Citrus Sinensis ID: 047066

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250------
Protein Sequence
MKSYSLFFLPSVFLKYLYIFASIFFNFTSRCWHTLCGCAVGSSWLYSVLKKRNLIGLEGRKNGTQRKFFQQNGGYLLQLQLSKRSGSSDTAKIFTAGELKIATNNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEFVKLPTISWEVRIRIAAETAEDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTLGYYLHTSQGTLNKE
Secondary Structure (PSIPRED)
ccccccccccccccccEEEccccccccccccccEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHcccccccccEEcHHHHHHHHcccccccccccccccEEEEEEEccccEEEEEEcccccHHHHHHHHHHHHHHHHcccccEEEEEcEEcccccEEEEEEEcccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccEEEEEEccccHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccEEEEEcccccccccccccEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHccccccccccccEEcHHHHHHHHccccHcccccccccccEEEcEcccccEEEEEEccccccccHHHHHHHHHHHHHHHcHcHHEEEEEEcccccEEEEEEEcccccccHHHHHHHHHHHHHHHHHHcEEEcccccccEcccccHEcccccccEEEEEEEEEEEEEccccccccccc
Coil and Loop (DISEMBL)
mksyslfflpsVFLKYLYIFASIFFNFTSRCWHtlcgcavgssWLYSVLKKRnliglegrkngtqrKFFQQNGGYLLQLQlskrsgssdtakIFTAGElkiatnnyaydrmigrggygtvflgslsdnkaIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLgccletevpLLVNEFVKLPTISWEVRIRIAAETAEDIKSInillddnyttkvcdfgasklvpidetqlstmVQGTLGYYLHtsqgtlnke
Flexible Loop (DISEMBL)
MKSYSLFFLPSVFLKYLYIFASIFFNFTSRCWHTLCGCAVGSSWLYSVLKKRNLIGlegrkngtqrkFFQQNGGYLLQLQLSKRSGSSDTAKIftagelkiatnnyAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEFVKLPTISWEVRIRIAAETAEDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTLGYYlhtsqgtlnke
Low Complexity Region (SEG)
MKSYSLFFLPSVFLKYLYIFASIFFNFTSRCWHTLCGCAVGSSWLYSVLKKRNLIGLEGRKNGTQRKFFqqnggyllqlqlSKRSGSSDTAKIFTAGELKIATNNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEFVKLPTISWEVRIRIAAETAEDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTLGYYLHTSQGTLNKE
Disordered region (IsUnstruct)
***YSLFFLPSVFLKYLYIFASIFFNFTSRCWHTLCGCAVGSSWLYSVLKKRNLIGLEGRKNGTQRKFFQQNGGYLLQLQL********TAKIFTAGELKIATNNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEFVKLPTISWEVRIRIAAETAEDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTLGYYLHT********
Disordered Region (DISOPRED)
**SYSLFFLPSVFLKYLYIFASIFFNFTSRCWHTLCGCAVGSSWLYSVLKKRNLIGLE**********************************IFTAGELKIATNNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIV***QIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEFVKLPTISWEVRIRIAAETAEDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTLGYYLHTSQGTL***
Disordered Region (DISEMBL)
MKSYSLFFLPSVFLKYLYIFASIFFNFTSRCWHTLCGCAVGSSWLYSVLKKRNLIGLEGRKNGTQRKFFQQNGGYLLQLQLSKRSGSSDTAKIFTAGELKIATNNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEFVKLPTISWEVRIRIAAETAEDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTLGYYLHTSQGTLNKE
Disordered Region (DISPRO)
****SLFFLPSVFLKYLYIFASIFFNFTSRCWHTLCGCAVGSSWLYSVLKKRNLIGLEGRKNGTQRKFFQQNGGYLLQLQLSKRSGSSDTAKIFTAGELKIATNNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEFVKLPTISWEVRIRIAAETAEDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTLGYYLHT********
Transmembrane Helix (TMHMM)
iiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKSYSLFFLPSVFLKYLYIFASIFFNFTSRCWHTLCGCAVGSSWLYSVLKKRNLIGLEGRKNGTQRKFFQQNGGYLLQLQLSKRSGSSDTAKIFTAGELKIATNNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEFVKLPTISWEVRIRIAAETAEDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTLGYYLHTSQGTLNKE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	256	2.2.26 [Sep-21-2011]
Q9S9M5	730	Wall-associated receptor	yes	no	0.804	0.282	0.439	8e-51
Q9LMN7	733	Wall-associated receptor	no	no	0.734	0.256	0.509	2e-50
Q9LMP1	732	Wall-associated receptor	no	no	0.734	0.256	0.509	5e-50
Q39191	735	Wall-associated receptor	no	no	0.703	0.244	0.516	6e-50
Q9LMN6	738	Wall-associated receptor	no	no	0.703	0.243	0.507	1e-49
Q9LMN8	741	Wall-associated receptor	no	no	0.703	0.242	0.511	4e-49
Q9LSV3	433	Putative wall-associated	no	no	0.890	0.526	0.425	2e-48
Q9S9M2	761	Wall-associated receptor	no	no	0.808	0.272	0.429	2e-47
Q7X8C5	748	Wall-associated receptor	no	no	0.777	0.266	0.446	2e-47
Q8GXQ3	642	Wall-associated receptor	no	no	0.785	0.313	0.427	8e-47

>sp|Q9S9M5|WAKLA_ARATH Wall-associated receptor kinase-like 1 OS=Arabidopsis thaliana GN=WAKL1 PE=1 SV=1

 Score =  200 bits (508), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 108/246 (43%), Positives = 157/246 (63%), Gaps = 40/246 (16%)

Query: 40  VGSSWLYSVLKKRNLIGLEGRKNGTQRKFFQQNGGYLLQLQLSKRSGSSDTAKIFTAGEL 99
           VG  WL+ ++KKR       R     +KFF++NGG LL+ QL+ + G+ + +KIF++ EL
Sbjct: 370 VGLFWLFKLIKKR-------RNINRSKKFFKRNGGLLLKQQLTTKDGNVEMSKIFSSKEL 422

Query: 100 KIATNNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINH 159
           + AT+N++ DR++G+GG GTV+ G L D   +A+K+S++V + ++E+ IN++V+LSQINH
Sbjct: 423 RKATDNFSIDRVLGQGGQGTVYKGMLVDGSIVAVKRSKVVDEDKMEEFINEIVLLSQINH 482

Query: 160 RNVVGLLGCCLETEVPLLVNEFVKLP-------------TISWEVRIRIAAETA------ 200
           RN+V LLGCCLETEVP+LV E++                T++WEVR+RIA E A      
Sbjct: 483 RNIVKLLGCCLETEVPILVYEYIPNGDLFKRLHDESDDYTMTWEVRLRIAIEIAGALTYM 542

Query: 201 ----------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTLGY----YL 246
                      DIK+ NILLD+ Y  KV DFG S+ V +D+T L+T+V GT GY    Y 
Sbjct: 543 HSAASFPIFHRDIKTTNILLDEKYRAKVSDFGTSRSVTLDQTHLTTLVAGTFGYMDPEYF 602

Query: 247 HTSQGT 252
            +SQ T
Sbjct: 603 LSSQYT 608

Serine/threonine-protein kinase that may function as a signaling receptor of extracellular matrix component.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: -

>sp|Q9LMN7|WAK5_ARATH Wall-associated receptor kinase 5 OS=Arabidopsis thaliana GN=WAK5 PE=2 SV=1

 Score =  199 bits (505), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 111/218 (50%), Positives = 142/218 (65%), Gaps = 30/218 (13%)

Query: 57  LEGRKNGTQRK-FFQQNGGYLLQLQLSKRSGSSDTAKIFTAGELKIATNNYAYDRMIGRG 115
           +  RKN   R+ FF+QNGG +L  +LS    S+   KIFT   +K AT+ Y   R++G+G
Sbjct: 358 MRHRKNTELRQQFFEQNGGGMLIQRLSGAGPSNVDVKIFTEEGMKEATDGYNESRILGQG 417

Query: 116 GYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVP 175
           G GTV+ G L DN  +AIKK+R+  +SQ+EQ IN+V+VLSQINHRNVV LLGCCLETEVP
Sbjct: 418 GQGTVYKGILQDNSIVAIKKARLGDRSQVEQFINEVLVLSQINHRNVVKLLGCCLETEVP 477

Query: 176 LLVNEFVKLPT-------------ISWEVRIRIAAETA----------------EDIKSI 206
           LLV EF+   T             ++WE R+RIA E A                 D+K+ 
Sbjct: 478 LLVYEFISSGTLFDHLHGSMFDSSLTWEHRLRIAIEVAGTLAYLHSYASIPIIHRDVKTA 537

Query: 207 NILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTLGY 244
           NILLD+N T KV DFGAS+L+P+D+ QL+TMVQGTLGY
Sbjct: 538 NILLDENLTAKVADFGASRLIPMDQEQLTTMVQGTLGY 575

Serine/threonine-protein kinase that may function as a signaling receptor of extracellular matrix component. Binding to pectin may have significance in the control of cell expansion, morphogenesis and development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: -

>sp|Q9LMP1|WAK2_ARATH Wall-associated receptor kinase 2 OS=Arabidopsis thaliana GN=WAK2 PE=1 SV=1

 Score =  197 bits (502), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 111/218 (50%), Positives = 142/218 (65%), Gaps = 30/218 (13%)

Query: 57  LEGRKNGTQR-KFFQQNGGYLLQLQLSKRSGSSDTAKIFTAGELKIATNNYAYDRMIGRG 115
           ++ RKN   R KFF+QNGG +L  ++S    S+   KIFT   +K ATN Y   R++G+G
Sbjct: 354 IKHRKNTELRQKFFEQNGGGMLIQRVSGAGPSNVDVKIFTEKGMKEATNGYHESRILGQG 413

Query: 116 GYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVP 175
           G GTV+ G L DN  +AIKK+R+  +SQ+EQ IN+V+VLSQINHRNVV +LGCCLETEVP
Sbjct: 414 GQGTVYKGILPDNSIVAIKKARLGNRSQVEQFINEVLVLSQINHRNVVKVLGCCLETEVP 473

Query: 176 LLVNEFVKLPT-------------ISWEVRIRIAAETA----------------EDIKSI 206
           LLV EF+   T             ++WE R+RIA E A                 DIK+ 
Sbjct: 474 LLVYEFINSGTLFDHLHGSLYDSSLTWEHRLRIATEVAGSLAYLHSSASIPIIHRDIKTA 533

Query: 207 NILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTLGY 244
           NILLD N T KV DFGAS+L+P+D+ QL+T+VQGTLGY
Sbjct: 534 NILLDKNLTAKVADFGASRLIPMDKEQLTTIVQGTLGY 571

Serine/threonine-protein kinase that may function as a signaling receptor of extracellular matrix component. Binding to pectin may have significance in the control of cell expansion, morphogenesis and development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: -

>sp|Q39191|WAK1_ARATH Wall-associated receptor kinase 1 OS=Arabidopsis thaliana GN=WAK1 PE=1 SV=2

 Score =  197 bits (501), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 108/209 (51%), Positives = 136/209 (65%), Gaps = 29/209 (13%)

Query: 65  QRKFFQQNGGYLLQLQLSKRSGSSDTAKIFTAGELKIATNNYAYDRMIGRGGYGTVFLGS 124
           + +FF+QNGG +L  +LS    S+   KIFT   +K ATN YA  R++G+GG GTV+ G 
Sbjct: 368 REQFFEQNGGGMLTQRLSGAGPSNVDVKIFTEDGMKKATNGYAESRILGQGGQGTVYKGI 427

Query: 125 LSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEFVKL 184
           L DN  +AIKK+R+   SQ+EQ IN+V+VLSQINHRNVV LLGCCLETEVPLLV EF+  
Sbjct: 428 LPDNSIVAIKKARLGDSSQVEQFINEVLVLSQINHRNVVKLLGCCLETEVPLLVYEFITN 487

Query: 185 PT-------------ISWEVRIRIAAETA----------------EDIKSINILLDDNYT 215
            T             ++WE R++IA E A                 DIK+ NILLD N T
Sbjct: 488 GTLFDHLHGSMIDSSLTWEHRLKIAIEVAGTLAYLHSSASIPIIHRDIKTANILLDVNLT 547

Query: 216 TKVCDFGASKLVPIDETQLSTMVQGTLGY 244
            KV DFGAS+L+P+D+ +L TMVQGTLGY
Sbjct: 548 AKVADFGASRLIPMDKEELETMVQGTLGY 576

Serine/threonine-protein kinase that may function as a signaling receptor of extracellular matrix component. Binding to pectin may have significance in the control of cell expansion, morphogenesis and development. Required during plant's response to pathogen infection and in plant defense against heavy metal toxicity. Phosphorylates the oxygen-evolving enhancer protein 2 (OEE2) in an GRP-3-dependent manner.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: -

>sp|Q9LMN6|WAK4_ARATH Wall-associated receptor kinase 4 OS=Arabidopsis thaliana GN=WAK4 PE=2 SV=1

 Score =  196 bits (499), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 106/209 (50%), Positives = 138/209 (66%), Gaps = 29/209 (13%)

Query: 65  QRKFFQQNGGYLLQLQLSKRSGSSDTAKIFTAGELKIATNNYAYDRMIGRGGYGTVFLGS 124
           +++FF+QNGG +L  +LS    S+   KIFT   +K AT+ Y  +R++G+GG GTV+ G 
Sbjct: 369 RQQFFEQNGGGMLMQRLSGAGPSNVDVKIFTEEGMKEATDGYDENRILGQGGQGTVYKGI 428

Query: 125 LSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEFVKL 184
           L DN  +AIKK+R+   SQ+EQ IN+V+VLSQINHRNVV LLGCCLETEVPLLV EF+  
Sbjct: 429 LPDNSIVAIKKARLGDNSQVEQFINEVLVLSQINHRNVVKLLGCCLETEVPLLVYEFISS 488

Query: 185 PT-------------ISWEVRIRIAAETA----------------EDIKSINILLDDNYT 215
            T             ++WE R+R+A E A                 DIK+ NILLD+N T
Sbjct: 489 GTLFDHLHGSMFDSSLTWEHRLRMAVEIAGTLAYLHSSASIPIIHRDIKTANILLDENLT 548

Query: 216 TKVCDFGASKLVPIDETQLSTMVQGTLGY 244
            KV DFGAS+L+P+D+  L+TMVQGTLGY
Sbjct: 549 AKVADFGASRLIPMDKEDLATMVQGTLGY 577

Serine/threonine-protein kinase that may function as a signaling receptor of extracellular matrix component. Binding to pectin may have significance in the control of cell expansion, morphogenesis and development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: -

>sp|Q9LMN8|WAK3_ARATH Wall-associated receptor kinase 3 OS=Arabidopsis thaliana GN=WAK3 PE=2 SV=2

 Score =  194 bits (494), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 107/209 (51%), Positives = 137/209 (65%), Gaps = 29/209 (13%)

Query: 65  QRKFFQQNGGYLLQLQLSKRSGSSDTAKIFTAGELKIATNNYAYDRMIGRGGYGTVFLGS 124
           +R+FF+QNGG +L  +LS    S+   KIFT   +K ATN Y   R++G+GG GTV+ G 
Sbjct: 374 RRQFFEQNGGGMLIQRLSGAGLSNIDFKIFTEEGMKEATNGYDESRILGQGGQGTVYKGI 433

Query: 125 LSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEFVKL 184
           L DN  +AIKK+R+    Q++Q I++V+VLSQINHRNVV +LGCCLETEVPLLV EF+  
Sbjct: 434 LPDNTIVAIKKARLADSRQVDQFIHEVLVLSQINHRNVVKILGCCLETEVPLLVYEFITN 493

Query: 185 PT-------------ISWEVRIRIAAETA----------------EDIKSINILLDDNYT 215
            T             ++WE R+RIA E A                 DIK+ NILLD+N T
Sbjct: 494 GTLFDHLHGSIFDSSLTWEHRLRIAIEVAGTLAYLHSSASIPIIHRDIKTANILLDENLT 553

Query: 216 TKVCDFGASKLVPIDETQLSTMVQGTLGY 244
            KV DFGASKL+P+D+ QL+TMVQGTLGY
Sbjct: 554 AKVADFGASKLIPMDKEQLTTMVQGTLGY 582

Serine/threonine-protein kinase that may function as a signaling receptor of extracellular matrix component. Binding to pectin may have significance in the control of cell expansion, morphogenesis and development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: -

>sp|Q9LSV3|WAKLS_ARATH Putative wall-associated receptor kinase-like 16 OS=Arabidopsis thaliana GN=WAKL16 PE=3 SV=1

 Score =  192 bits (488), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 118/277 (42%), Positives = 162/277 (58%), Gaps = 49/277 (17%)

Query: 5   SLFFLPSVFL-------KYLYIFASIFFNFTSRCWHTLCGCAVGSSWLYSVLKKRNLIGL 57
           ++FF+ ++F+       KYL     I  N T+     +       S++ ++ K +     
Sbjct: 11  AIFFVVAIFVIACIEENKYLVWIMIILANTTN-----ILSLVRSISYIKNIRKHQ----- 60

Query: 58  EGRKNGTQRK-FFQQNGGYLLQLQLSKRSGSSDTAKIFTAGELKIATNNYAYDRMIGRGG 116
             +    QR+ FF++NGG +L  +LS    S+   KIFT  ++K ATN Y   R++G+GG
Sbjct: 61  --KDTKIQRQLFFEKNGGGMLIERLSGAGSSNIDFKIFTEEDMKEATNGYDVSRILGQGG 118

Query: 117 YGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPL 176
             TV+ G L DN  +AIKK+R+   +Q+EQ IN+V+VLSQINHRNVV LLGCCLETEVPL
Sbjct: 119 QWTVYKGILPDNSIVAIKKTRLGDNNQVEQFINEVLVLSQINHRNVVKLLGCCLETEVPL 178

Query: 177 LVNEFVK-------------LPTISWEVRIRIAAETA----------------EDIKSIN 207
           LV EF+              + +++WE R+ IA E A                 DIK+ N
Sbjct: 179 LVYEFITGGSLFDHLHGSMFVSSLTWEHRLEIAIEVAGAIAYLHSGASIPIIHRDIKTEN 238

Query: 208 ILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTLGY 244
           ILLD+N T KV DFGASKL P+D+ QL+TMVQGTLGY
Sbjct: 239 ILLDENLTAKVADFGASKLKPMDKEQLTTMVQGTLGY 275

Putative serine/threonine-protein kinase that may function as a signaling receptor of extracellular matrix component.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: -

>sp|Q9S9M2|WAKLD_ARATH Wall-associated receptor kinase-like 4 OS=Arabidopsis thaliana GN=WAKL4 PE=2 SV=2

 Score =  189 bits (480), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 106/247 (42%), Positives = 153/247 (61%), Gaps = 40/247 (16%)

Query: 39  AVGSSWLYSVLKKRNLIGLEGRKNGTQRKFFQQNGGYLLQLQLSKRSGSSDTAKIFTAGE 98
           A G   LY  +KK+       R++   R FF++NGG LL+ QL+++ G+ + +KIF++ E
Sbjct: 364 AFGIFGLYKFIKKQ-------RRSSRMRVFFRRNGGMLLKQQLARKEGNVEMSKIFSSNE 416

Query: 99  LKIATNNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQIN 158
           L+ AT+N+  +R++G+GG GTV+ G L D + +A+K+S+ + + ++E+ IN+VVVL+QIN
Sbjct: 417 LEKATDNFNTNRVLGQGGQGTVYKGMLVDGRIVAVKRSKAMDEDKVEEFINEVVVLAQIN 476

Query: 159 HRNVVGLLGCCLETEVPLLVNEFVKLPTI-------------SWEVRIRIAAETA----- 200
           HRN+V LLGCCLETEVP+LV EFV    +             +WEVR+ IA E A     
Sbjct: 477 HRNIVKLLGCCLETEVPVLVYEFVPNGDLCKRLRDECDDYIMTWEVRLHIAIEIAGALSY 536

Query: 201 -----------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTLGY----Y 245
                       DIK+ NILLD+ Y  KV DFG S+ V ID+T L+T V GT GY    Y
Sbjct: 537 LHSAASFPIYHRDIKTTNILLDEKYQVKVSDFGTSRSVTIDQTHLTTQVAGTFGYVDPEY 596

Query: 246 LHTSQGT 252
             +S+ T
Sbjct: 597 FQSSKFT 603

Serine/threonine-protein kinase that may function as a signaling receptor of extracellular matrix component. Plays a role in plant mineral nutrients response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: -

>sp|Q7X8C5|WAKLB_ARATH Wall-associated receptor kinase-like 2 OS=Arabidopsis thaliana GN=WAKL2 PE=2 SV=1

 Score =  189 bits (479), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 105/235 (44%), Positives = 148/235 (62%), Gaps = 36/235 (15%)

Query: 39  AVGSSWLYSVLKKRNLIGLEGRKNGTQRKFFQQNGGYLLQLQLSKRSGSSDTAKIFTAGE 98
           A G   LY  ++KR       RK    RKFF++NGG LL+ QL+++ G+ + ++IF++ E
Sbjct: 356 AFGIFGLYKFVQKR-------RKLIRMRKFFRRNGGMLLKQQLARKEGNVEMSRIFSSHE 408

Query: 99  LKIATNNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQIN 158
           L+ AT+N+  +R++G+GG GTV+ G L D + +A+K+S+ V + ++E+ IN+VVVL+QIN
Sbjct: 409 LEKATDNFNKNRVLGQGGQGTVYKGMLVDGRIVAVKRSKAVDEDRVEEFINEVVVLAQIN 468

Query: 159 HRNVVGLLGCCLETEVPLLVNEFVKLP-------------TISWEVRIRIAAETA----- 200
           HRN+V LLGCCLETEVP+LV EFV                T++WEVR+ IA E A     
Sbjct: 469 HRNIVKLLGCCLETEVPVLVYEFVPNGDLCKRLHDESDDYTMTWEVRLHIAIEIAGALSY 528

Query: 201 -----------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTLGY 244
                       DIK+ NILLD+    KV DFG S+ V ID+T L+T V GT GY
Sbjct: 529 LHSAASFPIYHRDIKTTNILLDERNRAKVSDFGTSRSVTIDQTHLTTQVAGTFGY 583

Serine/threonine-protein kinase that may function as a signaling receptor of extracellular matrix component.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: -

>sp|Q8GXQ3|WAKLF_ARATH Wall-associated receptor kinase-like 6 OS=Arabidopsis thaliana GN=WAKL6 PE=2 SV=2

 Score =  187 bits (474), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 104/243 (42%), Positives = 153/243 (62%), Gaps = 42/243 (17%)

Query: 45  LYSVLKKRNLIGLEGRKNGTQRKFFQQNGGYLLQLQLSKRSGSSDTAKIFTAGELKIATN 104
           LY  +KKR  I          + FF++NGG LL+ QL  ++G+ D ++IF++ ELK AT+
Sbjct: 378 LYKFIKKRTRII-------RNKNFFKRNGGLLLKQQLITKNGNVDMSRIFSSKELKKATD 430

Query: 105 NYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVG 164
           N++ +R++G+GG GTV+ G L++ + +A+K+S++V + ++E+ IN+VV+LSQINHRN+V 
Sbjct: 431 NFSMNRVLGQGGQGTVYKGMLAEGRIVAVKRSKVVGEGKMEEFINEVVLLSQINHRNIVK 490

Query: 165 LLGCCLETEVPLLVNEFVKLP---------------TISWEVRIRIAAETA--------- 200
           LLGCCLETEVP+LV E++                  T++WEVR+RIA E A         
Sbjct: 491 LLGCCLETEVPVLVYEYIPNGDLFKRLHEKSESNDYTMTWEVRLRIAIEIAGALSYMHSA 550

Query: 201 -------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTLGY----YLHTS 249
                   DIK+ NILLD+ Y  KV DFG S+ + I +T L+T+V GT GY    Y  +S
Sbjct: 551 ASIPIYHRDIKTTNILLDEKYRAKVSDFGTSRSITIAQTHLTTLVAGTFGYMDPEYFLSS 610

Query: 250 QGT 252
           Q T
Sbjct: 611 QYT 613

Serine/threonine-protein kinase that may function as a signaling receptor of extracellular matrix component.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	256
359492355	745	PREDICTED: wall-associated receptor kina	0.804	0.276	0.605	2e-69
359492353	820	PREDICTED: wall-associated receptor kina	0.933	0.291	0.533	2e-66
359492347	722	PREDICTED: wall-associated receptor kina	0.792	0.281	0.580	6e-66
255558508	1433	ATP binding protein, putative [Ricinus c	0.804	0.143	0.565	1e-65
356518583	752	PREDICTED: wall-associated receptor kina	0.804	0.273	0.553	2e-61
225456209	736	PREDICTED: wall-associated receptor kina	0.789	0.274	0.537	4e-61
356507624	752	PREDICTED: wall-associated receptor kina	0.804	0.273	0.540	1e-60
225459705	742	PREDICTED: wall-associated receptor kina	0.804	0.277	0.573	1e-60
356554681	749	PREDICTED: wall-associated receptor kina	0.804	0.275	0.532	1e-60
356551203	766	PREDICTED: wall-associated receptor kina	0.824	0.275	0.521	4e-60

>gi|359492355|ref|XP_002284688.2| PREDICTED: wall-associated receptor kinase 2-like [Vitis vinifera]

 Score =  268 bits (685), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 149/246 (60%), Positives = 171/246 (69%), Gaps = 40/246 (16%)

Query: 40  VGSSWLYSVLKKRNLIGLEGRKNGTQRKFFQQNGGYLLQLQLSKRSGSSDTAKIFTAGEL 99
           + SSWLY  LKKR  I L       + KFFQQNGG +LQ QL  R GSS++ KIFTA EL
Sbjct: 356 ITSSWLYWGLKKRKFIKL-------KEKFFQQNGGLMLQQQLHGREGSSESVKIFTAEEL 408

Query: 100 KIATNNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINH 159
           + ATN Y  D +IGRGGYGTV+ G L+D + +AIKKS++V Q+QIEQ IN+VVVLSQINH
Sbjct: 409 EKATNKYDEDTIIGRGGYGTVYKGILADGRVVAIKKSKLVDQTQIEQFINEVVVLSQINH 468

Query: 160 RNVVGLLGCCLETEVPLLVNEFV-------------KLPTISWEVRIRIAAETA------ 200
           RNVV LLGCCLETEVPLLV EF+             K  +ISWE R+RIAAETA      
Sbjct: 469 RNVVKLLGCCLETEVPLLVYEFITNGTLFDYIHNKSKASSISWETRLRIAAETAGVLSYL 528

Query: 201 ----------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTLGY----YL 246
                      D+KS NILLDDNYT KV DFGAS+LVP+D+TQLSTMVQGTLGY    YL
Sbjct: 529 HSSASIPIIHRDVKSTNILLDDNYTAKVSDFGASRLVPLDQTQLSTMVQGTLGYLDPEYL 588

Query: 247 HTSQGT 252
           HTSQ T
Sbjct: 589 HTSQLT 594

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359492353|ref|XP_002284691.2| PREDICTED: wall-associated receptor kinase 3-like [Vitis vinifera]

 Score =  258 bits (659), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 152/285 (53%), Positives = 183/285 (64%), Gaps = 46/285 (16%)

Query: 6   LFFLPSVFLKYLYIFASIFFNFTSRCWHTLCGCA-----VGSSWLYSVLKKRNLIGLEGR 60
            FF  S+ LK  + +  IF      C +   G       +GSSWLY  LKKR  I L   
Sbjct: 394 FFFALSILLKRKFNY-DIFHLLVLICSNVGVGIGLISLLIGSSWLYWGLKKRKFIKL--- 449

Query: 61  KNGTQRKFFQQNGGYLLQLQLSKRSGSSDTAKIFTAGELKIATNNYAYDRMIGRGGYGTV 120
               + +FFQQNGG +LQ QLSKR GS++T KIFT  EL+ ATN Y   ++IG GGYGTV
Sbjct: 450 ----KEEFFQQNGGLMLQKQLSKREGSTETIKIFTGAELEKATNKYNESKIIGHGGYGTV 505

Query: 121 FLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNE 180
           + G+L+D + +AIKKS++V +SQIEQ IN+V+VLSQINHRNVV LLGCCLET+VPLLV E
Sbjct: 506 YKGTLTDGRIVAIKKSKMVDKSQIEQFINEVLVLSQINHRNVVKLLGCCLETKVPLLVYE 565

Query: 181 FVKLPT-------------ISWEVRIRIAAETA----------------EDIKSINILLD 211
           F+   T             I WE+R+RIA ETA                 D+KS NILLD
Sbjct: 566 FITNGTLFDHIHNKSNTSIIPWEIRLRIATETAGVLSYLHSAASIPIIHRDVKSTNILLD 625

Query: 212 DNYTTKVCDFGASKLVPIDETQLSTMVQGTLGY----YLHTSQGT 252
           DNYT KV DFGAS+LVP+D+TQLSTMVQGTLGY    YL TSQ T
Sbjct: 626 DNYTAKVSDFGASRLVPLDQTQLSTMVQGTLGYLDPEYLLTSQLT 670

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359492347|ref|XP_003634400.1| PREDICTED: wall-associated receptor kinase 2-like [Vitis vinifera]

 Score =  256 bits (655), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 141/243 (58%), Positives = 169/243 (69%), Gaps = 40/243 (16%)

Query: 43  SWLYSVLKKRNLIGLEGRKNGTQRKFFQQNGGYLLQLQLSKRSGSSDTAKIFTAGELKIA 102
           SWLY  LKKR  I L       + KFFQQNGG +LQ QLS++ GS +T KIFTAGEL+ A
Sbjct: 344 SWLYWGLKKRKFIRL-------KEKFFQQNGGLMLQQQLSRQEGSDETIKIFTAGELEKA 396

Query: 103 TNNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNV 162
           TN Y    ++GRGGYGTV+ G+L++ + +A+KKS+++ +SQIEQ IN+V+VLSQINHRNV
Sbjct: 397 TNKYDESNIVGRGGYGTVYKGTLTNGRIVAVKKSKMIDKSQIEQFINEVLVLSQINHRNV 456

Query: 163 VGLLGCCLETEVPLLVNEFV-------------KLPTISWEVRIRIAAETA--------- 200
           V LLGCCLETEVPLLV EF+             K  TISWEVR+RIA ETA         
Sbjct: 457 VKLLGCCLETEVPLLVYEFITNGTLFNYIHGERKASTISWEVRLRIATETAGVLSYLHSA 516

Query: 201 -------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTLGY----YLHTS 249
                   D+KS NILLDDNYT KV DFGAS+LVP+D+ QLST+VQGTLGY    YL TS
Sbjct: 517 TSTPIIHRDVKSTNILLDDNYTAKVSDFGASRLVPLDQAQLSTLVQGTLGYLDPEYLLTS 576

Query: 250 QGT 252
           Q T
Sbjct: 577 QLT 579

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255558508|ref|XP_002520279.1| ATP binding protein, putative [Ricinus communis] gi|223540498|gb|EEF42065.1| ATP binding protein, putative [Ricinus communis]

 Score =  255 bits (652), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 139/246 (56%), Positives = 170/246 (69%), Gaps = 40/246 (16%)

Query: 40   VGSSWLYSVLKKRNLIGLEGRKNGTQRKFFQQNGGYLLQLQLSKRSGSSDTAKIFTAGEL 99
            V SSW+Y VL+KR LI L       + KF+Q+NGG +LQ +LS+R G++D AK+FTA EL
Sbjct: 1054 VVSSWIYLVLRKRKLIKL-------KEKFYQKNGGAILQQKLSRRDGNTDAAKVFTAEEL 1106

Query: 100  KIATNNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINH 159
            K ATNNY    +IG+GG+GTV+ G ++DN+ +AIKKSR V Q+Q+EQ IN+V+VLSQINH
Sbjct: 1107 KKATNNYDESNIIGKGGFGTVYKGIVTDNRVVAIKKSRTVDQAQVEQFINEVIVLSQINH 1166

Query: 160  RNVVGLLGCCLETEVPLLVNEFVKLPT-------------ISWEVRIRIAAETA------ 200
            RNVV LLGCCLETEVPLLV EF+   T             +SWE R+RIAAETA      
Sbjct: 1167 RNVVRLLGCCLETEVPLLVYEFITNGTLFDYIHCESNASALSWETRLRIAAETAGALSYL 1226

Query: 201  ----------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTLGY----YL 246
                       D+KS NILLD N+  KV DFGAS+LVP+DE QLSTMVQGT GY    YL
Sbjct: 1227 HSAATIPIIHRDVKSTNILLDANHAAKVSDFGASRLVPVDENQLSTMVQGTWGYLDPEYL 1286

Query: 247  HTSQGT 252
            HT+Q T
Sbjct: 1287 HTNQLT 1292

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356518583|ref|XP_003527958.1| PREDICTED: wall-associated receptor kinase 2-like [Glycine max]

 Score =  241 bits (616), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 135/244 (55%), Positives = 159/244 (65%), Gaps = 38/244 (15%)

Query: 40  VGSSWLYSVLKKRNLIGLEGRKNGTQRKFFQQNGGYLLQLQLSKRSGSSDTAKIFTAGEL 99
           +GS WLY V +KR  + L  R       +F+QNGG +LQ Q+S   GSS+ AKIFTA EL
Sbjct: 357 IGSGWLYHVFRKRKRVRLTTR-------YFKQNGGLMLQQQISNMEGSSERAKIFTAREL 409

Query: 100 KIATNNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINH 159
           K AT N+   R+IGRGGYGTV+ G L D+  +AIKKS++V  SQ EQ IN+VVVLSQINH
Sbjct: 410 KKATENFHESRIIGRGGYGTVYRGILPDDHVVAIKKSKLVDHSQTEQFINEVVVLSQINH 469

Query: 160 RNVVGLLGCCLETEVPLLVNEFV-----------KLPTISWEVRIRIAAETA-------- 200
           RNVV LLGCCLETE+PLLV EFV           K  T+ WE R+RIAAETA        
Sbjct: 470 RNVVKLLGCCLETEMPLLVYEFVNNGTLFDHIHNKNTTLPWEARLRIAAETAGVLAYLHS 529

Query: 201 --------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTLGY----YLHT 248
                    D KS NILLDD YT KV DFG S+LVP D+ QL+T+VQGTLGY    Y  +
Sbjct: 530 AASIPIIHRDFKSTNILLDDKYTAKVSDFGTSRLVPRDKCQLTTLVQGTLGYLDPEYFQS 589

Query: 249 SQGT 252
           SQ T
Sbjct: 590 SQLT 593

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225456209|ref|XP_002282887.1| PREDICTED: wall-associated receptor kinase 2-like isoform 3 [Vitis vinifera]

 Score =  240 bits (613), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 130/242 (53%), Positives = 163/242 (67%), Gaps = 40/242 (16%)

Query: 44  WLYSVLKKRNLIGLEGRKNGTQRKFFQQNGGYLLQLQLSKRSGSSDTAKIFTAGELKIAT 103
           WLY   +KR LI L       + KFF+QNGG +LQ  LSK  G ++  KIFT  +LK AT
Sbjct: 353 WLYWGFRKRKLIKL-------KEKFFEQNGGIMLQQLLSKHEGFAEATKIFTTEDLKKAT 405

Query: 104 NNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVV 163
           NNY   R++GRGG GTV+ G L+DN+ +A+KKS+I+ QSQ+EQ IN+V++LSQ+NHRNVV
Sbjct: 406 NNYDERRVLGRGGQGTVYKGILADNRVVAVKKSKIMDQSQVEQFINEVIILSQVNHRNVV 465

Query: 164 GLLGCCLETEVPLLVNEFV-------------KLPTISWEVRIRIAAETA---------- 200
            LLGCCLETEVPLLV EFV             +  +ISWE R+RIA ETA          
Sbjct: 466 KLLGCCLETEVPLLVYEFVINGTLYDHLHNQDQTYSISWETRLRIATETAGALWYLHSAA 525

Query: 201 ------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTLGY----YLHTSQ 250
                  D+KS NILLD+NYT KV DFGAS+L+P+D+ QL+T+VQGTLGY    Y H+SQ
Sbjct: 526 STPIIHRDVKSTNILLDNNYTAKVSDFGASRLIPLDQAQLTTLVQGTLGYLDPEYFHSSQ 585

Query: 251 GT 252
            T
Sbjct: 586 LT 587

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356507624|ref|XP_003522564.1| PREDICTED: wall-associated receptor kinase 2-like [Glycine max]

 Score =  239 bits (609), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 132/244 (54%), Positives = 161/244 (65%), Gaps = 38/244 (15%)

Query: 40  VGSSWLYSVLKKRNLIGLEGRKNGTQRKFFQQNGGYLLQLQLSKRSGSSDTAKIFTAGEL 99
           +GS WL+ V +KR ++ L  R       +F++NGG +LQ Q++   GSS+ AKIFTA EL
Sbjct: 335 IGSGWLFHVFRKRKMVRLTAR-------YFKRNGGLMLQQQIANMEGSSERAKIFTATEL 387

Query: 100 KIATNNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINH 159
           K A+ N+   R+IGRGGYGTV+ G L ++K +AIKKS++V  SQIEQ IN+VVVLSQINH
Sbjct: 388 KKASENFHESRIIGRGGYGTVYRGILPNDKVVAIKKSKLVDHSQIEQFINEVVVLSQINH 447

Query: 160 RNVVGLLGCCLETEVPLLVNEFV-----------KLPTISWEVRIRIAAETA-------- 200
           RNVV LLGCCLETE+PLLV EFV           K  T+ W  R+RIAAETA        
Sbjct: 448 RNVVKLLGCCLETEMPLLVYEFVNNGTLFDHIHNKNTTLPWVTRLRIAAETAGVLAYLHS 507

Query: 201 --------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTLGY----YLHT 248
                    D KS NILLDD YT KV DFG S+LVP D+ QL+T+VQGTLGY    Y  T
Sbjct: 508 AASIPVIHRDFKSTNILLDDKYTAKVSDFGTSRLVPRDKCQLTTLVQGTLGYLDPEYFQT 567

Query: 249 SQGT 252
           SQ T
Sbjct: 568 SQLT 571

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225459705|ref|XP_002284700.1| PREDICTED: wall-associated receptor kinase 1-like [Vitis vinifera]

 Score =  238 bits (608), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 141/246 (57%), Positives = 176/246 (71%), Gaps = 40/246 (16%)

Query: 40  VGSSWLYSVLKKRNLIGLEGRKNGTQRKFFQQNGGYLLQLQLSKRSGSSDTAKIFTAGEL 99
           +GSSWLY  LKKR       +    ++KFF+QNGG +L+ QLS + GS++T KIF+A EL
Sbjct: 357 MGSSWLYWGLKKR-------KFIKLKKKFFEQNGGLMLRQQLSSQEGSNETVKIFSAEEL 409

Query: 100 KIATNNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINH 159
           + AT+ YA +++IG+GGYGTV+ G+L++ + +AIKKS++V +SQIEQ IN+V+VLSQINH
Sbjct: 410 EKATDKYAENKIIGQGGYGTVYKGTLTNGRIVAIKKSKMVDKSQIEQFINEVLVLSQINH 469

Query: 160 RNVVGLLGCCLETEVPLLVNEFV-------------KLPTISWEVRIRIAAETAE----- 201
           RNVV LLGCCLETEVPLLV EF+             K+ T SWEVR+RIA ETAE     
Sbjct: 470 RNVVKLLGCCLETEVPLLVYEFITNGTLFDYIHKGKKISTSSWEVRLRIATETAEVLSYL 529

Query: 202 -----------DIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTLGY----YL 246
                      D+KS NILLDDNYT KV DFGAS+LVP+D+TQLSTMVQGTLGY    YL
Sbjct: 530 HSAASTPIIHRDVKSTNILLDDNYTAKVSDFGASRLVPLDQTQLSTMVQGTLGYLDPEYL 589

Query: 247 HTSQGT 252
            TSQ T
Sbjct: 590 LTSQLT 595

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356554681|ref|XP_003545672.1| PREDICTED: wall-associated receptor kinase 2-like [Glycine max]

 Score =  238 bits (608), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 131/246 (53%), Positives = 165/246 (67%), Gaps = 40/246 (16%)

Query: 40  VGSSWLYSVLKKRNLIGLEGRKNGTQRKFFQQNGGYLLQLQLSKRSGSSDTAKIFTAGEL 99
           +G SW+Y + +KR ++ L       + KFFQQNGG +L+ QLS R  SS +  IFTA +L
Sbjct: 360 MGISWVYLIKQKRKVLKL-------KEKFFQQNGGIILRQQLSTRKDSSQSTTIFTAEQL 412

Query: 100 KIATNNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINH 159
           + ATN +    +IG+GGYGTVF G LSDN+ +AIKKS+IV QSQIEQ IN+V+VLSQINH
Sbjct: 413 EKATNYFDEKLVIGKGGYGTVFKGFLSDNRVVAIKKSKIVDQSQIEQFINEVIVLSQINH 472

Query: 160 RNVVGLLGCCLETEVPLLVNEFV-------------KLPTISWEVRIRIAAETA------ 200
           RNVV LLGCCLETEVPLLV EFV             K+  +SW+ R+R+A E A      
Sbjct: 473 RNVVKLLGCCLETEVPLLVYEFVNNGTLFDYLHNEHKVANVSWKTRLRVATEVAGALSYL 532

Query: 201 ----------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTLGY----YL 246
                      D+K+ NILLDD YT KV DFGAS+LVP+D+T+L+T+VQGT GY    Y+
Sbjct: 533 HSAASIPIIHRDVKTANILLDDTYTAKVSDFGASRLVPLDQTELATIVQGTFGYLDPEYM 592

Query: 247 HTSQGT 252
            TSQ T
Sbjct: 593 QTSQLT 598

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356551203|ref|XP_003543967.1| PREDICTED: wall-associated receptor kinase 5-like [Glycine max]

 Score =  237 bits (604), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 131/251 (52%), Positives = 167/251 (66%), Gaps = 40/251 (15%)

Query: 35  LCGCAVGSSWLYSVLKKRNLIGLEGRKNGTQRKFFQQNGGYLLQLQLSKRSGSSDTAKIF 94
           L G  +G+SWLY + +KR ++ L       + KFFQQNGG +L+ QLS R  S+ +A IF
Sbjct: 372 LLGLFMGTSWLYLIYQKRKVLKL-------KEKFFQQNGGMILKQQLSAREDSTQSATIF 424

Query: 95  TAGELKIATNNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVL 154
           TA +LK ATNN+    +IG+GGYGTVF G LS+N  +AIKKS+ V QSQ+EQ IN+V+VL
Sbjct: 425 TAEQLKKATNNFDESLIIGKGGYGTVFKGVLSNNTIVAIKKSKTVDQSQVEQFINEVIVL 484

Query: 155 SQINHRNVVGLLGCCLETEVPLLVNEFV-------------KLPTISWEVRIRIAAETA- 200
           SQINHRNVV LLGCCLETEVPLLV EFV             +L  + W+ R+RIA E A 
Sbjct: 485 SQINHRNVVKLLGCCLETEVPLLVYEFVSNGTLFHYLHNEGQLANVCWKTRLRIATEAAG 544

Query: 201 ---------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTLGY- 244
                           D+K+ NILLDD  T KV DFGAS+L+P+D+T+L+T+VQGT+GY 
Sbjct: 545 ALSYLHSEASIPIIHRDVKTANILLDDACTAKVSDFGASRLIPLDQTELATIVQGTIGYL 604

Query: 245 ---YLHTSQGT 252
              Y+ TSQ T
Sbjct: 605 DPEYMQTSQLT 615

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	256
TAIR|locus:2200552	730	WAKL1 "wall associated kinase-	0.601	0.210	0.419	2.6e-43
TAIR|locus:2014912	732	WAK2 "wall-associated kinase 2	0.562	0.196	0.481	6.6e-43
TAIR|locus:2014962	733	WAK5 "wall associated kinase 5	0.550	0.192	0.483	1.2e-42
TAIR|locus:2094468	433	AT3G25490 [Arabidopsis thalian	0.531	0.314	0.466	4.6e-42
TAIR|locus:2014902	735	WAK1 "cell wall-associated kin	0.531	0.185	0.483	2.1e-41
TAIR|locus:2014897	741	WAK3 "wall associated kinase 3	0.531	0.183	0.463	5.3e-41
TAIR|locus:2014952	738	WAK4 "wall associated kinase 4	0.531	0.184	0.469	7.9e-41
TAIR|locus:2200527	642	WAKL6 "wall associated kinase-	0.601	0.239	0.409	4.9e-40
TAIR|locus:2019843	769	WAKL10 "WALL ASSOCIATED KINASE	0.597	0.198	0.385	9.5e-40
TAIR|locus:2019893	751	RFO1 "RESISTANCE TO FUSARIUM O	0.640	0.218	0.402	1.2e-39

TAIR|locus:2200552 WAKL1 "wall associated kinase-like 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 341 (125.1 bits), Expect = 2.6e-43, Sum P(2) = 2.6e-43
 Identities = 73/174 (41%), Positives = 112/174 (64%)

Query:    40 VGSSWLYSVLKKRNLIGLEGRKNGTQRKFFXXXXXXXXXXXXSKRSGSSDTAKIFTAGEL 99
             VG  WL+ ++KKR       R     +KFF            + + G+ + +KIF++ EL
Sbjct:   370 VGLFWLFKLIKKR-------RNINRSKKFFKRNGGLLLKQQLTTKDGNVEMSKIFSSKEL 422

Query:   100 KIATNNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINH 159
             + AT+N++ DR++G+GG GTV+ G L D   +A+K+S++V + ++E+ IN++V+LSQINH
Sbjct:   423 RKATDNFSIDRVLGQGGQGTVYKGMLVDGSIVAVKRSKVVDEDKMEEFINEIVLLSQINH 482

Query:   160 RNVVGLLGCCLETEVPLLVNEFV-------KLP------TISWEVRIRIAAETA 200
             RN+V LLGCCLETEVP+LV E++       +L       T++WEVR+RIA E A
Sbjct:   483 RNIVKLLGCCLETEVPILVYEYIPNGDLFKRLHDESDDYTMTWEVRLRIAIEIA 536

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005618 "cell wall" evidence=ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2014912 WAK2 "wall-associated kinase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 319 (117.4 bits), Expect = 6.6e-43, Sum P(2) = 6.6e-43
 Identities = 76/158 (48%), Positives = 96/158 (60%)

Query:    57 LEGRKNGTQR-KFFXXXXXXXXXXXXSKRSGSSDTAKIFTAGELKIATNNYAYDRMIGRG 115
             ++ RKN   R KFF            S    S+   KIFT   +K ATN Y   R++G+G
Sbjct:   354 IKHRKNTELRQKFFEQNGGGMLIQRVSGAGPSNVDVKIFTEKGMKEATNGYHESRILGQG 413

Query:   116 GYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVP 175
             G GTV+ G L DN  +AIKK+R+  +SQ+EQ IN+V+VLSQINHRNVV +LGCCLETEVP
Sbjct:   414 GQGTVYKGILPDNSIVAIKKARLGNRSQVEQFINEVLVLSQINHRNVVKVLGCCLETEVP 473

Query:   176 LLVNEFVKLPTI-------------SWEVRIRIAAETA 200
             LLV EF+   T+             +WE R+RIA E A
Sbjct:   474 LLVYEFINSGTLFDHLHGSLYDSSLTWEHRLRIATEVA 511

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009751 "response to salicylic acid stimulus" evidence=IDA

GO:0009311 "oligosaccharide metabolic process" evidence=IMP

GO:0009826 "unidimensional cell growth" evidence=IMP

GO:0009992 "cellular water homeostasis" evidence=IMP;IDA

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0016226 "iron-sulfur cluster assembly" evidence=RCA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

TAIR|locus:2014962 WAK5 "wall associated kinase 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 311 (114.5 bits), Expect = 1.2e-42, Sum P(2) = 1.2e-42
 Identities = 75/155 (48%), Positives = 94/155 (60%)

Query:    60 RKNGTQRK-FFXXXXXXXXXXXXSKRSGSSDTAKIFTAGELKIATNNYAYDRMIGRGGYG 118
             RKN   R+ FF            S    S+   KIFT   +K AT+ Y   R++G+GG G
Sbjct:   361 RKNTELRQQFFEQNGGGMLIQRLSGAGPSNVDVKIFTEEGMKEATDGYNESRILGQGGQG 420

Query:   119 TVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLV 178
             TV+ G L DN  +AIKK+R+  +SQ+EQ IN+V+VLSQINHRNVV LLGCCLETEVPLLV
Sbjct:   421 TVYKGILQDNSIVAIKKARLGDRSQVEQFINEVLVLSQINHRNVVKLLGCCLETEVPLLV 480

Query:   179 NEFVKLPTI-------------SWEVRIRIAAETA 200
              EF+   T+             +WE R+RIA E A
Sbjct:   481 YEFISSGTLFDHLHGSMFDSSLTWEHRLRIAIEVA 515

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2094468 AT3G25490 [Arabidopsis thaliana (taxid:3702)]

 Score = 299 (110.3 bits), Expect = 4.6e-42, Sum P(2) = 4.6e-42
 Identities = 70/150 (46%), Positives = 92/150 (61%)

Query:    65 QRKFFXXXXXXXXXXXXSKRSGSSDTA-KIFTAGELKIATNNYAYDRMIGRGGYGTVFLG 123
             QR+ F               +GSS+   KIFT  ++K ATN Y   R++G+GG  TV+ G
Sbjct:    66 QRQLFFEKNGGGMLIERLSGAGSSNIDFKIFTEEDMKEATNGYDVSRILGQGGQWTVYKG 125

Query:   124 SLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEFVK 183
              L DN  +AIKK+R+   +Q+EQ IN+V+VLSQINHRNVV LLGCCLETEVPLLV EF+ 
Sbjct:   126 ILPDNSIVAIKKTRLGDNNQVEQFINEVLVLSQINHRNVVKLLGCCLETEVPLLVYEFIT 185

Query:   184 -------------LPTISWEVRIRIAAETA 200
                          + +++WE R+ IA E A
Sbjct:   186 GGSLFDHLHGSMFVSSLTWEHRLEIAIEVA 215

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2014902 WAK1 "cell wall-associated kinase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 311 (114.5 bits), Expect = 2.1e-41, Sum P(2) = 2.1e-41
 Identities = 72/149 (48%), Positives = 91/149 (61%)

Query:    65 QRKFFXXXXXXXXXXXXSKRSGSSDTAKIFTAGELKIATNNYAYDRMIGRGGYGTVFLGS 124
             + +FF            S    S+   KIFT   +K ATN YA  R++G+GG GTV+ G 
Sbjct:   368 REQFFEQNGGGMLTQRLSGAGPSNVDVKIFTEDGMKKATNGYAESRILGQGGQGTVYKGI 427

Query:   125 LSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEFVKL 184
             L DN  +AIKK+R+   SQ+EQ IN+V+VLSQINHRNVV LLGCCLETEVPLLV EF+  
Sbjct:   428 LPDNSIVAIKKARLGDSSQVEQFINEVLVLSQINHRNVVKLLGCCLETEVPLLVYEFITN 487

Query:   185 PTI-------------SWEVRIRIAAETA 200
              T+             +WE R++IA E A
Sbjct:   488 GTLFDHLHGSMIDSSLTWEHRLKIAIEVA 516

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISS;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0007166 "cell surface receptor signaling pathway" evidence=IPI

GO:0005773 "vacuole" evidence=IDA

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009615 "response to virus" evidence=IEP

GO:0050832 "defense response to fungus" evidence=RCA;IMP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009814 "defense response, incompatible interaction" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0009505 "plant-type cell wall" evidence=IDA

TAIR|locus:2014897 WAK3 "wall associated kinase 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 294 (108.6 bits), Expect = 5.3e-41, Sum P(2) = 5.3e-41
 Identities = 69/149 (46%), Positives = 90/149 (60%)

Query:    65 QRKFFXXXXXXXXXXXXSKRSGSSDTAKIFTAGELKIATNNYAYDRMIGRGGYGTVFLGS 124
             +R+FF            S    S+   KIFT   +K ATN Y   R++G+GG GTV+ G 
Sbjct:   374 RRQFFEQNGGGMLIQRLSGAGLSNIDFKIFTEEGMKEATNGYDESRILGQGGQGTVYKGI 433

Query:   125 LSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEFVKL 184
             L DN  +AIKK+R+    Q++Q I++V+VLSQINHRNVV +LGCCLETEVPLLV EF+  
Sbjct:   434 LPDNTIVAIKKARLADSRQVDQFIHEVLVLSQINHRNVVKILGCCLETEVPLLVYEFITN 493

Query:   185 PTI-------------SWEVRIRIAAETA 200
              T+             +WE R+RIA E A
Sbjct:   494 GTLFDHLHGSIFDSSLTWEHRLRIAIEVA 522

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2014952 WAK4 "wall associated kinase 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 302 (111.4 bits), Expect = 7.9e-41, Sum P(2) = 7.9e-41
 Identities = 70/149 (46%), Positives = 92/149 (61%)

Query:    65 QRKFFXXXXXXXXXXXXSKRSGSSDTAKIFTAGELKIATNNYAYDRMIGRGGYGTVFLGS 124
             +++FF            S    S+   KIFT   +K AT+ Y  +R++G+GG GTV+ G 
Sbjct:   369 RQQFFEQNGGGMLMQRLSGAGPSNVDVKIFTEEGMKEATDGYDENRILGQGGQGTVYKGI 428

Query:   125 LSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEFVKL 184
             L DN  +AIKK+R+   SQ+EQ IN+V+VLSQINHRNVV LLGCCLETEVPLLV EF+  
Sbjct:   429 LPDNSIVAIKKARLGDNSQVEQFINEVLVLSQINHRNVVKLLGCCLETEVPLLVYEFISS 488

Query:   185 PTI-------------SWEVRIRIAAETA 200
              T+             +WE R+R+A E A
Sbjct:   489 GTLFDHLHGSMFDSSLTWEHRLRMAVEIA 517

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009826 "unidimensional cell growth" evidence=IMP

GO:0048527 "lateral root development" evidence=RCA;IMP

GO:0048589 "developmental growth" evidence=RCA

GO:0048765 "root hair cell differentiation" evidence=RCA

TAIR|locus:2200527 WAKL6 "wall associated kinase-like 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 315 (115.9 bits), Expect = 4.9e-40, Sum P(2) = 4.9e-40
 Identities = 72/176 (40%), Positives = 113/176 (64%)

Query:    40 VGSSWLYSVLKKRNLIGLEGRKNGTQRKFFXXXXXXXXXXXXSKRSGSSDTAKIFTAGEL 99
             +G   LY  +KKR  I     +N   + FF              ++G+ D ++IF++ EL
Sbjct:   373 LGILGLYKFIKKRTRI----IRN---KNFFKRNGGLLLKQQLITKNGNVDMSRIFSSKEL 425

Query:   100 KIATNNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINH 159
             K AT+N++ +R++G+GG GTV+ G L++ + +A+K+S++V + ++E+ IN+VV+LSQINH
Sbjct:   426 KKATDNFSMNRVLGQGGQGTVYKGMLAEGRIVAVKRSKVVGEGKMEEFINEVVLLSQINH 485

Query:   160 RNVVGLLGCCLETEVPLLVNEFV-------KLP--------TISWEVRIRIAAETA 200
             RN+V LLGCCLETEVP+LV E++       +L         T++WEVR+RIA E A
Sbjct:   486 RNIVKLLGCCLETEVPVLVYEYIPNGDLFKRLHEKSESNDYTMTWEVRLRIAIEIA 541

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2019843 WAKL10 "WALL ASSOCIATED KINASE (WAK)-LIKE 10" [Arabidopsis thaliana (taxid:3702)]

 Score = 317 (116.6 bits), Expect = 9.5e-40, Sum P(2) = 9.5e-40
 Identities = 67/174 (38%), Positives = 105/174 (60%)

Query:    41 GSSWLYSVLKKRNLIGLEGRKNGTQRKFFXXXXXXXXXXXXSKRSGSSDTAKIFTAGELK 100
             G  WLY  ++++       R+   ++KFF            +   G+ D+ ++F + EL+
Sbjct:   375 GIYWLYKFIRRQ-------RRLNQKKKFFKRNGGLLLQQQLTTTEGNVDSTRVFNSRELE 427

Query:   101 IATNNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHR 160
              AT N++  R++G GG GTV+ G L D + +A+KKS++V + ++E+ IN+VV+LSQINHR
Sbjct:   428 KATENFSLTRILGEGGQGTVYKGMLVDGRIVAVKKSKVVDEDKLEEFINEVVILSQINHR 487

Query:   161 NVVGLLGCCLETEVPLLVNEFVKLPTI--------------SWEVRIRIAAETA 200
             N+V LLGCCLET+VP+LV EF+    +              +WEVR+RIA + A
Sbjct:   488 NIVKLLGCCLETDVPILVYEFIPNGNLFEHLHDDSDDYTMTTWEVRLRIAVDIA 541

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0004383 "guanylate cyclase activity" evidence=IDA

GO:0006182 "cGMP biosynthetic process" evidence=IDA

GO:0006952 "defense response" evidence=IEP

GO:0009617 "response to bacterium" evidence=IEP

GO:0009620 "response to fungus" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009723 "response to ethylene stimulus" evidence=RCA

TAIR|locus:2019893 RFO1 "RESISTANCE TO FUSARIUM OXYSPORUM 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 308 (113.5 bits), Expect = 1.2e-39, Sum P(2) = 1.2e-39
 Identities = 72/179 (40%), Positives = 111/179 (62%)

Query:    37 GCAVGSSWLYSVLKKRNLIGL--EGRKNGTQRKFFXXXXXXXXXXXXSKRSGSSDTAKIF 94
             G  +G   L+ VL    LI    + RK   +R FF            + R G+  ++KIF
Sbjct:   350 GLVLGFPLLFLVLGIWGLIKFVKKRRKIIRKRMFFKRNGGLLLKQQLTTRGGNVQSSKIF 409

Query:    95 TAGELKIATNNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVL 154
             ++ EL+ AT+N+  +R++G+GG GTV+ G L D + +A+K+S+++ + ++E+ IN+V VL
Sbjct:   410 SSKELEKATDNFNMNRVLGQGGQGTVYKGMLVDGRIVAVKRSKVLDEDKVEEFINEVGVL 469

Query:   155 SQINHRNVVGLLGCCLETEVPLLVNE-------FVKLP------TISWEVRIRIAAETA 200
             SQINHRN+V L+GCCLETEVP+LV E       F +L       T++W+VR+RI+ E A
Sbjct:   470 SQINHRNIVKLMGCCLETEVPILVYEHIPNGDLFKRLHHDSDDYTMTWDVRLRISVEIA 528

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005618 "cell wall" evidence=ISS

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009620 "response to fungus" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.7.11	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	256
cd00180	215	cd00180, PKc, Catalytic domain of Protein Kinases	2e-21
pfam00069	260	pfam00069, Pkinase, Protein kinase domain	2e-21
smart00219	257	smart00219, TyrKc, Tyrosine kinase, catalytic doma	1e-18
smart00220	254	smart00220, S_TKc, Serine/Threonine protein kinase	7e-18
smart00221	258	smart00221, STYKc, Protein kinase; unclassified sp	9e-18
pfam07714	258	pfam07714, Pkinase_Tyr, Protein tyrosine kinase	6e-17
cd05122	253	cd05122, PKc_STE, Catalytic domain of STE family P	2e-16
cd06606	260	cd06606, STKc_MAPKKK, Catalytic domain of the Prot	2e-15
cd00192	262	cd00192, PTKc, Catalytic domain of Protein Tyrosin	4e-15
cd08215	258	cd08215, STKc_Nek, Catalytic domain of the Protein	1e-11
cd05058	262	cd05058, PTKc_Met_Ron, Catalytic domain of the Pro	2e-11
cd06626	264	cd06626, STKc_MEKK4, Catalytic domain of the Prote	4e-11
cd05123	250	cd05123, STKc_AGC, Catalytic domain of AGC family	6e-11
cd06632	258	cd06632, STKc_MEKK1_plant, Catalytic domain of the	4e-10
cd06614	286	cd06614, STKc_PAK, Catalytic domain of the Protein	4e-09
cd05041	251	cd05041, PTKc_Fes_like, Catalytic domain of Fes-li	4e-08
cd05581	280	cd05581, STKc_PDK1, Catalytic domain of the Protei	4e-08
cd05039	256	cd05039, PTKc_Csk_like, Catalytic domain of C-term	5e-08
COG0515	384	COG0515, SPS1, Serine/threonine protein kinase [Ge	6e-08
cd05118	283	cd05118, STKc_CMGC, Catalytic domain of CMGC famil	7e-08
cd08530	256	cd08530, STKc_CNK2-like, Catalytic domain of the P	8e-08
cd05112	256	cd05112, PTKc_Itk, Catalytic domain of the Protein	1e-07
cd06647	293	cd06647, STKc_PAK_I, Catalytic domain of the Prote	1e-07
cd06631	265	cd06631, STKc_YSK4, Catalytic domain of the Protei	1e-07
cd06607	307	cd06607, STKc_TAO, Catalytic domain of the Protein	1e-07
PTZ00426	340	PTZ00426, PTZ00426, cAMP-dependent protein kinase	1e-07
cd07829	282	cd07829, STKc_CDK_like, Catalytic domain of Cyclin	2e-07
cd05084	252	cd05084, PTKc_Fes, Catalytic domain of the Protein	2e-07
cd06612	256	cd06612, STKc_MST1_2, Catalytic domain of the Prot	2e-07
cd07830	283	cd07830, STKc_MAK_like, Catalytic domain of Male g	3e-07
cd05035	273	cd05035, PTKc_Axl_like, Catalytic Domain of Axl-li	5e-07
cd06624	268	cd06624, STKc_ASK, Catalytic domain of the Protein	5e-07
cd06627	254	cd06627, STKc_Cdc7_like, Catalytic domain of Cell	5e-07
cd06655	296	cd06655, STKc_PAK2, Catalytic domain of the Protei	8e-07
cd07833	288	cd07833, STKc_CDKL, Catalytic domain of Cyclin-Dep	9e-07
cd05085	250	cd05085, PTKc_Fer, Catalytic domain of the Protein	9e-07
cd05074	273	cd05074, PTKc_Tyro3, Catalytic domain of the Prote	3e-06
cd06648	285	cd06648, STKc_PAK_II, Catalytic domain of the Prot	4e-06
cd08224	267	cd08224, STKc_Nek6_Nek7, Catalytic domain of the P	5e-06
cd05578	258	cd05578, STKc_Yank1, Catalytic domain of the Prote	5e-06
cd05051	296	cd05051, PTKc_DDR, Catalytic domain of the Protein	5e-06
cd05045	290	cd05045, PTKc_RET, Catalytic domain of the Protein	8e-06
cd06656	297	cd06656, STKc_PAK3, Catalytic domain of the Protei	9e-06
cd06610	267	cd06610, STKc_OSR1_SPAK, Catalytic domain of the P	1e-05
cd08529	256	cd08529, STKc_FA2-like, Catalytic domain of the Pr	1e-05
cd05038	284	cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domai	1e-05
cd07838	287	cd07838, STKc_CDK4_6_like, Catalytic domain of Cyc	1e-05
cd05075	272	cd05075, PTKc_Axl, Catalytic domain of the Protein	2e-05
cd05034	261	cd05034, PTKc_Src_like, Catalytic domain of Src ki	2e-05
cd08217	265	cd08217, STKc_Nek2, Catalytic domain of the Protei	2e-05
cd05057	279	cd05057, PTKc_EGFR_like, Catalytic domain of Epide	2e-05
cd07841	298	cd07841, STKc_CDK7, Catalytic domain of the Serine	2e-05
cd05580	290	cd05580, STKc_PKA, Catalytic domain of the Protein	3e-05
cd05059	256	cd05059, PTKc_Tec_like, Catalytic domain of Tec-li	3e-05
cd08220	256	cd08220, STKc_Nek8, Catalytic domain of the Protei	4e-05
cd06635	317	cd06635, STKc_TAO1, Catalytic domain of the Protei	6e-05
cd05108	316	cd05108, PTKc_EGFR, Catalytic domain of the Protei	6e-05
cd06628	267	cd06628, STKc_MAPKKK_Byr2_like, Catalytic domain o	6e-05
cd06917	277	cd06917, STKc_NAK1_like, Catalytic domain of Funga	6e-05
cd05114	256	cd05114, PTKc_Tec_Rlk, Catalytic domain of the Pro	7e-05
cd06633	313	cd06633, STKc_TAO3, Catalytic domain of the Protei	7e-05
cd05148	261	cd05148, PTKc_Srm_Brk, Catalytic domain of the Pro	7e-05
cd05570	318	cd05570, STKc_PKC, Catalytic domain of the Protein	8e-05
cd05049	280	cd05049, PTKc_Trk, Catalytic domain of the Protein	9e-05
cd06634	308	cd06634, STKc_TAO2, Catalytic domain of the Protei	1e-04
cd07834	330	cd07834, STKc_MAPK, Catalytic domain of the Serine	1e-04
cd05583	288	cd05583, STKc_MSK_N, N-terminal catalytic domain o	1e-04
cd05109	279	cd05109, PTKc_HER2, Catalytic domain of the Protei	1e-04
cd06657	292	cd06657, STKc_PAK4, Catalytic domain of the Protei	1e-04
cd06654	296	cd06654, STKc_PAK1, Catalytic domain of the Protei	1e-04
cd05599	364	cd05599, STKc_NDR_like, Catalytic domain of Nuclea	1e-04
cd08221	256	cd08221, STKc_Nek9, Catalytic domain of the Protei	2e-04
cd07846	286	cd07846, STKc_CDKL2_3, Catalytic domain of the Ser	2e-04
cd07861	285	cd07861, STKc_CDK1_euk, Catalytic domain of the Se	2e-04
cd08225	257	cd08225, STKc_Nek5, Catalytic domain of the Protei	2e-04
cd05070	260	cd05070, PTKc_Fyn_Yrk, Catalytic domain of the Pro	2e-04
cd07832	286	cd07832, STKc_CCRK, Catalytic domain of the Serine	3e-04
cd05069	260	cd05069, PTKc_Yes, Catalytic domain of the Protein	3e-04
cd05097	295	cd05097, PTKc_DDR_like, Catalytic domain of Discoi	3e-04
cd05063	268	cd05063, PTKc_EphR_A2, Catalytic domain of the Pro	3e-04
cd05044	269	cd05044, PTKc_c-ros, Catalytic domain of the Prote	4e-04
cd08228	267	cd08228, STKc_Nek6, Catalytic domain of the Protei	4e-04
cd06608	275	cd06608, STKc_myosinIII_like, Catalytic domain of	4e-04
cd05071	262	cd05071, PTKc_Src, Catalytic domain of the Protein	5e-04
cd05082	256	cd05082, PTKc_Csk, Catalytic domain of the Protein	6e-04
cd05080	283	cd05080, PTKc_Tyk2_rpt2, Catalytic (repeat 2) doma	6e-04
cd05052	263	cd05052, PTKc_Abl, Catalytic domain of the Protein	7e-04
cd07847	286	cd07847, STKc_CDKL1_4, Catalytic domain of the Ser	9e-04
cd06629	272	cd06629, STKc_MAPKKK_Bck1_like, Catalytic domain o	0.001
cd06658	292	cd06658, STKc_PAK5, Catalytic domain of the Protei	0.001
cd05579	265	cd05579, STKc_MAST_like, Catalytic domain of Micro	0.001
cd05060	257	cd05060, PTKc_Syk_like, Catalytic domain of Spleen	0.001
cd06613	262	cd06613, STKc_MAP4K3_like, Catalytic domain of Mit	0.001
cd05033	266	cd05033, PTKc_EphR, Catalytic domain of Ephrin Rec	0.001
cd07853	372	cd07853, STKc_NLK, Catalytic domain of the Serine/	0.001
cd05083	254	cd05083, PTKc_Chk, Catalytic domain of the Protein	0.002
cd05046	275	cd05046, PTK_CCK4, Pseudokinase domain of the Prot	0.002
cd08229	267	cd08229, STKc_Nek7, Catalytic domain of the Protei	0.002
cd05032	277	cd05032, PTKc_InsR_like, Catalytic domain of Insul	0.002
cd05096	304	cd05096, PTKc_DDR1, Catalytic domain of the Protei	0.002
cd06625	263	cd06625, STKc_MEKK3_like, Catalytic domain of MAP/	0.003
cd07840	287	cd07840, STKc_CDK9_like, Catalytic domain of Cycli	0.003
cd05110	303	cd05110, PTKc_HER4, Catalytic domain of the Protei	0.003

>gnl|CDD|173623 cd00180, PKc, Catalytic domain of Protein Kinases

 Score = 88.4 bits (220), Expect = 2e-21
 Identities = 47/160 (29%), Positives = 74/160 (46%), Gaps = 28/160 (17%)

Query: 112 IGRGGYGTVFLG-SLSDNKAIAIKKSRIVYQSQIEQCINKVV-VLSQINHRNVVGLLGCC 169
           +G GG+GTV+L       K +AIK  +    S + + + + + +L ++NH N+V L G  
Sbjct: 1   LGEGGFGTVYLARDKKTGKKVAIKIIKKEDSSSLLEELLREIEILKKLNHPNIVKLYGVF 60

Query: 170 LETEVPLLVNEFV-----------KLPTISWEVRIRIAAETAE-------------DIKS 205
            +     LV E+                +S +  +RI  +  E             D+K 
Sbjct: 61  EDENHLYLVMEYCEGGSLKDLLKENEGKLSEDEILRILLQILEGLEYLHSNGIIHRDLKP 120

Query: 206 INILLDDNYTT-KVCDFGASKLVPIDETQLSTMVQGTLGY 244
            NILLD +    K+ DFG SKL+  D++ L T+V GT  Y
Sbjct: 121 ENILLDSDNGKVKLADFGLSKLLTSDKSLLKTIV-GTPAY 159

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which one kinase activates a second kinase, which in turn, may act on other kinases; this sequential action transmits a signal from the cell surface to target proteins, which results in cellular responses. The PK family is one of the largest known protein families with more than 100 homologous yeast enzymes and 550 human proteins. A fraction of PK family members are pseudokinases that lack crucial residues for catalytic activity. The mutiplicity of kinases allows for specific regulation according to substrate, tissue distribution, and cellular localization. PKs regulate many cellular processes including proliferation, division, differentiation, motility, survival, metabolism, cell-cycle progression, cytoskeletal rearrangement, immunity, and neuronal functions. Many kinases are implicated in the development of various human diseases including different types of cancer. Length = 215

>gnl|CDD|215690 pfam00069, Pkinase, Protein kinase domain

 Score = 89.6 bits (223), Expect = 2e-21
 Identities = 40/165 (24%), Positives = 72/165 (43%), Gaps = 27/165 (16%)

Query: 106 YAYDRMIGRGGYGTVFLGS-LSDNKAIAIKKSRIVYQS--QIEQCINKVVVLSQINHRNV 162
           Y   R +G G +GTV+        K +A+K  +   +   + +    ++ +L +++H N+
Sbjct: 1   YELLRKLGSGSFGTVYKAKHKGTGKIVAVKILKKRSEKSKKDQTARREIRILRRLSHPNI 60

Query: 163 VGLLGCCLETEVPLLVNEFV----------KLPTISWEVRIRIAAETAE----------- 201
           V L+    + +   LV E+           +   +S +   +IA +              
Sbjct: 61  VRLIDAFEDKDHLYLVMEYCEGGDLFDYLSRGGPLSEDEAKKIALQILRGLEYLHSNGII 120

Query: 202 --DIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTLGY 244
             D+K  NILLD+N   K+ DFG +K +    + L+T V GT  Y
Sbjct: 121 HRDLKPENILLDENGVVKIADFGLAKKLLKSSSSLTTFV-GTPWY 164

Length = 260

>gnl|CDD|197581 smart00219, TyrKc, Tyrosine kinase, catalytic domain

 Score = 81.8 bits (203), Expect = 1e-18
 Identities = 37/153 (24%), Positives = 67/153 (43%), Gaps = 30/153 (19%)

Query: 109 DRMIGRGGYGTVFLGSLSDNK-----AIAIKKSRIVYQ-SQIEQCINKVVVLSQINHRNV 162
            + +G G +G V+ G L          +A+K  +      QIE+ + +  ++ +++H NV
Sbjct: 4   GKKLGEGAFGEVYKGKLKGKGGKKKVEVAVKTLKEDASEQQIEEFLREARIMRKLDHPNV 63

Query: 163 VGLLGCCLETEVPLLVNEFVKL-----------PTISWEVRIRIAAETAE---------- 201
           V LLG C E E   +V E+++            P +S    +  A + A           
Sbjct: 64  VKLLGVCTEEEPLYIVMEYMEGGDLLSYLRKNRPKLSLSDLLSFALQIARGMEYLESKNF 123

Query: 202 ---DIKSINILLDDNYTTKVCDFGASKLVPIDE 231
              D+ + N L+ +N   K+ DFG S+ +  D+
Sbjct: 124 IHRDLAARNCLVGENLVVKISDFGLSRDLYDDD 156

Phosphotransferases. Tyrosine-specific kinase subfamily. Length = 257

>gnl|CDD|214567 smart00220, S_TKc, Serine/Threonine protein kinases, catalytic domain

 Score = 79.9 bits (198), Expect = 7e-18
 Identities = 38/161 (23%), Positives = 64/161 (39%), Gaps = 29/161 (18%)

Query: 110 RMIGRGGYGTVFLG-SLSDNKAIAIKKSRIVYQSQIEQCINK-VVVLSQINHRNVVGLLG 167
             +G G +G V+L       K +AIK  +     +  + I + + +L ++ H N+V L  
Sbjct: 5   EKLGEGSFGKVYLARDKKTGKLVAIKVIKKKKIKKDRERILREIKILKKLKHPNIVRLYD 64

Query: 168 CCLETEVPLLVNEFV----------KLPTISWEVRIR-IAAETAE-------------DI 203
              + +   LV E+           K   +S E   R    +                D+
Sbjct: 65  VFEDEDKLYLVMEYCEGGDLFDLLKKRGRLS-EDEARFYLRQILSALEYLHSKGIVHRDL 123

Query: 204 KSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTLGY 244
           K  NILLD++   K+ DFG ++   +D  +  T   GT  Y
Sbjct: 124 KPENILLDEDGHVKLADFGLARQ--LDPGEKLTTFVGTPEY 162

Phosphotransferases. Serine or threonine-specific kinase subfamily. Length = 254

>gnl|CDD|214568 smart00221, STYKc, Protein kinase; unclassified specificity

 Score = 79.5 bits (197), Expect = 9e-18
 Identities = 35/154 (22%), Positives = 67/154 (43%), Gaps = 31/154 (20%)

Query: 109 DRMIGRGGYGTVFLGSLSDNKA-----IAIKKSRIVYQ-SQIEQCINKVVVLSQINHRNV 162
            + +G G +G V+ G+L          +A+K  +      QIE+ + +  ++ +++H N+
Sbjct: 4   GKKLGEGAFGEVYKGTLKGKGDGKEVEVAVKTLKEDASEQQIEEFLREARIMRKLDHPNI 63

Query: 163 VGLLGCCLETEVPLLVNEFVKL------------PTISWEVRIRIAAETAE--------- 201
           V LLG C E E  ++V E++                +S    +  A + A          
Sbjct: 64  VKLLGVCTEEEPLMIVMEYMPGGDLLDYLRKNRPKELSLSDLLSFALQIARGMEYLESKN 123

Query: 202 ----DIKSINILLDDNYTTKVCDFGASKLVPIDE 231
               D+ + N L+ +N   K+ DFG S+ +  D+
Sbjct: 124 FIHRDLAARNCLVGENLVVKISDFGLSRDLYDDD 157

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase. Length = 258

>gnl|CDD|219530 pfam07714, Pkinase_Tyr, Protein tyrosine kinase

 Score = 77.5 bits (192), Expect = 6e-17
 Identities = 31/158 (19%), Positives = 68/158 (43%), Gaps = 30/158 (18%)

Query: 109 DRMIGRGGYGTVFLGSL-----SDNKAIAIKKSRIVY-QSQIEQCINKVVVLSQINHRNV 162
            + +G G +G V+ G+L          +A+K  +    + + E+ + +  ++ +++H N+
Sbjct: 4   GKKLGEGAFGEVYKGTLKGDGEGTETKVAVKTLKEGASEEEREEFLEEASIMKKLSHPNI 63

Query: 163 VGLLGCCLETEVPLLVNEFVKL-----------PTISWEVRIRIAAETA------EDIKS 205
           V LLG C + E   +V E++               ++ +  +++A + A      E    
Sbjct: 64  VRLLGVCTQGEPLYIVTEYMPGGDLLDFLRKHGEKLTLKDLLQMALQIAKGMEYLESKNF 123

Query: 206 I-------NILLDDNYTTKVCDFGASKLVPIDETQLST 236
           +       N L+ +N   K+ DFG S+ +  D+     
Sbjct: 124 VHRDLAARNCLVTENLVVKISDFGLSRDIYEDDYYRKR 161

Length = 258

>gnl|CDD|173659 cd05122, PKc_STE, Catalytic domain of STE family Protein Kinases

 Score = 76.1 bits (188), Expect = 2e-16
 Identities = 43/160 (26%), Positives = 70/160 (43%), Gaps = 27/160 (16%)

Query: 110 RMIGRGGYGTVFLG-SLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGC 168
             IG+GG+G V+        K +AIK  ++  + + E+ IN++ +L +  H N+V   G 
Sbjct: 6   EKIGKGGFGEVYKARHKRTGKEVAIKVIKLESKEKKEKIINEIQILKKCKHPNIVKYYGS 65

Query: 169 CLETEVPLLVNEFVKLPTISWEVRIR--------IAAETAE----------------DIK 204
            L+ +   +V EF    ++   ++          IA    E                DIK
Sbjct: 66  YLKKDELWIVMEFCSGGSLKDLLKSTNQTLTESQIAYVCKELLKGLEYLHSNGIIHRDIK 125

Query: 205 SINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTLGY 244
           + NILL  +   K+ DFG S  +  D    +TMV GT  +
Sbjct: 126 AANILLTSDGEVKLIDFGLSAQL-SDTKARNTMV-GTPYW 163

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and activated by a MAPKK, which itself is phosphorylated and activated by a MAPKKK. Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAPKKK to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. Other STE family members include p21-activated kinases (PAKs) and class III myosins, among others. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain, which can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, as well as autophosphorylate the C-terminal motor domain. They play an important role in maintaining the structural integrity of photoreceptor cell microvilli. Length = 253

>gnl|CDD|173724 cd06606, STKc_MAPKKK, Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

 Score = 73.7 bits (182), Expect = 2e-15
 Identities = 45/170 (26%), Positives = 75/170 (44%), Gaps = 38/170 (22%)

Query: 110 RMIGRGGYGTVFLG-SLSDNKAIAIKKSRIVY--QSQIEQCINKVVVLSQINHRNVVGLL 166
            ++GRG +G+V+L       + +A+K   +    + ++E    ++ +LS + H N+V   
Sbjct: 6   ELLGRGSFGSVYLALDKDTGELMAVKSVELSGDSEEELEALEREIRILSSLQHPNIVRYY 65

Query: 167 GCCLETE-----VPL----------LVNEFVKLPTISWEVRIRI-AAETAE--------- 201
           G   + E     + L          L+ +F KLP    E  IR    +  E         
Sbjct: 66  GSERDEEKNTLNIFLEYVSGGSLSSLLKKFGKLP----EPVIRKYTRQILEGLAYLHSNG 121

Query: 202 ----DIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTM-VQGTLGYYL 246
               DIK  NIL+D +   K+ DFG +K +   ET   T  V+GT  Y++
Sbjct: 122 IVHRDIKGANILVDSDGVVKLADFGCAKRLGDIETGEGTGSVRGTP-YWM 170

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKKK5) and ASK2 (or MAPKKK6), MEKK1, MEKK2, MEKK3, MEKK4, as well as plant and fungal MAPKKKs. Also included in this subfamily are the cell division control proteins Schizosaccharomyces pombe Cdc7 and Saccharomyces cerevisiae Cdc15. Length = 260

>gnl|CDD|173624 cd00192, PTKc, Catalytic domain of Protein Tyrosine Kinases

 Score = 72.6 bits (179), Expect = 4e-15
 Identities = 36/159 (22%), Positives = 66/159 (41%), Gaps = 37/159 (23%)

Query: 110 RMIGRGGYGTVFLGSLSDNK----AIAIKKSRIVYQ-SQIEQCINKVVVLSQINHRNVVG 164
           + +G G +G V+ G L         +A+K  +      + +  + +  V+ ++ H NVV 
Sbjct: 1   KKLGEGAFGEVYKGKLKGKDGKTTEVAVKTLKEDASEEERKDFLKEARVMKKLGHPNVVR 60

Query: 165 LLGCCLETEVPLLVNEFVK-------------------LPTISWEVRIRIAAETAE---- 201
           LLG C E E   LV E+++                     T+S +  +  A + A+    
Sbjct: 61  LLGVCTEEEPLYLVLEYMEGGDLLDYLRKSRPVFPSPEKSTLSLKDLLSFAIQIAKGMEY 120

Query: 202 ---------DIKSINILLDDNYTTKVCDFGASKLVPIDE 231
                    D+ + N L+ ++   K+ DFG S+ V  D+
Sbjct: 121 LASKKFVHRDLAARNCLVGEDLVVKISDFGLSRDVYDDD 159

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain, leading to intracellular signaling. Some RTKs are orphan receptors with no known ligands. Non-receptor (or cytoplasmic) tyr kinases are distributed in different intracellular compartments and are usually multi-domain proteins containing a catalytic tyr kinase domain as well as various regulatory domains such as SH3 and SH2. PTKs are usually autoinhibited and require a mechanism for activation. In many PTKs, the phosphorylation of tyr residues in the activation loop is essential for optimal activity. Aberrant expression of PTKs is associated with many development abnormalities and cancers. Length = 262

>gnl|CDD|173755 cd08215, STKc_Nek, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

 Score = 62.5 bits (153), Expect = 1e-11
 Identities = 43/172 (25%), Positives = 71/172 (41%), Gaps = 32/172 (18%)

Query: 105 NYAYDRMIGRGGYGTVFLG-SLSDNKAIAIKKSRIVYQSQIEQ--CINKVVVLSQINHRN 161
            Y   + IG+G +G V+L    SD K   +K+  +   S+ E+   +N+V +L ++NH N
Sbjct: 1   KYEIIKQIGKGSFGKVYLVRRKSDGKLYVLKEIDLSNMSEKEREDALNEVKILKKLNHPN 60

Query: 162 VVGLLGCCLETEVPLLVNEFVKLPTISWEVRIRIAAET--AED----------------- 202
           ++       E     +V E+     +S +++ +        E+                 
Sbjct: 61  IIKYYESFEEKGKLCIVMEYADGGDLSQKIKKQKKEGKPFPEEQILDWFVQLCLALKYLH 120

Query: 203 --------IKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTLGYYL 246
                   IK  NI L  N   K+ DFG SK++      L+  V GT  YYL
Sbjct: 121 SRKILHRDIKPQNIFLTSNGLVKLGDFGISKVL-SSTVDLAKTVVGTP-YYL 170

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Length = 258

>gnl|CDD|133189 cd05058, PTKc_Met_Ron, Catalytic domain of the Protein Tyrosine Kinases, Met and Ron

 Score = 62.1 bits (151), Expect = 2e-11
 Identities = 43/146 (29%), Positives = 75/146 (51%), Gaps = 30/146 (20%)

Query: 110 RMIGRGGYGTVFLGSLSDNKAI----AIKK-SRIVYQSQIEQCINKVVVLSQINHRNVVG 164
           R+IG+G +G V+ G+L D+       A+K  +RI    ++EQ + + +++   +H NV+ 
Sbjct: 1   RVIGKGHFGCVYHGTLIDSDGQKIHCAVKSLNRITDLEEVEQFLKEGIIMKDFSHPNVLS 60

Query: 165 LLGCCLETE-VPLLV---------NEFVKLPTISWEVRIRI-----AAETAE-------- 201
           LLG CL +E  PL+V           F++  T +  V+  I      A+  E        
Sbjct: 61  LLGICLPSEGSPLVVLPYMKHGDLRNFIRSETHNPTVKDLIGFGLQVAKGMEYLASKKFV 120

Query: 202 --DIKSINILLDDNYTTKVCDFGASK 225
             D+ + N +LD+++T KV DFG ++
Sbjct: 121 HRDLAARNCMLDESFTVKVADFGLAR 146

Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also called the HGF receptor. HGF/Met signaling plays a role in growth, transformation, cell motility, invasion, metastasis, angiogenesis, wound healing, and tissue regeneration. Aberrant expression of Met through mutations or gene amplification is associated with many human cancers including hereditary papillary renal and gastric carcinomas. The ligand for Ron is macrophage stimulating protein (MSP). Ron signaling is important in regulating cell motility, adhesion, proliferation, and apoptosis. Aberrant Ron expression is implicated in tumorigenesis and metastasis. Length = 262

>gnl|CDD|132957 cd06626, STKc_MEKK4, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

 Score = 61.2 bits (149), Expect = 4e-11
 Identities = 39/158 (24%), Positives = 63/158 (39%), Gaps = 26/158 (16%)

Query: 112 IGRGGYGTVFLG-SLSDNKAIAIKKSRIV--YQSQIEQCINKVVVLSQINHRNVVGLLGC 168
           IG G +G V+   +L   + +A+K+ RI       I++  +++ VL  + H N+V   G 
Sbjct: 8   IGGGTFGKVYTAVNLDTGELMAVKEIRIQDNDPKTIKEIADEMKVLELLKHPNLVKYYGV 67

Query: 169 CLETEVPLLVNEFVKLPTISWEVRI-RIAAETA----------------------EDIKS 205
            +  E   +  E+    T+   +   RI  E                         DIK 
Sbjct: 68  EVHREKVYIFMEYCSGGTLEELLEHGRILDEHVIRVYTLQLLEGLAYLHSHGIVHRDIKP 127

Query: 206 INILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTLG 243
            NI LD N   K+ DFG +  +  + T +   VQ   G
Sbjct: 128 ANIFLDHNGVIKLGDFGCAVKLKNNTTTMGEEVQSLAG 165

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4/MKK7 and MKK3/MKK6. JNK and p38 are collectively known as stress-activated MAPKs, as they are activated in response to a variety of environmental stresses and pro-inflammatory cytokines. MEKK4 also plays roles in the re-polarization of the actin cytoskeleton in response to osmotic stress, in the proper closure of the neural tube, in cardiovascular development, and in immune responses. Length = 264

>gnl|CDD|173660 cd05123, STKc_AGC, Catalytic domain of AGC family Protein Serine/Threonine Kinases

 Score = 60.6 bits (148), Expect = 6e-11
 Identities = 48/162 (29%), Positives = 73/162 (45%), Gaps = 32/162 (19%)

Query: 112 IGRGGYGTVFLGS-LSDNKAIAIK---KSRIVYQSQIEQCINKVVVLSQINHRNVVGLLG 167
           +G+G +G V L       K  A+K   K +I+ + ++E  + +  +LS+INH  +V L  
Sbjct: 1   LGKGSFGKVLLVRKKDTGKLYAMKVLKKKKIIKRKEVEHTLTERNILSRINHPFIVKLH- 59

Query: 168 CCLETEVPL-LVNEFV----------KLPTISWEVRIR-IAAETAE-------------D 202
              +TE  L LV E+           K    S E R R  AAE                D
Sbjct: 60  YAFQTEEKLYLVLEYAPGGELFSHLSKEGRFS-EERARFYAAEIVLALEYLHSLGIIYRD 118

Query: 203 IKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTLGY 244
           +K  NILLD +   K+ DFG +K +  + ++ +T   GT  Y
Sbjct: 119 LKPENILLDADGHIKLTDFGLAKELSSEGSRTNTFC-GTPEY 159

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the turn motif. Phosphorylation at the A-loop is required of most AGC kinases, which results in a disorder-to-order transition of the A-loop. The ordered conformation results in the access of substrates and ATP to the active site. A subset of AGC kinases with C-terminal extensions containing the HM also requires phosphorylation at this site. Phosphorylation at the HM allows the C-terminal extension to form an ordered structure that packs into the hydrophobic pocket of the catalytic domain, which then reconfigures the kinase into an active bi-lobed state. In addition, growth factor-activated AGC kinases such as PKB, p70S6K, RSK, MSK, PKC, and SGK, require phosphorylation at the turn motif (also called tail or zipper site), located N-terminal to the HM at the C-terminal extension. AGC kinases regulate many cellular processes including division, growth, survival, metabolism, motility, and differentiation. Many are implicated in the development of various human diseases. Length = 250

>gnl|CDD|132963 cd06632, STKc_MEKK1_plant, Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

 Score = 58.2 bits (141), Expect = 4e-10
 Identities = 38/147 (25%), Positives = 64/147 (43%), Gaps = 29/147 (19%)

Query: 110 RMIGRGGYGTVFLG-SLSDNKAIAIKKSRIVYQSQ-----IEQCINKVVVLSQINHRNVV 163
            ++G G +G+V+ G +L D    A+K+  +    Q     ++Q   ++ +LS++ H N+V
Sbjct: 6   ELLGSGSFGSVYEGLNLDDGDFFAVKEVSLADDGQTGQEAVKQLEQEIALLSKLQHPNIV 65

Query: 164 GLLGCCLETEVPLLVNEFVKLPTIS---------WEVRIRIAAE--------------TA 200
             LG   E +   +  E V   +++          E  IR+                   
Sbjct: 66  QYLGTEREEDNLYIFLELVPGGSLAKLLKKYGSFPEPVIRLYTRQILLGLEYLHDRNTVH 125

Query: 201 EDIKSINILLDDNYTTKVCDFGASKLV 227
            DIK  NIL+D N   K+ DFG +K V
Sbjct: 126 RDIKGANILVDTNGVVKLADFGMAKQV 152

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidopsis thaliana MEKK1 activates MPK4, a MAPK that regulates systemic acquired resistance. MEKK1 also participates in the regulation of temperature-sensitive and tissue-specific cell death. Length = 258

>gnl|CDD|173728 cd06614, STKc_PAK, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

 Score = 55.7 bits (135), Expect = 4e-09
 Identities = 42/167 (25%), Positives = 67/167 (40%), Gaps = 49/167 (29%)

Query: 111 MIGRGGYGTVFLG-SLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCC 169
            IG G  G V+     +  K +AIKK R+  Q   E  IN+++++    H N+V      
Sbjct: 26  KIGEGASGEVYKATDRATGKEVAIKKMRLRKQ-NKELIINEILIMKDCKHPNIVDYYDSY 84

Query: 170 LETEVPLLVNEF--------------VKLPTISWEVRI-RIAAETAE------------- 201
           L  +   +V E+              V++     E +I  +  E  +             
Sbjct: 85  LVGDELWVVMEYMDGGSLTDIITQNFVRMN----EPQIAYVCREVLQGLEYLHSQNVIHR 140

Query: 202 DIKSINILLDDNYTTKVCDFGASKLVPIDETQLS-------TMVQGT 241
           DIKS NILL  + + K+ DFG +        QL+       ++V GT
Sbjct: 141 DIKSDNILLSKDGSVKLADFGFA-------AQLTKEKSKRNSVV-GT 179

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). Group II PAKs contain a PBD and a catalytic domain, but lack other motifs found in group I PAKs. Since group II PAKs do not contain an obvious AID, they may be regulated differently from group I PAKs. Group I PAKs interact with the SH3 containing proteins Nck, Grb2 and PIX; no such binding has been demonstrated for group II PAKs. Length = 286

>gnl|CDD|173629 cd05041, PTKc_Fes_like, Catalytic domain of Fes-like Protein Tyrosine Kinases

 Score = 52.5 bits (126), Expect = 4e-08
 Identities = 35/141 (24%), Positives = 59/141 (41%), Gaps = 25/141 (17%)

Query: 110 RMIGRGGYGTVFLGSLSDNKAIAIKKSRI-VYQSQIEQCINKVVVLSQINHRNVVGLLGC 168
             IG+G +G V+ G L  N  +A+K  R  +      + + +  +L Q +H N+V L+G 
Sbjct: 1   EKIGKGNFGDVYKGVLKGNTEVAVKTCRSTLPPDLKRKFLQEAEILKQYDHPNIVKLIGV 60

Query: 169 CLETEVPLLVNEFV--------------KLPTISWEVRIRIAAETAE----------DIK 204
           C++ +   +V E V              +L           AA   E          D+ 
Sbjct: 61  CVQKQPIYIVMELVPGGSLLTFLRKKKNRLTVKKLLQMSLDAAAGMEYLESKNCIHRDLA 120

Query: 205 SINILLDDNYTTKVCDFGASK 225
           + N L+ +N   K+ DFG S+
Sbjct: 121 ARNCLVGENNVLKISDFGMSR 141

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes and Fer kinases play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Fes and Fer show redundancy in their biological functions. Length = 251

>gnl|CDD|173672 cd05581, STKc_PDK1, Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

 Score = 52.6 bits (127), Expect = 4e-08
 Identities = 36/156 (23%), Positives = 68/156 (43%), Gaps = 28/156 (17%)

Query: 104 NNYAYDRMIGRGGYGTVFLGSL-SDNKAIAIK---KSRIVYQSQIEQCINKVVVLSQIN- 158
           +++ + ++IG G + TV L      NK  AIK   K +++ + +++    +  VL+++N 
Sbjct: 1   DDFKFGKIIGEGSFSTVVLAKEKETNKEYAIKILDKRQLIKEKKVKYVKIEKEVLTRLNG 60

Query: 159 HRNVVGLLGCCLETEVPLLVNEFV----------KLPTISWEVRIRIAAETAE------- 201
           H  ++ L     + E    V E+           K  ++  +     AAE          
Sbjct: 61  HPGIIKLYYTFQDEENLYFVLEYAPNGELLQYIRKYGSLDEKCTRFYAAEILLALEYLHS 120

Query: 202 ------DIKSINILLDDNYTTKVCDFGASKLVPIDE 231
                 D+K  NILLD +   K+ DFG +K++  + 
Sbjct: 121 KGIIHRDLKPENILLDKDMHIKITDFGTAKVLDPNS 156

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to autophosphorylate and is constitutively active in mammalian cells. PDK1 is essential for normal embryo development and is important in regulating cell volume. Length = 280

>gnl|CDD|133171 cd05039, PTKc_Csk_like, Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

 Score = 52.0 bits (125), Expect = 5e-08
 Identities = 33/139 (23%), Positives = 62/139 (44%), Gaps = 27/139 (19%)

Query: 112 IGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLE 171
           IG+G +G V LG     K +A+K  +    +  +  + +  V++ + H N+V LLG  L+
Sbjct: 14  IGKGEFGDVMLGDYRGQK-VAVKCLKDD-STAAQAFLAEASVMTTLRHPNLVQLLGVVLQ 71

Query: 172 TEVPLLVNEFVK-------LPT-----ISWEVRIRIAAETAE-------------DIKSI 206
                +V E++        L +     I+   ++  A +  E             D+ + 
Sbjct: 72  GNPLYIVTEYMAKGSLVDYLRSRGRAVITLAQQLGFALDVCEGMEYLEEKNFVHRDLAAR 131

Query: 207 NILLDDNYTTKVCDFGASK 225
           N+L+ ++   KV DFG +K
Sbjct: 132 NVLVSEDLVAKVSDFGLAK 150

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, resulting in their inactivation. Chk inhibit Src kinases using a noncatalytic mechanism by simply binding to them. As negative regulators of Src kinases, Csk and Chk play important roles in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. Length = 256

>gnl|CDD|223589 COG0515, SPS1, Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

 Score = 52.4 bits (124), Expect = 6e-08
 Identities = 43/174 (24%), Positives = 70/174 (40%), Gaps = 34/174 (19%)

Query: 105 NYAYDRMIGRGGYGTVFLGSLSDNKAI-AIKKSRIVYQSQIEQCINKVVVLSQINH-RNV 162
           +Y   R +G G +G V+L       A+  + K       ++E+ + ++ +L+ +NH  N+
Sbjct: 1   SYRILRKLGEGSFGEVYLARDRKLVALKVLAKKLESKSKEVERFLREIQILASLNHPPNI 60

Query: 163 VGLLGCCLETEVPLLVNEFVK-------------LPTISWEVRIRIAAETAE-------- 201
           V L     +     LV E+V                 +S    + I A+           
Sbjct: 61  VKLYDFFQDEGSLYLVMEYVDGGSLEDLLKKIGRKGPLSESEALFILAQILSALEYLHSK 120

Query: 202 -----DIKSINILLDDNYT-TKVCDFGASKLVPIDET-----QLSTMVQGTLGY 244
                DIK  NILLD +    K+ DFG +KL+P   +      L +   GT GY
Sbjct: 121 GIIHRDIKPENILLDRDGRVVKLIDFGLAKLLPDPGSTSSIPALPSTSVGTPGY 174

Length = 384

>gnl|CDD|143333 cd05118, STKc_CMGC, Catalytic domain of CMGC family Serine/Threonine Kinases

 Score = 51.9 bits (125), Expect = 7e-08
 Identities = 31/143 (21%), Positives = 56/143 (39%), Gaps = 28/143 (19%)

Query: 112 IGRGGYGTVFLG-SLSDNKAIAIKKSRIVYQSQIEQCIN--KVVVLSQINHRNVVGLLGC 168
           IG G YG V+        + +AIKK ++ ++S+        ++ +L ++NH N++ LL  
Sbjct: 7   IGEGTYGVVYKARDKLTGEIVAIKKIKLRFESEGIPKTALREIKLLKELNHPNIIKLLDV 66

Query: 169 CLETEVPLLVNEFVKLPTISWEVRIRIAAETAEDIKSI---------------------- 206
                   LV EF+    +   ++ R        IKS                       
Sbjct: 67  FRHKGDLYLVFEFMDT-DLYKLIKDRQRGLPESLIKSYLYQLLQGLAFCHSHGILHRDLK 125

Query: 207 --NILLDDNYTTKVCDFGASKLV 227
             N+L++     K+ DFG ++  
Sbjct: 126 PENLLINTEGVLKLADFGLARSF 148

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Length = 283

>gnl|CDD|173772 cd08530, STKc_CNK2-like, Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

 Score = 51.7 bits (124), Expect = 8e-08
 Identities = 40/150 (26%), Positives = 66/150 (44%), Gaps = 40/150 (26%)

Query: 112 IGRGGYGTVFLGS-LSDNKAIAIKKSRIVYQSQIEQ--CINKVVVLSQINHRNVVG---- 164
           +G+G YG+V+    LSDN+  A+K+  +   SQ E+   +N++ +L+ +NH N++     
Sbjct: 8   LGKGSYGSVYKVKRLSDNQFYALKEVDLGSMSQKEREDAVNEIRILASVNHPNIISYKEA 67

Query: 165 -LLGCCLETEVPLLVNEFVKLPTIS------------------WEVRIRIAAETA----- 200
            L G  L      +V E+     +S                  W + I++          
Sbjct: 68  FLDGNKL-----CIVMEYAPFGDLSKAISKRKKKRKLIPEQEIWRIFIQLLRGLQALHEQ 122

Query: 201 ----EDIKSINILLDDNYTTKVCDFGASKL 226
                D+KS NILL  N   K+ D G SK+
Sbjct: 123 KILHRDLKSANILLVANDLVKIGDLGISKV 152

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, and it regulates cell size, through influencing the size threshold at which cells commit to mitosis. Length = 256

>gnl|CDD|133243 cd05112, PTKc_Itk, Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase

 Score = 51.1 bits (122), Expect = 1e-07
 Identities = 42/149 (28%), Positives = 67/149 (44%), Gaps = 25/149 (16%)

Query: 112 IGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLE 171
           IG G +G V+LG   + + +AIK  R    S+ E  I +  V+ +++H  +V L G C E
Sbjct: 12  IGSGQFGLVWLGYWLEKRKVAIKTIREGAMSE-EDFIEEAQVMMKLSHPKLVQLYGVCTE 70

Query: 172 TEVPLLVNEFVKLPTISWEVRIR---IAAETA---------------------EDIKSIN 207
                LV EF++   +S  +R +    + ET                       D+ + N
Sbjct: 71  RSPICLVFEFMEHGCLSDYLRAQRGKFSQETLLGMCLDVCEGMAYLESSNVIHRDLAARN 130

Query: 208 ILLDDNYTTKVCDFGASKLVPIDETQLST 236
            L+ +N   KV DFG ++ V  D+   ST
Sbjct: 131 CLVGENQVVKVSDFGMTRFVLDDQYTSST 159

Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, Itk contains the Tec homology (TH) domain containing one proline-rich region and a zinc-binding region. Tec kinases are expressed mainly by haematopoietic cells. Itk is expressed in T-cells and mast cells, and is important in their development and differentiation. Of the three Tec kinases expressed in T-cells, Itk plays the predominant role in T-cell receptor (TCR) signaling. It is activated by phosphorylation upon TCR crosslinking and is involved in the pathway resulting in phospholipase C-gamma1 activation and actin polymerization. It also plays a role in the downstream signaling of the T-cell costimulatory receptor CD28, the T-cell surface receptor CD2, and the chemokine receptor CXCR4. In addition, Itk is crucial for the development of T-helper(Th)2 effector responses. Length = 256

>gnl|CDD|132978 cd06647, STKc_PAK_I, Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase

 Score = 51.4 bits (123), Expect = 1e-07
 Identities = 47/159 (29%), Positives = 77/159 (48%), Gaps = 26/159 (16%)

Query: 108 YDRM--IGRGGYGTVFLG-SLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVG 164
           Y R   IG+G  GTV+    ++  + +AIK+  +  Q + E  IN+++V+ +  H N+V 
Sbjct: 21  YTRFEKIGQGASGTVYTAIDVATGQEVAIKQMNLQQQPKKELIINEILVMRENKHPNIVN 80

Query: 165 LLGCCLETEVPLLVNEFV---KLPTISWEVRI---RIAAETAE----------------D 202
            L   L  +   +V E++    L  +  E  +   +IAA   E                D
Sbjct: 81  YLDSYLVGDELWVVMEYLAGGSLTDVVTETCMDEGQIAAVCRECLQALEFLHSNQVIHRD 140

Query: 203 IKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGT 241
           IKS NILL  + + K+ DFG    +  ++++ STMV GT
Sbjct: 141 IKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMV-GT 178

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group I PAKs, also called conventional PAKs, include PAK1, PAK2, and PAK3. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). They interact with the SH3 domain containing proteins Nck, Grb2 and PIX. Binding of group I PAKs to activated GTPases leads to conformational changes that destabilize the AID, allowing autophosphorylation and full activation of the kinase domain. Known group I PAK substrates include MLCK, Bad, Raf, MEK1, LIMK, Merlin, Vimentin, Myc, Stat5a, and Aurora A, among others. Length = 293

>gnl|CDD|132962 cd06631, STKc_YSK4, Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4

 Score = 51.1 bits (122), Expect = 1e-07
 Identities = 36/144 (25%), Positives = 64/144 (44%), Gaps = 29/144 (20%)

Query: 111 MIGRGGYGTVFLGSLSDNKAIAIKK------SRIVYQSQIEQCINKVVVLSQINHRNVVG 164
           ++G+G YGTV+ G  +  + IA+K+      + +  + + E+   +V +L  + H N+V 
Sbjct: 7   VLGKGAYGTVYCGLTNQGQLIAVKQVELDTSNVLAAEKEYEKLQEEVDLLKSLKHVNIVQ 66

Query: 165 LLGCCLETEVPLLVNEFVKLPTISW----------EVRIRIAAETAE------------- 201
            LG CL+     +  EFV   +IS            V  +   +  +             
Sbjct: 67  YLGTCLDDNTISIFMEFVPGGSISSILNRFGPLPEPVFCKYTKQILDGVAYLHNNCVVHR 126

Query: 202 DIKSINILLDDNYTTKVCDFGASK 225
           DIK  N++L  N   K+ DFG ++
Sbjct: 127 DIKGNNVMLMPNGIIKLIDFGCAR 150

Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Length = 265

>gnl|CDD|132938 cd06607, STKc_TAO, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins

 Score = 51.0 bits (122), Expect = 1e-07
 Identities = 45/146 (30%), Positives = 62/146 (42%), Gaps = 29/146 (19%)

Query: 110 RMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVYQSQIEQ---CINKVVVLSQINHRNVVGL 165
           R IG G +G V+       N+ +AIKK     +   E+    I +V  L Q+ H N +  
Sbjct: 21  REIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQQLRHPNTIEY 80

Query: 166 LGCCLETEVPLLVNEFVKLPTIS--WEV------RIRIAAETA----------------E 201
            GC L      LV E+  L + S   EV       + IAA                    
Sbjct: 81  KGCYLREHTAWLVMEYC-LGSASDILEVHKKPLQEVEIAAICHGALQGLAYLHSHERIHR 139

Query: 202 DIKSINILLDDNYTTKVCDFGASKLV 227
           DIK+ NILL +  T K+ DFG++ LV
Sbjct: 140 DIKAGNILLTEPGTVKLADFGSASLV 165

Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily members, named TAO1, TAO2, and TAO3. Length = 307

>gnl|CDD|173616 PTZ00426, PTZ00426, cAMP-dependent protein kinase catalytic subunit; Provisional

 Score = 51.1 bits (122), Expect = 1e-07
 Identities = 50/181 (27%), Positives = 82/181 (45%), Gaps = 30/181 (16%)

Query: 75  YLLQLQLSKRSGSSDTAKIFTAGELKIATNNYAYDRMIGRGGYGTVFLGSLS--DNKAIA 132
           +L  LQL K+  S  T +     + K+   ++ + R +G G +G V L +    D   +A
Sbjct: 3   FLKNLQLHKKKDSDSTKE--PKRKNKMKYEDFNFIRTLGTGSFGRVILATYKNEDFPPVA 60

Query: 133 IK---KSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEFV------- 182
           IK   KS+I+ Q Q++   ++  +L+ INH   V L G   +     LV EFV       
Sbjct: 61  IKRFEKSKIIKQKQVDHVFSERKILNYINHPFCVNLYGSFKDESYLYLVLEFVIGGEFFT 120

Query: 183 ------KLPT---ISWEVRIRIAAETAE-------DIKSINILLDDNYTTKVCDFGASKL 226
                 + P      +  +I +  E  +       D+K  N+LLD +   K+ DFG +K+
Sbjct: 121 FLRRNKRFPNDVGCFYAAQIVLIFEYLQSLNIVYRDLKPENLLLDKDGFIKMTDFGFAKV 180

Query: 227 V 227
           V
Sbjct: 181 V 181

Length = 340

>gnl|CDD|173733 cd07829, STKc_CDK_like, Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

 Score = 50.6 bits (122), Expect = 2e-07
 Identities = 39/174 (22%), Positives = 65/174 (37%), Gaps = 45/174 (25%)

Query: 106 YAYDRMIGRGGYGTVFLG-SLSDNKAIAIKKSRIVYQSQIE----QCINKVVVLSQINHR 160
           Y     +G G YG V+        + +A+KK R+    + E      + ++ +L ++ H 
Sbjct: 1   YEKLEKLGEGTYGVVYKARDKKTGEIVALKKIRLDN--EEEGIPSTALREISLLKELKHP 58

Query: 161 NVVGLLGCCLETEVPLLVNEFV-------------KLPT-----ISWEV----------R 192
           N+V LL          LV E+               L       I +++          R
Sbjct: 59  NIVKLLDVIHTERKLYLVFEYCDMDLKKYLDKRPGPLSPNLIKSIMYQLLRGLAYCHSHR 118

Query: 193 I--RIAAETAEDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTLGY 244
           I  R       D+K  NIL++ +   K+ DFG ++   I     +  V  TL Y
Sbjct: 119 ILHR-------DLKPQNILINRDGVLKLADFGLARAFGIPLRTYTHEVV-TLWY 164

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the early G1 phase by CDK4 or CDK6, the G1/S phase transition by CDK2, or the entry of mitosis by CDK1. They also exhibit overlapping cyclin specificity and functions in certain conditions. Knockout mice with a single CDK deleted remain viable with specific phenotypes, showing that some CDKs can compensate for each other. For example, CDK4 can compensate for the loss of CDK6, however, double knockout mice with both CDK4 and CDK6 deleted die in utero. CDK8 and CDK9 are mainly involved in transcription while CDK5 is implicated in neuronal function. CDK7 plays essential roles in both the cell cycle as a CDK-Activating Kinase (CAK) and in transcription as a component of the general transcription factor TFIIH. Length = 282

>gnl|CDD|173645 cd05084, PTKc_Fes, Catalytic domain of the Protein Tyrosine Kinase, Fes

 Score = 50.4 bits (120), Expect = 2e-07
 Identities = 36/140 (25%), Positives = 63/140 (45%), Gaps = 26/140 (18%)

Query: 112 IGRGGYGTVFLGSL-SDNKAIAIKKSRIVYQSQIE-QCINKVVVLSQINHRNVVGLLGCC 169
           IGRG +G VF G L +DN  +A+K  R      ++ + + +  +L Q +H N+V L+G C
Sbjct: 3   IGRGNFGEVFSGRLRADNTPVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVC 62

Query: 170 LETEVPLLVNEFVK-----------LPTISWEVRIRIAAETA-------------EDIKS 205
            + +   +V E V+            P +  +  I++    A              D+ +
Sbjct: 63  TQKQPIYIVMELVQGGDFLTFLRTEGPRLKVKELIQMVENAAAGMEYLESKHCIHRDLAA 122

Query: 206 INILLDDNYTTKVCDFGASK 225
            N L+ +    K+ DFG S+
Sbjct: 123 RNCLVTEKNVLKISDFGMSR 142

Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular endothelial, epithelial, and neuronal cells. It plays important roles in cell growth and differentiation, angiogenesis, inflammation and immunity, and cytoskeletal regulation. A recent study implicates Fes kinase as a tumor suppressor in colorectal cancer. Length = 252

>gnl|CDD|132943 cd06612, STKc_MST1_2, Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

 Score = 50.3 bits (121), Expect = 2e-07
 Identities = 32/138 (23%), Positives = 59/138 (42%), Gaps = 27/138 (19%)

Query: 112 IGRGGYGTVFLG-SLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCL 170
           +G G YG+V+        + +AIK   +  +  +++ I ++ +L Q +   +V   G   
Sbjct: 11  LGEGSYGSVYKAIHKETGQVVAIKVVPV--EEDLQEIIKEISILKQCDSPYIVKYYGSYF 68

Query: 171 ETEVPLLVNEFVKLPTISWEVRIR--------IAAETAE----------------DIKSI 206
           +     +V E+    ++S  ++I         IAA   +                DIK+ 
Sbjct: 69  KNTDLWIVMEYCGAGSVSDIMKITNKTLTEEEIAAILYQTLKGLEYLHSNKKIHRDIKAG 128

Query: 207 NILLDDNYTTKVCDFGAS 224
           NILL++    K+ DFG S
Sbjct: 129 NILLNEEGQAKLADFGVS 146

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a MAPK kinase) and MEKK1 (a MAPK kinase kinase) by acting as a MAPK kinase kinase kinase (MAPKKKK). Activation of JNK by MST1 leads to caspase activation and apoptosis. MST1 has also been implicated in cell proliferation and differentiation. Krs1 may regulate cell growth arrest and apoptosis in response to cellular stress. Length = 256

>gnl|CDD|173734 cd07830, STKc_MAK_like, Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases

 Score = 49.8 bits (120), Expect = 3e-07
 Identities = 37/142 (26%), Positives = 62/142 (43%), Gaps = 31/142 (21%)

Query: 110 RMIGRGGYGTVFLG-SLSDNKAIAIKKSRIVYQSQIEQCIN--KVVVLSQIN-HRNVVGL 165
           + +G G +G+V+L  +    + +AIKK +  + S  E+C+N  +V  L ++N H N+V L
Sbjct: 5   KQLGDGTFGSVYLARNKETGELVAIKKMKKKFYS-WEECMNLREVKSLRKLNEHPNIVKL 63

Query: 166 LGCCLETEVPLLVNEFV-----------KLPTISWEVRIR-IAAETAE------------ 201
                E +    V E++           K    S E  IR I  +  +            
Sbjct: 64  KEVFRENDELYFVFEYMEGNLYQLMKDRKGKPFS-ESVIRSIIYQILQGLAHIHKHGFFH 122

Query: 202 -DIKSINILLDDNYTTKVCDFG 222
            D+K  N+L+      K+ DFG
Sbjct: 123 RDLKPENLLVSGPEVVKIADFG 144

Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertility. It functions as a coactivator of the androgen receptor in prostate cells. MRK, also called Intestinal Cell Kinase (ICK), is expressed ubiquitously, with highest expression in the ovary and uterus. A missense mutation in MRK causes endocrine-cerebro-osteodysplasia (ECO), suggesting that this protein plays an important role in the development of many organs. MAK and MRK may be involved in regulating cell cycle and cell fate. Ime2p is a meiosis-specific kinase that is important during meiotic initiation and during the later stages of meiosis. Mde3 functions downstream of the transcription factor Mei-4 which is essential for meiotic prophase I. Length = 283

>gnl|CDD|133167 cd05035, PTKc_Axl_like, Catalytic Domain of Axl-like Protein Tyrosine Kinases

 Score = 49.4 bits (118), Expect = 5e-07
 Identities = 37/162 (22%), Positives = 68/162 (41%), Gaps = 47/162 (29%)

Query: 110 RMIGRGGYGTVFLGSLSDNKA----IAIK--KSRIVYQSQIEQCINKVVVLSQINHRNVV 163
           +++G G +G+V  G LS +      +A+K  K  I   S+IE+ +++   +   +H NV+
Sbjct: 5   KILGEGEFGSVMEGQLSQDDGSQLKVAVKTMKLDIHTYSEIEEFLSEAACMKDFDHPNVM 64

Query: 164 GLLGCCLETE------VPLLVNEFVK-------------------LPTISWEVRIRIAAE 198
            L+G C E         P+++  F+K                   LP    +  ++   +
Sbjct: 65  KLIGVCFEASSLQKIPKPMVILPFMKHGDLHSFLLYSRLGGLPEKLPL---QTLLKFMVD 121

Query: 199 TA-------------EDIKSINILLDDNYTTKVCDFGASKLV 227
            A              D+ + N +L ++ T  V DFG SK +
Sbjct: 122 IALGMEYLSNRNFIHRDLAARNCMLREDMTVCVADFGLSKKI 163

Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellular effects including survival, proliferation, migration, and phagocytosis. They are also associated with several types of cancer as well as inflammatory, autoimmune, vascular, and kidney diseases. Mer is named after its original reported expression pattern (monocytes, epithelial, and reproductive tissues). It is required for the ingestion of apoptotic cells by phagocytes such as macrophages, retinal pigment epithelial cells, and dendritic cells. Mer is also important in maintaining immune homeostasis. Length = 273

>gnl|CDD|173730 cd06624, STKc_ASK, Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase

 Score = 49.1 bits (117), Expect = 5e-07
 Identities = 46/170 (27%), Positives = 74/170 (43%), Gaps = 40/170 (23%)

Query: 109 DRMI-GRGGYGTVFLG-SLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLL 166
           +R++ G+G YG V+    LS    IAIK+        ++    ++ + S + HRN+V  L
Sbjct: 12  ERVVLGKGTYGIVYAARDLSTQVRIAIKEIPERDSRYVQPLHEEIALHSYLKHRNIVQYL 71

Query: 167 GCCLET--------EVP------LLVNEFVKL----PTISWEVR-----IRIAAETA--- 200
           G   E         +VP      LL +++  L     TI +  +     ++   +     
Sbjct: 72  GSDSENGFFKIFMEQVPGGSLSALLRSKWGPLKDNEQTIIFYTKQILEGLKYLHDNQIVH 131

Query: 201 EDIKSINILLDDNYT--TKVCDFGASK----LVPIDETQLSTMVQGTLGY 244
            DIK  N+L+ + Y+   K+ DFG SK    + P  ET       GTL Y
Sbjct: 132 RDIKGDNVLV-NTYSGVVKISDFGTSKRLAGINPCTET-----FTGTLQY 175

Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4/MKK7 and MKK3/MKK6. It plays important roles in cytokine and stress responses, as well as in reactive oxygen species (ROS)-mediated cellular responses. ASK1 is implicated in various diseases mediated by oxidative stress including inschemic heart disease, hypertension, vessel injury, brain ischemia, Fanconi anemia, asthma, and pulmonary edema, among others. ASK2 (also called MAPKKK6) functions only in a heteromeric complex with ASK1, and can activate ASK1 by direct phosphorylation. The function of MAPKKK15 is still unknown. Length = 268

>gnl|CDD|173731 cd06627, STKc_Cdc7_like, Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

 Score = 49.2 bits (118), Expect = 5e-07
 Identities = 36/157 (22%), Positives = 68/157 (43%), Gaps = 29/157 (18%)

Query: 112 IGRGGYGTVFLG-SLSDNKAIAIKKSRI--VYQSQIEQCINKVVVLSQINHRNVVGLLGC 168
           IGRG +G V+ G +L     +AIK+  +  + +  ++  + ++ +L  + H N+V  +G 
Sbjct: 8   IGRGAFGVVYKGLNLETGDFVAIKQISLEKIKEEALKSIMQEIDLLKNLKHPNIVKYIGS 67

Query: 169 CLETEVPLLVNEFVK---LPTI-------SWEVRIRIAAETAE-------------DIKS 205
              ++   ++ E+ +   L  I          +      +  +             DIK+
Sbjct: 68  IETSDSLYIILEYAENGSLRQIIKKFGPFPESLVAVYVYQVLQGLAYLHEQGVIHRDIKA 127

Query: 206 INILLDDNYTTKVCDFG-ASKLVPIDETQLSTMVQGT 241
            NIL   +   K+ DFG A+KL   D ++    V GT
Sbjct: 128 ANILTTKDGVVKLADFGVATKL--NDVSKDDASVVGT 162

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast Cdc7 is essential for cell division by playing a key role in the initiation of septum formation and cytokinesis. Budding yeast Cdc15 functions to coordinate mitotic exit with cytokinesis. Arabidopsis MAPKKK epsilon is required for pollen development in the plasma membrane. Length = 254

>gnl|CDD|132986 cd06655, STKc_PAK2, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2

 Score = 48.6 bits (115), Expect = 8e-07
 Identities = 42/156 (26%), Positives = 75/156 (48%), Gaps = 23/156 (14%)

Query: 106 YAYDRMIGRGGYGTVFLGS-LSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVG 164
           Y     IG+G  GTVF    ++  + +AIK+  +  Q + E  IN+++V+ ++ + N+V 
Sbjct: 21  YTRYEKIGQGASGTVFTAIDVATGQEVAIKQINLQKQPKKELIINEILVMKELKNPNIVN 80

Query: 165 LLGCCLETEVPLLVNEFVKLPTISWEV------RIRIAAETAE----------------D 202
            L   L  +   +V E++   +++  V        +IAA   E                D
Sbjct: 81  FLDSFLVGDELFVVMEYLAGGSLTDVVTETCMDEAQIAAVCRECLQALEFLHANQVIHRD 140

Query: 203 IKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMV 238
           IKS N+LL  + + K+ DFG    +  ++++ STMV
Sbjct: 141 IKSDNVLLGMDGSVKLTDFGFCAQITPEQSKRSTMV 176

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). PAK2 plays a role in pro-apoptotic signaling. It is cleaved and activated by caspases leading to morphological changes during apoptosis. PAK2 is also activated in response to a variety of stresses including DNA damage, hyperosmolarity, serum starvation, and contact inhibition, and may play a role in coordinating the stress response. PAK2 also contributes to cancer cell invasion through a mechanism distinct from that of PAK1. Length = 296

>gnl|CDD|143338 cd07833, STKc_CDKL, Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

 Score = 48.5 bits (116), Expect = 9e-07
 Identities = 38/151 (25%), Positives = 60/151 (39%), Gaps = 26/151 (17%)

Query: 104 NNYAYDRMIGRGGYGTVFLGSLSD-NKAIAIKKSRIVYQSQI--EQCINKVVVLSQINHR 160
           N Y    ++G G YG V         + +AIKK +     +   +  + +V VL Q+ H 
Sbjct: 1   NKYEVLGVVGEGAYGVVLKCRNKATGEIVAIKKFKESEDDEDVKKTALREVKVLRQLRHE 60

Query: 161 NVVGLLGCCLETEVPLLVNEFV---------KLPT---------ISWEVRIRIAAETA-- 200
           N+V L           LV E+V           P            W++   IA   +  
Sbjct: 61  NIVNLKEAFRRKGRLYLVFEYVERTLLELLEASPGGLPPDAVRSYIWQLLQAIAYCHSHN 120

Query: 201 ---EDIKSINILLDDNYTTKVCDFGASKLVP 228
               DIK  NIL+ ++   K+CDFG ++ + 
Sbjct: 121 IIHRDIKPENILVSESGVLKLCDFGFARALR 151

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning and memory. Length = 288

>gnl|CDD|133216 cd05085, PTKc_Fer, Catalytic domain of the Protein Tyrosine Kinase, Fer

 Score = 48.5 bits (115), Expect = 9e-07
 Identities = 33/140 (23%), Positives = 66/140 (47%), Gaps = 25/140 (17%)

Query: 111 MIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIE-QCINKVVVLSQINHRNVVGLLGCC 169
           ++G+G +G VF G+L D   +A+K  +     +++ + +++  +L Q +H N+V L+G C
Sbjct: 2   LLGKGNFGEVFKGTLKDKTPVAVKTCKEDLPQELKIKFLSEARILKQYDHPNIVKLIGVC 61

Query: 170 LETEVPLLVNEFV-----------KLPTISWEVRIRIAAETA-------------EDIKS 205
            + +   +V E V           K   +  +  ++ A + A              D+ +
Sbjct: 62  TQRQPIYIVMELVPGGDFLSFLRKKKDELKTKQLVKFALDAAAGMAYLESKNCIHRDLAA 121

Query: 206 INILLDDNYTTKVCDFGASK 225
            N L+ +N   K+ DFG S+
Sbjct: 122 RNCLVGENNVLKISDFGMSR 141

Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-cell interactions mediated by adherens junctions and focal adhesions. Fer kinase also regulates cell cycle progression in malignant cells. Length = 250

>gnl|CDD|133205 cd05074, PTKc_Tyro3, Catalytic domain of the Protein Tyrosine Kinase, Tyro3

 Score = 46.8 bits (111), Expect = 3e-06
 Identities = 38/157 (24%), Positives = 70/157 (44%), Gaps = 41/157 (26%)

Query: 110 RMIGRGGYGTV---FLGSLSDN-KAIAIK--KSRIVYQSQIEQCINKVVVLSQINHRNVV 163
           RM+G+G +G+V    L S   + + +A+K  K+ I   S IE+ + +   + + +H NV+
Sbjct: 5   RMLGKGEFGSVREAQLKSEDGSFQKVAVKMLKADIFSSSDIEEFLREAACMKEFDHPNVI 64

Query: 164 GLLGCCLETE------VPLLVNEFVKLP----------------TISWEVRIRIAAETA- 200
            L+G  L +       +P+++  F+K                  T+  +  +R   + A 
Sbjct: 65  KLIGVSLRSRAKGRLPIPMVILPFMKHGDLHTFLLMSRIGEEPFTLPLQTLVRFMIDIAS 124

Query: 201 ------------EDIKSINILLDDNYTTKVCDFGASK 225
                        D+ + N +L++N T  V DFG SK
Sbjct: 125 GMEYLSSKNFIHRDLAARNCMLNENMTVCVADFGLSK 161

Protein Tyrosine Kinase (PTK) family; Tyro3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyro3 (or Sky) is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Tyro3 is predominantly expressed in the central nervous system and the brain, and functions as a neurotrophic factor. It is also expressed in osteoclasts and has a role in bone resorption. Length = 273

>gnl|CDD|132979 cd06648, STKc_PAK_II, Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase

 Score = 46.7 bits (111), Expect = 4e-06
 Identities = 41/144 (28%), Positives = 62/144 (43%), Gaps = 27/144 (18%)

Query: 112 IGRGGYGTVFLGS-LSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCL 170
           IG G  G V + +  S  + +A+KK  +  Q + E   N+VV++    H N+V +    L
Sbjct: 27  IGEGSTGIVCIATDKSTGRQVAVKKMDLRKQQRRELLFNEVVIMRDYQHPNIVEMYSSYL 86

Query: 171 ETEVPLLVNEFVK---LPTISWEVRI---RIAAETAE----------------DIKSINI 208
             +   +V EF++   L  I    R+   +IA                     DIKS +I
Sbjct: 87  VGDELWVVMEFLEGGALTDIVTHTRMNEEQIATVCLAVLKALSFLHAQGVIHRDIKSDSI 146

Query: 209 LLDDNYTTKVCDFG----ASKLVP 228
           LL  +   K+ DFG     SK VP
Sbjct: 147 LLTSDGRVKLSDFGFCAQVSKEVP 170

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs found in group I PAKs, such as an AID (autoinhibitory domain) and SH3 binding sites. Since group II PAKs do not contain an obvious AID, they may be regulated differently from group I PAKs. While group I PAKs interact with the SH3 containing proteins Nck, Grb2 and PIX, no such binding has been demonstrated for group II PAKs. Some known substrates of group II PAKs are also substrates of group I PAKs such as Raf, BAD, LIMK and GEFH1. Unique group II substrates include MARK/Par-1 and PDZ-RhoGEF. Group II PAKs play important roles in filopodia formation, neuron extension, cytoskeletal organization, and cell survival. Length = 285

>gnl|CDD|173764 cd08224, STKc_Nek6_Nek7, Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7

 Score = 46.3 bits (110), Expect = 5e-06
 Identities = 18/68 (26%), Positives = 37/68 (54%), Gaps = 4/68 (5%)

Query: 103 TNNYAYDRMIGRGGYGTVFLG-SLSDNKAIAIKKSRI---VYQSQIEQCINKVVVLSQIN 158
             N+  ++ IG+G +  V+    L D + +A+KK +I   +     + C+ ++ +L Q++
Sbjct: 1   LGNFKIEKKIGKGQFSVVYKAICLLDGRVVALKKVQIFEMMDAKARQDCLKEIDLLKQLD 60

Query: 159 HRNVVGLL 166
           H NV+  L
Sbjct: 61  HPNVIKYL 68

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may also be regulators of the p70 ribosomal S6 kinase. Length = 267

>gnl|CDD|173669 cd05578, STKc_Yank1, Catalytic domain of the Protein Serine/Threonine Kinase, Yank1

 Score = 46.2 bits (110), Expect = 5e-06
 Identities = 42/168 (25%), Positives = 70/168 (41%), Gaps = 31/168 (18%)

Query: 105 NYAYDRMIGRGGYGTVFLGSLSDNKAI-AIK---KSRIVYQSQIEQCINKVVVLSQINHR 160
           ++   R+IG+G +G V +    D K + A+K   K + V +  +   +N+  +L ++NH 
Sbjct: 1   HFELLRVIGKGAFGKVCIVQKRDTKKMFAMKYMNKQKCVEKGSVRNVLNERRILQELNHP 60

Query: 161 NVVGLLGCCLETEVPLLVNEFV----------KLPTISWEVRIRI-AAETA--------- 200
            +V L     + E   LV + +          +    S E +++    E           
Sbjct: 61  FLVNLWYSFQDEENMYLVVDLLLGGDLRYHLSQKVKFS-EEQVKFWICEIVLALEYLHSK 119

Query: 201 ----EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTLGY 244
                DIK  NILLD+     + DF  +  V  D   L+T   GT GY
Sbjct: 120 GIIHRDIKPDNILLDEQGHVHITDFNIATKVTPD--TLTTSTSGTPGY 165

Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A. Length = 258

>gnl|CDD|173632 cd05051, PTKc_DDR, Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors

 Score = 46.2 bits (110), Expect = 5e-06
 Identities = 23/110 (20%), Positives = 45/110 (40%), Gaps = 34/110 (30%)

Query: 150 KVVVLSQINHRNVVGLLGCCLETEVPLLVNEFVKL---------------------PTIS 188
           +V +LS+++  N+  LLG C       ++ E+++                       ++S
Sbjct: 69  EVKILSRLSDPNIARLLGVCTVDPPLCMIMEYMENGDLNQFLQKHVAETSGLACNSKSLS 128

Query: 189 WEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASK 225
           +   + +A + A              D+ + N L+  NYT K+ DFG S+
Sbjct: 129 FSTLLYMATQIASGMRYLESLNFVHRDLATRNCLVGKNYTIKIADFGMSR 178

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including breast, colon, ovarian, brain, and lung. There is no evidence showing that DDRs act as transforming oncogenes. They are more likely to play a role in the regulation of tumor growth and metastasis. Length = 296

>gnl|CDD|173631 cd05045, PTKc_RET, Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein

 Score = 45.7 bits (108), Expect = 8e-06
 Identities = 27/106 (25%), Positives = 46/106 (43%), Gaps = 20/106 (18%)

Query: 78  QLQLSKRSGSSDTAKIFTAGELKIATNNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSR 137
            L L K  G  +  K+  A   ++           GR GY TV +  L +N +       
Sbjct: 1   NLVLGKTLGEGEFGKVVKATAFRLK----------GRAGYTTVAVKMLKENAS------- 43

Query: 138 IVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEFVK 183
               S++   +++  +L Q+NH +V+ L G C +    LL+ E+ K
Sbjct: 44  ---SSELRDLLSEFNLLKQVNHPHVIKLYGACSQDGPLLLIVEYAK 86

Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leading to autophosphorylation, activation, and intracellular signaling. RET is essential for the development of the sympathetic, parasympathetic and enteric nervous systems, and the kidney. RET disruption by germline mutations causes diseases in humans including congenital aganglionosis of the gastrointestinal tract (Hirschsprung's disease) and three related inherited cancers: multiple endocrine neoplasia type 2A (MEN2A), MEN2B, and familial medullary thyroid carcinoma (FMTC). Length = 290

>gnl|CDD|132987 cd06656, STKc_PAK3, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3

 Score = 45.5 bits (107), Expect = 9e-06
 Identities = 42/150 (28%), Positives = 73/150 (48%), Gaps = 23/150 (15%)

Query: 112 IGRGGYGTVFLG-SLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCL 170
           IG+G  GTV+    ++  + +AIK+  +  Q + E  IN+++V+ +  + N+V  L   L
Sbjct: 27  IGQGASGTVYTAIDIATGQEVAIKQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYL 86

Query: 171 ETEVPLLVNEFV---KLPTISWEVRI---RIAAETAE----------------DIKSINI 208
             +   +V E++    L  +  E  +   +IAA   E                DIKS NI
Sbjct: 87  VGDELWVVMEYLAGGSLTDVVTETCMDEGQIAAVCRECLQALDFLHSNQVIHRDIKSDNI 146

Query: 209 LLDDNYTTKVCDFGASKLVPIDETQLSTMV 238
           LL  + + K+ DFG    +  ++++ STMV
Sbjct: 147 LLGMDGSVKLTDFGFCAQITPEQSKRSTMV 176

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). PAK3 is highly expressed in the brain. It is implicated in neuronal plasticity, synapse formation, dendritic spine morphogenesis, cell cycle progression, neuronal migration, and apoptosis. Inactivating mutations in the PAK3 gene cause X-linked non-syndromic mental retardation, the severity of which depends on the site of the mutation. Length = 297

>gnl|CDD|173726 cd06610, STKc_OSR1_SPAK, Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase

 Score = 45.4 bits (108), Expect = 1e-05
 Identities = 38/150 (25%), Positives = 64/150 (42%), Gaps = 30/150 (20%)

Query: 104 NNYAYDRMIGRGGYGTVFLG-SLSDNKAIAIKKSRI-VYQSQIEQCINKVVVLSQINHRN 161
           ++Y    +IG G    V+    L +N+ +AIK+  +   Q+ +++   +V  +SQ NH N
Sbjct: 1   DDYELIEVIGVGATAVVYAAICLPNNEKVAIKRIDLEKCQTSVDELRKEVQAMSQCNHPN 60

Query: 162 VVGLLGCCLETEVPLLVNEFV-----------KLPTISWEVRIRIAA---ETAE------ 201
           VV      +  +   LV  ++             P    +  I IA    E  +      
Sbjct: 61  VVKYYTSFVVGDELWLVMPYLSGGSLLDIMKSSYPRGGLDEAI-IATVLKEVLKGLEYLH 119

Query: 202 -------DIKSINILLDDNYTTKVCDFGAS 224
                  DIK+ NILL ++ + K+ DFG S
Sbjct: 120 SNGQIHRDIKAGNILLGEDGSVKIADFGVS 149

Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1 and SPAK contain a conserved C-terminal (CCT) domain, which recognizes a unique motif ([RK]FX[VI]) present in their activating kinases (WNK1/WNK4) and their substrates. Length = 267

>gnl|CDD|173771 cd08529, STKc_FA2-like, Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

 Score = 45.2 bits (107), Expect = 1e-05
 Identities = 39/163 (23%), Positives = 70/163 (42%), Gaps = 30/163 (18%)

Query: 112 IGRGGYGTVFLGSLSDNKAI-AIKKSRIVYQSQIEQ--CINKVVVLSQINHRNVVGLLGC 168
           IG+G +G VF      +K + A+K+  +   ++ E+   I++  VL++++   ++     
Sbjct: 8   IGKGSFGVVFKVVRKADKRVYAMKQIDLSKMNRREREEAIDEARVLAKLDSSYIIRYYES 67

Query: 169 CLETEVPLLVNEFVKLPTIS----------------WEVRIRIAAETA---------EDI 203
            L+     +V E+ +   +                 W   I+I    A          DI
Sbjct: 68  FLDKGKLNIVMEYAENGDLHKLLKMQRGRPLPEDQVWRFFIQILLGLAHLHSKKILHRDI 127

Query: 204 KSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTLGYYL 246
           KS+N+ LD     K+ D G +KL+  D T  +  + GT  YYL
Sbjct: 128 KSLNLFLDAYDNVKIGDLGVAKLLS-DNTNFANTIVGT-PYYL 168

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cycle progression. No cellular function has yet been ascribed to CNK4. Length = 256

>gnl|CDD|173628 cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

 Score = 45.1 bits (107), Expect = 1e-05
 Identities = 33/156 (21%), Positives = 64/156 (41%), Gaps = 38/156 (24%)

Query: 110 RMIGRGGYGTVFLGS---LSDNKA--IAIKKSRIVYQSQIEQCIN----KVVVLSQINHR 160
           + +G G +G V L     L DN    +A+K       S  EQ  +    ++ +L  ++H 
Sbjct: 10  KQLGEGHFGKVELCRYDPLGDNTGEQVAVKSLN---HSGEEQHRSDFEREIEILRTLDHE 66

Query: 161 NVVGLLGCCLET--EVPLLVNEFVKL-----------PTISWEVRIRIAAETAE------ 201
           N+V   G C +       L+ E++               I+ +  +  +++  +      
Sbjct: 67  NIVKYKGVCEKPGGRSLRLIMEYLPSGSLRDYLQRHRDQINLKRLLLFSSQICKGMDYLG 126

Query: 202 -------DIKSINILLDDNYTTKVCDFGASKLVPID 230
                  D+ + NIL++     K+ DFG +K++P D
Sbjct: 127 SQRYIHRDLAARNILVESEDLVKISDFGLAKVLPED 162

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jaks are also involved in regulating the surface expression of some cytokine receptors. The Jak-STAT pathway is involved in many biological processes including hematopoiesis, immunoregulation, host defense, fertility, lactation, growth, and embryogenesis. Length = 284

>gnl|CDD|173739 cd07838, STKc_CDK4_6_like, Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases

 Score = 44.9 bits (107), Expect = 1e-05
 Identities = 40/159 (25%), Positives = 65/159 (40%), Gaps = 53/159 (33%)

Query: 112 IGRGGYGTVFLG-SLSDNKAIAIKKSRI------VYQSQIEQCINKVVVLSQI---NHRN 161
           IG G YGTV+    L+  + +A+KK R+      +  S + +    + +L Q+    H N
Sbjct: 7   IGEGAYGTVYKARDLNTGRFVALKKVRVPLSEEGIPLSTLRE----IALLKQLESFEHPN 62

Query: 162 VVGLLGCC----LETEVPL-LVNEFV---------KLPT----------ISWEV------ 191
           +V LL  C     + E+ L LV E V         K P           +  ++      
Sbjct: 63  IVRLLDVCHGPRTDRELKLTLVFEHVDQDLATYLSKCPKPGLPPETIKDLMRQLLRGVDF 122

Query: 192 ----RIRIAAETAEDIKSINILLDDNYTTKVCDFGASKL 226
               RI        D+K  NIL+  +   K+ DFG +++
Sbjct: 123 LHSHRI-----VHRDLKPQNILVTSDGQVKIADFGLARI 156

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both expressed ubiquitously, associate with all three D cyclins (D1, D2 and D3), and phosphorylate the retinoblastoma (pRb) protein. They are also regulated by the INK4 family of inhibitors which associate with either the CDK alone or the CDK/cyclin complex. CDK4 and CDK6 show differences in subcellular localization, sensitivity to some inhibitors, timing in activation, tumor selectivity, and possibly substrate profiles. Although CDK4 and CDK6 seem to show some redundancy, they also have discrete, nonoverlapping functions. CDK6 plays an important role in cell differentiation. Length = 287

>gnl|CDD|173642 cd05075, PTKc_Axl, Catalytic domain of the Protein Tyrosine Kinase, Axl

 Score = 44.6 bits (105), Expect = 2e-05
 Identities = 40/162 (24%), Positives = 74/162 (45%), Gaps = 46/162 (28%)

Query: 107 AYDRMIGRGGYGTVFLGSLSDNKAI---AIK--KSRIVYQSQIEQCINKVVVLSQINHRN 161
           A  + +G G +G+V  G L+ + +I   A+K  K  I  +S++E  +++ V + + +H N
Sbjct: 2   ALGKTLGEGEFGSVMEGQLNQDDSILKVAVKTMKIAICTRSEMEDFLSEAVCMKEFDHPN 61

Query: 162 VVGLLGCCLETE------VPLLVNEFVK-------------------LPTISWEVRIRIA 196
           V+ L+G CL+T        P+++  F+K                   LPT   ++ ++  
Sbjct: 62  VMRLIGVCLQTVESEGYPSPVVILPFMKHGDLHSFLLYSRLGDCPQYLPT---QMLVKFM 118

Query: 197 AETA-------------EDIKSINILLDDNYTTKVCDFGASK 225
            + A              D+ + N +L++N    V DFG SK
Sbjct: 119 TDIASGMEYLSSKSFIHRDLAARNCMLNENMNVCVADFGLSK 160

Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transformed cells. Axl signaling is important in many cellular functions such as survival, anti-apoptosis, proliferation, migration, and adhesion. Axl was originally isolated from patients with chronic myelogenous leukemia and a chronic myeloproliferative disorder. Axl is overexpressed in many human cancers including colon, squamous cell, thyroid, breast, and lung carcinomas. Length = 272

>gnl|CDD|173626 cd05034, PTKc_Src_like, Catalytic domain of Src kinase-like Protein Tyrosine Kinases

 Score = 44.6 bits (106), Expect = 2e-05
 Identities = 36/153 (23%), Positives = 69/153 (45%), Gaps = 36/153 (23%)

Query: 109 DRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGC 168
           +R +G G +G V++G+ +    +A+K  +    S  E  + +  ++ ++ H  +V L   
Sbjct: 11  ERKLGAGQFGEVWMGTWNGTTKVAVKTLKPGTMS-PEAFLQEAQIMKKLRHDKLVQLYAV 69

Query: 169 CLETEVPLLVNEF-----------------VKLPTISWEVRIRIAAETAE---------- 201
           C E E   +V E+                 ++LP +     + +AA+ AE          
Sbjct: 70  CSEEEPIYIVTEYMSKGSLLDFLKSGEGKKLRLPQL-----VDMAAQIAEGMAYLESRNY 124

Query: 202 ---DIKSINILLDDNYTTKVCDFGASKLVPIDE 231
              D+ + NIL+ +N   K+ DFG ++L+  DE
Sbjct: 125 IHRDLAARNILVGENLVCKIADFGLARLIEDDE 157

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. They were identified as the first proto-oncogene products, and they regulate cell adhesion, invasion, and motility in cancer cells and tumor vasculature, contributing to cancer progression and metastasis. Src kinases are overexpressed in a variety of human cancers, making them attractive targets for therapy. They are also implicated in acute inflammatory responses and osteoclast function. Src, Fyn, Yes, and Yrk are widely expressed, while Blk, Lck, Hck, Fgr, and Lyn show a limited expression pattern. Length = 261

>gnl|CDD|173757 cd08217, STKc_Nek2, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

 Score = 44.5 bits (106), Expect = 2e-05
 Identities = 43/174 (24%), Positives = 67/174 (38%), Gaps = 43/174 (24%)

Query: 112 IGRGGYGTVFL-GSLSDNKAIAIKKSRIVYQSQIE----QCINKVVVLSQINHRNVVGLL 166
           IG+G +GTV      SD K +  K+  I Y +  E    Q +++V +L ++ H N+V   
Sbjct: 8   IGKGSFGTVRKVRRKSDGKILVWKE--IDYGNMTEKEKQQLVSEVNILRELKHPNIVRYY 65

Query: 167 G---------------CC----LETEVPLLVNEFVKLP-TISWEVRIRIAAETAE----- 201
                            C    L   +     E   +     W +  ++     E     
Sbjct: 66  DRIIDRSNQTLYIVMEYCEGGDLAQLIQKCKKERKYIEEEFIWRILTQLLLALYECHNRS 125

Query: 202 ---------DIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTLGYYL 246
                    D+K  NI LD N   K+ DFG +K++  D +   T V GT  YY+
Sbjct: 126 DPGNTVLHRDLKPANIFLDANNNVKLGDFGLAKILGHDSSFAKTYV-GT-PYYM 177

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exit. NIMA is involved in nuclear membrane fission. Vertebrate Nek2 is a cell cycle-regulated STK, localized in centrosomes and kinetochores, that regulates centrosome splitting at the G2/M phase. It also interacts with other mitotic kinases such as Polo-like kinase 1 and may play a role in spindle checkpoint. An increase in the expression of the human NEK2 gene is strongly associated with the progression of non-Hodgkin lymphoma. Length = 265

>gnl|CDD|173636 cd05057, PTKc_EGFR_like, Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases

 Score = 44.3 bits (105), Expect = 2e-05
 Identities = 40/174 (22%), Positives = 74/174 (42%), Gaps = 38/174 (21%)

Query: 91  AKIFTAGELKIATNNYAYDRMIGRGGYGTVFLG----SLSDNK-AIAIKKSR-IVYQSQI 144
            +I    EL+         +++G G +GTV+ G         K  +AIK  R        
Sbjct: 1   LRILKETELEKI-------KVLGSGAFGTVYKGVWIPEGEKVKIPVAIKVLREETSPKAN 53

Query: 145 EQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEFVKLPTI----------------- 187
           ++ +++  V++ ++H +VV LLG CL +    L+ + + L  +                 
Sbjct: 54  KEILDEAYVMASVDHPHVVRLLGICL-SSQVQLITQLMPLGCLLDYVRNHKDNIGSQYLL 112

Query: 188 SWEVRIRIAAETAE-------DIKSINILLDDNYTTKVCDFGASKLVPIDETQL 234
           +W V+I       E       D+ + N+L+      K+ DFG +KL+ +DE + 
Sbjct: 113 NWCVQIAKGMSYLEEKRLVHRDLAARNVLVKTPQHVKITDFGLAKLLDVDEKEY 166

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, resulting in the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. Collectively, they can recognize a variety of ligands including EGF, TGFalpha, and neuregulins, among others. All four subfamily members can form homo- or heterodimers. HER3 contains an impaired kinase domain and depends on its heterodimerization partner for activation. EGFR subfamily members are involved in signaling pathways leading to a broad range of cellular responses including cell proliferation, differentiation, migration, growth inhibition, and apoptosis. Gain of function alterations, through their overexpression, deletions, or point mutations in their kinase domains, have been implicated in various cancers. These receptors are targets of many small molecule inhibitors and monoclonal antibodies used in cancer therapy. Length = 279

>gnl|CDD|143346 cd07841, STKc_CDK7, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

 Score = 44.5 bits (106), Expect = 2e-05
 Identities = 36/166 (21%), Positives = 62/166 (37%), Gaps = 35/166 (21%)

Query: 105 NYAYDRMIGRGGYGTVFLG-SLSDNKAIAIKKSRIVYQSQIEQCINKVV-----VLSQIN 158
            Y   + +G G Y  V+        + +AIKK ++  + + +  IN        +L ++ 
Sbjct: 1   RYEKGKKLGEGTYAVVYKARDKETGRIVAIKKIKLGERKEAKDGINFTALREIKLLQELK 60

Query: 159 HRNVVGLLGCCLETEVPLLVNEFVKLPTISWEVRIR--IAAETAEDIKSI---------- 206
           H N++GLL          LV EF  + T   E  I+      T  DIKS           
Sbjct: 61  HPNIIGLLDVFGHKSNINLVFEF--MET-DLEKVIKDKSIVLTPADIKSYMLMTLRGLEY 117

Query: 207 --------------NILLDDNYTTKVCDFGASKLVPIDETQLSTMV 238
                         N+L+  +   K+ DFG ++       +++  V
Sbjct: 118 LHSNWILHRDLKPNNLLIASDGVLKLADFGLARSFGSPNRKMTHQV 163

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is also a component of the general transcription factor TFIIH, which phosphorylates the C-terminal domain (CTD) of RNA polymerase II when it is bound with unphosphorylated DNA, as present in the pre-initiation complex. Following phosphorylation, the CTD dissociates from the DNA which allows transcription initiation. Length = 298

>gnl|CDD|173671 cd05580, STKc_PKA, Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase

 Score = 44.1 bits (105), Expect = 3e-05
 Identities = 39/154 (25%), Positives = 65/154 (42%), Gaps = 31/154 (20%)

Query: 104 NNYAYDRMIGRGGYGTVFLGSLSDNKAI-AIK---KSRIVYQSQIEQCINKVVVLSQINH 159
           +++ + + +G G +G V L     +    A+K   K++IV   Q+E  +N+  +L  I H
Sbjct: 1   DDFEFIKTLGTGSFGRVMLVRHKGSGKYYALKILSKAKIVKLKQVEHVLNEKRILQSIRH 60

Query: 160 RNVVGLLGCCLETEVPLLVNEFV---KLPTISWEVRIR---------IAAETA------- 200
             +V L G   +     LV E+V   +L   S   +            AA+         
Sbjct: 61  PFLVNLYGSFQDDSNLYLVMEYVPGGEL--FSHLRKSGRFPEPVARFYAAQVVLALEYLH 118

Query: 201 ------EDIKSINILLDDNYTTKVCDFGASKLVP 228
                  D+K  N+LLD +   K+ DFG +K V 
Sbjct: 119 SLDIVYRDLKPENLLLDSDGYIKITDFGFAKRVK 152

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubiquitously in cells and interacts with many different downstream targets. It plays a role in the regulation of diverse processes such as growth, development, memory, metabolism, gene expression, immunity, and lipolysis. Length = 290

>gnl|CDD|173637 cd05059, PTKc_Tec_like, Catalytic domain of Tec-like Protein Tyrosine Kinases

 Score = 43.6 bits (103), Expect = 3e-05
 Identities = 34/146 (23%), Positives = 60/146 (41%), Gaps = 25/146 (17%)

Query: 110 RMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCC 169
           + +G G +G V LG       +AIK  R    S+ +  I +  V+ +++H N+V L G C
Sbjct: 10  KELGSGQFGVVHLGKWRGKIDVAIKMIREGAMSE-DDFIEEAKVMMKLSHPNLVQLYGVC 68

Query: 170 LETEVPLLVNEFVKLPTISWEVRIRIAAETAE------------------------DIKS 205
            +     +V E++    +   +R R      E                        D+ +
Sbjct: 69  TKQRPIFIVTEYMANGCLLNYLRERKGKLGTEWLLDMCSDVCEAMEYLESNGFIHRDLAA 128

Query: 206 INILLDDNYTTKVCDFGASKLVPIDE 231
            N L+ ++   KV DFG ++ V  D+
Sbjct: 129 RNCLVGEDNVVKVSDFGLARYVLDDQ 154

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, some members contain the Tec homology (TH) domain, which contains proline-rich and zinc-binding regions. Tec kinases form the second largest subfamily of nRTKs and are expressed mainly by haematopoietic cells, although Tec and Bmx are also found in endothelial cells. B-cells express Btk and Tec, while T-cells express Itk, Txk, and Tec. Collectively, Tec kinases are expressed in a variety of myeloid cells such as mast cells, platelets, macrophages, and dendritic cells. Each Tec kinase shows a distinct cell-type pattern of expression. The function of Tec kinases in lymphoid cells have been studied extensively. They play important roles in the development, differentiation, maturation, regulation, survival, and function of B-cells and T-cells. Mutations in Btk cause the severe B-cell immunodeficiency, X-linked agammaglobulinaemia (XLA). Length = 256

>gnl|CDD|173760 cd08220, STKc_Nek8, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8

 Score = 43.7 bits (103), Expect = 4e-05
 Identities = 44/169 (26%), Positives = 78/169 (46%), Gaps = 31/169 (18%)

Query: 105 NYAYDRMIGRGGYGTVFL-GSLSDNKAIAIKKSRIVYQSQIEQ--CINKVVVLSQINHRN 161
            Y   R++GRG +G V L    +D K + IK+  +   ++ E+    N+  VL  ++H N
Sbjct: 1   KYEKIRVVGRGAFGIVHLCRRKADQKLVIIKQIPVEQMTKDERLAAQNECQVLKLLSHPN 60

Query: 162 VVGLLGCCLETEVPLLVNEFVKLPTIS------------------WEVRIRIAAETA--- 200
           ++      LE +  ++V E+    T++                  + V+I +A       
Sbjct: 61  IIEYYENFLEDKALMIVMEYAPGGTLAEYIQKRCNSLLDEDTILHFFVQILLALHHVHTK 120

Query: 201 ----EDIKSINILLDDNYTT-KVCDFGASKLVPIDETQLSTMVQGTLGY 244
                D+K+ NILLD +    K+ DFG SK++   +++  T+V GT  Y
Sbjct: 121 LILHRDLKTQNILLDKHKMVVKIGDFGISKIL-SSKSKAYTVV-GTPCY 167

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with a rare form of juvenile renal cystic disease, nephronophthisis type 9. It has been suggested that a defect in the ciliary localization of Nek8 contributes to the development of cysts manifested by these diseases. Length = 256

>gnl|CDD|132966 cd06635, STKc_TAO1, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1

 Score = 43.2 bits (101), Expect = 6e-05
 Identities = 43/146 (29%), Positives = 62/146 (42%), Gaps = 29/146 (19%)

Query: 110 RMIGRGGYGTVFLG-SLSDNKAIAIKKSRIVYQSQIEQ---CINKVVVLSQINHRNVVGL 165
           R IG G +G V+    +  N+ +AIKK     +   E+    I +V  L +I H N +  
Sbjct: 31  REIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEVKFLQRIKHPNSIEY 90

Query: 166 LGCCLETEVPLLVNEFVKLPTIS--WEV------RIRIAAET----------------AE 201
            GC L      LV E+  L + S   EV       + IAA T                  
Sbjct: 91  KGCYLREHTAWLVMEYC-LGSASDLLEVHKKPLQEVEIAAITHGALQGLAYLHSHNMIHR 149

Query: 202 DIKSINILLDDNYTTKVCDFGASKLV 227
           DIK+ NILL +    K+ DFG++ + 
Sbjct: 150 DIKAGNILLTEPGQVKLADFGSASIA 175

Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuronal apoptosis. TAO1 interacts with the checkpoint proteins BubR1 and Mad2, and plays an important role in regulating mitotic progression, which is required for both chromosome congression and checkpoint-induced anaphase delay. TAO1 may play a role in protecting genomic stability. Length = 317

>gnl|CDD|173654 cd05108, PTKc_EGFR, Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor

 Score = 43.4 bits (102), Expect = 6e-05
 Identities = 36/154 (23%), Positives = 72/154 (46%), Gaps = 29/154 (18%)

Query: 109 DRMIGRGGYGTVFLGS-LSDNKAI----AIKKSRIVYQSQIEQCI-NKVVVLSQINHRNV 162
            +++G G +GTV+ G  + + + +    AIK+ R     +  + I ++  V++ +++ +V
Sbjct: 12  IKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHV 71

Query: 163 VGLLGCCLETEVPLLVN--------EFVKLPT--------ISWEVRIRIAAETAE----- 201
             LLG CL + V L+          ++V+           ++W V+I       E     
Sbjct: 72  CRLLGICLTSTVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEERRLV 131

Query: 202 --DIKSINILLDDNYTTKVCDFGASKLVPIDETQ 233
             D+ + N+L+      K+ DFG +KL+  DE +
Sbjct: 132 HRDLAARNVLVKTPQHVKITDFGLAKLLGADEKE 165

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. Ligands for EGFR include EGF, heparin binding EGF-like growth factor (HBEGF), epiregulin, amphiregulin, TGFalpha, and betacellulin. Upon ligand binding, EGFR can form homo- or heterodimers with other EGFR subfamily members. The EGFR signaling pathway is one of the most important pathways regulating cell proliferation, differentiation, survival, and growth. Overexpression and mutation in the kinase domain of EGFR have been implicated in the development and progression of a variety of cancers. A number of monoclonal antibodies and small molecule inhibitors have been developed that target EGFR, including the antibodies Cetuximab and Panitumumab, which are used in combination with other therapies for the treatment of colorectal cancer and non-small cell lung carcinoma (NSCLC). The small molecule inhibitors Gefitinib (Iressa) and Erlotinib (Tarceva), already used for NSCLC, are undergoing clinical trials for other types of cancer including gastrointestinal, breast, head and neck, and bladder. Length = 316

>gnl|CDD|173732 cd06628, STKc_MAPKKK_Byr2_like, Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases

 Score = 42.9 bits (101), Expect = 6e-05
 Identities = 40/153 (26%), Positives = 68/153 (44%), Gaps = 39/153 (25%)

Query: 111 MIGRGGYGTVFLG-SLSDNKAIAIK---------KSRIVYQSQIEQCINKVVVLSQINHR 160
           +IG G +G+V+LG + S  + +A+K          S+   +S ++    ++ +L ++ H 
Sbjct: 7   LIGSGSFGSVYLGMNASSGELMAVKQVELPSVSASSKDRKRSMLDALAREIALLKELQHE 66

Query: 161 NVVGLLGCCLETE--------VP----------------LLVNEFVK--LPTISWEVRIR 194
           N+V  LG  L+ +        VP                 LV  FV+  L  +++     
Sbjct: 67  NIVQYLGSSLDADHLNIFLEYVPGGSVAALLNNYGAFEETLVRNFVRQILKGLNYLHNRG 126

Query: 195 IAAETAEDIKSINILLDDNYTTKVCDFGASKLV 227
           I      DIK  NIL+D+    K+ DFG SK +
Sbjct: 127 I---IHRDIKGANILVDNKGGIKISDFGISKKL 156

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast Byr2 is regulated by Ras1. It responds to pheromone signaling and controls mating through the MAPK pathway. Budding yeast Ste11 functions in MAPK cascades that regulate mating, high osmolarity glycerol, and filamentous growth responses. Length = 267

>gnl|CDD|132991 cd06917, STKc_NAK1_like, Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases

 Score = 42.8 bits (101), Expect = 6e-05
 Identities = 39/158 (24%), Positives = 66/158 (41%), Gaps = 28/158 (17%)

Query: 111 MIGRGGYGTVFLG-SLSDNKAIAIKKSRIVYQS-QIEQCINKVVVLSQINH---RNVVGL 165
           +IGRG YG V+ G  +   + +A+K   +      +     +V +LSQ+      N+   
Sbjct: 8   LIGRGAYGAVYRGKHVPTGRVVALKIINLDTPDDDVSDIQREVALLSQLRQSQPPNITKY 67

Query: 166 LGCCLETEVPLLVNEF--------------VKLPTISWEVR--------IRIAAETAEDI 203
            G  L+     ++ E+              +    IS  +R        I        DI
Sbjct: 68  YGSYLKGPRLWIIMEYAEGGSVRTLMKAGPIAEKYISVIIREVLVALKYIHKVGVIHRDI 127

Query: 204 KSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGT 241
           K+ NIL+ +    K+CDFG + L+  + ++ ST V GT
Sbjct: 128 KAANILVTNTGNVKLCDFGVAALLNQNSSKRSTFV-GT 164

Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of centrin, and phosphorylates substrates in a Cdc31p-dependent manner. Length = 277

>gnl|CDD|173658 cd05114, PTKc_Tec_Rlk, Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase

 Score = 42.9 bits (101), Expect = 7e-05
 Identities = 34/149 (22%), Positives = 62/149 (41%), Gaps = 25/149 (16%)

Query: 107 AYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLL 166
            + + +G G +G V LG       +AIK       S+ E  I +  V+ +++H  +V L 
Sbjct: 7   TFMKELGSGQFGVVHLGKWRAQIKVAIKAINEGAMSE-EDFIEEAKVMMKLSHPKLVQLY 65

Query: 167 GCCLETEVPLLVNEFV-----------KLPTISWEVRIRIAAETAE-------------D 202
           G C + +   +V EF+           +   +S ++ + +  +  E             D
Sbjct: 66  GVCTQQKPLYIVTEFMENGCLLNYLRQRQGKLSKDMLLSMCQDVCEGMEYLERNSFIHRD 125

Query: 203 IKSINILLDDNYTTKVCDFGASKLVPIDE 231
           + + N L+      KV DFG ++ V  DE
Sbjct: 126 LAARNCLVSSTGVVKVSDFGMTRYVLDDE 154

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. Instead of PH, Rlk contains an N-terminal cysteine-rich region. In addition to PH, Tec also contains the Tec homology (TH) domain with proline-rich and zinc-binding regions. Tec kinases are expressed mainly by haematopoietic cells. Tec is more widely-expressed than other Tec subfamily kinases. It is found in endothelial cells, both B- and T-cells, and a variety of myeloid cells including mast cells, erythroid cells, platelets, macrophages and neutrophils. Rlk is expressed in T-cells and mast cell lines. Tec and Rlk are both key components of T-cell receptor (TCR) signaling. They are important in TCR-stimulated proliferation, IL-2 production and phopholipase C-gamma1 activation. Length = 256

>gnl|CDD|132964 cd06633, STKc_TAO3, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3

 Score = 43.1 bits (101), Expect = 7e-05
 Identities = 46/146 (31%), Positives = 64/146 (43%), Gaps = 30/146 (20%)

Query: 112 IGRGGYGTVFLGSLS-DNKAIAIKK---SRIVYQSQIEQCINKVVVLSQINHRNVVGLLG 167
           IG G +G V+  + S  N+ +A+KK   S      + +  I +V  L Q+ H N +   G
Sbjct: 29  IGHGSFGAVYFATNSHTNEVVAVKKMSYSGKQTNEKWQDIIKEVKFLQQLKHPNTIEYKG 88

Query: 168 CCLETEVPLLVNEFVKLPTIS--WEV------RIRIAAET----------------AEDI 203
           C L+     LV E+  L + S   EV       + IAA T                  DI
Sbjct: 89  CYLKEHTAWLVMEYC-LGSASDLLEVHKKPLQEVEIAAITHGALQGLAYLHSHNMIHRDI 147

Query: 204 KSINILLDDNYTTKVCDFG-ASKLVP 228
           K+ NILL +    K+ DFG ASK  P
Sbjct: 148 KAGNILLTEPGQVKLADFGSASKSSP 173

Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a component of the RAM (regulation of Ace2p activity and cellular morphogenesis) signaling pathway. TAO3 is upregulated in retinal ganglion cells after axotomy, and may play a role in apoptosis. Length = 313

>gnl|CDD|133248 cd05148, PTKc_Srm_Brk, Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

 Score = 42.8 bits (101), Expect = 7e-05
 Identities = 33/150 (22%), Positives = 64/150 (42%), Gaps = 31/150 (20%)

Query: 106 YAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGL 165
           +  +R +G G +G V+ G   +   +AIK  +     + +    +V  L ++ H++++ L
Sbjct: 8   FTLERKLGSGYFGEVWEGLWKNRVRVAIKILKSDDLLKQQDFQKEVQALKRLRHKHLISL 67

Query: 166 LGCCLETEVPLLVNEFVK---------------LPTISWEVRIRIAAETAE--------- 201
              C   E   ++ E ++               LP  S    I +A + AE         
Sbjct: 68  FAVCSVGEPVYIITELMEKGSLLAFLRSPEGQVLPVASL---IDMACQVAEGMAYLEEQN 124

Query: 202 ----DIKSINILLDDNYTTKVCDFGASKLV 227
               D+ + NIL+ ++   KV DFG ++L+
Sbjct: 125 SIHRDLAARNILVGEDLVCKVADFGLARLI 154

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Srm and Brk however, lack the N-terminal myristylation sites. Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Brk has been found to be overexpressed in a majority of breast tumors. Length = 261

>gnl|CDD|173661 cd05570, STKc_PKC, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C

 Score = 42.7 bits (101), Expect = 8e-05
 Identities = 37/149 (24%), Positives = 57/149 (38%), Gaps = 38/149 (25%)

Query: 110 RMIGRGGYGTVFLGSLSDNKAI----AIKKSRIVYQSQIEQCINKVVVLSQI-NHRNVVG 164
           +++G+G +G V L  L     +     +KK  I+    +E  + +  VL+    H  +  
Sbjct: 1   KVLGKGSFGKVLLAELKGTDELYAVKVLKKDVILQDDDVECTMTEKRVLALAGKHPFLTQ 60

Query: 165 LLGCCLETEVPL-LVNEFV-------------KLPTISWEVRIRI-AAETA--------- 200
           L   C +T+  L  V E+V             +      E R R  AAE           
Sbjct: 61  LH-SCFQTKDRLFFVMEYVNGGDLMFHIQRSGRFD----EPRARFYAAEIVLGLQFLHER 115

Query: 201 ----EDIKSINILLDDNYTTKVCDFGASK 225
                D+K  N+LLD     K+ DFG  K
Sbjct: 116 GIIYRDLKLDNVLLDSEGHIKIADFGMCK 144

Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only require PS. PKCs phosphorylate and modify the activities of a wide variety of cellular proteins including receptors, enzymes, cytoskeletal proteins, transcription factors, and other kinases. They play a central role in signal transduction pathways that regulate cell migration and polarity, proliferation, differentiation, and apoptosis. Also included in this subfamily are the PKC-like proteins, called PKNs. Length = 318

>gnl|CDD|133180 cd05049, PTKc_Trk, Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases

 Score = 42.4 bits (100), Expect = 9e-05
 Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 21/88 (23%)

Query: 110 RMIGRGGYGTVFLGSLS-----DNKAI-AIK--------KSRIVYQSQIEQCINKVVVLS 155
           R +G G +G VFLG        ++K + A+K         +R  ++ + E       +L+
Sbjct: 11  RELGEGAFGKVFLGECYHLEPENDKELVAVKTLKETASNDARKDFEREAE-------LLT 63

Query: 156 QINHRNVVGLLGCCLETEVPLLVNEFVK 183
              H N+V   G C E + P++V E+++
Sbjct: 64  NFQHENIVKFYGVCTEGDPPIMVFEYME 91

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalytic domain. Trk receptors are mainly expressed in the peripheral and central nervous systems. They play important roles in cell fate determination, neuronal survival and differentiation, as well as in the regulation of synaptic plasticity. Altered expression of Trk receptors is associated with many human diseases. Length = 280

>gnl|CDD|132965 cd06634, STKc_TAO2, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2

 Score = 42.3 bits (99), Expect = 1e-04
 Identities = 40/150 (26%), Positives = 66/150 (44%), Gaps = 29/150 (19%)

Query: 106 YAYDRMIGRGGYGTVFLG-SLSDNKAIAIKKSRIVYQSQIEQ---CINKVVVLSQINHRN 161
           ++  R IG G +G V+    + +++ +AIKK     +   E+    I +V  L ++ H N
Sbjct: 17  FSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPN 76

Query: 162 VVGLLGCCLETEVPLLVNEFVKLPTIS--WEV------RIRIAAET-------------- 199
            +   GC L      LV E+  L + S   EV       + IAA T              
Sbjct: 77  TIQYRGCYLREHTAWLVMEYC-LGSASDLLEVHKKPLQEVEIAAVTHGALQGLAYLHSHN 135

Query: 200 --AEDIKSINILLDDNYTTKVCDFGASKLV 227
               D+K+ NILL +    K+ DFG++ ++
Sbjct: 136 MIHRDVKAGNILLSEPGLVKLGDFGSASIM 165

Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. TAO2 contains a long C-terminal extension with autoinhibitory segments. It is activated by the release of this inhibition and the phosphorylation of its activation loop serine. TAO2 functions as a regulator of actin cytoskeletal and microtubule organization. In addition, it regulates the transforming growth factor-activated kinase 1 (TAK1), which is a MAPKKK that plays an essential role in the signaling pathways of tumor necrosis factor (TNF), interleukin 1 (IL-1), and Toll-like receptor (TLR). Length = 308

>gnl|CDD|173737 cd07834, STKc_MAPK, Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase

 Score = 42.5 bits (101), Expect = 1e-04
 Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 3/64 (4%)

Query: 106 YAYDRMIGRGGYGTVFLG-SLSDNKAIAIKKSRIVYQSQIE--QCINKVVVLSQINHRNV 162
           Y   + IG G YG V         + +AIKK   V+   I+  + + ++ +L  + H N+
Sbjct: 2   YELLKPIGSGAYGVVCSAVDKRTGRKVAIKKISNVFDDLIDAKRILREIKLLRHLRHENI 61

Query: 163 VGLL 166
           +GLL
Sbjct: 62  IGLL 65

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and activated by a MAPK kinase (MAP2K or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAP3K or MKKK). Each cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. There are three main typical MAPK subfamilies: Extracellular signal-Regulated Kinase (ERK), c-Jun N-terminal Kinase (JNK), and p38. Some MAPKs are atypical in that they are not regulated by MAP2Ks. These include MAPK4, MAPK6, NLK, and ERK7. Length = 330

>gnl|CDD|173674 cd05583, STKc_MSK_N, N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase

 Score = 42.5 bits (100), Expect = 1e-04
 Identities = 48/172 (27%), Positives = 72/172 (41%), Gaps = 32/172 (18%)

Query: 105 NYAYDRMIGRGGYGTVFL----GSLSDNKAIAIK---KSRIVYQSQ-IEQCINKVVVLSQ 156
           N+   R++G G YG VFL    G     K  A+K   K+ IV +++  E    +  VL  
Sbjct: 1   NFELLRVLGTGAYGKVFLVRKVGGHDAGKLYAMKVLKKATIVQKAKTAEHTRTERQVLEA 60

Query: 157 INHRNVVGLLGCCLETEVPL-LVNEFV---KLPTISW--------EVRIRIAAETA---- 200
           +     +  L    +T+  L L+ ++V   +L T  +        EVR+ IA        
Sbjct: 61  VRRCPFLVTLHYAFQTDTKLHLILDYVNGGELFTHLYQREHFTESEVRVYIAEIVLALDH 120

Query: 201 --------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTLGY 244
                    DIK  NILLD      + DFG SK    +E + +    GT+ Y
Sbjct: 121 LHQLGIIYRDIKLENILLDSEGHVVLTDFGLSKEFLAEEEERAYSFCGTIEY 172

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines. This triggers phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydrophobic motif (HM) in the C-terminal extension of NTD, which facilitates the phosphorylation of the A-loop and activates the NTD, which in turn phosphorylates downstream targets. MSKs are predominantly nuclear proteins. They are widely expressed in many tissues including heart, brain, lung, liver, kidney, and pancreas. There are two isoforms of MSK, called MSK1 and MSK2. Length = 288

>gnl|CDD|133240 cd05109, PTKc_HER2, Catalytic domain of the Protein Tyrosine Kinase, HER2

 Score = 41.9 bits (98), Expect = 1e-04
 Identities = 36/153 (23%), Positives = 69/153 (45%), Gaps = 29/153 (18%)

Query: 110 RMIGRGGYGTVFLGS-LSDNKAIAIKKSRIVYQSQIEQCINKVV-----VLSQINHRNVV 163
           +++G G +GTV+ G  + D + + I  +  V +       NK +     V++ +    V 
Sbjct: 13  KVLGSGAFGTVYKGIWIPDGENVKIPVAIKVLRENTSPKANKEILDEAYVMAGVGSPYVC 72

Query: 164 GLLGCCLETEVPLLVN--------EFVK--------LPTISWEVRIRIAAETAEDIKSI- 206
            LLG CL + V L+          ++V+           ++W V+I       E+++ + 
Sbjct: 73  RLLGICLTSTVQLVTQLMPYGCLLDYVRENKDRIGSQDLLNWCVQIAKGMSYLEEVRLVH 132

Query: 207 ------NILLDDNYTTKVCDFGASKLVPIDETQ 233
                 N+L+      K+ DFG ++L+ IDET+
Sbjct: 133 RDLAARNVLVKSPNHVKITDFGLARLLDIDETE 165

Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. HER2 does not bind to any known EGFR subfamily ligands, but contributes to the kinase activity of all possible heterodimers. It acts as the preferred partner with other ligand-bound EGFR proteins and functions as a signal amplifier, with the HER2-HER3 heterodimer being the most potent pair in mitogenic signaling. HER2 plays an important role in cell development, proliferation, survival and motility. Overexpression of HER2 results in its activation and downstream signaling, even in the absence of ligand. HER2 overexpression, mainly due to gene amplification, has been shown in a variety of human cancers. Its role in breast cancer is especially well-documented. HER2 is up-regulated in about 25% of breast tumors and is associated with increases in tumor aggressiveness, recurrence and mortality. HER2 is a target for monoclonal antibodies and small molecule inhibitors, which are being developed as treatments for cancer. The first humanized antibody approved for clinical use is Trastuzumab (Herceptin), which is being used in combination with other therapies to improve the survival rates of patients with HER2-overexpressing breast cancer. Length = 279

>gnl|CDD|132988 cd06657, STKc_PAK4, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4

 Score = 41.9 bits (98), Expect = 1e-04
 Identities = 44/144 (30%), Positives = 64/144 (44%), Gaps = 27/144 (18%)

Query: 112 IGRGGYGTVFLGSL-SDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCL 170
           IG G  G V + ++ S  K +A+KK  +  Q + E   N+VV++    H NVV +    L
Sbjct: 28  IGEGSTGIVCIATVKSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYL 87

Query: 171 ETEVPLLVNEFVK---LPTISWEVRI---RIAAETA----------------EDIKSINI 208
             +   +V EF++   L  I    R+   +IAA                    DIKS +I
Sbjct: 88  VGDELWVVMEFLEGGALTDIVTHTRMNEEQIAAVCLAVLKALSVLHAQGVIHRDIKSDSI 147

Query: 209 LLDDNYTTKVCDFG----ASKLVP 228
           LL  +   K+ DFG     SK VP
Sbjct: 148 LLTHDGRVKLSDFGFCAQVSKEVP 171

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell morphology and cytoskeletal organization. It is essential for embryonic viability and proper neural development. Mice lacking PAK4 die due to defects in the fetal heart. In addition, their spinal cord motor neurons showed failure to differentiate and migrate. PAK4 also plays a role in cell survival and tumorigenesis. It is overexpressed in many primary tumors including colon, esophageal, and mammary tumors. PAK4 has also been implicated in viral and bacterial infection pathways. Length = 292

>gnl|CDD|132985 cd06654, STKc_PAK1, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1

 Score = 42.0 bits (98), Expect = 1e-04
 Identities = 41/150 (27%), Positives = 73/150 (48%), Gaps = 23/150 (15%)

Query: 112 IGRGGYGTVFLG-SLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCL 170
           IG+G  GTV+    ++  + +AI++  +  Q + E  IN+++V+ +  + N+V  L   L
Sbjct: 28  IGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYL 87

Query: 171 ETEVPLLVNEFV---KLPTISWEVRI---RIAAETAE----------------DIKSINI 208
             +   +V E++    L  +  E  +   +IAA   E                DIKS NI
Sbjct: 88  VGDELWVVMEYLAGGSLTDVVTETCMDEGQIAAVCRECLQALEFLHSNQVIHRDIKSDNI 147

Query: 209 LLDDNYTTKVCDFGASKLVPIDETQLSTMV 238
           LL  + + K+ DFG    +  ++++ STMV
Sbjct: 148 LLGMDGSVKLTDFGFCAQITPEQSKRSTMV 177

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). PAK1 is important in the regulation of many cellular processes including cytoskeletal dynamics, cell motility, growth, and proliferation. Although PAK1 has been regarded mainly as a cytosolic protein, recent reports indicate that PAK1 also exists in significant amounts in the nucleus, where it is involved in transcription modulation and in cell cycle regulatory events. PAK1 is also involved in transformation and tumorigenesis. Its overexpression, hyperactivation and increased nuclear accumulation is correlated to breast cancer invasiveness and progression. Nuclear accumulation is also linked to tamoxifen resistance in breast cancer cells. Length = 296

>gnl|CDD|173690 cd05599, STKc_NDR_like, Catalytic domain of Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

 Score = 42.0 bits (99), Expect = 1e-04
 Identities = 38/144 (26%), Positives = 59/144 (40%), Gaps = 29/144 (20%)

Query: 110 RMIGRGGYGTVFLGSLSD-NKAIAIK---KSRIVYQSQIEQCINKVVVLSQINHRNVVGL 165
           ++IGRG +G V L    D     A+K   KS ++ + Q+     +  +L++ ++  VV L
Sbjct: 7   KVIGRGAFGEVRLVQKKDTGHIYAMKKLRKSEMLEKEQVAHVRAERDILAEADNPWVVKL 66

Query: 166 LGCCLETEVPL-LVNEFV----------KLPTISWEVRIRIAAETA-------------E 201
                + E  L L+ E++          K  T + E      AET               
Sbjct: 67  Y-YSFQDENYLYLIMEYLPGGDMMTLLMKKDTFTEEETRFYIAETILAIDSIHKLGYIHR 125

Query: 202 DIKSINILLDDNYTTKVCDFGASK 225
           DIK  N+LLD     K+ DFG   
Sbjct: 126 DIKPDNLLLDAKGHIKLSDFGLCT 149

Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related (NDR) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. NDR kinases regulate mitosis, cell growth, embryonic development, and neurological processes. They are also required for proper centrosome duplication. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. This subfamily also contains fungal NDR-like kinases. Length = 364

>gnl|CDD|173761 cd08221, STKc_Nek9, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9

 Score = 41.7 bits (98), Expect = 2e-04
 Identities = 39/171 (22%), Positives = 73/171 (42%), Gaps = 32/171 (18%)

Query: 105 NYAYDRMIGRGGYGTVFL-GSLSDNKAIAIKKSRIVYQSQIEQ--CINKVVVLSQINHRN 161
           +Y   R++G+G +G   L     D+  +  K+  +   S+ E+   +N++V+LS + H N
Sbjct: 1   HYIPIRVLGKGAFGEATLYRRTEDDSLVVWKEVNLTRLSEKERRDALNEIVILSLLQHPN 60

Query: 162 VVGLLGCCLETEVPLLVNEFVKLPT-----------------ISWEVRIRIAAETA---- 200
           ++      ++    L+  E+    T                 + W    +I +  +    
Sbjct: 61  IIAYYNHFMDDNTLLIEMEYANGGTLYDKIVRQKGQLFEEEMVLW-YLFQIVSAVSYIHK 119

Query: 201 -----EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTLGYYL 246
                 DIK++NI L      K+ DFG SK++   E  ++  V GT  YY+
Sbjct: 120 AGILHRDIKTLNIFLTKAGLIKLGDFGISKILG-SEYSMAETVVGTP-YYM 168

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associates with FACT (FAcilitates Chromatin Transcription) and modulates interphase progression. It also interacts with Nek6, and Nek7, during mitosis, resulting in their activation. Length = 256

>gnl|CDD|173743 cd07846, STKc_CDKL2_3, Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 38/141 (26%), Positives = 58/141 (41%), Gaps = 32/141 (22%)

Query: 111 MIGRGGYGTVFLGSLSD-NKAIAIKKSRIVYQSQIEQCINKVVV-----LSQINHRNVVG 164
           ++G G YG V      +  + +AIKK     +S+ ++ + K+ +     L Q+ H N+V 
Sbjct: 8   LVGEGSYGMVMKCKHKETGQIVAIKK---FLESEDDKMVKKIAMREIRMLKQLRHENLVN 64

Query: 165 LLGCCLETEVPLLVNEFV---------KLPTISWEVRIR--------------IAAETAE 201
           L+      +   LV EFV         K P    E R+R                     
Sbjct: 65  LIEVFRRKKRLYLVFEFVDHTVLDDLEKYPNGLDESRVRKYLFQILRGIEFCHSHNIIHR 124

Query: 202 DIKSINILLDDNYTTKVCDFG 222
           DIK  NIL+  +   K+CDFG
Sbjct: 125 DIKPENILVSQSGVVKLCDFG 145

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKIAMRE (NKIATRE in rat), by translocation is associated with mild mental retardation. It has been reported that CDKL3 is lost in leukemic cells having a chromosome arm 5q deletion, and may contribute to the transformed phenotype. Length = 286

>gnl|CDD|173752 cd07861, STKc_CDK1_euk, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 33/141 (23%), Positives = 60/141 (42%), Gaps = 32/141 (22%)

Query: 112 IGRGGYGTVFLG-SLSDNKAIAIKKSRIVYQSQIE----QCINKVVVLSQINHRNVVGLL 166
           IG G YG V+ G +    + +A+KK R+  +S+ E      I ++ +L ++ H N+V L 
Sbjct: 8   IGEGTYGVVYKGRNKKTGQIVAMKKIRL--ESEEEGVPSTAIREISLLKELQHPNIVCLQ 65

Query: 167 GCCLETEVPLLVNEFV---------KLPTISWEVRIRIAAETAE---------------- 201
              ++     L+ EF+          LP   +     + +   +                
Sbjct: 66  DVLMQESRLYLIFEFLSMDLKKYLDSLPKGQYMDAELVKSYLYQILQGILFCHSRRVLHR 125

Query: 202 DIKSINILLDDNYTTKVCDFG 222
           D+K  N+L+D+    K+ DFG
Sbjct: 126 DLKPQNLLIDNKGVIKLADFG 146

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2 phase entry and progression. CDK1/cyclin A2 has also been implicated as an important regulator of S phase events. The CDK1/cyclin B complex is critical for G2 to M phase transition. It induces mitosis by activating nuclear enzymes that regulate chromatin condensation, nuclear membrane degradation, mitosis-specific microtubule and cytoskeletal reorganization. CDK1 also associates with cyclin E and plays a role in the entry into S phase. CDK1 transcription is stable throughout the cell cycle but is modulated in some pathological conditions. It may play a role in regulating apoptosis under these conditions. In breast cancer cells, HER2 can mediate apoptosis by inactivating CDK1. Activation of CDK1 may contribute to HIV-1 induced apoptosis and neuronal apoptosis in neurodegenerative diseases. Length = 285

>gnl|CDD|173765 cd08225, STKc_Nek5, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5

 Score = 41.5 bits (97), Expect = 2e-04
 Identities = 43/171 (25%), Positives = 72/171 (42%), Gaps = 31/171 (18%)

Query: 105 NYAYDRMIGRGGYGTVFLG-SLSDNKAIAIKKSRIVYQ--SQIEQCINKVVVLSQINHRN 161
            Y   + IG G +G ++L  + SD++   IK+  +      + E    +V++L+++ H N
Sbjct: 1   RYEIIKKIGEGSFGKIYLAKAKSDSEHCVIKEIDLTKMPVKEKEASKKEVILLAKMKHPN 60

Query: 162 VVGLLGCCLETEVPLLVNE------------------FVKLPTISWEVRIRIAAE----- 198
           +V       E     +V E                  F +   +SW V+I +  +     
Sbjct: 61  IVTFFASFQENGRLFIVMEYCDGGDLMKRINRQRGVLFSEDQILSWFVQISLGLKHIHDR 120

Query: 199 --TAEDIKSINILLDDN-YTTKVCDFGASKLVPIDETQLSTMVQGTLGYYL 246
                DIKS NI L  N    K+ DFG ++ +  D  +L+    GT  YYL
Sbjct: 121 KILHRDIKSQNIFLSKNGMVAKLGDFGIARQLN-DSMELAYTCVGT-PYYL 169

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown. Length = 257

>gnl|CDD|133201 cd05070, PTKc_Fyn_Yrk, Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk

 Score = 41.5 bits (97), Expect = 2e-04
 Identities = 35/158 (22%), Positives = 71/158 (44%), Gaps = 29/158 (18%)

Query: 100 KIATNNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINH 159
           +I   +    + +G G +G V++G+ + N  +A+K  +    S  E  + +  ++ ++ H
Sbjct: 2   EIPRESLQLIKKLGNGQFGEVWMGTWNGNTKVAVKTLKPGTMSP-ESFLEEAQIMKKLRH 60

Query: 160 RNVVGLLGCCLETEVPLLVNEF-----------------VKLPTISWEVRIRIAAETA-- 200
             +V L     E  +  +V E+                 +KLP +  ++  ++AA  A  
Sbjct: 61  DKLVQLYAVVSEEPI-YIVTEYMSKGSLLDFLKDGEGRALKLPNLV-DMAAQVAAGMAYI 118

Query: 201 -------EDIKSINILLDDNYTTKVCDFGASKLVPIDE 231
                   D++S NIL+ D    K+ DFG ++L+  +E
Sbjct: 119 ERMNYIHRDLRSANILVGDGLVCKIADFGLARLIEDNE 156

Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Fyn, together with Lck, plays a critical role in T-cell signal transduction by phosphorylating ITAM (immunoreceptor tyr activation motif) sequences on T-cell receptors, ultimately leading to the proliferation and differentiation of T-cells. In addition, Fyn is involved in the myelination of neurons, and is implicated in Alzheimer's and Parkinson's diseases. Yrk has been detected only in chickens. It is primarily found in neuronal and epithelial cells and in macrophages. It may play a role in inflammation and in response to injury. Length = 260

>gnl|CDD|173736 cd07832, STKc_CCRK, Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

 Score = 41.1 bits (97), Expect = 3e-04
 Identities = 39/170 (22%), Positives = 61/170 (35%), Gaps = 34/170 (20%)

Query: 105 NYAYDRMIGRGGYGTVFL-GSLSDNKAIAIKKSRIVYQSQIEQCINKVV-----VLSQIN 158
            Y     IG G +G VF        + +A+KK   V   ++E  I          L    
Sbjct: 1   RYKILGRIGEGAHGIVFKAKDRETGETVALKK---VALRRLEGGIPNQALREIKALQACQ 57

Query: 159 HRNVVGLLGCCLETEVPLLVNEFVKLPTISWEVRIR-------------------IAAET 199
           H  VV LL         +LV E++    +S  +R                     +A   
Sbjct: 58  HPYVVKLLDVFPHGSGFVLVMEYM-PSDLSEVLRDEERPLPEAQVKSYMRMLLKGVAYMH 116

Query: 200 AE-----DIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTLGY 244
           A      D+K  N+L+  +   K+ DFG ++L   +E +L +    T  Y
Sbjct: 117 ANGIMHRDLKPANLLISADGVLKIADFGLARLFSEEEPRLYSHQVATRWY 166

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of heart failure. Length = 286

>gnl|CDD|133200 cd05069, PTKc_Yes, Catalytic domain of the Protein Tyrosine Kinase, Yes

 Score = 40.8 bits (95), Expect = 3e-04
 Identities = 35/153 (22%), Positives = 68/153 (44%), Gaps = 37/153 (24%)

Query: 109 DRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGC 168
           D  +G+G +G V++G+ +    +AIK  +       E  + +  ++ ++ H  +V L   
Sbjct: 11  DVKLGQGCFGEVWMGTWNGTTKVAIKTLKPGTMMP-EAFLQEAQIMKKLRHDKLVPLYAV 69

Query: 169 CLETEVPLLVNEF-----------------VKLPTISWEVRIRIAAETAE---------- 201
             E  +  +V EF                 +KLP +     + +AA+ A+          
Sbjct: 70  VSEEPI-YIVTEFMGKGSLLDFLKEGDGKYLKLPQL-----VDMAAQIADGMAYIERMNY 123

Query: 202 ---DIKSINILLDDNYTTKVCDFGASKLVPIDE 231
              D+++ NIL+ DN   K+ DFG ++L+  +E
Sbjct: 124 IHRDLRAANILVGDNLVCKIADFGLARLIEDNE 156

Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. c-Yes kinase is the cellular homolog of the oncogenic protein (v-Yes) encoded by the Yamaguchi 73 and Esh sarcoma viruses. It displays functional overlap with other Src subfamily members, particularly Src. It also shows some unique functions such as binding to occludins, transmembrane proteins that regulate extracellular interactions in tight junctions. Yes also associates with a number of proteins in different cell types that Src does not interact with, like JAK2 and gp130 in pre-adipocytes, and Pyk2 in treated pulmonary vein endothelial cells. Although the biological function of Yes remains unclear, it appears to have a role in regulating cell-cell interactions and vesicle trafficking in polarized cells. Length = 260

>gnl|CDD|133228 cd05097, PTKc_DDR_like, Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases

 Score = 41.1 bits (96), Expect = 3e-04
 Identities = 21/113 (18%), Positives = 51/113 (45%), Gaps = 35/113 (30%)

Query: 148 INKVVVLSQINHRNVVGLLGCCLETEVPLLVNEFVK----------------------LP 185
           + ++ ++S++ + N++ LLG C+  +   ++ E+++                      +P
Sbjct: 65  LKEIKIMSRLKNPNIIRLLGVCVSDDPLCMITEYMENGDLNQFLSQREIESTFTHANNIP 124

Query: 186 TISWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASK 225
           ++S    + +A + A              D+ + N L+ ++YT K+ DFG S+
Sbjct: 125 SVSIANLLYMAVQIASGMKYLASLNFVHRDLATRNCLVGNHYTIKIADFGMSR 177

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including breast, colon, ovarian, brain, and lung. There is no evidence showing that DDRs act as transforming oncogenes. They are more likely to play a role in the regulation of tumor growth and metastasis. Length = 295

>gnl|CDD|133194 cd05063, PTKc_EphR_A2, Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2

 Score = 40.7 bits (95), Expect = 3e-04
 Identities = 37/160 (23%), Positives = 72/160 (45%), Gaps = 29/160 (18%)

Query: 100 KIATNNYAYDRMIGRGGYGTVFLGSLS----DNKAIAIKKSRIVY-QSQIEQCINKVVVL 154
           +I  ++    ++IG G +G VF G L        A+AIK  +  Y + Q +  +++  ++
Sbjct: 1   EIHPSHITKQKVIGAGEFGEVFRGILKMPGRKEVAVAIKTLKPGYTEKQRQDFLSEASIM 60

Query: 155 SQINHRNVVGLLGCCLETEVPLLVNEFVKLPTISWEVRIR---------------IAAET 199
            Q +H N++ L G   + +  +++ E+++   +   +R                 IAA  
Sbjct: 61  GQFSHHNIIRLEGVVTKFKPAMIITEYMENGALDKYLRDHDGEFSSYQLVGMLRGIAAGM 120

Query: 200 A---------EDIKSINILLDDNYTTKVCDFGASKLVPID 230
                      D+ + NIL++ N   KV DFG S+++  D
Sbjct: 121 KYLSDMNYVHRDLAARNILVNSNLECKVSDFGLSRVLEDD 160

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion, making it important in neural development and plasticity, cell morphogenesis, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. The EphA2 receptor is overexpressed in tumor cells and tumor blood vessels in a variety of cancers including breast, prostate, lung, and colon. As a result, it is an attractive target for drug design since its inhibition could affect several aspects of tumor progression. Length = 268

>gnl|CDD|173630 cd05044, PTKc_c-ros, Catalytic domain of the Protein Tyrosine Kinase, C-ros

 Score = 40.6 bits (95), Expect = 4e-04
 Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 10/80 (12%)

Query: 110 RMIGRGGYGTVFLGSLSDNKA-------IAIKKSR--IVYQSQIEQCINKVVVLSQINHR 160
             +G G +G V+ G+ +D          +A+K  R     Q + E  + +  ++S  NH 
Sbjct: 1   NFLGSGAFGEVYEGTATDILGPGSGPIRVAVKTLRKGATDQEKKE-FLKEAHLMSNFNHP 59

Query: 161 NVVGLLGCCLETEVPLLVNE 180
           N+V LLG CL  E   ++ E
Sbjct: 60  NIVKLLGVCLLNEPQYIIME 79

Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male mice bearing inactive mutations of c-ros lack the initial segment of the epididymis and are infertile. The Drosophila protein, Sevenless, is required for the specification of the R7 photoreceptor cell during eye development. Length = 269

>gnl|CDD|173768 cd08228, STKc_Nek6, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6

 Score = 40.4 bits (94), Expect = 4e-04
 Identities = 23/71 (32%), Positives = 42/71 (59%), Gaps = 4/71 (5%)

Query: 105 NYAYDRMIGRGGYGTVFLGS-LSDNKAIAIKKSRI--VYQSQIEQ-CINKVVVLSQINHR 160
           N+  ++ IGRG +  V+  + L D K +A+KK +I  +  ++  Q C+ ++ +L Q+NH 
Sbjct: 3   NFQIEKKIGRGQFSEVYRATCLLDRKPVALKKVQIFEMMDAKARQDCVKEIDLLKQLNHP 62

Query: 161 NVVGLLGCCLE 171
           NV+  L   +E
Sbjct: 63  NVIKYLDSFIE 73

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase and anaphase, and to the midbody during cytokinesis. Length = 267

>gnl|CDD|173725 cd06608, STKc_myosinIII_like, Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases

 Score = 40.3 bits (95), Expect = 4e-04
 Identities = 40/162 (24%), Positives = 51/162 (31%), Gaps = 38/162 (23%)

Query: 99  LKIATNNYAYDRMIGRGGYGTVFLGSLSDNK---AIAIKKSRIVYQSQIEQCINKVVVLS 155
           L   T  +    +IG G YG V+           AI I       + +I++  N +   S
Sbjct: 1   LPDPTGIFELVEVIGEGTYGKVYKARHKKTGQLVAIKIMDIIEDEEEEIKEEYNILRKYS 60

Query: 156 QINHRNVVGLLGC-------------------CLETEVPLLVNEFVKLP-TISWEVRIRI 195
             NH N+    G                    C    V  LV    K    +  E    I
Sbjct: 61  --NHPNIATFYGAFIKKNPPGNDDQLWLVMELCGGGSVTDLVKGLRKKGKRLKEEWIAYI 118

Query: 196 AAETAE-------------DIKSINILLDDNYTTKVCDFGAS 224
             ET               DIK  NILL  N   K+ DFG S
Sbjct: 119 LRETLRGLAYLHENKVIHRDIKGQNILLTKNAEVKLVDFGVS 160

Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin III may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. It may also function as a cargo carrier during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. The Drosophila class III myosin, called NinaC (Neither inactivation nor afterpotential protein C), is critical in normal adaptation and termination of photoresponse. Vertebrates contain two isoforms of class III myosin, IIIA and IIIB. This subfamily also includes mammalian NIK-like embryo-specific kinase (NESK), Traf2- and Nck-interacting kinase (TNIK), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6). MAP4Ks are involved in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Length = 275

>gnl|CDD|133202 cd05071, PTKc_Src, Catalytic domain of the Protein Tyrosine Kinase, Src

 Score = 40.0 bits (93), Expect = 5e-04
 Identities = 34/146 (23%), Positives = 68/146 (46%), Gaps = 29/146 (19%)

Query: 112 IGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLE 171
           +G+G +G V++G+ +    +AIK  +    S  E  + +  V+ ++ H  +V L     E
Sbjct: 14  LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSP-EAFLQEAQVMKKLRHEKLVQLYAVVSE 72

Query: 172 TEVPLLVNEF-----------------VKLPTISWEVRIRIAAETA---------EDIKS 205
             +  +V E+                 ++LP +  ++  +IA+  A          D+++
Sbjct: 73  EPI-YIVTEYMSKGSLLDFLKGEMGKYLRLPQLV-DMAAQIASGMAYVERMNYVHRDLRA 130

Query: 206 INILLDDNYTTKVCDFGASKLVPIDE 231
            NIL+ +N   KV DFG ++L+  +E
Sbjct: 131 ANILVGENLVCKVADFGLARLIEDNE 156

Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Src also play a role in regulating cell adhesion, invasion, and motility in cancer cells and tumor vasculature, contributing to cancer progression and metastasis. Elevated levels of Src kinase activity have been reported in a variety of human cancers. Several inhibitors of Src have been developed as anti-cancer drugs. Src is also implicated in acute inflammatory responses and osteoclast function. Length = 262

>gnl|CDD|133213 cd05082, PTKc_Csk, Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase

 Score = 40.0 bits (93), Expect = 6e-04
 Identities = 34/142 (23%), Positives = 65/142 (45%), Gaps = 29/142 (20%)

Query: 110 RMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCC 169
           + IG+G +G V LG    NK +A+K   I   +  +  + +  V++Q+ H N+V LLG  
Sbjct: 12  QTIGKGEFGDVMLGDYRGNK-VAVKC--IKNDATAQAFLAEASVMTQLRHSNLVQLLGVI 68

Query: 170 LETEVPL-LVNEFVK------------LPTISWEVRIRIAAETAE-------------DI 203
           +E +  L +V E++                +  +  ++ + +  E             D+
Sbjct: 69  VEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEANNFVHRDL 128

Query: 204 KSINILLDDNYTTKVCDFGASK 225
            + N+L+ ++   KV DFG +K
Sbjct: 129 AARNVLVSEDNVAKVSDFGLTK 150

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, resulting in their inactivation. Csk is expressed in a wide variety of tissues. As a negative regulator of Src, Csk plays a role in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. In addition, Csk also shows Src-independent functions. It is a critical component in G-protein signaling, and plays a role in cytoskeletal reorganization and cell migration. Length = 256

>gnl|CDD|133211 cd05080, PTKc_Tyk2_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

 Score = 39.9 bits (93), Expect = 6e-04
 Identities = 36/149 (24%), Positives = 62/149 (41%), Gaps = 30/149 (20%)

Query: 110 RMIGRGGYGTVFLGSLSDN-----KAIAIKK-SRIVYQSQIEQCINKVVVLSQINHRNVV 163
           R++G G +G V L           + +A+K   R   Q        ++ +L  + H N+V
Sbjct: 10  RVLGEGHFGKVSLYCYDPANDGTGEMVAVKTLKRECGQQNTSGWKKEINILKTLYHENIV 69

Query: 164 GLLGCCLET--EVPLLVNEFVKLPT---------ISWEVRIRIAAETAE----------- 201
              GCC E   +   L+ E+V L +         ++    +  A +  E           
Sbjct: 70  KYKGCCSEQGGKGLQLIMEYVPLGSLRDYLPKHKLNLAQLLLFAQQICEGMAYLHSQHYI 129

Query: 202 --DIKSINILLDDNYTTKVCDFGASKLVP 228
             D+ + N+LLD++   K+ DFG +K VP
Sbjct: 130 HRDLAARNVLLDNDRLVKIGDFGLAKAVP 158

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Tyk2 is widely expressed in many tissues. It is involved in signaling via the cytokine receptors IFN-alphabeta, IL-6, IL-10, IL-12, IL-13, and IL-23. It mediates cell surface urokinase receptor (uPAR) signaling and plays a role in modulating vascular smooth muscle cell (VSMC) functional behavior in response to injury. Tyk2 is also important in dendritic cell function and T helper (Th)1 cell differentiation. A homozygous mutation of Tyk2 was found in a patient with hyper-IgE syndrome (HIES), a primary immunodeficiency characterized by recurrent skin abscesses, pneumonia, and elevated serum IgE. This suggests that Tyk2 may play important roles in multiple cytokine signaling involved in innate and adaptive immunity. Length = 283

>gnl|CDD|173633 cd05052, PTKc_Abl, Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

 Score = 39.8 bits (93), Expect = 7e-04
 Identities = 36/149 (24%), Positives = 67/149 (44%), Gaps = 35/149 (23%)

Query: 112 IGRGGYGTVFLGSLSD-NKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCL 170
           +G G YG V+ G     +  +A+K  +     ++E+ + +  V+ +I H N+V LLG C 
Sbjct: 14  LGGGQYGEVYEGVWKKYSLTVAVKTLK-EDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCT 72

Query: 171 ETEVPL-LVNEFV---------------KLPTISWEVRIRIAAETA-------------E 201
             E P  ++ EF+               ++  +   V + +A + +              
Sbjct: 73  R-EPPFYIITEFMTYGNLLDYLRECNRQEVNAV---VLLYMATQISSAMEYLEKKNFIHR 128

Query: 202 DIKSINILLDDNYTTKVCDFGASKLVPID 230
           D+ + N L+ +N+  KV DFG S+L+  D
Sbjct: 129 DLAARNCLVGENHLVKVADFGLSRLMTGD 157

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays a role in cell proliferation and survival. In response to DNA damage or oxidative stress, Abl is transported to the nucleus where it induces apoptosis. In chronic myelogenous leukemia (CML) patients, an aberrant translocation results in the replacement of the first exon of Abl with the BCR (breakpoint cluster region) gene. The resulting BCR-Abl fusion protein is constitutively active and associates into tetramers, resulting in a hyperactive kinase sending a continuous signal. This leads to uncontrolled proliferation, morphological transformation and anti-apoptotic effects. BCR-Abl is the target of selective inhibitors, such as imatinib (Gleevec), used in the treatment of CML. Abl2, also known as ARG (Abelson-related gene), is thought to play a cooperative role with Abl in the proper development of the nervous system. The Tel-ARG fusion protein, resulting from reciprocal translocation between chromosomes 1 and 12, is associated with acute myeloid leukemia (AML). The TEL gene is a frequent fusion partner of other tyr kinase oncogenes, including Tel/Abl, Tel/PDGFRbeta, and Tel/Jak2, found in patients with leukemia and myeloproliferative disorders. Length = 263

>gnl|CDD|173744 cd07847, STKc_CDKL1_4, Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4

 Score = 39.7 bits (93), Expect = 9e-04
 Identities = 42/155 (27%), Positives = 66/155 (42%), Gaps = 42/155 (27%)

Query: 108 YDRM--IGRGGYGTVFLGSLSDNKAI-AIKKSRIVYQSQIEQCINKVVV-----LSQINH 159
           Y+++  IG G YG VF     +   I AIKK     +S+ +  I K+ +     L Q+ H
Sbjct: 3   YEKLSKIGEGSYGVVFKCRNRETGQIVAIKK---FVESEDDPVIKKIALREIRMLKQLKH 59

Query: 160 RNVVGLLGC-------------CLETEVPLLVNEFVKLPTISWEVRIR-IAAETAE---- 201
            N+V L+               C  T    ++NE  K P    E  I+ I  +T +    
Sbjct: 60  PNLVNLIEVFRRKRKLHLVFEYCDHT----VLNELEKNPRGVPEHLIKKIIWQTLQAVNF 115

Query: 202 ---------DIKSINILLDDNYTTKVCDFGASKLV 227
                    D+K  NIL+      K+CDFG ++++
Sbjct: 116 CHKHNCIHRDVKPENILITKQGQIKLCDFGFARIL 150

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The function of CDKL4 is unknown. Length = 286

>gnl|CDD|132960 cd06629, STKc_MAPKKK_Bck1_like, Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases

 Score = 39.4 bits (92), Expect = 0.001
 Identities = 33/149 (22%), Positives = 61/149 (40%), Gaps = 34/149 (22%)

Query: 111 MIGRGGYGTVFLGSLSDN-KAIAIKKSRI----------VYQSQIEQCINKVVVLSQINH 159
           +IG+G YG V+L       + +A+K+  +            +  ++   +++  L  ++H
Sbjct: 8   LIGKGTYGRVYLALNVTTGEMMAVKQVELPATIAGRHDSRQKDMVKALRSEIETLKDLDH 67

Query: 160 RNVVGLLGCCLETEVPLLVNEFVKLPTISWEVR---------IRIAAETA---------- 200
            N+V  LG     E   +  E+V   +I   +R         +R   E            
Sbjct: 68  LNIVQYLGFETTEEYLSIFLEYVPGGSIGSCLRTYGRFEEQLVRFFTEQVLEGLAYLHSK 127

Query: 201 ----EDIKSINILLDDNYTTKVCDFGASK 225
                D+K+ N+L+D +   K+ DFG SK
Sbjct: 128 GILHRDLKADNLLVDADGICKISDFGISK 156

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell integrity MAPK pathway, which is activated by stresses and aggressions to the cell wall. The MAPKKK Bck1, MAPKKs Mkk1 and Mkk2, and the MAPK Slt2 make up the cascade that is important in the maintenance of cell wall homeostasis. Fission yeast Mkh1 is involved in MAPK cascades regulating cell morphology, cell wall integrity, salt resistance, and filamentous growth in response to stress. Length = 272

>gnl|CDD|132989 cd06658, STKc_PAK5, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5

 Score = 39.3 bits (91), Expect = 0.001
 Identities = 42/144 (29%), Positives = 62/144 (43%), Gaps = 27/144 (18%)

Query: 112 IGRGGYGTVFLGSLSDN-KAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCL 170
           IG G  G V + +     K +A+KK  +  Q + E   N+VV++   +H NVV +    L
Sbjct: 30  IGEGSTGIVCIATEKHTGKQVAVKKMDLRKQQRRELLFNEVVIMRDYHHENVVDMYNSYL 89

Query: 171 ETEVPLLVNEFVK---LPTISWEVRI---RIA----------------AETAEDIKSINI 208
             +   +V EF++   L  I    R+   +IA                     DIKS +I
Sbjct: 90  VGDELWVVMEFLEGGALTDIVTHTRMNEEQIATVCLSVLRALSYLHNQGVIHRDIKSDSI 149

Query: 209 LLDDNYTTKVCDFG----ASKLVP 228
           LL  +   K+ DFG     SK VP
Sbjct: 150 LLTSDGRIKLSDFGFCAQVSKEVP 173

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly expressed in the brain. It is not required for viability, but together with PAK6, it is required for normal levels of locomotion and activity, and for learning and memory. PAK5 cooperates with Inca (induced in neural crest by AP2) in the regulation of cell adhesion and cytoskeletal organization in the embryo and in neural crest cells during craniofacial development. PAK5 may also play a role in controlling the signaling of Raf-1, an effector of Ras, at the mitochondria. Length = 292

>gnl|CDD|173670 cd05579, STKc_MAST_like, Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins

 Score = 39.2 bits (92), Expect = 0.001
 Identities = 48/169 (28%), Positives = 74/169 (43%), Gaps = 38/169 (22%)

Query: 112 IGRGGYGTVFLG---SLSDNKAI-AIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLG 167
           I +G YG VFL    S  D  AI  IKK+ ++ ++Q++Q + +  +LSQ     VV L  
Sbjct: 1   ISKGAYGRVFLAKKKSTGDIYAIKVIKKADMIRKNQVDQVLTERDILSQAQSPYVVKLY- 59

Query: 168 CCLETEVPL-LVNEFV----------KLPTISWEVRIRIAAETAE-------------DI 203
              + +  L LV E++           + ++  +V     AE                D+
Sbjct: 60  YSFQGKKNLYLVMEYLPGGDLASLLENVGSLDEDVARIYIAEIVLALEYLHSNGIIHRDL 119

Query: 204 KSINILLDDNYTTKVCDFGASKL--------VPIDETQLSTMVQGTLGY 244
           K  NIL+D N   K+ DFG SK+        +  DE +   +V GT  Y
Sbjct: 120 KPDNILIDSNGHLKLTDFGLSKVGLVRRQINLNDDEKEDKRIV-GTPDY 167

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert relative to other kinases. The fungal kinases in this subfamily harbor other domains in addition to a central catalytic domain, which also contains an insert relative to MAST kinases like MASTL. Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. MAST kinases are cytoskeletal associated kinases of unknown function that are also expressed at neuromuscular junctions and postsynaptic densities. The fungal proteins Rim15 and cek1 are involved in the regulation of meiosis and mitosis, respectively. Length = 265

>gnl|CDD|133191 cd05060, PTKc_Syk_like, Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases

 Score = 38.9 bits (91), Expect = 0.001
 Identities = 32/151 (21%), Positives = 61/151 (40%), Gaps = 33/151 (21%)

Query: 112 IGRGGYGTVFLG--SLSDNKAIAI-----KKSRIVYQSQIEQCINKVVVLSQINHRNVVG 164
           +G G +G+V  G   +   K + +     K+  I   +  ++ + +  V++Q++H  +V 
Sbjct: 3   LGHGNFGSVVKGVYLMKSGKEVEVAVKTLKQEHI--AAGKKEFLREASVMAQLDHPCIVR 60

Query: 165 LLGCCLETEVPLLVNEFVKL----------PTISWEVRIRIAAETAE------------- 201
           L+G C   E  +LV E   L            I       +A + A              
Sbjct: 61  LIGVCKG-EPLMLVMELAPLGPLLKYLKKRREIPVSDLKELAHQVAMGMAYLESKHFVHR 119

Query: 202 DIKSINILLDDNYTTKVCDFGASKLVPIDET 232
           D+ + N+LL + +  K+ DFG S+ +     
Sbjct: 120 DLAARNVLLVNRHQAKISDFGMSRALGAGSD 150

Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, migration, and phagocytosis. Syk is important in B-cell receptor (BCR) signaling, while Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Syk also plays a central role in Fc receptor-mediated phagocytosis in the adaptive immune system. Shark is exclusively expressed in ectodermally derived epithelia, and is localized preferentially to the apical surface of the epithelial cells, it may play a role in a signaling pathway for epithelial cell polarity. Length = 257

>gnl|CDD|173727 cd06613, STKc_MAP4K3_like, Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases

 Score = 38.8 bits (91), Expect = 0.001
 Identities = 36/139 (25%), Positives = 59/139 (42%), Gaps = 27/139 (19%)

Query: 112 IGRGGYGTVFLG-SLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCL 170
           IG G YG V+    ++  + +AIK  ++      E    ++ +L +  H N+V   G  L
Sbjct: 11  IGSGTYGDVYKARDIATGELVAIKVIKLEPGDDFEIIQQEISMLKECRHPNIVAYFGSYL 70

Query: 171 ETEVPLLVNEF-----------VKLPTISWEVRIR-IAAETAE-------------DIKS 205
             +   +V E+           V    +S E++I  +  ET +             DIK 
Sbjct: 71  RRDKLWIVMEYCGGGSLQDIYQVTRGPLS-ELQIAYVCRETLKGLAYLHETGKIHRDIKG 129

Query: 206 INILLDDNYTTKVCDFGAS 224
            NILL ++   K+ DFG S
Sbjct: 130 ANILLTEDGDVKLADFGVS 148

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAP4K1, also called haematopoietic progenitor kinase 1 (HPK1), is a hematopoietic-specific STK involved in many cellular signaling cascades including MAPK, antigen receptor, apoptosis, growth factor, and cytokine signaling. It participates in the regulation of T cell receptor signaling and T cell-mediated immune responses. MAP4K2 was referred to as germinal center (GC) kinase because of its preferred location in GC B cells. MAP4K3 plays a role in the nutrient-responsive pathway of mTOR (mammalian target of rapamycin) signaling. It is required in the activation of S6 kinase by amino acids and for the phosphorylation of the mTOR-regulated inhibitor of eukaryotic initiation factor 4E. MAP4K5, also called germinal center kinase-related enzyme (GCKR), has been shown to activate the MAPK c-Jun N-terminal kinase (JNK). Length = 262

>gnl|CDD|133165 cd05033, PTKc_EphR, Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases

 Score = 38.9 bits (91), Expect = 0.001
 Identities = 32/158 (20%), Positives = 63/158 (39%), Gaps = 29/158 (18%)

Query: 109 DRMIGRGGYGTVFLGSLSDNK----AIAIKKSRIVYQ-SQIEQCINKVVVLSQINHRNVV 163
           +++IG G +G V  G L         +AIK  +      Q    + +  ++ Q +H N++
Sbjct: 9   EKVIGGGEFGEVCRGRLKLPGKKEIDVAIKTLKAGSSDKQRLDFLTEASIMGQFDHPNII 68

Query: 164 GLLGCCLETEVPLLVNEFVK---LPT--------ISWEVRIRIAAETA------------ 200
            L G   ++   +++ E+++   L           +    + +    A            
Sbjct: 69  RLEGVVTKSRPVMIITEYMENGSLDKFLRENDGKFTVGQLVGMLRGIASGMKYLSEMNYV 128

Query: 201 -EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTM 237
             D+ + NIL++ N   KV DFG S+ +   E   +T 
Sbjct: 129 HRDLAARNILVNSNLVCKVSDFGLSRRLEDSEATYTTK 166

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. This allows ephrin/EphR dimers to form, leading to the activation of the intracellular tyr kinase domain. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). The main effect of ephrin/EphR interaction is cell-cell repulsion or adhesion. Ephrin/EphR signaling is important in neural development and plasticity, cell morphogenesis and proliferation, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. Length = 266

>gnl|CDD|173748 cd07853, STKc_NLK, Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase

 Score = 39.0 bits (91), Expect = 0.001
 Identities = 41/160 (25%), Positives = 70/160 (43%), Gaps = 34/160 (21%)

Query: 109 DRMIGRGGYGTVFLGSLSD---NKAIAIKKSRIVYQS--QIEQCINKVVVLSQINHRNVV 163
           DR IG G +G V+  S++D    K +A+KK   V+Q+    ++   ++ +L    H NV+
Sbjct: 5   DRPIGYGAFGVVW--SVTDPRDGKRVALKKMPNVFQNLVSCKRVFRELKMLCFFKHDNVL 62

Query: 164 GLL--------GCCLETEV----------------PLLVNEFVKLPT--ISWEVR-IRIA 196
             L            E  V                  L ++ VK+    I   ++ +  A
Sbjct: 63  SALDILQPPHIDPFEEIYVVTELMQSDLHKIIVSPQPLSSDHVKVFLYQILRGLKYLHSA 122

Query: 197 AETAEDIKSINILLDDNYTTKVCDFGASKLVPIDETQLST 236
                DIK  N+L++ N   K+CDFG +++   DE++  T
Sbjct: 123 GILHRDIKPGNLLVNSNCVLKICDFGLARVEEPDESKHMT 162

Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription factors from the TCF/LEF family, inhibiting their ability to activate the transcription of target genes. In prostate cancer cells, NLK is involved in regulating androgen receptor-mediated transcription and its expression is altered during cancer progression. Length = 372

>gnl|CDD|133214 cd05083, PTKc_Chk, Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase

 Score = 38.4 bits (89), Expect = 0.002
 Identities = 35/151 (23%), Positives = 69/151 (45%), Gaps = 33/151 (21%)

Query: 112 IGRGGYGTVFLGSLSDNK-AIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCL 170
           IG G +G V  G  +  K A+   K  +  Q+ +E+      V+++++H+N+V LLG  L
Sbjct: 14  IGEGEFGAVLQGEYTGQKVAVKNIKCDVTAQAFLEE----TAVMTKLHHKNLVRLLGVIL 69

Query: 171 ETEVPLLVNEFVKLPTISWEVR------------IRIAAETAE-------------DIKS 205
              +  +V E +    +   +R            ++ + + AE             D+ +
Sbjct: 70  HNGL-YIVMELMSKGNLVNFLRTRGRALVSVIQLLQFSLDVAEGMEYLESKKLVHRDLAA 128

Query: 206 INILLDDNYTTKVCDFGASKLVP--IDETQL 234
            NIL+ ++   KV DFG +++    +D ++L
Sbjct: 129 RNILVSEDGVAKVSDFGLARVGSMGVDNSKL 159

Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src kinases using a noncatalytic mechanism by simply binding to them. As a negative regulator of Src kinases, Chk may play important roles in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. Chk is expressed in brain and hematopoietic cells. Studies in mice reveal that Chk is not functionally redundant with Csk and that it plays an important role as a regulator of immune responses. Chk also plays a role in neural differentiation in a manner independent of Src by enhancing Mapk activation via Ras-mediated signaling. Length = 254

>gnl|CDD|133178 cd05046, PTK_CCK4, Pseudokinase domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4

 Score = 38.2 bits (89), Expect = 0.002
 Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 7/80 (8%)

Query: 112 IGRGGYGTVFLGSLS------DNKAIAIKKSRIVYQSQIEQCINKVV-VLSQINHRNVVG 164
           +GRG +G VFL              + +K  +      ++    + + +  +++H+NVV 
Sbjct: 13  LGRGEFGEVFLAKAKGIEEEGGETLVLVKALQKTKDENLQSEFRRELDMFRKLSHKNVVR 72

Query: 165 LLGCCLETEVPLLVNEFVKL 184
           LLG C E E   ++ E+  L
Sbjct: 73  LLGLCREAEPHYMILEYTDL 92

Protein Tyrosine Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is still unknown. Other pseudokinases such as HER3 rely on the activity of partner RTKs. Length = 275

>gnl|CDD|173769 cd08229, STKc_Nek7, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7

 Score = 38.1 bits (88), Expect = 0.002
 Identities = 20/63 (31%), Positives = 37/63 (58%), Gaps = 4/63 (6%)

Query: 105 NYAYDRMIGRGGYGTVFLGS-LSDNKAIAIKKSRI--VYQSQIEQ-CINKVVVLSQINHR 160
           N+  ++ IGRG +  V+  + L D   +A+KK +I  +  ++    CI ++ +L Q+NH 
Sbjct: 3   NFRIEKKIGRGQFSEVYRATCLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHP 62

Query: 161 NVV 163
           NV+
Sbjct: 63  NVI 65

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase. Length = 267

>gnl|CDD|173625 cd05032, PTKc_InsR_like, Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases

 Score = 38.1 bits (89), Expect = 0.002
 Identities = 33/162 (20%), Positives = 66/162 (40%), Gaps = 46/162 (28%)

Query: 109 DRMIGRGGYGTVFLG---SLSDNKA---IAIKKSRIVYQ----SQIEQCINKVVVLSQIN 158
            R +G+G +G V+ G    +   +    +AIK    V +     +  + +N+  V+ + N
Sbjct: 11  IRELGQGSFGMVYEGLAKGVVKGEPETRVAIK---TVNENASMRERIEFLNEASVMKEFN 67

Query: 159 HRNVVGLLGCCLETEVPLLVNEFVKL--------------------PTISWEVRIRIAAE 198
             +VV LLG     +  L+V E +                         + +  I++AAE
Sbjct: 68  CHHVVRLLGVVSTGQPTLVVMELMAKGDLKSYLRSRRPEAENNPGLGPPTLQKFIQMAAE 127

Query: 199 TAE-------------DIKSINILLDDNYTTKVCDFGASKLV 227
            A+             D+ + N ++ ++ T K+ DFG ++ +
Sbjct: 128 IADGMAYLAAKKFVHRDLAARNCMVAEDLTVKIGDFGMTRDI 169

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR and IGF-1R, which share 84% sequence identity in their kinase domains, display physiologically distinct yet overlapping functions in cell growth, differentiation, and metabolism. InsR activation leads primarily to metabolic effects while IGF-1R activation stimulates mitogenic pathways. In cells expressing both receptors, InsR/IGF-1R hybrids are found together with classical receptors. Both receptors can interact with common adaptor molecules such as IRS-1 and IRS-2. Length = 277

>gnl|CDD|133227 cd05096, PTKc_DDR1, Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1

 Score = 38.4 bits (89), Expect = 0.002
 Identities = 25/120 (20%), Positives = 50/120 (41%), Gaps = 42/120 (35%)

Query: 148 INKVVVLSQINHRNVVGLLGCCLETEVPLLVNEFVK------------------------ 183
           + +V +LS++   N++ LLG C++ +   ++ E+++                        
Sbjct: 67  LKEVKILSRLKDPNIIRLLGVCVDEDPLCMITEYMENGDLNQFLSSHHLDDKEENGNDAV 126

Query: 184 -----LPTISWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASK 225
                LP IS+   + +A + A              D+ + N L+ +N T K+ DFG S+
Sbjct: 127 PPAHCLPAISYSSLLHVALQIASGMKYLSSLNFVHRDLATRNCLVGENLTIKIADFGMSR 186

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in keratinocytes, colonic mucosa epithelium, lung epithelium, thyroid follicles, and the islets of Langerhans. During embryonic development, it is found in the developing neuroectoderm. DDR1 is a key regulator of cell morphogenesis, differentiation and proliferation. It is important in the development of the mammary gland, the vasculator and the kidney. DDR1 is also found in human leukocytes, where it facilitates cell adhesion, migration, maturation, and cytokine production. Length = 304

>gnl|CDD|132956 cd06625, STKc_MEKK3_like, Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

 Score = 37.9 bits (88), Expect = 0.003
 Identities = 34/151 (22%), Positives = 61/151 (40%), Gaps = 29/151 (19%)

Query: 104 NNYAYDRMIGRGGYGTVFLGSLSDN-KAIAIKKSRIVYQSQ-----IEQCINKVVVLSQI 157
            N+   +++G+G +G V+L    D  + +A+K+      S      +     ++ +L  +
Sbjct: 2   TNWRRGKLLGQGAFGRVYLCYDVDTGRELAVKQVPFDPDSPETKKEVNALECEIQLLKNL 61

Query: 158 NHRNVVGLLGCCLETEVPLLVNEFVKLPTISWEVRIRIA-AETA---------------- 200
            H  +V   GC  + E   +  E++   ++  +++   A  ET                 
Sbjct: 62  QHERIVQYYGCLRDDETLSIFMEYMPGGSVKDQLKAYGALTETVTRKYTRQILEGVEYLH 121

Query: 201 ------EDIKSINILLDDNYTTKVCDFGASK 225
                  DIK  NIL D     K+ DFGASK
Sbjct: 122 SNMIVHRDIKGANILRDSAGNVKLGDFGASK 152

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK2 and MEKK3 activate MEK5 (also called MKK5), which activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development. MEKK2 and MEKK3 can also activate the MAPKs, c-Jun N-terminal kinase (JNK) and p38, through their respective MAPKKs. Length = 263

>gnl|CDD|143345 cd07840, STKc_CDK9_like, Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

 Score = 37.9 bits (89), Expect = 0.003
 Identities = 34/146 (23%), Positives = 58/146 (39%), Gaps = 42/146 (28%)

Query: 112 IGRGGYGTVFLG-SLSDNKAIAIKKSRIVYQSQIEQC------INKVVVLSQINHRNVVG 164
           IG G YG V+   +    + +A+KK R+    + E+       I ++ +L ++ H N+V 
Sbjct: 7   IGEGTYGQVYKARNKKTGELVALKKIRM----ENEKEGFPITAIREIKLLQKLRHPNIVR 62

Query: 165 LLGCCLETEVP---------------LLVNEFVKLPTISWEVRIRIAAETAE-------- 201
           L                         LL +  VK  T S +++     +  E        
Sbjct: 63  LKEIVTSKGKGSIYMVFEYMDHDLTGLLDSPEVKF-TES-QIK-CYMKQLLEGLQYLHSN 119

Query: 202 -----DIKSINILLDDNYTTKVCDFG 222
                DIK  NIL++++   K+ DFG
Sbjct: 120 GILHRDIKGSNILINNDGVLKLADFG 145

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA polymerase II and participate in regulating mutliple steps of gene expression including transcription elongation and RNA processing. CDK9 and CdkC associate with T-type cyclins while BUR1 associates with the cyclin BUR2. CDK12 is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 interacts with cyclins L1 and L2, and participates in regulating transcription and alternative splicing. Length = 287

>gnl|CDD|173655 cd05110, PTKc_HER4, Catalytic domain of the Protein Tyrosine Kinase, HER4

 Score = 37.7 bits (87), Expect = 0.003
 Identities = 33/154 (21%), Positives = 70/154 (45%), Gaps = 31/154 (20%)

Query: 110 RMIGRGGYGTVFLG-------SLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNV 162
           +++G G +GTV+ G       ++    AI I       ++ +E  +++ ++++ ++H ++
Sbjct: 13  KVLGSGAFGTVYKGIWVPEGETVKIPVAIKILNETTGPKANVE-FMDEALIMASMDHPHL 71

Query: 163 VGLLGCCLETEVPLLVN--------EFV--------KLPTISWEVRIRIAAETAE----- 201
           V LLG CL   + L+          ++V            ++W V+I       E     
Sbjct: 72  VRLLGVCLSPTIQLVTQLMPHGCLLDYVHEHKDNIGSQLLLNWCVQIAKGMMYLEERRLV 131

Query: 202 --DIKSINILLDDNYTTKVCDFGASKLVPIDETQ 233
             D+ + N+L+      K+ DFG ++L+  DE +
Sbjct: 132 HRDLAARNVLVKSPNHVKITDFGLARLLEGDEKE 165

Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. Ligands that bind HER4 fall into two groups, the neuregulins (or heregulins) and some EGFR (HER1) ligands including betacellulin, HBEGF, and epiregulin. All four neuregulins (NRG1-4) interact with HER4. Upon ligand binding, HER4 forms homo- or heterodimers with other HER proteins. HER4 is essential in embryonic development. It is implicated in mammary gland, cardiac, and neural development. As a postsynaptic receptor of NRG1, HER4 plays an important role in synaptic plasticity and maturation. The impairment of NRG1/HER4 signaling may contribute to schizophrenia. Length = 303

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	256
KOG1187	361	consensus Serine/threonine protein kinase [Signal	100.0
KOG0595	429	consensus Serine/threonine-protein kinase involved	99.97
KOG0197	468	consensus Tyrosine kinases [Signal transduction me	99.96
KOG1026	774	consensus Nerve growth factor receptor TRKA and re	99.95
KOG0196	996	consensus Tyrosine kinase, EPH (ephrin) receptor f	99.95
KOG0591	375	consensus NIMA (never in mitosis)-related G2-speci	99.95
KOG0615	475	consensus Serine/threonine protein kinase Chk2 and	99.95
KOG0581	364	consensus Mitogen-activated protein kinase kinase	99.95
KOG0598	357	consensus Ribosomal protein S6 kinase and related	99.95
KOG0575	592	consensus Polo-like serine/threonine protein kinas	99.94
KOG0600	560	consensus Cdc2-related protein kinase [Cell cycle	99.94
KOG0192	362	consensus Tyrosine kinase specific for activated (	99.94
KOG0616	355	consensus cAMP-dependent protein kinase catalytic	99.94
KOG1094	807	consensus Discoidin domain receptor DDR1 [Signal t	99.93
KOG0593	396	consensus Predicted protein kinase KKIAMRE [Genera	99.93
KOG0659	318	consensus Cdk activating kinase (CAK)/RNA polymera	99.93
KOG0597	808	consensus Serine-threonine protein kinase FUSED [G	99.92
KOG0694	694	consensus Serine/threonine protein kinase [Signal	99.92
KOG0194	474	consensus Protein tyrosine kinase [Signal transduc	99.92
KOG2052	513	consensus Activin A type IB receptor, serine/threo	99.91
KOG0661	538	consensus MAPK related serine/threonine protein ki	99.91
KOG1095	1025	consensus Protein tyrosine kinase [Signal transduc	99.91
KOG3653	534	consensus Transforming growth factor beta/activin	99.91
KOG0592	604	consensus 3-phosphoinositide-dependent protein kin	99.9
KOG0611	668	consensus Predicted serine/threonine protein kinas	99.9
KOG0582	516	consensus Ste20-like serine/threonine protein kina	99.9
KOG0583	370	consensus Serine/threonine protein kinase [Signal	99.9
KOG0663	419	consensus Protein kinase PITSLRE and related kinas	99.9
KOG0605	550	consensus NDR and related serine/threonine kinases	99.9
KOG0578	550	consensus p21-activated serine/threonine protein k	99.89
cd05621	370	STKc_ROCK2 Catalytic domain of the Protein Serine/	99.89
cd05628	363	STKc_NDR1 Catalytic domain of the Protein Serine/T	99.89
KOG0577	948	consensus Serine/threonine protein kinase [Signal	99.89
cd05096	304	PTKc_DDR1 Catalytic domain of the Protein Tyrosine	99.89
PTZ00263	329	protein kinase A catalytic subunit; Provisional	99.89
cd05102	338	PTKc_VEGFR3 Catalytic domain of the Protein Tyrosi	99.89
cd05600	333	STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p-	99.88
KOG0589	426	consensus Serine/threonine protein kinase [General	99.88
cd05599	364	STKc_NDR_like Catalytic domain of Nuclear Dbf2-Rel	99.88
cd05626	381	STKc_LATS2 Catalytic domain of the Protein Serine/	99.88
KOG0585	576	consensus Ca2+/calmodulin-dependent protein kinase	99.88
PTZ00426	340	cAMP-dependent protein kinase catalytic subunit; P	99.88
cd05622	371	STKc_ROCK1 Catalytic domain of the Protein Serine/	99.88
KOG4278	1157	consensus Protein tyrosine kinase [Signal transduc	99.88
cd05624	331	STKc_MRCK_beta Catalytic domain of the Protein Ser	99.88
cd05625	382	STKc_LATS1 Catalytic domain of the Protein Serine/	99.88
cd05571	323	STKc_PKB Catalytic domain of the Protein Serine/Th	99.88
cd05629	377	STKc_NDR_like_fungal Catalytic domain of Fungal Nu	99.88
cd05597	331	STKc_DMPK_like Catalytic domain of Myotonic Dystro	99.88
cd07848	287	STKc_CDKL5 Catalytic domain of the Serine/Threonin	99.88
KOG0193	678	consensus Serine/threonine protein kinase RAF [Sig	99.88
cd05631	285	STKc_GRK4 Catalytic domain of the Protein Serine/T	99.88
cd05595	323	STKc_PKB_beta Catalytic domain of the Protein Seri	99.87
cd05593	328	STKc_PKB_gamma Catalytic domain of the Protein Ser	99.87
KOG0594	323	consensus Protein kinase PCTAIRE and related kinas	99.87
cd05596	370	STKc_ROCK Catalytic domain of the Protein Serine/T	99.87
cd05598	376	STKc_LATS Catalytic domain of the Protein Serine/T	99.87
cd05612	291	STKc_PRKX_like Catalytic domain of PRKX-like Prote	99.87
cd05601	330	STKc_CRIK Catalytic domain of the Protein Serine/T	99.87
PHA03212	391	serine/threonine kinase US3; Provisional	99.87
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	99.87
cd05594	325	STKc_PKB_alpha Catalytic domain of the Protein Ser	99.87
cd05104	375	PTKc_Kit Catalytic domain of the Protein Tyrosine	99.87
KOG0580	281	consensus Serine/threonine protein kinase [Cell cy	99.87
PTZ00267	478	NIMA-related protein kinase; Provisional	99.87
cd05585	312	STKc_YPK1_like Catalytic domain of Yeast Protein K	99.87
KOG0032	382	consensus Ca2+/calmodulin-dependent protein kinase	99.87
KOG0201	467	consensus Serine/threonine protein kinase [Signal	99.87
cd05623	332	STKc_MRCK_alpha Catalytic domain of the Protein Se	99.87
cd07869	303	STKc_PFTAIRE1 Catalytic domain of the Serine/Threo	99.87
KOG4250	732	consensus TANK binding protein kinase TBK1 [Signal	99.87
cd07871	288	STKc_PCTAIRE3 Catalytic domain of the Serine/Threo	99.87
cd06649	331	PKc_MEK2 Catalytic domain of the dual-specificity	99.87
cd05627	360	STKc_NDR2 Catalytic domain of the Protein Serine/T	99.87
KOG4257	974	consensus Focal adhesion tyrosine kinase FAK, cont	99.86
cd05573	350	STKc_ROCK_NDR_like Catalytic domain of ROCK- and N	99.86
cd05618	329	STKc_aPKC_iota Catalytic domain of the Protein Ser	99.86
cd05587	324	STKc_cPKC Catalytic domain of the Protein Serine/T	99.86
cd05614	332	STKc_MSK2_N N-terminal catalytic domain of the Pro	99.86
cd05105	400	PTKc_PDGFR_alpha Catalytic domain of the Protein T	99.86
cd05616	323	STKc_cPKC_beta Catalytic domain of the Protein Ser	99.86
KOG0574	502	consensus STE20-like serine/threonine kinase MST [	99.86
cd05589	324	STKc_PKN Catalytic domain of the Protein Serine/Th	99.86
PLN00034	353	mitogen-activated protein kinase kinase; Provision	99.86
cd06650	333	PKc_MEK1 Catalytic domain of the dual-specificity	99.86
cd05072	261	PTKc_Lyn Catalytic domain of the Protein Tyrosine	99.86
cd05106	374	PTKc_CSF-1R Catalytic domain of the Protein Tyrosi	99.86
KOG4721	904	consensus Serine/threonine protein kinase, contain	99.86
cd05584	323	STKc_p70S6K Catalytic domain of the Protein Serine	99.86
KOG0198	313	consensus MEKK and related serine/threonine protei	99.86
cd05592	316	STKc_nPKC_theta_delta Catalytic domain of the Prot	99.86
cd05591	321	STKc_nPKC_epsilon Catalytic domain of the Protein	99.86
KOG0588	786	consensus Serine/threonine protein kinase [Cell cy	99.86
cd05064	266	PTKc_EphR_A10 Catalytic domain of the Protein Tyro	99.86
cd05588	329	STKc_aPKC Catalytic domain of the Protein Serine/T	99.85
cd05068	261	PTKc_Frk_like Catalytic domain of Fyn-related kina	99.85
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	99.85
cd05615	323	STKc_cPKC_alpha Catalytic domain of the Protein Se	99.85
cd07853	372	STKc_NLK Catalytic domain of the Serine/Threonine	99.85
KOG1025	1177	consensus Epidermal growth factor receptor EGFR an	99.85
cd05582	318	STKc_RSK_N N-terminal catalytic domain of the Prot	99.85
PHA02988	283	hypothetical protein; Provisional	99.85
cd05114	256	PTKc_Tec_Rlk Catalytic domain of the Protein Tyros	99.85
KOG4236	888	consensus Serine/threonine protein kinase PKC mu/P	99.85
KOG0658	364	consensus Glycogen synthase kinase-3 [Carbohydrate	99.85
cd05590	320	STKc_nPKC_eta Catalytic domain of the Protein Seri	99.85
cd05604	325	STKc_SGK3 Catalytic domain of the Protein Serine/T	99.85
cd05605	285	STKc_GRK4_like Catalytic domain of G protein-coupl	99.85
KOG0662	292	consensus Cyclin-dependent kinase CDK5 [Intracellu	99.85
KOG0586	596	consensus Serine/threonine protein kinase [General	99.85
cd07859	338	STKc_TDY_MAPK_plant Catalytic domain of the Serine	99.85
KOG0690	516	consensus Serine/threonine protein kinase [Signal	99.85
cd05603	321	STKc_SGK2 Catalytic domain of the Protein Serine/T	99.85
cd05575	323	STKc_SGK Catalytic domain of the Protein Serine/Th	99.85
KOG0660	359	consensus Mitogen-activated protein kinase [Signal	99.85
cd05617	327	STKc_aPKC_zeta Catalytic domain of the Protein Ser	99.85
cd06619	279	PKc_MKK5 Catalytic domain of the dual-specificity	99.85
cd05620	316	STKc_nPKC_delta Catalytic domain of the Protein Se	99.84
cd05619	316	STKc_nPKC_theta Catalytic domain of the Protein Se	99.84
cd05148	261	PTKc_Srm_Brk Catalytic domain of the Protein Tyros	99.84
KOG1989	738	consensus ARK protein kinase family [Signal transd	99.84
cd05113	256	PTKc_Btk_Bmx Catalytic domain of the Protein Tyros	99.84
cd07872	309	STKc_PCTAIRE2 Catalytic domain of the Serine/Threo	99.84
cd05107	401	PTKc_PDGFR_beta Catalytic domain of the Protein Ty	99.84
cd05608	280	STKc_GRK1 Catalytic domain of the Protein Serine/T	99.84
cd07862	290	STKc_CDK6 Catalytic domain of the Serine/Threonine	99.84
cd05602	325	STKc_SGK1 Catalytic domain of the Protein Serine/T	99.84
cd05071	262	PTKc_Src Catalytic domain of the Protein Tyrosine	99.84
cd05570	318	STKc_PKC Catalytic domain of the Protein Serine/Th	99.84
KOG0986	591	consensus G protein-coupled receptor kinase [Signa	99.84
PTZ00283	496	serine/threonine protein kinase; Provisional	99.84
cd05067	260	PTKc_Lck_Blk Catalytic domain of the Protein Tyros	99.84
cd07876	359	STKc_JNK2 Catalytic domain of the Serine/Threonine	99.84
cd05097	295	PTKc_DDR_like Catalytic domain of Discoidin Domain	99.84
cd05034	261	PTKc_Src_like Catalytic domain of Src kinase-like	99.84
cd05054	337	PTKc_VEGFR Catalytic domain of the Protein Tyrosin	99.84
cd05052	263	PTKc_Abl Catalytic domain of the Protein Tyrosine	99.84
cd05103	343	PTKc_VEGFR2 Catalytic domain of the Protein Tyrosi	99.84
cd05059	256	PTKc_Tec_like Catalytic domain of Tec-like Protein	99.83
cd05049	280	PTKc_Trk Catalytic domain of the Protein Tyrosine	99.83
cd05033	266	PTKc_EphR Catalytic domain of Ephrin Receptor Prot	99.83
PHA03211	461	serine/threonine kinase US3; Provisional	99.83
cd06656	297	STKc_PAK3 Catalytic domain of the Protein Serine/T	99.83
cd05061	288	PTKc_InsR Catalytic domain of the Protein Tyrosine	99.83
cd05093	288	PTKc_TrkB Catalytic domain of the Protein Tyrosine	99.83
cd05062	277	PTKc_IGF-1R Catalytic domain of the Protein Tyrosi	99.83
cd05073	260	PTKc_Hck Catalytic domain of the Protein Tyrosine	99.83
cd05090	283	PTKc_Ror1 Catalytic domain of the Protein Tyrosine	99.83
KOG0599	411	consensus Phosphorylase kinase gamma subunit [Carb	99.83
cd07875	364	STKc_JNK1 Catalytic domain of the Serine/Threonine	99.83
cd06646	267	STKc_MAP4K5 Catalytic domain of the Protein Serine	99.83
cd05108	316	PTKc_EGFR Catalytic domain of the Protein Tyrosine	99.83
cd05066	267	PTKc_EphR_A Catalytic domain of the Protein Tyrosi	99.83
cd05085	250	PTKc_Fer Catalytic domain of the Protein Tyrosine	99.83
cd05032	277	PTKc_InsR_like Catalytic domain of Insulin Recepto	99.83
cd05632	285	STKc_GRK5 Catalytic domain of the Protein Serine/T	99.83
cd07874	355	STKc_JNK3 Catalytic domain of the Serine/Threonine	99.83
cd06654	296	STKc_PAK1 Catalytic domain of the Protein Serine/T	99.83
PHA03209	357	serine/threonine kinase US3; Provisional	99.83
cd05070	260	PTKc_Fyn_Yrk Catalytic domain of the Protein Tyros	99.82
cd06615	308	PKc_MEK Catalytic domain of the dual-specificity P	99.82
cd06644	292	STKc_STK10_LOK Catalytic domain of the Protein Ser	99.82
cd05607	277	STKc_GRK7 Catalytic domain of the Protein Serine/T	99.82
cd06611	280	STKc_SLK_like Catalytic domain of Ste20-like kinas	99.82
cd05580	290	STKc_PKA Catalytic domain of the Protein Serine/Th	99.82
cd05630	285	STKc_GRK6 Catalytic domain of the Protein Serine/T	99.82
cd08228	267	STKc_Nek6 Catalytic domain of the Protein Serine/T	99.82
PTZ00036	440	glycogen synthase kinase; Provisional	99.82
cd07873	301	STKc_PCTAIRE1 Catalytic domain of the Serine/Threo	99.82
cd06625	263	STKc_MEKK3_like Catalytic domain of MAP/ERK kinase	99.82
cd08529	256	STKc_FA2-like Catalytic domain of the Protein Seri	99.82
cd05069	260	PTKc_Yes Catalytic domain of the Protein Tyrosine	99.82
PHA03207	392	serine/threonine kinase US3; Provisional	99.82
cd05048	283	PTKc_Ror Catalytic Domain of the Protein Tyrosine	99.82
cd05095	296	PTKc_DDR2 Catalytic domain of the Protein Tyrosine	99.82
cd06655	296	STKc_PAK2 Catalytic domain of the Protein Serine/T	99.82
cd05039	256	PTKc_Csk_like Catalytic domain of C-terminal Src k	99.82
PF00069	260	Pkinase: Protein kinase domain Protein kinase; unc	99.82
PRK09188	365	serine/threonine protein kinase; Provisional	99.82
PF07714	259	Pkinase_Tyr: Protein tyrosine kinase Protein kinas	99.81
cd06613	262	STKc_MAP4K3_like Catalytic domain of Mitogen-activ	99.81
cd06645	267	STKc_MAP4K3 Catalytic domain of the Protein Serine	99.81
cd05051	296	PTKc_DDR Catalytic domain of the Protein Tyrosine	99.81
cd08219	255	STKc_Nek3 Catalytic domain of the Protein Serine/T	99.81
PHA03210	501	serine/threonine kinase US3; Provisional	99.81
KOG0199	1039	consensus ACK and related non-receptor tyrosine ki	99.81
cd08221	256	STKc_Nek9 Catalytic domain of the Protein Serine/T	99.81
cd08224	267	STKc_Nek6_Nek7 Catalytic domain of the Protein Ser	99.81
cd06643	282	STKc_SLK Catalytic domain of the Protein Serine/Th	99.81
cd08229	267	STKc_Nek7 Catalytic domain of the Protein Serine/T	99.81
cd07868	317	STKc_CDK8 Catalytic domain of the Serine/Threonine	99.81
cd05091	283	PTKc_Ror2 Catalytic domain of the Protein Tyrosine	99.81
cd05094	291	PTKc_TrkC Catalytic domain of the Protein Tyrosine	99.81
KOG0666	438	consensus Cyclin C-dependent kinase CDK8 [Transcri	99.81
KOG0579	1187	consensus Ste20-like serine/threonine protein kina	99.81
cd05092	280	PTKc_TrkA Catalytic domain of the Protein Tyrosine	99.81
cd05053	293	PTKc_FGFR Catalytic domain of the Protein Tyrosine	99.81
cd05081	284	PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of	99.81
cd05586	330	STKc_Sck1_like Catalytic domain of Suppressor of l	99.81
cd05111	279	PTK_HER3 Pseudokinase domain of the Protein Tyrosi	99.81
cd05035	273	PTKc_Axl_like Catalytic Domain of Axl-like Protein	99.81
cd06647	293	STKc_PAK_I Catalytic domain of the Protein Serine/	99.8
cd07861	285	STKc_CDK1_euk Catalytic domain of the Serine/Threo	99.8
cd06631	265	STKc_YSK4 Catalytic domain of the Protein Serine/T	99.8
cd05101	304	PTKc_FGFR2 Catalytic domain of the Protein Tyrosin	99.8
cd06659	297	STKc_PAK6 Catalytic domain of the Protein Serine/T	99.8
cd05079	284	PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the	99.8
cd06641	277	STKc_MST3 Catalytic domain of the Protein Serine/T	99.8
cd05056	270	PTKc_FAK Catalytic domain of the Protein Tyrosine	99.8
KOG0033	355	consensus Ca2+/calmodulin-dependent protein kinase	99.8
cd07847	286	STKc_CDKL1_4 Catalytic domain of the Serine/Threon	99.8
cd07878	343	STKc_p38beta_MAPK11 Catalytic domain of the Serine	99.8
cd07870	291	STKc_PFTAIRE2 Catalytic domain of the Serine/Threo	99.8
cd05055	302	PTKc_PDGFR Catalytic domain of the Protein Tyrosin	99.8
cd05075	272	PTKc_Axl Catalytic domain of the Protein Tyrosine	99.8
cd05099	314	PTKc_FGFR4 Catalytic domain of the Protein Tyrosin	99.8
KOG0610	459	consensus Putative serine/threonine protein kinase	99.8
cd06609	274	STKc_MST3_like Catalytic domain of Mammalian Ste20	99.8
cd05046	275	PTK_CCK4 Pseudokinase domain of the Protein Tyrosi	99.8
cd05098	307	PTKc_FGFR1 Catalytic domain of the Protein Tyrosin	99.8
cd06624	268	STKc_ASK Catalytic domain of the Protein Serine/Th	99.8
cd05050	288	PTKc_Musk Catalytic domain of the Protein Tyrosine	99.8
cd06612	256	STKc_MST1_2 Catalytic domain of the Protein Serine	99.8
cd07867	317	STKc_CDC2L6 Catalytic domain of Serine/Threonine K	99.8
KOG0200	609	consensus Fibroblast/platelet-derived growth facto	99.8
cd06638	286	STKc_myosinIIIA Catalytic domain of the Protein Se	99.8
cd06620	284	PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr	99.8
cd06652	265	STKc_MEKK2 Catalytic domain of the Protein Serine/	99.8
cd05045	290	PTKc_RET Catalytic domain of the Protein Tyrosine	99.8
cd05112	256	PTKc_Itk Catalytic domain of the Protein Tyrosine	99.8
cd05084	252	PTKc_Fes Catalytic domain of the Protein Tyrosine	99.79
cd07833	288	STKc_CDKL Catalytic domain of Cyclin-Dependent pro	99.79
cd05088	303	PTKc_Tie2 Catalytic domain of the Protein Tyrosine	99.79
cd05065	269	PTKc_EphR_B Catalytic domain of the Protein Tyrosi	99.79
cd05100	334	PTKc_FGFR3 Catalytic domain of the Protein Tyrosin	99.79
cd06658	292	STKc_PAK5 Catalytic domain of the Protein Serine/T	99.79
cd07832	286	STKc_CCRK Catalytic domain of the Serine/Threonine	99.79
cd05609	305	STKc_MAST Catalytic domain of the Protein Serine/T	99.79
cd06632	258	STKc_MEKK1_plant Catalytic domain of the Protein S	99.79
smart00219	258	TyrKc Tyrosine kinase, catalytic domain. Phosphotr	99.79
cd06628	267	STKc_MAPKKK_Byr2_like Catalytic domain of fungal B	99.79
KOG0667	586	consensus Dual-specificity tyrosine-phosphorylatio	99.79
KOG0696	683	consensus Serine/threonine protein kinase [Signal	99.79
cd06622	286	PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS	99.79
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.79
cd05080	283	PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the	99.79
cd05063	268	PTKc_EphR_A2 Catalytic domain of the Protein Tyros	99.79
cd07846	286	STKc_CDKL2_3 Catalytic domain of the Serine/Threon	99.79
cd06626	264	STKc_MEKK4 Catalytic domain of the Protein Serine/	99.79
cd06640	277	STKc_MST4 Catalytic domain of the Protein Serine/T	99.79
cd07863	288	STKc_CDK4 Catalytic domain of the Serine/Threonine	99.79
cd07844	291	STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like	99.79
cd06637	272	STKc_TNIK Catalytic domain of the Protein Serine/T	99.79
cd08218	256	STKc_Nek1 Catalytic domain of the Protein Serine/T	99.79
cd05115	257	PTKc_Zap-70 Catalytic domain of the Protein Tyrosi	99.79
cd05041	251	PTKc_Fes_like Catalytic domain of Fes-like Protein	99.79
cd06642	277	STKc_STK25-YSK1 Catalytic domain of the Protein Se	99.79
cd05036	277	PTKc_ALK_LTK Catalytic domain of the Protein Tyros	99.79
cd05610	669	STKc_MASTL Catalytic domain of the Protein Serine/	99.79
cd06617	283	PKc_MKK3_6 Catalytic domain of the dual-specificit	99.78
cd07839	284	STKc_CDK5 Catalytic domain of the Serine/Threonine	99.78
cd07842	316	STKc_CDK8_like Catalytic domain of Cyclin-Dependen	99.78
cd05087	269	PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein	99.78
cd05109	279	PTKc_HER2 Catalytic domain of the Protein Tyrosine	99.78
cd06651	266	STKc_MEKK3 Catalytic domain of the Protein Serine/	99.78
cd05043	280	PTK_Ryk Pseudokinase domain of Ryk (Receptor relat	99.78
cd05089	297	PTKc_Tie1 Catalytic domain of the Protein Tyrosine	99.78
cd05042	269	PTKc_Aatyk Catalytic domain of the Protein Tyrosin	99.78
cd05082	256	PTKc_Csk Catalytic domain of the Protein Tyrosine	99.78
cd07864	302	STKc_CDK12 Catalytic domain of the Serine/Threonin	99.78
KOG1151	775	consensus Tousled-like protein kinase [Signal tran	99.78
cd06607	307	STKc_TAO Catalytic domain of the Protein Serine/Th	99.78
cd07841	298	STKc_CDK7 Catalytic domain of the Serine/Threonine	99.78
cd08223	257	STKc_Nek4 Catalytic domain of the Protein Serine/T	99.78
cd07836	284	STKc_Pho85 Catalytic domain of the Serine/Threonin	99.78
cd06657	292	STKc_PAK4 Catalytic domain of the Protein Serine/T	99.78
cd05057	279	PTKc_EGFR_like Catalytic domain of Epidermal Growt	99.78
cd06653	264	STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kina	99.77
cd07843	293	STKc_CDC2L1 Catalytic domain of the Serine/Threoni	99.77
cd07860	284	STKc_CDK2_3 Catalytic domain of the Serine/Threoni	99.77
cd06610	267	STKc_OSR1_SPAK Catalytic domain of the Protein Ser	99.77
cd07849	336	STKc_ERK1_2_like Catalytic domain of Extracellular	99.77
cd08528	269	STKc_Nek10 Catalytic domain of the Protein Serine/	99.77
PTZ00266	1021	NIMA-related protein kinase; Provisional	99.77
cd05040	257	PTKc_Ack_like Catalytic domain of the Protein Tyro	99.77
cd05574	316	STKc_phototropin_like Catalytic domain of Phototro	99.77
cd05578	258	STKc_Yank1 Catalytic domain of the Protein Serine/	99.77
KOG1006	361	consensus Mitogen-activated protein kinase (MAPK)	99.77
cd06639	291	STKc_myosinIIIB Catalytic domain of the Protein Se	99.77
cd05076	274	PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of th	99.77
cd07850	353	STKc_JNK Catalytic domain of the Serine/Threonine	99.77
cd06629	272	STKc_MAPKKK_Bck1_like Catalytic domain of fungal B	99.77
cd05086	268	PTKc_Aatyk2 Catalytic domain of the Protein Tyrosi	99.77
cd07840	287	STKc_CDK9_like Catalytic domain of Cyclin-Dependen	99.77
cd06630	268	STKc_MEKK1 Catalytic domain of the Protein Serine/	99.77
cd05037	259	PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the	99.77
cd05077	262	PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of th	99.77
cd05083	254	PTKc_Chk Catalytic domain of the Protein Tyrosine	99.77
cd05613	290	STKc_MSK1_N N-terminal catalytic domain of the Pro	99.77
cd05058	262	PTKc_Met_Ron Catalytic domain of the Protein Tyros	99.77
cd06623	264	PKc_MAPKK_plant_like Catalytic domain of Plant dua	99.77
cd06616	288	PKc_MKK4 Catalytic domain of the dual-specificity	99.77
cd06648	285	STKc_PAK_II Catalytic domain of the Protein Serine	99.77
cd07837	295	STKc_CdkB_plant Catalytic domain of the Serine/Thr	99.77
cd06621	287	PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek	99.76
cd05038	284	PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the P	99.76
cd06627	254	STKc_Cdc7_like Catalytic domain of Cell division c	99.76
cd06917	277	STKc_NAK1_like Catalytic domain of Fungal Nak1-lik	99.76
PTZ00284	467	protein kinase; Provisional	99.76
PLN00009	294	cyclin-dependent kinase A; Provisional	99.76
cd05116	257	PTKc_Syk Catalytic domain of the Protein Tyrosine	99.76
cd06605	265	PKc_MAPKK Catalytic domain of the dual-specificity	99.76
KOG1035	1351	consensus eIF-2alpha kinase GCN2 [Translation, rib	99.76
cd07845	309	STKc_CDK10 Catalytic domain of the Serine/Threonin	99.76
cd06635	317	STKc_TAO1 Catalytic domain of the Protein Serine/T	99.76
cd05122	253	PKc_STE Catalytic domain of STE family Protein Kin	99.76
cd05047	270	PTKc_Tie Catalytic domain of Tie Protein Tyrosine	99.76
cd08220	256	STKc_Nek8 Catalytic domain of the Protein Serine/T	99.76
cd07852	337	STKc_MAPK15 Catalytic domain of the Serine/Threoni	99.76
cd08225	257	STKc_Nek5 Catalytic domain of the Protein Serine/T	99.76
cd05110	303	PTKc_HER4 Catalytic domain of the Protein Tyrosine	99.75
cd06614	286	STKc_PAK Catalytic domain of the Protein Serine/Th	99.75
cd05060	257	PTKc_Syk_like Catalytic domain of Spleen Tyrosine	99.75
cd00192	262	PTKc Catalytic domain of Protein Tyrosine Kinases.	99.75
cd06618	296	PKc_MKK7 Catalytic domain of the dual-specificity	99.75
cd08215	258	STKc_Nek Catalytic domain of the Protein Serine/Th	99.75
cd07858	337	STKc_TEY_MAPK_plant Catalytic domain of the Serine	99.75
cd05577	277	STKc_GRK Catalytic domain of the Protein Serine/Th	99.75
cd07865	310	STKc_CDK9 Catalytic domain of the Serine/Threonine	99.75
cd06636	282	STKc_MAP4K4_6 Catalytic domain of the Protein Seri	99.75
cd07855	334	STKc_ERK5 Catalytic domain of the Serine/Threonine	99.75
KOG0984	282	consensus Mitogen-activated protein kinase (MAPK)	99.75
cd05583	288	STKc_MSK_N N-terminal catalytic domain of the Prot	99.75
KOG0608	1034	consensus Warts/lats-like serine threonine kinases	99.75
KOG4717	864	consensus Serine/threonine protein kinase [Signal	99.75
KOG0669	376	consensus Cyclin T-dependent kinase CDK9 [Cell cyc	99.75
cd08227	327	PK_STRAD_alpha Pseudokinase domain of STE20-relate	99.75
cd05572	262	STKc_cGK_PKG Catalytic domain of the Protein Serin	99.74
KOG0584	632	consensus Serine/threonine protein kinase [General	99.74
KOG0587	953	consensus Traf2- and Nck-interacting kinase and re	99.74
PHA02882	294	putative serine/threonine kinase; Provisional	99.74
cd08217	265	STKc_Nek2 Catalytic domain of the Protein Serine/T	99.74
cd05074	273	PTKc_Tyro3 Catalytic domain of the Protein Tyrosin	99.74
cd07834	330	STKc_MAPK Catalytic domain of the Serine/Threonine	99.74
cd06608	275	STKc_myosinIII_like Catalytic domain of Class III	99.74
cd07831	282	STKc_MOK Catalytic domain of the Serine/Threonine	99.74
cd07835	283	STKc_CDK1_like Catalytic domain of Cyclin-Dependen	99.74
cd05579	265	STKc_MAST_like Catalytic domain of Microtubule-ass	99.74
cd07880	343	STKc_p38gamma_MAPK12 Catalytic domain of the Serin	99.74
cd05581	280	STKc_PDK1 Catalytic domain of the Protein Serine/T	99.73
cd05633	279	STKc_GRK3 Catalytic domain of the Protein Serine/T	99.73
cd07877	345	STKc_p38alpha_MAPK14 Catalytic domain of the Serin	99.73
cd05078	258	PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain	99.73
cd06634	308	STKc_TAO2 Catalytic domain of the Protein Serine/T	99.73
cd07866	311	STKc_BUR1 Catalytic domain of the Serine/Threonine	99.73
KOG2345	302	consensus Serine/threonine protein kinase/TGF-beta	99.73
cd08530	256	STKc_CNK2-like Catalytic domain of the Protein Ser	99.73
cd06633	313	STKc_TAO3 Catalytic domain of the Protein Serine/T	99.73
KOG0596	677	consensus Dual specificity; serine/threonine and t	99.73
cd05611	260	STKc_Rim15_like Catalytic domain of fungal Rim15-l	99.72
cd06606	260	STKc_MAPKKK Catalytic domain of the Protein Serine	99.72
cd07879	342	STKc_p38delta_MAPK13 Catalytic domain of the Serin	99.72
PLN03224	507	probable serine/threonine protein kinase; Provisio	99.72
cd05044	269	PTKc_c-ros Catalytic domain of the Protein Tyrosin	99.72
cd07854	342	STKc_MAPK4_6 Catalytic domain of the Serine/Threon	99.72
cd07856	328	STKc_Sty1_Hog1 Catalytic domain of the Serine/Thre	99.72
cd07838	287	STKc_CDK4_6_like Catalytic domain of Cyclin-Depend	99.72
PTZ00024	335	cyclin-dependent protein kinase; Provisional	99.72
cd05118	283	STKc_CMGC Catalytic domain of CMGC family Serine/T	99.72
KOG0576	829	consensus Mitogen-activated protein kinase kinase	99.71
KOG0607	463	consensus MAP kinase-interacting kinase and relate	99.71
cd05606	278	STKc_beta_ARK Catalytic domain of the Protein Seri	99.71
cd07857	332	STKc_MPK1 Catalytic domain of the Serine/Threonine	99.71
KOG0983	391	consensus Mitogen-activated protein kinase (MAPK)	99.71
KOG0695	593	consensus Serine/threonine protein kinase [Signal	99.71
cd07830	283	STKc_MAK_like Catalytic domain of Male germ cell-A	99.69
KOG0614	732	consensus cGMP-dependent protein kinase [Signal tr	99.69
cd07829	282	STKc_CDK_like Catalytic domain of Cyclin-Dependent	99.69
KOG1152	772	consensus Signal transduction serine/threonine kin	99.69
KOG1027	903	consensus Serine/threonine protein kinase and endo	99.69
KOG4279	1226	consensus Serine/threonine protein kinase [Signal	99.69
cd05147	190	RIO1_euk RIO kinase family; eukaryotic RIO1, catal	99.69
cd07851	343	STKc_p38 Catalytic domain of the Serine/Threonine	99.69
cd05145	190	RIO1_like RIO kinase family; RIO1, RIO3 and simila	99.68
cd08222	260	STKc_Nek11 Catalytic domain of the Protein Serine/	99.68
PHA03390	267	pk1 serine/threonine-protein kinase 1; Provisional	99.68
KOG4645	1509	consensus MAPKKK (MAP kinase kinase kinase) SSK2 a	99.67
cd05123	250	STKc_AGC Catalytic domain of AGC family Protein Se	99.67
KOG0604	400	consensus MAP kinase-activated protein kinase 2 [S	99.67
KOG0664	449	consensus Nemo-like MAPK-related serine/threonine	99.67
smart00221	225	STYKc Protein kinase; unclassified specificity. Ph	99.66
cd08216	314	PK_STRAD Pseudokinase domain of STE20-related kina	99.65
cd08226	328	PK_STRAD_beta Pseudokinase domain of STE20-related	99.64
PRK10359	232	lipopolysaccharide core biosynthesis protein; Prov	99.61
KOG0668	338	consensus Casein kinase II, alpha subunit [Signal	99.6
cd05576	237	STKc_RPK118_like Catalytic domain of the Protein S	99.6
PLN03225	566	Serine/threonine-protein kinase SNT7; Provisional	99.57
smart00220	244	S_TKc Serine/Threonine protein kinases, catalytic	99.56
PRK10345	210	hypothetical protein; Provisional	99.56
cd05144	198	RIO2_C RIO kinase family; RIO2, C-terminal catalyt	99.56
KOG0603	612	consensus Ribosomal protein S6 kinase [Signal tran	99.53
KOG1024	563	consensus Receptor-like protein tyrosine kinase RY	99.53
cd00180	215	PKc Catalytic domain of Protein Kinases. Protein K	99.52
PRK14879	211	serine/threonine protein kinase; Provisional	99.52
KOG1165	449	consensus Casein kinase (serine/threonine/tyrosine	99.52
KOG1163	341	consensus Casein kinase (serine/threonine/tyrosine	99.51
PRK09605	535	bifunctional UGMP family protein/serine/threonine	99.51
TIGR03724	199	arch_bud32 Kae1-associated kinase Bud32. Members o	99.49
PRK12274	218	serine/threonine protein kinase; Provisional	99.48
KOG0671	415	consensus LAMMER dual specificity kinases [Signal	99.48
smart00090	237	RIO RIO-like kinase.	99.48
KOG0670	752	consensus U4/U6-associated splicing factor PRP4 [R	99.43
KOG1345	378	consensus Serine/threonine kinase [Signal transduc	99.43
KOG0665	369	consensus Jun-N-terminal kinase (JNK) [Signal tran	99.4
cd05120	155	APH_ChoK_like Aminoglycoside 3'-phosphotransferase	99.39
KOG1164	322	consensus Casein kinase (serine/threonine/tyrosine	99.36
cd05119	187	RIO RIO kinase family, catalytic domain. The RIO k	99.35
TIGR01982	437	UbiB 2-polyprenylphenol 6-hydroxylase. This model	99.3
KOG1167	418	consensus Serine/threonine protein kinase of the C	99.27
COG0515	384	SPS1 Serine/threonine protein kinase [General func	99.21
PRK01723	239	3-deoxy-D-manno-octulosonic-acid kinase; Reviewed	99.19
PRK04750	537	ubiB putative ubiquinone biosynthesis protein UbiB	99.18
KOG1290	590	consensus Serine/threonine protein kinase [Signal	99.14
KOG1166	974	consensus Mitotic checkpoint serine/threonine prot	99.08
cd05151	170	ChoK Choline Kinase (ChoK). The ChoK subfamily is	98.89
KOG0603	612	consensus Ribosomal protein S6 kinase [Signal tran	98.77
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	98.77
PLN00181	793	protein SPA1-RELATED; Provisional	98.66
cd05154	223	ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 an	98.53
KOG0590	601	consensus Checkpoint kinase and related serine/thr	98.46
cd05146	197	RIO3_euk RIO kinase family; eukaryotic RIO3, catal	98.38
COG3642	204	Mn2+-dependent serine/threonine protein kinase [Si	98.36
KOG3087	229	consensus Serine/threonine protein kinase [General	98.3
COG0661	517	AarF Predicted unusual protein kinase [General fun	98.11
PF01163	188	RIO1: RIO1 family; InterPro: IPR018934 Protein pho	98.0
KOG0590	601	consensus Checkpoint kinase and related serine/thr	98.0
KOG0606	1205	consensus Microtubule-associated serine/threonine	97.96
KOG1033	516	consensus eIF-2alpha kinase PEK/EIF2AK3 [Translati	97.95
COG0478	304	RIO-like serine/threonine protein kinase fused to	97.8
PF14531	288	Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_	97.78
TIGR02172	226	Fb_sc_TIGR02172 Fibrobacter succinogenes paralogou	97.78
KOG0601	524	consensus Cyclin-dependent kinase WEE1 [Cell cycle	97.78
KOG1023	484	consensus Natriuretic peptide receptor, guanylate	97.76
PF13095	207	FTA2: Kinetochore Sim4 complex subunit FTA2	97.72
COG2112	201	Predicted Ser/Thr protein kinase [Signal transduct	97.72
KOG0601	524	consensus Cyclin-dependent kinase WEE1 [Cell cycle	97.68
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	97.67
smart00750	176	KIND kinase non-catalytic C-lobe domain. It is an	97.63
PRK15123	268	lipopolysaccharide core heptose(I) kinase RfaP; Pr	97.59
KOG1243	690	consensus Protein kinase [General function predict	97.59
KOG4158	598	consensus BRPK/PTEN-induced protein kinase [Signal	97.58
PF01636	239	APH: Phosphotransferase enzyme family This family	97.55
cd05150	244	APH Aminoglycoside 3'-phosphotransferase (APH). Th	97.5
KOG1235	538	consensus Predicted unusual protein kinase [Genera	97.48
PF06176	229	WaaY: Lipopolysaccharide core biosynthesis protein	97.45
PF12260	188	PIP49_C: Protein-kinase domain of FAM69; InterPro:	97.37
PRK09550	401	mtnK methylthioribose kinase; Reviewed	97.37
KOG3741	655	consensus Poly(A) ribonuclease subunit [RNA proces	97.35
PF10707	199	YrbL-PhoP_reg: PhoP regulatory network protein Yrb	97.31
TIGR02721	256	ycfN_thiK thiamine kinase. Members of this family	96.95
PRK09902	216	hypothetical protein; Provisional	96.86
PLN02876	822	acyl-CoA dehydrogenase	96.82
cd05157	235	ETNK_euk Ethanolamine kinase (ETNK) in eukaryotes.	96.62
cd05153	296	HomoserineK_II Homoserine Kinase, type II. Homoser	96.52
COG1718	268	RIO1 Serine/threonine protein kinase involved in c	96.52
PF06293	206	Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family;	96.49
PRK05231	319	homoserine kinase; Provisional	96.45
TIGR00938	307	thrB_alt homoserine kinase, Neisseria type. Homose	96.04
TIGR01767	370	MTRK 5-methylthioribose kinase. This enzyme is inv	96.02
PF03881	288	Fructosamin_kin: Fructosamine kinase; InterPro: IP	95.91
cd05155	235	APH_ChoK_like_1 Uncharacterized bacterial proteins	95.89
PRK12396	409	5-methylribose kinase; Reviewed	95.86
PLN02756	418	S-methyl-5-thioribose kinase	94.97
PLN02236	344	choline kinase	94.58
COG3001	286	Uncharacterized protein conserved in bacteria [Fun	94.49
cd05156	302	ChoK_euk Choline Kinase (ChoK) in eukaryotes. The	94.27
PF03109	119	ABC1: ABC1 family; InterPro: IPR004147 This entry	93.92
PRK10593	297	hypothetical protein; Provisional	93.18
PF01102	122	Glycophorin_A: Glycophorin A; InterPro: IPR001195	93.14
KOG0576	829	consensus Mitogen-activated protein kinase kinase	92.97
KOG1033	516	consensus eIF-2alpha kinase PEK/EIF2AK3 [Translati	91.95
cd05152	276	MPH2' Macrolide 2'-Phosphotransferase (MPH2'). MPH	91.95
PF08693	40	SKG6: Transmembrane alpha-helix domain; InterPro:	91.72
PLN02421	330	phosphotransferase, alcohol group as acceptor/kina	91.38
KOG2270	520	consensus Serine/threonine protein kinase involved	91.0
KOG2268	465	consensus Serine/threonine protein kinase [Signal	90.75
KOG0606	1205	consensus Microtubule-associated serine/threonine	90.52
COG3173	321	Predicted aminoglycoside phosphotransferase [Gener	90.11
TIGR02906	313	spore_CotS spore coat protein, CotS family. Member	89.92
PF01034	64	Syndecan: Syndecan domain; InterPro: IPR001050 The	88.76
PF08114	43	PMP1_2: ATPase proteolipid family; InterPro: IPR01	87.55
PF02958	294	EcKinase: Ecdysteroid kinase; InterPro: IPR004119	87.25
PRK10271	188	thiK thiamine kinase; Provisional	86.83
COG5072	488	ALK1 Serine/threonine kinase of the haspin family	86.59
KOG4258	1025	consensus Insulin/growth factor receptor (contains	86.56
PF01633	211	Choline_kinase: Choline/ethanolamine kinase; Inter	86.14
PRK11768	325	serine/threonine protein kinase; Provisional	85.78
TIGR02904	309	spore_ysxE spore coat protein YsxE. Members of thi	85.06
PF01102	122	Glycophorin_A: Glycophorin A; InterPro: IPR001195	82.03
PHA00451	362	protein kinase	81.91

>KOG1187 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=6.5e-32  Score=232.06  Aligned_cols=167  Identities=42%  Similarity=0.687  Sum_probs=144.2

Q ss_pred             CccccChHHHHhhcCCCcccceeeeeCceEEEEEEECCCcEEEEEEecccChhHHHHHHHHHHHHHhCCCCcccceeeEE
Q 047066           90 TAKIFTAGELKIATNNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCC  169 (256)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~  169 (256)
                      ....|+..++..++++|...+.||+|+||.||+|...++..||||++.........+|.+|+.++.+++|||+|+|+|||
T Consensus        61 ~~~~fs~~el~~AT~~Fs~~~~ig~Ggfg~VYkG~l~~~~~vAVK~~~~~~~~~~~eF~~Ei~~ls~l~H~Nlv~LlGyC  140 (361)
T KOG1187|consen   61 PLRSFSYDELRKATNNFSESNLIGEGGFGTVYKGVLSDGTVVAVKRLSSNSGQGEREFLNEVEILSRLRHPNLVKLLGYC  140 (361)
T ss_pred             CcceeeHHHHHHHHhCCchhcceecCCCeEEEEEEECCCCEEEEEEecCCCCcchhHHHHHHHHHhcCCCcCcccEEEEE
Confidence            56779999999999999999999999999999999988899999987665433135599999999999999999999999


Q ss_pred             EECC-EEEEEEecCCCCCC------------CHHHHHHHHHHHH----------------hccCCCcEEEcCCCcEEEEe
Q 047066          170 LETE-VPLLVNEFVKLPTI------------SWEVRIRIAAETA----------------EDIKSINILLDDNYTTKVCD  220 (256)
Q Consensus       170 ~~~~-~~~lv~e~~~~~~l------------~~~~~~~~~~~i~----------------rdlk~~NiLi~~~~~~ki~D  220 (256)
                      .+.+ ...+|+||+.+|+|            +|..+++|+.++|                |||||+|||+|+++++||+|
T Consensus       141 ~e~~~~~~LVYEym~nGsL~d~L~~~~~~~L~W~~R~kIa~g~A~gL~yLH~~~~~~iiHrDiKssNILLD~~~~aKlsD  220 (361)
T KOG1187|consen  141 LEGGEHRLLVYEYMPNGSLEDHLHGKKGEPLDWETRLKIALGAARGLAYLHEGCPPPIIHRDIKSSNILLDEDFNAKLSD  220 (361)
T ss_pred             ecCCceEEEEEEccCCCCHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHccCCCCCEecCCCCHHHeeECCCCCEEccC
Confidence            9988 59999999988654            8999999999988                59999999999999999999


Q ss_pred             cCCceecCCCCceeeeeeeecccc----cccccCCCCCCC
Q 047066          221 FGASKLVPIDETQLSTMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       221 FGla~~~~~~~~~~~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      ||+|+..........+...||.+|    |..+|+.|+|||
T Consensus       221 FGLa~~~~~~~~~~~~~~~gt~gY~~PEy~~~g~lt~KsD  260 (361)
T KOG1187|consen  221 FGLAKLGPEGDTSVSTTVMGTFGYLAPEYASTGKLTEKSD  260 (361)
T ss_pred             ccCcccCCccccceeeecCCCCccCChhhhccCCcCcccc
Confidence            999976543122222211699999    888899999998

>KOG0595 consensus Serine/threonine-protein kinase involved in autophagy [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=99.97  E-value=1.3e-30  Score=217.26  Aligned_cols=151  Identities=24%  Similarity=0.398  Sum_probs=127.8

Q ss_pred             CCCcccceeeeeCceEEEEEEEC-CCcEEEEEEeccc--ChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEe
Q 047066          104 NNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIV--YQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNE  180 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e  180 (256)
                      .+|.+.+.||+|+||.||+|+++ ++..||||.+...  .+..++....|+.+|+.++|||||++++++..++.+|+|||
T Consensus        10 ~~y~~~~~iG~GsfavVykg~h~~~~~~VAIK~i~~~~l~~k~~e~L~~Ei~iLkel~H~nIV~l~d~~~~~~~i~lVME   89 (429)
T KOG0595|consen   10 GDYELSREIGSGSFAVVYKGRHKKSGTEVAIKCIAKKKLNKKLVELLLSEIKILKELKHPNIVRLLDCIEDDDFIYLVME   89 (429)
T ss_pred             ccceehhhccCcceEEEEEeEeccCCceEEeeeehhhccCHHHHHHHHHHHHHHHhcCCcceeeEEEEEecCCeEEEEEE
Confidence            57888889999999999999975 6889999988654  56677889999999999999999999999999999999999


Q ss_pred             cCCCCCCCH----------HHHHHHHHHHH-------------hccCCCcEEEcCC------CcEEEEecCCceecCCCC
Q 047066          181 FVKLPTISW----------EVRIRIAAETA-------------EDIKSINILLDDN------YTTKVCDFGASKLVPIDE  231 (256)
Q Consensus       181 ~~~~~~l~~----------~~~~~~~~~i~-------------rdlk~~NiLi~~~------~~~ki~DFGla~~~~~~~  231 (256)
                      ||++|+|+.          ....+...|+|             |||||.|||++.+      -.+||+|||+|+.+.+. 
T Consensus        90 yC~gGDLs~yi~~~~~l~e~t~r~Fm~QLA~alq~L~~~~IiHRDLKPQNiLLs~~~~~~~~~~LKIADFGfAR~L~~~-  168 (429)
T KOG0595|consen   90 YCNGGDLSDYIRRRGRLPEATARHFMQQLASALQFLHENNIIHRDLKPQNILLSTTARNDTSPVLKIADFGFARFLQPG-  168 (429)
T ss_pred             eCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeeeccCCcceEEeccCCCCCCCceEEecccchhhhCCch-
Confidence            999987643          33445555555             7999999999765      46899999999998743 


Q ss_pred             ceeeeeeeecccc----cccccCCCCCCC
Q 047066          232 TQLSTMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       232 ~~~~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                       ....++||+|-|    .++.++|+.|+|
T Consensus       169 -~~a~tlcGSplYMAPEV~~~~~YdAKAD  196 (429)
T KOG0595|consen  169 -SMAETLCGSPLYMAPEVIMSQQYDAKAD  196 (429)
T ss_pred             -hHHHHhhCCccccCHHHHHhccccchhh
Confidence             234568999999    667999999988

>KOG0197 consensus Tyrosine kinases [Signal transduction mechanisms]

Probab=99.96  E-value=6.1e-30  Score=219.79  Aligned_cols=162  Identities=22%  Similarity=0.389  Sum_probs=135.0

Q ss_pred             cChHHHHhhcCCCcccceeeeeCceEEEEEEECCCcEEEEEEecccChhHHHHHHHHHHHHHhCCCCcccceeeEEEECC
Q 047066           94 FTAGELKIATNNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLETE  173 (256)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~  173 (256)
                      +..+.|++.++.+.+.+.||+|.||.||.|.++....||+|.++...- ..++|.+|+++|++|+|+|||+++|+|..+.
T Consensus       196 ~~~d~wei~r~~l~l~~~LG~G~FG~V~~g~~~~~~~vavk~ik~~~m-~~~~f~~Ea~iMk~L~H~~lV~l~gV~~~~~  274 (468)
T KOG0197|consen  196 LARDPWEIPREELKLIRELGSGQFGEVWLGKWNGSTKVAVKTIKEGSM-SPEAFLREAQIMKKLRHEKLVKLYGVCTKQE  274 (468)
T ss_pred             cccCCeeecHHHHHHHHHhcCCccceEEEEEEcCCCcccceEEecccc-ChhHHHHHHHHHHhCcccCeEEEEEEEecCC
Confidence            336778889999999999999999999999998888999999876432 2377899999999999999999999999988


Q ss_pred             EEEEEEecCCCCCC------------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecC
Q 047066          174 VPLLVNEFVKLPTI------------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVP  228 (256)
Q Consensus       174 ~~~lv~e~~~~~~l------------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~  228 (256)
                      .++||||||+.|+|            ...+.+.++.|||             |||.++||||+++..|||+|||||+.+.
T Consensus       275 piyIVtE~m~~GsLl~yLr~~~~~~l~~~~Ll~~a~qIaeGM~YLes~~~IHRDLAARNiLV~~~~~vKIsDFGLAr~~~  354 (468)
T KOG0197|consen  275 PIYIVTEYMPKGSLLDYLRTREGGLLNLPQLLDFAAQIAEGMAYLESKNYIHRDLAARNILVDEDLVVKISDFGLARLIG  354 (468)
T ss_pred             ceEEEEEecccCcHHHHhhhcCCCccchHHHHHHHHHHHHHHHHHHhCCccchhhhhhheeeccCceEEEcccccccccC
Confidence            99999999988775            3455567777776             7999999999999999999999999665


Q ss_pred             CCCceeeeeeeecccc----cccccCCCCCCC
Q 047066          229 IDETQLSTMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       229 ~~~~~~~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      ++.........-...|    .+..+.||.|||
T Consensus       355 d~~Y~~~~~~kfPIkWtAPEa~~~~~FS~kSD  386 (468)
T KOG0197|consen  355 DDEYTASEGGKFPIKWTAPEALNYGKFSSKSD  386 (468)
T ss_pred             CCceeecCCCCCCceecCHHHHhhCCcccccc
Confidence            5544444333233333    889999999998

>KOG1026 consensus Nerve growth factor receptor TRKA and related tyrosine kinases [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=1.2e-28  Score=221.80  Aligned_cols=161  Identities=22%  Similarity=0.353  Sum_probs=137.1

Q ss_pred             hHHHHhhcCCCcccceeeeeCceEEEEEEEC------CCcEEEEEEecccChh-HHHHHHHHHHHHHhCCCCcccceeeE
Q 047066           96 AGELKIATNNYAYDRMIGRGGYGTVFLGSLS------DNKAIAIKKSRIVYQS-QIEQCINKVVVLSQINHRNVVGLLGC  168 (256)
Q Consensus        96 ~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~------~~~~vavK~~~~~~~~-~~~~~~~E~~~l~~l~h~niv~l~~~  168 (256)
                      ....++++.+..+.+.||+|+||+||+|+..      +...||||.++..... .+.+|.+|++++..++|||||+|+|.
T Consensus       478 ~~~~~i~r~~i~~~~eLGegaFGkVf~a~~~~l~p~~~~~lVAVK~LKd~a~~~~~~dF~REaeLla~l~H~nIVrLlGV  557 (774)
T KOG1026|consen  478 LKVLEIPRSDIVFKEELGEGAFGKVFLAEAYGLLPGQDEQLVAVKALKDKAENQARQDFRREAELLAELQHPNIVRLLGV  557 (774)
T ss_pred             cceeEechhheeehhhhcCchhhhhhhhhccCCCCCccceehhHhhhcccccHHHHHHHHHHHHHHHhccCCCeEEEEEE
Confidence            3445677888889999999999999999842      3568999999876644 77899999999999999999999999


Q ss_pred             EEECCEEEEEEecCCCCC------------------------CCHHHHHHHHHHHH-------------hccCCCcEEEc
Q 047066          169 CLETEVPLLVNEFVKLPT------------------------ISWEVRIRIAAETA-------------EDIKSINILLD  211 (256)
Q Consensus       169 ~~~~~~~~lv~e~~~~~~------------------------l~~~~~~~~~~~i~-------------rdlk~~NiLi~  211 (256)
                      |..++..++|+|||..|+                        |+..+.++++.|||             |||.++|+||+
T Consensus       558 C~~~~P~~MvFEYm~~GDL~eFLra~sP~a~~~~~g~~~~~~L~~~q~L~iA~QIAaGM~YLs~~~FVHRDLATRNCLVg  637 (774)
T KOG1026|consen  558 CREGDPLCMVFEYMDHGDLHEFLRARSPKADKLASGQDTPPPLSTSQFLHIATQIAAGMEYLSSHHFVHRDLATRNCLVG  637 (774)
T ss_pred             EccCCeeEEEEEecccccHHHHHHhhCCccccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCcccccchhhhhceec
Confidence            999999999999997644                        56677889999988             69999999999


Q ss_pred             CCCcEEEEecCCceecCCCCceeee-eeeecccc----cccccCCCCCCC
Q 047066          212 DNYTTKVCDFGASKLVPIDETQLST-MVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       212 ~~~~~ki~DFGla~~~~~~~~~~~~-~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      ++..|||+||||+|.+...+.+... ...=..+|    .+..++||++||
T Consensus       638 e~l~VKIsDfGLsRdiYssDYYk~~~~t~lPIRWMppEsIly~kFTteSD  687 (774)
T KOG1026|consen  638 ENLVVKISDFGLSRDIYSSDYYKVRGNTLLPIRWMPPESILYGKFTTESD  687 (774)
T ss_pred             cceEEEecccccchhhhhhhhhcccCCceeeeecCCHHHhhcCcccchhh
Confidence            9999999999999998776666543 22245566    888999999998

>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]

Probab=99.95  E-value=2.7e-28  Score=217.00  Aligned_cols=157  Identities=22%  Similarity=0.408  Sum_probs=129.2

Q ss_pred             HhhcCCCcccceeeeeCceEEEEEEEC----CCcEEEEEEecccC-hhHHHHHHHHHHHHHhCCCCcccceeeEEEECCE
Q 047066          100 KIATNNYAYDRMIGRGGYGTVFLGSLS----DNKAIAIKKSRIVY-QSQIEQCINKVVVLSQINHRNVVGLLGCCLETEV  174 (256)
Q Consensus       100 ~~~~~~~~~~~~lg~G~~g~V~~~~~~----~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~  174 (256)
                      ++..+...+.++||.|.||+|++|+++    ....||||.++... +.++.+|+.|+.||.+++||||++|.|+......
T Consensus       625 EId~s~i~Ie~VIGaGEFGEVc~GrLk~pgkre~~VAIKTLK~GytekqrrdFL~EAsIMGQFdHPNIIrLEGVVTks~P  704 (996)
T KOG0196|consen  625 EIDPSCVKIEKVIGAGEFGEVCSGRLKLPGKREITVAIKTLKAGYTEKQRRDFLSEASIMGQFDHPNIIRLEGVVTKSKP  704 (996)
T ss_pred             hcChhheEEEEEEecccccceecccccCCCCcceeEEEeeeccCccHHHHhhhhhhhhhcccCCCCcEEEEEEEEecCce
Confidence            455567788899999999999999975    24589999998765 5667899999999999999999999999999999


Q ss_pred             EEEEEecCCCCCCCHHHH-----------HHHHHH-------------HHhccCCCcEEEcCCCcEEEEecCCceecCCC
Q 047066          175 PLLVNEFVKLPTISWEVR-----------IRIAAE-------------TAEDIKSINILLDDNYTTKVCDFGASKLVPID  230 (256)
Q Consensus       175 ~~lv~e~~~~~~l~~~~~-----------~~~~~~-------------i~rdlk~~NiLi~~~~~~ki~DFGla~~~~~~  230 (256)
                      .+|++|||++|+|+...+           ..+..+             +||||.++|||++.+..+|++||||+|.+.++
T Consensus       705 vMIiTEyMENGsLDsFLR~~DGqftviQLVgMLrGIAsGMkYLsdm~YVHRDLAARNILVNsnLvCKVsDFGLSRvledd  784 (996)
T KOG0196|consen  705 VMIITEYMENGSLDSFLRQNDGQFTVIQLVGMLRGIASGMKYLSDMNYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDD  784 (996)
T ss_pred             eEEEhhhhhCCcHHHHHhhcCCceEeehHHHHHHHHHHHhHHHhhcCchhhhhhhhheeeccceEEEeccccceeecccC
Confidence            999999999998865443           334444             44899999999999999999999999998766


Q ss_pred             Cceeeeeeeec--ccc----cccccCCCCCCC
Q 047066          231 ETQLSTMVQGT--LGY----YLHTSQGTLNKE  256 (256)
Q Consensus       231 ~~~~~~~~~Gt--~~y----~~~~~~~t~ksD  256 (256)
                      .....+..-|-  .+|    ++...+||.+||
T Consensus       785 ~~~~ytt~GGKIPiRWTAPEAIa~RKFTsASD  816 (996)
T KOG0196|consen  785 PEAAYTTLGGKIPIRWTAPEAIAYRKFTSASD  816 (996)
T ss_pred             CCccccccCCccceeecChhHhhhcccCchhh
Confidence            54444433333  345    788899999998

>KOG0591 consensus NIMA (never in mitosis)-related G2-specific serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.95  E-value=1e-29  Score=203.04  Aligned_cols=153  Identities=27%  Similarity=0.429  Sum_probs=125.5

Q ss_pred             cCCCcccceeeeeCceEEEEEE-ECCCcEEEEEEecc--cChhHHHHHHHHHHHHHhCCCCcccceee-EEEECCE-EEE
Q 047066          103 TNNYAYDRMIGRGGYGTVFLGS-LSDNKAIAIKKSRI--VYQSQIEQCINKVVVLSQINHRNVVGLLG-CCLETEV-PLL  177 (256)
Q Consensus       103 ~~~~~~~~~lg~G~~g~V~~~~-~~~~~~vavK~~~~--~~~~~~~~~~~E~~~l~~l~h~niv~l~~-~~~~~~~-~~l  177 (256)
                      ..+|+++++||+|+||+||++. ..+|..+|.|.++-  .+....++...|+.+|++|+|||||++++ .+.+.+. +++
T Consensus        18 l~~y~Il~~IG~GsFg~vykv~~~~~g~l~a~K~i~f~~md~k~rq~~v~Ei~lLkQL~HpNIVqYy~~~f~~~~evlni   97 (375)
T KOG0591|consen   18 LADYQILKKIGRGSFGEVYKVQCLLDGKLVALKKIQFGMMDAKARQDCVKEISLLKQLNHPNIVQYYAHSFIEDNEVLNI   97 (375)
T ss_pred             HHHHHHHHHHcCCcchheEEeeeccCcchhhhhhcchhhccHHHHHHHHHHHHHHHhcCCchHHHHHHHhhhccchhhHH
Confidence            3568889999999999999998 45899999998762  34566688999999999999999999999 5555555 899


Q ss_pred             EEecCCCCCCCHHH--------------HHHHHHH-----------------HHhccCCCcEEEcCCCcEEEEecCCcee
Q 047066          178 VNEFVKLPTISWEV--------------RIRIAAE-----------------TAEDIKSINILLDDNYTTKVCDFGASKL  226 (256)
Q Consensus       178 v~e~~~~~~l~~~~--------------~~~~~~~-----------------i~rdlk~~NiLi~~~~~~ki~DFGla~~  226 (256)
                      +||||..|.|+...              ..++..|                 +||||||.||+++.+|.+||+||||++.
T Consensus        98 vmE~c~~GDLsqmIk~~K~qkr~ipE~~Vwk~f~QL~~AL~~cH~~~~r~~VmHRDIKPaNIFl~~~gvvKLGDfGL~r~  177 (375)
T KOG0591|consen   98 VMELCDAGDLSQMIKHFKKQKRLIPEKTVWKYFVQLCRALYHCHSKIPRGTVMHRDIKPANIFLTANGVVKLGDFGLGRF  177 (375)
T ss_pred             HHHhhcccCHHHHHHHHHhccccCchHHHHHHHHHHHHHHHHHhccccccceeeccCcchheEEcCCCceeeccchhHhH
Confidence            99999998874322              2233333                 3479999999999999999999999999


Q ss_pred             cCCCCceeeeeeeecccc----cccccCCCCCCC
Q 047066          227 VPIDETQLSTMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       227 ~~~~~~~~~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      +..+.+ ..++.+|||.|    .+++..|+.|||
T Consensus       178 l~s~~t-fA~S~VGTPyYMSPE~i~~~~Y~~kSD  210 (375)
T KOG0591|consen  178 LSSKTT-FAHSLVGTPYYMSPERIHESGYNFKSD  210 (375)
T ss_pred             hcchhH-HHHhhcCCCcccCHHHHhcCCCCcchh
Confidence            876544 34556799999    888999999998

>KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning]

Probab=99.95  E-value=3.7e-28  Score=202.79  Aligned_cols=141  Identities=24%  Similarity=0.335  Sum_probs=114.4

Q ss_pred             hcCCCcccceeeeeCceEEEEEEE-CCCcEEEEEEecccCh-------hHHHHHHHHHHHHHhCCCCcccceeeEEEECC
Q 047066          102 ATNNYAYDRMIGRGGYGTVFLGSL-SDNKAIAIKKSRIVYQ-------SQIEQCINKVVVLSQINHRNVVGLLGCCLETE  173 (256)
Q Consensus       102 ~~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vavK~~~~~~~-------~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~  173 (256)
                      ..+.|.+.+.||+|+||.|-+|.. ++++.||||+++....       .......+|+++|++|+|||||++++++..++
T Consensus       170 ~~d~yii~~~LGsGafg~Vkla~e~~tgk~vAiKIi~krk~~~~s~~~~~~~~v~~EieILkkL~HP~IV~~~d~f~~~d  249 (475)
T KOG0615|consen  170 FNDYYIISKTLGSGAFGLVKLAYEKKTGKQVAIKIINKRKSTGCSRAIAKTRDVQNEIEILKKLSHPNIVRIKDFFEVPD  249 (475)
T ss_pred             hcceeEeeeeecCCceeEEEEEEEcccCcEEEeeeeehhhcccccccccchhhhHHHHHHHHhcCCCCEEEEeeeeecCC
Confidence            346678889999999999999985 4799999998854321       12234679999999999999999999999999


Q ss_pred             EEEEEEecCCCCCCCH-----------------------HHHHHHHHHHHhccCCCcEEEcCC---CcEEEEecCCceec
Q 047066          174 VPLLVNEFVKLPTISW-----------------------EVRIRIAAETAEDIKSINILLDDN---YTTKVCDFGASKLV  227 (256)
Q Consensus       174 ~~~lv~e~~~~~~l~~-----------------------~~~~~~~~~i~rdlk~~NiLi~~~---~~~ki~DFGla~~~  227 (256)
                      ..||||||+++|.|-.                       ...+|-...+||||||+|||+..+   ..+||+|||+|+..
T Consensus       250 s~YmVlE~v~GGeLfd~vv~nk~l~ed~~K~~f~Qll~avkYLH~~GI~HRDiKPeNILl~~~~e~~llKItDFGlAK~~  329 (475)
T KOG0615|consen  250 SSYMVLEYVEGGELFDKVVANKYLREDLGKLLFKQLLTAVKYLHSQGIIHRDIKPENILLSNDAEDCLLKITDFGLAKVS  329 (475)
T ss_pred             ceEEEEEEecCccHHHHHHhccccccchhHHHHHHHHHHHHHHHHcCcccccCCcceEEeccCCcceEEEecccchhhcc
Confidence            9999999999988621                       112333344569999999999766   78999999999987


Q ss_pred             CCCCceeeeeeeecccc
Q 047066          228 PIDETQLSTMVQGTLGY  244 (256)
Q Consensus       228 ~~~~~~~~~~~~Gt~~y  244 (256)
                      .  +...+.+.||||.|
T Consensus       330 g--~~sfm~TlCGTpsY  344 (475)
T KOG0615|consen  330 G--EGSFMKTLCGTPSY  344 (475)
T ss_pred             c--cceehhhhcCCccc
Confidence            5  45667889999999

>KOG0581 consensus Mitogen-activated protein kinase kinase (MAP2K) [Signal transduction mechanisms]

Probab=99.95  E-value=3e-27  Score=195.35  Aligned_cols=152  Identities=20%  Similarity=0.295  Sum_probs=127.1

Q ss_pred             hcCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEeccc-ChhHHHHHHHHHHHHHhCCCCcccceeeEEEECC-EEEEE
Q 047066          102 ATNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIV-YQSQIEQCINKVVVLSQINHRNVVGLLGCCLETE-VPLLV  178 (256)
Q Consensus       102 ~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~-~~~lv  178 (256)
                      ..++++..+.||+|+.|.||+++++ +++.+|+|.+... ++...+++.+|++++++.+||+||.++|.|.... ...++
T Consensus        77 ~~~dle~~~~lG~G~gG~V~kv~Hk~t~~i~AlK~I~~~~~~~~~~Qi~rEl~il~~~~spyIV~~ygaF~~~~~~isI~  156 (364)
T KOG0581|consen   77 SLSDLERLGVLGSGNGGTVYKVRHKPTGKIYALKVILLNIDPALQKQILRELEILRSCQSPYIVGFYGAFYSNGEEISIC  156 (364)
T ss_pred             CHHHhhhhhhcccCCCcEEEEEEEcCCCeEEEEEeecccCCHHHHHHHHHHHHHHhhCCCCCeeeEeEEEEeCCceEEee
Confidence            3346677789999999999999986 6889999998543 4566789999999999999999999999999988 59999


Q ss_pred             EecCCCCCCCHHHH----------HHHHH--------------HHHhccCCCcEEEcCCCcEEEEecCCceecCCCCcee
Q 047066          179 NEFVKLPTISWEVR----------IRIAA--------------ETAEDIKSINILLDDNYTTKVCDFGASKLVPIDETQL  234 (256)
Q Consensus       179 ~e~~~~~~l~~~~~----------~~~~~--------------~i~rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~  234 (256)
                      ||||++|+|.....          -.++.              .|||||||+|+|++..|++||+|||.++.+.+.   .
T Consensus       157 mEYMDgGSLd~~~k~~g~i~E~~L~~ia~~VL~GL~YLh~~~~IIHRDIKPsNlLvNskGeVKicDFGVS~~lvnS---~  233 (364)
T KOG0581|consen  157 MEYMDGGSLDDILKRVGRIPEPVLGKIARAVLRGLSYLHEERKIIHRDIKPSNLLVNSKGEVKICDFGVSGILVNS---I  233 (364)
T ss_pred             hhhcCCCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhccCeeeccCCHHHeeeccCCCEEeccccccHHhhhh---h
Confidence            99999999753332          23333              255899999999999999999999999988654   3


Q ss_pred             eeeeeecccc----cccccCCCCCCC
Q 047066          235 STMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       235 ~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      ..+.+||..|    .+.++.|+.++|
T Consensus       234 a~tfvGT~~YMsPERi~g~~Ys~~sD  259 (364)
T KOG0581|consen  234 ANTFVGTSAYMSPERISGESYSVKSD  259 (364)
T ss_pred             cccccccccccChhhhcCCcCCcccc
Confidence            4556799999    788889999998

>KOG0598 consensus Ribosomal protein S6 kinase and related proteins [General function prediction only; Signal transduction mechanisms]

Probab=99.95  E-value=2.5e-27  Score=195.71  Aligned_cols=153  Identities=23%  Similarity=0.275  Sum_probs=124.6

Q ss_pred             cCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEeccc---ChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEE
Q 047066          103 TNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIV---YQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLV  178 (256)
Q Consensus       103 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv  178 (256)
                      .++|+++++||+|+||+|+.++.+ +++.+|+|.++..   ...+.++..+|..+|.+++||+||++.-.|++.+.+|+|
T Consensus        24 ~~dF~~lkviGkG~fGkV~~Vrk~dt~kiYAmKvl~K~~iv~~~e~~~~~~Er~IL~~v~hPFiv~l~ysFQt~~kLylV  103 (357)
T KOG0598|consen   24 PDDFEILKVIGKGSFGKVFQVRKKDTGKIYAMKVLKKKKIVEKKEVRHTKAERNILSKIKHPFIVKLIYSFQTEEKLYLV  103 (357)
T ss_pred             hhheeeeeeeeccCCceEEEEEEcccCceeehhhhhhhHhhhhhhHHHHHHHHHHHHhCCCCcEeeeEEecccCCeEEEE
Confidence            468999999999999999999965 5889999987543   345678899999999999999999999999999999999


Q ss_pred             EecCCCCCCCHHH----------HHHHH-------------HHHHhccCCCcEEEcCCCcEEEEecCCceecCCCCceee
Q 047066          179 NEFVKLPTISWEV----------RIRIA-------------AETAEDIKSINILLDDNYTTKVCDFGASKLVPIDETQLS  235 (256)
Q Consensus       179 ~e~~~~~~l~~~~----------~~~~~-------------~~i~rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~  235 (256)
                      +||+.||.|-+..          ....+             ..|.|||||+|||+|++|+++|+|||||+..-.... ..
T Consensus       104 ld~~~GGeLf~hL~~eg~F~E~~arfYlaEi~lAL~~LH~~gIiyRDlKPENILLd~~GHi~LtDFgL~k~~~~~~~-~t  182 (357)
T KOG0598|consen  104 LDYLNGGELFYHLQREGRFSEDRARFYLAEIVLALGYLHSKGIIYRDLKPENILLDEQGHIKLTDFGLCKEDLKDGD-AT  182 (357)
T ss_pred             EeccCCccHHHHHHhcCCcchhHHHHHHHHHHHHHHHHHhCCeeeccCCHHHeeecCCCcEEEeccccchhcccCCC-cc
Confidence            9999998873322          11122             223389999999999999999999999996543322 34


Q ss_pred             eeeeecccc----cccccCCCCCCC
Q 047066          236 TMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       236 ~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      .+.|||+.|    .+....++..+|
T Consensus       183 ~tfcGT~eYmAPEil~~~gy~~~vD  207 (357)
T KOG0598|consen  183 RTFCGTPEYMAPEILLGKGYDKAVD  207 (357)
T ss_pred             ccccCCccccChHHHhcCCCCcccc
Confidence            457999999    666778888877

>KOG0575 consensus Polo-like serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.94  E-value=1.6e-26  Score=201.23  Aligned_cols=140  Identities=20%  Similarity=0.341  Sum_probs=121.0

Q ss_pred             CCCcccceeeeeCceEEEEEEE-CCCcEEEEEEeccc---ChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEE
Q 047066          104 NNYAYDRMIGRGGYGTVFLGSL-SDNKAIAIKKSRIV---YQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVN  179 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~V~~~~~-~~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~  179 (256)
                      ..|+..++||+|+|+.+|.++. ..|..||+|.+...   .....+...+|+++.+.|+|||||+++++|++.+..|+|.
T Consensus        18 ~~Y~~g~~LGkGgFA~cYe~~~~~tge~~A~KvVpk~~l~k~~~reKv~~EIeIHr~L~HpnIV~f~~~FEDs~nVYivL   97 (592)
T KOG0575|consen   18 KRYKRGRFLGKGGFARCYEARDLDTGEVVAVKVVPKKLLKKPKQREKVLNEIEIHRSLKHPNIVQFYHFFEDSNNVYIVL   97 (592)
T ss_pred             ceeeeeeeeccCcceEEEEEEEcCCCcEEEEEEeehHHhcCcchHHHHHHHHHHHHhcCCCcEEeeeeEeecCCceEEEE
Confidence            5799999999999999999997 68999999988642   3556688999999999999999999999999999999999


Q ss_pred             ecCCCCCC----------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceeee
Q 047066          180 EFVKLPTI----------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLST  236 (256)
Q Consensus       180 e~~~~~~l----------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~  236 (256)
                      |+|.+++|          ++.....+..||.             ||||..|++++++.++||+|||||..+..+.... .
T Consensus        98 ELC~~~sL~el~Krrk~ltEpEary~l~QIv~GlkYLH~~~IiHRDLKLGNlfL~~~~~VKIgDFGLAt~le~~~Erk-~  176 (592)
T KOG0575|consen   98 ELCHRGSLMELLKRRKPLTEPEARYFLRQIVEGLKYLHSLGIIHRDLKLGNLFLNENMNVKIGDFGLATQLEYDGERK-K  176 (592)
T ss_pred             EecCCccHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHhcCceecccchhheeecCcCcEEecccceeeeecCccccc-c
Confidence            99999775          4444455555544             8999999999999999999999999998665543 4


Q ss_pred             eeeecccc
Q 047066          237 MVQGTLGY  244 (256)
Q Consensus       237 ~~~Gt~~y  244 (256)
                      +.||||.|
T Consensus       177 TlCGTPNY  184 (592)
T KOG0575|consen  177 TLCGTPNY  184 (592)
T ss_pred             eecCCCcc
Confidence            57899999

>KOG0600 consensus Cdc2-related protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.94  E-value=1.1e-26  Score=198.37  Aligned_cols=155  Identities=23%  Similarity=0.288  Sum_probs=128.1

Q ss_pred             hcCCCcccceeeeeCceEEEEEEE-CCCcEEEEEEecccC--hhHHHHHHHHHHHHHhCCCCcccceeeEEEEC--CEEE
Q 047066          102 ATNNYAYDRMIGRGGYGTVFLGSL-SDNKAIAIKKSRIVY--QSQIEQCINKVVVLSQINHRNVVGLLGCCLET--EVPL  176 (256)
Q Consensus       102 ~~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~--~~~~  176 (256)
                      ..+.|+.++.||+|.||.||+++. .+|+.||+|+++-..  +....-..+|+.+|++|+||||++|.+.....  ..+|
T Consensus       115 ~~~~feki~kIGeGTyg~VYkAr~~~tgkivALKKvr~d~~~~~~~~t~~REI~ILr~l~HpNIikL~eivt~~~~~siY  194 (560)
T KOG0600|consen  115 RADSFEKIEKIGEGTYGQVYKARDLETGKIVALKKVRFDNEKEGFPITAIREIKILRRLDHPNIIKLEEIVTSKLSGSIY  194 (560)
T ss_pred             chHHHHHHHHhcCcchhheeEeeecccCcEEEEEEeecccCCCcchHHHHHHHHHHHhcCCCcccceeeEEEecCCceEE
Confidence            345688889999999999999995 579999999886543  44556678999999999999999999998875  7899


Q ss_pred             EEEecCCCC----------CCCHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCce
Q 047066          177 LVNEFVKLP----------TISWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQ  233 (256)
Q Consensus       177 lv~e~~~~~----------~l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~  233 (256)
                      +|+|||++.          .++..+...++.|+.             ||||.+|||||.+|.+||+|||||+.+......
T Consensus       195 lVFeYMdhDL~GLl~~p~vkft~~qIKc~mkQLl~Gl~~cH~~gvlHRDIK~SNiLidn~G~LKiaDFGLAr~y~~~~~~  274 (560)
T KOG0600|consen  195 LVFEYMDHDLSGLLSSPGVKFTEPQIKCYMKQLLEGLEYCHSRGVLHRDIKGSNILIDNNGVLKIADFGLARFYTPSGSA  274 (560)
T ss_pred             EEEecccchhhhhhcCCCcccChHHHHHHHHHHHHHHHHHhhcCeeeccccccceEEcCCCCEEeccccceeeccCCCCc
Confidence            999999872          235555555555544             899999999999999999999999998777666


Q ss_pred             eeeeeeecccc-----cccccCCCCCCC
Q 047066          234 LSTMVQGTLGY-----YLHTSQGTLNKE  256 (256)
Q Consensus       234 ~~~~~~Gt~~y-----~~~~~~~t~ksD  256 (256)
                      ..|..+-|.||     .+....|+.+.|
T Consensus       275 ~~T~rVvTLWYRpPELLLG~t~Yg~aVD  302 (560)
T KOG0600|consen  275 PYTSRVVTLWYRPPELLLGATSYGTAVD  302 (560)
T ss_pred             ccccceEEeeccChHHhcCCccccccee
Confidence            67777899999     666777888776

>KOG0192 consensus Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs [Signal transduction mechanisms]

Probab=99.94  E-value=1.5e-26  Score=198.08  Aligned_cols=158  Identities=29%  Similarity=0.431  Sum_probs=126.1

Q ss_pred             HHHhhcCCCcccceeeeeCceEEEEEEECCCcEEEEEEecccC--hhHHHHHHHHHHHHHhCCCCcccceeeEEEECC-E
Q 047066           98 ELKIATNNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVY--QSQIEQCINKVVVLSQINHRNVVGLLGCCLETE-V  174 (256)
Q Consensus        98 ~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~-~  174 (256)
                      ++.+....+...+.+|+|+||+||+|.++....||+|.+...+  ....+.|.+|+.+|.+++|||||+++|+|.++. .
T Consensus        35 ~~~i~~~~l~~~~~iG~G~~g~V~~~~~~g~~~vavK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~f~G~~~~~~~~  114 (362)
T KOG0192|consen   35 EEEIDPDELPIEEVLGSGSFGTVYKGKWRGTDVVAVKIISDPDFDDESRKAFRREASLLSRLRHPNIVQFYGACTSPPGS  114 (362)
T ss_pred             ceecChHHhhhhhhcccCCceeEEEEEeCCceeEEEEEecchhcChHHHHHHHHHHHHHHhCCCCCeeeEEEEEcCCCCc
Confidence            3444445566667899999999999999655559999987543  222568999999999999999999999999887 7


Q ss_pred             EEEEEecCCCCCC------------CHHHHHHHHHHHH--------------hccCCCcEEEcCCC-cEEEEecCCceec
Q 047066          175 PLLVNEFVKLPTI------------SWEVRIRIAAETA--------------EDIKSINILLDDNY-TTKVCDFGASKLV  227 (256)
Q Consensus       175 ~~lv~e~~~~~~l------------~~~~~~~~~~~i~--------------rdlk~~NiLi~~~~-~~ki~DFGla~~~  227 (256)
                      .++||||+++|+|            ++..++.++.+||              |||||+|+|++.+. ++||+|||+++..
T Consensus       115 ~~iVtEy~~~GsL~~~l~~~~~~~l~~~~~l~~aldiArGm~YLH~~~~iIHrDLK~~NiLv~~~~~~~KI~DFGlsr~~  194 (362)
T KOG0192|consen  115 LCIVTEYMPGGSLSVLLHKKRKRKLPLKVRLRIALDIARGMEYLHSEGPIIHRDLKSDNILVDLKGKTLKIADFGLSREK  194 (362)
T ss_pred             eEEEEEeCCCCcHHHHHhhcccCCCCHHHHHHHHHHHHHHHHHHhcCCCeeecccChhhEEEcCCCCEEEECCCccceee
Confidence            9999999988775            5555667777666              59999999999997 9999999999986


Q ss_pred             CCCCceeeeeeeecccc----ccc--ccCCCCCCC
Q 047066          228 PIDETQLSTMVQGTLGY----YLH--TSQGTLNKE  256 (256)
Q Consensus       228 ~~~~~~~~~~~~Gt~~y----~~~--~~~~t~ksD  256 (256)
                      .... ...+...||+.|    .+.  ...||.|+|
T Consensus       195 ~~~~-~~~~~~~GT~~wMAPEv~~~~~~~~~~K~D  228 (362)
T KOG0192|consen  195 VISK-TSMTSVAGTYRWMAPEVLRGEKSPYTEKSD  228 (362)
T ss_pred             cccc-ccccCCCCCccccChhhhcCCCCcCCccch
Confidence            5432 223335799999    444  457999998

>KOG0616 consensus cAMP-dependent protein kinase catalytic subunit (PKA) [Signal transduction mechanisms]

Probab=99.94  E-value=2.6e-26  Score=184.63  Aligned_cols=149  Identities=26%  Similarity=0.282  Sum_probs=124.1

Q ss_pred             CCCcccceeeeeCceEEEEEEEC-CCcEEEEEEeccc---ChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEE
Q 047066          104 NNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIV---YQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVN  179 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~  179 (256)
                      ++|+..+.||.|+||+|.+++.+ +|.-+|+|.+...   ...+.++..+|..+|+.+.||+++++.+.|.+.+.+++||
T Consensus        44 ~dfe~~~tlGtGSFGrV~LVr~k~~g~yYAmKvL~k~~vVklKQveH~~nEk~vL~~v~~PFlv~l~~t~~d~~~lymvm  123 (355)
T KOG0616|consen   44 QDFERLKTLGTGSFGRVHLVREKHSGNYYAMKVLDKQKVVKLKQVEHTHNEKRVLKAVSHPFLVKLYGTFKDNSNLYMVM  123 (355)
T ss_pred             hhhhheeeeccCccceEEEEEEccCCceeehhhcCHHHHHHHHHHHHHhhHHHHHhhccCceeEEEEEeeccCCeEEEEE
Confidence            57888899999999999999976 5788999988643   3456688899999999999999999999999999999999


Q ss_pred             ecCCCCCCC----------HHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceeee
Q 047066          180 EFVKLPTIS----------WEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLST  236 (256)
Q Consensus       180 e~~~~~~l~----------~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~  236 (256)
                      ||.++|.+.          ......++.+|.             |||||+|||+|++|.+||+|||+|+.+...    .-
T Consensus       124 eyv~GGElFS~Lrk~~rF~e~~arFYAAeivlAleylH~~~iiYRDLKPENiLlD~~G~iKitDFGFAK~v~~r----T~  199 (355)
T KOG0616|consen  124 EYVPGGELFSYLRKSGRFSEPHARFYAAEIVLALEYLHSLDIIYRDLKPENLLLDQNGHIKITDFGFAKRVSGR----TW  199 (355)
T ss_pred             eccCCccHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHhcCeeeccCChHHeeeccCCcEEEEeccceEEecCc----EE
Confidence            999997763          344455555554             799999999999999999999999988643    44


Q ss_pred             eeeecccc----cccccCCCCCCC
Q 047066          237 MVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       237 ~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      +.||||.|    .+.+..+..++|
T Consensus       200 TlCGTPeYLAPEii~sk~ynkavD  223 (355)
T KOG0616|consen  200 TLCGTPEYLAPEIIQSKGYNKAVD  223 (355)
T ss_pred             EecCCccccChHHhhcCCCCcchh
Confidence            68999999    555666665555

>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]

Probab=99.93  E-value=6.2e-26  Score=196.64  Aligned_cols=158  Identities=20%  Similarity=0.369  Sum_probs=132.7

Q ss_pred             HHhhcCCCcccceeeeeCceEEEEEEECCCcEEEEEEecccCh-hHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEE
Q 047066           99 LKIATNNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQ-SQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLL  177 (256)
Q Consensus        99 ~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~l  177 (256)
                      .+++++.+.+.+.||+|.||+|.+|....+..||||+++.... ..+.+|.+|+.+|.+|+||||+.++|+|..++.+++
T Consensus       533 ~EfPRs~L~~~ekiGeGqFGEVhLCeveg~lkVAVK~Lr~~a~~~~r~~F~kEIkiLsqLkhPNIveLvGVC~~DePicm  612 (807)
T KOG1094|consen  533 VEFPRSRLRFKEKIGEGQFGEVHLCEVEGPLKVAVKILRPDATKNARNDFLKEIKILSRLKHPNIVELLGVCVQDDPLCM  612 (807)
T ss_pred             hhcchhheehhhhhcCcccceeEEEEecCceEEEEeecCcccchhHHHHHHHHHHHHhccCCCCeeEEEeeeecCCchHH
Confidence            4677888889999999999999999987789999999987764 445889999999999999999999999999999999


Q ss_pred             EEecCCCCCCCH------------HHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCc
Q 047066          178 VNEFVKLPTISW------------EVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDET  232 (256)
Q Consensus       178 v~e~~~~~~l~~------------~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~  232 (256)
                      ++||+++|.|..            ...++++.|||             ||+.++|||+|.++++||+|||++|.+...+.
T Consensus       613 I~EYmEnGDLnqFl~aheapt~~t~~~vsi~tqiasgmaYLes~nfVHrd~a~rNcLv~~e~~iKiadfgmsR~lysg~y  692 (807)
T KOG1094|consen  613 ITEYMENGDLNQFLSAHELPTAETAPGVSICTQIASGMAYLESLNFVHRDLATRNCLVDGEFTIKIADFGMSRNLYSGDY  692 (807)
T ss_pred             HHHHHhcCcHHHHHHhccCcccccchhHHHHHHHHHHHHHHHhhchhhccccccceeecCcccEEecCcccccccccCCc
Confidence            999999988632            22345666655             79999999999999999999999998765555


Q ss_pred             eeee-eeeecccc----cccccCCCCCCC
Q 047066          233 QLST-MVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       233 ~~~~-~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      +... ..+=..+|    .+.-|+||++||
T Consensus       693 y~vqgr~vlpiRwmawEsillgkFttaSD  721 (807)
T KOG1094|consen  693 YRVQGRAVLPIRWMAWESILLGKFTTASD  721 (807)
T ss_pred             eeeecceeeeeeehhHHHHHhccccchhh
Confidence            4332 33445566    777899999998

>KOG0593 consensus Predicted protein kinase KKIAMRE [General function prediction only]

Probab=99.93  E-value=2.8e-26  Score=185.08  Aligned_cols=140  Identities=25%  Similarity=0.323  Sum_probs=111.6

Q ss_pred             CCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC--hhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEe
Q 047066          104 NNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY--QSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNE  180 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e  180 (256)
                      +.|+.+..+|+|+||.|++|+++ +|+.||||+.....  +.-..-.++|+.+|++++|||+|.+.++|.....+++|+|
T Consensus         2 ekYE~LgkvGEGSYGvV~KCrnk~TgqIVAIKkF~Esedd~~VkKIAlREIrmLKqLkH~NLVnLiEVFrrkrklhLVFE   81 (396)
T KOG0593|consen    2 EKYEKLGKVGEGSYGVVMKCRNKDTGQIVAIKKFVESEDDPVVKKIALREIRMLKQLKHENLVNLIEVFRRKRKLHLVFE   81 (396)
T ss_pred             cHHhhhhccccCcceEEEEeccCCcccEEEEEeeccCCccHHHHHHHHHHHHHHHhcccchHHHHHHHHHhcceeEEEee
Confidence            35777789999999999999987 59999999875433  3333557999999999999999999999999999999999


Q ss_pred             cCCCCC----------CCHHHHHHHHHH-------------HHhccCCCcEEEcCCCcEEEEecCCceecCCCCceeeee
Q 047066          181 FVKLPT----------ISWEVRIRIAAE-------------TAEDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTM  237 (256)
Q Consensus       181 ~~~~~~----------l~~~~~~~~~~~-------------i~rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~~  237 (256)
                      ||+.--          ++......+..|             |||||||+|||++.++.+||||||+|+.+..+... .+.
T Consensus        82 ~~dhTvL~eLe~~p~G~~~~~vk~~l~Q~l~ai~~cHk~n~IHRDIKPENILit~~gvvKLCDFGFAR~L~~pgd~-YTD  160 (396)
T KOG0593|consen   82 YCDHTVLHELERYPNGVPSELVKKYLYQLLKAIHFCHKNNCIHRDIKPENILITQNGVVKLCDFGFARTLSAPGDN-YTD  160 (396)
T ss_pred             ecchHHHHHHHhccCCCCHHHHHHHHHHHHHHhhhhhhcCeecccCChhheEEecCCcEEeccchhhHhhcCCcch-hhh
Confidence            997733          333333344433             44899999999999999999999999998743322 344


Q ss_pred             eeecccc
Q 047066          238 VQGTLGY  244 (256)
Q Consensus       238 ~~Gt~~y  244 (256)
                      -+.|.||
T Consensus       161 YVATRWY  167 (396)
T KOG0593|consen  161 YVATRWY  167 (396)
T ss_pred             hhhhhhc
Confidence            5577787

>KOG0659 consensus Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, kinase subunit CDK7 [Cell cycle control, cell division, chromosome partitioning; Transcription; Replication, recombination and repair]

Probab=99.93  E-value=8.4e-26  Score=179.19  Aligned_cols=152  Identities=20%  Similarity=0.269  Sum_probs=118.9

Q ss_pred             CCCcccceeeeeCceEEEEEEE-CCCcEEEEEEecccCh--hHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEe
Q 047066          104 NNYAYDRMIGRGGYGTVFLGSL-SDNKAIAIKKSRIVYQ--SQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNE  180 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~V~~~~~-~~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e  180 (256)
                      .+|...+.+|+|.||.||+|+. .+|+.||||+++....  .-.....+|+..|+.++|+||+.+.++|...+.+.+|+|
T Consensus         2 ~rY~~~~~lGEG~~gvVyka~d~~t~~~VAIKKIkl~~~kdGi~~talREIK~Lqel~h~nIi~LiD~F~~~~~l~lVfE   81 (318)
T KOG0659|consen    2 DRYEKLEKLGEGTYGVVYKARDTETGKRVAIKKIKLGNAKDGINRTALREIKLLQELKHPNIIELIDVFPHKSNLSLVFE   81 (318)
T ss_pred             chhhhhhhhcCcceEEEEEEEecCCCcEEEEEEeeccccccCccHHHHHHHHHHHHccCcchhhhhhhccCCCceEEEEE
Confidence            4677888999999999999995 5799999999876542  223568999999999999999999999999999999999


Q ss_pred             cCCCC----------CCCHH-------------HHHHHHHHHHhccCCCcEEEcCCCcEEEEecCCceecCCCCceeeee
Q 047066          181 FVKLP----------TISWE-------------VRIRIAAETAEDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTM  237 (256)
Q Consensus       181 ~~~~~----------~l~~~-------------~~~~~~~~i~rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~~  237 (256)
                      |++..          -|+..             ..+|....+||||||.|+|++++|.+||+|||+|+.+..+.......
T Consensus        82 fm~tdLe~vIkd~~i~l~pa~iK~y~~m~LkGl~y~H~~~IlHRDlKPnNLLis~~g~lKiADFGLAr~f~~p~~~~~~~  161 (318)
T KOG0659|consen   82 FMPTDLEVVIKDKNIILSPADIKSYMLMTLKGLAYCHSKWILHRDLKPNNLLISSDGQLKIADFGLARFFGSPNRIQTHQ  161 (318)
T ss_pred             eccccHHHHhcccccccCHHHHHHHHHHHHHHHHHHHhhhhhcccCCccceEEcCCCcEEeecccchhccCCCCcccccc
Confidence            99751          12211             22344445669999999999999999999999999987654443333


Q ss_pred             eeecccc-----cccccCCCCCCC
Q 047066          238 VQGTLGY-----YLHTSQGTLNKE  256 (256)
Q Consensus       238 ~~Gt~~y-----~~~~~~~t~ksD  256 (256)
                       +-|.+|     .+...+|+...|
T Consensus       162 -V~TRWYRAPELLfGsr~Yg~~VD  184 (318)
T KOG0659|consen  162 -VVTRWYRAPELLFGSRQYGTGVD  184 (318)
T ss_pred             -eeeeeccChHHhccchhcCCcch
Confidence             578888     444556665554

>KOG0597 consensus Serine-threonine protein kinase FUSED [General function prediction only]

Probab=99.92  E-value=2e-25  Score=192.99  Aligned_cols=152  Identities=26%  Similarity=0.378  Sum_probs=128.7

Q ss_pred             CCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC--hhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEe
Q 047066          104 NNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY--QSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNE  180 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e  180 (256)
                      ++|.+.+.||+|+||.||+|+.+ +.+.||+|.+....  +.+...+.+|++++++++||||+.++++|++..+.|+|+|
T Consensus         2 e~yhv~e~iG~Gsfg~VYKgrrK~t~~~vAik~i~K~gr~~k~l~~l~~ev~i~r~lkHpniv~m~esfEt~~~~~vVte   81 (808)
T KOG0597|consen    2 EQYHVYEMIGEGSFGRVYKGRRKYTIQVVAIKFIDKSGRNEKELKNLRQEVRILRSLKHPNIVEMLESFETSAHLWVVTE   81 (808)
T ss_pred             cchhHHHHhcCCccceeeecccccceeEEEEEEehhcCCchHHHHHHHHHHHHHHhcCCcchhhHHHhhcccceEEEEeh
Confidence            57888899999999999999965 67889999886543  4556789999999999999999999999999999999999


Q ss_pred             cCCC---------CCCCHHHHHHHHHHH-------------HhccCCCcEEEcCCCcEEEEecCCceecCCCCceeeeee
Q 047066          181 FVKL---------PTISWEVRIRIAAET-------------AEDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMV  238 (256)
Q Consensus       181 ~~~~---------~~l~~~~~~~~~~~i-------------~rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~~~  238 (256)
                      |+.+         +.|++.....++.++             +||+||+|||++..+.+|++|||+|+.+..+ +...+.+
T Consensus        82 ~a~g~L~~il~~d~~lpEe~v~~~a~~LVsaL~yLhs~rilhrd~kPqniLl~~~~~~KlcdFg~Ar~m~~~-t~vltsi  160 (808)
T KOG0597|consen   82 YAVGDLFTILEQDGKLPEEQVRAIAYDLVSALYYLHSNRILHRDMKPQNILLEKGGTLKLCDFGLARAMSTN-TSVLTSI  160 (808)
T ss_pred             hhhhhHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHhcCcccccCCcceeeecCCCceeechhhhhhhcccC-ceeeeec
Confidence            9976         666766666555543             3799999999999999999999999988754 4445677


Q ss_pred             eecccc----cccccCCCCCCC
Q 047066          239 QGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       239 ~Gt~~y----~~~~~~~t~ksD  256 (256)
                      .|||-|    .+.++.|+..+|
T Consensus       161 kGtPlYmAPElv~e~pyd~~sD  182 (808)
T KOG0597|consen  161 KGTPLYMAPELVEEQPYDHTSD  182 (808)
T ss_pred             cCcccccCHHHHcCCCccchhh
Confidence            899999    666788887776

>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.92  E-value=7.9e-25  Score=193.01  Aligned_cols=157  Identities=25%  Similarity=0.302  Sum_probs=129.9

Q ss_pred             HHhhcCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEeccc---ChhHHHHHHHHHHHHHhC-CCCcccceeeEEEECC
Q 047066           99 LKIATNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIV---YQSQIEQCINKVVVLSQI-NHRNVVGLLGCCLETE  173 (256)
Q Consensus        99 ~~~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~  173 (256)
                      .....++|.++++||+|+||+|+++..+ +++.+|||.++..   ..++++..+.|..++.-. +||.+++++.+|.+++
T Consensus       363 ~~~~l~~F~~l~vLGkGsFGkV~lae~k~~~e~yAIK~LKK~~Il~~d~Ve~~~~EkrI~~la~~HPFL~~L~~~fQT~~  442 (694)
T KOG0694|consen  363 GPLTLDDFRLLAVLGRGSFGKVLLAELKGTNEYYAIKVLKKGDILQRDEVESLMCEKRIFELANRHPFLVNLFSCFQTKE  442 (694)
T ss_pred             CcccccceEEEEEeccCcCceEEEEEEcCCCcEEEEEEeeccceeccccHHHHHHHHHHHHHhccCCeEeecccccccCC
Confidence            3455678999999999999999999976 5788999988754   367788899999998877 6999999999999999


Q ss_pred             EEEEEEecCCCCCC---------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCC
Q 047066          174 VPLLVNEFVKLPTI---------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDE  231 (256)
Q Consensus       174 ~~~lv~e~~~~~~l---------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~  231 (256)
                      ++++||||+.||++         +......++..|+             ||||.+|||+|.+|++||+||||++.--...
T Consensus       443 ~l~fvmey~~Ggdm~~~~~~~~F~e~rarfyaAev~l~L~fLH~~~IIYRDlKLdNiLLD~eGh~kiADFGlcKe~m~~g  522 (694)
T KOG0694|consen  443 HLFFVMEYVAGGDLMHHIHTDVFSEPRARFYAAEVVLGLQFLHENGIIYRDLKLDNLLLDTEGHVKIADFGLCKEGMGQG  522 (694)
T ss_pred             eEEEEEEecCCCcEEEEEecccccHHHHHHHHHHHHHHHHHHHhcCceeeecchhheEEcccCcEEecccccccccCCCC
Confidence            99999999999774         4444444444333             8999999999999999999999999753222


Q ss_pred             ceeeeeeeecccc----cccccCCCCCCC
Q 047066          232 TQLSTMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       232 ~~~~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      . ...+.||||.|    .+.+..||.+.|
T Consensus       523 ~-~TsTfCGTpey~aPEil~e~~Yt~aVD  550 (694)
T KOG0694|consen  523 D-RTSTFCGTPEFLAPEVLTEQSYTRAVD  550 (694)
T ss_pred             C-ccccccCChhhcChhhhccCcccchhh
Confidence            2 34568999999    788899999887

>KOG0194 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=99.92  E-value=7.7e-25  Score=190.74  Aligned_cols=162  Identities=22%  Similarity=0.369  Sum_probs=129.0

Q ss_pred             cccChHHHHhhcCCCcccceeeeeCceEEEEEEECC--C--cE-EEEEEecc---cChhHHHHHHHHHHHHHhCCCCccc
Q 047066           92 KIFTAGELKIATNNYAYDRMIGRGGYGTVFLGSLSD--N--KA-IAIKKSRI---VYQSQIEQCINKVVVLSQINHRNVV  163 (256)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~--~--~~-vavK~~~~---~~~~~~~~~~~E~~~l~~l~h~niv  163 (256)
                      .......|++..++..+.+.||+|+||+||+|.++.  +  .. ||+|..+.   ........+++|+++|++++|||||
T Consensus       145 ~PI~r~~Wel~H~~v~l~kkLGeGaFGeV~~G~l~~~~~~~~~~VAvK~~k~~~~~~~~~~~e~m~EArvMr~l~H~NVV  224 (474)
T KOG0194|consen  145 RPIPRQKWELSHSDIELGKKLGEGAFGEVFKGKLKLKNGFKVVPVAVKTTKGSSELTKEQIKEFMKEARVMRQLNHPNVV  224 (474)
T ss_pred             ccccccccEEeccCccccceeecccccEEEEEEEEecCCceeeeeEEEeecccccccHHHHHHHHHHHHHHHhCCCCCEE
Confidence            345567799999999999999999999999998642  2  23 89998875   3467778999999999999999999


Q ss_pred             ceeeEEEECCEEEEEEecCCCCCC-----------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEE
Q 047066          164 GLLGCCLETEVPLLVNEFVKLPTI-----------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVC  219 (256)
Q Consensus       164 ~l~~~~~~~~~~~lv~e~~~~~~l-----------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~  219 (256)
                      +++|++....++++|||+|++|+|           +..+++.++.+.|             |||.++|+|++.++.+||+
T Consensus       225 r~yGVa~~~~Pl~ivmEl~~gGsL~~~L~k~~~~v~~~ek~~~~~~AA~Gl~YLh~k~~IHRDIAARNcL~~~~~~vKIS  304 (474)
T KOG0194|consen  225 RFYGVAVLEEPLMLVMELCNGGSLDDYLKKNKKSLPTLEKLRFCYDAARGLEYLHSKNCIHRDIAARNCLYSKKGVVKIS  304 (474)
T ss_pred             EEEEEEcCCCccEEEEEecCCCcHHHHHHhCCCCCCHHHHHHHHHHHHhHHHHHHHCCCcchhHhHHHheecCCCeEEeC
Confidence            999999999999999999999775           4555666666654             7999999999999999999


Q ss_pred             ecCCceecCCCCceee-e-eeeecccc----cccccCCCCCCC
Q 047066          220 DFGASKLVPIDETQLS-T-MVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       220 DFGla~~~~~~~~~~~-~-~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      ||||++.-.   .+.. . ...-...|    .+..+.||+|+|
T Consensus       305 DFGLs~~~~---~~~~~~~~~klPirWLAPEtl~~~~~s~kTD  344 (474)
T KOG0194|consen  305 DFGLSRAGS---QYVMKKFLKKLPIRWLAPETLNTGIFSFKTD  344 (474)
T ss_pred             ccccccCCc---ceeeccccccCcceecChhhhccCccccccc
Confidence            999988632   1111 1 11123445    677778898888

>KOG2052 consensus Activin A type IB receptor, serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.91  E-value=2.7e-24  Score=181.25  Aligned_cols=149  Identities=20%  Similarity=0.286  Sum_probs=114.4

Q ss_pred             cccChHHHHhhcCCCcccceeeeeCceEEEEEEECCCcEEEEEEecccChhHHHHHHHHHHHHHh--CCCCcccceeeEE
Q 047066           92 KIFTAGELKIATNNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQ--INHRNVVGLLGCC  169 (256)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~--l~h~niv~l~~~~  169 (256)
                      ...+.--.....+...+.+.+|+|.||+||+|++ .|..||||+....++   +.+.+|.++.+.  |+|+||+.+++.-
T Consensus       199 SGlplLVQRTiarqI~L~e~IGkGRyGEVwrG~w-rGe~VAVKiF~srdE---~SWfrEtEIYqTvmLRHENILgFIaaD  274 (513)
T KOG2052|consen  199 SGLPLLVQRTIARQIVLQEIIGKGRFGEVWRGRW-RGEDVAVKIFSSRDE---RSWFRETEIYQTVMLRHENILGFIAAD  274 (513)
T ss_pred             CCchhHhHHhhhheeEEEEEecCccccceeeccc-cCCceEEEEecccch---hhhhhHHHHHHHHHhccchhhhhhhcc
Confidence            3344434444557889999999999999999999 788999998865443   567889999875  4999999999887


Q ss_pred             EECC----EEEEEEecCCCCCCCH---------HHHHHHHHHHH---------------------hccCCCcEEEcCCCc
Q 047066          170 LETE----VPLLVNEFVKLPTISW---------EVRIRIAAETA---------------------EDIKSINILLDDNYT  215 (256)
Q Consensus       170 ~~~~----~~~lv~e~~~~~~l~~---------~~~~~~~~~i~---------------------rdlk~~NiLi~~~~~  215 (256)
                      ..++    .+|+|++|.+.|+|..         ...++++..+|                     ||||++|||+..++.
T Consensus       275 ~~~~gs~TQLwLvTdYHe~GSL~DyL~r~tv~~~~ml~LalS~AsGLaHLH~eI~GTqgKPaIAHRDlKSKNILVKkn~~  354 (513)
T KOG2052|consen  275 NKDNGSWTQLWLVTDYHEHGSLYDYLNRNTVTTEGMLKLALSIASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGT  354 (513)
T ss_pred             ccCCCceEEEEEeeecccCCcHHHHHhhccCCHHHHHHHHHHHhhhHHHHHHHHhcCCCCchhhccccccccEEEccCCc
Confidence            6533    5899999999998732         22333333322                     799999999999999


Q ss_pred             EEEEecCCceecCCCCce---eeeeeeecccc
Q 047066          216 TKVCDFGASKLVPIDETQ---LSTMVQGTLGY  244 (256)
Q Consensus       216 ~ki~DFGla~~~~~~~~~---~~~~~~Gt~~y  244 (256)
                      +.|+|+|||-....+...   ..+..+||.+|
T Consensus       355 C~IADLGLAv~h~~~t~~idi~~N~rVGTKRY  386 (513)
T KOG2052|consen  355 CCIADLGLAVRHDSDTDTIDIPPNPRVGTKRY  386 (513)
T ss_pred             EEEeeceeeEEecccCCcccCCCCCccceeec
Confidence            999999999876544322   23556799999

>KOG0661 consensus MAPK related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.91  E-value=3.1e-25  Score=188.24  Aligned_cols=153  Identities=25%  Similarity=0.310  Sum_probs=126.4

Q ss_pred             hcCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccChhHH-HHHHHHHHHHHhCC-CCcccceeeEEEECC-EEEE
Q 047066          102 ATNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVYQSQI-EQCINKVVVLSQIN-HRNVVGLLGCCLETE-VPLL  177 (256)
Q Consensus       102 ~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~-~~~~~E~~~l~~l~-h~niv~l~~~~~~~~-~~~l  177 (256)
                      ..++|.+.+.||.|.||.||+|..+ ++..||||+.+....... -.-++|+..|++|+ ||||+++.+++.+.+ .+++
T Consensus         8 ~m~RY~~i~klGDGTfGsV~la~~~~~~~~VAIK~MK~Kf~s~ee~~nLREvksL~kln~hpniikL~Evi~d~~~~L~f   87 (538)
T KOG0661|consen    8 FMDRYTVIRKLGDGTFGSVYLAKSKETGELVAIKKMKKKFYSWEECMNLREVKSLRKLNPHPNIIKLKEVIRDNDRILYF   87 (538)
T ss_pred             HHHHHHHHHHhcCCcceeEEEeeecCCCceeeHHHHHhhhccHHHHHHHHHHHHHHhcCCCCcchhhHHHhhccCceEee
Confidence            3468999999999999999999954 688999998875443332 23588999999998 999999999999877 9999


Q ss_pred             EEecCCC----------CCCCHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCcee
Q 047066          178 VNEFVKL----------PTISWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQL  234 (256)
Q Consensus       178 v~e~~~~----------~~l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~  234 (256)
                      |||||+.          ..++......++.||.             ||+||+|||+..+..+||+|||+||.+...  ..
T Consensus        88 VfE~Md~NLYqLmK~R~r~fse~~irnim~QilqGL~hiHk~GfFHRDlKPENiLi~~~~~iKiaDFGLARev~Sk--pP  165 (538)
T KOG0661|consen   88 VFEFMDCNLYQLMKDRNRLFSESDIRNIMYQILQGLAHIHKHGFFHRDLKPENILISGNDVIKIADFGLAREVRSK--PP  165 (538)
T ss_pred             eHHhhhhhHHHHHhhcCCcCCHHHHHHHHHHHHHHHHHHHhcCcccccCChhheEecccceeEecccccccccccC--CC
Confidence            9999965          4567777777777766             799999999998889999999999987543  33


Q ss_pred             eeeeeecccc-----cccccCCCCCCC
Q 047066          235 STMVQGTLGY-----YLHTSQGTLNKE  256 (256)
Q Consensus       235 ~~~~~Gt~~y-----~~~~~~~t~ksD  256 (256)
                      .|.-+-|.||     .+..+-||.+.|
T Consensus       166 YTeYVSTRWYRAPEvLLrs~~Ys~pvD  192 (538)
T KOG0661|consen  166 YTEYVSTRWYRAPEVLLRSGYYSSPVD  192 (538)
T ss_pred             cchhhhcccccchHHhhhccccCCchH
Confidence            4556688899     778888888776

>KOG1095 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=99.91  E-value=1.9e-24  Score=200.96  Aligned_cols=156  Identities=23%  Similarity=0.438  Sum_probs=130.0

Q ss_pred             hhcCCCcccceeeeeCceEEEEEEECC--Cc----EEEEEEeccc-ChhHHHHHHHHHHHHHhCCCCcccceeeEEEECC
Q 047066          101 IATNNYAYDRMIGRGGYGTVFLGSLSD--NK----AIAIKKSRIV-YQSQIEQCINKVVVLSQINHRNVVGLLGCCLETE  173 (256)
Q Consensus       101 ~~~~~~~~~~~lg~G~~g~V~~~~~~~--~~----~vavK~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~  173 (256)
                      ++..+.++.+.||+|.||.||.|...+  +.    .||+|.++.. +.++..+|++|..+|++++|||||+++|+|.+..
T Consensus       689 v~~~~v~l~~~lG~G~FG~VY~g~~~~~~~~~~~~~vaiK~l~~~~~~~~~~~Fl~Ea~~m~~f~HpNiv~liGv~l~~~  768 (1025)
T KOG1095|consen  689 VPRKNVTLLRVLGKGAFGEVYEGTYSDVPGSVSPIQVAVKSLKRLSSEQEVSDFLKEALLMSKFDHPNIVSLIGVCLDSG  768 (1025)
T ss_pred             CChhheEeeeeeccccccceEEEEEecCCCCccceEEEEEeccccCCHHHHHHHHHHHHHHhcCCCcceeeEEEeecCCC
Confidence            456788889999999999999998542  33    4899988654 4677789999999999999999999999999999


Q ss_pred             EEEEEEecCCCCCC-----------------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCC
Q 047066          174 VPLLVNEFVKLPTI-----------------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGA  223 (256)
Q Consensus       174 ~~~lv~e~~~~~~l-----------------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGl  223 (256)
                      ..++++|||++|.|                 +-.+.+.++.|||             |||.++|+|+++...|||+||||
T Consensus       769 ~~~i~leyM~gGDL~sflr~~r~~~~~~~~L~~~dLl~~a~dvA~G~~YLe~~~fvHRDLAaRNCLL~~~r~VKIaDFGl  848 (1025)
T KOG1095|consen  769 PPLILLEYMEGGDLLSFLRESRPAPFQPSNLSMRDLLAFALDVAKGMNYLESKHFVHRDLAARNCLLDERRVVKIADFGL  848 (1025)
T ss_pred             CcEEEehhcccCcHHHHHHhcccccCCCCCCCHHHHHHHHHHHhhhhHHHHhCCCcCcchhhhheeecccCcEEEcccch
Confidence            99999999999775                 4566688888888             69999999999999999999999


Q ss_pred             ceecCCCCceeeeee-eecccc----cccccCCCCCCC
Q 047066          224 SKLVPIDETQLSTMV-QGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       224 a~~~~~~~~~~~~~~-~Gt~~y----~~~~~~~t~ksD  256 (256)
                      |+.+...+.+..... .=...|    .+..+.||.|||
T Consensus       849 ArDiy~~~yyr~~~~a~lPvkWm~PEsl~d~iFtskSD  886 (1025)
T KOG1095|consen  849 ARDIYDKDYYRKHGEAMLPVKWMPPESLKDGIFTSKSD  886 (1025)
T ss_pred             hHhhhhchheeccCccccceecCCHHHHhhcccccccc
Confidence            997766655544332 122345    777899999998

>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]

Probab=99.91  E-value=7.1e-24  Score=179.93  Aligned_cols=138  Identities=28%  Similarity=0.410  Sum_probs=113.9

Q ss_pred             cCCCcccceeeeeCceEEEEEEECCCcEEEEEEecccChhHHHHHHHHHHHHHh--CCCCcccceeeEEEECC----EEE
Q 047066          103 TNNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQ--INHRNVVGLLGCCLETE----VPL  176 (256)
Q Consensus       103 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~--l~h~niv~l~~~~~~~~----~~~  176 (256)
                      ....++.+++|+|.||.||+|.+ +++.||||+...   .+.+.|.+|-+|.+.  ++|+||++++++-....    .++
T Consensus       209 l~pl~l~eli~~Grfg~V~KaqL-~~~~VAVKifp~---~~kqs~~~Ek~Iy~lp~m~h~nIl~Fi~~ekr~t~~~~eyw  284 (534)
T KOG3653|consen  209 LDPLQLLELIGRGRFGCVWKAQL-DNRLVAVKIFPE---QEKQSFQNEKNIYSLPGMKHENILQFIGAEKRGTADRMEYW  284 (534)
T ss_pred             CCchhhHHHhhcCccceeehhhc-cCceeEEEecCH---HHHHHHHhHHHHHhccCccchhHHHhhchhccCCcccccee
Confidence            35667778999999999999998 569999998764   455778889888765  58999999999887655    899


Q ss_pred             EEEecCCCCCC---------CHHHHHHHHHHHH----------------------hccCCCcEEEcCCCcEEEEecCCce
Q 047066          177 LVNEFVKLPTI---------SWEVRIRIAAETA----------------------EDIKSINILLDDNYTTKVCDFGASK  225 (256)
Q Consensus       177 lv~e~~~~~~l---------~~~~~~~~~~~i~----------------------rdlk~~NiLi~~~~~~ki~DFGla~  225 (256)
                      +|+||.+.|+|         +|...++++..++                      ||||++|||+.+|+++.|+|||||.
T Consensus       285 LVt~fh~kGsL~dyL~~ntisw~~~cria~SmarGLa~LHee~p~~d~~Kp~IaHRDlkSkNVLvK~DlTccIaDFGLAl  364 (534)
T KOG3653|consen  285 LVTEFHPKGSLCDYLKANTISWNSLCRIAESMARGLAHLHEELPRGDHHKPPIAHRDLKSKNVLVKNDLTCCIADFGLAL  364 (534)
T ss_pred             EEeeeccCCcHHHHHHhccccHHHHHHHHHHHHHHHHHhcccCCcCCCCCCccccccccccceEEccCCcEEeeccceeE
Confidence            99999999886         6777777776665                      5999999999999999999999999


Q ss_pred             ecCCCCceee-eeeeecccc
Q 047066          226 LVPIDETQLS-TMVQGTLGY  244 (256)
Q Consensus       226 ~~~~~~~~~~-~~~~Gt~~y  244 (256)
                      .+........ ...+||.+|
T Consensus       365 ~~~p~~~~~d~~~qVGT~RY  384 (534)
T KOG3653|consen  365 RLEPGKPQGDTHGQVGTRRY  384 (534)
T ss_pred             EecCCCCCcchhhhhhhhhh
Confidence            9875544332 235699999

>KOG0592 consensus 3-phosphoinositide-dependent protein kinase (PDK1) [Signal transduction mechanisms]

Probab=99.90  E-value=2.5e-24  Score=185.34  Aligned_cols=156  Identities=24%  Similarity=0.349  Sum_probs=123.6

Q ss_pred             hhcCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEeccc---ChhHHHHHHHHHHHHHhC-CCCcccceeeEEEECCEE
Q 047066          101 IATNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIV---YQSQIEQCINKVVVLSQI-NHRNVVGLLGCCLETEVP  175 (256)
Q Consensus       101 ~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~  175 (256)
                      ..-.+|.+++.||+|+|++|++|+.+ +++.+|||++...   .+....-...|-+.|..| .||.|++|+-.|.+...+
T Consensus        70 k~~~DF~Fg~~lGeGSYStV~~A~~~~t~keYAiKVl~K~~Iike~KvkYV~~Ek~~l~~L~~hPgivkLy~TFQD~~sL  149 (604)
T KOG0592|consen   70 KTPNDFKFGKILGEGSYSTVVLAREKATGKEYAIKVLDKRYIIKEKKVKYVTREKEALTQLSGHPGIVKLYFTFQDEESL  149 (604)
T ss_pred             CChhhcchhheeccccceeEEEeeecCCCceeeHhhhhHHHHHhhcccchhhHHHHHHHHhhCCCCeEEEEEEeecccce
Confidence            34468999999999999999999964 6899999987542   223334567899999999 899999999999999999


Q ss_pred             EEEEecCCCCCC----------CHHH-------------HHHHHHHHHhccCCCcEEEcCCCcEEEEecCCceecCCCCc
Q 047066          176 LLVNEFVKLPTI----------SWEV-------------RIRIAAETAEDIKSINILLDDNYTTKVCDFGASKLVPIDET  232 (256)
Q Consensus       176 ~lv~e~~~~~~l----------~~~~-------------~~~~~~~i~rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~  232 (256)
                      |+|+||+++|.|          +...             .+|-...|||||||+|||+|.++++||+|||.|+.+++...
T Consensus       150 YFvLe~A~nGdll~~i~K~Gsfde~caR~YAAeIldAleylH~~GIIHRDlKPENILLd~dmhikITDFGsAK~l~~~~~  229 (604)
T KOG0592|consen  150 YFVLEYAPNGDLLDLIKKYGSFDETCARFYAAEILDALEYLHSNGIIHRDLKPENILLDKDGHIKITDFGSAKILSPSQK  229 (604)
T ss_pred             EEEEEecCCCcHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCceeccCChhheeEcCCCcEEEeeccccccCChhhc
Confidence            999999999775          2222             23334456799999999999999999999999998853211


Q ss_pred             e----------ee--eeeeecccc----cccccCCCCCCC
Q 047066          233 Q----------LS--TMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       233 ~----------~~--~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      .          ..  ...+||..|    .+..+..+..||
T Consensus       230 ~~~~~~~~~~a~s~~~SFVGTAeYVSPElL~~~~~~~~sD  269 (604)
T KOG0592|consen  230 SQENPVDPNQASSRRSSFVGTAEYVSPELLNDSPAGPSSD  269 (604)
T ss_pred             cccCccCcccccCcccceeeeecccCHHHhcCCCCCcccc
Confidence            1          11  346899999    777777788777

>KOG0611 consensus Predicted serine/threonine protein kinase [General function prediction only]

Probab=99.90  E-value=2.2e-24  Score=180.34  Aligned_cols=140  Identities=24%  Similarity=0.358  Sum_probs=119.6

Q ss_pred             cCCCcccceeeeeCceEEEEEEE-CCCcEEEEEEeccc---ChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEE
Q 047066          103 TNNYAYDRMIGRGGYGTVFLGSL-SDNKAIAIKKSRIV---YQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLV  178 (256)
Q Consensus       103 ~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv  178 (256)
                      ..+|++.+.||+|.||+|-++.. ..|+.||||.++..   ++.+.-++.+|+++|..|+||||++++.+|+..+.+.+|
T Consensus        52 kHRyE~~etLGkGTYGKVk~A~e~~sgR~VAiKsIrKdkIkdeqDlvhIRREIeIMSsLNHPhII~IyEVFENkdKIviv  131 (668)
T KOG0611|consen   52 KHRYEITETLGKGTYGKVKLAYEHKSGREVAIKSIRKDKIKDEQDLVHIRREIEIMSSLNHPHIIQIYEVFENKDKIVIV  131 (668)
T ss_pred             hhHHHHHHHhcCCcccceeehhhccCCcEeehhhhhhhhcccHHHHHHHHHHHHHHhhcCCCceeehhhhhcCCceEEEE
Confidence            46799999999999999999984 68999999987643   355556789999999999999999999999999999999


Q ss_pred             EecCCCCC----------CCHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceee
Q 047066          179 NEFVKLPT----------ISWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLS  235 (256)
Q Consensus       179 ~e~~~~~~----------l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~  235 (256)
                      |||..+|.          |++....++..||.             ||||.+|||+|+++++||+||||+-.+..+  ...
T Consensus       132 MEYaS~GeLYDYiSer~~LsErEaRhfFRQIvSAVhYCHknrVvHRDLKLENILLD~N~NiKIADFGLSNly~~~--kfL  209 (668)
T KOG0611|consen  132 MEYASGGELYDYISERGSLSEREARHFFRQIVSAVHYCHKNRVVHRDLKLENILLDQNNNIKIADFGLSNLYADK--KFL  209 (668)
T ss_pred             EEecCCccHHHHHHHhccccHHHHHHHHHHHHHHHHHHhhccceecccchhheeecCCCCeeeeccchhhhhccc--cHH
Confidence            99998754          56777777777765             799999999999999999999999876543  234


Q ss_pred             eeeeecccc
Q 047066          236 TMVQGTLGY  244 (256)
Q Consensus       236 ~~~~Gt~~y  244 (256)
                      ++.||+|-|
T Consensus       210 qTFCGSPLY  218 (668)
T KOG0611|consen  210 QTFCGSPLY  218 (668)
T ss_pred             HHhcCCccc
Confidence            567899999

>KOG0582 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.90  E-value=1.8e-23  Score=176.39  Aligned_cols=161  Identities=20%  Similarity=0.268  Sum_probs=129.4

Q ss_pred             hHHHHhhcCCCcccceeeeeCceEEEEEEE-CCCcEEEEEEecccC-hhHHHHHHHHHHHHHhCCCCcccceeeEEEECC
Q 047066           96 AGELKIATNNYAYDRMIGRGGYGTVFLGSL-SDNKAIAIKKSRIVY-QSQIEQCINKVVVLSQINHRNVVGLLGCCLETE  173 (256)
Q Consensus        96 ~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~  173 (256)
                      ..++....+.|++.++||.|..+.||+|+. +.+..||||++.... ..+.+.+.+|+..|+.++||||+.++..|..+.
T Consensus        18 ~~~~p~n~~~YeL~e~IG~G~sa~V~~A~c~p~~e~VAIK~inLEkc~~~ld~l~kE~~~msl~~HPNIv~~~~sFvv~~   97 (516)
T KOG0582|consen   18 EKEFPLNAKDYELQEVIGVGASAVVYLARCIPTNEVVAIKIINLEKCNNDLDALRKEVQTMSLIDHPNIVTYHCSFVVDS   97 (516)
T ss_pred             cccCCCCccceeEEEEEeccceeEeeeeeecccCCEEEEEEeehhhhhhhHHHHHHHHHHhhhcCCCCcceEEEEEEecc
Confidence            345566678999999999999999999994 468999999986543 444688999999999999999999999999999


Q ss_pred             EEEEEEecCCCCCCC-------------------------HHHHHHHHHHHHhccCCCcEEEcCCCcEEEEecCCceecC
Q 047066          174 VPLLVNEFVKLPTIS-------------------------WEVRIRIAAETAEDIKSINILLDDNYTTKVCDFGASKLVP  228 (256)
Q Consensus       174 ~~~lv~e~~~~~~l~-------------------------~~~~~~~~~~i~rdlk~~NiLi~~~~~~ki~DFGla~~~~  228 (256)
                      .+|+||.||.+|++.                         ....+|...+||||+|+.||||+.+|.|||+|||.+..+.
T Consensus        98 ~LWvVmpfMa~GS~ldIik~~~~~Gl~E~~Ia~iLre~LkaL~YLH~~G~IHRdvKAgnILi~~dG~VkLadFgvsa~l~  177 (516)
T KOG0582|consen   98 ELWVVMPFMAGGSLLDIIKTYYPDGLEEASIATILREVLKALDYLHQNGHIHRDVKAGNILIDSDGTVKLADFGVSASLF  177 (516)
T ss_pred             eeEEeehhhcCCcHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHhcCceecccccccEEEcCCCcEEEcCceeeeeec
Confidence            999999999998852                         2223455567889999999999999999999999887664


Q ss_pred             CCCceee---eeeeecccc------cccccCCCCCCC
Q 047066          229 IDETQLS---TMVQGTLGY------YLHTSQGTLNKE  256 (256)
Q Consensus       229 ~~~~~~~---~~~~Gt~~y------~~~~~~~t~ksD  256 (256)
                      .......   +..+|||.|      ..+-.-|+.|+|
T Consensus       178 ~~G~R~~~rf~tfvgtp~wmAPEvl~q~~~GYdfKaD  214 (516)
T KOG0582|consen  178 DSGDRQVTRFNTFVGTPCWMAPEVLMQQLHGYDFKAD  214 (516)
T ss_pred             ccCceeeEeeccccCcccccChHHhhhcccCccchhh
Confidence            4332211   445799999      333455777776

>KOG0583 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.90  E-value=4e-23  Score=178.20  Aligned_cols=142  Identities=25%  Similarity=0.356  Sum_probs=116.8

Q ss_pred             hcCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEeccc----Ch-hHHHHHHHHHHHHHhCC-CCcccceeeEEEECCE
Q 047066          102 ATNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIV----YQ-SQIEQCINKVVVLSQIN-HRNVVGLLGCCLETEV  174 (256)
Q Consensus       102 ~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~----~~-~~~~~~~~E~~~l~~l~-h~niv~l~~~~~~~~~  174 (256)
                      ....|.+.+.||+|+||+|+.|... ++..||+|.+...    .. ...+.+.+|+.+++.++ ||||+++++++.....
T Consensus        15 ~~g~y~~~~~lG~GsfgkV~~a~~~~t~~~vAiKii~~~~~~~~~~~~~~~i~rEi~~~~~~~~HpnI~~l~ev~~t~~~   94 (370)
T KOG0583|consen   15 SIGKYELGRTLGSGSFGKVKLAKHRLTGEKVAIKIIDRKKVSSKSQKLDELIKREISILRRLRSHPNIIRLLEVFATPTK   94 (370)
T ss_pred             ccCceeeeeeecCCCCeeEEEeeeccCCCeEEEEEechhcccccccccchhhHHHHHHHHHhccCCCEeEEEEEEecCCe
Confidence            4468999999999999999999864 6899999966542    11 23356678999999998 9999999999999999


Q ss_pred             EEEEEecCCCC----------CCCHHHHHHHHHHHH-------------hccCCCcEEEcCC-CcEEEEecCCceecCCC
Q 047066          175 PLLVNEFVKLP----------TISWEVRIRIAAETA-------------EDIKSINILLDDN-YTTKVCDFGASKLVPID  230 (256)
Q Consensus       175 ~~lv~e~~~~~----------~l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~-~~~ki~DFGla~~~~~~  230 (256)
                      .++||||+.+|          .+.+.....++.|++             |||||+|+|+|.+ +++||+|||++.... .
T Consensus        95 ~~ivmEy~~gGdL~~~i~~~g~l~E~~ar~~F~Qlisav~y~H~~gi~HRDLK~ENilld~~~~~~Kl~DFG~s~~~~-~  173 (370)
T KOG0583|consen   95 IYIVMEYCSGGDLFDYIVNKGRLKEDEARKYFRQLISAVAYCHSRGIVHRDLKPENILLDGNEGNLKLSDFGLSAISP-G  173 (370)
T ss_pred             EEEEEEecCCccHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHhCCEeeCCCCHHHEEecCCCCCEEEeccccccccC-C
Confidence            99999999984          456666666666655             7999999999999 999999999999874 2


Q ss_pred             Cceeeeeeeecccc
Q 047066          231 ETQLSTMVQGTLGY  244 (256)
Q Consensus       231 ~~~~~~~~~Gt~~y  244 (256)
                      ......+.|||+.|
T Consensus       174 ~~~~l~t~cGsp~Y  187 (370)
T KOG0583|consen  174 EDGLLKTFCGSPAY  187 (370)
T ss_pred             CCCcccCCCCCccc
Confidence            22334567899999

>KOG0663 consensus Protein kinase PITSLRE and related kinases [General function prediction only]

Probab=99.90  E-value=2.1e-24  Score=176.21  Aligned_cols=152  Identities=18%  Similarity=0.217  Sum_probs=116.8

Q ss_pred             CCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccCh--hHHHHHHHHHHHHHhCCCCcccceeeEEEE--CCEEEEE
Q 047066          104 NNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVYQ--SQIEQCINKVVVLSQINHRNVVGLLGCCLE--TEVPLLV  178 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~h~niv~l~~~~~~--~~~~~lv  178 (256)
                      +.|+.++.|++|+||.||+|+.+ +++.||+|+++-..+  ..-=..++|+.+|.+++|||||.+..+...  -+.+|+|
T Consensus        76 ~efe~lnrI~EGtyGiVYRakdk~t~eIVALKr~kmekek~GFPItsLREIniLl~~~H~NIV~vkEVVvG~~~d~iy~V  155 (419)
T KOG0663|consen   76 EEFEKLNRIEEGTYGVVYRAKDKKTDEIVALKRLKMEKEKEGFPITSLREINILLKARHPNIVEVKEVVVGSNMDKIYIV  155 (419)
T ss_pred             HHHHHHhhcccCcceeEEEeccCCcceeEEeeecccccccCCCcchhHHHHHHHHhcCCCCeeeeEEEEeccccceeeee
Confidence            45777889999999999999975 688999999865432  112246899999999999999999998875  4569999


Q ss_pred             EecCCCC----------CCCHHHH-------------HHHHHHHHhccCCCcEEEcCCCcEEEEecCCceecCCCCceee
Q 047066          179 NEFVKLP----------TISWEVR-------------IRIAAETAEDIKSINILLDDNYTTKVCDFGASKLVPIDETQLS  235 (256)
Q Consensus       179 ~e~~~~~----------~l~~~~~-------------~~~~~~i~rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~  235 (256)
                      ||||++.          .......             +|-...+||||||+|+|+++.|.+||+|||+||.++.+... .
T Consensus       156 Me~~EhDLksl~d~m~q~F~~~evK~L~~QlL~glk~lH~~wilHRDLK~SNLLm~~~G~lKiaDFGLAR~ygsp~k~-~  234 (419)
T KOG0663|consen  156 MEYVEHDLKSLMETMKQPFLPGEVKTLMLQLLRGLKHLHDNWILHRDLKTSNLLLSHKGILKIADFGLAREYGSPLKP-Y  234 (419)
T ss_pred             HHHHHhhHHHHHHhccCCCchHHHHHHHHHHHHHHHHHhhceeEecccchhheeeccCCcEEecccchhhhhcCCccc-C
Confidence            9999772          2222221             22223355899999999999999999999999999866433 4


Q ss_pred             eeeeecccc-----cccccCCCCCCC
Q 047066          236 TMVQGTLGY-----YLHTSQGTLNKE  256 (256)
Q Consensus       236 ~~~~Gt~~y-----~~~~~~~t~ksD  256 (256)
                      +..+-|.||     .+....|++..|
T Consensus       235 T~lVVTLWYRaPELLLG~~tyst~iD  260 (419)
T KOG0663|consen  235 TPLVVTLWYRAPELLLGAKTYSTAVD  260 (419)
T ss_pred             cceEEEeeecCHHHhcCCcccCcchh
Confidence            566789999     556667777665

>KOG0605 consensus NDR and related serine/threonine kinases [General function prediction only]

Probab=99.90  E-value=2.4e-23  Score=179.16  Aligned_cols=128  Identities=23%  Similarity=0.325  Sum_probs=108.2

Q ss_pred             HhhcCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC---hhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEE
Q 047066          100 KIATNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY---QSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVP  175 (256)
Q Consensus       100 ~~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~  175 (256)
                      .+..++|++++.||+|+||.||+|+-+ +|..+|+|+++...   ..+++++..|-.+|...++|+||+|+-.|.+.+.+
T Consensus       137 r~~~~DFe~Lk~IgkGAfGeVrLarKk~Tg~iyAmK~LkKS~M~~~~Qv~hV~aERdiL~~~ds~~vVKLyYsFQD~~~L  216 (550)
T KOG0605|consen  137 RLSLDDFELLKVIGKGAFGEVRLARKKDTGEIYAMKILKKSEMLKKNQVEHVRAERDILAEVDSPWVVKLYYSFQDKEYL  216 (550)
T ss_pred             cCCcccchhheeeccccceeEEEEEEccCCcEEeeecccHHHHHhhhhHHHHHHHHHHhhhcCCCcEEEEEEEecCCCee
Confidence            345678999999999999999999965 68999999987643   56678899999999999999999999999999999


Q ss_pred             EEEEecCCCCCC----------CHHHH-------------HHHHHHHHhccCCCcEEEcCCCcEEEEecCCceec
Q 047066          176 LLVNEFVKLPTI----------SWEVR-------------IRIAAETAEDIKSINILLDDNYTTKVCDFGASKLV  227 (256)
Q Consensus       176 ~lv~e~~~~~~l----------~~~~~-------------~~~~~~i~rdlk~~NiLi~~~~~~ki~DFGla~~~  227 (256)
                      |+||||++||.+          ++...             +|...-|||||||+|+|||..|++||+|||||..+
T Consensus       217 YLiMEylPGGD~mTLL~~~~~L~e~~arfYiaE~vlAI~~iH~~gyIHRDIKPdNlLiD~~GHiKLSDFGLs~gl  291 (550)
T KOG0605|consen  217 YLIMEYLPGGDMMTLLMRKDTLTEDWARFYIAETVLAIESIHQLGYIHRDIKPDNLLIDAKGHIKLSDFGLSTGL  291 (550)
T ss_pred             EEEEEecCCccHHHHHHhcCcCchHHHHHHHHHHHHHHHHHHHcCcccccCChhheeecCCCCEeeccccccchh
Confidence            999999999764          33222             22233466999999999999999999999999643

>KOG0578 consensus p21-activated serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.89  E-value=2.3e-23  Score=180.29  Aligned_cols=154  Identities=25%  Similarity=0.341  Sum_probs=127.6

Q ss_pred             hcCCCcccceeeeeCceEEEEEEE-CCCcEEEEEEecccChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEe
Q 047066          102 ATNNYAYDRMIGRGGYGTVFLGSL-SDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNE  180 (256)
Q Consensus       102 ~~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e  180 (256)
                      +...|.....+|+|+.|.||.+.. .+++.||+|++........+-+++|+.+|+..+|+|||.+++.+...+.+|+|||
T Consensus       271 P~~~y~~~~kigqgaSG~vy~A~~~~~~~~VaiK~m~l~~Q~~keLilnEi~Vm~~~~H~NiVnfl~Sylv~deLWVVME  350 (550)
T KOG0578|consen  271 PRSKYTDFKKIGQGATGGVYVARKISTKQEVAIKRMDLRKQPKKELLLNEILVMRDLHHPNIVNFLDSYLVGDELWVVME  350 (550)
T ss_pred             hhhhhcchhhhccccccceeeeeeccCCceEEEEEEEeccCCchhhhHHHHHHHHhccchHHHHHHHHhcccceeEEEEe
Confidence            345677778999999999999984 4788999999887776666889999999999999999999999999999999999


Q ss_pred             cCCCCCCC---------HHHHHHHHH-------------HHHhccCCCcEEEcCCCcEEEEecCCceecCCCCceeeeee
Q 047066          181 FVKLPTIS---------WEVRIRIAA-------------ETAEDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMV  238 (256)
Q Consensus       181 ~~~~~~l~---------~~~~~~~~~-------------~i~rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~~~  238 (256)
                      ||++|+|+         +.+...++.             .+|||||..|||++.+|.+||+|||+|..+........+ .
T Consensus       351 ym~ggsLTDvVt~~~~~E~qIA~Icre~l~aL~fLH~~gIiHrDIKSDnILL~~~g~vKltDFGFcaqi~~~~~KR~T-m  429 (550)
T KOG0578|consen  351 YMEGGSLTDVVTKTRMTEGQIAAICREILQGLKFLHARGIIHRDIKSDNILLTMDGSVKLTDFGFCAQISEEQSKRST-M  429 (550)
T ss_pred             ecCCCchhhhhhcccccHHHHHHHHHHHHHHHHHHHhcceeeeccccceeEeccCCcEEEeeeeeeeccccccCcccc-c
Confidence            99999974         222222332             344899999999999999999999999998766554444 4


Q ss_pred             eecccc----cccccCCCCCCC
Q 047066          239 QGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       239 ~Gt~~y----~~~~~~~t~ksD  256 (256)
                      +|||.|    ......|.+|.|
T Consensus       430 VGTPYWMAPEVvtrk~YG~KVD  451 (550)
T KOG0578|consen  430 VGTPYWMAPEVVTRKPYGPKVD  451 (550)
T ss_pred             cCCCCccchhhhhhcccCcccc
Confidence            599999    667778888877

>cd05621 STKc_ROCK2 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2

Probab=99.89  E-value=2.1e-22  Score=174.99  Aligned_cols=157  Identities=22%  Similarity=0.233  Sum_probs=121.7

Q ss_pred             HhhcCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEeccc---ChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEE
Q 047066          100 KIATNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIV---YQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVP  175 (256)
Q Consensus       100 ~~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~  175 (256)
                      ....++|++.+.||+|+||.||++..+ +++.+|+|.+...   .......+.+|+.+++.++||||+++++.+.+.+..
T Consensus        39 ~~~~~~y~~~~~lG~G~fg~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~i~~~~~hp~iv~~~~~~~~~~~~  118 (370)
T cd05621          39 QMKAEDYDVVKVIGRGAFGEVQLVRHKSSQKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFCAFQDDKYL  118 (370)
T ss_pred             CCCHHHCeEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCEE
Confidence            344578999999999999999999975 5789999987532   223345678899999999999999999999999999


Q ss_pred             EEEEecCCCCCCC---------HHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCce
Q 047066          176 LLVNEFVKLPTIS---------WEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQ  233 (256)
Q Consensus       176 ~lv~e~~~~~~l~---------~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~  233 (256)
                      ++||||+++|+|.         ......++.|++             |||||+|||+++++.+||+|||+|+.+......
T Consensus       119 ~lv~Ey~~gg~L~~~l~~~~~~~~~~~~~~~qil~aL~~LH~~~IvHrDLKp~NILl~~~~~~kL~DFG~a~~~~~~~~~  198 (370)
T cd05621         119 YMVMEYMPGGDLVNLMSNYDVPEKWAKFYTAEVVLALDAIHSMGLIHRDVKPDNMLLDKHGHLKLADFGTCMKMDETGMV  198 (370)
T ss_pred             EEEEcCCCCCcHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHCCeEecCCCHHHEEECCCCCEEEEecccceecccCCce
Confidence            9999999998763         333334444433             799999999999999999999999987543333


Q ss_pred             eeeeeeecccc----cccc----cCCCCCCC
Q 047066          234 LSTMVQGTLGY----YLHT----SQGTLNKE  256 (256)
Q Consensus       234 ~~~~~~Gt~~y----~~~~----~~~t~ksD  256 (256)
                      .....+||+.|    .+.+    +.++.++|
T Consensus       199 ~~~~~~gt~~Y~aPE~~~~~~~~~~~~~~~D  229 (370)
T cd05621         199 RCDTAVGTPDYISPEVLKSQGGDGYYGRECD  229 (370)
T ss_pred             ecccCCCCcccCCHHHHhccCCCCCCCcccC
Confidence            33445699999    2222    23677777

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found

>cd05628 STKc_NDR1 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 1

Probab=99.89  E-value=2.2e-22  Score=174.39  Aligned_cols=125  Identities=26%  Similarity=0.283  Sum_probs=103.7

Q ss_pred             CCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC---hhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEE
Q 047066          104 NNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY---QSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVN  179 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~  179 (256)
                      ++|++.+.||+|+||+||++... +++.+|+|.+....   ......+.+|+.++..++||||+++++.+.+.+..++||
T Consensus         1 ~~y~~~~~LG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~~~~~~iv~~~~~~~~~~~~~lv~   80 (363)
T cd05628           1 EDFESLKVIGRGAFGEVRLVQKKDTGHVYAMKILRKADMLEKEQVGHIRAERDILVEADSLWVVKMFYSFQDKLNLYLIM   80 (363)
T ss_pred             CCceEeEEEEeCCCEEEEEEEECCCCCEEEEEEEEHHHHHHhhHHHHHHHHHHHHHhCCCCCcceEEEEEecCCeEEEEE
Confidence            46888999999999999999865 58899999886432   233456888999999999999999999999999999999


Q ss_pred             ecCCCCCC----------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecC
Q 047066          180 EFVKLPTI----------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVP  228 (256)
Q Consensus       180 e~~~~~~l----------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~  228 (256)
                      ||+++|+|          ++.....++.|++             |||||+|||++.++.+||+|||+|+.+.
T Consensus        81 E~~~gg~L~~~l~~~~~l~~~~~~~~~~qi~~aL~~lH~~givHrDlKp~NILi~~~~~vkL~DFGla~~~~  152 (363)
T cd05628          81 EFLPGGDMMTLLMKKDTLTEEETQFYIAETVLAIDSIHQLGFIHRDIKPDNLLLDSKGHVKLSDFGLCTGLK  152 (363)
T ss_pred             cCCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeEecCCCHHHeEECCCCCEEEeeccCccccc
Confidence            99998765          3444444444433             7999999999999999999999998653

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. NDR1 is highly expressed in thymus, mus

>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.89  E-value=5.3e-24  Score=185.12  Aligned_cols=147  Identities=24%  Similarity=0.343  Sum_probs=122.8

Q ss_pred             CCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC---hhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEe
Q 047066          105 NYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY---QSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNE  180 (256)
Q Consensus       105 ~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e  180 (256)
                      .|.-++.||+|+||-||-++.. +...||||+..-..   ....+++++|+..|+.++|||.+.+.|++......|+|||
T Consensus        27 lf~dLrEIGHGSFGAVYfArd~~n~evVAIKKMsySGKQs~EKWqDIlKEVrFL~~l~HPntieYkgCyLre~TaWLVME  106 (948)
T KOG0577|consen   27 LFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDILKEVRFLRQLRHPNTIEYKGCYLREHTAWLVME  106 (948)
T ss_pred             HHHHHHHhcCCccceeEEeeccCccceeeeeeccccccccHHHHHHHHHHHHHHHhccCCCcccccceeeccchHHHHHH
Confidence            4666778999999999999964 67889999875433   2334789999999999999999999999999999999999


Q ss_pred             cCCC-----------------------CCCCHHHHHHHHHHHHhccCCCcEEEcCCCcEEEEecCCceecCCCCceeeee
Q 047066          181 FVKL-----------------------PTISWEVRIRIAAETAEDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTM  237 (256)
Q Consensus       181 ~~~~-----------------------~~l~~~~~~~~~~~i~rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~~  237 (256)
                      ||-|                       |.|.-...++--.-|+||||+.|||+++.|.|||+|||.|....+     .+.
T Consensus       107 YClGSAsDlleVhkKplqEvEIAAi~~gaL~gLaYLHS~~~IHRDiKAGNILLse~g~VKLaDFGSAsi~~P-----Ans  181 (948)
T KOG0577|consen  107 YCLGSASDLLEVHKKPLQEVEIAAITHGALQGLAYLHSHNRIHRDIKAGNILLSEPGLVKLADFGSASIMAP-----ANS  181 (948)
T ss_pred             HHhccHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhhHHhhhccccceEecCCCeeeeccccchhhcCc-----hhc
Confidence            9976                       334444555666678899999999999999999999999988654     345


Q ss_pred             eeecccc-------cccccCCCCCCC
Q 047066          238 VQGTLGY-------YLHTSQGTLNKE  256 (256)
Q Consensus       238 ~~Gt~~y-------~~~~~~~t~ksD  256 (256)
                      .+|||.|       ++..|+|+-|+|
T Consensus       182 FvGTPywMAPEVILAMDEGqYdgkvD  207 (948)
T KOG0577|consen  182 FVGTPYWMAPEVILAMDEGQYDGKVD  207 (948)
T ss_pred             ccCCccccchhHheeccccccCCccc
Confidence            6799998       777999999987

>cd05096 PTKc_DDR1 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1

Probab=99.89  E-value=2.6e-22  Score=169.65  Aligned_cols=155  Identities=19%  Similarity=0.354  Sum_probs=119.6

Q ss_pred             hcCCCcccceeeeeCceEEEEEEECC-----------------CcEEEEEEecccC-hhHHHHHHHHHHHHHhCCCCccc
Q 047066          102 ATNNYAYDRMIGRGGYGTVFLGSLSD-----------------NKAIAIKKSRIVY-QSQIEQCINKVVVLSQINHRNVV  163 (256)
Q Consensus       102 ~~~~~~~~~~lg~G~~g~V~~~~~~~-----------------~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv  163 (256)
                      +.++|.+.+.||+|+||.||+|.+++                 +..||+|.+.... ......+.+|+.++.+++||||+
T Consensus         3 ~~~~~~~~~~lg~G~fg~V~~~~~~~~~~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv   82 (304)
T cd05096           3 PRGHLLFKEKLGEGQFGEVHLCEVVNPQDLPTLQFPFNVRKGRPLLVAVKILRPDANKNARNDFLKEVKILSRLKDPNII   82 (304)
T ss_pred             chhhCeeeeEecccCCeEEEEEEeccCcccccccccccccCCcceEEEEEEecCCCCHHHHHHHHHHHHHHhhcCCCCee
Confidence            45688999999999999999997532                 3369999886543 44456799999999999999999


Q ss_pred             ceeeEEEECCEEEEEEecCCCCCCCH-----------------------------HHHHHHHHHHH-------------h
Q 047066          164 GLLGCCLETEVPLLVNEFVKLPTISW-----------------------------EVRIRIAAETA-------------E  201 (256)
Q Consensus       164 ~l~~~~~~~~~~~lv~e~~~~~~l~~-----------------------------~~~~~~~~~i~-------------r  201 (256)
                      ++++++...+..+++|||+++++|..                             .....++.|++             +
T Consensus        83 ~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~~ivH~  162 (304)
T cd05096          83 RLLGVCVDEDPLCMITEYMENGDLNQFLSSHHLDDKEENGNDAVPPAHCLPAISYSSLLHVALQIASGMKYLSSLNFVHR  162 (304)
T ss_pred             EEEEEEecCCceEEEEecCCCCcHHHHHHhccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHCCcccc
Confidence            99999999999999999999877632                             23344555554             6


Q ss_pred             ccCCCcEEEcCCCcEEEEecCCceecCCCCcee-eeeeeecccc----cccccCCCCCCC
Q 047066          202 DIKSINILLDDNYTTKVCDFGASKLVPIDETQL-STMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       202 dlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~-~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      ||||+|||+++++.+||+|||+++.+....... .....+++.|    .+..+.++.++|
T Consensus       163 dlkp~Nill~~~~~~kl~DfG~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~D  222 (304)
T cd05096         163 DLATRNCLVGENLTIKIADFGMSRNLYAGDYYRIQGRAVLPIRWMAWECILMGKFTTASD  222 (304)
T ss_pred             CcchhheEEcCCccEEECCCccceecccCceeEecCcCCCCccccCHHHHhcCCCCchhh
Confidence            999999999999999999999998765433221 1223356677    445677888877

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in k

>PTZ00263 protein kinase A catalytic subunit; Provisional

Probab=99.89  E-value=3.7e-22  Score=170.81  Aligned_cols=149  Identities=23%  Similarity=0.319  Sum_probs=120.1

Q ss_pred             CCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC---hhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEE
Q 047066          104 NNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY---QSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVN  179 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~  179 (256)
                      ++|++.+.||+|+||.||+|..+ +++.+|+|.+....   ....+.+.+|+.+++.++||||+++++.+...+..+++|
T Consensus        18 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~   97 (329)
T PTZ00263         18 SDFEMGETLGTGSFGRVRIAKHKGTGEYYAIKCLKKREILKMKQVQHVAQEKSILMELSHPFIVNMMCSFQDENRVYFLL   97 (329)
T ss_pred             hheEEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCCCcEEEEEEcCCEEEEEE
Confidence            57899999999999999999975 68899999876432   234467889999999999999999999999999999999


Q ss_pred             ecCCCCCC----------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceeee
Q 047066          180 EFVKLPTI----------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLST  236 (256)
Q Consensus       180 e~~~~~~l----------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~  236 (256)
                      ||+.+++|          +......++.|++             +||||+|||++.++.+||+|||+++......    .
T Consensus        98 e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivH~dlkp~NIll~~~~~~kl~Dfg~~~~~~~~~----~  173 (329)
T PTZ00263         98 EFVVGGELFTHLRKAGRFPNDVAKFYHAELVLAFEYLHSKDIIYRDLKPENLLLDNKGHVKVTDFGFAKKVPDRT----F  173 (329)
T ss_pred             cCCCCChHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeeecCCCHHHEEECCCCCEEEeeccCceEcCCCc----c
Confidence            99988765          3333333444433             7999999999999999999999998764332    2


Q ss_pred             eeeecccc----cccccCCCCCCC
Q 047066          237 MVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       237 ~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      ...||+.|    .+.+..++.++|
T Consensus       174 ~~~gt~~y~aPE~~~~~~~~~~~D  197 (329)
T PTZ00263        174 TLCGTPEYLAPEVIQSKGHGKAVD  197 (329)
T ss_pred             eecCChhhcCHHHHcCCCCCCcce
Confidence            34699999    556666788877

>cd05102 PTKc_VEGFR3 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3

Probab=99.89  E-value=1.4e-22  Score=173.76  Aligned_cols=158  Identities=25%  Similarity=0.385  Sum_probs=119.7

Q ss_pred             HHhhcCCCcccceeeeeCceEEEEEEE------CCCcEEEEEEecccC-hhHHHHHHHHHHHHHhC-CCCcccceeeEEE
Q 047066           99 LKIATNNYAYDRMIGRGGYGTVFLGSL------SDNKAIAIKKSRIVY-QSQIEQCINKVVVLSQI-NHRNVVGLLGCCL  170 (256)
Q Consensus        99 ~~~~~~~~~~~~~lg~G~~g~V~~~~~------~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~  170 (256)
                      |.++.++|++.+.||+|+||.||+|..      .++..||+|.+.... ......+.+|+.++..+ +||||+++++++.
T Consensus         2 ~~~~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~~~~~~~   81 (338)
T cd05102           2 WEFPRDRLRLGKVLGHGAFGKVVEASAFGIDKKSSCNTVAVKMLKEGATASEHKALMSELKILIHIGNHLNVVNLLGACT   81 (338)
T ss_pred             cccchhHceeeeEeccCCcceEEEEEEeccCCcccchhhheeccccccchHHHHHHHHHHHHHHHhccCcceeeEEeEec
Confidence            566778999999999999999999974      135679999886433 34456789999999999 8999999999987


Q ss_pred             EC-CEEEEEEecCCCCCCCHH-----------------------------------------------------------
Q 047066          171 ET-EVPLLVNEFVKLPTISWE-----------------------------------------------------------  190 (256)
Q Consensus       171 ~~-~~~~lv~e~~~~~~l~~~-----------------------------------------------------------  190 (256)
                      .. +..+++|||+++|+|...                                                           
T Consensus        82 ~~~~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (338)
T cd05102          82 KPNGPLMVIVEFCKYGNLSNFLRAKREFFSPYREKSPKQRGRFRAMVEQSRVDRRIEAGQASVLFSRFQPSTSGSTNPPQ  161 (338)
T ss_pred             CCCCceEEEEecCCCCcHHHHHHhcchhcccccccchhhhhhhhhhhhhhccccccccccCCccccccccccCcccccch
Confidence            64 468899999999876322                                                           


Q ss_pred             -------------HHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCcee-eeeeeeccc
Q 047066          191 -------------VRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQL-STMVQGTLG  243 (256)
Q Consensus       191 -------------~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~-~~~~~Gt~~  243 (256)
                                   ..+.++.|++             |||||+|||++.++.+||+|||+++.+..+.... .....+++.
T Consensus       162 ~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~~ivHrDiKp~Nil~~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~~~  241 (338)
T cd05102         162 ETDDLWKSPLTMEDLICYSFQVARGMEFLASRKCIHRDLAARNILLSENNVVKICDFGLARDIYKDPDYVRKGSARLPLK  241 (338)
T ss_pred             hccccccCCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCccceEEEcCCCcEEEeecccccccccCcchhcccCCCCCcc
Confidence                         2223344444             6999999999999999999999998764332221 122335667


Q ss_pred             c----cccccCCCCCCC
Q 047066          244 Y----YLHTSQGTLNKE  256 (256)
Q Consensus       244 y----~~~~~~~t~ksD  256 (256)
                      |    .+.+..++.++|
T Consensus       242 y~aPE~~~~~~~~~~sD  258 (338)
T cd05102         242 WMAPESIFDKVYTTQSD  258 (338)
T ss_pred             ccCcHHhhcCCCCcccC
Confidence            7    455677888887

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. V

>cd05600 STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases

Probab=99.88  E-value=4.3e-22  Score=170.57  Aligned_cols=149  Identities=23%  Similarity=0.335  Sum_probs=119.7

Q ss_pred             CCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC---hhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEE
Q 047066          104 NNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY---QSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVN  179 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~  179 (256)
                      ++|++.+.||+|+||.||+|... +++.||+|.+....   ....+.+.+|+.++..++||||+++++++...+..+++|
T Consensus         1 ~~y~~~~~ig~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~iv~~~~~~~~~~~~~lv~   80 (333)
T cd05600           1 KDFQILTQVGQGGYGQVFLAKKKDTGEIVALKRMKKSLLFKLNEVRHVLTERDILTTTKSEWLVKLLYAFQDDEYLYLAM   80 (333)
T ss_pred             CCcEEEEEEeecCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhCCCCCCccEEEEEEcCCEEEEEE
Confidence            36889999999999999999976 58899999886432   234467889999999999999999999999999999999


Q ss_pred             ecCCCCCCC----------HHHHHHHHHHH-------------HhccCCCcEEEcCCCcEEEEecCCceecCCCCceeee
Q 047066          180 EFVKLPTIS----------WEVRIRIAAET-------------AEDIKSINILLDDNYTTKVCDFGASKLVPIDETQLST  236 (256)
Q Consensus       180 e~~~~~~l~----------~~~~~~~~~~i-------------~rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~  236 (256)
                      ||+++++|.          +.....++.|+             |+||||+|||++.++.+||+|||+++....    ...
T Consensus        81 e~~~g~~L~~~l~~~~~l~~~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~Nil~~~~~~~kL~Dfg~a~~~~~----~~~  156 (333)
T cd05600          81 EYVPGGDFRTLLNNLGVLSEDHARFYMAEMFEAVDALHELGYIHRDLKPENFLIDASGHIKLTDFGLSKGIVT----YAN  156 (333)
T ss_pred             eCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCCHHHEEECCCCCEEEEeCcCCccccc----ccC
Confidence            999987753          33333344443             379999999999999999999999986543    123


Q ss_pred             eeeecccc----cccccCCCCCCC
Q 047066          237 MVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       237 ~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      ...||+.|    .+.+..++.++|
T Consensus       157 ~~~gt~~y~aPE~~~~~~~~~~~D  180 (333)
T cd05600         157 SVVGSPDYMAPEVLRGKGYDFTVD  180 (333)
T ss_pred             CcccCccccChhHhcCCCCCCccc
Confidence            34689999    556667888887

Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis.

>KOG0589 consensus Serine/threonine protein kinase [General function prediction only]

Probab=99.88  E-value=3.5e-23  Score=177.45  Aligned_cols=152  Identities=24%  Similarity=0.348  Sum_probs=125.4

Q ss_pred             CCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC--hhHHHHHHHHHHHHHhCCCCcccceeeEEEECCE-EEEEE
Q 047066          104 NNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY--QSQIEQCINKVVVLSQINHRNVVGLLGCCLETEV-PLLVN  179 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~-~~lv~  179 (256)
                      ++|...+++|+|+||.++.++.+ ++..+++|++....  ....+...+|+.++++++|||||.+.+.|..++. .+|+|
T Consensus         4 ~~Ye~~~~iG~GafG~a~lvrhk~~~~~~vlK~I~l~~~t~~~r~~A~~E~~lis~~~hP~iv~y~ds~~~~~~~l~Ivm   83 (426)
T KOG0589|consen    4 DNYEVLRQVGRGAFGSALLVRHKSDDKLYVLKKINLEKLTEPERRSAIQEMDLLSKLLHPNIVEYKDSFEEDGQLLCIVM   83 (426)
T ss_pred             chhhhhhhcCccccchhhhhhhccCCceEEEEEEeccccCchhhHHHHHHHHHHHhccCCCeeeeccchhcCCceEEEEE
Confidence            57899999999999999999865 67899999886543  3444578999999999999999999999998877 99999


Q ss_pred             ecCCCCCCCHHH------------HHHHH-------------HHHHhccCCCcEEEcCCCcEEEEecCCceecCCCCcee
Q 047066          180 EFVKLPTISWEV------------RIRIA-------------AETAEDIKSINILLDDNYTTKVCDFGASKLVPIDETQL  234 (256)
Q Consensus       180 e~~~~~~l~~~~------------~~~~~-------------~~i~rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~  234 (256)
                      +||+||++....            .+...             .-+|||||+.||+++.+..+||+|||+|+.+..+... 
T Consensus        84 ~Y~eGg~l~~~i~~~k~~~f~E~~i~~~~~Q~~~av~ylH~~~iLHRDlK~~Nifltk~~~VkLgDfGlaK~l~~~~~~-  162 (426)
T KOG0589|consen   84 EYCEGGDLAQLIKEQKGVLFPEERILKWFVQILLAVNYLHENRVLHRDLKCANIFLTKDKKVKLGDFGLAKILNPEDSL-  162 (426)
T ss_pred             eecCCCCHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhhhhhcccchhhhhhccccCceeecchhhhhhcCCchhh-
Confidence            999998863221            12222             2345899999999999999999999999998766533 


Q ss_pred             eeeeeecccc----cccccCCCCCCC
Q 047066          235 STMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       235 ~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      ..++.|||.|    .+.+.+|..|||
T Consensus       163 a~tvvGTp~YmcPEil~d~pYn~KSD  188 (426)
T KOG0589|consen  163 ASTVVGTPYYMCPEILSDIPYNEKSD  188 (426)
T ss_pred             hheecCCCcccCHHHhCCCCCCccCc
Confidence            4456799999    778889999998

>cd05599 STKc_NDR_like Catalytic domain of Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=99.88  E-value=4.9e-22  Score=172.20  Aligned_cols=125  Identities=26%  Similarity=0.311  Sum_probs=104.5

Q ss_pred             CCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC---hhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEE
Q 047066          104 NNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY---QSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVN  179 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~  179 (256)
                      ++|++.+.||+|+||.||++... +++.||+|.+....   ......+.+|+.++..++||||+++++++.+.+..+++|
T Consensus         1 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~l~h~~iv~~~~~~~~~~~~~lv~   80 (364)
T cd05599           1 DDFESIKVIGRGAFGEVRLVQKKDTGHIYAMKKLRKSEMLEKEQVAHVRAERDILAEADNPWVVKLYYSFQDENYLYLIM   80 (364)
T ss_pred             CCceEEEEEEecCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCcceEEEEEcCCeEEEEE
Confidence            46889999999999999999975 68899999886432   334456788999999999999999999999999999999


Q ss_pred             ecCCCCCC----------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecC
Q 047066          180 EFVKLPTI----------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVP  228 (256)
Q Consensus       180 e~~~~~~l----------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~  228 (256)
                      ||+++++|          +......++.|++             |||||+|||++.++.+||+|||+++.+.
T Consensus        81 E~~~~g~L~~~l~~~~~l~~~~~~~~~~qi~~aL~~lH~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~  152 (364)
T cd05599          81 EYLPGGDMMTLLMKKDTFTEEETRFYIAETILAIDSIHKLGYIHRDIKPDNLLLDAKGHIKLSDFGLCTGLK  152 (364)
T ss_pred             CCCCCcHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeEeccCCHHHeEECCCCCEEEeecccceecc
Confidence            99988655          4444444555544             6999999999999999999999997653

Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related (NDR) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. NDR kinases regulate mitosis, cell growth, embryonic development, and neurological processes. They are also required for proper centrosome duplica

>cd05626 STKc_LATS2 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 2

Probab=99.88  E-value=4.6e-22  Score=173.54  Aligned_cols=123  Identities=22%  Similarity=0.245  Sum_probs=101.8

Q ss_pred             CCcccceeeeeCceEEEEEEEC-CCcEEEEEEeccc---ChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEe
Q 047066          105 NYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIV---YQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNE  180 (256)
Q Consensus       105 ~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e  180 (256)
                      .|+..+.||+|+||+||+|... ++..+|+|.+...   .....+.+.+|+.+++.++||||+++++++.+.+..+++||
T Consensus         2 ~f~~~~~LG~G~~g~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~il~~l~h~~iv~l~~~~~~~~~~~lv~E   81 (381)
T cd05626           2 MFVKIKTLGIGAFGEVCLACKVDTHALYAMKTLRKKDVLNRNQVAHVKAERDILAEADNEWVVKLYYSFQDKDNLYFVMD   81 (381)
T ss_pred             CceEEEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhcCCCCeeeeEEEEecCCEEEEEEe
Confidence            5788899999999999999864 6889999988643   23445678999999999999999999999999999999999


Q ss_pred             cCCCCCCC----------HHHHHHHHHHH-------------HhccCCCcEEEcCCCcEEEEecCCceec
Q 047066          181 FVKLPTIS----------WEVRIRIAAET-------------AEDIKSINILLDDNYTTKVCDFGASKLV  227 (256)
Q Consensus       181 ~~~~~~l~----------~~~~~~~~~~i-------------~rdlk~~NiLi~~~~~~ki~DFGla~~~  227 (256)
                      |+++|+|.          +.....++.|+             ||||||+|||++.++.+||+|||+++.+
T Consensus        82 ~~~gg~L~~~l~~~~~~~e~~~~~~~~qi~~aL~~LH~~givHrDlKp~Nili~~~~~~kL~DFGl~~~~  151 (381)
T cd05626          82 YIPGGDMMSLLIRMEVFPEVLARFYIAELTLAIESVHKMGFIHRDIKPDNILIDLDGHIKLTDFGLCTGF  151 (381)
T ss_pred             cCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeeecCCcHHHEEECCCCCEEEeeCcCCccc
Confidence            99987753          33333333333             3799999999999999999999998643

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. LATS2 is an essential mitotic regulator responsible for coordinating accurate cytokinesis completion and governing the stabilization of other mitotic regulators. It is also critical in the maintenance of proper chromosome number, genomic stability, mitotic fidelity, and the integrity of centrosome duplication. Downregulation of LATS2 is associated with po

>KOG0585 consensus Ca2+/calmodulin-dependent protein kinase kinase beta and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.88  E-value=6.2e-23  Score=174.38  Aligned_cols=143  Identities=31%  Similarity=0.430  Sum_probs=111.7

Q ss_pred             hhcCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC--------------hhHHHHHHHHHHHHHhCCCCcccce
Q 047066          101 IATNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY--------------QSQIEQCINKVVVLSQINHRNVVGL  165 (256)
Q Consensus       101 ~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--------------~~~~~~~~~E~~~l~~l~h~niv~l  165 (256)
                      ...+.|++.+.||+|.||.|-+++.. +++.||+|++....              ....+...+|+.+|++++|||||+|
T Consensus        94 k~lNqy~l~~eiG~G~yGkVkLar~~~~~~l~AiKil~K~~~~~~~~~~~~~a~~~~~~ekv~~EIailKkl~H~nVV~L  173 (576)
T KOG0585|consen   94 KQLNQYELIKEIGSGQYGKVKLARDEVDGKLYAIKILPKKELRRQYGFPRQPAMKLMPIEKVRREIAILKKLHHPNVVKL  173 (576)
T ss_pred             eehhheehhhhhcCCccceEEEEeecCCCcEEEEEeechhhhhhhcccccccccccCcHHHHHHHHHHHHhcCCcCeeEE
Confidence            34468999999999999999999964 78999999875321              1123578999999999999999999


Q ss_pred             eeEEEE--CCEEEEEEecCCCCCCCH----------HHH-------------HHHHHHHHhccCCCcEEEcCCCcEEEEe
Q 047066          166 LGCCLE--TEVPLLVNEFVKLPTISW----------EVR-------------IRIAAETAEDIKSINILLDDNYTTKVCD  220 (256)
Q Consensus       166 ~~~~~~--~~~~~lv~e~~~~~~l~~----------~~~-------------~~~~~~i~rdlk~~NiLi~~~~~~ki~D  220 (256)
                      +++..+  .+.+|||+|||..|.+.|          .+.             +|....|||||||+|+|++++|++||+|
T Consensus       174 iEvLDDP~s~~~YlVley~s~G~v~w~p~d~~els~~~Ar~ylrDvv~GLEYLH~QgiiHRDIKPsNLLl~~~g~VKIsD  253 (576)
T KOG0585|consen  174 IEVLDDPESDKLYLVLEYCSKGEVKWCPPDKPELSEQQARKYLRDVVLGLEYLHYQGIIHRDIKPSNLLLSSDGTVKISD  253 (576)
T ss_pred             EEeecCcccCceEEEEEeccCCccccCCCCcccccHHHHHHHHHHHHHHHHHHHhcCeeccccchhheEEcCCCcEEeec
Confidence            999876  567999999998877533          333             3444456799999999999999999999


Q ss_pred             cCCceecCCC-----Cceeeeeeeecccc
Q 047066          221 FGASKLVPID-----ETQLSTMVQGTLGY  244 (256)
Q Consensus       221 FGla~~~~~~-----~~~~~~~~~Gt~~y  244 (256)
                      ||.+......     +.... ...|||.|
T Consensus       254 FGVs~~~~~~~~~~~d~~L~-~tvGTPAF  281 (576)
T KOG0585|consen  254 FGVSNEFPQGSDEGSDDQLS-RTVGTPAF  281 (576)
T ss_pred             cceeeecccCCccccHHHHh-hcCCCccc
Confidence            9999876221     11212 24699998

>PTZ00426 cAMP-dependent protein kinase catalytic subunit; Provisional

Probab=99.88  E-value=4.7e-22  Score=170.92  Aligned_cols=151  Identities=28%  Similarity=0.371  Sum_probs=119.5

Q ss_pred             hcCCCcccceeeeeCceEEEEEEECC--CcEEEEEEeccc---ChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEE
Q 047066          102 ATNNYAYDRMIGRGGYGTVFLGSLSD--NKAIAIKKSRIV---YQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPL  176 (256)
Q Consensus       102 ~~~~~~~~~~lg~G~~g~V~~~~~~~--~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~  176 (256)
                      ..++|++.+.||+|+||.||+|..+.  +..+|+|.+...   .....+.+.+|+.+++.++||||+++++++.+.+..+
T Consensus        28 ~~~~y~~~~~ig~G~~g~Vy~a~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~~~  107 (340)
T PTZ00426         28 KYEDFNFIRTLGTGSFGRVILATYKNEDFPPVAIKRFEKSKIIKQKQVDHVFSERKILNYINHPFCVNLYGSFKDESYLY  107 (340)
T ss_pred             ChhhcEEEEEEeecCCeEEEEEEEECCCCeEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCCcceEEEEEeCCEEE
Confidence            34678999999999999999998543  368999987532   2334567889999999999999999999999999999


Q ss_pred             EEEecCCCCCCC----------HHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCce
Q 047066          177 LVNEFVKLPTIS----------WEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQ  233 (256)
Q Consensus       177 lv~e~~~~~~l~----------~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~  233 (256)
                      ++|||+++++|.          +.....++.|++             |||||+|||++.++.+||+|||+++.+...   
T Consensus       108 lv~Ey~~~g~L~~~i~~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDLkp~NILl~~~~~ikL~DFG~a~~~~~~---  184 (340)
T PTZ00426        108 LVLEFVIGGEFFTFLRRNKRFPNDVGCFYAAQIVLIFEYLQSLNIVYRDLKPENLLLDKDGFIKMTDFGFAKVVDTR---  184 (340)
T ss_pred             EEEeCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeEccCCCHHHEEECCCCCEEEecCCCCeecCCC---
Confidence            999999987753          333344444433             799999999999999999999999876432   


Q ss_pred             eeeeeeecccc----cccccCCCCCCC
Q 047066          234 LSTMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       234 ~~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                       .....||+.|    .+.+..++.++|
T Consensus       185 -~~~~~gt~~y~aPE~~~~~~~~~~~D  210 (340)
T PTZ00426        185 -TYTLCGTPEYIAPEILLNVGHGKAAD  210 (340)
T ss_pred             -cceecCChhhcCHHHHhCCCCCcccc
Confidence             2235699999    555666777777

>cd05622 STKc_ROCK1 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1

Probab=99.88  E-value=5.6e-22  Score=172.36  Aligned_cols=160  Identities=22%  Similarity=0.241  Sum_probs=123.2

Q ss_pred             HHHHhhcCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEeccc---ChhHHHHHHHHHHHHHhCCCCcccceeeEEEEC
Q 047066           97 GELKIATNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIV---YQSQIEQCINKVVVLSQINHRNVVGLLGCCLET  172 (256)
Q Consensus        97 ~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~  172 (256)
                      .+.....++|++.+.||+|+||.||++..+ +++.+|+|.+...   .......+.+|..+++.++||||+++++.+...
T Consensus        36 ~~~~~~~~~y~i~~~lG~G~fg~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~e~~i~~~~~hp~iv~~~~~~~~~  115 (371)
T cd05622          36 RDLRMKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFYAFQDD  115 (371)
T ss_pred             hhcCcchhhcEEEEEEeecCCeEEEEEEECCCCcEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCCeEEEEEEcC
Confidence            344555689999999999999999999976 6789999987532   223345678899999999999999999999999


Q ss_pred             CEEEEEEecCCCCCCC---------HHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCC
Q 047066          173 EVPLLVNEFVKLPTIS---------WEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPID  230 (256)
Q Consensus       173 ~~~~lv~e~~~~~~l~---------~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~  230 (256)
                      +..+++|||+++++|.         ......++.|++             |||||+|||++.++.+||+|||+++.+...
T Consensus       116 ~~~~lv~Ey~~gg~L~~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDLkp~NIll~~~~~ikL~DfG~a~~~~~~  195 (371)
T cd05622         116 RYLYMVMEYMPGGDLVNLMSNYDVPEKWARFYTAEVVLALDAIHSMGFIHRDVKPDNMLLDKSGHLKLADFGTCMKMNKE  195 (371)
T ss_pred             CEEEEEEcCCCCCcHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHCCEEeCCCCHHHEEECCCCCEEEEeCCceeEcCcC
Confidence            9999999999998763         222333333333             799999999999999999999999887544


Q ss_pred             Cceeeeeeeecccc----cccc----cCCCCCCC
Q 047066          231 ETQLSTMVQGTLGY----YLHT----SQGTLNKE  256 (256)
Q Consensus       231 ~~~~~~~~~Gt~~y----~~~~----~~~t~ksD  256 (256)
                      ........+||+.|    .+..    +.++.++|
T Consensus       196 ~~~~~~~~~gt~~y~aPE~l~~~~~~~~~~~~~D  229 (371)
T cd05622         196 GMVRCDTAVGTPDYISPEVLKSQGGDGYYGRECD  229 (371)
T ss_pred             CcccccCcccCccccCHHHHhccCCCccCCCccc
Confidence            33333445699999    2222    23777877

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, an

>KOG4278 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=99.88  E-value=2.4e-23  Score=182.00  Aligned_cols=160  Identities=22%  Similarity=0.367  Sum_probs=133.6

Q ss_pred             hHHHHhhcCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCE
Q 047066           96 AGELKIATNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEV  174 (256)
Q Consensus        96 ~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~  174 (256)
                      .++|+..+.++...+.||-|-||.||.|.|+ ....||||.++... ...++|++|+.+|+.++|||+|+|+|+|.....
T Consensus       259 ~DkWEmeRtdItMkhKLGGGQYGeVYeGvWKkyslTvAVKtLKEDt-MeveEFLkEAAvMKeikHpNLVqLLGVCT~EpP  337 (1157)
T KOG4278|consen  259 ADKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDT-MEVEEFLKEAAVMKEIKHPNLVQLLGVCTHEPP  337 (1157)
T ss_pred             cchhhccchheeeeeccCCCcccceeeeeeeccceeeehhhhhhcc-hhHHHHHHHHHHHHhhcCccHHHHhhhhccCCC
Confidence            4789999999999999999999999999986 47899999987543 456899999999999999999999999999999


Q ss_pred             EEEEEecCCCCCCCHHH------------HHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCC
Q 047066          175 PLLVNEFVKLPTISWEV------------RIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPI  229 (256)
Q Consensus       175 ~~lv~e~~~~~~l~~~~------------~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~  229 (256)
                      +|||+|||.+|+|-...            .+.++.||+             |||.++|+|+.++..||++||||++.+..
T Consensus       338 FYIiTEfM~yGNLLdYLRecnr~ev~avvLlyMAtQIsSaMeYLEkknFIHRDLAARNCLVgEnhiVKvADFGLsRlMtg  417 (1157)
T KOG4278|consen  338 FYIITEFMCYGNLLDYLRECNRSEVPAVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHIVKVADFGLSRLMTG  417 (1157)
T ss_pred             eEEEEecccCccHHHHHHHhchhhcchhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhccccccceEEeeccchhhhhcC
Confidence            99999999998874332            345555544             89999999999999999999999999987


Q ss_pred             CCceeeeeeeecccc----cccccCCCCCCC
Q 047066          230 DETQLSTMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       230 ~~~~~~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      +....+....-.+.|    -+..+.|+.|||
T Consensus       418 DTYTAHAGAKFPIKWTAPEsLAyNtFSiKSD  448 (1157)
T KOG4278|consen  418 DTYTAHAGAKFPIKWTAPESLAYNTFSIKSD  448 (1157)
T ss_pred             CceecccCccCcccccCcccccccccccchh
Confidence            766655444444455    455677888887

>cd05624 STKc_MRCK_beta Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase beta

Probab=99.88  E-value=9.5e-22  Score=168.41  Aligned_cols=153  Identities=22%  Similarity=0.241  Sum_probs=119.2

Q ss_pred             CCCcccceeeeeCceEEEEEEEC-CCcEEEEEEeccc---ChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEE
Q 047066          104 NNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIV---YQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVN  179 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~  179 (256)
                      ++|++.+.||+|+||.||+++.+ +++.+|+|.+...   .......+.+|..++..++|+||+++++++.+.+..+++|
T Consensus         1 d~y~i~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~l~~~~~~~~~~~lv~   80 (331)
T cd05624           1 DDFEIIKVIGRGAFGEVAVVKMKHTERIYAMKILNKWEMLKRAETACFREERNVLVNGDCQWITTLHYAFQDENYLYLVM   80 (331)
T ss_pred             CCceEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeHHHHHhhHHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCEEEEEE
Confidence            46889999999999999999975 5788999987542   2233456788999999999999999999999999999999


Q ss_pred             ecCCCCCCC-----------HHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceee
Q 047066          180 EFVKLPTIS-----------WEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLS  235 (256)
Q Consensus       180 e~~~~~~l~-----------~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~  235 (256)
                      ||+.+|+|.           +.....++.|++             |||||+|||++.++.+||+|||+++.+..+.....
T Consensus        81 Ey~~gg~L~~~l~~~~~~l~~~~~~~~~~qi~~~L~~lH~~~iiHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~~~~~~  160 (331)
T cd05624          81 DYYVGGDLLTLLSKFEDRLPEDMARFYIAEMVLAIHSIHQLHYVHRDIKPDNVLLDMNGHIRLADFGSCLKMNQDGTVQS  160 (331)
T ss_pred             eCCCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeeeccCchHHEEEcCCCCEEEEeccceeeccCCCceee
Confidence            999987663           223333343433             69999999999999999999999987765443333


Q ss_pred             eeeeecccc----cccc-----cCCCCCCC
Q 047066          236 TMVQGTLGY----YLHT-----SQGTLNKE  256 (256)
Q Consensus       236 ~~~~Gt~~y----~~~~-----~~~t~ksD  256 (256)
                      ....||+.|    .+.+     +.++.++|
T Consensus       161 ~~~~gt~~y~aPE~~~~~~~~~~~~~~~~D  190 (331)
T cd05624         161 SVAVGTPDYISPEILQAMEDGMGKYGPECD  190 (331)
T ss_pred             ccccCCcccCCHHHHhccccCCCCCCCccc
Confidence            445699999    3322     46777777

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) beta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKbeta is expressed ubiquitously in many tissues.

>cd05625 STKc_LATS1 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 1

Probab=99.88  E-value=6.7e-22  Score=172.54  Aligned_cols=122  Identities=22%  Similarity=0.264  Sum_probs=101.0

Q ss_pred             CCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC---hhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEe
Q 047066          105 NYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY---QSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNE  180 (256)
Q Consensus       105 ~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e  180 (256)
                      .|+..+.||+|+||.||+|... +++.+|+|.+....   ....+.+.+|+.+++.++||||+++++.+.+.+..++|||
T Consensus         2 ~f~~~~~LG~G~~g~Vy~a~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~il~~~~h~~iv~~~~~~~~~~~~~lv~E   81 (382)
T cd05625           2 MFVKIKTLGIGAFGEVCLARKVDTKALYAMKTLRKKDVLLRNQVAHVKAERDILAEADNEWVVRLYYSFQDKDNLYFVMD   81 (382)
T ss_pred             CcEEEEEEEeCCCEEEEEEEECCCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHhCCCCcCCeEEEEEEeCCEEEEEEe
Confidence            5788899999999999999965 68899999886432   3345678899999999999999999999999999999999


Q ss_pred             cCCCCCCC----------HHHHHHHHHHH-------------HhccCCCcEEEcCCCcEEEEecCCcee
Q 047066          181 FVKLPTIS----------WEVRIRIAAET-------------AEDIKSINILLDDNYTTKVCDFGASKL  226 (256)
Q Consensus       181 ~~~~~~l~----------~~~~~~~~~~i-------------~rdlk~~NiLi~~~~~~ki~DFGla~~  226 (256)
                      |+++|+|.          ......++.|+             ||||||+|||++.++.+||+|||+|+.
T Consensus        82 ~~~gg~L~~~l~~~~~~~e~~~~~~~~qi~~al~~lH~~~ivHrDlKp~NILl~~~g~~kL~DFGla~~  150 (382)
T cd05625          82 YIPGGDMMSLLIRMGIFPEDLARFYIAELTCAVESVHKMGFIHRDIKPDNILIDRDGHIKLTDFGLCTG  150 (382)
T ss_pred             CCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEECCCCCEEEeECCCCcc
Confidence            99987753          22223333333             379999999999999999999999864

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. Promoter methylation, loss of heterozygosity, and missense mutations targeting the LATS1 gene have also been found in human sarcomas and ovarian cancers. In addition, decreased expression of LATS1 is associated with an aggressive phenotype an

>cd05571 STKc_PKB Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B

Probab=99.88  E-value=1e-21  Score=167.55  Aligned_cols=146  Identities=22%  Similarity=0.248  Sum_probs=115.1

Q ss_pred             ceeeeeCceEEEEEEEC-CCcEEEEEEeccc---ChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEecCCCC
Q 047066          110 RMIGRGGYGTVFLGSLS-DNKAIAIKKSRIV---YQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEFVKLP  185 (256)
Q Consensus       110 ~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~~~  185 (256)
                      +.||+|+||.||++..+ +++.+|+|.++..   .......+.+|+.+++.++||||+++.+.+...+..+++|||+.++
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~~~~~lv~e~~~~~   80 (323)
T cd05571           1 KLLGKGTFGKVILVREKATGKYYAMKILKKEVIIAKDEVAHTLTESRVLQNTRHPFLTALKYSFQTHDRLCFVMEYANGG   80 (323)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCCCEEEEEEcCCEEEEEEeCCCCC
Confidence            46999999999999865 6889999988643   2334467889999999999999999999999999999999999987


Q ss_pred             CC----------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceeeeeeeecc
Q 047066          186 TI----------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTL  242 (256)
Q Consensus       186 ~l----------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~~~~Gt~  242 (256)
                      +|          ++.....++.|++             |||||+|||++.++.+||+|||+++....... .....+||+
T Consensus        81 ~L~~~l~~~~~~~~~~~~~~~~qi~~~L~~lH~~~ivHrDlkp~NIll~~~~~~kl~DfG~a~~~~~~~~-~~~~~~gt~  159 (323)
T cd05571          81 ELFFHLSRERVFSEDRARFYGAEIVSALGYLHSCDVVYRDLKLENLMLDKDGHIKITDFGLCKEGISDGA-TMKTFCGTP  159 (323)
T ss_pred             cHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhCCeEeCCCCHHHEEECCCCCEEEeeCCCCcccccCCC-cccceecCc
Confidence            75          3333444444444             69999999999999999999999986432221 123456999


Q ss_pred             cc----cccccCCCCCCC
Q 047066          243 GY----YLHTSQGTLNKE  256 (256)
Q Consensus       243 ~y----~~~~~~~t~ksD  256 (256)
                      .|    .+.+..++.++|
T Consensus       160 ~y~aPE~~~~~~~~~~~D  177 (323)
T cd05571         160 EYLAPEVLEDNDYGRAVD  177 (323)
T ss_pred             cccChhhhcCCCCCcccc
Confidence            99    555667788887

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having be

>cd05629 STKc_NDR_like_fungal Catalytic domain of Fungal Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=99.88  E-value=7.7e-22  Score=171.84  Aligned_cols=123  Identities=27%  Similarity=0.299  Sum_probs=101.8

Q ss_pred             CCCcccceeeeeCceEEEEEEEC-CCcEEEEEEeccc---ChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEE
Q 047066          104 NNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIV---YQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVN  179 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~  179 (256)
                      ++|++.+.||+|+||.||++... +++.||+|.+...   .....+.+.+|+++++.++||||+++++++.+.+..++||
T Consensus         1 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~l~hp~iv~~~~~~~~~~~~~lv~   80 (377)
T cd05629           1 EDFHTVKVIGKGAFGEVRLVQKKDTGKIYAMKTLLKSEMFKKDQLAHVKAERDVLAESDSPWVVSLYYSFQDAQYLYLIM   80 (377)
T ss_pred             CCceEeEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHHHHhHHHHHHHHHHHHHHhCCCCCcceEEEEEEcCCeeEEEE
Confidence            36888999999999999999865 6889999987542   2334467889999999999999999999999999999999


Q ss_pred             ecCCCCCCC----------HHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCcee
Q 047066          180 EFVKLPTIS----------WEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKL  226 (256)
Q Consensus       180 e~~~~~~l~----------~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~  226 (256)
                      ||+++++|.          ......++.|++             |||||+|||++.++.+||+|||+|+.
T Consensus        81 E~~~gg~L~~~l~~~~~~~~~~~~~~~~ql~~aL~~LH~~givHrDlkp~NIll~~~~~~kl~DfGla~~  150 (377)
T cd05629          81 EFLPGGDLMTMLIKYDTFSEDVTRFYMAECVLAIEAVHKLGFIHRDIKPDNILIDRGGHIKLSDFGLSTG  150 (377)
T ss_pred             eCCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHHHEEECCCCCEEEeecccccc
Confidence            999987763          222333344433             79999999999999999999999964

Serine/Threonine Kinases (STKs), NDR kinase subfamily, fungal NDR-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group is composed of fungal NDR-like proteins including Saccharomyces cerevisiae CBK1 (or CBK1p), Schizosaccharomyces pombe Orb6 (or Orb6p), Ustilago maydis Ukc1 (or Ukc1p), and Neurospora crassa Cot1. Like NDR kinase, group members contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. CBK1 is an essential component in the RAM (regulation of

>cd05597 STKc_DMPK_like Catalytic domain of Myotonic Dystrophy protein kinase-like Protein Serine/Threonine Kinases

Probab=99.88  E-value=1.4e-21  Score=167.31  Aligned_cols=153  Identities=22%  Similarity=0.252  Sum_probs=119.7

Q ss_pred             CCCcccceeeeeCceEEEEEEEC-CCcEEEEEEeccc---ChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEE
Q 047066          104 NNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIV---YQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVN  179 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~  179 (256)
                      ++|++.+.||+|+||.||++... +++.+|+|.+...   .....+.+.+|..++..++|+||+++++++.+.+..++||
T Consensus         1 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~   80 (331)
T cd05597           1 DDFEILKVIGRGAFGEVAVVKMKNTGQVYAMKILNKWEMLKRAETACFREERDVLVNGDRRWITNLHYAFQDENNLYLVM   80 (331)
T ss_pred             CCceEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCCCceEEEEecCCeEEEEE
Confidence            46889999999999999999965 5889999988642   2234456888999999999999999999999999999999


Q ss_pred             ecCCCCCCC-----------HHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceee
Q 047066          180 EFVKLPTIS-----------WEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLS  235 (256)
Q Consensus       180 e~~~~~~l~-----------~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~  235 (256)
                      ||+++++|.           ......++.|++             |||||+|||++.++.+||+|||++..+........
T Consensus        81 e~~~g~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~  160 (331)
T cd05597          81 DYYVGGDLLTLLSKFEDRLPEDMARFYLAEMVLAIDSVHQLGYVHRDIKPDNVLLDKNGHIRLADFGSCLRLLADGTVQS  160 (331)
T ss_pred             ecCCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeEECCCCHHHEEECCCCCEEEEECCceeecCCCCCccc
Confidence            999887763           233344444444             69999999999999999999999987654433333


Q ss_pred             eeeeecccc----ccc-----ccCCCCCCC
Q 047066          236 TMVQGTLGY----YLH-----TSQGTLNKE  256 (256)
Q Consensus       236 ~~~~Gt~~y----~~~-----~~~~t~ksD  256 (256)
                      ....||+.|    .+.     .+.++.++|
T Consensus       161 ~~~~gt~~y~aPE~~~~~~~~~~~~~~~~D  190 (331)
T cd05597         161 NVAVGTPDYISPEILQAMEDGKGRYGPECD  190 (331)
T ss_pred             cceeccccccCHHHHhhccccccCCCCcce
Confidence            345699999    222     245677777

Serine/Threonine Kinases (STKs), Myotonic Dystrophy protein kinase (DMPK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The DMPK-like subfamily is composed of DMPK and DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK). Three isoforms of MRCK are known, named alpha, beta and gamma. The DMPK gene is implicated in myotonic dystrophy 1 (DM1), an inherited multisystemic disorder with symptoms that include muscle hyperexcitability, progressive muscle weakness and wasting, cataract development, testicular atrophy,

>cd07848 STKc_CDKL5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase Like 5

Probab=99.88  E-value=8.5e-22  Score=165.01  Aligned_cols=153  Identities=23%  Similarity=0.267  Sum_probs=122.0

Q ss_pred             CCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC--hhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEe
Q 047066          104 NNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY--QSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNE  180 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e  180 (256)
                      ++|++.+.||+|+||.||++..+ +++.+|+|.+....  ....+.+.+|+.+++.++||||+++++++...+..+++||
T Consensus         1 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e   80 (287)
T cd07848           1 NKFEVLGVVGEGAYGVVLKCRHKETKEIVAIKKFKDSEENEEVKETTLRELKMLRTLKQENIVELKEAFRRRGKLYLVFE   80 (287)
T ss_pred             CCceEEEEecccCCEEEEEEEECCCCcEEEEEEEecccccccchhhHHHHHHHHHhCCCccccchhhhEecCCEEEEEEe
Confidence            36888999999999999999976 57889999876432  3344678899999999999999999999999999999999


Q ss_pred             cCCCCC----------CCHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceeeee
Q 047066          181 FVKLPT----------ISWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTM  237 (256)
Q Consensus       181 ~~~~~~----------l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~~  237 (256)
                      |++++.          +++.....++.|++             +||||+||+++.++.+||+|||+++.+..........
T Consensus        81 ~~~~~~l~~~~~~~~~~~~~~~~~~~~qi~~~L~~lH~~~i~H~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~  160 (287)
T cd07848          81 YVEKNMLELLEEMPNGVPPEKVRSYIYQLIKAIHWCHKNDIVHRDIKPENLLISHNDVLKLCDFGFARNLSEGSNANYTE  160 (287)
T ss_pred             cCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEEcCCCcEEEeeccCcccccccccccccc
Confidence            998764          34444455555544             6999999999999999999999998875433333334


Q ss_pred             eeecccc----cccccCCCCCCC
Q 047066          238 VQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       238 ~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      ..||+.|    .+.+..++.++|
T Consensus       161 ~~~~~~y~aPE~~~~~~~~~~~D  183 (287)
T cd07848         161 YVATRWYRSPELLLGAPYGKAVD  183 (287)
T ss_pred             cccccccCCcHHHcCCCCCCchh
Confidence            5689988    555667888877

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 5 (CDKL5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Mutations in the gene encoding CDKL5, previously called STK9, are associated with early onset epilepsy and severe mental retardation [X-linked infantile spasm syndrome (ISSX) or West syndrome]. In addition, CDKL5 mutations also sometimes

>KOG0193 consensus Serine/threonine protein kinase RAF [Signal transduction mechanisms]

Probab=99.88  E-value=1.9e-22  Score=175.85  Aligned_cols=130  Identities=26%  Similarity=0.483  Sum_probs=110.7

Q ss_pred             cChHHHHhhcCCCcccceeeeeCceEEEEEEECCCcEEEEEEecccC--hhHHHHHHHHHHHHHhCCCCcccceeeEEEE
Q 047066           94 FTAGELKIATNNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVY--QSQIEQCINKVVVLSQINHRNVVGLLGCCLE  171 (256)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~  171 (256)
                      ....+|+++.+.+.+...||+|+||+||+|+|.+  .||||.+....  ++..+.|.+|+..+++-+|.||+-++|+|..
T Consensus       382 ~s~~~WeIp~~ev~l~~rIGsGsFGtV~Rg~whG--dVAVK~Lnv~~pt~~qlqaFKnEVa~lkkTRH~NIlLFMG~~~~  459 (678)
T KOG0193|consen  382 DSLEEWEIPPEEVLLGERIGSGSFGTVYRGRWHG--DVAVKLLNVDDPTPEQLQAFKNEVAVLKKTRHENILLFMGACMN  459 (678)
T ss_pred             ccccccccCHHHhhccceeccccccceeeccccc--ceEEEEEecCCCCHHHHHHHHHHHHHHhhcchhhheeeehhhcC
Confidence            3347899999999999999999999999999843  59999886544  5577899999999999999999999999998


Q ss_pred             CCEEEEEEecCCCCCCC-----------HHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCcee
Q 047066          172 TEVPLLVNEFVKLPTIS-----------WEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKL  226 (256)
Q Consensus       172 ~~~~~lv~e~~~~~~l~-----------~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~  226 (256)
                      ++. .||+.+|++.+|-           -...+.|+.|||             ||||..||++.++++|||+||||+..
T Consensus       460 p~~-AIiTqwCeGsSLY~hlHv~etkfdm~~~idIAqQiaqGM~YLHAK~IIHrDLKSnNIFl~~~~kVkIgDFGLatv  537 (678)
T KOG0193|consen  460 PPL-AIITQWCEGSSLYTHLHVQETKFDMNTTIDIAQQIAQGMDYLHAKNIIHRDLKSNNIFLHEDLKVKIGDFGLATV  537 (678)
T ss_pred             Cce-eeeehhccCchhhhhccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccccceEEccCCcEEEecccceee
Confidence            877 9999999998862           223355555555             79999999999999999999999853

>cd05631 STKc_GRK4 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 4

Probab=99.88  E-value=1.3e-21  Score=164.05  Aligned_cols=150  Identities=27%  Similarity=0.360  Sum_probs=119.1

Q ss_pred             CCcccceeeeeCceEEEEEEE-CCCcEEEEEEecccC---hhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEe
Q 047066          105 NYAYDRMIGRGGYGTVFLGSL-SDNKAIAIKKSRIVY---QSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNE  180 (256)
Q Consensus       105 ~~~~~~~lg~G~~g~V~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e  180 (256)
                      +|+..+.||+|+||.||++.. .+++.+|+|.+....   ......+.+|+.++..++|+|++++.+++.+.+..+++||
T Consensus         1 ~f~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~iv~~~~~~~~~~~~~lv~e   80 (285)
T cd05631           1 TFRHYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKRILEKVNSRFVVSLAYAYETKDALCLVLT   80 (285)
T ss_pred             CceEEEEEecCCCEEEEEEEEecCCceEEEEEeeHhhhhhhhhHHHHHHHHHHHHhcCCCcEEEEEEEEccCCeEEEEEE
Confidence            367788999999999999986 478999999875432   2233467899999999999999999999999999999999


Q ss_pred             cCCCCCCC------------HHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceee
Q 047066          181 FVKLPTIS------------WEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLS  235 (256)
Q Consensus       181 ~~~~~~l~------------~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~  235 (256)
                      |+++++|.            +.....++.|++             |||||+|||+++++.+||+|||++........  .
T Consensus        81 ~~~~g~L~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~iiH~dikp~Nill~~~~~~kl~Dfg~~~~~~~~~~--~  158 (285)
T cd05631          81 IMNGGDLKFHIYNMGNPGFDEQRAIFYAAELCCGLEDLQRERIVYRDLKPENILLDDRGHIRISDLGLAVQIPEGET--V  158 (285)
T ss_pred             ecCCCcHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhCCEEeCCCCHHHEEECCCCCEEEeeCCCcEEcCCCCe--e
Confidence            99987762            333444454543             69999999999999999999999987643322  2


Q ss_pred             eeeeecccc----cccccCCCCCCC
Q 047066          236 TMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       236 ~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      ....||+.|    .+.+..++.++|
T Consensus       159 ~~~~g~~~y~aPE~~~~~~~~~~~D  183 (285)
T cd05631         159 RGRVGTVGYMAPEVINNEKYTFSPD  183 (285)
T ss_pred             cCCCCCCCccCHhhhcCCCCCcccC
Confidence            334589999    566778888887

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found i

>cd05595 STKc_PKB_beta Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B beta

Probab=99.87  E-value=9.3e-22  Score=167.90  Aligned_cols=146  Identities=23%  Similarity=0.259  Sum_probs=116.0

Q ss_pred             ceeeeeCceEEEEEEEC-CCcEEEEEEeccc---ChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEecCCCC
Q 047066          110 RMIGRGGYGTVFLGSLS-DNKAIAIKKSRIV---YQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEFVKLP  185 (256)
Q Consensus       110 ~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~~~  185 (256)
                      +.||+|+||.||++..+ ++..||+|.+...   .......+.+|+.+++.++||||+++++.+...+..++||||++++
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~i~~~~~~~~~~~~~~lv~E~~~~~   80 (323)
T cd05595           1 KLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLCFVMEYANGG   80 (323)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCcceeeEEecCCEEEEEEeCCCCC
Confidence            46999999999999965 6889999988643   2344567788999999999999999999999999999999999987


Q ss_pred             CC----------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceeeeeeeecc
Q 047066          186 TI----------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTL  242 (256)
Q Consensus       186 ~l----------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~~~~Gt~  242 (256)
                      +|          ++.....++.|++             |||||+|||++.++.+||+|||+++....+... .....||+
T Consensus        81 ~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~kL~Dfg~~~~~~~~~~~-~~~~~gt~  159 (323)
T cd05595          81 ELFFHLSRERVFTEERARFYGAEIVSALEYLHSRDVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGAT-MKTFCGTP  159 (323)
T ss_pred             cHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeEecCCCHHHEEEcCCCCEEecccHHhccccCCCCc-cccccCCc
Confidence            65          4444455555544             699999999999999999999998864322221 23356999


Q ss_pred             cc----cccccCCCCCCC
Q 047066          243 GY----YLHTSQGTLNKE  256 (256)
Q Consensus       243 ~y----~~~~~~~t~ksD  256 (256)
                      .|    .+.++.++.++|
T Consensus       160 ~y~aPE~~~~~~~~~~~D  177 (323)
T cd05595         160 EYLAPEVLEDNDYGRAVD  177 (323)
T ss_pred             CcCCcccccCCCCCchhc
Confidence            99    556677888887

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in

>cd05593 STKc_PKB_gamma Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B gamma

Probab=99.87  E-value=1.6e-21  Score=166.75  Aligned_cols=146  Identities=23%  Similarity=0.263  Sum_probs=116.1

Q ss_pred             ceeeeeCceEEEEEEEC-CCcEEEEEEeccc---ChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEecCCCC
Q 047066          110 RMIGRGGYGTVFLGSLS-DNKAIAIKKSRIV---YQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEFVKLP  185 (256)
Q Consensus       110 ~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~~~  185 (256)
                      +.||+|+||.||++..+ ++..+|+|.+...   .......+.+|+.+++.++||||+++.+.+...+..++||||++++
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~Ey~~~g   80 (328)
T cd05593           1 KLLGKGTFGKVILVREKASGKYYAMKILKKEVIIAKDEVAHTLTESRVLKNTRHPFLTSLKYSFQTKDRLCFVMEYVNGG   80 (328)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCcceEEEEEcCCEEEEEEeCCCCC
Confidence            36899999999999965 6889999988643   2344567889999999999999999999999999999999999987


Q ss_pred             CC----------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceeeeeeeecc
Q 047066          186 TI----------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTL  242 (256)
Q Consensus       186 ~l----------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~~~~Gt~  242 (256)
                      +|          ++.....++.|++             |||||+|||++.++.+||+|||+++....... .....+||+
T Consensus        81 ~L~~~l~~~~~l~~~~~~~~~~qi~~aL~~LH~~~ivHrDikp~NIll~~~~~~kL~DfG~~~~~~~~~~-~~~~~~gt~  159 (328)
T cd05593          81 ELFFHLSRERVFSEDRTRFYGAEIVSALDYLHSGKIVYRDLKLENLMLDKDGHIKITDFGLCKEGITDAA-TMKTFCGTP  159 (328)
T ss_pred             CHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeEecccCHHHeEECCCCcEEEecCcCCccCCCccc-ccccccCCc
Confidence            65          3444445555544             69999999999999999999999986432222 223456999


Q ss_pred             cc----cccccCCCCCCC
Q 047066          243 GY----YLHTSQGTLNKE  256 (256)
Q Consensus       243 ~y----~~~~~~~t~ksD  256 (256)
                      .|    .+.+..++.++|
T Consensus       160 ~y~aPE~~~~~~~~~~~D  177 (328)
T cd05593         160 EYLAPEVLEDNDYGRAVD  177 (328)
T ss_pred             CccChhhhcCCCCCccCC
Confidence            99    555677888887

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, gamma (or Akt3) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-gamma is predominantly expressed in neuronal tissues. Mice deficient in PKB-gamma show a reduction in brain weight due to the decreases in cell size and cell number. PKB-gamma has also been shown to be upregulate

>KOG0594 consensus Protein kinase PCTAIRE and related kinases [General function prediction only]

Probab=99.87  E-value=4.9e-22  Score=163.96  Aligned_cols=152  Identities=24%  Similarity=0.349  Sum_probs=117.2

Q ss_pred             CCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccCh--hHHHHHHHHHHHHHhCCCCc-ccceeeEEEECC------
Q 047066          104 NNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVYQ--SQIEQCINKVVVLSQINHRN-VVGLLGCCLETE------  173 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~h~n-iv~l~~~~~~~~------  173 (256)
                      ..|...+.||+|+||+||+|+.+ +|+.||+|+++....  ..-....+|+.+|++++|+| |+.+++++.+.+      
T Consensus        11 ~~~~~~eklGeGtyg~Vykar~~~~g~~VALKkirl~~~~EG~P~taiREisllk~L~~~~~iv~L~dv~~~~~~~~~~~   90 (323)
T KOG0594|consen   11 FDYEKVEKLGEGTYGVVYKARSKRTGKFVALKKIRLEFEEEGVPSTAIREISLLKRLSHANHIVRLHDVIHTSNNHRGIG   90 (323)
T ss_pred             HHHHHHHHhCCCCceEEEEEEEecCCCEEEEEEEeccccccCCCchhhHHHHHHHHhCCCcceEEEEeeeeecccccccc
Confidence            45777788999999999999965 789999999876543  22345789999999999999 999999999877      


Q ss_pred             EEEEEEecCCC---------C----CCCHHHHHHHHHHH-------------HhccCCCcEEEcCCCcEEEEecCCceec
Q 047066          174 VPLLVNEFVKL---------P----TISWEVRIRIAAET-------------AEDIKSINILLDDNYTTKVCDFGASKLV  227 (256)
Q Consensus       174 ~~~lv~e~~~~---------~----~l~~~~~~~~~~~i-------------~rdlk~~NiLi~~~~~~ki~DFGla~~~  227 (256)
                      .+++|+||++.         +    .++......+..|+             ||||||.|+|++++|.+||+|||+|+..
T Consensus        91 ~l~lvfe~~d~DL~~ymd~~~~~~~g~~~~~ik~~m~Qll~gl~~~H~~~IlHRDLKPQNlLi~~~G~lKlaDFGlAra~  170 (323)
T KOG0594|consen   91 KLYLVFEFLDRDLKKYMDSLPKKPQGLPPRLIKSFMRQLLRGLAFLHSHGILHRDLKPQNLLISSSGVLKLADFGLARAF  170 (323)
T ss_pred             eEEEEEEeecccHHHHHHhccccccCCCHHHHHHHHHHHHHHHHHHHhCCeecccCCcceEEECCCCcEeeeccchHHHh
Confidence            89999999854         1    24444444444443             3799999999999999999999999987


Q ss_pred             CCCCceeeeeeeecccc-----cccccCCCCCCC
Q 047066          228 PIDETQLSTMVQGTLGY-----YLHTSQGTLNKE  256 (256)
Q Consensus       228 ~~~~~~~~~~~~Gt~~y-----~~~~~~~t~ksD  256 (256)
                      ..+... .+...+|.+|     .+....|++..|
T Consensus       171 ~ip~~~-yt~evvTlWYRaPEvLlGs~~Ys~~vD  203 (323)
T KOG0594|consen  171 SIPMRT-YTPEVVTLWYRAPEVLLGSTSYSTSVD  203 (323)
T ss_pred             cCCccc-ccccEEEeeccCHHHhcCCCcCCCCcc
Confidence            655443 3445699999     333445666554

>cd05596 STKc_ROCK Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase

Probab=99.87  E-value=7.9e-22  Score=171.39  Aligned_cols=156  Identities=20%  Similarity=0.219  Sum_probs=120.1

Q ss_pred             hhcCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEeccc---ChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEE
Q 047066          101 IATNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIV---YQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPL  176 (256)
Q Consensus       101 ~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~  176 (256)
                      ...++|++.+.||+|+||.||++..+ ++..+|+|.+...   .......+.+|+.+++.++||||+++++++.+.+..+
T Consensus        40 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~h~~iv~~~~~~~~~~~~~  119 (370)
T cd05596          40 MKAEDFDVIKVIGRGAFGEVQLVRHKSSKQVYAMKLLSKFEMIKRSDSAFFWEERDIMAHANSEWIVQLHYAFQDDKYLY  119 (370)
T ss_pred             CCHHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCcceEEEEEecCCEEE
Confidence            34568999999999999999999975 6889999988542   2233355788999999999999999999999999999


Q ss_pred             EEEecCCCCCCC---------HHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCcee
Q 047066          177 LVNEFVKLPTIS---------WEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQL  234 (256)
Q Consensus       177 lv~e~~~~~~l~---------~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~  234 (256)
                      +||||+++|+|.         ......++.+++             |||||+|||+++++.+||+|||++..+.......
T Consensus       120 lv~Ey~~gg~L~~~l~~~~l~~~~~~~~~~qi~~aL~~LH~~~ivHrDLkp~NILl~~~~~~kL~DfG~~~~~~~~~~~~  199 (370)
T cd05596         120 MVMEYMPGGDLVNLMSNYDIPEKWARFYTAEVVLALDAIHSMGFIHRDVKPDNMLLDKSGHLKLADFGTCMKMDANGMVR  199 (370)
T ss_pred             EEEcCCCCCcHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHEEEcCCCCEEEEeccceeeccCCCccc
Confidence            999999998763         233333333433             7999999999999999999999998765433322


Q ss_pred             eeeeeecccc---c-cc----ccCCCCCCC
Q 047066          235 STMVQGTLGY---Y-LH----TSQGTLNKE  256 (256)
Q Consensus       235 ~~~~~Gt~~y---~-~~----~~~~t~ksD  256 (256)
                      ....+||+.|   + +.    .+.++.++|
T Consensus       200 ~~~~~gt~~y~aPE~~~~~~~~~~~~~~~D  229 (370)
T cd05596         200 CDTAVGTPDYISPEVLKSQGGDGYYGRECD  229 (370)
T ss_pred             CCCCCCCcCeECHHHhccCCCCCCCCCcee
Confidence            3345699999   2 22    234677776

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via in

>cd05598 STKc_LATS Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor

Probab=99.87  E-value=1.1e-21  Score=170.87  Aligned_cols=123  Identities=24%  Similarity=0.263  Sum_probs=101.4

Q ss_pred             CCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC---hhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEE
Q 047066          104 NNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY---QSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVN  179 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~  179 (256)
                      ++|++.+.||+|+||.||++... +++.+|+|.+....   ......+.+|+.+++.++||||+++++.+.+.+..+++|
T Consensus         1 ~~y~~~~~lG~G~~g~V~~a~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~h~~iv~~~~~~~~~~~~~lv~   80 (376)
T cd05598           1 SMFVKIKTIGIGAFGEVCLVRKVDTNALYAMKTLRKADVLMRNQAAHVKAERDILAEADNEWVVKLYYSFQDKDNLYFVM   80 (376)
T ss_pred             CCceEEEEEEeCCCeEEEEEEECCCCCEEEEEEEcHHHHHhhhhHHHHHHHHHHHHhCCCCCcceEEEEEEcCCEEEEEE
Confidence            36889999999999999999965 68899999875422   233466889999999999999999999999999999999


Q ss_pred             ecCCCCCCC----------HHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCcee
Q 047066          180 EFVKLPTIS----------WEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKL  226 (256)
Q Consensus       180 e~~~~~~l~----------~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~  226 (256)
                      ||+++++|.          ......++.|++             |||||+|||++.++.+||+|||+|..
T Consensus        81 E~~~~g~L~~~i~~~~~~~~~~~~~~~~qi~~al~~lH~~~ivHrDlkp~Nill~~~~~ikL~DFG~a~~  150 (376)
T cd05598          81 DYIPGGDMMSLLIRLGIFEEDLARFYIAELTCAIESVHKMGFIHRDIKPDNILIDRDGHIKLTDFGLCTG  150 (376)
T ss_pred             eCCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeEeCCCCHHHEEECCCCCEEEEeCCCCcc
Confidence            999987763          233333344433             79999999999999999999999853

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS was originally identified in Drosophila using a screen for genes whose inactivation led to overproliferation of cells. In tetrapods, there are two LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. LATS functions as a tumor suppressor and is implicated in cell cycle regulation.

>cd05612 STKc_PRKX_like Catalytic domain of PRKX-like Protein Serine/Threonine Kinases

Probab=99.87  E-value=7.1e-22  Score=166.16  Aligned_cols=149  Identities=23%  Similarity=0.266  Sum_probs=119.2

Q ss_pred             CCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC---hhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEE
Q 047066          104 NNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY---QSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVN  179 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~  179 (256)
                      ++|++.+.||+|+||.||+|..+ +++.+|+|.+....   ....+.+.+|+.+++.++||||+++++++.+.+..+++|
T Consensus         1 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~   80 (291)
T cd05612           1 DDLERIKTVGTGTFGRVHLVRDRISEHYYALKVMAIPEVIRLKQEQHVHNEKRVLKEVSHPFIIRLFWTEHDQRFLYMLM   80 (291)
T ss_pred             CCceeeeeeecCCCeEEEEEEEcCCCCEEEEEEEEHHHHhhhHHHHHHHHHHHHHHhCCCCcHhhhHhhhccCCeEEEEE
Confidence            36888899999999999999975 68899999875432   233466889999999999999999999999999999999


Q ss_pred             ecCCCCCC----------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceeee
Q 047066          180 EFVKLPTI----------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLST  236 (256)
Q Consensus       180 e~~~~~~l----------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~  236 (256)
                      ||+++++|          ++.....++.|++             +||||+|||++.++.+||+|||+++......    .
T Consensus        81 e~~~~~~L~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~NIli~~~~~~kl~Dfg~~~~~~~~~----~  156 (291)
T cd05612          81 EYVPGGELFSYLRNSGRFSNSTGLFYASEIVCALEYLHSKEIVYRDLKPENILLDKEGHIKLTDFGFAKKLRDRT----W  156 (291)
T ss_pred             eCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeeecCCCHHHeEECCCCCEEEEecCcchhccCCc----c
Confidence            99998765          3334444454444             6999999999999999999999998764321    2


Q ss_pred             eeeecccc----cccccCCCCCCC
Q 047066          237 MVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       237 ~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      ..+||+.|    .+.+..++.++|
T Consensus       157 ~~~gt~~y~aPE~~~~~~~~~~~D  180 (291)
T cd05612         157 TLCGTPEYLAPEVIQSKGHNKAVD  180 (291)
T ss_pred             cccCChhhcCHHHHcCCCCCchhh
Confidence            34689999    555666777777

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyt

>cd05601 STKc_CRIK Catalytic domain of the Protein Serine/Threonine Kinase, Citron Rho-interacting kinase

Probab=99.87  E-value=1.8e-21  Score=166.42  Aligned_cols=153  Identities=21%  Similarity=0.236  Sum_probs=119.9

Q ss_pred             CCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC---hhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEE
Q 047066          104 NNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY---QSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVN  179 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~  179 (256)
                      ++|++.+.||+|+||.||++..+ +++.+|+|.++...   ......+.+|+.+++.++||||+++++++...+..++||
T Consensus         1 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~i~~~~~~~~i~~~~~~~~~~~~~~lv~   80 (330)
T cd05601           1 KDFDVKSLVGRGHFGEVQVVREKATGDIYAMKVMKKSVLLAQETVSFFEEERDILSISNSPWIPQLQYAFQDKDNLYLVM   80 (330)
T ss_pred             CCceEEEEEEeccCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCcceeeEEecCCeEEEEE
Confidence            36888999999999999999965 68899999886432   234456888999999999999999999999999999999


Q ss_pred             ecCCCCCCC-----------HHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceee
Q 047066          180 EFVKLPTIS-----------WEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLS  235 (256)
Q Consensus       180 e~~~~~~l~-----------~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~  235 (256)
                      ||+++++|.           +.....++.|++             +||||+|||++.++.+||+|||++..+..+.....
T Consensus        81 e~~~~~~L~~~l~~~~~~l~~~~~~~~~~qi~~aL~~lH~~~i~H~Dlkp~NIll~~~~~~kL~Dfg~a~~~~~~~~~~~  160 (330)
T cd05601          81 EYQPGGDLLSLLNRYEDQFDEDMAQFYLAELVLAIHSVHQMGYVHRDIKPENVLIDRTGHIKLADFGSAARLTANKMVNS  160 (330)
T ss_pred             CCCCCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeEcccCchHheEECCCCCEEeccCCCCeECCCCCceee
Confidence            999887653           333333444433             69999999999999999999999988765444333


Q ss_pred             eeeeecccc----ccc------ccCCCCCCC
Q 047066          236 TMVQGTLGY----YLH------TSQGTLNKE  256 (256)
Q Consensus       236 ~~~~Gt~~y----~~~------~~~~t~ksD  256 (256)
                      ....||+.|    .+.      ...++.++|
T Consensus       161 ~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~D  191 (330)
T cd05601         161 KLPVGTPDYIAPEVLTTMNGDGKGTYGVECD  191 (330)
T ss_pred             ecccCCccccCHHHhccccccccCCCCCcce
Confidence            445689998    222      455677776

Serine/Threonine Kinases (STKs), Citron Rho-interacting kinase (CRIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CRIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CRIK is also called citron kinase. It contains a catalytic domain, a central coiled-coil domain, and a C-terminal region containing a Rho-binding domain (RBD), a zinc finger, and a pleckstrin homology (PH) domain, in addition to other motifs. CRIK, an effector of the small GTPase Rho, plays an important function during cytokinesis and affects its contractile process. CRIK-deficient mice show severe ataxia and epilepsy as a result of abnor

>PHA03212 serine/threonine kinase US3; Provisional

Probab=99.87  E-value=1.3e-21  Score=171.18  Aligned_cols=150  Identities=19%  Similarity=0.161  Sum_probs=118.3

Q ss_pred             hhcCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEE
Q 047066          101 IATNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVN  179 (256)
Q Consensus       101 ~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~  179 (256)
                      +...+|++.+.||+|+||.||++... +++.||+|...      ...+.+|+.+++.++||||+++++++......++++
T Consensus        89 ~~~~~y~~~~~lg~G~~g~V~~~~d~~~~~~vaiK~~~------~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~lv~  162 (391)
T PHA03212         89 IEKAGFSILETFTPGAEGFAFACIDNKTCEHVVIKAGQ------RGGTATEAHILRAINHPSIIQLKGTFTYNKFTCLIL  162 (391)
T ss_pred             cccCCcEEEEEEcCCCCeEEEEEEECCCCCEEEEechh------hhhhHHHHHHHHhCCCCCCCCEeEEEEECCeeEEEE
Confidence            34468999999999999999999964 68899999643      245678999999999999999999999999999999


Q ss_pred             ecCCC---------CCCCHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceeeee
Q 047066          180 EFVKL---------PTISWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTM  237 (256)
Q Consensus       180 e~~~~---------~~l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~~  237 (256)
                      |++.+         +.+++...+.++.|++             |||||+|||++.++.+||+|||+|+............
T Consensus       163 e~~~~~L~~~l~~~~~l~~~~~~~i~~qi~~aL~ylH~~~IvHrDiKP~NIll~~~~~vkL~DFG~a~~~~~~~~~~~~~  242 (391)
T PHA03212        163 PRYKTDLYCYLAAKRNIAICDILAIERSVLRAIQYLHENRIIHRDIKAENIFINHPGDVCLGDFGAACFPVDINANKYYG  242 (391)
T ss_pred             ecCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCChHhEEEcCCCCEEEEeCCccccccccccccccc
Confidence            99864         2345555555555544             7999999999999999999999997643322222334


Q ss_pred             eeecccc----cccccCCCCCCC
Q 047066          238 VQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       238 ~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      ..||+.|    .+.+..++.++|
T Consensus       243 ~~gt~~y~aPE~~~~~~~~~~~D  265 (391)
T PHA03212        243 WAGTIATNAPELLARDPYGPAVD  265 (391)
T ss_pred             ccCccCCCChhhhcCCCCCcHHH
Confidence            5699999    555667787776

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=99.87  E-value=2.4e-23  Score=191.91  Aligned_cols=161  Identities=21%  Similarity=0.218  Sum_probs=132.1

Q ss_pred             hHHHHhhcCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEeccc---ChhHHHHHHHHHHHHHhCCCCcccceeeEEEE
Q 047066           96 AGELKIATNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIV---YQSQIEQCINKVVVLSQINHRNVVGLLGCCLE  171 (256)
Q Consensus        96 ~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~  171 (256)
                      ..+....+++|.+.++||.|+||.|..++.+ +++.+|+|++...   ...+...|..|-++|..-+.+-|++++-.|.+
T Consensus        67 v~~lrl~~~DfeilKvIGrGaFGEV~lVr~k~t~~VYAMK~lnK~eMlKr~~tA~F~EERDimv~~ns~Wiv~LhyAFQD  146 (1317)
T KOG0612|consen   67 VKELRLKAEDFEILKVIGRGAFGEVALVRHKSTEKVYAMKILNKWEMLKRAETACFREERDIMVFGNSEWIVQLHYAFQD  146 (1317)
T ss_pred             HHHHhCCHHhhHHHHHhcccccceeEEEEeeccccchhHHHhhHHHHhhchhHHHHHHHhHHHHcCCcHHHHHHHHHhcC
Confidence            3456677889999999999999999999976 5788999988763   34455678999999999999999999999999


Q ss_pred             CCEEEEEEecCCCCCCC----------H-------------HHHHHHHHHHHhccCCCcEEEcCCCcEEEEecCCceecC
Q 047066          172 TEVPLLVNEFVKLPTIS----------W-------------EVRIRIAAETAEDIKSINILLDDNYTTKVCDFGASKLVP  228 (256)
Q Consensus       172 ~~~~~lv~e~~~~~~l~----------~-------------~~~~~~~~~i~rdlk~~NiLi~~~~~~ki~DFGla~~~~  228 (256)
                      .+++|+||||++||.|-          .             ...+|-..-||||+||.|||+|.+|++||+|||.|..+.
T Consensus       147 ~~~LYlVMdY~pGGDlltLlSk~~~~pE~~ArFY~aEiVlAldslH~mgyVHRDiKPDNvLld~~GHikLADFGsClkm~  226 (1317)
T KOG0612|consen  147 ERYLYLVMDYMPGGDLLTLLSKFDRLPEDWARFYTAEIVLALDSLHSMGYVHRDIKPDNVLLDKSGHIKLADFGSCLKMD  226 (1317)
T ss_pred             ccceEEEEecccCchHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHhccceeccCCcceeEecccCcEeeccchhHHhcC
Confidence            99999999999998851          1             112444555779999999999999999999999999888


Q ss_pred             CCCceeeeeeeecccc-------cc-cc-cCCCCCCC
Q 047066          229 IDETQLSTMVQGTLGY-------YL-HT-SQGTLNKE  256 (256)
Q Consensus       229 ~~~~~~~~~~~Gt~~y-------~~-~~-~~~t~ksD  256 (256)
                      .+..-.+...+|||.|       .. .+ |.|.+.+|
T Consensus       227 ~dG~V~s~~aVGTPDYISPEvLqs~~~~~g~yG~ecD  263 (1317)
T KOG0612|consen  227 ADGTVRSSVAVGTPDYISPEVLQSQGDGKGEYGRECD  263 (1317)
T ss_pred             CCCcEEeccccCCCCccCHHHHHhhcCCccccCCccc
Confidence            7777777777899999       11 12 56666665

>cd05594 STKc_PKB_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B alpha

Probab=99.87  E-value=4e-21  Score=164.07  Aligned_cols=146  Identities=21%  Similarity=0.245  Sum_probs=114.4

Q ss_pred             ceeeeeCceEEEEEEEC-CCcEEEEEEeccc---ChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEecCCCC
Q 047066          110 RMIGRGGYGTVFLGSLS-DNKAIAIKKSRIV---YQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEFVKLP  185 (256)
Q Consensus       110 ~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~~~  185 (256)
                      +.||+|+||.||++... ++..+|+|.+...   .......+..|+.++..++||||+++.+++...+..++||||++++
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~~~hp~i~~~~~~~~~~~~~~lv~E~~~~~   80 (325)
T cd05594           1 KLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLTALKYSFQTHDRLCFVMEYANGG   80 (325)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCCceEEEEEcCCEEEEEEeCCCCC
Confidence            46999999999999864 6889999988643   2334467788999999999999999999999999999999999987


Q ss_pred             CC----------CHHHHHHHHHHHH--------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceeeeeeeec
Q 047066          186 TI----------SWEVRIRIAAETA--------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGT  241 (256)
Q Consensus       186 ~l----------~~~~~~~~~~~i~--------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~~~~Gt  241 (256)
                      +|          ++.....++.|++              |||||+|||++.++.+||+|||+++........ .....||
T Consensus        81 ~L~~~l~~~~~l~~~~~~~~~~qi~~aL~~lH~~~~ivHrDikp~NIll~~~~~~kL~Dfg~~~~~~~~~~~-~~~~~gt  159 (325)
T cd05594          81 ELFFHLSRERVFSEDRARFYGAEIVSALDYLHSEKNVVYRDLKLENLMLDKDGHIKITDFGLCKEGIKDGAT-MKTFCGT  159 (325)
T ss_pred             cHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhcCCEEecCCCCCeEEECCCCCEEEecCCCCeecCCCCcc-cccccCC
Confidence            65          3333344444433              699999999999999999999999864322222 2334699


Q ss_pred             ccc----cccccCCCCCCC
Q 047066          242 LGY----YLHTSQGTLNKE  256 (256)
Q Consensus       242 ~~y----~~~~~~~t~ksD  256 (256)
                      +.|    .+.++.++.++|
T Consensus       160 ~~y~aPE~~~~~~~~~~~D  178 (325)
T cd05594         160 PEYLAPEVLEDNDYGRAVD  178 (325)
T ss_pred             cccCCHHHHccCCCCCccc
Confidence            999    555677888887

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficien

>cd05104 PTKc_Kit Catalytic domain of the Protein Tyrosine Kinase, Kit

Probab=99.87  E-value=9.9e-22  Score=171.08  Aligned_cols=161  Identities=22%  Similarity=0.380  Sum_probs=122.3

Q ss_pred             hHHHHhhcCCCcccceeeeeCceEEEEEEE------CCCcEEEEEEecccC-hhHHHHHHHHHHHHHhC-CCCcccceee
Q 047066           96 AGELKIATNNYAYDRMIGRGGYGTVFLGSL------SDNKAIAIKKSRIVY-QSQIEQCINKVVVLSQI-NHRNVVGLLG  167 (256)
Q Consensus        96 ~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~------~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l-~h~niv~l~~  167 (256)
                      ..++.++.++|++.+.||+|+||.||+|..      .++..||+|.++... ....+.+.+|+.++..+ +||||+++++
T Consensus        27 ~~~~~~~~~~~~~~~~LG~G~fG~V~~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~Ei~il~~l~~HpnIv~l~~  106 (375)
T cd05104          27 DHKWEFPRNRLSFGKTLGAGAFGKVVEATAYGLFKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHINIVNLLG  106 (375)
T ss_pred             ccccccchHHeehhheecCCccceEEEEEEeccccCccceeEEEEeccCCcCcHHHHHHHHHHHHHHHhcCCcceeeeee
Confidence            345667778899999999999999999963      235689999886433 34456789999999999 8999999999


Q ss_pred             EEEECCEEEEEEecCCCCCCCH----------------------------------------------------------
Q 047066          168 CCLETEVPLLVNEFVKLPTISW----------------------------------------------------------  189 (256)
Q Consensus       168 ~~~~~~~~~lv~e~~~~~~l~~----------------------------------------------------------  189 (256)
                      +|...+..+++|||+++|+|..                                                          
T Consensus       107 ~~~~~~~~~lv~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  186 (375)
T cd05104         107 ACTVGGPTLVITEYCCYGDLLNFLRRKRDSFICPKHEDHAEAALYKNLLHQREMSCDSLNEYMDMKPGVSYVVPTKADKR  186 (375)
T ss_pred             eeccCCcceeeehhccCCcHHHHHHhcccccccccccchhhhHHHHhhhhhhcccchhhhhhhhcCCCcccccccccccc
Confidence            9999999999999998876532                                                          


Q ss_pred             ---------------------------HHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCC
Q 047066          190 ---------------------------EVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPI  229 (256)
Q Consensus       190 ---------------------------~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~  229 (256)
                                                 .....++.+++             +||||+|||+++++.+||+|||+++....
T Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~~ivH~Dlkp~Nill~~~~~~kl~DfG~a~~~~~  266 (375)
T cd05104         187 RSVRSGSYIDQDVTSEILEEDELALDTEDLLSFSYQVAKGMSFLASKNCIHRDLAARNILLTHGRITKICDFGLARDIRN  266 (375)
T ss_pred             cccccceecccccHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCchhhEEEECCCcEEEecCccceeccC
Confidence                                       22233444444             69999999999999999999999987654


Q ss_pred             CCcee-eeeeeecccc----cccccCCCCCCC
Q 047066          230 DETQL-STMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       230 ~~~~~-~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      ..... .....+++.|    .+.+..++.++|
T Consensus       267 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sD  298 (375)
T cd05104         267 DSNYVVKGNARLPVKWMAPESIFNCVYTFESD  298 (375)
T ss_pred             cccccccCCCCCCcceeChhHhcCCCCCCCCC
Confidence            33221 1112245567    555667888887

Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem ce

>KOG0580 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.87  E-value=7.5e-23  Score=160.25  Aligned_cols=151  Identities=21%  Similarity=0.294  Sum_probs=116.5

Q ss_pred             cCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC---hhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEE
Q 047066          103 TNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY---QSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLV  178 (256)
Q Consensus       103 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv  178 (256)
                      -++|++.+.||+|.||.||.|+.+ ++..||+|.+....   .....++.+|+++-..|+||||++++++|.+....|++
T Consensus        21 l~dfeigr~LgkgkFG~vYlarekks~~IvalKVlfKsqi~~~~v~~qlrREiEIqs~L~hpnilrlY~~fhd~~riyLi  100 (281)
T KOG0580|consen   21 LDDFEIGRPLGKGKFGNVYLAREKKSLFIVALKVLFKSQILKTQVEHQLRREIEIQSHLRHPNILRLYGYFHDSKRIYLI  100 (281)
T ss_pred             hhhccccccccCCccccEeEeeeccCCcEEEEeeeeHHHHHHhcchhhhhheeEeecccCCccHHhhhhheeccceeEEE
Confidence            368899999999999999999965 67789999875432   22235788999999999999999999999999999999


Q ss_pred             EecCCCCCCC------------HHHHHHHHHH-------------HHhccCCCcEEEcCCCcEEEEecCCceecCCCCce
Q 047066          179 NEFVKLPTIS------------WEVRIRIAAE-------------TAEDIKSINILLDDNYTTKVCDFGASKLVPIDETQ  233 (256)
Q Consensus       179 ~e~~~~~~l~------------~~~~~~~~~~-------------i~rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~  233 (256)
                      +||...|++-            ......+..|             |+||+||+|+|++.++..||+|||-+..-+   ..
T Consensus       101 lEya~~gel~k~L~~~~~~~f~e~~~a~Yi~q~A~Al~y~h~k~VIhRdiKpenlLlg~~~~lkiAdfGwsV~~p---~~  177 (281)
T KOG0580|consen  101 LEYAPRGELYKDLQEGRMKRFDEQRAATYIKQLANALLYCHLKRVIHRDIKPENLLLGSAGELKIADFGWSVHAP---SN  177 (281)
T ss_pred             EEecCCchHHHHHHhcccccccccchhHHHHHHHHHHHHhccCCcccCCCCHHHhccCCCCCeeccCCCceeecC---CC
Confidence            9999887651            1222223333             448999999999999999999999887643   22


Q ss_pred             eeeeeeecccc----cccccCCCCCCC
Q 047066          234 LSTMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       234 ~~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      ...+.|||..|    ...+...+.+.|
T Consensus       178 kR~tlcgt~dyl~pEmv~~~~hd~~Vd  204 (281)
T KOG0580|consen  178 KRKTLCGTLDYLPPEMVEGRGHDKFVD  204 (281)
T ss_pred             CceeeecccccCCHhhcCCCCccchhh
Confidence            24567899999    444444444443

>PTZ00267 NIMA-related protein kinase; Provisional

Probab=99.87  E-value=2.1e-21  Score=174.04  Aligned_cols=153  Identities=18%  Similarity=0.188  Sum_probs=121.1

Q ss_pred             CCCcccceeeeeCceEEEEEEEC-C-CcEEEEEEecccChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEec
Q 047066          104 NNYAYDRMIGRGGYGTVFLGSLS-D-NKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEF  181 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~V~~~~~~-~-~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~  181 (256)
                      ..|.+.+.||+|++|.||++... + +..|++|.+..........+.+|+.+++.++||||+++++++...+..++||||
T Consensus        67 ~~y~~~~~lg~G~~g~vy~a~~~~~~~~~vv~K~~~~~~~~~~~~~~~E~~~l~~l~Hpniv~~~~~~~~~~~~~lv~E~  146 (478)
T PTZ00267         67 HMYVLTTLVGRNPTTAAFVATRGSDPKEKVVAKFVMLNDERQAAYARSELHCLAACDHFGIVKHFDDFKSDDKLLLIMEY  146 (478)
T ss_pred             eeEEEEEEEEeCCCcEEEEEEEcCCCCeEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCEeEEEEEEEECCEEEEEEEC
Confidence            34889999999999999999854 3 678888877655555556788899999999999999999999999999999999


Q ss_pred             CCCCCCCH--------------HHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCc-e
Q 047066          182 VKLPTISW--------------EVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDET-Q  233 (256)
Q Consensus       182 ~~~~~l~~--------------~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~-~  233 (256)
                      +++++|..              .....++.|++             |||||+|||++.++.+||+|||+++.+..... .
T Consensus       147 ~~gg~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~lH~~~ivHrDlkp~NIll~~~~~~kL~DFgla~~~~~~~~~~  226 (478)
T PTZ00267        147 GSGGDLNKQIKQRLKEHLPFQEYEVGLLFYQIVLALDEVHSRKMMHRDLKSANIFLMPTGIIKLGDFGFSKQYSDSVSLD  226 (478)
T ss_pred             CCCCCHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhCCEEECCcCHHhEEECCCCcEEEEeCcCceecCCccccc
Confidence            99988732              22233444443             69999999999999999999999997654322 1


Q ss_pred             eeeeeeecccc----cccccCCCCCCC
Q 047066          234 LSTMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       234 ~~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      .....+||+.|    .+.+..++.++|
T Consensus       227 ~~~~~~gt~~y~aPE~~~~~~~~~~~D  253 (478)
T PTZ00267        227 VASSFCGTPYYLAPELWERKRYSKKAD  253 (478)
T ss_pred             cccccCCCccccCHhHhCCCCCCcHHh
Confidence            23345699999    555677888877

>cd05585 STKc_YPK1_like Catalytic domain of Yeast Protein Kinase 1-like Protein Serine/Threonine Kinases

Probab=99.87  E-value=2.4e-21  Score=164.56  Aligned_cols=144  Identities=28%  Similarity=0.319  Sum_probs=114.2

Q ss_pred             eeeeCceEEEEEEEC-CCcEEEEEEeccc---ChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEecCCCCCC
Q 047066          112 IGRGGYGTVFLGSLS-DNKAIAIKKSRIV---YQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEFVKLPTI  187 (256)
Q Consensus       112 lg~G~~g~V~~~~~~-~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~~~~l  187 (256)
                      ||+|+||.||++... ++..+|+|.+...   .......+.+|+.++..++||||+++++++...+..+++|||+++++|
T Consensus         1 lg~G~~g~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~g~L   80 (312)
T cd05585           1 IGKGSFGKVMQVRKRDTQRIYALKTIRKAHIVSRSEVTHTLAERTVLAQVNCPFIVPLKFSFQSPEKLYLVLAFINGGEL   80 (312)
T ss_pred             CCcCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCcEeceeeEEecCCeEEEEEcCCCCCcH
Confidence            689999999999975 5789999988642   234456788999999999999999999999999999999999998775


Q ss_pred             ----------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceeeeeeeecccc
Q 047066          188 ----------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTLGY  244 (256)
Q Consensus       188 ----------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~~~~Gt~~y  244 (256)
                                ++.....++.|++             |||||+|||++.++.+||+|||+++....... .....+||+.|
T Consensus        81 ~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~HrDlkp~Nili~~~~~~kl~Dfg~~~~~~~~~~-~~~~~~gt~~y  159 (312)
T cd05585          81 FHHLQREGRFDLSRARFYTAELLCALENLHKFNVIYRDLKPENILLDYQGHIALCDFGLCKLNMKDDD-KTNTFCGTPEY  159 (312)
T ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeEeCCCCHHHeEECCCCcEEEEECcccccCccCCC-ccccccCCccc
Confidence                      3333444444443             79999999999999999999999986433222 23345699999


Q ss_pred             ----cccccCCCCCCC
Q 047066          245 ----YLHTSQGTLNKE  256 (256)
Q Consensus       245 ----~~~~~~~t~ksD  256 (256)
                          .+.+..++.++|
T Consensus       160 ~aPE~~~~~~~~~~~D  175 (312)
T cd05585         160 LAPELLLGHGYTKAVD  175 (312)
T ss_pred             CCHHHHcCCCCCCccc
Confidence                556677888887

Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It pl

>KOG0032 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=99.87  E-value=2.1e-21  Score=167.71  Aligned_cols=153  Identities=25%  Similarity=0.306  Sum_probs=123.6

Q ss_pred             hcCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccCh---hHHHHHHHHHHHHHhCC-CCcccceeeEEEECCEEE
Q 047066          102 ATNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVYQ---SQIEQCINKVVVLSQIN-HRNVVGLLGCCLETEVPL  176 (256)
Q Consensus       102 ~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~---~~~~~~~~E~~~l~~l~-h~niv~l~~~~~~~~~~~  176 (256)
                      ....|++.+.||.|.||.||+|..+ +|+.+|+|.+.....   ...+.+.+|+.+|+++. ||||+.+.+.+.+....+
T Consensus        33 ~~~~Y~l~~~lG~G~Fg~v~~~~~~~tg~~~A~K~i~k~~~~~~~~~~~v~~Ev~il~~l~~hpniv~l~~~~e~~~~~~  112 (382)
T KOG0032|consen   33 IKEKYELGRELGRGQFGVVYLCREKSTGKEVACKVIPKRKLRGKEDREDVRREVAILQQLSGHPNIVQLKDAFEDPDSVY  112 (382)
T ss_pred             ccccEEehhhhCCCCceEEEEEEecCCCceeEEEEeehhhccccccHHHHHHHHHHHHhccCCCCEEEEEEEEEcCCeEE
Confidence            3467899999999999999999976 599999998865432   24468899999999997 999999999999999999


Q ss_pred             EEEecCCCCCC---------CHHHHHHHHHHHH-------------hccCCCcEEEcCC----CcEEEEecCCceecCCC
Q 047066          177 LVNEFVKLPTI---------SWEVRIRIAAETA-------------EDIKSINILLDDN----YTTKVCDFGASKLVPID  230 (256)
Q Consensus       177 lv~e~~~~~~l---------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~----~~~ki~DFGla~~~~~~  230 (256)
                      +|||++.+|.|         ++.....++.+++             |||||+|+|+...    +.+|++|||+|..... 
T Consensus       113 lvmEL~~GGeLfd~i~~~~~sE~da~~~~~~il~av~~lH~~gvvHrDlKpEN~L~~~~~~~~~~ik~~DFGla~~~~~-  191 (382)
T KOG0032|consen  113 LVMELCEGGELFDRIVKKHYSERDAAGIIRQILEAVKYLHSLGVVHRDLKPENLLLASKDEGSGRIKLIDFGLAKFIKP-  191 (382)
T ss_pred             EEEEecCCchHHHHHHHccCCHHHHHHHHHHHHHHHHHHHhCCceeccCCHHHeeeccccCCCCcEEEeeCCCceEccC-
Confidence            99999998775         4444444555444             7999999999533    4799999999998765 


Q ss_pred             Cceeeeeeeecccc----cccccCCCCCCC
Q 047066          231 ETQLSTMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       231 ~~~~~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                       .......+|||.|    .+....|+..+|
T Consensus       192 -~~~~~~~~Gtp~y~APEvl~~~~y~~~~D  220 (382)
T KOG0032|consen  192 -GERLHTIVGTPEYVAPEVLGGRPYGDEVD  220 (382)
T ss_pred             -CceEeeecCCccccCchhhcCCCCCcccc
Confidence             3445667899999    444477777766

>KOG0201 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.87  E-value=8.4e-23  Score=172.07  Aligned_cols=152  Identities=23%  Similarity=0.302  Sum_probs=127.7

Q ss_pred             CCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC-hhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEec
Q 047066          104 NNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY-QSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEF  181 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~  181 (256)
                      ..|+..+.||.|+||.||+|... .++.||+|.+.... ....++..+|+.+|..++++||.++++.+..+..+|++|||
T Consensus        13 ~~~~~~~~IgrGsfG~Vyk~~d~~t~k~vAiKii~Le~~~deIediqqei~~Ls~~~~~~it~yygsyl~g~~LwiiMey   92 (467)
T KOG0201|consen   13 LLYTKLELIGRGSFGEVYKAIDNKTKKVVAIKIIDLEEAEDEIEDIQQEISVLSQCDSPNITEYYGSYLKGTKLWIIMEY   92 (467)
T ss_pred             cccccchhccccccceeeeeeeccccceEEEEEechhhcchhhHHHHHHHHHHHhcCcchHHhhhhheeecccHHHHHHH
Confidence            45777789999999999999964 68899999987654 56778999999999999999999999999999999999999


Q ss_pred             CCCCCCCHHH-----------------------HHHHHHHHHhccCCCcEEEcCCCcEEEEecCCceecCCCCceeeeee
Q 047066          182 VKLPTISWEV-----------------------RIRIAAETAEDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMV  238 (256)
Q Consensus       182 ~~~~~l~~~~-----------------------~~~~~~~i~rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~~~  238 (256)
                      |.+|++....                       .++--.-+|||||+.|||+..+|.+|++|||.+..+....... .+.
T Consensus        93 ~~gGsv~~lL~~~~~~~E~~i~~ilre~l~~l~ylH~~~kiHrDIKaanil~s~~g~vkl~DfgVa~ql~~~~~rr-~tf  171 (467)
T KOG0201|consen   93 CGGGSVLDLLKSGNILDEFEIAVILREVLKGLDYLHSEKKIHRDIKAANILLSESGDVKLADFGVAGQLTNTVKRR-KTF  171 (467)
T ss_pred             hcCcchhhhhccCCCCccceeeeehHHHHHHhhhhhhcceecccccccceeEeccCcEEEEecceeeeeechhhcc-ccc
Confidence            9998753221                       2333345779999999999999999999999999987665554 456


Q ss_pred             eecccc----cccccCCCCCCC
Q 047066          239 QGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       239 ~Gt~~y----~~~~~~~t~ksD  256 (256)
                      +|||.|    .+....|+.|+|
T Consensus       172 vGTPfwMAPEVI~~~~Y~~KAD  193 (467)
T KOG0201|consen  172 VGTPFWMAPEVIKQSGYDTKAD  193 (467)
T ss_pred             cccccccchhhhccccccchhh
Confidence            799999    677778888887

>cd05623 STKc_MRCK_alpha Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase alpha

Probab=99.87  E-value=3.9e-21  Score=164.66  Aligned_cols=153  Identities=23%  Similarity=0.243  Sum_probs=118.3

Q ss_pred             CCCcccceeeeeCceEEEEEEEC-CCcEEEEEEeccc---ChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEE
Q 047066          104 NNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIV---YQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVN  179 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~  179 (256)
                      ++|++.+.||+|+||.||++..+ +++.+|+|.+...   .......+.+|..++..++|+||+++++.+.+.+..++||
T Consensus         1 ~~y~~~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~   80 (332)
T cd05623           1 EDFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNGDNQWITTLHYAFQDENNLYLVM   80 (332)
T ss_pred             CCceEEEEEEeCCCeEEEEEEECCCCCEEEEEEEeHHHHHHhhHHHHHHHHHHHHhhCCCCCEeeEEEEEecCCEEEEEE
Confidence            36888999999999999999976 5778999987532   2233355788999999999999999999999999999999


Q ss_pred             ecCCCCCCC-----------HHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceee
Q 047066          180 EFVKLPTIS-----------WEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLS  235 (256)
Q Consensus       180 e~~~~~~l~-----------~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~  235 (256)
                      ||+.+|+|.           +.....++.|++             |||||+|||++.++.+||+|||++..+........
T Consensus        81 ey~~~g~L~~~l~~~~~~l~~~~~~~~~~qi~~al~~lH~~~iiHrDlkp~Nili~~~~~~kL~DfG~a~~~~~~~~~~~  160 (332)
T cd05623          81 DYYVGGDLLTLLSKFEDRLPEDMARFYLAEMVIAIDSVHQLHYVHRDIKPDNILMDMNGHIRLADFGSCLKLMEDGTVQS  160 (332)
T ss_pred             eccCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeEecCCCHHHEEECCCCCEEEeecchheecccCCccee
Confidence            999987763           222333333333             79999999999999999999999987644433333


Q ss_pred             eeeeecccc----ccc-----ccCCCCCCC
Q 047066          236 TMVQGTLGY----YLH-----TSQGTLNKE  256 (256)
Q Consensus       236 ~~~~Gt~~y----~~~-----~~~~t~ksD  256 (256)
                      ...+||+.|    .+.     .+.++.++|
T Consensus       161 ~~~~gt~~y~aPE~~~~~~~~~~~~~~~~D  190 (332)
T cd05623         161 SVAVGTPDYISPEILQAMEDGKGKYGPECD  190 (332)
T ss_pred             cccccCccccCHHHHhccccCCCCCCCcCC
Confidence            345699999    222     356788887

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKalpha is expressed ubiquitously in many tissues. It plays a role in the regulation of peripheral actin reorganization and neurite outgrowth. It may also play a role in the transferrin iron uptake pathw

>cd07869 STKc_PFTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-1 kinase

Probab=99.87  E-value=2.5e-21  Score=163.68  Aligned_cols=153  Identities=24%  Similarity=0.286  Sum_probs=116.2

Q ss_pred             cCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC-hhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEe
Q 047066          103 TNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY-QSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNE  180 (256)
Q Consensus       103 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e  180 (256)
                      .++|++.+.||+|+||.||+|..+ +++.+|+|.+.... ......+.+|+.+++.++||||+++++++...+..+++||
T Consensus         4 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e   83 (303)
T cd07869           4 ADSYEKLEKLGEGSYATVYKGKSKVNGKLVALKVIRLQEEEGTPFTAIREASLLKGLKHANIVLLHDIIHTKETLTLVFE   83 (303)
T ss_pred             cccceEeeeEEecCCEEEEEEEECCCCCEEEEEEeccccccccchhHHHHHHHHhhCCCCCcCeEEEEEecCCeEEEEEE
Confidence            367999999999999999999976 68899999886433 2223467889999999999999999999999999999999


Q ss_pred             cCCCC----------CCCHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceeeee
Q 047066          181 FVKLP----------TISWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTM  237 (256)
Q Consensus       181 ~~~~~----------~l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~~  237 (256)
                      |+.++          .++......++.|++             |||||+|||+++++.+||+|||+++........ ...
T Consensus        84 ~~~~~l~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~~-~~~  162 (303)
T cd07869          84 YVHTDLCQYMDKHPGGLHPENVKLFLFQLLRGLSYIHQRYILHRDLKPQNLLISDTGELKLADFGLARAKSVPSHT-YSN  162 (303)
T ss_pred             CCCcCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEECCCCCEEECCCCcceeccCCCcc-CCC
Confidence            99652          244444444555544             699999999999999999999999865432222 223


Q ss_pred             eeecccc---c-cc-ccCCCCCCC
Q 047066          238 VQGTLGY---Y-LH-TSQGTLNKE  256 (256)
Q Consensus       238 ~~Gt~~y---~-~~-~~~~t~ksD  256 (256)
                      ..||+.|   + +. ...++.++|
T Consensus       163 ~~~~~~y~aPE~~~~~~~~~~~~D  186 (303)
T cd07869         163 EVVTLWYRPPDVLLGSTEYSTCLD  186 (303)
T ss_pred             CcccCCCCChHHHcCCCCCCcHHH
Confidence            4578888   2 22 334566555

Serine/Threonine Kinases (STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-1 is widely expressed except in the spleen and thymus. It is highly expressed in the brain, heart, pancreas, testis, and ovary, and is localized in the cytoplasm. It is regulated by cyclin D3 an

>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]

Probab=99.87  E-value=1.1e-22  Score=180.06  Aligned_cols=148  Identities=24%  Similarity=0.348  Sum_probs=113.6

Q ss_pred             cccceeeeeCceEEEEEEEC-CCcEEEEEEecccC-hhHHHHHHHHHHHHHhCCCCcccceeeEEEECC------EEEEE
Q 047066          107 AYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY-QSQIEQCINKVVVLSQINHRNVVGLLGCCLETE------VPLLV  178 (256)
Q Consensus       107 ~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~------~~~lv  178 (256)
                      ...+.||+|+||.||+|+++ +|+.||||..+... ...++...+|+++|++++|||||++++.-.+..      ...++
T Consensus        16 ~~~e~LG~Ga~g~V~rgrnketG~~vAvK~~~~~~~~r~~e~~~~EieilkKLnh~NIVk~f~iee~~~~~~~~~~~vlv   95 (732)
T KOG4250|consen   16 EMDERLGKGAFGNVYRGRNKETGRLVAVKTFNKESSLRPRERWCREIEILKKLNHPNIVKLFDIEETKFLGLVTRLPVLV   95 (732)
T ss_pred             eehhhhcCCccceeeeecccccccchhHHhhhhhcccchHHHHHHHHHHHHHcCchhhhhhcccCCccccCcccccceEE
Confidence            34478999999999999965 79999999887643 455677889999999999999999999876543      57899


Q ss_pred             EecCCCCCC-------------CHHHH-------------HHHHHHHHhccCCCcEEE--cCCC--cEEEEecCCceecC
Q 047066          179 NEFVKLPTI-------------SWEVR-------------IRIAAETAEDIKSINILL--DDNY--TTKVCDFGASKLVP  228 (256)
Q Consensus       179 ~e~~~~~~l-------------~~~~~-------------~~~~~~i~rdlk~~NiLi--~~~~--~~ki~DFGla~~~~  228 (256)
                      ||||.+|+|             ++...             ++-...+||||||.||++  .++|  .-||+|||.|+.++
T Consensus        96 mEyC~gGsL~~~L~~PEN~~GLpE~e~l~lL~d~~~al~~LrEn~IvHRDlKP~NIvl~~Gedgq~IyKLtDfG~Arel~  175 (732)
T KOG4250|consen   96 MEYCSGGSLRKVLNSPENAYGLPESEFLDLLSDLVSALRHLRENGIVHRDLKPGNIVLQIGEDGQSIYKLTDFGAARELD  175 (732)
T ss_pred             EeecCCCcHHHHhcCcccccCCCHHHHHHHHHHHHHHHHHHHHcCceeccCCCCcEEEeecCCCceEEeeecccccccCC
Confidence            999999886             22222             233334669999999998  3444  57999999999987


Q ss_pred             CCCceeeeeeeecccc----ccc-ccCCCCCCC
Q 047066          229 IDETQLSTMVQGTLGY----YLH-TSQGTLNKE  256 (256)
Q Consensus       229 ~~~~~~~~~~~Gt~~y----~~~-~~~~t~ksD  256 (256)
                      ++.  ..+.+.||+.|    .+. .+.||.-+|
T Consensus       176 d~s--~~~S~vGT~~YLhPel~E~q~~y~~tVD  206 (732)
T KOG4250|consen  176 DNS--LFTSLVGTEEYLHPELYERQKKYTATVD  206 (732)
T ss_pred             CCC--eeeeecCchhhcChHHHhhccCcCceee
Confidence            665  45667899999    333 356665554

>cd07871 STKc_PCTAIRE3 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase

Probab=99.87  E-value=2.1e-21  Score=162.95  Aligned_cols=152  Identities=22%  Similarity=0.299  Sum_probs=115.3

Q ss_pred             CCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC-hhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEec
Q 047066          104 NNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY-QSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEF  181 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~  181 (256)
                      ++|.+.+.||+|+||.||+|..+ ++..||+|.++... ......+.+|+.+++.++||||+++++++...+..+++|||
T Consensus         5 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~   84 (288)
T cd07871           5 ETYVKLDKLGEGTYATVFKGRSKLTENLVALKEIRLEHEEGAPCTAIREVSLLKNLKHANIVTLHDIIHTERCLTLVFEY   84 (288)
T ss_pred             ccceEeeEEecCCCEEEEEEEECCCCCEEEEEEecccccCCcchhHHHHHHHHHhCCCCCEeeEEEEEcCCCeEEEEEeC
Confidence            56889999999999999999865 68899999886433 22335678999999999999999999999999999999999


Q ss_pred             CCCC----------CCCHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceeeeee
Q 047066          182 VKLP----------TISWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMV  238 (256)
Q Consensus       182 ~~~~----------~l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~~~  238 (256)
                      +++.          .++......++.|++             |||||+|||+++++.+||+|||+++........ ....
T Consensus        85 ~~~~l~~~l~~~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivH~dlkp~Nil~~~~~~~kl~DfG~~~~~~~~~~~-~~~~  163 (288)
T cd07871          85 LDSDLKQYLDNCGNLMSMHNVKIFMFQLLRGLSYCHKRKILHRDLKPQNLLINEKGELKLADFGLARAKSVPTKT-YSNE  163 (288)
T ss_pred             CCcCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEEECCCCCEEECcCcceeeccCCCcc-ccCc
Confidence            9751          133444444444444             799999999999999999999999875433222 2233


Q ss_pred             eecccc----cc-cccCCCCCCC
Q 047066          239 QGTLGY----YL-HTSQGTLNKE  256 (256)
Q Consensus       239 ~Gt~~y----~~-~~~~~t~ksD  256 (256)
                      .||+.|    .+ ....++.++|
T Consensus       164 ~~~~~y~aPE~~~~~~~~~~~~D  186 (288)
T cd07871         164 VVTLWYRPPDVLLGSTEYSTPID  186 (288)
T ss_pred             eecccccChHHhcCCcccCcHHH
Confidence            578888    22 2345666665

Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filament

>cd06649 PKc_MEK2 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2

Probab=99.87  E-value=3.9e-21  Score=164.58  Aligned_cols=152  Identities=20%  Similarity=0.268  Sum_probs=120.9

Q ss_pred             hcCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC-hhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEE
Q 047066          102 ATNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY-QSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVN  179 (256)
Q Consensus       102 ~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~  179 (256)
                      ..++|++.+.||+|+||.||++..+ ++..+|+|.+.... ....+.+.+|++++++++||||+++++++...+..+++|
T Consensus         3 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~   82 (331)
T cd06649           3 KDDDFERISELGAGNGGVVTKVQHKPSGLIMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICM   82 (331)
T ss_pred             CcccceEEEeecCCCCEEEEEEEECCCCcEEEEEEeecccCHHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEEEe
Confidence            3578999999999999999999975 67889999876543 344567999999999999999999999999999999999


Q ss_pred             ecCCCCCCCH----------HHHHHHHHH--------------HHhccCCCcEEEcCCCcEEEEecCCceecCCCCceee
Q 047066          180 EFVKLPTISW----------EVRIRIAAE--------------TAEDIKSINILLDDNYTTKVCDFGASKLVPIDETQLS  235 (256)
Q Consensus       180 e~~~~~~l~~----------~~~~~~~~~--------------i~rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~  235 (256)
                      ||+++++|..          .....++.+              +|+||||+|||++.++.+||+|||+++.+....   .
T Consensus        83 e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~---~  159 (331)
T cd06649          83 EHMDGGSLDQVLKEAKRIPEEILGKVSIAVLRGLAYLREKHQIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSM---A  159 (331)
T ss_pred             ecCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhhcCCEEcCCCChhhEEEcCCCcEEEccCcccccccccc---c
Confidence            9999977632          222233322              347999999999999999999999998764322   2


Q ss_pred             eeeeecccc----cccccCCCCCCC
Q 047066          236 TMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       236 ~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      ....||+.|    .+.+..++.++|
T Consensus       160 ~~~~g~~~y~aPE~~~~~~~~~~~D  184 (331)
T cd06649         160 NSFVGTRSYMSPERLQGTHYSVQSD  184 (331)
T ss_pred             ccCCCCcCcCCHhHhcCCCCCchHh
Confidence            234588888    555667888877

Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downst

>cd05627 STKc_NDR2 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2

Probab=99.87  E-value=3.1e-21  Score=167.06  Aligned_cols=124  Identities=27%  Similarity=0.305  Sum_probs=102.6

Q ss_pred             CCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC---hhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEE
Q 047066          104 NNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY---QSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVN  179 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~  179 (256)
                      ++|+..+.||+|+||.||++..+ +++.+|+|.+....   ......+.+|+.++..++||||+++++.+.+.+..++||
T Consensus         1 ~~f~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~iv~~~~~~~~~~~~~lv~   80 (360)
T cd05627           1 DDFESLKVIGRGAFGEVRLVQKKDTGHIYAMKILRKADMLEKEQVAHIRAERDILVEADGAWVVKMFYSFQDKRNLYLIM   80 (360)
T ss_pred             CCceEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCEEEEEE
Confidence            36888899999999999999875 68899999886432   334467888999999999999999999999999999999


Q ss_pred             ecCCCCCC----------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceec
Q 047066          180 EFVKLPTI----------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLV  227 (256)
Q Consensus       180 e~~~~~~l----------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~  227 (256)
                      ||+++++|          +......++.|++             |||||+|||++.++.+||+|||+++.+
T Consensus        81 E~~~gg~L~~~l~~~~~l~~~~~~~~~~qi~~~L~~lH~~givHrDLkp~NIli~~~~~vkL~DfG~~~~~  151 (360)
T cd05627          81 EFLPGGDMMTLLMKKDTLSEEATQFYIAETVLAIDAIHQLGFIHRDIKPDNLLLDAKGHVKLSDFGLCTGL  151 (360)
T ss_pred             eCCCCccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeEccCCCHHHEEECCCCCEEEeeccCCccc
Confidence            99998765          3333334444433             799999999999999999999998754

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. In addition, NDR2 plays a role in regul

>KOG4257 consensus Focal adhesion tyrosine kinase FAK, contains FERM domain [Signal transduction mechanisms]

Probab=99.86  E-value=4.5e-22  Score=174.09  Aligned_cols=161  Identities=20%  Similarity=0.366  Sum_probs=126.7

Q ss_pred             ChHHHHhhcCCCcccceeeeeCceEEEEEEECC-----CcEEEEEEecc-cChhHHHHHHHHHHHHHhCCCCcccceeeE
Q 047066           95 TAGELKIATNNYAYDRMIGRGGYGTVFLGSLSD-----NKAIAIKKSRI-VYQSQIEQCINKVVVLSQINHRNVVGLLGC  168 (256)
Q Consensus        95 ~~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~-----~~~vavK~~~~-~~~~~~~~~~~E~~~l~~l~h~niv~l~~~  168 (256)
                      +...+++.++...+.++||+|-||.||+|...+     .-.||||..+. ...+..+.|+.|+-+|++++||||++++|+
T Consensus       380 ~~rnyel~Re~Itl~r~iG~GqFGdVy~gvYt~~~kge~iaVAvKtCK~d~t~d~tekflqEa~iMrnfdHphIikLIGv  459 (974)
T KOG4257|consen  380 TVRNYELRRELITLKRLIGEGQFGDVYKGVYTDPEKGERIAVAVKTCKTDCTPDDTEKFLQEASIMRNFDHPHIIKLIGV  459 (974)
T ss_pred             CCCcceeehhhccHHHhhcCCcccceeeeEecccccCcceeeeeehhccCCChhhHHHHHHHHHHHHhCCCcchhheeee
Confidence            344566777778888999999999999998532     23789998876 446778899999999999999999999999


Q ss_pred             EEECCEEEEEEecCCCCCCC-----------HHHHHHHHHH-------------HHhccCCCcEEEcCCCcEEEEecCCc
Q 047066          169 CLETEVPLLVNEFVKLPTIS-----------WEVRIRIAAE-------------TAEDIKSINILLDDNYTTKVCDFGAS  224 (256)
Q Consensus       169 ~~~~~~~~lv~e~~~~~~l~-----------~~~~~~~~~~-------------i~rdlk~~NiLi~~~~~~ki~DFGla  224 (256)
                      |... ..|+|||.+..|.|.           .......+.|             +||||.++|||+.....|||+|||++
T Consensus       460 ~~e~-P~WivmEL~~~GELr~yLq~nk~sL~l~tL~ly~~Qi~talaYLeSkrfVHRDIAaRNiLVsSp~CVKLaDFGLS  538 (974)
T KOG4257|consen  460 CVEQ-PMWIVMELAPLGELREYLQQNKDSLPLRTLTLYCYQICTALAYLESKRFVHRDIAARNILVSSPQCVKLADFGLS  538 (974)
T ss_pred             eecc-ceeEEEecccchhHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhchhhhhhhhhheeecCcceeeecccchh
Confidence            9874 589999999887653           3333334444             44899999999999999999999999


Q ss_pred             eecCCCCceeeeeeeecccc----cccccCCCCCCC
Q 047066          225 KLVPIDETQLSTMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       225 ~~~~~~~~~~~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      |.++++..+..+...=...|    -++..+||.+||
T Consensus       539 R~~ed~~yYkaS~~kLPIKWmaPESINfRrFTtASD  574 (974)
T KOG4257|consen  539 RYLEDDAYYKASRGKLPIKWMAPESINFRRFTTASD  574 (974)
T ss_pred             hhccccchhhccccccceeecCccccchhcccchhh
Confidence            99987766655533233344    677788898887

>cd05573 STKc_ROCK_NDR_like Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases

Probab=99.86  E-value=3.1e-21  Score=166.18  Aligned_cols=153  Identities=25%  Similarity=0.297  Sum_probs=121.7

Q ss_pred             CCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC---hhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEE
Q 047066          104 NNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY---QSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVN  179 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~  179 (256)
                      ++|.+.+.||+|+||.||+|... +++.||+|.+....   ......+..|+.++..++||||+++++++.+.+..++||
T Consensus         1 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~   80 (350)
T cd05573           1 DDFEVIKVIGRGAFGEVWLVRDKDTGQVYAMKVLRKSDMIKRNQIAHVRAERDILADADSPWIVKLYYSFQDEEHLYLVM   80 (350)
T ss_pred             CCceEEEEEEeCCcEEEEEEEECCCCCEEEEEEEEHHHHhhccHHHHHHHHHHHHHhcCCCCccchhhheecCCeEEEEE
Confidence            36888999999999999999975 68899999886432   234567889999999999999999999999999999999


Q ss_pred             ecCCCCCC----------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCC-----
Q 047066          180 EFVKLPTI----------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDE-----  231 (256)
Q Consensus       180 e~~~~~~l----------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~-----  231 (256)
                      ||+++++|          +......++.|++             +||||+|||++.++.+||+|||+++.+....     
T Consensus        81 e~~~~~~L~~~l~~~~~l~~~~~~~i~~qi~~aL~~LH~~giiH~Dlkp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~  160 (350)
T cd05573          81 EYMPGGDLMNLLIRKDVFPEETARFYIAELVLALDSVHKLGFIHRDIKPDNILIDADGHIKLADFGLCKKMNKAKDREYY  160 (350)
T ss_pred             cCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHeEECCCCCEEeecCCCCccCcccCccccc
Confidence            99988654          4444444454444             6999999999999999999999998765433     


Q ss_pred             -----------------------ceeeeeeeecccc----cccccCCCCCCC
Q 047066          232 -----------------------TQLSTMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       232 -----------------------~~~~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                                             ........||+.|    .+.+..++.++|
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~D  212 (350)
T cd05573         161 LNDSHNLLFRDNVLVRRRDHKQRRVRANSTVGTPDYIAPEVLRGTPYGLECD  212 (350)
T ss_pred             ccccccccccccccccccccccccccccccccCccccCHHHHcCCCCCCcee
Confidence                                   0112234689999    556667888887

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the

>cd05618 STKc_aPKC_iota Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C iota

Probab=99.86  E-value=7.3e-21  Score=162.81  Aligned_cols=146  Identities=27%  Similarity=0.339  Sum_probs=114.1

Q ss_pred             ceeeeeCceEEEEEEEC-CCcEEEEEEeccc---ChhHHHHHHHHHHHHHhC-CCCcccceeeEEEECCEEEEEEecCCC
Q 047066          110 RMIGRGGYGTVFLGSLS-DNKAIAIKKSRIV---YQSQIEQCINKVVVLSQI-NHRNVVGLLGCCLETEVPLLVNEFVKL  184 (256)
Q Consensus       110 ~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~lv~e~~~~  184 (256)
                      +.||+|+||.||++..+ +++.+|+|.+...   .......+..|..++.++ +||||+++++++...+..+++|||+++
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~~~~~~~~~~~~~lv~E~~~~   80 (329)
T cd05618           1 RVIGRGSYAKVLLVRLKKTERIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFFVIEYVNG   80 (329)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEhhHhcchhHHHHHHHHHHHHHhcCCCCcCCceeeEEEeCCEEEEEEeCCCC
Confidence            46999999999999975 5789999988643   233446678899988877 899999999999999999999999998


Q ss_pred             CCC----------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceeeeeeeec
Q 047066          185 PTI----------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGT  241 (256)
Q Consensus       185 ~~l----------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~~~~Gt  241 (256)
                      ++|          ++.....++.+++             |||||+|||++.++.+||+|||+++........ .....||
T Consensus        81 ~~L~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~ivH~Dikp~Nili~~~~~~kL~DfG~~~~~~~~~~~-~~~~~gt  159 (329)
T cd05618          81 GDLMFHMQRQRKLPEEHARFYSAEISLALNYLHERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPGDT-TSTFCGT  159 (329)
T ss_pred             CCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeeeCCCCHHHEEECCCCCEEEeeCCccccccCCCCc-cccccCC
Confidence            765          3333444444444             699999999999999999999999864322221 2345699


Q ss_pred             ccc----cccccCCCCCCC
Q 047066          242 LGY----YLHTSQGTLNKE  256 (256)
Q Consensus       242 ~~y----~~~~~~~t~ksD  256 (256)
                      +.|    .+.+..++.++|
T Consensus       160 ~~y~aPE~~~~~~~~~~~D  178 (329)
T cd05618         160 PNYIAPEILRGEDYGFSVD  178 (329)
T ss_pred             ccccCHHHHcCCCCCCccc
Confidence            999    566777888887

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, iota isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target o

>cd05587 STKc_cPKC Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C

Probab=99.86  E-value=7.3e-21  Score=162.41  Aligned_cols=151  Identities=22%  Similarity=0.278  Sum_probs=117.8

Q ss_pred             CCcccceeeeeCceEEEEEEEC-CCcEEEEEEeccc---ChhHHHHHHHHHHHHHhCCC-CcccceeeEEEECCEEEEEE
Q 047066          105 NYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIV---YQSQIEQCINKVVVLSQINH-RNVVGLLGCCLETEVPLLVN  179 (256)
Q Consensus       105 ~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~h-~niv~l~~~~~~~~~~~lv~  179 (256)
                      +|++.+.||+|+||.||+|..+ +++.+|+|.+...   .....+.+..|..++..++| ++|+++++++...+..+++|
T Consensus         1 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~   80 (324)
T cd05587           1 DFNFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVIIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLYFVM   80 (324)
T ss_pred             CceEEEEEeeccCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhcCCCCceeeeEEEEEcCCEEEEEE
Confidence            4788899999999999999975 5788999988643   23445678889999999965 56888999999999999999


Q ss_pred             ecCCCCCC----------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceeee
Q 047066          180 EFVKLPTI----------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLST  236 (256)
Q Consensus       180 e~~~~~~l----------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~  236 (256)
                      ||+++++|          ++.....++.|++             |||||+|||++.++.+||+|||+++....... ...
T Consensus        81 E~~~~g~L~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~ivH~dlkp~Nill~~~~~~kL~Dfg~~~~~~~~~~-~~~  159 (324)
T cd05587          81 EYVNGGDLMYHIQQVGKFKEPHAVFYAAEIAIGLFFLHSKGIIYRDLKLDNVMLDAEGHIKIADFGMCKENIFGGK-TTR  159 (324)
T ss_pred             cCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeEecCCCHHHeEEcCCCCEEEeecCcceecCCCCC-cee
Confidence            99998775          3444445555544             69999999999999999999999975432222 223


Q ss_pred             eeeecccc----cccccCCCCCCC
Q 047066          237 MVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       237 ~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      ..+||+.|    .+.+..++.++|
T Consensus       160 ~~~gt~~y~aPE~~~~~~~~~~~D  183 (324)
T cd05587         160 TFCGTPDYIAPEIIAYQPYGKSVD  183 (324)
T ss_pred             eecCCccccChhhhcCCCCCcccc
Confidence            45699999    566677888887

Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory

>cd05614 STKc_MSK2_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2

Probab=99.86  E-value=6.7e-21  Score=163.09  Aligned_cols=152  Identities=24%  Similarity=0.269  Sum_probs=116.5

Q ss_pred             CCcccceeeeeCceEEEEEEE----CCCcEEEEEEecccC----hhHHHHHHHHHHHHHhC-CCCcccceeeEEEECCEE
Q 047066          105 NYAYDRMIGRGGYGTVFLGSL----SDNKAIAIKKSRIVY----QSQIEQCINKVVVLSQI-NHRNVVGLLGCCLETEVP  175 (256)
Q Consensus       105 ~~~~~~~lg~G~~g~V~~~~~----~~~~~vavK~~~~~~----~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~  175 (256)
                      +|++.+.||+|+||.||+++.    .++..+|+|.+....    ....+.+..|+.++..+ +||||+++++++...+..
T Consensus         1 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~   80 (332)
T cd05614           1 NFELLKVLGTGAYGKVFLVRKVTGHDTGKLYAMKVLQKAALVQKAKTVEHTRTERNVLEHVRQSPFLVTLHYAFQTEAKL   80 (332)
T ss_pred             CceEEEEEeecCCEEEEEEEEcccCCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHHhccCCCCcccEEEEEecCCEE
Confidence            478889999999999999875    257899999875421    23345678899999999 599999999999999999


Q ss_pred             EEEEecCCCCCC----------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCc
Q 047066          176 LLVNEFVKLPTI----------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDET  232 (256)
Q Consensus       176 ~lv~e~~~~~~l----------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~  232 (256)
                      +++|||+++++|          ++.....++.|++             |||||+|||++.++.+||+|||+++.......
T Consensus        81 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivHrDlkp~Nili~~~~~~kl~DfG~~~~~~~~~~  160 (332)
T cd05614          81 HLILDYVSGGEMFTHLYQRDNFSEDEVRFYSGEIILALEHLHKLGIVYRDIKLENILLDSEGHVVLTDFGLSKEFLSEEK  160 (332)
T ss_pred             EEEEeCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCcEecCCCHHHeEECCCCCEEEeeCcCCccccccCC
Confidence            999999998765          3333344444443             79999999999999999999999987644433


Q ss_pred             eeeeeeeecccc----cccc-cCCCCCCC
Q 047066          233 QLSTMVQGTLGY----YLHT-SQGTLNKE  256 (256)
Q Consensus       233 ~~~~~~~Gt~~y----~~~~-~~~t~ksD  256 (256)
                      .......||+.|    .+.+ ..++.++|
T Consensus       161 ~~~~~~~gt~~y~aPE~~~~~~~~~~~~D  189 (332)
T cd05614         161 ERTYSFCGTIEYMAPEIIRGKGGHGKAVD  189 (332)
T ss_pred             CccccccCCccccCHHHhcCCCCCCCccc
Confidence            333345699999    3333 23677777

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>cd05105 PTKc_PDGFR_alpha Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha

Probab=99.86  E-value=4.7e-21  Score=167.94  Aligned_cols=92  Identities=18%  Similarity=0.420  Sum_probs=77.6

Q ss_pred             HHHHhhcCCCcccceeeeeCceEEEEEEEC------CCcEEEEEEecccC-hhHHHHHHHHHHHHHhCC-CCcccceeeE
Q 047066           97 GELKIATNNYAYDRMIGRGGYGTVFLGSLS------DNKAIAIKKSRIVY-QSQIEQCINKVVVLSQIN-HRNVVGLLGC  168 (256)
Q Consensus        97 ~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~------~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~-h~niv~l~~~  168 (256)
                      ..+..+.++|.+.+.||+|+||.||+|...      .+..||+|++.... ....+.+.+|+.++++++ ||||++++++
T Consensus        30 ~~~~~~~~~~~~~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~Ei~~l~~l~~HpnIv~l~~~  109 (400)
T cd05105          30 SRWEFPRDGLVLGRILGSGAFGKVVEGTAYGLSRSQPVMKVAVKMLKPTARSSEKQALMSELKIMTHLGPHLNIVNLLGA  109 (400)
T ss_pred             CceeccccceehhheecCCCCceEEEEEEcccCCCCCceEEEEEecCCCCChHHHHHHHHHHHHHHhcCCCCCeeeEEEE
Confidence            467777889999999999999999999852      13479999886543 344567999999999995 9999999999


Q ss_pred             EEECCEEEEEEecCCCCCCC
Q 047066          169 CLETEVPLLVNEFVKLPTIS  188 (256)
Q Consensus       169 ~~~~~~~~lv~e~~~~~~l~  188 (256)
                      |...+..+++|||+++|+|.
T Consensus       110 ~~~~~~~~lv~Ey~~~g~L~  129 (400)
T cd05105         110 CTKSGPIYIITEYCFYGDLV  129 (400)
T ss_pred             EccCCceEEEEEecCCCcHH
Confidence            99999999999999887763

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF-

>cd05616 STKc_cPKC_beta Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta

Probab=99.86  E-value=6.7e-21  Score=162.57  Aligned_cols=151  Identities=23%  Similarity=0.288  Sum_probs=118.3

Q ss_pred             CCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC---hhHHHHHHHHHHHHHhC-CCCcccceeeEEEECCEEEEEE
Q 047066          105 NYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY---QSQIEQCINKVVVLSQI-NHRNVVGLLGCCLETEVPLLVN  179 (256)
Q Consensus       105 ~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~lv~  179 (256)
                      +|.+.+.||+|+||.||+|..+ +++.+|+|.+....   ....+....|..++..+ +|++|+++++++...+..++||
T Consensus         1 df~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~   80 (323)
T cd05616           1 DFNFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVVIQDDDVECTMVEKRVLALSGKPPFLTQLHSCFQTMDRLYFVM   80 (323)
T ss_pred             CceEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCeEeeEEEEEecCCEEEEEE
Confidence            4778899999999999999875 57899999876432   23345677788888877 6899999999999999999999


Q ss_pred             ecCCCCCC----------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceeee
Q 047066          180 EFVKLPTI----------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLST  236 (256)
Q Consensus       180 e~~~~~~l----------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~  236 (256)
                      ||+++++|          ++.....++.|++             |||||+|||+++++.+||+|||+++........ ..
T Consensus        81 E~~~~g~L~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~Nill~~~~~~kL~DfG~~~~~~~~~~~-~~  159 (323)
T cd05616          81 EYVNGGDLMYQIQQVGRFKEPHAVFYAAEIAIGLFFLHSKGIIYRDLKLDNVMLDSEGHIKIADFGMCKENMWDGVT-TK  159 (323)
T ss_pred             cCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCEEecCCCHHHeEECCCCcEEEccCCCceecCCCCCc-cc
Confidence            99998765          3344455555544             699999999999999999999999864322222 23


Q ss_pred             eeeecccc----cccccCCCCCCC
Q 047066          237 MVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       237 ~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      ..+||+.|    .+.++.++.++|
T Consensus       160 ~~~gt~~y~aPE~~~~~~~~~~~D  183 (323)
T cd05616         160 TFCGTPDYIAPEIIAYQPYGKSVD  183 (323)
T ss_pred             cCCCChhhcCHHHhcCCCCCCccc
Confidence            45699999    666778888887

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and

>KOG0574 consensus STE20-like serine/threonine kinase MST [Signal transduction mechanisms]

Probab=99.86  E-value=3.1e-23  Score=167.66  Aligned_cols=150  Identities=21%  Similarity=0.294  Sum_probs=122.0

Q ss_pred             CCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEecC
Q 047066          104 NNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEFV  182 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~  182 (256)
                      +-|.+...||+|+||.||++.++ .|+.+|+|++...  .+.+.+.+|+.++++++.|++|++||.+.....+|+|||||
T Consensus        33 EVFDi~~KLGEGSYGSV~KAIH~EsG~v~AIK~VPV~--sDLQEIIKEISIMQQC~S~yVVKYYGSYFK~sDLWIVMEYC  110 (502)
T KOG0574|consen   33 EVFDIVGKLGEGSYGSVHKAIHRESGHVLAIKKVPVD--TDLQEIIKEISIMQQCKSKYVVKYYGSYFKHSDLWIVMEYC  110 (502)
T ss_pred             HHHHHHHHhcCCcchHHHHHHHhccCcEEEEEecCcc--chHHHHHHHHHHHHHcCCchhhhhhhhhccCCceEeehhhc
Confidence            45777889999999999999876 6999999987653  45688999999999999999999999998888899999999


Q ss_pred             CCCCCC------------------------HHHHHHHHHHHHhccCCCcEEEcCCCcEEEEecCCceecCCCCceeeeee
Q 047066          183 KLPTIS------------------------WEVRIRIAAETAEDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMV  238 (256)
Q Consensus       183 ~~~~l~------------------------~~~~~~~~~~i~rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~~~  238 (256)
                      ..|+++                        -.+.++...-||||||+.|||++.+|.+||+|||.|..+.+.... .+++
T Consensus       111 GAGSiSDI~R~R~K~L~E~EIs~iL~~TLKGL~YLH~~~KIHRDIKAGNILLNT~G~AKLADFGVAGQLTDTMAK-RNTV  189 (502)
T KOG0574|consen  111 GAGSISDIMRARRKPLSEQEISAVLRDTLKGLQYLHDLKKIHRDIKAGNILLNTDGIAKLADFGVAGQLTDTMAK-RNTV  189 (502)
T ss_pred             CCCcHHHHHHHhcCCccHHHHHHHHHHHHhHHHHHHHHHHHHhhcccccEEEcccchhhhhhccccchhhhhHHh-hCcc
Confidence            887753                        234467778899999999999999999999999999987644332 3456


Q ss_pred             eecccc----cccccCCCCCCC
Q 047066          239 QGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       239 ~Gt~~y----~~~~~~~t~ksD  256 (256)
                      .|||.|    .+..--|..++|
T Consensus       190 IGTPFWMAPEVI~EIGY~~~AD  211 (502)
T KOG0574|consen  190 IGTPFWMAPEVIEEIGYDTKAD  211 (502)
T ss_pred             ccCcccccHHHHHHhccchhhh
Confidence            799988    444444444443

>cd05589 STKc_PKN Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N

Probab=99.86  E-value=5e-21  Score=163.43  Aligned_cols=150  Identities=23%  Similarity=0.263  Sum_probs=115.6

Q ss_pred             CcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC---hhHHHHHHHHHHHH---HhCCCCcccceeeEEEECCEEEEE
Q 047066          106 YAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY---QSQIEQCINKVVVL---SQINHRNVVGLLGCCLETEVPLLV  178 (256)
Q Consensus       106 ~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l---~~l~h~niv~l~~~~~~~~~~~lv  178 (256)
                      |++.+.||+|+||.||++..+ +++.||+|.++...   ....+.+..|..++   +.++||||+++++++...+..++|
T Consensus         1 y~i~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~l~~e~~~~~~~~~l~hp~i~~~~~~~~~~~~~~lv   80 (324)
T cd05589           1 FRCLAVLGRGHFGKVLLAEYKKTGELYAIKALKKGDIIARDEVESLMCEKRIFETANSERHPFLVNLFACFQTEDHVCFV   80 (324)
T ss_pred             CeEEEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccccCCCChhceeeEEEcCCEEEEE
Confidence            567789999999999999865 68899999886432   23345667776665   466799999999999999999999


Q ss_pred             EecCCCCCC---------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceeee
Q 047066          179 NEFVKLPTI---------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLST  236 (256)
Q Consensus       179 ~e~~~~~~l---------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~  236 (256)
                      |||+++++|         ++.....++.+++             |||||+|||+++++.+||+|||+++....... ...
T Consensus        81 ~E~~~~~~L~~~~~~~~l~~~~~~~~~~qi~~al~~lH~~~ivHrdlkp~Nill~~~~~~kL~Dfg~~~~~~~~~~-~~~  159 (324)
T cd05589          81 MEYAAGGDLMMHIHTDVFSEPRAVFYAACVVLGLQYLHENKIVYRDLKLDNLLLDTEGFVKIADFGLCKEGMGFGD-RTS  159 (324)
T ss_pred             EcCCCCCcHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhCCeEecCCCHHHeEECCCCcEEeCcccCCccCCCCCC-ccc
Confidence            999988664         4555555555544             69999999999999999999999875432222 123


Q ss_pred             eeeecccc----cccccCCCCCCC
Q 047066          237 MVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       237 ~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      ..+||+.|    .+.+..++.++|
T Consensus       160 ~~~g~~~y~aPE~~~~~~~~~~~D  183 (324)
T cd05589         160 TFCGTPEFLAPEVLTETSYTRAVD  183 (324)
T ss_pred             ccccCccccCHhHhcCCCCCcccc
Confidence            45699999    555667788877

Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved

>PLN00034 mitogen-activated protein kinase kinase; Provisional

Probab=99.86  E-value=4.3e-21  Score=165.71  Aligned_cols=141  Identities=22%  Similarity=0.266  Sum_probs=112.8

Q ss_pred             cCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC-hhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEe
Q 047066          103 TNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY-QSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNE  180 (256)
Q Consensus       103 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e  180 (256)
                      .++|+..+.||+|+||.||++... +++.||+|.+.... ......+.+|+.+++.++|+||+++++++...+..+++||
T Consensus        73 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e  152 (353)
T PLN00034         73 LSELERVNRIGSGAGGTVYKVIHRPTGRLYALKVIYGNHEDTVRRQICREIEILRDVNHPNVVKCHDMFDHNGEIQVLLE  152 (353)
T ss_pred             HHHHhhhhhccCCCCeEEEEEEECCCCCEEEEEEEecCCcHHHHHHHHHHHHHHHhCCCCCcceeeeEeccCCeEEEEEe
Confidence            346777789999999999999965 68899999886443 3345678999999999999999999999999999999999


Q ss_pred             cCCCCCCC------HHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceeeeeeeec
Q 047066          181 FVKLPTIS------WEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGT  241 (256)
Q Consensus       181 ~~~~~~l~------~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~~~~Gt  241 (256)
                      |+++++|.      ......++.|++             +||||+|||+++++.+||+|||+++.+...... .....||
T Consensus       153 ~~~~~~L~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~~~~kL~DfG~~~~~~~~~~~-~~~~~gt  231 (353)
T PLN00034        153 FMDGGSLEGTHIADEQFLADVARQILSGIAYLHRRHIVHRDIKPSNLLINSAKNVKIADFGVSRILAQTMDP-CNSSVGT  231 (353)
T ss_pred             cCCCCcccccccCCHHHHHHHHHHHHHHHHHHHHCCEeecCCCHHHEEEcCCCCEEEcccccceeccccccc-ccccccC
Confidence            99998763      333344444443             699999999999999999999999876533221 2234588


Q ss_pred             ccc
Q 047066          242 LGY  244 (256)
Q Consensus       242 ~~y  244 (256)
                      +.|
T Consensus       232 ~~y  234 (353)
T PLN00034        232 IAY  234 (353)
T ss_pred             ccc
Confidence            888

>cd06650 PKc_MEK1 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1

Probab=99.86  E-value=5.6e-21  Score=163.80  Aligned_cols=152  Identities=21%  Similarity=0.277  Sum_probs=119.0

Q ss_pred             hcCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEeccc-ChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEE
Q 047066          102 ATNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIV-YQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVN  179 (256)
Q Consensus       102 ~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~  179 (256)
                      ..++|++.+.||+|+||.||++... ++..+|+|.+... .......+.+|+++++.++||||+++++++...+..+++|
T Consensus         3 ~~~~y~~~~~lg~g~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~   82 (333)
T cd06650           3 KDDDFEKISELGAGNGGVVFKVSHKPSGLIMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICM   82 (333)
T ss_pred             chhhhheeccccCCCCEEEEEEEECCCCcEEEEEEeecccCHHHHHHHHHHHHHHHHCCCCcccceeEEEEECCEEEEEE
Confidence            4578999999999999999999976 5788899987654 3344567899999999999999999999999999999999


Q ss_pred             ecCCCCCCCHH----------HHHHHHHH--------------HHhccCCCcEEEcCCCcEEEEecCCceecCCCCceee
Q 047066          180 EFVKLPTISWE----------VRIRIAAE--------------TAEDIKSINILLDDNYTTKVCDFGASKLVPIDETQLS  235 (256)
Q Consensus       180 e~~~~~~l~~~----------~~~~~~~~--------------i~rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~  235 (256)
                      ||+++++|...          ....++.+              +|+||||+|||+++++.+||+|||++..+....   .
T Consensus        83 e~~~~~~L~~~l~~~~~~~~~~~~~~~~~l~~~l~~lH~~~~ivH~dlkp~Nili~~~~~~kL~Dfg~~~~~~~~~---~  159 (333)
T cd06650          83 EHMDGGSLDQVLKKAGRIPEQILGKVSIAVIKGLTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSM---A  159 (333)
T ss_pred             ecCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhcCCEEecCCChhhEEEcCCCCEEEeeCCcchhhhhhc---c
Confidence            99999876422          22222222              346999999999999999999999998653321   1


Q ss_pred             eeeeecccc----cccccCCCCCCC
Q 047066          236 TMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       236 ~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      ....||+.|    .+.+..++.++|
T Consensus       160 ~~~~~~~~y~aPE~~~~~~~~~~~D  184 (333)
T cd06650         160 NSFVGTRSYMSPERLQGTHYSVQSD  184 (333)
T ss_pred             ccCCCCccccCHHHhcCCCCCcHHH
Confidence            234588888    455556777766

Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downst

>cd05072 PTKc_Lyn Catalytic domain of the Protein Tyrosine Kinase, Lyn

Probab=99.86  E-value=2.8e-21  Score=159.59  Aligned_cols=156  Identities=16%  Similarity=0.349  Sum_probs=121.6

Q ss_pred             HhhcCCCcccceeeeeCceEEEEEEECCCcEEEEEEecccChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEE
Q 047066          100 KIATNNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVN  179 (256)
Q Consensus       100 ~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~  179 (256)
                      .+..++|++.+.||+|+||.||+|...++..+++|.+..... ..+.+.+|+.+++.++|+||+++++.+...+..++++
T Consensus         2 ~~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~v~iK~~~~~~~-~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~   80 (261)
T cd05072           2 EIPRESIKLVKKLGAGQFGEVWMGYYNNSTKVAVKTLKPGTM-SVQAFLEEANLMKTLQHDKLVRLYAVVTKEEPIYIIT   80 (261)
T ss_pred             cCchHHeEEeeecCCcCCceEEEEEecCCceEEEEEccCCch-hHHHHHHHHHHHHhCCCCCeeeEEEEEcCCCCcEEEE
Confidence            455678999999999999999999987888899998765332 3477899999999999999999999999999999999


Q ss_pred             ecCCCCCCC------------HHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCcee
Q 047066          180 EFVKLPTIS------------WEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQL  234 (256)
Q Consensus       180 e~~~~~~l~------------~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~  234 (256)
                      ||+.+++|.            +.....++.+++             +||+|+||++++++.+||+|||++..........
T Consensus        81 e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~LH~~~i~H~dl~p~nili~~~~~~~l~dfg~~~~~~~~~~~~  160 (261)
T cd05072          81 EYMAKGSLLDFLKSDEGGKVLLPKLIDFSAQIAEGMAYIERKNYIHRDLRAANVLVSESLMCKIADFGLARVIEDNEYTA  160 (261)
T ss_pred             ecCCCCcHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCeeccccchhhEEecCCCcEEECCCccceecCCCceec
Confidence            999887653            333344444444             6999999999999999999999998765433222


Q ss_pred             eeeeeecccc----cccccCCCCCCC
Q 047066          235 STMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       235 ~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      .....++..|    +...+.+++++|
T Consensus       161 ~~~~~~~~~y~aPE~~~~~~~~~~~D  186 (261)
T cd05072         161 REGAKFPIKWTAPEAINFGSFTIKSD  186 (261)
T ss_pred             cCCCccceecCCHHHhccCCCChhhh
Confidence            2223355566    455667777776

Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth fa

>cd05106 PTKc_CSF-1R Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor

Probab=99.86  E-value=3e-21  Score=167.99  Aligned_cols=161  Identities=20%  Similarity=0.401  Sum_probs=122.6

Q ss_pred             hHHHHhhcCCCcccceeeeeCceEEEEEEEC------CCcEEEEEEecccC-hhHHHHHHHHHHHHHhC-CCCcccceee
Q 047066           96 AGELKIATNNYAYDRMIGRGGYGTVFLGSLS------DNKAIAIKKSRIVY-QSQIEQCINKVVVLSQI-NHRNVVGLLG  167 (256)
Q Consensus        96 ~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~------~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l-~h~niv~l~~  167 (256)
                      .+.|..+.++|++.+.||+|+||.||++...      ++..||+|.+.... ....+.+.+|+.+++.+ +|+||+++++
T Consensus        30 ~~~~~~~~~~~~~~~~LG~G~fg~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~il~~l~~h~nIv~~~~  109 (374)
T cd05106          30 NEKWEFPRDNLQFGKTLGAGAFGKVVEATAFGLGKEDNVLRVAVKMLKASAHTDEREALMSELKILSHLGQHKNIVNLLG  109 (374)
T ss_pred             cccccccHHHceehheecCCCcccEEEEEEecCCcccccceeEEEeccCCCCHHHHHHHHHHHHHHHhhccCCceeeEee
Confidence            3456677788999999999999999998742      23579999886543 44456789999999999 8999999999


Q ss_pred             EEEECCEEEEEEecCCCCCCCH----------------------------------------------------------
Q 047066          168 CCLETEVPLLVNEFVKLPTISW----------------------------------------------------------  189 (256)
Q Consensus       168 ~~~~~~~~~lv~e~~~~~~l~~----------------------------------------------------------  189 (256)
                      +|...+..+++|||+++|+|..                                                          
T Consensus       110 ~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (374)
T cd05106         110 ACTHGGPVLVITEYCCYGDLLNFLRKKAETFLNFVMALPEISETSSDYKNITLEKKYIRSDSGFSSQGSDTYVEMRPVSS  189 (374)
T ss_pred             EecCCCCeEEeHhhccCCcHHHHHHhhhhhhccccccccccccccccccccchhcccccccccccccccccccccCCccc
Confidence            9999999999999998876532                                                          


Q ss_pred             ----------------------HHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCcee
Q 047066          190 ----------------------EVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQL  234 (256)
Q Consensus       190 ----------------------~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~  234 (256)
                                            .....++.|++             |||||+|||+++++.+||+|||+++.+..+....
T Consensus       190 ~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~yLH~~giiHrDLkp~Nil~~~~~~~kL~DfGla~~~~~~~~~~  269 (374)
T cd05106         190 SSSQSSDSKDEEDTEDSWPLDLDDLLRFSSQVAQGMDFLASKNCIHRDVAARNVLLTDGRVAKICDFGLARDIMNDSNYV  269 (374)
T ss_pred             cccccccccchhccCCCCCcCHHHHHHHHHHHHHHHHHHHHCCEEeccCchheEEEeCCCeEEEeeceeeeeccCCccee
Confidence                                  22334445543             7999999999999999999999998764432221


Q ss_pred             e-eeeeecccc----cccccCCCCCCC
Q 047066          235 S-TMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       235 ~-~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      . ....+++.|    .+..+.++.++|
T Consensus       270 ~~~~~~~~~~y~aPE~~~~~~~~~~~D  296 (374)
T cd05106         270 VKGNARLPVKWMAPESIFDCVYTVQSD  296 (374)
T ss_pred             eccCCCCccceeCHHHhcCCCCCcccc
Confidence            1 122345567    455677888887

Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is criti

>KOG4721 consensus Serine/threonine protein kinase, contains leucine zipper domain [Signal transduction mechanisms]

Probab=99.86  E-value=2.3e-22  Score=174.35  Aligned_cols=151  Identities=23%  Similarity=0.370  Sum_probs=125.2

Q ss_pred             hHHHHhhcCCCcccceeeeeCceEEEEEEECCCcEEEEEEecccChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEE
Q 047066           96 AGELKIATNNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVP  175 (256)
Q Consensus        96 ~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~  175 (256)
                      .+.|+++.+....++.||.|+-|-||.|++ .+++||||+++...+       .+++.|++|+||||+.+.|+|....-+
T Consensus       116 ~e~WeiPFe~IsELeWlGSGaQGAVF~Grl-~netVAVKKV~elkE-------TdIKHLRkLkH~NII~FkGVCtqsPcy  187 (904)
T KOG4721|consen  116 EELWEIPFEEISELEWLGSGAQGAVFLGRL-HNETVAVKKVRELKE-------TDIKHLRKLKHPNIITFKGVCTQSPCY  187 (904)
T ss_pred             hhhccCCHHHhhhhhhhccCcccceeeeec-cCceehhHHHhhhhh-------hhHHHHHhccCcceeeEeeeecCCcee
Confidence            356888888888889999999999999999 678999998764433       357789999999999999999999999


Q ss_pred             EEEEecCCCCCCC-----------------------HHHHHHHHHHHHhccCCCcEEEcCCCcEEEEecCCceecCCCCc
Q 047066          176 LLVNEFVKLPTIS-----------------------WEVRIRIAAETAEDIKSINILLDDNYTTKVCDFGASKLVPIDET  232 (256)
Q Consensus       176 ~lv~e~~~~~~l~-----------------------~~~~~~~~~~i~rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~  232 (256)
                      +|+||||..|.|.                       -+..++.-..||||||.-||||..+..+||+|||-++.+... .
T Consensus       188 CIiMEfCa~GqL~~VLka~~~itp~llv~Wsk~IA~GM~YLH~hKIIHRDLKSPNiLIs~~d~VKIsDFGTS~e~~~~-S  266 (904)
T KOG4721|consen  188 CIIMEFCAQGQLYEVLKAGRPITPSLLVDWSKGIAGGMNYLHLHKIIHRDLKSPNILISYDDVVKISDFGTSKELSDK-S  266 (904)
T ss_pred             EEeeeccccccHHHHHhccCccCHHHHHHHHHHhhhhhHHHHHhhHhhhccCCCceEeeccceEEeccccchHhhhhh-h
Confidence            9999999987762                       133456666788999999999999999999999999988654 2


Q ss_pred             eeeeeeeecccc----cccccCCCCCCC
Q 047066          233 QLSTMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       233 ~~~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      +.+ ..+||..|    .+.....++|.|
T Consensus       267 TkM-SFaGTVaWMAPEvIrnePcsEKVD  293 (904)
T KOG4721|consen  267 TKM-SFAGTVAWMAPEVIRNEPCSEKVD  293 (904)
T ss_pred             hhh-hhhhhHhhhCHHHhhcCCcccccc
Confidence            222 35799999    677777788877

>cd05584 STKc_p70S6K Catalytic domain of the Protein Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase

Probab=99.86  E-value=8.3e-21  Score=162.01  Aligned_cols=146  Identities=25%  Similarity=0.315  Sum_probs=111.9

Q ss_pred             ceeeeeCceEEEEEEE----CCCcEEEEEEecccC----hhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEec
Q 047066          110 RMIGRGGYGTVFLGSL----SDNKAIAIKKSRIVY----QSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEF  181 (256)
Q Consensus       110 ~~lg~G~~g~V~~~~~----~~~~~vavK~~~~~~----~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~  181 (256)
                      +.||+|+||.||++..    .+++.+|+|.+....    ......+.+|+.+++.++||||+++++++...+..+++|||
T Consensus         2 ~~lg~G~~g~V~~~~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~il~~l~hp~iv~~~~~~~~~~~~~lv~e~   81 (323)
T cd05584           2 KVLGKGGYGKVFQVRKVTGADTGKIFAMKVLKKATIVRNQKDTAHTKAERNILEAVKHPFIVDLIYAFQTGGKLYLILEY   81 (323)
T ss_pred             ceeeecCCeEEEEEEEcccCCCCCEEEEEEEEHHHHHhhhhhHHHHHHHHHHHHhCCCCchhceeeEEecCCeEEEEEeC
Confidence            5799999999999985    257889999876421    23335678899999999999999999999999999999999


Q ss_pred             CCCCCCC----------HHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceeeeee
Q 047066          182 VKLPTIS----------WEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMV  238 (256)
Q Consensus       182 ~~~~~l~----------~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~~~  238 (256)
                      +.+++|.          ......++.|++             |||||+|||++.++.+||+|||+++....... .....
T Consensus        82 ~~~~~L~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~-~~~~~  160 (323)
T cd05584          82 LSGGELFMHLEREGIFMEDTACFYLSEISLALEHLHQQGIIYRDLKPENILLDAQGHVKLTDFGLCKESIHEGT-VTHTF  160 (323)
T ss_pred             CCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeEECCCCCEEEeeCcCCeecccCCC-ccccc
Confidence            9987652          233333343433             79999999999999999999999986433222 12335


Q ss_pred             eecccc----cccccCCCCCCC
Q 047066          239 QGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       239 ~Gt~~y----~~~~~~~t~ksD  256 (256)
                      .||+.|    .+.+..++.++|
T Consensus       161 ~gt~~y~aPE~~~~~~~~~~~D  182 (323)
T cd05584         161 CGTIEYMAPEILMRSGHGKAVD  182 (323)
T ss_pred             CCCccccChhhccCCCCCCcce
Confidence            689999    455566777776

Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the in

>KOG0198 consensus MEKK and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.86  E-value=5.3e-21  Score=159.73  Aligned_cols=141  Identities=28%  Similarity=0.423  Sum_probs=111.0

Q ss_pred             CCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccChhHHHHHHHHHHHHHhCCCCcccceeeEEEECC--EEEEEEe
Q 047066          104 NNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLETE--VPLLVNE  180 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~--~~~lv~e  180 (256)
                      .++...+.||+|+||.||++... +|...|||.+...+....+.+.+|+.+|.+++|||||+++|......  .+++.||
T Consensus        17 ~~~~~~~~lG~Gs~G~V~l~~~~~~g~~~AvK~v~~~~~~~~~~l~~Ei~iL~~l~~p~IV~~~G~~~~~~~~~~~i~mE   96 (313)
T KOG0198|consen   17 SNWSKGKLLGRGSFGSVYLATNKKTGELMAVKSVELEDSPTSESLEREIRILSRLNHPNIVQYYGSSSSRENDEYNIFME   96 (313)
T ss_pred             chhhhhccccCccceEEEEEEecCCCcceeeeeeecccchhHHHHHHHHHHHHhCCCCCEEeeCCccccccCeeeEeeee
Confidence            45677789999999999999975 48999999886554333677899999999999999999999855444  6999999


Q ss_pred             cCCCCCC-----------CHHHHHHHHHHH-------------HhccCCCcEEEcC-CCcEEEEecCCceecCC--CCce
Q 047066          181 FVKLPTI-----------SWEVRIRIAAET-------------AEDIKSINILLDD-NYTTKVCDFGASKLVPI--DETQ  233 (256)
Q Consensus       181 ~~~~~~l-----------~~~~~~~~~~~i-------------~rdlk~~NiLi~~-~~~~ki~DFGla~~~~~--~~~~  233 (256)
                      |+.+|+|           ++........++             |+||||+|||++. ++.+||+|||+++....  ....
T Consensus        97 y~~~GsL~~~~~~~g~~l~E~~v~~ytr~iL~GL~ylHs~g~vH~DiK~~NiLl~~~~~~~KlaDFG~a~~~~~~~~~~~  176 (313)
T KOG0198|consen   97 YAPGGSLSDLIKRYGGKLPEPLVRRYTRQILEGLAYLHSKGIVHCDIKPANILLDPSNGDVKLADFGLAKKLESKGTKSD  176 (313)
T ss_pred             ccCCCcHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHhCCEeccCcccceEEEeCCCCeEEeccCcccccccccccccc
Confidence            9988554           455555555443             3799999999999 79999999999998763  1222


Q ss_pred             eeeeeeecccc
Q 047066          234 LSTMVQGTLGY  244 (256)
Q Consensus       234 ~~~~~~Gt~~y  244 (256)
                      ......||+.|
T Consensus       177 ~~~~~~Gtp~~  187 (313)
T KOG0198|consen  177 SELSVQGTPNY  187 (313)
T ss_pred             ccccccCCccc
Confidence            23346799999

>cd05592 STKc_nPKC_theta_delta Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta

Probab=99.86  E-value=9.2e-21  Score=161.29  Aligned_cols=146  Identities=25%  Similarity=0.296  Sum_probs=112.5

Q ss_pred             ceeeeeCceEEEEEEEC-CCcEEEEEEeccc---ChhHHHHHHHHHHHHHhC-CCCcccceeeEEEECCEEEEEEecCCC
Q 047066          110 RMIGRGGYGTVFLGSLS-DNKAIAIKKSRIV---YQSQIEQCINKVVVLSQI-NHRNVVGLLGCCLETEVPLLVNEFVKL  184 (256)
Q Consensus       110 ~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~lv~e~~~~  184 (256)
                      +.||+|+||.||+|... +++.||+|.++..   .....+....|..++..+ +||||+++++++...+..++||||+++
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~hp~i~~~~~~~~~~~~~~lv~e~~~g   80 (316)
T cd05592           1 KVLGKGSFGKVMLAELKGTNEFFAIKALKKDVVLEDDDVECTMVERRVLALAWEHPFLTHLFCTFQTKEHLFFVMEYLNG   80 (316)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhccCCCCccceeeEEEcCCEEEEEEcCCCC
Confidence            36999999999999975 5788999988643   223345566777777655 899999999999999999999999998


Q ss_pred             CCCC----------HHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceeeeeeeec
Q 047066          185 PTIS----------WEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGT  241 (256)
Q Consensus       185 ~~l~----------~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~~~~Gt  241 (256)
                      ++|.          ......++.|++             |||||+|||++.++.+||+|||+++...... ......+||
T Consensus        81 g~L~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~~~ivH~dlkp~Nill~~~~~~kL~Dfg~a~~~~~~~-~~~~~~~gt  159 (316)
T cd05592          81 GDLMFHIQSSGRFDEARARFYAAEIICGLQFLHKKGIIYRDLKLDNVLLDKDGHIKIADFGMCKENMNGE-GKASTFCGT  159 (316)
T ss_pred             CcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCEEeCCCCHHHeEECCCCCEEEccCcCCeECCCCC-CccccccCC
Confidence            7763          333344444444             6999999999999999999999998654332 223445699


Q ss_pred             ccc----cccccCCCCCCC
Q 047066          242 LGY----YLHTSQGTLNKE  256 (256)
Q Consensus       242 ~~y----~~~~~~~t~ksD  256 (256)
                      +.|    .+.+..++.++|
T Consensus       160 ~~y~aPE~~~~~~~~~~~D  178 (316)
T cd05592         160 PDYIAPEILKGQKYNESVD  178 (316)
T ss_pred             ccccCHHHHcCCCCCCccc
Confidence            999    556677888887

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an imp

>cd05591 STKc_nPKC_epsilon Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C epsilon

Probab=99.86  E-value=9e-21  Score=161.63  Aligned_cols=146  Identities=25%  Similarity=0.336  Sum_probs=113.9

Q ss_pred             ceeeeeCceEEEEEEEC-CCcEEEEEEeccc---ChhHHHHHHHHHHHHHhC-CCCcccceeeEEEECCEEEEEEecCCC
Q 047066          110 RMIGRGGYGTVFLGSLS-DNKAIAIKKSRIV---YQSQIEQCINKVVVLSQI-NHRNVVGLLGCCLETEVPLLVNEFVKL  184 (256)
Q Consensus       110 ~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~lv~e~~~~  184 (256)
                      +.||+|+||.||+|..+ +++.+|+|.+...   .....+.+..|.+++..+ +||||+++++++...+..++||||+++
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~~hp~i~~~~~~~~~~~~~~lv~E~~~~   80 (321)
T cd05591           1 KVLGKGSFGKVMLAELKGTDEVYAIKVLKKDVILQDDDVDCTMTEKRILALAAKHPFLTALHCCFQTKDRLFFVMEYVNG   80 (321)
T ss_pred             CccccCCCeEEEEEEECCCCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHhccCCCCccceeeEEEcCCeEEEEEeCCCC
Confidence            36899999999999975 5789999987643   233446678899998876 899999999999999999999999998


Q ss_pred             CCC----------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceeeeeeeec
Q 047066          185 PTI----------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGT  241 (256)
Q Consensus       185 ~~l----------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~~~~Gt  241 (256)
                      ++|          ++.....++.+++             |||||+|||++.++.+||+|||+++........ .....||
T Consensus        81 ~~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDikp~Nill~~~~~~kL~Dfg~~~~~~~~~~~-~~~~~gt  159 (321)
T cd05591          81 GDLMFQIQRSRKFDEPRSRFYAAEVTLALMFLHRHGVIYRDLKLDNILLDAEGHCKLADFGMCKEGILNGVT-TTTFCGT  159 (321)
T ss_pred             CcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHeEECCCCCEEEeecccceecccCCcc-ccccccC
Confidence            765          3333444444443             799999999999999999999999864332222 2345699


Q ss_pred             ccc----cccccCCCCCCC
Q 047066          242 LGY----YLHTSQGTLNKE  256 (256)
Q Consensus       242 ~~y----~~~~~~~t~ksD  256 (256)
                      +.|    .+.+..++.++|
T Consensus       160 ~~y~aPE~~~~~~~~~~~D  178 (321)
T cd05591         160 PDYIAPEILQELEYGPSVD  178 (321)
T ss_pred             ccccCHHHHcCCCCCCccc
Confidence            999    555667888887

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to

>KOG0588 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.86  E-value=1.2e-21  Score=172.31  Aligned_cols=151  Identities=23%  Similarity=0.258  Sum_probs=119.8

Q ss_pred             CCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC---hhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEE
Q 047066          104 NNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY---QSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVN  179 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~  179 (256)
                      ..+++++.||+|+-|.|-+|++. +|+.+|||.+....   ......+.+|+-+|+-+.|||++++++.|.+...+|+|.
T Consensus        12 GpwkLgkTLG~Gstg~vrlakh~~TGqlaaiKii~k~~~~s~s~~~~IerEIviMkLi~HpnVl~LydVwe~~~~lylvl   91 (786)
T KOG0588|consen   12 GPWKLGKTLGKGSTGCVRLAKHAETGQLAAIKIIPKRSELSSSQPAGIEREIVIMKLIEHPNVLRLYDVWENKQHLYLVL   91 (786)
T ss_pred             cceeccccccCCCCceehhhhcccccceeEEEeeccccccccccccchhhhhHHHHHhcCCCeeeeeeeeccCceEEEEE
Confidence            45788899999999999999964 89999999886542   333456788999999999999999999999999999999


Q ss_pred             ecCCCCCC----------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceeee
Q 047066          180 EFVKLPTI----------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLST  236 (256)
Q Consensus       180 e~~~~~~l----------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~  236 (256)
                      ||+++|.|          ++....+...||.             |||||+|+|+|..+++||+|||+|..-.++  ....
T Consensus        92 Eyv~gGELFdylv~kG~l~e~eaa~ff~QIi~gv~yCH~~~icHRDLKpENlLLd~~~nIKIADFGMAsLe~~g--klLe  169 (786)
T KOG0588|consen   92 EYVPGGELFDYLVRKGPLPEREAAHFFRQILDGVSYCHAFNICHRDLKPENLLLDVKNNIKIADFGMASLEVPG--KLLE  169 (786)
T ss_pred             EecCCchhHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhhhcceeccCCchhhhhhcccCEeeeccceeecccCC--cccc
Confidence            99988654          5555555555544             799999999999999999999999874332  2234


Q ss_pred             eeeecccc----cccccCC-CCCCC
Q 047066          237 MVQGTLGY----YLHTSQG-TLNKE  256 (256)
Q Consensus       237 ~~~Gt~~y----~~~~~~~-t~ksD  256 (256)
                      +-||+|.|    .+.+..| ..+||
T Consensus       170 TSCGSPHYA~PEIV~G~pYdG~~sD  194 (786)
T KOG0588|consen  170 TSCGSPHYAAPEIVSGRPYDGRPSD  194 (786)
T ss_pred             ccCCCcccCCchhhcCCCCCCCccc
Confidence            56899999    4555555 33444

>cd05064 PTKc_EphR_A10 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A10

Probab=99.86  E-value=4e-21  Score=159.42  Aligned_cols=155  Identities=15%  Similarity=0.252  Sum_probs=117.7

Q ss_pred             hcCCCcccceeeeeCceEEEEEEEC----CCcEEEEEEecccC-hhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEE
Q 047066          102 ATNNYAYDRMIGRGGYGTVFLGSLS----DNKAIAIKKSRIVY-QSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPL  176 (256)
Q Consensus       102 ~~~~~~~~~~lg~G~~g~V~~~~~~----~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~  176 (256)
                      ...+|++.+.||+|+||.||+|.++    .+..+|+|.++... ......+.+|+..+..++||||+++++++..++..+
T Consensus         3 ~~~~~~~~~~ig~G~fg~V~~~~~~~~~~~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~   82 (266)
T cd05064           3 DNKSIKIERILGTGRFGELCRGCLKLPSKRELPVAIHTLRAGCSDKQRRGFLAEALTLGQFDHSNIVRLEGVITRGNTMM   82 (266)
T ss_pred             chHHeEEeeeecccCCCeEEEEEEecCCCceeeEEEEecCCCCCHHHHHHHHHHHHHHhcCCCCCcCeEEEEEecCCCcE
Confidence            3457889999999999999999753    35689999887543 344467899999999999999999999999999999


Q ss_pred             EEEecCCCCCC-----------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCc
Q 047066          177 LVNEFVKLPTI-----------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDET  232 (256)
Q Consensus       177 lv~e~~~~~~l-----------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~  232 (256)
                      +||||+++++|           ++...+.++.+++             +||||+|||++.++.+|++|||.+........
T Consensus        83 lv~e~~~~~~L~~~l~~~~~~l~~~~~~~~~~~i~~al~~lH~~~iiH~dikp~nili~~~~~~~l~dfg~~~~~~~~~~  162 (266)
T cd05064          83 IVTEYMSNGALDSFLRKHEGQLVAGQLMGMLPGLASGMKYLSEMGYVHKGLAAHKVLVNSDLVCKISGFRRLQEDKSEAI  162 (266)
T ss_pred             EEEEeCCCCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHCCEeeccccHhhEEEcCCCcEEECCCcccccccccch
Confidence            99999988654           4455555555554             69999999999999999999998765432211


Q ss_pred             eeeeeeeecccc----cccccCCCCCCC
Q 047066          233 QLSTMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       233 ~~~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      .......+++.|    .+.++.++.++|
T Consensus       163 ~~~~~~~~~~~y~aPE~~~~~~~~~~~D  190 (266)
T cd05064         163 YTTMSGKSPVLWAAPEAIQYHHFSSASD  190 (266)
T ss_pred             hcccCCCCceeecCHHHHhhCCccchhH
Confidence            111112244556    455667777776

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA10 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchor

>cd05588 STKc_aPKC Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C

Probab=99.85  E-value=1.7e-20  Score=160.59  Aligned_cols=146  Identities=27%  Similarity=0.328  Sum_probs=115.1

Q ss_pred             ceeeeeCceEEEEEEEC-CCcEEEEEEeccc---ChhHHHHHHHHHHHHHhC-CCCcccceeeEEEECCEEEEEEecCCC
Q 047066          110 RMIGRGGYGTVFLGSLS-DNKAIAIKKSRIV---YQSQIEQCINKVVVLSQI-NHRNVVGLLGCCLETEVPLLVNEFVKL  184 (256)
Q Consensus       110 ~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~lv~e~~~~  184 (256)
                      +.||+|+||.||++..+ +++.||+|.++..   .......+..|..++..+ +||||+++++++...+..+++|||+++
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~e~~il~~~~~hp~Iv~~~~~~~~~~~~~lv~e~~~~   80 (329)
T cd05588           1 RVIGRGSYAKVLLVELKKTRRIYAMKVIKKELVNDDEDIDWVQTEKHVFETASNHPFLVGLHSCFQTESRLFFVIEFVSG   80 (329)
T ss_pred             CeEeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCCCCceEEEEEcCCEEEEEEeCCCC
Confidence            46899999999999975 6889999988643   233446688899999998 799999999999999999999999998


Q ss_pred             CCC----------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceeeeeeeec
Q 047066          185 PTI----------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGT  241 (256)
Q Consensus       185 ~~l----------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~~~~Gt  241 (256)
                      ++|          ++.....++.|++             |||||+|||++.++.+||+|||+++....... .....+||
T Consensus        81 g~L~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~Nili~~~~~~kL~Dfg~~~~~~~~~~-~~~~~~gt  159 (329)
T cd05588          81 GDLMFHMQRQRKLPEEHARFYSAEISLALNFLHERGIIYRDLKLDNVLLDAEGHIKLTDYGMCKEGIRPGD-TTSTFCGT  159 (329)
T ss_pred             CCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeEecCCCHHHeEECCCCCEEECcCccccccccCCC-ccccccCC
Confidence            765          4444555555544             69999999999999999999999975322221 12345699


Q ss_pred             ccc----cccccCCCCCCC
Q 047066          242 LGY----YLHTSQGTLNKE  256 (256)
Q Consensus       242 ~~y----~~~~~~~t~ksD  256 (256)
                      +.|    .+.+..++.++|
T Consensus       160 ~~y~aPE~~~~~~~~~~~D  178 (329)
T cd05588         160 PNYIAPEILRGEDYGFSVD  178 (329)
T ss_pred             ccccCHHHHcCCCCCCccc
Confidence            999    566677888887

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. They contain a C2-like region, instead of a calcium-binding (C2) region found in classical PKCs, in their regulatory domain. There are two aPKC isoforms, zeta and iota. aPKCs are involved in many cellular functions incl

>cd05068 PTKc_Frk_like Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

Probab=99.85  E-value=7.1e-21  Score=157.27  Aligned_cols=156  Identities=19%  Similarity=0.342  Sum_probs=119.9

Q ss_pred             HhhcCCCcccceeeeeCceEEEEEEECCCcEEEEEEecccChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEE
Q 047066          100 KIATNNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVN  179 (256)
Q Consensus       100 ~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~  179 (256)
                      ++++++|++.+.||+|++|.||+|...++..+|+|.++.... ..+.+.+|+.++++++|||++++++++...+..+++|
T Consensus         2 ~~~~~~~~~~~~lg~g~~~~v~~~~~~~~~~v~iK~~~~~~~-~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~   80 (261)
T cd05068           2 EIDRTSIQLLRKLGAGQFGEVWEGLWNNTTPVAVKTLKPGTM-DPKDFLAEAQIMKKLRHPKLIQLYAVCTLEEPIYIVT   80 (261)
T ss_pred             ccchhheeeEEEecccCCccEEEEEecCCeEEEEEeeCCCcc-cHHHHHHHHHHHHHCCCCCccceeEEEecCCCeeeee
Confidence            456678999999999999999999987778899998865432 3467889999999999999999999999999999999


Q ss_pred             ecCCCCCC------------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCcee
Q 047066          180 EFVKLPTI------------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQL  234 (256)
Q Consensus       180 e~~~~~~l------------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~  234 (256)
                      ||+.+++|            ++.....++.+++             +||+|+||++++++.+||+|||+++.........
T Consensus        81 e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~~l~dfg~~~~~~~~~~~~  160 (261)
T cd05068          81 ELMKYGSLLEYLQGGAGRALKLPQLIDMAAQVASGMAYLEAQNYIHRDLAARNVLVGENNICKVADFGLARVIKEDIYEA  160 (261)
T ss_pred             ecccCCcHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCeeeccCCcceEEEcCCCCEEECCcceEEEccCCcccc
Confidence            99977554            3444455555544             6999999999999999999999998875332211


Q ss_pred             eeeeeecccc----cccccCCCCCCC
Q 047066          235 STMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       235 ~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      .....++..|    +..+..++.++|
T Consensus       161 ~~~~~~~~~y~aPE~~~~~~~~~~~D  186 (261)
T cd05068         161 REGAKFPIKWTAPEAALYNRFSIKSD  186 (261)
T ss_pred             cCCCcCceeccCccccccCCCCchhh
Confidence            1111123345    445566777776

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins a

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=99.85  E-value=1e-20  Score=176.84  Aligned_cols=153  Identities=21%  Similarity=0.316  Sum_probs=120.2

Q ss_pred             CCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC---hhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEE
Q 047066          104 NNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY---QSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVN  179 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~  179 (256)
                      ++|++.+.||+|+||.||+|... +++.||+|++....   ....+++.+|+.+++.++||||+++++++...+..+++|
T Consensus         2 grYeIi~~LGkGgfG~VYlA~d~~tg~~VAIK~I~~~l~~~e~~~~rflrEi~ILs~L~HPNIVkl~~v~~d~~~lyLVM   81 (932)
T PRK13184          2 QRYDIIRLIGKGGMGEVYLAYDPVCSRRVALKKIREDLSENPLLKKRFLREAKIAADLIHPGIVPVYSICSDGDPVYYTM   81 (932)
T ss_pred             CCeEEEEEEecCCCEEEEEEEECCCCcEEEEEEECcccccCHHHHHHHHHHHHHHHhCCCcCcCeEEEEEeeCCEEEEEE
Confidence            47889999999999999999975 58899999886432   233467899999999999999999999999999999999


Q ss_pred             ecCCCCCCCHHH---------------------HHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCce
Q 047066          180 EFVKLPTISWEV---------------------RIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASK  225 (256)
Q Consensus       180 e~~~~~~l~~~~---------------------~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~  225 (256)
                      ||+++++|....                     .+.++.+++             |||||+|||++.++.+||+|||+++
T Consensus        82 EY~eGGSL~~lL~s~~~~~~l~e~~~~~lsv~~iL~I~~QIa~AL~yLHs~GIIHRDLKPeNILLd~dg~vKLiDFGLAk  161 (932)
T PRK13184         82 PYIEGYTLKSLLKSVWQKESLSKELAEKTSVGAFLSIFHKICATIEYVHSKGVLHRDLKPDNILLGLFGEVVILDWGAAI  161 (932)
T ss_pred             EcCCCCCHHHHHHHhhhccccchhhhcccCHHHHHHHHHHHHHHHHHHHHCCccccCCchheEEEcCCCCEEEEecCcce
Confidence            999998874321                     233344433             7999999999999999999999998


Q ss_pred             ecCCCCc-----------------eeeeeeeecccc----cccccCCCCCCC
Q 047066          226 LVPIDET-----------------QLSTMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       226 ~~~~~~~-----------------~~~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      .......                 ......+||+.|    .+.+..++.++|
T Consensus       162 ~i~~~~~~~~~l~~~~~~s~~s~~t~~g~~vGT~~YmAPE~l~g~~~S~kSD  213 (932)
T PRK13184        162 FKKLEEEDLLDIDVDERNICYSSMTIPGKIVGTPDYMAPERLLGVPASESTD  213 (932)
T ss_pred             ecccccccccccccccccccccccccCCCCCCCCCCCCHHHhcCCCCCcHhH
Confidence            7621110                 011124699999    566777888877

>cd05615 STKc_cPKC_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C alpha

Probab=99.85  E-value=1.1e-20  Score=161.25  Aligned_cols=151  Identities=22%  Similarity=0.297  Sum_probs=117.6

Q ss_pred             CCcccceeeeeCceEEEEEEEC-CCcEEEEEEeccc---ChhHHHHHHHHHHHHHhCC-CCcccceeeEEEECCEEEEEE
Q 047066          105 NYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIV---YQSQIEQCINKVVVLSQIN-HRNVVGLLGCCLETEVPLLVN  179 (256)
Q Consensus       105 ~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~-h~niv~l~~~~~~~~~~~lv~  179 (256)
                      +|...+.||+|+||.||++..+ +++.||+|.+...   .....+.+..|..++..+. |++|+++.+++...+..++||
T Consensus         1 ~f~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~   80 (323)
T cd05615           1 DFNFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVVIQDDDVECTMVEKRVLALQDKPPFLTQLHSCFQTVDRLYFVM   80 (323)
T ss_pred             CceEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCchhheeeEEecCCEEEEEE
Confidence            3667789999999999999865 6889999988643   2234456788999998884 678888999999999999999


Q ss_pred             ecCCCCCC----------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceeee
Q 047066          180 EFVKLPTI----------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLST  236 (256)
Q Consensus       180 e~~~~~~l----------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~  236 (256)
                      ||+++++|          ++.....++.+++             |||||+|||+++++.+||+|||+++....+.. ...
T Consensus        81 Ey~~~g~L~~~i~~~~~l~~~~~~~i~~qi~~al~~lH~~~ivHrDikp~Nill~~~~~ikL~Dfg~~~~~~~~~~-~~~  159 (323)
T cd05615          81 EYVNGGDLMYHIQQVGKFKEPQAVFYAAEISVGLFFLHRRGIIYRDLKLDNVMLDSEGHIKIADFGMCKEHMVDGV-TTR  159 (323)
T ss_pred             cCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHeEECCCCCEEEeccccccccCCCCc-ccc
Confidence            99998764          4455555555554             69999999999999999999999986433222 123


Q ss_pred             eeeecccc----cccccCCCCCCC
Q 047066          237 MVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       237 ~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      ...||+.|    .+.++.++.++|
T Consensus       160 ~~~gt~~y~aPE~~~~~~~~~~~D  183 (323)
T cd05615         160 TFCGTPDYIAPEIIAYQPYGKSVD  183 (323)
T ss_pred             CccCCccccCHHHHcCCCCCCccc
Confidence            34699999    556677888887

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, a

>cd07853 STKc_NLK Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase

Probab=99.85  E-value=9e-21  Score=164.86  Aligned_cols=152  Identities=26%  Similarity=0.324  Sum_probs=117.1

Q ss_pred             CCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC--hhHHHHHHHHHHHHHhCCCCcccceeeEEEECC-----EEE
Q 047066          105 NYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY--QSQIEQCINKVVVLSQINHRNVVGLLGCCLETE-----VPL  176 (256)
Q Consensus       105 ~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~-----~~~  176 (256)
                      +|++.+.||+|+||.||++... +++.||+|.+....  .....++.+|+.+++.++||||+++++++...+     ..+
T Consensus         1 ~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~   80 (372)
T cd07853           1 DVEPDRPIGYGAFGVVWSVTDPRDGKRVALKKMPNVFQNLVSCKRVFRELKMLCFFKHDNVLSALDILQPPHIDPFEEIY   80 (372)
T ss_pred             CCcccceeeeCCCEEEEEEEECCCCCEEEEEeccccccchHHHHHHHHHHHHHHhCCCCCcCCHhheecCCCccccceEE
Confidence            4678899999999999999964 78999999876432  234467889999999999999999999998766     789


Q ss_pred             EEEecCCC---------CCCCHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCcee
Q 047066          177 LVNEFVKL---------PTISWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQL  234 (256)
Q Consensus       177 lv~e~~~~---------~~l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~  234 (256)
                      +++||+.+         +.+++.....++.|++             +||||+|||++.++.+||+|||+++.........
T Consensus        81 lv~e~~~~~l~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~~ivH~dlkp~Nili~~~~~~kL~Dfg~a~~~~~~~~~~  160 (372)
T cd07853          81 VVTELMQSDLHKIIVSPQPLSSDHVKVFLYQILRGLKYLHSAGILHRDIKPGNLLVNSNCVLKICDFGLARVEEPDESKH  160 (372)
T ss_pred             EEeeccccCHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCChHHEEECCCCCEEeccccceeecccCcccc
Confidence            99999865         3355555555555544             6999999999999999999999998765443333


Q ss_pred             eeeeeecccc----cccc-cCCCCCCC
Q 047066          235 STMVQGTLGY----YLHT-SQGTLNKE  256 (256)
Q Consensus       235 ~~~~~Gt~~y----~~~~-~~~t~ksD  256 (256)
                      .+...||+.|    .+.+ ..++.++|
T Consensus       161 ~~~~~~~~~y~aPE~~~~~~~~~~~~D  187 (372)
T cd07853         161 MTQEVVTQYYRAPEILMGSRHYTSAVD  187 (372)
T ss_pred             CCCCCcCCCcCCHHHHcCCCCCCcHHH
Confidence            3334578888    2332 34677766

Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription

>KOG1025 consensus Epidermal growth factor receptor EGFR and related tyrosine kinases [Signal transduction mechanisms]

Probab=99.85  E-value=6.5e-22  Score=177.55  Aligned_cols=149  Identities=22%  Similarity=0.382  Sum_probs=117.0

Q ss_pred             cccceeeeeCceEEEEEEE-CCC----cEEEEEEecccC-hhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEe
Q 047066          107 AYDRMIGRGGYGTVFLGSL-SDN----KAIAIKKSRIVY-QSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNE  180 (256)
Q Consensus       107 ~~~~~lg~G~~g~V~~~~~-~~~----~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e  180 (256)
                      ...++||+|+||+||+|.+ ..+    -+||+|.+.... .....+++.|+-.|.+++|||+++++|+|..+. +.+|++
T Consensus       699 kk~kvLGsgAfGtV~kGiw~Pege~vKipVaiKvl~~~t~~~~s~e~LdeAl~masldHpnl~RLLgvc~~s~-~qlvtq  777 (1177)
T KOG1025|consen  699 KKDKVLGSGAFGTVYKGIWIPEGENVKIPVAIKVLIEFTSPKASIELLDEALRMASLDHPNLLRLLGVCMLST-LQLVTQ  777 (1177)
T ss_pred             hhhceeccccceeEEeeeEecCCceecceeEEEEeeccCCchhhHHHHHHHHHHhcCCCchHHHHhhhcccch-HHHHHH
Confidence            3447999999999999985 333    478888765433 445578999999999999999999999999866 889999


Q ss_pred             cCCCCCCC-----------HHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceeee
Q 047066          181 FVKLPTIS-----------WEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLST  236 (256)
Q Consensus       181 ~~~~~~l~-----------~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~  236 (256)
                      |++.|.|.           ....+.+..|||             |||.++|||+.....+||.|||+|+.+..++.....
T Consensus       778 ~mP~G~LlDyvr~hr~~igsq~lLnw~~QIAkgM~YLe~qrlVHrdLaaRNVLVksP~hvkitdfgla~ll~~d~~ey~~  857 (1177)
T KOG1025|consen  778 LMPLGCLLDYVREHRDNIGSQDLLNWCYQIAKGMKYLEEQRLVHRDLAARNVLVKSPNHVKITDFGLAKLLAPDEKEYSA  857 (1177)
T ss_pred             hcccchHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcchhhhhhhhhheeecCCCeEEEEecchhhccCcccccccc
Confidence            99997763           344456666666             799999999999999999999999998776555443


Q ss_pred             ee-eecccc----cccccCCCCCCC
Q 047066          237 MV-QGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       237 ~~-~Gt~~y----~~~~~~~t~ksD  256 (256)
                      .. .-.+.|    .+....||.+||
T Consensus       858 ~~gK~pikwmale~i~~~~~thqSD  882 (1177)
T KOG1025|consen  858 PGGKVPIKWMALESIRIRKYTHQSD  882 (1177)
T ss_pred             cccccCcHHHHHHHhhccCCCchhh
Confidence            22 223344    667788888887

>cd05582 STKc_RSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase

Probab=99.85  E-value=1.3e-20  Score=160.39  Aligned_cols=146  Identities=25%  Similarity=0.292  Sum_probs=114.2

Q ss_pred             ceeeeeCceEEEEEEE----CCCcEEEEEEecccC--hhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEecCC
Q 047066          110 RMIGRGGYGTVFLGSL----SDNKAIAIKKSRIVY--QSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEFVK  183 (256)
Q Consensus       110 ~~lg~G~~g~V~~~~~----~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~  183 (256)
                      +.||+|+||.||+++.    .+++.+|+|.+....  ......+..|+.++++++||||+++++++...+..++||||++
T Consensus         2 ~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~   81 (318)
T cd05582           2 KVLGQGSFGKVFLVRKITGPDAGQLYAMKVLKKATLKVRDRVRTKMERDILAEVNHPFIVKLHYAFQTEGKLYLILDFLR   81 (318)
T ss_pred             ceeeeCCCEEEEEEEEeccCCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHhCCCCCcccEEEEEEcCCEEEEEEcCCC
Confidence            5799999999999874    257899999886432  2233567789999999999999999999999999999999998


Q ss_pred             CCCC----------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceeeeeeee
Q 047066          184 LPTI----------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQG  240 (256)
Q Consensus       184 ~~~l----------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~~~~G  240 (256)
                      +++|          ++.....++.|++             +||||+|||+++++.+||+|||+++........ .....|
T Consensus        82 ~~~L~~~l~~~~~l~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~kL~Dfg~~~~~~~~~~~-~~~~~g  160 (318)
T cd05582          82 GGDLFTRLSKEVMFTEEDVKFYLAELALALDHLHSLGIIYRDLKPENILLDEEGHIKLTDFGLSKESIDHEKK-AYSFCG  160 (318)
T ss_pred             CCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCEecCCCCHHHeEECCCCcEEEeeccCCcccCCCCCc-eecccC
Confidence            8664          4444455555554             699999999999999999999999875433222 234568


Q ss_pred             cccc----cccccCCCCCCC
Q 047066          241 TLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       241 t~~y----~~~~~~~t~ksD  256 (256)
                      |+.|    .+.+..++.++|
T Consensus       161 ~~~y~aPE~~~~~~~~~~~D  180 (318)
T cd05582         161 TVEYMAPEVVNRRGHTQSAD  180 (318)
T ss_pred             ChhhcCHHHHcCCCCCCccc
Confidence            9988    455566777777

Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylate

>PHA02988 hypothetical protein; Provisional

Probab=99.85  E-value=9e-21  Score=158.91  Aligned_cols=142  Identities=18%  Similarity=0.346  Sum_probs=110.7

Q ss_pred             ceeeeeCceEEEEEEECCCcEEEEEEecccCh---hHHHHHHHHHHHHHhCCCCcccceeeEEEE----CCEEEEEEecC
Q 047066          110 RMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQ---SQIEQCINKVVVLSQINHRNVVGLLGCCLE----TEVPLLVNEFV  182 (256)
Q Consensus       110 ~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~---~~~~~~~~E~~~l~~l~h~niv~l~~~~~~----~~~~~lv~e~~  182 (256)
                      ..+|+|++|.||+|.. +++.||+|.+.....   ...+.+.+|+.+|++++||||++++|++.+    ....+++|||+
T Consensus        26 ~~i~~g~~~~v~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~~~g~~~~~~~~~~~~~lv~Ey~  104 (283)
T PHA02988         26 VLIKENDQNSIYKGIF-NNKEVIIRTFKKFHKGHKVLIDITENEIKNLRRIDSNNILKIYGFIIDIVDDLPRLSLILEYC  104 (283)
T ss_pred             eEEeeCCceEEEEEEE-CCEEEEEEeccccccccHHHHHHHHHHHHHHHhcCCCCEEEEeeeEEecccCCCceEEEEEeC
Confidence            4799999999999998 788999998865432   224678899999999999999999999877    45789999999


Q ss_pred             CCCCC----------CHHHHHHHHHHHH--------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceeeeee
Q 047066          183 KLPTI----------SWEVRIRIAAETA--------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMV  238 (256)
Q Consensus       183 ~~~~l----------~~~~~~~~~~~i~--------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~~~  238 (256)
                      ++|+|          ++.....++.+++              |||||+|||+++++.+||+|||+++.+.....    ..
T Consensus       105 ~~g~L~~~l~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~Hrdlkp~nill~~~~~~kl~dfg~~~~~~~~~~----~~  180 (283)
T PHA02988        105 TRGYLREVLDKEKDLSFKTKLDMAIDCCKGLYNLYKYTNKPYKNLTSVSFLVTENYKLKIICHGLEKILSSPPF----KN  180 (283)
T ss_pred             CCCcHHHHHhhCCCCChhHHHHHHHHHHHHHHHHHhcCCCCCCcCChhhEEECCCCcEEEcccchHhhhccccc----cc
Confidence            99775          3444444444433              69999999999999999999999987643321    23


Q ss_pred             eecccc----cccc--cCCCCCCC
Q 047066          239 QGTLGY----YLHT--SQGTLNKE  256 (256)
Q Consensus       239 ~Gt~~y----~~~~--~~~t~ksD  256 (256)
                      .||+.|    .+.+  +.+|.++|
T Consensus       181 ~~~~~y~aPE~~~~~~~~~~~k~D  204 (283)
T PHA02988        181 VNFMVYFSYKMLNDIFSEYTIKDD  204 (283)
T ss_pred             cCcccccCHHHhhhccccccchhh
Confidence            477777    3322  57888887

>cd05114 PTKc_Tec_Rlk Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase

Probab=99.85  E-value=7.5e-21  Score=156.68  Aligned_cols=152  Identities=22%  Similarity=0.359  Sum_probs=115.7

Q ss_pred             CCCcccceeeeeCceEEEEEEECCCcEEEEEEecccChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEecCC
Q 047066          104 NNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEFVK  183 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~  183 (256)
                      ++|++.+.||+|+||.||++.++++..+|+|.+.... ...+++.+|+.+++.++||||+++++++...+..+++|||++
T Consensus         4 ~~~~~~~~lg~G~~~~vy~~~~~~~~~~a~K~~~~~~-~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~iv~e~~~   82 (256)
T cd05114           4 SELTFMKELGSGQFGVVHLGKWRAQIKVAIKAINEGA-MSEEDFIEEAKVMMKLSHPKLVQLYGVCTQQKPLYIVTEFME   82 (256)
T ss_pred             HHcEEeeEecCCcCceEEEEEeccCceEEEEecccCC-ccHHHHHHHHHHHHHCCCCCceeEEEEEccCCCEEEEEEcCC
Confidence            4578889999999999999998888889999876433 223678899999999999999999999999999999999998


Q ss_pred             CCCC-----------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceeeeeee
Q 047066          184 LPTI-----------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQ  239 (256)
Q Consensus       184 ~~~l-----------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~~~~  239 (256)
                      +++|           ++.....++.+++             +||+|+||+++.++.+||+|||+++..............
T Consensus        83 ~~~L~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~ni~i~~~~~~kl~d~g~~~~~~~~~~~~~~~~~  162 (256)
T cd05114          83 NGCLLNYLRQRQGKLSKDMLLSMCQDVCEGMEYLERNSFIHRDLAARNCLVSSTGVVKVSDFGMTRYVLDDEYTSSSGAK  162 (256)
T ss_pred             CCcHHHHHHhCccCCCHHHHHHHHHHHHHHHHHHHHCCccccccCcceEEEcCCCeEEECCCCCccccCCCceeccCCCC
Confidence            7654           4444455555444             699999999999999999999999876433222222222


Q ss_pred             ecccc----cccccCCCCCCC
Q 047066          240 GTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       240 Gt~~y----~~~~~~~t~ksD  256 (256)
                      ++..|    ...+..++.++|
T Consensus       163 ~~~~y~aPE~~~~~~~~~~~D  183 (256)
T cd05114         163 FPVKWSPPEVFNFSKYSSKSD  183 (256)
T ss_pred             CchhhCChhhcccCccchhhh
Confidence            44455    344455666665

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin h

>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]

Probab=99.85  E-value=3.9e-21  Score=165.57  Aligned_cols=133  Identities=25%  Similarity=0.377  Sum_probs=108.7

Q ss_pred             ceeeeeCceEEEEEEEC-CCcEEEEEEecccC--hhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEecCCC--
Q 047066          110 RMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY--QSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEFVKL--  184 (256)
Q Consensus       110 ~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~~--  184 (256)
                      ++||+|-||+||-|..+ +|+.||||.+....  ...-+++.+|+.||++++||.||.+.-.|++++..++|||-+.+  
T Consensus       570 evLGSGQFG~VYgg~hRktGrdVAvKvIdKlrFp~kqesqlR~EVaILq~l~HPGiV~le~M~ET~ervFVVMEKl~GDM  649 (888)
T KOG4236|consen  570 EVLGSGQFGTVYGGKHRKTGRDVAVKVIDKLRFPTKQESQLRNEVAILQNLHHPGIVNLECMFETPERVFVVMEKLHGDM  649 (888)
T ss_pred             hhccCCcceeeecceecccCceeeeeeeecccCCCchHHHHHHHHHHHHhcCCCCeeEEEEeecCCceEEEEehhhcchH
Confidence            79999999999999964 79999999886543  23337789999999999999999999999999999999998866  


Q ss_pred             ---------CCCCHHHHHHHHHHH-------------HhccCCCcEEEcCC---CcEEEEecCCceecCCCCceeeeeee
Q 047066          185 ---------PTISWEVRIRIAAET-------------AEDIKSINILLDDN---YTTKVCDFGASKLVPIDETQLSTMVQ  239 (256)
Q Consensus       185 ---------~~l~~~~~~~~~~~i-------------~rdlk~~NiLi~~~---~~~ki~DFGla~~~~~~~~~~~~~~~  239 (256)
                               |.|++.....+..||             |+||||+|||+...   -++||+|||+||++...  .....++
T Consensus       650 LEMILSsEkgRL~er~TkFlvtQIL~ALr~LH~knIvHCDLKPENVLLas~~~FPQvKlCDFGfARiIgEk--sFRrsVV  727 (888)
T KOG4236|consen  650 LEMILSSEKGRLPERITKFLVTQILVALRYLHFKNIVHCDLKPENVLLASASPFPQVKLCDFGFARIIGEK--SFRRSVV  727 (888)
T ss_pred             HHHHHHhhcccchHHHHHHHHHHHHHHHHHhhhcceeeccCCchheeeccCCCCCceeeccccceeecchh--hhhhhhc
Confidence                     556655544444443             36999999999543   48999999999998643  3445678


Q ss_pred             ecccc
Q 047066          240 GTLGY  244 (256)
Q Consensus       240 Gt~~y  244 (256)
                      |||.|
T Consensus       728 GTPAY  732 (888)
T KOG4236|consen  728 GTPAY  732 (888)
T ss_pred             CCccc
Confidence            99999

>KOG0658 consensus Glycogen synthase kinase-3 [Carbohydrate transport and metabolism]

Probab=99.85  E-value=6.2e-22  Score=163.63  Aligned_cols=146  Identities=24%  Similarity=0.347  Sum_probs=105.0

Q ss_pred             CCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccChhHHHHHHHHHHHHHhCCCCcccceeeEEEECC-----EEEEE
Q 047066          105 NYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLETE-----VPLLV  178 (256)
Q Consensus       105 ~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~-----~~~lv  178 (256)
                      +|...+++|+|+||.||+|... ++..||||+.-...+.    --+|+++|+.++|||||++.-+|....     ...+|
T Consensus        25 ~~~~~~liG~GsFg~Vyq~~~~e~~~~vAIKKv~~d~r~----knrEl~im~~l~HpNIV~L~~~f~~~~~~d~~~lnlV  100 (364)
T KOG0658|consen   25 SYEAVRLIGSGSFGVVYQAKLRETEEEVAIKKVLQDKRY----KNRELQIMRKLDHPNIVRLLYFFSSSTESDEVYLNLV  100 (364)
T ss_pred             EEEeeEEEeecccceEEEEEEcCCCceeEEEEecCCCCc----CcHHHHHHHhcCCcCeeeEEEEEEecCCCchhHHHHH
Confidence            5677789999999999999964 5789999987654432    136999999999999999998887522     34579


Q ss_pred             EecCCC-------------CCCCH-------------HHHHHHHHHHHhccCCCcEEEcCC-CcEEEEecCCceecCCCC
Q 047066          179 NEFVKL-------------PTISW-------------EVRIRIAAETAEDIKSINILLDDN-YTTKVCDFGASKLVPIDE  231 (256)
Q Consensus       179 ~e~~~~-------------~~l~~-------------~~~~~~~~~i~rdlk~~NiLi~~~-~~~ki~DFGla~~~~~~~  231 (256)
                      |||++.             ..++.             ...++-....||||||.|+|+|.+ |.+||||||.|+.+..++
T Consensus       101 leymP~tL~~~~r~~~~~~~~mp~~~iKLYt~Qlfrgl~yLh~~~IcHRDIKPqNlLvD~~tg~LKicDFGSAK~L~~~e  180 (364)
T KOG0658|consen  101 LEYMPETLYRVIRHYTRANQRMPLLEIKLYTYQLFRGLAYLHSHGICHRDIKPQNLLVDPDTGVLKICDFGSAKVLVKGE  180 (364)
T ss_pred             HHhchHHHHHHHHHHhhcCCCCceeeeHHHHHHHHHHHHHHHhcCcccCCCChheEEEcCCCCeEEeccCCcceeeccCC
Confidence            999965             11211             111222233458999999999976 899999999999987655


Q ss_pred             ceeeeeeeecccc-----cccccCCCCCCC
Q 047066          232 TQLSTMVQGTLGY-----YLHTSQGTLNKE  256 (256)
Q Consensus       232 ~~~~~~~~Gt~~y-----~~~~~~~t~ksD  256 (256)
                      ..  .+-..|..|     .+...+||.+.|
T Consensus       181 pn--iSYicSRyYRaPELifga~~Yt~~ID  208 (364)
T KOG0658|consen  181 PN--ISYICSRYYRAPELIFGATEYTTSID  208 (364)
T ss_pred             Cc--eeEEEeccccCHHHHcCccccCceeE
Confidence            44  223356666     445566666655

>cd05590 STKc_nPKC_eta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C eta

Probab=99.85  E-value=1.3e-20  Score=160.62  Aligned_cols=146  Identities=26%  Similarity=0.338  Sum_probs=113.6

Q ss_pred             ceeeeeCceEEEEEEEC-CCcEEEEEEeccc---ChhHHHHHHHHHHHHHhC-CCCcccceeeEEEECCEEEEEEecCCC
Q 047066          110 RMIGRGGYGTVFLGSLS-DNKAIAIKKSRIV---YQSQIEQCINKVVVLSQI-NHRNVVGLLGCCLETEVPLLVNEFVKL  184 (256)
Q Consensus       110 ~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~lv~e~~~~  184 (256)
                      +.||+|+||.||++..+ +++.||+|.+...   .....+.+..|..++..+ +||||+++++++...+..++||||+++
T Consensus         1 ~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~h~~iv~~~~~~~~~~~~~iv~Ey~~~   80 (320)
T cd05590           1 RVLGKGSFGKVMLARLKESGRLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLYCCFQTPDRLFFVMEFVNG   80 (320)
T ss_pred             CeeeeCCCeEEEEEEEcCCCCEEEEEEEEHHHHhhccHHHHHHHHHHHHHhccCCCchhceeeEEEcCCEEEEEEcCCCC
Confidence            36899999999999975 5889999987642   233456778899888877 799999999999999999999999998


Q ss_pred             CCC----------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceeeeeeeec
Q 047066          185 PTI----------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGT  241 (256)
Q Consensus       185 ~~l----------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~~~~Gt  241 (256)
                      ++|          +......++.|++             |||||+|||++.++.+||+|||+++........ .....||
T Consensus        81 g~L~~~i~~~~~l~~~~~~~~~~ql~~~L~~lH~~~ivH~dlkp~NIli~~~~~~kL~DfG~~~~~~~~~~~-~~~~~gt  159 (320)
T cd05590          81 GDLMFHIQKSRRFDEARARFYAAEITSALMFLHDKGIIYRDLKLDNVLLDHEGHCKLADFGMCKEGIFNGKT-TSTFCGT  159 (320)
T ss_pred             chHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeEeCCCCHHHeEECCCCcEEEeeCCCCeecCcCCCc-ccccccC
Confidence            765          3333444454444             699999999999999999999999864322222 2335699


Q ss_pred             ccc----cccccCCCCCCC
Q 047066          242 LGY----YLHTSQGTLNKE  256 (256)
Q Consensus       242 ~~y----~~~~~~~t~ksD  256 (256)
                      +.|    .+.+..++.++|
T Consensus       160 ~~y~aPE~~~~~~~~~~~D  178 (320)
T cd05590         160 PDYIAPEILQEMLYGPSVD  178 (320)
T ss_pred             ccccCHHHHcCCCCCCccc
Confidence            999    555667788877

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signal

>cd05604 STKc_SGK3 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 3

Probab=99.85  E-value=1.9e-20  Score=159.89  Aligned_cols=146  Identities=27%  Similarity=0.312  Sum_probs=111.6

Q ss_pred             ceeeeeCceEEEEEEEC-CCcEEEEEEeccc---ChhHHHHHHHHHH-HHHhCCCCcccceeeEEEECCEEEEEEecCCC
Q 047066          110 RMIGRGGYGTVFLGSLS-DNKAIAIKKSRIV---YQSQIEQCINKVV-VLSQINHRNVVGLLGCCLETEVPLLVNEFVKL  184 (256)
Q Consensus       110 ~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~---~~~~~~~~~~E~~-~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~~  184 (256)
                      +.||+|+||+||++... +++.+|+|.+...   .......+..|.. +++.++||||+++++.+...+..+++|||+.+
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~hp~iv~~~~~~~~~~~~~lv~e~~~~   80 (325)
T cd05604           1 KVIGKGSFGKVLLAKRKLDGKCYAVKVLQKKIVLNRKEQKHIMAERNVLLKNVKHPFLVGLHYSFQTTEKLYFVLDFVNG   80 (325)
T ss_pred             CceeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHHhCCCCCCccEEEEEecCCEEEEEEcCCCC
Confidence            46899999999999965 6889999987543   2233345566655 46778999999999999999999999999998


Q ss_pred             CCC----------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceeeeeeeec
Q 047066          185 PTI----------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGT  241 (256)
Q Consensus       185 ~~l----------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~~~~Gt  241 (256)
                      ++|          ++.....++.|++             |||||+|||++.++.+||+|||+++....... .....+||
T Consensus        81 ~~L~~~l~~~~~~~~~~~~~~~~qi~~al~~lH~~givH~Dlkp~NIll~~~~~~kL~DfG~~~~~~~~~~-~~~~~~gt  159 (325)
T cd05604          81 GELFFHLQRERSFPEPRARFYAAEIASALGYLHSINIVYRDLKPENILLDSQGHVVLTDFGLCKEGIAQSD-TTTTFCGT  159 (325)
T ss_pred             CCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeeecCCCHHHeEECCCCCEEEeecCCcccCCCCCC-CcccccCC
Confidence            765          3444445555544             69999999999999999999999986432222 22345699


Q ss_pred             ccc----cccccCCCCCCC
Q 047066          242 LGY----YLHTSQGTLNKE  256 (256)
Q Consensus       242 ~~y----~~~~~~~t~ksD  256 (256)
                      +.|    .+.++.++.++|
T Consensus       160 ~~y~aPE~~~~~~~~~~~D  178 (325)
T cd05604         160 PEYLAPEVIRKQPYDNTVD  178 (325)
T ss_pred             hhhCCHHHHcCCCCCCcCc
Confidence            999    566677888887

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels,

>cd05605 STKc_GRK4_like Catalytic domain of G protein-coupled Receptor Kinase 4-like Protein Serine/Threonine Kinases

Probab=99.85  E-value=1.7e-20  Score=157.21  Aligned_cols=150  Identities=27%  Similarity=0.352  Sum_probs=117.5

Q ss_pred             CCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC---hhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEe
Q 047066          105 NYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY---QSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNE  180 (256)
Q Consensus       105 ~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e  180 (256)
                      +|+..+.||+|+||.||++... +++.||+|.+....   ......+.+|+.+++.++||||+++++.+..++..+++||
T Consensus         1 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e   80 (285)
T cd05605           1 TFRHYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFVVSLAYAYETKDALCLVLT   80 (285)
T ss_pred             CceEEEEEecCCCeEEEEEEEcCCCceEEEEEEehhhhhhhhhHHHHHHHHHHHHhcCCCCEeeeeeeecCCCeEEEEEe
Confidence            3778899999999999999964 68899999886432   2223457889999999999999999999999999999999


Q ss_pred             cCCCCCCC------------HHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceee
Q 047066          181 FVKLPTIS------------WEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLS  235 (256)
Q Consensus       181 ~~~~~~l~------------~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~  235 (256)
                      |+++++|.            +.....++.|++             +||+|+||++++++.++|+|||++........  .
T Consensus        81 ~~~~~~L~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~Nil~~~~~~~~l~Dfg~~~~~~~~~~--~  158 (285)
T cd05605          81 LMNGGDLKFHIYNMGNPGFDEERAVFYAAEITCGLEDLHRERIVYRDLKPENILLDDYGHIRISDLGLAVEIPEGET--I  158 (285)
T ss_pred             ccCCCcHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHHHHCCcEecCCCHHHEEECCCCCEEEeeCCCceecCCCCc--c
Confidence            99887653            333344444444             69999999999999999999999987643322  1


Q ss_pred             eeeeecccc----cccccCCCCCCC
Q 047066          236 TMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       236 ~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      ....||+.|    .+.+..++.++|
T Consensus       159 ~~~~~~~~y~aPE~~~~~~~~~~~D  183 (285)
T cd05605         159 RGRVGTVGYMAPEVVKNERYTFSPD  183 (285)
T ss_pred             ccccCCCCccCcHHhcCCCCCcccc
Confidence            233588888    555667788777

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5,

>KOG0662 consensus Cyclin-dependent kinase CDK5 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=99.85  E-value=2e-21  Score=146.59  Aligned_cols=139  Identities=25%  Similarity=0.359  Sum_probs=110.5

Q ss_pred             CCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC--hhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEec
Q 047066          105 NYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY--QSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEF  181 (256)
Q Consensus       105 ~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~  181 (256)
                      .|.-.+.||+|.||+||+++.+ +++.||+|.++..+  +..-...++|+.+++.++|.|||++++.......+-+|+||
T Consensus         3 ~ydkmekigegtygtvfkarn~~t~eivalkrvrlddddegvpssalreicllkelkhknivrl~dvlhsdkkltlvfe~   82 (292)
T KOG0662|consen    3 KYDKMEKIGEGTYGTVFKARNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLVFEF   82 (292)
T ss_pred             chHHHHhhcCCcceeeEecccCCccceEEEEEEeccCCCCCCcHHHHHHHHHHHHhhhcceeehhhhhccCceeEEeHHH
Confidence            3555678999999999999965 57889999876543  33446789999999999999999999999999999999999


Q ss_pred             CCC----------CCCCHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceeeeee
Q 047066          182 VKL----------PTISWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMV  238 (256)
Q Consensus       182 ~~~----------~~l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~~~  238 (256)
                      |..          |.++.......+.|+.             |||||.|.||+.+|+.|++|||+|+.++.+-.-. ...
T Consensus        83 cdqdlkkyfdslng~~d~~~~rsfmlqllrgl~fchshnvlhrdlkpqnllin~ngelkladfglarafgipvrcy-sae  161 (292)
T KOG0662|consen   83 CDQDLKKYFDSLNGDLDPEIVRSFMLQLLRGLGFCHSHNVLHRDLKPQNLLINRNGELKLADFGLARAFGIPVRCY-SAE  161 (292)
T ss_pred             hhHHHHHHHHhcCCcCCHHHHHHHHHHHHhhhhhhhhhhhhhccCCcceEEeccCCcEEecccchhhhcCCceEee-ece
Confidence            953          6666655555554443             7999999999999999999999999876553222 223


Q ss_pred             eecccc
Q 047066          239 QGTLGY  244 (256)
Q Consensus       239 ~Gt~~y  244 (256)
                      +-|.+|
T Consensus       162 vvtlwy  167 (292)
T KOG0662|consen  162 VVTLWY  167 (292)
T ss_pred             eeeeec
Confidence            356777

>KOG0586 consensus Serine/threonine protein kinase [General function prediction only]

Probab=99.85  E-value=3.6e-21  Score=168.20  Aligned_cols=140  Identities=24%  Similarity=0.293  Sum_probs=114.7

Q ss_pred             cCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC--hhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEE
Q 047066          103 TNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY--QSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVN  179 (256)
Q Consensus       103 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~  179 (256)
                      ...|.+.+.||+|.|++|.++.+. ++..||+|.+....  ....+.+.+|+++|..++|||||+++++...+..+++||
T Consensus        55 vg~y~i~~tig~g~f~~V~La~~~~t~~~VaiK~idkt~ln~~~~~k~~rev~imk~l~HPnIvkl~~v~~t~~~lylV~  134 (596)
T KOG0586|consen   55 VGLYVIIKTIGKGNFAKVKLARHILTGTEVAIKIIDKTQLNPSKRQKLGREVDIMKSLNHPNIVKLFSVIETEATLYLVM  134 (596)
T ss_pred             ccceeeeeeeccceeEEEEeeEecCCCceEEEEEehhcccChHHHHHHHHHHHHHHhcCCcceeeeeeeeeecceeEEEE
Confidence            357889999999999999999965 68999999887643  344566899999999999999999999999999999999


Q ss_pred             ecCCCCCCC----------HHHHHHHH-------------HHHHhccCCCcEEEcCCCcEEEEecCCceecCCCCceeee
Q 047066          180 EFVKLPTIS----------WEVRIRIA-------------AETAEDIKSINILLDDNYTTKVCDFGASKLVPIDETQLST  236 (256)
Q Consensus       180 e~~~~~~l~----------~~~~~~~~-------------~~i~rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~  236 (256)
                      ||+.+|.+-          ........             ..+|||||++|+|++.+.++||+|||++..+..  .....
T Consensus       135 eya~~ge~~~yl~~~gr~~e~~ar~~F~q~vsaveYcH~k~ivHrdLk~eNilL~~~mnikIaDfgfS~~~~~--~~~lq  212 (596)
T KOG0586|consen  135 EYASGGELFDYLVKHGRMKEKEARAKFRQIVSAVEYCHSKNIVHRDLKAENILLDENMNIKIADFGFSTFFDY--GLMLQ  212 (596)
T ss_pred             EeccCchhHHHHHhcccchhhhhhhhhHHHHHHHHHHhhcceeccccchhhcccccccceeeeccccceeecc--ccccc
Confidence            999886652          22222222             235589999999999999999999999998753  33345


Q ss_pred             eeeecccc
Q 047066          237 MVQGTLGY  244 (256)
Q Consensus       237 ~~~Gt~~y  244 (256)
                      +.||++.|
T Consensus       213 t~cgsppy  220 (596)
T KOG0586|consen  213 TFCGSPPY  220 (596)
T ss_pred             ccCCCCCc
Confidence            67899999

>cd07859 STKc_TDY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants

Probab=99.85  E-value=1.2e-20  Score=161.63  Aligned_cols=152  Identities=24%  Similarity=0.322  Sum_probs=115.2

Q ss_pred             CCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC--hhHHHHHHHHHHHHHhCCCCcccceeeEEEEC-----CEEE
Q 047066          105 NYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY--QSQIEQCINKVVVLSQINHRNVVGLLGCCLET-----EVPL  176 (256)
Q Consensus       105 ~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~-----~~~~  176 (256)
                      +|++.+.||+|+||.||+|..+ ++..||+|.+....  .....++.+|+.+++.++||||+++++++...     ...+
T Consensus         1 ry~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~~   80 (338)
T cd07859           1 RYKIQEVIGKGSYGVVCSAIDTHTGEKVAIKKINDVFEHVSDATRILREIKLLRLLRHPDIVEIKHIMLPPSRREFKDIY   80 (338)
T ss_pred             CeEEEEEEeecCCeEEEEEEECCCCCEEEEEEechhhccchhHHHHHHHHHHHHhCCCCCEeeecceEeccCCCCCceEE
Confidence            4788899999999999999965 68999999886432  23345688999999999999999999988643     2489


Q ss_pred             EEEecCCC---------CCCCHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCce-
Q 047066          177 LVNEFVKL---------PTISWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQ-  233 (256)
Q Consensus       177 lv~e~~~~---------~~l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~-  233 (256)
                      ++|||+.+         +.+++.....++.|++             +||||+|||++.++.+||+|||+++........ 
T Consensus        81 lv~e~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~dlkp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~  160 (338)
T cd07859          81 VVFELMESDLHQVIKANDDLTPEHHQFFLYQLLRALKYIHTANVFHRDLKPKNILANADCKLKICDFGLARVAFNDTPTA  160 (338)
T ss_pred             EEEecCCCCHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeEECCCCcEEEccCccccccccccCcc
Confidence            99999965         2345555555666654             699999999999999999999999865332211 


Q ss_pred             -eeeeeeecccc----cccc--cCCCCCCC
Q 047066          234 -LSTMVQGTLGY----YLHT--SQGTLNKE  256 (256)
Q Consensus       234 -~~~~~~Gt~~y----~~~~--~~~t~ksD  256 (256)
                       ......||+.|    .+.+  ..++.++|
T Consensus       161 ~~~~~~~~t~~y~aPE~~~~~~~~~~~~~D  190 (338)
T cd07859         161 IFWTDYVATRWYRAPELCGSFFSKYTPAID  190 (338)
T ss_pred             ccccCCCCCCCcCCHHHHhccccccCchhH
Confidence             12334688888    3322  56777776

Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved phos

>KOG0690 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.85  E-value=4.3e-22  Score=162.52  Aligned_cols=155  Identities=19%  Similarity=0.261  Sum_probs=122.9

Q ss_pred             hhcCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecc---cChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEE
Q 047066          101 IATNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRI---VYQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPL  176 (256)
Q Consensus       101 ~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~---~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~  176 (256)
                      +..++|..+++||+|.||+|.+|+-+ +++.+|+|+++.   ..++...+-+.|-.+|+..+||.+..+.-.|...+.++
T Consensus       165 vTm~dFdfLKvLGkGTFGKVIL~rEKat~k~YAiKIlkKeviiakdEVAHTlTE~RVL~~~~HPFLt~LKYsFQt~drlC  244 (516)
T KOG0690|consen  165 VTMEDFDFLKVLGKGTFGKVILCREKATGKLYAIKILKKEVIIAKDEVAHTLTENRVLQNCRHPFLTSLKYSFQTQDRLC  244 (516)
T ss_pred             eccchhhHHHHhcCCccceEEEEeecccCceeehhhhhhhheeehHHhhhhhhHHHHHHhccCcHHHHhhhhhccCceEE
Confidence            44578999999999999999999965 789999998865   34667788899999999999999999999999999999


Q ss_pred             EEEecCCCCCCCHHHH----------HHHH-------------HHHHhccCCCcEEEcCCCcEEEEecCCceecCCCCce
Q 047066          177 LVNEFVKLPTISWEVR----------IRIA-------------AETAEDIKSINILLDDNYTTKVCDFGASKLVPIDETQ  233 (256)
Q Consensus       177 lv~e~~~~~~l~~~~~----------~~~~-------------~~i~rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~  233 (256)
                      +||||..+|.|-+...          ....             ..+-||||.+|.|+|.+|++||+||||++.-- ....
T Consensus       245 FVMeyanGGeLf~HLsrer~FsE~RtRFYGaEIvsAL~YLHs~~ivYRDlKLENLlLDkDGHIKitDFGLCKE~I-~~g~  323 (516)
T KOG0690|consen  245 FVMEYANGGELFFHLSRERVFSEDRTRFYGAEIVSALGYLHSRNIVYRDLKLENLLLDKDGHIKITDFGLCKEEI-KYGD  323 (516)
T ss_pred             EEEEEccCceEeeehhhhhcccchhhhhhhHHHHHHhhhhhhCCeeeeechhhhheeccCCceEeeecccchhcc-cccc
Confidence            9999999988743221          1111             11227999999999999999999999998532 2222


Q ss_pred             eeeeeeecccc----cccccCCCCCCC
Q 047066          234 LSTMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       234 ~~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      ...+.||||.|    .+....|..+.|
T Consensus       324 t~kTFCGTPEYLAPEVleDnDYgraVD  350 (516)
T KOG0690|consen  324 TTKTFCGTPEYLAPEVLEDNDYGRAVD  350 (516)
T ss_pred             eeccccCChhhcCchhhccccccceee
Confidence            34568999999    555666666554

>cd05603 STKc_SGK2 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 2

Probab=99.85  E-value=2e-20  Score=159.41  Aligned_cols=146  Identities=25%  Similarity=0.285  Sum_probs=110.6

Q ss_pred             ceeeeeCceEEEEEEEC-CCcEEEEEEecccC---hhHHHHHHHHHH-HHHhCCCCcccceeeEEEECCEEEEEEecCCC
Q 047066          110 RMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY---QSQIEQCINKVV-VLSQINHRNVVGLLGCCLETEVPLLVNEFVKL  184 (256)
Q Consensus       110 ~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~-~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~~  184 (256)
                      +.||+|+||.||+|... ++..+|+|.+....   ......+..|.. +++.++||||+++++.+.+.+..+++|||+++
T Consensus         1 ~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~~~~   80 (321)
T cd05603           1 KVIGKGSFGKVLLAKRKSDGSFYAVKVLQKKTILKKKEQNHIMAERNVLLKNLKHPFLVGLHYSFQTAEKLYFVLDYVNG   80 (321)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHHHHhhHHHHHHHHHHHHHHhCCCCCccceeeEEEcCCEEEEEEcCCCC
Confidence            36999999999999975 68899999875422   223344556654 57888999999999999999999999999998


Q ss_pred             CCCC----------HHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceeeeeeeec
Q 047066          185 PTIS----------WEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGT  241 (256)
Q Consensus       185 ~~l~----------~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~~~~Gt  241 (256)
                      ++|.          ......++.|++             +||||+||+++.++.+||+|||+++....... .....+||
T Consensus        81 ~~L~~~l~~~~~~~~~~~~~~~~qi~~~L~~lH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~~~~~~-~~~~~~gt  159 (321)
T cd05603          81 GELFFHLQRERCFLEPRARFYAAEVASAIGYLHSLNIIYRDLKPENILLDSQGHVVLTDFGLCKEGVEPEE-TTSTFCGT  159 (321)
T ss_pred             CCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeEeccCCHHHeEECCCCCEEEccCCCCccCCCCCC-ccccccCC
Confidence            7752          333334444444             69999999999999999999999986432222 22345699


Q ss_pred             ccc----cccccCCCCCCC
Q 047066          242 LGY----YLHTSQGTLNKE  256 (256)
Q Consensus       242 ~~y----~~~~~~~t~ksD  256 (256)
                      +.|    .+.+..++.++|
T Consensus       160 ~~y~aPE~~~~~~~~~~~D  178 (321)
T cd05603         160 PEYLAPEVLRKEPYDRTVD  178 (321)
T ss_pred             cccCCHHHhcCCCCCCcCc
Confidence            999    555667888887

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more restricted distribution that SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1.

>cd05575 STKc_SGK Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase

Probab=99.85  E-value=2.7e-20  Score=158.79  Aligned_cols=146  Identities=25%  Similarity=0.290  Sum_probs=111.3

Q ss_pred             ceeeeeCceEEEEEEEC-CCcEEEEEEecccC---hhHHHHHHHHHH-HHHhCCCCcccceeeEEEECCEEEEEEecCCC
Q 047066          110 RMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY---QSQIEQCINKVV-VLSQINHRNVVGLLGCCLETEVPLLVNEFVKL  184 (256)
Q Consensus       110 ~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~-~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~~  184 (256)
                      +.||+|+||+||+|..+ +++.||+|.+....   ......+..|.. +++.++||||+++++.+...+..+++|||+++
T Consensus         1 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~~~~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~   80 (323)
T cd05575           1 KVIGKGSFGKVLLAKHKADGKFYAVKVLQKKAILKKKEQKHIMAERNVLLKNVKHPFLVGLHYSFQTADKLYFVLDYVNG   80 (323)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhhCCCCCCCCeeEEEEeCCEEEEEEcCCCC
Confidence            46999999999999975 68899999886432   223345556655 46788999999999999999999999999999


Q ss_pred             CCC----------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceeeeeeeec
Q 047066          185 PTI----------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGT  241 (256)
Q Consensus       185 ~~l----------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~~~~Gt  241 (256)
                      ++|          ++.....++.|++             |||||+|||++.++.+||+|||+++....... .....+||
T Consensus        81 g~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~givH~dikp~NIll~~~~~~kl~Dfg~~~~~~~~~~-~~~~~~gt  159 (323)
T cd05575          81 GELFFHLQRERSFPEPRARFYAAEIASALGYLHSLNIIYRDLKPENILLDSQGHVVLTDFGLCKEGIEHSK-TTSTFCGT  159 (323)
T ss_pred             CCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeEeCCCCHHHeEECCCCcEEEeccCCCcccccCCC-ccccccCC
Confidence            776          3333344444444             69999999999999999999999976432222 22345699


Q ss_pred             ccc----cccccCCCCCCC
Q 047066          242 LGY----YLHTSQGTLNKE  256 (256)
Q Consensus       242 ~~y----~~~~~~~t~ksD  256 (256)
                      +.|    .+.+..++.++|
T Consensus       160 ~~y~aPE~~~~~~~~~~~D  178 (323)
T cd05575         160 PEYLAPEVLRKQPYDRTVD  178 (323)
T ss_pred             hhhcChhhhcCCCCCcccc
Confidence            999    566677888887

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell pr

>KOG0660 consensus Mitogen-activated protein kinase [Signal transduction mechanisms]

Probab=99.85  E-value=6.8e-21  Score=157.25  Aligned_cols=153  Identities=25%  Similarity=0.337  Sum_probs=120.5

Q ss_pred             CCCcccceeeeeCceEEEEEEEC-CCcEEEEEEeccc--ChhHHHHHHHHHHHHHhCCCCcccceeeEEEE-----CCEE
Q 047066          104 NNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIV--YQSQIEQCINKVVVLSQINHRNVVGLLGCCLE-----TEVP  175 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~-----~~~~  175 (256)
                      ..|...+.||.|+||.|+.+..+ +|..||+|++...  ......+..+|+.+|+.++|+||+.+.+.+..     -+.+
T Consensus        22 ~~y~~~~~iG~GAyGvVcsA~~~~t~~~VAIKKi~~~F~~~~~akRtlRElklLr~~~HeNIi~l~di~~p~~~~~f~Dv  101 (359)
T KOG0660|consen   22 RYYVLIEPIGRGAYGVVCSAKDKRTGEKVAIKKILNPFENQIDAKRTLRELKLLRHLRHENIIGLLDIFRPPSRDKFNDV  101 (359)
T ss_pred             ceecccccccCcceeeEEEEEEcCCCCEeehhhhhhhhhchHHHHHHHHHHHHHHHhcCCCcceEEeeccccccccccee
Confidence            45666789999999999999865 7899999998743  35566789999999999999999999998875     3468


Q ss_pred             EEEEecCCC---------CCCCHHHHHHHHH-------------HHHhccCCCcEEEcCCCcEEEEecCCceecCCC-Cc
Q 047066          176 LLVNEFVKL---------PTISWEVRIRIAA-------------ETAEDIKSINILLDDNYTTKVCDFGASKLVPID-ET  232 (256)
Q Consensus       176 ~lv~e~~~~---------~~l~~~~~~~~~~-------------~i~rdlk~~NiLi~~~~~~ki~DFGla~~~~~~-~~  232 (256)
                      |+|+|+|+.         .+|+........-             -+||||||+|+|++.+..+||+|||+|+..... ..
T Consensus       102 YiV~elMetDL~~iik~~~~L~d~H~q~f~YQiLrgLKyiHSAnViHRDLKPsNll~n~~c~lKI~DFGLAR~~~~~~~~  181 (359)
T KOG0660|consen  102 YLVFELMETDLHQIIKSQQDLTDDHAQYFLYQILRGLKYIHSANVIHRDLKPSNLLLNADCDLKICDFGLARYLDKFFED  181 (359)
T ss_pred             EEehhHHhhHHHHHHHcCccccHHHHHHHHHHHHHhcchhhcccccccccchhheeeccCCCEEeccccceeeccccCcc
Confidence            999999854         3366555443333             355799999999999999999999999988542 12


Q ss_pred             eeeeeeeecccc-----cccccCCCCCCC
Q 047066          233 QLSTMVQGTLGY-----YLHTSQGTLNKE  256 (256)
Q Consensus       233 ~~~~~~~Gt~~y-----~~~~~~~t~ksD  256 (256)
                      ...|.-+-|.+|     .+...+||.+.|
T Consensus       182 ~~mTeYVaTRWYRAPElll~~~~Yt~aiD  210 (359)
T KOG0660|consen  182 GFMTEYVATRWYRAPELLLNSSEYTKAID  210 (359)
T ss_pred             cchhcceeeeeecCHHHHhccccccchhh
Confidence            233555688899     677888888776

>cd05617 STKc_aPKC_zeta Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C zeta

Probab=99.85  E-value=2.5e-20  Score=159.35  Aligned_cols=146  Identities=28%  Similarity=0.343  Sum_probs=115.2

Q ss_pred             ceeeeeCceEEEEEEEC-CCcEEEEEEecccC---hhHHHHHHHHHHHHHhC-CCCcccceeeEEEECCEEEEEEecCCC
Q 047066          110 RMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY---QSQIEQCINKVVVLSQI-NHRNVVGLLGCCLETEVPLLVNEFVKL  184 (256)
Q Consensus       110 ~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~lv~e~~~~  184 (256)
                      +.||+|+||+||++... +++.+|+|.+....   ....+.+..|..++.++ +||||+++++++...+..++||||+++
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~   80 (327)
T cd05617           1 RVIGRGSYAKVLLVRLKKNDQIYAMKVVKKELVHDDEDIDWVQTEKHVFEQASSNPFLVGLHSCFQTTSRLFLVIEYVNG   80 (327)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhhcCCCCEeeEEEEEEeCCEEEEEEeCCCC
Confidence            46999999999999975 57899999886432   33456688999999888 799999999999999999999999998


Q ss_pred             CCC----------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceeeeeeeec
Q 047066          185 PTI----------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGT  241 (256)
Q Consensus       185 ~~l----------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~~~~Gt  241 (256)
                      ++|          ++.....++.|++             |||||+|||++.++.+||+|||+++........ ....+||
T Consensus        81 ~~L~~~~~~~~~l~~~~~~~~~~qi~~al~~lH~~~ivHrDlkp~Nili~~~~~~kl~Dfg~~~~~~~~~~~-~~~~~gt  159 (327)
T cd05617          81 GDLMFHMQRQRKLPEEHARFYAAEICIALNFLHERGIIYRDLKLDNVLLDADGHIKLTDYGMCKEGLGPGDT-TSTFCGT  159 (327)
T ss_pred             CcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHEEEeCCCCEEEeccccceeccCCCCc-eecccCC
Confidence            765          3444455555544             699999999999999999999999864322221 2345699


Q ss_pred             ccc----cccccCCCCCCC
Q 047066          242 LGY----YLHTSQGTLNKE  256 (256)
Q Consensus       242 ~~y----~~~~~~~t~ksD  256 (256)
                      +.|    .+.+..++.++|
T Consensus       160 ~~y~aPE~~~~~~~~~~~D  178 (327)
T cd05617         160 PNYIAPEILRGEEYGFSVD  178 (327)
T ss_pred             cccCCHHHHCCCCCCchhe
Confidence            999    556777888887

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, zeta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-zeta plays a critical role in activating the glucose transport response. It is activated by glucose, insulin, and exercise through diverse pathways

>cd06619 PKc_MKK5 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 5

Probab=99.85  E-value=4.6e-20  Score=154.07  Aligned_cols=149  Identities=21%  Similarity=0.344  Sum_probs=119.4

Q ss_pred             CCcccceeeeeCceEEEEEEEC-CCcEEEEEEeccc-ChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEecC
Q 047066          105 NYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIV-YQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEFV  182 (256)
Q Consensus       105 ~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~  182 (256)
                      +|++.++||+|+||.||+|... ++..+|+|.+... .....+.+.+|+.++++++|||++++++.+...+..++++||+
T Consensus         2 ~~~~~~~lg~g~~~~v~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~   81 (279)
T cd06619           2 DIQYQEILGHGNGGTVYKAYHLLTRRILAVKVIPLDITVELQKQIMSELEILYKCDSPYIIGFYGAFFVENRISICTEFM   81 (279)
T ss_pred             cchheeeeccCCCeEEEEEEEcCCCcEEEEEEEecCCChHHHHHHHHHHHHHHhCCCCCeeeEEEEEEECCEEEEEEecC
Confidence            5778899999999999999864 6889999987543 3344567899999999999999999999999999999999999


Q ss_pred             CCCCCC------HHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceeeeeeeeccc
Q 047066          183 KLPTIS------WEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTLG  243 (256)
Q Consensus       183 ~~~~l~------~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~~~~Gt~~  243 (256)
                      +++++.      +.....++.+++             +||||+|||++.++.+||+|||++..+....   .+...||+.
T Consensus        82 ~~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nill~~~~~~~l~dfg~~~~~~~~~---~~~~~~~~~  158 (279)
T cd06619          82 DGGSLDVYRKIPEHVLGRIAVAVVKGLTYLWSLKILHRDVKPSNMLVNTRGQVKLCDFGVSTQLVNSI---AKTYVGTNA  158 (279)
T ss_pred             CCCChHHhhcCCHHHHHHHHHHHHHHHHHHHHCCEeeCCCCHHHEEECCCCCEEEeeCCcceeccccc---ccCCCCChh
Confidence            998763      334445555544             5999999999999999999999998764322   223458888


Q ss_pred             c----cccccCCCCCCC
Q 047066          244 Y----YLHTSQGTLNKE  256 (256)
Q Consensus       244 y----~~~~~~~t~ksD  256 (256)
                      |    .+....++.++|
T Consensus       159 y~aPE~~~~~~~~~~~D  175 (279)
T cd06619         159 YMAPERISGEQYGIHSD  175 (279)
T ss_pred             hcCceeecCCCCCCcch
Confidence            8    555667777777

Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that p

>cd05620 STKc_nPKC_delta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C delta

Probab=99.84  E-value=2.7e-20  Score=158.39  Aligned_cols=146  Identities=23%  Similarity=0.313  Sum_probs=112.7

Q ss_pred             ceeeeeCceEEEEEEEC-CCcEEEEEEecccC---hhHHHHHHHHHHHHHhC-CCCcccceeeEEEECCEEEEEEecCCC
Q 047066          110 RMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY---QSQIEQCINKVVVLSQI-NHRNVVGLLGCCLETEVPLLVNEFVKL  184 (256)
Q Consensus       110 ~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~lv~e~~~~  184 (256)
                      +.||+|+||.||+|..+ ++..+|+|.++...   ....+....|..++... +||||+++++++...+..++||||+.+
T Consensus         1 ~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~E~~~~   80 (316)
T cd05620           1 KVLGKGSFGKVLLAELKGKGEYFAVKALKKDVVLIDDDVECTMVEKRVLALAWENPFLTHLYCTFQTKEHLFFVMEFLNG   80 (316)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhcchHHHHHHHHHHHHhccCCCCccCeeEEEEeCCEEEEEECCCCC
Confidence            46999999999999976 68899999886432   23345677788888765 899999999999999999999999998


Q ss_pred             CCC----------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceeeeeeeec
Q 047066          185 PTI----------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGT  241 (256)
Q Consensus       185 ~~l----------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~~~~Gt  241 (256)
                      ++|          +......++.|++             |||||+|||++.++.+||+|||+++....... .....+||
T Consensus        81 g~L~~~i~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivHrDlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~-~~~~~~gt  159 (316)
T cd05620          81 GDLMFHIQDKGRFDLYRATFYAAEIVCGLQFLHSKGIIYRDLKLDNVMLDRDGHIKIADFGMCKENVFGDN-RASTFCGT  159 (316)
T ss_pred             CcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeEecCCCHHHeEECCCCCEEeCccCCCeecccCCC-ceeccCCC
Confidence            765          3333344444443             69999999999999999999999985432222 23345699


Q ss_pred             ccc----cccccCCCCCCC
Q 047066          242 LGY----YLHTSQGTLNKE  256 (256)
Q Consensus       242 ~~y----~~~~~~~t~ksD  256 (256)
                      +.|    .+.+..++.++|
T Consensus       160 ~~y~aPE~~~~~~~~~~~D  178 (316)
T cd05620         160 PDYIAPEILQGLKYTFSVD  178 (316)
T ss_pred             cCccCHHHHcCCCCCcccc
Confidence            999    556677888887

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. I

>cd05619 STKc_nPKC_theta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta

Probab=99.84  E-value=3.8e-20  Score=157.50  Aligned_cols=146  Identities=27%  Similarity=0.342  Sum_probs=112.7

Q ss_pred             ceeeeeCceEEEEEEEC-CCcEEEEEEecccC---hhHHHHHHHHHHHHHhC-CCCcccceeeEEEECCEEEEEEecCCC
Q 047066          110 RMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY---QSQIEQCINKVVVLSQI-NHRNVVGLLGCCLETEVPLLVNEFVKL  184 (256)
Q Consensus       110 ~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~lv~e~~~~  184 (256)
                      +.||+|+||+||+|... +++.||+|.++...   ....+....|..++... +||||+++++++.+.+..+++|||+++
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~hp~iv~~~~~~~~~~~~~lv~ey~~~   80 (316)
T cd05619           1 KMLGKGSFGKVFLAELKGTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHLYCTFQTKENLFFVMEYLNG   80 (316)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhcchHHHHHHHHHHHHhccCCCcCcceEEEEEeCCEEEEEEeCCCC
Confidence            46999999999999975 57899999886431   23345667788888765 999999999999999999999999998


Q ss_pred             CCC----------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceeeeeeeec
Q 047066          185 PTI----------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGT  241 (256)
Q Consensus       185 ~~l----------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~~~~Gt  241 (256)
                      ++|          ++.....++.|++             |||||+|||++.++.+||+|||+++....... ......||
T Consensus        81 g~L~~~l~~~~~~~~~~~~~~~~qi~~al~~LH~~~ivHrdikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~-~~~~~~gt  159 (316)
T cd05619          81 GDLMFHIQSCHKFDLPRATFYAAEIICGLQFLHSKGIVYRDLKLDNILLDTDGHIKIADFGMCKENMLGDA-KTCTFCGT  159 (316)
T ss_pred             CcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhCCeEeCCCCHHHEEECCCCCEEEccCCcceECCCCCC-ceeeecCC
Confidence            775          3334444555544             69999999999999999999999986432222 22345699


Q ss_pred             ccc----cccccCCCCCCC
Q 047066          242 LGY----YLHTSQGTLNKE  256 (256)
Q Consensus       242 ~~y----~~~~~~~t~ksD  256 (256)
                      +.|    .+.+..++.++|
T Consensus       160 ~~y~aPE~~~~~~~~~~~D  178 (316)
T cd05619         160 PDYIAPEILLGQKYNTSVD  178 (316)
T ss_pred             ccccCHHHHcCCCCCchhh
Confidence            999    555667788887

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in

>cd05148 PTKc_Srm_Brk Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

Probab=99.84  E-value=7.8e-21  Score=156.87  Aligned_cols=155  Identities=19%  Similarity=0.328  Sum_probs=121.5

Q ss_pred             hhcCCCcccceeeeeCceEEEEEEECCCcEEEEEEecccChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEe
Q 047066          101 IATNNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNE  180 (256)
Q Consensus       101 ~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e  180 (256)
                      .+..+|++.+.||+|+||.||+|...++..+++|.+........+.+..|+.+++.++||||+++++++...+..+++||
T Consensus         3 ~~~~~y~~~~~ig~g~~~~vy~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e   82 (261)
T cd05148           3 RPREEFTLERKLGSGYFGEVWEGLWKNRVRVAIKILKSDDLLKQQDFQKEVQALKRLRHKHLISLFAVCSVGEPVYIITE   82 (261)
T ss_pred             CcHHHHHHhhhhccCCCccEEEeEecCCCcEEEEeccccchhhHHHHHHHHHHHhcCCCcchhheeeeEecCCCeEEEEe
Confidence            45667899999999999999999988889999999876665556788999999999999999999999999999999999


Q ss_pred             cCCCCCC------------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceee
Q 047066          181 FVKLPTI------------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLS  235 (256)
Q Consensus       181 ~~~~~~l------------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~  235 (256)
                      |+++++|            ++.....++.+++             +||+|+||++++++.+||+|||++.......... 
T Consensus        83 ~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~~~i~h~dl~~~nilv~~~~~~kl~d~g~~~~~~~~~~~~-  161 (261)
T cd05148          83 LMEKGSLLAFLRSPEGQVLPVASLIDMACQVAEGMAYLEEQNSIHRDLAARNILVGEDLVCKVADFGLARLIKEDVYLS-  161 (261)
T ss_pred             ecccCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHCCeeccccCcceEEEcCCceEEEccccchhhcCCccccc-
Confidence            9987654            4444455555543             6999999999999999999999998764332211 


Q ss_pred             eeeeecccc----cccccCCCCCCC
Q 047066          236 TMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       236 ~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      ....+++.|    ....+.++.++|
T Consensus       162 ~~~~~~~~~~~PE~~~~~~~~~~~D  186 (261)
T cd05148         162 SDKKIPYKWTAPEAASHGTFSTKSD  186 (261)
T ss_pred             cCCCCceEecCHHHHccCCCCchhh
Confidence            122245555    444556666665

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase dom

>KOG1989 consensus ARK protein kinase family [Signal transduction mechanisms]

Probab=99.84  E-value=3.5e-21  Score=174.29  Aligned_cols=161  Identities=17%  Similarity=0.319  Sum_probs=125.9

Q ss_pred             hHHHHhhcCCCcccceeeeeCceEEEEEEECCC-cEEEEEEecccChhHHHHHHHHHHHHHhCC-CCcccceeeE-EEE-
Q 047066           96 AGELKIATNNYAYDRMIGRGGYGTVFLGSLSDN-KAIAIKKSRIVYQSQIEQCINKVVVLSQIN-HRNVVGLLGC-CLE-  171 (256)
Q Consensus        96 ~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~-~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~l~~~-~~~-  171 (256)
                      ...+.+...++++.++|.+|+|+.||.+....+ ..+|+|++-..++...+.+.+|+++|+.|+ |+|||.+++. ... 
T Consensus        29 G~~~~Vg~~~v~V~~vLAEGGFa~VYla~~~~~~~~~AlKrm~~~de~~L~~v~~EI~~MK~L~gh~nIV~yidss~~~~  108 (738)
T KOG1989|consen   29 GQTFTVGSHRVTVEKVLAEGGFAQVYLAQDVKGGKKYALKRMYVNDEEALNAVKREIDIMKLLSGHKNIVSYIDSSAINR  108 (738)
T ss_pred             ceEEEECCEEEEEEEEEccCCcEEEEEEEecCCCceeeeeeeecCCHHHHHHHHHHHHHHHHhcCCCceeeEeccccccc
Confidence            344567778889999999999999999997655 999999987778888899999999999995 9999999993 221 


Q ss_pred             -----CCEEEEEEecCCCCC------------CCHHHHHHHHHHHH---------------hccCCCcEEEcCCCcEEEE
Q 047066          172 -----TEVPLLVNEFVKLPT------------ISWEVRIRIAAETA---------------EDIKSINILLDDNYTTKVC  219 (256)
Q Consensus       172 -----~~~~~lv~e~~~~~~------------l~~~~~~~~~~~i~---------------rdlk~~NiLi~~~~~~ki~  219 (256)
                           .-+.+++||||++|.            |++...++|+.+++               ||||.+||||+.+++.|||
T Consensus       109 ~~~~~~~EvllLmEyC~gg~Lvd~mn~Rlq~~lte~eVLkIf~dv~~AVa~mH~~~pPiIHRDLKiENvLls~~g~~KLC  188 (738)
T KOG1989|consen  109 SSNNGVWEVLLLMEYCKGGSLVDFMNTRLQTRLTEDEVLKIFYDVCEAVAAMHYLKPPIIHRDLKIENVLLSADGNYKLC  188 (738)
T ss_pred             cCCCceeEEEeehhhccCCcHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHhcCCCccchhhhhhhheEEcCCCCEEeC
Confidence                 135889999999755            45666677777655               7999999999999999999


Q ss_pred             ecCCceecCCCCceeee--------eeeecccc-------cccccCCCCCCC
Q 047066          220 DFGASKLVPIDETQLST--------MVQGTLGY-------YLHTSQGTLNKE  256 (256)
Q Consensus       220 DFGla~~~~~~~~~~~~--------~~~Gt~~y-------~~~~~~~t~ksD  256 (256)
                      |||.|......-.....        ..--|+-|       .+.+..+++|+|
T Consensus       189 DFGSatt~~~~~~~~~e~~~ve~eI~k~TTp~YRsPEMIDlysg~pI~eKsD  240 (738)
T KOG1989|consen  189 DFGSATTKILSPTSAQEVNYVEEEIEKYTTPQYRSPEMIDLYSGLPIGEKSD  240 (738)
T ss_pred             cccccccccCCCccHHHHHHHHHHHHhhCCccccChHHHhhhcCCCCcchhH
Confidence            99998643222111000        12367788       677788888988

>cd05113 PTKc_Btk_Bmx Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome

Probab=99.84  E-value=1.4e-20  Score=155.19  Aligned_cols=152  Identities=22%  Similarity=0.327  Sum_probs=117.6

Q ss_pred             CCCcccceeeeeCceEEEEEEECCCcEEEEEEecccChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEecCC
Q 047066          104 NNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEFVK  183 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~  183 (256)
                      ++|++.+.||+|+||.||.+...++..+|+|.+..... ..+.+.+|+.++++++||||+++++++...+..+++|||+.
T Consensus         4 ~~~~~~~~lg~G~~~~vy~~~~~~~~~~aik~~~~~~~-~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~   82 (256)
T cd05113           4 KDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSM-SEDEFIEEAKVMMKLSHEKLVQLYGVCTKQRPIYIVTEYMS   82 (256)
T ss_pred             HHeEEeeEecCcccceEEEEEecCCCcEEEEEcCCCcc-cHHHHHHHHHHHhcCCCCCeeeEEEEEccCCCcEEEEEcCC
Confidence            46788899999999999999987777899998764332 23678999999999999999999999998888999999998


Q ss_pred             CCC-----------CCHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceeeeeee
Q 047066          184 LPT-----------ISWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQ  239 (256)
Q Consensus       184 ~~~-----------l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~~~~  239 (256)
                      +++           +++.....++.+++             +||+|+||+++.++.+||+|||+++....+.........
T Consensus        83 ~~~l~~~i~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~nili~~~~~~kl~d~g~~~~~~~~~~~~~~~~~  162 (256)
T cd05113          83 NGCLLNYLREHGKRFQPSQLLEMCKDVCEGMAYLESKQFIHRDLAARNCLVDDQGCVKVSDFGLSRYVLDDEYTSSVGSK  162 (256)
T ss_pred             CCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCeeccccCcceEEEcCCCCEEECCCccceecCCCceeecCCCc
Confidence            754           34555566666655             599999999999999999999999876543322221223


Q ss_pred             ecccc----cccccCCCCCCC
Q 047066          240 GTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       240 Gt~~y----~~~~~~~t~ksD  256 (256)
                      ++..|    ...++.++.++|
T Consensus       163 ~~~~y~~pe~~~~~~~~~~~D  183 (256)
T cd05113         163 FPVRWSPPEVLLYSKFSSKSD  183 (256)
T ss_pred             cChhhCCHHHHhcCcccchhH
Confidence            44556    444566777766

Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds

>cd07872 STKc_PCTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase

Probab=99.84  E-value=2.2e-20  Score=158.29  Aligned_cols=152  Identities=23%  Similarity=0.312  Sum_probs=114.8

Q ss_pred             CCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC-hhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEec
Q 047066          104 NNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY-QSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEF  181 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~  181 (256)
                      ++|.+.+.||+|+||.||+|..+ ++..+|+|.++... ......+.+|+.+++.++||||+++++++...+..+++|||
T Consensus         6 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~   85 (309)
T cd07872           6 ETYIKLEKLGEGTYATVFKGRSKLTENLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIVHTDKSLTLVFEY   85 (309)
T ss_pred             CceEEEEEecccCCEEEEEEEecCCCCeEEEEEeeccccCCcchhHHHHHHHHHhCCCCCcceEEEEEeeCCeEEEEEeC
Confidence            56889999999999999999865 67889999886443 22334678899999999999999999999999999999999


Q ss_pred             CCCC----------CCCHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceeeeee
Q 047066          182 VKLP----------TISWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMV  238 (256)
Q Consensus       182 ~~~~----------~l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~~~  238 (256)
                      +++.          .++......++.|++             |||||+|||++.++.+||+|||+++......... ...
T Consensus        86 ~~~~l~~~~~~~~~~~~~~~~~~~~~qi~~aL~~lH~~~ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~~~-~~~  164 (309)
T cd07872          86 LDKDLKQYMDDCGNIMSMHNVKIFLYQILRGLAYCHRRKVLHRDLKPQNLLINERGELKLADFGLARAKSVPTKTY-SNE  164 (309)
T ss_pred             CCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEECCCCCEEECccccceecCCCcccc-ccc
Confidence            9752          234444444454443             6999999999999999999999998654332221 223


Q ss_pred             eecccc----cc-cccCCCCCCC
Q 047066          239 QGTLGY----YL-HTSQGTLNKE  256 (256)
Q Consensus       239 ~Gt~~y----~~-~~~~~t~ksD  256 (256)
                      .||+.|    .+ ....++.++|
T Consensus       165 ~~~~~y~aPE~~~~~~~~~~~~D  187 (309)
T cd07872         165 VVTLWYRPPDVLLGSSEYSTQID  187 (309)
T ss_pred             cccccccCCHHHhCCCCCCcHHH
Confidence            477777    22 2345566655

Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could play

>cd05107 PTKc_PDGFR_beta Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta

Probab=99.84  E-value=1.7e-20  Score=164.35  Aligned_cols=91  Identities=20%  Similarity=0.448  Sum_probs=77.3

Q ss_pred             HHHHhhcCCCcccceeeeeCceEEEEEEEC------CCcEEEEEEecccC-hhHHHHHHHHHHHHHhCC-CCcccceeeE
Q 047066           97 GELKIATNNYAYDRMIGRGGYGTVFLGSLS------DNKAIAIKKSRIVY-QSQIEQCINKVVVLSQIN-HRNVVGLLGC  168 (256)
Q Consensus        97 ~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~------~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~-h~niv~l~~~  168 (256)
                      .+|+++.++|.+.+.||+|+||.||+|.++      .+..||+|+++... ....+.+.+|+.++..+. ||||++++++
T Consensus        30 ~~~~~~~~~~~~~~~lG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~E~~~l~~l~~H~niv~~~~~  109 (401)
T cd05107          30 SAWEMPRDNLVLGRTLGSGAFGRVVEATAHGLSHSQSTMKVAVKMLKSTARSSEKQALMSELKIMSHLGPHLNIVNLLGA  109 (401)
T ss_pred             CcceecHHHeehhhhccCCCceeEEEEEEcCCCCCCCceEEEEEecCCCCChhHHHHHHHHHHHHHhcCCCCCeEEEEEE
Confidence            457778888999999999999999999853      24689999987543 333457899999999996 9999999999


Q ss_pred             EEECCEEEEEEecCCCCCC
Q 047066          169 CLETEVPLLVNEFVKLPTI  187 (256)
Q Consensus       169 ~~~~~~~~lv~e~~~~~~l  187 (256)
                      |...+..++++||+++|+|
T Consensus       110 ~~~~~~~~iv~E~~~~g~L  128 (401)
T cd05107         110 CTKGGPIYIITEYCRYGDL  128 (401)
T ss_pred             EccCCCcEEEEeccCCCcH
Confidence            9999999999999998776

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-D

>cd05608 STKc_GRK1 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 1

Probab=99.84  E-value=3.1e-20  Score=155.30  Aligned_cols=144  Identities=20%  Similarity=0.269  Sum_probs=113.3

Q ss_pred             eeeeCceEEEEEEEC-CCcEEEEEEecccC---hhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEecCCCCCC
Q 047066          112 IGRGGYGTVFLGSLS-DNKAIAIKKSRIVY---QSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEFVKLPTI  187 (256)
Q Consensus       112 lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~~~~l  187 (256)
                      ||+|+||+||++..+ +++.+|+|.+....   ....+.+..|+.+++.++||||+++.+++...+..+++|||+++++|
T Consensus         1 lg~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~g~L   80 (280)
T cd05608           1 LGKGGFGEVSACQMRATGKLYACKKLNKKRLKKRKGYEGAMVEKRILAKVHSRFIVSLAYAFQTKTDLCLVMTIMNGGDL   80 (280)
T ss_pred             CCCCCceeEEEEEEccCCcEEEEEeeeHHHHhhhHHHHHHHHHHHHHHhCCCCcEeeeeEEEcCCCeEEEEEeCCCCCCH
Confidence            689999999999865 68899999875432   22335678899999999999999999999999999999999998776


Q ss_pred             C--------------HHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceeeeeeee
Q 047066          188 S--------------WEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQG  240 (256)
Q Consensus       188 ~--------------~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~~~~G  240 (256)
                      .              +...+.++.|++             +||||+||++++++.+||+|||++..+...... .....|
T Consensus        81 ~~~~~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~~~~~~-~~~~~g  159 (280)
T cd05608          81 RYHIYNVDEENPGFPEPRACFYTAQIISGLEHLHQRRIIYRDLKPENVLLDNDGNVRISDLGLAVELKDGQSK-TKGYAG  159 (280)
T ss_pred             HHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCCEEEeeCccceecCCCCcc-ccccCC
Confidence            3              333444555544             699999999999999999999999876543222 223458


Q ss_pred             cccc----cccccCCCCCCC
Q 047066          241 TLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       241 t~~y----~~~~~~~t~ksD  256 (256)
                      |+.|    .+.++.++.++|
T Consensus       160 ~~~y~aPE~~~~~~~~~~~D  179 (280)
T cd05608         160 TPGFMAPELLQGEEYDFSVD  179 (280)
T ss_pred             CcCccCHHHhcCCCCCcccc
Confidence            8888    566677788877

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK1, also called rhodopsin kinase, belongs to the visual g

>cd07862 STKc_CDK6 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6

Probab=99.84  E-value=3.8e-20  Score=155.23  Aligned_cols=151  Identities=28%  Similarity=0.368  Sum_probs=114.2

Q ss_pred             CCCcccceeeeeCceEEEEEEEC--CCcEEEEEEecccC--hhHHHHHHHHHHHHHhC---CCCcccceeeEEEE-----
Q 047066          104 NNYAYDRMIGRGGYGTVFLGSLS--DNKAIAIKKSRIVY--QSQIEQCINKVVVLSQI---NHRNVVGLLGCCLE-----  171 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~V~~~~~~--~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l---~h~niv~l~~~~~~-----  171 (256)
                      ++|++.+.||+|+||.||+|...  ++..+|+|.++...  ......+.+|+.+++.+   +||||+++++++..     
T Consensus         1 ~~Y~~~~~lg~G~~g~Vy~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~hpniv~~~~~~~~~~~~~   80 (290)
T cd07862           1 QQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRTDR   80 (290)
T ss_pred             CCcceeeEeccCCCeEEEEEEEcCCCCeEEEEEEEecccCCCCchHHHHHHHHHHHhhcccCCCCcceEEEEEecccCCC
Confidence            36888899999999999999863  46789999876432  22334566788777665   69999999999862     


Q ss_pred             CCEEEEEEecCCC-----------CCCCHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceec
Q 047066          172 TEVPLLVNEFVKL-----------PTISWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLV  227 (256)
Q Consensus       172 ~~~~~lv~e~~~~-----------~~l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~  227 (256)
                      ....+++|||+.+           ..+++.....++.|++             +||||+|||++.++.+||+|||+++..
T Consensus        81 ~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~lH~~~iiH~dlkp~Nil~~~~~~~kl~Dfg~~~~~  160 (290)
T cd07862          81 ETKLTLVFEHVDQDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLHSHRVVHRDLKPQNILVTSSGQIKLADFGLARIY  160 (290)
T ss_pred             CCcEEEEEccCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCeeeCCCCHHHEEEcCCCCEEEccccceEec
Confidence            4568999999865           2245556666666655             699999999999999999999999876


Q ss_pred             CCCCceeeeeeeecccc----cccccCCCCCCC
Q 047066          228 PIDETQLSTMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       228 ~~~~~~~~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      ...  .......||+.|    .+....++.++|
T Consensus       161 ~~~--~~~~~~~~~~~y~aPE~~~~~~~~~~~D  191 (290)
T cd07862         161 SFQ--MALTSVVVTLWYRAPEVLLQSSYATPVD  191 (290)
T ss_pred             cCC--cccccccccccccChHHHhCCCCCCccc
Confidence            543  222345689999    455667788887

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytopla

>cd05602 STKc_SGK1 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 1

Probab=99.84  E-value=4.4e-20  Score=157.64  Aligned_cols=146  Identities=24%  Similarity=0.289  Sum_probs=109.4

Q ss_pred             ceeeeeCceEEEEEEEC-CCcEEEEEEecccC---hhHHHHHHHHHH-HHHhCCCCcccceeeEEEECCEEEEEEecCCC
Q 047066          110 RMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY---QSQIEQCINKVV-VLSQINHRNVVGLLGCCLETEVPLLVNEFVKL  184 (256)
Q Consensus       110 ~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~-~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~~  184 (256)
                      +.||+|+||.||++... +++.+|+|.+....   ......+..|.. +++.++||||+++++++...+..+++|||+++
T Consensus         1 ~~lg~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~h~~Iv~~~~~~~~~~~~~lv~e~~~~   80 (325)
T cd05602           1 KVIGKGSFGKVLLARHKAEEKFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGLHFSFQTADKLYFVLDYING   80 (325)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHHHhhhHHHHHHHHHHHHHHhCCCCCCCceeEEEEcCCeEEEEEeCCCC
Confidence            36999999999999975 57789999875422   122234455544 56788999999999999999999999999999


Q ss_pred             CCCC----------HHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceeeeeeeec
Q 047066          185 PTIS----------WEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGT  241 (256)
Q Consensus       185 ~~l~----------~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~~~~Gt  241 (256)
                      ++|.          ......++.|++             |||||+|||++.++.+||+|||+++....... .....+||
T Consensus        81 ~~L~~~~~~~~~~~~~~~~~~~~qi~~~L~~lH~~giiHrDlkp~Nili~~~~~~kl~DfG~a~~~~~~~~-~~~~~~gt  159 (325)
T cd05602          81 GELFYHLQRERCFLEPRARFYAAEIASALGYLHSLNIVYRDLKPENILLDSQGHIVLTDFGLCKENIEHNG-TTSTFCGT  159 (325)
T ss_pred             CcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeEecCCCHHHeEECCCCCEEEccCCCCcccccCCC-CcccccCC
Confidence            7763          223333444433             79999999999999999999999986432222 22345699


Q ss_pred             ccc----cccccCCCCCCC
Q 047066          242 LGY----YLHTSQGTLNKE  256 (256)
Q Consensus       242 ~~y----~~~~~~~t~ksD  256 (256)
                      +.|    .+.+..++.++|
T Consensus       160 ~~y~aPE~~~~~~~~~~~D  178 (325)
T cd05602         160 PEYLAPEVLHKQPYDRTVD  178 (325)
T ss_pred             ccccCHHHHcCCCCCCccc
Confidence            999    566677888887

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously expressed and is under transcriptional control of numerous stimuli including cell stress (cell shrinkage), serum, hormones (gluco- and mineralocorticoids), gonadotropins, growth factors, interleukin-6, and other cytokines. It plays roles in sodium retention and potassium elimination in the kidney, nutrient transport, salt

>cd05071 PTKc_Src Catalytic domain of the Protein Tyrosine Kinase, Src

Probab=99.84  E-value=2.1e-20  Score=154.77  Aligned_cols=155  Identities=22%  Similarity=0.371  Sum_probs=116.9

Q ss_pred             HhhcCCCcccceeeeeCceEEEEEEECCCcEEEEEEecccChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEE
Q 047066          100 KIATNNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVN  179 (256)
Q Consensus       100 ~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~  179 (256)
                      .++.++|++.+.||+|+||.||+|...++..+++|.+..... ..+.+.+|+.+++.++||||+++++.+.. +..+++|
T Consensus         2 ~~~~~~~~~~~~lg~g~~~~v~~~~~~~~~~valK~~~~~~~-~~~~~~~E~~~l~~l~~~~i~~~~~~~~~-~~~~lv~   79 (262)
T cd05071           2 EIPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTM-SPEAFLQEAQVMKKLRHEKLVQLYAVVSE-EPIYIVT   79 (262)
T ss_pred             CCChHHeeEeeecCCCCCCcEEEEEecCCceEEEEecccCcc-CHHHHHHHHHHHHhCCCCCcceEEEEECC-CCcEEEE
Confidence            345678999999999999999999887667899998875332 23578899999999999999999998754 5579999


Q ss_pred             ecCCCCCCC------------HHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCcee
Q 047066          180 EFVKLPTIS------------WEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQL  234 (256)
Q Consensus       180 e~~~~~~l~------------~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~  234 (256)
                      ||+++++|.            +.....++.+++             +||+|+||++++++.+||+|||+++.+.......
T Consensus        80 e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~aL~~lH~~~i~H~dl~p~Nill~~~~~~~L~dfg~~~~~~~~~~~~  159 (262)
T cd05071          80 EYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTA  159 (262)
T ss_pred             EcCCCCcHHHHHhhccccCCCHHHHHHHHHHHHHHHHHHHHCCccccccCcccEEEcCCCcEEeccCCceeecccccccc
Confidence            999987652            333344444443             6999999999999999999999998765443322


Q ss_pred             eeeeeecccc----cccccCCCCCCC
Q 047066          235 STMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       235 ~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      .....++..|    +..++.++.++|
T Consensus       160 ~~~~~~~~~y~~PE~~~~~~~~~~~D  185 (262)
T cd05071         160 RQGAKFPIKWTAPEAALYGRFTIKSD  185 (262)
T ss_pred             ccCCcccceecCHhHhccCCCCchhh
Confidence            2223355566    445566677766

Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is invo

>cd05570 STKc_PKC Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C

Probab=99.84  E-value=4.6e-20  Score=157.09  Aligned_cols=146  Identities=24%  Similarity=0.320  Sum_probs=114.7

Q ss_pred             ceeeeeCceEEEEEEEC-CCcEEEEEEeccc---ChhHHHHHHHHHHHHHhC-CCCcccceeeEEEECCEEEEEEecCCC
Q 047066          110 RMIGRGGYGTVFLGSLS-DNKAIAIKKSRIV---YQSQIEQCINKVVVLSQI-NHRNVVGLLGCCLETEVPLLVNEFVKL  184 (256)
Q Consensus       110 ~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~lv~e~~~~  184 (256)
                      +.||+|+||.||++..+ ++..+|+|.++..   .......+..|..++..+ +||||+++++++...+..+++|||+++
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~~h~~i~~~~~~~~~~~~~~lv~e~~~~   80 (318)
T cd05570           1 KVLGKGSFGKVLLAELKGTDELYAVKVLKKDVILQDDDVECTMTEKRVLALAGKHPFLTQLHSCFQTKDRLFFVMEYVNG   80 (318)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhccCCCCccceeeEEEcCCEEEEEEcCCCC
Confidence            46999999999999975 5789999988643   233446678899999888 799999999999999999999999988


Q ss_pred             CCC----------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceeeeeeeec
Q 047066          185 PTI----------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGT  241 (256)
Q Consensus       185 ~~l----------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~~~~Gt  241 (256)
                      ++|          ++.....++.|++             +||||+|||+++++.+||+|||+++........ ....+||
T Consensus        81 ~~L~~~~~~~~~l~~~~~~~~~~qi~~~l~~LH~~~ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~~-~~~~~g~  159 (318)
T cd05570          81 GDLMFHIQRSGRFDEPRARFYAAEIVLGLQFLHERGIIYRDLKLDNVLLDSEGHIKIADFGMCKEGILGGVT-TSTFCGT  159 (318)
T ss_pred             CCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhCCeEccCCCHHHeEECCCCcEEecccCCCeecCcCCCc-ccceecC
Confidence            764          4444455555544             699999999999999999999999763222221 2335699


Q ss_pred             ccc----cccccCCCCCCC
Q 047066          242 LGY----YLHTSQGTLNKE  256 (256)
Q Consensus       242 ~~y----~~~~~~~t~ksD  256 (256)
                      +.|    .+.+..++.++|
T Consensus       160 ~~y~aPE~~~~~~~~~~~D  178 (318)
T cd05570         160 PDYIAPEILSYQPYGPAVD  178 (318)
T ss_pred             ccccCHHHhcCCCCCcchh
Confidence            999    566777888887

Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only re

>KOG0986 consensus G protein-coupled receptor kinase [Signal transduction mechanisms]

Probab=99.84  E-value=4.5e-21  Score=162.39  Aligned_cols=154  Identities=23%  Similarity=0.313  Sum_probs=125.9

Q ss_pred             hhcCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC---hhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEE
Q 047066          101 IATNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY---QSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPL  176 (256)
Q Consensus       101 ~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~  176 (256)
                      +..+.|..-++||+|+||+||-|..+ +|+.+|.|++....   +..-...++|-.+|.+++.+.||.+--.+.+++.++
T Consensus       182 vt~n~F~~~RvlGkGGFGEV~acqvraTGKMYAcKkL~KKRiKkr~ge~maLnEk~iL~kV~s~FiVslaYAfeTkd~LC  261 (591)
T KOG0986|consen  182 VTKNTFRVYRVLGKGGFGEVCACQVRATGKMYACKKLDKKRIKKRKGETMALNEKQILEKVSSPFIVSLAYAFETKDALC  261 (591)
T ss_pred             ccccceeeeEEEecccccceeEEEEecchhhHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhccCcEEEEeeeecCCCceE
Confidence            44566788899999999999999865 79999999875322   223356789999999999999999999999999999


Q ss_pred             EEEecCCCCCC------------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCC
Q 047066          177 LVNEFVKLPTI------------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDE  231 (256)
Q Consensus       177 lv~e~~~~~~l------------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~  231 (256)
                      +|+..|+||.|            +....+.++.+|+             |||||+|||+|++|+++|||.|||..+....
T Consensus       262 lVLtlMNGGDLkfHiyn~g~~gF~e~ra~FYAAEi~cGLehlH~~~iVYRDLKPeNILLDd~GhvRISDLGLAvei~~g~  341 (591)
T KOG0986|consen  262 LVLTLMNGGDLKFHIYNHGNPGFDEQRARFYAAEIICGLEHLHRRRIVYRDLKPENILLDDHGHVRISDLGLAVEIPEGK  341 (591)
T ss_pred             EEEEeecCCceeEEeeccCCCCCchHHHHHHHHHHHhhHHHHHhcceeeccCChhheeeccCCCeEeeccceEEecCCCC
Confidence            99999999876            4556666666666             6999999999999999999999999886544


Q ss_pred             ceeeeeeeecccc----cccccCCCCCCC
Q 047066          232 TQLSTMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       232 ~~~~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      .  .+..+||.+|    .++.+.|+...|
T Consensus       342 ~--~~~rvGT~GYMAPEvl~ne~Y~~s~D  368 (591)
T KOG0986|consen  342 P--IRGRVGTVGYMAPEVLQNEVYDFSPD  368 (591)
T ss_pred             c--cccccCcccccCHHHHcCCcccCCcc
Confidence            3  3444799999    677777877665

>PTZ00283 serine/threonine protein kinase; Provisional

Probab=99.84  E-value=3.4e-20  Score=166.74  Aligned_cols=158  Identities=22%  Similarity=0.244  Sum_probs=120.3

Q ss_pred             HHhhcCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEeccc--ChhHHHHHHHHHHHHHhCCCCcccceeeEEEECC--
Q 047066           99 LKIATNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIV--YQSQIEQCINKVVVLSQINHRNVVGLLGCCLETE--  173 (256)
Q Consensus        99 ~~~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~--  173 (256)
                      .....++|.+.+.||+|+||.||++... +++.||+|.+...  .......+.+|+..+..++|+|++++++.+...+  
T Consensus        27 ~~~~~~rY~i~~~LG~G~fG~Vy~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~Ei~~l~~~~h~~iv~~~~~~~~~~~~  106 (496)
T PTZ00283         27 AKEQAKKYWISRVLGSGATGTVLCAKRVSDGEPFAVKVVDMEGMSEADKNRAQAEVCCLLNCDFFSIVKCHEDFAKKDPR  106 (496)
T ss_pred             ccccCCCEEEEEEEecCCCEEEEEEEEcCCCCEEEEEEEecccCCHHHHHHHHHHHHHHhcCCCCcEEEeecceeccccc
Confidence            3344579999999999999999999854 7899999987543  3445567889999999999999999988775432  


Q ss_pred             ------EEEEEEecCCCCCCCH--------------HHHHHHHHHH-------------HhccCCCcEEEcCCCcEEEEe
Q 047066          174 ------VPLLVNEFVKLPTISW--------------EVRIRIAAET-------------AEDIKSINILLDDNYTTKVCD  220 (256)
Q Consensus       174 ------~~~lv~e~~~~~~l~~--------------~~~~~~~~~i-------------~rdlk~~NiLi~~~~~~ki~D  220 (256)
                            ..+++|||+++|+|..              .....++.|+             ||||||+|||++.++.+||+|
T Consensus       107 ~~~~~~~i~lV~Ey~~~gsL~~~l~~~~~~~~~l~e~~~~~i~~qll~aL~~lH~~~IiHrDLKP~NILl~~~~~vkL~D  186 (496)
T PTZ00283        107 NPENVLMIALVLDYANAGDLRQEIKSRAKTNRTFREHEAGLLFIQVLLAVHHVHSKHMIHRDIKSANILLCSNGLVKLGD  186 (496)
T ss_pred             CcccceEEEEEEeCCCCCcHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHEEEeCCCCEEEEe
Confidence                  3689999999987632              2223334443             379999999999999999999


Q ss_pred             cCCceecCCCCc-eeeeeeeecccc----cccccCCCCCCC
Q 047066          221 FGASKLVPIDET-QLSTMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       221 FGla~~~~~~~~-~~~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      ||+++.+..... ......+||+.|    .+.+..++.++|
T Consensus       187 FGls~~~~~~~~~~~~~~~~Gt~~Y~aPE~~~~~~~s~k~D  227 (496)
T PTZ00283        187 FGFSKMYAATVSDDVGRTFCGTPYYVAPEIWRRKPYSKKAD  227 (496)
T ss_pred             cccCeeccccccccccccccCCcceeCHHHhCCCCCCcHHH
Confidence            999987653321 122345699999    556677888877

>cd05067 PTKc_Lck_Blk Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk

Probab=99.84  E-value=3e-20  Score=153.44  Aligned_cols=156  Identities=19%  Similarity=0.359  Sum_probs=119.4

Q ss_pred             HHhhcCCCcccceeeeeCceEEEEEEECCCcEEEEEEecccChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEE
Q 047066           99 LKIATNNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLV  178 (256)
Q Consensus        99 ~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv  178 (256)
                      |++..++|++.+.||+|+||.||+|..++++.+|+|.+..... ..+++.+|+.+++.++|||++++++++. .+..+++
T Consensus         1 ~~~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~a~K~~~~~~~-~~~~~~~E~~~l~~l~h~~i~~~~~~~~-~~~~~~v   78 (260)
T cd05067           1 WEVPRETLKLVKKLGAGQFGEVWMGYYNGHTKVAIKSLKQGSM-SPEAFLAEANLMKQLQHPRLVRLYAVVT-QEPIYII   78 (260)
T ss_pred             CccchHHceeeeeeccCccceEEeeecCCCceEEEEEecCCCC-cHHHHHHHHHHHHhcCCcCeeeEEEEEc-cCCcEEE
Confidence            3566788999999999999999999988889999998865433 3467889999999999999999998864 5668999


Q ss_pred             EecCCCCCC------------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCce
Q 047066          179 NEFVKLPTI------------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQ  233 (256)
Q Consensus       179 ~e~~~~~~l------------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~  233 (256)
                      |||+.+++|            ++.....++.+++             +||+|+||++++++.++|+|||++.........
T Consensus        79 ~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~al~~LH~~~i~H~dl~p~ni~i~~~~~~~l~dfg~~~~~~~~~~~  158 (260)
T cd05067          79 TEYMENGSLVDFLKTPEGIKLTINKLIDMAAQIAEGMAFIERKNYIHRDLRAANILVSETLCCKIADFGLARLIEDNEYT  158 (260)
T ss_pred             EEcCCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHhcCCeecccccHHhEEEcCCCCEEEccCcceeecCCCCcc
Confidence            999988765            3333344444444             699999999999999999999999876533222


Q ss_pred             eeeeeeecccc----cccccCCCCCCC
Q 047066          234 LSTMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       234 ~~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      ......++..|    +..++.++.++|
T Consensus       159 ~~~~~~~~~~y~~pe~~~~~~~~~~~D  185 (260)
T cd05067         159 AREGAKFPIKWTAPEAINYGTFTIKSD  185 (260)
T ss_pred             cccCCcccccccCHHHhccCCcCcccc
Confidence            22223355666    445566677776

Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Sr

>cd07876 STKc_JNK2 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2

Probab=99.84  E-value=5.1e-20  Score=159.36  Aligned_cols=152  Identities=22%  Similarity=0.249  Sum_probs=117.6

Q ss_pred             cCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEeccc--ChhHHHHHHHHHHHHHhCCCCcccceeeEEEECC------
Q 047066          103 TNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIV--YQSQIEQCINKVVVLSQINHRNVVGLLGCCLETE------  173 (256)
Q Consensus       103 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~------  173 (256)
                      .++|++.+.||+|+||.||++... ++..+|+|.+...  .......+.+|+.+++.++||||+++++++...+      
T Consensus        20 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~   99 (359)
T cd07876          20 LKRYQQLKPIGSGAQGIVCAAFDTVLGINVAVKKLSRPFQNQTHAKRAYRELVLLKCVNHKNIISLLNVFTPQKSLEEFQ   99 (359)
T ss_pred             hhceEEEEEeecCCCEEEEEEEEcCCCceeEEEEecccccchhHHHHHHHHHHHHHhCCCCCEeeeeeeeccCCCccccc
Confidence            478999999999999999999864 6889999988543  2334467889999999999999999999987543      


Q ss_pred             EEEEEEecCCCCC-------CCHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCce
Q 047066          174 VPLLVNEFVKLPT-------ISWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQ  233 (256)
Q Consensus       174 ~~~lv~e~~~~~~-------l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~  233 (256)
                      ..+++|||++++.       ++......++.|++             |||||+|||++.++.+||+|||+++....+.  
T Consensus       100 ~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~qi~~~L~~LH~~~ivHrDlkp~NIl~~~~~~~kl~Dfg~a~~~~~~~--  177 (359)
T cd07876         100 DVYLVMELMDANLCQVIHMELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTACTNF--  177 (359)
T ss_pred             eeEEEEeCCCcCHHHHHhccCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEEECCCCCEEEecCCCccccccCc--
Confidence            4799999998743       33444444444443             7999999999999999999999998653322  


Q ss_pred             eeeeeeecccc----cccccCCCCCCC
Q 047066          234 LSTMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       234 ~~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      ......||+.|    .+.+..++.++|
T Consensus       178 ~~~~~~~t~~y~aPE~~~~~~~~~~~D  204 (359)
T cd07876         178 MMTPYVVTRYYRAPEVILGMGYKENVD  204 (359)
T ss_pred             cCCCCcccCCCCCchhccCCCCCcchh
Confidence            12334588888    555667888887

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>cd05097 PTKc_DDR_like Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases

Probab=99.84  E-value=2.2e-20  Score=157.18  Aligned_cols=155  Identities=19%  Similarity=0.338  Sum_probs=117.3

Q ss_pred             hcCCCcccceeeeeCceEEEEEEECC---------------CcEEEEEEeccc-ChhHHHHHHHHHHHHHhCCCCcccce
Q 047066          102 ATNNYAYDRMIGRGGYGTVFLGSLSD---------------NKAIAIKKSRIV-YQSQIEQCINKVVVLSQINHRNVVGL  165 (256)
Q Consensus       102 ~~~~~~~~~~lg~G~~g~V~~~~~~~---------------~~~vavK~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l  165 (256)
                      +.++|++.+.||+|+||.||++....               ...||+|..+.. .....+.+.+|++++++++|||++++
T Consensus         3 ~~~~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~   82 (295)
T cd05097           3 PRQQLRLKEKLGEGQFGEVHLCEAEGLAEFLGEGAPEFDGQPVLVAVKMLRADVTKTARNDFLKEIKIMSRLKNPNIIRL   82 (295)
T ss_pred             chHhCeehhccCCCCCceEEecccccchhhccccCcccCCCceEEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCcCeE
Confidence            45689999999999999999987532               235899988654 34445679999999999999999999


Q ss_pred             eeEEEECCEEEEEEecCCCCCC----------------------CHHHHHHHHHHHH-------------hccCCCcEEE
Q 047066          166 LGCCLETEVPLLVNEFVKLPTI----------------------SWEVRIRIAAETA-------------EDIKSINILL  210 (256)
Q Consensus       166 ~~~~~~~~~~~lv~e~~~~~~l----------------------~~~~~~~~~~~i~-------------rdlk~~NiLi  210 (256)
                      ++++...+..+++|||+.+++|                      ++...+.++.+++             +||||+||++
T Consensus        83 ~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~~i~H~dlkp~Nill  162 (295)
T cd05097          83 LGVCVSDDPLCMITEYMENGDLNQFLSQREIESTFTHANNIPSVSIANLLYMAVQIASGMKYLASLNFVHRDLATRNCLV  162 (295)
T ss_pred             EEEEcCCCccEEEEecCCCCcHHHHHHhccccccccccccCCcccHHHHHHHHHHHHHHHHHHHhcCeeccccChhhEEE
Confidence            9999999999999999998765                      3333344555544             6999999999


Q ss_pred             cCCCcEEEEecCCceecCCCCcee-eeeeeecccc----cccccCCCCCCC
Q 047066          211 DDNYTTKVCDFGASKLVPIDETQL-STMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       211 ~~~~~~ki~DFGla~~~~~~~~~~-~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      ++++.+||+|||+++.+....... .....+++.|    ....+.++.++|
T Consensus       163 ~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~D  213 (295)
T cd05097         163 GNHYTIKIADFGMSRNLYSGDYYRIQGRAVLPIRWMAWESILLGKFTTASD  213 (295)
T ss_pred             cCCCcEEecccccccccccCcceeccCcCcCceeecChhhhccCCcCchhh
Confidence            999999999999998764332211 1222345566    445566777776

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including

>cd05034 PTKc_Src_like Catalytic domain of Src kinase-like Protein Tyrosine Kinases

Probab=99.84  E-value=3e-20  Score=153.35  Aligned_cols=157  Identities=22%  Similarity=0.403  Sum_probs=120.6

Q ss_pred             HHhhcCCCcccceeeeeCceEEEEEEECCCcEEEEEEecccChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEE
Q 047066           99 LKIATNNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLV  178 (256)
Q Consensus        99 ~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv  178 (256)
                      |+++.++|++.+.||+|+||.||++..+++..+++|.+..... ...++.+|+.+++.++|+|++++++++......+++
T Consensus         1 ~~~~~~~~~i~~~ig~g~~~~v~~~~~~~~~~~~vK~~~~~~~-~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v   79 (261)
T cd05034           1 WEIPRESLKLERKLGAGQFGEVWMGTWNGTTKVAVKTLKPGTM-SPEAFLQEAQIMKKLRHDKLVQLYAVCSEEEPIYIV   79 (261)
T ss_pred             CccchhheeeeeeeccCcceEEEEEEEcCCceEEEEEecCCcc-CHHHHHHHHHHHhhCCCCCEeeeeeeeecCCceEEE
Confidence            3467789999999999999999999987788899998865432 346788999999999999999999999988899999


Q ss_pred             EecCCCCCC------------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCce
Q 047066          179 NEFVKLPTI------------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQ  233 (256)
Q Consensus       179 ~e~~~~~~l------------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~  233 (256)
                      |||+++++|            ++.....++.+++             +||+|+||++++++.+||+|||++..+..+...
T Consensus        80 ~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~i~~al~~lh~~~i~h~di~p~nili~~~~~~~l~d~g~~~~~~~~~~~  159 (261)
T cd05034          80 TEYMSKGSLLDFLKSGEGKKLRLPQLVDMAAQIAEGMAYLESRNYIHRDLAARNILVGENLVCKIADFGLARLIEDDEYT  159 (261)
T ss_pred             EeccCCCCHHHHHhccccCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCcchheEEEcCCCCEEECccccceeccchhhh
Confidence            999988665            3444445554443             699999999999999999999999876533222


Q ss_pred             eeeeeeecccc----cccccCCCCCCC
Q 047066          234 LSTMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       234 ~~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      ......++..|    ...++.+++++|
T Consensus       160 ~~~~~~~~~~y~~PE~~~~~~~~~~~D  186 (261)
T cd05034         160 AREGAKFPIKWTAPEAANYGRFTIKSD  186 (261)
T ss_pred             hhhccCCCccccCHHHhccCCcCchhH
Confidence            11222234456    444556676665

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-t

>cd05054 PTKc_VEGFR Catalytic domain of the Protein Tyrosine Kinases, Vascular Endothelial Growth Factor Receptors

Probab=99.84  E-value=1.8e-20  Score=160.90  Aligned_cols=158  Identities=25%  Similarity=0.400  Sum_probs=119.4

Q ss_pred             HHhhcCCCcccceeeeeCceEEEEEEEC------CCcEEEEEEecccC-hhHHHHHHHHHHHHHhC-CCCcccceeeEEE
Q 047066           99 LKIATNNYAYDRMIGRGGYGTVFLGSLS------DNKAIAIKKSRIVY-QSQIEQCINKVVVLSQI-NHRNVVGLLGCCL  170 (256)
Q Consensus        99 ~~~~~~~~~~~~~lg~G~~g~V~~~~~~------~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~  170 (256)
                      |.++.++|++.+.||+|+||.||+|...      +++.||+|+++... ....+.+..|+.++.++ +|+||++++++|.
T Consensus         2 ~~~~~~~~~i~~~lG~G~fg~Vy~a~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~E~~~~~~l~~h~niv~~~~~~~   81 (337)
T cd05054           2 WEFPRDRLKLGKPLGRGAFGKVIQASAFGIEKSASCRTVAVKMLKEGATASEYKALMTELKILIHIGHHLNVVNLLGACT   81 (337)
T ss_pred             cccCHHHhhhhcccccCcCceEEeccccccccccccceeeeeeccCCCCHHHHHHHHHHHHHHHhhccCcchhheeeeEe
Confidence            5677789999999999999999999632      24789999886433 33446788999999999 8999999999887


Q ss_pred             E-CCEEEEEEecCCCCCCC-------------------------------------------------------------
Q 047066          171 E-TEVPLLVNEFVKLPTIS-------------------------------------------------------------  188 (256)
Q Consensus       171 ~-~~~~~lv~e~~~~~~l~-------------------------------------------------------------  188 (256)
                      . ....++++||+++++|.                                                             
T Consensus        82 ~~~~~~~~v~ey~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (337)
T cd05054          82 KPGGPLMVIVEYCKFGNLSNYLRSKRECFSPYRNKSTRKREMKQKEGKKQRLDSVSSSQSSASSGFIEDKSLSDVEEDEE  161 (337)
T ss_pred             cCCCCEEEEEecCCCCCHHHHHHhccccccccccccccccccccccccccccccCCccccccccccccCcchhhcccchh
Confidence            5 45688999999886553                                                             


Q ss_pred             ----------HHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCcee-eeeeeecccc
Q 047066          189 ----------WEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQL-STMVQGTLGY  244 (256)
Q Consensus       189 ----------~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~-~~~~~Gt~~y  244 (256)
                                +.....++.+++             |||||+|||+++++.+||+|||+++.+....... .....+++.|
T Consensus       162 ~~~~~~~~l~~~~~~~~~~qi~~aL~~lH~~~ivHrDikp~Nill~~~~~vkL~DfG~a~~~~~~~~~~~~~~~~~~~~y  241 (337)
T cd05054         162 GDELYKEPLTLEDLISYSFQVARGMEFLASRKCIHRDLAARNILLSENNVVKICDFGLARDIYKDPDYVRKGDARLPLKW  241 (337)
T ss_pred             hhHHhhcCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCcceEEEeCCCcEEEeccccchhcccCcchhhccCCCCCccc
Confidence                      333344444544             6999999999999999999999998764332221 1223355667


Q ss_pred             ----cccccCCCCCCC
Q 047066          245 ----YLHTSQGTLNKE  256 (256)
Q Consensus       245 ----~~~~~~~t~ksD  256 (256)
                          ++.+..++.++|
T Consensus       242 ~aPE~~~~~~~~~~~D  257 (337)
T cd05054         242 MAPESIFDKVYTTQSD  257 (337)
T ss_pred             cCcHHhcCCCCCcccc
Confidence                466677888887

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor (VEGFR) subfamily; catalytic (c) domain. The VEGFR subfamily consists of VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to recepto

>cd05052 PTKc_Abl Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

Probab=99.84  E-value=2.8e-20  Score=153.93  Aligned_cols=155  Identities=23%  Similarity=0.392  Sum_probs=119.8

Q ss_pred             hhcCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEE
Q 047066          101 IATNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVN  179 (256)
Q Consensus       101 ~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~  179 (256)
                      +...+|.+.+.||+|++|.||+|..+ .++.+++|...... .....+.+|+.+++.++|||++++++++...+..+++|
T Consensus         3 ~~~~~~~~~~~ig~g~~~~v~~~~~~~~~~~~~~K~~~~~~-~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~   81 (263)
T cd05052           3 MERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDT-MEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIIT   81 (263)
T ss_pred             CchHHeEEeeecCCcccceEEEEEEecCCceEEEEEecCCc-hHHHHHHHHHHHHHhCCCCChhheEEEEcCCCCcEEEE
Confidence            44567888899999999999999865 58889999876433 34567899999999999999999999999999999999


Q ss_pred             ecCCCCCC------------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCcee
Q 047066          180 EFVKLPTI------------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQL  234 (256)
Q Consensus       180 e~~~~~~l------------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~  234 (256)
                      ||+++++|            ++...+.++.|++             +||||+||++++++.+||+|||++..........
T Consensus        82 e~~~~~~L~~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lH~~~i~H~dlkp~nil~~~~~~~kl~df~~~~~~~~~~~~~  161 (263)
T cd05052          82 EFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTA  161 (263)
T ss_pred             EeCCCCcHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhCCEeecccCcceEEEcCCCcEEeCCCccccccccceeec
Confidence            99987654            3444455555554             6999999999999999999999998765433222


Q ss_pred             eeeeeecccc----cccccCCCCCCC
Q 047066          235 STMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       235 ~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      .....+++.|    ...++.++.++|
T Consensus       162 ~~~~~~~~~y~aPE~~~~~~~~~~~D  187 (263)
T cd05052         162 HAGAKFPIKWTAPESLAYNKFSIKSD  187 (263)
T ss_pred             cCCCCCccccCCHHHhccCCCCchhH
Confidence            2222245566    455667777776

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays

>cd05103 PTKc_VEGFR2 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 2

Probab=99.84  E-value=2.5e-20  Score=160.42  Aligned_cols=158  Identities=24%  Similarity=0.389  Sum_probs=115.9

Q ss_pred             HHhhcCCCcccceeeeeCceEEEEEEE------CCCcEEEEEEecccC-hhHHHHHHHHHHHHHhC-CCCcccceeeEEE
Q 047066           99 LKIATNNYAYDRMIGRGGYGTVFLGSL------SDNKAIAIKKSRIVY-QSQIEQCINKVVVLSQI-NHRNVVGLLGCCL  170 (256)
Q Consensus        99 ~~~~~~~~~~~~~lg~G~~g~V~~~~~------~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~  170 (256)
                      |..+.++|++.+.||+|+||.||+|..      .+++.||+|.++... ....+.+.+|+.++.++ +||||+++++++.
T Consensus         2 ~~~~~~~~~~~~~lG~G~fg~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~~~~~~~   81 (343)
T cd05103           2 WEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACT   81 (343)
T ss_pred             cccchhHhcccccccCCccceEEEEeeccCCccccceeEEEEEeccCCChHHHHHHHHHHHHHHhccCCccHhhhcceee
Confidence            456678899999999999999999973      246789999986533 33456788999999999 7899999999887


Q ss_pred             E-CCEEEEEEecCCCCCCCHH-----------------------------------------------------------
Q 047066          171 E-TEVPLLVNEFVKLPTISWE-----------------------------------------------------------  190 (256)
Q Consensus       171 ~-~~~~~lv~e~~~~~~l~~~-----------------------------------------------------------  190 (256)
                      . ....+++|||+++|+|...                                                           
T Consensus        82 ~~~~~~~lv~ey~~~g~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (343)
T cd05103          82 KPGGPLMVIVEFCKFGNLSNYLRSKRGEFVPYKTKDARFRQGKSGYGDISEDLKRRLDSITSSQSSASSGFVEEKSLSDV  161 (343)
T ss_pred             cCCCceEEEEeccCCCcHHHHHHhcCCccccccccccccccccccccchhhhhhhhccccccccccccccccCCCccccc
Confidence            5 4567899999998776322                                                           


Q ss_pred             ------------------HHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCcee-eeee
Q 047066          191 ------------------VRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQL-STMV  238 (256)
Q Consensus       191 ------------------~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~-~~~~  238 (256)
                                        ....++.|++             +||||+|||+++++.+||+|||+++....+.... ....
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~i~H~dikp~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~  241 (343)
T cd05103         162 EEEEAEQEDLYKKVLTLEDLICYSFQVAKGMEFLASRKCIHRDLAARNILLSENNVVKICDFGLARDIYKDPDYVRKGDA  241 (343)
T ss_pred             hhhhhhhhhhhhccCCHHHHHHHHHHHHHHHHHHHhCCeecCCCccCeEEEcCCCcEEEEecccccccccCcchhhcCCC
Confidence                              2223334443             7999999999999999999999998753322211 1112


Q ss_pred             eecccc----cccccCCCCCCC
Q 047066          239 QGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       239 ~Gt~~y----~~~~~~~t~ksD  256 (256)
                      .+++.|    .+.+..++.++|
T Consensus       242 ~~~~~y~aPE~~~~~~~~~~~D  263 (343)
T cd05103         242 RLPLKWMAPETIFDRVYTIQSD  263 (343)
T ss_pred             CCCcceECcHHhcCCCCCchhh
Confidence            244556    344566677766

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR2 (or Flk1) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. The carboxyl terminus of VEGFR2 plays an important role in its autophosp

>cd05059 PTKc_Tec_like Catalytic domain of Tec-like Protein Tyrosine Kinases

Probab=99.83  E-value=2.9e-20  Score=153.23  Aligned_cols=152  Identities=22%  Similarity=0.355  Sum_probs=115.3

Q ss_pred             CCCcccceeeeeCceEEEEEEECCCcEEEEEEecccChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEecCC
Q 047066          104 NNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEFVK  183 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~  183 (256)
                      .+|++.+.||+|+||.||++.++++..+++|....... ....+.+|+.+++.++||||+++++++...+..+++|||++
T Consensus         4 ~~~~~~~~lg~G~~~~v~~~~~~~~~~~~iK~~~~~~~-~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~   82 (256)
T cd05059           4 SELTFLKELGSGQFGVVHLGKWRGKIDVAIKMIREGAM-SEDDFIEEAKVMMKLSHPNLVQLYGVCTKQRPIFIVTEYMA   82 (256)
T ss_pred             HHcchhhhhccCCCceEEEeEecCCccEEEEEeccCCC-CHHHHHHHHHHHHhCCCCCEEEEEEEEcCCCceEEEEecCC
Confidence            45788899999999999999987777899998754332 23568889999999999999999999999999999999998


Q ss_pred             CCCC-----------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceeeeeee
Q 047066          184 LPTI-----------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQ  239 (256)
Q Consensus       184 ~~~l-----------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~~~~  239 (256)
                      +++|           ++.....++.+++             +||+|+||++++++.+||+|||+++....+.........
T Consensus        83 ~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dl~p~ni~i~~~~~~kl~dfg~~~~~~~~~~~~~~~~~  162 (256)
T cd05059          83 NGCLLNYLRERKGKLGTEWLLDMCSDVCEAMEYLESNGFIHRDLAARNCLVGEDNVVKVSDFGLARYVLDDQYTSSQGTK  162 (256)
T ss_pred             CCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHCCcccccccHhhEEECCCCcEEECCcccceecccccccccCCCC
Confidence            8654           3444455555544             699999999999999999999999876433221111111


Q ss_pred             ecccc----cccccCCCCCCC
Q 047066          240 GTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       240 Gt~~y----~~~~~~~t~ksD  256 (256)
                      ++..|    ...++.++.++|
T Consensus       163 ~~~~y~~Pe~~~~~~~~~~~D  183 (256)
T cd05059         163 FPVKWAPPEVFDYSRFSSKSD  183 (256)
T ss_pred             CCccccCHHHhccCCCCchhh
Confidence            33345    445566777776

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows

>cd05049 PTKc_Trk Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases

Probab=99.83  E-value=3.7e-20  Score=154.37  Aligned_cols=154  Identities=21%  Similarity=0.381  Sum_probs=118.9

Q ss_pred             cCCCcccceeeeeCceEEEEEEECC------CcEEEEEEecccChh-HHHHHHHHHHHHHhCCCCcccceeeEEEECCEE
Q 047066          103 TNNYAYDRMIGRGGYGTVFLGSLSD------NKAIAIKKSRIVYQS-QIEQCINKVVVLSQINHRNVVGLLGCCLETEVP  175 (256)
Q Consensus       103 ~~~~~~~~~lg~G~~g~V~~~~~~~------~~~vavK~~~~~~~~-~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~  175 (256)
                      .++|.+.+.||+|+||.||+|...+      +..+|+|.+...... ..+.+.+|+++++.++|||++++++++...+..
T Consensus         4 ~~~~~~~~~lg~g~~~~v~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~   83 (280)
T cd05049           4 RDTIVLKRELGEGAFGKVFLGECYHLEPENDKELVAVKTLKETASNDARKDFEREAELLTNFQHENIVKFYGVCTEGDPP   83 (280)
T ss_pred             hHHhhHHhhccccCCceEeeeeeccccCcCCcceEEEEeecccCCHHHHHHHHHHHHHHHhcCCCCchheeeEEecCCCe
Confidence            4578888999999999999998532      478999988755433 457899999999999999999999999999999


Q ss_pred             EEEEecCCCCCCC------------------------HHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEE
Q 047066          176 LLVNEFVKLPTIS------------------------WEVRIRIAAETA-------------EDIKSINILLDDNYTTKV  218 (256)
Q Consensus       176 ~lv~e~~~~~~l~------------------------~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki  218 (256)
                      +++|||+++++|.                        +.....++.+++             +||||+||+++.++.+||
T Consensus        84 ~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~~~i~h~dlkp~nili~~~~~~kl  163 (280)
T cd05049          84 IMVFEYMEHGDLNKFLRSHGPDAAFLKSPDSPMGELTLSQLLQIAVQIASGMVYLASQHFVHRDLATRNCLVGYDLVVKI  163 (280)
T ss_pred             EEEEecCCCCCHHHHHHhcCCchhhhcccccccccccHHHHHHHHHHHHHHHHHHhhCCeeccccccceEEEcCCCeEEE
Confidence            9999999887653                        223334444433             699999999999999999


Q ss_pred             EecCCceecCCCCce-eeeeeeecccc----cccccCCCCCCC
Q 047066          219 CDFGASKLVPIDETQ-LSTMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       219 ~DFGla~~~~~~~~~-~~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      +|||+++.+...... ......+++.|    ++.++.+++++|
T Consensus       164 ~d~g~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~D  206 (280)
T cd05049         164 GDFGMSRDVYTTDYYRVGGHTMLPIRWMPPESIMYRKFTTESD  206 (280)
T ss_pred             CCcccceecccCcceecCCCCcccceecChhhhccCCcchhhh
Confidence            999999876433221 12223356677    556677888877

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalyt

>cd05033 PTKc_EphR Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases

Probab=99.83  E-value=7.1e-20  Score=151.69  Aligned_cols=154  Identities=20%  Similarity=0.321  Sum_probs=117.4

Q ss_pred             cCCCcccceeeeeCceEEEEEEECC----CcEEEEEEecccC-hhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEE
Q 047066          103 TNNYAYDRMIGRGGYGTVFLGSLSD----NKAIAIKKSRIVY-QSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLL  177 (256)
Q Consensus       103 ~~~~~~~~~lg~G~~g~V~~~~~~~----~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~l  177 (256)
                      .++|++.+.||+|+||.||+|.++.    ...+++|.++... ......+.+|+.+++.++||||+++++.+...+..++
T Consensus         3 ~~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~i   82 (266)
T cd05033           3 PSYVTIEKVIGGGEFGEVCRGRLKLPGKKEIDVAIKTLKAGSSDKQRLDFLTEASIMGQFDHPNIIRLEGVVTKSRPVMI   82 (266)
T ss_pred             hHHceeeeEecCCccceEEEEEEccCCCCcceEEEEEcCCCCChHHHHHHHHHHHHHHhCCCCCcceEeEEEecCCceEE
Confidence            3578899999999999999998742    4578999876543 3445678999999999999999999999999999999


Q ss_pred             EEecCCCCCC-----------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCce
Q 047066          178 VNEFVKLPTI-----------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQ  233 (256)
Q Consensus       178 v~e~~~~~~l-----------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~  233 (256)
                      +|||+++++|           ++.....++.+++             +||+|+||++++++.+||+|||+++.+......
T Consensus        83 v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lh~~~i~H~di~p~nili~~~~~~~l~dfg~~~~~~~~~~~  162 (266)
T cd05033          83 ITEYMENGSLDKFLRENDGKFTVGQLVGMLRGIASGMKYLSEMNYVHRDLAARNILVNSNLVCKVSDFGLSRRLEDSEAT  162 (266)
T ss_pred             EEEcCCCCCHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCcceEEEcCCCCEEECccchhhcccccccc
Confidence            9999988654           4444455555444             599999999999999999999999987522222


Q ss_pred             e-eeeeeecccc----cccccCCCCCCC
Q 047066          234 L-STMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       234 ~-~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      . .....+++.|    ...++.++.++|
T Consensus       163 ~~~~~~~~~~~y~~Pe~~~~~~~~~~~D  190 (266)
T cd05033         163 YTTKGGKIPIRWTAPEAIAYRKFTSASD  190 (266)
T ss_pred             eeccCCCCCccccChhhhccCCCccccc
Confidence            1 1122244556    444566777776

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment

>PHA03211 serine/threonine kinase US3; Provisional

Probab=99.83  E-value=4.1e-20  Score=164.30  Aligned_cols=147  Identities=20%  Similarity=0.237  Sum_probs=118.3

Q ss_pred             CCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEecC
Q 047066          104 NNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEFV  182 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~  182 (256)
                      ..|.+.+.||+|+||.||++... .++.||+|...      ...+.+|+.++++++|+||+++++++...+..+++||++
T Consensus       169 ~gy~i~~~Lg~G~~G~Vy~a~~~~~~~~vavK~~~------~~~~~~E~~iL~~L~HpnIv~l~~~~~~~~~~~lv~e~~  242 (461)
T PHA03211        169 LGFAIHRALTPGSEGCVFESSHPDYPQRVVVKAGW------YASSVHEARLLRRLSHPAVLALLDVRVVGGLTCLVLPKY  242 (461)
T ss_pred             CCeEEEEEEccCCCeEEEEEEECCCCCEEEEeccc------ccCHHHHHHHHHHCCCCCCCcEEEEEEECCEEEEEEEcc
Confidence            46899999999999999999975 57889999532      234568999999999999999999999999999999988


Q ss_pred             CC----------CCCCHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCce-eeeee
Q 047066          183 KL----------PTISWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQ-LSTMV  238 (256)
Q Consensus       183 ~~----------~~l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~-~~~~~  238 (256)
                      .+          +.+++...+.++.|++             |||||+|||++.++.+||+|||+++.+...... .....
T Consensus       243 ~~~L~~~l~~~~~~l~~~~~~~i~~qi~~aL~yLH~~gIvHrDLKP~NILl~~~~~vkL~DFGla~~~~~~~~~~~~~~~  322 (461)
T PHA03211        243 RSDLYTYLGARLRPLGLAQVTAVARQLLSAIDYIHGEGIIHRDIKTENVLVNGPEDICLGDFGAACFARGSWSTPFHYGI  322 (461)
T ss_pred             CCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCEEECcCCHHHEEECCCCCEEEcccCCceeccccccccccccc
Confidence            54          2356666677777765             699999999999999999999999876433221 22345


Q ss_pred             eecccc----cccccCCCCCCC
Q 047066          239 QGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       239 ~Gt~~y----~~~~~~~t~ksD  256 (256)
                      .||+.|    ++.+..++.++|
T Consensus       323 ~GT~~Y~APE~~~~~~~~~~sD  344 (461)
T PHA03211        323 AGTVDTNAPEVLAGDPYTPSVD  344 (461)
T ss_pred             CCCcCCcCHHHHcCCCCCchHH
Confidence            699999    566677888877

>cd06656 STKc_PAK3 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3

Probab=99.83  E-value=5.7e-20  Score=154.98  Aligned_cols=152  Identities=24%  Similarity=0.308  Sum_probs=120.6

Q ss_pred             CCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEecC
Q 047066          104 NNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEFV  182 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~  182 (256)
                      .+|++.+.||+|++|.||++... +++.+|+|.+........+.+.+|+.+++.++|||++++++++...+..+++|||+
T Consensus        19 ~~y~~~~~lg~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv~e~~   98 (297)
T cd06656          19 KKYTRFEKIGQGASGTVYTAIDIATGQEVAIKQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEYL   98 (297)
T ss_pred             hhceeeeeeccCCCeEEEEEEECCCCCEEEEEEEecCccchHHHHHHHHHHHHhCCCCCEeeEEEEEecCCEEEEeeccc
Confidence            67889999999999999999964 78999999887655445577889999999999999999999999999999999999


Q ss_pred             CCCCCC---------HHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceeeeeeee
Q 047066          183 KLPTIS---------WEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQG  240 (256)
Q Consensus       183 ~~~~l~---------~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~~~~G  240 (256)
                      ++++|.         +.....++.+++             +||+|+||+++.++.+||+|||++......... .....|
T Consensus        99 ~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~LH~~~i~H~dL~p~Nili~~~~~~~l~Dfg~~~~~~~~~~~-~~~~~~  177 (297)
T cd06656          99 AGGSLTDVVTETCMDEGQIAAVCRECLQALDFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSK-RSTMVG  177 (297)
T ss_pred             CCCCHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCCEEECcCccceEccCCccC-cCcccC
Confidence            987763         334444444443             699999999999999999999999876543322 223357


Q ss_pred             cccc----cccccCCCCCCC
Q 047066          241 TLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       241 t~~y----~~~~~~~t~ksD  256 (256)
                      ++.|    ...+..++.++|
T Consensus       178 ~~~y~aPE~~~~~~~~~~~D  197 (297)
T cd06656         178 TPYWMAPEVVTRKAYGPKVD  197 (297)
T ss_pred             CccccCHHHHcCCCCCcHHH
Confidence            7777    445566677665

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd05061 PTKc_InsR Catalytic domain of the Protein Tyrosine Kinase, Insulin Receptor

Probab=99.83  E-value=3.2e-20  Score=155.73  Aligned_cols=158  Identities=20%  Similarity=0.295  Sum_probs=118.2

Q ss_pred             HHhhcCCCcccceeeeeCceEEEEEEEC------CCcEEEEEEecccC-hhHHHHHHHHHHHHHhCCCCcccceeeEEEE
Q 047066           99 LKIATNNYAYDRMIGRGGYGTVFLGSLS------DNKAIAIKKSRIVY-QSQIEQCINKVVVLSQINHRNVVGLLGCCLE  171 (256)
Q Consensus        99 ~~~~~~~~~~~~~lg~G~~g~V~~~~~~------~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~  171 (256)
                      |++..++|++.+.||+|+||.||+|..+      .+..+|+|.+.... ......+.+|+..++.++||||+++++++..
T Consensus         1 ~~~~~~~~~i~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~   80 (288)
T cd05061           1 WEVSREKITLLRELGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESASLRERIEFLNEASVMKGFTCHHVVRLLGVVSK   80 (288)
T ss_pred             CcccHHHceeeeeecCCCCcEEEEEEEeccCCCCcceEEEEEECCCcCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEcC
Confidence            4566788999999999999999998743      24579999876443 2334568889999999999999999999999


Q ss_pred             CCEEEEEEecCCCCCCCHHH--------------------HHHHHHHHH-------------hccCCCcEEEcCCCcEEE
Q 047066          172 TEVPLLVNEFVKLPTISWEV--------------------RIRIAAETA-------------EDIKSINILLDDNYTTKV  218 (256)
Q Consensus       172 ~~~~~lv~e~~~~~~l~~~~--------------------~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki  218 (256)
                      .+..+++|||+++++|....                    ...++.+++             +||||+|||+++++.+||
T Consensus        81 ~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~i~H~dikp~nili~~~~~~~L  160 (288)
T cd05061          81 GQPTLVVMELMAHGDLKSYLRSLRPEAENNPGRPPPTLQEMIQMAAEIADGMAYLNAKKFVHRDLAARNCMVAHDFTVKI  160 (288)
T ss_pred             CCCcEEEEeCCCCCCHHHHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCcCCCCChheEEEcCCCcEEE
Confidence            89999999999988774333                    233444443             699999999999999999


Q ss_pred             EecCCceecCCCCceee-eeeeecccc----cccccCCCCCCC
Q 047066          219 CDFGASKLVPIDETQLS-TMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       219 ~DFGla~~~~~~~~~~~-~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      +|||+++.+........ ....++..|    .+.++.++.++|
T Consensus       161 ~Dfg~~~~~~~~~~~~~~~~~~~~~~y~~pE~~~~~~~~~~~D  203 (288)
T cd05061         161 GDFGMTRDIYETDYYRKGGKGLLPVRWMAPESLKDGVFTTSSD  203 (288)
T ss_pred             CcCCccccccccccccccCCCcccccccCHHHhccCCCChHhH
Confidence            99999986543322111 112245556    445566777766

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein meta

>cd05093 PTKc_TrkB Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B

Probab=99.83  E-value=5.7e-20  Score=154.20  Aligned_cols=154  Identities=22%  Similarity=0.360  Sum_probs=119.5

Q ss_pred             cCCCcccceeeeeCceEEEEEEEC------CCcEEEEEEecccChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEE
Q 047066          103 TNNYAYDRMIGRGGYGTVFLGSLS------DNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPL  176 (256)
Q Consensus       103 ~~~~~~~~~lg~G~~g~V~~~~~~------~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~  176 (256)
                      ..+|.+.+.||+|+||+||++...      ++..+++|.+..........+.+|++++++++|||++++++++...+..+
T Consensus         4 ~~~~~~~~~lg~G~~~~v~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~   83 (288)
T cd05093           4 RHNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVEGDPLI   83 (288)
T ss_pred             hHHeeeccccCCcCCeeEEeeEeccCCCCCcceEEEEEecCCcCHHHHHHHHHHHHHHHhCCCCCcceEEEEEecCCccE
Confidence            467889999999999999999742      34568999887665556678999999999999999999999999999999


Q ss_pred             EEEecCCCCCC-----------------------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEe
Q 047066          177 LVNEFVKLPTI-----------------------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCD  220 (256)
Q Consensus       177 lv~e~~~~~~l-----------------------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~D  220 (256)
                      +++||+++++|                       ++.....++.+++             +||||+||++++++.+||+|
T Consensus        84 lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ql~~aL~~lH~~~i~H~dlkp~Nili~~~~~~kl~d  163 (288)
T cd05093          84 MVFEYMKHGDLNKFLRAHGPDAVLMAEGNRPAELTQSQMLHIAQQIAAGMVYLASQHFVHRDLATRNCLVGENLLVKIGD  163 (288)
T ss_pred             EEEEcCCCCCHHHHHHHcCCccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHhCCeeecccCcceEEEccCCcEEecc
Confidence            99999987664                       4444455555544             69999999999999999999


Q ss_pred             cCCceecCCCCcee-eeeeeecccc----cccccCCCCCCC
Q 047066          221 FGASKLVPIDETQL-STMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       221 FGla~~~~~~~~~~-~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      ||+++......... .....+++.|    .+.+..++.++|
T Consensus       164 fg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sD  204 (288)
T cd05093         164 FGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESD  204 (288)
T ss_pred             CCccccccCCceeecCCCCCccccccCHHHhccCCCCchhh
Confidence            99998764332211 1223356667    455566777776

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly

>cd05062 PTKc_IGF-1R Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor

Probab=99.83  E-value=3.9e-20  Score=154.20  Aligned_cols=157  Identities=21%  Similarity=0.320  Sum_probs=118.2

Q ss_pred             HhhcCCCcccceeeeeCceEEEEEEEC------CCcEEEEEEecccC-hhHHHHHHHHHHHHHhCCCCcccceeeEEEEC
Q 047066          100 KIATNNYAYDRMIGRGGYGTVFLGSLS------DNKAIAIKKSRIVY-QSQIEQCINKVVVLSQINHRNVVGLLGCCLET  172 (256)
Q Consensus       100 ~~~~~~~~~~~~lg~G~~g~V~~~~~~------~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~  172 (256)
                      .+..++|++.+.||+|+||.||+|..+      .+..+|+|.+.... .....++.+|+.+++.++||||+++++++...
T Consensus         2 ~~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~l~~~~iv~~~~~~~~~   81 (277)
T cd05062           2 EVAREKITMSRELGQGSFGMVYEGIAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGVVSQG   81 (277)
T ss_pred             cccHHHceeeeeeccccCCeEEEEEeccCCCCCceeEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEcCC
Confidence            456678999999999999999998753      24679999875432 33446788999999999999999999999998


Q ss_pred             CEEEEEEecCCCCCCCH--------------------HHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEE
Q 047066          173 EVPLLVNEFVKLPTISW--------------------EVRIRIAAETA-------------EDIKSINILLDDNYTTKVC  219 (256)
Q Consensus       173 ~~~~lv~e~~~~~~l~~--------------------~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~  219 (256)
                      ...+++|||+.+++|..                    ...+.++.+++             +||||+||++++++.+||+
T Consensus        82 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~~vH~dlkp~Nil~~~~~~~~l~  161 (277)
T cd05062          82 QPTLVIMELMTRGDLKSYLRSLRPEMENNPVQAPPSLKKMIQMAGEIADGMAYLNANKFVHRDLAARNCMVAEDFTVKIG  161 (277)
T ss_pred             CCeEEEEecCCCCCHHHHHHHcCccccccccccCCCHHHHHHHHHHHHHHHHHHHHCCcccCCcchheEEEcCCCCEEEC
Confidence            99999999999877632                    22233444443             6999999999999999999


Q ss_pred             ecCCceecCCCCceee-eeeeecccc----cccccCCCCCCC
Q 047066          220 DFGASKLVPIDETQLS-TMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       220 DFGla~~~~~~~~~~~-~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      |||+++.......... ....+++.|    .+.++.++.++|
T Consensus       162 dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~D  203 (277)
T cd05062         162 DFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSD  203 (277)
T ss_pred             CCCCccccCCcceeecCCCCccCHhhcChhHhhcCCcCchhH
Confidence            9999986643322211 122356667    445566777776

Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, wh

>cd05073 PTKc_Hck Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase

Probab=99.83  E-value=6.6e-20  Score=151.46  Aligned_cols=156  Identities=18%  Similarity=0.360  Sum_probs=119.6

Q ss_pred             HHhhcCCCcccceeeeeCceEEEEEEECCCcEEEEEEecccChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEE
Q 047066           99 LKIATNNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLV  178 (256)
Q Consensus        99 ~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv  178 (256)
                      |++..++|++.+.||+|+||.||++...++..+++|.+.... ...+.+.+|+.+++.++|+|++++++.+.. ...+++
T Consensus         1 ~~~~~~~~~~~~~lg~g~~~~vy~~~~~~~~~~~iK~~~~~~-~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~-~~~~~v   78 (260)
T cd05073           1 WEIPRESLKLEKKLGAGQFGEVWMATYNKHTKVAVKTMKPGS-MSVEAFLAEANVMKTLQHDKLVKLHAVVTK-EPIYII   78 (260)
T ss_pred             CcccccceeEEeEecCccceEEEEEEecCCccEEEEecCCCh-hHHHHHHHHHHHHHhcCCCCcceEEEEEcC-CCeEEE
Confidence            456778999999999999999999997777789999876432 334678899999999999999999999887 778999


Q ss_pred             EecCCCCCC------------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCce
Q 047066          179 NEFVKLPTI------------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQ  233 (256)
Q Consensus       179 ~e~~~~~~l------------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~  233 (256)
                      |||+++++|            ++.....++.+++             +||+|+||+++.++.+||+|||++..+......
T Consensus        79 ~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~aL~~lH~~~i~H~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~~  158 (260)
T cd05073          79 TEFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIEQRNYIHRDLRAANILVSASLVCKIADFGLARVIEDNEYT  158 (260)
T ss_pred             EEeCCCCcHHHHHHhCCccccCHHHHHHHHHHHHHHHHHHHhCCccccccCcceEEEcCCCcEEECCCcceeeccCCCcc
Confidence            999988765            2333444444444             699999999999999999999999876543322


Q ss_pred             eeeeeeecccc----cccccCCCCCCC
Q 047066          234 LSTMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       234 ~~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      ......++..|    ++..+.++.++|
T Consensus       159 ~~~~~~~~~~y~~PE~~~~~~~~~~~D  185 (260)
T cd05073         159 AREGAKFPIKWTAPEAINFGSFTIKSD  185 (260)
T ss_pred             cccCCcccccccCHhHhccCCcCcccc
Confidence            22222345556    455566777776

Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pa

>cd05090 PTKc_Ror1 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1

Probab=99.83  E-value=5.5e-20  Score=153.78  Aligned_cols=153  Identities=17%  Similarity=0.295  Sum_probs=116.3

Q ss_pred             CCCcccceeeeeCceEEEEEEE-----CCCcEEEEEEecccC-hhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEE
Q 047066          104 NNYAYDRMIGRGGYGTVFLGSL-----SDNKAIAIKKSRIVY-QSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLL  177 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~V~~~~~-----~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~l  177 (256)
                      ++|++.+.||+|+||.||+|..     .++..+++|.+.... ......+.+|+.+++.++||||+++++++...+..++
T Consensus         5 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~l   84 (283)
T cd05090           5 SAVRFMEELGECAFGKIYKGHLYLPGMDHAQLVAIKTLKDINNPQQWGEFQQEASLMAELHHPNIVCLLGVVTQEQPVCM   84 (283)
T ss_pred             hhceeeeeccccCCcceEEEEEecCCCCCcceEEEEeccCCCCHHHHHHHHHHHHHHhhCCCCCeeeEEEEEecCCceEE
Confidence            5688889999999999999974     245789999886543 3444678899999999999999999999999999999


Q ss_pred             EEecCCCCCCCH---------------------------HHHHHHHHHHH-------------hccCCCcEEEcCCCcEE
Q 047066          178 VNEFVKLPTISW---------------------------EVRIRIAAETA-------------EDIKSINILLDDNYTTK  217 (256)
Q Consensus       178 v~e~~~~~~l~~---------------------------~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~k  217 (256)
                      +|||+.+++|..                           ...+.++.+++             +||||+|||+++++.+|
T Consensus        85 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~~i~H~dlkp~nili~~~~~~k  164 (283)
T cd05090          85 LFEYLNQGDLHEFLIMRSPHSDVGCSSDEDGTVKSSLDHGDFLHIAIQIAAGMEYLSSHFFVHKDLAARNILIGEQLHVK  164 (283)
T ss_pred             EEEcCCCCcHHHHHHhcCCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHHhcCeehhccccceEEEcCCCcEE
Confidence            999998876532                           22333444443             69999999999999999


Q ss_pred             EEecCCceecCCCCcee-eeeeeecccc----cccccCCCCCCC
Q 047066          218 VCDFGASKLVPIDETQL-STMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       218 i~DFGla~~~~~~~~~~-~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      |+|||+++......... .....++..|    +..++.++.++|
T Consensus       165 l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~D  208 (283)
T cd05090         165 ISDLGLSREIYSADYYRVQPKSLLPIRWMPPEAIMYGKFSSDSD  208 (283)
T ss_pred             eccccccccccCCcceecccCCCccceecChHHhccCCCCchhh
Confidence            99999998764332211 1222355566    445566777776

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>KOG0599 consensus Phosphorylase kinase gamma subunit [Carbohydrate transport and metabolism]

Probab=99.83  E-value=2.9e-21  Score=154.30  Aligned_cols=139  Identities=26%  Similarity=0.318  Sum_probs=112.7

Q ss_pred             CCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC--------hhHHHHHHHHHHHHHhC-CCCcccceeeEEEECC
Q 047066          104 NNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY--------QSQIEQCINKVVVLSQI-NHRNVVGLLGCCLETE  173 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--------~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~  173 (256)
                      ..|...+.+|.|..+.|.+|..+ ++.++|+|++....        ....+.-.+|+.+|+++ .||+|+.+.+.++++.
T Consensus        17 ~~y~pkeilgrgvss~vrRci~k~t~~e~a~kii~~~at~~~~e~~~~~~EaT~~Ev~ILRqv~GHP~II~l~D~yes~s   96 (411)
T KOG0599|consen   17 AKYEPKEILGRGVSSVVRRCIHKETGKEFAVKIIDVTATTESGETPYEMREATRQEISILRQVMGHPYIIDLQDVYESDA   96 (411)
T ss_pred             hhcChHHHhcccchhhhhhhhhcccccceeEEEEEecccccCCccHHHHHHHHHHHHHHHHHhcCCCcEEEeeeeccCcc
Confidence            45777789999999999988864 78899999875321        12345678899999999 7999999999999999


Q ss_pred             EEEEEEecCCCCCC----------CHHHHHHHHH-------------HHHhccCCCcEEEcCCCcEEEEecCCceecCCC
Q 047066          174 VPLLVNEFVKLPTI----------SWEVRIRIAA-------------ETAEDIKSINILLDDNYTTKVCDFGASKLVPID  230 (256)
Q Consensus       174 ~~~lv~e~~~~~~l----------~~~~~~~~~~-------------~i~rdlk~~NiLi~~~~~~ki~DFGla~~~~~~  230 (256)
                      ..++|+|.|+.|.|          ++....+++.             .+||||||+|||+|++.++||+|||+|..+.+.
T Consensus        97 F~FlVFdl~prGELFDyLts~VtlSEK~tR~iMrqlfegVeylHa~~IVHRDLKpENILlddn~~i~isDFGFa~~l~~G  176 (411)
T KOG0599|consen   97 FVFLVFDLMPRGELFDYLTSKVTLSEKETRRIMRQLFEGVEYLHARNIVHRDLKPENILLDDNMNIKISDFGFACQLEPG  176 (411)
T ss_pred             hhhhhhhhcccchHHHHhhhheeecHHHHHHHHHHHHHHHHHHHHhhhhhcccChhheeeccccceEEeccceeeccCCc
Confidence            99999999998775          3444444443             456899999999999999999999999998655


Q ss_pred             Cceeeeeeeecccc
Q 047066          231 ETQLSTMVQGTLGY  244 (256)
Q Consensus       231 ~~~~~~~~~Gt~~y  244 (256)
                      +.  ...+||||+|
T Consensus       177 ek--LrelCGTPgY  188 (411)
T KOG0599|consen  177 EK--LRELCGTPGY  188 (411)
T ss_pred             hh--HHHhcCCCcc
Confidence            43  4568999999

>cd07875 STKc_JNK1 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1

Probab=99.83  E-value=9.4e-20  Score=158.00  Aligned_cols=152  Identities=22%  Similarity=0.274  Sum_probs=117.5

Q ss_pred             cCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEeccc--ChhHHHHHHHHHHHHHhCCCCcccceeeEEEEC------C
Q 047066          103 TNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIV--YQSQIEQCINKVVVLSQINHRNVVGLLGCCLET------E  173 (256)
Q Consensus       103 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~------~  173 (256)
                      .++|++.+.||+|+||.||++... .++.+|+|.+...  .......+.+|+.+++.++||||+++++++...      .
T Consensus        23 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~ii~~~~~~~~~~~~~~~~  102 (364)
T cd07875          23 LKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEFQ  102 (364)
T ss_pred             hcceeEEEEeecCCCeEEEEEEECCCCcEEEEEEeCccccCchhHHHHHHHHHHHHhcCCCCccccceeecccccccccC
Confidence            468999999999999999999865 6889999988643  233446788999999999999999999987643      3


Q ss_pred             EEEEEEecCCCCC-------CCHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCce
Q 047066          174 VPLLVNEFVKLPT-------ISWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQ  233 (256)
Q Consensus       174 ~~~lv~e~~~~~~-------l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~  233 (256)
                      ..++||||++++.       +++.....++.|++             |||||+|||++.++.+||+|||+++......  
T Consensus       103 ~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~~--  180 (364)
T cd07875         103 DVYIVMELMDANLCQVIQMELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSF--  180 (364)
T ss_pred             eEEEEEeCCCCCHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhCCeecCCCCHHHEEECCCCcEEEEeCCCccccCCCC--
Confidence            5799999998743       34444444554444             6999999999999999999999998754322  


Q ss_pred             eeeeeeecccc----cccccCCCCCCC
Q 047066          234 LSTMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       234 ~~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      ..+...||+.|    .+.+..++.++|
T Consensus       181 ~~~~~~~t~~y~aPE~~~~~~~~~~~D  207 (364)
T cd07875         181 MMTPYVVTRYYRAPEVILGMGYKENVD  207 (364)
T ss_pred             cccCCcccCCcCCHHHHhCCCCCchhh
Confidence            12334588888    556677788877

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>cd06646 STKc_MAP4K5 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 5

Probab=99.83  E-value=1.5e-19  Score=149.82  Aligned_cols=153  Identities=21%  Similarity=0.276  Sum_probs=118.3

Q ss_pred             cCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEec
Q 047066          103 TNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEF  181 (256)
Q Consensus       103 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~  181 (256)
                      .++|++.+.||+|+||.||+|... +++.+++|............+.+|+.+++.++||||+++++.+...+..+++|||
T Consensus         8 ~~~y~~~~~lg~g~~g~vy~~~~~~~~~~~aik~~~~~~~~~~~~~~~e~~~l~~~~h~~ii~~~~~~~~~~~~~iv~e~   87 (267)
T cd06646           8 QHDYELIQRVGSGTYGDVYKARNLHTGELAAVKIIKLEPGDDFSLIQQEIFMVKECKHCNIVAYFGSYLSREKLWICMEY   87 (267)
T ss_pred             hhhcchhheeecCCCeEEEEEEECCCCeEEEEEEEecCccchHHHHHHHHHHHHhcCCCCeeeeeEEEEeCCEEEEEEeC
Confidence            457899999999999999999964 6889999988655444556788999999999999999999999999999999999


Q ss_pred             CCCCCCCH----------HHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceeeeee
Q 047066          182 VKLPTISW----------EVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMV  238 (256)
Q Consensus       182 ~~~~~l~~----------~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~~~  238 (256)
                      +++++|..          .....++.|++             +|++|+||+++.++.+||+|||+++.+...... ....
T Consensus        88 ~~~~~L~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~nill~~~~~~~l~dfg~~~~~~~~~~~-~~~~  166 (267)
T cd06646          88 CGGGSLQDIYHVTGPLSELQIAYVCRETLQGLAYLHSKGKMHRDIKGANILLTDNGDVKLADFGVAAKITATIAK-RKSF  166 (267)
T ss_pred             CCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCCHHHEEECCCCCEEECcCccceeecccccc-cCcc
Confidence            99877633          33344444444             699999999999999999999999876432211 1223


Q ss_pred             eecccc----cc---cccCCCCCCC
Q 047066          239 QGTLGY----YL---HTSQGTLNKE  256 (256)
Q Consensus       239 ~Gt~~y----~~---~~~~~t~ksD  256 (256)
                      .|++.|    .+   ..+.++.++|
T Consensus       167 ~~~~~y~~PE~~~~~~~~~~~~~~D  191 (267)
T cd06646         167 IGTPYWMAPEVAAVEKNGGYNQLCD  191 (267)
T ss_pred             ccCccccCHhHcccccCCCCcchhh
Confidence            477777    22   2344566666

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd05108 PTKc_EGFR Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor

Probab=99.83  E-value=6.9e-20  Score=155.78  Aligned_cols=153  Identities=20%  Similarity=0.381  Sum_probs=115.2

Q ss_pred             cCCCcccceeeeeCceEEEEEEEC-CCc----EEEEEEecccC-hhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEE
Q 047066          103 TNNYAYDRMIGRGGYGTVFLGSLS-DNK----AIAIKKSRIVY-QSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPL  176 (256)
Q Consensus       103 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~----~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~  176 (256)
                      ..+|+..+.||+|+||.||+|.+. ++.    .||+|.+.... ....+.+.+|+.+++.++||||++++|+|... ..+
T Consensus         6 ~~~f~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~g~~~~~-~~~   84 (316)
T cd05108           6 ETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTS-TVQ   84 (316)
T ss_pred             hhhceeeeeeecCCCceEEEEEEecCCCccceeEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEcCC-Cce
Confidence            357899999999999999999864 333    48999886543 34557789999999999999999999999865 467


Q ss_pred             EEEecCCCCCC-----------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCc
Q 047066          177 LVNEFVKLPTI-----------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDET  232 (256)
Q Consensus       177 lv~e~~~~~~l-----------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~  232 (256)
                      +++||+.+|++           ++.....++.|++             +||||+|||+++++.+||+|||+++.+.....
T Consensus        85 ~v~e~~~~g~l~~~l~~~~~~~~~~~~~~~~~qi~~~L~~LH~~~iiH~dlkp~Nill~~~~~~kl~DfG~a~~~~~~~~  164 (316)
T cd05108          85 LITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEERRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGADEK  164 (316)
T ss_pred             eeeecCCCCCHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHhcCeeccccchhheEecCCCcEEEccccccccccCCCc
Confidence            89999988765           3334445555554             69999999999999999999999998754333


Q ss_pred             eee-eeeeecccc----cccccCCCCCCC
Q 047066          233 QLS-TMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       233 ~~~-~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      ... ....+++.|    ++....++.++|
T Consensus       165 ~~~~~~~~~~~~y~apE~~~~~~~~~~~D  193 (316)
T cd05108         165 EYHAEGGKVPIKWMALESILHRIYTHQSD  193 (316)
T ss_pred             ceeccCCccceeecChHHhccCCCCchhh
Confidence            221 112245566    455667777776

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphor

>cd05066 PTKc_EphR_A Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors

Probab=99.83  E-value=8.8e-20  Score=151.29  Aligned_cols=153  Identities=22%  Similarity=0.366  Sum_probs=116.1

Q ss_pred             CCCcccceeeeeCceEEEEEEEC-C---CcEEEEEEecccC-hhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEE
Q 047066          104 NNYAYDRMIGRGGYGTVFLGSLS-D---NKAIAIKKSRIVY-QSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLV  178 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~V~~~~~~-~---~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv  178 (256)
                      .+|++.+.||+|+||.||+|... +   +..+|+|.++... ....+.+.+|+.+++.++||||+++++++...+..+++
T Consensus         4 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv   83 (267)
T cd05066           4 SCIKIEKVIGAGEFGEVCSGRLKLPGKREIPVAIKTLKAGYTEKQRRDFLSEASIMGQFDHPNIIHLEGVVTKSKPVMIV   83 (267)
T ss_pred             HHeEeeeeecccCCCceEEEEEecCCCCceEEEEEECCCCCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEecCCccEEE
Confidence            57888899999999999999863 2   3378999876533 34457889999999999999999999999999999999


Q ss_pred             EecCCCCCC-----------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCcee
Q 047066          179 NEFVKLPTI-----------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQL  234 (256)
Q Consensus       179 ~e~~~~~~l-----------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~  234 (256)
                      |||+++++|           ++.....++.+++             +||||+|||++.++.+||+|||+++.+.......
T Consensus        84 ~e~~~~~~L~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~i~h~dlkp~nili~~~~~~~l~dfg~~~~~~~~~~~~  163 (267)
T cd05066          84 TEYMENGSLDAFLRKHDGQFTVIQLVGMLRGIASGMKYLSDMGYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEAA  163 (267)
T ss_pred             EEcCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCEeehhhchhcEEECCCCeEEeCCCCccccccccccee
Confidence            999988654           4444455555544             6999999999999999999999998775433222


Q ss_pred             eee--eeecccc----cccccCCCCCCC
Q 047066          235 STM--VQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       235 ~~~--~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      .+.  ..++..|    +..++.++.++|
T Consensus       164 ~~~~~~~~~~~y~~pe~~~~~~~~~~~D  191 (267)
T cd05066         164 YTTRGGKIPIRWTAPEAIAYRKFTSASD  191 (267)
T ss_pred             eecCCCccceeecCHhHhccCccCchhh
Confidence            211  1123456    445566777776

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellul

>cd05085 PTKc_Fer Catalytic domain of the Protein Tyrosine Kinase, Fer

Probab=99.83  E-value=1.1e-19  Score=149.02  Aligned_cols=147  Identities=24%  Similarity=0.397  Sum_probs=111.8

Q ss_pred             ceeeeeCceEEEEEEECCCcEEEEEEecccC-hhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEecCCCCCC-
Q 047066          110 RMIGRGGYGTVFLGSLSDNKAIAIKKSRIVY-QSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEFVKLPTI-  187 (256)
Q Consensus       110 ~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~~~~l-  187 (256)
                      ++||+|+||.||+|...++..+|+|.+.... ......+.+|+.+++.++||||+++++++...+..+++|||+++++| 
T Consensus         1 ~~ig~g~~g~vy~~~~~~~~~~a~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~   80 (250)
T cd05085           1 ELLGKGNFGEVFKGTLKDKTPVAVKTCKEDLPQELKIKFLSEARILKQYDHPNIVKLIGVCTQRQPIYIVMELVPGGDFL   80 (250)
T ss_pred             CccCCCCCceEEEEEecCCcEEEEEecCCcCCHHHHHHHHHHHHHHHhCCCCCcCeEEEEEecCCccEEEEECCCCCcHH
Confidence            3689999999999998788899999876543 33345788999999999999999999999999999999999987664 


Q ss_pred             ----------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceeeeeeeecccc
Q 047066          188 ----------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTLGY  244 (256)
Q Consensus       188 ----------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~~~~Gt~~y  244 (256)
                                ++.....+..+++             +||+|+||++++++.+||+|||++...............+++.|
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~H~dl~p~nili~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~y  160 (250)
T cd05085          81 SFLRKKKDELKTKQLVKFALDAAAGMAYLESKNCIHRDLAARNCLVGENNVLKISDFGMSRQEDDGIYSSSGLKQIPIKW  160 (250)
T ss_pred             HHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCeeecccChheEEEcCCCeEEECCCccceeccccccccCCCCCCcccc
Confidence                      3344444444433             69999999999999999999999986543222111122234556


Q ss_pred             ----cccccCCCCCCC
Q 047066          245 ----YLHTSQGTLNKE  256 (256)
Q Consensus       245 ----~~~~~~~t~ksD  256 (256)
                          +..++.++.++|
T Consensus       161 ~aPE~~~~~~~~~~~D  176 (250)
T cd05085         161 TAPEALNYGRYSSESD  176 (250)
T ss_pred             cCHHHhccCCCCchhH
Confidence                455667777776

Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-c

>cd05032 PTKc_InsR_like Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases

Probab=99.83  E-value=6.8e-20  Score=152.53  Aligned_cols=157  Identities=22%  Similarity=0.295  Sum_probs=120.8

Q ss_pred             HhhcCCCcccceeeeeCceEEEEEEECC------CcEEEEEEecccC-hhHHHHHHHHHHHHHhCCCCcccceeeEEEEC
Q 047066          100 KIATNNYAYDRMIGRGGYGTVFLGSLSD------NKAIAIKKSRIVY-QSQIEQCINKVVVLSQINHRNVVGLLGCCLET  172 (256)
Q Consensus       100 ~~~~~~~~~~~~lg~G~~g~V~~~~~~~------~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~  172 (256)
                      ++..++|++.+.||+|+||.||+|..++      +..+++|...... ......+.+|+.+++.++||||+++++++...
T Consensus         2 ~~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~   81 (277)
T cd05032           2 ELPREKITLIRELGQGSFGMVYEGLAKGVVKGEPETRVAIKTVNENASMRERIEFLNEASVMKEFNCHHVVRLLGVVSTG   81 (277)
T ss_pred             ccchHHeeEEeEecCCCCceEEEEEEeccCCCCcceeEEEEecCCccCHHHHHHHHHHHHHHHhCCCCceeEEEEEEcCC
Confidence            4566789999999999999999998642      3689999876543 34446788999999999999999999999999


Q ss_pred             CEEEEEEecCCCCCCCH--------------------HHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEE
Q 047066          173 EVPLLVNEFVKLPTISW--------------------EVRIRIAAETA-------------EDIKSINILLDDNYTTKVC  219 (256)
Q Consensus       173 ~~~~lv~e~~~~~~l~~--------------------~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~  219 (256)
                      ...+++|||+++++|..                    ...+.++.+++             +||+|+||+++.++.+||+
T Consensus        82 ~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~di~p~nill~~~~~~kl~  161 (277)
T cd05032          82 QPTLVVMELMAKGDLKSYLRSRRPEAENNPGLGPPTLQKFIQMAAEIADGMAYLAAKKFVHRDLAARNCMVAEDLTVKIG  161 (277)
T ss_pred             CCcEEEEecCCCCCHHHHHHhcccchhhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCccccccChheEEEcCCCCEEEC
Confidence            99999999998877532                    23344555543             6999999999999999999


Q ss_pred             ecCCceecCCCCce-eeeeeeecccc----cccccCCCCCCC
Q 047066          220 DFGASKLVPIDETQ-LSTMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       220 DFGla~~~~~~~~~-~~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      |||+++.+...... ......+|..|    ....+.++.++|
T Consensus       162 dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~D  203 (277)
T cd05032         162 DFGMTRDIYETDYYRKGGKGLLPVRWMAPESLKDGVFTTKSD  203 (277)
T ss_pred             CcccchhhccCcccccCCCCCccccccCHHHHhcCCCCcccc
Confidence            99999876443221 11223466677    455667788877

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological

>cd05632 STKc_GRK5 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5

Probab=99.83  E-value=1.7e-19  Score=151.21  Aligned_cols=149  Identities=27%  Similarity=0.350  Sum_probs=117.6

Q ss_pred             CcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC---hhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEec
Q 047066          106 YAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY---QSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEF  181 (256)
Q Consensus       106 ~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~  181 (256)
                      |+..+.||+|+||+||++... +++.+|+|.+....   ......+.+|+.+++.++|+|++++.+.+...+..+++|||
T Consensus         2 ~~~~~~lg~G~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~~~~~lv~e~   81 (285)
T cd05632           2 FRQYRVLGKGGFGEVCACQVRATGKMYACKRLEKKRIKKRKGESMALNEKQILEKVNSQFVVNLAYAYETKDALCLVLTI   81 (285)
T ss_pred             ceEEEEEecCCCeEEEEEEECCCCcEEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCcCceeEEEEEecCCEEEEEEEe
Confidence            566789999999999999864 68899999875432   22335578899999999999999999999999999999999


Q ss_pred             CCCCCC------------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceeee
Q 047066          182 VKLPTI------------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLST  236 (256)
Q Consensus       182 ~~~~~l------------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~  236 (256)
                      +++++|            ++.....++.|++             +||||+||++++++.+||+|||++........  ..
T Consensus        82 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~ql~~~l~~lH~~~iiH~dikp~Nili~~~~~~kl~Dfg~~~~~~~~~~--~~  159 (285)
T cd05632          82 MNGGDLKFHIYNMGNPGFEEERALFYAAEILCGLEDLHRENTVYRDLKPENILLDDYGHIRISDLGLAVKIPEGES--IR  159 (285)
T ss_pred             ccCccHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCeeecCCCHHHEEECCCCCEEEecCCcceecCCCCc--cc
Confidence            988654            3444555555555             69999999999999999999999987543222  12


Q ss_pred             eeeecccc----cccccCCCCCCC
Q 047066          237 MVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       237 ~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      ...|++.|    .+.+..++.++|
T Consensus       160 ~~~g~~~~~aPE~~~~~~~~~~~D  183 (285)
T cd05632         160 GRVGTVGYMAPEVLNNQRYTLSPD  183 (285)
T ss_pred             CCCCCcCccChHHhcCCCCCcccc
Confidence            34588888    555677888877

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with

>cd07874 STKc_JNK3 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3

Probab=99.83  E-value=1e-19  Score=157.15  Aligned_cols=153  Identities=22%  Similarity=0.264  Sum_probs=117.4

Q ss_pred             hcCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEeccc--ChhHHHHHHHHHHHHHhCCCCcccceeeEEEEC------
Q 047066          102 ATNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIV--YQSQIEQCINKVVVLSQINHRNVVGLLGCCLET------  172 (256)
Q Consensus       102 ~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~------  172 (256)
                      ..++|++.+.||+|+||.||++... .++.+|+|.+...  .......+.+|+.+++.++||||+++++++...      
T Consensus        15 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~   94 (355)
T cd07874          15 VLKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKSLEEF   94 (355)
T ss_pred             hhhceeEEEEeeecCCEEEEEEEecCCCceEEEEEeCCcccChHHHHHHHHHHHHHHHhCCCchhceeeeeecccccccc
Confidence            3478999999999999999999864 6889999988643  233446788999999999999999999988643      


Q ss_pred             CEEEEEEecCCCCC-------CCHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCc
Q 047066          173 EVPLLVNEFVKLPT-------ISWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDET  232 (256)
Q Consensus       173 ~~~~lv~e~~~~~~-------l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~  232 (256)
                      ...+++|||++++.       ++......++.|++             |||||+|||++.++.+||+|||+++...... 
T Consensus        95 ~~~~lv~e~~~~~l~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~givHrDikp~Nill~~~~~~kl~Dfg~~~~~~~~~-  173 (355)
T cd07874          95 QDVYLVMELMDANLCQVIQMELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSF-  173 (355)
T ss_pred             ceeEEEhhhhcccHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhCCcccCCCChHHEEECCCCCEEEeeCcccccCCCcc-
Confidence            35799999998743       33444444444443             6999999999999999999999998754322 


Q ss_pred             eeeeeeeecccc----cccccCCCCCCC
Q 047066          233 QLSTMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       233 ~~~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                       ......||+.|    .+.+..++.++|
T Consensus       174 -~~~~~~~t~~y~aPE~~~~~~~~~~~D  200 (355)
T cd07874         174 -MMTPYVVTRYYRAPEVILGMGYKENVD  200 (355)
T ss_pred             -ccCCccccCCccCHHHHcCCCCCchhh
Confidence             12334588888    555667788877

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, strok

>cd06654 STKc_PAK1 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1

Probab=99.83  E-value=1.3e-19  Score=152.78  Aligned_cols=152  Identities=23%  Similarity=0.310  Sum_probs=120.7

Q ss_pred             CCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEecC
Q 047066          104 NNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEFV  182 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~  182 (256)
                      .+|++.+.||+|++|.||++... ++..+++|.+........+.+.+|+.+++.++|||++++++.+......++|+||+
T Consensus        20 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~e~~~l~~~~h~~v~~~~~~~~~~~~~~lv~e~~   99 (296)
T cd06654          20 KKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEYL   99 (296)
T ss_pred             cceeeEEEecCCCCeEEEEEEECCCCcEEEEEEEecCCcchHHHHHHHHHHHHhCCCCCEeeEEEEEEeCCEEEEeeccc
Confidence            57888899999999999999864 68899999887655445577889999999999999999999999999999999999


Q ss_pred             CCCCCC---------HHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceeeeeeee
Q 047066          183 KLPTIS---------WEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQG  240 (256)
Q Consensus       183 ~~~~l~---------~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~~~~G  240 (256)
                      ++++|.         +.....++.+++             +||+|+||+++.++.+||+|||++......... .....|
T Consensus       100 ~~~~L~~~~~~~~~~~~~~~~i~~ql~~aL~~LH~~gi~H~dLkp~Nill~~~~~~kl~dfg~~~~~~~~~~~-~~~~~~  178 (296)
T cd06654         100 AGGSLTDVVTETCMDEGQIAAVCRECLQALEFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSK-RSTMVG  178 (296)
T ss_pred             CCCCHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEEcCCCCEEECccccchhccccccc-cCcccC
Confidence            987763         334445444444             699999999999999999999998875433222 222357


Q ss_pred             cccc----cccccCCCCCCC
Q 047066          241 TLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       241 t~~y----~~~~~~~t~ksD  256 (256)
                      ++.|    ...+..++.++|
T Consensus       179 ~~~y~aPE~~~~~~~~~~~D  198 (296)
T cd06654         179 TPYWMAPEVVTRKAYGPKVD  198 (296)
T ss_pred             CccccCHHHHcCCCCCccch
Confidence            8888    455566777776

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>PHA03209 serine/threonine kinase US3; Provisional

Probab=99.83  E-value=1.5e-19  Score=156.38  Aligned_cols=148  Identities=16%  Similarity=0.264  Sum_probs=117.0

Q ss_pred             hhcCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEE
Q 047066          101 IATNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVN  179 (256)
Q Consensus       101 ~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~  179 (256)
                      ....+|++.+.||+|+||.||+|... ++..||+|.....      ....|+.++++++||||+++++++...+..++++
T Consensus        63 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~valK~~~~~------~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~  136 (357)
T PHA03209         63 VASLGYTVIKTLTPGSEGRVFVATKPGQPDPVVLKIGQKG------TTLIEAMLLQNVNHPSVIRMKDTLVSGAITCMVL  136 (357)
T ss_pred             hhhcCcEEEEEecCCCCeEEEEEEECCCCceEEEEeCCcc------ccHHHHHHHHhCCCCCCcChhheEEeCCeeEEEE
Confidence            34457999999999999999999975 5678999864322      2356999999999999999999999999999999


Q ss_pred             ecCCC----------CCCCHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceeee
Q 047066          180 EFVKL----------PTISWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLST  236 (256)
Q Consensus       180 e~~~~----------~~l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~  236 (256)
                      |++.+          +.+++.....++.|++             |||||+|||++.++.+||+|||+++......  ...
T Consensus       137 e~~~~~l~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~~--~~~  214 (357)
T PHA03209        137 PHYSSDLYTYLTKRSRPLPIDQALIIEKQILEGLRYLHAQRIIHRDVKTENIFINDVDQVCIGDLGAAQFPVVAP--AFL  214 (357)
T ss_pred             EccCCcHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEECCCCCEEEecCccccccccCc--ccc
Confidence            99865          3356666666666655             6999999999999999999999998543221  122


Q ss_pred             eeeecccc----cccccCCCCCCC
Q 047066          237 MVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       237 ~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      ...||+.|    .+.+..++.++|
T Consensus       215 ~~~gt~~y~aPE~~~~~~~~~~~D  238 (357)
T PHA03209        215 GLAGTVETNAPEVLARDKYNSKAD  238 (357)
T ss_pred             cccccccccCCeecCCCCCCchhh
Confidence            34589888    555677888877

>cd05070 PTKc_Fyn_Yrk Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk

Probab=99.82  E-value=6.6e-20  Score=151.38  Aligned_cols=155  Identities=21%  Similarity=0.368  Sum_probs=117.0

Q ss_pred             HhhcCCCcccceeeeeCceEEEEEEECCCcEEEEEEecccChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEE
Q 047066          100 KIATNNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVN  179 (256)
Q Consensus       100 ~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~  179 (256)
                      ++..++|++.+.||+|+||.||++..+++..+++|.+..... ..+.+.+|+.++++++|+|++++++++. .+..+++|
T Consensus         2 ~~~~~~~~~~~~ig~g~~~~v~~~~~~~~~~~~~k~~~~~~~-~~~~~~~E~~~l~~l~~~~i~~~~~~~~-~~~~~lv~   79 (260)
T cd05070           2 EIPRESLQLIKKLGNGQFGEVWMGTWNGNTKVAVKTLKPGTM-SPESFLEEAQIMKKLRHDKLVQLYAVVS-EEPIYIVT   79 (260)
T ss_pred             CCchHHhhhhheeccccCceEEEEEecCCceeEEEEecCCCC-CHHHHHHHHHHHHhcCCCceEEEEeEEC-CCCcEEEE
Confidence            445678899999999999999999987888899998865433 2356899999999999999999999875 45688999


Q ss_pred             ecCCCCCC------------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCcee
Q 047066          180 EFVKLPTI------------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQL  234 (256)
Q Consensus       180 e~~~~~~l------------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~  234 (256)
                      ||+++++|            ++.....++.+++             +||+|+||++++++.+||+|||++..+.......
T Consensus        80 e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH~~~i~H~di~p~Nili~~~~~~~l~dfg~~~~~~~~~~~~  159 (260)
T cd05070          80 EYMSKGSLLDFLKDGEGRALKLPNLVDMAAQVAAGMAYIERMNYIHRDLRSANILVGDGLVCKIADFGLARLIEDNEYTA  159 (260)
T ss_pred             EecCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCccceEEEeCCceEEeCCceeeeeccCccccc
Confidence            99987654            4444455554444             6999999999999999999999998765432221


Q ss_pred             eeeeeecccc----cccccCCCCCCC
Q 047066          235 STMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       235 ~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      .....++..|    +..++.++.++|
T Consensus       160 ~~~~~~~~~y~aPE~~~~~~~~~~~D  185 (260)
T cd05070         160 RQGAKFPIKWTAPEAALYGRFTIKSD  185 (260)
T ss_pred             ccCCCCCccccChHHHhcCCCcchhh
Confidence            1122244556    445566777776

Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that r

>cd06615 PKc_MEK Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase

Probab=99.82  E-value=2.1e-19  Score=152.32  Aligned_cols=150  Identities=21%  Similarity=0.260  Sum_probs=117.1

Q ss_pred             CCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC-hhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEec
Q 047066          104 NNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY-QSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEF  181 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~  181 (256)
                      ++|++.+.||+|+||.||++... ++..+++|.+.... .....++.+|++++.+++||||+++++.+...+..++++||
T Consensus         1 ~~~~~~~~lg~G~~g~v~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~ey   80 (308)
T cd06615           1 DDFEKLGELGAGNGGVVTKVLHRPSGLIMARKLIHLEIKPAIRNQIIRELKVLHECNSPYIVGFYGAFYSDGEISICMEH   80 (308)
T ss_pred             CCceEEeeccCCCCeEEEEEEEcCCCeEEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCEEEEEeec
Confidence            36888899999999999999865 57888998876543 34456788999999999999999999999999999999999


Q ss_pred             CCCCCCC----------HHHHHHHHHHH--------------HhccCCCcEEEcCCCcEEEEecCCceecCCCCceeeee
Q 047066          182 VKLPTIS----------WEVRIRIAAET--------------AEDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTM  237 (256)
Q Consensus       182 ~~~~~l~----------~~~~~~~~~~i--------------~rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~~  237 (256)
                      +++++|.          +.....++.++              |+||+|+|||++.++.+||+|||++..+....   ...
T Consensus        81 ~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~---~~~  157 (308)
T cd06615          81 MDGGSLDQVLKKAGRIPENILGKISIAVLRGLTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSM---ANS  157 (308)
T ss_pred             cCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhCCEEECCCChHHEEEecCCcEEEccCCCcccccccc---ccc
Confidence            9987763          23333444333              36999999999999999999999997653321   123


Q ss_pred             eeecccc----cccccCCCCCCC
Q 047066          238 VQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       238 ~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      ..|++.|    .+.+..++.++|
T Consensus       158 ~~~~~~~~aPE~~~~~~~~~~~D  180 (308)
T cd06615         158 FVGTRSYMSPERLQGTHYTVQSD  180 (308)
T ss_pred             CCCCcCccChhHhcCCCCCccch
Confidence            4577777    445566777776

Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the down

>cd06644 STKc_STK10_LOK Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase

Probab=99.82  E-value=2.7e-19  Score=150.37  Aligned_cols=143  Identities=20%  Similarity=0.224  Sum_probs=115.1

Q ss_pred             hhcCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEE
Q 047066          101 IATNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVN  179 (256)
Q Consensus       101 ~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~  179 (256)
                      .+.+.|++.+.||+|+||.||+|... ++..+++|..........+.+.+|+.+++.++|||++++++.+...+..+++|
T Consensus         9 ~~~~~y~i~~~lg~g~~g~vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~   88 (292)
T cd06644           9 DPNEVWEIIGELGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYMVEIEILATCNHPYIVKLLGAFYWDGKLWIMI   88 (292)
T ss_pred             CcchhhhhhheecCCCCeEEEEEEECCCCceEEEEEeccCCHHHHHHHHHHHHHHHhCCCCcEeeeEEEEEeCCeEEEEE
Confidence            34467899999999999999999975 58899999987766666788999999999999999999999999999999999


Q ss_pred             ecCCCCCC-----------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceee
Q 047066          180 EFVKLPTI-----------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLS  235 (256)
Q Consensus       180 e~~~~~~l-----------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~  235 (256)
                      ||++++++           ++.....++.|++             +||+|+||+++.++.+||+|||++......... .
T Consensus        89 e~~~~~~l~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lH~~~i~H~dlkp~Nili~~~~~~kl~dfg~~~~~~~~~~~-~  167 (292)
T cd06644          89 EFCPGGAVDAIMLELDRGLTEPQIQVICRQMLEALQYLHSMKIIHRDLKAGNVLLTLDGDIKLADFGVSAKNVKTLQR-R  167 (292)
T ss_pred             ecCCCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhcCCeeecCCCcceEEEcCCCCEEEccCccceeccccccc-c
Confidence            99988765           3444445555544             699999999999999999999998765332111 2


Q ss_pred             eeeeecccc
Q 047066          236 TMVQGTLGY  244 (256)
Q Consensus       236 ~~~~Gt~~y  244 (256)
                      ....|++.|
T Consensus       168 ~~~~~~~~y  176 (292)
T cd06644         168 DSFIGTPYW  176 (292)
T ss_pred             ceecCCccc
Confidence            233477777

Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types.

>cd05607 STKc_GRK7 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7

Probab=99.82  E-value=1.9e-19  Score=150.31  Aligned_cols=143  Identities=24%  Similarity=0.289  Sum_probs=111.4

Q ss_pred             eeeeCceEEEEEEEC-CCcEEEEEEecccC---hhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEecCCCCCC
Q 047066          112 IGRGGYGTVFLGSLS-DNKAIAIKKSRIVY---QSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEFVKLPTI  187 (256)
Q Consensus       112 lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~~~~l  187 (256)
                      ||+|+||.||++..+ +++.+|+|.+....   ......+..|++++++++||||+++.+.+......+++|||+++++|
T Consensus         1 lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~E~~il~~l~hp~i~~~~~~~~~~~~~~lv~e~~~g~~L   80 (277)
T cd05607           1 LGKGGFGEVCAVQVKNTGKMYACKKLDKKRLKKKSGEKMALLEKEILEKVNSPFIVNLAYAFESKTHLCLVMSLMNGGDL   80 (277)
T ss_pred             CCCCCceEEEEEEEccCCcEEEEEEEcHHHhhcchhhHHHHHHHHHHHhcCCCcEEEEEEEEecCCeEEEEEecCCCCCH
Confidence            689999999999865 68999999875422   12234556799999999999999999999999999999999998776


Q ss_pred             C------------HHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceeeeeeeecc
Q 047066          188 S------------WEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTL  242 (256)
Q Consensus       188 ~------------~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~~~~Gt~  242 (256)
                      .            +.....++.|++             +||||+||++++++.++|+|||++........  .....||+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~ivH~dikp~Nili~~~~~~~l~Dfg~~~~~~~~~~--~~~~~~~~  158 (277)
T cd05607          81 KYHIYNVGERGLEMERVIHYSAQITCGILHLHSMDIVYRDMKPENVLLDDQGNCRLSDLGLAVELKDGKT--ITQRAGTN  158 (277)
T ss_pred             HHHHHhccccCCCHHHHHHHHHHHHHHHHHHHHCCEEEccCChHhEEEcCCCCEEEeeceeeeecCCCce--eeccCCCC
Confidence            3            333344555544             69999999999999999999999987654322  23345888


Q ss_pred             cc----cccccCCCCCCC
Q 047066          243 GY----YLHTSQGTLNKE  256 (256)
Q Consensus       243 ~y----~~~~~~~t~ksD  256 (256)
                      .|    .+.++.++.++|
T Consensus       159 ~y~aPE~~~~~~~~~~~D  176 (277)
T cd05607         159 GYMAPEILKEEPYSYPVD  176 (277)
T ss_pred             CccCHHHHccCCCCCchh
Confidence            88    555666788877

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual gr

>cd06611 STKc_SLK_like Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases

Probab=99.82  E-value=1.6e-19  Score=150.62  Aligned_cols=154  Identities=19%  Similarity=0.248  Sum_probs=121.6

Q ss_pred             hcCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEe
Q 047066          102 ATNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNE  180 (256)
Q Consensus       102 ~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e  180 (256)
                      +.++|++.+.||+|++|.||++... ++..+++|..........+.+..|++++++++|||++++++.+..++..+++||
T Consensus         3 ~~~~~~i~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   82 (280)
T cd06611           3 PNDIWEIIGELGDGAFGKVYKAQHKETGLFAAAKIIQIESEEELEDFMVEIDILSECKHPNIVGLYEAYFYENKLWILIE   82 (280)
T ss_pred             chhHHHHHHHhcCCCCceEEEEEEcCCCcEEEEEEEeeCCHHHHHHHHHHHHHHHhCCCCceeEEEEEEecCCeEEEEee
Confidence            4567899999999999999999975 688999998876666666789999999999999999999999999999999999


Q ss_pred             cCCCCCC-----------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceeee
Q 047066          181 FVKLPTI-----------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLST  236 (256)
Q Consensus       181 ~~~~~~l-----------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~  236 (256)
                      |+++++|           +......++.+++             +||+|+||+++.++.++|+|||++......... ..
T Consensus        83 ~~~~~~L~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lh~~~i~h~dl~p~nili~~~~~~~l~d~g~~~~~~~~~~~-~~  161 (280)
T cd06611          83 FCDGGALDSIMLELERGLTEPQIRYVCRQMLEALNFLHSHKVIHRDLKAGNILLTLDGDVKLADFGVSAKNKSTLQK-RD  161 (280)
T ss_pred             ccCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCChhhEEECCCCCEEEccCccchhhcccccc-cc
Confidence            9988654           4444455555554             699999999999999999999998765432221 22


Q ss_pred             eeeecccc----cc-----cccCCCCCCC
Q 047066          237 MVQGTLGY----YL-----HTSQGTLNKE  256 (256)
Q Consensus       237 ~~~Gt~~y----~~-----~~~~~t~ksD  256 (256)
                      ...||+.|    .+     ....++.++|
T Consensus       162 ~~~~~~~y~~PE~~~~~~~~~~~~~~~sD  190 (280)
T cd06611         162 TFIGTPYWMAPEVVACETFKDNPYDYKAD  190 (280)
T ss_pred             eeecchhhcCHHHHhhcccCCCCCCcccc
Confidence            34578877    22     2344566776

Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated anti

>cd05580 STKc_PKA Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase

Probab=99.82  E-value=2.1e-19  Score=150.92  Aligned_cols=149  Identities=26%  Similarity=0.336  Sum_probs=118.2

Q ss_pred             CCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC---hhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEE
Q 047066          104 NNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY---QSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVN  179 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~  179 (256)
                      ++|++.+.||+|++|.||++... +++.+|+|.+....   ......+.+|+++++.++||||+++++.+...+..+++|
T Consensus         1 ~~y~~~~~ig~g~~~~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~   80 (290)
T cd05580           1 DDFEFIKTLGTGSFGRVMLVRHKGSGKYYALKILSKAKIVKLKQVEHVLNEKRILQSIRHPFLVNLYGSFQDDSNLYLVM   80 (290)
T ss_pred             CceEEEEEeecCCCeEEEEEEEcCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCccceeeEEEcCCeEEEEE
Confidence            36888899999999999999975 68899999875432   234567889999999999999999999999999999999


Q ss_pred             ecCCCCCC----------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceeee
Q 047066          180 EFVKLPTI----------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLST  236 (256)
Q Consensus       180 e~~~~~~l----------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~  236 (256)
                      ||+++++|          +......++.+++             +||+|+||+++.++.+||+|||+++.....    ..
T Consensus        81 e~~~~~~L~~~~~~~~~l~~~~~~~~~~qil~~l~~lH~~~i~H~dl~p~nili~~~~~~kl~dfg~~~~~~~~----~~  156 (290)
T cd05580          81 EYVPGGELFSHLRKSGRFPEPVARFYAAQVVLALEYLHSLDIVYRDLKPENLLLDSDGYIKITDFGFAKRVKGR----TY  156 (290)
T ss_pred             ecCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCEecCCCCHHHEEECCCCCEEEeeCCCccccCCC----CC
Confidence            99987654          4444444444444             699999999999999999999999876543    22


Q ss_pred             eeeecccc----cccccCCCCCCC
Q 047066          237 MVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       237 ~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      ...|++.|    ...+...+.++|
T Consensus       157 ~~~~~~~y~aPE~~~~~~~~~~~D  180 (290)
T cd05580         157 TLCGTPEYLAPEIILSKGYGKAVD  180 (290)
T ss_pred             CCCCCccccChhhhcCCCCCcccc
Confidence            33578888    444556677776

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubi

>cd05630 STKc_GRK6 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6

Probab=99.82  E-value=2.5e-19  Score=150.17  Aligned_cols=149  Identities=27%  Similarity=0.368  Sum_probs=116.5

Q ss_pred             CcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC---hhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEec
Q 047066          106 YAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY---QSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEF  181 (256)
Q Consensus       106 ~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~  181 (256)
                      |+..+.||+|+||.||++... +++.+|+|.+....   ......+.+|+.+++.++|+|++.+.+.+...+..+++|||
T Consensus         2 f~~~~~ig~G~~g~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~~~~~lv~e~   81 (285)
T cd05630           2 FRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGESMALNEKQILEKVNSRFVVSLAYAYETKDALCLVLTL   81 (285)
T ss_pred             ceeeEEeecCCCeEEEEEEEcCCCceEEEEEEehhhccchHHHHHHHHHHHHHHhCCCCCeeeeeEEEecCCEEEEEEEe
Confidence            667789999999999999865 68899999875432   22235678899999999999999999999999999999999


Q ss_pred             CCCCCCCH------------HHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceeee
Q 047066          182 VKLPTISW------------EVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLST  236 (256)
Q Consensus       182 ~~~~~l~~------------~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~  236 (256)
                      +++++|..            .....++.|++             +||||+||++++++.++|+|||++........  ..
T Consensus        82 ~~g~~L~~~l~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~~iiH~dikp~Nil~~~~~~~~l~Dfg~~~~~~~~~~--~~  159 (285)
T cd05630          82 MNGGDLKFHIYHMGEAGFEEGRAVFYAAEICCGLEDLHQERIVYRDLKPENILLDDHGHIRISDLGLAVHVPEGQT--IK  159 (285)
T ss_pred             cCCCcHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhCCEEeCCCCHHHEEECCCCCEEEeeccceeecCCCcc--cc
Confidence            99877632            23334444444             69999999999999999999999987543322  12


Q ss_pred             eeeecccc----cccccCCCCCCC
Q 047066          237 MVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       237 ~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      ...||+.|    .+.+..++.++|
T Consensus       160 ~~~g~~~y~aPE~~~~~~~~~~~D  183 (285)
T cd05630         160 GRVGTVGYMAPEVVKNERYTFSPD  183 (285)
T ss_pred             CCCCCccccChHHHcCCCCCCccc
Confidence            23588888    556677888877

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as

>cd08228 STKc_Nek6 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6

Probab=99.82  E-value=1.5e-19  Score=149.67  Aligned_cols=152  Identities=24%  Similarity=0.402  Sum_probs=117.8

Q ss_pred             CCCcccceeeeeCceEEEEEEEC-CCcEEEEEEeccc---ChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEE
Q 047066          104 NNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIV---YQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVN  179 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~  179 (256)
                      ++|++.+.||+|+||.||+|... +++.+|+|.+...   .......+.+|+.+++.++|||++++++++...+..++++
T Consensus         2 ~~~~i~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~   81 (267)
T cd08228           2 ANFQIEKKIGRGQFSEVYRATCLLDRKPVALKKVQIFEMMDAKARQDCVKEIDLLKQLNHPNVIKYLDSFIEDNELNIVL   81 (267)
T ss_pred             cceeeeeeeccCCCeeEEEEEEeCCCCEEEEEEeeccccCCHHHHHHHHHHHHHHHhCCCcceeeeeeeEEECCeEEEEE
Confidence            57889999999999999999965 6889999977542   2344467899999999999999999999999999999999


Q ss_pred             ecCCCCCCC--------------HHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCc
Q 047066          180 EFVKLPTIS--------------WEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDET  232 (256)
Q Consensus       180 e~~~~~~l~--------------~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~  232 (256)
                      ||+++++|.              ......++.+++             +||+|+||+++.++.++|+|||++..+.....
T Consensus        82 e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~i~H~dl~~~nil~~~~~~~~l~d~g~~~~~~~~~~  161 (267)
T cd08228          82 ELADAGDLSQMIKYFKKQKRLIPERTVWKYFVQLCSAVEHMHSRRVMHRDIKPANVFITATGVVKLGDLGLGRFFSSKTT  161 (267)
T ss_pred             EecCCCcHHHHHHHhhhccCCCCHHHHHHHHHHHHHHHHHHhhCCeeCCCCCHHHEEEcCCCCEEECccccceeccchhH
Confidence            999987653              233344444444             59999999999999999999999987654322


Q ss_pred             eeeeeeeecccc----cccccCCCCCCC
Q 047066          233 QLSTMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       233 ~~~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      . .....|++.|    .+.+..++.++|
T Consensus       162 ~-~~~~~~~~~~~aPE~~~~~~~~~~~D  188 (267)
T cd08228         162 A-AHSLVGTPYYMSPERIHENGYNFKSD  188 (267)
T ss_pred             H-HhcCCCCccccChhhhccCCCCchhh
Confidence            1 1223477777    444556666666

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase

>PTZ00036 glycogen synthase kinase; Provisional

Probab=99.82  E-value=1.3e-19  Score=160.77  Aligned_cols=150  Identities=22%  Similarity=0.310  Sum_probs=110.0

Q ss_pred             hhcCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccChhHHHHHHHHHHHHHhCCCCcccceeeEEEEC-------
Q 047066          101 IATNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLET-------  172 (256)
Q Consensus       101 ~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~-------  172 (256)
                      ....+|++.+.||+|+||.||+|... +++.||+|++....    ....+|+.+++.++||||+++.+++...       
T Consensus        63 ~~~~~y~~~~~LG~G~fg~Vy~~~~~~~~~~vAiK~i~~~~----~~~~~Ei~il~~l~h~niv~l~~~~~~~~~~~~~~  138 (440)
T PTZ00036         63 SPNKSYKLGNIIGNGSFGVVYEAICIDTSEKVAIKKVLQDP----QYKNRELLIMKNLNHINIIFLKDYYYTECFKKNEK  138 (440)
T ss_pred             CcCCeEEEeEEEEeCCCEEEEEEEECCCCCEEEEEEEecCc----chHHHHHHHHHhcCCCCCcceeeeEeecccccCCC
Confidence            45568999999999999999999975 68899999875432    2234799999999999999999887532       


Q ss_pred             -CEEEEEEecCCCC-------------CCCHHHHHHHHHHHH-------------hccCCCcEEEcCCC-cEEEEecCCc
Q 047066          173 -EVPLLVNEFVKLP-------------TISWEVRIRIAAETA-------------EDIKSINILLDDNY-TTKVCDFGAS  224 (256)
Q Consensus       173 -~~~~lv~e~~~~~-------------~l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~-~~ki~DFGla  224 (256)
                       ..++++|||+.++             .+++.....++.|++             |||||+|||++.++ .+||+|||+|
T Consensus       139 ~~~l~lvmE~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~qi~~gL~yLH~~~IiHrDLKp~NILl~~~~~~vkL~DFGla  218 (440)
T PTZ00036        139 NIFLNVVMEFIPQTVHKYMKHYARNNHALPLFLVKLYSYQLCRALAYIHSKFICHRDLKPQNLLIDPNTHTLKLCDFGSA  218 (440)
T ss_pred             ceEEEEEEecCCccHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHCCEecCCcCHHHEEEcCCCCceeeeccccc
Confidence             2467899999763             234444444444443             79999999999665 7999999999


Q ss_pred             eecCCCCceeeeeeeecccc----ccc-ccCCCCCCC
Q 047066          225 KLVPIDETQLSTMVQGTLGY----YLH-TSQGTLNKE  256 (256)
Q Consensus       225 ~~~~~~~~~~~~~~~Gt~~y----~~~-~~~~t~ksD  256 (256)
                      +.+.....  .....||+.|    .+. ...++.++|
T Consensus       219 ~~~~~~~~--~~~~~~t~~y~aPE~~~~~~~~~~~~D  253 (440)
T PTZ00036        219 KNLLAGQR--SVSYICSRFYRAPELMLGATNYTTHID  253 (440)
T ss_pred             hhccCCCC--cccCCCCcCccCHHHhcCCCCCCcHHH
Confidence            87643322  1234588888    232 345777776

>cd07873 STKc_PCTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase

Probab=99.82  E-value=1.4e-19  Score=152.81  Aligned_cols=152  Identities=22%  Similarity=0.309  Sum_probs=114.1

Q ss_pred             CCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC-hhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEec
Q 047066          104 NNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY-QSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEF  181 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~  181 (256)
                      ++|.+.+.||+|+||.||+|..+ ++..||+|.+.... ......+.+|+.+++.++||||+++++++...+..++++||
T Consensus         6 ~~y~~~~~lg~g~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~nI~~~~~~~~~~~~~~lv~e~   85 (301)
T cd07873           6 ETYIKLDKLGEGTYATVYKGRSKLTDNLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIIHTEKSLTLVFEY   85 (301)
T ss_pred             cceEEeeEeccCcCEEEEEEEEcCCCcEEEEEEEecccccCchhHHHHHHHHHHhcCCCCcceEEEEEecCCeEEEEEec
Confidence            57889999999999999999875 67899999876433 23335678899999999999999999999999999999999


Q ss_pred             CCC----------CCCCHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceeeeee
Q 047066          182 VKL----------PTISWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMV  238 (256)
Q Consensus       182 ~~~----------~~l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~~~  238 (256)
                      +.+          +.+++.....++.+++             +||||+||++++++.+||+|||++.....+.... ...
T Consensus        86 ~~~~l~~~l~~~~~~~~~~~~~~~~~qi~~aL~~lH~~~i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~~~~~-~~~  164 (301)
T cd07873          86 LDKDLKQYLDDCGNSINMHNVKLFLFQLLRGLNYCHRRKVLHRDLKPQNLLINERGELKLADFGLARAKSIPTKTY-SNE  164 (301)
T ss_pred             cccCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCCHHHEEECCCCcEEECcCcchhccCCCCCcc-ccc
Confidence            975          2234444455555544             6999999999999999999999998654332221 223


Q ss_pred             eecccc----cc-cccCCCCCCC
Q 047066          239 QGTLGY----YL-HTSQGTLNKE  256 (256)
Q Consensus       239 ~Gt~~y----~~-~~~~~t~ksD  256 (256)
                      .+++.|    .+ ....++.++|
T Consensus       165 ~~~~~y~~PE~~~~~~~~~~~~D  187 (301)
T cd07873         165 VVTLWYRPPDILLGSTDYSTQID  187 (301)
T ss_pred             ceeecccCcHHHhCCCCCccHHH
Confidence            467777    22 2234555555

Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and may pl

>cd06625 STKc_MEKK3_like Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=99.82  E-value=2.9e-19  Score=147.59  Aligned_cols=153  Identities=22%  Similarity=0.331  Sum_probs=116.5

Q ss_pred             CCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC-----hhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEE
Q 047066          104 NNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY-----QSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLL  177 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~-----~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~l  177 (256)
                      ++|.+.+.||+|++|.||.+... ++..+++|.+....     ......+.+|+.++++++||||+++++++...+..++
T Consensus         2 ~~~~~~~~lg~g~~~~vy~~~~~~~~~~~~lk~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~   81 (263)
T cd06625           2 TNWRRGKLLGQGAFGRVYLCYDVDTGRELAVKQVPFDPDSPETKKEVNALECEIQLLKNLQHERIVQYYGCLRDDETLSI   81 (263)
T ss_pred             CcccccceecCCCceEEEEEEEcCCCcEEEEEEEeecccchhhHHHHHHHHHHHHHHHhCCCCCeeeeEEEEccCCeEEE
Confidence            46888999999999999999864 68899999875432     2234578899999999999999999999999999999


Q ss_pred             EEecCCCCCCC----------HHHHHHHHHHH-------------HhccCCCcEEEcCCCcEEEEecCCceecCCCCcee
Q 047066          178 VNEFVKLPTIS----------WEVRIRIAAET-------------AEDIKSINILLDDNYTTKVCDFGASKLVPIDETQL  234 (256)
Q Consensus       178 v~e~~~~~~l~----------~~~~~~~~~~i-------------~rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~  234 (256)
                      ++||+++++|.          ......++.++             |+||+|+||++++++.++|+|||+++.........
T Consensus        82 v~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~i~H~dl~p~nilv~~~~~~~l~dfg~~~~~~~~~~~~  161 (263)
T cd06625          82 FMEYMPGGSVKDQLKAYGALTETVTRKYTRQILEGVEYLHSNMIVHRDIKGANILRDSAGNVKLGDFGASKRLQTICSSG  161 (263)
T ss_pred             EEEECCCCcHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCCEEEeecccceecccccccc
Confidence            99999987763          23333444443             36999999999999999999999998764322111


Q ss_pred             e--eeeeecccc----cccccCCCCCCC
Q 047066          235 S--TMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       235 ~--~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      .  ....|++.|    .+.+..++.++|
T Consensus       162 ~~~~~~~~~~~y~aPE~~~~~~~~~~~D  189 (263)
T cd06625         162 TGMKSVTGTPYWMSPEVISGEGYGRKAD  189 (263)
T ss_pred             ccccCCCcCccccCcceeccCCCCchhh
Confidence            1  223467777    444555677776

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades t

>cd08529 STKc_FA2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

Probab=99.82  E-value=3.6e-19  Score=146.29  Aligned_cols=151  Identities=21%  Similarity=0.335  Sum_probs=119.8

Q ss_pred             CCcccceeeeeCceEEEEEEEC-CCcEEEEEEeccc--ChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEec
Q 047066          105 NYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIV--YQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEF  181 (256)
Q Consensus       105 ~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~  181 (256)
                      +|++.+.||+|++|.||++..+ ++..+++|.+...  .......+.+|+.+++.++|||++++++++...+..++++||
T Consensus         1 ~~~~~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   80 (256)
T cd08529           1 DFEILNKIGKGSFGVVFKVVRKADKRVYAMKQIDLSKMNRREREEAIDEARVLAKLDSSYIIRYYESFLDKGKLNIVMEY   80 (256)
T ss_pred             CceEeEEecCCCCeEEEEEEEcCCCcEEEEEEeehhhCCHHHHHHHHHHHHHHHhcCCCCeehheeeeccCCEEEEEEEe
Confidence            4677789999999999999975 6889999987543  345567889999999999999999999999999999999999


Q ss_pred             CCCCCC------------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceeee
Q 047066          182 VKLPTI------------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLST  236 (256)
Q Consensus       182 ~~~~~l------------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~  236 (256)
                      +++++|            ++.....++.+++             +||+|+||++++++.+||+|||+++.+...... ..
T Consensus        81 ~~~~~L~~~l~~~~~~~~~~~~~~~i~~~l~~al~~lH~~~i~h~dl~~~nili~~~~~~~l~df~~~~~~~~~~~~-~~  159 (256)
T cd08529          81 AENGDLHKLLKMQRGRPLPEDQVWRFFIQILLGLAHLHSKKILHRDIKSLNLFLDAYDNVKIGDLGVAKLLSDNTNF-AN  159 (256)
T ss_pred             CCCCcHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCcceEEEeCCCCEEEcccccceeccCccch-hh
Confidence            988665            3333344454444             599999999999999999999999877544322 23


Q ss_pred             eeeecccc----cccccCCCCCCC
Q 047066          237 MVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       237 ~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      ...|++.|    +..++.++.++|
T Consensus       160 ~~~~~~~y~aPE~~~~~~~~~~~D  183 (256)
T cd08529         160 TIVGTPYYLSPELCEDKPYNEKSD  183 (256)
T ss_pred             ccccCccccCHHHhcCCCCCCccc
Confidence            34588888    555666788877

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cyc

>cd05069 PTKc_Yes Catalytic domain of the Protein Tyrosine Kinase, Yes

Probab=99.82  E-value=1.1e-19  Score=150.20  Aligned_cols=155  Identities=22%  Similarity=0.372  Sum_probs=114.8

Q ss_pred             HhhcCCCcccceeeeeCceEEEEEEECCCcEEEEEEecccChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEE
Q 047066          100 KIATNNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVN  179 (256)
Q Consensus       100 ~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~  179 (256)
                      ++..++|.+.+.||+|++|.||++....+..+++|.+..... ..+.+.+|+.+++.++|||++++++++. .+..+++|
T Consensus         2 ~~~~~~~~~~~~ig~g~~~~v~~~~~~~~~~~~lK~~~~~~~-~~~~~~~E~~~l~~l~h~~i~~~~~~~~-~~~~~~v~   79 (260)
T cd05069           2 EIPRESLRLDVKLGQGCFGEVWMGTWNGTTKVAIKTLKPGTM-MPEAFLQEAQIMKKLRHDKLVPLYAVVS-EEPIYIVT   79 (260)
T ss_pred             cCChHHeeeeeeecCcCCCeEEEEEEcCCceEEEEEcccCCc-cHHHHHHHHHHHHhCCCCCeeeEEEEEc-CCCcEEEE
Confidence            345567889999999999999999987777899998764332 2366889999999999999999998875 45688999


Q ss_pred             ecCCCCCC------------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCcee
Q 047066          180 EFVKLPTI------------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQL  234 (256)
Q Consensus       180 e~~~~~~l------------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~  234 (256)
                      ||+.+++|            ++.....++.+++             +||+|+||++++++.+||+|||+++.........
T Consensus        80 e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH~~~i~H~dl~~~Nill~~~~~~~l~dfg~~~~~~~~~~~~  159 (260)
T cd05069          80 EFMGKGSLLDFLKEGDGKYLKLPQLVDMAAQIADGMAYIERMNYIHRDLRAANILVGDNLVCKIADFGLARLIEDNEYTA  159 (260)
T ss_pred             EcCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHhCCEeecccCcceEEEcCCCeEEECCCccceEccCCcccc
Confidence            99988765            3333444454444             6999999999999999999999998764433222


Q ss_pred             eeeeeecccc----cccccCCCCCCC
Q 047066          235 STMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       235 ~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      .....++..|    +..++.++.++|
T Consensus       160 ~~~~~~~~~y~~Pe~~~~~~~~~~~D  185 (260)
T cd05069         160 RQGAKFPIKWTAPEAALYGRFTIKSD  185 (260)
T ss_pred             cCCCccchhhCCHHHhccCCcChHHH
Confidence            2222345556    444455666555

Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine an

>PHA03207 serine/threonine kinase US3; Provisional

Probab=99.82  E-value=2.1e-19  Score=157.42  Aligned_cols=150  Identities=21%  Similarity=0.217  Sum_probs=118.6

Q ss_pred             hcCCCcccceeeeeCceEEEEEEEC---CCcEEEEEEecccChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEE
Q 047066          102 ATNNYAYDRMIGRGGYGTVFLGSLS---DNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLV  178 (256)
Q Consensus       102 ~~~~~~~~~~lg~G~~g~V~~~~~~---~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv  178 (256)
                      ...+|.+.+.||+|+||.||++...   .+..|++|.+...     ....+|+.+++.++||||+++++++...+..+++
T Consensus        90 ~~~~y~i~~~Lg~G~~g~Vy~~~~~~~~~~~~v~vK~~~~~-----~~~~~E~~il~~l~h~~iv~~~~~~~~~~~~~lv  164 (392)
T PHA03207         90 VRMQYNILSSLTPGSEGEVFVCTKHGDEQRKKVIVKAVTGG-----KTPGREIDILKTISHRAIINLIHAYRWKSTVCMV  164 (392)
T ss_pred             ccCceEEEEeecCCCCeEEEEEEEcCCccceeEEEEecccc-----ccHHHHHHHHHhcCCCCccceeeeEeeCCEEEEE
Confidence            3467999999999999999999753   3568899876532     2345799999999999999999999999999999


Q ss_pred             EecCCC---------CCCCHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCcee-e
Q 047066          179 NEFVKL---------PTISWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQL-S  235 (256)
Q Consensus       179 ~e~~~~---------~~l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~-~  235 (256)
                      ||++.+         +.+++.....++.|++             |||||+|||++.++.+||+|||+++.+....... .
T Consensus       165 ~e~~~~~l~~~l~~~~~l~~~~~~~i~~ql~~aL~~LH~~givHrDlkp~Nill~~~~~~~l~DfG~a~~~~~~~~~~~~  244 (392)
T PHA03207        165 MPKYKCDLFTYVDRSGPLPLEQAITIQRRLLEALAYLHGRGIIHRDVKTENIFLDEPENAVLGDFGAACKLDAHPDTPQC  244 (392)
T ss_pred             ehhcCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCCHHHEEEcCCCCEEEccCccccccCcccccccc
Confidence            999865         4456666666666655             7999999999999999999999998765433221 2


Q ss_pred             eeeeecccc----cccccCCCCCCC
Q 047066          236 TMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       236 ~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      ....||+.|    .+.+..++.++|
T Consensus       245 ~~~~gt~~y~aPE~~~~~~~~~~~D  269 (392)
T PHA03207        245 YGWSGTLETNSPELLALDPYCAKTD  269 (392)
T ss_pred             cccccccCccCHhHhcCCCCCchhh
Confidence            234699999    556677888877

>cd05048 PTKc_Ror Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

Probab=99.82  E-value=1e-19  Score=151.96  Aligned_cols=153  Identities=20%  Similarity=0.333  Sum_probs=117.6

Q ss_pred             CCCcccceeeeeCceEEEEEEECC------CcEEEEEEecccC-hhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEE
Q 047066          104 NNYAYDRMIGRGGYGTVFLGSLSD------NKAIAIKKSRIVY-QSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPL  176 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~V~~~~~~~------~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~  176 (256)
                      ++|++.+.||+|+||.||+|....      ...+++|.+.... ......+.+|+.++..++||||+++++++...+..+
T Consensus         5 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~v~~K~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~~~~~   84 (283)
T cd05048           5 SAVRFLEELGEGAFGKVYKGELTGPNERLSATSVAIKTLKENAEPKVQQEFRQEAELMSDLQHPNIVCLLGVCTKEQPTC   84 (283)
T ss_pred             HHcchhhcccCccCCcEEEEEEecCCCCcceeeEEEEecccCCCHHHHHHHHHHHHHHHhcCCcccceEEEEEcCCCceE
Confidence            478889999999999999998532      2578999876443 344567899999999999999999999999988999


Q ss_pred             EEEecCCCCCCCH--------------------------HHHHHHHHHHH-------------hccCCCcEEEcCCCcEE
Q 047066          177 LVNEFVKLPTISW--------------------------EVRIRIAAETA-------------EDIKSINILLDDNYTTK  217 (256)
Q Consensus       177 lv~e~~~~~~l~~--------------------------~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~k  217 (256)
                      +++||+++++|..                          .....++.+++             +||||+||++++++.+|
T Consensus        85 ~~~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~al~~lH~~~i~H~dlkp~Nil~~~~~~~~  164 (283)
T cd05048          85 MLFEYLAHGDLHEFLVRNSPHSDVGAESGDETVKSSLDCSDFLHIAIQIAAGMEYLSSHHFVHRDLAARNCLVGEGLTVK  164 (283)
T ss_pred             EEEecCCCCcHHHHHHhcCCCcccccccccccccCCCCHHHHHHHHHHHHHHHHHHHhCCeeccccccceEEEcCCCcEE
Confidence            9999998876532                          22334555544             59999999999999999


Q ss_pred             EEecCCceecCCCCce-eeeeeeecccc----cccccCCCCCCC
Q 047066          218 VCDFGASKLVPIDETQ-LSTMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       218 i~DFGla~~~~~~~~~-~~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      |+|||+++........ ......+++.|    ++..+.+++++|
T Consensus       165 L~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sD  208 (283)
T cd05048         165 ISDFGLSRDIYSADYYRVQSKSLLPVRWMPPEAILYGKFTTESD  208 (283)
T ss_pred             ECCCcceeeccccccccccCCCcccccccCHHHhccCcCchhhh
Confidence            9999999876433221 12233467777    455677888877

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimer

>cd05095 PTKc_DDR2 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2

Probab=99.82  E-value=1.4e-19  Score=152.42  Aligned_cols=155  Identities=19%  Similarity=0.342  Sum_probs=116.3

Q ss_pred             hcCCCcccceeeeeCceEEEEEEEC-----------------CCcEEEEEEeccc-ChhHHHHHHHHHHHHHhCCCCccc
Q 047066          102 ATNNYAYDRMIGRGGYGTVFLGSLS-----------------DNKAIAIKKSRIV-YQSQIEQCINKVVVLSQINHRNVV  163 (256)
Q Consensus       102 ~~~~~~~~~~lg~G~~g~V~~~~~~-----------------~~~~vavK~~~~~-~~~~~~~~~~E~~~l~~l~h~niv  163 (256)
                      +.++|++.+.||+|+||.||++...                 +...+|+|.+... ......++.+|+.+++.++|+||+
T Consensus         3 ~~~~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~   82 (296)
T cd05095           3 PRKRLTFKEKLGEGQFGEVHLCEAEGMEKFMDKDFSLDVSGNQPVLVAVKMLREDANKNARNDFLKEIKIMSRLKDPNII   82 (296)
T ss_pred             ChhhceeeeeccCCCCCeEEecccccccccccccccccCCCCceeEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCcc
Confidence            4567999999999999999998532                 2346899988654 344557899999999999999999


Q ss_pred             ceeeEEEECCEEEEEEecCCCCCCCH---------------------HHHHHHHHHHH-------------hccCCCcEE
Q 047066          164 GLLGCCLETEVPLLVNEFVKLPTISW---------------------EVRIRIAAETA-------------EDIKSINIL  209 (256)
Q Consensus       164 ~l~~~~~~~~~~~lv~e~~~~~~l~~---------------------~~~~~~~~~i~-------------rdlk~~NiL  209 (256)
                      ++++++...+..+++|||+.+++|..                     .....++.+++             +||||+|||
T Consensus        83 ~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~~~i~H~dlkp~Nil  162 (296)
T cd05095          83 RLLAVCITSDPLCMITEYMENGDLNQFLSRHEPQEAAEKADVVTISYSTLIFMATQIASGMKYLSSLNFVHRDLATRNCL  162 (296)
T ss_pred             eEEEEEecCCccEEEEEeCCCCcHHHHHHhcCcccccccccccccCHHHHHHHHHHHHHHHHHHHHCCeecccCChheEE
Confidence            99999999999999999998876632                     23444455543             699999999


Q ss_pred             EcCCCcEEEEecCCceecCCCCcee-eeeeeecccc----cccccCCCCCCC
Q 047066          210 LDDNYTTKVCDFGASKLVPIDETQL-STMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       210 i~~~~~~ki~DFGla~~~~~~~~~~-~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      ++.++.++|+|||+++.+....... .....+++.|    ....+.++.++|
T Consensus       163 i~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~D  214 (296)
T cd05095         163 VGKNYTIKIADFGMSRNLYSGDYYRIQGRAVLPIRWMSWESILLGKFTTASD  214 (296)
T ss_pred             EcCCCCEEeccCcccccccCCcceeccCcCcCccccCCHHHHhcCCccchhh
Confidence            9999999999999998764332211 1112234455    344567777777

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues wit

>cd06655 STKc_PAK2 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2

Probab=99.82  E-value=2.3e-19  Score=151.33  Aligned_cols=152  Identities=24%  Similarity=0.341  Sum_probs=121.2

Q ss_pred             CCCcccceeeeeCceEEEEEEE-CCCcEEEEEEecccChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEecC
Q 047066          104 NNYAYDRMIGRGGYGTVFLGSL-SDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEFV  182 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~  182 (256)
                      .+|++.+.||.|++|.||++.. .+++.+++|.+........+.+.+|+.+++.++|||++++++.+...+..++++||+
T Consensus        19 ~~y~~~~~lg~g~~g~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~   98 (296)
T cd06655          19 KKYTRYEKIGQGASGTVFTAIDVATGQEVAIKQINLQKQPKKELIINEILVMKELKNPNIVNFLDSFLVGDELFVVMEYL   98 (296)
T ss_pred             ceEEEEEEEecCCCeEEEEEEEcCCCcEEEEEEEecccCchHHHHHHHHHHHHhcCCCceeeeeeeEecCceEEEEEEec
Confidence            5689999999999999999986 478899999886555445577889999999999999999999999999999999999


Q ss_pred             CCCCC---------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceeeeeeee
Q 047066          183 KLPTI---------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQG  240 (256)
Q Consensus       183 ~~~~l---------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~~~~G  240 (256)
                      ++++|         ++.....++.+++             +||+|+||+++.++.+||+|||++......... .....|
T Consensus        99 ~~~~L~~~~~~~~l~~~~~~~i~~~l~~al~~LH~~~i~H~dL~p~Nili~~~~~~kl~dfg~~~~~~~~~~~-~~~~~~  177 (296)
T cd06655          99 AGGSLTDVVTETCMDEAQIAAVCRECLQALEFLHANQVIHRDIKSDNVLLGMDGSVKLTDFGFCAQITPEQSK-RSTMVG  177 (296)
T ss_pred             CCCcHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCCEEEccCccchhccccccc-CCCcCC
Confidence            88765         4455555555544             699999999999999999999999876543222 122347


Q ss_pred             cccc----cccccCCCCCCC
Q 047066          241 TLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       241 t~~y----~~~~~~~t~ksD  256 (256)
                      ++.|    .+.+..++.++|
T Consensus       178 ~~~y~aPE~~~~~~~~~~~D  197 (296)
T cd06655         178 TPYWMAPEVVTRKAYGPKVD  197 (296)
T ss_pred             CccccCcchhcCCCCCchhh
Confidence            7777    455566777776

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd05039 PTKc_Csk_like Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

Probab=99.82  E-value=2.1e-19  Score=147.98  Aligned_cols=149  Identities=20%  Similarity=0.378  Sum_probs=116.6

Q ss_pred             hcCCCcccceeeeeCceEEEEEEECCCcEEEEEEecccChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEec
Q 047066          102 ATNNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEF  181 (256)
Q Consensus       102 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~  181 (256)
                      ..++|++.+.||.|+||.||++.. .++.+++|.+..... ..+++.+|+.+++.++|+|++++++++...+..+++|||
T Consensus         4 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~v~iK~~~~~~~-~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~   81 (256)
T cd05039           4 NSKELKLGATIGKGEFGDVMLGDY-RGQKVAVKCLKDDST-AAQAFLAEASVMTTLRHPNLVQLLGVVLQGNPLYIVTEY   81 (256)
T ss_pred             ChhhccceeeeecCCCceEEEEEe-cCcEEEEEEeccchh-HHHHHHHHHHHHHhcCCcceeeeEEEEcCCCCeEEEEEe
Confidence            456788899999999999999987 478899999875544 457789999999999999999999999988999999999


Q ss_pred             CCCCCC------------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceeee
Q 047066          182 VKLPTI------------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLST  236 (256)
Q Consensus       182 ~~~~~l------------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~  236 (256)
                      +++++|            ++.....++.|++             +||+|+||+++.++.+||+|||+++.......    
T Consensus        82 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh~~~i~H~di~p~Nili~~~~~~~l~d~g~~~~~~~~~~----  157 (256)
T cd05039          82 MAKGSLVDYLRSRGRAVITLAQQLGFALDVCEGMEYLEEKNFVHRDLAARNVLVSEDLVAKVSDFGLAKEASQGQD----  157 (256)
T ss_pred             cCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCccchhcccceEEEeCCCCEEEcccccccccccccc----
Confidence            987554            4445555555554             69999999999999999999999987643221    


Q ss_pred             eeeecccc----cccccCCCCCCC
Q 047066          237 MVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       237 ~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      ...++..|    ++..+.++.++|
T Consensus       158 ~~~~~~~~~ape~~~~~~~~~~~D  181 (256)
T cd05039         158 SGKLPVKWTAPEALREKKFSTKSD  181 (256)
T ss_pred             cCCCcccccCchhhcCCcCCcHHH
Confidence            11233344    344556666665

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk

>PF00069 Pkinase: Protein kinase domain Protein kinase; unclassified specificity

Probab=99.82  E-value=2.4e-19  Score=147.56  Aligned_cols=150  Identities=27%  Similarity=0.391  Sum_probs=116.1

Q ss_pred             CcccceeeeeCceEEEEEEEC-CCcEEEEEEecccChhHH--HHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEecC
Q 047066          106 YAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVYQSQI--EQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEFV  182 (256)
Q Consensus       106 ~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~--~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~  182 (256)
                      |++.+.||+|+||.||++... +++.+|+|..........  ....+|+.+++.++||||+++.+++...+..+++||++
T Consensus         1 y~~~~~lg~G~~g~v~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~~v~~~~   80 (260)
T PF00069_consen    1 YRLVKKLGSGGFGTVYKAKNKKNGQKVAVKIIDKSEIEEEEREENIREIKILRRLRHPNIVQILDVFQDDNYLYIVMEYC   80 (260)
T ss_dssp             EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEESTTHHHHHHHHHHHHHHHHHHHTBTTBCHEEEEEEESSEEEEEEEEE
T ss_pred             CEEeEEEEeCCCEEEEEEEECCCCeEEEEEEeccccccccccchhhhhhhcccccccccccccccccccccccccccccc
Confidence            567889999999999999976 567899999876653332  23466999999999999999999999999999999999


Q ss_pred             CCCCC----------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceeeeeee
Q 047066          183 KLPTI----------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQ  239 (256)
Q Consensus       183 ~~~~l----------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~~~~  239 (256)
                      .+++|          +......++.+++             +||||+||++++++.++|+|||.+....... .......
T Consensus        81 ~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~L~~Lh~~~i~H~dikp~NIl~~~~~~~~l~Dfg~~~~~~~~~-~~~~~~~  159 (260)
T PF00069_consen   81 PGGSLQDYLQKNKPLSEEEILKIAYQILEALAYLHSKGIVHRDIKPENILLDENGEVKLIDFGSSVKLSENN-ENFNPFV  159 (260)
T ss_dssp             TTEBHHHHHHHHSSBBHHHHHHHHHHHHHHHHHHHHTTEEESSBSGGGEEESTTSEEEESSGTTTEESTSTT-SEBSSSS
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccc
Confidence            98655          3444456666655             5999999999999999999999998652222 2233445


Q ss_pred             ecccc----ccc-ccCCCCCCC
Q 047066          240 GTLGY----YLH-TSQGTLNKE  256 (256)
Q Consensus       240 Gt~~y----~~~-~~~~t~ksD  256 (256)
                      ||+.|    ... +..++.++|
T Consensus       160 ~~~~y~aPE~~~~~~~~~~~~D  181 (260)
T PF00069_consen  160 GTPEYMAPEVLQQGKKYTRKSD  181 (260)
T ss_dssp             SSGGGSCHHHHTTTSSBSTHHH
T ss_pred             cccccccccccccccccccccc
Confidence            88888    333 455666554

Serine/Threonine protein kinases, catalytic domain Tyrosine kinase, catalytic domain; InterPro: IPR017442 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Eukaryotic protein kinases [, , , , ] are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. There are a number of conserved regions in the catalytic domain of protein kinases. In the N-terminal extremity of the catalytic domain there is a glycine-rich stretch of residues in the vicinity of a lysine residue, which has been shown to be involved in ATP binding. In the central part of the catalytic domain there is a conserved aspartic acid residue which is important for the catalytic activity of the enzyme []. This entry includes protein kinases from eukaryotes and viruses and may include some bacterial hits too.; GO: 0004672 protein kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 3GC7_A 3ZYA_A 3MPT_A 3NEW_A 3MVM_A 1R3C_A 2FST_X 3E93_A 3HV5_B 3OCG_A ....

>PRK09188 serine/threonine protein kinase; Provisional

Probab=99.82  E-value=2.8e-19  Score=153.38  Aligned_cols=132  Identities=16%  Similarity=0.135  Sum_probs=98.9

Q ss_pred             hHHHHhhcCCCcccceeeeeCceEEEEEEEC--CCcEEEEEEeccc-----ChhHHHHHHHHHHHHHhCCCCcccceeeE
Q 047066           96 AGELKIATNNYAYDRMIGRGGYGTVFLGSLS--DNKAIAIKKSRIV-----YQSQIEQCINKVVVLSQINHRNVVGLLGC  168 (256)
Q Consensus        96 ~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~--~~~~vavK~~~~~-----~~~~~~~~~~E~~~l~~l~h~niv~l~~~  168 (256)
                      .+......++|.+.+.||+|+||+||+|..+  +++.+|+|++...     .....+.+.+|+.+|+.++|+|+++.+..
T Consensus        10 ~~~~~~~~~~Y~~~~~IG~G~fg~Vy~a~~~~~~~~~vAiK~~~~~~~~~~~~~~~~~~~~E~~iL~~L~h~~iv~~l~~   89 (365)
T PRK09188         10 GDQIPALSARFVETAVLKRDVFSTVERGYFAGDPGTARAVRRRVSEVPWWSKPLARHLAAREIRALKTVRGIGVVPQLLA   89 (365)
T ss_pred             ccccccccCCceEccEEeecCcEEEEEEEEcCCCCeEEEEEEecccccccccHHHHHHHHHHHHHHHhccCCCCCcEEEE
Confidence            3344455678999999999999999999864  5677899976432     22335678999999999999999853322


Q ss_pred             EEECCEEEEEEecCCCCCCCHHH---HHHHHHH-------------HHhcc-CCCcEEEcCCCcEEEEecCCceecCCC
Q 047066          169 CLETEVPLLVNEFVKLPTISWEV---RIRIAAE-------------TAEDI-KSINILLDDNYTTKVCDFGASKLVPID  230 (256)
Q Consensus       169 ~~~~~~~~lv~e~~~~~~l~~~~---~~~~~~~-------------i~rdl-k~~NiLi~~~~~~ki~DFGla~~~~~~  230 (256)
                         .+..+++|||+++++|....   ...+..+             +|||| ||+|||++.++.+||+|||+|+.+...
T Consensus        90 ---~~~~~LVmE~~~G~~L~~~~~~~~~~~~~~i~~aL~~lH~~gIiHrDL~KP~NILv~~~~~ikLiDFGlA~~~~~~  165 (365)
T PRK09188         90 ---TGKDGLVRGWTEGVPLHLARPHGDPAWFRSAHRALRDLHRAGITHNDLAKPQNWLMGPDGEAAVIDFQLASVFRRR  165 (365)
T ss_pred             ---cCCcEEEEEccCCCCHHHhCccchHHHHHHHHHHHHHHHHCCCeeCCCCCcceEEEcCCCCEEEEECccceecccC
Confidence               24579999999998774211   1122222             33799 999999999999999999999977543

>PF07714 Pkinase_Tyr: Protein tyrosine kinase Protein kinase; unclassified specificity

Probab=99.81  E-value=5.8e-20  Score=151.98  Aligned_cols=149  Identities=29%  Similarity=0.452  Sum_probs=112.0

Q ss_pred             ccceeeeeCceEEEEEEEC-----CCcEEEEEEecccC-hhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEec
Q 047066          108 YDRMIGRGGYGTVFLGSLS-----DNKAIAIKKSRIVY-QSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEF  181 (256)
Q Consensus       108 ~~~~lg~G~~g~V~~~~~~-----~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~  181 (256)
                      +.+.||+|.||.||+|.++     .+..|+||.+.... ....+.+.+|++.+++++||||++++|++...+..++++||
T Consensus         3 ~~~~ig~G~fg~v~~~~~~~~~~~~~~~V~vk~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~g~~~~~~~~~lv~e~   82 (259)
T PF07714_consen    3 LIKQIGEGSFGKVYRAEWKQKDNDKNQPVAVKILKPSSSEEEEEEFLNEIQILRKLRHPNIVKLYGFCIENEPLFLVMEY   82 (259)
T ss_dssp             EEEEEEEESSEEEEEEEEESTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTHSBTTBE-EEEEEESSSSEEEEEE-
T ss_pred             EeeEEccCCCcEEEEEEEEcccCCCCEEEEEEEeccccccccceeeeecccccccccccccccccccccccccccccccc
Confidence            4578999999999999975     25689999986543 44578899999999999999999999999988889999999


Q ss_pred             CCCCC------------CCHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCcee-e
Q 047066          182 VKLPT------------ISWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQL-S  235 (256)
Q Consensus       182 ~~~~~------------l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~-~  235 (256)
                      +.+|+            +++..+..++.|++             +||+++||++++++.+||+|||++.......... .
T Consensus        83 ~~~g~L~~~L~~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~~iiH~~l~~~nill~~~~~~Kl~~f~~~~~~~~~~~~~~~  162 (259)
T PF07714_consen   83 CPGGSLDDYLKSKNKEPLSEQQRLSIAIQIAEALSYLHSNNIIHGNLSPSNILLDSNGQVKLSDFGLSRPISEKSKYKND  162 (259)
T ss_dssp             -TTEBHHHHHHHTCTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEETTTEEEEESTTTGEETTTSSSEEES
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            98754            45667777777777             4999999999999999999999998873332221 1


Q ss_pred             eeeeecccc----cccccCCCCCCC
Q 047066          236 TMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       236 ~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      ....+...|    .+....+|.++|
T Consensus       163 ~~~~~~~~~~aPE~~~~~~~~~ksD  187 (259)
T PF07714_consen  163 SSQQLPLRYLAPEVLKDGEYTKKSD  187 (259)
T ss_dssp             TTSESGGGGS-HHHHHHSEESHHHH
T ss_pred             ccccccccccccccccccccccccc
Confidence            222355555    334455565554

Tyrosine kinase, catalytic domain; InterPro: IPR001245 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. ; GO: 0004672 protein kinase activity, 0006468 protein phosphorylation; PDB: 2HYY_C 1OPL_A 2V7A_A 2G2H_B 2G1T_A 3PYY_A 3CS9_D 2HZI_A 2E2B_A 2HIW_A ....

>cd06613 STKc_MAP4K3_like Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases

Probab=99.81  E-value=2.9e-19  Score=147.37  Aligned_cols=153  Identities=24%  Similarity=0.292  Sum_probs=119.2

Q ss_pred             cCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEec
Q 047066          103 TNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEF  181 (256)
Q Consensus       103 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~  181 (256)
                      .++|++.+.||+|+||.||++... ++..+++|..........+.+.+|+.+++.++|||++++++.+...+..+++|||
T Consensus         2 ~~~~~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~l~~e~   81 (262)
T cd06613           2 QEDYELIQRIGSGTYGDVYKARDIATGELVAIKVIKLEPGDDFEIIQQEISMLKECRHPNIVAYFGSYLRRDKLWIVMEY   81 (262)
T ss_pred             ccceEEEEEecCCCceEEEEeEecCCCCEEEEEEEEcCchhhHHHHHHHHHHHHhCCCCChhceEEEEEeCCEEEEEEeC
Confidence            468899999999999999999975 5788999988766555667899999999999999999999999999999999999


Q ss_pred             CCCCCC-----------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceeeee
Q 047066          182 VKLPTI-----------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTM  237 (256)
Q Consensus       182 ~~~~~l-----------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~~  237 (256)
                      +.++++           +......++.|++             +||+|+||++++++.+||+|||++........ ....
T Consensus        82 ~~~~~l~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lh~~~i~h~dl~p~ni~i~~~~~~~l~d~g~~~~~~~~~~-~~~~  160 (262)
T cd06613          82 CGGGSLQDIYQVTRGPLSELQIAYVCRETLKGLAYLHETGKIHRDIKGANILLTEDGDVKLADFGVSAQLTATIA-KRKS  160 (262)
T ss_pred             CCCCcHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHhCCceecCCChhhEEECCCCCEEECccccchhhhhhhh-cccc
Confidence            987665           3333334444444             59999999999999999999999987643221 1223


Q ss_pred             eeecccc----ccccc---CCCCCCC
Q 047066          238 VQGTLGY----YLHTS---QGTLNKE  256 (256)
Q Consensus       238 ~~Gt~~y----~~~~~---~~t~ksD  256 (256)
                      ..|+..|    .....   .++.++|
T Consensus       161 ~~~~~~y~~Pe~~~~~~~~~~~~~~D  186 (262)
T cd06613         161 FIGTPYWMAPEVAAVERKGGYDGKCD  186 (262)
T ss_pred             ccCCccccCchhhcccccCCcCchhh
Confidence            3467777    33333   5666666

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activ

>cd06645 STKc_MAP4K3 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 3

Probab=99.81  E-value=2.6e-19  Score=148.31  Aligned_cols=153  Identities=23%  Similarity=0.300  Sum_probs=119.1

Q ss_pred             cCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEec
Q 047066          103 TNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEF  181 (256)
Q Consensus       103 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~  181 (256)
                      .++|++.+.||+|+||.||++... ++..+++|.++.........+.+|+.+++.++||||+++++.+...+..++++||
T Consensus         8 ~~~~~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~e~~~~~~l~h~~ii~~~~~~~~~~~~~lv~e~   87 (267)
T cd06645           8 QEDFELIQRIGSGTYGDVYKARNVNTGELAAIKVIKLEPGEDFAVVQQEIIMMKDCKHSNIVAYFGSYLRRDKLWICMEF   87 (267)
T ss_pred             HHHHHHHHHhCCCCCeEEEEEEEcCCCcEEEEEEEecCchhHHHHHHHHHHHHHhCCCCCeeeEEEEEEeCCEEEEEEec
Confidence            357888899999999999999864 6889999988765555556788999999999999999999999999999999999


Q ss_pred             CCCCCC----------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceeeeee
Q 047066          182 VKLPTI----------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMV  238 (256)
Q Consensus       182 ~~~~~l----------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~~~  238 (256)
                      +++++|          +......++.+++             +||+|+||+++.++.+||+|||++........ .....
T Consensus        88 ~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~nili~~~~~~~l~dfg~~~~~~~~~~-~~~~~  166 (267)
T cd06645          88 CGGGSLQDIYHVTGPLSESQIAYVSRETLQGLYYLHSKGKMHRDIKGANILLTDNGHVKLADFGVSAQITATIA-KRKSF  166 (267)
T ss_pred             cCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEECCCCCEEECcceeeeEccCccc-ccccc
Confidence            988665          3344444444443             69999999999999999999999987643221 12234


Q ss_pred             eecccc----cc---cccCCCCCCC
Q 047066          239 QGTLGY----YL---HTSQGTLNKE  256 (256)
Q Consensus       239 ~Gt~~y----~~---~~~~~t~ksD  256 (256)
                      .||+.|    .+   ..+.++.++|
T Consensus       167 ~~~~~y~aPE~~~~~~~~~~~~~~D  191 (267)
T cd06645         167 IGTPYWMAPEVAAVERKGGYNQLCD  191 (267)
T ss_pred             cCcccccChhhhccccCCCCCchhh
Confidence            588888    22   2445677776

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd05051 PTKc_DDR Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors

Probab=99.81  E-value=3.5e-19  Score=149.73  Aligned_cols=155  Identities=21%  Similarity=0.333  Sum_probs=119.0

Q ss_pred             hcCCCcccceeeeeCceEEEEEEECC-----------------CcEEEEEEecccC-hhHHHHHHHHHHHHHhCCCCccc
Q 047066          102 ATNNYAYDRMIGRGGYGTVFLGSLSD-----------------NKAIAIKKSRIVY-QSQIEQCINKVVVLSQINHRNVV  163 (256)
Q Consensus       102 ~~~~~~~~~~lg~G~~g~V~~~~~~~-----------------~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv  163 (256)
                      +.++|++.+.||+|+||.||++....                 +..+|+|.+.... ....+.+.+|+.++++++|||++
T Consensus         3 ~~~~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~   82 (296)
T cd05051           3 PRQPLNFVEKLGEGQFGEVHLCEADGLQDFSEKAFAENDNADAPVLVAVKVLRPDASDNAREDFLKEVKILSRLSDPNIA   82 (296)
T ss_pred             chhhCcccccccCCCCccEEEEEeccCCcccccccccccccCCceeEEEEEecCccCHHHHHHHHHHHHHHHhcCCCCEe
Confidence            35688999999999999999987532                 2458999876543 44557889999999999999999


Q ss_pred             ceeeEEEECCEEEEEEecCCCCCC---------------------CHHHHHHHHHHHH-------------hccCCCcEE
Q 047066          164 GLLGCCLETEVPLLVNEFVKLPTI---------------------SWEVRIRIAAETA-------------EDIKSINIL  209 (256)
Q Consensus       164 ~l~~~~~~~~~~~lv~e~~~~~~l---------------------~~~~~~~~~~~i~-------------rdlk~~NiL  209 (256)
                      ++++++...+..++++||+++++|                     ++.....++.+++             +||||+||+
T Consensus        83 ~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~al~~LH~~~i~H~dlkp~Nil  162 (296)
T cd05051          83 RLLGVCTVDPPLCMIMEYMENGDLNQFLQKHVAETSGLACNSKSLSFSTLLYMATQIASGMRYLESLNFVHRDLATRNCL  162 (296)
T ss_pred             EEEEEEecCCCcEEEEecCCCCCHHHHHHhcccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHcCccccccchhcee
Confidence            999999999999999999987643                     4444455555543             699999999


Q ss_pred             EcCCCcEEEEecCCceecCCCCcee-eeeeeecccc----cccccCCCCCCC
Q 047066          210 LDDNYTTKVCDFGASKLVPIDETQL-STMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       210 i~~~~~~ki~DFGla~~~~~~~~~~-~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      ++.++.++|+|||+++......... .....+++.|    ...++.++.++|
T Consensus       163 i~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~D  214 (296)
T cd05051         163 VGKNYTIKIADFGMSRNLYSSDYYRVQGRAPLPIRWMAWESVLLGKFTTKSD  214 (296)
T ss_pred             ecCCCceEEccccceeecccCcceeecCcCCCCceecCHHHhhcCCCCccch
Confidence            9999999999999998764433221 2233456677    445567788877

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linke

>cd08219 STKc_Nek3 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3

Probab=99.81  E-value=8.3e-19  Score=144.32  Aligned_cols=151  Identities=23%  Similarity=0.332  Sum_probs=116.9

Q ss_pred             CCcccceeeeeCceEEEEEEEC-CCcEEEEEEeccc-ChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEecC
Q 047066          105 NYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIV-YQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEFV  182 (256)
Q Consensus       105 ~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~  182 (256)
                      +|++.+.||+|+||.||++... ++..+++|.++.. .....+.+.+|+.+++.++|||++++.+.+.+.+..++++||+
T Consensus         1 ~y~~~~~lg~g~~g~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~   80 (255)
T cd08219           1 QYNVLRVVGEGSFGRALLVQHVNSDQKYAMKEIRLPKSSSAVEDSRKEAVLLAKMKHPNIVAFKESFEADGHLYIVMEYC   80 (255)
T ss_pred             CceEEEEeeccCCeEEEEEEEcCCCceEEEEEEEcCcchHHHHHHHHHHHHHHhCCCCCcceEEEEEEECCEEEEEEeeC
Confidence            4778899999999999999865 6889999987543 3344567889999999999999999999999999999999999


Q ss_pred             CCCCC------------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceeeee
Q 047066          183 KLPTI------------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTM  237 (256)
Q Consensus       183 ~~~~l------------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~~  237 (256)
                      +++++            +......++.+++             +||+|+||++++++.++++|||++......... ...
T Consensus        81 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~~~i~H~dl~p~nili~~~~~~~l~dfg~~~~~~~~~~~-~~~  159 (255)
T cd08219          81 DGGDLMQKIKLQRGKLFPEDTILQWFVQMCLGVQHIHEKRVLHRDIKSKNIFLTQNGKVKLGDFGSARLLTSPGAY-ACT  159 (255)
T ss_pred             CCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhhCCcccCCCCcceEEECCCCcEEEcccCcceeecccccc-ccc
Confidence            88654            3333344445544             599999999999999999999999876543221 223


Q ss_pred             eeecccc----cccccCCCCCCC
Q 047066          238 VQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       238 ~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      ..|++.|    ...+..++.++|
T Consensus       160 ~~~~~~~~aPE~~~~~~~~~~~D  182 (255)
T cd08219         160 YVGTPYYVPPEIWENMPYNNKSD  182 (255)
T ss_pred             ccCCccccCHHHHccCCcCchhh
Confidence            4577777    444555666666

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activati

>PHA03210 serine/threonine kinase US3; Provisional

Probab=99.81  E-value=1e-19  Score=163.89  Aligned_cols=153  Identities=16%  Similarity=0.193  Sum_probs=111.0

Q ss_pred             cCCCcccceeeeeCceEEEEEEECC--CcEEEEE------------------EecccChhHHHHHHHHHHHHHhCCCCcc
Q 047066          103 TNNYAYDRMIGRGGYGTVFLGSLSD--NKAIAIK------------------KSRIVYQSQIEQCINKVVVLSQINHRNV  162 (256)
Q Consensus       103 ~~~~~~~~~lg~G~~g~V~~~~~~~--~~~vavK------------------~~~~~~~~~~~~~~~E~~~l~~l~h~ni  162 (256)
                      .++|++.+.||+|+||+||+|..+.  +...+.|                  ... ........+.+|+.+++.++||||
T Consensus       147 ~~~Y~ii~~LG~G~fG~Vyl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~-~~~~~~~~~~~Ei~il~~l~HpnI  225 (501)
T PHA03210        147 LAHFRVIDDLPAGAFGKIFICALRASTEEAEARRGVNSTNQGKPKCERLIAKRVK-AGSRAAIQLENEILALGRLNHENI  225 (501)
T ss_pred             hhccEEEeEecCCCCcceEEEEEeccchhhhhhhccccccccchhhhhhHhHHhh-cchHHHHHHHHHHHHHHhCCCCCc
Confidence            4689999999999999999987532  2222211                  111 112234568899999999999999


Q ss_pred             cceeeEEEECCEEEEEEecCCCCCC--------------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCc
Q 047066          163 VGLLGCCLETEVPLLVNEFVKLPTI--------------SWEVRIRIAAETA-------------EDIKSINILLDDNYT  215 (256)
Q Consensus       163 v~l~~~~~~~~~~~lv~e~~~~~~l--------------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~  215 (256)
                      +++++++...+..++++|++.+..+              .......++.|++             |||||+|||++.++.
T Consensus       226 v~l~~~~~~~~~~~lv~e~~~~~l~~~l~~~~~~~~~~~~~~~~~~i~~ql~~aL~yLH~~gIiHrDLKP~NILl~~~~~  305 (501)
T PHA03210        226 LKIEEILRSEANTYMITQKYDFDLYSFMYDEAFDWKDRPLLKQTRAIMKQLLCAVEYIHDKKLIHRDIKLENIFLNCDGK  305 (501)
T ss_pred             CcEeEEEEECCeeEEEEeccccCHHHHHhhccccccccccHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEECCCCC
Confidence            9999999999999999998754221              1222333444433             799999999999999


Q ss_pred             EEEEecCCceecCCCCceeeeeeeecccc----cccccCCCCCCC
Q 047066          216 TKVCDFGASKLVPIDETQLSTMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       216 ~ki~DFGla~~~~~~~~~~~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      +||+|||+++.+............||+.|    .+.+..++.++|
T Consensus       306 vkL~DFGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~D  350 (501)
T PHA03210        306 IVLGDFGTAMPFEKEREAFDYGWVGTVATNSPEILAGDGYCEITD  350 (501)
T ss_pred             EEEEeCCCceecCcccccccccccCCcCCCCchhhcCCCCCcHHH
Confidence            99999999998765443333345699988    555667777776

>KOG0199 consensus ACK and related non-receptor tyrosine kinases [Signal transduction mechanisms]

Probab=99.81  E-value=7.7e-20  Score=161.97  Aligned_cols=156  Identities=20%  Similarity=0.335  Sum_probs=122.8

Q ss_pred             HhhcCCCcccceeeeeCceEEEEEEEC--CCc--EEEEEEecccChh-HHHHHHHHHHHHHhCCCCcccceeeEEEECCE
Q 047066          100 KIATNNYAYDRMIGRGGYGTVFLGSLS--DNK--AIAIKKSRIVYQS-QIEQCINKVVVLSQINHRNVVGLLGCCLETEV  174 (256)
Q Consensus       100 ~~~~~~~~~~~~lg~G~~g~V~~~~~~--~~~--~vavK~~~~~~~~-~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~  174 (256)
                      .|+.+..++.+.||+|+||.|++|.|.  .|+  .||||+++..... ...+|++|+.+|.+|+|+|+++|||...+ ..
T Consensus       106 lIpee~i~l~e~LG~GsFgvV~rg~Wt~psgk~V~VAVKclr~d~l~~~mddflrEas~M~~L~H~hliRLyGvVl~-qp  184 (1039)
T KOG0199|consen  106 LIPEEQIKLYELLGEGSFGVVKRGTWTQPSGKHVNVAVKCLRDDSLNAIMDDFLREASHMLKLQHPHLIRLYGVVLD-QP  184 (1039)
T ss_pred             eccHHHHHHHHHhcCcceeeEeeccccCCCCcEEeEEEEeccCCccchhHHHHHHHHHHHHhccCcceeEEeeeecc-ch
Confidence            455566778899999999999999975  343  7899999876543 55889999999999999999999999998 66


Q ss_pred             EEEEEecCCCCCCCHHH------------HHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCC
Q 047066          175 PLLVNEFVKLPTISWEV------------RIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPI  229 (256)
Q Consensus       175 ~~lv~e~~~~~~l~~~~------------~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~  229 (256)
                      ..+|+|++..|+|-...            .+.++.|||             |||.++|+|+-....+||+||||.+-+..
T Consensus       185 ~mMV~ELaplGSLldrLrka~~~~llv~~Lcdya~QiA~aM~YLeskrlvHRDLAARNlllasprtVKI~DFGLmRaLg~  264 (1039)
T KOG0199|consen  185 AMMVFELAPLGSLLDRLRKAKKAILLVSRLCDYAMQIAKAMQYLESKRLVHRDLAARNLLLASPRTVKICDFGLMRALGE  264 (1039)
T ss_pred             hhHHhhhcccchHHHHHhhccccceeHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhheecccceeeeecccceeccCC
Confidence            89999999998874333            234555555             79999999999999999999999999876


Q ss_pred             CCceee-e-eeeecccc----cccccCCCCCCC
Q 047066          230 DETQLS-T-MVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       230 ~~~~~~-~-~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      ++.... . ...-...|    .+....|+.+||
T Consensus       265 ned~Yvm~p~rkvPfAWCaPEsLrh~kFShaSD  297 (1039)
T KOG0199|consen  265 NEDMYVMAPQRKVPFAWCAPESLRHRKFSHASD  297 (1039)
T ss_pred             CCcceEecCCCcCcccccCHhHhccccccccch
Confidence            655431 1 11112233    788899999988

>cd08221 STKc_Nek9 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9

Probab=99.81  E-value=5e-19  Score=145.65  Aligned_cols=151  Identities=23%  Similarity=0.383  Sum_probs=118.2

Q ss_pred             CCcccceeeeeCceEEEEEEEC-CCcEEEEEEeccc--ChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEec
Q 047066          105 NYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIV--YQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEF  181 (256)
Q Consensus       105 ~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~  181 (256)
                      +|+..+.||.|+||.||.++.. ++..+++|.+...  ......++.+|+.++++++|+||+++++++...+..+++|||
T Consensus         1 ~y~~~~~ig~g~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~~~~e~   80 (256)
T cd08221           1 HYIPIRVLGKGAFGEATLYRRTEDDSLVVWKEVNLTRLSEKERRDALNEIVILSLLQHPNIIAYYNHFMDDNTLLIEMEY   80 (256)
T ss_pred             CceEeeEecccCCceEEEEEEcCCCcEEEEEEEeecccchhHHHHHHHHHHHHHhCCCCCeeEEEeEEecCCeEEEEEEe
Confidence            4788899999999999999854 6889999987543  344556789999999999999999999999999999999999


Q ss_pred             CCCCCC------------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceeee
Q 047066          182 VKLPTI------------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLST  236 (256)
Q Consensus       182 ~~~~~l------------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~  236 (256)
                      +++++|            ++.....++.+++             +||+|+||++++++.+||+|||++........ ...
T Consensus        81 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~i~h~dl~p~ni~~~~~~~~kl~d~~~~~~~~~~~~-~~~  159 (256)
T cd08221          81 ANGGTLYDKIVRQKGQLFEEEMVLWYLFQIVSAVSYIHKAGILHRDIKTLNIFLTKAGLIKLGDFGISKILGSEYS-MAE  159 (256)
T ss_pred             cCCCcHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHhCCccccCCChHhEEEeCCCCEEECcCcceEEcccccc-ccc
Confidence            988655            3333344444433             69999999999999999999999987654432 223


Q ss_pred             eeeecccc----cccccCCCCCCC
Q 047066          237 MVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       237 ~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      ...|++.|    ...+..++.++|
T Consensus       160 ~~~~~~~y~ape~~~~~~~~~~~D  183 (256)
T cd08221         160 TVVGTPYYMSPELCQGVKYNFKSD  183 (256)
T ss_pred             ccCCCccccCHhhcCCCCCCCcch
Confidence            34588888    444555677776

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associa

>cd08224 STKc_Nek6_Nek7 Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7

Probab=99.81  E-value=6.2e-19  Score=145.78  Aligned_cols=152  Identities=22%  Similarity=0.387  Sum_probs=119.3

Q ss_pred             CCCcccceeeeeCceEEEEEEEC-CCcEEEEEEeccc---ChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEE
Q 047066          104 NNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIV---YQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVN  179 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~  179 (256)
                      ++|++.+.||+|++|.||+|... +++.+++|.++..   .......+.+|++++++++|+|++++++.+...+..+++|
T Consensus         2 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~ei~~l~~~~~~~i~~~~~~~~~~~~~~lv~   81 (267)
T cd08224           2 GNFKIEKKIGKGQFSVVYKAICLLDGRVVALKKVQIFEMMDAKARQDCLKEIDLLKQLDHPNVIKYLASFIENNELNIVL   81 (267)
T ss_pred             CceeeeeeeccCCceEEEEEEEcCCCCEEEEEEeecccccchhhHHHHHHHHHHHHhCCCCCeeeeeeeeecCCeEEEEE
Confidence            57889999999999999999976 7899999987532   2334567899999999999999999999999999999999


Q ss_pred             ecCCCCCCC--------------HHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCc
Q 047066          180 EFVKLPTIS--------------WEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDET  232 (256)
Q Consensus       180 e~~~~~~l~--------------~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~  232 (256)
                      ||+++++|.              +.....++.+++             +||+|+||+++.++.++|+|||++..+.....
T Consensus        82 e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~i~h~dl~p~nil~~~~~~~~l~d~~~~~~~~~~~~  161 (267)
T cd08224          82 ELADAGDLSRMIKHFKKQKRLIPERTIWKYFVQLCSALEHMHSKRIMHRDIKPANVFITATGVVKLGDLGLGRFFSSKTT  161 (267)
T ss_pred             ecCCCCCHHHHHHHhcccCCCcCHHHHHHHHHHHHHHHHHHHhCCEecCCcChhhEEECCCCcEEEeccceeeeccCCCc
Confidence            999987653              333334444433             69999999999999999999999987654322


Q ss_pred             eeeeeeeecccc----cccccCCCCCCC
Q 047066          233 QLSTMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       233 ~~~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      . .....|++.|    ...+..++.++|
T Consensus       162 ~-~~~~~~~~~y~apE~~~~~~~~~~~D  188 (267)
T cd08224         162 A-AHSLVGTPYYMSPERIHENGYNFKSD  188 (267)
T ss_pred             c-cceecCCccccCHHHhccCCCCchhc
Confidence            2 2234577777    455666777776

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may a

>cd06643 STKc_SLK Catalytic domain of the Protein Serine/Threonine Kinase, Ste20-like kinase

Probab=99.81  E-value=5.2e-19  Score=147.83  Aligned_cols=150  Identities=19%  Similarity=0.215  Sum_probs=116.6

Q ss_pred             CcccceeeeeCceEEEEEEEC-CCcEEEEEEecccChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEecCCC
Q 047066          106 YAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEFVKL  184 (256)
Q Consensus       106 ~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~~  184 (256)
                      |++.+.||+|+||.||++... ++..+++|.+........+.+.+|+++++.++|||++++++.+...+..++++||+++
T Consensus         7 ~~i~~~lg~g~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~ii~~~~~~~~~~~~~~v~e~~~~   86 (282)
T cd06643           7 WEIIGELGDGAFGKVYKAQNKETGVLAAAKVIDTKSEEELEDYMVEIDILASCDHPNIVKLLDAFYYENNLWILIEFCAG   86 (282)
T ss_pred             HHHHhhcccCCCeEEEEEEECCCCeEEEEEEeCCCCHHHHHHHHHHHHHHHHCCCCCeeeEEEEEeeCCEEEEEEEecCC
Confidence            566788999999999999975 5778899988766656667889999999999999999999999999999999999987


Q ss_pred             CCC-----------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceeeeeeee
Q 047066          185 PTI-----------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQG  240 (256)
Q Consensus       185 ~~l-----------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~~~~G  240 (256)
                      +++           ++.....++.+++             +||+|+||+++.++.+||+|||++........ ......|
T Consensus        87 ~~l~~~~~~~~~~l~~~~~~~~~~qi~~~L~~LH~~~i~H~dlkp~nili~~~~~~kl~dfg~~~~~~~~~~-~~~~~~~  165 (282)
T cd06643          87 GAVDAVMLELERPLTEPQIRVVCKQTLEALNYLHENKIIHRDLKAGNILFTLDGDIKLADFGVSAKNTRTIQ-RRDSFIG  165 (282)
T ss_pred             CcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCeeecCCCcccEEEccCCCEEEcccccccccccccc-ccccccc
Confidence            665           3344445555544             69999999999999999999999976533221 1223357


Q ss_pred             cccc----cc-----cccCCCCCCC
Q 047066          241 TLGY----YL-----HTSQGTLNKE  256 (256)
Q Consensus       241 t~~y----~~-----~~~~~t~ksD  256 (256)
                      |+.|    ++     ....++.++|
T Consensus       166 ~~~y~aPE~~~~~~~~~~~~~~~~D  190 (282)
T cd06643         166 TPYWMAPEVVMCETSKDRPYDYKAD  190 (282)
T ss_pred             cccccCHhhccccCCCCCCCCccch
Confidence            8878    22     2345666776

Serine/threonine kinases (STKs), Ste20-like kinase (SLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It acts as a MAPK kinase kinase (MAPKKK) by phosphorylating ASK1, resulting in the phosphorylation of p38. SLK also plays a role in mediating actin reorganization. It is part of a microtubule-associated complex that is targeted at adhesion sites, and is required in focal adhesion turnover and in regulating cell migration.

>cd08229 STKc_Nek7 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7

Probab=99.81  E-value=2.7e-19  Score=148.15  Aligned_cols=152  Identities=22%  Similarity=0.378  Sum_probs=118.4

Q ss_pred             CCCcccceeeeeCceEEEEEEEC-CCcEEEEEEeccc---ChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEE
Q 047066          104 NNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIV---YQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVN  179 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~  179 (256)
                      ++|++.+.||+|++|.||++... ++..+++|.+...   ......++.+|+.+++.++||||+++++++...+..++++
T Consensus         2 ~~y~~~~~ig~g~~g~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~~v~   81 (267)
T cd08229           2 ANFRIEKKIGRGQFSEVYRATCLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIKYYASFIEDNELNIVL   81 (267)
T ss_pred             chhhhhhhhcccCCeEEEEEeecCCCceEEEEeeeehhhhhHHHHHHHHHHHHHHHHccCCchhhhhheeEeCCeEEEEE
Confidence            46788899999999999999964 7889999977543   2334467889999999999999999999999999999999


Q ss_pred             ecCCCCCC--------------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCc
Q 047066          180 EFVKLPTI--------------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDET  232 (256)
Q Consensus       180 e~~~~~~l--------------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~  232 (256)
                      ||+++++|              ++.....++.+++             +||+|+||+++.++.++|+|||++........
T Consensus        82 e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~i~H~dl~p~nili~~~~~~~l~dfg~~~~~~~~~~  161 (267)
T cd08229          82 ELADAGDLSRMIKHFKKQKRLIPEKTVWKYFVQLCSALEHMHSRRVMHRDIKPANVFITATGVVKLGDLGLGRFFSSKTT  161 (267)
T ss_pred             EecCCCCHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEEcCCCCEEECcchhhhccccCCc
Confidence            99988665              3333444454444             59999999999999999999999987654332


Q ss_pred             eeeeeeeecccc----cccccCCCCCCC
Q 047066          233 QLSTMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       233 ~~~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      . .....|++.|    +..+..++.++|
T Consensus       162 ~-~~~~~~~~~~~ape~~~~~~~~~~~D  188 (267)
T cd08229         162 A-AHSLVGTPYYMSPERIHENGYNFKSD  188 (267)
T ss_pred             c-cccccCCcCccCHHHhcCCCccchhh
Confidence            2 1233477777    455666777776

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase.

>cd07868 STKc_CDK8 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 8

Probab=99.81  E-value=4.2e-19  Score=150.86  Aligned_cols=145  Identities=21%  Similarity=0.266  Sum_probs=108.3

Q ss_pred             ceeeeeCceEEEEEEEC---CCcEEEEEEecccChhHHHHHHHHHHHHHhCCCCcccceeeEEEE--CCEEEEEEecCCC
Q 047066          110 RMIGRGGYGTVFLGSLS---DNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLE--TEVPLLVNEFVKL  184 (256)
Q Consensus       110 ~~lg~G~~g~V~~~~~~---~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~--~~~~~lv~e~~~~  184 (256)
                      +.||+|+||.||+|..+   ++..+|+|.+....  ....+.+|+.++++++||||+++++.+..  ....++++||+.+
T Consensus         7 ~~lG~G~~g~Vy~~~~~~~~~~~~~aiK~~~~~~--~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~lv~e~~~~   84 (317)
T cd07868           7 CKVGRGTYGHVYKAKRKDGKDDRDYALKQIEGTG--ISMSACREIALLRELKHPNVISLQKVFLSHADRKVWLLFDYAEH   84 (317)
T ss_pred             cccccCCCeEEEEEEEccCCCCceEEEEEECCCC--CcHHHHHHHHHHHhcCCCCCcceeeeEecCCCcEEEEEEeccCC
Confidence            57999999999999864   46789999886432  22456789999999999999999998864  4568999999865


Q ss_pred             C------------------CCCHHHHHHHHHHHH-------------hccCCCcEEE----cCCCcEEEEecCCceecCC
Q 047066          185 P------------------TISWEVRIRIAAETA-------------EDIKSINILL----DDNYTTKVCDFGASKLVPI  229 (256)
Q Consensus       185 ~------------------~l~~~~~~~~~~~i~-------------rdlk~~NiLi----~~~~~~ki~DFGla~~~~~  229 (256)
                      .                  .++......++.|++             |||||+|||+    +.++.+||+|||+|+.+..
T Consensus        85 ~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~~~ivHrDlkp~Nil~~~~~~~~~~~kl~DfG~a~~~~~  164 (317)
T cd07868          85 DLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLHANWVLHRDLKPANILVMGEGPERGRVKIADMGFARLFNS  164 (317)
T ss_pred             CHHHHHHhcccccccCCcccCCHHHHHHHHHHHHHHHHHHHhCCEEcCCCCHHHEEEecCCCCcCcEEEeecCceeccCC
Confidence            2                  245555556666654             6999999999    4567899999999987654


Q ss_pred             CCce--eeeeeeecccc----cccc-cCCCCCCC
Q 047066          230 DETQ--LSTMVQGTLGY----YLHT-SQGTLNKE  256 (256)
Q Consensus       230 ~~~~--~~~~~~Gt~~y----~~~~-~~~t~ksD  256 (256)
                      +...  ......||+.|    .+.+ ..++.++|
T Consensus       165 ~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~D  198 (317)
T cd07868         165 PLKPLADLDPVVVTFWYRAPELLLGARHYTKAID  198 (317)
T ss_pred             CCccccccCCccccccccCCHHHcCCCCcCchhh
Confidence            3222  12335689988    3333 45777776

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK8 can act as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA p

>cd05091 PTKc_Ror2 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 2

Probab=99.81  E-value=2e-19  Score=150.35  Aligned_cols=153  Identities=18%  Similarity=0.261  Sum_probs=115.7

Q ss_pred             CCCcccceeeeeCceEEEEEEEC------CCcEEEEEEecccC-hhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEE
Q 047066          104 NNYAYDRMIGRGGYGTVFLGSLS------DNKAIAIKKSRIVY-QSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPL  176 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~V~~~~~~------~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~  176 (256)
                      .+|.+.+.||+|+||.||+|...      ++..+|+|.+.... ....+.+.+|+.++..++||||+++++++...+..+
T Consensus         5 ~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~l~h~~iv~~~~~~~~~~~~~   84 (283)
T cd05091           5 STVRFMEELGEDRFGKVYKGHLFGTAPGEQTQAVAIKTLKDKAEGPLREEFKHEAMMRSRLQHPNIVCLLGVVTKEQPLS   84 (283)
T ss_pred             HHHHHHHHhCCCCCCeEEEEEEecCCCCCceeEEEEEEccCCCCHHHHHHHHHHHHHHhcCCCCCcCeEEEEEcCCCceE
Confidence            45777889999999999999853      24789999887543 333467889999999999999999999999999999


Q ss_pred             EEEecCCCCCCC--------------------------HHHHHHHHHHHH-------------hccCCCcEEEcCCCcEE
Q 047066          177 LVNEFVKLPTIS--------------------------WEVRIRIAAETA-------------EDIKSINILLDDNYTTK  217 (256)
Q Consensus       177 lv~e~~~~~~l~--------------------------~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~k  217 (256)
                      +++||+.+++|.                          +.....++.|++             +||||+||++++++.+|
T Consensus        85 ~~~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~~aL~~lH~~gi~H~dlkp~Nil~~~~~~~k  164 (283)
T cd05091          85 MIFSYCSHSDLHEFLVMRSPHSDVGSTDDDKTVKSTLEPADFVHIVTQIAAGMEFLSSHHVVHKDLATRNVLVFDKLNVK  164 (283)
T ss_pred             EEEEcCCCCcHHHHHHhcCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHHHcCccccccchhheEecCCCceE
Confidence            999999776542                          223334444443             69999999999999999


Q ss_pred             EEecCCceecCCCCcee-eeeeeecccc----cccccCCCCCCC
Q 047066          218 VCDFGASKLVPIDETQL-STMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       218 i~DFGla~~~~~~~~~~-~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      |+|||+++.+....... .....+++.|    .+.++.++.++|
T Consensus       165 l~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~D  208 (283)
T cd05091         165 ISDLGLFREVYAADYYKLMGNSLLPIRWMSPEAIMYGKFSIDSD  208 (283)
T ss_pred             ecccccccccccchheeeccCccCCccccCHHHHhcCCCCcchh
Confidence            99999998764332211 1223356677    455677788777

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 2 (Ror2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd05094 PTKc_TrkC Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C

Probab=99.81  E-value=3.9e-19  Score=149.37  Aligned_cols=154  Identities=21%  Similarity=0.339  Sum_probs=118.8

Q ss_pred             cCCCcccceeeeeCceEEEEEEEC------CCcEEEEEEecccChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEE
Q 047066          103 TNNYAYDRMIGRGGYGTVFLGSLS------DNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPL  176 (256)
Q Consensus       103 ~~~~~~~~~lg~G~~g~V~~~~~~------~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~  176 (256)
                      ..+|.+.+.||+|+||.||+|...      ++..+++|.+..........+.+|++++++++||||+++++++...+..+
T Consensus         4 ~~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~   83 (291)
T cd05094           4 RRDIVLKRELGEGAFGKVFLAECYNLSPTKDKMLVAVKALKDPTLAARKDFQREAELLTNLQHEHIVKFYGVCGDGDPLI   83 (291)
T ss_pred             hHHeEEeeeecccCCCeEEEeEeeccCCCCcceeeEEEecCCccHHHHHHHHHHHHHHhcCCCCCcceEEEEEccCCceE
Confidence            356888899999999999999742      34568888877655555577899999999999999999999999999999


Q ss_pred             EEEecCCCCCC--------------------------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEE
Q 047066          177 LVNEFVKLPTI--------------------------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTK  217 (256)
Q Consensus       177 lv~e~~~~~~l--------------------------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~k  217 (256)
                      ++|||+++++|                          ++...+.++.+++             +||||+|||++.++.+|
T Consensus        84 lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~~i~H~dlkp~Nil~~~~~~~~  163 (291)
T cd05094          84 MVFEYMKHGDLNKFLRAHGPDAMILVDGQPRQAKGELGLSQMLHIASQIASGMVYLASQHFVHRDLATRNCLVGANLLVK  163 (291)
T ss_pred             EEEecCCCCcHHHHHHhcCcccccccccccccCcCCCCHHHHHHHHHHHHHHHHHHHhCCeeecccCcceEEEccCCcEE
Confidence            99999987654                          3344455555554             69999999999999999


Q ss_pred             EEecCCceecCCCCce-eeeeeeecccc----cccccCCCCCCC
Q 047066          218 VCDFGASKLVPIDETQ-LSTMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       218 i~DFGla~~~~~~~~~-~~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      |+|||++......... ......|++.|    .+.+..++.++|
T Consensus       164 l~dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~D  207 (291)
T cd05094         164 IGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESD  207 (291)
T ss_pred             ECCCCcccccCCCceeecCCCCCcceeecChHHhccCCCCchhh
Confidence            9999999866433221 11223356667    455667777776

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some n

>KOG0666 consensus Cyclin C-dependent kinase CDK8 [Transcription]

Probab=99.81  E-value=1.9e-20  Score=152.04  Aligned_cols=154  Identities=24%  Similarity=0.274  Sum_probs=117.2

Q ss_pred             cCCCcccceeeeeCceEEEEEEEC---C--CcEEEEEEecccCh--hHHHHHHHHHHHHHhCCCCcccceeeEEEE-CCE
Q 047066          103 TNNYAYDRMIGRGGYGTVFLGSLS---D--NKAIAIKKSRIVYQ--SQIEQCINKVVVLSQINHRNVVGLLGCCLE-TEV  174 (256)
Q Consensus       103 ~~~~~~~~~lg~G~~g~V~~~~~~---~--~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~h~niv~l~~~~~~-~~~  174 (256)
                      ...|+....||+|.||.||++..+   +  ...+|+|+++....  .......+|+.+++.++|||++.+..++.. +..
T Consensus        23 l~~ye~ig~Ig~GTYG~VykA~~~~~n~kr~k~yAiKkfk~~kd~tGiS~SAcREiaL~REl~h~nvi~Lv~Vfl~~d~~  102 (438)
T KOG0666|consen   23 LFEYEGIGKIGRGTYGKVYKAVRKNTNDKRTKEYAIKKFKGEKDGTGISMSACREIALLRELKHPNVISLVKVFLSHDKK  102 (438)
T ss_pred             HHHhhccceecccccceeeEeeeccCCcccchhhHHHHHhccCCCCCcCHHHHHHHHHHHHhcCCcchhHHHHHhccCce
Confidence            356888899999999999999632   2  33789998875432  223567899999999999999999999987 788


Q ss_pred             EEEEEecCCCCC--------------CCHHHHHHHHH-------------HHHhccCCCcEEEcCC----CcEEEEecCC
Q 047066          175 PLLVNEFVKLPT--------------ISWEVRIRIAA-------------ETAEDIKSINILLDDN----YTTKVCDFGA  223 (256)
Q Consensus       175 ~~lv~e~~~~~~--------------l~~~~~~~~~~-------------~i~rdlk~~NiLi~~~----~~~ki~DFGl  223 (256)
                      .++++||.++..              ++......+.-             -++|||||.|||+..+    |.|||+|||+
T Consensus       103 v~l~fdYAEhDL~~II~fHr~~~~~~lp~~mvKsilwQil~Gv~YLH~NWvlHRDLKPaNIlvmgdgperG~VKIaDlGl  182 (438)
T KOG0666|consen  103 VWLLFDYAEHDLWHIIKFHRASKAKQLPRSMVKSILWQILDGVHYLHSNWVLHRDLKPANILVMGDGPERGRVKIADLGL  182 (438)
T ss_pred             EEEEehhhhhhHHHHHHHhccchhccCCHHHHHHHHHHHHhhhHHHhhhheeeccCCcceEEEeccCCccCeeEeecccH
Confidence            999999997732              22222222222             2448999999999766    8999999999


Q ss_pred             ceecCCCCcee--eeeeeecccc-----cccccCCCCCCC
Q 047066          224 SKLVPIDETQL--STMVQGTLGY-----YLHTSQGTLNKE  256 (256)
Q Consensus       224 a~~~~~~~~~~--~~~~~Gt~~y-----~~~~~~~t~ksD  256 (256)
                      ||.+.++-...  ...++-|.+|     .+...+||++.|
T Consensus       183 aR~~~~plkpl~s~d~VVVTiWYRAPELLLGa~hYT~AiD  222 (438)
T KOG0666|consen  183 ARLFNNPLKPLASLDPVVVTIWYRAPELLLGARHYTKAID  222 (438)
T ss_pred             HHHhhccccccccCCceEEEEEecChHHhcccccccchhh
Confidence            99987664443  2456789999     566778888766

>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.81  E-value=2.5e-21  Score=169.88  Aligned_cols=137  Identities=20%  Similarity=0.232  Sum_probs=108.9

Q ss_pred             cccceeeeeCceEEEEEEECCC-cEEEEEEecccChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEecCCCC
Q 047066          107 AYDRMIGRGGYGTVFLGSLSDN-KAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEFVKLP  185 (256)
Q Consensus       107 ~~~~~lg~G~~g~V~~~~~~~~-~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~~~  185 (256)
                      .+...||.|+||+||++..+.. -..|-|.+........++++-|++||..++||+|++|++.|...+.+||+.|||.||
T Consensus        35 eIiGELGDGAFGKVyKA~nket~~lAAaKvIetkseEELEDylVEIeILa~CdHP~ivkLl~ayy~enkLwiliEFC~GG  114 (1187)
T KOG0579|consen   35 EIIGELGDGAFGKVYKAVNKETKLLAAAKVIETKSEEELEDYLVEIEILAECDHPVIVKLLSAYYFENKLWILIEFCGGG  114 (1187)
T ss_pred             HHHhhhcCccchhhhhhhcccchhhhhhhhhcccchhHHhhhhhhhhhhhcCCChHHHHHHHHHhccCceEEEEeecCCc
Confidence            3345799999999999997753 345667777777788899999999999999999999999999999999999999997


Q ss_pred             CCC-----------HHHH-------------HHHHHHHHhccCCCcEEEcCCCcEEEEecCCceecCCCCceeeeeeeec
Q 047066          186 TIS-----------WEVR-------------IRIAAETAEDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGT  241 (256)
Q Consensus       186 ~l~-----------~~~~-------------~~~~~~i~rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~~~~Gt  241 (256)
                      .++           ..+.             ++-...||||||+.|||+..+|.++|+|||.+....... .......||
T Consensus       115 AVDaimlEL~r~LtE~QIqvvc~q~ldALn~LHs~~iIHRDLKAGNiL~TldGdirLADFGVSAKn~~t~-qkRDsFIGT  193 (1187)
T KOG0579|consen  115 AVDAIMLELGRVLTEDQIQVVCYQVLDALNWLHSQNIIHRDLKAGNILLTLDGDIRLADFGVSAKNKSTR-QKRDSFIGT  193 (1187)
T ss_pred             hHhHHHHHhccccchHHHHHHHHHHHHHHHHHhhcchhhhhccccceEEEecCcEeeecccccccchhHH-hhhccccCC
Confidence            742           2222             233345779999999999999999999999987543221 122345699


Q ss_pred             ccc
Q 047066          242 LGY  244 (256)
Q Consensus       242 ~~y  244 (256)
                      |.|
T Consensus       194 PYW  196 (1187)
T KOG0579|consen  194 PYW  196 (1187)
T ss_pred             ccc
Confidence            988

>cd05092 PTKc_TrkA Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A

Probab=99.81  E-value=3.7e-19  Score=148.66  Aligned_cols=154  Identities=20%  Similarity=0.333  Sum_probs=118.9

Q ss_pred             cCCCcccceeeeeCceEEEEEEEC------CCcEEEEEEecccChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEE
Q 047066          103 TNNYAYDRMIGRGGYGTVFLGSLS------DNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPL  176 (256)
Q Consensus       103 ~~~~~~~~~lg~G~~g~V~~~~~~------~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~  176 (256)
                      .++|...+.||+|+||.||++...      ++..+++|.+..........+.+|+++++.++|+||+++++++...+..+
T Consensus         4 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~   83 (280)
T cd05092           4 RRDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTVLQHQHIVRFYGVCTEGRPLL   83 (280)
T ss_pred             hHhceeccccCCccCCeEEEeEEecCCCCCCceEEEEEecCcCCHHHHHHHHHHHHHHhcCCCCCCceEEEEEecCCceE
Confidence            457888899999999999999632      35678999887666666678999999999999999999999999999999


Q ss_pred             EEEecCCCCCC-------------------------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEE
Q 047066          177 LVNEFVKLPTI-------------------------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKV  218 (256)
Q Consensus       177 lv~e~~~~~~l-------------------------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki  218 (256)
                      +++||+.+++|                         ++.....++.|++             +||||+|||+++++.+||
T Consensus        84 lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH~~~i~H~dlkp~nil~~~~~~~kL  163 (280)
T cd05092          84 MVFEYMRHGDLNRFLRSHGPDAKILAGGEDVAPGQLTLGQMLAIASQIASGMVYLASLHFVHRDLATRNCLVGQGLVVKI  163 (280)
T ss_pred             EEEecCCCCCHHHHHHhcCcchhhhcccccCCccccCHHHHHHHHHHHHHHHHHHHHCCeecccccHhhEEEcCCCCEEE
Confidence            99999987654                         3444455555543             699999999999999999


Q ss_pred             EecCCceecCCCCcee-eeeeeecccc----cccccCCCCCCC
Q 047066          219 CDFGASKLVPIDETQL-STMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       219 ~DFGla~~~~~~~~~~-~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      +|||+++......... .....+++.|    ...+..++.++|
T Consensus       164 ~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~D  206 (280)
T cd05092         164 GDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESD  206 (280)
T ss_pred             CCCCceeEcCCCceeecCCCccccccccCHHHhccCCcCchhh
Confidence            9999998664332211 1122345667    455667777776

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory

>cd05053 PTKc_FGFR Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors

Probab=99.81  E-value=2.9e-19  Score=150.08  Aligned_cols=159  Identities=18%  Similarity=0.318  Sum_probs=120.4

Q ss_pred             HHHhhcCCCcccceeeeeCceEEEEEEEC------CCcEEEEEEecccC-hhHHHHHHHHHHHHHhC-CCCcccceeeEE
Q 047066           98 ELKIATNNYAYDRMIGRGGYGTVFLGSLS------DNKAIAIKKSRIVY-QSQIEQCINKVVVLSQI-NHRNVVGLLGCC  169 (256)
Q Consensus        98 ~~~~~~~~~~~~~~lg~G~~g~V~~~~~~------~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l-~h~niv~l~~~~  169 (256)
                      ++.+..++|++.+.||+|+||.||++...      ....+++|...... ......+.+|+.++..+ +|+||+++++++
T Consensus         6 ~~~~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~   85 (293)
T cd05053           6 EWELPRDRLTLGKPLGEGAFGQVVKAEAVGLDNPNETSTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGVC   85 (293)
T ss_pred             ccccCHhHeEEeeEecccccccEEEEEEecCCCCCCceeEEEEEccCCCCHHHHHHHHHHHHHHHhhcCCCCeeeEEEEE
Confidence            56667788999999999999999999853      23678999876533 34456789999999999 899999999999


Q ss_pred             EECCEEEEEEecCCCCCCCH--------------------------HHHHHHHHHHH-------------hccCCCcEEE
Q 047066          170 LETEVPLLVNEFVKLPTISW--------------------------EVRIRIAAETA-------------EDIKSINILL  210 (256)
Q Consensus       170 ~~~~~~~lv~e~~~~~~l~~--------------------------~~~~~~~~~i~-------------rdlk~~NiLi  210 (256)
                      ...+..+++|||+++++|..                          ...+.++.|++             +||||+||++
T Consensus        86 ~~~~~~~li~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~~~ivH~dlkp~Nil~  165 (293)
T cd05053          86 TQEGPLYVVVEYAAHGNLRDFLRARRPPGEYASPDDPRPPEETLTQKDLVSFAYQVARGMEFLASKKCIHRDLAARNVLV  165 (293)
T ss_pred             cCCCCeEEEEEeCCCCcHHHHHHhcCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHHHCCccccccceeeEEE
Confidence            99999999999998866533                          23344555544             6999999999


Q ss_pred             cCCCcEEEEecCCceecCCCCceee-eeeeecccc----cccccCCCCCCC
Q 047066          211 DDNYTTKVCDFGASKLVPIDETQLS-TMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       211 ~~~~~~ki~DFGla~~~~~~~~~~~-~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      ++++.+||+|||+++.+........ ....+++.|    +..+..++.++|
T Consensus       166 ~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~D  216 (293)
T cd05053         166 TEDHVMKIADFGLARDIHHIDYYRKTTNGRLPVKWMAPEALFDRVYTHQSD  216 (293)
T ss_pred             cCCCeEEeCccccccccccccceeccCCCCCCccccCHHHhccCCcCcccc
Confidence            9999999999999987654332211 112244556    445566777776

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation,

>cd05081 PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=99.81  E-value=4.2e-19  Score=148.47  Aligned_cols=127  Identities=23%  Similarity=0.447  Sum_probs=104.3

Q ss_pred             CCCcccceeeeeCceEEEEEEEC-----CCcEEEEEEecccChhHHHHHHHHHHHHHhCCCCcccceeeEEEE--CCEEE
Q 047066          104 NNYAYDRMIGRGGYGTVFLGSLS-----DNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLE--TEVPL  176 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~V~~~~~~-----~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~--~~~~~  176 (256)
                      .+|++.+.||+|+||.||++..+     ++..+++|.+........+.+.+|+.+++.++||||+++.+++..  ....+
T Consensus         4 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~   83 (284)
T cd05081           4 RHLKFIQQLGKGNFGSVELCRYDPLQDNTGEVVAVKKLQHSTAEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLR   83 (284)
T ss_pred             ccceeeeeccCCCCceEEEEEecCCcCCCCcEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCeeEEEEEEccCCCCceE
Confidence            57888899999999999999742     577899999876666666789999999999999999999998764  34689


Q ss_pred             EEEecCCCCCC-----------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCC
Q 047066          177 LVNEFVKLPTI-----------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPID  230 (256)
Q Consensus       177 lv~e~~~~~~l-----------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~  230 (256)
                      +++||+++++|           ++.....++.+++             +||||+||++++++.+||+|||+++.+...
T Consensus        84 lv~e~~~~~~L~~~l~~~~~~l~~~~~~~~~~~l~~aL~~LH~~~i~H~dlkp~nili~~~~~~~l~dfg~~~~~~~~  161 (284)
T cd05081          84 LVMEYLPYGSLRDYLQKHRERLDHRKLLLYASQICKGMEYLGSKRYVHRDLATRNILVESENRVKIGDFGLTKVLPQD  161 (284)
T ss_pred             EEEEecCCCCHHHHHHhcCcCCCHHHHHHHHHHHHHHHHHHHHCCceeccCCHhhEEECCCCeEEECCCcccccccCC
Confidence            99999988665           3344444555544             599999999999999999999999976543

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as th

>cd05586 STKc_Sck1_like Catalytic domain of Suppressor of loss of cAMP-dependent protein kinase-like Protein Serine/Threonine Kinases

Probab=99.81  E-value=4.5e-19  Score=151.68  Aligned_cols=144  Identities=25%  Similarity=0.294  Sum_probs=107.6

Q ss_pred             eeeeCceEEEEEEEC-CCcEEEEEEecccC---hhHHHHHHHHHHHHHhC---CCCcccceeeEEEECCEEEEEEecCCC
Q 047066          112 IGRGGYGTVFLGSLS-DNKAIAIKKSRIVY---QSQIEQCINKVVVLSQI---NHRNVVGLLGCCLETEVPLLVNEFVKL  184 (256)
Q Consensus       112 lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l---~h~niv~l~~~~~~~~~~~lv~e~~~~  184 (256)
                      ||+|+||.||+|..+ ++..+|+|.+....   .........|..++...   +||||+++++.+...+..+++|||+++
T Consensus         1 lG~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~p~i~~~~~~~~~~~~~~lv~e~~~~   80 (330)
T cd05586           1 IGKGTFGQVYQVRKKDTRRIYAMKVLSKKEIVAKKEVAHTIGERNILVRTLLDESPFIVGLKFSFQTDSDLYLVTDYMSG   80 (330)
T ss_pred             CCCCCceEEEEEEECCCCCEEEEEEEeHHHHhhhhHHHHHHHHHHHHHHhccCCCCcCcceEEEEecCCeEEEEEcCCCC
Confidence            689999999999975 68899999875422   22334556677777655   699999999999999999999999988


Q ss_pred             CCC----------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceeeeeeeec
Q 047066          185 PTI----------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGT  241 (256)
Q Consensus       185 ~~l----------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~~~~Gt  241 (256)
                      ++|          +......++.|++             |||||+|||++.++.+||+|||+++....... .....+||
T Consensus        81 g~L~~~l~~~~~~~~~~~~~~~~qil~al~~LH~~~ivHrDlkp~Nili~~~~~~kl~Dfg~a~~~~~~~~-~~~~~~gt  159 (330)
T cd05586          81 GELFWHLQKEGRFSEDRAKFYIAELVLALEHLHKYDIVYRDLKPENILLDATGHIALCDFGLSKANLTDNK-TTNTFCGT  159 (330)
T ss_pred             ChHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeEeccCCHHHeEECCCCCEEEecCCcCcCCCCCCC-CccCccCC
Confidence            765          3444445555544             79999999999999999999999976432222 12345699


Q ss_pred             ccc----cccc-cCCCCCCC
Q 047066          242 LGY----YLHT-SQGTLNKE  256 (256)
Q Consensus       242 ~~y----~~~~-~~~t~ksD  256 (256)
                      +.|    .+.+ ..++.++|
T Consensus       160 ~~y~aPE~~~~~~~~~~~~D  179 (330)
T cd05586         160 TEYLAPEVLLDEKGYTKHVD  179 (330)
T ss_pred             ccccCHHHHcCCCCCCCccc
Confidence            999    3333 34677777

Serine/Threonine Kinases (STKs), Fission yeast Suppressor of loss of cAMP-dependent protein kinase (Sck1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sck1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the Schizosaccharomyces pombe STK Sck1. Sck1 plays a role in trehalase activation triggered by glucose and a nitrogen source. Trehalase catalyzes the cleavage of the disaccharide trehalose to glucose. Trehalose, as a carbohydrate reserve and stress metabolite, plays an important role in the response of

>cd05111 PTK_HER3 Pseudokinase domain of the Protein Tyrosine Kinase, HER3

Probab=99.81  E-value=4e-19  Score=148.43  Aligned_cols=152  Identities=19%  Similarity=0.341  Sum_probs=113.4

Q ss_pred             CCCcccceeeeeCceEEEEEEEC-CCc----EEEEEEecccC-hhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEE
Q 047066          104 NNYAYDRMIGRGGYGTVFLGSLS-DNK----AIAIKKSRIVY-QSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLL  177 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~V~~~~~~-~~~----~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~l  177 (256)
                      ++|++.+.||+|+||.||+|.+. ++.    .+++|...... ......+..|+..+++++||||+++++++.. ...++
T Consensus         7 ~~~~~~~~lg~G~~~~vy~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~l~~l~h~~iv~~~~~~~~-~~~~~   85 (279)
T cd05111           7 TELRKLKLLGSGVFGTVHKGIWIPEGDSIKIPVAIKTIQDRSGRQTFQEITDHMLAMGSLDHAYIVRLLGICPG-ASLQL   85 (279)
T ss_pred             hhceeccccCccCCcceEEEEEcCCCCceeeEEEEeecccccchHHHHHHHHHHHHHhcCCCCCcceEEEEECC-CccEE
Confidence            46778899999999999999864 343    47777765432 2334667888889999999999999998864 45778


Q ss_pred             EEecCCCCCC-----------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCce
Q 047066          178 VNEFVKLPTI-----------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQ  233 (256)
Q Consensus       178 v~e~~~~~~l-----------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~  233 (256)
                      ++||+.+++|           ++.....++.|++             +||||+|||+++++.+||+|||+++........
T Consensus        86 i~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~iiH~dlkp~nili~~~~~~kl~Dfg~~~~~~~~~~~  165 (279)
T cd05111          86 VTQLSPLGSLLDHVRQHRDSLDPQRLLNWCVQIAKGMYYLEEHRMVHRNLAARNILLKSDSIVQIADFGVADLLYPDDKK  165 (279)
T ss_pred             EEEeCCCCcHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHCCEeccccCcceEEEcCCCcEEEcCCccceeccCCCcc
Confidence            9999987665           4445556666655             599999999999999999999999876433222


Q ss_pred             e-eeeeeecccc----cccccCCCCCCC
Q 047066          234 L-STMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       234 ~-~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      . .+...|+..|    ...++.++.++|
T Consensus       166 ~~~~~~~~~~~y~~pE~~~~~~~~~~~D  193 (279)
T cd05111         166 YFYSEHKTPIKWMALESILFGRYTHQSD  193 (279)
T ss_pred             cccCCCCCcccccCHHHhccCCcCchhh
Confidence            1 2233466667    555677888877

Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr r

>cd05035 PTKc_Axl_like Catalytic Domain of Axl-like Protein Tyrosine Kinases

Probab=99.81  E-value=7e-19  Score=145.96  Aligned_cols=151  Identities=24%  Similarity=0.456  Sum_probs=111.1

Q ss_pred             CcccceeeeeCceEEEEEEEC-C---CcEEEEEEecccC--hhHHHHHHHHHHHHHhCCCCcccceeeEEEECCE-----
Q 047066          106 YAYDRMIGRGGYGTVFLGSLS-D---NKAIAIKKSRIVY--QSQIEQCINKVVVLSQINHRNVVGLLGCCLETEV-----  174 (256)
Q Consensus       106 ~~~~~~lg~G~~g~V~~~~~~-~---~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~-----  174 (256)
                      |++.+.||+|+||.||+|... +   +..+|+|.++...  ....+.+.+|+..++.++||||+++++++...+.     
T Consensus         1 ~~~~~~lg~G~~g~v~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~   80 (273)
T cd05035           1 LKLGKILGEGEFGSVMEGQLSQDDGSQLKVAVKTMKLDIHTYSEIEEFLSEAACMKDFDHPNVMKLIGVCFEASSLQKIP   80 (273)
T ss_pred             CccccccCcCCCceEEEEEEecCCCCcceEEEEEeccCcCCHHHHHHHHHHHHHHHhCCCCCeeeEEeeeccCCccccCc
Confidence            567789999999999999864 2   3679999886432  3445688999999999999999999998876544     


Q ss_pred             -EEEEEecCCCCCC----------------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCc
Q 047066          175 -PLLVNEFVKLPTI----------------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGAS  224 (256)
Q Consensus       175 -~~lv~e~~~~~~l----------------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla  224 (256)
                       .++++||+++++|                ++.....++.|++             +||||+||++++++.+||+|||++
T Consensus        81 ~~~~v~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~aL~~lH~~~i~H~dlkp~Nil~~~~~~~kl~dfg~~  160 (273)
T cd05035          81 KPMVILPFMKHGDLHSFLLYSRLGGLPEKLPLQTLLKFMVDIALGMEYLSNRNFIHRDLAARNCMLREDMTVCVADFGLS  160 (273)
T ss_pred             ccEEEEeccCCCCHHHHHHHhhccCCcccCCHHHHHHHHHHHHHHHHHHHhCCeeccccchheEEECCCCeEEECCccce
Confidence             7999999988765                3333344444433             699999999999999999999999


Q ss_pred             eecCCCCceeee-eeeecccc----cccccCCCCCCC
Q 047066          225 KLVPIDETQLST-MVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       225 ~~~~~~~~~~~~-~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      +.+......... ...++..|    ++....++.++|
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~D  197 (273)
T cd05035         161 KKIYSGDYYRQGRIAKMPVKWIAIESLADRVYTSKSD  197 (273)
T ss_pred             eeccccccccccccccCCccccCHhhcccCCCCcccc
Confidence            876543322111 12234455    444566777776

Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellu

>cd06647 STKc_PAK_I Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase

Probab=99.80  E-value=5.5e-19  Score=148.73  Aligned_cols=152  Identities=24%  Similarity=0.318  Sum_probs=120.4

Q ss_pred             CCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEecC
Q 047066          104 NNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEFV  182 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~  182 (256)
                      ++|.+.+.||+|+||.||++... ++..+++|.+........+.+.+|+.+++.++|||++++++.+...+..++++||+
T Consensus        19 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~~~~~lv~e~~   98 (293)
T cd06647          19 KKYTRFEKIGQGASGTVYTAIDVATGQEVAIKQMNLQQQPKKELIINEILVMRENKHPNIVNYLDSYLVGDELWVVMEYL   98 (293)
T ss_pred             hhceeeeEecCCCCeEEEEEEEcCCCCEEEEEEeccccchHHHHHHHHHHHHhhcCCCCeeehhheeeeCCcEEEEEecC
Confidence            67888899999999999999864 67899999886544445577899999999999999999999999999999999999


Q ss_pred             CCCCC---------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceeeeeeee
Q 047066          183 KLPTI---------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQG  240 (256)
Q Consensus       183 ~~~~l---------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~~~~G  240 (256)
                      ++++|         ++.....++.+++             +||+|+||+++.++.+||+|||++......... .....|
T Consensus        99 ~~~~L~~~~~~~~l~~~~~~~i~~~l~~al~~LH~~gi~H~dL~p~Nili~~~~~~kL~dfg~~~~~~~~~~~-~~~~~~  177 (293)
T cd06647          99 AGGSLTDVVTETCMDEGQIAAVCRECLQALEFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSK-RSTMVG  177 (293)
T ss_pred             CCCcHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHhCCEeeccCCHHHEEEcCCCCEEEccCcceecccccccc-cccccC
Confidence            98765         3344455555554             699999999999999999999998866543322 222357


Q ss_pred             cccc----cccccCCCCCCC
Q 047066          241 TLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       241 t~~y----~~~~~~~t~ksD  256 (256)
                      ++.|    ....+.++.++|
T Consensus       178 ~~~y~~PE~~~~~~~~~~~D  197 (293)
T cd06647         178 TPYWMAPEVVTRKAYGPKVD  197 (293)
T ss_pred             ChhhcCchhhccCCCCchhh
Confidence            7777    444566777776

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their bi

>cd07861 STKc_CDK1_euk Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like

Probab=99.80  E-value=5.2e-19  Score=147.82  Aligned_cols=151  Identities=25%  Similarity=0.352  Sum_probs=114.4

Q ss_pred             CCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC--hhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEec
Q 047066          105 NYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY--QSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEF  181 (256)
Q Consensus       105 ~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~  181 (256)
                      +|++.+.||+|++|.||+|..+ ++..+++|.+....  ......+.+|+.+++.++|||++++++++..++..+++|||
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~   80 (285)
T cd07861           1 DYTKIEKIGEGTYGVVYKGRNKKTGQIVAMKKIRLESEEEGVPSTAIREISLLKELQHPNIVCLQDVLMQESRLYLIFEF   80 (285)
T ss_pred             CceEeeEecccCceEEEEEEECCCCcEEEEEEeccccccCCchHHHHHHHHHHHhcCCCCEeeeEEEEeeCCeEEEEEec
Confidence            4778889999999999999975 68899999876432  22346678899999999999999999999999999999999


Q ss_pred             CCC------------CCCCHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceeee
Q 047066          182 VKL------------PTISWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLST  236 (256)
Q Consensus       182 ~~~------------~~l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~  236 (256)
                      +++            +.+++.....++.|++             +||+|+||++++++.+||+|||++.....+... ..
T Consensus        81 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~qi~~~L~~lH~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~-~~  159 (285)
T cd07861          81 LSMDLKKYLDSLPKGQYMDAELVKSYLYQILQGILFCHSRRVLHRDLKPQNLLIDNKGVIKLADFGLARAFGIPVRV-YT  159 (285)
T ss_pred             CCCCHHHHHhcCCCCCcCCHHHHHHHHHHHHHHHHHHHhCCeeecCCCHHHEEEcCCCcEEECcccceeecCCCccc-cc
Confidence            974            2355555555666555             599999999999999999999999866433221 12


Q ss_pred             eeeecccc---c-cc-ccCCCCCCC
Q 047066          237 MVQGTLGY---Y-LH-TSQGTLNKE  256 (256)
Q Consensus       237 ~~~Gt~~y---~-~~-~~~~t~ksD  256 (256)
                      ...|++.|   + +. ...++.++|
T Consensus       160 ~~~~~~~y~aPE~~~~~~~~~~~~D  184 (285)
T cd07861         160 HEVVTLWYRAPEVLLGSPRYSTPVD  184 (285)
T ss_pred             CCcccccccChHHhcCCCCcCcHHH
Confidence            22466767   2 22 233566655

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2

>cd06631 STKc_YSK4 Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4

Probab=99.80  E-value=8e-19  Score=145.25  Aligned_cols=152  Identities=26%  Similarity=0.404  Sum_probs=115.3

Q ss_pred             CCcccceeeeeCceEEEEEEECCCcEEEEEEecccC------hhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEE
Q 047066          105 NYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVY------QSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLV  178 (256)
Q Consensus       105 ~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~------~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv  178 (256)
                      +|+..+.||+|+||.||+|...++..+|+|.+....      ......+.+|+++++.++|+||+++.+++...+..+++
T Consensus         1 ~~~~~~~ig~g~~~~v~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv   80 (265)
T cd06631           1 EWTKGEVLGKGAYGTVYCGLTNQGQLIAVKQVELDTSNVLAAEKEYEKLQEEVDLLKSLKHVNIVQYLGTCLDDNTISIF   80 (265)
T ss_pred             CccccceEeccCCeEEEEEEEcCCCeEEEEEeecCccchhhHHHHHHHHHHHHHHHHhcCCCCEeeEeeEeecCCeEEEE
Confidence            367788999999999999988788999999875322      22335688999999999999999999999999999999


Q ss_pred             EecCCCCCCC----------HHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCC----
Q 047066          179 NEFVKLPTIS----------WEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDE----  231 (256)
Q Consensus       179 ~e~~~~~~l~----------~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~----  231 (256)
                      +||+++++|.          +.....++.+++             +||+|+||++++++.+||+|||++.......    
T Consensus        81 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~  160 (265)
T cd06631          81 MEFVPGGSISSILNRFGPLPEPVFCKYTKQILDGVAYLHNNCVVHRDIKGNNVMLMPNGIIKLIDFGCARRLAWVGLHGT  160 (265)
T ss_pred             EecCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCcCHHhEEECCCCeEEeccchhhHhhhhcccccc
Confidence            9999887653          333333444433             6999999999999999999999998653211    


Q ss_pred             -ceeeeeeeecccc----cccccCCCCCCC
Q 047066          232 -TQLSTMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       232 -~~~~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                       ........|++.|    +..+..++.++|
T Consensus       161 ~~~~~~~~~~~~~~~~pe~~~~~~~~~~~D  190 (265)
T cd06631         161 HSNMLKSMHGTPYWMAPEVINESGYGRKSD  190 (265)
T ss_pred             ccccccccCCCccccChhhhcCCCCcchhh
Confidence             1111223477777    555566677766

Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals.

>cd05101 PTKc_FGFR2 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2

Probab=99.80  E-value=4.6e-19  Score=149.81  Aligned_cols=158  Identities=17%  Similarity=0.303  Sum_probs=118.5

Q ss_pred             HHhhcCCCcccceeeeeCceEEEEEEEC--------CCcEEEEEEecccC-hhHHHHHHHHHHHHHhC-CCCcccceeeE
Q 047066           99 LKIATNNYAYDRMIGRGGYGTVFLGSLS--------DNKAIAIKKSRIVY-QSQIEQCINKVVVLSQI-NHRNVVGLLGC  168 (256)
Q Consensus        99 ~~~~~~~~~~~~~lg~G~~g~V~~~~~~--------~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l-~h~niv~l~~~  168 (256)
                      +.+...+|.+.+.||+|+||.||++...        ++..+++|...... ....+.+.+|+.+++.+ +||||+++++.
T Consensus        10 ~~~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~   89 (304)
T cd05101          10 WEFSRDKLTLGKPLGEGCFGQVVMAEALGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGA   89 (304)
T ss_pred             ccccHHHeeecceeeccCCceEEEEEEeccCCCCCCcceeEEeeecccccchHHHHHHHHHHHHHHhhccCCCchheeEE
Confidence            3455678889999999999999999631        24578999876432 34457789999999999 89999999999


Q ss_pred             EEECCEEEEEEecCCCCCCCHH--------------------------HHHHHHHHHH-------------hccCCCcEE
Q 047066          169 CLETEVPLLVNEFVKLPTISWE--------------------------VRIRIAAETA-------------EDIKSINIL  209 (256)
Q Consensus       169 ~~~~~~~~lv~e~~~~~~l~~~--------------------------~~~~~~~~i~-------------rdlk~~NiL  209 (256)
                      +...+..+++|||+++++|...                          ..+.++.|++             +||||+||+
T Consensus        90 ~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~~givH~dlkp~Nil  169 (304)
T cd05101          90 CTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDIARVPDEQMTFKDLVSCTYQVARGMEYLASQKCIHRDLAARNVL  169 (304)
T ss_pred             EecCCceEEEEecCCCCcHHHHHHhcCCcccccccccccCCcccccHHHHHHHHHHHHHHHHHHHHCCeeecccccceEE
Confidence            9999999999999998765432                          2333444444             699999999


Q ss_pred             EcCCCcEEEEecCCceecCCCCcee-eeeeeecccc----cccccCCCCCCC
Q 047066          210 LDDNYTTKVCDFGASKLVPIDETQL-STMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       210 i~~~~~~ki~DFGla~~~~~~~~~~-~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      +++++.+||+|||+++......... .....+++.|    .+.+..++.++|
T Consensus       170 i~~~~~~kl~D~g~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~D  221 (304)
T cd05101         170 VTENNVMKIADFGLARDVNNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSD  221 (304)
T ss_pred             EcCCCcEEECCCccceecccccccccccCCCCCceeeCchhhccCCCCchhh
Confidence            9999999999999998775432221 1122355667    445566777776

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd06659 STKc_PAK6 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6

Probab=99.80  E-value=3e-19  Score=150.69  Aligned_cols=150  Identities=23%  Similarity=0.280  Sum_probs=117.8

Q ss_pred             CcccceeeeeCceEEEEEEEC-CCcEEEEEEecccChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEecCCC
Q 047066          106 YAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEFVKL  184 (256)
Q Consensus       106 ~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~~  184 (256)
                      |.....||+|+||.||++... +++.+++|.+........+.+.+|+.++..++|||++++++.+...+..++++||+++
T Consensus        23 ~~~~~~ig~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~~~~~iv~e~~~~  102 (297)
T cd06659          23 LENYIKIGEGSTGIVCIAREKHSGRQVAVKMMDLRKQQRRELLFNEVVIMRDYQHQNVVEMYKSYLVGEELWVLMEFLQG  102 (297)
T ss_pred             HHhhhhcCCCCceeEEEEEEcCCCCEEEEEEEEecccchHHHHHHHHHHHHhCCCCchhhhhhheeeCCeEEEEEecCCC
Confidence            344457999999999999865 6889999988654444456788999999999999999999999999999999999988


Q ss_pred             CCC---------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceeeeeeeecc
Q 047066          185 PTI---------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTL  242 (256)
Q Consensus       185 ~~l---------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~~~~Gt~  242 (256)
                      ++|         ++.....++.|++             +||+|+||+++.++.+||+|||++..+..+... .....|++
T Consensus       103 ~~L~~~~~~~~~~~~~~~~~~~qi~~~L~~LH~~~ivH~dl~p~Nill~~~~~~kL~dfg~~~~~~~~~~~-~~~~~~~~  181 (297)
T cd06659         103 GALTDIVSQTRLNEEQIATVCESVLQALCYLHSQGVIHRDIKSDSILLTLDGRVKLSDFGFCAQISKDVPK-RKSLVGTP  181 (297)
T ss_pred             CCHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHeEEccCCcEEEeechhHhhccccccc-ccceecCc
Confidence            665         3444445555544             699999999999999999999999765433221 23356888


Q ss_pred             cc----cccccCCCCCCC
Q 047066          243 GY----YLHTSQGTLNKE  256 (256)
Q Consensus       243 ~y----~~~~~~~t~ksD  256 (256)
                      .|    ++.+..++.++|
T Consensus       182 ~y~aPE~~~~~~~~~~~D  199 (297)
T cd06659         182 YWMAPEVISRTPYGTEVD  199 (297)
T ss_pred             cccCHHHHccCCCCchhh
Confidence            88    555667788877

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role i

>cd05079 PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=99.80  E-value=6.2e-19  Score=147.57  Aligned_cols=153  Identities=20%  Similarity=0.335  Sum_probs=116.0

Q ss_pred             CCCcccceeeeeCceEEEEEEE-----CCCcEEEEEEecccC-hhHHHHHHHHHHHHHhCCCCcccceeeEEEEC--CEE
Q 047066          104 NNYAYDRMIGRGGYGTVFLGSL-----SDNKAIAIKKSRIVY-QSQIEQCINKVVVLSQINHRNVVGLLGCCLET--EVP  175 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~V~~~~~-----~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~--~~~  175 (256)
                      ..|++.+.||+|+||.||.+..     .++..+++|.++... ......+.+|+.+++.++|||++++.+++...  ...
T Consensus         4 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~   83 (284)
T cd05079           4 RFLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKYKGICTEDGGNGI   83 (284)
T ss_pred             hhhhhceecCCCCceeEEEEEEccCCCCccceEEEEEcCccccHHHHHHHHHHHHHHHhCCCCCeeeeeeEEecCCCCce
Confidence            3578889999999999999974     247789999886543 34456789999999999999999999998874  568


Q ss_pred             EEEEecCCCCCC-----------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCC
Q 047066          176 LLVNEFVKLPTI-----------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDE  231 (256)
Q Consensus       176 ~lv~e~~~~~~l-----------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~  231 (256)
                      +++|||+++++|           ++.....++.+++             +||||+||+++.++.+||+|||+++.+....
T Consensus        84 ~lv~e~~~g~~L~~~l~~~~~~~~~~~~~~i~~~i~~aL~~lH~~gi~H~dlkp~Nil~~~~~~~~l~dfg~~~~~~~~~  163 (284)
T cd05079          84 KLIMEFLPSGSLKEYLPRNKNKINLKQQLKYAVQICKGMDYLGSRQYVHRDLAARNVLVESEHQVKIGDFGLTKAIETDK  163 (284)
T ss_pred             EEEEEccCCCCHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCeeecccchheEEEcCCCCEEECCCccccccccCc
Confidence            999999988765           3344445555544             6999999999999999999999998765433


Q ss_pred             cee--eeeeeecccc----cccccCCCCCCC
Q 047066          232 TQL--STMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       232 ~~~--~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      ...  .....|+..|    ...++.+++++|
T Consensus       164 ~~~~~~~~~~~~~~y~apE~~~~~~~~~~~D  194 (284)
T cd05079         164 EYYTVKDDLDSPVFWYAPECLIQSKFYIASD  194 (284)
T ss_pred             cceeecCCCCCCccccCHHHhccCCCCcccc
Confidence            211  1123355556    445566777777

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers a

>cd06641 STKc_MST3 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3

Probab=99.80  E-value=1.2e-18  Score=145.30  Aligned_cols=151  Identities=24%  Similarity=0.314  Sum_probs=117.3

Q ss_pred             CCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC-hhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEecC
Q 047066          105 NYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY-QSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEFV  182 (256)
Q Consensus       105 ~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~  182 (256)
                      -|+..+.||+|+||.||+|... ++..+|+|...... ......+.+|+..+..++||||+++++.+...+..++++||+
T Consensus         5 ~~~~~~~ig~G~~~~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~   84 (277)
T cd06641           5 LFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLKDTKLWIIMEYL   84 (277)
T ss_pred             hhhhheeEeecCCeEEEEEEECCCCcEEEEEEeccccchHHHHHHHHHHHHHHhcCCCCEeEEEEEEEeCCeEEEEEEeC
Confidence            4677789999999999999864 68899999875433 344567889999999999999999999999999999999999


Q ss_pred             CCCCC---------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceeeeeeee
Q 047066          183 KLPTI---------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQG  240 (256)
Q Consensus       183 ~~~~l---------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~~~~G  240 (256)
                      +++++         ++.....++.+++             +||+|+||+++.++.++|+|||++..+...... .....|
T Consensus        85 ~~~~l~~~i~~~~~~~~~~~~~~~~l~~~l~~lh~~~i~h~dl~p~Ni~i~~~~~~~l~dfg~~~~~~~~~~~-~~~~~~  163 (277)
T cd06641          85 GGGSALDLLEPGPLDETQIATILREILKGLDYLHSEKKIHRDIKAANVLLSEHGEVKLADFGVAGQLTDTQIK-RNTFVG  163 (277)
T ss_pred             CCCcHHHHHhcCCCCHHHHHHHHHHHHHHHHHHccCCeecCCCCHHhEEECCCCCEEEeecccceecccchhh-hccccC
Confidence            88664         4444555555554             599999999999999999999999876432211 122346


Q ss_pred             cccc----cccccCCCCCCC
Q 047066          241 TLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       241 t~~y----~~~~~~~t~ksD  256 (256)
                      +..|    ...+..++.++|
T Consensus       164 ~~~y~~PE~~~~~~~~~~~D  183 (277)
T cd06641         164 TPFWMAPEVIKQSAYDSKAD  183 (277)
T ss_pred             CccccChhhhccCCCCchhh
Confidence            7777    444556666665

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and int

>cd05056 PTKc_FAK Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase

Probab=99.80  E-value=4.5e-19  Score=147.20  Aligned_cols=154  Identities=21%  Similarity=0.319  Sum_probs=115.0

Q ss_pred             hcCCCcccceeeeeCceEEEEEEECC----CcEEEEEEecccC-hhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEE
Q 047066          102 ATNNYAYDRMIGRGGYGTVFLGSLSD----NKAIAIKKSRIVY-QSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPL  176 (256)
Q Consensus       102 ~~~~~~~~~~lg~G~~g~V~~~~~~~----~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~  176 (256)
                      ...+|.+.+.||+|+||.||+|...+    ...+++|...... ....+.+.+|+.+++.++|||++++++++.. +..+
T Consensus         4 ~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~-~~~~   82 (270)
T cd05056           4 QREDITLGRCIGEGQFGDVYQGVYMSPENEKIAVAVKTCKNCTSPSVREKFLQEAYIMRQFDHPHIVKLIGVITE-NPVW   82 (270)
T ss_pred             chhhceeeeeeCCccceeEEEEEEecCCCCCcceEEEecCCcCCHHHHHHHHHHHHHHHhCCCCchhceeEEEcC-CCcE
Confidence            44678888999999999999998643    3468999876544 4555789999999999999999999998875 4578


Q ss_pred             EEEecCCCCCC-----------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCc
Q 047066          177 LVNEFVKLPTI-----------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDET  232 (256)
Q Consensus       177 lv~e~~~~~~l-----------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~  232 (256)
                      ++|||+++++|           ++.....++.+++             +||+|+||+++.++.+||+|||+++.......
T Consensus        83 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~~~H~dl~p~nili~~~~~~~l~d~g~~~~~~~~~~  162 (270)
T cd05056          83 IVMELAPLGELRSYLQVNKYSLDLASLILYSYQLSTALAYLESKRFVHRDIAARNVLVSSPDCVKLGDFGLSRYLEDESY  162 (270)
T ss_pred             EEEEcCCCCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhCCeeccccChheEEEecCCCeEEccCceeeecccccc
Confidence            99999987654           4444455555544             59999999999999999999999987654432


Q ss_pred             eeeeeeeecccc----cccccCCCCCCC
Q 047066          233 QLSTMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       233 ~~~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      ...+...+++.|    .+....++.++|
T Consensus       163 ~~~~~~~~~~~y~aPE~~~~~~~~~~~D  190 (270)
T cd05056         163 YKASKGKLPIKWMAPESINFRRFTSASD  190 (270)
T ss_pred             eecCCCCccccccChhhhccCCCCchhh
Confidence            222222244556    444556677766

Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions

>KOG0033 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=99.80  E-value=2.7e-21  Score=152.31  Aligned_cols=152  Identities=20%  Similarity=0.241  Sum_probs=117.9

Q ss_pred             cCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecc--cChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEE
Q 047066          103 TNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRI--VYQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVN  179 (256)
Q Consensus       103 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~--~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~  179 (256)
                      .+.|++.++||+|.|+.|+++... +|+.+|+|.+..  ......+.+.+|+.+.+.|+||||+++.+...+....++|+
T Consensus        10 ~d~y~l~e~igkG~FSvVrRc~~~~tg~~fa~kiin~~k~~~~~~e~l~rEarIC~~LqHP~IvrL~~ti~~~~~~ylvF   89 (355)
T KOG0033|consen   10 SDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLVF   89 (355)
T ss_pred             chhhhHHHHHccCchHHHHHHHhccchHHHHHHHhhhhhhccccHHHHHHHHHHHHhcCCCcEeehhhhhcccceeEEEE
Confidence            367888899999999999998854 788899887643  23345678899999999999999999999999999999999


Q ss_pred             ecCCCCCCCH----------HHHHHHHHH-------------HHhccCCCcEEEc---CCCcEEEEecCCceecCCCCce
Q 047066          180 EFVKLPTISW----------EVRIRIAAE-------------TAEDIKSINILLD---DNYTTKVCDFGASKLVPIDETQ  233 (256)
Q Consensus       180 e~~~~~~l~~----------~~~~~~~~~-------------i~rdlk~~NiLi~---~~~~~ki~DFGla~~~~~~~~~  233 (256)
                      |++.++.|-.          ...-+...|             ++||+||+|+|+.   ...-+||+|||+|..++  ...
T Consensus        90 e~m~G~dl~~eIV~R~~ySEa~aSH~~rQiLeal~yCH~n~IvHRDvkP~nllLASK~~~A~vKL~~FGvAi~l~--~g~  167 (355)
T KOG0033|consen   90 DLVTGGELFEDIVAREFYSEADASHCIQQILEALAYCHSNGIVHRDLKPENLLLASKAKGAAVKLADFGLAIEVN--DGE  167 (355)
T ss_pred             ecccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCceeccCChhheeeeeccCCCceeecccceEEEeC--Ccc
Confidence            9999988732          222233333             4589999999994   33479999999999987  333


Q ss_pred             eeeeeeecccc----cccccCCCCCCC
Q 047066          234 LSTMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       234 ~~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      ......|||+|    .+...+|+..+|
T Consensus       168 ~~~G~~GtP~fmaPEvvrkdpy~kpvD  194 (355)
T KOG0033|consen  168 AWHGFAGTPGYLSPEVLKKDPYSKPVD  194 (355)
T ss_pred             ccccccCCCcccCHHHhhcCCCCCcch
Confidence            34556799999    555555555444

>cd07847 STKc_CDKL1_4 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4

Probab=99.80  E-value=1.1e-18  Score=145.77  Aligned_cols=152  Identities=25%  Similarity=0.300  Sum_probs=117.0

Q ss_pred             CCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC--hhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEe
Q 047066          104 NNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY--QSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNE  180 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e  180 (256)
                      ++|+..+.||+|++|.||++..+ +++.+|+|.+....  ....+.+.+|+.+++.++|||++++++++...+..+++||
T Consensus         1 ~~y~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~~v~e   80 (286)
T cd07847           1 EKYEKLSKIGEGSYGVVFKCRNRETGQIVAIKKFVESEDDPVIKKIALREIRMLKQLKHPNLVNLIEVFRRKRKLHLVFE   80 (286)
T ss_pred             CceeeeeeecccCCeEEEEEEECCCCcEEEEEEEeecccCccccHHHHHHHHHHHhCCCCCEeeeeeEEeeCCEEEEEEe
Confidence            36888899999999999999976 58899999875432  2233567899999999999999999999999999999999


Q ss_pred             cCCCCC----------CCHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceeeee
Q 047066          181 FVKLPT----------ISWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTM  237 (256)
Q Consensus       181 ~~~~~~----------l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~~  237 (256)
                      |++++.          +++.....++.|++             +||+|+||++++++.+||+|||++..+...... ...
T Consensus        81 ~~~~~~l~~~~~~~~~~~~~~~~~~~~ql~~~l~~LH~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~-~~~  159 (286)
T cd07847          81 YCDHTVLNELEKNPRGVPEHLIKKIIWQTLQAVNFCHKHNCIHRDVKPENILITKQGQIKLCDFGFARILTGPGDD-YTD  159 (286)
T ss_pred             ccCccHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHCCceecCCChhhEEEcCCCcEEECccccceecCCCccc-ccC
Confidence            998743          45666666666655             699999999999999999999999877543321 112


Q ss_pred             eeecccc----ccc-ccCCCCCCC
Q 047066          238 VQGTLGY----YLH-TSQGTLNKE  256 (256)
Q Consensus       238 ~~Gt~~y----~~~-~~~~t~ksD  256 (256)
                      ..|+..|    .+. ...++.++|
T Consensus       160 ~~~~~~~~aPE~~~~~~~~~~~~D  183 (286)
T cd07847         160 YVATRWYRAPELLVGDTQYGPPVD  183 (286)
T ss_pred             cccccccCCHHHHhCCCCcCchhh
Confidence            2356666    222 245677766

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The functio

>cd07878 STKc_p38beta_MAPK11 Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase

Probab=99.80  E-value=4.8e-19  Score=152.26  Aligned_cols=149  Identities=19%  Similarity=0.262  Sum_probs=114.1

Q ss_pred             CCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC--hhHHHHHHHHHHHHHhCCCCcccceeeEEEEC------CE
Q 047066          104 NNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY--QSQIEQCINKVVVLSQINHRNVVGLLGCCLET------EV  174 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~------~~  174 (256)
                      ++|++.+.||+|+||.||+|... ++..||+|.+....  ......+.+|+.+++.++||||+++++++...      ..
T Consensus        15 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~   94 (343)
T cd07878          15 ERYQNLTPVGSGAYGSVCSAYDTRLRQKVAVKKLSRPFQSLIHARRTYRELRLLKHMKHENVIGLLDVFTPATSIENFNE   94 (343)
T ss_pred             hhhhhheecccCCCeEEEEEEECCCCCEEEEEEeCchhhhhHHHHHHHHHHHHHHhcCCCchhhhhhhhcccccccccCc
Confidence            68999999999999999999864 67899999886432  22345678999999999999999999987532      45


Q ss_pred             EEEEEecCCC--------CCCCHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCce
Q 047066          175 PLLVNEFVKL--------PTISWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQ  233 (256)
Q Consensus       175 ~~lv~e~~~~--------~~l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~  233 (256)
                      .++++|++.+        +.++......++.|++             |||||+|||+++++.+||+|||+++......  
T Consensus        95 ~~~~~~~~~~~l~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrdikp~Nil~~~~~~~kl~Dfg~~~~~~~~~--  172 (343)
T cd07878          95 VYLVTNLMGADLNNIVKCQKLSDEHVQFLIYQLLRGLKYIHSAGIIHRDLKPSNVAVNEDCELRILDFGLARQADDEM--  172 (343)
T ss_pred             EEEEeecCCCCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeecccCChhhEEECCCCCEEEcCCccceecCCCc--
Confidence            7899998743        3455555556665554             6999999999999999999999998764332  


Q ss_pred             eeeeeeecccc----ccc-ccCCCCCCC
Q 047066          234 LSTMVQGTLGY----YLH-TSQGTLNKE  256 (256)
Q Consensus       234 ~~~~~~Gt~~y----~~~-~~~~t~ksD  256 (256)
                        ....||+.|    .+. ...++.++|
T Consensus       173 --~~~~~t~~y~aPE~~~~~~~~~~~~D  198 (343)
T cd07878         173 --TGYVATRWYRAPEIMLNWMHYNQTVD  198 (343)
T ss_pred             --CCccccccccCchHhcCCccCCchhh
Confidence              233588888    222 245777776

Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is

>cd07870 STKc_PFTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-2 kinase

Probab=99.80  E-value=8.6e-19  Score=147.13  Aligned_cols=141  Identities=21%  Similarity=0.243  Sum_probs=107.9

Q ss_pred             cCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC-hhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEe
Q 047066          103 TNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY-QSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNE  180 (256)
Q Consensus       103 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e  180 (256)
                      .++|.+.+.||+|+||.||+|... ++..+++|.+.... ......+.+|+.+++.++|+||+++.+++...+..++++|
T Consensus         4 ~~~y~~~~~ig~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~lv~e   83 (291)
T cd07870           4 ATSYLNLEKLGEGSYATVYKGISRINGQLVALKVISMKTEEGVPFTAIREASLLKGLKHANIVLLHDIIHTKETLTFVFE   83 (291)
T ss_pred             cceeEEEEEEEecCCEEEEEEEEcCCCcEEEEEEecccCcCCCcHHHHHHHHHHHhcCCCCEeEEEEEEecCCeEEEEEe
Confidence            467999999999999999999864 68899999876433 2223457789999999999999999999999999999999


Q ss_pred             cCCCCC----------CCHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceeeee
Q 047066          181 FVKLPT----------ISWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTM  237 (256)
Q Consensus       181 ~~~~~~----------l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~~  237 (256)
                      |+.+..          +.+.....++.|++             +||||+||+++.++.+||+|||+++......... ..
T Consensus        84 ~~~~~l~~~~~~~~~~~~~~~~~~~~~qi~~~L~~lH~~~i~H~dlkp~Nil~~~~~~~~l~Dfg~~~~~~~~~~~~-~~  162 (291)
T cd07870          84 YMHTDLAQYMIQHPGGLHPYNVRLFMFQLLRGLAYIHGQHILHRDLKPQNLLISYLGELKLADFGLARAKSIPSQTY-SS  162 (291)
T ss_pred             cccCCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCChHHEEEcCCCcEEEeccccccccCCCCCCC-CC
Confidence            996532          23334444444443             6999999999999999999999998653322211 22


Q ss_pred             eeecccc
Q 047066          238 VQGTLGY  244 (256)
Q Consensus       238 ~~Gt~~y  244 (256)
                      ..+++.|
T Consensus       163 ~~~~~~y  169 (291)
T cd07870         163 EVVTLWY  169 (291)
T ss_pred             ccccccc
Confidence            2366667

Serine/Threonine Kinases (STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-2 is also referred to as ALS2CR7 (amyotrophic lateral sclerosis 2 (juvenile) chromosome region candidate 7). It may be associated with amyotrophic lateral sclerosis 2 (ALS2), an autosomal recess

>cd05055 PTKc_PDGFR Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors

Probab=99.80  E-value=4.9e-19  Score=149.70  Aligned_cols=159  Identities=21%  Similarity=0.396  Sum_probs=119.9

Q ss_pred             HHHhhcCCCcccceeeeeCceEEEEEEEC------CCcEEEEEEecccC-hhHHHHHHHHHHHHHhC-CCCcccceeeEE
Q 047066           98 ELKIATNNYAYDRMIGRGGYGTVFLGSLS------DNKAIAIKKSRIVY-QSQIEQCINKVVVLSQI-NHRNVVGLLGCC  169 (256)
Q Consensus        98 ~~~~~~~~~~~~~~lg~G~~g~V~~~~~~------~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l-~h~niv~l~~~~  169 (256)
                      ++....++|.+.+.||+|+||.||++...      .+..+|+|.++... ....+.+.+|+.+++++ +||||+++++++
T Consensus        29 ~~~~~~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~  108 (302)
T cd05055          29 KWEFPRNNLSFGKTLGAGAFGKVVEATAYGLSKSDAVMKVAVKMLKPTAHSSEREALMSELKIMSHLGNHENIVNLLGAC  108 (302)
T ss_pred             cccccHHHeEEcceeeccCCeeEEEEEEecCCCCCceeEEEEEecCccCChHHHHHHHHHHHHHHhccCCCCcceEEEEE
Confidence            34556678999999999999999999741      34579999876543 34456789999999999 899999999999


Q ss_pred             EECCEEEEEEecCCCCCC------------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCc
Q 047066          170 LETEVPLLVNEFVKLPTI------------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGAS  224 (256)
Q Consensus       170 ~~~~~~~lv~e~~~~~~l------------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla  224 (256)
                      ...+..+++|||+.+++|            ++.....++.+++             +||||+|||++.++.+|++|||++
T Consensus       109 ~~~~~~~lv~e~~~~~~L~~~i~~~~~~~l~~~~~~~i~~~i~~~l~~lH~~~ivH~dlkp~Nil~~~~~~~~l~dfg~~  188 (302)
T cd05055         109 TIGGPILVITEYCCYGDLLNFLRRKRESFLTLEDLLSFSYQVAKGMAFLASKNCIHRDLAARNVLLTHGKIVKICDFGLA  188 (302)
T ss_pred             ecCCceEEEEEcCCCCcHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCeehhhhccceEEEcCCCeEEECCCccc
Confidence            999999999999987654            3444445555443             699999999999999999999999


Q ss_pred             eecCCCCcee-eeeeeecccc----cccccCCCCCCC
Q 047066          225 KLVPIDETQL-STMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       225 ~~~~~~~~~~-~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      +.+....... .....+++.|    .+..+.++.++|
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~D  225 (302)
T cd05055         189 RDIMNDSNYVVKGNARLPVKWMAPESIFNCVYTFESD  225 (302)
T ss_pred             ccccCCCceeecCCCCcccccCCHhhhccCCCCcHhH
Confidence            8765432211 1122355566    455566777766

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to recept

>cd05075 PTKc_Axl Catalytic domain of the Protein Tyrosine Kinase, Axl

Probab=99.80  E-value=7.3e-19  Score=145.92  Aligned_cols=150  Identities=25%  Similarity=0.479  Sum_probs=109.2

Q ss_pred             cccceeeeeCceEEEEEEECC-Cc--EEEEEEeccc--ChhHHHHHHHHHHHHHhCCCCcccceeeEEEEC------CEE
Q 047066          107 AYDRMIGRGGYGTVFLGSLSD-NK--AIAIKKSRIV--YQSQIEQCINKVVVLSQINHRNVVGLLGCCLET------EVP  175 (256)
Q Consensus       107 ~~~~~lg~G~~g~V~~~~~~~-~~--~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~------~~~  175 (256)
                      .+.+.||+|+||.||+|...+ +.  .+|+|.++..  .....+.+.+|+.+++.++||||+++++++...      ...
T Consensus         2 ~i~~~ig~G~~g~V~~~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~   81 (272)
T cd05075           2 ALGKTLGEGEFGSVMEGQLNQDDSILKVAVKTMKIAICTRSEMEDFLSEAVCMKEFDHPNVMRLIGVCLQTVESEGYPSP   81 (272)
T ss_pred             ccccccCcccCceEEEeEEccCCCeeeEEEEecccCcCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEccCCcccCCCCc
Confidence            466899999999999999754 32  5899977543  345567889999999999999999999987532      357


Q ss_pred             EEEEecCCCCCC----------------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCcee
Q 047066          176 LLVNEFVKLPTI----------------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKL  226 (256)
Q Consensus       176 ~lv~e~~~~~~l----------------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~  226 (256)
                      ++++||+++++|                ++.....++.|++             +||||+|||+++++.+||+|||+++.
T Consensus        82 ~~v~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~  161 (272)
T cd05075          82 VVILPFMKHGDLHSFLLYSRLGDCPQYLPTQMLVKFMTDIASGMEYLSSKSFIHRDLAARNCMLNENMNVCVADFGLSKK  161 (272)
T ss_pred             EEEEEeCCCCcHHHHHHHhcccCCcccCCHHHHHHHHHHHHHHHHHHHHCCeeccccchhheEEcCCCCEEECCCCcccc
Confidence            899999988764                3333444554444             69999999999999999999999987


Q ss_pred             cCCCCceee-eeeeecccc----cccccCCCCCCC
Q 047066          227 VPIDETQLS-TMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       227 ~~~~~~~~~-~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      +........ ....+++.|    +.....+++++|
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~D  196 (272)
T cd05075         162 IYNGDYYRQGRIAKMPVKWIAIESLADRVYTTKSD  196 (272)
T ss_pred             cCcccceecCCcccCCcccCCHHHccCCCcChHHH
Confidence            654332211 122345555    444555666665

Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transfor

>cd05099 PTKc_FGFR4 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4

Probab=99.80  E-value=5.4e-19  Score=150.15  Aligned_cols=159  Identities=17%  Similarity=0.305  Sum_probs=117.9

Q ss_pred             HHHhhcCCCcccceeeeeCceEEEEEEEC--------CCcEEEEEEecccC-hhHHHHHHHHHHHHHhC-CCCcccceee
Q 047066           98 ELKIATNNYAYDRMIGRGGYGTVFLGSLS--------DNKAIAIKKSRIVY-QSQIEQCINKVVVLSQI-NHRNVVGLLG  167 (256)
Q Consensus        98 ~~~~~~~~~~~~~~lg~G~~g~V~~~~~~--------~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l-~h~niv~l~~  167 (256)
                      +|..+.++|.+.+.||+|+||.||++...        ....+|+|.+.... ......+.+|+.+++.+ +||||+++++
T Consensus         6 ~~~~~~~~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~   85 (314)
T cd05099           6 KWEFPRDRLVLGKPLGEGCFGQVVRAEAYGIDKSRPDQTVTVAVKMLKDNATDKDLADLISEMELMKLIGKHKNIINLLG   85 (314)
T ss_pred             cccccHHHeeeeeeecCCCcccEEEeeecccCCccCCcceEEEEEecCCCCChHHHHHHHHHHHHHHhccCCCCeeeEEE
Confidence            45566678899999999999999999742        24578999876433 34456789999999999 6999999999


Q ss_pred             EEEECCEEEEEEecCCCCCCC--------------------------HHHHHHHHHHHH-------------hccCCCcE
Q 047066          168 CCLETEVPLLVNEFVKLPTIS--------------------------WEVRIRIAAETA-------------EDIKSINI  208 (256)
Q Consensus       168 ~~~~~~~~~lv~e~~~~~~l~--------------------------~~~~~~~~~~i~-------------rdlk~~Ni  208 (256)
                      ++...+..+++|||+.+++|.                          +...+.++.|++             +||||+||
T Consensus        86 ~~~~~~~~~lv~e~~~~g~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~lH~~gi~H~dlkp~Ni  165 (314)
T cd05099          86 VCTQEGPLYVIVEYAAKGNLREFLRARRPPGPDYTFDITKVPEEQLSFKDLVSCAYQVARGMEYLESRRCIHRDLAARNV  165 (314)
T ss_pred             EEccCCceEEEEecCCCCcHHHHHHhcCCCcccccccccCCcccccCHHHHHHHHHHHHHHHHHHHHCCeeeccccceeE
Confidence            999989999999999887653                          333334444544             69999999


Q ss_pred             EEcCCCcEEEEecCCceecCCCCcee-eeeeeecccc----cccccCCCCCCC
Q 047066          209 LLDDNYTTKVCDFGASKLVPIDETQL-STMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       209 Li~~~~~~ki~DFGla~~~~~~~~~~-~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      |+++++.+||+|||+++......... .....+++.|    .+..+.++.++|
T Consensus       166 ll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~D  218 (314)
T cd05099         166 LVTEDNVMKIADFGLARGVHDIDYYKKTSNGRLPVKWMAPEALFDRVYTHQSD  218 (314)
T ss_pred             EEcCCCcEEEccccccccccccccccccccCCCCccccCHHHHccCCcCccch
Confidence            99999999999999998764322111 1111233456    445566777776

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>KOG0610 consensus Putative serine/threonine protein kinase [General function prediction only]

Probab=99.80  E-value=1.1e-19  Score=152.53  Aligned_cols=127  Identities=20%  Similarity=0.238  Sum_probs=106.0

Q ss_pred             hhcCCCcccceeeeeCceEEEEEEECC-CcEEEEEEecccC---hhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEE
Q 047066          101 IATNNYAYDRMIGRGGYGTVFLGSLSD-NKAIAIKKSRIVY---QSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPL  176 (256)
Q Consensus       101 ~~~~~~~~~~~lg~G~~g~V~~~~~~~-~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~  176 (256)
                      +..++|++++.||.|.-|.||+++.++ ++.+|+|.+....   .....+...|-+||+.++||.++.|+..+..+...+
T Consensus        74 l~l~~f~llk~LG~GdiG~VyL~~l~~t~~~fAmKVmdK~~l~~rkKl~Ra~tE~eIL~~lDHPFlPTLYa~fet~~~~c  153 (459)
T KOG0610|consen   74 LGLRHFRLLKRLGCGDIGTVYLVELRGTNCLFAMKVMDKESLASRKKLKRAQTEREILSLLDHPFLPTLYASFETDKYSC  153 (459)
T ss_pred             cCHHHHHHHHHcCCCCceeEEEEEecCCCceEEEEEecHHHHhhhhHHHHHHHHHHHHHhcCCCccchhhheeeccceeE
Confidence            334568888999999999999999864 6899999886543   344467788999999999999999999999999999


Q ss_pred             EEEecCCCCCCCH-------------------------HHHHHHHHHHHhccCCCcEEEcCCCcEEEEecCCceec
Q 047066          177 LVNEFVKLPTISW-------------------------EVRIRIAAETAEDIKSINILLDDNYTTKVCDFGASKLV  227 (256)
Q Consensus       177 lv~e~~~~~~l~~-------------------------~~~~~~~~~i~rdlk~~NiLi~~~~~~ki~DFGla~~~  227 (256)
                      ++||||.||.|..                         ...+|+...|-|||||+||||.++|++-|+||.|+...
T Consensus       154 l~meyCpGGdL~~LrqkQp~~~fse~~aRFYaAEvl~ALEYLHmlGivYRDLKPENILvredGHIMLsDFDLS~~~  229 (459)
T KOG0610|consen  154 LVMEYCPGGDLHSLRQKQPGKRFSESAARFYAAEVLLALEYLHMLGIVYRDLKPENILVREDGHIMLSDFDLSLRC  229 (459)
T ss_pred             EEEecCCCccHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHhhceeeccCCcceeEEecCCcEEeeeccccccC
Confidence            9999999988732                         22344445555999999999999999999999998754

>cd06609 STKc_MST3_like Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases

Probab=99.80  E-value=1.2e-18  Score=144.86  Aligned_cols=151  Identities=23%  Similarity=0.279  Sum_probs=120.3

Q ss_pred             CCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC-hhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEecC
Q 047066          105 NYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY-QSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEFV  182 (256)
Q Consensus       105 ~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~  182 (256)
                      +|++.+.||.|++|.||+|... +++.+++|...... ......+.+|+.+++.++|||++++.+++......++++||+
T Consensus         2 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~   81 (274)
T cd06609           2 LFTLLECIGKGSFGEVYKAIDKRTNQVVAIKVIDLEEAEDEIEDIQQEIQFLSQCRSPYITKYYGSFLKGSKLWIIMEYC   81 (274)
T ss_pred             hhhhhhhhcCCCCeEEEEEEECCCCeEEEEEEeeccccchHHHHHHHHHHHHHHcCCCCeeeeeEEEEECCeEEEEEEee
Confidence            5788889999999999999965 68899999876443 344567889999999999999999999999999999999999


Q ss_pred             CCCCC---------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceeeeeeee
Q 047066          183 KLPTI---------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQG  240 (256)
Q Consensus       183 ~~~~l---------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~~~~G  240 (256)
                      ++++|         ++.....++.|++             +||+|+||++++++.++|+|||+++.+...... .....|
T Consensus        82 ~~~~L~~~~~~~~~~~~~~~~~~~ql~~~l~~lh~~~i~h~dl~p~ni~i~~~~~~~l~d~g~~~~~~~~~~~-~~~~~~  160 (274)
T cd06609          82 GGGSCLDLLKPGKLDETYIAFILREVLLGLEYLHEEGKIHRDIKAANILLSEEGDVKLADFGVSGQLTSTMSK-RNTFVG  160 (274)
T ss_pred             CCCcHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEEECCCCCEEEcccccceeecccccc-cccccC
Confidence            88654         4444455555444             699999999999999999999999887543221 223457


Q ss_pred             cccc----cccccCCCCCCC
Q 047066          241 TLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       241 t~~y----~~~~~~~t~ksD  256 (256)
                      ++.|    ++.+..++.++|
T Consensus       161 ~~~y~~PE~~~~~~~~~~sD  180 (274)
T cd06609         161 TPFWMAPEVIKQSGYDEKAD  180 (274)
T ss_pred             CccccChhhhccCCCCchhh
Confidence            7778    555666888887

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN)

>cd05046 PTK_CCK4 Pseudokinase domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4

Probab=99.80  E-value=8.1e-19  Score=145.97  Aligned_cols=154  Identities=21%  Similarity=0.299  Sum_probs=116.5

Q ss_pred             cCCCcccceeeeeCceEEEEEEEC------CCcEEEEEEecccChh-HHHHHHHHHHHHHhCCCCcccceeeEEEECCEE
Q 047066          103 TNNYAYDRMIGRGGYGTVFLGSLS------DNKAIAIKKSRIVYQS-QIEQCINKVVVLSQINHRNVVGLLGCCLETEVP  175 (256)
Q Consensus       103 ~~~~~~~~~lg~G~~g~V~~~~~~------~~~~vavK~~~~~~~~-~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~  175 (256)
                      .++|+..+.||+|+||.||+|..+      +...+++|........ ..+.+.+|+.++++++|||++++++++...+..
T Consensus         4 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~   83 (275)
T cd05046           4 RSNLQEITTLGRGEFGEVFLAKAKGIEEEGGETLVLVKALQKTKDENLQSEFRRELDMFRKLSHKNVVRLLGLCREAEPH   83 (275)
T ss_pred             hHhceeeeeecccceeEEEEEEeccCCcCCCcceEEEEccCCccchHHHHHHHHHHHHHHhcCCcceeeeEEEECCCCcc
Confidence            467888999999999999999854      2457899877654433 457799999999999999999999999988899


Q ss_pred             EEEEecCCCCCC-------------------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCC
Q 047066          176 LLVNEFVKLPTI-------------------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGA  223 (256)
Q Consensus       176 ~lv~e~~~~~~l-------------------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGl  223 (256)
                      +++|||+++++|                   ++.....++.+++             +||||+||+++.++.++++|||+
T Consensus        84 ~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~l~~LH~~~i~H~dlkp~Nili~~~~~~~l~~~~~  163 (275)
T cd05046          84 YMILEYTDLGDLKQFLRATKSKDEKLKPPPLSTKQKVALCTQIALGMDHLSNARFVHRDLAARNCLVSSQREVKVSLLSL  163 (275)
T ss_pred             eEEEEecCCCcHHHHHHhcccccccccccCCCHHHHHHHHHHHHHHHHHhhhcCcccCcCccceEEEeCCCcEEEccccc
Confidence            999999987554                   4444555555554             69999999999999999999999


Q ss_pred             ceecCCCCceeeeeeeecccc----cccccCCCCCCC
Q 047066          224 SKLVPIDETQLSTMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       224 a~~~~~~~~~~~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      ++..............+++.|    .+.++.+++++|
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~D  200 (275)
T cd05046         164 SKDVYNSEYYKLRNALIPLRWLAPEAVQEDDFSTKSD  200 (275)
T ss_pred             ccccCcccccccCCceeEEeecChhhhccCCCCchhh
Confidence            876543322222233455656    344555666665

Protein Tyrosine Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is s

>cd05098 PTKc_FGFR1 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1

Probab=99.80  E-value=4.6e-19  Score=150.05  Aligned_cols=159  Identities=18%  Similarity=0.327  Sum_probs=117.3

Q ss_pred             HHHhhcCCCcccceeeeeCceEEEEEEEC--------CCcEEEEEEecccC-hhHHHHHHHHHHHHHhC-CCCcccceee
Q 047066           98 ELKIATNNYAYDRMIGRGGYGTVFLGSLS--------DNKAIAIKKSRIVY-QSQIEQCINKVVVLSQI-NHRNVVGLLG  167 (256)
Q Consensus        98 ~~~~~~~~~~~~~~lg~G~~g~V~~~~~~--------~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l-~h~niv~l~~  167 (256)
                      .+++..++|.+.+.||+|+||.||++...        +...+|+|...... ......+..|+.+++.+ +||||+++++
T Consensus        12 ~~~~~~~~~~i~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~   91 (307)
T cd05098          12 RWEVPRDRLVLGKPLGEGCFGQVVMAEAIGLDKEKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLG   91 (307)
T ss_pred             cceeehHHeEEeeeeccCCCeeEEEeEEeccCCcccCccceEEEEeccCCCChHHHHHHHHHHHHHHHhcCCCCEeeEEE
Confidence            34555678999999999999999999742        23469999886542 34456788999999999 7999999999


Q ss_pred             EEEECCEEEEEEecCCCCCC--------------------------CHHHHHHHHHHHH-------------hccCCCcE
Q 047066          168 CCLETEVPLLVNEFVKLPTI--------------------------SWEVRIRIAAETA-------------EDIKSINI  208 (256)
Q Consensus       168 ~~~~~~~~~lv~e~~~~~~l--------------------------~~~~~~~~~~~i~-------------rdlk~~Ni  208 (256)
                      ++...+..+++|||+.+++|                          ++...+.++.+++             +||||+||
T Consensus        92 ~~~~~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~lH~~gi~H~dlkp~Ni  171 (307)
T cd05098          92 ACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYCYNPTQVPEEQLSFKDLVSCAYQVARGMEYLASKKCIHRDLAARNV  171 (307)
T ss_pred             EEecCCceEEEEecCCCCcHHHHHHhcCCcccccccccccCccccCCHHHHHHHHHHHHHHHHHHHHCCcccccccHHhe
Confidence            99999999999999987644                          3444445555544             69999999


Q ss_pred             EEcCCCcEEEEecCCceecCCCCceee-eeeeecccc----cccccCCCCCCC
Q 047066          209 LLDDNYTTKVCDFGASKLVPIDETQLS-TMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       209 Li~~~~~~ki~DFGla~~~~~~~~~~~-~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      ++++++.+||+|||+++.......... ....+++.|    .+.++.++.++|
T Consensus       172 ll~~~~~~kL~dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~D  224 (307)
T cd05098         172 LVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSD  224 (307)
T ss_pred             EEcCCCcEEECCCcccccccccchhhccccCCCccceeChHHhccCCCCcHHH
Confidence            999999999999999986543221111 111234456    344556676666

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd06624 STKc_ASK Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase

Probab=99.80  E-value=1.3e-18  Score=144.26  Aligned_cols=156  Identities=23%  Similarity=0.258  Sum_probs=115.6

Q ss_pred             HhhcCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEE
Q 047066          100 KIATNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLV  178 (256)
Q Consensus       100 ~~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv  178 (256)
                      +..++++.....||+|+||.||+|... ++..+++|.+........+.+.+|+.+++.++|+||+++++++...+..+++
T Consensus         4 ~~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv   83 (268)
T cd06624           4 EYEYDENGERVVLGKGTYGIVYAARDLSTQVRIAIKEIPERDSRYVQPLHEEIALHSYLKHRNIVQYLGSDSENGFFKIF   83 (268)
T ss_pred             ccccccCCceEEEecCCceEEEEeEecCCCcEEEEEEecCCCHHHHHHHHHHHHHHHhcCCCCeeeeeeeeccCCEEEEE
Confidence            344555556679999999999999865 5778999988766655667899999999999999999999999999999999


Q ss_pred             EecCCCCCCCHH-------------HHHHHHHHHH-------------hccCCCcEEEcC-CCcEEEEecCCceecCCCC
Q 047066          179 NEFVKLPTISWE-------------VRIRIAAETA-------------EDIKSINILLDD-NYTTKVCDFGASKLVPIDE  231 (256)
Q Consensus       179 ~e~~~~~~l~~~-------------~~~~~~~~i~-------------rdlk~~NiLi~~-~~~~ki~DFGla~~~~~~~  231 (256)
                      +||+.+++|...             ....++.|++             +||+|+||+++. ++.+||+|||++..+....
T Consensus        84 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~i~h~dl~p~nil~~~~~~~~~l~dfg~~~~~~~~~  163 (268)
T cd06624          84 MEQVPGGSLSALLRSKWGPLKDNEQTIIFYTKQILEGLKYLHDNQIVHRDIKGDNVLVNTYSGVVKISDFGTSKRLAGIN  163 (268)
T ss_pred             EecCCCCCHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHHCCEeecCCCHHHEEEcCCCCeEEEecchhheecccCC
Confidence            999998776432             2223333433             699999999986 6799999999998664322


Q ss_pred             ceeeeeeeecccc----ccccc--CCCCCCC
Q 047066          232 TQLSTMVQGTLGY----YLHTS--QGTLNKE  256 (256)
Q Consensus       232 ~~~~~~~~Gt~~y----~~~~~--~~t~ksD  256 (256)
                      .. .....|++.|    ++..+  .++.++|
T Consensus       164 ~~-~~~~~~~~~~~aPE~~~~~~~~~~~~~D  193 (268)
T cd06624         164 PC-TETFTGTLQYMAPEVIDKGPRGYGAPAD  193 (268)
T ss_pred             Cc-cccCCCCccccChhhhccccccCCchhh
Confidence            21 1122467777    22222  2566665

Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kina

>cd05050 PTKc_Musk Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase

Probab=99.80  E-value=3.5e-19  Score=149.28  Aligned_cols=155  Identities=23%  Similarity=0.327  Sum_probs=117.2

Q ss_pred             hcCCCcccceeeeeCceEEEEEEEC------CCcEEEEEEecccC-hhHHHHHHHHHHHHHhCCCCcccceeeEEEECCE
Q 047066          102 ATNNYAYDRMIGRGGYGTVFLGSLS------DNKAIAIKKSRIVY-QSQIEQCINKVVVLSQINHRNVVGLLGCCLETEV  174 (256)
Q Consensus       102 ~~~~~~~~~~lg~G~~g~V~~~~~~------~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~  174 (256)
                      ..++|++.+.||+|+||.||++..+      ++..+|+|.+.... ......+.+|+.++++++|||++++++++...+.
T Consensus         3 ~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~ei~~l~~l~h~~iv~~~~~~~~~~~   82 (288)
T cd05050           3 PRNNIEYVRDIGQGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDHPNIVKLLGVCAVGKP   82 (288)
T ss_pred             ChHhceecccccccccccEEEEEEcccCCCCcceeEEEEecCCCcCHHHHHHHHHHHHHHHhcCCCchheEEEEEcCCCc
Confidence            4567899999999999999999853      46789999876543 3445678899999999999999999999999889


Q ss_pred             EEEEEecCCCCCCCHH--------------------------------HHHHHHHHHH-------------hccCCCcEE
Q 047066          175 PLLVNEFVKLPTISWE--------------------------------VRIRIAAETA-------------EDIKSINIL  209 (256)
Q Consensus       175 ~~lv~e~~~~~~l~~~--------------------------------~~~~~~~~i~-------------rdlk~~NiL  209 (256)
                      .++++||+.+++|...                                ..+.++.+++             +||+|+||+
T Consensus        83 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~aL~~lH~~~i~H~dl~p~nil  162 (288)
T cd05050          83 MCLLFEYMAYGDLNEFLRHRSPRAQCSLSHSTSSARKCGLNPLPLSCTEQLCIAKQVAAGMAYLSERKFVHRDLATRNCL  162 (288)
T ss_pred             cEEEEecCCCCCHHHHHHHcCccccccccccccccccccccccccCHHHHHHHHHHHHHHHHHHHhCCeecccccHhheE
Confidence            9999999988765322                                2344555444             699999999


Q ss_pred             EcCCCcEEEEecCCceecCCCCcee-eeeeeecccc----cccccCCCCCCC
Q 047066          210 LDDNYTTKVCDFGASKLVPIDETQL-STMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       210 i~~~~~~ki~DFGla~~~~~~~~~~-~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      ++.++.+||+|||+++.+....... .....+++.|    ...++.++.++|
T Consensus       163 ~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~D  214 (288)
T cd05050         163 VGENMVVKIADFGLSRNIYSADYYKASENDAIPIRWMPPESIFYNRYTTESD  214 (288)
T ss_pred             ecCCCceEECccccceecccCccccccCCCccChhhcCHHHHhcCCCCchhH
Confidence            9999999999999998654332111 1112244556    445566777776

Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates M

>cd06612 STKc_MST1_2 Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

Probab=99.80  E-value=9.7e-19  Score=143.76  Aligned_cols=151  Identities=22%  Similarity=0.307  Sum_probs=120.5

Q ss_pred             cCCCcccceeeeeCceEEEEEEECC-CcEEEEEEecccChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEec
Q 047066          103 TNNYAYDRMIGRGGYGTVFLGSLSD-NKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEF  181 (256)
Q Consensus       103 ~~~~~~~~~lg~G~~g~V~~~~~~~-~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~  181 (256)
                      .++|++.+.||+|+||.||++...+ +..+++|.+.....  .+++.+|+.+++.++|||++++++.+......++++||
T Consensus         2 ~~~y~~~~~i~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~--~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~l~~e~   79 (256)
T cd06612           2 EEVFDILEKLGEGSYGSVYKAIHKETGQVVAIKVVPVEED--LQEIIKEISILKQCDSPYIVKYYGSYFKNTDLWIVMEY   79 (256)
T ss_pred             cccchhhhhhcCCCCeEEEEEEEcCCCcEEEEEEeecHHH--HHHHHHHHHHHHhCCCCcEeeeeeeeecCCcEEEEEec
Confidence            3678899999999999999999764 78999998765432  57899999999999999999999999999999999999


Q ss_pred             CCCCCC-----------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceeeee
Q 047066          182 VKLPTI-----------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTM  237 (256)
Q Consensus       182 ~~~~~l-----------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~~  237 (256)
                      +.+++|           ++.....++.+++             +||+|+||+++.++.+||+|||++........ ....
T Consensus        80 ~~~~~L~~~l~~~~~~l~~~~~~~~~~~l~~~l~~lh~~~i~H~dl~~~ni~~~~~~~~~l~dfg~~~~~~~~~~-~~~~  158 (256)
T cd06612          80 CGAGSVSDIMKITNKTLTEEEIAAILYQTLKGLEYLHSNKKIHRDIKAGNILLNEEGQAKLADFGVSGQLTDTMA-KRNT  158 (256)
T ss_pred             CCCCcHHHHHHhCccCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCcceEEECCCCcEEEcccccchhcccCcc-cccc
Confidence            987654           4444455555544             69999999999999999999999987654322 1223


Q ss_pred             eeecccc----cccccCCCCCCC
Q 047066          238 VQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       238 ~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      ..|+..|    .+.+..++.++|
T Consensus       159 ~~~~~~y~~PE~~~~~~~~~~~D  181 (256)
T cd06612         159 VIGTPFWMAPEVIQEIGYNNKAD  181 (256)
T ss_pred             ccCCccccCHHHHhcCCCCchhh
Confidence            4477778    555667777776

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a

>cd07867 STKc_CDC2L6 Catalytic domain of Serine/Threonine Kinase, Cell Division Cycle 2-like 6

Probab=99.80  E-value=9.4e-19  Score=148.59  Aligned_cols=145  Identities=21%  Similarity=0.268  Sum_probs=108.0

Q ss_pred             ceeeeeCceEEEEEEEC---CCcEEEEEEecccChhHHHHHHHHHHHHHhCCCCcccceeeEEEE--CCEEEEEEecCCC
Q 047066          110 RMIGRGGYGTVFLGSLS---DNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLE--TEVPLLVNEFVKL  184 (256)
Q Consensus       110 ~~lg~G~~g~V~~~~~~---~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~--~~~~~lv~e~~~~  184 (256)
                      ..||+|+||.||+|..+   ++..+|+|.+....  ....+.+|+.+++.++||||+++++++..  ....++++||+.+
T Consensus         7 ~~lG~G~~g~Vy~~~~~~~~~~~~~a~k~~~~~~--~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~lv~e~~~~   84 (317)
T cd07867           7 CKVGRGTYGHVYKAKRKDGKDEKEYALKQIEGTG--ISMSACREIALLRELKHPNVIALQKVFLSHSDRKVWLLFDYAEH   84 (317)
T ss_pred             eEeccCCCeeEEEEEecCCCccceEEEEEecCCC--CcHHHHHHHHHHHhCCCCCeeeEEEEEeccCCCeEEEEEeeeCC
Confidence            57999999999999864   35789999876433  22457789999999999999999998864  5678999999875


Q ss_pred             C------------------CCCHHHHHHHHHHHH-------------hccCCCcEEE----cCCCcEEEEecCCceecCC
Q 047066          185 P------------------TISWEVRIRIAAETA-------------EDIKSINILL----DDNYTTKVCDFGASKLVPI  229 (256)
Q Consensus       185 ~------------------~l~~~~~~~~~~~i~-------------rdlk~~NiLi----~~~~~~ki~DFGla~~~~~  229 (256)
                      .                  .+++.....++.|++             |||||+|||+    +.++.+||+|||+++....
T Consensus        85 ~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~lH~~~ivH~Dlkp~Nil~~~~~~~~~~~kl~DfG~a~~~~~  164 (317)
T cd07867          85 DLWHIIKFHRASKANKKPMQLPRSMVKSLLYQILDGIHYLHANWVLHRDLKPANILVMGEGPERGRVKIADMGFARLFNS  164 (317)
T ss_pred             cHHHHHHhhhccccCCCCccCCHHHHHHHHHHHHHHHHHHHhCCEEcCCCCHHHEEEccCCCCCCcEEEeeccceeccCC
Confidence            3                  244555555665555             6999999999    5667999999999987654


Q ss_pred             CCce--eeeeeeecccc----cccc-cCCCCCCC
Q 047066          230 DETQ--LSTMVQGTLGY----YLHT-SQGTLNKE  256 (256)
Q Consensus       230 ~~~~--~~~~~~Gt~~y----~~~~-~~~t~ksD  256 (256)
                      ....  ......||+.|    .+.+ ..++.++|
T Consensus       165 ~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~D  198 (317)
T cd07867         165 PLKPLADLDPVVVTFWYRAPELLLGARHYTKAID  198 (317)
T ss_pred             CcccccccCcceecccccCcHHhcCCCccCcHHH
Confidence            3222  12335688888    2333 45677776

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 6 (CDC2L6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L6 is also called CDK8-like and was previously referred to as CDK11. However, this is a confusing nomenclature as CDC2L6 is distinct from CDC2L1, which is represented by the two protein products from its gene, called CDK11(p110) and CDK11(p58), as well as

>KOG0200 consensus Fibroblast/platelet-derived growth factor receptor and related receptor tyrosine kinases [Signal transduction mechanisms]

Probab=99.80  E-value=4.5e-19  Score=162.68  Aligned_cols=159  Identities=22%  Similarity=0.342  Sum_probs=131.0

Q ss_pred             HHHhhcCCCcccceeeeeCceEEEEEEEC----C----CcEEEEEEecccC-hhHHHHHHHHHHHHHhC-CCCcccceee
Q 047066           98 ELKIATNNYAYDRMIGRGGYGTVFLGSLS----D----NKAIAIKKSRIVY-QSQIEQCINKVVVLSQI-NHRNVVGLLG  167 (256)
Q Consensus        98 ~~~~~~~~~~~~~~lg~G~~g~V~~~~~~----~----~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l-~h~niv~l~~  167 (256)
                      .|+++.+++.+.+.+|+|.||+|++|...    .    ...||||.++... ..+.+.+..|+++|+.+ +|+||+.+.|
T Consensus       290 ~~e~~~~~l~~~~~lg~g~fG~v~~~~~~~~~~~~~~~~~~VaVK~~k~~~~~~~~~~~~~El~~m~~~g~H~niv~llG  369 (609)
T KOG0200|consen  290 KWEIPRENLKLGKYLGEGAFGQVVKALLFGLSKALLSIYVTVAVKMLKENASSSEKKDLMSELNVLKELGKHPNIVNLLG  369 (609)
T ss_pred             ceeechhhccccceeecccccceEeEEEeecccccccceEEEEEEecccccCcHHHHHHHHHHHHHHHhcCCcchhhhee
Confidence            78889999988899999999999999732    1    4579999887543 45678899999999999 7999999999


Q ss_pred             EEEECCEEEEEEecCCCCC--------------------------CCHHHHHHHHHHHH-------------hccCCCcE
Q 047066          168 CCLETEVPLLVNEFVKLPT--------------------------ISWEVRIRIAAETA-------------EDIKSINI  208 (256)
Q Consensus       168 ~~~~~~~~~lv~e~~~~~~--------------------------l~~~~~~~~~~~i~-------------rdlk~~Ni  208 (256)
                      +|..++..++++||++.|.                          |...+.+.++.|||             |||.++||
T Consensus       370 ~~t~~~~~~~v~Ey~~~G~L~~~Lr~~r~~~~~~~~~~~~~~~~~L~~~dLlsfa~QIa~GMe~L~~~~~vHRDLAaRNV  449 (609)
T KOG0200|consen  370 ACTQDGPLYVIVEYAEHGDLLEFLRKKRVTESIDGSGVFPNERDALTTKDLLSFAYQIANGMEYLASVPCVHRDLAARNV  449 (609)
T ss_pred             eeccCCceEEEEEeccCCcHHHHHHhccccccccccCCCccccCCcCHHHHHHHHHHHHHHHHHHhhCCccchhhhhhhE
Confidence            9999999999999997744                          55566777888877             69999999


Q ss_pred             EEcCCCcEEEEecCCceecCCCCceeeeeeeeccc--c----cccccCCCCCCC
Q 047066          209 LLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTLG--Y----YLHTSQGTLNKE  256 (256)
Q Consensus       209 Li~~~~~~ki~DFGla~~~~~~~~~~~~~~~Gt~~--y----~~~~~~~t~ksD  256 (256)
                      |++++..+||+|||+|+....+..+....-.|+..  |    .+....||.|||
T Consensus       450 Li~~~~~~kIaDFGlar~~~~~~~y~~~~~~~~LP~kWmApEsl~~~~ft~kSD  503 (609)
T KOG0200|consen  450 LITKNKVIKIADFGLARDHYNKDYYRTKSSAGTLPVKWMAPESLFDRVFTSKSD  503 (609)
T ss_pred             EecCCCEEEEccccceeccCCCCceEecCCCCccceeecCHHHhccCcccccch
Confidence            99999999999999999877666655443334444  4    555688899988

>cd06638 STKc_myosinIIIA Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIA myosin

Probab=99.80  E-value=7.5e-19  Score=146.99  Aligned_cols=159  Identities=22%  Similarity=0.240  Sum_probs=118.1

Q ss_pred             hHHHHhhcCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccChhHHHHHHHHHHHHHhC-CCCcccceeeEEE---
Q 047066           96 AGELKIATNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVYQSQIEQCINKVVVLSQI-NHRNVVGLLGCCL---  170 (256)
Q Consensus        96 ~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~---  170 (256)
                      .+.+..+.++|++.+.||+|+||.||++... +++.+++|....... ..+.+.+|+.+++.+ +|||++++++++.   
T Consensus        10 ~~~~~~~~~~~~~~~~lg~g~~~~vy~~~~~~~~~~~~ik~~~~~~~-~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~   88 (286)
T cd06638          10 FDSFPDPSDTWEIIETIGKGTYGKVFKVLNKKNGSKAAVKILDPIHD-IDEEIEAEYNILKALSDHPNVVKFYGMYYKKD   88 (286)
T ss_pred             eecCCCcccceeeeeeeccCCCcEEEEEEECCCCceeEEEeeccccc-hHHHHHHHHHHHHHHhcCCCeeeeeeeeeecc
Confidence            3455567789999999999999999999865 578999998754322 235678899999999 7999999999885   


Q ss_pred             --ECCEEEEEEecCCCCCCCHH--------------HHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEec
Q 047066          171 --ETEVPLLVNEFVKLPTISWE--------------VRIRIAAETA-------------EDIKSINILLDDNYTTKVCDF  221 (256)
Q Consensus       171 --~~~~~~lv~e~~~~~~l~~~--------------~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DF  221 (256)
                        ..+..+++|||+++++|...              ....++.+++             +||+|+||++++++.+||+||
T Consensus        89 ~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~nili~~~~~~kl~df  168 (286)
T cd06638          89 VKNGDQLWLVLELCNGGSVTDLVKGFLKRGERMEEPIIAYILHEALMGLQHLHVNKTIHRDVKGNNILLTTEGGVKLVDF  168 (286)
T ss_pred             cCCCCeEEEEEeecCCCCHHHHHHHhhccCccccHHHHHHHHHHHHHHHHHHHhCCccccCCCHHhEEECCCCCEEEccC
Confidence              34568999999998876432              1223344433             699999999999999999999


Q ss_pred             CCceecCCCCceeeeeeeecccc----cc-----cccCCCCCCC
Q 047066          222 GASKLVPIDETQLSTMVQGTLGY----YL-----HTSQGTLNKE  256 (256)
Q Consensus       222 Gla~~~~~~~~~~~~~~~Gt~~y----~~-----~~~~~t~ksD  256 (256)
                      |+++.+...... .....|++.|    ++     .+..++.++|
T Consensus       169 g~~~~~~~~~~~-~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~D  211 (286)
T cd06638         169 GVSAQLTSTRLR-RNTSVGTPFWMAPEVIACEQQLDSTYDARCD  211 (286)
T ss_pred             CceeecccCCCc-cccccCCCcccChhhhchhhhccccccchhh
Confidence            999876533222 2234588888    22     1344677776

Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear

>cd06620 PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases

Probab=99.80  E-value=7.9e-19  Score=146.92  Aligned_cols=151  Identities=22%  Similarity=0.274  Sum_probs=117.9

Q ss_pred             cCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC-hhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEe
Q 047066          103 TNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY-QSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNE  180 (256)
Q Consensus       103 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e  180 (256)
                      .++|++.+.||+|+||.||++... +++.+|+|.+.... ......+.+|+++++.++||||+++++.+...+..++++|
T Consensus         4 ~~~~~~~~~ig~g~~g~v~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   83 (284)
T cd06620           4 NEDLETISDLGAGNGGSVSKVKHIPTGTVMAKKVVHIGAKSSVRKQILRELQIMHECRSPYIVSFYGAFLNENNICMCME   83 (284)
T ss_pred             HHHHHHHHHcCCCCCeEEEEEEEcCCCcEEEEEEEEecCcchHHHHHHHHHHHHHHcCCCCcceEeeeEecCCEEEEEEe
Confidence            357888899999999999999865 58889999875443 3445788999999999999999999999999999999999


Q ss_pred             cCCCCCCC----------HHHHHHHHHH--------------HHhccCCCcEEEcCCCcEEEEecCCceecCCCCceeee
Q 047066          181 FVKLPTIS----------WEVRIRIAAE--------------TAEDIKSINILLDDNYTTKVCDFGASKLVPIDETQLST  236 (256)
Q Consensus       181 ~~~~~~l~----------~~~~~~~~~~--------------i~rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~  236 (256)
                      |+++++|.          +.....++.+              +++||+|+||++++++.++|+|||++........   .
T Consensus        84 ~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~i~H~dl~p~nil~~~~~~~~l~d~gl~~~~~~~~~---~  160 (284)
T cd06620          84 FMDCGSLDRIYKKGGPIPVEILGKIAVAVVEGLTYLYNVHRIMHRDIKPSNILVNSRGQIKLCDFGVSGELINSIA---D  160 (284)
T ss_pred             cCCCCCHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHhcCeeccCCCHHHEEECCCCcEEEccCCcccchhhhcc---C
Confidence            99987763          2222222222              4479999999999999999999999876532221   2


Q ss_pred             eeeecccc----cccccCCCCCCC
Q 047066          237 MVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       237 ~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      ...||..|    .+.++.++.++|
T Consensus       161 ~~~~~~~~~aPE~~~~~~~~~~~D  184 (284)
T cd06620         161 TFVGTSTYMSPERIQGGKYTVKSD  184 (284)
T ss_pred             ccccCcccCCHHHHccCCCCccch
Confidence            34578888    455667777776

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd06652 STKc_MEKK2 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 2

Probab=99.80  E-value=1.4e-18  Score=143.91  Aligned_cols=153  Identities=22%  Similarity=0.302  Sum_probs=115.0

Q ss_pred             CCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC-----hhHHHHHHHHHHHHHhCCCCcccceeeEEEE--CCEE
Q 047066          104 NNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY-----QSQIEQCINKVVVLSQINHRNVVGLLGCCLE--TEVP  175 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~-----~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~--~~~~  175 (256)
                      .+|++.+.||+|+||.||.+..+ ++..|++|.+....     ....+.+.+|+.+++.++||||+++++++.+  ...+
T Consensus         2 ~~~~~~~~l~~g~~g~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~   81 (265)
T cd06652           2 TNWRLGKLLGQGAFGRVYLCYDADTGRELAVKQVQFDPESPETSKEVNALECEIQLLKNLLHERIVQYYGCLRDPMERTL   81 (265)
T ss_pred             CcceEeeEEecCCceEEEEEEEcCCCcEEEEEEeecCcCCcccHHHHHHHHHHHHHHHhcCCCCeeeEEeEeccCCCceE
Confidence            47888999999999999999865 58899999875321     2334678899999999999999999998876  3568


Q ss_pred             EEEEecCCCCCCC----------HHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCc
Q 047066          176 LLVNEFVKLPTIS----------WEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDET  232 (256)
Q Consensus       176 ~lv~e~~~~~~l~----------~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~  232 (256)
                      +++|||+++++|.          +...+.++.+++             +||+|+||+++.++.+||+|||+++.......
T Consensus        82 ~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~l~~~l~~lH~~~i~H~dl~p~nil~~~~~~~~l~Dfg~~~~~~~~~~  161 (265)
T cd06652          82 SIFMEHMPGGSIKDQLKSYGALTENVTRKYTRQILEGVSYLHSNMIVHRDIKGANILRDSVGNVKLGDFGASKRLQTICL  161 (265)
T ss_pred             EEEEEecCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHEEecCCCCEEECcCccccccccccc
Confidence            8999999987653          233344455444             59999999999999999999999986542211


Q ss_pred             e--eeeeeeecccc----cccccCCCCCCC
Q 047066          233 Q--LSTMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       233 ~--~~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      .  ......|+..|    ...+..++.++|
T Consensus       162 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~D  191 (265)
T cd06652         162 SGTGMKSVTGTPYWMSPEVISGEGYGRKAD  191 (265)
T ss_pred             cccccccCCCCccccChhhhcCCCCCcchh
Confidence            1  11223477777    444556777776

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2 (MEKK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK2 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK2 also activates ERK1/2, c-Jun N-terminal kinase (JNK) and p38 through their re

>cd05045 PTKc_RET Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein

Probab=99.80  E-value=6.8e-19  Score=147.74  Aligned_cols=152  Identities=22%  Similarity=0.347  Sum_probs=112.7

Q ss_pred             CCcccceeeeeCceEEEEEEEC------CCcEEEEEEecccC-hhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEE
Q 047066          105 NYAYDRMIGRGGYGTVFLGSLS------DNKAIAIKKSRIVY-QSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLL  177 (256)
Q Consensus       105 ~~~~~~~lg~G~~g~V~~~~~~------~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~l  177 (256)
                      +|++.+.||+|+||.||+|...      ....+++|.+.... ....+++.+|+.+++.++||||+++++.+...+..++
T Consensus         1 ~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~l   80 (290)
T cd05045           1 NLVLGKTLGEGEFGKVVKATAFRLKGRAGYTTVAVKMLKENASSSELRDLLSEFNLLKQVNHPHVIKLYGACSQDGPLLL   80 (290)
T ss_pred             CccccccccCcCCcceEEEEEecCCCCCcceeEEEEecCCCCCHHHHHHHHHHHHHHhhCCCCCEeeEEEEEecCCCcEE
Confidence            3677889999999999999852      23568888776443 3445778999999999999999999999999999999


Q ss_pred             EEecCCCCCCCH----------------------------------HHHHHHHHHHH-------------hccCCCcEEE
Q 047066          178 VNEFVKLPTISW----------------------------------EVRIRIAAETA-------------EDIKSINILL  210 (256)
Q Consensus       178 v~e~~~~~~l~~----------------------------------~~~~~~~~~i~-------------rdlk~~NiLi  210 (256)
                      ++||+.+++|..                                  ...+.++.+++             +||||+|||+
T Consensus        81 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~ivH~dikp~nill  160 (290)
T cd05045          81 IVEYAKYGSLRSFLRESRKVGPSYLGSDGNRNSSYLDNPDERALTMGDLISFAWQISRGMQYLAEMKLVHRDLAARNVLV  160 (290)
T ss_pred             EEEecCCCCHHHHHHhcCCccccccccccccccccccCccccccCHHHHHHHHHHHHHHHHHHHHCCeehhhhhhheEEE
Confidence            999999876642                                  22234444443             7999999999


Q ss_pred             cCCCcEEEEecCCceecCCCCcee-eeeeeecccc----cccccCCCCCCC
Q 047066          211 DDNYTTKVCDFGASKLVPIDETQL-STMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       211 ~~~~~~ki~DFGla~~~~~~~~~~-~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      ++++.+||+|||+++......... .....++..|    +..+..++.++|
T Consensus       161 ~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~apE~~~~~~~~~~~D  211 (290)
T cd05045         161 AEGRKMKISDFGLSRDVYEEDSYVKRSKGRIPVKWMAIESLFDHIYTTQSD  211 (290)
T ss_pred             cCCCcEEeccccccccccCccchhcccCCCCCccccCHHHHccCCcchHhH
Confidence            999999999999998754332211 1222345556    344555666665

Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leadi

>cd05112 PTKc_Itk Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase

Probab=99.80  E-value=9.1e-19  Score=144.09  Aligned_cols=152  Identities=26%  Similarity=0.380  Sum_probs=114.6

Q ss_pred             CCCcccceeeeeCceEEEEEEECCCcEEEEEEecccChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEecCC
Q 047066          104 NNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEFVK  183 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~  183 (256)
                      ..|++.+.||+|+||.||++.+.++..+++|.+..... ...++.+|+++++.++|||++++++++......++++||++
T Consensus         4 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~~~k~~~~~~~-~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~~   82 (256)
T cd05112           4 SELTLVQEIGSGQFGLVWLGYWLEKRKVAIKTIREGAM-SEEDFIEEAQVMMKLSHPKLVQLYGVCTERSPICLVFEFME   82 (256)
T ss_pred             hHeEEEeeecCcccceEEEEEEeCCCeEEEEECCCCCC-CHHHHHHHHHHHHhCCCCCeeeEEEEEccCCceEEEEEcCC
Confidence            46788899999999999999887778899998764332 23568899999999999999999999999899999999998


Q ss_pred             CCCC-----------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceeeeeee
Q 047066          184 LPTI-----------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQ  239 (256)
Q Consensus       184 ~~~l-----------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~~~~  239 (256)
                      +++|           ++.....++.+++             +||+|+||+++.++.+||+|||+++....+.........
T Consensus        83 ~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~i~h~dl~p~ni~i~~~~~~~l~d~g~~~~~~~~~~~~~~~~~  162 (256)
T cd05112          83 HGCLSDYLRAQRGKFSQETLLGMCLDVCEGMAYLESSNVIHRDLAARNCLVGENQVVKVSDFGMTRFVLDDQYTSSTGTK  162 (256)
T ss_pred             CCcHHHHHHhCccCCCHHHHHHHHHHHHHHHHHHHHCCccccccccceEEEcCCCeEEECCCcceeecccCcccccCCCc
Confidence            8654           3333344444433             699999999999999999999999876433222122222


Q ss_pred             ecccc----cccccCCCCCCC
Q 047066          240 GTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       240 Gt~~y----~~~~~~~t~ksD  256 (256)
                      ++.+|    .+.++.++.++|
T Consensus       163 ~~~~~~aPe~~~~~~~~~~~D  183 (256)
T cd05112         163 FPVKWSSPEVFSFSKYSSKSD  183 (256)
T ss_pred             cchhhcCHhHhccCCcChHHH
Confidence            44556    444566666665

Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activ

>cd05084 PTKc_Fes Catalytic domain of the Protein Tyrosine Kinase, Fes

Probab=99.79  E-value=8.7e-19  Score=143.95  Aligned_cols=147  Identities=26%  Similarity=0.398  Sum_probs=108.8

Q ss_pred             ceeeeeCceEEEEEEEC-CCcEEEEEEecccC-hhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEecCCCCCC
Q 047066          110 RMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY-QSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEFVKLPTI  187 (256)
Q Consensus       110 ~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~~~~l  187 (256)
                      +.||+|+||.||+|..+ +++.+|+|...... ......+.+|+++++.++||||+++++++...+..+++|||+++++|
T Consensus         1 ~~lg~g~~g~vy~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L   80 (252)
T cd05084           1 ERIGRGNFGEVFSGRLRADNTPVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQPIYIVMELVQGGDF   80 (252)
T ss_pred             CccCcccCccEEEEEEecCCceEEEEecCccCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEcCCCCeEEEEeeccCCcH
Confidence            36899999999999865 68899999875433 44456799999999999999999999999999999999999987654


Q ss_pred             -----------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceee-eeeeecc
Q 047066          188 -----------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLS-TMVQGTL  242 (256)
Q Consensus       188 -----------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~-~~~~Gt~  242 (256)
                                 ++.....++.|++             +||+|+||+++.++.+||+|||++........... ....++.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~qi~~~L~~lH~~~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~  160 (252)
T cd05084          81 LTFLRTEGPRLKVKELIQMVENAAAGMEYLESKHCIHRDLAARNCLVTEKNVLKISDFGMSREEEDGVYASTGGMKQIPV  160 (252)
T ss_pred             HHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhCCccccccchheEEEcCCCcEEECccccCcccccccccccCCCCCCce
Confidence                       3444444444433             69999999999999999999999986543211111 0111233


Q ss_pred             cc----cccccCCCCCCC
Q 047066          243 GY----YLHTSQGTLNKE  256 (256)
Q Consensus       243 ~y----~~~~~~~t~ksD  256 (256)
                      .|    .+.++.++.++|
T Consensus       161 ~y~aPE~~~~~~~~~~~D  178 (252)
T cd05084         161 KWTAPEALNYGRYSSESD  178 (252)
T ss_pred             eecCchhhcCCCCChHHH
Confidence            45    445556666665

Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular

>cd07833 STKc_CDKL Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

Probab=99.79  E-value=1e-18  Score=146.10  Aligned_cols=152  Identities=24%  Similarity=0.284  Sum_probs=118.1

Q ss_pred             CCcccceeeeeCceEEEEEEEC-CCcEEEEEEeccc--ChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEec
Q 047066          105 NYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIV--YQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEF  181 (256)
Q Consensus       105 ~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~  181 (256)
                      +|++.+.||+|++|.||+|..+ +++.|++|.++..  .......+.+|+++++.++|+||+++.+.+...+..++++||
T Consensus         2 ~y~~~~~i~~g~~~~v~~~~~~~~~~~v~vK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~iv~e~   81 (288)
T cd07833           2 KYEVLGVVGEGAYGVVLKCRNKATGEIVAIKKFKESEDDEDVKKTALREVKVLRQLRHENIVNLKEAFRRKGRLYLVFEY   81 (288)
T ss_pred             ceeEEEEecccCCeeEEEEEeCCCCcEEEEehhhhhcccccchhHHHHHHHHHHhcCCCCeeehhheEEECCEEEEEEec
Confidence            6888899999999999999975 5789999987543  233446789999999999999999999999999999999999


Q ss_pred             CCCCCC----------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceeeeee
Q 047066          182 VKLPTI----------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMV  238 (256)
Q Consensus       182 ~~~~~l----------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~~~  238 (256)
                      ++++.+          +......++.+++             +||+|+||++++++.+||+|||++..............
T Consensus        82 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~i~H~dl~~~ni~~~~~~~~kl~d~g~~~~~~~~~~~~~~~~  161 (288)
T cd07833          82 VERTLLELLEASPGGLPPDAVRSYIWQLLQAIAYCHSHNIIHRDIKPENILVSESGVLKLCDFGFARALRARPASPLTDY  161 (288)
T ss_pred             CCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeEECCCCCEEEEeeecccccCCCccccccCc
Confidence            987543          3444444555444             69999999999999999999999987754433222334


Q ss_pred             eecccc----ccccc-CCCCCCC
Q 047066          239 QGTLGY----YLHTS-QGTLNKE  256 (256)
Q Consensus       239 ~Gt~~y----~~~~~-~~t~ksD  256 (256)
                      .|+..|    ++.+. .++.++|
T Consensus       162 ~~~~~~~~PE~~~~~~~~~~~~D  184 (288)
T cd07833         162 VATRWYRAPELLVGDTNYGKPVD  184 (288)
T ss_pred             ccccCCcCCchhcCCCCcCchhh
Confidence            567777    33344 6677776

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning

>cd05088 PTKc_Tie2 Catalytic domain of the Protein Tyrosine Kinase, Tie2

Probab=99.79  E-value=9.6e-19  Score=147.94  Aligned_cols=151  Identities=27%  Similarity=0.434  Sum_probs=110.9

Q ss_pred             CCCcccceeeeeCceEEEEEEEC-CCc--EEEEEEeccc-ChhHHHHHHHHHHHHHhC-CCCcccceeeEEEECCEEEEE
Q 047066          104 NNYAYDRMIGRGGYGTVFLGSLS-DNK--AIAIKKSRIV-YQSQIEQCINKVVVLSQI-NHRNVVGLLGCCLETEVPLLV  178 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~V~~~~~~-~~~--~vavK~~~~~-~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~lv  178 (256)
                      ++|++.+.||+|+||.||+|.++ ++.  .+++|..... .......+.+|++++.++ +||||+++++++...+..+++
T Consensus         7 ~~~~~~~~lg~G~~g~V~~a~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~Ei~~l~~l~~h~~iv~~~~~~~~~~~~~lv   86 (303)
T cd05088           7 NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLA   86 (303)
T ss_pred             hhceeeeeecCCCCceEEEEEEccCCceeeEEEEEecccCCHHHHHHHHHHHHHHHHhcCCCCcceEEEEECCCCCceEE
Confidence            57888899999999999999864 444  4577766543 234456788999999999 899999999999999999999


Q ss_pred             EecCCCCCC--------------------------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEE
Q 047066          179 NEFVKLPTI--------------------------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVC  219 (256)
Q Consensus       179 ~e~~~~~~l--------------------------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~  219 (256)
                      +||+++++|                          ++...+.++.|++             +||||+|||+++++.+||+
T Consensus        87 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH~~gi~H~dlkp~Nili~~~~~~kl~  166 (303)
T cd05088          87 IEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQKQFIHRDLAARNILVGENYVAKIA  166 (303)
T ss_pred             EEeCCCCcHHHHHHhcccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHHhCCccccccchheEEecCCCcEEeC
Confidence            999987654                          3334445555544             6999999999999999999


Q ss_pred             ecCCceecCCCCceeeeeeeecccc----cccccCCCCCCC
Q 047066          220 DFGASKLVPIDETQLSTMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       220 DFGla~~~~~~~~~~~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      |||+++.......  .....+++.|    +..+..++.++|
T Consensus       167 dfg~~~~~~~~~~--~~~~~~~~~y~aPE~~~~~~~~~~~D  205 (303)
T cd05088         167 DFGLSRGQEVYVK--KTMGRLPVRWMAIESLNYSVYTTNSD  205 (303)
T ss_pred             ccccCcccchhhh--cccCCCcccccCHHHHhccCCccccc
Confidence            9999874321111  1111234445    344555677776

Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of A

>cd05065 PTKc_EphR_B Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors

Probab=99.79  E-value=9.2e-19  Score=145.26  Aligned_cols=126  Identities=24%  Similarity=0.403  Sum_probs=103.7

Q ss_pred             CCCcccceeeeeCceEEEEEEEC-CC---cEEEEEEeccc-ChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEE
Q 047066          104 NNYAYDRMIGRGGYGTVFLGSLS-DN---KAIAIKKSRIV-YQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLV  178 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~V~~~~~~-~~---~~vavK~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv  178 (256)
                      .+|++.+.||+|+||.||+|..+ ++   ..|++|.+... .......+..|+.+++.++||||+++.+++...+..+++
T Consensus         4 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~lv   83 (269)
T cd05065           4 SCVKIEEVIGAGEFGEVCRGRLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIMGQFDHPNIIHLEGVVTKSRPVMII   83 (269)
T ss_pred             HHeEEEeEecCCCCCeEEEEEEecCCCCceeEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCcCcceEEEEECCCCceEEE
Confidence            45788899999999999999864 23   36999987654 344567899999999999999999999999999999999


Q ss_pred             EecCCCCCC-----------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCC
Q 047066          179 NEFVKLPTI-----------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPI  229 (256)
Q Consensus       179 ~e~~~~~~l-----------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~  229 (256)
                      |||+++++|           ++.....++.+++             +||+|+||+++.++.+||+|||+++....
T Consensus        84 ~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~l~~al~~lH~~g~~H~dl~p~nili~~~~~~kl~dfg~~~~~~~  158 (269)
T cd05065          84 TEFMENGALDSFLRQNDGQFTVIQLVGMLRGIAAGMKYLSEMNYVHRDLAARNILVNSNLVCKVSDFGLSRFLED  158 (269)
T ss_pred             EecCCCCcHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHCCEeecccChheEEEcCCCcEEECCCcccccccc
Confidence            999988665           3344455555544             59999999999999999999999986643

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephr

>cd05100 PTKc_FGFR3 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3

Probab=99.79  E-value=8.2e-19  Score=150.33  Aligned_cols=160  Identities=17%  Similarity=0.296  Sum_probs=118.1

Q ss_pred             HHHHhhcCCCcccceeeeeCceEEEEEEEC--------CCcEEEEEEecccC-hhHHHHHHHHHHHHHhC-CCCccccee
Q 047066           97 GELKIATNNYAYDRMIGRGGYGTVFLGSLS--------DNKAIAIKKSRIVY-QSQIEQCINKVVVLSQI-NHRNVVGLL  166 (256)
Q Consensus        97 ~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~--------~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l-~h~niv~l~  166 (256)
                      .+|++...+|++.+.||+|+||.||++...        ....+|+|...... ....+.+.+|+.+++++ +||||++++
T Consensus         5 ~~~~~~~~~~~i~~~ig~G~~g~v~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~   84 (334)
T cd05100           5 PKWELSRTRLTLGKPLGEGCFGQVVMAEAIGIDKDKPNKPVTVAVKMLKDDATDKDLSDLVSEMEMMKMIGKHKNIINLL   84 (334)
T ss_pred             cccccCHhHeeecceeccccCCcEEEEEEeccCCccCCcceeEEEEEcccccCHHHHHHHHHHHHHHHhhcCCCCeeeee
Confidence            356666778999999999999999999742        12368999876433 34457889999999999 899999999


Q ss_pred             eEEEECCEEEEEEecCCCCCCCH--------------------------HHHHHHHHHHH-------------hccCCCc
Q 047066          167 GCCLETEVPLLVNEFVKLPTISW--------------------------EVRIRIAAETA-------------EDIKSIN  207 (256)
Q Consensus       167 ~~~~~~~~~~lv~e~~~~~~l~~--------------------------~~~~~~~~~i~-------------rdlk~~N  207 (256)
                      +++...+..++++||+.+++|..                          ...+.++.|++             +||||+|
T Consensus        85 ~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH~~givH~dlkp~N  164 (334)
T cd05100          85 GACTQDGPLYVLVEYASKGNLREYLRARRPPGMDYSFDTCKLPEEQLTFKDLVSCAYQVARGMEYLASQKCIHRDLAARN  164 (334)
T ss_pred             EEEccCCceEEEEecCCCCcHHHHHHhcCCcccccccccccCccccCCHHHHHHHHHHHHHHHHHHHHCCeeccccccce
Confidence            99999999999999998876532                          22333444444             6999999


Q ss_pred             EEEcCCCcEEEEecCCceecCCCCcee-eeeeeecccc----cccccCCCCCCC
Q 047066          208 ILLDDNYTTKVCDFGASKLVPIDETQL-STMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       208 iLi~~~~~~ki~DFGla~~~~~~~~~~-~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      ||+++++.+||+|||+++......... .....++..|    .+.+..++.++|
T Consensus       165 ill~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~D  218 (334)
T cd05100         165 VLVTEDNVMKIADFGLARDVHNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSD  218 (334)
T ss_pred             EEEcCCCcEEECCcccceecccccccccccCCCcCceEcCHHHhccCCcCchhh
Confidence            999999999999999998764322211 1112234456    444556677666

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd06658 STKc_PAK5 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5

Probab=99.79  E-value=6.9e-19  Score=148.10  Aligned_cols=151  Identities=25%  Similarity=0.282  Sum_probs=118.0

Q ss_pred             CCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEecCC
Q 047066          105 NYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEFVK  183 (256)
Q Consensus       105 ~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~  183 (256)
                      .|.....||+|+||.||++... ++..+++|.+........+.+.+|+..++.++|||++++++.+...+..+++|||++
T Consensus        23 ~~~~~~~lg~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~ii~~~~~~~~~~~~~lv~e~~~  102 (292)
T cd06658          23 YLDSFIKIGEGSTGIVCIATEKHTGKQVAVKKMDLRKQQRRELLFNEVVIMRDYHHENVVDMYNSYLVGDELWVVMEFLE  102 (292)
T ss_pred             HHhhhhcccCCCCeEEEEEEECCCCCEEEEEEEecchHHHHHHHHHHHHHHHhCCCCcHHHHHHheecCCeEEEEEeCCC
Confidence            3444567999999999999864 688999998866555556778999999999999999999999999999999999999


Q ss_pred             CCCC---------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceeeeeeeec
Q 047066          184 LPTI---------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGT  241 (256)
Q Consensus       184 ~~~l---------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~~~~Gt  241 (256)
                      +++|         ++.....++.+++             +||+|+||++++++.+||+|||++......... .....|+
T Consensus       103 ~~~L~~~~~~~~l~~~~~~~~~~qi~~~l~~LH~~~ivH~dlkp~Nill~~~~~~kL~dfg~~~~~~~~~~~-~~~~~~~  181 (292)
T cd06658         103 GGALTDIVTHTRMNEEQIATVCLSVLRALSYLHNQGVIHRDIKSDSILLTSDGRIKLSDFGFCAQVSKEVPK-RKSLVGT  181 (292)
T ss_pred             CCcHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCEeecCCCHHHEEEcCCCCEEEccCcchhhccccccc-CceeecC
Confidence            8765         3344445554444             699999999999999999999999765433221 2334588


Q ss_pred             ccc----cccccCCCCCCC
Q 047066          242 LGY----YLHTSQGTLNKE  256 (256)
Q Consensus       242 ~~y----~~~~~~~t~ksD  256 (256)
                      +.|    ......++.++|
T Consensus       182 ~~y~aPE~~~~~~~~~~~D  200 (292)
T cd06658         182 PYWMAPEVISRLPYGTEVD  200 (292)
T ss_pred             ccccCHHHHccCCCCchhh
Confidence            888    445556777776

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly express

>cd07832 STKc_CCRK Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

Probab=99.79  E-value=1.3e-18  Score=145.38  Aligned_cols=151  Identities=23%  Similarity=0.268  Sum_probs=116.6

Q ss_pred             CCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC--hhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEec
Q 047066          105 NYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY--QSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEF  181 (256)
Q Consensus       105 ~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~  181 (256)
                      +|++.+.||+|++|.||+|... ++..+++|.+....  ......+.+|+.+++.++|||++++++++...+..++++||
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~~v~e~   80 (286)
T cd07832           1 RYKILGRIGEGAHGIVFKAKDRETGETVALKKVALRRLEGGIPNQALREIKALQACQHPYVVKLLDVFPHGSGFVLVMEY   80 (286)
T ss_pred             CceEEeecccCCCcEEEEEEECCCCceEEEEEEEcccccchhhHHHHHHHHHHHhCCCCCCcceeeEEecCCeeEEEecc
Confidence            4788899999999999999975 68899999876543  33446789999999999999999999999999999999999


Q ss_pred             CCCCCC-----------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceeeee
Q 047066          182 VKLPTI-----------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTM  237 (256)
Q Consensus       182 ~~~~~l-----------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~~  237 (256)
                      + +++|           ++.....++.+++             +||+|+||+++.++.++|+|||++.............
T Consensus        81 ~-~~~L~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~ni~~~~~~~~~l~dfg~~~~~~~~~~~~~~~  159 (286)
T cd07832          81 M-PSDLSEVLRDEERPLPEAQVKSYMRMLLKGVAYMHANGIMHRDLKPANLLISADGVLKIADFGLARLFSEEEPRLYSH  159 (286)
T ss_pred             c-CCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCcCHHHEEEcCCCcEEEeeeeecccccCCCCCcccc
Confidence            9 6554           4444455555554             5999999999999999999999998775443222223


Q ss_pred             eeecccc----cc-cccCCCCCCC
Q 047066          238 VQGTLGY----YL-HTSQGTLNKE  256 (256)
Q Consensus       238 ~~Gt~~y----~~-~~~~~t~ksD  256 (256)
                      ..|+..|    .+ ....++.++|
T Consensus       160 ~~~~~~y~aPE~~~~~~~~~~~~D  183 (286)
T cd07832         160 QVATRWYRAPELLYGARKYDPGVD  183 (286)
T ss_pred             ccCcccccCceeeeccccCCchhH
Confidence            4577777    22 2334566665

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of hea

>cd05609 STKc_MAST Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine kinase

Probab=99.79  E-value=2.1e-18  Score=145.95  Aligned_cols=123  Identities=25%  Similarity=0.325  Sum_probs=101.4

Q ss_pred             CCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC---hhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEE
Q 047066          104 NNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY---QSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVN  179 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~  179 (256)
                      ++|++.+.||+|+||.||++... .++.|++|.+....   ......+.+|+++++.++||||+++++.+..++..+++|
T Consensus         1 ~~y~~~~~l~~g~~~~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~   80 (305)
T cd05609           1 EDFETIKLISNGAYGAVYLVRHKETRQRFAMKKINKQNLILRNQIQQVFVERDILTFAENPFVVSMFCSFETKRHLCMVM   80 (305)
T ss_pred             CCceEeeEeecCCCeeEEEEEECCCCcEEEEEEeehhhhhhHHHHHHHHHHHHHHHhCCCCCeeeeEEEEecCCEEEEEE
Confidence            36888899999999999999975 57899999876443   233467889999999999999999999999999999999


Q ss_pred             ecCCCCCC----------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCcee
Q 047066          180 EFVKLPTI----------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKL  226 (256)
Q Consensus       180 e~~~~~~l----------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~  226 (256)
                      ||+++++|          ++.....++.+++             +||+|+||+++.++.+||+|||+++.
T Consensus        81 e~~~g~~L~~~l~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~NIll~~~~~~~l~dfg~~~~  150 (305)
T cd05609          81 EYVEGGDCATLLKNIGALPVDMARMYFAETVLALEYLHNYGIVHRDLKPDNLLITSMGHIKLTDFGLSKI  150 (305)
T ss_pred             ecCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCchHHEEECCCCCEEEeeCCCccc
Confidence            99998765          3333344444333             69999999999999999999999874

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that a

>cd06632 STKc_MEKK1_plant Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

Probab=99.79  E-value=2.5e-18  Score=141.39  Aligned_cols=150  Identities=25%  Similarity=0.347  Sum_probs=114.9

Q ss_pred             CCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC-----hhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEE
Q 047066          105 NYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY-----QSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLV  178 (256)
Q Consensus       105 ~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~-----~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv  178 (256)
                      +|+..+.||+|++|.||+|..+ ++..+++|.+....     +...+.+.+|+.+++.++|+|++++++++...+..+++
T Consensus         1 ~~~~~~~ig~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv   80 (258)
T cd06632           1 RWRKGELLGSGSFGSVYEGLNLDDGDFFAVKEVSLADDGQTGQEAVKQLEQEIALLSKLQHPNIVQYLGTEREEDNLYIF   80 (258)
T ss_pred             CccccceeeecCCceEEEEEEcCCCcEEEEEEEEEccccccchHHHHHHHHHHHHHHhcCCCCchheeeeEecCCeEEEE
Confidence            3667789999999999999976 78899999875432     33456789999999999999999999999999999999


Q ss_pred             EecCCCCCC----------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceee
Q 047066          179 NEFVKLPTI----------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLS  235 (256)
Q Consensus       179 ~e~~~~~~l----------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~  235 (256)
                      +||+++++|          ++.....++.+++             +||+|+||+++.++.+||+|||++.......  ..
T Consensus        81 ~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~~~ni~~~~~~~~kl~d~~~~~~~~~~~--~~  158 (258)
T cd06632          81 LELVPGGSLAKLLKKYGSFPEPVIRLYTRQILLGLEYLHDRNTVHRDIKGANILVDTNGVVKLADFGMAKQVVEFS--FA  158 (258)
T ss_pred             EEecCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCCEEEccCccceeccccc--cc
Confidence            999988654          4444444454444             5999999999999999999999998764432  12


Q ss_pred             eeeeecccc----cccccC-CCCCCC
Q 047066          236 TMVQGTLGY----YLHTSQ-GTLNKE  256 (256)
Q Consensus       236 ~~~~Gt~~y----~~~~~~-~t~ksD  256 (256)
                      ....|++.|    ...... ++.++|
T Consensus       159 ~~~~~~~~y~~pe~~~~~~~~~~~~D  184 (258)
T cd06632         159 KSFKGSPYWMAPEVIAQQGGYGLAAD  184 (258)
T ss_pred             cccCCCcceeCHHHhcCCCCCCchhh
Confidence            234477777    233333 566665

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidops

>smart00219 TyrKc Tyrosine kinase, catalytic domain

Probab=99.79  E-value=2.4e-18  Score=141.39  Aligned_cols=150  Identities=25%  Similarity=0.411  Sum_probs=115.7

Q ss_pred             cccceeeeeCceEEEEEEECC-----CcEEEEEEecccChh-HHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEe
Q 047066          107 AYDRMIGRGGYGTVFLGSLSD-----NKAIAIKKSRIVYQS-QIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNE  180 (256)
Q Consensus       107 ~~~~~lg~G~~g~V~~~~~~~-----~~~vavK~~~~~~~~-~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e  180 (256)
                      ++.+.||.|+||.||++...+     +..+|+|.+...... ....+..|+..+..++|+||+++++.+...+..+++||
T Consensus         2 ~~~~~lg~g~~g~v~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~i~e   81 (258)
T smart00219        2 TLGKKLGEGAFGEVYKGTLKGLSGEKEVEVAVKTLKEDADEQQIEEFLREARIMRKLDHPNIVKLLGVCTEEEPLMIVME   81 (258)
T ss_pred             cccceeccCCCcceEEEEecCCCCCCCceEEEEEccCCCChHHHHHHHHHHHHHHhcCCCchheEEEEEcCCCeeEEEEe
Confidence            466889999999999998753     378999988655432 56789999999999999999999999999999999999


Q ss_pred             cCCCCCC------------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceee
Q 047066          181 FVKLPTI------------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLS  235 (256)
Q Consensus       181 ~~~~~~l------------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~  235 (256)
                      |+++++|            ++.....++.+++             +||+|+||++++++.++|+|||+++..........
T Consensus        82 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ql~~~l~~lh~~~~~h~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~  161 (258)
T smart00219       82 YMEGGDLLDYLRKNRPKELSLSDLLSFALQIARGMEYLESKNFIHRDLAARNCLVGENLVVKISDFGLSRDLYDDDYYKK  161 (258)
T ss_pred             ccCCCCHHHHHHhhhhccCCHHHHHHHHHHHHHHHHHHhcCCeeecccccceEEEccCCeEEEcccCCceeccccccccc
Confidence            9988664            3333444444443             69999999999999999999999987765433222


Q ss_pred             eeeeecccc----cccccCCCCCCC
Q 047066          236 TMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       236 ~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      ....+++.|    ...+..++.++|
T Consensus       162 ~~~~~~~~y~~Pe~~~~~~~~~~~D  186 (258)
T smart00219      162 KGGKLPIRWMAPESLKDGKFTSKSD  186 (258)
T ss_pred             ccCCCcccccChHHhccCCCCcchh
Confidence            222356667    445566777776

Phosphotransferases. Tyrosine-specific kinase subfamily.

>cd06628 STKc_MAPKKK_Byr2_like Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases

Probab=99.79  E-value=1.8e-18  Score=143.16  Aligned_cols=152  Identities=23%  Similarity=0.404  Sum_probs=114.9

Q ss_pred             CCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccCh---------hHHHHHHHHHHHHHhCCCCcccceeeEEEECCE
Q 047066          105 NYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVYQ---------SQIEQCINKVVVLSQINHRNVVGLLGCCLETEV  174 (256)
Q Consensus       105 ~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~---------~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~  174 (256)
                      +|.+.+.||+|++|.||+|... ++..+++|.+.....         ...+.+.+|+.++++++||||+++++++...+.
T Consensus         1 ~~~~~~~ig~g~~~~v~~a~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~   80 (267)
T cd06628           1 KWIKGALIGSGSFGSVYLGMNASSGELMAVKQVELPSVSASSKDRKRSMLDALAREIALLKELQHENIVQYLGSSLDADH   80 (267)
T ss_pred             CccccceeecCCCeEEEEEEecCCCcEEEEEEecCCCcccchhHHHHHHHHHHHHHHHHHHhcCCCCeeeEEEEEEeCCc
Confidence            3567789999999999999864 578999997754321         123568889999999999999999999999999


Q ss_pred             EEEEEecCCCCCC----------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCC
Q 047066          175 PLLVNEFVKLPTI----------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDE  231 (256)
Q Consensus       175 ~~lv~e~~~~~~l----------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~  231 (256)
                      .++++||+++++|          +......++.+++             +||+|+||++++++.+||+|||+++.+..+.
T Consensus        81 ~~lv~e~~~~~~L~~~l~~~~~l~~~~~~~~~~~l~~~l~~lH~~~ivH~di~p~nil~~~~~~~~l~dfg~~~~~~~~~  160 (267)
T cd06628          81 LNIFLEYVPGGSVAALLNNYGAFEETLVRNFVRQILKGLNYLHNRGIIHRDIKGANILVDNKGGIKISDFGISKKLEANS  160 (267)
T ss_pred             cEEEEEecCCCCHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhcCcccccCCHHHEEEcCCCCEEecccCCCccccccc
Confidence            9999999988654          3344444444444             6999999999999999999999998775321


Q ss_pred             ce-----eeeeeeecccc----cccccCCCCCCC
Q 047066          232 TQ-----LSTMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       232 ~~-----~~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      ..     ......|++.|    .+.++.++.++|
T Consensus       161 ~~~~~~~~~~~~~~~~~y~~pe~~~~~~~~~~~D  194 (267)
T cd06628         161 LSTKTNGARPSLQGSVFWMAPEVVKQTSYTRKAD  194 (267)
T ss_pred             ccCCccccccccCCCcCccChhHhccCCCCchhh
Confidence            11     11123477777    445566777776

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate

>KOG0667 consensus Dual-specificity tyrosine-phosphorylation regulated kinase [General function prediction only]

Probab=99.79  E-value=6.5e-19  Score=155.31  Aligned_cols=149  Identities=22%  Similarity=0.236  Sum_probs=116.1

Q ss_pred             cCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccChhHHHHHHHHHHHHHhCC-C-----CcccceeeEEEECCEE
Q 047066          103 TNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVYQSQIEQCINKVVVLSQIN-H-----RNVVGLLGCCLETEVP  175 (256)
Q Consensus       103 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-h-----~niv~l~~~~~~~~~~  175 (256)
                      ..+|.+.++||+|+||+|.+|... +++.||||++++.. ...++...|+.+|..|+ |     -|+|+++++|..+++.
T Consensus       185 ~~rY~V~e~LGkGtFGQVvk~~d~~T~e~VAIKIiKN~k-~f~~Q~~~Ei~iL~~ln~~d~~~~~n~Vrm~d~F~fr~Hl  263 (586)
T KOG0667|consen  185 AYRYEVLEVLGKGSFGQVVKAYDHKTGEIVAIKIIKNKK-RFLRQAQIEIRILELLNKHDPDDKYNIVRMLDYFYFRNHL  263 (586)
T ss_pred             EEEEEEEEEecccccceeEEEEecCCCcEEEEEeeccCh-HHHHHHHHHHHHHHHHhccCCCCCeeEEEeeeccccccce
Confidence            347889999999999999999964 69999999997644 44577889999999986 3     4799999999999999


Q ss_pred             EEEEecCCC-----------CCCCHHHHHHHHHHHH-------------hccCCCcEEEcCCC--cEEEEecCCceecCC
Q 047066          176 LLVNEFVKL-----------PTISWEVRIRIAAETA-------------EDIKSINILLDDNY--TTKVCDFGASKLVPI  229 (256)
Q Consensus       176 ~lv~e~~~~-----------~~l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~--~~ki~DFGla~~~~~  229 (256)
                      +||+|.++.           ..++......++.||.             +||||+|||+.+..  .+||+|||.|.....
T Consensus       264 ciVfELL~~NLYellK~n~f~Glsl~~ir~~~~Qil~~L~~L~~l~IIHcDLKPENILL~~~~r~~vKVIDFGSSc~~~q  343 (586)
T KOG0667|consen  264 CIVFELLSTNLYELLKNNKFRGLSLPLVRKFAQQILTALLFLHELGIIHCDLKPENILLKDPKRSRIKVIDFGSSCFESQ  343 (586)
T ss_pred             eeeehhhhhhHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCeeeccCChhheeeccCCcCceeEEecccccccCC
Confidence            999998843           3356666666665554             69999999997544  799999999998653


Q ss_pred             CCceeeeeeeecccc----cccccCCCCCCC
Q 047066          230 DETQLSTMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       230 ~~~~~~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      .-.    .-.-+..|    .+.+.+|+.+.|
T Consensus       344 ~vy----tYiQSRfYRAPEVILGlpY~~~ID  370 (586)
T KOG0667|consen  344 RVY----TYIQSRFYRAPEVILGLPYDTAID  370 (586)
T ss_pred             cce----eeeeccccccchhhccCCCCCccc
Confidence            322    12244455    777888888766

>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.79  E-value=5.9e-20  Score=154.31  Aligned_cols=156  Identities=24%  Similarity=0.311  Sum_probs=119.7

Q ss_pred             HhhcCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEeccc---ChhHHHHHHHHHHHHHhC-CCCcccceeeEEEECCE
Q 047066          100 KIATNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIV---YQSQIEQCINKVVVLSQI-NHRNVVGLLGCCLETEV  174 (256)
Q Consensus       100 ~~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~  174 (256)
                      .+-..+|..+.+||+|+||+|.++..+ +.+.+|||+++..   ..++.+--+.|-.+|+-. +-|.+++++.++.+.+.
T Consensus       345 ~i~~tDFnFl~VlGKGSFGKVlLaerkgtdELyAiKiLkKDViiQdDDvectm~EKrvLAL~~kppFL~qlHScFQTmDR  424 (683)
T KOG0696|consen  345 RIKATDFNFLMVLGKGSFGKVLLAERKGTDELYAIKILKKDVIIQDDDVECTMVEKRVLALPGKPPFLVQLHSCFQTMDR  424 (683)
T ss_pred             ceeecccceEEEeccCccceeeeecccCcchhhhhhhhccceeeecCcccceehhhhheecCCCCchHHHHHHHhhhhhh
Confidence            445578999999999999999999876 4667899987642   234455667788888877 67899999999999999


Q ss_pred             EEEEEecCCCCCCC----------HHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCC
Q 047066          175 PLLVNEFVKLPTIS----------WEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDE  231 (256)
Q Consensus       175 ~~lv~e~~~~~~l~----------~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~  231 (256)
                      +|+||||+.+|.|-          +.....++..||             ||||..||++|.+|++||+|||+++.--.+.
T Consensus       425 LyFVMEyvnGGDLMyhiQQ~GkFKEp~AvFYAaEiaigLFFLh~kgIiYRDLKLDNvmLd~eGHiKi~DFGmcKEni~~~  504 (683)
T KOG0696|consen  425 LYFVMEYVNGGDLMYHIQQVGKFKEPVAVFYAAEIAIGLFFLHSKGIIYRDLKLDNVMLDSEGHIKIADFGMCKENIFDG  504 (683)
T ss_pred             eeeEEEEecCchhhhHHHHhcccCCchhhhhhHHHHHHhhhhhcCCeeeeeccccceEeccCCceEeeecccccccccCC
Confidence            99999999998873          333444555555             7999999999999999999999998643332


Q ss_pred             ceeeeeeeecccc----cccccCCCCCCC
Q 047066          232 TQLSTMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       232 ~~~~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      . ...+.||||.|    .+....|...+|
T Consensus       505 ~-TTkTFCGTPdYiAPEIi~YqPYgksvD  532 (683)
T KOG0696|consen  505 V-TTKTFCGTPDYIAPEIIAYQPYGKSVD  532 (683)
T ss_pred             c-ceeeecCCCcccccceEEecccccchh
Confidence            2 23467999999    444455554443

>cd06622 PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS2-like dual-specificity MAP kinase kinases

Probab=99.79  E-value=1.3e-18  Score=145.67  Aligned_cols=138  Identities=22%  Similarity=0.358  Sum_probs=108.7

Q ss_pred             CCCcccceeeeeCceEEEEEEEC-CCcEEEEEEeccc-ChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEec
Q 047066          104 NNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIV-YQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEF  181 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~  181 (256)
                      ++|++.+.||+|+||.||++..+ ++..+|+|.+... .......+.+|+.+++.++||||+++++.+...+..+++|||
T Consensus         1 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~   80 (286)
T cd06622           1 DEIEVLDELGKGNYGSVYKVLHRPTGVTMAMKEIRLELDESKFNQIIMELDILHKAVSPYIVDFYGAFFIEGAVYMCMEY   80 (286)
T ss_pred             ChhhhhhhhcccCCeEEEEEEEcCCCcEEEEEEeecccCHHHHHHHHHHHHHHHhcCCCcHHhhhhheecCCeEEEEEee
Confidence            35788899999999999999975 6889999987643 334457789999999999999999999999999999999999


Q ss_pred             CCCCCC-------------CHHHHHHHHHHH--------------HhccCCCcEEEcCCCcEEEEecCCceecCCCCcee
Q 047066          182 VKLPTI-------------SWEVRIRIAAET--------------AEDIKSINILLDDNYTTKVCDFGASKLVPIDETQL  234 (256)
Q Consensus       182 ~~~~~l-------------~~~~~~~~~~~i--------------~rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~  234 (256)
                      +++++|             ++.....++.++              |+||+|+||+++.++.+||+|||++..+.....  
T Consensus        81 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~--  158 (286)
T cd06622          81 MDAGSLDKLYAGGVATEGIPEDVLRRITYAVVKGLKFLKEEHNIIHRDVKPTNVLVNGNGQVKLCDFGVSGNLVASLA--  158 (286)
T ss_pred             cCCCCHHHHHHhccccCCCCHHHHHHHHHHHHHHHHHHHhcCCEeeCCCCHHHEEECCCCCEEEeecCCcccccCCcc--
Confidence            988654             333333333333              369999999999999999999999986643221  


Q ss_pred             eeeeeecccc
Q 047066          235 STMVQGTLGY  244 (256)
Q Consensus       235 ~~~~~Gt~~y  244 (256)
                       ....|++.|
T Consensus       159 -~~~~~~~~y  167 (286)
T cd06622         159 -KTNIGCQSY  167 (286)
T ss_pred             -ccCCCccCc
Confidence             122366666

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal PBS2-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.79  E-value=3.9e-18  Score=165.07  Aligned_cols=143  Identities=21%  Similarity=0.342  Sum_probs=113.0

Q ss_pred             CCCcccceeeeeCceEEEEEEE-CCCcEEEEEEecccChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEecC
Q 047066          104 NNYAYDRMIGRGGYGTVFLGSL-SDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEFV  182 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~  182 (256)
                      ..+...+.||+|+||.||+|.. .++..||+|.+......    ...|+..+++++||||++++++|.+.+..++||||+
T Consensus       690 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~----~~~~~~~l~~l~HpnIv~~~~~~~~~~~~~lv~Ey~  765 (968)
T PLN00113        690 SSLKEENVISRGKKGASYKGKSIKNGMQFVVKEINDVNSI----PSSEIADMGKLQHPNIVKLIGLCRSEKGAYLIHEYI  765 (968)
T ss_pred             hhCCcccEEccCCCeeEEEEEECCCCcEEEEEEccCCccc----cHHHHHHHhhCCCCCcceEEEEEEcCCCCEEEEeCC
Confidence            4567778999999999999997 47899999988643321    134688899999999999999999999999999999


Q ss_pred             CCCCC-------CHHHHHHHHHHHH----------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceeeeeee
Q 047066          183 KLPTI-------SWEVRIRIAAETA----------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQ  239 (256)
Q Consensus       183 ~~~~l-------~~~~~~~~~~~i~----------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~~~~  239 (256)
                      ++|+|       +|..+..++.+++                ||+||+||+++.++..++. ||.+.....+     ....
T Consensus       766 ~~g~L~~~l~~l~~~~~~~i~~~ia~~L~yLH~~~~~~iiH~dlkp~Nil~~~~~~~~~~-~~~~~~~~~~-----~~~~  839 (968)
T PLN00113        766 EGKNLSEVLRNLSWERRRKIAIGIAKALRFLHCRCSPAVVVGNLSPEKIIIDGKDEPHLR-LSLPGLLCTD-----TKCF  839 (968)
T ss_pred             CCCcHHHHHhcCCHHHHHHHHHHHHHHHHHhccCCCCCeecCCCCHHhEEECCCCceEEE-eccccccccC-----CCcc
Confidence            99875       5666777776665                6999999999999888876 6666543222     1224


Q ss_pred             ecccc----cccccCCCCCCC
Q 047066          240 GTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       240 Gt~~y----~~~~~~~t~ksD  256 (256)
                      ||+.|    ++.++.++.|+|
T Consensus       840 ~t~~y~aPE~~~~~~~~~~sD  860 (968)
T PLN00113        840 ISSAYVAPETRETKDITEKSD  860 (968)
T ss_pred             ccccccCcccccCCCCCcccc
Confidence            78888    666778899988

>cd05080 PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=99.79  E-value=1.8e-18  Score=144.58  Aligned_cols=151  Identities=23%  Similarity=0.374  Sum_probs=111.9

Q ss_pred             CcccceeeeeCceEEEEEEE-----CCCcEEEEEEecccC-hhHHHHHHHHHHHHHhCCCCcccceeeEEEE--CCEEEE
Q 047066          106 YAYDRMIGRGGYGTVFLGSL-----SDNKAIAIKKSRIVY-QSQIEQCINKVVVLSQINHRNVVGLLGCCLE--TEVPLL  177 (256)
Q Consensus       106 ~~~~~~lg~G~~g~V~~~~~-----~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~--~~~~~l  177 (256)
                      |+..+.||+|+||+||++..     .++..+|+|.+.... ......+.+|++++++++||||+++++++..  ....++
T Consensus         6 ~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~l   85 (283)
T cd05080           6 LKKIRVLGEGHFGKVSLYCYDPANDGTGEMVAVKTLKRECGQQNTSGWKKEINILKTLYHENIVKYKGCCSEQGGKGLQL   85 (283)
T ss_pred             ceeceecccCCCcEEEEeeEccccCCCCceEEEEEeccccChHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCCceEEE
Confidence            47889999999999988653     357789999886543 3345678899999999999999999998875  346899


Q ss_pred             EEecCCCCCC---------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCcee-
Q 047066          178 VNEFVKLPTI---------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQL-  234 (256)
Q Consensus       178 v~e~~~~~~l---------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~-  234 (256)
                      +|||+++++|         ++.....++.+++             +||||+|||+++++.+||+|||+++......... 
T Consensus        86 v~e~~~~~~l~~~~~~~~l~~~~~~~i~~~l~~~l~~lH~~~i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~~~~~~~~  165 (283)
T cd05080          86 IMEYVPLGSLRDYLPKHKLNLAQLLLFAQQICEGMAYLHSQHYIHRDLAARNVLLDNDRLVKIGDFGLAKAVPEGHEYYR  165 (283)
T ss_pred             EecCCCCCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHCCeeccccChheEEEcCCCcEEEeecccccccCCcchhhc
Confidence            9999988765         4555556666554             6999999999999999999999998765332211 


Q ss_pred             -eeeeeecccc----cccccCCCCCCC
Q 047066          235 -STMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       235 -~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                       .....++..|    ....+.++.++|
T Consensus       166 ~~~~~~~~~~~~~PE~~~~~~~~~~~D  192 (283)
T cd05080         166 VREDGDSPVFWYAVECLKENKFSYASD  192 (283)
T ss_pred             cCCCCCCCceeeCHhHhcccCCCcccc
Confidence             1111233344    344566777776

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of sign

>cd05063 PTKc_EphR_A2 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2

Probab=99.79  E-value=1.2e-18  Score=144.36  Aligned_cols=154  Identities=23%  Similarity=0.375  Sum_probs=115.4

Q ss_pred             cCCCcccceeeeeCceEEEEEEEC-CC---cEEEEEEecccC-hhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEE
Q 047066          103 TNNYAYDRMIGRGGYGTVFLGSLS-DN---KAIAIKKSRIVY-QSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLL  177 (256)
Q Consensus       103 ~~~~~~~~~lg~G~~g~V~~~~~~-~~---~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~l  177 (256)
                      .++|+..+.||+|+||.||+|..+ ++   ..+++|.+.... ....+.+..|+.+++.++|||++++.+++...+..++
T Consensus         4 ~~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l   83 (268)
T cd05063           4 PSHITKQKVIGAGEFGEVFRGILKMPGRKEVAVAIKTLKPGYTEKQRQDFLSEASIMGQFSHHNIIRLEGVVTKFKPAMI   83 (268)
T ss_pred             hHHceEeeEecCCCCccEEEEEEecCCCCceEEEEEeccccCCHHHHHHHHHHHHHHhcCCCCCeeEEEEEEccCCCcEE
Confidence            356788899999999999999864 33   368999876543 4445778999999999999999999999999999999


Q ss_pred             EEecCCCCCC-----------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCce
Q 047066          178 VNEFVKLPTI-----------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQ  233 (256)
Q Consensus       178 v~e~~~~~~l-----------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~  233 (256)
                      +|||+++++|           ++.....++.+++             +||||+||++++++.+||+|||++.........
T Consensus        84 v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH~~~i~H~dlkp~Nili~~~~~~kl~dfg~~~~~~~~~~~  163 (268)
T cd05063          84 ITEYMENGALDKYLRDHDGEFSSYQLVGMLRGIAAGMKYLSDMNYVHRDLAARNILVNSNLECKVSDFGLSRVLEDDPEG  163 (268)
T ss_pred             EEEcCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCeeccccchhhEEEcCCCcEEECCCccceeccccccc
Confidence            9999988665           3444455555544             699999999999999999999999876433221


Q ss_pred             eeee--eeecccc----cccccCCCCCCC
Q 047066          234 LSTM--VQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       234 ~~~~--~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      ....  ...++.|    +...+.++.++|
T Consensus       164 ~~~~~~~~~~~~y~~PE~~~~~~~~~~~D  192 (268)
T cd05063         164 TYTTSGGKIPIRWTAPEAIAYRKFTSASD  192 (268)
T ss_pred             ceeccCCCcCceecCHHHhhcCCcChHhH
Confidence            1111  1123345    444566677766

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored

>cd07846 STKc_CDKL2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3

Probab=99.79  E-value=8.3e-19  Score=146.65  Aligned_cols=152  Identities=24%  Similarity=0.291  Sum_probs=116.7

Q ss_pred             CCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC--hhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEe
Q 047066          104 NNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY--QSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNE  180 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e  180 (256)
                      ++|+..+.||+|+||.||+|..+ +++.+|+|......  ....+.+.+|+++++.++||||+++++++...+..++++|
T Consensus         1 ~~y~~~~~lg~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   80 (286)
T cd07846           1 EKYENLGLVGEGSYGMVMKCKHKETGQIVAIKKFLESEDDKMVKKIAMREIRMLKQLRHENLVNLIEVFRRKKRLYLVFE   80 (286)
T ss_pred             CceeEeeeeccCCCeEEEEEEECCCCCEEEEEeHhhccCcchhhHHHHHHHHHHHhcCCcchhhHHHhcccCCeEEEEEe
Confidence            36788899999999999999975 58899999765432  2234568899999999999999999999999999999999


Q ss_pred             cCCCCC----------CCHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceeeee
Q 047066          181 FVKLPT----------ISWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTM  237 (256)
Q Consensus       181 ~~~~~~----------l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~~  237 (256)
                      |++++.          +++.....++.+++             +||+|+||++++++.++|+|||++..+...... .+.
T Consensus        81 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~i~h~~l~p~ni~~~~~~~~~l~dfg~~~~~~~~~~~-~~~  159 (286)
T cd07846          81 FVDHTVLDDLEKYPNGLDESRVRKYLFQILRGIEFCHSHNIIHRDIKPENILVSQSGVVKLCDFGFARTLAAPGEV-YTD  159 (286)
T ss_pred             cCCccHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCCHHHEEECCCCcEEEEeeeeeeeccCCccc-cCc
Confidence            998754          45666666666655             599999999999999999999999876443221 222


Q ss_pred             eeecccc----ccc-ccCCCCCCC
Q 047066          238 VQGTLGY----YLH-TSQGTLNKE  256 (256)
Q Consensus       238 ~~Gt~~y----~~~-~~~~t~ksD  256 (256)
                      ..|+..|    +.. ...++.++|
T Consensus       160 ~~~~~~y~aPE~~~~~~~~~~~~D  183 (286)
T cd07846         160 YVATRWYRAPELLVGDTKYGRAVD  183 (286)
T ss_pred             ccceeeccCcHHhccccccCchHh
Confidence            3466666    222 234566665

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKI

>cd06626 STKc_MEKK4 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

Probab=99.79  E-value=2.6e-18  Score=141.88  Aligned_cols=152  Identities=24%  Similarity=0.336  Sum_probs=116.9

Q ss_pred             CCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccCh--hHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEec
Q 047066          105 NYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVYQ--SQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEF  181 (256)
Q Consensus       105 ~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~  181 (256)
                      +|++.+.||+|+||.||++... ++..+++|.++....  ...+.+..|+.+++.++|+||+++++.+...+..++++||
T Consensus         1 ~y~~~~~lg~G~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~lv~e~   80 (264)
T cd06626           1 RWQRGNKIGGGTFGKVYTAVNLDTGELMAVKEIRIQDNDPKTIKEIADEMKVLELLKHPNLVKYYGVEVHREKVYIFMEY   80 (264)
T ss_pred             CceeeeEeecCCCcEEEEEEECCCCcEEEEEEEECcccchHHHHHHHHHHHHHHhCCCCChhheeeeEecCCEEEEEEec
Confidence            4778899999999999999864 688999998765443  3667899999999999999999999999999999999999


Q ss_pred             CCCCCC----------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceeee--
Q 047066          182 VKLPTI----------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLST--  236 (256)
Q Consensus       182 ~~~~~l----------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~--  236 (256)
                      +++++|          ++.....++.+++             +||+|+||++++++.+||+|||++.....+......  
T Consensus        81 ~~~~~L~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~i~H~dl~~~nil~~~~~~~kl~d~g~~~~~~~~~~~~~~~~  160 (264)
T cd06626          81 CSGGTLEELLEHGRILDEHVIRVYTLQLLEGLAYLHSHGIVHRDIKPANIFLDHNGVIKLGDFGCAVKLKNNTTTMGEEV  160 (264)
T ss_pred             CCCCcHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCCEEEcccccccccCCCCCcccccc
Confidence            987654          3344444444444             599999999999999999999999876543322211  


Q ss_pred             -eeeecccc----cccccC---CCCCCC
Q 047066          237 -MVQGTLGY----YLHTSQ---GTLNKE  256 (256)
Q Consensus       237 -~~~Gt~~y----~~~~~~---~t~ksD  256 (256)
                       ...|++.|    ++....   ++.++|
T Consensus       161 ~~~~~~~~~~~PE~~~~~~~~~~~~~~D  188 (264)
T cd06626         161 QSLAGTPAYMAPEVITGGKGKGHGRAAD  188 (264)
T ss_pred             cCCcCCcCccChhhccCCCCCCCCcccc
Confidence             23466677    333333   566665

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4

>cd06640 STKc_MST4 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4

Probab=99.79  E-value=2.4e-18  Score=143.46  Aligned_cols=152  Identities=22%  Similarity=0.291  Sum_probs=118.2

Q ss_pred             CCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC-hhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEec
Q 047066          104 NNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY-QSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEF  181 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~  181 (256)
                      ..|+..+.||+|+||.||+|... ++..+|+|.+.... ......+.+|+.+++.++|||++++++.+.+.+..+++|||
T Consensus         4 ~~y~~~~~lg~g~~~~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   83 (277)
T cd06640           4 ELFTKLERIGKGSFGEVFKGIDNRTQQVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLKGTKLWIIMEY   83 (277)
T ss_pred             HhhhhhhhcccCCCeEEEEEEEccCCEEEEEEEEeccccHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCEEEEEEec
Confidence            45777789999999999999975 58899999876443 44557789999999999999999999999999999999999


Q ss_pred             CCCCCCC---------HHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceeeeeee
Q 047066          182 VKLPTIS---------WEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQ  239 (256)
Q Consensus       182 ~~~~~l~---------~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~~~~  239 (256)
                      +++++|.         +.....++.+++             +||+|+||+++.++.++|+|||++......... .....
T Consensus        84 ~~~~~L~~~i~~~~l~~~~~~~~~~~l~~~l~~lh~~~ivH~dl~p~Nil~~~~~~~~l~dfg~~~~~~~~~~~-~~~~~  162 (277)
T cd06640          84 LGGGSALDLLRAGPFDEFQIATMLKEILKGLDYLHSEKKIHRDIKAANVLLSEQGDVKLADFGVAGQLTDTQIK-RNTFV  162 (277)
T ss_pred             CCCCcHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCccCcCCChhhEEEcCCCCEEEcccccceeccCCccc-ccccc
Confidence            9987753         333334444433             599999999999999999999999876543221 22334


Q ss_pred             ecccc----cccccCCCCCCC
Q 047066          240 GTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       240 Gt~~y----~~~~~~~t~ksD  256 (256)
                      |+..|    ++.+..++.++|
T Consensus       163 ~~~~y~apE~~~~~~~~~~~D  183 (277)
T cd06640         163 GTPFWMAPEVIQQSAYDSKAD  183 (277)
T ss_pred             CcccccCHhHhccCCCccHHH
Confidence            67777    445566777766

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by inter

>cd07863 STKc_CDK4 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4

Probab=99.79  E-value=1.7e-18  Score=144.92  Aligned_cols=150  Identities=26%  Similarity=0.333  Sum_probs=111.8

Q ss_pred             CCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC--hhHHHHHHHHHHHHHhC---CCCcccceeeEEEE-----CC
Q 047066          105 NYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY--QSQIEQCINKVVVLSQI---NHRNVVGLLGCCLE-----TE  173 (256)
Q Consensus       105 ~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l---~h~niv~l~~~~~~-----~~  173 (256)
                      +|++.+.||+|+||.||+|..+ +++.+|+|.+....  ......+.+|+.+++.+   +||||+++++++..     ..
T Consensus         1 ~y~~~~~lg~g~~g~v~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~ni~~~~~~~~~~~~~~~~   80 (288)
T cd07863           1 QYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVQTNEDGLPLSTVREVALLKRLEAFDHPNIVRLMDVCATSRTDRET   80 (288)
T ss_pred             CceEeeEEeecCCeEEEEEEECCCCcEEEEEEeccCcCCCCCchHHHHHHHHHHHhhhcCCCCeeeeeeeeccccCCCCc
Confidence            4778899999999999999975 68899999876432  22223456777777655   69999999998864     34


Q ss_pred             EEEEEEecCCCC-----------CCCHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCC
Q 047066          174 VPLLVNEFVKLP-----------TISWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPI  229 (256)
Q Consensus       174 ~~~lv~e~~~~~-----------~l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~  229 (256)
                      ..++++||+.+.           .+++.....++.|++             +||||+|||+++++.+||+|||+++....
T Consensus        81 ~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~ivH~dikp~Nili~~~~~~kl~dfg~~~~~~~  160 (288)
T cd07863          81 KVTLVFEHVDQDLRTYLDKVPPPGLPAETIKDLMRQFLRGLDFLHANCIVHRDLKPENILVTSGGQVKLADFGLARIYSC  160 (288)
T ss_pred             eEEEEEcccccCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEECCCCCEEECccCccccccC
Confidence            589999998752           245555555665554             69999999999999999999999987643


Q ss_pred             CCceeeeeeeecccc----cccccCCCCCCC
Q 047066          230 DETQLSTMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       230 ~~~~~~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      ...  .....||+.|    .+.+..++.++|
T Consensus       161 ~~~--~~~~~~~~~y~aPE~~~~~~~~~~~D  189 (288)
T cd07863         161 QMA--LTPVVVTLWYRAPEVLLQSTYATPVD  189 (288)
T ss_pred             ccc--CCCccccccccCchHhhCCCCCCcch
Confidence            221  2234578888    555677888887

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitou

>cd07844 STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like Serine/Threonine Kinases

Probab=99.79  E-value=1.6e-18  Score=145.47  Aligned_cols=125  Identities=22%  Similarity=0.335  Sum_probs=100.9

Q ss_pred             CCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccCh-hHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEec
Q 047066          104 NNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVYQ-SQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEF  181 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~  181 (256)
                      ++|++.+.||+|++|.||+|..+ +++.|++|.+..... .....+.+|+++++.++||||+++++++...+..++||||
T Consensus         5 ~~y~~~~~lg~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   84 (291)
T cd07844           5 ETYKKLDKLGEGSYATVYKGRSKLTGQLVALKEIRLEHEEGAPFTAIREASLLKDLKHANIVTLHDIIHTKKTLTLVFEY   84 (291)
T ss_pred             cceeEEEEEeecCCeEEEEEEEcCCCcEEEEEEEecccccCCchhHHHHHHHHhhCCCcceeeEEEEEecCCeEEEEEec
Confidence            57888999999999999999975 688999998764332 2224567899999999999999999999999999999999


Q ss_pred             CCCC----------CCCHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecC
Q 047066          182 VKLP----------TISWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVP  228 (256)
Q Consensus       182 ~~~~----------~l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~  228 (256)
                      +.+.          .+++.....++.+++             +||+|+||++++++.+||+|||+++...
T Consensus        85 ~~~~L~~~~~~~~~~~~~~~~~~~~~ql~~al~~lH~~~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~  154 (291)
T cd07844          85 LDTDLKQYMDDCGGGLSMHNVRLFLFQLLRGLAYCHQRRVLHRDLKPQNLLISERGELKLADFGLARAKS  154 (291)
T ss_pred             CCCCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhCCeecccCCHHHEEEcCCCCEEECccccccccC
Confidence            9751          223333344444433             6999999999999999999999987653

Serine/Threonine Kinases (STKs), PCTAIRE-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily share sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. The association of PCTAIRE-like proteins with cyclins has not been widely studied, although PFTAIRE-1 has been shown to function as a CDK which is regulated by cyclin D3 as well as the

>cd06637 STKc_TNIK Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase

Probab=99.79  E-value=1.6e-18  Score=143.93  Aligned_cols=141  Identities=26%  Similarity=0.362  Sum_probs=109.3

Q ss_pred             hcCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccChhHHHHHHHHHHHHHhC-CCCcccceeeEEEEC------C
Q 047066          102 ATNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVYQSQIEQCINKVVVLSQI-NHRNVVGLLGCCLET------E  173 (256)
Q Consensus       102 ~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~------~  173 (256)
                      +.+.|+..+.||+|+||.||+|... +++.+|+|....... ....+..|+.++..+ +|||++++.+++...      +
T Consensus         4 ~~~~y~~~~~lg~g~~g~vy~~~~~~~~~~~aik~~~~~~~-~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~~~~   82 (272)
T cd06637           4 PAGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTGD-EEEEIKQEINMLKKYSHHRNIATYYGAFIKKNPPGMDD   82 (272)
T ss_pred             hhhhhhHHHheeecCCeEEEEEEEcCCCcEEEEEEEEcCCc-cHHHHHHHHHHHHHhcCCCCeeeEeeEEeecCCCCCCc
Confidence            4567888899999999999999865 578899998765432 335688899999998 799999999998753      4


Q ss_pred             EEEEEEecCCCCCC------------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecC
Q 047066          174 VPLLVNEFVKLPTI------------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVP  228 (256)
Q Consensus       174 ~~~lv~e~~~~~~l------------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~  228 (256)
                      ..+++|||+.+++|            ++.....++.|++             +||+|+||++++++.+||+|||++....
T Consensus        83 ~~~iv~e~~~~~~L~~~l~~~~~~~l~~~~~~~~~~qi~~~l~~LH~~~ivh~dl~~~nili~~~~~~~l~Dfg~~~~~~  162 (272)
T cd06637          83 QLWLVMEFCGAGSVTDLIKNTKGNTLKEEWIAYICREILRGLSHLHQHKVIHRDIKGQNVLLTENAEVKLVDFGVSAQLD  162 (272)
T ss_pred             EEEEEEEcCCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHCCCccCCCCHHHEEECCCCCEEEccCCCceecc
Confidence            68999999987543            4444455555554             6999999999999999999999998764


Q ss_pred             CCCceeeeeeeecccc
Q 047066          229 IDETQLSTMVQGTLGY  244 (256)
Q Consensus       229 ~~~~~~~~~~~Gt~~y  244 (256)
                      .... ......|++.|
T Consensus       163 ~~~~-~~~~~~g~~~y  177 (272)
T cd06637         163 RTVG-RRNTFIGTPYW  177 (272)
T ss_pred             cccc-cCCcccccccc
Confidence            3222 12334588888

Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activ

>cd08218 STKc_Nek1 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 1

Probab=99.79  E-value=2.5e-18  Score=141.43  Aligned_cols=151  Identities=24%  Similarity=0.303  Sum_probs=118.3

Q ss_pred             CCcccceeeeeCceEEEEEEEC-CCcEEEEEEeccc--ChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEec
Q 047066          105 NYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIV--YQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEF  181 (256)
Q Consensus       105 ~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~  181 (256)
                      +|++.+.||+|+||.+|++... +++.+++|.+...  ......++.+|+.++++++||||+++.+++...+..++++||
T Consensus         1 ~y~~~~~lg~g~~g~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~   80 (256)
T cd08218           1 KYVKVKKIGEGSFGKAILVKSKEDGKQYVIKEINISKMSPKEREESRKEVAVLSNMKHPNIVQYQESFEENGNLYIVMDY   80 (256)
T ss_pred             CceEEEEeccCCceEEEEEEEcCCCCEEEEEEEEhHhCChHHHHHHHHHHHHHHhCCCCCeeeeEeeecCCCeEEEEEec
Confidence            4778899999999999999864 6889999987543  234446789999999999999999999999999999999999


Q ss_pred             CCCCCC------------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceeee
Q 047066          182 VKLPTI------------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLST  236 (256)
Q Consensus       182 ~~~~~l------------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~  236 (256)
                      +.+++|            ++...+.++.+++             +||+|+||+++.++.++|+|||++......... ..
T Consensus        81 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~i~h~~l~~~nil~~~~~~~~l~d~~~~~~~~~~~~~-~~  159 (256)
T cd08218          81 CEGGDLYKKINAQRGVLFPEDQILDWFVQICLALKHVHDRKILHRDIKSQNIFLTKDGTIKLGDFGIARVLNSTVEL-AR  159 (256)
T ss_pred             CCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHEEEcCCCCEEEeeccceeecCcchhh-hh
Confidence            987654            3344455555555             599999999999999999999999876443221 12


Q ss_pred             eeeecccc----cccccCCCCCCC
Q 047066          237 MVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       237 ~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      ...|++.|    ...++.++.++|
T Consensus       160 ~~~~~~~~~~pe~~~~~~~~~~~D  183 (256)
T cd08218         160 TCIGTPYYLSPEICENRPYNNKSD  183 (256)
T ss_pred             hccCCccccCHHHhCCCCCCCccc
Confidence            23477777    555667777776

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek1 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek1 is associated with centrosomes throughout the cell cycle. It is involved in the formation of primary cilium and in the maintenance of centrosomes. It cycles through the nucleus and may be capable of relaying signals between the cilium and the nucleus. Nek1 is implicated in the development of polycysti

>cd05115 PTKc_Zap-70 Catalytic domain of the Protein Tyrosine Kinase, Zeta-chain-associated protein of 70kDa

Probab=99.79  E-value=2.1e-18  Score=142.39  Aligned_cols=145  Identities=20%  Similarity=0.332  Sum_probs=107.0

Q ss_pred             eeeeeCceEEEEEEEC---CCcEEEEEEecccC-hhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEecCCCCC
Q 047066          111 MIGRGGYGTVFLGSLS---DNKAIAIKKSRIVY-QSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEFVKLPT  186 (256)
Q Consensus       111 ~lg~G~~g~V~~~~~~---~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~~~~  186 (256)
                      .||+|+||.||+|.++   ++..+|+|.+.... ....+.+.+|+.++++++||||+++++++.. +..+++|||+++++
T Consensus         2 ~ig~G~~g~v~~~~~~~~~~~~~vavk~~~~~~~~~~~~~~~~E~~~l~~l~h~~ii~~~~~~~~-~~~~lv~e~~~~~~   80 (257)
T cd05115           2 ELGSGNFGCVKKGVYKMRKKQIDVAIKVLKNENEKSVRDEMMREAEIMHQLDNPYIVRMIGVCEA-EALMLVMEMASGGP   80 (257)
T ss_pred             ccCCCCcccEEEEEEecCCCceeEEEEEcccccChHHHHHHHHHHHHHHhcCCCCeEEEEEEEcC-CCeEEEEEeCCCCC
Confidence            3899999999999753   35579999886543 3344678999999999999999999998864 56899999998866


Q ss_pred             C-----------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceeeee--eee
Q 047066          187 I-----------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTM--VQG  240 (256)
Q Consensus       187 l-----------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~~--~~G  240 (256)
                      |           ++...+.++.+++             +||||+|||++.++.+||+|||+++.+..+.......  ..+
T Consensus        81 L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~  160 (257)
T cd05115          81 LNKFLSGKKDEITVSNVVELMHQVSMGMKYLEGKNFVHRDLAARNVLLVNQHYAKISDFGLSKALGADDSYYKARSAGKW  160 (257)
T ss_pred             HHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhcCeeecccchheEEEcCCCcEEeccCCccccccCCccceeccCCCCC
Confidence            5           3444455555554             5999999999999999999999998664433221111  122


Q ss_pred             cccc----cccccCCCCCCC
Q 047066          241 TLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       241 t~~y----~~~~~~~t~ksD  256 (256)
                      ++.|    ......++.++|
T Consensus       161 ~~~y~aPE~~~~~~~~~~~D  180 (257)
T cd05115         161 PLKWYAPECINFRKFSSRSD  180 (257)
T ss_pred             CcccCCHHHHccCCCCchhh
Confidence            4556    344556677776

Protein Tyrosine Kinase (PTK) family; Zeta-chain-associated protein of 70kDa (Zap-70); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Zap-70 is a member of the Syk subfamily of kinases, which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Zap-70 binds the phosphorylated ITAM (immunoreceptor tyr activation motif) sequences of the activated TCR zeta-chain through its SH2 domains, leading to its pho

>cd05041 PTKc_Fes_like Catalytic domain of Fes-like Protein Tyrosine Kinases

Probab=99.79  E-value=2.9e-18  Score=140.70  Aligned_cols=147  Identities=24%  Similarity=0.414  Sum_probs=111.1

Q ss_pred             ceeeeeCceEEEEEEECCCcEEEEEEecccCh-hHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEecCCCCCC-
Q 047066          110 RMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQ-SQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEFVKLPTI-  187 (256)
Q Consensus       110 ~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~~~~l-  187 (256)
                      +.||+|+||.||++...+++.+++|....... .....+.+|+.+++.++||||+++++++...+..++++||+.+++| 
T Consensus         1 ~~lg~g~~g~v~~~~~~~~~~v~~K~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~~~~~l~   80 (251)
T cd05041           1 EKIGKGNFGDVYKGVLKGNTEVAVKTCRSTLPPDLKRKFLQEAEILKQYDHPNIVKLIGVCVQKQPIYIVMELVPGGSLL   80 (251)
T ss_pred             CccccCCCceEEEEEEeCCCcEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCeEEEEEEEecCCCeEEEEEcCCCCcHH
Confidence            36899999999999976699999998765443 3556889999999999999999999999999999999999987654 


Q ss_pred             ----------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceee-eeeeeccc
Q 047066          188 ----------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLS-TMVQGTLG  243 (256)
Q Consensus       188 ----------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~-~~~~Gt~~  243 (256)
                                +......++.+++             +||+|+||+++.++.+||+|||++........... ....++..
T Consensus        81 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~di~p~nili~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~~  160 (251)
T cd05041          81 TFLRKKKNRLTVKKLLQMSLDAAAGMEYLESKNCIHRDLAARNCLVGENNVLKISDFGMSREEEGGIYTVSDGLKQIPIK  160 (251)
T ss_pred             HHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCEehhhcCcceEEEcCCCcEEEeeccccccccCCcceeccccCcceec
Confidence                      3333344444432             69999999999999999999999986543222111 11223445


Q ss_pred             c----cccccCCCCCCC
Q 047066          244 Y----YLHTSQGTLNKE  256 (256)
Q Consensus       244 y----~~~~~~~t~ksD  256 (256)
                      |    .+.++.++.++|
T Consensus       161 y~~PE~~~~~~~~~~~D  177 (251)
T cd05041         161 WTAPEALNYGRYTSESD  177 (251)
T ss_pred             cCChHhhccCCCCcchh
Confidence            6    455667777776

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr k

>cd06642 STKc_STK25-YSK1 Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1

Probab=99.79  E-value=1e-18  Score=145.66  Aligned_cols=151  Identities=22%  Similarity=0.310  Sum_probs=117.6

Q ss_pred             CCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC-hhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEecC
Q 047066          105 NYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY-QSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEFV  182 (256)
Q Consensus       105 ~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~  182 (256)
                      .|+..+.||+|+||.||+|... ++..+|+|.+.... ....+.+.+|+.++++++||||+++++.+...+..++|+||+
T Consensus         5 ~y~~~~~l~~g~~~~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~   84 (277)
T cd06642           5 LFTKLERIGKGSFGEVYKGIDNRTKEVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYITRYYGSYLKGTKLWIIMEYL   84 (277)
T ss_pred             HHHHHHHhcCCCCeeEEEEEEcCCCeEEEEEEeccccchHHHHHHHHHHHHHHcCCCCccHhhhcccccCCceEEEEEcc
Confidence            4666788999999999999864 57889999876433 344567899999999999999999999999999999999999


Q ss_pred             CCCCC---------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceeeeeeee
Q 047066          183 KLPTI---------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQG  240 (256)
Q Consensus       183 ~~~~l---------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~~~~G  240 (256)
                      ++++|         ++.....++.+++             +||+|+||++++++.++|+|||++..+...... .....|
T Consensus        85 ~~~~L~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~ivH~dl~p~ni~i~~~~~~~l~dfg~~~~~~~~~~~-~~~~~~  163 (277)
T cd06642          85 GGGSALDLLKPGPLEETYIATILREILKGLDYLHSERKIHRDIKAANVLLSEQGDVKLADFGVAGQLTDTQIK-RNTFVG  163 (277)
T ss_pred             CCCcHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhcCCeeccCCChheEEEeCCCCEEEccccccccccCcchh-hhcccC
Confidence            88664         4455555555554             599999999999999999999999876533211 122346


Q ss_pred             cccc----cccccCCCCCCC
Q 047066          241 TLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       241 t~~y----~~~~~~~t~ksD  256 (256)
                      +..|    +..+..++.++|
T Consensus       164 ~~~y~aPE~~~~~~~~~~~D  183 (277)
T cd06642         164 TPFWMAPEVIKQSAYDFKAD  183 (277)
T ss_pred             cccccCHHHhCcCCCchhhh
Confidence            7777    455566677776

Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25

>cd05036 PTKc_ALK_LTK Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase

Probab=99.79  E-value=1.2e-18  Score=145.32  Aligned_cols=155  Identities=19%  Similarity=0.269  Sum_probs=115.3

Q ss_pred             hcCCCcccceeeeeCceEEEEEEECC------CcEEEEEEecccC-hhHHHHHHHHHHHHHhCCCCcccceeeEEEECCE
Q 047066          102 ATNNYAYDRMIGRGGYGTVFLGSLSD------NKAIAIKKSRIVY-QSQIEQCINKVVVLSQINHRNVVGLLGCCLETEV  174 (256)
Q Consensus       102 ~~~~~~~~~~lg~G~~g~V~~~~~~~------~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~  174 (256)
                      ..++|.+.+.||+|++|.||+|.+..      +..+++|...... ......+.+|+.+++.++|+||+++++++.+.+.
T Consensus         4 ~~~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~   83 (277)
T cd05036           4 PRDSITLLRALGHGAFGEVYEGLYRGRDGDAVELQVAVKTLPESCSEQDESDFLMEALIMSKFNHQNIVRLIGVSFERLP   83 (277)
T ss_pred             CHHHcEeeeECCCCCCCcEEEEEEecCCCCCCceeEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEccCCC
Confidence            44678899999999999999998643      5678888776443 3344678999999999999999999999999889


Q ss_pred             EEEEEecCCCCCC-----------------CHHHHHHHHHHHH-------------hccCCCcEEEcCCC---cEEEEec
Q 047066          175 PLLVNEFVKLPTI-----------------SWEVRIRIAAETA-------------EDIKSINILLDDNY---TTKVCDF  221 (256)
Q Consensus       175 ~~lv~e~~~~~~l-----------------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~---~~ki~DF  221 (256)
                      .+++|||+++++|                 ++...+.++.+++             +||+|+||+++.++   .+||+||
T Consensus        84 ~~lv~e~~~g~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~ivH~dlkp~nil~~~~~~~~~~kl~df  163 (277)
T cd05036          84 RFILLELMAGGDLKSFLRENRPRPERPSSLTMKDLLFCARDVAKGCKYLEENHFIHRDIAARNCLLTCKGPGRVAKIADF  163 (277)
T ss_pred             cEEEEecCCCCCHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCEeecccchheEEEeccCCCcceEeccC
Confidence            9999999987655                 3334445555554             69999999998654   6999999


Q ss_pred             CCceecCCCCceee-eeeeecccc----cccccCCCCCCC
Q 047066          222 GASKLVPIDETQLS-TMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       222 Gla~~~~~~~~~~~-~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      |+++.+........ ....+++.|    ++.++.+|.++|
T Consensus       164 g~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~D  203 (277)
T cd05036         164 GMARDIYRASYYRKGGRAMLPIKWMPPEAFLDGIFTSKTD  203 (277)
T ss_pred             ccccccCCccceecCCCCCccHhhCCHHHHhcCCcCchhH
Confidence            99987643222111 111223456    455667788877

Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well

>cd05610 STKc_MASTL Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase

Probab=99.79  E-value=2.3e-18  Score=159.95  Aligned_cols=140  Identities=23%  Similarity=0.291  Sum_probs=111.2

Q ss_pred             CCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC---hhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEE
Q 047066          104 NNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY---QSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVN  179 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~  179 (256)
                      ++|.+.+.||+|+||.||+|... +++.||+|.++...   ......+..|+.++..++||||+++++.+...+..++||
T Consensus         4 ~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiKvi~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~~~lVm   83 (669)
T cd05610           4 EEFVIVKPISRGAFGKVYLGRKKNNSKLYAVKVVKKADMINKNMVHQVQAERDALALSKSPFIVHLYYSLQSANNVYLVM   83 (669)
T ss_pred             CCEEEEEEEecCCCeEEEEEEECCCCcEEEEEEEehhhccCHHHHHHHHHHHHHHHhcCCCCcCeEEEEEEECCEEEEEE
Confidence            57889999999999999999976 68899999886432   334467889999999999999999999999999999999


Q ss_pred             ecCCCCCC----------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceeee
Q 047066          180 EFVKLPTI----------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLST  236 (256)
Q Consensus       180 e~~~~~~l----------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~  236 (256)
                      ||+.+++|          .+...+.++.|++             |||||+|||++.++.+||+|||+++........ ..
T Consensus        84 Ey~~g~~L~~li~~~~~l~~~~~~~i~~qil~aL~yLH~~gIiHrDLKP~NILl~~~g~vkL~DFGls~~~~~~~~~-~~  162 (669)
T cd05610          84 EYLIGGDVKSLLHIYGYFDEEMAVKYISEVALALDYLHRHGIIHRDLKPDNMLISNEGHIKLTDFGLSKVTLNRELN-MM  162 (669)
T ss_pred             eCCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCEEeCCccHHHEEEcCCCCEEEEeCCCCccccCCccc-cc
Confidence            99988765          3333445555543             799999999999999999999999876433222 22


Q ss_pred             eeeecccc
Q 047066          237 MVQGTLGY  244 (256)
Q Consensus       237 ~~~Gt~~y  244 (256)
                      ...||+.|
T Consensus       163 ~~~~t~~~  170 (669)
T cd05610         163 DILTTPSM  170 (669)
T ss_pred             ccccCccc
Confidence            23466655

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ1481

>cd06617 PKc_MKK3_6 Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6

Probab=99.78  E-value=3.3e-18  Score=142.82  Aligned_cols=139  Identities=22%  Similarity=0.331  Sum_probs=105.5

Q ss_pred             CCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC-hhHHHHHHHHHHH-HHhCCCCcccceeeEEEECCEEEEEEe
Q 047066          104 NNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY-QSQIEQCINKVVV-LSQINHRNVVGLLGCCLETEVPLLVNE  180 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~E~~~-l~~l~h~niv~l~~~~~~~~~~~lv~e  180 (256)
                      ++|++.+.||+|+||.||++..+ ++..||+|.+.... ......+..|... ++.++|||++++++++...+..++++|
T Consensus         1 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~~~~~~~iv~~~~~~~~~~~~~lv~e   80 (283)
T cd06617           1 DDLEVIEELGRGAYGVVDKMRHVPTGTIMAVKRIRATVNSQEQKRLLMDLDISMRSVDCPYTVTFYGALFREGDVWICME   80 (283)
T ss_pred             CCceEEEEecccCCeEEEEEEEcCCCcEEEEEEEecCCCcHHHHHHHHHHHHHHHHcCCCCeeeeeEEEecCCcEEEEhh
Confidence            36888899999999999999975 68999999886532 2233456667665 566699999999999999999999999


Q ss_pred             cCCCC-------------CCCHHHHHHHHHHHH--------------hccCCCcEEEcCCCcEEEEecCCceecCCCCce
Q 047066          181 FVKLP-------------TISWEVRIRIAAETA--------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQ  233 (256)
Q Consensus       181 ~~~~~-------------~l~~~~~~~~~~~i~--------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~  233 (256)
                      |+++.             .+++.....++.|++              +||||+||++++++.+||+|||+++....... 
T Consensus        81 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~i~h~dlkp~nil~~~~~~~kl~dfg~~~~~~~~~~-  159 (283)
T cd06617          81 VMDTSLDKFYKKVYDKGLTIPEDILGKIAVSIVKALEYLHSKLSVIHRDVKPSNVLINRNGQVKLCDFGISGYLVDSVA-  159 (283)
T ss_pred             hhcccHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhcCCeecCCCCHHHEEECCCCCEEEeecccccccccccc-
Confidence            99751             244555555555544              69999999999999999999999987643211 


Q ss_pred             eeeeeeecccc
Q 047066          234 LSTMVQGTLGY  244 (256)
Q Consensus       234 ~~~~~~Gt~~y  244 (256)
                       .+...|+..|
T Consensus       160 -~~~~~~~~~y  169 (283)
T cd06617         160 -KTIDAGCKPY  169 (283)
T ss_pred             -cccccCCccc
Confidence             1223477777

Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs

>cd07839 STKc_CDK5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5

Probab=99.78  E-value=6.2e-19  Score=147.33  Aligned_cols=151  Identities=24%  Similarity=0.328  Sum_probs=114.8

Q ss_pred             CCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC--hhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEec
Q 047066          105 NYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY--QSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEF  181 (256)
Q Consensus       105 ~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~  181 (256)
                      +|++.+.||+|+||.||+|..+ +|..+++|.+....  ......+.+|+.+++.++|||++++++++.+.+..++++||
T Consensus         1 ~y~~~~~l~~g~~~~vy~~~~~~~g~~~~~k~~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   80 (284)
T cd07839           1 KYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLYDVLHSDKKLTLVFEY   80 (284)
T ss_pred             CceeEEEecccCCeEEEEEEECCCCcEEEEEEeecccccccCccchhHHHHHHHhcCCCCeeeHHHHhccCCceEEEEec
Confidence            4778899999999999999975 68899999876432  22235678899999999999999999999999999999999


Q ss_pred             CCC----------CCCCHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceeeeee
Q 047066          182 VKL----------PTISWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMV  238 (256)
Q Consensus       182 ~~~----------~~l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~~~  238 (256)
                      +++          +.+++.....++.|++             +||+|+||+++.++.+||+|||+++......... ...
T Consensus        81 ~~~~l~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~~~i~H~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~-~~~  159 (284)
T cd07839          81 CDQDLKKYFDSCNGDIDPEIVKSFMFQLLKGLAFCHSHNVLHRDLKPQNLLINKNGELKLADFGLARAFGIPVRCY-SAE  159 (284)
T ss_pred             CCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCEecCCCCHHHEEEcCCCcEEECccchhhccCCCCCCc-CCC
Confidence            975          3345555566666655             6999999999999999999999998764332221 223


Q ss_pred             eecccc----cccc-cCCCCCCC
Q 047066          239 QGTLGY----YLHT-SQGTLNKE  256 (256)
Q Consensus       239 ~Gt~~y----~~~~-~~~t~ksD  256 (256)
                      .+++.|    .+.+ ..++.++|
T Consensus       160 ~~~~~y~aPE~~~~~~~~~~~~D  182 (284)
T cd07839         160 VVTLWYRPPDVLFGAKLYSTSID  182 (284)
T ss_pred             ccccCCcChHHHhCCcccCcHHH
Confidence            467777    2222 33566665

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also

>cd07842 STKc_CDK8_like Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases

Probab=99.78  E-value=1.8e-18  Score=146.59  Aligned_cols=152  Identities=25%  Similarity=0.309  Sum_probs=114.2

Q ss_pred             CCcccceeeeeCceEEEEEEEC---CCcEEEEEEecccC---hhHHHHHHHHHHHHHhCCCCcccceeeEEEEC--CEEE
Q 047066          105 NYAYDRMIGRGGYGTVFLGSLS---DNKAIAIKKSRIVY---QSQIEQCINKVVVLSQINHRNVVGLLGCCLET--EVPL  176 (256)
Q Consensus       105 ~~~~~~~lg~G~~g~V~~~~~~---~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~--~~~~  176 (256)
                      .|++.+.||+|++|.||+|...   ++..+|+|.+....   ....+.+.+|+.++..++||||+++++++...  +..+
T Consensus         1 ~y~~~~~ig~g~~g~v~~~~~~~~~~~~~~alK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~   80 (316)
T cd07842           1 KYEIEGCIGRGTYGRVYKAKRKNGKDGKEYAIKKFKGDKEQYTGISQSACREIALLRELKHENVVSLVEVFLEHADKSVY   80 (316)
T ss_pred             CceEEEEeccCCcEEEEEEEecCCCCCCeEEEEEeccccccccCccHHHHHHHHHHHhcCCCCccceEEEEeCCCCceEE
Confidence            3778889999999999999964   47899999886532   33446778899999999999999999999987  8899


Q ss_pred             EEEecCCCC--------------CCCHHHHHHHHHHHH-------------hccCCCcEEEcC----CCcEEEEecCCce
Q 047066          177 LVNEFVKLP--------------TISWEVRIRIAAETA-------------EDIKSINILLDD----NYTTKVCDFGASK  225 (256)
Q Consensus       177 lv~e~~~~~--------------~l~~~~~~~~~~~i~-------------rdlk~~NiLi~~----~~~~ki~DFGla~  225 (256)
                      +||||+++.              .++......++.|++             +||+|+||+++.    ++.+||+|||+++
T Consensus        81 lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~h~dlkp~Nil~~~~~~~~~~~kl~Dfg~~~  160 (316)
T cd07842          81 LLFDYAEHDLWQIIKFHRQAKRVSIPPSMVKSLLWQILNGVHYLHSNWVLHRDLKPANILVMGEGPERGVVKIGDLGLAR  160 (316)
T ss_pred             EEEeCCCcCHHHHHHhhccCCCcCcCHHHHHHHHHHHHHHHHHHHhCCEeeCCCCHHHEEEcCCCCccceEEECCCcccc
Confidence            999999752              234444445555544             699999999999    9999999999998


Q ss_pred             ecCCCCce--eeeeeeecccc----cccc-cCCCCCCC
Q 047066          226 LVPIDETQ--LSTMVQGTLGY----YLHT-SQGTLNKE  256 (256)
Q Consensus       226 ~~~~~~~~--~~~~~~Gt~~y----~~~~-~~~t~ksD  256 (256)
                      ........  ......||+.|    .+.+ ..++.++|
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~D  198 (316)
T cd07842         161 LFNAPLKPLADLDPVVVTIWYRAPELLLGARHYTKAID  198 (316)
T ss_pred             ccCCCcccccccCCccccccccCHHHHhCCCCCCcHHH
Confidence            76443221  12234577777    2222 34566665

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the

>cd05087 PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases 1 and 3

Probab=99.78  E-value=3e-18  Score=142.22  Aligned_cols=134  Identities=26%  Similarity=0.375  Sum_probs=101.7

Q ss_pred             eeeeeCceEEEEEEECC---CcEEEEEEecccC-hhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEecCCCCC
Q 047066          111 MIGRGGYGTVFLGSLSD---NKAIAIKKSRIVY-QSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEFVKLPT  186 (256)
Q Consensus       111 ~lg~G~~g~V~~~~~~~---~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~~~~  186 (256)
                      .||+|+||.||+|...+   +..+++|.++... ......+.+|+.+++.++||||+++++++.+....+++|||+++++
T Consensus         2 ~lg~G~~g~Vy~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~g~   81 (269)
T cd05087           2 EIGNGWFGKVILGEVNSGYTPAQVVVKELRVSASVQEQMKFLEEAQPYRSLQHSNLLQCLGQCTEVTPYLLVMEFCPLGD   81 (269)
T ss_pred             cccccCCceEEEEEEcCCCCceEEEEEecCCCCChHHHHHHHHHHHHHHhCCCCCEeeEEEEEcCCCCcEEEEECCCCCc
Confidence            58999999999998643   4578999876543 3334578899999999999999999999999889999999999887


Q ss_pred             CCHH---------------HHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceee-ee
Q 047066          187 ISWE---------------VRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLS-TM  237 (256)
Q Consensus       187 l~~~---------------~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~-~~  237 (256)
                      |...               ....++.|++             +||||+||+++.++.+||+|||+++.......... ..
T Consensus        82 L~~~l~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~i~H~dlkp~nil~~~~~~~kL~dfg~~~~~~~~~~~~~~~~  161 (269)
T cd05087          82 LKGYLRSCRKAELMTPDPTTLQRMACEIALGLLHLHKNNFIHSDLALRNCLLTADLTVKIGDYGLSHNKYKEDYYVTPDQ  161 (269)
T ss_pred             HHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHCCEeccccCcceEEEcCCCcEEECCccccccccCcceeecCCC
Confidence            6322               2233444444             69999999999999999999999976543322111 12


Q ss_pred             eeecccc
Q 047066          238 VQGTLGY  244 (256)
Q Consensus       238 ~~Gt~~y  244 (256)
                      ..|++.|
T Consensus       162 ~~~~~~y  168 (269)
T cd05087         162 LWVPLRW  168 (269)
T ss_pred             cCCcccc
Confidence            3456666

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 1 (Aatyk1) and Aatyk3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk1 and Aatyk3 are members of the Aatyk subfamily of proteins. Aatyk3 is a receptor kinase containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 has a similar domain arrangement but without the transmembrane segment and is thus, a cytoplasmic (or nonreceptor) kinase. The expression of Aatyk1 (also referred simply as Aatyk) is upregulated during growth arrest and apoptosis in myeloid cells

>cd05109 PTKc_HER2 Catalytic domain of the Protein Tyrosine Kinase, HER2

Probab=99.78  E-value=2.4e-18  Score=143.53  Aligned_cols=153  Identities=22%  Similarity=0.366  Sum_probs=113.9

Q ss_pred             cCCCcccceeeeeCceEEEEEEEC-CCc----EEEEEEecccC-hhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEE
Q 047066          103 TNNYAYDRMIGRGGYGTVFLGSLS-DNK----AIAIKKSRIVY-QSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPL  176 (256)
Q Consensus       103 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~----~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~  176 (256)
                      .++|++.+.||+|+||.||+|.+. ++.    .||+|.+.... ....+.+.+|+.++..++||||+++++++... ..+
T Consensus         6 ~~~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~-~~~   84 (279)
T cd05109           6 ETELKKVKVLGSGAFGTVYKGIWIPDGENVKIPVAIKVLRENTSPKANKEILDEAYVMAGVGSPYVCRLLGICLTS-TVQ   84 (279)
T ss_pred             hhheeeeeecCCCCCceEEEEEEecCCCccceEEEEEEecCCCCHHHHHHHHHHHHHHHhcCCCCCceEEEEEcCC-CcE
Confidence            357888899999999999999853 444    48999876433 44456788999999999999999999999754 467


Q ss_pred             EEEecCCCCCC-----------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCc
Q 047066          177 LVNEFVKLPTI-----------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDET  232 (256)
Q Consensus       177 lv~e~~~~~~l-----------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~  232 (256)
                      +++||+++|++           ++...+.++.|++             +||||+|||+++++.+||+|||+++.+.....
T Consensus        85 l~~~~~~~g~l~~~l~~~~~~~~~~~~~~~~~qi~~~L~~lH~~~iiH~dlkp~Nil~~~~~~~kL~dfG~~~~~~~~~~  164 (279)
T cd05109          85 LVTQLMPYGCLLDYVRENKDRIGSQDLLNWCVQIAKGMSYLEEVRLVHRDLAARNVLVKSPNHVKITDFGLARLLDIDET  164 (279)
T ss_pred             EEEEcCCCCCHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHCCeeccccccceEEEcCCCcEEECCCCceeecccccc
Confidence            89999987654           4444455566655             69999999999999999999999987754332


Q ss_pred             eee-eeeeecccc----cccccCCCCCCC
Q 047066          233 QLS-TMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       233 ~~~-~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      ... ....+++.|    ...++.++.++|
T Consensus       165 ~~~~~~~~~~~~y~~PE~~~~~~~~~~~D  193 (279)
T cd05109         165 EYHADGGKVPIKWMALESILHRRFTHQSD  193 (279)
T ss_pred             eeecCCCccchhhCCHHHhccCCCCchhH
Confidence            211 112245556    445566777776

Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve

>cd06651 STKc_MEKK3 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 3

Probab=99.78  E-value=5.7e-18  Score=140.34  Aligned_cols=153  Identities=21%  Similarity=0.303  Sum_probs=116.0

Q ss_pred             CCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC-----hhHHHHHHHHHHHHHhCCCCcccceeeEEEE--CCEE
Q 047066          104 NNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY-----QSQIEQCINKVVVLSQINHRNVVGLLGCCLE--TEVP  175 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~-----~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~--~~~~  175 (256)
                      .+|+..+.||+|+||.||++... ++..+++|.+....     ......+.+|+.+++.++||||+++++++..  .+..
T Consensus         2 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~   81 (266)
T cd06651           2 INWRRGKLLGQGAFGRVYLCYDVDTGRELAAKQVQFDPESPETSKEVSALECEIQLLKNLQHERIVQYYGCLRDRAEKTL   81 (266)
T ss_pred             CCccccceecCCCCEEEEEEEEcCCCcEEEEEEeecCcCCchhHHHHHHHHHHHHHHHHcCCCCeeeEEEEEEcCCCCEE
Confidence            36888899999999999999864 58899999875321     2334578899999999999999999998875  4678


Q ss_pred             EEEEecCCCCCC----------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCc
Q 047066          176 LLVNEFVKLPTI----------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDET  232 (256)
Q Consensus       176 ~lv~e~~~~~~l----------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~  232 (256)
                      ++++||+++++|          ++.....++.+++             +||+|+||+++.++.+||+|||+++.+.....
T Consensus        82 ~l~~e~~~~~~L~~~l~~~~~l~~~~~~~~~~qi~~~l~~LH~~~i~H~~l~p~nil~~~~~~~~l~dfg~~~~~~~~~~  161 (266)
T cd06651          82 TIFMEYMPGGSVKDQLKAYGALTESVTRKYTRQILEGMSYLHSNMIVHRDIKGANILRDSAGNVKLGDFGASKRLQTICM  161 (266)
T ss_pred             EEEEeCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhCCeeeCCCCHHHEEECCCCCEEEccCCCccccccccc
Confidence            899999987654          3444455555554             69999999999999999999999986543211


Q ss_pred             --eeeeeeeecccc----cccccCCCCCCC
Q 047066          233 --QLSTMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       233 --~~~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                        .......|+..|    ++.+..++.++|
T Consensus       162 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~D  191 (266)
T cd06651         162 SGTGIRSVTGTPYWMSPEVISGEGYGRKAD  191 (266)
T ss_pred             cCCccccCCccccccCHHHhCCCCCCchhh
Confidence              111223477778    555666777776

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK3 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development

>cd05043 PTK_Ryk Pseudokinase domain of Ryk (Receptor related to tyrosine kinase)

Probab=99.78  E-value=2.2e-18  Score=143.84  Aligned_cols=156  Identities=18%  Similarity=0.340  Sum_probs=117.1

Q ss_pred             hhcCCCcccceeeeeCceEEEEEEECC-----CcEEEEEEecccC-hhHHHHHHHHHHHHHhCCCCcccceeeEEEE-CC
Q 047066          101 IATNNYAYDRMIGRGGYGTVFLGSLSD-----NKAIAIKKSRIVY-QSQIEQCINKVVVLSQINHRNVVGLLGCCLE-TE  173 (256)
Q Consensus       101 ~~~~~~~~~~~lg~G~~g~V~~~~~~~-----~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~-~~  173 (256)
                      +..++|++.+.||+|+||.||+|....     +..|++|.+.... ....+.+.+|+.+++.++|||++++++++.. ..
T Consensus         3 ~~~~~~~~~~~i~~g~~g~V~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~   82 (280)
T cd05043           3 ISRDRVTLSDLLQEGTFGRIFYGILIDEKPGKEEEVFVKTVKDHASEIQVTLLLQESCLLYGLSHQNILPILHVCIEDGE   82 (280)
T ss_pred             cchhheEEeeeecccCCceEEEEEEecCCCCceeEEEEEEccCCCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCC
Confidence            345789999999999999999999754     6789999876543 4455778999999999999999999998876 56


Q ss_pred             EEEEEEecCCCCCC------------------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecC
Q 047066          174 VPLLVNEFVKLPTI------------------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFG  222 (256)
Q Consensus       174 ~~~lv~e~~~~~~l------------------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFG  222 (256)
                      ..++++||+.+++|                  ++.....++.+++             +||+|+||++++++.+||+|||
T Consensus        83 ~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~i~H~di~p~nil~~~~~~~kl~d~g  162 (280)
T cd05043          83 PPFVLYPYMNWGNLKLFLQQCRLGEANNPQALSTQQLVHMAIQIACGMSYLHKRGVIHKDIAARNCVIDEELQVKITDNA  162 (280)
T ss_pred             CCEEEEEcCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHHHHHHHHCCEeecccCHhhEEEcCCCcEEECCCC
Confidence            78999999876554                  3444455555554             6999999999999999999999


Q ss_pred             CceecCCCCcee-eeeeeecccc----cccccCCCCCCC
Q 047066          223 ASKLVPIDETQL-STMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       223 la~~~~~~~~~~-~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      +++.+..+.... .....++..|    +.....++.++|
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~y~apE~~~~~~~~~~~D  201 (280)
T cd05043         163 LSRDLFPMDYHCLGDNENRPVKWMALESLVNKEYSSASD  201 (280)
T ss_pred             CcccccCCceEEeCCCCCcchhccCHHHHhcCCCCchhh
Confidence            998764332221 1112345556    444455677766

Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It

>cd05089 PTKc_Tie1 Catalytic domain of the Protein Tyrosine Kinase, Tie1

Probab=99.78  E-value=3e-18  Score=144.40  Aligned_cols=124  Identities=23%  Similarity=0.446  Sum_probs=99.8

Q ss_pred             CCCcccceeeeeCceEEEEEEECC-C--cEEEEEEeccc-ChhHHHHHHHHHHHHHhC-CCCcccceeeEEEECCEEEEE
Q 047066          104 NNYAYDRMIGRGGYGTVFLGSLSD-N--KAIAIKKSRIV-YQSQIEQCINKVVVLSQI-NHRNVVGLLGCCLETEVPLLV  178 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~V~~~~~~~-~--~~vavK~~~~~-~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~lv  178 (256)
                      ++|++.+.||+|+||.||+|..++ +  ..+++|.++.. .....+.+.+|+.++.++ +||||+++++++...+..+++
T Consensus         2 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~~lv   81 (297)
T cd05089           2 EDIKFEDVIGEGNFGQVIRAMIKKDGLKMNAAIKMLKEFASENDHRDFAGELEVLCKLGHHPNIINLLGACENRGYLYIA   81 (297)
T ss_pred             ccceeeeeecCCCcceEEEEEecCCCCcceeEEEEccccCCHHHHHHHHHHHHHHHhhcCCCchhheEEEEccCCcceEE
Confidence            578888999999999999998653 3  34688877643 334456789999999999 799999999999999999999


Q ss_pred             EecCCCCCCC--------------------------HHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEE
Q 047066          179 NEFVKLPTIS--------------------------WEVRIRIAAETA-------------EDIKSINILLDDNYTTKVC  219 (256)
Q Consensus       179 ~e~~~~~~l~--------------------------~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~  219 (256)
                      +||+++++|.                          +.....++.|++             +||||+|||+++++.+||+
T Consensus        82 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~lH~~~ivH~dlkp~Nill~~~~~~kl~  161 (297)
T cd05089          82 IEYAPYGNLLDFLRKSRVLETDPAFAKEHGTASTLTSQQLLQFASDVATGMQYLSEKQFIHRDLAARNVLVGENLASKIA  161 (297)
T ss_pred             EEecCCCcHHHHHHhccccccccccccccCccCCCCHHHHHHHHHHHHHHHHHHHHCCcccCcCCcceEEECCCCeEEEC
Confidence            9999876652                          333344444443             6999999999999999999


Q ss_pred             ecCCceec
Q 047066          220 DFGASKLV  227 (256)
Q Consensus       220 DFGla~~~  227 (256)
                      |||++...
T Consensus       162 dfg~~~~~  169 (297)
T cd05089         162 DFGLSRGE  169 (297)
T ss_pred             CcCCCccc
Confidence            99998753

Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations.

>cd05042 PTKc_Aatyk Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases

Probab=99.78  E-value=2.3e-18  Score=142.92  Aligned_cols=118  Identities=30%  Similarity=0.416  Sum_probs=94.6

Q ss_pred             eeeeeCceEEEEEEECC---CcEEEEEEecccC-hhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEecCCCCC
Q 047066          111 MIGRGGYGTVFLGSLSD---NKAIAIKKSRIVY-QSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEFVKLPT  186 (256)
Q Consensus       111 ~lg~G~~g~V~~~~~~~---~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~~~~  186 (256)
                      .||+|+||.||+|...+   ...+++|.+.... ......+.+|+..++.++||||+++++.+...+..+++|||+++++
T Consensus         2 ~lg~G~fg~v~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~~~~l~h~nii~~~~~~~~~~~~~lv~e~~~~g~   81 (269)
T cd05042           2 EIGNGWFGKVLLGEAHRGMSKARVVVKELRASATPDEQLLFLQEVQPYRELNHPNVLQCLGQCIESIPYLLVLEFCPLGD   81 (269)
T ss_pred             cCCccCCceEEEEEEecCCCCeEEEEeecCccCChHHHHHHHHHHHHHHhCCCCCcceEEEEECCCCceEEEEEeCCCCc
Confidence            58999999999997533   3467888765433 3344678899999999999999999999999999999999999877


Q ss_pred             CCH---------------HHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecC
Q 047066          187 ISW---------------EVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVP  228 (256)
Q Consensus       187 l~~---------------~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~  228 (256)
                      |..               .....++.|++             +||||+|||++.++.+||+|||+++...
T Consensus        82 L~~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~Nill~~~~~~kl~dfg~~~~~~  151 (269)
T cd05042          82 LKNYLRSNRGMVAQMAQKDVLQRMACEVASGLLWLHQADFIHSDLALRNCQLTADLSVKIGDYGLALEQY  151 (269)
T ss_pred             HHHHHHhccccccccccHHHHHHHHHHHHHHHHHHHhcCEecccccHhheEecCCCcEEEeccccccccc
Confidence            632               22234444444             6999999999999999999999997643

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kina

>cd05082 PTKc_Csk Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase

Probab=99.78  E-value=2.8e-18  Score=141.29  Aligned_cols=148  Identities=20%  Similarity=0.369  Sum_probs=112.0

Q ss_pred             hcCCCcccceeeeeCceEEEEEEECCCcEEEEEEecccChhHHHHHHHHHHHHHhCCCCcccceeeEEE-ECCEEEEEEe
Q 047066          102 ATNNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCL-ETEVPLLVNE  180 (256)
Q Consensus       102 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~-~~~~~~lv~e  180 (256)
                      ..++|++.+.||+|+||.||++.. .+..+++|......  ..+.+.+|+.+++.++|+|++++++++. ..+..++++|
T Consensus         4 ~~~~~~~~~~lg~g~~~~v~~~~~-~~~~~~~k~~~~~~--~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~lv~e   80 (256)
T cd05082           4 NMKELKLLQTIGKGEFGDVMLGDY-RGNKVAVKCIKNDA--TAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTE   80 (256)
T ss_pred             cHHhCeeeeeecccCCCeEEEEEE-cCCcEEEEEeCCCc--hHHHHHHHHHHHHhCCCCCeeeEEEEEEcCCCceEEEEE
Confidence            446788999999999999999987 47789999875432  3457889999999999999999999765 4567899999


Q ss_pred             cCCCCCC------------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceee
Q 047066          181 FVKLPTI------------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLS  235 (256)
Q Consensus       181 ~~~~~~l------------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~  235 (256)
                      |+++++|            ++.....++.+++             +||||+||++++++.+||+|||+++.......   
T Consensus        81 ~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~nil~~~~~~~kl~dfg~~~~~~~~~~---  157 (256)
T cd05082          81 YMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEANNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQD---  157 (256)
T ss_pred             CCCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCEeccccchheEEEcCCCcEEecCCccceeccccCC---
Confidence            9988665            3344455555554             69999999999999999999999986543221   


Q ss_pred             eeeeecccc----cccccCCCCCCC
Q 047066          236 TMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       236 ~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                       ...++..|    +.....++.++|
T Consensus       158 -~~~~~~~y~aPE~~~~~~~~~~~D  181 (256)
T cd05082         158 -TGKLPVKWTAPEALREKKFSTKSD  181 (256)
T ss_pred             -CCccceeecCHHHHccCCCCchhh
Confidence             12234445    444556666666

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, re

>cd07864 STKc_CDK12 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12

Probab=99.78  E-value=2.5e-18  Score=144.95  Aligned_cols=155  Identities=26%  Similarity=0.335  Sum_probs=116.7

Q ss_pred             hcCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC--hhHHHHHHHHHHHHHhCCCCcccceeeEEEECC-----
Q 047066          102 ATNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY--QSQIEQCINKVVVLSQINHRNVVGLLGCCLETE-----  173 (256)
Q Consensus       102 ~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~-----  173 (256)
                      ..++|++.+.||+|+||.||+|..+ +++.+++|.++...  ......+.+|+.+++.++|||++++++++.+.+     
T Consensus         5 ~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~~~~~~~~~~~~~~~   84 (302)
T cd07864           5 CVDKFDIIGQIGEGTYGQVYKARDKDTGELVALKKVRLDNEKEGFPITAIREIKILRQLNHRNIVNLKEIVTDKQDALDF   84 (302)
T ss_pred             hhhhhheeeeecccCCEEEEEEEECCCCcEEEEEEEeecccccCchHHHHHHHHHHHhCCCCCeeeeeheecCcchhhhc
Confidence            4467899999999999999999975 58899999886432  223356778999999999999999999987654     


Q ss_pred             -----EEEEEEecCCC----------CCCCHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCce
Q 047066          174 -----VPLLVNEFVKL----------PTISWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASK  225 (256)
Q Consensus       174 -----~~~lv~e~~~~----------~~l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~  225 (256)
                           ..++++||+++          ..+++.....++.+++             +||+|+||++++++.+||+|||++.
T Consensus        85 ~~~~~~~~lv~e~~~~~l~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~i~H~dl~p~nili~~~~~~kl~dfg~~~  164 (302)
T cd07864          85 KKDKGAFYLVFEYMDHDLMGLLESGLVHFSEDHIKSFMKQLLEGLNYCHKKNFLHRDIKCSNILLNNKGQIKLADFGLAR  164 (302)
T ss_pred             cccCCcEEEEEcccCccHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEECCCCcEEeCcccccc
Confidence                 78999999976          2356666666666655             6999999999999999999999998


Q ss_pred             ecCCCCceeeeeeeecccc-----cccccCCCCCCC
Q 047066          226 LVPIDETQLSTMVQGTLGY-----YLHTSQGTLNKE  256 (256)
Q Consensus       226 ~~~~~~~~~~~~~~Gt~~y-----~~~~~~~t~ksD  256 (256)
                      .+............+++.|     ......++.++|
T Consensus       165 ~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~D  200 (302)
T cd07864         165 LYNSEESRPYTNKVITLWYRPPELLLGEERYGPAID  200 (302)
T ss_pred             cccCCcccccccceeccCccChHHhcCCCCCCchhH
Confidence            7654332222223356566     222334566665

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely

>KOG1151 consensus Tousled-like protein kinase [Signal transduction mechanisms]

Probab=99.78  E-value=2.3e-19  Score=151.99  Aligned_cols=143  Identities=22%  Similarity=0.325  Sum_probs=110.0

Q ss_pred             hcCCCcccceeeeeCceEEEEEEE-CCCcEEEEEEecc--cChh-----HHHHHHHHHHHHHhCCCCcccceeeEEE-EC
Q 047066          102 ATNNYAYDRMIGRGGYGTVFLGSL-SDNKAIAIKKSRI--VYQS-----QIEQCINKVVVLSQINHRNVVGLLGCCL-ET  172 (256)
Q Consensus       102 ~~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vavK~~~~--~~~~-----~~~~~~~E~~~l~~l~h~niv~l~~~~~-~~  172 (256)
                      ..++|-++.+||+|+|++||++.. ...+.||+|+-..  ...+     ......+|..+-+.|+||.||++++++. +.
T Consensus       461 Ln~RYLlLhLLGrGGFSEVyKAFDl~EqRYvAvKIHqlNK~WrdEKKeNYhKHAcREyrIHKeLDHpRIVKlYDyfslDt  540 (775)
T KOG1151|consen  461 LNDRYLLLHLLGRGGFSEVYKAFDLTEQRYVAVKIHQLNKNWRDEKKENYHKHACREYRIHKELDHPRIVKLYDYFSLDT  540 (775)
T ss_pred             hHHHHHHHHHhccccHHHHHHhcccchhheeeEeeehhccchhhHhhhhHHHHHHHHHhhhhccCcceeeeeeeeeeecc
Confidence            345688889999999999999984 4577889986532  2221     1245788999999999999999999987 56


Q ss_pred             CEEEEEEecCCCCCCCHH----------HHHHHHHHHH---------------hccCCCcEEEc---CCCcEEEEecCCc
Q 047066          173 EVPLLVNEFVKLPTISWE----------VRIRIAAETA---------------EDIKSINILLD---DNYTTKVCDFGAS  224 (256)
Q Consensus       173 ~~~~lv~e~~~~~~l~~~----------~~~~~~~~i~---------------rdlk~~NiLi~---~~~~~ki~DFGla  224 (256)
                      +.++-|+|||++..|+..          ....|..||.               -||||.|||+-   .-|.+||+||||+
T Consensus       541 dsFCTVLEYceGNDLDFYLKQhklmSEKEARSIiMQiVnAL~YLNEikpPIIHYDLKPgNILLv~GtacGeIKITDFGLS  620 (775)
T KOG1151|consen  541 DSFCTVLEYCEGNDLDFYLKQHKLMSEKEARSIIMQIVNALKYLNEIKPPIIHYDLKPGNILLVNGTACGEIKITDFGLS  620 (775)
T ss_pred             ccceeeeeecCCCchhHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCeeeeccCCccEEEecCcccceeEeeecchh
Confidence            778999999999887544          3456666665               39999999994   3478999999999


Q ss_pred             eecCCCCcee------eeeeeecccc
Q 047066          225 KLVPIDETQL------STMVQGTLGY  244 (256)
Q Consensus       225 ~~~~~~~~~~------~~~~~Gt~~y  244 (256)
                      +++.++....      .....||.||
T Consensus       621 KIMdddSy~~vdGmeLTSQgAGTYWY  646 (775)
T KOG1151|consen  621 KIMDDDSYNSVDGMELTSQGAGTYWY  646 (775)
T ss_pred             hhccCCccCcccceeeecccCceeee
Confidence            9987654331      2234699999

>cd06607 STKc_TAO Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins

Probab=99.78  E-value=6.9e-18  Score=142.89  Aligned_cols=149  Identities=28%  Similarity=0.359  Sum_probs=115.9

Q ss_pred             cCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC---hhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEE
Q 047066          103 TNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY---QSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLV  178 (256)
Q Consensus       103 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv  178 (256)
                      ...|...+.||+|+||.||++... +++.|++|.+....   ......+.+|+.+++.++|||++++.+++...+..+++
T Consensus        14 ~~~y~~~~~lg~g~~g~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~~Ei~~l~~l~h~niv~~~~~~~~~~~~~lv   93 (307)
T cd06607          14 EKLFTDLREIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQQLRHPNTIEYKGCYLREHTAWLV   93 (307)
T ss_pred             chhhhhheeecCCCCeEEEEEEEcCCCcEEEEEEEeccccCcHHHHHHHHHHHHHHHhCCCCCEEEEEEEEEeCCeEEEE
Confidence            356888899999999999999865 68899999875332   33446788999999999999999999999999999999


Q ss_pred             EecCCC----------CCCCHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceee
Q 047066          179 NEFVKL----------PTISWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLS  235 (256)
Q Consensus       179 ~e~~~~----------~~l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~  235 (256)
                      +||+.+          +.+++.....++.|++             +||+|+||+++.++.+||+|||++.......    
T Consensus        94 ~e~~~g~l~~~~~~~~~~l~~~~~~~~~~ql~~~L~~LH~~~i~H~dl~p~nIl~~~~~~~kL~dfg~~~~~~~~~----  169 (307)
T cd06607          94 MEYCLGSASDILEVHKKPLQEVEIAAICHGALQGLAYLHSHERIHRDIKAGNILLTEPGTVKLADFGSASLVSPAN----  169 (307)
T ss_pred             HHhhCCCHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHCCceecCCCcccEEECCCCCEEEeecCcceecCCCC----
Confidence            999875          2355555555655554             6999999999999999999999998654321    


Q ss_pred             eeeeecccc----cc---cccCCCCCCC
Q 047066          236 TMVQGTLGY----YL---HTSQGTLNKE  256 (256)
Q Consensus       236 ~~~~Gt~~y----~~---~~~~~t~ksD  256 (256)
                       ...|++.|    .+   ..+.++.++|
T Consensus       170 -~~~~~~~y~aPE~~~~~~~~~~~~~sD  196 (307)
T cd06607         170 -SFVGTPYWMAPEVILAMDEGQYDGKVD  196 (307)
T ss_pred             -CccCCccccCceeeeccCCCCCCcccc
Confidence             23466666    22   2455677776

Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily

>cd07841 STKc_CDK7 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

Probab=99.78  E-value=3.8e-18  Score=143.62  Aligned_cols=150  Identities=21%  Similarity=0.281  Sum_probs=113.7

Q ss_pred             CCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccChh-----HHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEE
Q 047066          105 NYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVYQS-----QIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLV  178 (256)
Q Consensus       105 ~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~-----~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv  178 (256)
                      +|++.+.||+|++|.||+|... +++.+++|.+......     ....+..|+.+++.++|+||+++++++.+.+..++|
T Consensus         1 ~y~~~~~lg~g~~~~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv   80 (298)
T cd07841           1 RYEKGKKLGEGTYAVVYKARDKETGRIVAIKKIKLGERKEAKDGINFTALREIKLLQELKHPNIIGLLDVFGHKSNINLV   80 (298)
T ss_pred             CceeeeeeeeccccEEEEEEECCCCcEEEEEEEeccccccccchhhHHHHHHHHHHhhcCCCCChhhhheeecCCEEEEE
Confidence            3677889999999999999965 6889999988654321     234567899999999999999999999999999999


Q ss_pred             EecCCCC-----------CCCHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCcee
Q 047066          179 NEFVKLP-----------TISWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQL  234 (256)
Q Consensus       179 ~e~~~~~-----------~l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~  234 (256)
                      |||+ ++           .+++.....++.|++             +||+|+||+++.++.+||+|||+++.........
T Consensus        81 ~e~~-~~~L~~~i~~~~~~~~~~~~~~~~~qi~~al~~lH~~~i~H~dl~p~nill~~~~~~~l~dfg~~~~~~~~~~~~  159 (298)
T cd07841          81 FEFM-ETDLEKVIKDKSIVLTPADIKSYMLMTLRGLEYLHSNWILHRDLKPNNLLIASDGVLKLADFGLARSFGSPNRKM  159 (298)
T ss_pred             Eccc-CCCHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHhCCeeecCCChhhEEEcCCCCEEEccceeeeeccCCCccc
Confidence            9999 43           355666666666655             5999999999999999999999998765432211


Q ss_pred             eeeeeecccc----cc-cccCCCCCCC
Q 047066          235 STMVQGTLGY----YL-HTSQGTLNKE  256 (256)
Q Consensus       235 ~~~~~Gt~~y----~~-~~~~~t~ksD  256 (256)
                       ....+++.|    .+ ....++.++|
T Consensus       160 -~~~~~~~~y~aPE~~~~~~~~~~~~D  185 (298)
T cd07841         160 -THQVVTRWYRAPELLFGARHYGVGVD  185 (298)
T ss_pred             -cccccceeeeCHHHHhCCCCCCcHHH
Confidence             222355666    22 2234555555

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is

>cd08223 STKc_Nek4 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4

Probab=99.78  E-value=6.6e-18  Score=138.96  Aligned_cols=151  Identities=22%  Similarity=0.328  Sum_probs=115.7

Q ss_pred             CCcccceeeeeCceEEEEEEEC-CCcEEEEEEeccc--ChhHHHHHHHHHHHHHhCCCCcccceeeEEEE-CCEEEEEEe
Q 047066          105 NYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIV--YQSQIEQCINKVVVLSQINHRNVVGLLGCCLE-TEVPLLVNE  180 (256)
Q Consensus       105 ~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~-~~~~~lv~e  180 (256)
                      +|++.+.||+|++|.||++..+ +++.+++|.+...  .....+.+.+|+.+++.++|+|++++.+.+.. .+..++++|
T Consensus         1 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~lv~e   80 (257)
T cd08223           1 AYCFVRVVGKGSYGEVSLVRHRTDGKQYVIKKLNLRNASRRERKAAEQEAQLLSQLKHPNIVAYRESWEGEDGLLYIVMG   80 (257)
T ss_pred             CceEEEEecCCCCeEEEEEEEcCCCcEEEEEEEehhhcCHHHHHHHHHHHHHHHhCCCCCeeeeeeeecCCCCEEEEEec
Confidence            4788899999999999999865 5788999987543  23445678899999999999999999998764 456899999


Q ss_pred             cCCCCCC------------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceee
Q 047066          181 FVKLPTI------------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLS  235 (256)
Q Consensus       181 ~~~~~~l------------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~  235 (256)
                      |++++++            ++.....++.+++             +||+|+||+++.++.++|+|||++..+..... ..
T Consensus        81 ~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~l~~~l~~lH~~~i~H~di~p~nil~~~~~~~~l~df~~~~~~~~~~~-~~  159 (257)
T cd08223          81 FCEGGDLYHKLKEQKGKLLPENQVVEWFVQIAMALQYLHEKHILHRDLKTQNVFLTRTNIIKVGDLGIARVLENQCD-MA  159 (257)
T ss_pred             ccCCCcHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCCchhEEEecCCcEEEecccceEEecccCC-cc
Confidence            9987654            4444455555543             69999999999999999999999987644322 22


Q ss_pred             eeeeecccc----cccccCCCCCCC
Q 047066          236 TMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       236 ~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      ....|++.|    ...++.++.++|
T Consensus       160 ~~~~~~~~y~aPE~~~~~~~~~~~D  184 (257)
T cd08223         160 STLIGTPYYMSPELFSNKPYNYKSD  184 (257)
T ss_pred             ccccCCcCccChhHhcCCCCCchhh
Confidence            334578888    455566677776

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown.

>cd07836 STKc_Pho85 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85

Probab=99.78  E-value=3.4e-18  Score=142.79  Aligned_cols=139  Identities=21%  Similarity=0.319  Sum_probs=109.5

Q ss_pred             CCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC-hhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEecC
Q 047066          105 NYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY-QSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEFV  182 (256)
Q Consensus       105 ~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~  182 (256)
                      +|+..+.||.|++|.||+|... ++..+++|.+.... ......+.+|+.+++.++|||++++++++...+..++++||+
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~   80 (284)
T cd07836           1 NFKQLEKLGEGTYATVYKGRNRTTGEIVALKEIHLDAEEGTPSTAIREISLMKELKHENIVRLHDVIHTENKLMLVFEYM   80 (284)
T ss_pred             CceEeeeeccCCceEEEEEEECCCCeEEEEEEecccccccchHHHHHHHHHHHhhcCCCEeeeeeeEeeCCcEEEEEecC
Confidence            4788899999999999999975 68899999886543 233456788999999999999999999999999999999999


Q ss_pred             CCC------------CCCHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceeeee
Q 047066          183 KLP------------TISWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTM  237 (256)
Q Consensus       183 ~~~------------~l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~~  237 (256)
                      ++.            .+++.....++.+++             +||+|+||++++++.+||+|||+++........ ...
T Consensus        81 ~~~l~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~h~dl~p~ni~~~~~~~~~l~d~g~~~~~~~~~~~-~~~  159 (284)
T cd07836          81 DKDLKKYMDTHGVRGALDPNTVKSFTYQLLKGIAFCHENRVLHRDLKPQNLLINKRGELKLADFGLARAFGIPVNT-FSN  159 (284)
T ss_pred             CccHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHHHHCCeeeCCCCHHHEEECCCCcEEEeecchhhhhcCCccc-ccc
Confidence            752            245555556666655             599999999999999999999999865432221 122


Q ss_pred             eeecccc
Q 047066          238 VQGTLGY  244 (256)
Q Consensus       238 ~~Gt~~y  244 (256)
                      ..+|+.|
T Consensus       160 ~~~~~~y  166 (284)
T cd07836         160 EVVTLWY  166 (284)
T ss_pred             ccccccc
Confidence            3466666

Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment.

>cd06657 STKc_PAK4 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4

Probab=99.78  E-value=3.7e-18  Score=143.66  Aligned_cols=146  Identities=25%  Similarity=0.316  Sum_probs=115.7

Q ss_pred             ceeeeeCceEEEEEEEC-CCcEEEEEEecccChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEecCCCCCC-
Q 047066          110 RMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEFVKLPTI-  187 (256)
Q Consensus       110 ~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~~~~l-  187 (256)
                      ..||+|+||.||++..+ ++..+++|.+..........+.+|+.+++.++|+|++++++.+...+..+++|||+++++| 
T Consensus        26 ~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~  105 (292)
T cd06657          26 IKIGEGSTGIVCIATVKSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFLEGGALT  105 (292)
T ss_pred             HHcCCCCCeEEEEEEEcCCCeEEEEEEecccchhHHHHHHHHHHHHHhcCCcchhheeeEEEeCCEEEEEEecCCCCcHH
Confidence            57999999999999874 6889999988655555557789999999999999999999999999999999999988765 


Q ss_pred             --------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceeeeeeeecccc--
Q 047066          188 --------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTLGY--  244 (256)
Q Consensus       188 --------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~~~~Gt~~y--  244 (256)
                              ++.....++.+++             +||+|+||++++++.++|+|||++......... .....|++.|  
T Consensus       106 ~~~~~~~~~~~~~~~~~~ql~~~l~~lH~~givH~dl~p~Nilv~~~~~~~l~dfg~~~~~~~~~~~-~~~~~~~~~y~~  184 (292)
T cd06657         106 DIVTHTRMNEEQIAAVCLAVLKALSVLHAQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPR-RKSLVGTPYWMA  184 (292)
T ss_pred             HHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEECCCCCEEEcccccceeccccccc-ccccccCccccC
Confidence                    3444444444443             699999999999999999999998876433221 2334578888  


Q ss_pred             --cccccCCCCCCC
Q 047066          245 --YLHTSQGTLNKE  256 (256)
Q Consensus       245 --~~~~~~~t~ksD  256 (256)
                        ...+..++.++|
T Consensus       185 pE~~~~~~~~~~~D  198 (292)
T cd06657         185 PELISRLPYGPEVD  198 (292)
T ss_pred             HHHhcCCCCCchhh
Confidence              445566777776

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell mo

>cd05057 PTKc_EGFR_like Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases

Probab=99.78  E-value=3.9e-18  Score=142.26  Aligned_cols=153  Identities=22%  Similarity=0.384  Sum_probs=114.0

Q ss_pred             cCCCcccceeeeeCceEEEEEEEC-CC----cEEEEEEecccC-hhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEE
Q 047066          103 TNNYAYDRMIGRGGYGTVFLGSLS-DN----KAIAIKKSRIVY-QSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPL  176 (256)
Q Consensus       103 ~~~~~~~~~lg~G~~g~V~~~~~~-~~----~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~  176 (256)
                      ..+|++.+.||+|+||.||+|..+ ++    ..+++|...... ......+.+|+.+++.++|||++++++++.. ...+
T Consensus         6 ~~~~~~~~~ig~g~~g~v~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-~~~~   84 (279)
T cd05057           6 ETELEKIKVLGSGAFGTVYKGVWIPEGEKVKIPVAIKVLREETSPKANKEILDEAYVMASVDHPHVVRLLGICLS-SQVQ   84 (279)
T ss_pred             HHHcEEcceecCCCCccEEEEEEecCCCCcceEEEEEeccCCCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEec-CceE
Confidence            356788899999999999999864 23    258888776543 3445678999999999999999999999987 7889


Q ss_pred             EEEecCCCCCC-----------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCc
Q 047066          177 LVNEFVKLPTI-----------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDET  232 (256)
Q Consensus       177 lv~e~~~~~~l-----------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~  232 (256)
                      +++||+++++|           ++...+.++.|++             +||+|+||+++.++.+||+|||+++.+.....
T Consensus        85 ~v~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~i~H~di~p~nil~~~~~~~kL~dfg~~~~~~~~~~  164 (279)
T cd05057          85 LITQLMPLGCLLDYVRNHKDNIGSQYLLNWCVQIAKGMSYLEEKRLVHRDLAARNVLVKTPQHVKITDFGLAKLLDVDEK  164 (279)
T ss_pred             EEEecCCCCcHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhCCEEecccCcceEEEcCCCeEEECCCcccccccCccc
Confidence            99999987654           4555566666655             59999999999999999999999987654332


Q ss_pred             eeee-eeeecccc----cccccCCCCCCC
Q 047066          233 QLST-MVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       233 ~~~~-~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      .... ...+++.|    ....+.++.++|
T Consensus       165 ~~~~~~~~~~~~y~~PE~~~~~~~~~~~D  193 (279)
T cd05057         165 EYHAEGGKVPIKWMALESILHRIYTHKSD  193 (279)
T ss_pred             ceecCCCcccccccCHHHhhcCCcCchhh
Confidence            2111 11123445    344455666665

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instea

>cd06653 STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=99.77  E-value=8.3e-18  Score=139.19  Aligned_cols=153  Identities=23%  Similarity=0.331  Sum_probs=115.4

Q ss_pred             CCCcccceeeeeCceEEEEEEEC-CCcEEEEEEeccc-----ChhHHHHHHHHHHHHHhCCCCcccceeeEEEEC--CEE
Q 047066          104 NNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIV-----YQSQIEQCINKVVVLSQINHRNVVGLLGCCLET--EVP  175 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~-----~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~--~~~  175 (256)
                      .+|++.+.||+|+||.||++... ++..+++|.+...     .......+.+|+.+++.++||||+++++++...  ...
T Consensus         2 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~~~~~~   81 (264)
T cd06653           2 VNWRLGKLLGRGAFGEVYLCYDADTGRELAVKQVPFDPDSQETSKEVNALECEIQLLKNLRHDRIVQYYGCLRDPEEKKL   81 (264)
T ss_pred             CceeeeeeEccCCCeEEEEEEEcCCCCEEEEEEEecCcccchhhHHHHHHHHHHHHHHHcCCCCcceEEEEEEcCCCCEE
Confidence            47889999999999999999864 6889999986432     133446788999999999999999999998763  568


Q ss_pred             EEEEecCCCCCC----------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCc
Q 047066          176 LLVNEFVKLPTI----------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDET  232 (256)
Q Consensus       176 ~lv~e~~~~~~l----------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~  232 (256)
                      ++++||+++++|          ++.....++.+++             +||+|+||+++.++.++|+|||+++.......
T Consensus        82 ~~v~e~~~~~~L~~~~~~~~~l~~~~~~~~~~~i~~al~~LH~~~i~H~dl~p~ni~i~~~~~~~l~dfg~~~~~~~~~~  161 (264)
T cd06653          82 SIFVEYMPGGSIKDQLKAYGALTENVTRRYTRQILQGVSYLHSNMIVHRDIKGANILRDSAGNVKLGDFGASKRIQTICM  161 (264)
T ss_pred             EEEEEeCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHEEEcCCCCEEECccccccccccccc
Confidence            899999987654          3344445555544             59999999999999999999999987542111


Q ss_pred             --eeeeeeeecccc----cccccCCCCCCC
Q 047066          233 --QLSTMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       233 --~~~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                        ...+...|++.|    .+.+..++.++|
T Consensus       162 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~D  191 (264)
T cd06653         162 SGTGIKSVTGTPYWMSPEVISGEGYGRKAD  191 (264)
T ss_pred             cCccccccCCcccccCHhhhcCCCCCcccc
Confidence              111234577778    444556777776

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain, functionally uncharacterized subgroup 1. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MEKK3-like subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phospho

>cd07843 STKc_CDC2L1 Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1

Probab=99.77  E-value=3.6e-18  Score=143.47  Aligned_cols=152  Identities=20%  Similarity=0.289  Sum_probs=115.6

Q ss_pred             CCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC--hhHHHHHHHHHHHHHhCCCCcccceeeEEEEC--CEEEEE
Q 047066          104 NNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY--QSQIEQCINKVVVLSQINHRNVVGLLGCCLET--EVPLLV  178 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~--~~~~lv  178 (256)
                      ++|+..+.||+|+||.||+|..+ +++.+++|.++...  ......+.+|+.++++++||||+++.+++...  +..+++
T Consensus         5 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~~~lv   84 (293)
T cd07843           5 DEYEKLNRIEEGTYGVVYRARDKKTGEIVALKKLKMEKEKEGFPITSLREINILLKLQHPNIVTVKEVVVGSNLDKIYMV   84 (293)
T ss_pred             hhhhhhhhhcCCCCeEEEEEEECCCCcEEEEEEEeeccccccchhhHHHHHHHHHhcCCCCEEEEEEEEEecCCCcEEEE
Confidence            46888899999999999999976 58899999886443  22234567899999999999999999999887  889999


Q ss_pred             EecCCC----------CCCCHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceee
Q 047066          179 NEFVKL----------PTISWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLS  235 (256)
Q Consensus       179 ~e~~~~----------~~l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~  235 (256)
                      +||+++          ..+++.....++.|++             +||+|+||++++++.+||+|||+++........ .
T Consensus        85 ~e~~~~~L~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~i~H~dl~p~nili~~~~~~~l~d~g~~~~~~~~~~~-~  163 (293)
T cd07843          85 MEYVEHDLKSLMETMKQPFLQSEVKCLMLQLLSGVAHLHDNWILHRDLKTSNLLLNNRGILKICDFGLAREYGSPLKP-Y  163 (293)
T ss_pred             ehhcCcCHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCeeeccCCHHHEEECCCCcEEEeecCceeeccCCccc-c
Confidence            999975          2245666666666665             599999999999999999999999877544222 1


Q ss_pred             eeeeecccc----ccc-ccCCCCCCC
Q 047066          236 TMVQGTLGY----YLH-TSQGTLNKE  256 (256)
Q Consensus       236 ~~~~Gt~~y----~~~-~~~~t~ksD  256 (256)
                      ....+++.|    .+. ...++.++|
T Consensus       164 ~~~~~~~~~~aPE~~~~~~~~~~~~D  189 (293)
T cd07843         164 TQLVVTLWYRAPELLLGAKEYSTAID  189 (293)
T ss_pred             ccccccccccCchhhcCCccccchhh
Confidence            223466666    222 233566665

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the

>cd07860 STKc_CDK2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3

Probab=99.77  E-value=2.4e-18  Score=143.79  Aligned_cols=139  Identities=26%  Similarity=0.362  Sum_probs=108.5

Q ss_pred             CCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC--hhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEec
Q 047066          105 NYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY--QSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEF  181 (256)
Q Consensus       105 ~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~  181 (256)
                      +|+..+.||+|++|.||+|... ++..+++|.+....  ......+.+|++++++++||||+++++++...+..+++|||
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~   80 (284)
T cd07860           1 NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFEF   80 (284)
T ss_pred             CceeeeeecCCCceEEEEEEECCCCCEEEEEEccccccccccchHHHHHHHHHHhcCCCCCcchhhhcccCCcEEEEeec
Confidence            4778899999999999999875 68899999876432  22335788999999999999999999999999999999999


Q ss_pred             CCC-----------CCCCHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceeeee
Q 047066          182 VKL-----------PTISWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTM  237 (256)
Q Consensus       182 ~~~-----------~~l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~~  237 (256)
                      +.+           +.+++.....++.+++             +||+|+||+++.++.+||+|||+++........ ...
T Consensus        81 ~~~~l~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~i~H~~l~p~nill~~~~~~~l~dfg~~~~~~~~~~~-~~~  159 (284)
T cd07860          81 LHQDLKKFMDASPLSGIPLPLIKSYLFQLLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRT-YTH  159 (284)
T ss_pred             cccCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEECCCCCEEEeeccchhhcccCccc-ccc
Confidence            854           3355666666666654             699999999999999999999999866433221 122


Q ss_pred             eeecccc
Q 047066          238 VQGTLGY  244 (256)
Q Consensus       238 ~~Gt~~y  244 (256)
                      ..+++.|
T Consensus       160 ~~~~~~y  166 (284)
T cd07860         160 EVVTLWY  166 (284)
T ss_pred             ccccccc
Confidence            2355666

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex

>cd06610 STKc_OSR1_SPAK Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase

Probab=99.77  E-value=9.1e-18  Score=138.72  Aligned_cols=153  Identities=23%  Similarity=0.320  Sum_probs=118.0

Q ss_pred             CCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC-hhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEec
Q 047066          104 NNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY-QSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEF  181 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~  181 (256)
                      ++|++.+.||+|+||+||+|... ++..+++|.+.... ......+.+|+..++.++|+|++++++.+...+..++++|+
T Consensus         1 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~iv~e~   80 (267)
T cd06610           1 DDYELIEVIGVGATAVVYAAICLPNNEKVAIKRIDLEKCQTSVDELRKEVQAMSQCNHPNVVKYYTSFVVGDELWLVMPY   80 (267)
T ss_pred             CcceeeeeecCCCCeEEEEEEEcCCCcEEEEEEeccCCcchHHHHHHHHHHHHHhcCCCCEEEEEEEEeeCCEEEEEEec
Confidence            46888999999999999999964 67889999876433 33557889999999999999999999999999999999999


Q ss_pred             CCCCCCC-------------HHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCce--
Q 047066          182 VKLPTIS-------------WEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQ--  233 (256)
Q Consensus       182 ~~~~~l~-------------~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~--  233 (256)
                      ++++++.             +.....++.+++             +||+|+||++++++.+||+|||++..+......  
T Consensus        81 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ql~~al~~lh~~~i~h~~l~p~ni~~~~~~~~~l~df~~~~~~~~~~~~~~  160 (267)
T cd06610          81 LSGGSLLDIMKSSYPRGGLDEAIIATVLKEVLKGLEYLHSNGQIHRDIKAGNILLGEDGSVKIADFGVSASLADGGDRTR  160 (267)
T ss_pred             cCCCcHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHhEEEcCCCCEEEcccchHHHhccCccccc
Confidence            9886643             333333444433             699999999999999999999999876543322  


Q ss_pred             -eeeeeeecccc----ccccc-CCCCCCC
Q 047066          234 -LSTMVQGTLGY----YLHTS-QGTLNKE  256 (256)
Q Consensus       234 -~~~~~~Gt~~y----~~~~~-~~t~ksD  256 (256)
                       ......|++.|    .+... .++.++|
T Consensus       161 ~~~~~~~~~~~y~~Pe~~~~~~~~~~~~D  189 (267)
T cd06610         161 KVRKTFVGTPCWMAPEVMEQVHGYDFKAD  189 (267)
T ss_pred             cccccccCChhhcChHHHccccCcCcccc
Confidence             12234578877    33333 5777776

Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1

>cd07849 STKc_ERK1_2_like Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases

Probab=99.77  E-value=3.6e-18  Score=146.48  Aligned_cols=154  Identities=23%  Similarity=0.346  Sum_probs=115.6

Q ss_pred             cCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC-hhHHHHHHHHHHHHHhCCCCcccceeeEEEEC-----CEE
Q 047066          103 TNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY-QSQIEQCINKVVVLSQINHRNVVGLLGCCLET-----EVP  175 (256)
Q Consensus       103 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~-----~~~  175 (256)
                      .++|++.+.||+|+||.||+|... +++.||+|.+.... ......+.+|+.+++.++||||+++++++...     ...
T Consensus         4 ~~~y~i~~~lg~G~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~   83 (336)
T cd07849           4 GPRYQNLSYIGEGAYGMVCSATHKPTGVKVAIKKISPFEHQTFCQRTLREIKILRRFKHENIIGILDIIRPPSFESFNDV   83 (336)
T ss_pred             ccceEEEEEEEecCCeEEEEEEEcCCCCeEEEEEecccccchhHHHHHHHHHHHHhCCCCCcCchhheeecccccccceE
Confidence            367999999999999999999864 68899999886433 33446788999999999999999999987643     357


Q ss_pred             EEEEecCCC--------CCCCHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCcee
Q 047066          176 LLVNEFVKL--------PTISWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQL  234 (256)
Q Consensus       176 ~lv~e~~~~--------~~l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~  234 (256)
                      ++++||+.+        +.+++.....++.|++             +||||+||+++.++.+||+|||+++.........
T Consensus        84 ~lv~e~~~~~l~~~~~~~~l~~~~~~~i~~ql~~aL~~LH~~~ivH~dlkp~Nill~~~~~~kl~dfg~~~~~~~~~~~~  163 (336)
T cd07849          84 YIVQELMETDLYKLIKTQHLSNDHIQYFLYQILRGLKYIHSANVLHRDLKPSNLLLNTNCDLKICDFGLARIADPEHDHT  163 (336)
T ss_pred             EEEehhcccCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHHHEEECCCCCEEECcccceeecccccccc
Confidence            999999975        3355555555555544             6999999999999999999999998764332211


Q ss_pred             --eeeeeecccc----c-ccccCCCCCCC
Q 047066          235 --STMVQGTLGY----Y-LHTSQGTLNKE  256 (256)
Q Consensus       235 --~~~~~Gt~~y----~-~~~~~~t~ksD  256 (256)
                        .....||+.|    . .....++.++|
T Consensus       164 ~~~~~~~~~~~y~aPE~~~~~~~~~~~~D  192 (336)
T cd07849         164 GFLTEYVATRWYRAPEIMLNSKGYTKAID  192 (336)
T ss_pred             CCcCCcCcCCCccChHHhhCCCCCCcHHH
Confidence              1223578878    2 23345677766

Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase

>cd08528 STKc_Nek10 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10

Probab=99.77  E-value=5e-18  Score=140.76  Aligned_cols=150  Identities=21%  Similarity=0.339  Sum_probs=113.4

Q ss_pred             CCcccceeeeeCceEEEEEEECC--CcEEEEEEeccc----------ChhHHHHHHHHHHHHHh-CCCCcccceeeEEEE
Q 047066          105 NYAYDRMIGRGGYGTVFLGSLSD--NKAIAIKKSRIV----------YQSQIEQCINKVVVLSQ-INHRNVVGLLGCCLE  171 (256)
Q Consensus       105 ~~~~~~~lg~G~~g~V~~~~~~~--~~~vavK~~~~~----------~~~~~~~~~~E~~~l~~-l~h~niv~l~~~~~~  171 (256)
                      +|++.+.||+|+||.||++....  +..+++|.+...          ......++..|+.++.+ ++|||++++++++..
T Consensus         1 ~y~~~~~ig~G~~~~v~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~   80 (269)
T cd08528           1 EYAVLEHLGSGAFGCVYKVRKKNNGQNLLALKEINVHNPAFGKDKRERDKSIGDIVSEVTIIKEQLRHPNIVRYYKTFLE   80 (269)
T ss_pred             CchhhhhhcCCCCceEEEEEEcCCCCceeeeeEeeccccccccccccchHHHHHHHHHHHHHhhcCCCCCeeeEEeeEcc
Confidence            47788899999999999999754  678999976432          22334567889888875 699999999999999


Q ss_pred             CCEEEEEEecCCCCCCC--------------HHHHHHHHHHHH--------------hccCCCcEEEcCCCcEEEEecCC
Q 047066          172 TEVPLLVNEFVKLPTIS--------------WEVRIRIAAETA--------------EDIKSINILLDDNYTTKVCDFGA  223 (256)
Q Consensus       172 ~~~~~lv~e~~~~~~l~--------------~~~~~~~~~~i~--------------rdlk~~NiLi~~~~~~ki~DFGl  223 (256)
                      .+..+++|||+++++|.              +.....++.+++              +||+|+||+++.++.+||+|||+
T Consensus        81 ~~~~~lv~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~~i~H~dl~~~nil~~~~~~~~l~dfg~  160 (269)
T cd08528          81 NDRLYIVMDLIEGAPLGEHFNSLKEKKQRFTEERIWNIFVQMVLALRYLHKEKRIVHRDLTPNNIMLGEDDKVTITDFGL  160 (269)
T ss_pred             CCeEEEEEecCCCCcHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhccCCceeecCCCHHHEEECCCCcEEEecccc
Confidence            99999999999886653              233333443333              69999999999999999999999


Q ss_pred             ceecCCCCceeeeeeeecccc----cccccCCCCCCC
Q 047066          224 SKLVPIDETQLSTMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       224 a~~~~~~~~~~~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      +.......  ......|+..|    ...++.++.++|
T Consensus       161 ~~~~~~~~--~~~~~~~~~~~~~Pe~~~~~~~~~~~D  195 (269)
T cd08528         161 AKQKQPES--KLTSVVGTILYSCPEIVKNEPYGEKAD  195 (269)
T ss_pred             eeeccccc--ccccccCcccCcChhhhcCCCCchHHH
Confidence            98765433  22334577777    445566677766

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24.

>PTZ00266 NIMA-related protein kinase; Provisional

Probab=99.77  E-value=4e-18  Score=160.44  Aligned_cols=154  Identities=25%  Similarity=0.325  Sum_probs=115.1

Q ss_pred             hhcCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEeccc--ChhHHHHHHHHHHHHHhCCCCcccceeeEEEE--CCEE
Q 047066          101 IATNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIV--YQSQIEQCINKVVVLSQINHRNVVGLLGCCLE--TEVP  175 (256)
Q Consensus       101 ~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~--~~~~  175 (256)
                      ....+|++.+.||+|+||.||++... ++..+|+|.+...  .......+..|+.+++.++||||+++++++..  ...+
T Consensus        10 ~~l~~YeIl~kLG~GgFGtVYLAkdk~tg~~vAlKvIk~~~l~e~~~~~~~~EI~IL~~L~HPNIVrl~d~f~de~~~~l   89 (1021)
T PTZ00266         10 SRLNEYEVIKKIGNGRFGEVFLVKHKRTQEFFCWKAISYRGLKEREKSQLVIEVNVMRELKHKNIVRYIDRFLNKANQKL   89 (1021)
T ss_pred             cccCCEEEEEEEecCCCeEEEEEEECCCCeEEEEEEEeccccCHHHHHHHHHHHHHHHHcCCCCcCeEEEEEEecCCCEE
Confidence            34568999999999999999999975 5778899987543  34455778999999999999999999998865  4578


Q ss_pred             EEEEecCCCCCCC--------------HHHHHHHHH--------------------HHHhccCCCcEEEcC---------
Q 047066          176 LLVNEFVKLPTIS--------------WEVRIRIAA--------------------ETAEDIKSINILLDD---------  212 (256)
Q Consensus       176 ~lv~e~~~~~~l~--------------~~~~~~~~~--------------------~i~rdlk~~NiLi~~---------  212 (256)
                      ++||||+++++|.              +...+.++.                    .+|+||||+|||++.         
T Consensus        90 yIVMEY~~gGSL~~lL~k~~~~~g~L~E~~Il~Ia~QIL~ALaYLHs~g~~~~~k~IVHRDLKPeNILL~s~~~~lg~i~  169 (1021)
T PTZ00266         90 YILMEFCDAGDLSRNIQKCYKMFGKIEEHAIVDITRQLLHALAYCHNLKDGPNGERVLHRDLKPQNIFLSTGIRHIGKIT  169 (1021)
T ss_pred             EEEEeCCCCCcHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhcccccccCCceeccCcHHHeEeecCcccccccc
Confidence            9999999987653              222222222                    366899999999964         


Q ss_pred             --------CCcEEEEecCCceecCCCCceeeeeeeecccc----ccc--ccCCCCCCC
Q 047066          213 --------NYTTKVCDFGASKLVPIDETQLSTMVQGTLGY----YLH--TSQGTLNKE  256 (256)
Q Consensus       213 --------~~~~ki~DFGla~~~~~~~~~~~~~~~Gt~~y----~~~--~~~~t~ksD  256 (256)
                              ...+||+|||+++.+.....  .....||+.|    .+.  ...+++++|
T Consensus       170 ~~~~n~ng~~iVKLsDFGlAr~l~~~s~--~~s~vGTp~YmAPEvL~ge~~~~s~KSD  225 (1021)
T PTZ00266        170 AQANNLNGRPIAKIGDFGLSKNIGIESM--AHSCVGTPYYWSPELLLHETKSYDDKSD  225 (1021)
T ss_pred             ccccccCCCCceEEccCCcccccccccc--ccccCCCccccCHHHHhccCCCCCchhH
Confidence                    23589999999987643322  2334699999    332  345778877

>cd05040 PTKc_Ack_like Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase

Probab=99.77  E-value=4.7e-18  Score=139.94  Aligned_cols=146  Identities=21%  Similarity=0.374  Sum_probs=111.0

Q ss_pred             ceeeeeCceEEEEEEECC--C--cEEEEEEecccCh-hHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEecCCC
Q 047066          110 RMIGRGGYGTVFLGSLSD--N--KAIAIKKSRIVYQ-SQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEFVKL  184 (256)
Q Consensus       110 ~~lg~G~~g~V~~~~~~~--~--~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~~  184 (256)
                      +.||+|++|.||++.+.+  +  ..+|+|.+..... ...+.+.+|+..+++++||||+++++.+.. ...++++||+++
T Consensus         1 ~~ig~g~~~~v~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~-~~~~~v~e~~~~   79 (257)
T cd05040           1 KKLGDGSFGVVRRGEWSTSGGKVIPVAVKCLKSDKLSDIMDDFLKEAAIMHSLDHENLIRLYGVVLT-HPLMMVTELAPL   79 (257)
T ss_pred             CcCCccCcccEEeeeEecCCCCceEEEEeecCCcccHHHHHHHHHHHHHHhhcCCCCccceeEEEcC-CeEEEEEEecCC
Confidence            368999999999998643  2  3689998876554 556789999999999999999999999988 889999999987


Q ss_pred             CCC------------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceee--ee
Q 047066          185 PTI------------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLS--TM  237 (256)
Q Consensus       185 ~~l------------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~--~~  237 (256)
                      ++|            ++.....++.|++             +||+|+||+++.++.+||+|||+++.+........  ..
T Consensus        80 ~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~L~~lH~~~i~H~di~p~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~  159 (257)
T cd05040          80 GSLLDRLRKDALGHFLISTLCDYAVQIANGMRYLESKRFIHRDLAARNILLASDDKVKIGDFGLMRALPQNEDHYVMEEH  159 (257)
T ss_pred             CcHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHhCCccccccCcccEEEecCCEEEeccccccccccccccceecccC
Confidence            654            3334444444444             69999999999999999999999988754322211  12


Q ss_pred             eeecccc----cccccCCCCCCC
Q 047066          238 VQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       238 ~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      ..++..|    ++.+..++.++|
T Consensus       160 ~~~~~~y~~pE~~~~~~~~~~~D  182 (257)
T cd05040         160 LKVPFAWCAPESLRTRTFSHASD  182 (257)
T ss_pred             CCCCceecCHHHhcccCcCchhh
Confidence            3466667    455566777776

Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with and

>cd05574 STKc_phototropin_like Catalytic domain of Phototropin-like Protein Serine/Threonine Kinases

Probab=99.77  E-value=6.5e-18  Score=143.51  Aligned_cols=125  Identities=25%  Similarity=0.314  Sum_probs=103.1

Q ss_pred             CCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccCh---hHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEE
Q 047066          104 NNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVYQ---SQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVN  179 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~---~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~  179 (256)
                      ++|+..+.||+|++|.||+|... ++..+|+|.+.....   ...+.+..|+++++.++||||+++++.+...+..+++|
T Consensus         1 ~~y~~~~~ig~g~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~   80 (316)
T cd05574           1 KHFKKIKLLGKGDVGRVFLVRLKGTGKLFALKVLDKKEMIKRNKVKRVLTEQEILATLDHPFLPTLYASFQTETYLCLVM   80 (316)
T ss_pred             CceEEeeeecCCccEEEEEEEEcCCCcEEEEEEEeccccchHHHHHHHHHHHHHHHhCCCCCchhheeeeecCCEEEEEE
Confidence            36888899999999999999975 588999998865432   24467889999999999999999999999999999999


Q ss_pred             ecCCCCCC------------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecC
Q 047066          180 EFVKLPTI------------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVP  228 (256)
Q Consensus       180 e~~~~~~l------------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~  228 (256)
                      ||+.+++|            ++.....++.|++             +||||+||+++.++.++|+|||++....
T Consensus        81 e~~~~~~L~~~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~  154 (316)
T cd05574          81 DYCPGGELFRLLQRQPGKCLSEEVARFYAAEVLLALEYLHLLGIVYRDLKPENILLHESGHIMLSDFDLSKQSD  154 (316)
T ss_pred             EecCCCCHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHHHHCCeeccCCChHHeEEcCCCCEEEeecchhhccc
Confidence            99988665            3333344444444             6999999999999999999999987653

Serine/Threonine Kinases (STKs), Phototropin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The phototropin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Included in this subfamily are plant phototropins and predominantly uncharacterized fungal STKs whose catalytic domains resemble the phototropin kinase domain. One protein from Neurospora crassa is called nrc-2. Phototropins are blue-light receptors that control responses such as phototropism, stromatal opening, and chloroplast movement in order to optimize the photosynthetic efficiency of plants. They are light-activated STKs that contain an N-termin

>cd05578 STKc_Yank1 Catalytic domain of the Protein Serine/Threonine Kinase, Yank1

Probab=99.77  E-value=3.5e-18  Score=140.87  Aligned_cols=150  Identities=26%  Similarity=0.329  Sum_probs=117.2

Q ss_pred             CCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC---hhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEe
Q 047066          105 NYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY---QSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNE  180 (256)
Q Consensus       105 ~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e  180 (256)
                      +|++.+.||.|+||.||++... ++..+++|.+....   ....+.+.+|++.+++++||||+++++.+...+..++++|
T Consensus         1 ~y~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   80 (258)
T cd05578           1 HFELLRVIGKGAFGKVCIVQKRDTKKMFAMKYMNKQKCVEKGSVRNVLNERRILQELNHPFLVNLWYSFQDEENMYLVVD   80 (258)
T ss_pred             CceEEEEeccCCCceEEEEEEccCCcEEEEEEEehhhhcchhHHHHHHHHHHHHHhCCCCChHHHHHhhcCCCeEEEEEe
Confidence            4788899999999999999975 58899999876432   2445788999999999999999999999999999999999


Q ss_pred             cCCCCCC----------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceeeee
Q 047066          181 FVKLPTI----------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTM  237 (256)
Q Consensus       181 ~~~~~~l----------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~~  237 (256)
                      |+.+++|          +......++.+++             +||+|+||++++++.++|+|||++........  ...
T Consensus        81 ~~~~~~L~~~l~~~~~l~~~~~~~~~~~i~~~l~~lh~~~i~h~dl~~~nil~~~~~~~~l~d~~~~~~~~~~~~--~~~  158 (258)
T cd05578          81 LLLGGDLRYHLSQKVKFSEEQVKFWICEIVLALEYLHSKGIIHRDIKPDNILLDEQGHVHITDFNIATKVTPDTL--TTS  158 (258)
T ss_pred             CCCCCCHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHHHeEEcCCCCEEEeecccccccCCCcc--ccc
Confidence            9988654          3444444555544             59999999999999999999999987654321  223


Q ss_pred             eeecccc----cccccCCCCCCC
Q 047066          238 VQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       238 ~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      ..|+..|    ...+..++.++|
T Consensus       159 ~~~~~~y~~PE~~~~~~~~~~~D  181 (258)
T cd05578         159 TSGTPGYMAPEVLCRQGYSVAVD  181 (258)
T ss_pred             cCCChhhcCHHHHcccCCCCccc
Confidence            3467767    444455677776

Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A.

>KOG1006 consensus Mitogen-activated protein kinase (MAPK) kinase MKK4 [Signal transduction mechanisms]

Probab=99.77  E-value=8.9e-20  Score=145.27  Aligned_cols=144  Identities=22%  Similarity=0.260  Sum_probs=108.8

Q ss_pred             HHhhcCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC-hhHHHHHHHHHHHHHhC-CCCcccceeeEEEECCEE
Q 047066           99 LKIATNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY-QSQIEQCINKVVVLSQI-NHRNVVGLLGCCLETEVP  175 (256)
Q Consensus        99 ~~~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~  175 (256)
                      +....++++-+..||.|+||.|++-.++ .|+.+|||+++... ..+..+++.|.+...+- +.||||+++|.+...+..
T Consensus        59 ~~F~~~~Lqdlg~iG~G~fG~V~KM~hk~sg~~mAVKrIr~~n~~keq~rll~e~d~~mks~~cp~IVkfyGa~F~EGdc  138 (361)
T KOG1006|consen   59 HTFTSDNLQDLGEIGNGAFGTVNKMLHKPSGKLMAVKRIRSNNIEKEQKRLLMEHDTVMKSSNCPNIVKFYGALFSEGDC  138 (361)
T ss_pred             cccccchHHHHHHhcCCcchhhhhhhcCccCcEEEEEEeeeccchHHHHHHHHHHHHHHhhcCCcHHHHHhhhhhcCCce
Confidence            3444566777789999999999998865 69999999987554 45667899999876555 799999999999999999


Q ss_pred             EEEEecCCC--------------CCCCH--------------HHHHHHHHHHHhccCCCcEEEcCCCcEEEEecCCceec
Q 047066          176 LLVNEFVKL--------------PTISW--------------EVRIRIAAETAEDIKSINILLDDNYTTKVCDFGASKLV  227 (256)
Q Consensus       176 ~lv~e~~~~--------------~~l~~--------------~~~~~~~~~i~rdlk~~NiLi~~~~~~ki~DFGla~~~  227 (256)
                      |+-||.|+-              ..+++              .....-...||||+||+|||+|..|.+||+|||++-.+
T Consensus       139 WiCMELMd~SlDklYk~vy~vq~~~ipE~Ilg~ItvatV~AL~yLK~~lkiIHRDvKPSNILldr~G~vKLCDFGIcGqL  218 (361)
T KOG1006|consen  139 WICMELMDISLDKLYKRVYSVQKSRIPENILGHITVATVDALDYLKEELKIIHRDVKPSNILLDRHGDVKLCDFGICGQL  218 (361)
T ss_pred             eeeHHHHhhhHHHHHHHHHHHHhccCcHhhhhheeeeehhHHHHHHHHhhhhhccCChhheEEecCCCEeeecccchHhH
Confidence            999999854              11111              11223345688999999999999999999999999876


Q ss_pred             CCCCceeeeeeeecccc
Q 047066          228 PIDETQLSTMVQGTLGY  244 (256)
Q Consensus       228 ~~~~~~~~~~~~Gt~~y  244 (256)
                      .+.  ...+.-.|...|
T Consensus       219 v~S--iAkT~daGCrpY  233 (361)
T KOG1006|consen  219 VDS--IAKTVDAGCRPY  233 (361)
T ss_pred             HHH--HHhhhccCCccc
Confidence            432  122333466666

>cd06639 STKc_myosinIIIB Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin

Probab=99.77  E-value=6.4e-18  Score=141.84  Aligned_cols=149  Identities=24%  Similarity=0.268  Sum_probs=112.1

Q ss_pred             cChHHHHhhcCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccChhHHHHHHHHHHHHHhC-CCCcccceeeEEEE
Q 047066           94 FTAGELKIATNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVYQSQIEQCINKVVVLSQI-NHRNVVGLLGCCLE  171 (256)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~  171 (256)
                      ++..++..+.++|++.+.||+|+||.||++... +++.+++|.+..... ....+.+|+.++.++ +|||++++++++..
T Consensus        12 ~~~~~~~~~~~~y~~~~~l~~g~~~~vy~~~~~~~~~~~aik~~~~~~~-~~~~~~~e~~~l~~l~~h~ni~~~~~~~~~   90 (291)
T cd06639          12 LGLESLGDPTDTWEIIETIGKGTYGKVYKVTNKKDGSLAAVKILDPISD-VDEEIEAEYNILQSLPNHPNVVKFYGMFYK   90 (291)
T ss_pred             hhcccCCCCCCCeEEEEEeecCCCeEEEEEEECCCCCEEEEEEeccccc-HHHHHHHHHHHHHHhcCCCCeEEEEEEEEe
Confidence            334455556788999999999999999999974 688999998764322 235677899999999 89999999999875


Q ss_pred             C-----CEEEEEEecCCCCCC--------------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEE
Q 047066          172 T-----EVPLLVNEFVKLPTI--------------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVC  219 (256)
Q Consensus       172 ~-----~~~~lv~e~~~~~~l--------------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~  219 (256)
                      .     +..++++||+++++|              ++.....++.+++             +||+|+||++++++.+||+
T Consensus        91 ~~~~~~~~~~lv~ey~~~~sL~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~ivH~dlkp~nili~~~~~~kl~  170 (291)
T cd06639          91 ADKLVGGQLWLVLELCNGGSVTELVKGLLICGQRLDEAMISYILYGALLGLQHLHNNRIIHRDVKGNNILLTTEGGVKLV  170 (291)
T ss_pred             ccccCCCeeEEEEEECCCCcHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHHHEEEcCCCCEEEe
Confidence            3     358999999988665              3333344444443             6999999999999999999


Q ss_pred             ecCCceecCCCCceeeeeeeecccc
Q 047066          220 DFGASKLVPIDETQLSTMVQGTLGY  244 (256)
Q Consensus       220 DFGla~~~~~~~~~~~~~~~Gt~~y  244 (256)
                      |||+++.+...... .....|++.|
T Consensus       171 dfg~~~~~~~~~~~-~~~~~~~~~y  194 (291)
T cd06639         171 DFGVSAQLTSTRLR-RNTSVGTPFW  194 (291)
T ss_pred             ecccchhccccccc-ccCccCCccc
Confidence            99999876432221 1223477777

Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also pre

>cd05076 PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=99.77  E-value=3e-18  Score=142.85  Aligned_cols=141  Identities=18%  Similarity=0.230  Sum_probs=103.7

Q ss_pred             eeeeeCceEEEEEEECC-------------------------CcEEEEEEecccChhHHHHHHHHHHHHHhCCCCcccce
Q 047066          111 MIGRGGYGTVFLGSLSD-------------------------NKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGL  165 (256)
Q Consensus       111 ~lg~G~~g~V~~~~~~~-------------------------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l  165 (256)
                      .||+|+||.||+|....                         ...|++|.+..........+.+|+.+++.++||||+++
T Consensus         2 ~lG~G~~~~vy~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~~~~~~~~l~h~niv~~   81 (274)
T cd05076           2 HLGQGTRTNIYDGRLRVEGGGEPEEDEMEDEDPLVEGNNNGRELRVVLKVLDPSHRDIALAFFETASLMSQVSHIHLAFV   81 (274)
T ss_pred             CcCcccccceecceeEeccCCCCcccccccccccccccCCCeeeeEEEEecChHHHHHHHHHHHHHHHHhcCCCCCeeeE
Confidence            58999999999986421                         13578888765544445678899999999999999999


Q ss_pred             eeEEEECCEEEEEEecCCCCCC-----------CHHHHHHHHHHHH-------------hccCCCcEEEcCCC-------
Q 047066          166 LGCCLETEVPLLVNEFVKLPTI-----------SWEVRIRIAAETA-------------EDIKSINILLDDNY-------  214 (256)
Q Consensus       166 ~~~~~~~~~~~lv~e~~~~~~l-----------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~-------  214 (256)
                      ++++...+..++||||+++++|           ++...+.++.|++             +||||+|||++..+       
T Consensus        82 ~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~iiH~dlkp~Nill~~~~~~~~~~~  161 (274)
T cd05076          82 HGVCVRGSENIMVEEFVEHGPLDVCLRKEKGRVPVAWKITVAQQLASALSYLEDKNLVHGNVCAKNILLARLGLAEGTSP  161 (274)
T ss_pred             EEEEEeCCceEEEEecCCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCccCCCCCcccEEEeccCcccCccc
Confidence            9999999999999999998765           3444556666655             69999999997643       


Q ss_pred             cEEEEecCCceecCCCCceeeeeeeecccc----ccc-ccCCCCCCC
Q 047066          215 TTKVCDFGASKLVPIDETQLSTMVQGTLGY----YLH-TSQGTLNKE  256 (256)
Q Consensus       215 ~~ki~DFGla~~~~~~~~~~~~~~~Gt~~y----~~~-~~~~t~ksD  256 (256)
                      .+|++|||++.......     ...+++.|    .+. ...++.++|
T Consensus       162 ~~kl~d~g~~~~~~~~~-----~~~~~~~~~aPe~~~~~~~~~~~~D  203 (274)
T cd05076         162 FIKLSDPGVSFTALSRE-----ERVERIPWIAPECVPGGNSLSTAAD  203 (274)
T ss_pred             eeeecCCcccccccccc-----ccccCCcccCchhhcCCCCCCcHHH
Confidence            48999999986543221     12355556    222 244566665

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalyt

>cd07850 STKc_JNK Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase

Probab=99.77  E-value=6.7e-18  Score=145.80  Aligned_cols=153  Identities=22%  Similarity=0.268  Sum_probs=116.0

Q ss_pred             hcCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEeccc--ChhHHHHHHHHHHHHHhCCCCcccceeeEEEEC------
Q 047066          102 ATNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIV--YQSQIEQCINKVVVLSQINHRNVVGLLGCCLET------  172 (256)
Q Consensus       102 ~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~------  172 (256)
                      ..++|+..+.||+|+||.||++... +++.+|+|.+...  .......+.+|+.+++.++||||+++++++...      
T Consensus        14 ~~~~y~~~~~lg~g~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~   93 (353)
T cd07850          14 VLKRYQNLKPIGSGAQGIVCAAYDTVTGQNVAIKKLSRPFQNVTHAKRAYRELVLMKLVNHKNIIGLLNVFTPQKSLEEF   93 (353)
T ss_pred             hhcceEEEEEeccCCCEEEEEEEECCCCCEEEEEecCccccChhHHHHHHHHHHHHHhcCCCCCcceeeeeccCCCcccc
Confidence            3478999999999999999999965 6889999987542  233446678899999999999999999988643      


Q ss_pred             CEEEEEEecCCCC-------CCCHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCc
Q 047066          173 EVPLLVNEFVKLP-------TISWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDET  232 (256)
Q Consensus       173 ~~~~lv~e~~~~~-------~l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~  232 (256)
                      ...+++|||+.+.       .++......++.|++             +||||+||+++.++.+||+|||+++.......
T Consensus        94 ~~~~lv~e~~~~~l~~~~~~~l~~~~~~~~~~ql~~aL~~LH~~gi~H~dlkp~Nil~~~~~~~kL~Dfg~~~~~~~~~~  173 (353)
T cd07850          94 QDVYLVMELMDANLCQVIQMDLDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFM  173 (353)
T ss_pred             CcEEEEEeccCCCHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhCCeeeCCCCHHHEEECCCCCEEEccCccceeCCCCCC
Confidence            3579999999762       234444444444444             69999999999999999999999987643322


Q ss_pred             eeeeeeeecccc----cccccCCCCCCC
Q 047066          233 QLSTMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       233 ~~~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                        .....||+.|    .+.+..++.++|
T Consensus       174 --~~~~~~~~~y~aPE~~~~~~~~~~~D  199 (353)
T cd07850         174 --MTPYVVTRYYRAPEVILGMGYKENVD  199 (353)
T ss_pred             --CCCCcccccccCHHHHhCCCCCCchh
Confidence              2223477777    455666777776

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK

>cd06629 STKc_MAPKKK_Bck1_like Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases

Probab=99.77  E-value=7.8e-18  Score=139.82  Aligned_cols=152  Identities=22%  Similarity=0.318  Sum_probs=113.3

Q ss_pred             CCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC----------hhHHHHHHHHHHHHHhCCCCcccceeeEEEECC
Q 047066          105 NYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY----------QSQIEQCINKVVVLSQINHRNVVGLLGCCLETE  173 (256)
Q Consensus       105 ~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~----------~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~  173 (256)
                      +|...+.||+|+||.||+|... +++.+|+|.++...          ....+.+..|+.+++.++|||++++++++...+
T Consensus         2 ~~~~~~~lg~g~~~~vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~   81 (272)
T cd06629           2 KWVKGELIGKGTYGRVYLALNVTTGEMMAVKQVELPATIAGRHDSRQKDMVKALRSEIETLKDLDHLNIVQYLGFETTEE   81 (272)
T ss_pred             ceeecceecccCceEEEEEeecCCCceeeeeeeechhhhhcccchHHHHHHHHHHHHHHHHHhcCCCCcceEEEEeccCC
Confidence            3667789999999999999864 68899999765321          112346788999999999999999999999999


Q ss_pred             EEEEEEecCCCCCC----------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCC
Q 047066          174 VPLLVNEFVKLPTI----------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPID  230 (256)
Q Consensus       174 ~~~lv~e~~~~~~l----------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~  230 (256)
                      ..++++||+.+++|          ++.....++.+++             +||+|+||+++.++.++|+|||+++.....
T Consensus        82 ~~~lv~e~~~~~~L~~~l~~~~~l~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~~~nil~~~~~~~~l~d~~~~~~~~~~  161 (272)
T cd06629          82 YLSIFLEYVPGGSIGSCLRTYGRFEEQLVRFFTEQVLEGLAYLHSKGILHRDLKADNLLVDADGICKISDFGISKKSDDI  161 (272)
T ss_pred             ceEEEEecCCCCcHHHHHhhccCCCHHHHHHHHHHHHHHHHHHhhCCeeecCCChhhEEEcCCCeEEEeecccccccccc
Confidence            99999999988664          4444445555554             599999999999999999999999865432


Q ss_pred             Ccee-eeeeeecccc----ccccc--CCCCCCC
Q 047066          231 ETQL-STMVQGTLGY----YLHTS--QGTLNKE  256 (256)
Q Consensus       231 ~~~~-~~~~~Gt~~y----~~~~~--~~t~ksD  256 (256)
                      .... .....|+..|    .....  .++.++|
T Consensus       162 ~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~~D  194 (272)
T cd06629         162 YDNDQNMSMQGSVFWMAPEVIHSYSQGYSAKVD  194 (272)
T ss_pred             ccccccccccCCccccCHHHhccccCCCCccch
Confidence            2111 2234577777    22222  3677776

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell inte

>cd05086 PTKc_Aatyk2 Catalytic domain of the Protein Tyrosine Kinase, Apoptosis-associated tyrosine kinase 2

Probab=99.77  E-value=5.6e-18  Score=140.66  Aligned_cols=134  Identities=23%  Similarity=0.329  Sum_probs=98.8

Q ss_pred             eeeeeCceEEEEEEECCC---cEEEEEEecccC-hhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEecCCCCC
Q 047066          111 MIGRGGYGTVFLGSLSDN---KAIAIKKSRIVY-QSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEFVKLPT  186 (256)
Q Consensus       111 ~lg~G~~g~V~~~~~~~~---~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~~~~  186 (256)
                      .||+|+||.||++...++   ..+++|...... ....+.+.+|+.+++.++||||+++++.+......+++|||+++++
T Consensus         2 ~lg~G~~g~v~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~~~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~   81 (268)
T cd05086           2 EIGNGWFGKVLLSEIYTDTGVARVVVKELKANASSKEQNEFLQQGDPYRILQHPNILQCLGQCVEAIPYLLVFEYCELGD   81 (268)
T ss_pred             cCCCCcCceEEEEEEEcCCCcceEEEEEecCCCChHHHHHHHHHHHHHhccCCcchhheEEEecCCCccEEEEecCCCCc
Confidence            589999999999975433   345666655433 3445789999999999999999999999999999999999999887


Q ss_pred             CCHHH--------------HHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCC-ceeeeee
Q 047066          187 ISWEV--------------RIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDE-TQLSTMV  238 (256)
Q Consensus       187 l~~~~--------------~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~-~~~~~~~  238 (256)
                      |....              ...++.+++             +||||+|||++.++.+||+|||++.....+. .......
T Consensus        82 L~~~l~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~~~i~H~dikp~nil~~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~  161 (268)
T cd05086          82 LKSYLSQEQWHRRNSQLLLLQRMACEIAAGVTHMHKHNFLHSDLALRNCFLTSDLTVKVGDYGIGPSRYKEDYIETEDDK  161 (268)
T ss_pred             HHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHCCeeccCCccceEEEcCCccEEecccccccccCcchhhhcccCC
Confidence            64221              223444443             6999999999999999999999986532211 1111233


Q ss_pred             eecccc
Q 047066          239 QGTLGY  244 (256)
Q Consensus       239 ~Gt~~y  244 (256)
                      .|++.|
T Consensus       162 ~~~~~y  167 (268)
T cd05086         162 CVPLRW  167 (268)
T ss_pred             cCcccc
Confidence            466666

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 2 (Aatyk2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk2 is a member of the Aatyk subfamily of proteins, which are receptor kinases containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk2 is also called lemur tyrosine kinase 2 (Lmtk2) or brain-enriched kinase (Brek). It is expressed at high levels in early postnatal brain, and has been shown to play a role in nerve growth factor (NGF) signaling. Studies with knockout mice reveal that Aatyk2 is essential for late stage

>cd07840 STKc_CDK9_like Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

Probab=99.77  E-value=4.9e-18  Score=141.80  Aligned_cols=151  Identities=23%  Similarity=0.257  Sum_probs=115.2

Q ss_pred             CcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC--hhHHHHHHHHHHHHHhCCCCcccceeeEEEEC--CEEEEEEe
Q 047066          106 YAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY--QSQIEQCINKVVVLSQINHRNVVGLLGCCLET--EVPLLVNE  180 (256)
Q Consensus       106 ~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~--~~~~lv~e  180 (256)
                      |++.+.||+|++|.||+|... ++..+++|.+....  ......+.+|+.+++.++|||++++++++...  +..++++|
T Consensus         1 y~~~~~l~~g~~~~vy~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~lv~e   80 (287)
T cd07840           1 YEKIAQIGEGTYGQVYKARNKKTGELVALKKIRMENEKEGFPITAIREIKLLQKLRHPNIVRLKEIVTSKGKGSIYMVFE   80 (287)
T ss_pred             CeeeEEeccCCCeEEEEEEECCCCeEEEEEEEecccccccchHHHHHHHHHHHhccCCCeeeheeeEecCCCCcEEEEec
Confidence            567789999999999999976 58899999887542  33446788999999999999999999999987  88999999


Q ss_pred             cCCC----------CCCCHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceeeee
Q 047066          181 FVKL----------PTISWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTM  237 (256)
Q Consensus       181 ~~~~----------~~l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~~  237 (256)
                      |+++          ..+++.....++.+++             +||+|+||++++++.+||+|||++...........+.
T Consensus        81 ~~~~~l~~~~~~~~~~~~~~~~~~i~~~i~~al~~LH~~~~~h~dl~p~nil~~~~~~~~l~d~g~~~~~~~~~~~~~~~  160 (287)
T cd07840          81 YMDHDLTGLLDSPEVKFTESQIKCYMKQLLEGLQYLHSNGILHRDIKGSNILINNDGVLKLADFGLARPYTKRNSADYTN  160 (287)
T ss_pred             cccccHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHCCceeccCcHHHeEEcCCCCEEEccccceeeccCCCcccccc
Confidence            9974          2455666666666655             5999999999999999999999998775543222223


Q ss_pred             eeecccc---c-c-cccCCCCCCC
Q 047066          238 VQGTLGY---Y-L-HTSQGTLNKE  256 (256)
Q Consensus       238 ~~Gt~~y---~-~-~~~~~t~ksD  256 (256)
                      ..+++.|   + + ....++.++|
T Consensus       161 ~~~~~~y~~PE~~~~~~~~~~~~D  184 (287)
T cd07840         161 RVITLWYRPPELLLGATRYGPEVD  184 (287)
T ss_pred             cccccccCCceeeEccccCChHHH
Confidence            3456666   2 2 2234566655

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA po

>cd06630 STKc_MEKK1 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1

Probab=99.77  E-value=8.3e-18  Score=139.19  Aligned_cols=152  Identities=19%  Similarity=0.339  Sum_probs=115.4

Q ss_pred             CCcccceeeeeCceEEEEEEE-CCCcEEEEEEecccC------hhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEE
Q 047066          105 NYAYDRMIGRGGYGTVFLGSL-SDNKAIAIKKSRIVY------QSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLL  177 (256)
Q Consensus       105 ~~~~~~~lg~G~~g~V~~~~~-~~~~~vavK~~~~~~------~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~l  177 (256)
                      +|+..+.||+|++|.||++.. .++..+++|.+....      ....+.+.+|+..++.++|+|++++++++...+..++
T Consensus         1 ~~~~~~~lg~g~~~~v~~~~~~~~~~~~alk~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~   80 (268)
T cd06630           1 EWLKGQQLGTGAFSSCYQARDVKTGTLMAVKQVTYVRNTSSEQEEVVEALRKEIRLMARLNHPHIIRMLGATCEDSHFNL   80 (268)
T ss_pred             CccccceecCcCceEEEEEEEcCCCcEEEEEEeecccCCchhHHHHHHHHHHHHHHHHHcCCCceehhhceeccCCeEEE
Confidence            467778999999999999986 468899999875432      1234678999999999999999999999999999999


Q ss_pred             EEecCCCCCC----------CHHHHHHHHHHHH-------------hccCCCcEEEcCCC-cEEEEecCCceecCCCCce
Q 047066          178 VNEFVKLPTI----------SWEVRIRIAAETA-------------EDIKSINILLDDNY-TTKVCDFGASKLVPIDETQ  233 (256)
Q Consensus       178 v~e~~~~~~l----------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~-~~ki~DFGla~~~~~~~~~  233 (256)
                      ++||+++++|          ++.....++.|++             +||+|+||+++.++ .+||+|||++..+......
T Consensus        81 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~ql~~al~~LH~~~i~H~~i~~~nil~~~~~~~~~l~dfg~~~~~~~~~~~  160 (268)
T cd06630          81 FVEWMAGGSVSHLLSKYGAFKEAVIINYTEQLLRGLSYLHENQIIHRDVKGANLLIDSTGQRLRIADFGAAARLAAKGTG  160 (268)
T ss_pred             EEeccCCCcHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCCEEEEccccccccccccccc
Confidence            9999998765          3344445555544             59999999998776 6999999999876543211


Q ss_pred             ---eeeeeeecccc----cccccCCCCCCC
Q 047066          234 ---LSTMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       234 ---~~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                         ......||..|    ...+..++.++|
T Consensus       161 ~~~~~~~~~~~~~~~~PE~~~~~~~~~~~D  190 (268)
T cd06630         161 AGEFQGQLLGTIAFMAPEVLRGEQYGRSCD  190 (268)
T ss_pred             CCccccccccccceeCHhHhccCCCCcccc
Confidence               11223477777    444556677766

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their

>cd05037 PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=99.77  E-value=3.4e-18  Score=140.77  Aligned_cols=118  Identities=22%  Similarity=0.382  Sum_probs=93.9

Q ss_pred             ceeeeeCceEEEEEEECCCc-----------EEEEEEecccChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEE
Q 047066          110 RMIGRGGYGTVFLGSLSDNK-----------AIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLV  178 (256)
Q Consensus       110 ~~lg~G~~g~V~~~~~~~~~-----------~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv  178 (256)
                      +.||+|+||.||+|...+..           .+++|........ ...+.+|+.+++.++||||+++++++.. +..+++
T Consensus         1 ~~lg~G~~~~v~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~~~-~~~~~~e~~~l~~l~h~~i~~~~~~~~~-~~~~lv   78 (259)
T cd05037           1 EHLGQGTFTNIYKGVLRVQSDLDIVGPGQEVSVVLKVLGSDHRD-SLAFFETASLMSQLSHKHLVKLYGVCVR-DENIMV   78 (259)
T ss_pred             CcccccccceEEEEEEeccCCccccCCccceeeeeeccccchhh-HHHHHHHHHHHHcCCCcchhheeeEEec-CCcEEE
Confidence            36899999999999975432           4677765543332 5778999999999999999999999988 778999


Q ss_pred             EecCCCCCC-----------CHHHHHHHHHHHH-------------hccCCCcEEEcCCC-------cEEEEecCCceec
Q 047066          179 NEFVKLPTI-----------SWEVRIRIAAETA-------------EDIKSINILLDDNY-------TTKVCDFGASKLV  227 (256)
Q Consensus       179 ~e~~~~~~l-----------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~-------~~ki~DFGla~~~  227 (256)
                      +||+++++|           ++.....++.|++             +||||+|||++.++       .+||+|||++...
T Consensus        79 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~i~H~dlkp~Nill~~~~~~~~~~~~~kl~Dfg~a~~~  158 (259)
T cd05037          79 EEYVKFGPLDVFLHREKNNVSLHWKLDVAKQLASALHYLEDKKLVHGNVCGKNILVARYGLNEGYVPFIKLSDPGIPITV  158 (259)
T ss_pred             EEcCCCCcHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHhhCCeecccCccceEEEecCccccCCceeEEeCCCCccccc
Confidence            999988765           3444455555544             69999999999887       7999999999875


Q ss_pred             CC
Q 047066          228 PI  229 (256)
Q Consensus       228 ~~  229 (256)
                      ..
T Consensus       159 ~~  160 (259)
T cd05037         159 LS  160 (259)
T ss_pred             cc
Confidence            43

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; pseudokinase domain (repeat1). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the ki

>cd05077 PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=99.77  E-value=4.4e-18  Score=140.90  Aligned_cols=142  Identities=18%  Similarity=0.308  Sum_probs=106.5

Q ss_pred             ceeeeeCceEEEEEEECC-------------CcEEEEEEecccChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEE
Q 047066          110 RMIGRGGYGTVFLGSLSD-------------NKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPL  176 (256)
Q Consensus       110 ~~lg~G~~g~V~~~~~~~-------------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~  176 (256)
                      +.||+|+||.||+|...+             ...+++|.+..........+.+|+.++..++||||+++++++......+
T Consensus         1 ~~lg~G~~~~vy~~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~~~~~l~~l~hp~iv~~~~~~~~~~~~~   80 (262)
T cd05077           1 EHLGRGTRTQIYAGILNYKDDDEDDGYSYEKEIKVILKVLDPSHRDISLAFFETASMMRQVSHKHIVLLYGVCVRDVENI   80 (262)
T ss_pred             CccccCCcceEeeeecccCCCccccccchhhceeEEEeecChhhhhHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCCCE
Confidence            368999999999997532             2257888776555555567889999999999999999999999988999


Q ss_pred             EEEecCCCCCC-----------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCc-------EEEEecCCce
Q 047066          177 LVNEFVKLPTI-----------SWEVRIRIAAETA-------------EDIKSINILLDDNYT-------TKVCDFGASK  225 (256)
Q Consensus       177 lv~e~~~~~~l-----------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~-------~ki~DFGla~  225 (256)
                      ++|||++++++           ++.....++.|++             +||||+|||++.++.       +|++|||++.
T Consensus        81 lv~e~~~~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~dlkp~Nill~~~~~~~~~~~~~~l~d~g~~~  160 (262)
T cd05077          81 MVEEFVEFGPLDLFMHRKSDVLTTPWKFKVAKQLASALSYLEDKDLVHGNVCTKNILLAREGIDGECGPFIKLSDPGIPI  160 (262)
T ss_pred             EEEecccCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhhhCCeECCCCCcccEEEecCCccCCCCceeEeCCCCCCc
Confidence            99999987653           4555566666655             699999999987664       8999999987


Q ss_pred             ecCCCCceeeeeeeecccc----ccc-ccCCCCCCC
Q 047066          226 LVPIDETQLSTMVQGTLGY----YLH-TSQGTLNKE  256 (256)
Q Consensus       226 ~~~~~~~~~~~~~~Gt~~y----~~~-~~~~t~ksD  256 (256)
                      ......     ...|++.|    .+. +..++.++|
T Consensus       161 ~~~~~~-----~~~~~~~y~aPE~~~~~~~~~~~~D  191 (262)
T cd05077         161 TVLSRQ-----ECVERIPWIAPECVEDSKNLSIAAD  191 (262)
T ss_pred             cccCcc-----cccccccccChhhhcCCCCCCchhH
Confidence            653221     22366666    222 455666665

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic dom

>cd05083 PTKc_Chk Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase

Probab=99.77  E-value=3.4e-18  Score=140.68  Aligned_cols=146  Identities=21%  Similarity=0.384  Sum_probs=109.3

Q ss_pred             cCCCcccceeeeeCceEEEEEEECCCcEEEEEEecccChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEecC
Q 047066          103 TNNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEFV  182 (256)
Q Consensus       103 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~  182 (256)
                      .++|++.+.||+|+||.||++.. .++.+++|......  ..+.+.+|+.+++.++|||++++++++... ..+++|||+
T Consensus         5 ~~~~~~~~~lg~g~~g~v~~~~~-~~~~~~iK~~~~~~--~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~-~~~~v~e~~   80 (254)
T cd05083           5 LQKLTLGEIIGEGEFGAVLQGEY-TGQKVAVKNIKCDV--TAQAFLEETAVMTKLHHKNLVRLLGVILHN-GLYIVMELM   80 (254)
T ss_pred             HHHceeeeeeccCCCCceEeccc-CCCceEEEeecCcc--hHHHHHHHHHHHHhCCCCCcCeEEEEEcCC-CcEEEEECC
Confidence            35688889999999999999875 67789999876432  336788999999999999999999998764 478999999


Q ss_pred             CCCCC------------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceeeee
Q 047066          183 KLPTI------------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTM  237 (256)
Q Consensus       183 ~~~~l------------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~~  237 (256)
                      .+++|            ++.....++.+++             +||+|+||+++.++.+||+|||+++........    
T Consensus        81 ~~~~L~~~l~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~~~H~dl~p~nili~~~~~~kl~Dfg~~~~~~~~~~~----  156 (254)
T cd05083          81 SKGNLVNFLRTRGRALVSVIQLLQFSLDVAEGMEYLESKKLVHRDLAARNILVSEDGVAKVSDFGLARVGSMGVDN----  156 (254)
T ss_pred             CCCCHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHHHhCCeeccccCcceEEEcCCCcEEECCCccceeccccCCC----
Confidence            88665            3334444454444             699999999999999999999999864322111    


Q ss_pred             eeecccc----cccccCCCCCCC
Q 047066          238 VQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       238 ~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      ...+..|    ++.++.++.++|
T Consensus       157 ~~~~~~y~~pe~~~~~~~~~~~D  179 (254)
T cd05083         157 SKLPVKWTAPEALKHKKFSSKSD  179 (254)
T ss_pred             CCCCceecCHHHhccCCcCchhh
Confidence            1123345    444566666665

Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src ki

>cd05613 STKc_MSK1_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 1

Probab=99.77  E-value=1e-17  Score=140.48  Aligned_cols=140  Identities=27%  Similarity=0.302  Sum_probs=107.8

Q ss_pred             CCcccceeeeeCceEEEEEEE----CCCcEEEEEEecccC----hhHHHHHHHHHHHHHhC-CCCcccceeeEEEECCEE
Q 047066          105 NYAYDRMIGRGGYGTVFLGSL----SDNKAIAIKKSRIVY----QSQIEQCINKVVVLSQI-NHRNVVGLLGCCLETEVP  175 (256)
Q Consensus       105 ~~~~~~~lg~G~~g~V~~~~~----~~~~~vavK~~~~~~----~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~  175 (256)
                      +|++.+.||+|+||.||.+..    .++..+|+|.+....    ....+.+.+|+.++..+ +|+||+++++.+...+..
T Consensus         1 ~y~~~~~lg~G~~g~v~~~~~~~~~~~g~~~aiK~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~   80 (290)
T cd05613           1 NFELLKVLGTGAYGKVFLVRKVSGHDSGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTDTKL   80 (290)
T ss_pred             CceeeeeeccCCcceEEEEEeccCCCCCceEEEEEeehhhhhhcchHHHHHHHHHHHHHhcccCCChhceeeEeecCCeE
Confidence            477889999999999999985    367899999876432    22346678899999999 699999999999999999


Q ss_pred             EEEEecCCCCCCC----------HHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCc
Q 047066          176 LLVNEFVKLPTIS----------WEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDET  232 (256)
Q Consensus       176 ~lv~e~~~~~~l~----------~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~  232 (256)
                      ++++||+++++|.          ......++.+++             +||+|+|||+++++.+||+|||+++.......
T Consensus        81 ~lv~e~~~~~~L~~~l~~~~~l~~~~~~~~~~qi~~al~~lH~~~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~~~~~  160 (290)
T cd05613          81 HLILDYINGGELFTHLSQRERFKEQEVQIYSGEIVLALEHLHKLGIIYRDIKLENILLDSNGHVVLTDFGLSKEFHEDEV  160 (290)
T ss_pred             EEEEecCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHHHeEECCCCCEEEeeCccceecccccc
Confidence            9999999987653          333333333433             69999999999999999999999987654332


Q ss_pred             eeeeeeeecccc
Q 047066          233 QLSTMVQGTLGY  244 (256)
Q Consensus       233 ~~~~~~~Gt~~y  244 (256)
                      .......|+..|
T Consensus       161 ~~~~~~~~~~~y  172 (290)
T cd05613         161 ERAYSFCGTIEY  172 (290)
T ss_pred             cccccccCCccc
Confidence            222234577777

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK1, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>cd05058 PTKc_Met_Ron Catalytic domain of the Protein Tyrosine Kinases, Met and Ron

Probab=99.77  E-value=5.9e-18  Score=139.72  Aligned_cols=147  Identities=28%  Similarity=0.459  Sum_probs=106.5

Q ss_pred             ceeeeeCceEEEEEEEC----CCcEEEEEEeccc-ChhHHHHHHHHHHHHHhCCCCcccceeeEEEE-CCEEEEEEecCC
Q 047066          110 RMIGRGGYGTVFLGSLS----DNKAIAIKKSRIV-YQSQIEQCINKVVVLSQINHRNVVGLLGCCLE-TEVPLLVNEFVK  183 (256)
Q Consensus       110 ~~lg~G~~g~V~~~~~~----~~~~vavK~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~-~~~~~lv~e~~~  183 (256)
                      +.||+|+||.||+|...    +...+|+|.+... .....+.+.+|+.+++.++|||++++++++.. .+..++++||+.
T Consensus         1 ~~lg~g~~g~v~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~lv~e~~~   80 (262)
T cd05058           1 RVIGKGHFGCVYHGTLIDSDGQKIHCAVKSLNRITDLEEVEQFLKEGIIMKDFSHPNVLSLLGICLPSEGSPLVVLPYMK   80 (262)
T ss_pred             CcccccCCceEEEEEEecCCCceEEEEEEecCccCCHHHHHHHHHHHHHHccCCCCCcceEEEEeecCCCCcEEEEecCC
Confidence            36899999999999853    2457899987543 34456788999999999999999999998764 556889999998


Q ss_pred             CCCC-----------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCcee---ee
Q 047066          184 LPTI-----------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQL---ST  236 (256)
Q Consensus       184 ~~~l-----------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~---~~  236 (256)
                      +++|           .+...+.++.+++             +||||+|||+++++.+||+|||+++.+.......   ..
T Consensus        81 ~~~L~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlk~~nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~  160 (262)
T cd05058          81 HGDLRNFIRSETHNPTVKDLIGFGLQVAKGMEYLASKKFVHRDLAARNCMLDESFTVKVADFGLARDIYDKEYYSVHNHT  160 (262)
T ss_pred             CCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCccccccCcceEEEcCCCcEEECCccccccccCCcceeecccc
Confidence            8765           2333344444443             6999999999999999999999998654322111   11


Q ss_pred             eeeecccc----cccccCCCCCCC
Q 047066          237 MVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       237 ~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      ...+++.|    ++.+..++.++|
T Consensus       161 ~~~~~~~y~aPE~~~~~~~~~~~D  184 (262)
T cd05058         161 GAKLPVKWMALESLQTQKFTTKSD  184 (262)
T ss_pred             cCcCCccccChhHhccCccchHHH
Confidence            22345556    444566666665

Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also ca

>cd06623 PKc_MAPKK_plant_like Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

Probab=99.77  E-value=1.6e-17  Score=137.09  Aligned_cols=151  Identities=22%  Similarity=0.277  Sum_probs=118.5

Q ss_pred             CCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccCh-hHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEecC
Q 047066          105 NYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVYQ-SQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEFV  182 (256)
Q Consensus       105 ~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~  182 (256)
                      +|++.+.||+|++|.||++... +++.+++|.+..... .....+.+|+..+..++|+|++++++++...+..++++||+
T Consensus         2 ~~~~~~~i~~g~~~~v~~~~~~~~~~~~~vk~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~   81 (264)
T cd06623           2 DLERVKVLGQGSSGVVYKVRHKPTGKIYALKKIHVDGDEEFRKQLLRELKTLRSCESPYVVKCYGAFYKEGEISIVLEYM   81 (264)
T ss_pred             cceeeeeeeecCCeEEEEEEEcCCCcEEEEEEeccCcchHHHHHHHHHHHHHHhcCCCCeeeEEEEEccCCeEEEEEEec
Confidence            5788899999999999999976 589999998866543 44578999999999999999999999999999999999999


Q ss_pred             CCCCCC----------HHHHHHHHHHHH--------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceeeeee
Q 047066          183 KLPTIS----------WEVRIRIAAETA--------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMV  238 (256)
Q Consensus       183 ~~~~l~----------~~~~~~~~~~i~--------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~~~  238 (256)
                      ++++|.          ......++.+++              +||+|+||+++.++.++|+|||++.......... ...
T Consensus        82 ~~~~L~~~l~~~~~l~~~~~~~~~~~l~~~l~~lh~~~~~~H~~l~~~ni~~~~~~~~~l~df~~~~~~~~~~~~~-~~~  160 (264)
T cd06623          82 DGGSLADLLKKVGKIPEPVLAYIARQILKGLDYLHTKRHIIHRDIKPSNLLINSKGEVKIADFGISKVLENTLDQC-NTF  160 (264)
T ss_pred             CCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhccCCCccCCCCHHHEEECCCCCEEEccCccceecccCCCcc-cce
Confidence            976653          333344444333              6999999999999999999999998775443322 234


Q ss_pred             eecccc----cccccCCCCCCC
Q 047066          239 QGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       239 ~Gt~~y----~~~~~~~t~ksD  256 (256)
                      .|+..|    ...+..++.++|
T Consensus       161 ~~~~~y~~pE~~~~~~~~~~~D  182 (264)
T cd06623         161 VGTVTYMSPERIQGESYSYAAD  182 (264)
T ss_pred             eecccccCHhhhCCCCCCchhh
Confidence            477777    444556666666

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of

>cd06616 PKc_MKK4 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4

Probab=99.77  E-value=4.5e-18  Score=142.48  Aligned_cols=151  Identities=24%  Similarity=0.302  Sum_probs=113.3

Q ss_pred             CCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC-hhHHHHHHHHHHHHHhCC-CCcccceeeEEEECCEEEEEEe
Q 047066          104 NNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY-QSQIEQCINKVVVLSQIN-HRNVVGLLGCCLETEVPLLVNE  180 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~-h~niv~l~~~~~~~~~~~lv~e  180 (256)
                      ++|+..+.||+|+||.||++... +++.+|+|.+.... ......+.+|+.++.++. ||||+++++++...+..+++||
T Consensus         4 ~~~~~~~~lg~G~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~~~~~~~iv~~~~~~~~~~~~~~~~e   83 (288)
T cd06616           4 EDLKDLGEIGRGAFGTVNKMLHKPSGTIMAVKRIRSTVDEKEQKRLLMDLDVVMRSSDCPYIVKFYGALFREGDCWICME   83 (288)
T ss_pred             HHhHHHHHhCCCCceEEEEEEECCCCCEEEEEEehhccChHHHHHHHHHHHHHHHhcCCCCEeeeeeEEecCCcEEEEEe
Confidence            35666789999999999999865 68899999886433 344567899999999995 9999999999999889999999


Q ss_pred             cCCC--------------CCCCHHHHHHHHHH--------------HHhccCCCcEEEcCCCcEEEEecCCceecCCCCc
Q 047066          181 FVKL--------------PTISWEVRIRIAAE--------------TAEDIKSINILLDDNYTTKVCDFGASKLVPIDET  232 (256)
Q Consensus       181 ~~~~--------------~~l~~~~~~~~~~~--------------i~rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~  232 (256)
                      |+..              +.+++.....++.+              +|+||||+||+++.++.+||+|||+++.+..+..
T Consensus        84 ~~~~~l~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~~~  163 (288)
T cd06616          84 LMDISLDKFYKYVYEVLKSVIPEEILGKIAVATVKALNYLKEELKIIHRDVKPSNILLDRNGNIKLCDFGISGQLVDSIA  163 (288)
T ss_pred             cccCCHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhcCCeeccCCCHHHEEEccCCcEEEeecchhHHhccCCc
Confidence            9754              23444444443333              3479999999999999999999999986643322


Q ss_pred             eeeeeeeecccc----ccccc---CCCCCCC
Q 047066          233 QLSTMVQGTLGY----YLHTS---QGTLNKE  256 (256)
Q Consensus       233 ~~~~~~~Gt~~y----~~~~~---~~t~ksD  256 (256)
                      .  ....|++.|    .+.+.   .++.++|
T Consensus       164 ~--~~~~~~~~y~aPE~~~~~~~~~~~~~~D  192 (288)
T cd06616         164 K--TRDAGCRPYMAPERIDPSARDGYDVRSD  192 (288)
T ss_pred             c--ccccCccCccCHHHhccccccCCcchhh
Confidence            1  223477777    33333   5777776

Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates

>cd06648 STKc_PAK_II Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase

Probab=99.77  E-value=1.4e-17  Score=139.49  Aligned_cols=150  Identities=23%  Similarity=0.281  Sum_probs=116.9

Q ss_pred             CcccceeeeeCceEEEEEEEC-CCcEEEEEEecccChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEecCCC
Q 047066          106 YAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEFVKL  184 (256)
Q Consensus       106 ~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~~  184 (256)
                      |...+.||+|++|.||++... +++.+++|.+........+.+.+|+.+++.++|||++++++++...+..++++||+.+
T Consensus        21 ~~~~~~lg~g~~g~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~e~~~l~~~~h~~vv~~~~~~~~~~~~~~v~e~~~~  100 (285)
T cd06648          21 LDNFVKIGEGSTGIVCIATDKSTGRQVAVKKMDLRKQQRRELLFNEVVIMRDYQHPNIVEMYSSYLVGDELWVVMEFLEG  100 (285)
T ss_pred             hhcceEeccCCCeEEEEEEECCCCCEEEEEEEeccchhHHHHHHHHHHHHHHcCCCChheEEEEEEcCCeEEEEEeccCC
Confidence            444569999999999999864 6889999988655545556788999999999999999999999999999999999988


Q ss_pred             CCCC---------HHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceeeeeeeecc
Q 047066          185 PTIS---------WEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTL  242 (256)
Q Consensus       185 ~~l~---------~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~~~~Gt~  242 (256)
                      ++|.         ......++.+++             +||+|+||+++.++.++|+|||++......... .....|++
T Consensus       101 ~~L~~~~~~~~~~~~~~~~~~~ql~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~~l~d~g~~~~~~~~~~~-~~~~~~~~  179 (285)
T cd06648         101 GALTDIVTHTRMNEEQIATVCLAVLKALSFLHAQGVIHRDIKSDSILLTSDGRVKLSDFGFCAQVSKEVPR-RKSLVGTP  179 (285)
T ss_pred             CCHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCChhhEEEcCCCcEEEcccccchhhccCCcc-cccccCCc
Confidence            7663         333344444444             699999999999999999999998765433222 22345888


Q ss_pred             cc----cccccCCCCCCC
Q 047066          243 GY----YLHTSQGTLNKE  256 (256)
Q Consensus       243 ~y----~~~~~~~t~ksD  256 (256)
                      .|    ...++.++.++|
T Consensus       180 ~y~aPE~~~~~~~~~~~D  197 (285)
T cd06648         180 YWMAPEVISRLPYGTEVD  197 (285)
T ss_pred             cccCHHHhcCCCCCCccc
Confidence            88    445566777777

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs foun

>cd07837 STKc_CdkB_plant Catalytic domain of the Serine/Threonine Kinase, Plant B-type Cyclin-Dependent protein Kinase

Probab=99.77  E-value=9.6e-18  Score=140.91  Aligned_cols=152  Identities=22%  Similarity=0.287  Sum_probs=113.1

Q ss_pred             CCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC--hhHHHHHHHHHHHHHhC-CCCcccceeeEEEECCE-----
Q 047066          104 NNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY--QSQIEQCINKVVVLSQI-NHRNVVGLLGCCLETEV-----  174 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~-----  174 (256)
                      ++|++.+.||+|+||.||+|... +++.||+|......  ......+.+|+.+++.+ +||||+++++++...+.     
T Consensus         1 ~~y~~~~~lg~g~~g~vy~~~~~~~~~~v~lK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~~~~~~~~   80 (295)
T cd07837           1 DAYEKLEKIGEGTYGKVYKARDKNTGKLVALKKTRLEMDEEGIPPTALREISLLQMLSESIYIVRLLDVEHVEEKNGKPS   80 (295)
T ss_pred             CCceEeeEecccCCeEEEEEEECCCCcEEEEEeehhhccccCCchHHHHHHHHHHHccCCCCccceeeeEeecCCCCCce
Confidence            36888899999999999999975 68899999875432  22335788899999999 57999999999987665     


Q ss_pred             EEEEEecCCCC--------------CCCHHHHHHHHHHHH-------------hccCCCcEEEcC-CCcEEEEecCCcee
Q 047066          175 PLLVNEFVKLP--------------TISWEVRIRIAAETA-------------EDIKSINILLDD-NYTTKVCDFGASKL  226 (256)
Q Consensus       175 ~~lv~e~~~~~--------------~l~~~~~~~~~~~i~-------------rdlk~~NiLi~~-~~~~ki~DFGla~~  226 (256)
                      .+++|||+++.              .+++.....++.|++             +||+|+||+++. ++.+||+|||+++.
T Consensus        81 ~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~L~~LH~~~i~H~dl~~~nil~~~~~~~~kl~dfg~~~~  160 (295)
T cd07837          81 LYLVFEYLDSDLKKFMDSNGRGPGRPLPAKTIKSFMYQLLKGVAHCHKHGVMHRDLKPQNLLVDKQKGLLKIADLGLGRA  160 (295)
T ss_pred             EEEEeeccCcCHHHHHHHhcccCCCCCCHHHHHHHHHHHHHHHHHHHHCCeeecCCChHHEEEecCCCeEEEeeccccee
Confidence            89999999762              235556666666665             699999999998 88999999999987


Q ss_pred             cCCCCceeeeeeeecccc----cc-cccCCCCCCC
Q 047066          227 VPIDETQLSTMVQGTLGY----YL-HTSQGTLNKE  256 (256)
Q Consensus       227 ~~~~~~~~~~~~~Gt~~y----~~-~~~~~t~ksD  256 (256)
                      +...... .+...+++.|    .+ ....++.++|
T Consensus       161 ~~~~~~~-~~~~~~~~~~~aPE~~~~~~~~~~~~D  194 (295)
T cd07837         161 FSIPVKS-YTHEIVTLWYRAPEVLLGSTHYSTPVD  194 (295)
T ss_pred             cCCCccc-cCCcccccCCCChHHhhCCCCCCchHH
Confidence            6433221 1222366666    22 2344566766

Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrating developm

>cd06621 PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases

Probab=99.76  E-value=1.2e-17  Score=140.00  Aligned_cols=150  Identities=21%  Similarity=0.232  Sum_probs=113.3

Q ss_pred             CCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC-hhHHHHHHHHHHHHHhCCCCcccceeeEEEE--CCEEEEEE
Q 047066          104 NNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY-QSQIEQCINKVVVLSQINHRNVVGLLGCCLE--TEVPLLVN  179 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~--~~~~~lv~  179 (256)
                      ++|...+.||.|++|.||++... +++.+++|.+.... ......+.+|+++++.++||||+++++++..  .+..+++|
T Consensus         1 ~~~~~~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~   80 (287)
T cd06621           1 EKIVELSRLGEGAGGSVTKCRLKNTGMIFALKTITTDPNPDLQKQILRELEINKSCKSPYIVKYYGAFLDESSSSIGIAM   80 (287)
T ss_pred             CceEEEEEeccCCceEEEEEEECCCCeEEEEEEEecCCchHHHHHHHHHHHHHHhCCCCCeeeeeeEEEccCCCeEEEEE
Confidence            35778889999999999999975 57889999876443 3345678999999999999999999998865  44689999


Q ss_pred             ecCCCCCCCH--------------HHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCc
Q 047066          180 EFVKLPTISW--------------EVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDET  232 (256)
Q Consensus       180 e~~~~~~l~~--------------~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~  232 (256)
                      ||+++++|..              .....++.+++             +||+|+||+++.++.++|+|||++........
T Consensus        81 e~~~~~~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~lH~~~i~H~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~  160 (287)
T cd06621          81 EYCEGGSLDSIYKKVKKRGGRIGEKVLGKIAESVLKGLSYLHSRKIIHRDIKPSNILLTRKGQVKLCDFGVSGELVNSLA  160 (287)
T ss_pred             EecCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEEecCCeEEEeecccccccccccc
Confidence            9999877632              22234444443             69999999999999999999999876543221


Q ss_pred             eeeeeeeecccc----cccccCCCCCCC
Q 047066          233 QLSTMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       233 ~~~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                         ....++..|    ...++.++.++|
T Consensus       161 ---~~~~~~~~y~~pE~~~~~~~~~~~D  185 (287)
T cd06621         161 ---GTFTGTSFYMAPERIQGKPYSITSD  185 (287)
T ss_pred             ---ccccCCccccCHHHhcCCCCCchhh
Confidence               123356666    445566676666

Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd05038 PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=99.76  E-value=1e-17  Score=139.75  Aligned_cols=126  Identities=20%  Similarity=0.392  Sum_probs=103.7

Q ss_pred             CCCcccceeeeeCceEEEEEEEC-----CCcEEEEEEecccChh-HHHHHHHHHHHHHhCCCCcccceeeEEEE--CCEE
Q 047066          104 NNYAYDRMIGRGGYGTVFLGSLS-----DNKAIAIKKSRIVYQS-QIEQCINKVVVLSQINHRNVVGLLGCCLE--TEVP  175 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~V~~~~~~-----~~~~vavK~~~~~~~~-~~~~~~~E~~~l~~l~h~niv~l~~~~~~--~~~~  175 (256)
                      +.|++.+.||+|+||.||++...     ++..+|+|.+...... ..+.+.+|+.+++.++||||+++++++..  ....
T Consensus         4 ~~~~~~~~ig~g~~~~v~~~~~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~ei~~l~~l~~~~i~~~~~~~~~~~~~~~   83 (284)
T cd05038           4 RHLKFIKQLGEGHFGKVELCRYDPLGDNTGEQVAVKSLNHSGEEQHRSDFEREIEILRTLDHENIVKYKGVCEKPGGRSL   83 (284)
T ss_pred             hhchhheeeccCCCeeEEEeeecCCCCCCceEEEEEEeccccchHHHHHHHHHHHHHHhCCCCChheEEeeeecCCCCce
Confidence            46778899999999999999853     3678999988755443 45789999999999999999999999887  5678


Q ss_pred             EEEEecCCCCCC-----------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCC
Q 047066          176 LLVNEFVKLPTI-----------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPI  229 (256)
Q Consensus       176 ~lv~e~~~~~~l-----------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~  229 (256)
                      +++|||+++++|           ++.....++.+++             +||+|+||+++.++.+||+|||++.....
T Consensus        84 ~lv~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~aL~~lH~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~  161 (284)
T cd05038          84 RLIMEYLPSGSLRDYLQRHRDQINLKRLLLFSSQICKGMDYLGSQRYIHRDLAARNILVESEDLVKISDFGLAKVLPE  161 (284)
T ss_pred             EEEEecCCCCCHHHHHHhCccccCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHhEEEcCCCCEEEccccccccccc
Confidence            999999988664           3444455555544             69999999999999999999999987753

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by aut

>cd06627 STKc_Cdc7_like Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

Probab=99.76  E-value=2.6e-17  Score=134.89  Aligned_cols=151  Identities=21%  Similarity=0.351  Sum_probs=117.8

Q ss_pred             CCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccCh--hHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEec
Q 047066          105 NYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVYQ--SQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEF  181 (256)
Q Consensus       105 ~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~  181 (256)
                      +|++.+.||+|++|.||++... ++..+++|.......  ...+.+.+|++++.+++|||++++.+++...+..++++||
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~   80 (254)
T cd06627           1 NYQLGDLIGRGAFGVVYKGLNLETGDFVAIKQISLEKIKEEALKSIMQEIDLLKNLKHPNIVKYIGSIETSDSLYIILEY   80 (254)
T ss_pred             CceeeeEEcccCCeEEEEEEEcCCCcEEEEEEecccccCHHHHHHHHHHHHHHHhCCCCCccEEEEEEEeCCEEEEEEec
Confidence            4777899999999999999865 678999998865543  4557899999999999999999999999999999999999


Q ss_pred             CCCCCC----------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceeeeee
Q 047066          182 VKLPTI----------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMV  238 (256)
Q Consensus       182 ~~~~~l----------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~~~  238 (256)
                      +++++|          ++.....++.+++             +||+|+||+++.++.++|+|||++......... ....
T Consensus        81 ~~~~~L~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~~-~~~~  159 (254)
T cd06627          81 AENGSLRQIIKKFGPFPESLVAVYVYQVLQGLAYLHEQGVIHRDIKAANILTTKDGVVKLADFGVATKLNDVSKD-DASV  159 (254)
T ss_pred             CCCCcHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhCCcccCCCCHHHEEECCCCCEEEeccccceecCCCccc-cccc
Confidence            987544          4555555555544             699999999999999999999999887544332 2233


Q ss_pred             eecccc----cccccCCCCCCC
Q 047066          239 QGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       239 ~Gt~~y----~~~~~~~t~ksD  256 (256)
                      .|++.|    ...+..++.++|
T Consensus       160 ~~~~~y~~pe~~~~~~~~~~~D  181 (254)
T cd06627         160 VGTPYWMAPEVIEMSGASTASD  181 (254)
T ss_pred             ccchhhcCHhhhcCCCCCcchh
Confidence            477777    333444555555

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast

>cd06917 STKc_NAK1_like Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases

Probab=99.76  E-value=1.5e-17  Score=138.49  Aligned_cols=151  Identities=23%  Similarity=0.375  Sum_probs=116.0

Q ss_pred             CCcccceeeeeCceEEEEEEEC-CCcEEEEEEeccc-ChhHHHHHHHHHHHHHhCC---CCcccceeeEEEECCEEEEEE
Q 047066          105 NYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIV-YQSQIEQCINKVVVLSQIN---HRNVVGLLGCCLETEVPLLVN  179 (256)
Q Consensus       105 ~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~-~~~~~~~~~~E~~~l~~l~---h~niv~l~~~~~~~~~~~lv~  179 (256)
                      .|+..+.||+|+||.||+|... ++..+++|.+... .......+.+|+.+++.++   |||++++++++...+..+++|
T Consensus         2 ~y~~~~~l~~g~~g~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~~~~~~~vi~~~~~~~~~~~~~lv~   81 (277)
T cd06917           2 LYQRLELIGRGAYGAVYRGKHVPTGRVVALKIINLDTPDDDVSDIQREVALLSQLRQSQPPNITKYYGSYLKGPRLWIIM   81 (277)
T ss_pred             hhhhhhheeccCCceEEEEEEcCCCcEEEEEEecCCCCchhHHHHHHHHHHHHHhccCCCCCeeeEeeeeeeCCEEEEEE
Confidence            4677789999999999999964 6889999987643 3445567889999999986   999999999999999999999


Q ss_pred             ecCCCCCC---------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceeeee
Q 047066          180 EFVKLPTI---------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTM  237 (256)
Q Consensus       180 e~~~~~~l---------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~~  237 (256)
                      ||+++++|         ++.....++.+++             +||+|+||++++++.++|+|||++..+..+... ...
T Consensus        82 e~~~~~~L~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~i~H~dl~p~ni~i~~~~~~~l~dfg~~~~~~~~~~~-~~~  160 (277)
T cd06917          82 EYAEGGSVRTLMKAGPIAEKYISVIIREVLVALKYIHKVGVIHRDIKAANILVTNTGNVKLCDFGVAALLNQNSSK-RST  160 (277)
T ss_pred             ecCCCCcHHHHHHccCCCHHHHHHHHHHHHHHHHHHHhCCcccCCcCHHHEEEcCCCCEEEccCCceeecCCCccc-ccc
Confidence            99988654         4444445554444             599999999999999999999999887544322 223


Q ss_pred             eeecccc----cccc-cCCCCCCC
Q 047066          238 VQGTLGY----YLHT-SQGTLNKE  256 (256)
Q Consensus       238 ~~Gt~~y----~~~~-~~~t~ksD  256 (256)
                      ..|++.|    +..+ ..++.++|
T Consensus       161 ~~~~~~y~aPE~~~~~~~~~~~~D  184 (277)
T cd06917         161 FVGTPYWMAPEVITEGKYYDTKAD  184 (277)
T ss_pred             ccCCcceeCHHHhccCCccccchh
Confidence            3577777    2332 33566666

Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of cent

>PTZ00284 protein kinase; Provisional

Probab=99.76  E-value=5.4e-18  Score=151.71  Aligned_cols=153  Identities=16%  Similarity=0.183  Sum_probs=110.0

Q ss_pred             HHhhcCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccChhHHHHHHHHHHHHHhCCC------CcccceeeEEEE
Q 047066           99 LKIATNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVYQSQIEQCINKVVVLSQINH------RNVVGLLGCCLE  171 (256)
Q Consensus        99 ~~~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h------~niv~l~~~~~~  171 (256)
                      +....++|++.+.||+|+||.||+|... .++.||||+++.... ..+....|+.+++.++|      ++++.+.+++..
T Consensus       124 ~~~~~~~y~i~~~lG~G~fg~V~~a~~~~~~~~vAvK~i~~~~~-~~~~~~~e~~~l~~l~~~~~~~~~~i~~i~~~~~~  202 (467)
T PTZ00284        124 IDVSTQRFKILSLLGEGTFGKVVEAWDRKRKEYCAVKIVRNVPK-YTRDAKIEIQFMEKVRQADPADRFPLMKIQRYFQN  202 (467)
T ss_pred             cccCCCcEEEEEEEEeccCEEEEEEEEcCCCeEEEEEEEecchh-hHHHHHHHHHHHHHHhhcCcccCcceeeeEEEEEc
Confidence            3445678999999999999999999865 578899998864322 23445667777776654      458888888875


Q ss_pred             -CCEEEEEEecCCC---------CCCCHHHHHHHHHH--------------HHhccCCCcEEEcCCC-------------
Q 047066          172 -TEVPLLVNEFVKL---------PTISWEVRIRIAAE--------------TAEDIKSINILLDDNY-------------  214 (256)
Q Consensus       172 -~~~~~lv~e~~~~---------~~l~~~~~~~~~~~--------------i~rdlk~~NiLi~~~~-------------  214 (256)
                       .+..+++||++.+         +.+++.....++.|              +||||||+|||++.++             
T Consensus       203 ~~~~~~iv~~~~g~~l~~~l~~~~~l~~~~~~~i~~qi~~aL~yLH~~~gIiHrDlKP~NILl~~~~~~~~~~~~~~~~~  282 (467)
T PTZ00284        203 ETGHMCIVMPKYGPCLLDWIMKHGPFSHRHLAQIIFQTGVALDYFHTELHLMHTDLKPENILMETSDTVVDPVTNRALPP  282 (467)
T ss_pred             CCceEEEEEeccCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhcCCeecCCCCHHHEEEecCCcccccccccccCC
Confidence             4578999998744         33444444444333              4579999999998765             


Q ss_pred             ---cEEEEecCCceecCCCCceeeeeeeecccc----cccccCCCCCCC
Q 047066          215 ---TTKVCDFGASKLVPIDETQLSTMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       215 ---~~ki~DFGla~~~~~~~~~~~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                         .+||+|||++......    .+..+||+.|    .+.+..++.++|
T Consensus       283 ~~~~vkl~DfG~~~~~~~~----~~~~~gt~~Y~APE~~~~~~~~~~~D  327 (467)
T PTZ00284        283 DPCRVRICDLGGCCDERHS----RTAIVSTRHYRSPEVVLGLGWMYSTD  327 (467)
T ss_pred             CCceEEECCCCccccCccc----cccccCCccccCcHHhhcCCCCcHHH
Confidence               4999999988653221    2345699999    556677888776

>PLN00009 cyclin-dependent kinase A; Provisional

Probab=99.76  E-value=1.2e-17  Score=140.34  Aligned_cols=152  Identities=25%  Similarity=0.320  Sum_probs=111.1

Q ss_pred             CCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC--hhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEe
Q 047066          104 NNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY--QSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNE  180 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e  180 (256)
                      ++|++.+.||+|.+|.||+|..+ +++.+++|.+....  ....+.+.+|+.+++.++|||++++++++...+..+++||
T Consensus         2 ~~y~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   81 (294)
T PLN00009          2 DQYEKVEKIGEGTYGVVYKARDRVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEKRLYLVFE   81 (294)
T ss_pred             CceEEEEEecCCCCEEEEEEEecCCCcEEEEEehhhccccccchHHHHHHHHHHHhccCCCEeeEEEEEecCCeEEEEEe
Confidence            46888899999999999999975 68899999875432  2333568899999999999999999999999999999999


Q ss_pred             cCCCCC-----------CCHHHHHHHHHHHH-------------hccCCCcEEEcC-CCcEEEEecCCceecCCCCceee
Q 047066          181 FVKLPT-----------ISWEVRIRIAAETA-------------EDIKSINILLDD-NYTTKVCDFGASKLVPIDETQLS  235 (256)
Q Consensus       181 ~~~~~~-----------l~~~~~~~~~~~i~-------------rdlk~~NiLi~~-~~~~ki~DFGla~~~~~~~~~~~  235 (256)
                      |+++..           +++.....++.+++             +||+|+||+++. ++.+||+|||++......... .
T Consensus        82 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~~i~H~dl~p~nill~~~~~~~kl~dfg~~~~~~~~~~~-~  160 (294)
T PLN00009         82 YLDLDLKKHMDSSPDFAKNPRLIKTYLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRT-F  160 (294)
T ss_pred             cccccHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHhCCeeCCCCCcceEEEECCCCEEEEcccccccccCCCccc-c
Confidence            996522           12333334444443             699999999985 567999999999865433211 1


Q ss_pred             eeeeecccc----cccc-cCCCCCCC
Q 047066          236 TMVQGTLGY----YLHT-SQGTLNKE  256 (256)
Q Consensus       236 ~~~~Gt~~y----~~~~-~~~t~ksD  256 (256)
                      +...|++.|    ++.+ ..++.++|
T Consensus       161 ~~~~~~~~y~~PE~~~~~~~~~~~~D  186 (294)
T PLN00009        161 THEVVTLWYRAPEILLGSRHYSTPVD  186 (294)
T ss_pred             ccCceeecccCHHHHhCCCCCCcHHH
Confidence            223466666    2322 34566655

>cd05116 PTKc_Syk Catalytic domain of the Protein Tyrosine Kinase, Spleen tyrosine kinase

Probab=99.76  E-value=1.2e-17  Score=137.74  Aligned_cols=145  Identities=21%  Similarity=0.333  Sum_probs=106.7

Q ss_pred             eeeeeCceEEEEEEEC---CCcEEEEEEecccC--hhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEecCCCC
Q 047066          111 MIGRGGYGTVFLGSLS---DNKAIAIKKSRIVY--QSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEFVKLP  185 (256)
Q Consensus       111 ~lg~G~~g~V~~~~~~---~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~~~  185 (256)
                      .||+|+||.||+|.++   ++..+|+|.+....  ....+.+.+|+.+++.++||||+++++++.. +..+++|||++++
T Consensus         2 ~lg~G~~g~v~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-~~~~lv~e~~~~~   80 (257)
T cd05116           2 ELGSGNFGTVKKGMYKMKKSEKTVAVKILKNDNNDPALKDELLREANVMQQLDNPYIVRMIGICEA-ESWMLVMELAELG   80 (257)
T ss_pred             cCCCcCCcceEEeEEecCCCceEEEEEEccCCCCcHHHHHHHHHHHHHHHhCCCCCcceEEEEEcC-CCcEEEEecCCCC
Confidence            5899999999999753   57789999876433  3345678999999999999999999998864 5678999999987


Q ss_pred             CC----------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceeee--eeee
Q 047066          186 TI----------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLST--MVQG  240 (256)
Q Consensus       186 ~l----------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~--~~~G  240 (256)
                      +|          ++.....++.|++             +||||.||++++++.+||+|||+++.+.........  ...+
T Consensus        81 ~L~~~l~~~~~~~~~~~~~i~~qi~~al~~lH~~~i~H~dlkp~nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~  160 (257)
T cd05116          81 PLNKFLQKNKHVTEKNITELVHQVSMGMKYLEETNFVHRDLAARNVLLVTQHYAKISDFGLSKALGADENYYKAKTHGKW  160 (257)
T ss_pred             cHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCEeecccchhhEEEcCCCeEEECCCccccccCCCCCeeeecCCCCC
Confidence            65          3444455555554             699999999999999999999999877544332111  1123


Q ss_pred             cccc----cccccCCCCCCC
Q 047066          241 TLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       241 t~~y----~~~~~~~t~ksD  256 (256)
                      ++.|    ....+.++.++|
T Consensus       161 ~~~y~aPE~~~~~~~~~~~D  180 (257)
T cd05116         161 PVKWYAPECMNYYKFSSKSD  180 (257)
T ss_pred             CccccCHhHhccCCcCchhH
Confidence            4555    334455566665

Protein Tyrosine Kinase (PTK) family; Spleen tyrosine kinase (Syk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk, together with Zap-70, form the Syk subfamily of kinases which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Syk was first cloned from the spleen, and its function in hematopoietic cells is well-established. Syk is involved in the signaling downstream of activated receptors (including B-cell and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferatio

>cd06605 PKc_MAPKK Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

Probab=99.76  E-value=4.5e-18  Score=140.56  Aligned_cols=149  Identities=21%  Similarity=0.321  Sum_probs=115.5

Q ss_pred             CCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC-hhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEecC
Q 047066          105 NYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY-QSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEFV  182 (256)
Q Consensus       105 ~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~  182 (256)
                      +|+..+.||+|++|.||++..+ +++.+++|.+.... .....++.+|+++++.++||||+++++.+...+..++++||+
T Consensus         2 ~~~~~~~ig~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~~   81 (265)
T cd06605           2 DLEYLGELGAGNSGVVSKVLHRPTGKIMAVKTIRLEINEAIQKQILRELDILHKCNSPYIVGFYGAFYNNGDISICMEYM   81 (265)
T ss_pred             cchHHHHhcCCCCeEEEEEEEcCCCcEEEEEEEecccChHHHHHHHHHHHHHHHCCCCchhhhheeeecCCEEEEEEEec
Confidence            5777889999999999999976 68899999876543 345567899999999999999999999999999999999999


Q ss_pred             CCCCCC-----------HHHHHHHHHHHH--------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceeeee
Q 047066          183 KLPTIS-----------WEVRIRIAAETA--------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTM  237 (256)
Q Consensus       183 ~~~~l~-----------~~~~~~~~~~i~--------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~~  237 (256)
                      .+++|.           ......++.+++              +||+|+||++++++.+||+|||.+.........   .
T Consensus        82 ~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~~i~H~dl~~~ni~~~~~~~~~l~d~g~~~~~~~~~~~---~  158 (265)
T cd06605          82 DGGSLDKILKEVQGRIPERILGKIAVAVLKGLTYLHEKHKIIHRDVKPSNILVNSRGQIKLCDFGVSGQLVNSLAK---T  158 (265)
T ss_pred             CCCcHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHcCCCCeecCCCCHHHEEECCCCCEEEeecccchhhHHHHhh---c
Confidence            976553           223333333333              699999999999999999999998765432211   1


Q ss_pred             eeecccc----cccccCCCCCCC
Q 047066          238 VQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       238 ~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      ..|++.|    ...+..++.++|
T Consensus       159 ~~~~~~y~~PE~~~~~~~~~~~D  181 (265)
T cd06605         159 FVGTSSYMAPERIQGNDYSVKSD  181 (265)
T ss_pred             ccCChhccCHHHHcCCCCCchhh
Confidence            4477777    445556677666

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity

>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]

Probab=99.76  E-value=6.9e-19  Score=163.87  Aligned_cols=72  Identities=26%  Similarity=0.426  Sum_probs=60.8

Q ss_pred             HhhcCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC-hhHHHHHHHHHHHHHhCCCCcccceeeEEEE
Q 047066          100 KIATNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY-QSQIEQCINKVVVLSQINHRNVVGLLGCCLE  171 (256)
Q Consensus       100 ~~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~  171 (256)
                      .....+|+.+++||+|+||.||+++.+ ||+.+|||++.... ........+|+..|++|+|||||+++..|.+
T Consensus       475 SRY~~DFEEL~lLGkGGFG~VvkVRNKlDGr~YAIKKIpl~~s~~~~skI~rEVk~LArLnHpNVVRYysAWVE  548 (1351)
T KOG1035|consen  475 SRYLNDFEELELLGKGGFGSVVKVRNKLDGREYAIKKIPLKASDKLYSKILREVKLLARLNHPNVVRYYSAWVE  548 (1351)
T ss_pred             hhHhhhhHHHHHhcCCCCceEEEEeecccchhhhhhhccCchHHHHHHHHHHHHHHHhhcCCcceeeeehhhhc
Confidence            344567888999999999999999987 89999999987653 3445778999999999999999999887643

>cd07845 STKc_CDK10 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10

Probab=99.76  E-value=1e-17  Score=141.94  Aligned_cols=153  Identities=23%  Similarity=0.297  Sum_probs=114.4

Q ss_pred             cCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC--hhHHHHHHHHHHHHHhCCCCcccceeeEEEEC--CEEEE
Q 047066          103 TNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY--QSQIEQCINKVVVLSQINHRNVVGLLGCCLET--EVPLL  177 (256)
Q Consensus       103 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~--~~~~l  177 (256)
                      .++|++.+.||+|+||.||+|..+ ++..||+|.+....  ......+.+|+.++++++|+|++++++++...  +..++
T Consensus         6 ~~~y~~~~~ig~g~~~~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~l   85 (309)
T cd07845           6 VTEFEKLNRIGEGTYGIVYRARDTTSGEIVALKKVRMDNERDGIPISSLREITLLLNLRHPNIVELKEVVVGKHLDSIFL   85 (309)
T ss_pred             ccceeEeeeeeecCCEEEEEEEECCCCcEEEEEEEEeccCCCCCcchhhHHHHHHHhCCCCCCcceEEEEecCCCCeEEE
Confidence            467899999999999999999975 68899999876432  22223567899999999999999999998764  56899


Q ss_pred             EEecCCC----------CCCCHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCcee
Q 047066          178 VNEFVKL----------PTISWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQL  234 (256)
Q Consensus       178 v~e~~~~----------~~l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~  234 (256)
                      +|||+++          ..+++.....++.|++             +||+|+||++++++.+||+|||++......... 
T Consensus        86 v~e~~~~~l~~~l~~~~~~l~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~nil~~~~~~~kL~dfg~~~~~~~~~~~-  164 (309)
T cd07845          86 VMEYCEQDLASLLDNMPTPFSESQVKCLMLQLLRGLQYLHENFIIHRDLKVSNLLLTDKGCLKIADFGLARTYGLPAKP-  164 (309)
T ss_pred             EEecCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEECCCCCEEECccceeeecCCccCC-
Confidence            9999875          3345666666666655             699999999999999999999999877543222 


Q ss_pred             eeeeeecccc----cc-cccCCCCCCC
Q 047066          235 STMVQGTLGY----YL-HTSQGTLNKE  256 (256)
Q Consensus       235 ~~~~~Gt~~y----~~-~~~~~t~ksD  256 (256)
                      .+...+++.|    .+ ....++.++|
T Consensus       165 ~~~~~~~~~y~aPE~~~~~~~~~~~~D  191 (309)
T cd07845         165 MTPKVVTLWYRAPELLLGCTTYTTAID  191 (309)
T ss_pred             CCcccccccccChhhhcCCCCcCchHH
Confidence            1222356666    22 2234566665

Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing

>cd06635 STKc_TAO1 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1

Probab=99.76  E-value=2.4e-17  Score=140.23  Aligned_cols=148  Identities=26%  Similarity=0.344  Sum_probs=114.7

Q ss_pred             CCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC---hhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEE
Q 047066          104 NNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY---QSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVN  179 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~  179 (256)
                      ..|...+.||+|+||.||++... ++..+++|.+....   ......+.+|+.+++.++|||++++++++...+..+++|
T Consensus        25 ~~f~~~~~lg~G~~~~v~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~  104 (317)
T cd06635          25 KLFTDLREIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEVKFLQRIKHPNSIEYKGCYLREHTAWLVM  104 (317)
T ss_pred             hhhhhhheeccCCCeEEEEEEEcCCCcEEEEEEEecCCCCchHHHHHHHHHHHHHHhCCCCCEEEEEEEEeeCCeEEEEE
Confidence            44777889999999999999964 68899999875432   234467889999999999999999999999999999999


Q ss_pred             ecCCC----------CCCCHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceeee
Q 047066          180 EFVKL----------PTISWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLST  236 (256)
Q Consensus       180 e~~~~----------~~l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~  236 (256)
                      ||+.+          +.+++.....++.+++             +||+|+||+++.++.+||+|||++......     .
T Consensus       105 e~~~g~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lH~~~i~H~dL~p~Nil~~~~~~~kl~dfg~~~~~~~~-----~  179 (317)
T cd06635         105 EYCLGSASDLLEVHKKPLQEVEIAAITHGALQGLAYLHSHNMIHRDIKAGNILLTEPGQVKLADFGSASIASPA-----N  179 (317)
T ss_pred             eCCCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCcccEEECCCCCEEEecCCCccccCCc-----c
Confidence            99975          2245555555555544             699999999999999999999998765432     1


Q ss_pred             eeeecccc----cc---cccCCCCCCC
Q 047066          237 MVQGTLGY----YL---HTSQGTLNKE  256 (256)
Q Consensus       237 ~~~Gt~~y----~~---~~~~~t~ksD  256 (256)
                      ...|++.|    ++   ..+.++.++|
T Consensus       180 ~~~~~~~y~aPE~~~~~~~~~~~~~~D  206 (317)
T cd06635         180 SFVGTPYWMAPEVILAMDEGQYDGKVD  206 (317)
T ss_pred             cccCCccccChhhhhcCCCCCCCcccc
Confidence            23467777    22   3456777776

Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuron

>cd05122 PKc_STE Catalytic domain of STE family Protein Kinases

Probab=99.76  E-value=3.6e-17  Score=133.52  Aligned_cols=150  Identities=25%  Similarity=0.370  Sum_probs=119.6

Q ss_pred             CCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEecCC
Q 047066          105 NYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEFVK  183 (256)
Q Consensus       105 ~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~  183 (256)
                      .|+..+.||+|++|.||++... ++..+++|............+.+|+..++.++|+|++++.+.+...+..++++||++
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~l~~e~~~   80 (253)
T cd05122           1 LFEILEKIGKGGFGEVYKARHKRTGKEVAIKVIKLESKEKKEKIINEIQILKKCKHPNIVKYYGSYLKKDELWIVMEFCS   80 (253)
T ss_pred             CceeeeeeccCCceEEEEEEECCCCcEEEEEEecccchhHHHHHHHHHHHHHhCCCCCEeEEEEEEecCCeEEEEEecCC
Confidence            3677789999999999999975 688999999876655556789999999999999999999999999999999999998


Q ss_pred             CCCC-----------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceeeeeee
Q 047066          184 LPTI-----------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQ  239 (256)
Q Consensus       184 ~~~l-----------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~~~~  239 (256)
                      +++|           ++.....++.+++             +||+|+||++++++.++|+|||.+........  .....
T Consensus        81 ~~~L~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~i~h~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~--~~~~~  158 (253)
T cd05122          81 GGSLKDLLKSTNQTLTESQIAYVCKELLKGLEYLHSNGIIHRDIKAANILLTSDGEVKLIDFGLSAQLSDTKA--RNTMV  158 (253)
T ss_pred             CCcHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhcCCEecCCCCHHHEEEccCCeEEEeecccccccccccc--cccee
Confidence            6554           4444444555544             59999999999999999999999987754432  22345


Q ss_pred             ecccc----cccccCCCCCCC
Q 047066          240 GTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       240 Gt~~y----~~~~~~~t~ksD  256 (256)
                      |+..|    ....+.++.++|
T Consensus       159 ~~~~~~~PE~~~~~~~~~~~D  179 (253)
T cd05122         159 GTPYWMAPEVINGKPYDYKAD  179 (253)
T ss_pred             cCCcccCHHHHcCCCCCcccc
Confidence            77777    444555677776

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core

>cd05047 PTKc_Tie Catalytic domain of Tie Protein Tyrosine Kinases

Probab=99.76  E-value=1.1e-17  Score=138.95  Aligned_cols=145  Identities=27%  Similarity=0.412  Sum_probs=106.0

Q ss_pred             ceeeeeCceEEEEEEECC-Cc--EEEEEEeccc-ChhHHHHHHHHHHHHHhC-CCCcccceeeEEEECCEEEEEEecCCC
Q 047066          110 RMIGRGGYGTVFLGSLSD-NK--AIAIKKSRIV-YQSQIEQCINKVVVLSQI-NHRNVVGLLGCCLETEVPLLVNEFVKL  184 (256)
Q Consensus       110 ~~lg~G~~g~V~~~~~~~-~~--~vavK~~~~~-~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~lv~e~~~~  184 (256)
                      +.||+|+||.||+|..++ +.  .+++|..... .....+.+.+|+.++.++ +||||+++++++...+..+++|||+++
T Consensus         1 ~~lg~g~~g~v~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~lv~e~~~~   80 (270)
T cd05047           1 DVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLAIEYAPH   80 (270)
T ss_pred             CcCCCCCCceEEEEEEcCCCCeeEEEEEEccccCCHHHHHHHHHHHHHHHhhccCCCeeeEEEEEecCCCceEEEEeCCC
Confidence            368999999999999753 43  5688877643 344556789999999999 899999999999999999999999987


Q ss_pred             CCC--------------------------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCce
Q 047066          185 PTI--------------------------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASK  225 (256)
Q Consensus       185 ~~l--------------------------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~  225 (256)
                      ++|                          ++.....++.+++             +||||+|||+++++.+||+|||++.
T Consensus        81 ~~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~al~~lH~~~i~H~dikp~nili~~~~~~kl~dfgl~~  160 (270)
T cd05047          81 GNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQKQFIHRDLAARNILVGENYVAKIADFGLSR  160 (270)
T ss_pred             CcHHHHHHhccccccccccccccCCcCCCCHHHHHHHHHHHHHHHHHHHHCCEeecccccceEEEcCCCeEEECCCCCcc
Confidence            654                          3344445555444             6999999999999999999999986


Q ss_pred             ecCCCCceeeeeeeecccc----cccccCCCCCCC
Q 047066          226 LVPIDETQLSTMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       226 ~~~~~~~~~~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      ......  ......+++.|    ++....++.++|
T Consensus       161 ~~~~~~--~~~~~~~~~~y~apE~~~~~~~~~~~D  193 (270)
T cd05047         161 GQEVYV--KKTMGRLPVRWMAIESLNYSVYTTNSD  193 (270)
T ss_pred             ccchhh--hccCCCCccccCChHHHccCCCCchhh
Confidence            432111  11111234445    444556677766

Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific l

>cd08220 STKc_Nek8 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8

Probab=99.76  E-value=2.7e-17  Score=135.13  Aligned_cols=150  Identities=26%  Similarity=0.386  Sum_probs=116.5

Q ss_pred             CCcccceeeeeCceEEEEEEEC-CCcEEEEEEeccc--ChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEec
Q 047066          105 NYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIV--YQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEF  181 (256)
Q Consensus       105 ~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~  181 (256)
                      +|+..+.||+|++|.||++... ++..+++|.+...  .....+.+.+|+.+++.++|||++++++.+...+..++++||
T Consensus         1 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~   80 (256)
T cd08220           1 KYEKIRVVGRGAFGIVHLCRRKADQKLVIIKQIPVEQMTKDERLAAQNECQVLKLLSHPNIIEYYENFLEDKALMIVMEY   80 (256)
T ss_pred             CceEEEEecccCceEEEEEEEcCCCcEEEEEEEeccccccHHHHHHHHHHHHHhhCCCCchhheeeeEecCCEEEEEEec
Confidence            4778899999999999999864 6889999987543  234457889999999999999999999999999999999999


Q ss_pred             CCCCCC------------CHHHHHHHHHHHH-------------hccCCCcEEEcCC-CcEEEEecCCceecCCCCceee
Q 047066          182 VKLPTI------------SWEVRIRIAAETA-------------EDIKSINILLDDN-YTTKVCDFGASKLVPIDETQLS  235 (256)
Q Consensus       182 ~~~~~l------------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~-~~~ki~DFGla~~~~~~~~~~~  235 (256)
                      +++++|            ++.....++.+++             +||+|+||+++++ ..+||+|||++........  .
T Consensus        81 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~i~h~dl~~~nil~~~~~~~~~l~d~~~~~~~~~~~~--~  158 (256)
T cd08220          81 APGGTLAEYIQKRCNSLLDEDTILHFFVQILLALHHVHTKLILHRDLKTQNILLDKHKMVVKIGDFGISKILSSKSK--A  158 (256)
T ss_pred             CCCCCHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCCEEEEccCCCceecCCCcc--c
Confidence            987654            4444455555544             5999999999865 4689999999987754322  1


Q ss_pred             eeeeecccc----cccccCCCCCCC
Q 047066          236 TMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       236 ~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      ....|++.|    ...+..++.++|
T Consensus       159 ~~~~~~~~y~aPE~~~~~~~~~~~D  183 (256)
T cd08220         159 YTVVGTPCYISPELCEGKPYNQKSD  183 (256)
T ss_pred             cccccCCcccCchhccCCCCCcccc
Confidence            224578788    455566677776

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with

>cd07852 STKc_MAPK15 Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15

Probab=99.76  E-value=8.5e-18  Score=144.18  Aligned_cols=154  Identities=23%  Similarity=0.314  Sum_probs=115.3

Q ss_pred             cCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEeccc--ChhHHHHHHHHHHHHHhC-CCCcccceeeEEEE--CCEEE
Q 047066          103 TNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIV--YQSQIEQCINKVVVLSQI-NHRNVVGLLGCCLE--TEVPL  176 (256)
Q Consensus       103 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~--~~~~~  176 (256)
                      .++|++.+.||+|+||.||+|... ++..+++|++...  .......+.+|+.+++++ +||||+++++++..  ....+
T Consensus         6 ~~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~E~~~l~~l~~h~ni~~~~~~~~~~~~~~~~   85 (337)
T cd07852           6 LRKYEILQKLGKGAYGIVWKAIDRRTKEVVALKKIFDAFRNATDAQRTFREIMFLQELGDHPNIVKLLNVIKAENDKDIY   85 (337)
T ss_pred             hhHHHHhHhhcCCCCeeEEEEEEcCCCeEEEEEeeccccCcchhhhhhhHHHHHHHHhcCCCCccceeeeeccCCCceEE
Confidence            367888999999999999999975 6889999987542  233445678899999999 99999999999865  34689


Q ss_pred             EEEecCCC--------CCCCHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCce--
Q 047066          177 LVNEFVKL--------PTISWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQ--  233 (256)
Q Consensus       177 lv~e~~~~--------~~l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~--  233 (256)
                      +++||+.+        +.+++.....++.+++             +||+|+||+++.++.+||+|||+++.+......  
T Consensus        86 lv~e~~~~~L~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~i~H~dl~p~nill~~~~~~kl~d~g~~~~~~~~~~~~~  165 (337)
T cd07852          86 LVFEYMETDLHAVIRANILEDVHKRYIMYQLLKALKYIHSGNVIHRDLKPSNILLNSDCRVKLADFGLARSLSELEENPE  165 (337)
T ss_pred             EEecccccCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEEcCCCcEEEeeccchhcccccccccc
Confidence            99999874        2345555555555554             699999999999999999999999876433221  


Q ss_pred             --eeeeeeecccc----cc-cccCCCCCCC
Q 047066          234 --LSTMVQGTLGY----YL-HTSQGTLNKE  256 (256)
Q Consensus       234 --~~~~~~Gt~~y----~~-~~~~~t~ksD  256 (256)
                        ......||+.|    .+ ....++.++|
T Consensus       166 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~sD  195 (337)
T cd07852         166 NPVLTDYVATRWYRAPEILLGSTRYTKGVD  195 (337)
T ss_pred             CcchhcccccccccCceeeeccccccccch
Confidence              12234577777    22 3345667776

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimul

>cd08225 STKc_Nek5 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5

Probab=99.76  E-value=9.8e-18  Score=137.84  Aligned_cols=151  Identities=23%  Similarity=0.336  Sum_probs=116.5

Q ss_pred             CCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC--hhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEec
Q 047066          105 NYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY--QSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEF  181 (256)
Q Consensus       105 ~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~  181 (256)
                      +|++.+.||+|+||.||++..+ ++..+++|.+....  ....+.+.+|+.+++.++|+|++++++.+...+..++++||
T Consensus         1 ~~~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~~~h~~i~~~~~~~~~~~~~~lv~e~   80 (257)
T cd08225           1 RYEIIKKIGEGSFGKIYLAKAKSDSEHCVIKEIDLTKMPVKEKEASKKEVILLAKMKHPNIVTFFASFQENGRLFIVMEY   80 (257)
T ss_pred             CceEEEEecCCCcceEEEEEEcCCCceEEEEEeeHhhccchhhHHHHHHHHHHHhCCCCChhhhhheeccCCeEEEEEec
Confidence            4778899999999999999975 57889999875432  23446788999999999999999999999999999999999


Q ss_pred             CCCCCC------------CHHHHHHHHHHHH-------------hccCCCcEEEcCCC-cEEEEecCCceecCCCCceee
Q 047066          182 VKLPTI------------SWEVRIRIAAETA-------------EDIKSINILLDDNY-TTKVCDFGASKLVPIDETQLS  235 (256)
Q Consensus       182 ~~~~~l------------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~-~~ki~DFGla~~~~~~~~~~~  235 (256)
                      +.+++|            ++.....++.+++             +||+|+||++++++ .+||+|||.+.....+... .
T Consensus        81 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~i~H~dl~~~nil~~~~~~~~~l~d~~~~~~~~~~~~~-~  159 (257)
T cd08225          81 CDGGDLMKRINRQRGVLFSEDQILSWFVQISLGLKHIHDRKILHRDIKSQNIFLSKNGMVAKLGDFGIARQLNDSMEL-A  159 (257)
T ss_pred             CCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHCCcccccCCHHHEEEcCCCCeEEecccccchhccCCccc-c
Confidence            987553            4455555555544             59999999999885 5799999999876543322 2


Q ss_pred             eeeeecccc----cccccCCCCCCC
Q 047066          236 TMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       236 ~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      ....|++.|    ...++.++.++|
T Consensus       160 ~~~~~~~~~~ape~~~~~~~~~~~D  184 (257)
T cd08225         160 YTCVGTPYYLSPEICQNRPYNNKTD  184 (257)
T ss_pred             cccCCCccccCHHHHcCCCCCchhh
Confidence            223477777    444556777776

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown.

>cd05110 PTKc_HER4 Catalytic domain of the Protein Tyrosine Kinase, HER4

Probab=99.75  E-value=7.8e-18  Score=142.34  Aligned_cols=152  Identities=20%  Similarity=0.388  Sum_probs=110.9

Q ss_pred             CCCcccceeeeeCceEEEEEEEC-CCc----EEEEEEecccC-hhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEE
Q 047066          104 NNYAYDRMIGRGGYGTVFLGSLS-DNK----AIAIKKSRIVY-QSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLL  177 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~V~~~~~~-~~~----~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~l  177 (256)
                      ++|+..+.||+|+||.||+|.+. ++.    .+++|.+.... ......+.+|+.+++.++||||+++++++... ..++
T Consensus         7 ~~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~l~h~niv~~~~~~~~~-~~~~   85 (303)
T cd05110           7 TELKRVKVLGSGAFGTVYKGIWVPEGETVKIPVAIKILNETTGPKANVEFMDEALIMASMDHPHLVRLLGVCLSP-TIQL   85 (303)
T ss_pred             hhceeccccccCCCccEEEEEEecCCCcceeeEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCcccEEEEEcCC-Ccee
Confidence            56778889999999999999864 343    57888776543 33345688999999999999999999998764 4678


Q ss_pred             EEecCCCCCC-----------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCce
Q 047066          178 VNEFVKLPTI-----------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQ  233 (256)
Q Consensus       178 v~e~~~~~~l-----------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~  233 (256)
                      ++||+++|++           ++.....++.|++             +||||+||++++++.+||+|||+++.+......
T Consensus        86 v~e~~~~g~l~~~~~~~~~~~~~~~~~~~~~qi~~~L~~LH~~~ivH~dikp~Nill~~~~~~kL~Dfg~~~~~~~~~~~  165 (303)
T cd05110          86 VTQLMPHGCLLDYVHEHKDNIGSQLLLNWCVQIAKGMMYLEERRLVHRDLAARNVLVKSPNHVKITDFGLARLLEGDEKE  165 (303)
T ss_pred             eehhcCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHhhcCeeccccccceeeecCCCceEEccccccccccCcccc
Confidence            9999988654           3444455555544             699999999999999999999999876533221


Q ss_pred             e-eeeeeecccc----cccccCCCCCCC
Q 047066          234 L-STMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       234 ~-~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      . .....++..|    .+.+..++.++|
T Consensus       166 ~~~~~~~~~~~y~~PE~~~~~~~~~~~D  193 (303)
T cd05110         166 YNADGGKMPIKWMALECIHYRKFTHQSD  193 (303)
T ss_pred             cccCCCccccccCCHHHhccCCCChHHH
Confidence            1 1122345566    445566666665

Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as bindin

>cd06614 STKc_PAK Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

Probab=99.75  E-value=2.4e-17  Score=138.04  Aligned_cols=153  Identities=25%  Similarity=0.330  Sum_probs=120.6

Q ss_pred             hcCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEe
Q 047066          102 ATNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNE  180 (256)
Q Consensus       102 ~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e  180 (256)
                      ..+.|+..+.+|+|++|.||++..+ ++..+++|.+..... ..+.+.+|++.++.++|+|++++++.+...+..++++|
T Consensus        17 ~~~~~~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~-~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e   95 (286)
T cd06614          17 PRELYKNLEKIGEGASGEVYKATDRATGKEVAIKKMRLRKQ-NKELIINEILIMKDCKHPNIVDYYDSYLVGDELWVVME   95 (286)
T ss_pred             ccccchHhHhccCCCCeEEEEEEEccCCcEEEEEEEecCch-hHHHHHHHHHHHHHCCCCCeeEEEEEEEECCEEEEEEe
Confidence            3466888899999999999999976 688999998875544 45778899999999999999999999999999999999


Q ss_pred             cCCCCCC-----------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceeee
Q 047066          181 FVKLPTI-----------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLST  236 (256)
Q Consensus       181 ~~~~~~l-----------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~  236 (256)
                      |+++++|           ++.....++.+++             +||+|+||+++.++.++|+|||++......... ..
T Consensus        96 ~~~~~~L~~~l~~~~~~l~~~~~~~i~~~i~~~L~~lH~~gi~H~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~~-~~  174 (286)
T cd06614          96 YMDGGSLTDIITQNFVRMNEPQIAYVCREVLQGLEYLHSQNVIHRDIKSDNILLSKDGSVKLADFGFAAQLTKEKSK-RN  174 (286)
T ss_pred             ccCCCcHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHhCCeeeCCCChhhEEEcCCCCEEECccchhhhhccchhh-hc
Confidence            9987544           4555555666555             599999999999999999999998765433221 12


Q ss_pred             eeeecccc----cccccCCCCCCC
Q 047066          237 MVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       237 ~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      ...|++.|    .+.+..++.++|
T Consensus       175 ~~~~~~~y~~PE~~~~~~~~~~~D  198 (286)
T cd06614         175 SVVGTPYWMAPEVIKRKDYGPKVD  198 (286)
T ss_pred             cccCCcccCCHhHhcCCCCCCccc
Confidence            23467777    444566777776

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two grou

>cd05060 PTKc_Syk_like Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases

Probab=99.75  E-value=2.1e-17  Score=136.16  Aligned_cols=146  Identities=21%  Similarity=0.353  Sum_probs=108.7

Q ss_pred             ceeeeeCceEEEEEEEC-C---CcEEEEEEecccCh-hHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEecCCC
Q 047066          110 RMIGRGGYGTVFLGSLS-D---NKAIAIKKSRIVYQ-SQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEFVKL  184 (256)
Q Consensus       110 ~~lg~G~~g~V~~~~~~-~---~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~~  184 (256)
                      +.||+|+||.||+|... .   +..+++|....... ...+.+.+|+.+++.++|||++++++++.. +..+++|||+++
T Consensus         1 ~~ig~G~~g~v~~~~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~-~~~~~v~e~~~~   79 (257)
T cd05060           1 KELGHGNFGSVVKGVYLMKSGKEVEVAVKTLKQEHIAAGKKEFLREASVMAQLDHPCIVRLIGVCKG-EPLMLVMELAPL   79 (257)
T ss_pred             CccCccCceeEEEeEeeccCCCcceEEEEecccccchHHHHHHHHHHHHHHhcCCCCeeeEEEEEcC-CceEEEEEeCCC
Confidence            46899999999999753 2   26899998865443 345678999999999999999999998764 567999999987


Q ss_pred             CCC----------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceeeee--ee
Q 047066          185 PTI----------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTM--VQ  239 (256)
Q Consensus       185 ~~l----------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~~--~~  239 (256)
                      ++|          ++.....++.+++             +||||+|||++.++.+||+|||+++.+..........  ..
T Consensus        80 ~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lh~~~i~H~di~p~nili~~~~~~kl~df~~~~~~~~~~~~~~~~~~~~  159 (257)
T cd05060          80 GPLLKYLKKRREIPVSDLKELAHQVAMGMAYLESKHFVHRDLAARNVLLVNRHQAKISDFGMSRALGAGSDYYRATTAGR  159 (257)
T ss_pred             CcHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHhhcCeeccCcccceEEEcCCCcEEeccccccceeecCCcccccccCcc
Confidence            654          4555566665555             5999999999999999999999998775443322111  12


Q ss_pred             ecccc----cccccCCCCCCC
Q 047066          240 GTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       240 Gt~~y----~~~~~~~t~ksD  256 (256)
                      ++..|    ...++.++.++|
T Consensus       160 ~~~~y~aPE~~~~~~~~~~~D  180 (257)
T cd05060         160 WPLKWYAPECINYGKFSSKSD  180 (257)
T ss_pred             ccccccCHHHhcCCCCCccch
Confidence            33456    455666777776

Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, mi

>cd00192 PTKc Catalytic domain of Protein Tyrosine Kinases

Probab=99.75  E-value=1.9e-17  Score=136.05  Aligned_cols=147  Identities=26%  Similarity=0.394  Sum_probs=113.1

Q ss_pred             ceeeeeCceEEEEEEECC----CcEEEEEEecccChh-HHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEecCCC
Q 047066          110 RMIGRGGYGTVFLGSLSD----NKAIAIKKSRIVYQS-QIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEFVKL  184 (256)
Q Consensus       110 ~~lg~G~~g~V~~~~~~~----~~~vavK~~~~~~~~-~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~~  184 (256)
                      +.||+|+||.||++....    +..+++|.+...... ..+.+.+|+..+..++|+|++++++++......+++|||+++
T Consensus         1 ~~ig~g~~g~v~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~   80 (262)
T cd00192           1 KKLGEGAFGEVYKGKLKGKDGKTTEVAVKTLKEDASEEERKDFLKEARVMKKLGHPNVVRLLGVCTEEEPLYLVLEYMEG   80 (262)
T ss_pred             CccccCCceEEEEEEEecCCCCCceEEeEeeccccchhHHHHHHHHHHHHhhcCCCChheeeeeecCCCceEEEEEeccC
Confidence            468999999999999653    788999988765433 367889999999999999999999999999999999999965


Q ss_pred             CCC-------------------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCc
Q 047066          185 PTI-------------------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDET  232 (256)
Q Consensus       185 ~~l-------------------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~  232 (256)
                      ++|                   ++.....++.+++             +||+|+||++++++.+||+|||.+........
T Consensus        81 ~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH~~~i~H~di~p~nili~~~~~~~l~dfg~~~~~~~~~~  160 (262)
T cd00192          81 GDLLDYLRKSRPVFPSPEKSTLSLKDLLSFAIQIAKGMEYLASKKFVHRDLAARNCLVGEDLVVKISDFGLSRDVYDDDY  160 (262)
T ss_pred             CcHHHHHhhccccccccccccCCHHHHHHHHHHHHHHHHHHHcCCcccCccCcceEEECCCCcEEEcccccccccccccc
Confidence            543                   4444555555544             59999999999999999999999987754331


Q ss_pred             -eeeeeeeecccc----cccccCCCCCCC
Q 047066          233 -QLSTMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       233 -~~~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                       .......+++.|    ......++.++|
T Consensus       161 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~D  189 (262)
T cd00192         161 YRKKTGGKLPIRWMAPESLKDGIFTSKSD  189 (262)
T ss_pred             cccccCCCcCccccCHHHhccCCcchhhc
Confidence             112223466677    444456677766

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligan

>cd06618 PKc_MKK7 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7

Probab=99.75  E-value=1.5e-17  Score=140.07  Aligned_cols=156  Identities=19%  Similarity=0.287  Sum_probs=115.9

Q ss_pred             HHhhcCCCcccceeeeeCceEEEEEEECC-CcEEEEEEecccC-hhHHHHHHHHHHHHHhC-CCCcccceeeEEEECCEE
Q 047066           99 LKIATNNYAYDRMIGRGGYGTVFLGSLSD-NKAIAIKKSRIVY-QSQIEQCINKVVVLSQI-NHRNVVGLLGCCLETEVP  175 (256)
Q Consensus        99 ~~~~~~~~~~~~~lg~G~~g~V~~~~~~~-~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~  175 (256)
                      +....++|++.+.||+|++|.||++..+. ++.+|+|.++... ......+..|+.++.+. .||||+++++++...+..
T Consensus        10 ~~~~~~~~~~~~~lg~g~~~~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~   89 (296)
T cd06618          10 YPADLNDLENLGEIGSGTCGQVYKMRFKKTGHVMAVKQMRRTGNKEENKRILMDLDVVLKSHDCPYIVKCYGYFITDSDV   89 (296)
T ss_pred             ccCCcchheeeeEeeccCCeEEEEEEECCCCeEEEEEEEeccCChHHHHHHHHHHHHHHhccCCCchHhhheeeecCCeE
Confidence            34455778899999999999999999864 8899999886543 33445677788777777 599999999999999999


Q ss_pred             EEEEecCCC----------CCCCHHHHHHHHHHHH--------------hccCCCcEEEcCCCcEEEEecCCceecCCCC
Q 047066          176 LLVNEFVKL----------PTISWEVRIRIAAETA--------------EDIKSINILLDDNYTTKVCDFGASKLVPIDE  231 (256)
Q Consensus       176 ~lv~e~~~~----------~~l~~~~~~~~~~~i~--------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~  231 (256)
                      +++|||+.+          +.+++.....++.+++              +||+|+||++++++.+||+|||++..+....
T Consensus        90 ~~v~e~~~~~l~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~~~~i~H~dl~p~nill~~~~~~kL~dfg~~~~~~~~~  169 (296)
T cd06618          90 FICMELMSTCLDKLLKRIQGPIPEDILGKMTVAIVKALHYLKEKHGVIHRDVKPSNILLDASGNVKLCDFGISGRLVDSK  169 (296)
T ss_pred             EEEeeccCcCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhCCEecCCCcHHHEEEcCCCCEEECccccchhccCCC
Confidence            999999864          3455555555555544              6999999999999999999999998764322


Q ss_pred             ceeeeeeeecccc----cccc----cCCCCCCC
Q 047066          232 TQLSTMVQGTLGY----YLHT----SQGTLNKE  256 (256)
Q Consensus       232 ~~~~~~~~Gt~~y----~~~~----~~~t~ksD  256 (256)
                      ..  ....|++.|    .+.+    +.++.++|
T Consensus       170 ~~--~~~~~~~~y~aPE~~~~~~~~~~~~~~~D  200 (296)
T cd06618         170 AK--TRSAGCAAYMAPERIDPPDPNPKYDIRAD  200 (296)
T ss_pred             cc--cCCCCCccccCHhhcCCCCCccccccchh
Confidence            21  122366666    2222    23666766

Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates it

>cd08215 STKc_Nek Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

Probab=99.75  E-value=4.7e-17  Score=133.44  Aligned_cols=151  Identities=26%  Similarity=0.372  Sum_probs=118.8

Q ss_pred             CCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC--hhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEec
Q 047066          105 NYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY--QSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEF  181 (256)
Q Consensus       105 ~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~  181 (256)
                      +|++.+.||+|++|.||++... ++..+++|.+....  ......+.+|++.++.++|||++++.+.+...+..++++||
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~~~~~lv~e~   80 (258)
T cd08215           1 KYEIIKQIGKGSFGKVYLVRRKSDGKLYVLKEIDLSNMSEKEREDALNEVKILKKLNHPNIIKYYESFEEKGKLCIVMEY   80 (258)
T ss_pred             CceEEeeeccCCCeEEEEEEEcCCCcEEEEEEeecccCChHHHHHHHHHHHHHHhcCCCChhheEEEEecCCEEEEEEEe
Confidence            4778889999999999999975 68899999886543  35557789999999999999999999999999999999999


Q ss_pred             CCCCCC--------------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCcee
Q 047066          182 VKLPTI--------------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQL  234 (256)
Q Consensus       182 ~~~~~l--------------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~  234 (256)
                      +++++|              ++.....++.+++             +||+|+||++++++.++|+|||++....... ..
T Consensus        81 ~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~H~dl~~~nil~~~~~~~~l~d~~~~~~~~~~~-~~  159 (258)
T cd08215          81 ADGGDLSQKIKKQKKEGKPFPEEQILDWFVQLCLALKYLHSRKILHRDIKPQNIFLTSNGLVKLGDFGISKVLSSTV-DL  159 (258)
T ss_pred             cCCCcHHHHHHHhhccCCCcCHHHHHHHHHHHHHHHHHHHhCCEecccCChHHeEEcCCCcEEECCccceeecccCc-ce
Confidence            987665              3333444555544             5999999999999999999999998765443 22


Q ss_pred             eeeeeecccc----cccccCCCCCCC
Q 047066          235 STMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       235 ~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      .....|++.|    ......++.++|
T Consensus       160 ~~~~~~~~~y~~pe~~~~~~~~~~~D  185 (258)
T cd08215         160 AKTVVGTPYYLSPELCQNKPYNYKSD  185 (258)
T ss_pred             ecceeeeecccChhHhccCCCCcccc
Confidence            2334578777    445556677766

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They

>cd07858 STKc_TEY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants

Probab=99.75  E-value=1.3e-17  Score=143.05  Aligned_cols=152  Identities=26%  Similarity=0.344  Sum_probs=115.4

Q ss_pred             CCCcccceeeeeCceEEEEEEEC-CCcEEEEEEeccc--ChhHHHHHHHHHHHHHhCCCCcccceeeEEEEC-----CEE
Q 047066          104 NNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIV--YQSQIEQCINKVVVLSQINHRNVVGLLGCCLET-----EVP  175 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~-----~~~  175 (256)
                      ++|.+.+.||+|+||.||++... ++..|++|.+...  .......+.+|+.+++.++||||+++++++...     ...
T Consensus         5 ~~y~~~~~lg~G~~~~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~ni~~~~~~~~~~~~~~~~~~   84 (337)
T cd07858           5 TKYVPIKPIGRGAYGIVCSAKNSETNEKVAIKKIANAFDNRIDAKRTLREIKLLRHLDHENVIAIKDIMPPPHREAFNDV   84 (337)
T ss_pred             cceeEEEEeccCCCeEEEEEEecCCCCeEEEEEecccccccchhHHHHHHHHHHHhcCCCCccchHHheecccccccCcE
Confidence            57889999999999999999864 6889999987643  223345677899999999999999999988653     348


Q ss_pred             EEEEecCCC---------CCCCHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCce
Q 047066          176 LLVNEFVKL---------PTISWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQ  233 (256)
Q Consensus       176 ~lv~e~~~~---------~~l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~  233 (256)
                      ++++||+.+         +.++......++.|++             +||+|+||+++.++.+||+|||+++...... .
T Consensus        85 ~lv~e~~~~~L~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~i~H~dlkp~Nil~~~~~~~kL~Dfg~~~~~~~~~-~  163 (337)
T cd07858          85 YIVYELMDTDLHQIIRSSQTLSDDHCQYFLYQLLRGLKYIHSANVLHRDLKPSNLLLNANCDLKICDFGLARTTSEKG-D  163 (337)
T ss_pred             EEEEeCCCCCHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHEEEcCCCCEEECcCccccccCCCc-c
Confidence            999999964         4456666666666655             6999999999999999999999998764432 2


Q ss_pred             eeeeeeecccc----cc-cccCCCCCCC
Q 047066          234 LSTMVQGTLGY----YL-HTSQGTLNKE  256 (256)
Q Consensus       234 ~~~~~~Gt~~y----~~-~~~~~t~ksD  256 (256)
                      ......|+..|    .+ ....++.++|
T Consensus       164 ~~~~~~~~~~y~aPE~~~~~~~~~~~~D  191 (337)
T cd07858         164 FMTEYVVTRWYRAPELLLNCSEYTTAID  191 (337)
T ss_pred             cccccccccCccChHHHhcCCCCCCccc
Confidence            22233477777    22 2345777776

Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activati

>cd05577 STKc_GRK Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase

Probab=99.75  E-value=1.3e-17  Score=139.03  Aligned_cols=143  Identities=23%  Similarity=0.282  Sum_probs=108.0

Q ss_pred             eeeeCceEEEEEEEC-CCcEEEEEEecccC---hhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEecCCCCCC
Q 047066          112 IGRGGYGTVFLGSLS-DNKAIAIKKSRIVY---QSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEFVKLPTI  187 (256)
Q Consensus       112 lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~~~~l  187 (256)
                      ||+|+||+||++..+ +++.+++|.+....   ......+..|+++++.++|||++++.+.+...+..+++|||+++++|
T Consensus         1 lg~g~~g~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L   80 (277)
T cd05577           1 LGKGGFGEVCACQVKATGKMYACKKLDKKRLKKRKGEQMALNEKKILEKVSSRFIVSLAYAFETKDDLCLVMTLMNGGDL   80 (277)
T ss_pred             CCCCCceeEEEEEEcCCCcEEEEEEEehhhhhhhhhhHHHHHHHHHHHhCCCCCEeeeeeEEecCCeEEEEEecCCCCcH
Confidence            689999999999864 68899999875422   22345678899999999999999999999999999999999987554


Q ss_pred             ------------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceeeeeeeecc
Q 047066          188 ------------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTL  242 (256)
Q Consensus       188 ------------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~~~~Gt~  242 (256)
                                  ++.....++.+++             +||+|+||++++++.+||+|||++........  .....|+.
T Consensus        81 ~~~l~~~~~~~~~~~~~~~~~~ql~~~l~~lH~~~i~H~di~p~Nil~~~~~~~~l~dfg~~~~~~~~~~--~~~~~~~~  158 (277)
T cd05577          81 KYHIYNVGEPGFPEARAIFYAAQIICGLEHLHQRRIVYRDLKPENVLLDDHGNVRISDLGLAVELKGGKK--IKGRAGTP  158 (277)
T ss_pred             HHHHHHcCcCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEEECCCCCEEEccCcchhhhccCCc--cccccCCC
Confidence                        3444444444444             69999999999999999999999987643211  12233666


Q ss_pred             cc----cccccCCCCCCC
Q 047066          243 GY----YLHTSQGTLNKE  256 (256)
Q Consensus       243 ~y----~~~~~~~t~ksD  256 (256)
                      .|    ...++.++.++|
T Consensus       159 ~y~~PE~~~~~~~~~~~D  176 (277)
T cd05577         159 GYMAPEVLQGEVYDFSVD  176 (277)
T ss_pred             CcCCHHHhcCCCCCchhh
Confidence            66    444555676666

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of

>cd07865 STKc_CDK9 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9

Probab=99.75  E-value=1.9e-17  Score=139.91  Aligned_cols=153  Identities=23%  Similarity=0.304  Sum_probs=113.2

Q ss_pred             CCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC--hhHHHHHHHHHHHHHhCCCCcccceeeEEEECC-------
Q 047066          104 NNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY--QSQIEQCINKVVVLSQINHRNVVGLLGCCLETE-------  173 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~-------  173 (256)
                      ++|++.+.||+|+||.||++... +++.+|+|.+....  ......+.+|+.++++++||||+++++++...+       
T Consensus        12 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~   91 (310)
T cd07865          12 SKYEKLAKIGQGTFGEVFKARHKKTKQIVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKATPYNRYK   91 (310)
T ss_pred             hheEEEEEeecCCCEEEEEEEECCCCcEEEEEEEeccCCcCCchhHHHHHHHHHHhCCCCCccceEEEEecccccccCCC
Confidence            57899999999999999999975 68899999875432  222345678999999999999999999987644       


Q ss_pred             -EEEEEEecCCC----------CCCCHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCC
Q 047066          174 -VPLLVNEFVKL----------PTISWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPI  229 (256)
Q Consensus       174 -~~~lv~e~~~~----------~~l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~  229 (256)
                       ..++++||+.+          ..+++.....++.|++             +||+|+||+++.++.+||+|||++..+..
T Consensus        92 ~~~~lv~e~~~~~l~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH~~~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~~  171 (310)
T cd07865          92 GSFYLVFEFCEHDLAGLLSNKNVKFTLSEIKKVMKMLLNGLYYIHRNKILHRDMKAANILITKDGILKLADFGLARAFSL  171 (310)
T ss_pred             ceEEEEEcCCCcCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHEEECCCCcEEECcCCCcccccC
Confidence             45999999965          2356666666666665             59999999999999999999999987643


Q ss_pred             CCce---eeeeeeecccc---c-ccc-cCCCCCCC
Q 047066          230 DETQ---LSTMVQGTLGY---Y-LHT-SQGTLNKE  256 (256)
Q Consensus       230 ~~~~---~~~~~~Gt~~y---~-~~~-~~~t~ksD  256 (256)
                      ....   ......+++.|   + +.+ ..++.++|
T Consensus       172 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~D  206 (310)
T cd07865         172 SKNSKPNRYTNRVVTLWYRPPELLLGERDYGPPID  206 (310)
T ss_pred             CcccCCCCccCcccCccccCcHHhcCCcccCchhh
Confidence            3221   11223466667   2 222 23566666

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multipl

>cd06636 STKc_MAP4K4_6 Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6

Probab=99.75  E-value=2e-17  Score=138.20  Aligned_cols=160  Identities=23%  Similarity=0.323  Sum_probs=116.8

Q ss_pred             ChHHHHhhcCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccChhHHHHHHHHHHHHHhC-CCCcccceeeEEEE-
Q 047066           95 TAGELKIATNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVYQSQIEQCINKVVVLSQI-NHRNVVGLLGCCLE-  171 (256)
Q Consensus        95 ~~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~-  171 (256)
                      +..+...+.+.|++.+.||+|+||.||+|... +++.+++|...... .....+..|+.++.++ +|+|++++++++.. 
T Consensus         7 ~~~~~~~~~~~~~~~~~lg~g~~~~v~~~~~~~~~~~~a~K~~~~~~-~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~   85 (282)
T cd06636           7 DLSALRDPAGIFELVEVVGNGTYGQVYKGRHVKTGQLAAIKVMDVTE-DEEEEIKLEINMLKKYSHHRNIATYYGAFIKK   85 (282)
T ss_pred             hhhhhcChhhhhhhheeeccCCCeEEEEEEEcCCCcEEEEEEEecCh-HHHHHHHHHHHHHHHhcCCCcEEEEeeehhcc
Confidence            33444456678999999999999999999974 67889999875433 3346688899999998 79999999999863 


Q ss_pred             -----CCEEEEEEecCCCCCCC------------HHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEec
Q 047066          172 -----TEVPLLVNEFVKLPTIS------------WEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDF  221 (256)
Q Consensus       172 -----~~~~~lv~e~~~~~~l~------------~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DF  221 (256)
                           .+..+++|||+.+++|.            +.....++.|++             +||+|+||++++++.++|+||
T Consensus        86 ~~~~~~~~~~iv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~~~ivH~dl~~~nili~~~~~~~l~df  165 (282)
T cd06636          86 SPPGHDDQLWLVMEFCGAGSVTDLVKNTKGNALKEDWIAYICREILRGLAHLHAHKVIHRDIKGQNVLLTENAEVKLVDF  165 (282)
T ss_pred             cccCCCCEEEEEEEeCCCCcHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCCEEEeeC
Confidence                 45789999999886653            333333444433             699999999999999999999


Q ss_pred             CCceecCCCCceeeeeeeecccc---c-cc-----ccCCCCCCC
Q 047066          222 GASKLVPIDETQLSTMVQGTLGY---Y-LH-----TSQGTLNKE  256 (256)
Q Consensus       222 Gla~~~~~~~~~~~~~~~Gt~~y---~-~~-----~~~~t~ksD  256 (256)
                      |++......... .....|++.|   + +.     ...++.++|
T Consensus       166 g~~~~~~~~~~~-~~~~~~~~~y~aPE~l~~~~~~~~~~~~~~D  208 (282)
T cd06636         166 GVSAQLDRTVGR-RNTFIGTPYWMAPEVIACDENPDATYDYRSD  208 (282)
T ss_pred             cchhhhhccccC-CCcccccccccCHhhcCcccCcCcCCCcccc
Confidence            998865432211 1234578888   2 21     345666776

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Ea

>cd07855 STKc_ERK5 Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5

Probab=99.75  E-value=1.2e-17  Score=143.04  Aligned_cols=153  Identities=20%  Similarity=0.280  Sum_probs=116.0

Q ss_pred             CCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC--hhHHHHHHHHHHHHHhCCCCcccceeeEEEE----CCEEE
Q 047066          104 NNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY--QSQIEQCINKVVVLSQINHRNVVGLLGCCLE----TEVPL  176 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~----~~~~~  176 (256)
                      ++|++.+.||+|++|.||+|..+ ++..|++|.+....  ......+.+|+.+++.++||||+++++++..    ....+
T Consensus         5 ~~y~~~~~lg~g~~g~v~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~   84 (334)
T cd07855           5 SRYKPIENIGSGAYGVVCSAIDTRSGKKVAIKKIPHAFDVPTLAKRTLRELKILRHFKHDNIIAIRDILRPPGADFKDVY   84 (334)
T ss_pred             hceeeeeeeecCCCeEEEEEEEcCCCCEEEEEEeccccccccchHHHHHHHHHHHhcCCCCccCHHHhccccCCCCceEE
Confidence            67889999999999999999865 68899999876432  2344667889999999999999999998763    35689


Q ss_pred             EEEecCCC---------CCCCHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCce-
Q 047066          177 LVNEFVKL---------PTISWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQ-  233 (256)
Q Consensus       177 lv~e~~~~---------~~l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~-  233 (256)
                      +++||+.+         +.+++.....++.+++             +||||+||++++++.+||+|||+++........ 
T Consensus        85 lv~e~~~~~l~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~~~~~  164 (334)
T cd07855          85 VVMDLMESDLHHIIHSDQPLTEEHIRYFLYQLLRGLKYIHSANVIHRDLKPSNLLVNEDCELRIGDFGMARGLSSSPTEH  164 (334)
T ss_pred             EEEehhhhhHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEEcCCCcEEecccccceeecccCcCC
Confidence            99999953         4456666666666555             699999999999999999999999876433221 


Q ss_pred             --eeeeeeecccc----cc-cccCCCCCCC
Q 047066          234 --LSTMVQGTLGY----YL-HTSQGTLNKE  256 (256)
Q Consensus       234 --~~~~~~Gt~~y----~~-~~~~~t~ksD  256 (256)
                        ......|+..|    .+ ....++.++|
T Consensus       165 ~~~~~~~~~~~~y~~PE~~~~~~~~~~~~D  194 (334)
T cd07855         165 KYFMTEYVATRWYRAPELLLSLPEYTTAID  194 (334)
T ss_pred             CcccccccccccccChHHhcCCcccccccc
Confidence              11233577777    22 2245677776

Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the

>KOG0984 consensus Mitogen-activated protein kinase (MAPK) kinase MKK3/MKK6 [Signal transduction mechanisms]

Probab=99.75  E-value=2.8e-18  Score=132.18  Aligned_cols=158  Identities=20%  Similarity=0.286  Sum_probs=118.7

Q ss_pred             HHHHhhcCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC-hhHHHHHHHHHHHHHhC-CCCcccceeeEEEECC
Q 047066           97 GELKIATNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY-QSQIEQCINKVVVLSQI-NHRNVVGLLGCCLETE  173 (256)
Q Consensus        97 ~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~  173 (256)
                      ..++++.+++.-...||+|++|.|-+-++. +|...|+|.+...- .+...+.+.|+++..+. ..|.+|.++|...+..
T Consensus        39 ~~~eV~ad~L~~i~elGrGayG~vekmrh~~sg~imAvKri~~tvn~q~q~r~L~dldi~~r~~~CPf~V~FyGa~~reg  118 (282)
T KOG0984|consen   39 RNFEVPADDLVGIEELGRGAYGVVEKMRHIQSGTIMAVKRIRATVNSQEQKRLLMDLDIIMRTVDCPFTVHFYGALFREG  118 (282)
T ss_pred             CccccchhhhhhhhhhcCCccchhhheeeccCCeEEEEeeehhhcChHHHHHHHHhhhhhccCCCCCeEEEeehhhhccc
Confidence            346777788888889999999998888754 78999999886433 34456788999887665 8999999999999889


Q ss_pred             EEEEEEecCCC-------------CCCCHHHHHHH--------------HHHHHhccCCCcEEEcCCCcEEEEecCCcee
Q 047066          174 VPLLVNEFVKL-------------PTISWEVRIRI--------------AAETAEDIKSINILLDDNYTTKVCDFGASKL  226 (256)
Q Consensus       174 ~~~lv~e~~~~-------------~~l~~~~~~~~--------------~~~i~rdlk~~NiLi~~~~~~ki~DFGla~~  226 (256)
                      ..|+-||.|..             +..++...=++              ..-||||+||+|||++.+|++|+||||.+-.
T Consensus       119 dvwIcME~M~tSldkfy~~v~~~g~~ipE~vlGkIa~Svv~al~~L~~kL~vIHRDvKPsNiLIn~~GqVKiCDFGIsG~  198 (282)
T KOG0984|consen  119 DVWICMELMDTSLDKFYRKVLKKGGTIPEDVLGKIAVSVVHALEFLHSKLSVIHRDVKPSNILINYDGQVKICDFGISGY  198 (282)
T ss_pred             cEEEeHHHhhhhHHHHHHHHHhcCCcCchHHhhHhHHHHHHHHHHHHHHhhhhhccCCcceEEEccCCcEEEccccccee
Confidence            99999998843             55544332222              2346799999999999999999999999988


Q ss_pred             cCCCCceeeeeeeecccc--------cccccCCCCCCC
Q 047066          227 VPIDETQLSTMVQGTLGY--------YLHTSQGTLNKE  256 (256)
Q Consensus       227 ~~~~~~~~~~~~~Gt~~y--------~~~~~~~t~ksD  256 (256)
                      +.+.-.  .+.-.|...|        ......|+.|||
T Consensus       199 L~dSiA--kt~daGCkpYmaPEri~~e~n~~gY~vksD  234 (282)
T KOG0984|consen  199 LVDSIA--KTMDAGCKPYMAPERINPELNQKGYSVKSD  234 (282)
T ss_pred             ehhhhH--HHHhcCCCccCChhhcCcccCcccceeehh
Confidence            754321  2223477777        444456677776

>cd05583 STKc_MSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase

Probab=99.75  E-value=2.1e-17  Score=138.56  Aligned_cols=140  Identities=27%  Similarity=0.289  Sum_probs=107.4

Q ss_pred             CCcccceeeeeCceEEEEEEEC----CCcEEEEEEecccC----hhHHHHHHHHHHHHHhC-CCCcccceeeEEEECCEE
Q 047066          105 NYAYDRMIGRGGYGTVFLGSLS----DNKAIAIKKSRIVY----QSQIEQCINKVVVLSQI-NHRNVVGLLGCCLETEVP  175 (256)
Q Consensus       105 ~~~~~~~lg~G~~g~V~~~~~~----~~~~vavK~~~~~~----~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~  175 (256)
                      +|++.+.||+|++|.||++...    ++..+|+|.++...    ......+.+|+.++..+ +|||++++.+.+...+..
T Consensus         1 ~~~~~~~ig~G~~~~vy~~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~~~~~~~~~~~~   80 (288)
T cd05583           1 NFELLRVLGTGAYGKVFLVRKVGGHDAGKLYAMKVLKKATIVQKAKTAEHTRTERQVLEAVRRCPFLVTLHYAFQTDTKL   80 (288)
T ss_pred             CceEEEEeccCCCceEEEEEEeccccCCcEEEEEEEehHHHHhhhhHHHHHHHHHHHHHhccCCcchhhhheeeecCCEE
Confidence            3677889999999999998742    56789999876422    22335678999999999 699999999999999999


Q ss_pred             EEEEecCCCCCC----------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCc
Q 047066          176 LLVNEFVKLPTI----------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDET  232 (256)
Q Consensus       176 ~lv~e~~~~~~l----------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~  232 (256)
                      ++||||+.+++|          ++.....++.|++             +||+|+||+++.++.++|+|||+++.+..+..
T Consensus        81 ~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~ql~~~l~~lH~~~~~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~  160 (288)
T cd05583          81 HLILDYVNGGELFTHLYQREHFTESEVRVYIAEIVLALDHLHQLGIIYRDIKLENILLDSEGHVVLTDFGLSKEFLAEEE  160 (288)
T ss_pred             EEEEecCCCCcHHHHHhhcCCcCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHeEECCCCCEEEEECccccccccccc
Confidence            999999988654          3333444444444             59999999999999999999999987654433


Q ss_pred             eeeeeeeecccc
Q 047066          233 QLSTMVQGTLGY  244 (256)
Q Consensus       233 ~~~~~~~Gt~~y  244 (256)
                      .......|++.|
T Consensus       161 ~~~~~~~~~~~y  172 (288)
T cd05583         161 ERAYSFCGTIEY  172 (288)
T ss_pred             cccccccCCccc
Confidence            222334577777

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines

>KOG0608 consensus Warts/lats-like serine threonine kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=99.75  E-value=1.3e-18  Score=152.92  Aligned_cols=126  Identities=21%  Similarity=0.242  Sum_probs=102.6

Q ss_pred             hcCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC---hhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEE
Q 047066          102 ATNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY---QSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLL  177 (256)
Q Consensus       102 ~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~l  177 (256)
                      ..+-|..++.||-|+||+|.+++.- +...+|+|.++..+   +.+..+...|-+||..-+++-||+|+-.|.+++.+|+
T Consensus       627 dKSmFvkik~iGvGAFGeV~Lv~KvDT~~lYAmKTLrKaDVl~rnQvaHVKAERDILAEADn~WVVrLyySFQDkdnLYF  706 (1034)
T KOG0608|consen  627 DKSMFVKIKTIGVGAFGEVCLVRKVDTRALYAMKTLRKADVLMRNQVAHVKAERDILAEADNEWVVRLYYSFQDKDNLYF  706 (1034)
T ss_pred             cccceEEEeeecccccceeEEEeecchhhHHHHhhhHHHHHHhhhhhhhhhhhhhhHhhcCCcceEEEEEEeccCCceEE
Confidence            4456788899999999999999843 46678999886544   4556778899999999999999999999999999999


Q ss_pred             EEecCCCCCCCHH----------HH-------------HHHHHHHHhccCCCcEEEcCCCcEEEEecCCceec
Q 047066          178 VNEFVKLPTISWE----------VR-------------IRIAAETAEDIKSINILLDDNYTTKVCDFGASKLV  227 (256)
Q Consensus       178 v~e~~~~~~l~~~----------~~-------------~~~~~~i~rdlk~~NiLi~~~~~~ki~DFGla~~~  227 (256)
                      ||||..||.+-..          +.             ++-+.-|||||||.|||||.+|++||+|||||..+
T Consensus       707 VMdYIPGGDmMSLLIrmgIFeE~LARFYIAEltcAiesVHkmGFIHRDiKPDNILIDrdGHIKLTDFGLCTGf  779 (1034)
T KOG0608|consen  707 VMDYIPGGDMMSLLIRMGIFEEDLARFYIAELTCAIESVHKMGFIHRDIKPDNILIDRDGHIKLTDFGLCTGF  779 (1034)
T ss_pred             EEeccCCccHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHhccceecccCccceEEccCCceeeeeccccccc
Confidence            9999999885211          11             12222355899999999999999999999999643

>KOG4717 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.75  E-value=2.8e-18  Score=147.76  Aligned_cols=147  Identities=19%  Similarity=0.220  Sum_probs=115.3

Q ss_pred             cCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccCh--hHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEE
Q 047066          103 TNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVYQ--SQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVN  179 (256)
Q Consensus       103 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~  179 (256)
                      ..-|.+.+.||+|.|..|-++++- +|..||||.+....-  -...+++.|+.-|+-++|||||++|++..++..+|+++
T Consensus        17 AGLYDLekTlG~GHFAVVKLArHVFTGekVAVKviDKTKlD~~st~hlfqEVRCMKLVQHpNiVRLYEViDTQTKlyLiL   96 (864)
T KOG4717|consen   17 AGLYDLEKTLGRGHFAVVKLARHVFTGEKVAVKVIDKTKLDTLSTGHLFQEVRCMKLVQHPNIVRLYEVIDTQTKLYLIL   96 (864)
T ss_pred             eeeehhhhhhcCCceehhhhhhhhcccceeEEEEecccccchhhhhHHHHHHHHHHHhcCcCeeeeeehhcccceEEEEE
Confidence            356888899999999999988843 799999999876543  33467899999999999999999999999999999999


Q ss_pred             ecCCCCCC-----------CHHHHH-------------HHHHHHHhccCCCcEEE-cCCCcEEEEecCCceecCCCCcee
Q 047066          180 EFVKLPTI-----------SWEVRI-------------RIAAETAEDIKSINILL-DDNYTTKVCDFGASKLVPIDETQL  234 (256)
Q Consensus       180 e~~~~~~l-----------~~~~~~-------------~~~~~i~rdlk~~NiLi-~~~~~~ki~DFGla~~~~~~~~~~  234 (256)
                      |.-++|.|           .+....             +...-+||||||+|+.+ ..-|-|||+|||++-.+.+..  .
T Consensus        97 ELGD~GDl~DyImKHe~Gl~E~La~kYF~QI~~AI~YCHqLHVVHRDLKPENVVFFEKlGlVKLTDFGFSNkf~PG~--k  174 (864)
T KOG4717|consen   97 ELGDGGDLFDYIMKHEEGLNEDLAKKYFAQIVHAISYCHQLHVVHRDLKPENVVFFEKLGLVKLTDFGFSNKFQPGK--K  174 (864)
T ss_pred             EecCCchHHHHHHhhhccccHHHHHHHHHHHHHHHHHHhhhhhhcccCCcceeEEeeecCceEeeeccccccCCCcc--h
Confidence            99988775           222222             22233448999999987 567899999999997765433  2


Q ss_pred             eeeeeecccc----cccccCC
Q 047066          235 STMVQGTLGY----YLHTSQG  251 (256)
Q Consensus       235 ~~~~~Gt~~y----~~~~~~~  251 (256)
                      .++.||+..|    .+.+..|
T Consensus       175 L~TsCGSLAYSAPEILLGDsY  195 (864)
T KOG4717|consen  175 LTTSCGSLAYSAPEILLGDSY  195 (864)
T ss_pred             hhcccchhhccCchhhhcCcc
Confidence            4567899999    4445555

>KOG0669 consensus Cyclin T-dependent kinase CDK9 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.75  E-value=2.8e-20  Score=147.23  Aligned_cols=153  Identities=23%  Similarity=0.280  Sum_probs=112.5

Q ss_pred             CCCcccceeeeeCceEEEEEEEC-CCcEEEEEEec--ccChhHHHHHHHHHHHHHhCCCCcccceeeEEEE--------C
Q 047066          104 NNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSR--IVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLE--------T  172 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~--~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~--------~  172 (256)
                      +.|.-...+|+|.||+||+++.+ +++.||+|+.-  ......-...++|+.+|..++|+|++.+++.|..        .
T Consensus        17 ~~yek~~kigqGtfgeVFkAr~~n~~kkvalkkvlmeneKeGfpitalreikiL~~lkHenv~nliEic~tk~Tp~~r~r   96 (376)
T KOG0669|consen   17 SKYEKLAKIGQGTFGEVFKARSKNTGKKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKATPTNRDR   96 (376)
T ss_pred             hHHHHHHhcCCchHHHHHHHhhcCccchhHHHHHHHhccccCCcHHHHHHHHHHHHhcchhHHHHHHHHhhccCCccccc
Confidence            34566678999999999999965 57788988642  2223334567899999999999999999988863        2


Q ss_pred             CEEEEEEecCCCC---CC--------------------CHHHHHHHHHHHHhccCCCcEEEcCCCcEEEEecCCceecCC
Q 047066          173 EVPLLVNEFVKLP---TI--------------------SWEVRIRIAAETAEDIKSINILLDDNYTTKVCDFGASKLVPI  229 (256)
Q Consensus       173 ~~~~lv~e~~~~~---~l--------------------~~~~~~~~~~~i~rdlk~~NiLi~~~~~~ki~DFGla~~~~~  229 (256)
                      ..+++|+++|++.   .|                    .-...++-...+|||+||.|+||+.++.+||+|||+|+.++.
T Consensus        97 ~t~ylVf~~cehDLaGlLsn~~vr~sls~Ikk~Mk~Lm~GL~~iHr~kilHRDmKaaNvLIt~dgilklADFGlar~fs~  176 (376)
T KOG0669|consen   97 ATFYLVFDFCEHDLAGLLSNRKVRFSLSEIKKVMKGLMNGLYYIHRNKILHRDMKAANVLITKDGILKLADFGLARAFST  176 (376)
T ss_pred             ceeeeeHHHhhhhHHHHhcCccccccHHHHHHHHHHHHHHHHHHHHhhHHhhcccHhhEEEcCCceEEeeccccccceec
Confidence            3489999999762   22                    112234555667899999999999999999999999987754


Q ss_pred             CCce---eeeeeeecccc-----cccccCCCCCCC
Q 047066          230 DETQ---LSTMVQGTLGY-----YLHTSQGTLNKE  256 (256)
Q Consensus       230 ~~~~---~~~~~~Gt~~y-----~~~~~~~t~ksD  256 (256)
                      .+..   ..+..+-|.+|     .+...+++++.|
T Consensus       177 ~~n~~kprytnrvvTLwYrppEllLG~r~yg~~iD  211 (376)
T KOG0669|consen  177 SKNVVKPRYTNRVVTLWYRPPELLLGDREYGPPID  211 (376)
T ss_pred             ccccCCCCcccceeeeecCCHHHhhcccccCCcch
Confidence            3222   22344568888     555667777655

>cd08227 PK_STRAD_alpha Pseudokinase domain of STE20-related kinase adapter protein alpha

Probab=99.75  E-value=2.6e-17  Score=140.62  Aligned_cols=120  Identities=16%  Similarity=0.177  Sum_probs=97.9

Q ss_pred             ccceeeee--CceEEEEEEEC-CCcEEEEEEecccC--hhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEecC
Q 047066          108 YDRMIGRG--GYGTVFLGSLS-DNKAIAIKKSRIVY--QSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEFV  182 (256)
Q Consensus       108 ~~~~lg~G--~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~  182 (256)
                      +.++||+|  +|++||++..+ +++.||+|.+....  ....+.+.+|+.+++.++||||+++++++..++..+++|||+
T Consensus         2 ~~~~ig~G~~~~~~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~~   81 (327)
T cd08227           2 LLTVIGRGFEDLMTVNLARYKPTGEYVTVRRINLEACTNEMVTFLQGELHVSKLFNHPNIVPYRATFIADNELWVVTSFM   81 (327)
T ss_pred             hhhhccccccceEEEEEEeecccCcEEEEEEechhhccHHHHHHHHHHHHHHHhcCCCCeeeEEEEEEECCEEEEEEecc
Confidence            45789999  67899999864 78999999886532  334466788999999999999999999999999999999999


Q ss_pred             CCCCC------------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceec
Q 047066          183 KLPTI------------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLV  227 (256)
Q Consensus       183 ~~~~l------------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~  227 (256)
                      +++++            ++.....++.|++             +||||+|||++.++.++++||+.+...
T Consensus        82 ~~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~~L~~LH~~~iiH~dlkp~Nil~~~~~~~~l~~~~~~~~~  151 (327)
T cd08227          82 AYGSAKDLICTHFMDGMSELAIAYILQGVLKALDYIHHMGYVHRSVKASHILISVDGKVYLSGLRSNLSM  151 (327)
T ss_pred             CCCcHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHCCEecCCCChhhEEEecCCcEEEcccchhhcc
Confidence            87654            4444455555554             699999999999999999999876543

Protein Kinase family, STE20-related kinase adapter protein (STRAD) alpha subfamily, pseudokinase domain. The STRAD alpha subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hype

>cd05572 STKc_cGK_PKG Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase

Probab=99.74  E-value=3e-17  Score=135.59  Aligned_cols=143  Identities=23%  Similarity=0.271  Sum_probs=110.8

Q ss_pred             eeeeCceEEEEEEEC-CCcEEEEEEecccC---hhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEecCCCCCC
Q 047066          112 IGRGGYGTVFLGSLS-DNKAIAIKKSRIVY---QSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEFVKLPTI  187 (256)
Q Consensus       112 lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~~~~l  187 (256)
                      ||.|++|.||++... ++..+++|.+....   ....+.+.+|+.+++.++||||+++++.+.+.+..++++||+++++|
T Consensus         1 lg~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L   80 (262)
T cd05572           1 LGVGGFGRVELVKVKSKNRTFALKCVKKRHIVETGQQEHIFSEKEILEECNHPFIVKLYRTFKDKKYIYMLMEYCLGGEL   80 (262)
T ss_pred             CCCCCceEEEEEEECCCCcEEEEEEEehhcchhhhHHHHHHHHHHHHHhCCCCCEeeeeeeEEcCCccEEEEecCCCCcH
Confidence            689999999999975 48899999876432   23446789999999999999999999999999999999999988665


Q ss_pred             ----------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceeeeeeeecccc
Q 047066          188 ----------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTLGY  244 (256)
Q Consensus       188 ----------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~~~~Gt~~y  244 (256)
                                +......++.+++             +||+|+||+++.++.++|+|||++.......  ......|++.|
T Consensus        81 ~~~l~~~~~l~~~~~~~~~~~i~~~l~~lH~~~~~h~dl~~~nilv~~~~~~~l~df~~~~~~~~~~--~~~~~~~~~~~  158 (262)
T cd05572          81 WTILRDRGLFDEYTARFYIACVVLAFEYLHNRGIIYRDLKPENLLLDSNGYVKLVDFGFAKKLKSGQ--KTWTFCGTPEY  158 (262)
T ss_pred             HHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhCCcccCCCCHHHEEEcCCCCEEEeeCCcccccCccc--ccccccCCcCc
Confidence                      3333334444433             6999999999999999999999998775432  12223577777


Q ss_pred             ----cccccCCCCCCC
Q 047066          245 ----YLHTSQGTLNKE  256 (256)
Q Consensus       245 ----~~~~~~~t~ksD  256 (256)
                          .+....++.++|
T Consensus       159 ~~PE~~~~~~~~~~~D  174 (262)
T cd05572         159 VAPEIILNKGYDFSVD  174 (262)
T ss_pred             cChhHhcCCCCCChhh
Confidence                444566777776

Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowi

>KOG0584 consensus Serine/threonine protein kinase [General function prediction only]

Probab=99.74  E-value=1.1e-18  Score=153.00  Aligned_cols=147  Identities=18%  Similarity=0.285  Sum_probs=114.6

Q ss_pred             cccceeeeeCceEEEEEEEC-CCcEEEEEEecc----cChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCE--EEEEE
Q 047066          107 AYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRI----VYQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEV--PLLVN  179 (256)
Q Consensus       107 ~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~----~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~--~~lv~  179 (256)
                      +...+||+|+|-+||+|.+. +|-+||.-.++.    ..+...++|..|+.+|+.|+||||++++.+|.+...  +.+|+
T Consensus        43 k~~evLGrGafKtVYka~De~~giEVAWnqvk~~d~~q~~~~leR~~~Ev~lLKsL~H~NIirfy~SW~d~~n~~in~iT  122 (632)
T KOG0584|consen   43 KFDEVLGRGAFKTVYKAFDEEEGIEVAWNQVKIRDVTQSPEELERLYSEVHLLKSLKHPNIIRFYDSWVDTDNKTINFIT  122 (632)
T ss_pred             ehhhhcccccceeeeeccccccchhhHHHHHhHHHhhcChHHHHHHHHHHHHHccCCCCceeeeeeheecCCCceeeeee
Confidence            45579999999999999964 577888764432    234556899999999999999999999999997554  88999


Q ss_pred             ecCCCCCCCHHHH----------HHHHHH---------------HHhccCCCcEEEcC-CCcEEEEecCCceecCCCCce
Q 047066          180 EFVKLPTISWEVR----------IRIAAE---------------TAEDIKSINILLDD-NYTTKVCDFGASKLVPIDETQ  233 (256)
Q Consensus       180 e~~~~~~l~~~~~----------~~~~~~---------------i~rdlk~~NiLi~~-~~~~ki~DFGla~~~~~~~~~  233 (256)
                      |.+..|+|....+          ...+.|               ||||||..||+|+. .|.|||+|+|||..+...   
T Consensus       123 EL~TSGtLr~Y~kk~~~vn~kaik~W~RQILkGL~yLHs~~PPIIHRDLKCDNIFinG~~G~VKIGDLGLAtl~r~s---  199 (632)
T KOG0584|consen  123 ELFTSGTLREYRKKHRRVNIKAIKSWCRQILKGLVYLHSQDPPIIHRDLKCDNIFVNGNLGEVKIGDLGLATLLRKS---  199 (632)
T ss_pred             ecccCCcHHHHHHHhccCCHHHHHHHHHHHHHHhhhhhcCCCCccccccccceEEEcCCcCceeecchhHHHHhhcc---
Confidence            9999999854443          233333               44799999999974 689999999999986432   


Q ss_pred             eeeeeeecccc---cccccCCCCCCC
Q 047066          234 LSTMVQGTLGY---YLHTSQGTLNKE  256 (256)
Q Consensus       234 ~~~~~~Gt~~y---~~~~~~~t~ksD  256 (256)
                      ....+.|||.|   .+....|++..|
T Consensus       200 ~aksvIGTPEFMAPEmYEE~YnE~VD  225 (632)
T KOG0584|consen  200 HAKSVIGTPEFMAPEMYEENYNELVD  225 (632)
T ss_pred             ccceeccCccccChHHHhhhcchhhh
Confidence            23447799999   666677777665

>KOG0587 consensus Traf2- and Nck-interacting kinase and related germinal center kinase (GCK) family protein kinases [Signal transduction mechanisms]

Probab=99.74  E-value=3.1e-17  Score=148.65  Aligned_cols=145  Identities=26%  Similarity=0.297  Sum_probs=111.6

Q ss_pred             HHHhhcCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccChhHHHHHHHHHHHHHhC-CCCcccceeeEEEE----
Q 047066           98 ELKIATNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVYQSQIEQCINKVVVLSQI-NHRNVVGLLGCCLE----  171 (256)
Q Consensus        98 ~~~~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~----  171 (256)
                      ...-+.+-+++.+++|.|.+|+||+++.. +++..|+|+...... ..++...|.++|+.. +|||++.++|++..    
T Consensus        13 ~lpdp~d~~ei~evig~Gtygkv~k~k~~~~~~~aa~kI~~~~~d-~deEiE~eynil~~~~~hpnv~~fyg~~~k~~~~   91 (953)
T KOG0587|consen   13 SLPDPADIFEIIEVIGNGTYGKVYKGRHVKTGQLAAIKIMDPTED-EEEEIELEYNMLKKYSHHPNVATFYGAFIKKDPG   91 (953)
T ss_pred             hCCCCCCccEEEEEEeeccceeEEEEeeeecCceeeeEeecCCcc-ccHHHHHHHHHHHhccCCCCcceEEEEEEEecCC
Confidence            34445677888999999999999999954 688888887765443 336677899999988 79999999999873    


Q ss_pred             -CCEEEEEEecCCCCCCC------------HHHHHHHHH-------------HHHhccCCCcEEEcCCCcEEEEecCCce
Q 047066          172 -TEVPLLVNEFVKLPTIS------------WEVRIRIAA-------------ETAEDIKSINILLDDNYTTKVCDFGASK  225 (256)
Q Consensus       172 -~~~~~lv~e~~~~~~l~------------~~~~~~~~~-------------~i~rdlk~~NiLi~~~~~~ki~DFGla~  225 (256)
                       ++.+|+|||||.+|+.+            |....-|+.             -||||+|-.|||++.++.|||.|||++.
T Consensus        92 ~~DqLWLVMEfC~gGSVTDLVKn~~g~rl~E~~IaYI~re~lrgl~HLH~nkviHRDikG~NiLLT~e~~VKLvDFGvSa  171 (953)
T KOG0587|consen   92 NGDQLWLVMEFCGGGSVTDLVKNTKGNRLKEEWIAYILREILRGLAHLHNNKVIHRDIKGQNVLLTENAEVKLVDFGVSA  171 (953)
T ss_pred             CCCeEEEEeeccCCccHHHHHhhhcccchhhHHHHHHHHHHHHHHHHHhhcceeeecccCceEEEeccCcEEEeeeeeee
Confidence             57899999999998853            222222222             2447999999999999999999999999


Q ss_pred             ecCCCCceeeeeeeecccc
Q 047066          226 LVPIDETQLSTMVQGTLGY  244 (256)
Q Consensus       226 ~~~~~~~~~~~~~~Gt~~y  244 (256)
                      .+........ +..|||.|
T Consensus       172 QldsT~grRn-T~iGtP~W  189 (953)
T KOG0587|consen  172 QLDSTVGRRN-TFIGTPYW  189 (953)
T ss_pred             eeeccccccc-CcCCCccc
Confidence            8864433333 34599988

>PHA02882 putative serine/threonine kinase; Provisional

Probab=99.74  E-value=3e-17  Score=138.28  Aligned_cols=156  Identities=21%  Similarity=0.281  Sum_probs=103.4

Q ss_pred             hhcCCCcccceeeeeCceEEEEEEECC----CcEEEEEEecccChhHH-----------HHHHHHHHHHHhCCCCcccce
Q 047066          101 IATNNYAYDRMIGRGGYGTVFLGSLSD----NKAIAIKKSRIVYQSQI-----------EQCINKVVVLSQINHRNVVGL  165 (256)
Q Consensus       101 ~~~~~~~~~~~lg~G~~g~V~~~~~~~----~~~vavK~~~~~~~~~~-----------~~~~~E~~~l~~l~h~niv~l  165 (256)
                      +..++|++.+.||+|+||.||+|...+    +..+++|..........           .....+...+..++|+|++++
T Consensus         9 i~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~~k~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~h~~i~~~   88 (294)
T PHA02882          9 ITGKEWKIDKLIGCGGFGCVYETQCASDHCINNQAVAKIENLENETIVMETLVYNNIYDIDKIALWKNIHNIDHLGIPKY   88 (294)
T ss_pred             cCCCceEEeeEEecCCCceEEEEEEcCCcccccceEEEeccccCCchhhHHHHHHhhhhHHHHHHHHHhccCCCCCCCcE
Confidence            344689999999999999999999654    34556664332221110           112233344566789999999


Q ss_pred             eeEEEECC----EEEEEEecCCCC---------CCCHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEE
Q 047066          166 LGCCLETE----VPLLVNEFVKLP---------TISWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVC  219 (256)
Q Consensus       166 ~~~~~~~~----~~~lv~e~~~~~---------~l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~  219 (256)
                      ++++....    ..++++|++...         ..++.....++.|++             |||||+|||++.++.+||+
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~iiHrDiKp~Nill~~~~~~~l~  168 (294)
T PHA02882         89 YGCGSFKRCRMYYRFILLEKLVENTKEIFKRIKCKNKKLIKNIMKDMLTTLEYIHEHGISHGDIKPENIMVDGNNRGYII  168 (294)
T ss_pred             EEeeeEecCCceEEEEEEehhccCHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCcEEEE
Confidence            99776543    346777766331         233444445555544             7999999999999999999


Q ss_pred             ecCCceecCCCCce------eeeeeeecccc----cccccCCCCCCC
Q 047066          220 DFGASKLVPIDETQ------LSTMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       220 DFGla~~~~~~~~~------~~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      |||+|+.+..+...      ......||+.|    ...+..++.++|
T Consensus       169 DFGla~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~D  215 (294)
T PHA02882        169 DYGIASHFIIHGKHIEYSKEQKDLHRGTLYYAGLDAHNGACVTRRGD  215 (294)
T ss_pred             EcCCceeeccCCcccccccccccccCCCccccCHHHhCCCCCCcHHH
Confidence            99999876432211      11234599999    555677788877

>cd08217 STKc_Nek2 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

Probab=99.74  E-value=4.3e-17  Score=134.32  Aligned_cols=151  Identities=25%  Similarity=0.343  Sum_probs=113.8

Q ss_pred             CCcccceeeeeCceEEEEEEEC-CCcEEEEEEeccc--ChhHHHHHHHHHHHHHhCCCCcccceeeEEEE--CCEEEEEE
Q 047066          105 NYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIV--YQSQIEQCINKVVVLSQINHRNVVGLLGCCLE--TEVPLLVN  179 (256)
Q Consensus       105 ~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~--~~~~~lv~  179 (256)
                      +|++.+.||.|+||.||++... ++..+++|.+...  .....+.+..|+.+++.++|||++++++++..  ....++++
T Consensus         1 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~   80 (265)
T cd08217           1 DYEVLETIGKGSFGTVRKVRRKSDGKILVWKEIDYGNMTEKEKQQLVSEVNILRELKHPNIVRYYDRIIDRSNQTLYIVM   80 (265)
T ss_pred             CceeeeeeccCCCeEEEEeeecCCCCEEEEEEEecccCCHHHHHHHHHHHHHHHhcCCCccceeeeeeecCCCCEEEEEe
Confidence            4778889999999999999864 6789999987543  34455678899999999999999999998764  45689999


Q ss_pred             ecCCCCCC--------------CHHHHHHHHH------------------HHHhccCCCcEEEcCCCcEEEEecCCceec
Q 047066          180 EFVKLPTI--------------SWEVRIRIAA------------------ETAEDIKSINILLDDNYTTKVCDFGASKLV  227 (256)
Q Consensus       180 e~~~~~~l--------------~~~~~~~~~~------------------~i~rdlk~~NiLi~~~~~~ki~DFGla~~~  227 (256)
                      ||+++++|              ++.....++.                  .+++||+|+||++++++.+||+|||++...
T Consensus        81 e~~~~~~L~~~l~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~~~~~~~~i~h~dl~p~nili~~~~~~kl~d~g~~~~~  160 (265)
T cd08217          81 EYCEGGDLAQLIQKCKKERKYIEEEFIWRILTQLLLALYECHNRSDPGNTVLHRDLKPANIFLDANNNVKLGDFGLAKIL  160 (265)
T ss_pred             hhccCCCHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHhcCccccCcceecCCCHHHEEEecCCCEEEecccccccc
Confidence            99988665              3333333333                  234699999999999999999999999987


Q ss_pred             CCCCceeeeeeeecccc----cccccCCCCCCC
Q 047066          228 PIDETQLSTMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       228 ~~~~~~~~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      ...... .....|++.|    ......++.++|
T Consensus       161 ~~~~~~-~~~~~~~~~~~~pE~~~~~~~~~~~D  192 (265)
T cd08217         161 GHDSSF-AKTYVGTPYYMSPEQLNHMSYDEKSD  192 (265)
T ss_pred             cCCccc-ccccccCCCccChhhhcCCCCCchhH
Confidence            544321 2223577777    445556676666

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exi

>cd05074 PTKc_Tyro3 Catalytic domain of the Protein Tyrosine Kinase, Tyro3

Probab=99.74  E-value=2.4e-17  Score=136.90  Aligned_cols=151  Identities=24%  Similarity=0.426  Sum_probs=108.3

Q ss_pred             CcccceeeeeCceEEEEEEEC----CCcEEEEEEeccc--ChhHHHHHHHHHHHHHhCCCCcccceeeEEEECC------
Q 047066          106 YAYDRMIGRGGYGTVFLGSLS----DNKAIAIKKSRIV--YQSQIEQCINKVVVLSQINHRNVVGLLGCCLETE------  173 (256)
Q Consensus       106 ~~~~~~lg~G~~g~V~~~~~~----~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~------  173 (256)
                      |++.+.||+|+||.||+|...    ++..+|+|.+...  .....+++.+|+.+++.++|||++++++++...+      
T Consensus         1 ~~~~~~ig~g~~g~v~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~   80 (273)
T cd05074           1 FTLGRMLGKGEFGSVREAQLKSEDGSFQKVAVKMLKADIFSSSDIEEFLREAACMKEFDHPNVIKLIGVSLRSRAKGRLP   80 (273)
T ss_pred             CcchhcccCCCCCCEEeeEeeccCCCceEEEEEEeccccCChHHHHHHHHHHHHHhcCCCCCcceEEEEEccCCCCCccc
Confidence            556789999999999999853    3678999987543  3345577899999999999999999999886532      


Q ss_pred             EEEEEEecCCCCCC----------------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCc
Q 047066          174 VPLLVNEFVKLPTI----------------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGAS  224 (256)
Q Consensus       174 ~~~lv~e~~~~~~l----------------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla  224 (256)
                      ..++++||+.++++                +......++.+++             +||||+||+++.++.+||+|||++
T Consensus        81 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~~~i~H~dikp~nili~~~~~~kl~dfg~~  160 (273)
T cd05074          81 IPMVILPFMKHGDLHTFLLMSRIGEEPFTLPLQTLVRFMIDIASGMEYLSSKNFIHRDLAARNCMLNENMTVCVADFGLS  160 (273)
T ss_pred             ceEEEEecCCCCcHHHHHHHhcccCCCCCCCHHHHHHHHHHHHHHHHHHHhCCEeecccchhhEEEcCCCCEEECccccc
Confidence            34788899887665                2333445555554             699999999999999999999999


Q ss_pred             eecCCCCceee-eeeeecccc----cccccCCCCCCC
Q 047066          225 KLVPIDETQLS-TMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       225 ~~~~~~~~~~~-~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      +.......... ....+++.|    ....+.++.++|
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~sD  197 (273)
T cd05074         161 KKIYSGDYYRQGCASKLPVKWLALESLADNVYTTHSD  197 (273)
T ss_pred             ccccCCcceecCCCccCchhhcCHhHHhcCccchhhh
Confidence            87643322111 112234444    344455566665

Protein Tyrosine Kinase (PTK) family; Tyro3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyro3 (or Sky) is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Tyro3 is predominantly expressed in the central nervous system and the brain, and functions as a neurotrophic fac

>cd07834 STKc_MAPK Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase

Probab=99.74  E-value=1.6e-17  Score=141.99  Aligned_cols=152  Identities=26%  Similarity=0.368  Sum_probs=116.6

Q ss_pred             CCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC--hhHHHHHHHHHHHHHhCCCCcccceeeEEEECC-----EEE
Q 047066          105 NYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY--QSQIEQCINKVVVLSQINHRNVVGLLGCCLETE-----VPL  176 (256)
Q Consensus       105 ~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~-----~~~  176 (256)
                      +|++.+.||.|++|.||+|... ++..+++|.+....  ....+.+.+|+.+++.++||||+++.+++...+     ..+
T Consensus         1 ~y~i~~~ig~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~   80 (330)
T cd07834           1 RYELLKPIGSGAYGVVCSAVDKRTGRKVAIKKISNVFDDLIDAKRILREIKLLRHLRHENIIGLLDILRPPSPEDFNDVY   80 (330)
T ss_pred             CceeeeeecCCCCeEEEEEEeCCCCcEEEEEeeccccccchhhhhHHHHHHHHHhcCCcchhhhhhhhcccCcccccceE
Confidence            4778899999999999999975 58899999886543  344567899999999999999999999988765     789


Q ss_pred             EEEecCCC---------CCCCHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCc--
Q 047066          177 LVNEFVKL---------PTISWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDET--  232 (256)
Q Consensus       177 lv~e~~~~---------~~l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~--  232 (256)
                      ++|||+.+         +.+++.....++.+++             +||||+||+++.++.++|+|||++........  
T Consensus        81 lv~e~~~~~l~~~l~~~~~l~~~~~~~i~~~l~~~l~~LH~~gi~H~dlkp~nili~~~~~~~L~dfg~~~~~~~~~~~~  160 (330)
T cd07834          81 IVTELMETDLHKVIKSPQPLTDDHIQYFLYQILRGLKYLHSANVIHRDLKPSNILVNSNCDLKICDFGLARGVDPDEDEK  160 (330)
T ss_pred             EEecchhhhHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCCEEEcccCceEeeccccccc
Confidence            99999875         2455555555665554             59999999999999999999999988754431  


Q ss_pred             eeeeeeeecccc----ccccc-CCCCCCC
Q 047066          233 QLSTMVQGTLGY----YLHTS-QGTLNKE  256 (256)
Q Consensus       233 ~~~~~~~Gt~~y----~~~~~-~~t~ksD  256 (256)
                      .......||+.|    .+.+. .++.++|
T Consensus       161 ~~~~~~~~~~~y~aPE~~~~~~~~~~~sD  189 (330)
T cd07834         161 GFLTEYVVTRWYRAPELLLSSSRYTKAID  189 (330)
T ss_pred             ccccccccccCcCCceeeecccCCCcchh
Confidence            112233467777    33333 5666665

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and

>cd06608 STKc_myosinIII_like Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases

Probab=99.74  E-value=5e-17  Score=134.74  Aligned_cols=141  Identities=28%  Similarity=0.351  Sum_probs=109.2

Q ss_pred             hcCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccChhHHHHHHHHHHHHHhC-CCCcccceeeEEEECC------
Q 047066          102 ATNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVYQSQIEQCINKVVVLSQI-NHRNVVGLLGCCLETE------  173 (256)
Q Consensus       102 ~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~------  173 (256)
                      +.++|++.+.||+|++|.||+|..+ +++.+++|....... ..+.+.+|+.+++++ +|+||+++++++....      
T Consensus         4 ~~~~y~~~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~-~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~~~~   82 (275)
T cd06608           4 PTGIFELVEVIGEGTYGKVYKARHKKTGQLVAIKIMDIIED-EEEEIKEEYNILRKYSNHPNIATFYGAFIKKNPPGNDD   82 (275)
T ss_pred             chhheeheeeecCCCCeEEEEEEECCCCcEEEEEEEecCch-hHHHHHHHHHHHHHhcCCCChheEEEEEEecCCCCcce
Confidence            4578999999999999999999975 578899998765443 346789999999999 7999999999997644      


Q ss_pred             EEEEEEecCCCCCC--------------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCcee
Q 047066          174 VPLLVNEFVKLPTI--------------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKL  226 (256)
Q Consensus       174 ~~~lv~e~~~~~~l--------------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~  226 (256)
                      ..+++|||+++++|              ++.....++.|++             +||+|+||++++++.+||+|||++..
T Consensus        83 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~ql~~al~~lH~~~i~H~~l~p~ni~~~~~~~~~l~d~~~~~~  162 (275)
T cd06608          83 QLWLVMELCGGGSVTDLVKGLRKKGKRLKEEWIAYILRETLRGLAYLHENKVIHRDIKGQNILLTKNAEVKLVDFGVSAQ  162 (275)
T ss_pred             EEEEEEEcCCCCcHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHhcCCcccCCCCHHHEEEccCCeEEECCCcccee
Confidence            48999999987654              3333334444444             59999999999999999999999987


Q ss_pred             cCCCCceeeeeeeecccc
Q 047066          227 VPIDETQLSTMVQGTLGY  244 (256)
Q Consensus       227 ~~~~~~~~~~~~~Gt~~y  244 (256)
                      ....... .....|++.|
T Consensus       163 ~~~~~~~-~~~~~~~~~y  179 (275)
T cd06608         163 LDSTLGR-RNTFIGTPYW  179 (275)
T ss_pred             cccchhh-hcCccccccc
Confidence            5432221 2223477777

Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin I

>cd07831 STKc_MOK Catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase

Probab=99.74  E-value=4.6e-17  Score=135.71  Aligned_cols=148  Identities=21%  Similarity=0.237  Sum_probs=111.3

Q ss_pred             CcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC-hhHHHHHHHHHHHHHhC-CCCcccceeeEEEEC--CEEEEEEe
Q 047066          106 YAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY-QSQIEQCINKVVVLSQI-NHRNVVGLLGCCLET--EVPLLVNE  180 (256)
Q Consensus       106 ~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~--~~~~lv~e  180 (256)
                      |++.+.||+|+||.||++... ++..+|+|..+... ........+|+..+.++ +|+|++++++++.+.  +..++++|
T Consensus         1 y~~~~~lg~g~~~~v~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~~~~~lv~e   80 (282)
T cd07831           1 YKILGKIGEGTFSEVLKAQSRKTGKYYAIKCMKKHFKSLEQVNNLREIQALRRLSPHPNILRLIEVLFDRKTGRLALVFE   80 (282)
T ss_pred             CceEeeccccccceEEEEEEcCCCcEEEEEEehhccCCchhhhHHHHHHHHhhcCCCCCccceEEEEecCCCCcEEEEEe
Confidence            567789999999999999865 68899999876532 22223456789999988 599999999999987  88999999


Q ss_pred             cCCC----------CCCCHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceeeee
Q 047066          181 FVKL----------PTISWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTM  237 (256)
Q Consensus       181 ~~~~----------~~l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~~  237 (256)
                      |+++          +.+++.....++.+++             +||+|+||+++. +.+||+|||+++.+......  ..
T Consensus        81 ~~~~~l~~~l~~~~~~~~~~~~~~~~~qi~~~L~~LH~~~i~H~dl~p~ni~l~~-~~~kl~dfg~~~~~~~~~~~--~~  157 (282)
T cd07831          81 LMDMNLYELIKGRKRPLPEKRVKSYMYQLLKSLDHMHRNGIFHRDIKPENILIKD-DILKLADFGSCRGIYSKPPY--TE  157 (282)
T ss_pred             cCCccHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCceecccCHHHEEEcC-CCeEEEecccccccccCCCc--CC
Confidence            9965          2356666666666655             699999999999 99999999999876433221  22


Q ss_pred             eeecccc----cc-cccCCCCCCC
Q 047066          238 VQGTLGY----YL-HTSQGTLNKE  256 (256)
Q Consensus       238 ~~Gt~~y----~~-~~~~~t~ksD  256 (256)
                      ..+++.|    ++ ..+.++.++|
T Consensus       158 ~~~~~~y~aPE~~~~~~~~~~~~D  181 (282)
T cd07831         158 YISTRWYRAPECLLTDGYYGPKMD  181 (282)
T ss_pred             CCCCcccCChhHhhcCCCCCcchh
Confidence            3467777    22 3445677776

Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and differentiation.

>cd07835 STKc_CDK1_like Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases

Probab=99.74  E-value=2.9e-17  Score=137.14  Aligned_cols=138  Identities=28%  Similarity=0.390  Sum_probs=107.4

Q ss_pred             CcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC--hhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEecC
Q 047066          106 YAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY--QSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEFV  182 (256)
Q Consensus       106 ~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~  182 (256)
                      |++.+.||+|++|.||+|..+ ++..+++|.+....  ....+.+.+|++.++.++|||++++++++...+..++++||+
T Consensus         1 y~~~~~l~~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~l~~~~iv~~~~~~~~~~~~~iv~e~~   80 (283)
T cd07835           1 YQKVEKIGEGTYGVVYKARDKLTGEIVALKKIRLETEDEGVPSTAIREISLLKELNHPNIVRLLDVVHSENKLYLVFEFL   80 (283)
T ss_pred             CchheEecCCCCeEEEEEEEcCCCCEEEEEEeecccccccchhHHHHHHHHHHhcCCCCccCHhheeccCCeEEEEEecc
Confidence            567789999999999999865 78999999876433  223356888999999999999999999999999999999998


Q ss_pred             CC---------C--CCCHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceeeeee
Q 047066          183 KL---------P--TISWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMV  238 (256)
Q Consensus       183 ~~---------~--~l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~~~  238 (256)
                      +.         .  .+++.....++.+++             +||+|+||+++.++.++|+|||+++.+....... ...
T Consensus        81 ~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~lH~~~~~H~dl~p~nil~~~~~~~~l~df~~~~~~~~~~~~~-~~~  159 (283)
T cd07835          81 DLDLKKYMDSSPLTGLDPPLIKSYLYQLLQGIAYCHSHRVLHRDLKPQNLLIDREGALKLADFGLARAFGVPVRTY-THE  159 (283)
T ss_pred             CcCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCeeCCCCCHHHEEEcCCCcEEEeecccccccCCCcccc-Ccc
Confidence            54         1  355666666666655             5999999999999999999999998654332211 122


Q ss_pred             eecccc
Q 047066          239 QGTLGY  244 (256)
Q Consensus       239 ~Gt~~y  244 (256)
                      .+++.|
T Consensus       160 ~~~~~~  165 (283)
T cd07835         160 VVTLWY  165 (283)
T ss_pred             ccccCC
Confidence            356666

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyc

>cd05579 STKc_MAST_like Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins

Probab=99.74  E-value=3.5e-17  Score=134.86  Aligned_cols=145  Identities=28%  Similarity=0.324  Sum_probs=110.4

Q ss_pred             eeeeCceEEEEEEEC-CCcEEEEEEecccCh---hHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEecCCCCCC
Q 047066          112 IGRGGYGTVFLGSLS-DNKAIAIKKSRIVYQ---SQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEFVKLPTI  187 (256)
Q Consensus       112 lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~---~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~~~~l  187 (256)
                      ||.|+||.||++... +++.+++|.+.....   ...+.+.+|+++++.++|||++++++.+...+..++++||+.+++|
T Consensus         1 lg~g~~~~vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L   80 (265)
T cd05579           1 ISKGAYGRVFLAKKKSTGDIYAIKVIKKADMIRKNQVDQVLTERDILSQAQSPYVVKLYYSFQGKKNLYLVMEYLPGGDL   80 (265)
T ss_pred             CCCCCceEEEEEEECCCCCEEEEEEecchhhhhhhHHHHHHHHHHHHHhCCCcchhHHHHheecCcEEEEEEecCCCCcH
Confidence            588999999999976 488999998765432   4456789999999999999999999999999999999999987654


Q ss_pred             ----------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCc-------eeeee
Q 047066          188 ----------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDET-------QLSTM  237 (256)
Q Consensus       188 ----------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~-------~~~~~  237 (256)
                                ++.....++.|++             +||+|+||++++++.+||+|||++.....+..       .....
T Consensus        81 ~~~l~~~~~~~~~~~~~i~~qi~~~L~~lH~~~i~H~di~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~  160 (265)
T cd05579          81 ASLLENVGSLDEDVARIYIAEIVLALEYLHSNGIIHRDLKPDNILIDSNGHLKLTDFGLSKVGLVRRQINLNDDEKEDKR  160 (265)
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHcCeecCCCCHHHeEEcCCCCEEEEecccchhcccCcccccccccccccC
Confidence                      4445555555555             59999999999999999999999876543311       11223


Q ss_pred             eeecccc----cccccCCCCCCC
Q 047066          238 VQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       238 ~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      ..+++.|    .......+.++|
T Consensus       161 ~~~~~~~~~Pe~~~~~~~~~~~D  183 (265)
T cd05579         161 IVGTPDYIAPEVILGQGHSKTVD  183 (265)
T ss_pred             cccCccccCHHHhcCCCCCcchh
Confidence            3466666    334444566665

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert re

>cd07880 STKc_p38gamma_MAPK12 Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase

Probab=99.74  E-value=4.6e-17  Score=140.12  Aligned_cols=139  Identities=23%  Similarity=0.287  Sum_probs=107.9

Q ss_pred             hcCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC--hhHHHHHHHHHHHHHhCCCCcccceeeEEEECC-----
Q 047066          102 ATNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY--QSQIEQCINKVVVLSQINHRNVVGLLGCCLETE-----  173 (256)
Q Consensus       102 ~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~-----  173 (256)
                      ..++|++.+.||+|+||.||++... ++..||+|.+....  ......+.+|+.+++.++||||+++.+++...+     
T Consensus        13 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~   92 (343)
T cd07880          13 VPDRYRDLKQVGSGAYGTVCSALDRRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMKHENVIGLLDVFTPDLSLDRF   92 (343)
T ss_pred             cccceEEEEEeeecCCeEEEEEEECCCCcEEEEEEecccccchHHHHHHHHHHHHHHhcCCCCccceeeeecCCcccccc
Confidence            3567999999999999999999854 68899999875432  223456889999999999999999999887543     


Q ss_pred             -EEEEEEecCCC--------CCCCHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCC
Q 047066          174 -VPLLVNEFVKL--------PTISWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDE  231 (256)
Q Consensus       174 -~~~lv~e~~~~--------~~l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~  231 (256)
                       ..++++||+..        +.+++.....++.|++             +||+|+||+++.++.+||+|||++.....+.
T Consensus        93 ~~~~lv~e~~~~~l~~~~~~~~l~~~~~~~i~~qi~~al~~LH~~gi~H~dlkp~Nill~~~~~~kl~dfg~~~~~~~~~  172 (343)
T cd07880          93 HDFYLVMPFMGTDLGKLMKHEKLSEDRIQFLVYQMLKGLKYIHAAGIIHRDLKPGNLAVNEDCELKILDFGLARQTDSEM  172 (343)
T ss_pred             ceEEEEEecCCCCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCCEEEeecccccccccCc
Confidence             45899999843        3456666666666655             6999999999999999999999998764322


Q ss_pred             ceeeeeeeecccc
Q 047066          232 TQLSTMVQGTLGY  244 (256)
Q Consensus       232 ~~~~~~~~Gt~~y  244 (256)
                          ....+++.|
T Consensus       173 ----~~~~~~~~y  181 (343)
T cd07880         173 ----TGYVVTRWY  181 (343)
T ss_pred             ----cccccCCcc
Confidence                122366666

Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12

>cd05581 STKc_PDK1 Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

Probab=99.73  E-value=2.2e-17  Score=137.35  Aligned_cols=126  Identities=27%  Similarity=0.391  Sum_probs=105.4

Q ss_pred             CCCcccceeeeeCceEEEEEEEC-CCcEEEEEEeccc---ChhHHHHHHHHHHHHHhCC-CCcccceeeEEEECCEEEEE
Q 047066          104 NNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIV---YQSQIEQCINKVVVLSQIN-HRNVVGLLGCCLETEVPLLV  178 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~-h~niv~l~~~~~~~~~~~lv  178 (256)
                      ++|.+.+.||+|++|.||++... ++..+++|.....   .....+.+.+|..++.+++ ||||+++++.+...+..+++
T Consensus         1 ~~y~~~~~lg~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~lv   80 (280)
T cd05581           1 DDFKFGKIIGEGSFSTVVLAKEKETNKEYAIKILDKRQLIKEKKVKYVKIEKEVLTRLNGHPGIIKLYYTFQDEENLYFV   80 (280)
T ss_pred             CCceEeeeecCCCceEEEEEEEcCCCCEEEEEEechHhccchHHHHHHHHHHHHHHhcccCCCchhHHHHhcCCceEEEE
Confidence            36888899999999999999975 6889999987542   2333467889999999998 99999999999999999999


Q ss_pred             EecCCCCCC----------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCC
Q 047066          179 NEFVKLPTI----------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPI  229 (256)
Q Consensus       179 ~e~~~~~~l----------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~  229 (256)
                      ||++++++|          ++.....++.+++             +||+|+||+++.++.++++|||++.....
T Consensus        81 ~e~~~~~~L~~~l~~~~~l~~~~~~~i~~ql~~~l~~Lh~~~~~H~dl~~~ni~i~~~~~~~l~df~~~~~~~~  154 (280)
T cd05581          81 LEYAPNGELLQYIRKYGSLDEKCTRFYAAEILLALEYLHSKGIIHRDLKPENILLDKDMHIKITDFGTAKVLDP  154 (280)
T ss_pred             EcCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeeecCCCHHHeEECCCCCEEecCCccccccCC
Confidence            999987654          5555566666655             49999999999999999999999987644

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to auto

>cd05633 STKc_GRK3 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 3

Probab=99.73  E-value=6.4e-17  Score=135.20  Aligned_cols=143  Identities=22%  Similarity=0.256  Sum_probs=103.5

Q ss_pred             eeeeeCceEEEEEEEC-CCcEEEEEEecccC---hhHHHHHHHHHHHHH---hCCCCcccceeeEEEECCEEEEEEecCC
Q 047066          111 MIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY---QSQIEQCINKVVVLS---QINHRNVVGLLGCCLETEVPLLVNEFVK  183 (256)
Q Consensus       111 ~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~---~l~h~niv~l~~~~~~~~~~~lv~e~~~  183 (256)
                      +||+|+||.||++... +++.+|+|.+....   ......+.+|..++.   ..+|||++.+.+.+...+..+++|||++
T Consensus         1 ~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~   80 (279)
T cd05633           1 IIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMTYAFHTPDKLCFILDLMN   80 (279)
T ss_pred             CcccCCCeEEEEEEECCCCcEEEEEEEEccccccchHHHHHHHHHHHHHHHhhCCCCcEeEEEEEEecCCeEEEEEecCC
Confidence            4899999999999975 58899999875432   122233445544433   3479999999999999999999999999


Q ss_pred             CCCC----------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceeeeeeee
Q 047066          184 LPTI----------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQG  240 (256)
Q Consensus       184 ~~~l----------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~~~~G  240 (256)
                      +++|          ++.....++.|++             +||||+|||+++++.+||+|||++........   ....|
T Consensus        81 ~~~L~~~i~~~~~l~~~~~~~i~~qi~~al~~lH~~~ivH~dikp~Nil~~~~~~~~l~dfg~~~~~~~~~~---~~~~~  157 (279)
T cd05633          81 GGDLHYHLSQHGVFSEKEMRFYATEIILGLEHMHNRFVVYRDLKPANILLDEHGHVRISDLGLACDFSKKKP---HASVG  157 (279)
T ss_pred             CCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCcCCCCCCHHHEEECCCCCEEEccCCcceeccccCc---cCcCC
Confidence            8776          3344445555544             69999999999999999999999986543222   12348


Q ss_pred             cccc----ccc-ccCCCCCCC
Q 047066          241 TLGY----YLH-TSQGTLNKE  256 (256)
Q Consensus       241 t~~y----~~~-~~~~t~ksD  256 (256)
                      |+.|    ... +..++.++|
T Consensus       158 ~~~y~aPE~~~~~~~~~~~~D  178 (279)
T cd05633         158 THGYMAPEVLQKGTAYDSSAD  178 (279)
T ss_pred             CcCccCHHHhcCCCCCCchhh
Confidence            8888    232 344677776

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK3 (also known as beta-adrenergic receptor kinase 2) is wi

>cd07877 STKc_p38alpha_MAPK14 Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase

Probab=99.73  E-value=8.3e-17  Score=138.63  Aligned_cols=155  Identities=18%  Similarity=0.245  Sum_probs=115.0

Q ss_pred             HHHhhcCCCcccceeeeeCceEEEEEEE-CCCcEEEEEEecccC--hhHHHHHHHHHHHHHhCCCCcccceeeEEEEC--
Q 047066           98 ELKIATNNYAYDRMIGRGGYGTVFLGSL-SDNKAIAIKKSRIVY--QSQIEQCINKVVVLSQINHRNVVGLLGCCLET--  172 (256)
Q Consensus        98 ~~~~~~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~--  172 (256)
                      ++....++|++.+.||+|+||.||++.. .++..||+|++....  ....+.+.+|+.++++++||||+++.+++...  
T Consensus        11 ~~~~~~~~y~~~~~lg~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~Ei~~l~~l~h~~iv~~~~~~~~~~~   90 (345)
T cd07877          11 TIWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARS   90 (345)
T ss_pred             HHhhccCceEEEEEeeecCCeEEEEEEEcCCCeEEEEEEecCcchhhHHHHHHHHHHHHHHHcCCCcccceeeeeeeccc
Confidence            3444568899999999999999999985 468899999886432  22346688899999999999999999988643  


Q ss_pred             ----CEEEEEEecCCC--------CCCCHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceec
Q 047066          173 ----EVPLLVNEFVKL--------PTISWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLV  227 (256)
Q Consensus       173 ----~~~~lv~e~~~~--------~~l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~  227 (256)
                          +..+++++++.+        +.+++.....++.|++             +||+|+||++++++.+||+|||+++..
T Consensus        91 ~~~~~~~~lv~~~~~~~L~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~dlkp~NIll~~~~~~kl~dfg~~~~~  170 (345)
T cd07877          91 LEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHT  170 (345)
T ss_pred             ccccccEEEEehhcccCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeeecCCChHHEEEcCCCCEEEecccccccc
Confidence                346788887633        3356666666666655             699999999999999999999999865


Q ss_pred             CCCCceeeeeeeecccc----cc-cccCCCCCCC
Q 047066          228 PIDETQLSTMVQGTLGY----YL-HTSQGTLNKE  256 (256)
Q Consensus       228 ~~~~~~~~~~~~Gt~~y----~~-~~~~~t~ksD  256 (256)
                      ....    ....||+.|    .+ ....++.++|
T Consensus       171 ~~~~----~~~~~~~~y~aPE~~~~~~~~~~~~D  200 (345)
T cd07877         171 DDEM----TGYVATRWYRAPEIMLNWMHYNQTVD  200 (345)
T ss_pred             cccc----cccccCCCccCHHHHhCccCCCchhh
Confidence            3321    223467777    22 2245666666

Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14

>cd05078 PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=99.73  E-value=1.1e-17  Score=138.19  Aligned_cols=142  Identities=19%  Similarity=0.342  Sum_probs=106.2

Q ss_pred             ceeeeeCceEEEEEEECC--------CcEEEEEEecccChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEec
Q 047066          110 RMIGRGGYGTVFLGSLSD--------NKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEF  181 (256)
Q Consensus       110 ~~lg~G~~g~V~~~~~~~--------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~  181 (256)
                      +.||+|+||.||+|..+.        ...+++|..........+.+.+|+.+++.++|||++++++++...+..+++|||
T Consensus         1 ~~lg~G~~~~Vy~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~   80 (258)
T cd05078           1 ESLGQGTFTKIFKGIRREVGDYGELHKTEVLLKVLDKSHRNYSESFFEAASMMSQLSHKHLVLNYGVCVCGDESIMVQEY   80 (258)
T ss_pred             CCCCcccchhheeeeecccccccccccchhhHHhhcchhHHHHHHHHHHHHHHHhCCCCChhheeeEEEeCCCcEEEEec
Confidence            368999999999998632        234777876554445557788999999999999999999999998999999999


Q ss_pred             CCCCCC-----------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCc--------EEEEecCCceecCC
Q 047066          182 VKLPTI-----------SWEVRIRIAAETA-------------EDIKSINILLDDNYT--------TKVCDFGASKLVPI  229 (256)
Q Consensus       182 ~~~~~l-----------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~--------~ki~DFGla~~~~~  229 (256)
                      +++++|           ++...+.++.|++             +||||+||+++.++.        ++++|||++.....
T Consensus        81 ~~~g~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~iiH~dlkp~nili~~~~~~~~~~~~~~~l~d~g~~~~~~~  160 (258)
T cd05078          81 VKFGSLDTYLKKNKNLINISWKLEVAKQLAWALHFLEDKGLTHGNVCAKNVLLIREEDRKTGNPPFIKLSDPGISITVLP  160 (258)
T ss_pred             CCCCcHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCccceEEEecccccccCCCceEEecccccccccCC
Confidence            988765           4444455555555             699999999987764        69999999876543


Q ss_pred             CCceeeeeeeecccc----cccc-cCCCCCCC
Q 047066          230 DETQLSTMVQGTLGY----YLHT-SQGTLNKE  256 (256)
Q Consensus       230 ~~~~~~~~~~Gt~~y----~~~~-~~~t~ksD  256 (256)
                      .     ....|++.|    .+.+ ..++.++|
T Consensus       161 ~-----~~~~~~~~y~aPE~~~~~~~~~~~~D  187 (258)
T cd05078         161 K-----EILLERIPWVPPECIENPQNLSLAAD  187 (258)
T ss_pred             c-----hhccccCCccCchhccCCCCCCchhh
Confidence            2     223466777    3333 34566666

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity

>cd06634 STKc_TAO2 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2

Probab=99.73  E-value=7.7e-17  Score=136.61  Aligned_cols=148  Identities=23%  Similarity=0.339  Sum_probs=113.0

Q ss_pred             CCCcccceeeeeCceEEEEEEEC-CCcEEEEEEeccc---ChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEE
Q 047066          104 NNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIV---YQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVN  179 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~  179 (256)
                      ..|+..+.||+|+||.||+|... ++..+++|.+...   .....+++.+|+.+++.++|+|++++.+++...+..++++
T Consensus        15 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~   94 (308)
T cd06634          15 KLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLVM   94 (308)
T ss_pred             HHHHHHHheeeCCCEEEEEEEEcCCCcEEEEEEEecccccChHHHHHHHHHHHHHHhCCCCCcccEEEEEEcCCeeEEEE
Confidence            44677789999999999999975 5788999987532   2334467889999999999999999999999999999999


Q ss_pred             ecCCCC----------CCCHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceeee
Q 047066          180 EFVKLP----------TISWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLST  236 (256)
Q Consensus       180 e~~~~~----------~l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~  236 (256)
                      ||+.+.          .++......++.+++             +||+|+||+++.++.+||+|||++.......     
T Consensus        95 e~~~~~l~~~~~~~~~~l~~~~~~~~~~~l~~~l~~LH~~~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~~~~-----  169 (308)
T cd06634          95 EYCLGSASDLLEVHKKPLQEVEIAAVTHGALQGLAYLHSHNMIHRDVKAGNILLSEPGLVKLGDFGSASIMAPAN-----  169 (308)
T ss_pred             EccCCCHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHhEEECCCCcEEECCcccceeecCcc-----
Confidence            998642          234444444444443             6999999999999999999999998764321     


Q ss_pred             eeeecccc----cc---cccCCCCCCC
Q 047066          237 MVQGTLGY----YL---HTSQGTLNKE  256 (256)
Q Consensus       237 ~~~Gt~~y----~~---~~~~~t~ksD  256 (256)
                      ...|++.|    .+   ..+.++.++|
T Consensus       170 ~~~~~~~y~aPE~~~~~~~~~~~~~~D  196 (308)
T cd06634         170 XFVGTPYWMAPEVILAMDEGQYDGKVD  196 (308)
T ss_pred             cccCCccccCHHHHhhcccCCCCcccc
Confidence            23467777    22   2356677776

Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activatin

>cd07866 STKc_BUR1 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins

Probab=99.73  E-value=3.1e-17  Score=138.70  Aligned_cols=154  Identities=21%  Similarity=0.265  Sum_probs=114.1

Q ss_pred             cCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC--hhHHHHHHHHHHHHHhCCCCcccceeeEEEECC------
Q 047066          103 TNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY--QSQIEQCINKVVVLSQINHRNVVGLLGCCLETE------  173 (256)
Q Consensus       103 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~------  173 (256)
                      .++|++.+.||+|++|.||++..+ +++.+++|.+....  ......+.+|+++++.++||||+++++++....      
T Consensus         7 ~~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~   86 (311)
T cd07866           7 LRDYEILGKLGEGTFGEVYKARQIKTGRVVALKKILMHNEKDGFPITALREIKILKKLKHPNVVPLIDMAVERPDKSKRK   86 (311)
T ss_pred             cccEEEEEEeccCCCEEEEEEEECCCCcEEEEEEEEeccCCCCcchhHHHHHHHHHhcCCCCccchhhheeccccccccc
Confidence            368999999999999999999965 68899999875432  222245678999999999999999999876433      


Q ss_pred             --EEEEEEecCCC----------CCCCHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecC
Q 047066          174 --VPLLVNEFVKL----------PTISWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVP  228 (256)
Q Consensus       174 --~~~lv~e~~~~----------~~l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~  228 (256)
                        ..++++||+..          ..+++.....++.+++             +||+|+||++++++.+||+|||+++...
T Consensus        87 ~~~~~lv~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~l~~al~~lH~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~  166 (311)
T cd07866          87 RGSVYMVTPYMDHDLSGLLENPSVKLTESQIKCYMLQLLEGINYLHENHILHRDIKAANILIDNQGILKIADFGLARPYD  166 (311)
T ss_pred             CceEEEEEecCCcCHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEECCCCCEEECcCccchhcc
Confidence              46999999864          3456666666666655             5999999999999999999999998654


Q ss_pred             CCCce----------eeeeeeecccc---c-c-cccCCCCCCC
Q 047066          229 IDETQ----------LSTMVQGTLGY---Y-L-HTSQGTLNKE  256 (256)
Q Consensus       229 ~~~~~----------~~~~~~Gt~~y---~-~-~~~~~t~ksD  256 (256)
                      .....          ..+...|++.|   + + ....++.++|
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~D  209 (311)
T cd07866         167 GPPPNPKGGGGGGTRKYTNLVVTRWYRPPELLLGERRYTTAVD  209 (311)
T ss_pred             CCCcccccCCcccccccccceeccCcCChHHhhCCCccCchhH
Confidence            32211          11234577777   2 2 2334677776

Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic

>KOG2345 consensus Serine/threonine protein kinase/TGF-beta stimulated factor [Transcription; Lipid transport and metabolism; Signal transduction mechanisms]

Probab=99.73  E-value=4.9e-18  Score=134.01  Aligned_cols=131  Identities=27%  Similarity=0.356  Sum_probs=112.5

Q ss_pred             HHHHhhcCCCcccceeeeeCceEEEEEE-ECCCcEEEEEEecccChhHHHHHHHHHHHHHhCCCCcccceeeEEEE----
Q 047066           97 GELKIATNNYAYDRMIGRGGYGTVFLGS-LSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLE----  171 (256)
Q Consensus        97 ~~~~~~~~~~~~~~~lg~G~~g~V~~~~-~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~----  171 (256)
                      +.+.+..++|.+.+.||+|+|+.|+.+. ..++..+|+|++.....++.+..++|++..++++|||+++++++...    
T Consensus        14 ~tv~In~~Ryri~~~LgeGGfsfv~LV~~~s~~~~YAlKkI~c~~~~~~e~~~rEid~~rkf~s~~vl~l~dh~l~~~~D   93 (302)
T KOG2345|consen   14 GTVIINNKRYRIQRLLGEGGFSFVDLVKGLSTGHLYALKKILCHSQEDIEEALREIDNHRKFNSPNVLRLVDHQLREEKD   93 (302)
T ss_pred             CcEEEcCceEEEeeeecCCCceeeeeecccCcccchhhheeeccchHHHHHHHHHHHHHHhhCCcchHHHHHHHHHhhcc
Confidence            3455677899999999999999999998 45789999999887777788999999999999999999999988764    


Q ss_pred             -CCEEEEEEecCCCCCC--------------CHHHHHHHHHHHH---------------hccCCCcEEEcCCCcEEEEec
Q 047066          172 -TEVPLLVNEFVKLPTI--------------SWEVRIRIAAETA---------------EDIKSINILLDDNYTTKVCDF  221 (256)
Q Consensus       172 -~~~~~lv~e~~~~~~l--------------~~~~~~~~~~~i~---------------rdlk~~NiLi~~~~~~ki~DF  221 (256)
                       ....|++++|...|+|              ++.+.++++.+++               |||||.|||+++.+.+++.||
T Consensus        94 ~~~~~yll~Pyy~~Gsl~d~i~~~k~kg~~~sE~~iL~if~gic~gL~~lH~~~~~yAH~DiKP~NILls~~~~~vl~D~  173 (302)
T KOG2345|consen   94 GKHEAYLLLPYYKRGSLLDEIERLKIKGNFVSEAQILWIFLGICRGLEALHEKEPPYAHRDIKPANILLSDSGLPVLMDL  173 (302)
T ss_pred             CceeEEEEeehhccccHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHhccCCcccccCCCcceeEecCCCceEEEec
Confidence             3459999999987754              6666777777766               599999999999999999999


Q ss_pred             CCceec
Q 047066          222 GASKLV  227 (256)
Q Consensus       222 Gla~~~  227 (256)
                      |.+...
T Consensus       174 GS~~~a  179 (302)
T KOG2345|consen  174 GSATQA  179 (302)
T ss_pred             cCcccc
Confidence            998764

>cd08530 STKc_CNK2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

Probab=99.73  E-value=3.7e-17  Score=134.22  Aligned_cols=149  Identities=26%  Similarity=0.371  Sum_probs=115.5

Q ss_pred             CCcccceeeeeCceEEEEEEEC-CCcEEEEEEeccc--ChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEec
Q 047066          105 NYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIV--YQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEF  181 (256)
Q Consensus       105 ~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~  181 (256)
                      +|++.+.||+|++|.||++..+ ++..+++|.+...  .......+.+|+.+++.++|+||+++.+++......++++||
T Consensus         1 ~y~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~   80 (256)
T cd08530           1 DFKVLKKLGKGSYGSVYKVKRLSDNQFYALKEVDLGSMSQKEREDAVNEIRILASVNHPNIISYKEAFLDGNKLCIVMEY   80 (256)
T ss_pred             CceEeeeecCCCceeEEEEEECCCCCEEEEEEEehhhccHHHHHHHHHHHHHHHhCCCCCchhhhhhhccCCEEEEEehh
Confidence            4778889999999999999865 6789999987643  234456788999999999999999999999999999999999


Q ss_pred             CCCCCCC--------------HHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCcee
Q 047066          182 VKLPTIS--------------WEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQL  234 (256)
Q Consensus       182 ~~~~~l~--------------~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~  234 (256)
                      +++++|.              +.....++.+++             +||+|.||++++++.+||+|||++.......   
T Consensus        81 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lh~~~i~h~~l~~~ni~~~~~~~~kl~d~g~~~~~~~~~---  157 (256)
T cd08530          81 APFGDLSKAISKRKKKRKLIPEQEIWRIFIQLLRGLQALHEQKILHRDLKSANILLVANDLVKIGDLGISKVLKKNM---  157 (256)
T ss_pred             cCCCCHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhCCcccCCCCcceEEEecCCcEEEeeccchhhhccCC---
Confidence            9886653              233334444443             5999999999999999999999998775441   


Q ss_pred             eeeeeecccc----cccccCCCCCCC
Q 047066          235 STMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       235 ~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      .....|++.|    ...+..++.++|
T Consensus       158 ~~~~~~~~~~~~Pe~~~~~~~~~~~D  183 (256)
T cd08530         158 AKTQIGTPHYMAPEVWKGRPYSYKSD  183 (256)
T ss_pred             cccccCCccccCHHHHCCCCCCchhh
Confidence            1223467777    445566666666

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, an

>cd06633 STKc_TAO3 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3

Probab=99.73  E-value=2.1e-16  Score=134.33  Aligned_cols=146  Identities=25%  Similarity=0.348  Sum_probs=112.0

Q ss_pred             CcccceeeeeCceEEEEEEEC-CCcEEEEEEeccc---ChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEec
Q 047066          106 YAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIV---YQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEF  181 (256)
Q Consensus       106 ~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~  181 (256)
                      |...+.||+|+||.||+|... ++..+++|.+...   .......+.+|+.+++.++|||++++++++.+.+..+++|||
T Consensus        23 ~~~~~~lg~g~~g~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~  102 (313)
T cd06633          23 FVGLHEIGHGSFGAVYFATNSHTNEVVAVKKMSYSGKQTNEKWQDIIKEVKFLQQLKHPNTIEYKGCYLKEHTAWLVMEY  102 (313)
T ss_pred             hhcceeeccCCCeEEEEEEECCCCcEEEEEEEeccccCchHHHHHHHHHHHHHHhCCCCCCccEEEEEEeCCEEEEEEec
Confidence            555678999999999999864 6889999987543   233446788999999999999999999999999999999999


Q ss_pred             CCC----------CCCCHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceeeeee
Q 047066          182 VKL----------PTISWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMV  238 (256)
Q Consensus       182 ~~~----------~~l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~~~  238 (256)
                      +.+          +.+++.....++.+++             +||+|+||+++.++.+||+|||++......     +..
T Consensus       103 ~~~~l~~~l~~~~~~l~~~~~~~~~~qi~~al~~LH~~gi~H~dl~p~nili~~~~~~kL~dfg~~~~~~~~-----~~~  177 (313)
T cd06633         103 CLGSASDLLEVHKKPLQEVEIAAITHGALQGLAYLHSHNMIHRDIKAGNILLTEPGQVKLADFGSASKSSPA-----NSF  177 (313)
T ss_pred             CCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCChhhEEECCCCCEEEeecCCCcccCCC-----CCc
Confidence            864          2355555555555554             699999999999999999999998754322     223


Q ss_pred             eecccc----cc---cccCCCCCCC
Q 047066          239 QGTLGY----YL---HTSQGTLNKE  256 (256)
Q Consensus       239 ~Gt~~y----~~---~~~~~t~ksD  256 (256)
                      .|++.|    .+   ..+.++.++|
T Consensus       178 ~~~~~y~aPE~~~~~~~~~~~~~sD  202 (313)
T cd06633         178 VGTPYWMAPEVILAMDEGQYDGKVD  202 (313)
T ss_pred             cccccccChhhccccCCCCCCchhh
Confidence            477777    22   2455666666

Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a co

>KOG0596 consensus Dual specificity; serine/threonine and tyrosine kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.73  E-value=1.3e-17  Score=144.59  Aligned_cols=144  Identities=24%  Similarity=0.350  Sum_probs=114.9

Q ss_pred             HhhcCCCcccceeeeeCceEEEEEEECCCcEEEEEEec--ccChhHHHHHHHHHHHHHhC-CCCcccceeeEEEECCEEE
Q 047066          100 KIATNNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSR--IVYQSQIEQCINKVVVLSQI-NHRNVVGLLGCCLETEVPL  176 (256)
Q Consensus       100 ~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~--~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~  176 (256)
                      .+..+.|++++.||.|+.++||++...+.+.+|+|++.  ..+......|.+|+..|.+| .|.+|+++++|-..++.+|
T Consensus       357 ~Vkg~~Yeilk~iG~GGSSkV~kV~~s~~~iyalkkv~~~~~D~qtl~gy~nEI~lL~KLkg~~~IIqL~DYEv~d~~lY  436 (677)
T KOG0596|consen  357 KVKGREYEILKQIGSGGSSKVFKVLNSDKQIYALKKVVLLEADNQTLDGYRNEIALLNKLKGHDKIIQLYDYEVTDGYLY  436 (677)
T ss_pred             EECcchhhHHHhhcCCCcceeeeeecCCCcchhhhHHHHhhcCHHHHHHHHHHHHHHHHhcCCceEEEEeeeeccCceEE
Confidence            44556789999999999999999998888889998764  34566778999999999999 6999999999999999999


Q ss_pred             EEEecCCC----------CCCC-------HHHHH------HHHHHHHhccCCCcEEEcCCCcEEEEecCCceecCCCCce
Q 047066          177 LVNEFVKL----------PTIS-------WEVRI------RIAAETAEDIKSINILLDDNYTTKVCDFGASKLVPIDETQ  233 (256)
Q Consensus       177 lv~e~~~~----------~~l~-------~~~~~------~~~~~i~rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~  233 (256)
                      |||||-+.          +...       |.+.+      |....||.||||.|+|+- .|.+||+|||+|..+..+.+.
T Consensus       437 mvmE~Gd~DL~kiL~k~~~~~~~~~lk~ywkqML~aV~~IH~~gIVHSDLKPANFLlV-kG~LKLIDFGIA~aI~~DTTs  515 (677)
T KOG0596|consen  437 MVMECGDIDLNKILKKKKSIDPDWFLKFYWKQMLLAVKTIHQHGIVHSDLKPANFLLV-KGRLKLIDFGIANAIQPDTTS  515 (677)
T ss_pred             EEeecccccHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHhceeecCCCcccEEEE-eeeEEeeeechhcccCccccc
Confidence            99998754          2222       22223      333334469999999995 468999999999998777655


Q ss_pred             ee-eeeeecccc
Q 047066          234 LS-TMVQGTLGY  244 (256)
Q Consensus       234 ~~-~~~~Gt~~y  244 (256)
                      .. ...+||+.|
T Consensus       516 I~kdsQvGT~NY  527 (677)
T KOG0596|consen  516 IVKDSQVGTVNY  527 (677)
T ss_pred             eeeccccCcccc
Confidence            43 345799999

>cd05611 STKc_Rim15_like Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases

Probab=99.72  E-value=8.2e-17  Score=132.81  Aligned_cols=142  Identities=22%  Similarity=0.246  Sum_probs=104.7

Q ss_pred             ceeeeeCceEEEEEEEC-CCcEEEEEEecccC---hhHHHHHHHHHHHHH-hCCCCcccceeeEEEECCEEEEEEecCCC
Q 047066          110 RMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY---QSQIEQCINKVVVLS-QINHRNVVGLLGCCLETEVPLLVNEFVKL  184 (256)
Q Consensus       110 ~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~-~l~h~niv~l~~~~~~~~~~~lv~e~~~~  184 (256)
                      +.||+|+||.||+|... +++.+|+|......   ......+..|..++. ..+|+|++++++++...+..++++||+++
T Consensus         2 ~~l~~g~~~~v~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~   81 (260)
T cd05611           2 KPISKGAFGSVYLAKKRSTGDYFAIKVLKKSDMIAKNQVTNVKAERAIMMIQGESPYVAKLYYSFQSKDYLYLVMEYLNG   81 (260)
T ss_pred             ccCCcCCCeeEEEEEecCCCCeEEEEEecchhhhHHHHHHHHHHHHHHHhhcCCCCCeeeeeeeEEcCCeEEEEEeccCC
Confidence            56899999999999864 68899999876432   222234555655544 45899999999999999999999999988


Q ss_pred             CCC----------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceeeeeeeec
Q 047066          185 PTI----------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGT  241 (256)
Q Consensus       185 ~~l----------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~~~~Gt  241 (256)
                      ++|          +......++.|++             +||+|+||++++++.+||+|||+++.....     ....|+
T Consensus        82 ~~L~~~l~~~~~~~~~~~~~i~~qi~~aL~~lH~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~-----~~~~~~  156 (260)
T cd05611          82 GDCASLIKTLGGLPEDWAKQYIAEVVLGVEDLHQRGIIHRDIKPENLLIDQTGHLKLTDFGLSRNGLEN-----KKFVGT  156 (260)
T ss_pred             CCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeEECCCCcEEEeecccceecccc-----ccCCCC
Confidence            664          4444455555544             599999999999999999999999865331     123466


Q ss_pred             ccc----cccccCCCCCCC
Q 047066          242 LGY----YLHTSQGTLNKE  256 (256)
Q Consensus       242 ~~y----~~~~~~~t~ksD  256 (256)
                      +.|    ...++.++.++|
T Consensus       157 ~~y~~pe~~~~~~~~~~~D  175 (260)
T cd05611         157 PDYLAPETILGVGDDKMSD  175 (260)
T ss_pred             cCccChhhhcCCCCcchhh
Confidence            666    344445677766

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a do

>cd06606 STKc_MAPKKK Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

Probab=99.72  E-value=1.6e-16  Score=130.28  Aligned_cols=152  Identities=23%  Similarity=0.344  Sum_probs=117.6

Q ss_pred             CCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC--hhHHHHHHHHHHHHHhCCCCcccceeeEEEEC--CEEEEEE
Q 047066          105 NYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY--QSQIEQCINKVVVLSQINHRNVVGLLGCCLET--EVPLLVN  179 (256)
Q Consensus       105 ~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~--~~~~lv~  179 (256)
                      +|+..+.||+|++|.||+|... ++..+++|......  ....+.+.+|+..+++++|||++++++.+...  +..++++
T Consensus         1 ~~~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~lv~   80 (260)
T cd06606           1 EWTRGELLGRGSFGSVYLALDKDTGELMAVKSVELSGDSEEELEALEREIRILSSLQHPNIVRYYGSERDEEKNTLNIFL   80 (260)
T ss_pred             CceeeeEeeecCceEEEEEEECCCCcEEEEEEeeccccchHHHHHHHHHHHHHHHcCCCCEeeEEEEEecCCCCeEEEEE
Confidence            3677789999999999999976 68899999876544  34567889999999999999999999999988  8899999


Q ss_pred             ecCCCCCC----------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCce-ee
Q 047066          180 EFVKLPTI----------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQ-LS  235 (256)
Q Consensus       180 e~~~~~~l----------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~-~~  235 (256)
                      ||+++++|          ++.....++.+++             +||+|+||+++.++.++|+|||.+......... ..
T Consensus        81 e~~~~~~L~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~~~h~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~~~~~  160 (260)
T cd06606          81 EYVSGGSLSSLLKKFGKLPEPVIRKYTRQILEGLAYLHSNGIVHRDIKGANILVDSDGVVKLADFGCAKRLGDIETGEGT  160 (260)
T ss_pred             EecCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCCHHHEEEcCCCCEEEcccccEEecccccccccc
Confidence            99987654          4444455555544             599999999999999999999999887654321 11


Q ss_pred             eeeeecccc----cccccCCCCCCC
Q 047066          236 TMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       236 ~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      ....++..|    ...+...+.++|
T Consensus       161 ~~~~~~~~y~~pE~~~~~~~~~~~D  185 (260)
T cd06606         161 GSVRGTPYWMAPEVIRGEEYGRAAD  185 (260)
T ss_pred             cCCCCCccccCHhhhcCCCCCchhh
Confidence            223466666    344444666665

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKK

>cd07879 STKc_p38delta_MAPK13 Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase

Probab=99.72  E-value=1e-16  Score=137.89  Aligned_cols=149  Identities=20%  Similarity=0.275  Sum_probs=111.6

Q ss_pred             CCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC--hhHHHHHHHHHHHHHhCCCCcccceeeEEEECC------E
Q 047066          104 NNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY--QSQIEQCINKVVVLSQINHRNVVGLLGCCLETE------V  174 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~------~  174 (256)
                      .+|...+.||+|+||.||+|... ++..+|+|.+....  ......+.+|+.+++.++||||+++++++....      .
T Consensus        15 ~~y~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~~   94 (342)
T cd07879          15 ERYTSLKQVGSGAYGSVCSAIDKRTGEKVAIKKLSRPFQSEIFAKRAYRELTLLKHMQHENVIGLLDVFTSAVSGDEFQD   94 (342)
T ss_pred             cceEEEEEeeecCCeEEEEEEeCCCCcEEEEEEecCccccccchhHHHHHHHHHHhcCCCCccchhheecccccCCCCce
Confidence            57899999999999999999964 68899999876432  223356889999999999999999999987542      4


Q ss_pred             EEEEEecCCC-------CCCCHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCcee
Q 047066          175 PLLVNEFVKL-------PTISWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQL  234 (256)
Q Consensus       175 ~~lv~e~~~~-------~~l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~  234 (256)
                      .++++||+..       ..+++.....++.+++             +||+|+||+++.++.+||+|||+++......   
T Consensus        95 ~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~~i~H~dlkp~NIll~~~~~~kL~dfg~~~~~~~~~---  171 (342)
T cd07879          95 FYLVMPYMQTDLQKIMGHPLSEDKVQYLVYQMLCGLKYIHSAGIIHRDLKPGNLAVNEDCELKILDFGLARHADAEM---  171 (342)
T ss_pred             EEEEecccccCHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCCEEEeeCCCCcCCCCCC---
Confidence            6899999854       2355555555555444             6999999999999999999999998653321   


Q ss_pred             eeeeeecccc----ccc-ccCCCCCCC
Q 047066          235 STMVQGTLGY----YLH-TSQGTLNKE  256 (256)
Q Consensus       235 ~~~~~Gt~~y----~~~-~~~~t~ksD  256 (256)
                       ....||+.|    .+. ...++.++|
T Consensus       172 -~~~~~~~~y~aPE~~~~~~~~~~~~D  197 (342)
T cd07879         172 -TGYVVTRWYRAPEVILNWMHYNQTVD  197 (342)
T ss_pred             -CCceeeecccChhhhcCccccCchHH
Confidence             223467777    222 245666666

Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13

>PLN03224 probable serine/threonine protein kinase; Provisional

Probab=99.72  E-value=6.7e-17  Score=144.34  Aligned_cols=143  Identities=18%  Similarity=0.246  Sum_probs=97.9

Q ss_pred             hcCCCcccceeeeeCceEEEEEEE-----------------CCCcEEEEEEecccChhHHHHH--------------HHH
Q 047066          102 ATNNYAYDRMIGRGGYGTVFLGSL-----------------SDNKAIAIKKSRIVYQSQIEQC--------------INK  150 (256)
Q Consensus       102 ~~~~~~~~~~lg~G~~g~V~~~~~-----------------~~~~~vavK~~~~~~~~~~~~~--------------~~E  150 (256)
                      ..++|.+.+.||+|+||.||+|..                 ..++.||||++........++|              ..|
T Consensus       143 ~~d~F~i~~~LG~GgFG~VYkG~~~~~~~~~v~~~~~~~~~~~~r~VAVK~l~~~~~~~~~~fl~e~~~~~~~~e~~~vE  222 (507)
T PLN03224        143 SSDDFQLRDKLGGGNFGITFEGLRLQADDQGVTQRSKLTAEQKKRRVVLKRVNMDRQGVRQDFLKTGTLAKGSAETGMVE  222 (507)
T ss_pred             cccCceEeeEeecCCCeEEEEEEecccccchhhhhccccccccCceEEEEEecccchhhHHHHHhhhhhhhcccchhHHH
Confidence            467899999999999999999963                 2356799999865433322333              346


Q ss_pred             HHHHHhCCCCcc-----cceeeEEEE--------CCEEEEEEecCCCCCCCH----------------------------
Q 047066          151 VVVLSQINHRNV-----VGLLGCCLE--------TEVPLLVNEFVKLPTISW----------------------------  189 (256)
Q Consensus       151 ~~~l~~l~h~ni-----v~l~~~~~~--------~~~~~lv~e~~~~~~l~~----------------------------  189 (256)
                      +..+.+++|.++     +++.++|..        .+..++|+||+++++|..                            
T Consensus       223 ~~~l~~l~~~~l~~~~~~~~lg~~~~~~~~g~~~~~~~~LV~Ey~~~gsL~~~L~~~~~~~~~~L~e~l~~g~~l~~~~~  302 (507)
T PLN03224        223 AYMCAKIKRNPIAAASCAEYLGYFTSNTADGAFTKGSQWLVWKFESDATLGDALDGKLGPFPGCLEEFMMAGKKIPDNMP  302 (507)
T ss_pred             HHHHHHhhcccchhhhhhhhhhhcccccccccccCCceEEEEEcCCCCcHHHHHhhccCCCcchHHHHHhcCCchhhhcc
Confidence            677777766554     567777653        356899999998866522                            


Q ss_pred             ------HHHHHHHHHH-------------HhccCCCcEEEcCCCcEEEEecCCceecCCCCceeeeeeeecccc
Q 047066          190 ------EVRIRIAAET-------------AEDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTLGY  244 (256)
Q Consensus       190 ------~~~~~~~~~i-------------~rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~~~~Gt~~y  244 (256)
                            .....++.++             ||||||+|||++.++.+||+|||+++.+............+|+.|
T Consensus       303 ~~~~~~~~~~~i~~ql~~aL~~lH~~~ivHrDLKp~NILl~~~~~~kL~DFGla~~~~~~~~~~~~~g~~tp~Y  376 (507)
T PLN03224        303 QDKRDINVIKGVMRQVLTGLRKLHRIGIVHRDIKPENLLVTVDGQVKIIDFGAAVDMCTGINFNPLYGMLDPRY  376 (507)
T ss_pred             cccCCHHHHHHHHHHHHHHHHHHHHCCeecCCCchHhEEECCCCcEEEEeCcCccccccCCccCccccCCCcce
Confidence                  1222333333             379999999999999999999999986543322111122347777

>cd05044 PTKc_c-ros Catalytic domain of the Protein Tyrosine Kinase, C-ros

Probab=99.72  E-value=3.8e-17  Score=135.38  Aligned_cols=147  Identities=22%  Similarity=0.349  Sum_probs=108.7

Q ss_pred             ceeeeeCceEEEEEEECC-------CcEEEEEEecccC-hhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEec
Q 047066          110 RMIGRGGYGTVFLGSLSD-------NKAIAIKKSRIVY-QSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEF  181 (256)
Q Consensus       110 ~~lg~G~~g~V~~~~~~~-------~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~  181 (256)
                      +.||+|+||.||+|...+       +..+++|.+.... ......+.+|+.+++.++||||+++++++...+..+++|||
T Consensus         1 ~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~   80 (269)
T cd05044           1 NFLGSGAFGEVYEGTATDILGPGSGPIRVAVKTLRKGATDQEKKEFLKEAHLMSNFNHPNIVKLLGVCLLNEPQYIIMEL   80 (269)
T ss_pred             CccccccceeEEeeeecccccCcccceeehhhhhhcccchhhHHHHHHHHHHHHhcCCCCeeeEeeeecCCCCeEEEEec
Confidence            368999999999998642       2578888765432 34456789999999999999999999999998999999999


Q ss_pred             CCCCCCC-----------------HHHHHHHHHHHH-------------hccCCCcEEEcCCC-----cEEEEecCCcee
Q 047066          182 VKLPTIS-----------------WEVRIRIAAETA-------------EDIKSINILLDDNY-----TTKVCDFGASKL  226 (256)
Q Consensus       182 ~~~~~l~-----------------~~~~~~~~~~i~-------------rdlk~~NiLi~~~~-----~~ki~DFGla~~  226 (256)
                      +++++|.                 +...+.++.+++             +||+|+||+++.+.     .+|++|||+++.
T Consensus        81 ~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~i~H~dl~p~nil~~~~~~~~~~~~~l~dfg~~~~  160 (269)
T cd05044          81 MEGGDLLSYLRDARVERFGPPLLTLKELLDICLDVAKGCVYLEQMHFIHRDLAARNCLVSEKGYDADRVVKIGDFGLARD  160 (269)
T ss_pred             cCCCcHHHHHHHhhhcccCCccccHHHHHHHHHHHHHHHHHHHhCCcccCCCChheEEEecCCCCCCcceEECCcccccc
Confidence            9887653                 233344555443             59999999999877     899999999987


Q ss_pred             cCCCCcee-eeeeeecccc----cccccCCCCCCC
Q 047066          227 VPIDETQL-STMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       227 ~~~~~~~~-~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      +....... .....++..|    ++.++.++.++|
T Consensus       161 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~D  195 (269)
T cd05044         161 IYKSDYYRKEGEGLLPVRWMAPESLLDGKFTTQSD  195 (269)
T ss_pred             cccccccccCcccCCCccccCHHHHccCCcccchh
Confidence            64332211 1112245556    555677777776

Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male

>cd07854 STKc_MAPK4_6 Catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases 4 and 6

Probab=99.72  E-value=6.1e-17  Score=139.28  Aligned_cols=153  Identities=20%  Similarity=0.298  Sum_probs=113.9

Q ss_pred             CCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccChhHHHHHHHHHHHHHhCCCCcccceeeEEEEC----------
Q 047066          104 NNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLET----------  172 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~----------  172 (256)
                      .+|.+.+.||.|+||.||+|... ++..|++|.+........+.+.+|+++++.++||||+++++.+...          
T Consensus         5 ~~y~~~~~Lg~g~~g~vy~~~~~~~~~~v~iK~i~~~~~~~~~~~~~Ei~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~   84 (342)
T cd07854           5 SRYMDLRPLGCGSNGLVFSAVDSDCDKRVAVKKIVLTDPQSVKHALREIKIIRRLDHDNIVKVYEVLGPSGSDLTEDVGS   84 (342)
T ss_pred             cceEEEEEecCCCCEEEEEEEECCCCcEEEEEEEecCCCchHHHHHHHHHHHHhcCCCcchhhHhhhccccccccccccc
Confidence            68899999999999999999865 6889999988665555557788999999999999999999776543          


Q ss_pred             ----CEEEEEEecCCC--------CCCCHHHHHHHHHHHH-------------hccCCCcEEEc-CCCcEEEEecCCcee
Q 047066          173 ----EVPLLVNEFVKL--------PTISWEVRIRIAAETA-------------EDIKSINILLD-DNYTTKVCDFGASKL  226 (256)
Q Consensus       173 ----~~~~lv~e~~~~--------~~l~~~~~~~~~~~i~-------------rdlk~~NiLi~-~~~~~ki~DFGla~~  226 (256)
                          ...++++||+++        +.+++.....++.|++             +||||+||+++ +++.+||+|||+++.
T Consensus        85 ~~~~~~~~lv~e~~~~~L~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~givH~dikp~Nili~~~~~~~kl~dfg~~~~  164 (342)
T cd07854          85 LTELNSVYIVQEYMETDLANVLEQGPLSEEHARLFMYQLLRGLKYIHSANVLHRDLKPANVFINTEDLVLKIGDFGLARI  164 (342)
T ss_pred             ccccceEEEEeecccccHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEEEcCCCceEEECCccccee
Confidence                357899999975        3455566666666554             69999999997 456899999999987


Q ss_pred             cCCCCce--eeeeeeecccc-----cccccCCCCCCC
Q 047066          227 VPIDETQ--LSTMVQGTLGY-----YLHTSQGTLNKE  256 (256)
Q Consensus       227 ~~~~~~~--~~~~~~Gt~~y-----~~~~~~~t~ksD  256 (256)
                      +......  ......|+..|     ...+..++.++|
T Consensus       165 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~D  201 (342)
T cd07854         165 VDPHYSHKGYLSEGLVTKWYRSPRLLLSPNNYTKAID  201 (342)
T ss_pred             cCCccccccccccccccccccCHHHHhCccccCchhh
Confidence            6432111  11222467677     223345666666

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK4/6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. MAPK4 is also called ERK4 or p63MAPK, while MAPK6 is also called ERK3 or p97MAPK. MAPK4 and MAPK6 are atypical MAPKs that are not regulated by MAP2Ks. MAPK6 is expressed ubiquitously with highest amounts in brain and skeletal muscle. It may be involved in the control of cell differentiation by negatively regulating cell cycle progressi

>cd07856 STKc_Sty1_Hog1 Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1

Probab=99.72  E-value=7.8e-17  Score=137.87  Aligned_cols=151  Identities=22%  Similarity=0.322  Sum_probs=111.0

Q ss_pred             hcCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC--hhHHHHHHHHHHHHHhCCCCcccceeeEEEE-CCEEEE
Q 047066          102 ATNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY--QSQIEQCINKVVVLSQINHRNVVGLLGCCLE-TEVPLL  177 (256)
Q Consensus       102 ~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~-~~~~~l  177 (256)
                      ..++|++.+.||.|+||.||++... +++.+|+|.+....  ....+.+.+|+.+++.++|||++++.+++.. .+..++
T Consensus         8 ~~~~y~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~l   87 (328)
T cd07856           8 ITNRYVDLQPVGMGAFGLVCSARDQLTGQNVAIKKIMKPFSTPVLAKRTYRELKLLKHLRHENIISLSDIFISPLEDIYF   87 (328)
T ss_pred             cccceEEEEeecccCCeEEEEEEECCCCCEEEEEEecccccccchhHHHHHHHHHHHhcCCCCeeeEeeeEecCCCcEEE
Confidence            4578999999999999999999865 78899999875322  2334678899999999999999999999875 567899


Q ss_pred             EEecCCC--------CCCCHHHHHHHHHHH-------------HhccCCCcEEEcCCCcEEEEecCCceecCCCCceeee
Q 047066          178 VNEFVKL--------PTISWEVRIRIAAET-------------AEDIKSINILLDDNYTTKVCDFGASKLVPIDETQLST  236 (256)
Q Consensus       178 v~e~~~~--------~~l~~~~~~~~~~~i-------------~rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~  236 (256)
                      ++||+.+        +.++......++.++             |+||+|+||++++++.+||+|||++.......    .
T Consensus        88 v~e~~~~~L~~~~~~~~~~~~~~~~~~~ql~~aL~~LH~~~iiH~dl~p~Nili~~~~~~~l~dfg~~~~~~~~~----~  163 (328)
T cd07856          88 VTELLGTDLHRLLTSRPLEKQFIQYFLYQILRGLKYVHSAGVVHRDLKPSNILINENCDLKICDFGLARIQDPQM----T  163 (328)
T ss_pred             EeehhccCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEeECCCCCEEeCccccccccCCCc----C
Confidence            9999853        233433333444443             37999999999999999999999998653321    1


Q ss_pred             eeeecccc----cccc-cCCCCCCC
Q 047066          237 MVQGTLGY----YLHT-SQGTLNKE  256 (256)
Q Consensus       237 ~~~Gt~~y----~~~~-~~~t~ksD  256 (256)
                      ...+++.|    .+.+ ..++.++|
T Consensus       164 ~~~~~~~y~aPE~~~~~~~~~~~~D  188 (328)
T cd07856         164 GYVSTRYYRAPEIMLTWQKYDVEVD  188 (328)
T ss_pred             CCcccccccCceeeeccCCcCcHHH
Confidence            12355556    2222 34566655

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and U

>cd07838 STKc_CDK4_6_like Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases

Probab=99.72  E-value=2.1e-16  Score=132.02  Aligned_cols=149  Identities=28%  Similarity=0.387  Sum_probs=112.7

Q ss_pred             CcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC--hhHHHHHHHHHHHHHhC---CCCcccceeeEEEECCE-----
Q 047066          106 YAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY--QSQIEQCINKVVVLSQI---NHRNVVGLLGCCLETEV-----  174 (256)
Q Consensus       106 ~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l---~h~niv~l~~~~~~~~~-----  174 (256)
                      |++.+.||+|+||.||++..+ +++.+|+|.++...  ......+.+|+.++..+   +|||++++++++...+.     
T Consensus         1 y~~~~~l~~g~~~~v~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~~~~~~~~   80 (287)
T cd07838           1 YEELAEIGEGAYGTVYKARDLNTGRFVALKKVRVPLSEEGIPLSTLREIALLKQLESFEHPNIVRLLDVCHGPRTDRELK   80 (287)
T ss_pred             CeEEEEecccCceEEEEEEECCCCCEEEEEEeccccccchhhhhHHHHHHHHHHhhccCCCCcceEEEEEeeccCCCCce
Confidence            567789999999999999986 48899999886432  22234566788777665   59999999999998776     


Q ss_pred             EEEEEecCCC-----------CCCCHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCC
Q 047066          175 PLLVNEFVKL-----------PTISWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPID  230 (256)
Q Consensus       175 ~~lv~e~~~~-----------~~l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~  230 (256)
                      .+++|||+.+           ..+++.....++.+++             +||+|+||+++.++.+||+|||++..+...
T Consensus        81 ~~l~~e~~~~~l~~~l~~~~~~~l~~~~~~~~~~~i~~al~~LH~~~i~h~~l~~~nili~~~~~~~l~dfg~~~~~~~~  160 (287)
T cd07838          81 LTLVFEHVDQDLATYLSKCPKPGLPPETIKDLMRQLLRGVDFLHSHRIVHRDLKPQNILVTSDGQVKIADFGLARIYSFE  160 (287)
T ss_pred             eEEEehhcccCHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHHHCCeeeccCChhhEEEccCCCEEEeccCcceeccCC
Confidence            9999999864           2356666666776655             599999999999999999999999886543


Q ss_pred             Cceeeeeeeecccc----cccccCCCCCCC
Q 047066          231 ETQLSTMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       231 ~~~~~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      ...  ....+++.|    .+.+..++.++|
T Consensus       161 ~~~--~~~~~~~~~~~PE~~~~~~~~~~~D  188 (287)
T cd07838         161 MAL--TSVVVTLWYRAPEVLLQSSYATPVD  188 (287)
T ss_pred             ccc--ccccccccccChHHhccCCCCCcch
Confidence            221  223467777    455566677776

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both

>PTZ00024 cyclin-dependent protein kinase; Provisional

Probab=99.72  E-value=5.9e-17  Score=138.84  Aligned_cols=125  Identities=23%  Similarity=0.357  Sum_probs=99.3

Q ss_pred             CCCc-ccceeeeeCceEEEEEEEC-CCcEEEEEEecccChhH--------------HHHHHHHHHHHHhCCCCcccceee
Q 047066          104 NNYA-YDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVYQSQ--------------IEQCINKVVVLSQINHRNVVGLLG  167 (256)
Q Consensus       104 ~~~~-~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~--------------~~~~~~E~~~l~~l~h~niv~l~~  167 (256)
                      ++|. +.+.||.|+||.||++..+ +++.+|+|.........              ...+.+|+.+++.++||||+++++
T Consensus         8 ~ry~~~~~~ig~G~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~   87 (335)
T PTZ00024          8 ERYIQKGAHLGEGTYGKVEKAYDTLTGKIVAIKKVKIIEISNDVTKDRQLVGMCGIHFTTLRELKIMNEIKHENIMGLVD   87 (335)
T ss_pred             cchhhhhhcccCCCceeEEEEEECCCCCeEEEEEeeccccccccccchhhhcccccchhHHHHHHHHHhCCCcceeeeeE
Confidence            3454 4578999999999999965 68899999875432111              114678999999999999999999


Q ss_pred             EEEECCEEEEEEecCCC---------CCCCHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCce
Q 047066          168 CCLETEVPLLVNEFVKL---------PTISWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASK  225 (256)
Q Consensus       168 ~~~~~~~~~lv~e~~~~---------~~l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~  225 (256)
                      ++...+..+++|||+.+         ..++......++.|++             +||+|+||+++.++.+||+|||+++
T Consensus        88 ~~~~~~~~~lv~e~~~~~l~~~l~~~~~~~~~~~~~~~~ql~~aL~~LH~~~i~H~dl~~~nill~~~~~~kl~dfg~~~  167 (335)
T PTZ00024         88 VYVEGDFINLVMDIMASDLKKVVDRKIRLTESQVKCILLQILNGLNVLHKWYFMHRDLSPANIFINSKGICKIADFGLAR  167 (335)
T ss_pred             EEecCCcEEEEEeccccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeecccccHHHeEECCCCCEEECCcccee
Confidence            99999999999999975         2244444455555544             6999999999999999999999998


Q ss_pred             ecC
Q 047066          226 LVP  228 (256)
Q Consensus       226 ~~~  228 (256)
                      ...
T Consensus       168 ~~~  170 (335)
T PTZ00024        168 RYG  170 (335)
T ss_pred             ecc
Confidence            765

>cd05118 STKc_CMGC Catalytic domain of CMGC family Serine/Threonine Kinases

Probab=99.72  E-value=7.1e-17  Score=134.58  Aligned_cols=150  Identities=22%  Similarity=0.282  Sum_probs=114.2

Q ss_pred             CcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC--hhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEecC
Q 047066          106 YAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY--QSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEFV  182 (256)
Q Consensus       106 ~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~  182 (256)
                      |+..+.||+|++|.||++... +++.+++|.+....  ......+.+|+.+++.++|+|++++++++..++..++++||+
T Consensus         1 y~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~   80 (283)
T cd05118           1 YQKLGKIGEGTYGVVYKARDKLTGEIVAIKKIKLRFESEGIPKTALREIKLLKELNHPNIIKLLDVFRHKGDLYLVFEFM   80 (283)
T ss_pred             CccceeeecCCCceEEEEEcCCCCcEEEEEEeccccccchhHHHHHHHHHHHHHhcCCCcchHHHhhccCCCEEEEEecc
Confidence            456789999999999999865 68899999876543  234567889999999999999999999999999999999999


Q ss_pred             CC----------CCCCHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceeeeeee
Q 047066          183 KL----------PTISWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQ  239 (256)
Q Consensus       183 ~~----------~~l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~~~~  239 (256)
                      ++          +.+++.....++.+++             +||+|+||+++.++.+||+|||.+.....+... .....
T Consensus        81 ~~~l~~~l~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~i~H~dl~p~nili~~~~~~~l~df~~~~~~~~~~~~-~~~~~  159 (283)
T cd05118          81 DTDLYKLIKDRQRGLPESLIKSYLYQLLQGLAFCHSHGILHRDLKPENLLINTEGVLKLADFGLARSFGSPVRP-YTHYV  159 (283)
T ss_pred             CCCHHHHHHhhcccCCHHHHHHHHHHHHHHHHHHHHCCeeecCcCHHHEEECCCCcEEEeeeeeeEecCCCccc-ccCcc
Confidence            75          2445555556666655             599999999999999999999999877544311 12223


Q ss_pred             ecccc----ccccc-CCCCCCC
Q 047066          240 GTLGY----YLHTS-QGTLNKE  256 (256)
Q Consensus       240 Gt~~y----~~~~~-~~t~ksD  256 (256)
                      ++..|    .+.+. .++.++|
T Consensus       160 ~~~~~~~PE~~~~~~~~~~~~D  181 (283)
T cd05118         160 VTRWYRAPELLLGDKGYSTPVD  181 (283)
T ss_pred             CcccccCcHHHhcCCCCCchhH
Confidence            56666    22223 5666665

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They

>KOG0576 consensus Mitogen-activated protein kinase kinase kinase kinase (MAP4K), germinal center kinase family [Signal transduction mechanisms]

Probab=99.71  E-value=7.7e-19  Score=154.87  Aligned_cols=154  Identities=20%  Similarity=0.261  Sum_probs=122.6

Q ss_pred             hcCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEe
Q 047066          102 ATNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNE  180 (256)
Q Consensus       102 ~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e  180 (256)
                      +.++|++...+|.|.+|.||+++.. .++..|+|.++....++..-.+.|+.+++..+||||+.++|.+...+.+|+.||
T Consensus        13 P~ddyellqrvgsgTygdvyKaRd~~s~elaavkvVkLep~dd~~~iqqei~~~~dc~h~nivay~gsylr~dklwicME   92 (829)
T KOG0576|consen   13 PQDDYELLQRVGSGTYGDVYKARDKRSGELAAVKVVKLEPGDDFSGIQQEIGMLRDCRHPNIVAYFGSYLRRDKLWICME   92 (829)
T ss_pred             CccchhheeeecCCcccchhhhcccccCchhhheeeeccCCccccccccceeeeecCCCcChHHHHhhhhhhcCcEEEEE
Confidence            5678999999999999999999965 688999998887666677778899999999999999999999999999999999


Q ss_pred             cCCCCCC----------CHHHHHHHH-------------HHHHhccCCCcEEEcCCCcEEEEecCCceecCCCCceeeee
Q 047066          181 FVKLPTI----------SWEVRIRIA-------------AETAEDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTM  237 (256)
Q Consensus       181 ~~~~~~l----------~~~~~~~~~-------------~~i~rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~~  237 (256)
                      ||.+|+|          ++.+....+             .-++||+|-.|||+++.+.+|++|||.+..+...- .....
T Consensus        93 ycgggslQdiy~~TgplselqiayvcRetl~gl~ylhs~gk~hRdiKGanilltd~gDvklaDfgvsaqitati-~Krks  171 (829)
T KOG0576|consen   93 YCGGGSLQDIYHVTGPLSELQIAYVCRETLQGLKYLHSQGKIHRDIKGANILLTDEGDVKLADFGVSAQITATI-AKRKS  171 (829)
T ss_pred             ecCCCcccceeeecccchhHHHHHHHhhhhccchhhhcCCcccccccccceeecccCceeecccCchhhhhhhh-hhhhc
Confidence            9999776          333332222             23668999999999999999999999998764321 12234


Q ss_pred             eeecccc-------cccccCCCCCCC
Q 047066          238 VQGTLGY-------YLHTSQGTLNKE  256 (256)
Q Consensus       238 ~~Gt~~y-------~~~~~~~t~ksD  256 (256)
                      ..|||.|       .-..|-|.+++|
T Consensus       172 fiGtpywmapEvaaverkggynqlcd  197 (829)
T KOG0576|consen  172 FIGTPYWMAPEVAAVERKGGYNQLCD  197 (829)
T ss_pred             ccCCccccchhHHHHHhccccccccc
Confidence            5699988       333455555554

>KOG0607 consensus MAP kinase-interacting kinase and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.71  E-value=1.8e-17  Score=135.38  Aligned_cols=135  Identities=21%  Similarity=0.272  Sum_probs=106.6

Q ss_pred             ceeeeeCceEEEEEE-ECCCcEEEEEEecccChhHHHHHHHHHHHHHhC-CCCcccceeeEEEECCEEEEEEecCCCCCC
Q 047066          110 RMIGRGGYGTVFLGS-LSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQI-NHRNVVGLLGCCLETEVPLLVNEFVKLPTI  187 (256)
Q Consensus       110 ~~lg~G~~g~V~~~~-~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~lv~e~~~~~~l  187 (256)
                      +.||+|+++.|-.|. ..++.++|||++.......+.+..+|++++... .|+||++++++|++....|+|||-|.+|++
T Consensus        84 e~LGeGAyasVqtcv~i~t~~EYAVKiidKq~gHsR~RvfREVe~f~~Cqgh~nilqLiefFEdd~~FYLVfEKm~GGpl  163 (463)
T KOG0607|consen   84 ELLGEGAYASVQTCVSIQTGKEYAVKIIDKQPGHSRSRVFREVETFYQCQGHKNILQLIEFFEDDTRFYLVFEKMRGGPL  163 (463)
T ss_pred             HHhcCccceeeeeeeeeccchhhhhhhhhcCCchHHHHHHHHHHHHHHhcCCccHHHHHHHhcccceEEEEEecccCchH
Confidence            689999999999887 578999999999877666778899999999999 699999999999999999999999999986


Q ss_pred             C----------HHHHHHHHHHHH-------------hccCCCcEEEcCCC---cEEEEecCCceecCCC--C----ceee
Q 047066          188 S----------WEVRIRIAAETA-------------EDIKSINILLDDNY---TTKVCDFGASKLVPID--E----TQLS  235 (256)
Q Consensus       188 ~----------~~~~~~~~~~i~-------------rdlk~~NiLi~~~~---~~ki~DFGla~~~~~~--~----~~~~  235 (256)
                      -          +....++..+||             |||||+|||-.+..   -+||+||.|+..+..+  -    +...
T Consensus       164 LshI~~~~~F~E~EAs~vvkdia~aLdFlH~kgIAHRDlKPENiLC~~pn~vsPvKiCDfDLgSg~k~~~~~spastP~L  243 (463)
T KOG0607|consen  164 LSHIQKRKHFNEREASRVVKDIASALDFLHTKGIAHRDLKPENILCESPNKVSPVKICDFDLGSGIKLNNDCSPASTPEL  243 (463)
T ss_pred             HHHHHHhhhccHHHHHHHHHHHHHHHHHHhhcCcccccCCccceeecCCCCcCceeeeccccccccccCCCCCCCCCccc
Confidence            2          333334444444             79999999986544   5899999998765322  1    1112


Q ss_pred             eeeeecccc
Q 047066          236 TMVQGTLGY  244 (256)
Q Consensus       236 ~~~~Gt~~y  244 (256)
                      .+.+|+..|
T Consensus       244 ~tPvGSAEf  252 (463)
T KOG0607|consen  244 LTPVGSAEF  252 (463)
T ss_pred             cCcccchhh
Confidence            334677777

>cd05606 STKc_beta_ARK Catalytic domain of the Protein Serine/Threonine Kinase, beta-adrenergic receptor kinase

Probab=99.71  E-value=1.9e-16  Score=132.30  Aligned_cols=143  Identities=22%  Similarity=0.244  Sum_probs=103.8

Q ss_pred             eeeeeCceEEEEEEEC-CCcEEEEEEecccC---hhHHHHHHHHHH---HHHhCCCCcccceeeEEEECCEEEEEEecCC
Q 047066          111 MIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY---QSQIEQCINKVV---VLSQINHRNVVGLLGCCLETEVPLLVNEFVK  183 (256)
Q Consensus       111 ~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~---~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~  183 (256)
                      +||+|+||.||++... +++.||+|.+....   ......+..|..   .++..+|||++++.+++...+..+++|||+.
T Consensus         1 ~ig~g~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~v~e~~~   80 (278)
T cd05606           1 IIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKLSFILDLMN   80 (278)
T ss_pred             CcccCCCeEEEEEEEecCCCEEEEEEeeccccccchhHHHHHHHHHHHHHHHhCCCCcEeeeeeeeecCCEEEEEEecCC
Confidence            4799999999999864 58899999875432   111122344443   3445579999999999999999999999998


Q ss_pred             CCCC----------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceeeeeeee
Q 047066          184 LPTI----------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQG  240 (256)
Q Consensus       184 ~~~l----------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~~~~G  240 (256)
                      +++|          ++.....++.|++             +||+|+||+++.++.+||+|||++..+.....   ....|
T Consensus        81 g~~L~~~l~~~~~l~~~~~~~~~~ql~~~l~~lH~~~i~H~di~p~nili~~~~~~kl~dfg~~~~~~~~~~---~~~~~  157 (278)
T cd05606          81 GGDLHYHLSQHGVFSEAEMRFYAAEIILGLEHMHNRFVVYRDLKPANILLDEHGHVRISDLGLACDFSKKKP---HASVG  157 (278)
T ss_pred             CCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCEEcCCCCHHHEEECCCCCEEEccCcCccccCccCC---cCcCC
Confidence            8765          4455555555554             69999999999999999999999986543221   22358


Q ss_pred             cccc----ccc-ccCCCCCCC
Q 047066          241 TLGY----YLH-TSQGTLNKE  256 (256)
Q Consensus       241 t~~y----~~~-~~~~t~ksD  256 (256)
                      ++.|    .+. +..++.++|
T Consensus       158 ~~~y~aPE~~~~~~~~~~~~D  178 (278)
T cd05606         158 THGYMAPEVLQKGVAYDSSAD  178 (278)
T ss_pred             CcCCcCcHHhcCCCCCCcccc
Confidence            8888    332 335777776

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, beta-adrenergic receptor kinase (beta-ARK) group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. The beta-ARK group is co

>cd07857 STKc_MPK1 Catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1

Probab=99.71  E-value=1.5e-16  Score=136.29  Aligned_cols=152  Identities=20%  Similarity=0.305  Sum_probs=110.8

Q ss_pred             CCcccceeeeeCceEEEEEEEC-C--CcEEEEEEecccC--hhHHHHHHHHHHHHHhC-CCCcccceeeEEEEC----CE
Q 047066          105 NYAYDRMIGRGGYGTVFLGSLS-D--NKAIAIKKSRIVY--QSQIEQCINKVVVLSQI-NHRNVVGLLGCCLET----EV  174 (256)
Q Consensus       105 ~~~~~~~lg~G~~g~V~~~~~~-~--~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~----~~  174 (256)
                      +|++.+.||+|+||.||++... .  +..+|+|.+....  ....+.+.+|+.+++++ +||||+++++.+...    ..
T Consensus         1 ~y~~~~~lg~G~~g~vy~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~~~   80 (332)
T cd07857           1 RYELIKELGQGAYGIVCSARNAETSEEETVAIKKITNVFSKKILAKRALRELKLLRHFRGHKNITCLYDMDIVFPGNFNE   80 (332)
T ss_pred             CceEEEEccccCCeEEEEEEeCCCCcCceEEEEEeccccccchhHHHHHHHHHHHHHhcCCCChheeeeeeeeccccCCc
Confidence            4778889999999999999964 3  7789999876432  22346788999999999 699999999876532    45


Q ss_pred             EEEEEecCCC---------CCCCHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCc
Q 047066          175 PLLVNEFVKL---------PTISWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDET  232 (256)
Q Consensus       175 ~~lv~e~~~~---------~~l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~  232 (256)
                      .++++||+.+         ..+++.....++.|++             +||||+||+++.++.+||+|||+++.+.....
T Consensus        81 ~~~~~e~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~givH~dlkp~Nili~~~~~~kl~Dfg~a~~~~~~~~  160 (332)
T cd07857          81 LYLYEELMEADLHQIIRSGQPLTDAHFQSFIYQILCGLKYIHSANVLHRDLKPGNLLVNADCELKICDFGLARGFSENPG  160 (332)
T ss_pred             EEEEEecccCCHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHeEEcCCCCEEeCcCCCceecccccc
Confidence            7888998754         3455555566665555             69999999999999999999999987643221


Q ss_pred             e---eeeeeeecccc----cccc-cCCCCCCC
Q 047066          233 Q---LSTMVQGTLGY----YLHT-SQGTLNKE  256 (256)
Q Consensus       233 ~---~~~~~~Gt~~y----~~~~-~~~t~ksD  256 (256)
                      .   ......||+.|    ...+ ..++.++|
T Consensus       161 ~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~D  192 (332)
T cd07857         161 ENAGFMTEYVATRWYRAPEIMLSFQSYTKAID  192 (332)
T ss_pred             cccccccCcccCccccCcHHHhCCCCCCcHHH
Confidence            1   11223578888    2322 34566665

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape, cell wall co

>KOG0983 consensus Mitogen-activated protein kinase (MAPK) kinase MKK7/JNKK2 [Signal transduction mechanisms]

Probab=99.71  E-value=1.3e-17  Score=133.55  Aligned_cols=139  Identities=22%  Similarity=0.291  Sum_probs=105.3

Q ss_pred             CCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC-hhHHHHHHHHHHHHHhC-CCCcccceeeEEEECCEEEEEEe
Q 047066          104 NNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY-QSQIEQCINKVVVLSQI-NHRNVVGLLGCCLETEVPLLVNE  180 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~lv~e  180 (256)
                      +.++.+..||+|+.|.||+++.+ +|..+|||...... .++..+++..++++... +.|.||+.+|+|......++-||
T Consensus        92 ndl~~l~dlGsGtcG~V~k~~~rs~~~iiAVK~M~rt~Nkee~kRILmDldvv~~s~dcpyIV~c~GyFi~n~dV~IcMe  171 (391)
T KOG0983|consen   92 NDLENLGDLGSGTCGQVWKMRFRSTGHIIAVKQMRRTGNKEENKRILMDLDVVLKSHDCPYIVQCFGYFITNTDVFICME  171 (391)
T ss_pred             HHhhhHHhhcCCCccceEEEEEcccceEEEEEeecccCCHHHHHHHHHhhhHHhhccCCCeeeeeeeEEeeCchHHHHHH
Confidence            34556678999999999999975 68899999987654 55567788888887666 58999999999999998999898


Q ss_pred             cCCC----------CCCCHHHH----------HHHHH----HHHhccCCCcEEEcCCCcEEEEecCCceecCCCCceeee
Q 047066          181 FVKL----------PTISWEVR----------IRIAA----ETAEDIKSINILLDDNYTTKVCDFGASKLVPIDETQLST  236 (256)
Q Consensus       181 ~~~~----------~~l~~~~~----------~~~~~----~i~rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~  236 (256)
                      .|..          +..++...          +.+..    .||||+||+|||+|+.|++|++|||++-.+-+..  .++
T Consensus       172 lMs~C~ekLlkrik~piPE~ilGk~tva~v~AL~YLKeKH~viHRDvKPSNILlDe~GniKlCDFGIsGrlvdSk--Aht  249 (391)
T KOG0983|consen  172 LMSTCAEKLLKRIKGPIPERILGKMTVAIVKALYYLKEKHGVIHRDVKPSNILLDERGNIKLCDFGISGRLVDSK--AHT  249 (391)
T ss_pred             HHHHHHHHHHHHhcCCchHHhhhhhHHHHHHHHHHHHHhcceeecccCccceEEccCCCEEeecccccceeeccc--ccc
Confidence            8733          33333222          12221    2558999999999999999999999998765432  233


Q ss_pred             eeeecccc
Q 047066          237 MVQGTLGY  244 (256)
Q Consensus       237 ~~~Gt~~y  244 (256)
                      ...|.+.|
T Consensus       250 rsAGC~~Y  257 (391)
T KOG0983|consen  250 RSAGCAAY  257 (391)
T ss_pred             cccCCccc
Confidence            44588888

>KOG0695 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.71  E-value=1.4e-17  Score=136.95  Aligned_cols=157  Identities=25%  Similarity=0.306  Sum_probs=121.1

Q ss_pred             HHhhcCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecc---cChhHHHHHHHHHHHHHhC-CCCcccceeeEEEECC
Q 047066           99 LKIATNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRI---VYQSQIEQCINKVVVLSQI-NHRNVVGLLGCCLETE  173 (256)
Q Consensus        99 ~~~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~---~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~  173 (256)
                      +.....+|.++++||.|+|.+|..++++ +.+.+|+|.++.   .+.+++...+.|-.+...- +||.+|.+..+|.+..
T Consensus       245 ~~l~l~df~ll~vigrgsyakvl~~~~~~t~qiyamkvvkkel~nddedidwvqtek~vfe~asn~pflvglhscfqtes  324 (593)
T KOG0695|consen  245 QGLGLQDFDLLRVIGRGSYAKVLLVRLKKTDQIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNNPFLVGLHSCFQTES  324 (593)
T ss_pred             cccccccceeeeeecCcchhhhhheehcccceeeehhhHHHHhcCCcccchhHHhhHHHHHhccCCCeEEehhhhhcccc
Confidence            4455678999999999999999999965 677899998754   2345567778888888776 8999999999999999


Q ss_pred             EEEEEEecCCCCCC----------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCC
Q 047066          174 VPLLVNEFVKLPTI----------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPID  230 (256)
Q Consensus       174 ~~~lv~e~~~~~~l----------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~  230 (256)
                      .+++|.||+++|.|          ++.........|.             ||||..|+|+|..|++|++|+|+++.--.+
T Consensus       325 rlffvieyv~ggdlmfhmqrqrklpeeharfys~ei~lal~flh~rgiiyrdlkldnvlldaeghikltdygmcke~l~~  404 (593)
T KOG0695|consen  325 RLFFVIEYVNGGDLMFHMQRQRKLPEEHARFYSAEICLALNFLHERGIIYRDLKLDNVLLDAEGHIKLTDYGMCKEGLGP  404 (593)
T ss_pred             eEEEEEEEecCcceeeehhhhhcCcHHHhhhhhHHHHHHHHHHhhcCeeeeeccccceEEccCCceeecccchhhcCCCC
Confidence            99999999999876          3333333322222             799999999999999999999999864322


Q ss_pred             Cceeeeeeeecccc----cccccCCCCCCC
Q 047066          231 ETQLSTMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       231 ~~~~~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      ... ..+.||||.|    .+.+.+|....|
T Consensus       405 gd~-tstfcgtpnyiapeilrgeeygfsvd  433 (593)
T KOG0695|consen  405 GDT-TSTFCGTPNYIAPEILRGEEYGFSVD  433 (593)
T ss_pred             Ccc-cccccCCCcccchhhhcccccCceeh
Confidence            222 3457899999    555666655443

>cd07830 STKc_MAK_like Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases

Probab=99.69  E-value=3.2e-16  Score=130.78  Aligned_cols=149  Identities=23%  Similarity=0.301  Sum_probs=110.2

Q ss_pred             CcccceeeeeCceEEEEEEEC-CCcEEEEEEecccCh-hHHHHHHHHHHHHHhCC-CCcccceeeEEEECCEEEEEEecC
Q 047066          106 YAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVYQ-SQIEQCINKVVVLSQIN-HRNVVGLLGCCLETEVPLLVNEFV  182 (256)
Q Consensus       106 ~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~-h~niv~l~~~~~~~~~~~lv~e~~  182 (256)
                      |++.+.||+|++|.||+|... +++.+++|.+..... .......+|+..+++++ |||++++++++...+..+++|||+
T Consensus         1 y~~~~~ig~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~lv~e~~   80 (283)
T cd07830           1 YKVIKQLGDGTFGSVYLARNKETGELVAIKKMKKKFYSWEECMNLREVKSLRKLNEHPNIVKLKEVFRENDELYFVFEYM   80 (283)
T ss_pred             CeeheeeccCCceEEEEEEECCCCcEEEEEEehhhccchhHHHHHHHHHHHHhccCCCCchhHHHHhhcCCcEEEEEecC
Confidence            567789999999999999975 578899998754322 22234567999999998 999999999999999999999999


Q ss_pred             CC-----------CCCCHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceeeeee
Q 047066          183 KL-----------PTISWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMV  238 (256)
Q Consensus       183 ~~-----------~~l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~~~  238 (256)
                      .+           ..+++.....++.+++             +||+|+||++++++.++|+|||++.........  +..
T Consensus        81 ~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lh~~~i~H~dl~~~ni~i~~~~~~~l~d~~~~~~~~~~~~~--~~~  158 (283)
T cd07830          81 EGNLYQLMKDRKGKPFSESVIRSIIYQILQGLAHIHKHGFFHRDLKPENLLVSGPEVVKIADFGLAREIRSRPPY--TDY  158 (283)
T ss_pred             CCCHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHHCCcccCCCChhhEEEcCCCCEEEeecccceeccCCCCc--CCC
Confidence            43           1335555555565555             599999999999999999999999876432221  122


Q ss_pred             eecccc-----cccccCCCCCCC
Q 047066          239 QGTLGY-----YLHTSQGTLNKE  256 (256)
Q Consensus       239 ~Gt~~y-----~~~~~~~t~ksD  256 (256)
                      .|+..|     ......++.++|
T Consensus       159 ~~~~~~~aPE~~~~~~~~~~~~D  181 (283)
T cd07830         159 VSTRWYRAPEILLRSTSYSSPVD  181 (283)
T ss_pred             CCcccccCceeeecCcCcCCccc
Confidence            356555     223344566665

Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertili

>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]

Probab=99.69  E-value=1.4e-18  Score=149.27  Aligned_cols=142  Identities=20%  Similarity=0.241  Sum_probs=112.8

Q ss_pred             hhcCCCcccceeeeeCceEEEEEEECCC-cEEEEEEec---ccChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEE
Q 047066          101 IATNNYAYDRMIGRGGYGTVFLGSLSDN-KAIAIKKSR---IVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPL  176 (256)
Q Consensus       101 ~~~~~~~~~~~lg~G~~g~V~~~~~~~~-~~vavK~~~---~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~  176 (256)
                      ...++++....||-|+||.|-++..+.. ..+|+|+++   ..+..+.++...|-.+|...++|.||++|..|.++...|
T Consensus       417 v~l~dl~~iaTLGvGgFGRVELV~~~~~~~~fAlKilkK~hIVdtkQqeHv~sEr~Im~~~~s~fIvrLYrTfrd~kyvY  496 (732)
T KOG0614|consen  417 VKLSDLKRIATLGVGGFGRVELVKVNSQKATFALKILKKKHIVDTKQQEHVFSERNIMMECRSDFIVRLYRTFRDSKYVY  496 (732)
T ss_pred             cchhhhhhhhhcccCccceEEEEEecccchHHHHHHHhHhhccchhHHHHHHhHHHHHHhcCchHHHHHHHHhccchhhh
Confidence            3445677778999999999999987543 347777654   455667789999999999999999999999999999999


Q ss_pred             EEEecCCCCCC----------CHHHH-------------HHHHHHHHhccCCCcEEEcCCCcEEEEecCCceecCCCCce
Q 047066          177 LVNEFVKLPTI----------SWEVR-------------IRIAAETAEDIKSINILLDDNYTTKVCDFGASKLVPIDETQ  233 (256)
Q Consensus       177 lv~e~~~~~~l----------~~~~~-------------~~~~~~i~rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~  233 (256)
                      ++||-|-+|.+          +....             +|--..|-|||||+|.++|.+|.+||.|||+|+.+..... 
T Consensus       497 mLmEaClGGElWTiLrdRg~Fdd~tarF~~acv~EAfeYLH~k~iIYRDLKPENllLd~~Gy~KLVDFGFAKki~~g~K-  575 (732)
T KOG0614|consen  497 MLMEACLGGELWTILRDRGSFDDYTARFYVACVLEAFEYLHRKGIIYRDLKPENLLLDNRGYLKLVDFGFAKKIGSGRK-  575 (732)
T ss_pred             hhHHhhcCchhhhhhhhcCCcccchhhhhHHHHHHHHHHHHhcCceeccCChhheeeccCCceEEeehhhHHHhccCCc-
Confidence            99999988665          21111             2222233379999999999999999999999999876544 


Q ss_pred             eeeeeeecccc
Q 047066          234 LSTMVQGTLGY  244 (256)
Q Consensus       234 ~~~~~~Gt~~y  244 (256)
                       ..+.||||.|
T Consensus       576 -TwTFcGTpEY  585 (732)
T KOG0614|consen  576 -TWTFCGTPEY  585 (732)
T ss_pred             -eeeecCCccc
Confidence             4568999999

>cd07829 STKc_CDK_like Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

Probab=99.69  E-value=2.4e-16  Score=131.27  Aligned_cols=150  Identities=25%  Similarity=0.326  Sum_probs=112.7

Q ss_pred             CcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC--hhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEecC
Q 047066          106 YAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY--QSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEFV  182 (256)
Q Consensus       106 ~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~  182 (256)
                      |+..+.||+|.+|.||+|... +++.+++|......  ....+.+..|+.+++.++|+|++++++++...+..++++||+
T Consensus         1 y~~~~~ig~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~~v~e~~   80 (282)
T cd07829           1 YEKLEKLGEGTYGVVYKARDKKTGEIVALKKIRLDNEEEGIPSTALREISLLKELKHPNIVKLLDVIHTERKLYLVFEYC   80 (282)
T ss_pred             CeeehcccccCcceEEEeeecCCCcEEEEEEeccccccccccHHHHHHHHHHHhcCCCCHHHHHhhhhcCCceEEEecCc
Confidence            456678999999999999975 58899999886543  333467788999999999999999999999999999999999


Q ss_pred             CCC----------CCCHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceeeeeee
Q 047066          183 KLP----------TISWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQ  239 (256)
Q Consensus       183 ~~~----------~l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~~~~  239 (256)
                      ++.          .+++.....++.+++             +||+|+||++++++.+||+|||+++........ .....
T Consensus        81 ~~~l~~~i~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~i~H~~l~~~ni~~~~~~~~~l~d~g~~~~~~~~~~~-~~~~~  159 (282)
T cd07829          81 DMDLKKYLDKRPGPLSPNLIKSIMYQLLRGLAYCHSHRILHRDLKPQNILINRDGVLKLADFGLARAFGIPLRT-YTHEV  159 (282)
T ss_pred             CcCHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCChheEEEcCCCCEEEecCCcccccCCCccc-cCccc
Confidence            741          344555555555544             599999999999999999999999876543221 12223


Q ss_pred             ecccc----ccccc-CCCCCCC
Q 047066          240 GTLGY----YLHTS-QGTLNKE  256 (256)
Q Consensus       240 Gt~~y----~~~~~-~~t~ksD  256 (256)
                      ++..|    .+.+. .++.++|
T Consensus       160 ~~~~~~aPE~~~~~~~~~~~~D  181 (282)
T cd07829         160 VTLWYRAPEILLGSKHYSTAVD  181 (282)
T ss_pred             cCcCcCChHHhcCCcCCCcccc
Confidence            45555    22223 6666666

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the

>KOG1152 consensus Signal transduction serine/threonine kinase with PAS/PAC sensor domain [Signal transduction mechanisms]

Probab=99.69  E-value=2e-16  Score=137.89  Aligned_cols=138  Identities=24%  Similarity=0.336  Sum_probs=108.5

Q ss_pred             CCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC---hhHHH-----HHHHHHHHHHhCC---CCcccceeeEEEE
Q 047066          104 NNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY---QSQIE-----QCINKVVVLSQIN---HRNVVGLLGCCLE  171 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~-----~~~~E~~~l~~l~---h~niv~l~~~~~~  171 (256)
                      .+|...+.+|+|+||+|+.|.++ +...|++|.+....   ..+.+     ..-.|+.||..++   |+||++++++|++
T Consensus       561 s~yttlq~lG~GAyGkV~lai~K~n~~eVViK~I~KeRIL~DtWvrDrkLGtVp~EIqIla~l~~~sH~NIlKlLdfFEd  640 (772)
T KOG1152|consen  561 SDYTTLQPLGEGAYGKVNLAIHKENNYEVVIKMIFKERILVDTWVRDRKLGTVPSEIQILATLNKHSHENILKLLDFFED  640 (772)
T ss_pred             ccceeeeeccccccceEEEeeecccceEEEeeehhhhhhhhhhhhcccccCccchhHHHHHHhhhcCccchhhhhheeec
Confidence            56888999999999999999976 56788999775322   11211     2456999999997   9999999999999


Q ss_pred             CCEEEEEEecCCC-----------CCCCHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceec
Q 047066          172 TEVPLLVNEFVKL-----------PTISWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLV  227 (256)
Q Consensus       172 ~~~~~lv~e~~~~-----------~~l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~  227 (256)
                      ++..+++||-..-           ..+++....-+..||+             ||||-+|+.++.+|-+||+|||.|...
T Consensus       641 dd~yyl~te~hg~gIDLFd~IE~kp~m~E~eAk~IFkQV~agi~hlh~~~ivhrdikdenvivd~~g~~klidfgsaa~~  720 (772)
T KOG1152|consen  641 DDYYYLETEVHGEGIDLFDFIEFKPRMDEPEAKLIFKQVVAGIKHLHDQGIVHRDIKDENVIVDSNGFVKLIDFGSAAYT  720 (772)
T ss_pred             CCeeEEEecCCCCCcchhhhhhccCccchHHHHHHHHHHHhccccccccCceecccccccEEEecCCeEEEeeccchhhh
Confidence            9999999996533           3345666666666655             899999999999999999999999875


Q ss_pred             CCCCceeeeeeeecccc
Q 047066          228 PIDETQLSTMVQGTLGY  244 (256)
Q Consensus       228 ~~~~~~~~~~~~Gt~~y  244 (256)
                      ..   ......+||..|
T Consensus       721 ks---gpfd~f~gtv~~  734 (772)
T KOG1152|consen  721 KS---GPFDVFVGTVDY  734 (772)
T ss_pred             cC---CCcceeeeeccc
Confidence            42   223446799999

>KOG1027 consensus Serine/threonine protein kinase and endoribonuclease ERN1/IRE1, sensor of the unfolded protein response pathway [Signal transduction mechanisms]

Probab=99.69  E-value=3.1e-17  Score=147.96  Aligned_cols=137  Identities=23%  Similarity=0.344  Sum_probs=104.2

Q ss_pred             CCCcccceeeeeCceE-EEEEEECCCcEEEEEEecccChhHHHHHHHHHHHHHhC-CCCcccceeeEEEECCEEEEEEec
Q 047066          104 NNYAYDRMIGRGGYGT-VFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQI-NHRNVVGLLGCCLETEVPLLVNEF  181 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~-V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~lv~e~  181 (256)
                      .-|...+.+|.|+.|+ ||+|.. .+++||||.+...   ...-..+|+..|+.- +||||+++++.-.++...||..|.
T Consensus       509 ~~~~~~eilG~Gs~Gt~Vf~G~y-e~R~VAVKrll~e---~~~~A~rEi~lL~eSD~H~NviRyyc~E~d~qF~YIalEL  584 (903)
T KOG1027|consen  509 LFFSPKEILGYGSNGTVVFRGVY-EGREVAVKRLLEE---FFDFAQREIQLLQESDEHPNVIRYYCSEQDRQFLYIALEL  584 (903)
T ss_pred             eeeccHHHcccCCCCcEEEEEee-CCceehHHHHhhH---hHHHHHHHHHHHHhccCCCceEEEEeeccCCceEEEEehH
Confidence            3455668999999886 899998 7889999976543   334567899999988 799999999999999999999999


Q ss_pred             CCC-------C---------CCC-HHH---------HHHHHHHHHhccCCCcEEEcC---C--CcEEEEecCCceecCCC
Q 047066          182 VKL-------P---------TIS-WEV---------RIRIAAETAEDIKSINILLDD---N--YTTKVCDFGASKLVPID  230 (256)
Q Consensus       182 ~~~-------~---------~l~-~~~---------~~~~~~~i~rdlk~~NiLi~~---~--~~~ki~DFGla~~~~~~  230 (256)
                      |..       .         .+. +..         .+|.+..+||||||.||||+.   +  ..++|+|||+++.+..+
T Consensus       585 C~~sL~dlie~~~~d~~~~~~i~~~~~l~q~~~GlaHLHsl~iVHRDLkPQNILI~~~~~~~~~ra~iSDfglsKkl~~~  664 (903)
T KOG1027|consen  585 CACSLQDLIESSGLDVEMQSDIDPISVLSQIASGLAHLHSLKIVHRDLKPQNILISVPSADGTLRAKISDFGLSKKLAGG  664 (903)
T ss_pred             hhhhHHHHHhccccchhhcccccHHHHHHHHHHHHHHHHhcccccccCCCceEEEEccCCCcceeEEecccccccccCCC
Confidence            854       1         011 111         134444566999999999975   2  47999999999999766


Q ss_pred             Cceee--eeeeecccc
Q 047066          231 ETQLS--TMVQGTLGY  244 (256)
Q Consensus       231 ~~~~~--~~~~Gt~~y  244 (256)
                      .....  ....||-+|
T Consensus       665 ~sS~~r~s~~sGt~GW  680 (903)
T KOG1027|consen  665 KSSFSRLSGGSGTSGW  680 (903)
T ss_pred             cchhhcccCCCCcccc
Confidence            55443  345689888

>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.69  E-value=2.8e-17  Score=145.96  Aligned_cols=133  Identities=28%  Similarity=0.372  Sum_probs=108.1

Q ss_pred             eeeeeCceEEEEEEECC-CcEEEEEEecccChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEecCCCCCCCH
Q 047066          111 MIGRGGYGTVFLGSLSD-NKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEFVKLPTISW  189 (256)
Q Consensus       111 ~lg~G~~g~V~~~~~~~-~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~~~~l~~  189 (256)
                      +||+|.||+||-|+..+ ...+|||-+...+....+-+..|+.+-+.|+|.|||+++|.+...+.+-|.||-++||+|+.
T Consensus       582 VLGKGTYG~VYA~RD~~tqvrIaIKEIpekdsr~~QPLhEEIaLH~~LrHkNIVrYLGs~senGf~kIFMEqVPGGSLSs  661 (1226)
T KOG4279|consen  582 VLGKGTYGTVYAARDMDTQVRIAIKEIPEKDSREVQPLHEEIALHSTLRHKNIVRYLGSVSENGFFKIFMEQVPGGSLSS  661 (1226)
T ss_pred             EeecCceeEEEeeccccceeEEEeeecccccchhhccHHHHHHHHHHHhhHhHHHHhhccCCCCeEEEEeecCCCCcHHH
Confidence            89999999999999764 56889998877766666778999999999999999999999999999999999999999864


Q ss_pred             HHH--------------------------HHHHHHHHhccCCCcEEEcC-CCcEEEEecCCceecCCCCceeeeeeeecc
Q 047066          190 EVR--------------------------IRIAAETAEDIKSINILLDD-NYTTKVCDFGASKLVPIDETQLSTMVQGTL  242 (256)
Q Consensus       190 ~~~--------------------------~~~~~~i~rdlk~~NiLi~~-~~~~ki~DFGla~~~~~~~~~~~~~~~Gt~  242 (256)
                      ..+                          ++-...+|||||-.|+|++- .|.+||+|||-++.+.. ......+..||.
T Consensus       662 LLrskWGPlKDNEstm~fYtkQILeGLkYLHen~IVHRDIKGDNVLvNTySGvlKISDFGTsKRLAg-inP~TETFTGTL  740 (1226)
T KOG4279|consen  662 LLRSKWGPLKDNESTMNFYTKQILEGLKYLHENKIVHRDIKGDNVLVNTYSGVLKISDFGTSKRLAG-INPCTETFTGTL  740 (1226)
T ss_pred             HHHhccCCCccchhHHHHHHHHHHHHhhhhhhcceeeccccCCcEEEeeccceEEecccccchhhcc-CCccccccccch
Confidence            443                          22223456899999999974 68999999999987642 122334456888


Q ss_pred             cc
Q 047066          243 GY  244 (256)
Q Consensus       243 ~y  244 (256)
                      .|
T Consensus       741 QY  742 (1226)
T KOG4279|consen  741 QY  742 (1226)
T ss_pred             hh
Confidence            88

>cd05147 RIO1_euk RIO kinase family; eukaryotic RIO1, catalytic domain

Probab=99.69  E-value=2.1e-16  Score=124.62  Aligned_cols=118  Identities=15%  Similarity=0.093  Sum_probs=82.9

Q ss_pred             cceeeeeCceEEEEEEECCCcEEEEEEecccChh--H------------------------HHHHHHHHHHHHhCCCCcc
Q 047066          109 DRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQS--Q------------------------IEQCINKVVVLSQINHRNV  162 (256)
Q Consensus       109 ~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~--~------------------------~~~~~~E~~~l~~l~h~ni  162 (256)
                      ...||+|+||.||+|...+|+.||+|.++.....  .                        ......|+..+.++.++++
T Consensus         2 ~~~ig~G~~~~Vy~a~~~~g~~vAvKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~v   81 (190)
T cd05147           2 NGCISTGKEANVYHATTANGEERAIKIYKTSILVFKDRDRYVSGEFRFRHGYCKSNPRKMVRTWAEKEMRNLKRLVTAGI   81 (190)
T ss_pred             CCccccccceEEEEEECCCCCEEEEEEEEecccccccHHHhhcCCchhhccccCCCHHHHHHHHHHHHHHHHHHHHHCCC
Confidence            3689999999999999878999999988643211  0                        0122459999999988877


Q ss_pred             cceeeEEEECCEEEEEEecCCCCCC----------CHHHHHHHHHH--------------HHhccCCCcEEEcCCCcEEE
Q 047066          163 VGLLGCCLETEVPLLVNEFVKLPTI----------SWEVRIRIAAE--------------TAEDIKSINILLDDNYTTKV  218 (256)
Q Consensus       163 v~l~~~~~~~~~~~lv~e~~~~~~l----------~~~~~~~~~~~--------------i~rdlk~~NiLi~~~~~~ki  218 (256)
                      .....+...  ..++||||++++.+          +......++.+              +|+||||+|||++ ++.++|
T Consensus        82 ~~p~~~~~~--~~~iVmE~i~g~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~l~H~~giiHrDlkP~NIli~-~~~v~L  158 (190)
T cd05147          82 PCPEPILLK--SHVLVMEFIGDDGWAAPRLKDAPLSESKARELYLQVIQIMRILYQDCRLVHADLSEYNLLYH-DGKLYI  158 (190)
T ss_pred             CCCcEEEec--CCEEEEEEeCCCCCcchhhhcCCCCHHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEEEE-CCcEEE
Confidence            544433222  23899999987544          22222333322              3379999999998 478999


Q ss_pred             EecCCceecCC
Q 047066          219 CDFGASKLVPI  229 (256)
Q Consensus       219 ~DFGla~~~~~  229 (256)
                      +|||+|.....
T Consensus       159 iDFG~a~~~~~  169 (190)
T cd05147         159 IDVSQSVEHDH  169 (190)
T ss_pred             EEccccccCCC
Confidence            99999986543

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. This subfamily is composed of RIO1 proteins from eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle progression and c

>cd07851 STKc_p38 Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase

Probab=99.69  E-value=1.8e-16  Score=136.42  Aligned_cols=150  Identities=21%  Similarity=0.275  Sum_probs=112.4

Q ss_pred             cCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEeccc--ChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCE-----
Q 047066          103 TNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIV--YQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEV-----  174 (256)
Q Consensus       103 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~-----  174 (256)
                      .++|+..+.||+|++|.||+|... ++..+|+|.+...  .......+.+|+.+++.++|||++++.+++...+.     
T Consensus        14 ~~~y~~~~~ig~g~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~   93 (343)
T cd07851          14 PDRYQNLSPVGSGAYGQVCSAFDTKTGRKVAIKKLSRPFQSAIHAKRTYRELRLLKHMDHENVIGLLDVFTPASSLEDFQ   93 (343)
T ss_pred             cCceEEEEEeccCCceEEEEEEECCCCcEEEEEecccccchhhHHHHHHHHHHHHHhccCCCHHHHHHHhhccccccccc
Confidence            467999999999999999999975 5789999987543  23344667889999999999999999998776554     


Q ss_pred             -EEEEEecCCC--------CCCCHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCc
Q 047066          175 -PLLVNEFVKL--------PTISWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDET  232 (256)
Q Consensus       175 -~~lv~e~~~~--------~~l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~  232 (256)
                       .++++||+.+        +.+++.....++.+++             +||+|+||++++++.+||+|||++......  
T Consensus        94 ~~~lv~e~~~~~L~~~~~~~~l~~~~~~~~~~ql~~aL~~LH~~gi~H~dlkp~Nill~~~~~~kL~dfg~~~~~~~~--  171 (343)
T cd07851          94 DVYLVTHLMGADLNNIVKCQKLSDDHIQFLVYQILRGLKYIHSAGIIHRDLKPSNIAVNEDCELKILDFGLARHTDDE--  171 (343)
T ss_pred             cEEEEEecCCCCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeEECCCCCEEEcccccccccccc--
Confidence             8999999854        2345555555555544             699999999999999999999999876433  


Q ss_pred             eeeeeeeecccc----cc-cccCCCCCCC
Q 047066          233 QLSTMVQGTLGY----YL-HTSQGTLNKE  256 (256)
Q Consensus       233 ~~~~~~~Gt~~y----~~-~~~~~t~ksD  256 (256)
                        .....+|+.|    .+ ....++.++|
T Consensus       172 --~~~~~~~~~y~aPE~~~~~~~~~~~~D  198 (343)
T cd07851         172 --MTGYVATRWYRAPEIMLNWMHYNQTVD  198 (343)
T ss_pred             --ccCCcccccccCHHHHhCCCCCCchHh
Confidence              1223467667    22 1234556665

Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK

>cd05145 RIO1_like RIO kinase family; RIO1, RIO3 and similar proteins, catalytic domain

Probab=99.68  E-value=7.8e-16  Score=121.57  Aligned_cols=119  Identities=17%  Similarity=0.131  Sum_probs=86.7

Q ss_pred             cceeeeeCceEEEEEEECCCcEEEEEEecccChh--------------------------HHHHHHHHHHHHHhCCCCcc
Q 047066          109 DRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQS--------------------------QIEQCINKVVVLSQINHRNV  162 (256)
Q Consensus       109 ~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~--------------------------~~~~~~~E~~~l~~l~h~ni  162 (256)
                      .+.||+|++|.||+|...+|+.||+|..+.....                          ....+..|...+.++.|+++
T Consensus         2 ~~~ig~G~~~~Vy~a~~~~g~~vavKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i   81 (190)
T cd05145           2 NGCISTGKEANVYHARTGDGEELAVKIYKTSTLSFKDRDKYIEGDPRFRSRYSKSNPRKLVFAWAEKEFRNLKRLYEAGV   81 (190)
T ss_pred             CceeecCCCcEEEEEEcCCCCEEEEEEEEcCcceEeeHHHHhcCCcccccccccCCHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            4689999999999999778999999987643210                          01234678999999999988


Q ss_pred             cceeeEEEECCEEEEEEecCCCCCCC----------HHHHHHHHHH--------------HHhccCCCcEEEcCCCcEEE
Q 047066          163 VGLLGCCLETEVPLLVNEFVKLPTIS----------WEVRIRIAAE--------------TAEDIKSINILLDDNYTTKV  218 (256)
Q Consensus       163 v~l~~~~~~~~~~~lv~e~~~~~~l~----------~~~~~~~~~~--------------i~rdlk~~NiLi~~~~~~ki  218 (256)
                      .....+....  .++||||++++++.          ......++.+              +|+||||+|||++ ++.++|
T Consensus        82 ~~p~~~~~~~--~~lVmE~~~g~~~~~~~l~~~~~~~~~~~~i~~~l~~~l~~lH~~~givHrDlkP~NIll~-~~~~~l  158 (190)
T cd05145          82 PVPEPILLKK--NVLVMEFIGDDGSPAPRLKDVPLEEEEAEELYEQVVEQMRRLYQEAGLVHGDLSEYNILYH-DGKPYI  158 (190)
T ss_pred             CCceEEEecC--CEEEEEEecCCCchhhhhhhccCCHHHHHHHHHHHHHHHHHHHHhCCEecCCCChhhEEEE-CCCEEE
Confidence            6554444332  48999999887432          1222333333              3479999999999 889999


Q ss_pred             EecCCceecCCC
Q 047066          219 CDFGASKLVPID  230 (256)
Q Consensus       219 ~DFGla~~~~~~  230 (256)
                      +|||+|..+..+
T Consensus       159 iDFG~a~~~~~~  170 (190)
T cd05145         159 IDVSQAVELDHP  170 (190)
T ss_pred             EEcccceecCCC
Confidence            999999987543

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. In addition, RIO3 is present in multicellular eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle pro

>cd08222 STKc_Nek11 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 11

Probab=99.68  E-value=2.3e-16  Score=130.10  Aligned_cols=150  Identities=21%  Similarity=0.296  Sum_probs=107.3

Q ss_pred             CCcccceeeeeCceEEEEEEECC-CcEEEEEEecc-----cChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEE
Q 047066          105 NYAYDRMIGRGGYGTVFLGSLSD-NKAIAIKKSRI-----VYQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLV  178 (256)
Q Consensus       105 ~~~~~~~lg~G~~g~V~~~~~~~-~~~vavK~~~~-----~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv  178 (256)
                      +|.+.+.||+|+||.||++.... +..+++|..+.     .......++..|+.+++.++|||++++++++.+.+..+++
T Consensus         1 ~y~i~~~ig~g~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv   80 (260)
T cd08222           1 RYILQQRLGKGSFGTVYLVKDKKAVAEERLKVLKEIPVGELNPNETVQANQEAQLLSKLDHPAIVKFHASFLERDAFCII   80 (260)
T ss_pred             CceeeeeecCCCCceEEEEEecCCCCcceEEEeccccccccCcchHHHHHHHHHHHHhCCCCcHHHHHHHHhcCCceEEE
Confidence            47788999999999999998643 34455554432     1223334577899999999999999999999998999999


Q ss_pred             EecCCCCCCC--------------HHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCC
Q 047066          179 NEFVKLPTIS--------------WEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDE  231 (256)
Q Consensus       179 ~e~~~~~~l~--------------~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~  231 (256)
                      +||+++++|.              +.....++.+++             +||+|+||++++ +.+||+|||+++....+.
T Consensus        81 ~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~i~h~~l~~~nili~~-~~~~l~d~g~~~~~~~~~  159 (260)
T cd08222          81 TEYCEGRDLDCKLEELKHTGKTLSENQVCEWFIQLLLGVHYMHQRRILHRDLKAKNIFLKN-NLLKIGDFGVSRLLMGSC  159 (260)
T ss_pred             EEeCCCCCHHHHHHHHhhcccccCHHHHHHHHHHHHHHHHHHHHcCccccCCChhheEeec-CCEeecccCceeecCCCc
Confidence            9999887653              333344444444             599999999975 469999999998764432


Q ss_pred             ceeeeeeeecccc----cccccCCCCCCC
Q 047066          232 TQLSTMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       232 ~~~~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      .. .....|++.|    ...+..++.++|
T Consensus       160 ~~-~~~~~~~~~~~~pe~~~~~~~~~~~D  187 (260)
T cd08222         160 DL-ATTFTGTPYYMSPEALKHQGYDSKSD  187 (260)
T ss_pred             cc-ccCCCCCcCccCHHHHccCCCCchhh
Confidence            22 2223477777    344455566665

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 11 (Nek11) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek11 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek11 is involved, through direct phosphorylation, in regulating the degradation of Cdc25A (Cell Division Cycle 25 homolog A), which plays a role in cell cycle progression and in activating cyclin dependent kinases. Nek11 is activated by CHK1 (CHeckpoint Kinase 1) and may be involved in the G2/M check

>PHA03390 pk1 serine/threonine-protein kinase 1; Provisional

Probab=99.68  E-value=8.6e-16  Score=127.59  Aligned_cols=143  Identities=19%  Similarity=0.240  Sum_probs=105.0

Q ss_pred             CCCccccee--eeeCceEEEEEEEC-CCcEEEEEEecccChhHHHHHHHHHHHHHhC-CCCcccceeeEEEECCEEEEEE
Q 047066          104 NNYAYDRMI--GRGGYGTVFLGSLS-DNKAIAIKKSRIVYQSQIEQCINKVVVLSQI-NHRNVVGLLGCCLETEVPLLVN  179 (256)
Q Consensus       104 ~~~~~~~~l--g~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~lv~  179 (256)
                      +.|++.+.+  |+|+||.||++..+ ++..+++|.........     .|......+ +|||++++++.+...+..+++|
T Consensus        14 ~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~k~~~~~~~~~-----~e~~~~~~~~~h~~iv~~~~~~~~~~~~~iv~   88 (267)
T PHA03390         14 KNCEIVKKLKLIDGKFGKVSVLKHKPTQKLFVQKIIKAKNFNA-----IEPMVHQLMKDNPNFIKLYYSVTTLKGHVLIM   88 (267)
T ss_pred             HhhccccceeecCCCceEEEEEEEcCCCcEEEEEEEehhhcch-----hhHHHHHHhhcCCCEEEEEEEEecCCeeEEEE
Confidence            455655555  99999999999865 67889999875432111     122222223 7999999999999999999999


Q ss_pred             ecCCCCCC----------CHHHHHHHHHHHH-------------hccCCCcEEEcCCC-cEEEEecCCceecCCCCceee
Q 047066          180 EFVKLPTI----------SWEVRIRIAAETA-------------EDIKSINILLDDNY-TTKVCDFGASKLVPIDETQLS  235 (256)
Q Consensus       180 e~~~~~~l----------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~-~~ki~DFGla~~~~~~~~~~~  235 (256)
                      ||+++++|          ++.....++.|++             +||+|+||+++.++ .++|+|||+++......    
T Consensus        89 e~~~~~~L~~~l~~~~~l~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~nil~~~~~~~~~l~dfg~~~~~~~~~----  164 (267)
T PHA03390         89 DYIKDGDLFDLLKKEGKLSEAEVKKIIRQLVEALNDLHKHNIIHNDIKLENVLYDRAKDRIYLCDYGLCKIIGTPS----  164 (267)
T ss_pred             EcCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeeeCCCCHHHEEEeCCCCeEEEecCccceecCCCc----
Confidence            99987554          5555666666665             59999999999998 99999999998764332    


Q ss_pred             eeeeecccc----cccccCCCCCCC
Q 047066          236 TMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       236 ~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                       ...|++.|    .+.+..++.++|
T Consensus       165 -~~~~~~~y~aPE~~~~~~~~~~~D  188 (267)
T PHA03390        165 -CYDGTLDYFSPEKIKGHNYDVSFD  188 (267)
T ss_pred             -cCCCCCcccChhhhcCCCCCchhh
Confidence             12467777    455566777776

>KOG4645 consensus MAPKKK (MAP kinase kinase kinase) SSK2 and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.67  E-value=1.3e-17  Score=156.21  Aligned_cols=138  Identities=24%  Similarity=0.321  Sum_probs=109.7

Q ss_pred             cccceeeeeCceEEEEEEE-CCCcEEEEEEeccc--ChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEecCC
Q 047066          107 AYDRMIGRGGYGTVFLGSL-SDNKAIAIKKSRIV--YQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEFVK  183 (256)
Q Consensus       107 ~~~~~lg~G~~g~V~~~~~-~~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~  183 (256)
                      .....+|.|.||+||.|.. .+|.-.|+|-++..  .........+|..++..++|||+|+++|+-.+++..+|.||||+
T Consensus      1238 qrg~~Ig~G~fG~VYtavN~~tGellAvKEI~iq~~~~k~~~~i~eEm~vlE~lnHpNlV~YyGVEvHRekv~IFMEyC~ 1317 (1509)
T KOG4645|consen 1238 QRGNFIGGGTFGKVYTAVNLDTGELLAVKEIKIQDSDHKTFKLIAEEMKVLEGLNHPNLVRYYGVEVHREKVYIFMEYCE 1317 (1509)
T ss_pred             ccccccCCcceeeeEEeecCCccchhhhhhhhcCccccccCcchHHHHHHHHhccCccccccCceeecHHHHHHHHHHhc
Confidence            3446899999999999985 46888899966443  23334667889999999999999999999999999999999999


Q ss_pred             CCCCCHHHHH-----------------------HHHHHHHhccCCCcEEEcCCCcEEEEecCCceecCCCCcee---eee
Q 047066          184 LPTISWEVRI-----------------------RIAAETAEDIKSINILLDDNYTTKVCDFGASKLVPIDETQL---STM  237 (256)
Q Consensus       184 ~~~l~~~~~~-----------------------~~~~~i~rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~---~~~  237 (256)
                      +|+|......                       +--..+|||+||.||+++.+|.+|++|||.|..+..+....   ...
T Consensus      1318 ~GsLa~ll~~gri~dE~vt~vyt~qll~gla~LH~~gIVHRDIK~aNI~Ld~~g~iK~~DFGsa~ki~~~~~~~~~el~~ 1397 (1509)
T KOG4645|consen 1318 GGSLASLLEHGRIEDEMVTRVYTKQLLEGLAYLHEHGIVHRDIKPANILLDFNGLIKYGDFGSAVKIKNNAQTMPGELQS 1397 (1509)
T ss_pred             cCcHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHhcCceecCCCccceeeecCCcEEeecccceeEecCchhcCCHHHHh
Confidence            9998543332                       22223458999999999999999999999999887653222   134


Q ss_pred             eeecccc
Q 047066          238 VQGTLGY  244 (256)
Q Consensus       238 ~~Gt~~y  244 (256)
                      ..|||.|
T Consensus      1398 ~~GT~~Y 1404 (1509)
T KOG4645|consen 1398 MMGTPMY 1404 (1509)
T ss_pred             hcCCchh
Confidence            5799999

>cd05123 STKc_AGC Catalytic domain of AGC family Protein Serine/Threonine Kinases

Probab=99.67  E-value=1.2e-15  Score=124.98  Aligned_cols=144  Identities=28%  Similarity=0.317  Sum_probs=108.6

Q ss_pred             eeeeCceEEEEEEEC-CCcEEEEEEecccC---hhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEecCCCCCC
Q 047066          112 IGRGGYGTVFLGSLS-DNKAIAIKKSRIVY---QSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEFVKLPTI  187 (256)
Q Consensus       112 lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~~~~l  187 (256)
                      ||.|+||.||++... ++..+++|.+....   ......+..|+.+++.++|||++++++.+...+..+++|||+++++|
T Consensus         1 lg~G~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~~~~~L   80 (250)
T cd05123           1 LGKGSFGKVLLVRKKDTGKLYAMKVLKKKKIIKRKEVEHTLTERNILSRINHPFIVKLHYAFQTEEKLYLVLEYAPGGEL   80 (250)
T ss_pred             CCCCCceEEEEEEECCCCcEEEEEEeehhhhcchHHHHHHHHHHHHHHHcCCCcHHHHHHHeecCCeeEEEEecCCCCcH
Confidence            689999999999975 58899999875432   23456788999999999999999999999999999999999976544


Q ss_pred             ----------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceeeeeeeecccc
Q 047066          188 ----------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTLGY  244 (256)
Q Consensus       188 ----------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~~~~Gt~~y  244 (256)
                                ++.....++.+++             +||+|+||+++.++.++|+|||++........ ......|+..|
T Consensus        81 ~~~l~~~~~l~~~~~~~~~~qi~~~l~~lh~~~~~H~~l~p~ni~~~~~~~~~l~d~~~~~~~~~~~~-~~~~~~~~~~~  159 (250)
T cd05123          81 FSHLSKEGRFSEERARFYAAEIVLALEYLHSLGIIYRDLKPENILLDADGHIKLTDFGLAKELSSEGS-RTNTFCGTPEY  159 (250)
T ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCceecCCCcceEEEcCCCcEEEeecCcceecccCCC-cccCCcCCccc
Confidence                      4455555555544             59999999999999999999999987644321 12223466666


Q ss_pred             ----cccccCCCCCCC
Q 047066          245 ----YLHTSQGTLNKE  256 (256)
Q Consensus       245 ----~~~~~~~t~ksD  256 (256)
                          ...+...+.++|
T Consensus       160 ~~Pe~~~~~~~~~~~D  175 (250)
T cd05123         160 LAPEVLLGKGYGKAVD  175 (250)
T ss_pred             cChHHhCCCCCCchhh
Confidence                333444555555

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the

>KOG0604 consensus MAP kinase-activated protein kinase 2 [Signal transduction mechanisms]

Probab=99.67  E-value=4.2e-17  Score=132.08  Aligned_cols=135  Identities=20%  Similarity=0.191  Sum_probs=101.5

Q ss_pred             cCCCccc-ceeeeeCceEEEEEEEC-CCcEEEEEEecccChhHHHHHHHHHHHHHhC-CCCcccceeeEEEE----CCEE
Q 047066          103 TNNYAYD-RMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVYQSQIEQCINKVVVLSQI-NHRNVVGLLGCCLE----TEVP  175 (256)
Q Consensus       103 ~~~~~~~-~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~----~~~~  175 (256)
                      +++|.+. ++||-|-.|+|..|..+ +++.+|+|.+...     +...+|+++--.. .|||||++++++..    ...+
T Consensus        60 tedY~is~qvLG~GinGkV~~C~~k~T~ekfALKvL~Ds-----~KARrEVeLHw~~s~h~~iV~IidVyeNs~~~rkcL  134 (400)
T KOG0604|consen   60 TEDYSISWQVLGAGINGKVVQCVHKRTQEKFALKVLLDS-----PKARREVELHWMASGHPHIVSIIDVYENSYQGRKCL  134 (400)
T ss_pred             hhhheehhhhhccccCCceEEEEeccchhhhHHHHHhcC-----HHHHhHhhhhhhhcCCCceEEeehhhhhhccCceee
Confidence            3556654 59999999999999865 6889999987633     4456889886666 79999999998764    4568


Q ss_pred             EEEEecCCCCCC------------CHHHHHHHHHHHH-------------hccCCCcEEEc---CCCcEEEEecCCceec
Q 047066          176 LLVNEFVKLPTI------------SWEVRIRIAAETA-------------EDIKSINILLD---DNYTTKVCDFGASKLV  227 (256)
Q Consensus       176 ~lv~e~~~~~~l------------~~~~~~~~~~~i~-------------rdlk~~NiLi~---~~~~~ki~DFGla~~~  227 (256)
                      .+|||.|+||.|            ++...-.+..+|+             |||||+|+|..   .|..+||+|||+|+.-
T Consensus       135 LiVmE~meGGeLfsriq~~g~~afTErea~eI~~qI~~Av~~lH~~nIAHRDlKpENLLyt~t~~na~lKLtDfGFAK~t  214 (400)
T KOG0604|consen  135 LIVMECMEGGELFSRIQDRGDQAFTEREASEIMKQIGLAVRYLHSMNIAHRDLKPENLLYTTTSPNAPLKLTDFGFAKET  214 (400)
T ss_pred             EeeeecccchHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhcchhhccCChhheeeecCCCCcceEeccccccccc
Confidence            899999999776            3344444444443             89999999995   4558999999999975


Q ss_pred             CCCCceeeeeeeecccc
Q 047066          228 PIDETQLSTMVQGTLGY  244 (256)
Q Consensus       228 ~~~~~~~~~~~~Gt~~y  244 (256)
                      ..  .....+.|-||.|
T Consensus       215 ~~--~~~L~TPc~TPyY  229 (400)
T KOG0604|consen  215 QE--PGDLMTPCFTPYY  229 (400)
T ss_pred             CC--CccccCCcccccc
Confidence            42  2223456788888

>KOG0664 consensus Nemo-like MAPK-related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.67  E-value=2e-18  Score=138.27  Aligned_cols=151  Identities=25%  Similarity=0.309  Sum_probs=113.2

Q ss_pred             CcccceeeeeCceEEEEEEE-CCCcEEEEEEecccChh--HHHHHHHHHHHHHhCCCCcccceeeEEEECC-----EEEE
Q 047066          106 YAYDRMIGRGGYGTVFLGSL-SDNKAIAIKKSRIVYQS--QIEQCINKVVVLSQINHRNVVGLLGCCLETE-----VPLL  177 (256)
Q Consensus       106 ~~~~~~lg~G~~g~V~~~~~-~~~~~vavK~~~~~~~~--~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~-----~~~l  177 (256)
                      .+..+.||-|+||.||.+.+ ++|+.|++|++....+.  ....+.+|..+|..++|.|++..++......     ++|+
T Consensus        55 i~PDRPIGYGAFGVVWsVTDPRdgrrvalkK~pnvfq~L~s~krvFre~kmLcfFkHdNVLSaLDILQPph~dfFqEiYV  134 (449)
T KOG0664|consen   55 IQPDRPIGYGAFGVVWSVTDPRSGKRVALKKMPNVFQNLASCKRVFREIKMLSSFRHDNVLSLLDILQPANPSFFQELYV  134 (449)
T ss_pred             CCCCCcccccceeEEEeccCCCCccchhHhhcchHHHHHHHHHHHHHHHHHHHhhccccHHHHHHhcCCCCchHHHHHHH
Confidence            44557899999999998885 47999999988654332  3467899999999999999999998876443     3567


Q ss_pred             EEecCCC---------CCC-------------CHHHHHHHHHHHHhccCCCcEEEcCCCcEEEEecCCceecCCCCceee
Q 047066          178 VNEFVKL---------PTI-------------SWEVRIRIAAETAEDIKSINILLDDNYTTKVCDFGASKLVPIDETQLS  235 (256)
Q Consensus       178 v~e~~~~---------~~l-------------~~~~~~~~~~~i~rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~  235 (256)
                      ++|.|+.         ..|             .-...++-+..++|||||.|.|++.|...||+|||+|+..+.++..-+
T Consensus       135 ~TELmQSDLHKIIVSPQ~Ls~DHvKVFlYQILRGLKYLHsA~ILHRDIKPGNLLVNSNCvLKICDFGLARvee~d~~~hM  214 (449)
T KOG0664|consen  135 LTELMQSDLHKIIVSPQALTPDHVKVFVYQILRGLKYLHTANILHRDIKPGNLLVNSNCILKICDFGLARTWDQRDRLNM  214 (449)
T ss_pred             HHHHHHhhhhheeccCCCCCcchhhhhHHHHHhhhHHHhhcchhhccCCCccEEeccCceEEecccccccccchhhhhhh
Confidence            7777744         222             223345666778899999999999999999999999998876665555


Q ss_pred             eeeeecccc-----cccccCCCCCCC
Q 047066          236 TMVQGTLGY-----YLHTSQGTLNKE  256 (256)
Q Consensus       236 ~~~~Gt~~y-----~~~~~~~t~ksD  256 (256)
                      +..+-|..|     .+...+|+.+.|
T Consensus       215 TqEVVTQYYRAPEiLMGaRhYs~AvD  240 (449)
T KOG0664|consen  215 THEVVTQYYRAPELLMGARRYTGAVD  240 (449)
T ss_pred             HHHHHHHHhccHHHhhcchhhcCccc
Confidence            555566666     444555665554

>smart00221 STYKc Protein kinase; unclassified specificity

Probab=99.66  E-value=4.7e-15  Score=119.06  Aligned_cols=151  Identities=26%  Similarity=0.350  Sum_probs=114.2

Q ss_pred             CcccceeeeeCceEEEEEEECC-CcEEEEEEecccChh-HHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEecCC
Q 047066          106 YAYDRMIGRGGYGTVFLGSLSD-NKAIAIKKSRIVYQS-QIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEFVK  183 (256)
Q Consensus       106 ~~~~~~lg~G~~g~V~~~~~~~-~~~vavK~~~~~~~~-~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~  183 (256)
                      |.+.+.||+|++|.||++...+ ++.+++|........ ..+.+.+|++.++.++|+|++++++++...+..++++|++.
T Consensus         1 ~~~~~~i~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~~~~~~v~e~~~   80 (225)
T smart00221        1 YELGKKLGEGAFGKVYLARDKGTGELVAVKVLKKEKTEKQREEFLREIRILKKLKHPNIVKLYGVFEDPEPLYLVMEYCE   80 (225)
T ss_pred             CceeeEeecCCCeEEEEEEEcCCCcEEEEEeeccccchHHHHHHHHHHHHHHhCCCCChhhheeeeecCCceEEEEeccC
Confidence            4566889999999999999764 889999988765544 56788999999999999999999999999899999999998


Q ss_pred             CCCC-----------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceeeeeee
Q 047066          184 LPTI-----------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQ  239 (256)
Q Consensus       184 ~~~l-----------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~~~~  239 (256)
                      +++|           ++.....++.+++             +|++|.||+++.++.++|+|||++.....+.........
T Consensus        81 ~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~i~h~di~~~ni~v~~~~~~~l~d~g~~~~~~~~~~~~~~~~~  160 (225)
T smart00221       81 GGDLFDYLRKKGGKLSEEEARFYLRQILEALEYLHSLGIVHRDLKPENILLGMDGLVKLADFGLARFIHRDLAALLKTVK  160 (225)
T ss_pred             CCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCCEEEeeCceeeEecCccccccccee
Confidence            8554           3333333444433             599999999999999999999999887554311122334


Q ss_pred             ecccc----cc-cccCCCCCCC
Q 047066          240 GTLGY----YL-HTSQGTLNKE  256 (256)
Q Consensus       240 Gt~~y----~~-~~~~~t~ksD  256 (256)
                      ++..|    .. ....++.++|
T Consensus       161 ~~~~~~~pe~~~~~~~~~~~~D  182 (225)
T smart00221      161 GTPFYLAPEVLLGGKGYGEAVD  182 (225)
T ss_pred             ccCCcCCHhHhcCCCCCCchhh
Confidence            66666    22 3445555555

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase.

>cd08216 PK_STRAD Pseudokinase domain of STE20-related kinase adapter protein

Probab=99.65  E-value=1.6e-15  Score=128.66  Aligned_cols=120  Identities=12%  Similarity=0.094  Sum_probs=92.5

Q ss_pred             ccceeeeeCceEEEEEEECCCcEEEEEEeccc--ChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEecCCCC
Q 047066          108 YDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIV--YQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEFVKLP  185 (256)
Q Consensus       108 ~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~~~  185 (256)
                      +.+.+|.|+++.|+++.. +++.+|+|.+...  .......+.+|+.+++.++||||+++++++...+..+++|||++++
T Consensus         6 i~~~~~~~~~v~~~~~~~-~~~~~avK~~~~~~~~~~~~~~~~~Ei~~l~~l~h~~i~~~~~~~~~~~~~~~~~e~~~~~   84 (314)
T cd08216           6 IGKCFEDLMIVHLAKHKP-TNTLVAVKKINLDSCSKEDLKLLQQEIITSRQLQHPNILPYVTSFIVDSELYVVSPLMAYG   84 (314)
T ss_pred             hhHhhcCCceEEEEEecC-CCCEEEEEEEeccccchhHHHHHHHHHHHHHhcCCcchhhhhheeecCCeEEEEEeccCCC
Confidence            334444454444444444 6889999988654  3455678999999999999999999999999999999999999887


Q ss_pred             CCC------------HHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecC
Q 047066          186 TIS------------WEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVP  228 (256)
Q Consensus       186 ~l~------------~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~  228 (256)
                      ++.            ......++.+++             +||||+||+++.++.+||+|||.+..+.
T Consensus        85 ~l~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~LH~~~ivH~dlk~~Nili~~~~~~kl~d~~~~~~~~  152 (314)
T cd08216          85 SCEDLLKTHFPEGLPELAIAFILKDVLNALDYIHSKGFIHRSVKASHILLSGDGKVVLSGLRYSVSMI  152 (314)
T ss_pred             CHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCcceEEEecCCceEEecCccceeec
Confidence            653            333344444443             6999999999999999999999987653

Protein Kinase family, STE20-related kinase adapter protein (STRAD) subfamily, pseudokinase domain. The STRAD subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpigmentation of the buc

>cd08226 PK_STRAD_beta Pseudokinase domain of STE20-related kinase adapter protein beta

Probab=99.64  E-value=2.6e-15  Score=128.34  Aligned_cols=117  Identities=15%  Similarity=0.205  Sum_probs=93.4

Q ss_pred             ceeeee--CceEEEEEEEC-CCcEEEEEEecccC--hhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEecCCC
Q 047066          110 RMIGRG--GYGTVFLGSLS-DNKAIAIKKSRIVY--QSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEFVKL  184 (256)
Q Consensus       110 ~~lg~G--~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~~  184 (256)
                      ..||+|  +||+||++... +++.||+|......  ....+.+.+|+.+++.++||||+++++++...+..++++||+.+
T Consensus         4 ~~ig~g~~~~~~v~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~~~~l~h~niv~~~~~~~~~~~~~~v~e~~~~   83 (328)
T cd08226           4 VEIGRGFCNLTSVYLARHTPTGTLVTVRITDLENCTEEHLKALQNEVVLSHFFRHPNIMTSWTVFTTGSWLWVISPFMAY   83 (328)
T ss_pred             HHhCCcccCceeEEEEEEcCCCcEEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCcceEeeeEecCCceEEEEecccC
Confidence            356666  89999999975 78999999876432  33456788999999999999999999999999999999999988


Q ss_pred             CCCC------------HHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCcee
Q 047066          185 PTIS------------WEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKL  226 (256)
Q Consensus       185 ~~l~------------~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~  226 (256)
                      +++.            +.....++.|++             |||||+|||++.++.+|++||+.+..
T Consensus        84 ~~l~~~l~~~~~~~~~~~~~~~~~~qi~~aL~~lH~~~ivHrDlkp~Nill~~~~~~~~~~~~~~~~  150 (328)
T cd08226          84 GSANSLLKTYFPEGMSEALIGNILFGALRGLNYLHQNGYIHRNIKASHILISGDGLVSLSGLSHLYS  150 (328)
T ss_pred             CCHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEeCCCcEEEechHHHhh
Confidence            6653            222234444443             79999999999999999999986543

Protein Kinase family, STE20-related kinase adapter protein (STRAD) beta subfamily, pseudokinase domain. The STRAD-beta subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpig

>PRK10359 lipopolysaccharide core biosynthesis protein; Provisional

Probab=99.61  E-value=3.3e-15  Score=119.97  Aligned_cols=126  Identities=11%  Similarity=0.071  Sum_probs=96.3

Q ss_pred             HhhcCCCcccceeeeeCceEEEEEEECCCcEEEEEEecccChh---HHHH------HHHHHHHHHhCCCCcccceeeEEE
Q 047066          100 KIATNNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQS---QIEQ------CINKVVVLSQINHRNVVGLLGCCL  170 (256)
Q Consensus       100 ~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~---~~~~------~~~E~~~l~~l~h~niv~l~~~~~  170 (256)
                      .+...+|...+++|.|+||.||.... ++..+++|..++....   ..+.      +.+|+..+.+++||+|..+..++.
T Consensus        27 ~~l~~~y~~~~~l~~~~f~~v~l~~~-~~~~~iiKvf~~~~~~~~~~~~~f~~g~~~e~Ea~~l~rL~~~GI~~~~d~~~  105 (232)
T PRK10359         27 DFLSYNIKTIKVFRNIDDTKVSLIDT-DYGKYILKVFAPKVKRTERFLKSFVKGDYYENLIVQTDRVRSEGLASLNDFYL  105 (232)
T ss_pred             HHhhCceEEEEEecCCCceEEEEEec-CCCcEEEEEechhcCchHHHHHhhhhhHHHHHHHHHHHHHHHCCCCcceEeee
Confidence            45568999999999999999999766 5778999988654322   2222      578999999999999999988866


Q ss_pred             EC--------CEEEEEEecCCCCCCCHHH------H---HHHHHH------HHhccCCCcEEEcCCCcEEEEecCCceec
Q 047066          171 ET--------EVPLLVNEFVKLPTISWEV------R---IRIAAE------TAEDIKSINILLDDNYTTKVCDFGASKLV  227 (256)
Q Consensus       171 ~~--------~~~~lv~e~~~~~~l~~~~------~---~~~~~~------i~rdlk~~NiLi~~~~~~ki~DFGla~~~  227 (256)
                      ..        +..+++|||++|.+|....      .   .....+      +|+|++|+|+++++++ ++|+|||..+..
T Consensus       106 ~~~~~~~~~~~~~~lvmEyi~G~tL~~~~~~~~~~~~~i~~~l~~lH~~gi~H~Dikp~Nili~~~g-i~liDfg~~~~~  184 (232)
T PRK10359        106 LAERKTLRYAHTYIMLIEYIEGVELNDMPEISEDVKAKIKASIESLHQHGMVSGDPHKGNFIVSKNG-LRIIDLSGKRCT  184 (232)
T ss_pred             ecccccccccCCeEEEEEEECCccHHHhhhccHHHHHHHHHHHHHHHHcCCccCCCChHHEEEeCCC-EEEEECCCcccc
Confidence            33        3588999999998773321      1   111122      2369999999999988 999999988765

>KOG0668 consensus Casein kinase II, alpha subunit [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.60  E-value=1.2e-16  Score=125.20  Aligned_cols=128  Identities=21%  Similarity=0.366  Sum_probs=103.5

Q ss_pred             cCCCcccceeeeeCceEEEEEEE-CCCcEEEEEEecccChhHHHHHHHHHHHHHhCC-CCcccceeeEEEE--CCEEEEE
Q 047066          103 TNNYAYDRMIGRGGYGTVFLGSL-SDNKAIAIKKSRIVYQSQIEQCINKVVVLSQIN-HRNVVGLLGCCLE--TEVPLLV  178 (256)
Q Consensus       103 ~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~l~~~~~~--~~~~~lv  178 (256)
                      .++|++.+.+|.|.+++||.|.. .++..++||.+++...   ..+.+|+.+|..|. ||||+++++...+  +..+.++
T Consensus        37 ~ddYeivrk~GRGKYSEVFeg~~~~~~eK~ViKiLKPVkk---kKIkREikIL~nL~gg~NIi~L~DiV~Dp~SktpaLi  113 (338)
T KOG0668|consen   37 QDDYEIVRKVGRGKYSEVFEGINITNNEKCVIKILKPVKK---KKIKREIKILQNLRGGPNIIKLLDIVKDPESKTPSLI  113 (338)
T ss_pred             cchHHHHHHHcCccHhhHhcccccCCCceEEEeeechHHH---HHHHHHHHHHHhccCCCCeeehhhhhcCccccCchhH
Confidence            36789999999999999999984 5788899999887654   55779999999995 9999999999876  4458899


Q ss_pred             EecCCCCC-------CC-------------HHHHHHHHHHHHhccCCCcEEEcCC-CcEEEEecCCceecCCCCce
Q 047066          179 NEFVKLPT-------IS-------------WEVRIRIAAETAEDIKSINILLDDN-YTTKVCDFGASKLVPIDETQ  233 (256)
Q Consensus       179 ~e~~~~~~-------l~-------------~~~~~~~~~~i~rdlk~~NiLi~~~-~~~ki~DFGla~~~~~~~~~  233 (256)
                      +||.++-.       |+             ....++-...++||+||.|++||.. ..++|+|+|+|.+..+...+
T Consensus       114 FE~v~n~Dfk~ly~tl~d~dIryY~~elLkALdyCHS~GImHRDVKPhNvmIdh~~rkLrlIDWGLAEFYHp~~eY  189 (338)
T KOG0668|consen  114 FEYVNNTDFKQLYPTLTDYDIRYYIYELLKALDYCHSMGIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPGKEY  189 (338)
T ss_pred             hhhhccccHHHHhhhhchhhHHHHHHHHHHHHhHHHhcCcccccCCcceeeechhhceeeeeecchHhhcCCCcee
Confidence            99998733       22             2334555566789999999999965 58999999999988765443

>cd05576 STKc_RPK118_like Catalytic domain of the Protein Serine/Threonine Kinases, RPK118 and similar proteins

Probab=99.60  E-value=1.1e-14  Score=118.68  Aligned_cols=133  Identities=20%  Similarity=0.095  Sum_probs=97.1

Q ss_pred             eCceEEEEEEEC-CCcEEEEEEecccChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEecCCCCCC------
Q 047066          115 GGYGTVFLGSLS-DNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEFVKLPTI------  187 (256)
Q Consensus       115 G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~~~~l------  187 (256)
                      |.+|+||++..+ +++.+|+|.+.....     +..|...+....|||++++++++...+..+++|||+++++|      
T Consensus         4 g~~~~v~~~~~~~~~~~~~~K~i~~~~~-----~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~   78 (237)
T cd05576           4 GVIDKVLLVMDTRTQQTFILKGLRKSSE-----YSRERLTIIPHCVPNMVCLHKYIVSEDSVFLVLQHAEGGKLWSHISK   78 (237)
T ss_pred             cccceEEEEEEccCCcEEEEEeecchhh-----hhhHHHHHHhcCCCceeehhhheecCCeEEEEEecCCCCCHHHHHHH
Confidence            789999999965 688999998865432     23444555556799999999999999999999999998775      


Q ss_pred             ----CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceeeeeeeecccc----cc
Q 047066          188 ----SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTLGY----YL  246 (256)
Q Consensus       188 ----~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~~~~Gt~~y----~~  246 (256)
                          ++.....++.+++             +||||+||+++.++.++++|||++.......    ....++..|    ..
T Consensus        79 ~~~l~~~~~~~~~~ql~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~~l~df~~~~~~~~~~----~~~~~~~~y~aPE~~  154 (237)
T cd05576          79 FLNIPEECVKRWAAEMVVALDALHREGIVCRDLNPNNILLDDRGHIQLTYFSRWSEVEDSC----DGEAVENMYCAPEVG  154 (237)
T ss_pred             hcCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHHHEEEcCCCCEEEecccchhcccccc----ccCCcCccccCCccc
Confidence                3344444454443             6999999999999999999999887654321    112244455    33


Q ss_pred             cccCCCCCCC
Q 047066          247 HTSQGTLNKE  256 (256)
Q Consensus       247 ~~~~~t~ksD  256 (256)
                      .++.++.++|
T Consensus       155 ~~~~~~~~~D  164 (237)
T cd05576         155 GISEETEACD  164 (237)
T ss_pred             CCCCCCchhh
Confidence            4455666666

Serine/Threonine Kinases (STKs), RPK118-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RPK118-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily show similarity to human RPK118, which contains an N-terminal Phox homology (PX) domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain containing a long insert. Also included in the family is human RPK60 (or ribosomal protein S6 kinase-like 1), which also contains MIT and kinase domains but lacks a PX domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phospha

>PLN03225 Serine/threonine-protein kinase SNT7; Provisional

Probab=99.57  E-value=9.6e-15  Score=133.12  Aligned_cols=139  Identities=17%  Similarity=0.230  Sum_probs=89.8

Q ss_pred             hcCCCcccceeeeeCceEEEEEEEC-C----CcEEEEEEecccChhHHHHHHHHHHHHHhCCCCcccceeeE------EE
Q 047066          102 ATNNYAYDRMIGRGGYGTVFLGSLS-D----NKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGC------CL  170 (256)
Q Consensus       102 ~~~~~~~~~~lg~G~~g~V~~~~~~-~----~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~------~~  170 (256)
                      ..++|++.+.||+|+||.||+|... +    +..||+|++......  +....|  .+....+.++..+...      +.
T Consensus       130 ~~~~y~l~~~LG~G~FG~VYka~~~~~~~~~~~~vAvK~~~~~~~~--e~~~~e--~l~~~~~~~~~~~~~~~~~~~~~~  205 (566)
T PLN03225        130 KKDDFVLGKKLGEGAFGVVYKASLVNKQSKKEGKYVLKKATEYGAV--EIWMNE--RVRRACPNSCADFVYGFLEPVSSK  205 (566)
T ss_pred             ccCCeEEeEEEeeCCCeEEEEEEEcCCccccCcEEEEEEecccchh--HHHHHH--HHHhhchhhHHHHHHhhhcccccc
Confidence            4578999999999999999999975 4    689999987543221  111111  1112222222222111      23


Q ss_pred             ECCEEEEEEecCCCCCCCHHH------------------------------HHHHHHH-------------HHhccCCCc
Q 047066          171 ETEVPLLVNEFVKLPTISWEV------------------------------RIRIAAE-------------TAEDIKSIN  207 (256)
Q Consensus       171 ~~~~~~lv~e~~~~~~l~~~~------------------------------~~~~~~~-------------i~rdlk~~N  207 (256)
                      ..+..++++||+.+++|....                              ...++.|             +||||||+|
T Consensus       206 ~~~~~~LV~ey~~~gsL~~~l~~~~~~~~v~~~l~~~~~~l~~~~~r~~~~i~~i~~qll~aL~yLH~~gIiHRDLKP~N  285 (566)
T PLN03225        206 KEDEYWLVWRYEGESTLADLMQSKEFPYNVEPYLLGKVQDLPKGLERENKIIQTIMRQILFALDGLHSTGIVHRDVKPQN  285 (566)
T ss_pred             cCCceEEEEEecCCCcHHHHHHhcCCchhHHHHhccchhhccccchhhHHHHHHHHHHHHHHHHHHHHCCEEeCcCCHHH
Confidence            566799999999887752211                              1123333             337999999


Q ss_pred             EEEcC-CCcEEEEecCCceecCCCCceeeeeeeecccc
Q 047066          208 ILLDD-NYTTKVCDFGASKLVPIDETQLSTMVQGTLGY  244 (256)
Q Consensus       208 iLi~~-~~~~ki~DFGla~~~~~~~~~~~~~~~Gt~~y  244 (256)
                      ||+++ ++.+||+|||+|+.+............||+.|
T Consensus       286 ILl~~~~~~~KL~DFGlA~~l~~~~~~~~~~~~~t~~Y  323 (566)
T PLN03225        286 IIFSEGSGSFKIIDLGAAADLRVGINYIPKEFLLDPRY  323 (566)
T ss_pred             EEEeCCCCcEEEEeCCCccccccccccCCcccccCCCc
Confidence            99986 57999999999987654433334455688888

>smart00220 S_TKc Serine/Threonine protein kinases, catalytic domain

Probab=99.56  E-value=4.8e-14  Score=114.17  Aligned_cols=139  Identities=24%  Similarity=0.305  Sum_probs=107.4

Q ss_pred             CceEEEEEEEC-CCcEEEEEEecccChhH-HHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEecCCCCCCC-----
Q 047066          116 GYGTVFLGSLS-DNKAIAIKKSRIVYQSQ-IEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEFVKLPTIS-----  188 (256)
Q Consensus       116 ~~g~V~~~~~~-~~~~vavK~~~~~~~~~-~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~~~~l~-----  188 (256)
                      +||.||+|... +++.+++|......... .+.+.+|+..+++++|+|++++.+.+......++++||+.+++|.     
T Consensus         1 ~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~l~~e~~~~~~L~~~~~~   80 (244)
T smart00220        1 SFGKVYLARDKKTGKLVAIKVIKKEKIKKKRERILREISILKKLKHPNIVRLYDVFEDEDKLYLVMEYCDGGDLFDLLKK   80 (244)
T ss_pred             CceEEEEEEECCCCcEEEEEEecccccccHHHHHHHHHHHHHhCCCCcHHHHHhheeeCCEEEEEEeCCCCCCHHHHHHh
Confidence            57999999976 48899999887654333 678999999999999999999999999999999999999886653     


Q ss_pred             -----HHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceeeeeeeecccc----cc
Q 047066          189 -----WEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTLGY----YL  246 (256)
Q Consensus       189 -----~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~~~~Gt~~y----~~  246 (256)
                           ......++.+++             +||+|+||++++++.++|+|||++.......  ......|++.|    ..
T Consensus        81 ~~~~~~~~~~~~~~~l~~~l~~lh~~~i~h~~i~~~ni~~~~~~~~~l~d~~~~~~~~~~~--~~~~~~~~~~~~~pE~~  158 (244)
T smart00220       81 RGRLSEDEARFYARQILSALEYLHSNGIIHRDLKPENILLDEDGHVKLADFGLARQLDPGG--LLTTFVGTPEYMAPEVL  158 (244)
T ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHHcCeecCCcCHHHeEECCCCcEEEccccceeeecccc--ccccccCCcCCCCHHHH
Confidence                 333344444444             5999999999999999999999998875432  12233466667    33


Q ss_pred             cccCCCCCCC
Q 047066          247 HTSQGTLNKE  256 (256)
Q Consensus       247 ~~~~~t~ksD  256 (256)
                      ....+++++|
T Consensus       159 ~~~~~~~~~D  168 (244)
T smart00220      159 LGKGYGKAVD  168 (244)
T ss_pred             ccCCCCchhh
Confidence            3556676666

Phosphotransferases. Serine or threonine-specific kinase subfamily.

>PRK10345 hypothetical protein; Provisional

Probab=99.56  E-value=1.7e-14  Score=115.18  Aligned_cols=118  Identities=14%  Similarity=0.150  Sum_probs=81.8

Q ss_pred             cccceeeeeCceEEEEEEECCCcEEEEEEecccChhHHHHHHHHHHHHHhC-----CCCcccceeeEEEECC---E-EEE
Q 047066          107 AYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQI-----NHRNVVGLLGCCLETE---V-PLL  177 (256)
Q Consensus       107 ~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-----~h~niv~l~~~~~~~~---~-~~l  177 (256)
                      .-.+.||+|+||.||.  ++.....+||+.........+.+.+|+.+++.+     +||||++++|++.++.   . ..+
T Consensus         5 ~~~~~LG~G~~~~Vy~--hp~~~~k~IKv~~~~~~~~~~~~~rEi~~l~~L~~~~~~h~nIvr~yg~~et~~g~g~v~~~   82 (210)
T PRK10345          5 SEQSPLGTGRHRKCYA--HPEDAQRCIKIVYHRGDGGDKEIRRELKYYAHLSRRLIDWSGIPRYYGTVETDCGTGYVYDV   82 (210)
T ss_pred             CCcceecCCCceEEEE--CCCCcCeEEEEEeccccchHHHHHHHHHHHHHhhccCCCCcccceeeEEEEeCCCCeEEEEE
Confidence            3457899999999996  433333368887654444557789999999999     5799999999999863   3 447


Q ss_pred             EEec--CCCCCCCHHHH-----------HHHHH----------HHHhccCCCcEEEcC----CCcEEEEe-cCCcee
Q 047066          178 VNEF--VKLPTISWEVR-----------IRIAA----------ETAEDIKSINILLDD----NYTTKVCD-FGASKL  226 (256)
Q Consensus       178 v~e~--~~~~~l~~~~~-----------~~~~~----------~i~rdlk~~NiLi~~----~~~~ki~D-FGla~~  226 (256)
                      |+||  +.+++|.....           ..+..          .++|||||+|||++.    +..++|+| ||....
T Consensus        83 I~e~~G~~~~tL~~~l~~~~~~e~~~~~~~~L~~l~~yLh~~~IvhrDlKp~NILl~~~~~~~~~~~LiDg~G~~~~  159 (210)
T PRK10345         83 IADFDGKPSITLTEFAEQCRYEEDVAQLRQLLKKLKRYLLDNRIVTMELKPQNILCQRISESEVIPVVCDNIGESTF  159 (210)
T ss_pred             EecCCCCcchhHHHHHHcccccHhHHHHHHHHHHHHHHHHHCCEeecCCCHHHEEEeccCCCCCcEEEEECCCCcce
Confidence            8999  44556522111           11111          133799999999974    33799999 554443

>cd05144 RIO2_C RIO kinase family; RIO2, C-terminal catalytic domain

Probab=99.56  E-value=5.2e-14  Score=111.84  Aligned_cols=121  Identities=19%  Similarity=0.173  Sum_probs=87.7

Q ss_pred             CCCcccceeeeeCceEEEEEEECCCcEEEEEEecccChh----------------------HHHHHHHHHHHHHhCCCCc
Q 047066          104 NNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQS----------------------QIEQCINKVVVLSQINHRN  161 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~----------------------~~~~~~~E~~~l~~l~h~n  161 (256)
                      ..|.+.+.||+|+||.||++..++++.+|+|..+.....                      .......|..++..+.|++
T Consensus        15 ~~~~~~~~i~~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~   94 (198)
T cd05144          15 VVESLGNQIGVGKESDVYLALDPDGNPVALKFHRLGRTSFRKVKRKRDYLGDRKHASWLYLSRLAAQKEFAALKALYEEG   94 (198)
T ss_pred             chhhcCCccccCcceEEEEEEcCCCCEEEEEEEecccchhhhhcchHHHHhccccchhHHHhHHHHHHHHHHHHHHHHcC
Confidence            347778999999999999999888999999976532210                      1123567888899887774


Q ss_pred             --ccceeeEEEECCEEEEEEecCCCCCCCHHHH--------HHHHHH---------HHhccCCCcEEEcCCCcEEEEecC
Q 047066          162 --VVGLLGCCLETEVPLLVNEFVKLPTISWEVR--------IRIAAE---------TAEDIKSINILLDDNYTTKVCDFG  222 (256)
Q Consensus       162 --iv~l~~~~~~~~~~~lv~e~~~~~~l~~~~~--------~~~~~~---------i~rdlk~~NiLi~~~~~~ki~DFG  222 (256)
                        +...++    ....+++|||++++++.....        ..++.+         +|+||+|+||++++++.++|+|||
T Consensus        95 i~v~~~~~----~~~~~lv~e~~~g~~L~~~~~~~~~~~~~~~i~~~l~~lh~~gi~H~Dl~p~Nill~~~~~~~liDfg  170 (198)
T cd05144          95 FPVPKPID----WNRHAVVMEYIDGVELYRVRVLEDPEEVLDEILEEIVKAYKHGIIHGDLSEFNILVDDDEKIYIIDWP  170 (198)
T ss_pred             CCCCceee----cCCceEEEEEeCCcchhhccccccHHHHHHHHHHHHHHHHHCCCCcCCCCcccEEEcCCCcEEEEECC
Confidence              444443    245689999999987643221        122222         226999999999999999999999


Q ss_pred             CceecC
Q 047066          223 ASKLVP  228 (256)
Q Consensus       223 la~~~~  228 (256)
                      ++....
T Consensus       171 ~~~~~~  176 (198)
T cd05144         171 QMVSTD  176 (198)
T ss_pred             ccccCC
Confidence            997654

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO2 is present in archaea and eukaryotes. It contains an N-terminal winged helix (wHTH) domain and a C-terminal RIO kinase catalytic domain. The wHTH domain is primarily seen in DNA-binding proteins, although some wHTH dom

>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]

Probab=99.53  E-value=1.1e-14  Score=128.56  Aligned_cols=146  Identities=21%  Similarity=0.197  Sum_probs=110.0

Q ss_pred             cCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccChhHHHHHHHHHHHHHhC-CCCcccceeeEEEECCEEEEEEe
Q 047066          103 TNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVYQSQIEQCINKVVVLSQI-NHRNVVGLLGCCLETEVPLLVNE  180 (256)
Q Consensus       103 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~lv~e  180 (256)
                      ++.|.+...+|.|+|+.|-.|... +++..++|.+....    .+..+|+.++... +|||++++.+.+.+....|+|||
T Consensus       321 ~~~y~~~~~~~~gs~s~~~~~~~~~t~~~~~vkii~~~~----~~~~~e~~~~~~~~~h~niv~~~~v~~~~~~~~~v~e  396 (612)
T KOG0603|consen  321 TESYEFREELGEGSFSAVKYCESSPTDQEPAVKIISKRA----DDNQDEIPISLLVRDHPNIVKSHDVYEDGKEIYLVME  396 (612)
T ss_pred             chhhccccccCCCCccceeeeeccccccchhheeccccc----cccccccchhhhhcCCCcceeecceecCCceeeeeeh
Confidence            567888889999999999888854 67889999886542    2344677776666 89999999999999999999999


Q ss_pred             cCCCCCCCHH---------HHHHHHHHH-------------HhccCCCcEEE-cCCCcEEEEecCCceecCCCCceeeee
Q 047066          181 FVKLPTISWE---------VRIRIAAET-------------AEDIKSINILL-DDNYTTKVCDFGASKLVPIDETQLSTM  237 (256)
Q Consensus       181 ~~~~~~l~~~---------~~~~~~~~i-------------~rdlk~~NiLi-~~~~~~ki~DFGla~~~~~~~~~~~~~  237 (256)
                      .++++.+...         .+.+++.++             +|||||+|||+ ++.++++|+|||.++.....    ...
T Consensus       397 ~l~g~ell~ri~~~~~~~~e~~~w~~~lv~Av~~LH~~gvvhRDLkp~NIL~~~~~g~lrltyFG~a~~~~~~----~~t  472 (612)
T KOG0603|consen  397 LLDGGELLRRIRSKPEFCSEASQWAAELVSAVDYLHEQGVVHRDLKPGNILLDGSAGHLRLTYFGFWSELERS----CDT  472 (612)
T ss_pred             hccccHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhcCeeecCCChhheeecCCCCcEEEEEechhhhCchh----hcc
Confidence            9999765221         222233332             38999999999 68999999999999987544    111


Q ss_pred             eeecccc----cccccCCCCCCC
Q 047066          238 VQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       238 ~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      .+=|..|    ......+|+++|
T Consensus       473 p~~t~~y~APEvl~~~~yt~acD  495 (612)
T KOG0603|consen  473 PALTLQYVAPEVLAIQEYTEACD  495 (612)
T ss_pred             cchhhcccChhhhccCCCCcchh
Confidence            2234445    555778888887

>KOG1024 consensus Receptor-like protein tyrosine kinase RYK/derailed [Signal transduction mechanisms]

Probab=99.53  E-value=2.9e-14  Score=119.55  Aligned_cols=160  Identities=18%  Similarity=0.274  Sum_probs=119.2

Q ss_pred             HHHHhhcCCCcccceeeeeCceEEEEEEEC------CCcEEEEEEeccc-ChhHHHHHHHHHHHHHhCCCCcccceeeEE
Q 047066           97 GELKIATNNYAYDRMIGRGGYGTVFLGSLS------DNKAIAIKKSRIV-YQSQIEQCINKVVVLSQINHRNVVGLLGCC  169 (256)
Q Consensus        97 ~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~------~~~~vavK~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l~~~~  169 (256)
                      .++.+.+.++++..++-+|.||+||.|.+.      +.+.|-+|.++.. ++-+...++.|..++..+.|||+.++.+.+
T Consensus       277 ~~l~v~r~Rv~l~~llqEGtFGri~~gI~~eEdt~n~~q~v~vKTvk~~AS~iQv~~~L~es~lly~~sH~nll~V~~V~  356 (563)
T KOG1024|consen  277 QELTVQRCRVRLSCLLQEGTFGRIYRGIWREEDTYNDCQEVLVKTVKQHASQIQVNLLLQESMLLYGASHPNLLSVLGVS  356 (563)
T ss_pred             HhhhhhhhheechhhhhcCchhheeeeeecccCCcchHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCcCCCccceeEEE
Confidence            345666777888889999999999999654      3456777777654 355668899999999999999999999998


Q ss_pred             EE-CCEEEEEEecCCCCCC------------------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEE
Q 047066          170 LE-TEVPLLVNEFVKLPTI------------------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTK  217 (256)
Q Consensus       170 ~~-~~~~~lv~e~~~~~~l------------------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~k  217 (256)
                      .+ ...+++++.++..|+|                  +..+...++.|++             +||.++|++||+..++|
T Consensus       357 ie~~~~P~V~y~~~~~gNLK~FL~~Cr~~~~~~aqtvtt~qlV~masQla~am~hlh~~~ViHkDiAaRNCvIdd~LqVk  436 (563)
T KOG1024|consen  357 IEDYATPFVLYPATGVGNLKSFLQICRGDDPSYAQTVTTIQLVLMASQLAMAMEHLHNHGVIHKDIAARNCVIDDQLQVK  436 (563)
T ss_pred             eeccCcceEEEeccCcchHHHHHHHhccCCCccccchhHHHHHHHHHHHHHHHHHHHhcCcccchhhhhcceehhheeEE
Confidence            76 5667888888766554                  4455566676665             59999999999999999


Q ss_pred             EEecCCceecCCCCceeeeeee-ecccc----cccccCCCCCCC
Q 047066          218 VCDFGASKLVPIDETQLSTMVQ-GTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       218 i~DFGla~~~~~~~~~~~~~~~-Gt~~y----~~~~~~~t~ksD  256 (256)
                      |+|=.++|.+-+.+..-..... -...|    .+...+|+.+||
T Consensus       437 ltDsaLSRDLFP~DYhcLGDnEnRPvkWMslEal~n~~yssasD  480 (563)
T KOG1024|consen  437 LTDSALSRDLFPGDYHCLGDNENRPVKWMSLEALQNSHYSSASD  480 (563)
T ss_pred             eccchhccccCcccccccCCCCCCcccccCHHHHhhhhhcchhh
Confidence            9999999988654433211100 11223    666777877776

>cd00180 PKc Catalytic domain of Protein Kinases

Probab=99.52  E-value=4.5e-13  Score=105.73  Aligned_cols=119  Identities=35%  Similarity=0.527  Sum_probs=97.7

Q ss_pred             eeeeCceEEEEEEEC-CCcEEEEEEecccChh-HHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEecCCCCCC--
Q 047066          112 IGRGGYGTVFLGSLS-DNKAIAIKKSRIVYQS-QIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEFVKLPTI--  187 (256)
Q Consensus       112 lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~-~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~~~~l--  187 (256)
                      ||+|.+|.||++... ++..+++|........ ..+.+.+|+..++.++|++++++++++......++++|++.+++|  
T Consensus         1 l~~g~~~~v~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~~~~e~~~~~~l~~   80 (215)
T cd00180           1 LGEGGFGTVYLARDKKTGKKVAIKIIKKEDSSSLLEELLREIEILKKLNHPNIVKLYGVFEDENHLYLVMEYCEGGSLKD   80 (215)
T ss_pred             CCcCCceEEEEEEecCCCcEEEEEEeccccchhHHHHHHHHHHHHHhcCCCCeeeEeeeeecCCeEEEEEecCCCCcHHH
Confidence            589999999999975 3889999988765432 456789999999999999999999999998999999999986554  


Q ss_pred             ---------CHHHHHHHHHHHH-------------hccCCCcEEEcC-CCcEEEEecCCceecCCC
Q 047066          188 ---------SWEVRIRIAAETA-------------EDIKSINILLDD-NYTTKVCDFGASKLVPID  230 (256)
Q Consensus       188 ---------~~~~~~~~~~~i~-------------rdlk~~NiLi~~-~~~~ki~DFGla~~~~~~  230 (256)
                               +......++.+++             +||+|.||+++. ++.++|+|||.+......
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~~~H~dl~~~ni~~~~~~~~~~l~d~~~~~~~~~~  146 (215)
T cd00180          81 LLKENEGKLSEDEILRILLQILEGLEYLHSNGIIHRDLKPENILLDSDNGKVKLADFGLSKLLTSD  146 (215)
T ss_pred             HHHhccCCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHhhEEEeCCCCcEEEecCCceEEccCC
Confidence                     3334444554544             499999999999 899999999999876543

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which

>PRK14879 serine/threonine protein kinase; Provisional

Probab=99.52  E-value=1.3e-13  Score=110.36  Aligned_cols=116  Identities=17%  Similarity=0.245  Sum_probs=90.1

Q ss_pred             ceeeeeCceEEEEEEECCCcEEEEEEecccC---h-----hHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEec
Q 047066          110 RMIGRGGYGTVFLGSLSDNKAIAIKKSRIVY---Q-----SQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEF  181 (256)
Q Consensus       110 ~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~---~-----~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~  181 (256)
                      +.||+|++|.||+|.. ++..+++|......   +     .....+.+|+.++..++|+++.....++...+..+++|||
T Consensus         2 ~~l~~G~~~~vy~~~~-~~~~~~vK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~~~~~~lv~e~   80 (211)
T PRK14879          2 KLIKRGAEAEIYLGDF-LGIKAVIKWRIPKRYRHPELDERIRRERTRREARIMSRARKAGVNVPAVYFVDPENFIIVMEY   80 (211)
T ss_pred             cccccCceEEEEEEee-CCCceEEEEeCCcCCcChHHHHHHHHHHHHHHHHHHHHHHHCCCCCCeEEEEeCCCCEEEEEE
Confidence            5789999999999988 67788998754321   1     1124578899999999999998888887777888999999


Q ss_pred             CCCCCCCHHHH------HHHHHHH-------------HhccCCCcEEEcCCCcEEEEecCCceec
Q 047066          182 VKLPTISWEVR------IRIAAET-------------AEDIKSINILLDDNYTTKVCDFGASKLV  227 (256)
Q Consensus       182 ~~~~~l~~~~~------~~~~~~i-------------~rdlk~~NiLi~~~~~~ki~DFGla~~~  227 (256)
                      +++++|.....      ..++.++             |+|++|.|||++ ++.++|+|||+++..
T Consensus        81 ~~G~~L~~~~~~~~~~~~~i~~~i~~~l~~lH~~~i~H~Dl~p~Nil~~-~~~~~liDf~~a~~~  144 (211)
T PRK14879         81 IEGEPLKDLINSNGMEELELSREIGRLVGKLHSAGIIHGDLTTSNMILS-GGKIYLIDFGLAEFS  144 (211)
T ss_pred             eCCcCHHHHHHhccHHHHHHHHHHHHHHHHHHhCCcccCCCCcccEEEE-CCCEEEEECCcccCC
Confidence            99988753321      2333333             369999999999 789999999999864

>KOG1165 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.52  E-value=5.4e-14  Score=115.77  Aligned_cols=140  Identities=24%  Similarity=0.323  Sum_probs=107.3

Q ss_pred             cCCCcccceeeeeCceEEEEEE-ECCCcEEEEEEecccChhHHHHHHHHHHHHHhC-CCCcccceeeEEEECCEEEEEEe
Q 047066          103 TNNYAYDRMIGRGGYGTVFLGS-LSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQI-NHRNVVGLLGCCLETEVPLLVNE  180 (256)
Q Consensus       103 ~~~~~~~~~lg~G~~g~V~~~~-~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~lv~e  180 (256)
                      .-+|.+.+.||+|+||.++.|. +-+++.||||.-..  ++...++..|....+.| ..++|...+-+...+-.-.+|+|
T Consensus        27 G~hyrVGkKIGeGsFG~lf~G~Nl~nne~VAIKfEPr--kS~APQLrdEYr~YKlL~g~~GIP~vYYFGqeG~~NiLVid  104 (449)
T KOG1165|consen   27 GPHYRVGKKIGEGSFGVLFLGKNLYNNEPVAIKFEPR--KSEAPQLRDEYRTYKLLGGTEGIPQVYYFGQEGKYNILVID  104 (449)
T ss_pred             cccceeccccccCcceeeecccccccCceEEEEeccc--cCCcchHHHHHHHHHHHcCCCCCCceeeeccccchhhhhhh
Confidence            3579999999999999999998 44799999996432  23446778899998888 57999998877777777788988


Q ss_pred             cCC----------CCCCCHHHHHHHHHHHH-------------hccCCCcEEEcCC-----CcEEEEecCCceecCCCCc
Q 047066          181 FVK----------LPTISWEVRIRIAAETA-------------EDIKSINILLDDN-----YTTKVCDFGASKLVPIDET  232 (256)
Q Consensus       181 ~~~----------~~~l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~-----~~~ki~DFGla~~~~~~~~  232 (256)
                      .+.          +..++....+.++.|+.             |||||+|+||...     ..+.+.|||+|+.+-++.+
T Consensus       105 LLGPSLEDLFD~CgR~FSvKTV~miA~Qmi~rie~vH~k~LIYRDIKPdNFLIGrp~~k~~n~IhiiDFGmAK~YrDp~T  184 (449)
T KOG1165|consen  105 LLGPSLEDLFDLCGRRFSVKTVAMIAKQMITRIEYVHEKDLIYRDIKPDNFLIGRPGTKDANVIHIIDFGMAKEYRDPKT  184 (449)
T ss_pred             hhCcCHHHHHHHhcCcccHHhHHHHHHHHHHHHHHHHhcceeecccCccceeecCCCCCCCceEEEEeccchhhhcCccc
Confidence            763          24455555566666644             7999999999643     3689999999998866544


Q ss_pred             ee------eeeeeecccc
Q 047066          233 QL------STMVQGTLGY  244 (256)
Q Consensus       233 ~~------~~~~~Gt~~y  244 (256)
                      ..      .....||.+|
T Consensus       185 kqHIPYrE~KSLsGTARY  202 (449)
T KOG1165|consen  185 KQHIPYREHKSLSGTARY  202 (449)
T ss_pred             cccCccccccccccceee
Confidence            32      2456799999

>KOG1163 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.51  E-value=8e-14  Score=110.16  Aligned_cols=141  Identities=21%  Similarity=0.274  Sum_probs=103.4

Q ss_pred             hcCCCcccceeeeeCceEEEEEE-ECCCcEEEEEEecccChhHHHHHHHHHHHHHhCC-CCcccceeeEEEECCEEEEEE
Q 047066          102 ATNNYAYDRMIGRGGYGTVFLGS-LSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQIN-HRNVVGLLGCCLETEVPLLVN  179 (256)
Q Consensus       102 ~~~~~~~~~~lg~G~~g~V~~~~-~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~l~~~~~~~~~~~lv~  179 (256)
                      ....|.+.+.||+|+||.+|.|. ..+|..||+|.-.....  ..++..|..+.+.|+ ...|..+..+..+...-.+||
T Consensus        13 v~gky~lvrkiGsGSFGdIy~~~~i~~ge~VAiK~Es~~a~--hpqL~yEskvY~iL~~g~GiP~i~~y~~e~~ynvlVM   90 (341)
T KOG1163|consen   13 VGGKYKLVRKIGSGSFGDIYLGISITSGEEVAIKLESSKAK--HPQLLYESKVYRILQGGVGIPHIRHYGTEKDYNVLVM   90 (341)
T ss_pred             eccceEEEEeecCCchhheeeeeeccCCceEEEEeecccCC--CcchhHHHHHHHHhccCCCCchhhhhccccccceeee
Confidence            34689999999999999999998 46899999997544322  256788999999996 477888888888888889999


Q ss_pred             ecCCC----------CCCCHHHHHHHHH-------------HHHhccCCCcEEEcC---CCcEEEEecCCceecCCCCce
Q 047066          180 EFVKL----------PTISWEVRIRIAA-------------ETAEDIKSINILLDD---NYTTKVCDFGASKLVPIDETQ  233 (256)
Q Consensus       180 e~~~~----------~~l~~~~~~~~~~-------------~i~rdlk~~NiLi~~---~~~~ki~DFGla~~~~~~~~~  233 (256)
                      |.+..          ...+-...+..+-             -|||||||+|.|..-   ...+-++|||+|+.+.+..+.
T Consensus        91 dLLGPsLEdLfnfC~R~ftmkTvLMLaDQml~RiEyvH~r~fiHRDIKPdNFLMGlgrh~~kl~LIDFGLaKky~d~~t~  170 (341)
T KOG1163|consen   91 DLLGPSLEDLFNFCSRRFTMKTVLMLADQMLSRIEYVHLRNFIHRDIKPDNFLMGLGRHCNKLYLIDFGLAKKYRDIRTR  170 (341)
T ss_pred             eccCccHHHHHHHHhhhhhHHhHHHHHHHHHHHHHHHHhhccccccCCccceeeccccccceEEEEeccchhhhcccccc
Confidence            97643          1122222222222             355899999999963   347899999999987554332


Q ss_pred             e------eeeeeecccc
Q 047066          234 L------STMVQGTLGY  244 (256)
Q Consensus       234 ~------~~~~~Gt~~y  244 (256)
                      .      .....||..|
T Consensus       171 ~HIpyre~r~ltGTaRY  187 (341)
T KOG1163|consen  171 QHIPYREDRNLTGTARY  187 (341)
T ss_pred             ccCccccCCccceeeee
Confidence            2      2345799998

>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated

Probab=99.51  E-value=1.4e-13  Score=125.08  Aligned_cols=122  Identities=16%  Similarity=0.188  Sum_probs=91.3

Q ss_pred             CCcccceeeeeCceEEEEEEECCCcEEEEEE-eccc-C------hhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEE
Q 047066          105 NYAYDRMIGRGGYGTVFLGSLSDNKAIAIKK-SRIV-Y------QSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPL  176 (256)
Q Consensus       105 ~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~-~~~~-~------~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~  176 (256)
                      .|...+.||+|+||.||++.+.+. .+++|+ .... .      ....+++.+|+.++..++|++++....++...+..+
T Consensus       334 ~~~~~~~iG~G~~g~Vy~~~~~~~-~~v~k~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~~~~~~  412 (535)
T PRK09605        334 RKIPDHLIGKGAEADIKKGEYLGR-DAVIKERVPKGYRHPELDERLRTERTRAEARLLSEARRAGVPTPVIYDVDPEEKT  412 (535)
T ss_pred             ccCccceeccCCcEEEEEEeecCc-cceeEEEecccccchhHHHHHHHHHHHHHHHHHHhhcccCCCeeEEEEEeCCCCE
Confidence            345578999999999999987443 334432 2111 1      112356889999999999999998888888777889


Q ss_pred             EEEecCCCCCCCHHH--HHHHHHHH-------------HhccCCCcEEEcCCCcEEEEecCCceecC
Q 047066          177 LVNEFVKLPTISWEV--RIRIAAET-------------AEDIKSINILLDDNYTTKVCDFGASKLVP  228 (256)
Q Consensus       177 lv~e~~~~~~l~~~~--~~~~~~~i-------------~rdlk~~NiLi~~~~~~ki~DFGla~~~~  228 (256)
                      ++|||+++++|....  ...++.++             |+|+||+|||+ .++.++|+|||+|+...
T Consensus       413 lv~E~~~g~~L~~~l~~~~~~~~~i~~~L~~lH~~giiHrDlkp~NILl-~~~~~~liDFGla~~~~  478 (535)
T PRK09605        413 IVMEYIGGKDLKDVLEGNPELVRKVGEIVAKLHKAGIVHGDLTTSNFIV-RDDRLYLIDFGLGKYSD  478 (535)
T ss_pred             EEEEecCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCCChHHEEE-ECCcEEEEeCcccccCC
Confidence            999999999986543  23333333             36999999999 57799999999998753

>TIGR03724 arch_bud32 Kae1-associated kinase Bud32

Probab=99.49  E-value=2.7e-13  Score=107.61  Aligned_cols=115  Identities=18%  Similarity=0.254  Sum_probs=87.4

Q ss_pred             eeeeeCceEEEEEEECCCcEEEEEEecccC----h----hHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEecC
Q 047066          111 MIGRGGYGTVFLGSLSDNKAIAIKKSRIVY----Q----SQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEFV  182 (256)
Q Consensus       111 ~lg~G~~g~V~~~~~~~~~~vavK~~~~~~----~----~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~  182 (256)
                      .||+|++|.||++.+ ++..+++|......    .    ....++.+|+.++..++|+++.....++...+..+++|||+
T Consensus         1 ~ig~G~~~~vy~~~~-~~~~~viK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~~~~~~lv~e~~   79 (199)
T TIGR03724         1 LIAKGAEAIIYLGDF-LGLKAVIKERVPKSYRHPELDERIRRERTRNEARLLSRARKAGVNTPVVYDVDPDNKTIVMEYI   79 (199)
T ss_pred             CCCCCceEEEEEeec-CCccEEEEEecCCcCcCchHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEEEE
Confidence            479999999999996 67789999754321    1    11256788999999999888766666666777789999999


Q ss_pred             CCCCCCHHHHH---HHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceec
Q 047066          183 KLPTISWEVRI---RIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLV  227 (256)
Q Consensus       183 ~~~~l~~~~~~---~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~  227 (256)
                      +++++......   .++.+++             +|++|+||+++ ++.+++.|||+++..
T Consensus        80 ~g~~l~~~~~~~~~~~~~~i~~~l~~lH~~gi~H~Dl~~~Nil~~-~~~~~liDfg~a~~~  139 (199)
T TIGR03724        80 EGKPLKDVIEEGNDELLREIGRLVGKLHKAGIVHGDLTTSNIIVR-DDKLYLIDFGLGKYS  139 (199)
T ss_pred             CCccHHHHHhhcHHHHHHHHHHHHHHHHHCCeecCCCCcceEEEE-CCcEEEEECCCCcCC
Confidence            99887543322   3333333             59999999999 789999999998864

Members of this protein family are the Bud32 protein associated with Kae1 (kinase-associated endopeptidase 1) in the Archaea. In many Archaeal genomes, Kae1 and Bud32 are fused. The complex is homologous to the Kae1 and Bud32 subunits of the eukaryotic KEOPS complex, an apparently ancient protein kinase-containing molecular machine.

>PRK12274 serine/threonine protein kinase; Provisional

Probab=99.48  E-value=2.9e-13  Score=106.90  Aligned_cols=117  Identities=13%  Similarity=0.124  Sum_probs=84.9

Q ss_pred             cccceeeeeCceEEEEEEECCCcEEEEEEecccCh----hHHHHHHHHHHHHHhC-CCCcccceeeEEEECCEEEEEEec
Q 047066          107 AYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQ----SQIEQCINKVVVLSQI-NHRNVVGLLGCCLETEVPLLVNEF  181 (256)
Q Consensus       107 ~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~----~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~lv~e~  181 (256)
                      .+...|+.|.||+|+.+.. ++..++.+.+.....    -....+.+|+++|++| +|+++.+++++    +..+++|||
T Consensus         5 ~~~~~l~~~~f~~v~~~~~-~~~k~~~~~l~~~~~~~~~~~~~l~~rE~~iL~~L~~~~~vP~ll~~----~~~~lvmey   79 (218)
T PRK12274          5 AVNEPLKSDTFGRILLVRG-GERKFVRRDLSAAPWWLRGVAWWLARREALALRQLDGLPRTPRLLHW----DGRHLDRSY   79 (218)
T ss_pred             ccceeecCCCcceEEEeec-CCceeeecccccchhhhhhHHHHHHHHHHHHHHhcCCCCCCCEEEEE----cCEEEEEee
Confidence            3456899999999997766 667777665543221    1123578999999999 46889999886    346899999


Q ss_pred             CCCCCCCHHH---HHH-------HHHH------HHhcc-CCCcEEEcCCCcEEEEecCCceecC
Q 047066          182 VKLPTISWEV---RIR-------IAAE------TAEDI-KSINILLDDNYTTKVCDFGASKLVP  228 (256)
Q Consensus       182 ~~~~~l~~~~---~~~-------~~~~------i~rdl-k~~NiLi~~~~~~ki~DFGla~~~~  228 (256)
                      +.+.+|....   ...       ...+      +|+|| ||.|||+++++.++|+|||+|....
T Consensus        80 I~G~~L~~~~~~~~~~~~~qi~~~L~~lH~~GIvHrDL~kp~NILv~~~g~i~LIDFG~A~~~~  143 (218)
T PRK12274         80 LAGAAMYQRPPRGDLAYFRAARRLLQQLHRCGVAHNDLAKEANWLVQEDGSPAVIDFQLAVRGN  143 (218)
T ss_pred             ecCccHHhhhhhhhHHHHHHHHHHHHHHHHCcCccCCCCCcceEEEcCCCCEEEEECCCceecC
Confidence            9988773211   011       1112      33799 7999999999999999999998654

>KOG0671 consensus LAMMER dual specificity kinases [Signal transduction mechanisms]

Probab=99.48  E-value=1.6e-13  Score=114.62  Aligned_cols=150  Identities=22%  Similarity=0.227  Sum_probs=112.3

Q ss_pred             hcCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccChhHHHHHHHHHHHHHhCC-C-Cc----ccceeeEEEECCE
Q 047066          102 ATNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVYQSQIEQCINKVVVLSQIN-H-RN----VVGLLGCCLETEV  174 (256)
Q Consensus       102 ~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-h-~n----iv~l~~~~~~~~~  174 (256)
                      ...+|.+.+.+|+|.||+|..|..+ .+..||+|+++..... .+..+-|+++|.++. + |+    ++++.+||...+.
T Consensus        87 l~~Ry~i~~~lGeGtFGkV~ec~D~~~~~~vAlKIik~V~kY-reAa~iEi~vLqki~~~DP~g~~rcv~m~~wFdyrgh  165 (415)
T KOG0671|consen   87 LTNRYEIVDLLGEGTFGKVVECWDRETKEHVALKIIKNVDKY-REAALIEIEVLQKINESDPNGKFRCVQMRDWFDYRGH  165 (415)
T ss_pred             cccceehhhhhcCCcccceEEEeecCCCceehHHHHHHHHHH-hhHHHHHHHHHHHHHhcCCCCceEEEeeehhhhccCc
Confidence            3678999999999999999999865 4788999988765543 367788999999993 2 22    6788888999999


Q ss_pred             EEEEEecCCC-----------CCCCHHHHHHHHHHHHh-------------ccCCCcEEEcC------------------
Q 047066          175 PLLVNEFVKL-----------PTISWEVRIRIAAETAE-------------DIKSINILLDD------------------  212 (256)
Q Consensus       175 ~~lv~e~~~~-----------~~l~~~~~~~~~~~i~r-------------dlk~~NiLi~~------------------  212 (256)
                      .++|+|.+..           -+.+..+..+++.|+.+             ||||+|||+.+                  
T Consensus       166 iCivfellG~S~~dFlk~N~y~~fpi~~ir~m~~QL~~sv~fLh~~kl~HTDLKPENILfvss~~~~~~~~k~~~~~~r~  245 (415)
T KOG0671|consen  166 ICIVFELLGLSTFDFLKENNYIPFPIDHIRHMGYQLLESVAFLHDLKLTHTDLKPENILFVSSEYFKTYNPKKKVCFIRP  245 (415)
T ss_pred             eEEEEeccChhHHHHhccCCccccchHHHHHHHHHHHHHHHHHHhcceeecCCChheEEEeccceEEEeccCCccceecc
Confidence            9999998752           22445556677777663             99999999821                  


Q ss_pred             --CCcEEEEecCCceecCCCCceeeeeeeecccc----cccccCCCCCCC
Q 047066          213 --NYTTKVCDFGASKLVPIDETQLSTMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       213 --~~~~ki~DFGla~~~~~~~~~~~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                        +..+|+.|||.|..-...    .+.++-|..|    .+.+-.++..+|
T Consensus       246 ~ks~~I~vIDFGsAtf~~e~----hs~iVsTRHYRAPEViLgLGwS~pCD  291 (415)
T KOG0671|consen  246 LKSTAIKVIDFGSATFDHEH----HSTIVSTRHYRAPEVILGLGWSQPCD  291 (415)
T ss_pred             CCCcceEEEecCCcceeccC----cceeeeccccCCchheeccCcCCccC
Confidence              235899999999875433    2445677778    555656666655

>smart00090 RIO RIO-like kinase

Probab=99.48  E-value=3.2e-13  Score=110.10  Aligned_cols=123  Identities=16%  Similarity=0.085  Sum_probs=86.8

Q ss_pred             cCCCcccceeeeeCceEEEEEE--ECCCcEEEEEEecccChh------------------------HHHHHHHHHHHHHh
Q 047066          103 TNNYAYDRMIGRGGYGTVFLGS--LSDNKAIAIKKSRIVYQS------------------------QIEQCINKVVVLSQ  156 (256)
Q Consensus       103 ~~~~~~~~~lg~G~~g~V~~~~--~~~~~~vavK~~~~~~~~------------------------~~~~~~~E~~~l~~  156 (256)
                      ...|.+.+.||+|++|.||+|.  ..+|+.||+|..+.....                        ....+..|+..+.+
T Consensus        27 ~~~~~i~~~Lg~G~~g~Vy~a~~~~~~g~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~L~~  106 (237)
T smart00090       27 GILSAIGGCISTGKEANVYHALDFDGSGKERAVKIYRTGTLEFKRRDRYVDGDFRFKYRKINPRKLVRLWAEKEFRNLQR  106 (237)
T ss_pred             CchHHhCCeeccCcceeEEEEEecCCCCcEEEEEEEEcCcceecchhhhcccchhhccCCCCHHHHHHHHHHHHHHHHHH
Confidence            3458888999999999999998  458999999987643210                        11235689999999


Q ss_pred             CCCCc--ccceeeEEEECCEEEEEEecCCCCCCCHH----------HHHHHHHH--------------HHhccCCCcEEE
Q 047066          157 INHRN--VVGLLGCCLETEVPLLVNEFVKLPTISWE----------VRIRIAAE--------------TAEDIKSINILL  210 (256)
Q Consensus       157 l~h~n--iv~l~~~~~~~~~~~lv~e~~~~~~l~~~----------~~~~~~~~--------------i~rdlk~~NiLi  210 (256)
                      +.+..  +.+++++    ...++||||+.+.++...          ....++.+              +|+||||+||++
T Consensus       107 L~~~~i~~p~~~~~----~~~~lV~E~~~g~~L~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~g~iiH~Dikp~NIli  182 (237)
T smart00090      107 LYEAGVPVPKPIAW----RRNVLVMEFIGGDGLPAPRLKDVEPEEEEEFELYDDILEEMRKLYKEGELVHGDLSEYNILV  182 (237)
T ss_pred             HHhcCCCCCeeeEe----cCceEEEEEecCCcccccccccCCcchHHHHHHHHHHHHHHHHHHhcCCEEeCCCChhhEEE
Confidence            96533  3334432    235799999998665211          11222322              347999999999


Q ss_pred             cCCCcEEEEecCCceecCCC
Q 047066          211 DDNYTTKVCDFGASKLVPID  230 (256)
Q Consensus       211 ~~~~~~ki~DFGla~~~~~~  230 (256)
                      + ++.++|+|||.|.....+
T Consensus       183 ~-~~~i~LiDFg~a~~~~~~  201 (237)
T smart00090      183 H-DGKVVIIDVSQSVELDHP  201 (237)
T ss_pred             E-CCCEEEEEChhhhccCCc
Confidence            9 889999999999876544

>KOG0670 consensus U4/U6-associated splicing factor PRP4 [RNA processing and modification]

Probab=99.43  E-value=6.3e-14  Score=121.24  Aligned_cols=131  Identities=21%  Similarity=0.327  Sum_probs=98.5

Q ss_pred             HhhcCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccChhHHHHHHHHHHHHHhCC------CCcccceeeEEEEC
Q 047066          100 KIATNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVYQSQIEQCINKVVVLSQIN------HRNVVGLLGCCLET  172 (256)
Q Consensus       100 ~~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~------h~niv~l~~~~~~~  172 (256)
                      +..-.+|.+....|+|-|++|..|... .+.+||||++.... -....-+.|+++|++|+      --++++++..|...
T Consensus       428 E~LD~RY~V~~~~GkGvFs~Vvra~D~~r~~~vAiKIIRnNE-~M~KtGl~EleiLkKL~~AD~Edk~Hclrl~r~F~hk  506 (752)
T KOG0670|consen  428 ELLDSRYEVQGYTGKGVFSTVVRARDQARGQEVAIKIIRNNE-VMHKTGLKELEILKKLNDADPEDKFHCLRLFRHFKHK  506 (752)
T ss_pred             hhhcceeEEEeccccceeeeeeeccccCCCCeeEEEEeecch-HHhhhhhHHHHHHHHhhccCchhhhHHHHHHHHhhhc
Confidence            344567888889999999999999964 57899999997654 23355688999999996      34789999999999


Q ss_pred             CEEEEEEecCCC---------C---CCC------HHHHH-------HHHHHHHhccCCCcEEEcCC-CcEEEEecCCcee
Q 047066          173 EVPLLVNEFVKL---------P---TIS------WEVRI-------RIAAETAEDIKSINILLDDN-YTTKVCDFGASKL  226 (256)
Q Consensus       173 ~~~~lv~e~~~~---------~---~l~------~~~~~-------~~~~~i~rdlk~~NiLi~~~-~~~ki~DFGla~~  226 (256)
                      +++|+|+|.+..         |   -|.      ..+.+       .-+.-+|.||||.|||+++. ..+||||||.|..
T Consensus       507 nHLClVFE~LslNLRevLKKyG~nvGL~ikaVRsYaqQLflALklLK~c~vlHaDIKPDNiLVNE~k~iLKLCDfGSA~~  586 (752)
T KOG0670|consen  507 NHLCLVFEPLSLNLREVLKKYGRNVGLHIKAVRSYAQQLFLALKLLKKCGVLHADIKPDNILVNESKNILKLCDFGSASF  586 (752)
T ss_pred             ceeEEEehhhhchHHHHHHHhCcccceeehHHHHHHHHHHHHHHHHHhcCeeecccCccceEeccCcceeeeccCccccc
Confidence            999999997643         1   111      11122       22223446999999999875 5789999999988


Q ss_pred             cCCCC
Q 047066          227 VPIDE  231 (256)
Q Consensus       227 ~~~~~  231 (256)
                      .+.++
T Consensus       587 ~~ene  591 (752)
T KOG0670|consen  587 ASENE  591 (752)
T ss_pred             ccccc
Confidence            76554

>KOG1345 consensus Serine/threonine kinase [Signal transduction mechanisms]

Probab=99.43  E-value=1.8e-13  Score=109.93  Aligned_cols=123  Identities=20%  Similarity=0.390  Sum_probs=94.5

Q ss_pred             CCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccChhHHHHHHHHHHHHHhC-CCCcccceee-EEEECCEEEEEEe
Q 047066          104 NNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVYQSQIEQCINKVVVLSQI-NHRNVVGLLG-CCLETEVPLLVNE  180 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~-~~~~~~~~~lv~e  180 (256)
                      +.|.+.+.+|+|.||++.+++++ .++.+++|-++... ....+|.+|..---.| .|.||+.-++ .|++.+...+++|
T Consensus        24 d~y~I~k~lgeG~FgkIlL~eHr~s~t~ivlKavp~p~-tt~~dF~rEfhY~~~Ls~H~hIi~tY~vaFqt~d~YvF~qE  102 (378)
T KOG1345|consen   24 DVYTINKQLGEGRFGKILLAEHRQSKTRIVLKAVPRPQ-TTQADFVREFHYSFFLSPHQHIIDTYEVAFQTSDAYVFVQE  102 (378)
T ss_pred             hhhhHHHHhcccceeeEEeeeccCCceEEEeeccCcch-hhHHHHHHHhccceeeccchhhhHHHHHHhhcCceEEEeec
Confidence            67889999999999999999987 46778888765433 3457899998876666 6999998766 5677888899999


Q ss_pred             cCCCCCCCHH---------HHHHHH-------------HHHHhccCCCcEEE-c-CCCcEEEEecCCceec
Q 047066          181 FVKLPTISWE---------VRIRIA-------------AETAEDIKSINILL-D-DNYTTKVCDFGASKLV  227 (256)
Q Consensus       181 ~~~~~~l~~~---------~~~~~~-------------~~i~rdlk~~NiLi-~-~~~~~ki~DFGla~~~  227 (256)
                      |++.|+|...         ....++             .-+|||||.+|||| + +...+||+|||+.+..
T Consensus       103 ~aP~gdL~snv~~~GigE~~~K~v~~ql~SAi~fMHsknlVHRdlK~eNiLif~~df~rvKlcDFG~t~k~  173 (378)
T KOG1345|consen  103 FAPRGDLRSNVEAAGIGEANTKKVFAQLLSAIEFMHSKNLVHRDLKAENILIFDADFYRVKLCDFGLTRKV  173 (378)
T ss_pred             cCccchhhhhcCcccccHHHHHHHHHHHHHHHHHhhccchhhcccccceEEEecCCccEEEeeeccccccc
Confidence            9999887321         112222             23569999999999 3 3448999999998764

>KOG0665 consensus Jun-N-terminal kinase (JNK) [Signal transduction mechanisms]

Probab=99.40  E-value=5e-14  Score=115.20  Aligned_cols=150  Identities=22%  Similarity=0.266  Sum_probs=104.1

Q ss_pred             CCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC--hhHHHHHHHHHHHHHhCCCCcccceeeEEEECC------E
Q 047066          104 NNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY--QSQIEQCINKVVVLSQINHRNVVGLLGCCLETE------V  174 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~------~  174 (256)
                      .+|.-++.+|.|.- .|..+... .+++|++|+.....  ....++..+|..++..++|+|+++++.++....      .
T Consensus        17 ~Ry~nL~p~~~g~~-~v~~a~D~v~~~~v~ikk~~~pf~n~~~akra~rel~l~~~v~~~nii~l~n~ftP~~~l~~~~e   95 (369)
T KOG0665|consen   17 KRYVNLKPIGSGAQ-IVVAAFDQVLGRPVAIKKLSRPFQNQTHAKRAYRELKLMKCVNHKNIISLLNVFTPQKTLEEFQE   95 (369)
T ss_pred             eeeeeecccCCCCc-eEEecchhhccCceehhhhcCccccCccchhhhhhhhhhhhhcccceeeeeeccCccccHHHHHh
Confidence            46777778888876 45555543 58899999764322  233467789999999999999999999987433      5


Q ss_pred             EEEEEecCCCCC-------CC-------------HHHHHHHHHHHHhccCCCcEEEcCCCcEEEEecCCceecCCCCcee
Q 047066          175 PLLVNEFVKLPT-------IS-------------WEVRIRIAAETAEDIKSINILLDDNYTTKVCDFGASKLVPIDETQL  234 (256)
Q Consensus       175 ~~lv~e~~~~~~-------l~-------------~~~~~~~~~~i~rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~  234 (256)
                      .++|||+|....       ++             ....++-+..+||||||+||+++.+..+||.|||+|+.-..+  ..
T Consensus        96 ~y~v~e~m~~nl~~vi~~elDH~tis~i~yq~~~~ik~lhs~~IihRdLkPsnivv~~~~~lKi~dfg~ar~e~~~--~~  173 (369)
T KOG0665|consen   96 VYLVMELMDANLCQVILMELDHETISYILYQMLCGIKHLHSAGIIHRDLKPSNIVVNSDCTLKILDFGLARTEDTD--FM  173 (369)
T ss_pred             HHHHHHhhhhHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhcceeecccCcccceecchhheeeccchhhcccCcc--cc
Confidence            789999996521       11             122344455567899999999999999999999999864332  23


Q ss_pred             eeeeeecccc----cccccCCCCCCC
Q 047066          235 STMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       235 ~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      .+....|..|    .+.+..+.+++|
T Consensus       174 mtpyVvtRyyrapevil~~~~ke~vd  199 (369)
T KOG0665|consen  174 MTPYVVTRYYRAPEVILGMGYKENVD  199 (369)
T ss_pred             cCchhheeeccCchheeccCCcccch
Confidence            3444455555    334444665554

>cd05120 APH_ChoK_like Aminoglycoside 3'-phosphotransferase (APH) and Choline Kinase (ChoK) family

Probab=99.39  E-value=4.7e-12  Score=95.18  Aligned_cols=115  Identities=19%  Similarity=0.188  Sum_probs=91.1

Q ss_pred             cceeeeeCceEEEEEEECCCcEEEEEEecccChhHHHHHHHHHHHHHhCCC--CcccceeeEEEECCEEEEEEecCCCCC
Q 047066          109 DRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINH--RNVVGLLGCCLETEVPLLVNEFVKLPT  186 (256)
Q Consensus       109 ~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h--~niv~l~~~~~~~~~~~lv~e~~~~~~  186 (256)
                      .+.+|+|.++.||++...+ ..+++|.......  ...+.+|...+..++|  .++.+++++....+..++++||++++.
T Consensus         3 ~~~i~~g~~~~v~~~~~~~-~~~~iK~~~~~~~--~~~~~~e~~~~~~l~~~~~~~p~~~~~~~~~~~~~~v~e~~~g~~   79 (155)
T cd05120           3 IKLLKGGLTNRVYLLGTKD-EDYVLKINPSREK--GADREREVAILQLLARKGLPVPKVLASGESDGWSYLLMEWIEGET   79 (155)
T ss_pred             ceecccccccceEEEEecC-CeEEEEecCCCCc--hhHHHHHHHHHHHHHHcCCCCCeEEEEcCCCCccEEEEEecCCee
Confidence            4679999999999999844 7889998765433  4678899999999966  588899888887788999999999887


Q ss_pred             CCH---HHHHHHHHH----------------HHhccCCCcEEEcCCCcEEEEecCCcee
Q 047066          187 ISW---EVRIRIAAE----------------TAEDIKSINILLDDNYTTKVCDFGASKL  226 (256)
Q Consensus       187 l~~---~~~~~~~~~----------------i~rdlk~~NiLi~~~~~~ki~DFGla~~  226 (256)
                      +..   .....+..+                +|+|++|+|+++++.+.+++.|||.++.
T Consensus        80 ~~~~~~~~~~~~~~~~~~~l~~lh~~~~~~i~H~Dl~~~Nil~~~~~~~~l~Df~~~~~  138 (155)
T cd05120          80 LDEVSEEEKEDIAEQLAELLAKLHQLPLLVLCHGDLHPGNILVDDGKILGIIDWEYAGY  138 (155)
T ss_pred             cccCCHHHHHHHHHHHHHHHHHHhCCCceEEEecCCCcceEEEECCcEEEEEecccccC
Confidence            742   222222222                2359999999999989999999999875

The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). The family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides and macrolides, leads to their inactivation and to bacterial antibiotic resistance. Phosphorylation of choline, ethanolamine, and homoserine serves

>KOG1164 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.36  E-value=4.9e-12  Score=108.02  Aligned_cols=121  Identities=25%  Similarity=0.349  Sum_probs=90.5

Q ss_pred             CCcccceeeeeCceEEEEEEECCC--cEEEEEEecccChhHHHHHHHHHHHHHhCCC----CcccceeeEE-EECCEEEE
Q 047066          105 NYAYDRMIGRGGYGTVFLGSLSDN--KAIAIKKSRIVYQSQIEQCINKVVVLSQINH----RNVVGLLGCC-LETEVPLL  177 (256)
Q Consensus       105 ~~~~~~~lg~G~~g~V~~~~~~~~--~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h----~niv~l~~~~-~~~~~~~l  177 (256)
                      +|.+.+.||+|+||.||.+.....  ..+|+|............+..|..++..+.+    +++..+.+.. .....-++
T Consensus        19 ~~~i~~~iG~G~fG~V~~v~~~~~~~~~~a~K~e~~~~~~~~~~l~~E~~vl~~l~~~~~~~~~~~~~~~G~~~~~~~~i   98 (322)
T KOG1164|consen   19 RYKLGKKIGEGGFGAVYLVSDKSEKNKEYAKKLEKKELGSKPSVLKIEIQVLKKLEKKNGPSHFPKLLDHGRSTEDFNFI   98 (322)
T ss_pred             ceEEeeeccccCCceEEEEEecCCCCeeEEEEEEEecccCCCccchhHHHHHHHHhhhcCCCCCCEEEEeccCCCceeEE
Confidence            799999999999999999996543  4788887655432222367788898888862    5788888888 46778899


Q ss_pred             EEecCCC-----------CCCCHHHHHHHHHH-------------HHhccCCCcEEEcCC-----CcEEEEecCCce
Q 047066          178 VNEFVKL-----------PTISWEVRIRIAAE-------------TAEDIKSINILLDDN-----YTTKVCDFGASK  225 (256)
Q Consensus       178 v~e~~~~-----------~~l~~~~~~~~~~~-------------i~rdlk~~NiLi~~~-----~~~ki~DFGla~  225 (256)
                      ||+.+..           +.++....++++.|             +||||||.|+++...     ..+.|.|||+|+
T Consensus        99 VM~l~G~sL~dl~~~~~~~~fs~~T~l~ia~q~l~~l~~lH~~G~iHRDiKp~N~~~g~~~~~~~~~~~llDfGlar  175 (322)
T KOG1164|consen   99 VMSLLGPSLEDLRKRNPPGRFSRKTVLRIAIQNLNALEDLHSKGFIHRDIKPENFVVGQSSRSEVRTLYLLDFGLAR  175 (322)
T ss_pred             EEeccCccHHHHHHhCCCCCcCHhHHHHHHHHHHHHHHHHHhcCcccCCcCHHHeeecCCCCcccceEEEEecCCCc
Confidence            9987632           34454444444444             448999999999754     469999999999

>cd05119 RIO RIO kinase family, catalytic domain

Probab=99.35  E-value=3.4e-12  Score=100.28  Aligned_cols=116  Identities=19%  Similarity=0.170  Sum_probs=77.3

Q ss_pred             cceeeeeCceEEEEEEECCCcEEEEEEecccChh--HHHH----------------------HHHHHHHHHhCCCCc--c
Q 047066          109 DRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQS--QIEQ----------------------CINKVVVLSQINHRN--V  162 (256)
Q Consensus       109 ~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~--~~~~----------------------~~~E~~~l~~l~h~n--i  162 (256)
                      .+.||+|+||.||+|...+++.||+|..+.....  ....                      ...|...+..+.+..  +
T Consensus         2 ~~~lg~G~~g~Vy~a~~~~~~~vavKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~~~   81 (187)
T cd05119           2 GGPIGTGKEADVYLALDGDGEPVAVKIYRTGRTSFKKRKRYRTGDYRFGRKKSNWRYLSRLWAEKEFRNLKRLYEAGVPV   81 (187)
T ss_pred             CcccccccceeEEEEECCCCCEEEEEEEecCccchhhhhhhhHHHHHhccCCcchhhhhhHHHHHHHHHHHHHHHcCCCC
Confidence            4679999999999999878999999987643211  1111                      134666666664332  3


Q ss_pred             cceeeEEEECCEEEEEEecCCCCC-----CCHH----HHHHHH--------------HHHHhccCCCcEEEcCCCcEEEE
Q 047066          163 VGLLGCCLETEVPLLVNEFVKLPT-----ISWE----VRIRIA--------------AETAEDIKSINILLDDNYTTKVC  219 (256)
Q Consensus       163 v~l~~~~~~~~~~~lv~e~~~~~~-----l~~~----~~~~~~--------------~~i~rdlk~~NiLi~~~~~~ki~  219 (256)
                      .+.++.    ...+++|||++++.     +...    ....++              .-+|+||+|+||+++ ++.++++
T Consensus        82 ~~~~~~----~~~~lv~e~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~lh~~~~ivH~Dl~p~Nili~-~~~~~li  156 (187)
T cd05119          82 PKPIDL----NRHVLVMEFIGGDGIPAPRLKDVRLLEDPEELYDQILELMRKLYREAGLVHGDLSEYNILVD-DGKVYII  156 (187)
T ss_pred             CceEec----CCCEEEEEEeCCCCccChhhhhhhhcccHHHHHHHHHHHHHHHhhccCcCcCCCChhhEEEE-CCcEEEE
Confidence            444432    24689999999843     2211    111111              224579999999999 8899999


Q ss_pred             ecCCceecCC
Q 047066          220 DFGASKLVPI  229 (256)
Q Consensus       220 DFGla~~~~~  229 (256)
                      |||.+.....
T Consensus       157 Dfg~a~~~~~  166 (187)
T cd05119         157 DVPQAVEIDH  166 (187)
T ss_pred             ECcccccccC
Confidence            9999987643

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases present in archaea, bacteria and eukaryotes. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. RIO kinases contain a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. Most organisms contain at least two RIO kinases, RIO1 and RIO2. A third protein, RIO3, is present in multicellular eukaryotes. In yeast, RIO1 and RIO2 are essential for survival. They funct

>TIGR01982 UbiB 2-polyprenylphenol 6-hydroxylase

Probab=99.30  E-value=2.3e-11  Score=107.71  Aligned_cols=120  Identities=18%  Similarity=0.158  Sum_probs=81.0

Q ss_pred             ceeeeeCceEEEEEEECCCcEEEEEEecccChhHHH----------------------------------------HHHH
Q 047066          110 RMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIE----------------------------------------QCIN  149 (256)
Q Consensus       110 ~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~----------------------------------------~~~~  149 (256)
                      +.||.|++|+||+|+.++|+.||||..++.-.....                                        ++.+
T Consensus       123 ~plasaSigQVh~A~l~~G~~VaVKv~rp~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~Eldf~~  202 (437)
T TIGR01982       123 KPLAAASIAQVHRARLVDGKEVAVKVLRPGIEKTIAADIALLYRLARIVERLSPDSRRLRPTEVVKEFEKTLRRELDLRR  202 (437)
T ss_pred             cceeeeehhheEEEEecCCCEEEEEeeCCCcHHHHHHHHHHHHHHHHHHHHhCccccccCHHHHHHHHHHHHHHHHCHHH
Confidence            589999999999999999999999987653211100                                        2344


Q ss_pred             HHHHHHhC----CCCcccceeeEEE-ECCEEEEEEecCCCCCCCHHHHH--------HHH--------HHH------Hhc
Q 047066          150 KVVVLSQI----NHRNVVGLLGCCL-ETEVPLLVNEFVKLPTISWEVRI--------RIA--------AET------AED  202 (256)
Q Consensus       150 E~~~l~~l----~h~niv~l~~~~~-~~~~~~lv~e~~~~~~l~~~~~~--------~~~--------~~i------~rd  202 (256)
                      |+..+.++    +|.+-+.+-..+. .....+++|||+++.++......        .++        .++      |+|
T Consensus       203 Ea~n~~~~~~~~~~~~~v~vP~v~~~~~~~~vLvmE~i~G~~L~~~~~~~~~~~~~~~ia~~~~~~~l~ql~~~g~~H~D  282 (437)
T TIGR01982       203 EAANASELGENFKNDPGVYVPEVYWDRTSERVLTMEWIDGIPLSDIAALDEAGLDRKALAENLARSFLNQVLRDGFFHAD  282 (437)
T ss_pred             HHHHHHHHHHhcCCCCCEEeCCEehhhcCCceEEEEeECCcccccHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCceeCC
Confidence            55554444    2333233322322 24457899999999887543221        121        122      259


Q ss_pred             cCCCcEEEcCCCcEEEEecCCceecCC
Q 047066          203 IKSINILLDDNYTTKVCDFGASKLVPI  229 (256)
Q Consensus       203 lk~~NiLi~~~~~~ki~DFGla~~~~~  229 (256)
                      ++|.||++++++.+++.|||++..++.
T Consensus       283 ~hPgNilv~~~g~i~liDfG~~~~l~~  309 (437)
T TIGR01982       283 LHPGNIFVLKDGKIIALDFGIVGRLSE  309 (437)
T ss_pred             CCcccEEECCCCcEEEEeCCCeeECCH
Confidence            999999999999999999999988753

This model represents the enzyme (UbiB) which catalyzes the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria. It is believed that the reaction is 2-polyprenylphenol - 6-hydroxy-2-polyprenylphenol. This model finds hits primarily in the proteobacteria. The gene is also known as AarF in certain species.

>KOG1167 consensus Serine/threonine protein kinase of the CDC7 subfamily involved in DNA synthesis, repair and recombination [Replication, recombination and repair]

Probab=99.27  E-value=1.7e-12  Score=109.68  Aligned_cols=125  Identities=19%  Similarity=0.312  Sum_probs=98.3

Q ss_pred             HhhcCCCcccceeeeeCceEEEEEEEC----CCcEEEEEEecccChhHHHHHHHHHHHHHhC-CCCcccceeeEEEECCE
Q 047066          100 KIATNNYAYDRMIGRGGYGTVFLGSLS----DNKAIAIKKSRIVYQSQIEQCINKVVVLSQI-NHRNVVGLLGCCLETEV  174 (256)
Q Consensus       100 ~~~~~~~~~~~~lg~G~~g~V~~~~~~----~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~  174 (256)
                      ......|...+.+|+|.|+.||++...    ....||+|.+....  .-.+..+|+++|..+ .+.||+++.+++...+.
T Consensus        32 p~~~~~~~~v~kigeGsFssv~~a~~~~~~~~~~~valk~i~~ts--~p~ri~~El~~L~~~gG~~ni~~~~~~~rnnd~  109 (418)
T KOG1167|consen   32 PFISNAYKVVNKIGEGSFSSVYKATDIEQDTKRRYVALKAIYRTS--SPSRILNELEMLYRLGGSDNIIKLNGCFRNNDQ  109 (418)
T ss_pred             hhhhhhhhhhccccccchhhhhhhhHhhhccccceEeeeeccccc--CchHHHHHHHHHHHhccchhhhcchhhhccCCe
Confidence            344467888899999999999999743    46789999886543  225588999999999 69999999999999999


Q ss_pred             EEEEEecCCCCCC-------CHHHH-------------HHHHHHHHhccCCCcEEEcC-CCcEEEEecCCcee
Q 047066          175 PLLVNEFVKLPTI-------SWEVR-------------IRIAAETAEDIKSINILLDD-NYTTKVCDFGASKL  226 (256)
Q Consensus       175 ~~lv~e~~~~~~l-------~~~~~-------------~~~~~~i~rdlk~~NiLi~~-~~~~ki~DFGla~~  226 (256)
                      ..+|+||+++...       +....             ++....||||+||+|+|.+. .+.-.|.|||+|..
T Consensus       110 v~ivlp~~~H~~f~~l~~~l~~~~i~~Yl~~ll~Al~~~h~~GIvHRDiKpsNFL~n~~t~rg~LvDFgLA~~  182 (418)
T KOG1167|consen  110 VAIVLPYFEHDRFRDLYRSLSLAEIRWYLRNLLKALAHLHKNGIVHRDIKPSNFLYNRRTQRGVLVDFGLAQR  182 (418)
T ss_pred             eEEEecccCccCHHHHHhcCCHHHHHHHHHHHHHHhhhhhccCccccCCCccccccccccCCceEEechhHHH
Confidence            9999999988442       22211             22333567999999999985 46789999999973

>COG0515 SPS1 Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

Probab=99.21  E-value=3.4e-10  Score=94.84  Aligned_cols=137  Identities=31%  Similarity=0.466  Sum_probs=104.6

Q ss_pred             CcccceeeeeCceEEEEEEECCCcEEEEEEecccCh---hHHHHHHHHHHHHHhCCCC-cccceeeEEEECCEEEEEEec
Q 047066          106 YAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQ---SQIEQCINKVVVLSQINHR-NVVGLLGCCLETEVPLLVNEF  181 (256)
Q Consensus       106 ~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~---~~~~~~~~E~~~l~~l~h~-niv~l~~~~~~~~~~~lv~e~  181 (256)
                      |.+.+.||.|+||.||++...  ..+++|.+.....   .....+.+|..+++.+.|+ +++++.+.+......++++++
T Consensus         2 ~~~~~~l~~g~~~~v~~~~~~--~~~~~k~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~   79 (384)
T COG0515           2 YRILRKLGEGSFGEVYLARDR--KLVALKVLAKKLESKSKEVERFLREIQILASLNHPPNIVKLYDFFQDEGSLYLVMEY   79 (384)
T ss_pred             ceeEEeecCCCCeEEEEEEec--cEEEEEeechhhccchhHHHHHHHHHHHHHHccCCcceeeEEEEEecCCEEEEEEec
Confidence            567789999999999999976  7788887755432   1457899999999999887 799999999877778999999


Q ss_pred             CCCCCCC-------------HHHHHHHHH-------------HHHhccCCCcEEEcCCC-cEEEEecCCceecCCCCce-
Q 047066          182 VKLPTIS-------------WEVRIRIAA-------------ETAEDIKSINILLDDNY-TTKVCDFGASKLVPIDETQ-  233 (256)
Q Consensus       182 ~~~~~l~-------------~~~~~~~~~-------------~i~rdlk~~NiLi~~~~-~~ki~DFGla~~~~~~~~~-  233 (256)
                      +.++.+.             ......+..             .++||+||+||+++..+ .++++|||+++........ 
T Consensus        80 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~H~~~~~hrd~kp~nil~~~~~~~~~l~dfg~~~~~~~~~~~~  159 (384)
T COG0515          80 VDGGSLEDLLKKIGRKGPLSESEALFILAQILSALEYLHSKGIIHRDIKPENILLDRDGRVVKLIDFGLAKLLPDPGSTS  159 (384)
T ss_pred             CCCCcHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHHHeeecCCCCeEEEeccCcceecCCCCccc
Confidence            9886553             222222222             23479999999999988 7999999999866544322 


Q ss_pred             ----eeeeeeecccc
Q 047066          234 ----LSTMVQGTLGY  244 (256)
Q Consensus       234 ----~~~~~~Gt~~y  244 (256)
                          ......||..|
T Consensus       160 ~~~~~~~~~~~t~~~  174 (384)
T COG0515         160 SIPALPSTSVGTPGY  174 (384)
T ss_pred             ccccccccccccccc
Confidence                23455689988

>PRK01723 3-deoxy-D-manno-octulosonic-acid kinase; Reviewed

Probab=99.19  E-value=3e-10  Score=92.81  Aligned_cols=118  Identities=17%  Similarity=0.166  Sum_probs=81.8

Q ss_pred             ceee-eeCceEEEEEEECCCcEEEEEEeccc-------------ChhHHHHHHHHHHHHHhCCCCcc--cceeeEEEEC-
Q 047066          110 RMIG-RGGYGTVFLGSLSDNKAIAIKKSRIV-------------YQSQIEQCINKVVVLSQINHRNV--VGLLGCCLET-  172 (256)
Q Consensus       110 ~~lg-~G~~g~V~~~~~~~~~~vavK~~~~~-------------~~~~~~~~~~E~~~l~~l~h~ni--v~l~~~~~~~-  172 (256)
                      ..|| .|+.|.||.+.. .+..+++|.....             .......+.+|+.++..++|+++  +..+++.... 
T Consensus        37 ~~lg~~~g~gtv~~v~~-~~~~~vlk~~~r~~~i~kv~~~~~~~~~~~~~r~~rE~~ll~~L~~~gi~vP~pl~~~~~~~  115 (239)
T PRK01723         37 RVVGSAKGRGTTWFVQT-PGVNWVLRHYRRGGLIGKLSKDRYLFTGLERTRAFAEFRLLAQLYEAGLPVPRPIAARVVRH  115 (239)
T ss_pred             ceeecCCCCccEEEEEe-CCceEEEEEeeEcchHHhhhhhcccccchhhhHHHHHHHHHHHHHhCCCCCceeEeeeeeec
Confidence            4677 788888998887 4677888865321             01223567889999999988775  6667665432 


Q ss_pred             C---EEEEEEecCCC-CCCC---------HHHHHHHHHH---------HHhccCCCcEEEcCCCcEEEEecCCceecC
Q 047066          173 E---VPLLVNEFVKL-PTIS---------WEVRIRIAAE---------TAEDIKSINILLDDNYTTKVCDFGASKLVP  228 (256)
Q Consensus       173 ~---~~~lv~e~~~~-~~l~---------~~~~~~~~~~---------i~rdlk~~NiLi~~~~~~ki~DFGla~~~~  228 (256)
                      .   ..+++||++++ .+|.         ......++..         +|+||||.|||++.++.++|+|||.+....
T Consensus       116 ~~~~~~~lV~e~l~G~~~L~~~l~~~~l~~~~~~~i~~~l~~lH~~GI~HrDlkp~NILv~~~~~v~LIDfg~~~~~~  193 (239)
T PRK01723        116 GLFYRADILIERIEGARDLVALLQEAPLSEEQWQAIGQLIARFHDAGVYHADLNAHNILLDPDGKFWLIDFDRGELRT  193 (239)
T ss_pred             CcceeeeEEEEecCCCCCHHHHHhcCCCCHHHHHHHHHHHHHHHHCCCCCCCCCchhEEEcCCCCEEEEECCCcccCC
Confidence            2   23599999987 4542         2222222222         236999999999999999999999998743

>PRK04750 ubiB putative ubiquinone biosynthesis protein UbiB; Reviewed

Probab=99.18  E-value=3.5e-11  Score=108.18  Aligned_cols=125  Identities=14%  Similarity=0.160  Sum_probs=82.4

Q ss_pred             CCCcccceeeeeCceEEEEEEECC-CcEEEEEEecccChh----------------------------------HHHH--
Q 047066          104 NNYAYDRMIGRGGYGTVFLGSLSD-NKAIAIKKSRIVYQS----------------------------------QIEQ--  146 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~V~~~~~~~-~~~vavK~~~~~~~~----------------------------------~~~~--  146 (256)
                      ..|+. +.+|+|++|+||+|..++ |+.||||..++.-..                                  ..+.  
T Consensus       120 ~~fd~-~PlasaSiaQVh~A~l~~~G~~VAVKV~rP~i~~~I~~Dl~~l~~~a~~l~~~~~~~~~l~~~~~v~e~~~~l~  198 (537)
T PRK04750        120 DDFDI-KPLASASIAQVHFARLKDNGREVVVKVLRPDILPVIDADLALMYRLARWVERLLPDGRRLKPREVVAEFEKTLH  198 (537)
T ss_pred             HhcCh-hhhcCCCccEEEEEEECCCCCEEEEEEeCcchHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHH
Confidence            45665 689999999999999887 999999988643110                                  0111  


Q ss_pred             ----HHHHHHHHHhC----CCCcccceeeEEEE-CCEEEEEEecCCCCCCCHHHHH--------HHH--------HHH--
Q 047066          147 ----CINKVVVLSQI----NHRNVVGLLGCCLE-TEVPLLVNEFVKLPTISWEVRI--------RIA--------AET--  199 (256)
Q Consensus       147 ----~~~E~~~l~~l----~h~niv~l~~~~~~-~~~~~lv~e~~~~~~l~~~~~~--------~~~--------~~i--  199 (256)
                          +.+|+..+.++    .+.+.+.+-..+.+ .....+||||+.|+.++....+        .++        .|+  
T Consensus       199 ~ElD~~~Ea~N~~~~~~~f~~~~~v~VP~v~~d~st~~VLvmE~i~G~~l~d~~~l~~~g~d~~~la~~~v~~~~~Qif~  278 (537)
T PRK04750        199 DELDLMREAANASQLRRNFEDSDMLYVPEVYWDYCSETVMVMERMYGIPVSDVAALRAAGTDMKLLAERGVEVFFTQVFR  278 (537)
T ss_pred             HhhCHHHHHHHHHHHHHHccCCCCeecceeecccCCCceEEEeeecCccHHhHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence                23344333333    23333333333332 4556799999999887543221        111        222  


Q ss_pred             ----HhccCCCcEEEcCCC----cEEEEecCCceecCC
Q 047066          200 ----AEDIKSINILLDDNY----TTKVCDFGASKLVPI  229 (256)
Q Consensus       200 ----~rdlk~~NiLi~~~~----~~ki~DFGla~~~~~  229 (256)
                          |+|++|.||+++.++    .+++.|||+...++.
T Consensus       279 ~GffHaDpHPGNIlv~~~g~~~~~i~llDFGivg~l~~  316 (537)
T PRK04750        279 DGFFHADMHPGNIFVSYDPPENPRYIALDFGIVGSLNK  316 (537)
T ss_pred             CCeeeCCCChHHeEEecCCCCCCeEEEEecceEEECCH
Confidence                259999999999888    999999999988753

>KOG1290 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.14  E-value=1.1e-10  Score=100.63  Aligned_cols=110  Identities=23%  Similarity=0.322  Sum_probs=84.0

Q ss_pred             cCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccChhHHHHHHHHHHHHHhCC-----C---CcccceeeEEEE--
Q 047066          103 TNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVYQSQIEQCINKVVVLSQIN-----H---RNVVGLLGCCLE--  171 (256)
Q Consensus       103 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-----h---~niv~l~~~~~~--  171 (256)
                      ..+|.+.+.||-|.|++||+|... +.+-||+|+.+.. +...+..+.|+.+|+.++     |   ..||+|++.|..  
T Consensus        77 ~gRY~v~rKLGWGHFSTVWLawDtq~~r~VAlKVvKSA-qhYtEaAlDEIklL~~v~~~Dp~~~~~~~VV~LlD~FkhsG  155 (590)
T KOG1290|consen   77 GGRYHVQRKLGWGHFSTVWLAWDTQNKRYVALKVVKSA-QHYTEAALDEIKLLQQVREGDPNDPGKKCVVQLLDHFKHSG  155 (590)
T ss_pred             CceEEEEEeccccccceeEEEeeccCCeEEEEEEEehh-hHHHHHHHHHHHHHHHHHhcCCCCCCCceeeeeeccceecC
Confidence            367899999999999999999964 6778999987643 334477899999999883     2   369999999974  


Q ss_pred             --CCEEEEEEecCCCCCC-----------CHHHHHHHHHHHH--------------hccCCCcEEEcCC
Q 047066          172 --TEVPLLVNEFVKLPTI-----------SWEVRIRIAAETA--------------EDIKSINILLDDN  213 (256)
Q Consensus       172 --~~~~~lv~e~~~~~~l-----------~~~~~~~~~~~i~--------------rdlk~~NiLi~~~  213 (256)
                        +.+++||+|++....|           +......|+.||.              -||||+|||+..+
T Consensus       156 pNG~HVCMVfEvLGdnLLklI~~s~YrGlpl~~VK~I~~qvL~GLdYLH~ecgIIHTDlKPENvLl~~~  224 (590)
T KOG1290|consen  156 PNGQHVCMVFEVLGDNLLKLIKYSNYRGLPLSCVKEICRQVLTGLDYLHRECGIIHTDLKPENVLLCST  224 (590)
T ss_pred             CCCcEEEEEehhhhhHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHhcCccccCCCcceeeeecc
Confidence              4579999999866444           4444445555544              3999999999544

>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.08  E-value=2.7e-10  Score=107.33  Aligned_cols=148  Identities=20%  Similarity=0.277  Sum_probs=99.9

Q ss_pred             cChHHHHhhcCCCcccceeeeeCceEEEEEEECCCcEEEEEEecccChhHHHHHHHHHHHHHhCC---CCcccceeeEEE
Q 047066           94 FTAGELKIATNNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQIN---HRNVVGLLGCCL  170 (256)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~---h~niv~l~~~~~  170 (256)
                      -+..+.++....|.+.+.+|+|+||+||+|...+++.||+|.-++....+   |.-=.+++.+|+   -+.|+.+..+..
T Consensus       688 ~~~~~~~~~~~~~~I~~e~G~g~y~~vy~a~~~~~~~~alK~e~P~~~WE---fYI~~q~~~RLk~~~~~~~~~~~~a~~  764 (974)
T KOG1166|consen  688 NPNTEFEVGGEKFCISKEIGEGSYGSVYVATHSNGKLVALKVEKPPNPWE---FYICLQVMERLKPQMLPSIMHISSAHV  764 (974)
T ss_pred             CccceeeecceeEEEEeeeccccceEEEEeecCCCcEEEEEeecCCCcee---eeehHHHHHhhchhhhcchHHHHHHHc
Confidence            34455667778899999999999999999998789999999876654321   111112222332   345666777777


Q ss_pred             ECCEEEEEEecCCCCCC----------CHHHHHHHHHH-------------HHhccCCCcEEEc-------CCCcEEEEe
Q 047066          171 ETEVPLLVNEFVKLPTI----------SWEVRIRIAAE-------------TAEDIKSINILLD-------DNYTTKVCD  220 (256)
Q Consensus       171 ~~~~~~lv~e~~~~~~l----------~~~~~~~~~~~-------------i~rdlk~~NiLi~-------~~~~~ki~D  220 (256)
                      ..+...+++||.+.|+|          ++...+++..+             ||-||||.|+|+.       ++..++|+|
T Consensus       765 ~~~~S~lv~ey~~~Gtlld~~N~~~~m~e~lv~~~~~qml~ive~lH~~~IIHgDiKPDNfll~~~~~~~~~~~~l~lID  844 (974)
T KOG1166|consen  765 FQNASVLVSEYSPYGTLLDLINTNKVMDEYLVMFFSCQMLRIVEHLHAMGIIHGDIKPDNFLLRREICADSDSKGLYLID  844 (974)
T ss_pred             cCCcceeeeeccccccHHHhhccCCCCCchhhhHHHHHHHHHHHHHHhcceecccCCcceeEeecccCCCCcccceEEEe
Confidence            77888999999999886          33333333333             4459999999993       334799999


Q ss_pred             cCCceecCC-CCceeeeeeeecccc
Q 047066          221 FGASKLVPI-DETQLSTMVQGTLGY  244 (256)
Q Consensus       221 FGla~~~~~-~~~~~~~~~~Gt~~y  244 (256)
                      ||.|-.+.. ++...-...++|-.+
T Consensus       845 fG~siDm~lfp~~~~F~~~~~td~f  869 (974)
T KOG1166|consen  845 FGRSIDMKLFPDGTKFKAVWHTDLF  869 (974)
T ss_pred             cccceeeeEcCCCcEEeeeeccccc
Confidence            999976531 222233445566655

>cd05151 ChoK Choline Kinase (ChoK)

Probab=98.89  E-value=2.2e-08  Score=77.15  Aligned_cols=112  Identities=16%  Similarity=0.090  Sum_probs=78.4

Q ss_pred             ceeeeeCceEEEEEEECCCcEEEEEEecccChhHHHHHHHHHHHHHhCCCCccc-ceeeEEEECCEEEEEEecCCCCCCC
Q 047066          110 RMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVV-GLLGCCLETEVPLLVNEFVKLPTIS  188 (256)
Q Consensus       110 ~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv-~l~~~~~~~~~~~lv~e~~~~~~l~  188 (256)
                      +.++.|.++.||++.. .+..+++|....... ....+.+|+..+..+.+.+++ +++...  ....+++|||+++.++.
T Consensus         4 ~~l~~G~~~~vy~~~~-~~~~~~lK~~~~~~~-~~~~~~~E~~~l~~l~~~~~~P~~~~~~--~~~~~lv~e~i~G~~l~   79 (170)
T cd05151           4 SPLKGGMTNKNYRVEV-ANKKYVVRIPGNGTE-LLINRENEAENSKLAAEAGIGPKLYYFD--PETGVLITEFIEGSELL   79 (170)
T ss_pred             eecCCcccCceEEEEE-CCeEEEEEeCCCCcc-cccCHHHHHHHHHHHHHhCCCCceEEEe--CCCCeEEEEecCCCccc
Confidence            4678899999999987 477899998654322 123467899999988655544 444433  33457999999998875


Q ss_pred             H------HHHHHHHHH--------------HHhccCCCcEEEcCCCcEEEEecCCcee
Q 047066          189 W------EVRIRIAAE--------------TAEDIKSINILLDDNYTTKVCDFGASKL  226 (256)
Q Consensus       189 ~------~~~~~~~~~--------------i~rdlk~~NiLi~~~~~~ki~DFGla~~  226 (256)
                      .      .....++..              +|+|++|.||+++ ++.+++.|||.+..
T Consensus        80 ~~~~~~~~~~~~l~~~l~~LH~~~~~~~~~~HgD~~~~Nil~~-~~~~~liDf~~a~~  136 (170)
T cd05151          80 TEDFSDPENLEKIAKLLKKLHSSPLPDLVPCHNDLLPGNFLLD-DGRLWLIDWEYAGM  136 (170)
T ss_pred             cccccCHHHHHHHHHHHHHHhCCCCCCceeecCCCCcCcEEEE-CCeEEEEecccccC
Confidence            2      111111111              4579999999999 66899999999875

The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC), and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. Bacterial ChoK is also referred to as licA protein. ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major ph

>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]

Probab=98.77  E-value=5.4e-10  Score=99.21  Aligned_cols=129  Identities=22%  Similarity=0.245  Sum_probs=95.0

Q ss_pred             eeeeeCceEEEEEEE----CCCcEEEEEEecccC--hhHHHHHHHHHHHHHhCC-CCcccceeeEEEECCEEEEEEecCC
Q 047066          111 MIGRGGYGTVFLGSL----SDNKAIAIKKSRIVY--QSQIEQCINKVVVLSQIN-HRNVVGLLGCCLETEVPLLVNEFVK  183 (256)
Q Consensus       111 ~lg~G~~g~V~~~~~----~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~-h~niv~l~~~~~~~~~~~lv~e~~~  183 (256)
                      ++|+|+||.|++++.    ..+..+|+|.++...  .........|..++...+ ||.++.+...+..+...++++++..
T Consensus         1 vlg~g~~gkvfLvrk~~g~da~~~yamkvl~k~t~~~~~~~~t~~er~il~~~~~~~f~v~lhyafqt~~kl~l~ld~~r   80 (612)
T KOG0603|consen    1 VLGQGSYGKVFLVRKAGGADAGHLYAMKVLKKATLKVRDRTHTKQERIILAFVHNTPFLVKLHYAFQTDGKLYLILDFLR   80 (612)
T ss_pred             CCCcCCCcchHHHHHhccccccchhhhhcccccccccccccccccHHHHHhhccCCCceeeeeeeeccccchhHhhhhcc
Confidence            478999999998762    236677777654322  112225667888999995 9999999999999999999999998


Q ss_pred             CCCCCHHH-----------H------------HHHHHHHHhccCCCcEEEcCCCcEEEEecCCceecCCCCceeeeeeee
Q 047066          184 LPTISWEV-----------R------------IRIAAETAEDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQG  240 (256)
Q Consensus       184 ~~~l~~~~-----------~------------~~~~~~i~rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~~~~G  240 (256)
                      +|.+....           +            .+-...+.||+|++||+++.+|++|+.|||+++..-..+..     ||
T Consensus        81 gg~lft~l~~~~~f~~~~~~~~~aelaLald~lh~l~iiyrd~k~enilld~~Ghi~~tdfglske~v~~~~~-----cg  155 (612)
T KOG0603|consen   81 GGDLFTRLSKEVMFDELDVAFYLAELALALDHLHKLGIAYRDYKLENVLLLLEGHIKLTDFGLSKEAVKEKIA-----CG  155 (612)
T ss_pred             cchhhhccccCCchHHHHHHHHHHHHHHHHhhcchhHHHHhcccccceeecccCccccCCchhhhHhHhhhhc-----cc
Confidence            87752111           0            11112344899999999999999999999999976433222     78


Q ss_pred             cccc
Q 047066          241 TLGY  244 (256)
Q Consensus       241 t~~y  244 (256)
                      |..|
T Consensus       156 t~ey  159 (612)
T KOG0603|consen  156 TYEY  159 (612)
T ss_pred             chhh
Confidence            9988

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=98.77  E-value=1e-09  Score=88.65  Aligned_cols=115  Identities=14%  Similarity=0.306  Sum_probs=92.7

Q ss_pred             CCCcccceeeeeCceEEEEEEECCCcEEEEEEeccc--ChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEec
Q 047066          104 NNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIV--YQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEF  181 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~  181 (256)
                      .++.+...|.+...|+.|+|+++. ..++.|++...  ...-.++|..|...|+-+.||||+.++|.|..++.+.++..|
T Consensus       190 ~~lnl~tkl~e~hsgelwrgrwqg-ndivakil~vr~~t~risrdfneefp~lrifshpnilpvlgacnsppnlv~isq~  268 (448)
T KOG0195|consen  190 SSLNLITKLAESHSGELWRGRWQG-NDIVAKILNVREVTARISRDFNEEFPALRIFSHPNILPVLGACNSPPNLVIISQY  268 (448)
T ss_pred             hhhhhhhhhccCCCcccccccccC-cchhhhhhhhhhcchhhcchhhhhCcceeeecCCchhhhhhhccCCCCceEeeee
Confidence            345556678889999999999954 44555665432  233346789999999999999999999999999999999999


Q ss_pred             CCCCCC------------CHHHHHHHHHHHHh---------------ccCCCcEEEcCCCcEEEE
Q 047066          182 VKLPTI------------SWEVRIRIAAETAE---------------DIKSINILLDDNYTTKVC  219 (256)
Q Consensus       182 ~~~~~l------------~~~~~~~~~~~i~r---------------dlk~~NiLi~~~~~~ki~  219 (256)
                      |+.|+|            +..+..+.+.++||               -|.++.+++|++.+++|+
T Consensus       269 mp~gslynvlhe~t~vvvd~sqav~faldiargmaflhslep~ipr~~lns~hvmidedltaris  333 (448)
T KOG0195|consen  269 MPFGSLYNVLHEQTSVVVDHSQAVRFALDIARGMAFLHSLEPMIPRFYLNSKHVMIDEDLTARIS  333 (448)
T ss_pred             ccchHHHHHHhcCccEEEecchHHHHHHHHHhhHHHHhhcchhhhhhhcccceEEecchhhhhee
Confidence            999876            45566778888886               788999999999988886

>PLN00181 protein SPA1-RELATED; Provisional

Probab=98.66  E-value=9.4e-09  Score=97.99  Aligned_cols=100  Identities=15%  Similarity=0.168  Sum_probs=61.4

Q ss_pred             CCC-CcccceeeEE-------EECCEEEEEEecCCC----------CCCCHHHHHHHHHHHH-------------hccCC
Q 047066          157 INH-RNVVGLLGCC-------LETEVPLLVNEFVKL----------PTISWEVRIRIAAETA-------------EDIKS  205 (256)
Q Consensus       157 l~h-~niv~l~~~~-------~~~~~~~lv~e~~~~----------~~l~~~~~~~~~~~i~-------------rdlk~  205 (256)
                      ++| +||.+++++|       .....+..++|++..          +.++.....+++.|++             |||||
T Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH~~gIvHrDlKP  108 (793)
T PLN00181         29 LSHIDYVRSLLGSHKEGNLDGLDDDSIVRALECEDVSLRQWLDNPDRSVDAFECFHVFRQIVEIVNAAHSQGIVVHNVRP  108 (793)
T ss_pred             hhHHHHHHHhhcccCCccccccccchhhhhhccCCccHHHHHhcccccccHHHHHHHHHHHHHHHHHHHhCCeeeccCCc
Confidence            344 5666777766       222345666776633          3366666777777666             69999


Q ss_pred             CcEEEcC-------------------CCcEEEEecCCceecCCCC---------------ceeeeeeeecccc----ccc
Q 047066          206 INILLDD-------------------NYTTKVCDFGASKLVPIDE---------------TQLSTMVQGTLGY----YLH  247 (256)
Q Consensus       206 ~NiLi~~-------------------~~~~ki~DFGla~~~~~~~---------------~~~~~~~~Gt~~y----~~~  247 (256)
                      +|||++.                   ++.+|++|||+++......               ........||+.|    ++.
T Consensus       109 ~NiLl~~~~~~k~~d~~~~~~~~~~~~~~~ki~DfG~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~~~  188 (793)
T PLN00181        109 SCFVMSSFNHVSFIESASCSDSGSDEDATTKSREIGSSRREEILSERRIEKLEEVKKQPFPMKQILAMEMSWYTSPEEDN  188 (793)
T ss_pred             hhEEEcccCcEEEeeccccCcccccccCcccccccccccccccccccchhhhhccccCCCcccccccCCCcceEChhhhc
Confidence            9999954                   4456666677665421100               0001123588889    667


Q ss_pred             ccCCCCCCC
Q 047066          248 TSQGTLNKE  256 (256)
Q Consensus       248 ~~~~t~ksD  256 (256)
                      +..++.++|
T Consensus       189 ~~~~~~~sD  197 (793)
T PLN00181        189 GSSSNCASD  197 (793)
T ss_pred             cCCCCchhh
Confidence            778898887

>cd05154 ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 and 11, N-terminal domain, and similar proteins

Probab=98.53  E-value=7.7e-07  Score=71.38  Aligned_cols=78  Identities=15%  Similarity=0.216  Sum_probs=57.9

Q ss_pred             ceeeeeCceEEEEEEECCCcEEEEEEecccCh-hHHHHHHHHHHHHHhCCC--CcccceeeEEEEC---CEEEEEEecCC
Q 047066          110 RMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQ-SQIEQCINKVVVLSQINH--RNVVGLLGCCLET---EVPLLVNEFVK  183 (256)
Q Consensus       110 ~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h--~niv~l~~~~~~~---~~~~lv~e~~~  183 (256)
                      +.++.|..+.+|++...+|..+++|....... .....+..|..+++.+++  .++.+++.+....   +..+++|||++
T Consensus         4 ~~l~~G~~n~~~~v~~~~g~~~ilK~~~~~~~~~~~~~~~~E~~~~~~l~~~~~~vp~~~~~~~~~~~~~~~~~v~e~i~   83 (223)
T cd05154           4 RQLSGGQSNLTYLLTAGGGRRLVLRRPPPGALLPSAHDVAREYRVLRALAGTGVPVPKVLALCEDPSVLGTPFYVMERVD   83 (223)
T ss_pred             eecCCCccceEEEEEecCCcceEEEeCCCcccCcccccHHHHHHHHHHhhCCCCCCCCEEEECCCCCccCCceEEEEEeC
Confidence            46889999999999886668899998654332 134568899999999965  4456777776653   25689999998


Q ss_pred             CCCC
Q 047066          184 LPTI  187 (256)
Q Consensus       184 ~~~l  187 (256)
                      +.++
T Consensus        84 G~~l   87 (223)
T cd05154          84 GRVL   87 (223)
T ss_pred             CEec
Confidence            8554

This subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of bacterial and eukaryotic proteins with similarity to the N-terminal domains of vertebrate ACAD10 and ACAD11. ACADs are a family of flavoproteins that are involved in the beta-oxidation of fatty acyl-CoA derivatives. ACAD deficiency can cause metabolic disorders including muscle fatigue, hypoglycemia, and hepatic lipidosis, among them. There are at least 11 distinct ACADs, some of which show distinct substrate specificities to either straight-chain or branched-chain fatty acids. ACAD10 is widely expressed in human tissues and is highly expressed in liver, kidney, pancreas, and spleen. ACAD10 and ACAD11 contain

>KOG0590 consensus Checkpoint kinase and related serine/threonine protein kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=98.46  E-value=1.5e-07  Score=86.38  Aligned_cols=137  Identities=22%  Similarity=0.259  Sum_probs=88.6

Q ss_pred             cccceeeeeCceEEEEEEEC-CCcEEEEEEec----c-cChhH-HHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEE
Q 047066          107 AYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSR----I-VYQSQ-IEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVN  179 (256)
Q Consensus       107 ~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~----~-~~~~~-~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~  179 (256)
                      ....++|.|++|.|+..... .....+.|..+    . ..... ...+..|..+-..++|||++.....+.......-.|
T Consensus       321 ~~~~~~g~ga~g~~~~~~~~~~~~~~~~~~~r~~~~~~~s~~~~~~~i~sE~~i~~~l~h~~~~e~l~~~~~~~~~~~~m  400 (601)
T KOG0590|consen  321 KPGRVLGSGAYGSVRIAKRRSDLKSFPEKEFRVRVKPTESERKYNYNITSEFCIGSSLSHPNIIETLDIVQEIDGILQSM  400 (601)
T ss_pred             CccceeeecccCceEEEEecCCCccchhhhhhcccCCcccHHHHhhhhhhheeecccccCCchhhhHHHHhhcccchhhh
Confidence            35578999999977766532 23333333211    1 11111 123667888888899999988777766655555559


Q ss_pred             ecCCCCCC----------CHHHHHHHHHH-------------HHhccCCCcEEEcCCCcEEEEecCCceecCCCCc---e
Q 047066          180 EFVKLPTI----------SWEVRIRIAAE-------------TAEDIKSINILLDDNYTTKVCDFGASKLVPIDET---Q  233 (256)
Q Consensus       180 e~~~~~~l----------~~~~~~~~~~~-------------i~rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~---~  233 (256)
                      |||++ .|          .......+..|             .+||+|++|+++..++.+||+|||.+.....+..   .
T Consensus       401 E~~~~-Dlf~~~~~~~~~~~~e~~c~fKqL~~Gv~y~h~~GiahrdlK~enll~~~~g~lki~Dfg~~~vf~~~~e~~~~  479 (601)
T KOG0590|consen  401 EYCPY-DLFSLVMSNGKLTPLEADCFFKQLLRGVKYLHSMGLAHRDLKLENLLVTENGILKIIDFGAASVFRYPWEKNIH  479 (601)
T ss_pred             hcccH-HHHHHHhcccccchhhhhHHHHHHHHHHHHHHhcCceeccCccccEEEecCCceEEeecCcceeeccCcchhhh
Confidence            99988 33          22222222222             2379999999999999999999999976643332   3


Q ss_pred             eeeeeeecccc
Q 047066          234 LSTMVQGTLGY  244 (256)
Q Consensus       234 ~~~~~~Gt~~y  244 (256)
                      .....+|+.+|
T Consensus       480 ~~~g~~gS~pY  490 (601)
T KOG0590|consen  480 ESSGIVGSDPY  490 (601)
T ss_pred             hhcCcccCCcC
Confidence            34556788888

>cd05146 RIO3_euk RIO kinase family; eukaryotic RIO3, catalytic domain

Probab=98.38  E-value=9.5e-06  Score=64.02  Aligned_cols=114  Identities=15%  Similarity=0.077  Sum_probs=74.8

Q ss_pred             ceeeeeCceEEEEEEECC-------CcEEEEEEeccc-------------C---------hhHHHH----HHHHHHHHHh
Q 047066          110 RMIGRGGYGTVFLGSLSD-------NKAIAIKKSRIV-------------Y---------QSQIEQ----CINKVVVLSQ  156 (256)
Q Consensus       110 ~~lg~G~~g~V~~~~~~~-------~~~vavK~~~~~-------------~---------~~~~~~----~~~E~~~l~~  156 (256)
                      .+||+|.-+.||.|...+       +..+|+|.-+..             +         ......    ..+|...|.+
T Consensus         3 g~i~~GKEa~V~~~~~~~~~~~~~~~~~~avKi~r~~~~~Fk~~~~y~~~~~rf~~~~~k~~~~~~~~~wa~kE~r~L~r   82 (197)
T cd05146           3 GCISTGKESVVLHANGGSNETEQVIPTECAIKVFKTTLNEFKNRDKYIKDDYRFKDRFSKLNPRKIIRMWAEKEMHNLKR   82 (197)
T ss_pred             CccccCcceEEEEEecCcccccccCCceEEEEEEeccceeEcChhhhccCCcccccCcCCCCHHHHHHHHHHHHHHHHHH
Confidence            478999999999998543       478999953210             0         011222    3479999999


Q ss_pred             CC--CCcccceeeEEEECCEEEEEEecCCCCCC----------CHHHH-------H-------HHHHHHHhccCCCcEEE
Q 047066          157 IN--HRNVVGLLGCCLETEVPLLVNEFVKLPTI----------SWEVR-------I-------RIAAETAEDIKSINILL  210 (256)
Q Consensus       157 l~--h~niv~l~~~~~~~~~~~lv~e~~~~~~l----------~~~~~-------~-------~~~~~i~rdlk~~NiLi  210 (256)
                      +.  .-++..++++    ..-+++|||+.++.+          +....       +       +-+.-+|.||++.|||+
T Consensus        83 l~~~Gv~vP~pi~~----~~~~lvME~Ig~~~~~~~~Lkd~~~~~~~~~~i~~~i~~~l~~l~H~~glVHGDLs~~NIL~  158 (197)
T cd05146          83 MQKAGIPCPEVVVL----KKHVLVMSFIGDDQVPAPKLKDAKLNDEEMKNAYYQVLSMMKQLYKECNLVHADLSEYNMLW  158 (197)
T ss_pred             HHHcCCCCCeEEEe----cCCEEEEEEcCCCCccchhhhccccCHHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEE
Confidence            84  3566666654    456789999986422          11111       1       11122336999999999


Q ss_pred             cCCCcEEEEecCCceecC
Q 047066          211 DDNYTTKVCDFGASKLVP  228 (256)
Q Consensus       211 ~~~~~~ki~DFGla~~~~  228 (256)
                      ++ +.+.|+|||.|....
T Consensus       159 ~~-~~v~iIDF~qav~~~  175 (197)
T cd05146         159 HD-GKVWFIDVSQSVEPT  175 (197)
T ss_pred             EC-CcEEEEECCCceeCC
Confidence            74 689999999988764

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO3 is present only in multicellular eukaryotes. Its function is still unknown.

>COG3642 Mn2+-dependent serine/threonine protein kinase [Signal transduction mechanisms]

Probab=98.36  E-value=4.5e-06  Score=64.44  Aligned_cols=116  Identities=16%  Similarity=0.231  Sum_probs=79.6

Q ss_pred             ceeeeeCceEEEEEEECCCcEEEEEE-ecccC--h-----hHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEec
Q 047066          110 RMIGRGGYGTVFLGSLSDNKAIAIKK-SRIVY--Q-----SQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEF  181 (256)
Q Consensus       110 ~~lg~G~~g~V~~~~~~~~~~vavK~-~~~~~--~-----~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~  181 (256)
                      ..+++|+-+.++.+.+ -|.++.+|. ++...  +     -..++..+|+.++.+++--.|.-..=+..+++.-.|+|||
T Consensus         2 ~~i~~GAEa~i~~~~~-~g~~av~K~Ri~K~YR~p~LD~klrr~Rt~~Earil~~a~~~GV~~P~v~dvD~~~~~I~me~   80 (204)
T COG3642           2 DLIKQGAEAIIYLTDF-LGLPAVVKERIPKRYRHPELDEKLRRERTRREARILAKAREAGVPVPIVYDVDPDNGLIVMEY   80 (204)
T ss_pred             chhhCCcceeEEeeec-cCcceEEEeecCcccCChHHHHHHHHHHHHHHHHHHHHHHHcCCCCCeEEEEcCCCCEEEEEE
Confidence            3577899999999977 344466663 22221  1     1124578899999998765665555566677778899999


Q ss_pred             CCCCCCCHHH-------H---------HHHHHHHHhccCCCcEEEcCCCcEEEEecCCceec
Q 047066          182 VKLPTISWEV-------R---------IRIAAETAEDIKSINILLDDNYTTKVCDFGASKLV  227 (256)
Q Consensus       182 ~~~~~l~~~~-------~---------~~~~~~i~rdlk~~NiLi~~~~~~ki~DFGla~~~  227 (256)
                      .++..+....       .         +|.+..+|-||.++|++++... +.++||||+..-
T Consensus        81 I~G~~lkd~l~~~~~~~~r~vG~~vg~lH~~givHGDLTtsNiIl~~~~-i~~IDfGLg~~s  141 (204)
T COG3642          81 IEGELLKDALEEARPDLLREVGRLVGKLHKAGIVHGDLTTSNIILSGGR-IYFIDFGLGEFS  141 (204)
T ss_pred             eCChhHHHHHHhcchHHHHHHHHHHHHHHhcCeecCCCccceEEEeCCc-EEEEECCccccc
Confidence            9997764221       1         2222233459999999998775 899999999863

>KOG3087 consensus Serine/threonine protein kinase [General function prediction only]

Probab=98.30  E-value=8.9e-06  Score=62.75  Aligned_cols=119  Identities=22%  Similarity=0.210  Sum_probs=79.8

Q ss_pred             ccceeeeeCceEEEEEEECCCcEEEEEEec-ccC-------hhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEE
Q 047066          108 YDRMIGRGGYGTVFLGSLSDNKAIAIKKSR-IVY-------QSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVN  179 (256)
Q Consensus       108 ~~~~lg~G~~g~V~~~~~~~~~~vavK~~~-~~~-------~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~  179 (256)
                      ...++-+|+-+.|+++.+ .|+...||.-. ...       +-...+..+|+.+|.+++--.|.-..=++.+...-.+.|
T Consensus        11 ~l~likQGAEArv~~~~~-~Ge~~iIK~Rf~K~YRHP~LD~kLtr~Rt~~Ear~l~k~~~~GI~~P~l~~~D~~~~~i~M   89 (229)
T KOG3087|consen   11 SLELIKQGAEARVPRGSF-SGEAAIIKERFSKRYRHPALDQKLTRKRTKQEARLLAKCRALGIPAPRLIFIDTYGGQIYM   89 (229)
T ss_pred             cceeeeccceeeEeeecc-CCceeEEeecccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEecCCCeEEE
Confidence            446888999999999998 67777777421 111       122356788999999987556655555666666677889


Q ss_pred             ecCCCCCC--------------CH---HHHHHHHHHH---------HhccCCCcEEEcCCC---cEEEEecCCceec
Q 047066          180 EFVKLPTI--------------SW---EVRIRIAAET---------AEDIKSINILLDDNY---TTKVCDFGASKLV  227 (256)
Q Consensus       180 e~~~~~~l--------------~~---~~~~~~~~~i---------~rdlk~~NiLi~~~~---~~ki~DFGla~~~  227 (256)
                      ||.++.+.              +.   .....+..++         |-||..+||++..++   .+.+.|||++..-
T Consensus        90 E~~~g~~~vk~~i~~~~~~~~~d~~~~~~~~~iG~~igklH~ndiiHGDLTTSNill~~~~~~~~~~lIdfgls~~s  166 (229)
T KOG3087|consen   90 EFIDGASTVKDFILSTMEDESEDEGLAELARRIGELIGKLHDNDIIHGDLTTSNILLRSDGNQITPILIDFGLSSVS  166 (229)
T ss_pred             EeccchhHHHHHHHHHccCcccchhHHHHHHHHHHHHHHhhhCCeecccccccceEEecCCCcCceEEEeecchhcc
Confidence            99977221              11   1112222223         349999999997655   4689999998754

>COG0661 AarF Predicted unusual protein kinase [General function prediction only]

Probab=98.11  E-value=1.1e-05  Score=72.50  Aligned_cols=120  Identities=18%  Similarity=0.129  Sum_probs=78.1

Q ss_pred             ceeeeeCceEEEEEEECCCcEEEEEEecccChhHH------------------------------H----------HHHH
Q 047066          110 RMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQI------------------------------E----------QCIN  149 (256)
Q Consensus       110 ~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~------------------------------~----------~~~~  149 (256)
                      +.++.++-|+||+|.+++|+.||||..++.-....                              +          ++.+
T Consensus       131 ~PiAsASIaQVH~A~L~sG~~VAVKVqrPgi~~~i~~DL~il~~~a~~~~~~~~~~~~l~~~~vv~e~~~~l~~ElDy~~  210 (517)
T COG0661         131 EPIASASIAQVHRAVLKSGEEVAVKVQRPGIRERIEADLKLLRRLARLIKRLPPGGRRLDLVEVVDEFEKRLREELDYRR  210 (517)
T ss_pred             CchhhhhHhhheeEEecCCCEEEEEecCCChHHHHHHHHHHHHHHHHHHHHcCCccccCChHHHHHHHHHHHHHHhCHHH
Confidence            58899999999999999999999997765221110                              0          1233


Q ss_pred             HHHHHHhC----C-CCcccceeeEEEECCEEEEEEecCCCCCCCHHHHH--------HHH--------HHHH------hc
Q 047066          150 KVVVLSQI----N-HRNVVGLLGCCLETEVPLLVNEFVKLPTISWEVRI--------RIA--------AETA------ED  202 (256)
Q Consensus       150 E~~~l~~l----~-h~niv~l~~~~~~~~~~~lv~e~~~~~~l~~~~~~--------~~~--------~~i~------rd  202 (256)
                      |+.-+.++    + .+++.-..=++...+.-.++|||++|-.++....+        .++        .|+.      .|
T Consensus       211 EA~n~~~~~~nf~~~~~v~VP~V~we~t~~~VLtmE~i~Gi~i~d~~~l~~~g~d~k~ia~~~~~~f~~q~~~dgffHaD  290 (517)
T COG0661         211 EAANAERFRENFKDDPDVYVPKVYWEYTTRRVLTMEWIDGIKISDIAALKSAGIDRKELAELLVRAFLRQLLRDGFFHAD  290 (517)
T ss_pred             HHHHHHHHHHHcCCCCCeEeceeehhccCCcEEEEEeeCCEecccHHHHHhcCCCHHHHHHHHHHHHHHHHHhcCccccC
Confidence            44433333    2 33332222233345667899999999555433221        111        2222      39


Q ss_pred             cCCCcEEEcCCCcEEEEecCCceecCC
Q 047066          203 IKSINILLDDNYTTKVCDFGASKLVPI  229 (256)
Q Consensus       203 lk~~NiLi~~~~~~ki~DFGla~~~~~  229 (256)
                      .+|.||+++.++...+.|||+...++.
T Consensus       291 pHpGNi~v~~~g~i~~lDfGi~g~l~~  317 (517)
T COG0661         291 PHPGNILVRSDGRIVLLDFGIVGRLDP  317 (517)
T ss_pred             CCccceEEecCCcEEEEcCcceecCCH
Confidence            999999999999999999999887653

>PF01163 RIO1: RIO1 family; InterPro: IPR018934 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=98.00  E-value=9.5e-05  Score=58.04  Aligned_cols=106  Identities=20%  Similarity=0.212  Sum_probs=63.3

Q ss_pred             EEEEEEECCCcEEEEEEeccc--------------Ch------------hHHHHHHHHHHHHHhCCCC--cccceeeEEE
Q 047066          119 TVFLGSLSDNKAIAIKKSRIV--------------YQ------------SQIEQCINKVVVLSQINHR--NVVGLLGCCL  170 (256)
Q Consensus       119 ~V~~~~~~~~~~vavK~~~~~--------------~~------------~~~~~~~~E~~~l~~l~h~--niv~l~~~~~  170 (256)
                      .||.|...++..+|+|.-+..              ..            .......+|...|.++...  ++.+++++  
T Consensus         1 ~Vy~~~~~~~~~~a~K~~r~~~~~Fk~~~~y~~~~~r~~~~~~~~~~~~~~~~~~~~E~~~L~~l~~~Gv~vP~p~~~--   78 (188)
T PF01163_consen    1 DVYHAIDPDGEEVAVKIYRTGRTSFKRRKKYRDYDYRFKKYRHKSSWRYLIREWAKKEFRNLKRLYEAGVPVPKPYDY--   78 (188)
T ss_dssp             EEEEEEECTTEEEEEEEE-S---SS-HHHHHTTTSTTSTTC--G--CHHHHHHHHHHHHHHHHHCCCTT-SS--EEEE--
T ss_pred             CEEEEECCCCCEEEEEEeccCceEEEEeeeeecccchhcccccccCHHHHHHHHHHHHHHHHHHHHHCCccCCcEEEE--
Confidence            489999888999999954321              00            0123567899999999755  45666543  


Q ss_pred             ECCEEEEEEecCC--CCCCCH-----------HHH-HHHHH----------HHHhccCCCcEEEcCCCcEEEEecCCcee
Q 047066          171 ETEVPLLVNEFVK--LPTISW-----------EVR-IRIAA----------ETAEDIKSINILLDDNYTTKVCDFGASKL  226 (256)
Q Consensus       171 ~~~~~~lv~e~~~--~~~l~~-----------~~~-~~~~~----------~i~rdlk~~NiLi~~~~~~ki~DFGla~~  226 (256)
                      ..  -.+||||++  +..++.           ... ..+..          .+|.||.+.|||++++ .+.|+|||.|..
T Consensus        79 ~~--~~ivME~I~~~G~~~~~l~~~~~~~~~~~~~~~~il~~~~~~~~~~givHGDLs~~NIlv~~~-~~~iIDf~qav~  155 (188)
T PF01163_consen   79 NR--NVIVMEYIGEDGVPLPRLKDVDLSPEEPKELLEEILEEIIKMLHKAGIVHGDLSEYNILVDDG-KVYIIDFGQAVD  155 (188)
T ss_dssp             ET--TEEEEE--EETTEEGGCHHHCGGGGSTHHHHHHHHHHHHHHHHHCTTEEESS-STTSEEEETT-CEEE--GTTEEE
T ss_pred             eC--CEEEEEecCCCccchhhHHhccccchhHHHHHHHHHHHHHHHHHhcCceecCCChhhEEeecc-eEEEEecCccee
Confidence            22  369999998  533211           111 11111          1224999999999988 999999999987


Q ss_pred             cCC
Q 047066          227 VPI  229 (256)
Q Consensus       227 ~~~  229 (256)
                      ...
T Consensus       156 ~~~  158 (188)
T PF01163_consen  156 SSH  158 (188)
T ss_dssp             TTS
T ss_pred             cCC
Confidence            653

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents RIO kinase, they exhibit little sequence similarity with eukaryotic protein kinases, and are classified as atypical protein kinases []. The conformation of ATP when bound to the RIO kinases is unique when compared with ePKs, such as serine/threonine kinases or the insulin receptor tyrosine kinase, suggesting that the detailed mechanism by which the catalytic aspartate of RIO kinases participates in phosphoryl transfer may not be identical to that employed in known serine/threonine ePKs. Representatives of the RIO family are present in organisms varying from Archaea to humans, although the RIO3 proteins have only been identified in multicellular eukaryotes, to date. Yeast Rio1 and Rio2 proteins are required for proper cell cycle progression and chromosome maintenance, and are necessary for survival of the cells. These proteins are involved in the processing of 20 S pre-rRNA via late 18 S rRNA processing. ; GO: 0003824 catalytic activity, 0005524 ATP binding; PDB: 1TQP_A 1ZAR_A 1TQI_A 1ZAO_A 1TQM_A 3RE4_A 1ZTH_B 1ZP9_A 1ZTF_A.

>KOG0590 consensus Checkpoint kinase and related serine/threonine protein kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=98.00  E-value=7.1e-07  Score=82.05  Aligned_cols=143  Identities=22%  Similarity=0.263  Sum_probs=102.6

Q ss_pred             hcCCCcccceeeeeCceEEEEEEEC--CCcEEEEEEecccC--hhHHHHHHHHHHHHHhCC-CCcccceeeEEEECCEEE
Q 047066          102 ATNNYAYDRMIGRGGYGTVFLGSLS--DNKAIAIKKSRIVY--QSQIEQCINKVVVLSQIN-HRNVVGLLGCCLETEVPL  176 (256)
Q Consensus       102 ~~~~~~~~~~lg~G~~g~V~~~~~~--~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~-h~niv~l~~~~~~~~~~~  176 (256)
                      +...|.+.+.||+|+|+.|-.....  ....+|+|.+....  .....+...|..+=..+. |+|++++++.....+..+
T Consensus        18 ~~~~~~~~~~ig~gs~~~~~~~~~~~~~~~~~a~~~~s~~~~~~~~~~~i~~e~~~~~~~s~h~n~~~~~~~~~~~~~~~   97 (601)
T KOG0590|consen   18 PNSQYKLSRSIGKGSFSSSALASNSRDPESSSATKPISIPPKSEDSSEHIDTETDIQKKLSKHSNTVHMIEPSSSPRSYL   97 (601)
T ss_pred             ccccccccccccccccchhhhhhhcCCCcceeeccCCCCCCCccchhhhcCccccccccccccccccccCCccCCCcccc
Confidence            3467788888999999998887653  34456666554332  333455566777777775 999999999999999999


Q ss_pred             EEEecCCCCCCCHHH------------H----------HHHH----HHHHhccCCCcEEEcCCC-cEEEEecCCceecCC
Q 047066          177 LVNEFVKLPTISWEV------------R----------IRIA----AETAEDIKSINILLDDNY-TTKVCDFGASKLVPI  229 (256)
Q Consensus       177 lv~e~~~~~~l~~~~------------~----------~~~~----~~i~rdlk~~NiLi~~~~-~~ki~DFGla~~~~~  229 (256)
                      +.+||..++.+....            .          +...    .-.++|+||+|.+++..+ ..|++|||+|..+..
T Consensus        98 ~~~~~s~g~~~f~~i~~~~~~~~~~~~~~~~~~ql~s~l~~~H~~~~~~h~~ikP~n~~l~~s~~~l~~~df~~At~~~~  177 (601)
T KOG0590|consen   98 LSLSYSDGGSLFSKISHPDSTGTSSSSASRYLPQLNSGLSYLHPENGVTHRDIKPSNSLLDESGSALKIADFGLATAYRN  177 (601)
T ss_pred             cccCcccccccccccccCCccCCCCcchhhhhhhhccCccccCcccccccCCCCCccchhccCCCcccCCCchhhccccc
Confidence            999998775542211            0          1111    123479999999999999 999999999988765


Q ss_pred             -C-Cceeeeeeee-cccc
Q 047066          230 -D-ETQLSTMVQG-TLGY  244 (256)
Q Consensus       230 -~-~~~~~~~~~G-t~~y  244 (256)
                       + ........+| ++.|
T Consensus       178 ~~g~~~~~~~~~g~s~~y  195 (601)
T KOG0590|consen  178 KNGAERSLKDRCGSSPPY  195 (601)
T ss_pred             cCCcceeeecccCCCCCC
Confidence             2 3333345678 8888

>KOG0606 consensus Microtubule-associated serine/threonine kinase and related proteins [Signal transduction mechanisms; General function prediction only]

Probab=97.96  E-value=1.6e-06  Score=81.73  Aligned_cols=121  Identities=23%  Similarity=0.320  Sum_probs=77.0

Q ss_pred             CCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEecC
Q 047066          104 NNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEFV  182 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~  182 (256)
                      .+|...+++..|++|.||.++++ ..+.+|+|+-+...      +++-  ++....+|.+|   |-|..         .+
T Consensus        83 ~df~~IklisngAygavylvrh~~trqrfa~kiNkq~l------ilRn--ilt~a~npfvv---gDc~t---------ll  142 (1205)
T KOG0606|consen   83 SDFNTIKLISNGAYGAVYLVRHKETRQRFAMKINKQNL------ILRN--ILTFAGNPFVV---GDCAT---------LL  142 (1205)
T ss_pred             cccceeEeeccCCCCceeeeeccccccchhhcccccch------hhhc--cccccCCccee---chhhh---------hc
Confidence            57888899999999999999986 46678885322110      1111  44444566665   22211         01


Q ss_pred             CC-CCCC-----HHHHHHHHHHHHhccCCCcEEEcCCCcEEEEecCCceecCCC--------------Cceeeeeeeecc
Q 047066          183 KL-PTIS-----WEVRIRIAAETAEDIKSINILLDDNYTTKVCDFGASKLVPID--------------ETQLSTMVQGTL  242 (256)
Q Consensus       183 ~~-~~l~-----~~~~~~~~~~i~rdlk~~NiLi~~~~~~ki~DFGla~~~~~~--------------~~~~~~~~~Gt~  242 (256)
                      ++ |.++     ....++--.+++||+||.|.||+.-|++|++|||+++.-...              .......++|||
T Consensus       143 k~~g~lPvdmvla~Eylh~ygivhrdlkpdnllIT~mGhiKlTDfgLsk~GLms~atnl~eg~I~k~t~Ef~dKqvcgTP  222 (1205)
T KOG0606|consen  143 KNIGPLPVDMVLAVEYLHSYGIVHRDLKPDNLLITSMGHIKLTDFGLSKKGLMSLATNLKEGHIEKDTHEFQDKQVCGTP  222 (1205)
T ss_pred             ccCCCCcchhhHHhHhhccCCeecCCCCCCcceeeecccccccchhhhhhhhhhccchhhhcchHHHHHHhhhccccCCc
Confidence            11 2222     223344455788999999999999999999999998753110              111234579999


Q ss_pred             cc
Q 047066          243 GY  244 (256)
Q Consensus       243 ~y  244 (256)
                      .|
T Consensus       223 ey  224 (1205)
T KOG0606|consen  223 EY  224 (1205)
T ss_pred             cc
Confidence            99

>KOG1033 consensus eIF-2alpha kinase PEK/EIF2AK3 [Translation, ribosomal structure and biogenesis]

Probab=97.95  E-value=1.7e-06  Score=75.88  Aligned_cols=83  Identities=23%  Similarity=0.270  Sum_probs=63.3

Q ss_pred             EEEEEEecCCCCCCC-------------HHHHHHHHHHH----------HhccCCCcEEEcCCCcEEEEecCCceecCCC
Q 047066          174 VPLLVNEFVKLPTIS-------------WEVRIRIAAET----------AEDIKSINILLDDNYTTKVCDFGASKLVPID  230 (256)
Q Consensus       174 ~~~lv~e~~~~~~l~-------------~~~~~~~~~~i----------~rdlk~~NiLi~~~~~~ki~DFGla~~~~~~  230 (256)
                      .++|.|++|...+|.             +...+.+..|+          +||+||.||....+..+||.|||+.......
T Consensus       330 ~lyI~Mn~c~~~tledWl~rr~~~e~~s~s~~~~~~~q~~~~~~yk~~ihrdlkp~nif~~~d~q~kIgDFgl~ts~~~~  409 (516)
T KOG1033|consen  330 YLYIQMNLCEKETLEDWLRRRRTGEERSLSLMLDIFKQIAPAVEYKGLIHRDLKPSNIFFSDDDQLKIGDFGLVTSQDKD  409 (516)
T ss_pred             chhhhhhhhhhhhHHHHhhCCCcccccchhHHHHHHHhhccchhhccchhhhccccccccccchhhhhhhhhheeecccC
Confidence            578899998776653             23334555554          4799999999999999999999999876544


Q ss_pred             C-----ceeeeeeeecccc----cccccCCCCCCC
Q 047066          231 E-----TQLSTMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       231 ~-----~~~~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      .     ....+.-.||.+|    .+.+.+|+.|+|
T Consensus       410 ~~~~~~~a~~t~~~gt~~YmsPEQi~g~~y~~kvd  444 (516)
T KOG1033|consen  410 ETVAPAAASHTQQVGTLLYMSPEQIRGQQYSEKVD  444 (516)
T ss_pred             CcccchhhhhhhcccccccCCHHHHhhhhhhhhcc
Confidence            4     2234556799999    888999999987

>COG0478 RIO-like serine/threonine protein kinase fused to N-terminal HTH domain [Signal transduction mechanisms]

Probab=97.80  E-value=0.00025  Score=58.15  Aligned_cols=118  Identities=17%  Similarity=0.181  Sum_probs=82.8

Q ss_pred             CcccceeeeeCceEEEEEEECCCcEEEEEEeccc----------C--------hh----HHHHHHHHHHHHHhCCCC--c
Q 047066          106 YAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIV----------Y--------QS----QIEQCINKVVVLSQINHR--N  161 (256)
Q Consensus       106 ~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~----------~--------~~----~~~~~~~E~~~l~~l~h~--n  161 (256)
                      ..+...||.|.-+.||.|..+.|.++++|.-+..          .        .+    .+....+|.+.|..|...  .
T Consensus        93 e~iG~~IGvGKEsdVY~~~~~~g~~~~vKfHR~GrtsFrkvk~~R~y~~~~~h~sWl~~sRl~A~rEf~~L~~L~~~G~~  172 (304)
T COG0478          93 EAIGTKIGVGKESDVYVAIDPKGRKVAVKFHRLGRTSFRKVKRNRDYLADKEHGSWLYVSRLAAEREFEALQRLYPEGVK  172 (304)
T ss_pred             HhhccccccCccceEEEEECCCCCEEEEEEeecCchhhhhhcchhhhhccccCcchhhhHHHHHHHHHHHHHHhhhcCCC
Confidence            4566899999999999999988999999943210          0        00    123467899999999644  6


Q ss_pred             ccceeeEEEECCEEEEEEecCCCCCCCHHH--------HH-HH---------HHHHHhccCCCcEEEcCCCcEEEEecCC
Q 047066          162 VVGLLGCCLETEVPLLVNEFVKLPTISWEV--------RI-RI---------AAETAEDIKSINILLDDNYTTKVCDFGA  223 (256)
Q Consensus       162 iv~l~~~~~~~~~~~lv~e~~~~~~l~~~~--------~~-~~---------~~~i~rdlk~~NiLi~~~~~~ki~DFGl  223 (256)
                      +.+.+++    +.-.+|||+.++-.|....        .+ .+         ..-+|.|+++=||+++++|.+.++||=-
T Consensus       173 VP~P~~~----nRHaVvMe~ieG~eL~~~r~~~en~~~il~~il~~~~~~~~~GiVHGDlSefNIlV~~dg~~~vIDwPQ  248 (304)
T COG0478         173 VPKPIAW----NRHAVVMEYIEGVELYRLRLDVENPDEILDKILEEVRKAYRRGIVHGDLSEFNILVTEDGDIVVIDWPQ  248 (304)
T ss_pred             CCCcccc----ccceeeeehcccceeecccCcccCHHHHHHHHHHHHHHHHHcCccccCCchheEEEecCCCEEEEeCcc
Confidence            7776654    4457899999885542111        11 11         1224469999999999999999999966


Q ss_pred             ceec
Q 047066          224 SKLV  227 (256)
Q Consensus       224 a~~~  227 (256)
                      +...
T Consensus       249 ~v~~  252 (304)
T COG0478         249 AVPI  252 (304)
T ss_pred             cccC
Confidence            6543

>PF14531 Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_A 3Q5Z_A 3Q60_A

Probab=97.78  E-value=0.00017  Score=60.21  Aligned_cols=123  Identities=20%  Similarity=0.246  Sum_probs=66.9

Q ss_pred             CCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC---hhHHHHHHHHHHHHHhCC----------CCcccceeeEEE
Q 047066          105 NYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY---QSQIEQCINKVVVLSQIN----------HRNVVGLLGCCL  170 (256)
Q Consensus       105 ~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~----------h~niv~l~~~~~  170 (256)
                      .+...+.||.|+++.||.+.+. +++++|+|......   ....+++.+|.-....+.          |-.++-.++...
T Consensus        13 ~l~~~~~i~~g~~~~v~~v~d~~t~~~~avkvf~~~~~~~~~~~~~~~~e~l~~~~~~~~~~p~~a~~~~r~l~P~d~~~   92 (288)
T PF14531_consen   13 TLVRGRIIGKGGFSIVFEVTDVETGEEFAVKVFLLPADASANEYEQLKEEQLAITLFPGVKNPKEAYRHLRFLVPLDLLR   92 (288)
T ss_dssp             EEEEEEEEEEETTEEEEEEEETTTTEEEEEEEEEESSTTHTTHHHHHHHHHHGGGGSTT--SHHHHHHHH-B---SEEEE
T ss_pred             EEEEccccccCCceEEEEEEEccCCceEEEEEEecccccchHHHHHHHHHHHHhhhhccCCCHHHHHHhceEEeeeEEEE
Confidence            4566689999999999999986 58999999753222   334566666665444432          222333333222


Q ss_pred             ---------ECC--------EEEEEEecCCCCC----------------CCHHHHHHHHHHHH-------------hccC
Q 047066          171 ---------ETE--------VPLLVNEFVKLPT----------------ISWEVRIRIAAETA-------------EDIK  204 (256)
Q Consensus       171 ---------~~~--------~~~lv~e~~~~~~----------------l~~~~~~~~~~~i~-------------rdlk  204 (256)
                               ...        ..+++|+-+....                +...-++.+..|+.             .||+
T Consensus        93 i~~~~~~~~~~~~~~~~~v~n~~~l~P~~~~dL~~~~~~l~~~~~~~~~l~~~arl~lT~Q~I~lvA~Lh~~GlVHgdi~  172 (288)
T PF14531_consen   93 IPGKPPFFERGPGQSIYWVLNRFLLMPRAQGDLQDLVEALFSRAQTHSPLAFAARLSLTVQMIRLVANLHSYGLVHGDIK  172 (288)
T ss_dssp             ETTS-SEEEECETTEEEEEESEEEEEE--SEEHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHHTTEEEST-S
T ss_pred             EcCCCcceecCCCCccceeehhhhccchhhhcHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHhhcceEecccc
Confidence                     111        1244555443311                11111222222222             3999


Q ss_pred             CCcEEEcCCCcEEEEecCCceec
Q 047066          205 SINILLDDNYTTKVCDFGASKLV  227 (256)
Q Consensus       205 ~~NiLi~~~~~~ki~DFGla~~~  227 (256)
                      |+|++++++|.+.|+||+.....
T Consensus       173 ~~nfll~~~G~v~Lg~F~~~~r~  195 (288)
T PF14531_consen  173 PENFLLDQDGGVFLGDFSSLVRA  195 (288)
T ss_dssp             GGGEEE-TTS-EEE--GGGEEET
T ss_pred             eeeEEEcCCCCEEEcChHHHeec
Confidence            99999999999999999887654

>TIGR02172 Fb_sc_TIGR02172 Fibrobacter succinogenes paralogous family TIGR02172

Probab=97.78  E-value=0.00041  Score=56.23  Aligned_cols=72  Identities=11%  Similarity=0.045  Sum_probs=52.3

Q ss_pred             ceeeeeCceEEEEEEECCCcEEEEEEecccChhHHHHHHHHHHHHHhCCCC--cccceeeEEEECCEEEEEEecCCCCC
Q 047066          110 RMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHR--NVVGLLGCCLETEVPLLVNEFVKLPT  186 (256)
Q Consensus       110 ~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~--niv~l~~~~~~~~~~~lv~e~~~~~~  186 (256)
                      ..+|.|..+.||+.   .+..+++|......  ......+|.++++.+..-  .+.+.+++....+...++||+++|..
T Consensus         7 ~~i~~G~t~~~y~~---~~~~~VlR~~~~~~--~~~~i~~E~~~l~~l~~~glpvP~~~~~~~~~~~~glv~e~i~G~~   80 (226)
T TIGR02172         7 TQTGEGGNGESYTH---KTGKWMLKLYNPGF--DKETIKREFDASRKVFSLGIPTPHPFDLVEDGGRLGLIYELIVGKR   80 (226)
T ss_pred             eeecCCCCcceeEe---cCCCEEEEeCCCCC--CHHHHHHHHHHHHHHHHcCCCCCceEEEEecCCeeeeeeeecCCcc
Confidence            47899999999974   24456777665432  224467899999888533  35677888777777889999999963

This model describes a paralogous family of five proteins, likely to be enzymes, in the rumen bacterium Fibrobacter succinogenes S85. Members show homology to proteins described by PFAM model pfam01636, a phosphotransferase enzyme family associated with resistance to aminoglycoside antibiotics. However, members of this family score below the current trusted and noise cutoffs for pfam01636.

>KOG0601 consensus Cyclin-dependent kinase WEE1 [Cell cycle control, cell division, chromosome partitioning]

Probab=97.78  E-value=7.4e-06  Score=72.96  Aligned_cols=152  Identities=20%  Similarity=0.266  Sum_probs=103.1

Q ss_pred             CCcccceeee--eCceEEEEEEE--C-CCcEEEEEEeccc--ChhHHHHHHHHHHHHHhC-CCCcccceeeEEEECCEEE
Q 047066          105 NYAYDRMIGR--GGYGTVFLGSL--S-DNKAIAIKKSRIV--YQSQIEQCINKVVVLSQI-NHRNVVGLLGCCLETEVPL  176 (256)
Q Consensus       105 ~~~~~~~lg~--G~~g~V~~~~~--~-~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~  176 (256)
                      .+...+.+|.  |.+|.+|.+..  + ++..+|+|..+..  .+....+-.+|+....++ .|+|.++.+..+.+++..+
T Consensus       115 ~~~~~~~~g~~~g~~~s~~~~~~~~~~s~~~~a~k~s~~p~s~p~~~~~k~~~~~s~~~i~~~~~~v~~~~~~e~~~~lf  194 (524)
T KOG0601|consen  115 RFPISSRTGSLPGSKGSVFKSRCTNSESPHKFAVKKSKIPFSPPLDSKRKLREFLSHHKIDSHENPVRDSPAWEGSGILF  194 (524)
T ss_pred             hcccccccccCCCCCceeecccCCcccCCcccccccccCCCCCccccccccchhhcccccCccccccccCcccccCCcce
Confidence            4556678999  99999999875  3 6788899874332  223333446677777778 5999999999999999999


Q ss_pred             EEEecCCCCC----------CC----HHHHH-------------HHHHHHHhccCCCcEEEcCC-CcEEEEecCCceecC
Q 047066          177 LVNEFVKLPT----------IS----WEVRI-------------RIAAETAEDIKSINILLDDN-YTTKVCDFGASKLVP  228 (256)
Q Consensus       177 lv~e~~~~~~----------l~----~~~~~-------------~~~~~i~rdlk~~NiLi~~~-~~~ki~DFGla~~~~  228 (256)
                      +-+|++..-.          ++    |....             +....++.|++|.||+...+ ..++++|||+...+.
T Consensus       195 iqtE~~~~sl~~~~~~~~~~~p~~~l~~~~~~~~~~~~~al~~~hs~~~~~~~~kp~~i~~~~~~~s~~~~df~~v~~i~  274 (524)
T KOG0601|consen  195 IQTELCGESLQSYCHTPCNFLPDNLLWNSLRDWLSRDVTALSHLHSNNIVHDDLKPANIFTTSDWTSCKLTDFGLVSKIS  274 (524)
T ss_pred             eeeccccchhHHhhhcccccCCchhhhhHHhhhhhcccccccccCCCcccccccchhheecccccceeecCCcceeEEcc
Confidence            9999986411          11    11111             11123335999999999998 899999999998886


Q ss_pred             CCCcee----eeeeeecccc---cccccCCCCCCC
Q 047066          229 IDETQL----STMVQGTLGY---YLHTSQGTLNKE  256 (256)
Q Consensus       229 ~~~~~~----~~~~~Gt~~y---~~~~~~~t~ksD  256 (256)
                      ...-..    .....|...|   .+..+.++.++|
T Consensus       275 ~~~~~~~~~~~~r~~~~~~Y~~ke~~~~l~~~~~d  309 (524)
T KOG0601|consen  275 DGNFSSVFKVSKRPEGDCIYAAKELLNGLATFASD  309 (524)
T ss_pred             CCccccceeeeecCCCCceEeChhhhccccchHhh
Confidence            543211    1122466667   555555555443

>KOG1023 consensus Natriuretic peptide receptor, guanylate cyclase [Signal transduction mechanisms]

Probab=97.76  E-value=2.9e-05  Score=68.98  Aligned_cols=75  Identities=21%  Similarity=0.422  Sum_probs=61.6

Q ss_pred             HHhCCCCcccceeeEEEECCEEEEEEecCCCCCCC-----------HHHHHHHHHHHH--------------hccCCCcE
Q 047066          154 LSQINHRNVVGLLGCCLETEVPLLVNEFVKLPTIS-----------WEVRIRIAAETA--------------EDIKSINI  208 (256)
Q Consensus       154 l~~l~h~niv~l~~~~~~~~~~~lv~e~~~~~~l~-----------~~~~~~~~~~i~--------------rdlk~~Ni  208 (256)
                      |+.+.|.|+.+++|.+..++..+++.+||..|+|.           +.-......++.              -.|+++|+
T Consensus         1 l~~l~h~n~~~f~g~~~~~~~~~~i~~~c~rGsl~D~i~~~~~~~d~~F~~s~~rdi~~Gl~ylh~s~i~~hg~l~s~nC   80 (484)
T KOG1023|consen    1 LRQLDHDNLNKFIGASVDGPEMIVIWEYCSRGSLLDILSNEDIKLDYFFILSFIRDISKGLAYLHNSPIGYHGALKSSNC   80 (484)
T ss_pred             CcccchhhhhhheeeEecCCceEEEEeeecCccHHhHHhccccCccHHHHHHHHHHHHHHHHHHhcCcceeeeeeccccc
Confidence            35688999999999999999999999999998863           333334444444              29999999


Q ss_pred             EEcCCCcEEEEecCCceecC
Q 047066          209 LLDDNYTTKVCDFGASKLVP  228 (256)
Q Consensus       209 Li~~~~~~ki~DFGla~~~~  228 (256)
                      ++|....+||+|||+.....
T Consensus        81 lvd~~w~lklt~~Gl~~~~~  100 (484)
T KOG1023|consen   81 LVDSRWVLKLTDFGLNSLLE  100 (484)
T ss_pred             eeeeeEEEEechhhhccccc
Confidence            99999999999999988764

>PF13095 FTA2: Kinetochore Sim4 complex subunit FTA2

Probab=97.72  E-value=0.00049  Score=54.32  Aligned_cols=115  Identities=20%  Similarity=0.289  Sum_probs=79.8

Q ss_pred             CCCcccceeeeeCc-eEEEEEEECCCcEEEEEEecc---c---------Ch---------hHHHHHHHHHHHHHhCC---
Q 047066          104 NNYAYDRMIGRGGY-GTVFLGSLSDNKAIAIKKSRI---V---------YQ---------SQIEQCINKVVVLSQIN---  158 (256)
Q Consensus       104 ~~~~~~~~lg~G~~-g~V~~~~~~~~~~vavK~~~~---~---------~~---------~~~~~~~~E~~~l~~l~---  158 (256)
                      .+++.++.||.|.- |.||++.. +|..+|+|....   .         ..         ....-|..|.....+|+   
T Consensus        37 ~~I~flefLg~g~~~~~V~kv~I-~g~~YALKlf~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~PF~~ECRAfgRLke~~  115 (207)
T PF13095_consen   37 DDIEFLEFLGHGSHDGYVFKVEI-DGRIYALKLFRFWDYTEPDYTRERFAGHETSLSTPAHYADPFNCECRAFGRLKEAG  115 (207)
T ss_pred             CcEeeeeecCCCCceeEEEEEEE-CCeEEEEEEeeccccCCCccccccccccccccchhhhhcChHHHHHHhhHHHHhcc
Confidence            78899999999999 99999999 777999998211   0         00         11235778888877664   


Q ss_pred             CCcc--cceeeEEEEC------------------CEEEEEEecCCCCC-CCHHHHHHHHHHHH---------hccCCCcE
Q 047066          159 HRNV--VGLLGCCLET------------------EVPLLVNEFVKLPT-ISWEVRIRIAAETA---------EDIKSINI  208 (256)
Q Consensus       159 h~ni--v~l~~~~~~~------------------~~~~lv~e~~~~~~-l~~~~~~~~~~~i~---------rdlk~~Ni  208 (256)
                      +.++  ++++||..=.                  ....||.||.+... ++.....++..++.         +|+++.|.
T Consensus       116 ~e~~~Avkc~Gyl~L~~~~q~~~~~~~~~~~~~~~~~aIVKD~v~~~~~~~~~~~~~~~~dl~~~~k~gI~~~Dv~~~ny  195 (207)
T PF13095_consen  116 REGLWAVKCHGYLLLTEDQQFEQLRQRGSDHRPLPIRAIVKDFVPDDPPLQIRDIPQMLRDLKILHKLGIVPRDVKPRNY  195 (207)
T ss_pred             ccCceEEEeeEEEEEchHHHHHHhhcccccCCCCccEEEEEeecCCccccchhHHHHHHHHHHHHHHCCeeeccCccccc
Confidence            5566  8999987421                  13468999987765 44333333333333         59999988


Q ss_pred             EEcCCCcEEEEecCCc
Q 047066          209 LLDDNYTTKVCDFGAS  224 (256)
Q Consensus       209 Li~~~~~~ki~DFGla  224 (256)
                      .     .-||.|||.+
T Consensus       196 ~-----~G~lvDfs~~  206 (207)
T PF13095_consen  196 R-----GGKLVDFSSS  206 (207)
T ss_pred             c-----CCEEEecccC
Confidence            6     5688999864

>COG2112 Predicted Ser/Thr protein kinase [Signal transduction mechanisms]

Probab=97.72  E-value=0.00037  Score=53.64  Aligned_cols=114  Identities=11%  Similarity=0.159  Sum_probs=75.5

Q ss_pred             CcccceeeeeCceEEEEEEECCCcEEEEEEecccChhHHHHHHHHHHHHHhCCCCcccc-eeeEEEECCEEEEEEecCCC
Q 047066          106 YAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVG-LLGCCLETEVPLLVNEFVKL  184 (256)
Q Consensus       106 ~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~-l~~~~~~~~~~~lv~e~~~~  184 (256)
                      ....+.|++|.+|.||+|.+ .+..+|+|.-+..+  ....+..|+++|..+...++-+ ++.+    +..++.|||..+
T Consensus        24 ~~v~~~L~KG~~s~Vyl~~~-~~~~~a~Kvrr~ds--~r~~l~kEakiLeil~g~~~~p~vy~y----g~~~i~me~i~G   96 (201)
T COG2112          24 LRVEKELAKGTTSVVYLGEW-RGGEVALKVRRRDS--PRRNLEKEAKILEILAGEGVTPEVYFY----GEDFIRMEYIDG   96 (201)
T ss_pred             hhhhhhhhcccccEEEEeec-cCceEEEEEecCCc--chhhHHHHHHHHHHhhhcCCCceEEEe----chhhhhhhhhcC
Confidence            44557899999999999999 45588888765443  3467889999999988766643 4433    234456999999


Q ss_pred             CCCCHHHH---HHHHHHHH-------------hcc-CCCcEEEcCCCcEEEEecCCcee
Q 047066          185 PTISWEVR---IRIAAETA-------------EDI-KSINILLDDNYTTKVCDFGASKL  226 (256)
Q Consensus       185 ~~l~~~~~---~~~~~~i~-------------rdl-k~~NiLi~~~~~~ki~DFGla~~  226 (256)
                      ..|.....   .+....++             ..| .|...++-.++.+-|+||.-|+.
T Consensus        97 ~~L~~~~~~~~rk~l~~vlE~a~~LD~~GI~H~El~~~~k~vlv~~~~~~iIDFd~At~  155 (201)
T COG2112          97 RPLGKLEIGGDRKHLLRVLEKAYKLDRLGIEHGELSRPWKNVLVNDRDVYIIDFDSATF  155 (201)
T ss_pred             cchhhhhhcccHHHHHHHHHHHHHHHHhccchhhhcCCceeEEecCCcEEEEEccchhh
Confidence            77643222   11111111             122 35444554555999999999884

>KOG0601 consensus Cyclin-dependent kinase WEE1 [Cell cycle control, cell division, chromosome partitioning]

Probab=97.68  E-value=3.1e-05  Score=69.09  Aligned_cols=134  Identities=21%  Similarity=0.260  Sum_probs=95.8

Q ss_pred             ccChHH-HHhhcCCCcccceeeeeCceEEEEEEEC--CCcEEEEEEecccChhHH--HHHHHHHHHHHhC-CCCccccee
Q 047066           93 IFTAGE-LKIATNNYAYDRMIGRGGYGTVFLGSLS--DNKAIAIKKSRIVYQSQI--EQCINKVVVLSQI-NHRNVVGLL  166 (256)
Q Consensus        93 ~~~~~~-~~~~~~~~~~~~~lg~G~~g~V~~~~~~--~~~~vavK~~~~~~~~~~--~~~~~E~~~l~~l-~h~niv~l~  166 (256)
                      .+..++ -.....+|.....||.|.|+.|+.+..+  ++..+++|.+........  ..-+.|+.+...+ .|.++++.+
T Consensus       253 i~~~~~~~s~~~~df~~v~~i~~~~~~~~~~~~~r~~~~~~Y~~ke~~~~l~~~~~di~sl~ev~l~~~l~~~~~~~g~~  332 (524)
T KOG0601|consen  253 IFTTSDWTSCKLTDFGLVSKISDGNFSSVFKVSKRPEGDCIYAAKELLNGLATFASDIFSLGEVILEAILGSHLPSVGKN  332 (524)
T ss_pred             eecccccceeecCCcceeEEccCCccccceeeeecCCCCceEeChhhhccccchHhhhcchhhhhHhhHhhcccccCCCC
Confidence            334444 3344567888899999999999988743  578889987654332222  2346677777777 699999988


Q ss_pred             eEEEECCEEEEEEecCCCCCCCHHHH----------HHHHHHHH-------------hccCCCcEEEcCC-CcEEEEecC
Q 047066          167 GCCLETEVPLLVNEFVKLPTISWEVR----------IRIAAETA-------------EDIKSINILLDDN-YTTKVCDFG  222 (256)
Q Consensus       167 ~~~~~~~~~~lv~e~~~~~~l~~~~~----------~~~~~~i~-------------rdlk~~NiLi~~~-~~~ki~DFG  222 (256)
                      ..|..-...++-.|||++++......          +.+..++.             .|++|+||++..+ +..+++|||
T Consensus       333 ~~W~~~r~~~ip~e~~~~~s~~l~~~~~~~~d~~~~~~~~~q~~~~l~~i~s~~~~~~d~~psni~i~~~~~~~~~~~~~  412 (524)
T KOG0601|consen  333 SSWSQLRQGYIPLEFCEGGSSSLRSVTSQMLDEDPRLRLTAQILTALNVIHSKLFVHLDVKPSNILISNDGFFSKLGDFG  412 (524)
T ss_pred             CCccccccccCchhhhcCcchhhhhHHHHhcCcchhhhhHHHHHhccccccchhhhcccccccceeeccchhhhhccccc
Confidence            88887777789999999987644332          22222222             4999999999886 789999999


Q ss_pred             Ccee
Q 047066          223 ASKL  226 (256)
Q Consensus       223 la~~  226 (256)
                      .+..
T Consensus       413 ~~t~  416 (524)
T KOG0601|consen  413 CWTR  416 (524)
T ss_pred             cccc
Confidence            9863

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=97.67  E-value=4.7e-06  Score=79.13  Aligned_cols=120  Identities=18%  Similarity=0.165  Sum_probs=83.5

Q ss_pred             CCcccceeeeeCceEEEEEEECCCcEEEEEEecccC-hhHHHHH---HHHHHHHHhCCCCcccceeeEEEECCEEEEEEe
Q 047066          105 NYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVY-QSQIEQC---INKVVVLSQINHRNVVGLLGCCLETEVPLLVNE  180 (256)
Q Consensus       105 ~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~-~~~~~~~---~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e  180 (256)
                      .+...+.||++.|=+|.+|+++.|. |+||..-..+ .-..+.+   +.|+. ....+|||.+++.-+.......|+|-+
T Consensus        24 e~~~~~~LGstRFlKv~r~k~~eG~-vVvKVFvk~~p~~sL~~~~qrL~~ik-~~l~~~pn~lPfqk~~~t~kAAylvRq  101 (1431)
T KOG1240|consen   24 ECHYVENLGSTRFLKVARAKDREGL-VVVKVFVKQDPTISLRPFKQRLEEIK-FALMKAPNCLPFQKVLVTDKAAYLVRQ  101 (1431)
T ss_pred             ceeeecccCchhhhhhhhccCCCce-EEEEEEeccCCCCCchHHHHHHHHHH-HHhhcCCcccchHHHHHhhHHHHHHHH
Confidence            5777789999999999999987776 8888753322 2233333   44444 455589999998887777777777777


Q ss_pred             cCCCCCC---------CHHHHHHHHHH-------HH------hccCCCcEEEcCCCcEEEEecCCcee
Q 047066          181 FVKLPTI---------SWEVRIRIAAE-------TA------EDIKSINILLDDNYTTKVCDFGASKL  226 (256)
Q Consensus       181 ~~~~~~l---------~~~~~~~~~~~-------i~------rdlk~~NiLi~~~~~~ki~DFGla~~  226 (256)
                      |..+...         .......++.|       .|      .|||.+||||+.-.-+.|+||..-+-
T Consensus       102 yvkhnLyDRlSTRPFL~~iEKkWiaFQLL~al~qcH~~gVcHGDIKsENILiTSWNW~~LtDFAsFKP  169 (1431)
T KOG1240|consen  102 YVKHNLYDRLSTRPFLVLIEKKWIAFQLLKALSQCHKLGVCHGDIKSENILITSWNWLYLTDFASFKP  169 (1431)
T ss_pred             HHhhhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHcCccccccccceEEEeeechhhhhcccccCC
Confidence            7765321         12222333333       33      39999999999999999999976543

>smart00750 KIND kinase non-catalytic C-lobe domain

Probab=97.63  E-value=0.0001  Score=56.87  Aligned_cols=65  Identities=15%  Similarity=0.039  Sum_probs=51.3

Q ss_pred             CCCCCHHHHHHHHHHHHh-------ccCCCcEEEcCCCcEEEEecCCceecCCCCceeeeeeeecccc----cccccCCC
Q 047066          184 LPTISWEVRIRIAAETAE-------DIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTLGY----YLHTSQGT  252 (256)
Q Consensus       184 ~~~l~~~~~~~~~~~i~r-------dlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~~~~Gt~~y----~~~~~~~t  252 (256)
                      ++.+++.....++.|+++       .-||+|||++.++.+|+  ||+++......      ..||+.|    .+.++.++
T Consensus        11 ~~~l~~~~~~~i~~qi~~~L~~lH~~~kp~Nil~~~~~~~~~--fG~~~~~~~~~------~~g~~~y~aPE~~~~~~~~   82 (176)
T smart00750       11 GRPLNEEEIWAVCLQCLRALRELHRQAKSGNILLTWDGLLKL--DGSVAFKTPEQ------SRVDPYFMAPEVIQGQSYT   82 (176)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhcCCcccEeEcCccceee--ccceEeecccc------CCCcccccChHHhcCCCCc
Confidence            345888888888888774       33999999999999999  99998764322      2488989    66777888


Q ss_pred             CCCC
Q 047066          253 LNKE  256 (256)
Q Consensus       253 ~ksD  256 (256)
                      .|+|
T Consensus        83 ~~~D   86 (176)
T smart00750       83 EKAD   86 (176)
T ss_pred             chhh
Confidence            8887

It is an interaction domain identified as being similar to the C-terminal protein kinase catalytic fold (C lobe). Its presence at the N terminus of signalling proteins and the absence of the active-site residues in the catalytic and activation loops suggest that it folds independently and is likely to be non-catalytic. The occurrence of KIND only in metazoa implies that it has evolved from the catalytic protein kinase domain into an interaction domain possibly by keeping the substrate-binding features

>PRK15123 lipopolysaccharide core heptose(I) kinase RfaP; Provisional

Probab=97.59  E-value=0.0045  Score=51.48  Aligned_cols=115  Identities=10%  Similarity=0.033  Sum_probs=70.5

Q ss_pred             eeeeeCceEEEEEEECCCcEEEEEEecccChh-HH----------HHHHHHHHHHHhCC--CCcccceeeEEEE-----C
Q 047066          111 MIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQS-QI----------EQCINKVVVLSQIN--HRNVVGLLGCCLE-----T  172 (256)
Q Consensus       111 ~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~-~~----------~~~~~E~~~l~~l~--h~niv~l~~~~~~-----~  172 (256)
                      ++-+.....|++... +|+.+.+|......-. ..          ..+.+|...+..+.  .-....+.++...     .
T Consensus        29 ~v~~~~~rrvvr~~~-~g~~~~vKr~~~~~~~~~~k~l~~~~~p~~~a~rE~~~l~~L~~~GIptP~pVa~~e~~~~~~~  107 (268)
T PRK15123         29 VFRELEGRRTLRFEL-AGKSYFLKWHRGTGWGEIFKNLLSLRMPVLGADREWRAIHRLHEVGVDTMTGVAFGERGSNPAT  107 (268)
T ss_pred             EEecCCCceEEEEEE-CCEEEEEEEecCCcHHHHhhhhcccccccHHHHHHHHHHHHHHHcCCCCCCeeEEEEecCCCcc
Confidence            444444445666666 6778899965332210 01          14778998888874  3334455555543     2


Q ss_pred             CEEEEEEecCCCC-CCCH------------HHHHHHHHHHH-------------hccCCCcEEEcC-------CCcEEEE
Q 047066          173 EVPLLVNEFVKLP-TISW------------EVRIRIAAETA-------------EDIKSINILLDD-------NYTTKVC  219 (256)
Q Consensus       173 ~~~~lv~e~~~~~-~l~~------------~~~~~~~~~i~-------------rdlk~~NiLi~~-------~~~~ki~  219 (256)
                      ...++|||++++. ++..            .....+..+++             +|++++|||++.       +..+.++
T Consensus       108 ~~s~LVte~l~~~~sL~~~~~~~~~~~~~~~~~~~ll~~la~~i~~LH~~Gi~HgDL~~~NiLl~~~~~~~~~~~~~~LI  187 (268)
T PRK15123        108 RTSFIITEDLAPTISLEDYCADWATNPPDPRLKRMLIKRVATMVRDMHAAGINHRDCYICHFLLHLPFPGREEDLKLSVI  187 (268)
T ss_pred             ceeEEEEeeCCCCccHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHHHCcCccCCCChhhEEEeccccCCCCCceEEEE
Confidence            3578999999874 3311            11222333333             499999999975       4689999


Q ss_pred             ecCCcee
Q 047066          220 DFGASKL  226 (256)
Q Consensus       220 DFGla~~  226 (256)
                      ||+.+..
T Consensus       188 Dl~r~~~  194 (268)
T PRK15123        188 DLHRAQI  194 (268)
T ss_pred             ECCcccc
Confidence            9998864

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=97.59  E-value=0.00021  Score=65.01  Aligned_cols=103  Identities=14%  Similarity=0.079  Sum_probs=75.8

Q ss_pred             ECCCcEEEEEEecccChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEecCCCCC-----CCHHHHHHHHHH-
Q 047066          125 LSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEFVKLPT-----ISWEVRIRIAAE-  198 (256)
Q Consensus       125 ~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~~~~-----l~~~~~~~~~~~-  198 (256)
                      ..++.+|.|...+.......+...+.++.|+.++||||++++..+...+..|+|+|.+.--.     +......-.+.| 
T Consensus        34 k~~~~~vsVF~~~~~~~~~~~~~~~A~k~lKtlRHP~Il~yL~t~e~~~~~ylvTErV~Pl~~~lk~l~~~~v~~Gl~qI  113 (690)
T KOG1243|consen   34 KADGGPVSVFVYKRSNGEVTELAKRAVKRLKTLRHPNILSYLDTTEEEGTLYLVTERVRPLETVLKELGKEEVCLGLFQI  113 (690)
T ss_pred             eccCCceEEEEEeCCCchhhHHHHHHHHHhhhccCchhhhhhhhhcccCceEEEeeccccHHHHHHHhHHHHHHHHHHHH
Confidence            33677888887765555455667788899999999999999999999999999999875422     111111111122 


Q ss_pred             -------------HHhccCCCcEEEcCCCcEEEEecCCceec
Q 047066          199 -------------TAEDIKSINILLDDNYTTKVCDFGASKLV  227 (256)
Q Consensus       199 -------------i~rdlk~~NiLi~~~~~~ki~DFGla~~~  227 (256)
                                   +|.|+....|++++.|.-||++|.++...
T Consensus       114 l~AL~FL~~d~~lvHgNv~~~SVfVn~~GeWkLggle~v~~~  155 (690)
T KOG1243|consen  114 LAALSFLNDDCNLVHGNVCKDSVFVNESGEWKLGGLELVSKA  155 (690)
T ss_pred             HHHHHHHhccCCeeeccEeeeeEEEcCCCcEEEeeeEEEecc
Confidence                         22488888999999999999999887543

>KOG4158 consensus BRPK/PTEN-induced protein kinase [Signal transduction mechanisms]

Probab=97.58  E-value=0.00011  Score=63.15  Aligned_cols=23  Identities=26%  Similarity=0.599  Sum_probs=19.7

Q ss_pred             cCCCcccceeeeeCceEEEEEEE
Q 047066          103 TNNYAYDRMIGRGGYGTVFLGSL  125 (256)
Q Consensus       103 ~~~~~~~~~lg~G~~g~V~~~~~  125 (256)
                      -++|++.+.||+|....||.++.
T Consensus       156 iddyeiG~~igkGC~AaVY~A~~  178 (598)
T KOG4158|consen  156 IDDYEIGEFIGKGCNAAVYSARL  178 (598)
T ss_pred             hhhhcccchhhccchhhhhhhhc
Confidence            35788999999999999998864

>PF01636 APH: Phosphotransferase enzyme family This family is part of the larger protein kinase superfamily

Probab=97.55  E-value=0.0014  Score=52.63  Aligned_cols=74  Identities=20%  Similarity=0.191  Sum_probs=52.7

Q ss_pred             ceeeeeCceEEEEEEECCCcEEEEEEecccChhHHHHHHHHHHHHHhCCC--CcccceeeEEEE---CCEEEEEEecCCC
Q 047066          110 RMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINH--RNVVGLLGCCLE---TEVPLLVNEFVKL  184 (256)
Q Consensus       110 ~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h--~niv~l~~~~~~---~~~~~lv~e~~~~  184 (256)
                      +.++.|..+.||+....+ ..+++|.....  .....+.+|..+++.+..  ..+.+++.....   ....+++|+++++
T Consensus         3 ~~l~~G~~n~~~~v~~~~-~~~vlK~~~~~--~~~~~~~~e~~~~~~l~~~~~pvP~~~~~~~~~~~~~~~~~~~~~i~g   79 (239)
T PF01636_consen    3 RPLSGGFSNRVYRVTTDD-GRYVLKFYRPP--DAAERLRREAAVLRQLAEHGIPVPRVLAFDTSDEFNGFPYLLMEYIPG   79 (239)
T ss_dssp             EEEEESSSSEEEEEEETT-SEEEEEEESSH--HHHHHHHHHHHHHHHHHHTTSBS--EEEEEEETEETSEEEEEEEEESS
T ss_pred             ccCCCCCeeeEEEEEECC-cEEEEEEeCCC--CCHHHHHHHHHHHHHHHhcCCCCceEEeecccccccccceEEEEEecc
Confidence            578999999999999866 68999986544  345677889999888842  245667765433   3457899999887


Q ss_pred             CC
Q 047066          185 PT  186 (256)
Q Consensus       185 ~~  186 (256)
                      ..
T Consensus        80 ~~   81 (239)
T PF01636_consen   80 RP   81 (239)
T ss_dssp             EE
T ss_pred             cc
Confidence            43

; InterPro: IPR002575 This entry consists of bacterial antibiotic resistance proteins, which confer resistance to various aminoglycosides they include:- aminoglycoside 3'-phosphotransferase or kanamycin kinase / neomycin-kanamycin phosphotransferase and streptomycin 3''-kinase or streptomycin 3''-phosphotransferase. The aminoglycoside phosphotransferases inactivate aminoglycoside antibiotics via phosphorylation []. The proteins are found in a range of taxonomic groups.; PDB: 2PPQ_A 2Q83_B 3TDV_B 3TDW_A 3I0O_A 3I0Q_A 3I1A_B 3Q2M_A 3HAV_C 2PUI_B ....

>cd05150 APH Aminoglycoside 3'-phosphotransferase (APH)

Probab=97.50  E-value=0.0016  Score=53.17  Aligned_cols=73  Identities=12%  Similarity=0.002  Sum_probs=50.0

Q ss_pred             eeeeeCc-eEEEEEEECCCcEEEEEEecccChhHHHHHHHHHHHHHhC-CCCcccceeeEEEECCEEEEEEecCCCCCC
Q 047066          111 MIGRGGY-GTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQI-NHRNVVGLLGCCLETEVPLLVNEFVKLPTI  187 (256)
Q Consensus       111 ~lg~G~~-g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~lv~e~~~~~~l  187 (256)
                      .|..|.. ..||+.... +..+.+|......   .....+|+.+++.+ ++-.+.+++++....+..+++||+++|.++
T Consensus         5 ~~~~g~~~~~v~~~~~~-~~~~~vk~~~~~~---~~~~~~E~~~l~~l~~~~~vP~v~~~~~~~~~~~lv~e~i~G~~l   79 (244)
T cd05150           5 RVTEGQSGATVYRLDGK-NPGLYLKIAPSGP---TYELEREAERLRWLAGKLPVPEVIDYGSDDGRAWLLTSAVPGVPA   79 (244)
T ss_pred             ecCCCCCcCeEEEEcCC-CCcEEEEecCCCc---ccchHHHHHHHHHHHhcCCCCeEEEEEecCCccEEEEEeeCCccH
Confidence            3445555 678988764 4677788765432   24566799998888 344566777777766678999999988443

The APH subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). APH catalyzes the transfer of the gamma-phosphoryl group from ATP to aminoglycoside antibiotics such as kanamycin, streptomycin, neomycin, and gentamicin, among others. The aminoglycoside antibiotics target the 30S ribosome and promote miscoding, leading to the production of defective proteins which insert into the bacterial membrane, resulting in membrane damage and the ultimate demise of the bacterium. Phosphorylation of the aminoglycoside antibiotics results in their inactivation, leading to bacterial antibiotic resistance. The APH gene is found on transposons and plasmids and is thought to have originated as a self-defense mechanism used by microorganisms that produce the antibio

>KOG1235 consensus Predicted unusual protein kinase [General function prediction only]

Probab=97.48  E-value=0.001  Score=60.15  Aligned_cols=118  Identities=14%  Similarity=0.086  Sum_probs=76.8

Q ss_pred             ceeeeeCceEEEEEEECCCcEEEEEEecccChhH-------------------------------HH------HHHHHHH
Q 047066          110 RMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQ-------------------------------IE------QCINKVV  152 (256)
Q Consensus       110 ~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~-------------------------------~~------~~~~E~~  152 (256)
                      +.||.-+.|+|++++.++|+.||||..++.-+..                               ..      +|.+|++
T Consensus       167 ~piaaASlaQVhrA~L~~G~~VaVKVQ~P~l~~~~~~Dl~~~~~~~~~l~k~~p~~~~~~lvdE~~~~L~~ELDF~~EA~  246 (538)
T KOG1235|consen  167 EPIAAASLAQVHRARLKNGEDVAVKVQHPGLEKLIMLDLRNLRLLAKVLQKFFPDFDLVWLVDEIAKSLPQELDFTKEAK  246 (538)
T ss_pred             chhhhcchhheEEEEecCCCEEEEEecCcChHHHHHHHHHHHHHHHHHHHHhCcCCchhhHHHHHHhhhHhhcchHHHHH
Confidence            5899999999999999999999999765422111                               00      1333443


Q ss_pred             HHHh----CCCCc------ccceeeEEEECCEEEEEEecCCCCCCCHHHHHH----------------HHHH------HH
Q 047066          153 VLSQ----INHRN------VVGLLGCCLETEVPLLVNEFVKLPTISWEVRIR----------------IAAE------TA  200 (256)
Q Consensus       153 ~l~~----l~h~n------iv~l~~~~~~~~~~~lv~e~~~~~~l~~~~~~~----------------~~~~------i~  200 (256)
                      -..+    +.|-+      |.+++..  -.....++||||+|..++....+.                .+.|      +|
T Consensus       247 Nae~~~~~f~~~~~~~~V~VP~Vy~~--~st~RVLtME~~~G~~i~Dl~~i~~~gi~~~~i~~~l~~~~~~qIf~~GffH  324 (538)
T KOG1235|consen  247 NAERFRENFKDFSLLTYVLVPKVYWD--LSTKRVLTMEYVDGIKINDLDAIDKRGISPHDILNKLVEAYLEQIFKTGFFH  324 (538)
T ss_pred             hHHHHHHHHHhcccccceeCCeehhh--cCcceEEEEEecCCccCCCHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCcc
Confidence            3322    33444      2233322  234578999999997765433211                1112      33


Q ss_pred             hccCCCcEEEcC----CCcEEEEecCCceecCC
Q 047066          201 EDIKSINILLDD----NYTTKVCDFGASKLVPI  229 (256)
Q Consensus       201 rdlk~~NiLi~~----~~~~ki~DFGla~~~~~  229 (256)
                      .|-.|.||+++.    +..+.+-|||+...+..
T Consensus       325 aDPHPGNilv~~~~~~~~~ivllDhGl~~~is~  357 (538)
T KOG1235|consen  325 ADPHPGNILVRPNPEGDEEIVLLDHGLYAVISH  357 (538)
T ss_pred             CCCCCCcEEEecCCCCCccEEEEcccccccccH
Confidence            699999999984    56899999999987643

>PF06176 WaaY: Lipopolysaccharide core biosynthesis protein (WaaY); InterPro: IPR009330 This family consists of several bacterial lipopolysaccharide core biosynthesis proteins (WaaY or RfaY)

Probab=97.45  E-value=0.007  Score=48.52  Aligned_cols=124  Identities=15%  Similarity=0.127  Sum_probs=74.6

Q ss_pred             hhcCCCcccceeeeeCceEEEEEEECCCcEEEEEEecccChhHHHHH---------HHHHHHHHhCCC---CcccceeeE
Q 047066          101 IATNNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQC---------INKVVVLSQINH---RNVVGLLGC  168 (256)
Q Consensus       101 ~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~---------~~E~~~l~~l~h---~niv~l~~~  168 (256)
                      +...+|...+++-......|.+-.. ++..+.+|..+.......+.|         .+++..+.+++.   .....++-+
T Consensus        28 i~~~~~~~~kv~k~~~r~~ValIei-~~~kyIlK~pr~~~~r~er~~~sf~kg~~~~~l~~~~~~i~~~g~~~~~~~yl~  106 (229)
T PF06176_consen   28 ILDNNYKIIKVFKNTKRNYVALIEI-DGKKYILKEPREENRRPERRFKSFFKGSEYSRLINNTDKIRNEGFTEPADPYLA  106 (229)
T ss_pred             HHhCCceEEEeecCCCccEEEEEEE-CCcEEEEeccchhhhhHHHHHHHHhccHHHHHHHHHHHHHHHcCccccccceee
Confidence            4556788878877776666666555 678888997655433222222         233333333322   222232322


Q ss_pred             EE-----ECCEEEEEEecCCCCCCCHH---------HHHHHHHHHH------hccCCCcEEEcCCCcEEEEecCCcee
Q 047066          169 CL-----ETEVPLLVNEFVKLPTISWE---------VRIRIAAETA------EDIKSINILLDDNYTTKVCDFGASKL  226 (256)
Q Consensus       169 ~~-----~~~~~~lv~e~~~~~~l~~~---------~~~~~~~~i~------rdlk~~NiLi~~~~~~ki~DFGla~~  226 (256)
                      ..     -....+++|||++|..+...         .......++|      .|..|.|++++++ .+++.||+..+.
T Consensus       107 ~ekk~~~~~~~~~ll~EYIeG~~l~d~~~i~e~~~~ki~~~ikqlH~~G~~HGD~hpgNFlv~~~-~i~iID~~~k~~  183 (229)
T PF06176_consen  107 AEKKIFRYTSSYVLLMEYIEGVELNDIEDIDEDLAEKIVEAIKQLHKHGFYHGDPHPGNFLVSNN-GIRIIDTQGKRM  183 (229)
T ss_pred             eeeeeccceeEEEEEEEEecCeecccchhcCHHHHHHHHHHHHHHHHcCCccCCCCcCcEEEECC-cEEEEECccccc
Confidence            22     23456789999999776431         1233344555      3999999999865 499999987764

The waaY, waaQ, and waaP genes are located in the central operon of the waa (formerly rfa) locus on the chromosome of Escherichia coli. This locus contains genes whose products are involved in the assembly of the core region of the lipopolysaccharide molecule. WaaY is the enzyme that phosphorylates HepII in this system [].; GO: 0009244 lipopolysaccharide core region biosynthetic process

>PF12260 PIP49_C: Protein-kinase domain of FAM69; InterPro: IPR022049 Family with sequence similarity 69 has three members (A, B and C)

Probab=97.37  E-value=0.00078  Score=52.96  Aligned_cols=76  Identities=26%  Similarity=0.374  Sum_probs=62.4

Q ss_pred             HHHHHHHHhCCC-CcccceeeEEEECCEEEEEEecCCCCC-------------CCHHHHHHHHHHHHh------------
Q 047066          148 INKVVVLSQINH-RNVVGLLGCCLETEVPLLVNEFVKLPT-------------ISWEVRIRIAAETAE------------  201 (256)
Q Consensus       148 ~~E~~~l~~l~h-~niv~l~~~~~~~~~~~lv~e~~~~~~-------------l~~~~~~~~~~~i~r------------  201 (256)
                      ..|.-+++.+++ +++.+++|+|-    .++++||...++             -+|..+.+++.++.+            
T Consensus         7 ~~E~lll~~l~~~~~~pk~lG~CG----~~~v~E~~~~~~~~~~~~~l~~~~~~~w~~R~~iA~~lL~~l~~l~~~~~~~   82 (188)
T PF12260_consen    7 NNEPLLLQLLQGSEPFPKLLGSCG----RFYVVEYVGAGSLYGIYRPLSQFLQSPWEQRAKIALQLLELLEELDHGPLGF   82 (188)
T ss_pred             ccHHHHHHHcCCCCCCCCeeeECC----CEEEEEeecCccccccccccccccccCHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence            357888888965 79999999993    356888888642             379999999988874            


Q ss_pred             ----ccCCCcEEEcCCCcEEEEecCCceec
Q 047066          202 ----DIKSINILLDDNYTTKVCDFGASKLV  227 (256)
Q Consensus       202 ----dlk~~NiLi~~~~~~ki~DFGla~~~  227 (256)
                          |++|+|+-+++++.+|+.|...+...
T Consensus        83 ~~lcDv~~~nfgv~~~~~lk~iDld~v~~~  112 (188)
T PF12260_consen   83 FYLCDVSPDNFGVNDDGRLKLIDLDDVFVE  112 (188)
T ss_pred             EEEeecchHHeEEeCCCcEEEEechhcchh
Confidence                99999999999999999999876543

Proteins in this uncharacterised family are described as transmembrane proteins.

>PRK09550 mtnK methylthioribose kinase; Reviewed

Probab=97.37  E-value=0.0045  Score=54.32  Aligned_cols=73  Identities=19%  Similarity=0.198  Sum_probs=52.1

Q ss_pred             ceeeeeCceEEEEEEECCC-cEEEEEEeccc-------ChhHHHHHHHHHHHHHhC-CC--CcccceeeEEEECCEEEEE
Q 047066          110 RMIGRGGYGTVFLGSLSDN-KAIAIKKSRIV-------YQSQIEQCINKVVVLSQI-NH--RNVVGLLGCCLETEVPLLV  178 (256)
Q Consensus       110 ~~lg~G~~g~V~~~~~~~~-~~vavK~~~~~-------~~~~~~~~~~E~~~l~~l-~h--~niv~l~~~~~~~~~~~lv  178 (256)
                      +.+|.|.+..||++...+| +.+.||...+.       .+-..++...|.+.|..+ .+  .++.+++.+  +.+..++|
T Consensus        32 ~elggGn~N~VyrV~~~~g~~svIVKqa~p~~r~~g~~wpl~~eR~~~Eae~L~~l~~~~p~~VPkV~~~--D~~~~~lV  109 (401)
T PRK09550         32 REIGDGNLNLVFRVSDTEGGKSVIVKQALPYVRVVGESWPLTLDRARIEAEALKIQAKYVPDLVPKVYHY--DEELAVTV  109 (401)
T ss_pred             eEcCCCceEEEEEEEeCCCCeEEEEEecCcccccccccccccHHHHHHHHHHHHHHHhhCCCCCCeEEEE--CCCCCEEE
Confidence            4789999999999998776 58999975421       122446677888888876 22  346666655  34557899


Q ss_pred             EecCCC
Q 047066          179 NEFVKL  184 (256)
Q Consensus       179 ~e~~~~  184 (256)
                      ||++++
T Consensus       110 ME~L~~  115 (401)
T PRK09550        110 MEDLSD  115 (401)
T ss_pred             EecCCC
Confidence            999876

>KOG3741 consensus Poly(A) ribonuclease subunit [RNA processing and modification]

Probab=97.35  E-value=0.0014  Score=58.28  Aligned_cols=114  Identities=16%  Similarity=0.168  Sum_probs=81.6

Q ss_pred             eEEEEEEEC-CCcEEEEEEecccChhHHHHHHHHHHHHHhCCCCcccceeeEEEE----CCEEEEEEecCCCC-------
Q 047066          118 GTVFLGSLS-DNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLE----TEVPLLVNEFVKLP-------  185 (256)
Q Consensus       118 g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~----~~~~~lv~e~~~~~-------  185 (256)
                      .+.|++..+ +|..+++|+++............-++.++++.|+|+|++.+++.+    ...+.+|++|.++.       
T Consensus       290 ~Ttyk~~s~~DG~~YvLkRlhg~r~~~~nk~t~lve~wkkl~h~NvV~frevf~t~tF~D~SlvlvYDYyP~s~TL~d~~  369 (655)
T KOG3741|consen  290 ITTYKATSNVDGNAYVLKRLHGDRDQSTNKDTSLVEAWKKLCHTNVVPFREVFLTYTFGDLSLVLVYDYYPSSPTLYDLY  369 (655)
T ss_pred             ceeEeeeeccCCceeeeeeeccccccCcccchHHHHHHHHhccCceeehhhhhhhhccCcceEEEEEecCCCCchHHHHH
Confidence            568888854 899999999854433332334456788999999999999998873    55789999998661       


Q ss_pred             -------------------CCCHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCC
Q 047066          186 -------------------TISWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDE  231 (256)
Q Consensus       186 -------------------~l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~  231 (256)
                                         .+++.....++.|+.             +-|.+++||++.+..++|+.-|....+..+.
T Consensus       370 F~~~~~t~~~n~~~~~~~~~~~e~~lW~y~~QLtaaL~sIHssGLAck~L~~~kIlv~G~~RIriS~C~i~Dvl~~d~  447 (655)
T KOG3741|consen  370 FANPPFTKRTNSFYPSQNLKAPEEVLWSYISQLTAALYSIHSSGLACKTLDLKKILVTGKMRIRISGCGIMDVLQEDP  447 (655)
T ss_pred             ccCCccccccccccccCCCCchHHHHHHHHHHHHHHHHHHHhcCceeecccHhHeEeeCcceEEEecccceeeecCCC
Confidence                               112333333333333             5889999999999999999888877665544

>PF10707 YrbL-PhoP_reg: PhoP regulatory network protein YrbL; InterPro: IPR019647 This entry represents proteins that are activated by the protein PhoP

Probab=97.31  E-value=0.0068  Score=48.00  Aligned_cols=114  Identities=18%  Similarity=0.210  Sum_probs=72.7

Q ss_pred             cceeeeeCceEEEEEEECCCcEEEEEEecccC----------------hhHHHHHHHHHHHHHhCC------CCccccee
Q 047066          109 DRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVY----------------QSQIEQCINKVVVLSQIN------HRNVVGLL  166 (256)
Q Consensus       109 ~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~----------------~~~~~~~~~E~~~l~~l~------h~niv~l~  166 (256)
                      ...||+|+.=.||.  +++....+||......                .....+..+|+.-...+.      +.+|.+++
T Consensus         6 ~~~i~~G~~R~cy~--HP~dp~~cIKV~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~E~~~y~~l~~~~~~~~~~i~r~~   83 (199)
T PF10707_consen    6 SDLIAQGGERDCYQ--HPDDPNLCIKVMRPDRGERRRPFKRWLKRLRPKSRYRQNRRELRYYKQLSLRRGVDWSHIPRFY   83 (199)
T ss_pred             CcccccCCCceEEE--CCCCCCeEEEEEccccccccccchhHHHhhcccchhHHHHHHHHHHHHHhhccCCcccccccEe
Confidence            45899999888884  4455566788765544                112355666766655554      88999999


Q ss_pred             eEEEECCEEEEEEecCCC--CCC-------------CHHHHHHHHHH----------HHhccCCCcEEEcCCC----cEE
Q 047066          167 GCCLETEVPLLVNEFVKL--PTI-------------SWEVRIRIAAE----------TAEDIKSINILLDDNY----TTK  217 (256)
Q Consensus       167 ~~~~~~~~~~lv~e~~~~--~~l-------------~~~~~~~~~~~----------i~rdlk~~NiLi~~~~----~~k  217 (256)
                      |+..++..+-+|+|...+  |.+             +. .......+          +++|++|.||++....    .+.
T Consensus        84 G~veT~~G~Glv~e~I~d~dG~~s~TL~~~l~~~~~~~-~~~~~L~~f~~~l~~~~Iv~~dl~~~NIv~~~~~~~~~~lv  162 (199)
T PF10707_consen   84 GFVETNLGLGLVVELIRDADGNISPTLEDYLKEGGLTE-ELRQALDEFKRYLLDHHIVIRDLNPHNIVVQRRDSGEFRLV  162 (199)
T ss_pred             EEEecCCceEEEEEEEECCCCCcCccHHHHHHcCCccH-HHHHHHHHHHHHHHHcCCeecCCCcccEEEEecCCCceEEE
Confidence            999998888999997643  222             22 11111111          2259999999995332    567


Q ss_pred             EEe-cCCce
Q 047066          218 VCD-FGASK  225 (256)
Q Consensus       218 i~D-FGla~  225 (256)
                      |.| ||-..
T Consensus       163 lIDG~G~~~  171 (199)
T PF10707_consen  163 LIDGLGEKE  171 (199)
T ss_pred             EEeCCCCcc
Confidence            776 44433

PhoP controls the expression of a large number of genes that mediate adaptation to low Mg2+ environments and/or virulence in several bacterial species. YbrL is proposed to be acting in a loop activity with PhoP and PrmA analogous to the multi-component loop in Salmonella sp., where the PhoP-dependent PmrD protein activates the regulatory protein PmrA, and the activated PmrA then represses transcription from the PmrD promoter which harbours binding sites for both the PhoP and PmrA proteins. Expression of YrbL is induced in low Mg2+ in a PhoP-dependent fashion and repressed by Fe3+ in a PmrA-dependent manner [].

>TIGR02721 ycfN_thiK thiamine kinase

Probab=96.95  E-value=0.0087  Score=49.29  Aligned_cols=71  Identities=8%  Similarity=0.003  Sum_probs=42.3

Q ss_pred             eeeeCceEEEEEEECCCcEEEEEEecccChhHHHHHHHHHHHHHhCCCCcc-cceeeEEEECCEEEEEEecCCCCCC
Q 047066          112 IGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNV-VGLLGCCLETEVPLLVNEFVKLPTI  187 (256)
Q Consensus       112 lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~ni-v~l~~~~~~~~~~~lv~e~~~~~~l  187 (256)
                      +..|-...+|+... ++..+.+|..........-+..+|..+++.+....+ .+++...  .  -++|+||+++..+
T Consensus         4 ~~~G~tn~~y~~~~-~~~~~vlR~~~~~~~~~~~~r~~E~~~l~~l~~~g~~P~~i~~~--~--~~~v~e~i~G~~~   75 (256)
T TIGR02721         4 LSGGLTNRSWRIEH-PGISFVWRPQSPVCKALGVDRQREYQILQALSALGLAPKPILVN--E--HWLLVEWLEGEVI   75 (256)
T ss_pred             CCCcCcCCeEEEEe-CCccEEEeeCCcccccccCcHHHHHHHHHHHHhcCCCCceEEEe--C--CEEEEEeccCccc
Confidence            34566677888774 566788886443222111134678888888854333 3344332  2  3689999988554

Members of this family are the ycfN gene product of Escherichia coli, now identified as the salvage enzyme thiamine kinase (thiK), and additional proteobacterial homologs taken to be orthologs with equivalent function.

>PRK09902 hypothetical protein; Provisional

Probab=96.86  E-value=0.036  Score=44.24  Aligned_cols=113  Identities=19%  Similarity=0.091  Sum_probs=70.5

Q ss_pred             eeeCceEEEEEEECCCcEEEEEEeccc-C-----hhHHHHHHHHHHHHHhCC--CCcccceeeEEEEC----CEEEEEEe
Q 047066          113 GRGGYGTVFLGSLSDNKAIAIKKSRIV-Y-----QSQIEQCINKVVVLSQIN--HRNVVGLLGCCLET----EVPLLVNE  180 (256)
Q Consensus       113 g~G~~g~V~~~~~~~~~~vavK~~~~~-~-----~~~~~~~~~E~~~l~~l~--h~niv~l~~~~~~~----~~~~lv~e  180 (256)
                      |.|+-+-|+.-.. +|..+-+|+.... .     +.....|.+|...+..+.  .-++.++.......    -..++|+|
T Consensus        27 ~rgG~SgV~r~~~-~g~~~ylKrq~nhl~~s~r~P~g~ptf~rE~~~L~~L~~~GvPVP~pvf~~~~k~~~~~rA~LVTe  105 (216)
T PRK09902         27 RRNGMSGVQCVER-NGKKLYVKRMTHHLFHSVRYPFGRPTIVREVAVIKELERAGVIVPKIVFGEAVKIEGEWRALLVTE  105 (216)
T ss_pred             CCCCcceEEEEEe-CCcEEEEEeccCcccccccCCCCchHHHHHHHHHHHHHHcCCCCCccceeeeeccCCceEEEEEEE
Confidence            3477777888766 4446888865421 1     234478999999999884  33355555222221    23778999


Q ss_pred             cCCC-CCC------------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCc--EEEEecCCcee
Q 047066          181 FVKL-PTI------------SWEVRIRIAAETA-------------EDIKSINILLDDNYT--TKVCDFGASKL  226 (256)
Q Consensus       181 ~~~~-~~l------------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~--~ki~DFGla~~  226 (256)
                      -+.+ .+|            +...+..+..+++             +|+.++||+++.++.  +++.||.-++.
T Consensus       106 ~L~g~~~L~~~l~~~~~~~~~~~~k~~il~~va~~ia~LH~~Gv~Hgdly~khIll~~~g~~~v~lIDlEk~r~  179 (216)
T PRK09902        106 DMAGFISIADWYAQHAVSPYSDEVRQAMLKAVALAFKKMHSVNRQHGCCYVRHIYVKTEGKAEAGFLDLEKSRR  179 (216)
T ss_pred             eCCCCccHHHHHhcCCcCCcchHHHHHHHHHHHHHHHHHHHCCCcCCCCCHhheeecCCCCeeEEEEEhhccch
Confidence            6654 222            2222223333333             499999999986666  99999987764

>PLN02876 acyl-CoA dehydrogenase

Probab=96.82  E-value=0.022  Score=55.00  Aligned_cols=77  Identities=16%  Similarity=0.242  Sum_probs=54.1

Q ss_pred             cceeeeeCceEEEEEEECCC---cEEEEEEecccC-hhHHHHHHHHHHHHHhCC-CCcc--cceeeEEEEC---CEEEEE
Q 047066          109 DRMIGRGGYGTVFLGSLSDN---KAIAIKKSRIVY-QSQIEQCINKVVVLSQIN-HRNV--VGLLGCCLET---EVPLLV  178 (256)
Q Consensus       109 ~~~lg~G~~g~V~~~~~~~~---~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~-h~ni--v~l~~~~~~~---~~~~lv  178 (256)
                      .+.++.|.+..+|+....++   ..+++|+..... ......+.+|..+++.+. |+++  .+++.+|.+.   +..++|
T Consensus        43 v~~l~gG~sn~ty~l~~~~~~~~~~~VLR~~p~~~~~~~~~~~~rE~~~l~~L~~~~~vpVP~v~~~~~d~~v~G~~flV  122 (822)
T PLN02876         43 VSQFGHGQSNPTFLLEVGNGGSVKRYVLRKKPPGKLLQSAHAVEREYQVLRALGEHTDVPVPKVYCLCTDASVIGTAFYI  122 (822)
T ss_pred             EEEeCCCCcCceEEEEECCCCcceeEEEEeCCCCccCccHHHHHHHHHHHHHHhhcCCCCCCcEEEEecCCCcCCCceEE
Confidence            35788898999998876543   366777654322 122356789999999995 6665  7777777654   468899


Q ss_pred             EecCCCC
Q 047066          179 NEFVKLP  185 (256)
Q Consensus       179 ~e~~~~~  185 (256)
                      |||+++.
T Consensus       123 ME~v~G~  129 (822)
T PLN02876        123 MEYLEGR  129 (822)
T ss_pred             EEecCCc
Confidence            9999774

>cd05157 ETNK_euk Ethanolamine kinase (ETNK) in eukaryotes

Probab=96.62  E-value=0.035  Score=44.91  Aligned_cols=70  Identities=11%  Similarity=0.061  Sum_probs=42.6

Q ss_pred             ceeeeeCceEEEEEEECC--CcEEEEEEecccChhHHHHHHHHHHHHHhCCCCc-ccceeeEEEECCEEEEEEecCCC
Q 047066          110 RMIGRGGYGTVFLGSLSD--NKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRN-VVGLLGCCLETEVPLLVNEFVKL  184 (256)
Q Consensus       110 ~~lg~G~~g~V~~~~~~~--~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~n-iv~l~~~~~~~~~~~lv~e~~~~  184 (256)
                      +.|..|-...+|+....+  +..+.+|........ .-...+|+.++..+...+ ..++++.+.  +  .+++||+++
T Consensus         4 ~~l~gG~tN~~~~v~~~~~~~~~~vlR~~~~~~~~-~~d~~~E~~~~~~l~~~gl~P~v~~~~~--~--~~l~e~i~G   76 (235)
T cd05157           4 KRFTGGITNKLVKVSNKEDNQDAVLVRVYGNKTEL-IIDRERELRIHKLLSKHGLAPKLYATFQ--N--GLIYEFIPG   76 (235)
T ss_pred             EEcCCcccceEEEEEcCCCCCCeEEEEEccCCccc-eecHHHHHHHHHHHHhCCCCCeEEEEeC--C--cEEEEeeCC
Confidence            356667777899888654  567888865432221 122346888888884333 344443322  2  479999877

ETNK is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major phospholipid, phosphatidylethanolamine (PtdEtn). Unlike ChoK, ETNK shows specific activity for its substrate, and displays negligible activity towards N-methylated derivatives of Etn. The Drosophila ETNK is implicated in development and neuronal function. Mammals contain two ETNK proteins, ETNK1 and ETNK2. ETNK1 selectively increases Etn uptake and phosphorylation, as well as PtdEtn synthesis. ETNK2 is found primarily in the liver and reproductive tissues. It plays a critical role in regulating placental hemostasis to support late embryo

>cd05153 HomoserineK_II Homoserine Kinase, type II

Probab=96.52  E-value=0.049  Score=45.73  Aligned_cols=74  Identities=15%  Similarity=0.089  Sum_probs=45.5

Q ss_pred             ceeeeeCceEEEEEEECCCcEEEEEEecccChhHHHHHHHHHHHHHhCCCC--cccceeeE------EEECCEEEEEEec
Q 047066          110 RMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHR--NVVGLLGC------CLETEVPLLVNEF  181 (256)
Q Consensus       110 ~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~--niv~l~~~------~~~~~~~~lv~e~  181 (256)
                      +.+..|....+|+.... +..+++|.....   .......|+.++..+.+.  .+.+++..      ....+..+.++++
T Consensus        20 ~~i~~G~~n~~y~v~~~-~~~~vLr~~~~~---~~~~~~~e~~~l~~L~~~g~~vp~~i~~~~g~~~~~~~~~~~~l~~~   95 (296)
T cd05153          20 EGISAGIENTNYFVTTD-SGRYVLTLFEKV---SAEELPFFLALLDHLAERGLPVPRPIADRDGEYLSELAGKPAALVEF   95 (296)
T ss_pred             ecccCccccceEEEEeC-CCcEEEEEcCCC---ChHhccHHHHHHHHHHHCCCCCCccccCCCCcEeeeeCCceEEEEEe
Confidence            45666766789988764 346888876542   224566788887777432  24444331      1234567899999


Q ss_pred             CCCCCC
Q 047066          182 VKLPTI  187 (256)
Q Consensus       182 ~~~~~l  187 (256)
                      ++|..+
T Consensus        96 i~G~~~  101 (296)
T cd05153          96 LAGEHL  101 (296)
T ss_pred             CCCCCC
Confidence            988543

Homoserine kinase is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of unusual homoserine kinases, from a subset of bacteria, which have a PK fold. These proteins do not bear any similarity to the GHMP family homoserine kinases present in most bacteria and eukaryotes. Homoserine kinase catalyzes the transfer of the gamma-phosphoryl group from ATP to L-homoserine producing L-homoserine phosphate, an intermediate in the production of the amino acids threonine, methionine, and isoleucine.

>COG1718 RIO1 Serine/threonine protein kinase involved in cell cycle control [Signal transduction mechanisms / Cell division and chromosome partitioning]

Probab=96.52  E-value=0.029  Score=45.77  Aligned_cols=114  Identities=18%  Similarity=0.156  Sum_probs=70.4

Q ss_pred             eeeeeCceEEEEEEECCCcEEEEEEecccChhH-------------------H-----HHHHHHHHHHHhCC--CCcccc
Q 047066          111 MIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQ-------------------I-----EQCINKVVVLSQIN--HRNVVG  164 (256)
Q Consensus       111 ~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~-------------------~-----~~~~~E~~~l~~l~--h~niv~  164 (256)
                      .|++|.-+.||+|...++..+|+|+.+......                   .     ....+|..-|.++.  +-.+.+
T Consensus        55 ~istGKEA~Vy~a~~~~~~~~avKiyr~~t~~fk~~~~Yi~gd~Rf~~~~~~rr~lv~~W~~kEf~NL~R~~eAGVrvP~  134 (268)
T COG1718          55 CISTGKEANVYLAETGDGRYVAVKIYRTSTSEFKRIRRYIQGDPRFRNSRSNRRKLVFAWARKEFRNLKRAYEAGVRVPE  134 (268)
T ss_pred             eecCCcceEEEeeccCCCceEEEEEEehhhhhhhhHHHHHhcChhhhcCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence            556677788999998789999999764321110                   0     12355666676663  333344


Q ss_pred             eeeEEEECCEEEEEEecCCCCCC--------C-----HHHHH-HH----------HHHHHhccCCCcEEEcCCCcEEEEe
Q 047066          165 LLGCCLETEVPLLVNEFVKLPTI--------S-----WEVRI-RI----------AAETAEDIKSINILLDDNYTTKVCD  220 (256)
Q Consensus       165 l~~~~~~~~~~~lv~e~~~~~~l--------~-----~~~~~-~~----------~~~i~rdlk~~NiLi~~~~~~ki~D  220 (256)
                      .+++..    -.++|||+.....        +     ..... .+          +.-+|-||+.=|||+. ++.+.|+|
T Consensus       135 Pi~~~~----nVLvMEfIg~~g~pAP~LkDv~~e~~e~~~~~~~~v~~~~~l~~~a~LVHgDLSEyNiL~~-~~~p~iID  209 (268)
T COG1718         135 PIAFRN----NVLVMEFIGDDGLPAPRLKDVPLELEEAEGLYEDVVEYMRRLYKEAGLVHGDLSEYNILVH-DGEPYIID  209 (268)
T ss_pred             ceeecC----CeEEEEeccCCCCCCCCcccCCcCchhHHHHHHHHHHHHHHHHHhcCcccccchhhheEEE-CCeEEEEE
Confidence            443322    3578999865321        1     11111 11          1223459999999999 88999999


Q ss_pred             cCCceecCC
Q 047066          221 FGASKLVPI  229 (256)
Q Consensus       221 FGla~~~~~  229 (256)
                      ||-|.....
T Consensus       210 ~~QaV~~~h  218 (268)
T COG1718         210 VSQAVTIDH  218 (268)
T ss_pred             CccccccCC
Confidence            999876543

>PF06293 Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family; InterPro: IPR010440 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=96.49  E-value=0.027  Score=44.91  Aligned_cols=84  Identities=14%  Similarity=0.130  Sum_probs=56.5

Q ss_pred             HHHHHHHHHHHhCC--CCcccceeeEEEECC----EEEEEEecCCCC-CCC----------HHHHHHHHHHHH-------
Q 047066          145 EQCINKVVVLSQIN--HRNVVGLLGCCLETE----VPLLVNEFVKLP-TIS----------WEVRIRIAAETA-------  200 (256)
Q Consensus       145 ~~~~~E~~~l~~l~--h~niv~l~~~~~~~~----~~~lv~e~~~~~-~l~----------~~~~~~~~~~i~-------  200 (256)
                      ....+|...+..|.  .=.....+++.....    ..++++|++++- +|.          ......+..+++       
T Consensus        56 ~ra~~E~~~~~~L~~~Gi~tP~pva~~~~r~~~~~~s~lite~l~~~~~L~~~~~~~~~~~~~~~~~ll~~l~~~i~~lH  135 (206)
T PF06293_consen   56 SRAKREWRNLQRLREAGIPTPEPVAYGERRKGGGYRSYLITEALPGAQDLRDLLQQWEQLDPSQRRELLRALARLIAKLH  135 (206)
T ss_pred             hHHHHHHHHHHHHHHcCCCCCcEEEEEEEcCCCceeEEEEEEeCCCcccHHHHHHhhcccchhhHHHHHHHHHHHHHHHH
Confidence            46788888887774  344556666666532    458899999873 332          122223333333       


Q ss_pred             ------hccCCCcEEEcCCC---cEEEEecCCceecC
Q 047066          201 ------EDIKSINILLDDNY---TTKVCDFGASKLVP  228 (256)
Q Consensus       201 ------rdlk~~NiLi~~~~---~~ki~DFGla~~~~  228 (256)
                            .|++++|||++.+.   .+.++||+-++...
T Consensus       136 ~~gi~H~Dl~~~NILv~~~~~~~~~~lIDld~~~~~~  172 (206)
T PF06293_consen  136 DAGIYHGDLNPSNILVDPDDGQYRFYLIDLDRMRFRP  172 (206)
T ss_pred             HCcCCCCCCCcccEEEeCCCCceeEEEEcchhceeCC
Confidence                  49999999999887   89999999887643

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents lipopolysaccharide kinases which are related to protein kinases IPR000719 from INTERPRO. This family includes waaP (rfaP) gene product is required for the addition of phosphate to O-4 of the first heptose residue of the lipopolysaccharide (LPS) inner core region. It has previously been shown that WaaP is necessary for resistance to hydrophobic and polycationic antimicrobials in E. coli and that it is required for virulence in invasive strains of Salmonella enterica [].; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0009103 lipopolysaccharide biosynthetic process, 0016020 membrane

>PRK05231 homoserine kinase; Provisional

Probab=96.45  E-value=0.21  Score=42.46  Aligned_cols=72  Identities=10%  Similarity=0.027  Sum_probs=40.6

Q ss_pred             ceeeeeCceEEEEEEECCCcEEEEEEecccChhHHHHHHHHHHHHHhCCC--Ccccceee------EEEECCEEEEEEec
Q 047066          110 RMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINH--RNVVGLLG------CCLETEVPLLVNEF  181 (256)
Q Consensus       110 ~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h--~niv~l~~------~~~~~~~~~lv~e~  181 (256)
                      +.++.|....+|.....++ .+++|.......   +....|..++..|..  -.+.+.+.      +....+..++++||
T Consensus        28 ~~l~~G~~n~~y~v~t~~g-~~vLK~~~~~~~---~~l~~~~~~l~~L~~~glpvP~~i~~~~G~~~~~~~g~~~~l~~~  103 (319)
T PRK05231         28 KGIAEGIENSNFFLTTTQG-EYVLTLFERLTA---EDLPFFLGLMQHLAARGVPVPAPVARRDGAALGELAGKPAAIVTF  103 (319)
T ss_pred             chhccccccceEEEEeCCC-cEEEEEeccCCh---HHhHHHHHHHHHHHHCCCCCCcceeCCCCCEeeeeCCEEEEEEEe
Confidence            4556666678898876555 678887652222   233345555555521  12333332      11235668899999


Q ss_pred             CCCC
Q 047066          182 VKLP  185 (256)
Q Consensus       182 ~~~~  185 (256)
                      ++|.
T Consensus       104 l~G~  107 (319)
T PRK05231        104 LEGK  107 (319)
T ss_pred             cCCC
Confidence            9874

>TIGR00938 thrB_alt homoserine kinase, Neisseria type

Probab=96.04  E-value=0.18  Score=42.70  Aligned_cols=73  Identities=11%  Similarity=-0.001  Sum_probs=42.2

Q ss_pred             cceeeeeCceEEEEEEECCCcEEEEEEecccChhHHHHHHHHHHHHHhCCC--CcccceeeEE------EECCEEEEEEe
Q 047066          109 DRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINH--RNVVGLLGCC------LETEVPLLVNE  180 (256)
Q Consensus       109 ~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h--~niv~l~~~~------~~~~~~~lv~e  180 (256)
                      .+.++.|....+|+....++ .+.+|..+....  .+....|..++..|..  -++.+++...      ...+..++++|
T Consensus        27 i~~~~~G~~n~~y~v~t~~~-~~vLK~~~~~~~--~~~i~~e~~~l~~L~~~g~pvp~~i~t~~g~~~~~~~g~~~~l~e  103 (307)
T TIGR00938        27 LKGIAEGVENSNYLLTTDVG-RYILTLYEKRVK--AEELPFFLALTTHLAARGLPVPKPVKSRDGRQLSTLAGKPACLVE  103 (307)
T ss_pred             ccccCCccccceEEEEeCCC-cEEEEEecCCCC--HHHHHHHHHHHHHHHHCCCCCCccccCCCCCeehhcCCeEEEEEE
Confidence            34566776678998876444 577786644221  2334456677666632  2233433311      12456789999


Q ss_pred             cCCC
Q 047066          181 FVKL  184 (256)
Q Consensus       181 ~~~~  184 (256)
                      |++|
T Consensus       104 ~i~G  107 (307)
T TIGR00938       104 FLQG  107 (307)
T ss_pred             eCCC
Confidence            9877

Homoserine kinase is required in the biosynthesis of threonine from aspartate.The member of this family from Pseudomonas aeruginosa was shown by direct assay and complementation to act specifically as a homoserine kinase.

>TIGR01767 MTRK 5-methylthioribose kinase

Probab=96.02  E-value=0.076  Score=45.96  Aligned_cols=72  Identities=17%  Similarity=0.206  Sum_probs=47.4

Q ss_pred             eeeeeCceEEEEEEECCC-cEEEEEEecc-------cChhHHHHHHHHHHHHHhCC--CCc-ccceeeEEEECCEEEEEE
Q 047066          111 MIGRGGYGTVFLGSLSDN-KAIAIKKSRI-------VYQSQIEQCINKVVVLSQIN--HRN-VVGLLGCCLETEVPLLVN  179 (256)
Q Consensus       111 ~lg~G~~g~V~~~~~~~~-~~vavK~~~~-------~~~~~~~~~~~E~~~l~~l~--h~n-iv~l~~~~~~~~~~~lv~  179 (256)
                      .+|.|...-||++..+++ +.++||+..+       ..+-..++..-|...|+...  -|. +.+++.  .+++...++|
T Consensus         2 EigdGnlN~VfrV~~~~g~~svIVKQAlp~vRv~g~~wpl~~~R~~~E~~~L~~~~~~~P~~vP~vy~--~D~e~~~~vM   79 (370)
T TIGR01767         2 EVGDGNLNLVFHVYDQEGDRAAIVKQALPYVRVVGESWPLTLDRARIESSALIRQGEHVPHLVPRIFH--FDTEMAVTVM   79 (370)
T ss_pred             cCCCCceEEEEEEEcCCCCeeEEEEEcCHHHhhcCCCCCCCccHHHHHHHHHHHhhccCccccCeEEE--EccccceehH
Confidence            468899899999997654 6899996432       12334456677888887763  243 344443  3445567899


Q ss_pred             ecCCC
Q 047066          180 EFVKL  184 (256)
Q Consensus       180 e~~~~  184 (256)
                      |+++.
T Consensus        80 EdL~~   84 (370)
T TIGR01767        80 EDLSH   84 (370)
T ss_pred             hhCcc
Confidence            99855

This enzyme is involved in the methionine salvage pathway in certain bacteria.

>PF03881 Fructosamin_kin: Fructosamine kinase; InterPro: IPR016477 Ketosamines derive from a non-enzymatic reaction between a sugar and a protein []

Probab=95.91  E-value=0.092  Score=44.16  Aligned_cols=74  Identities=12%  Similarity=0.092  Sum_probs=46.9

Q ss_pred             ccceeeeeCceEEEEEEECCCcEEEEEEecccChhHHHHHHHHHHHHHhCC---CCcccceeeEEEECCEEEEEEecCCC
Q 047066          108 YDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQIN---HRNVVGLLGCCLETEVPLLVNEFVKL  184 (256)
Q Consensus       108 ~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~---h~niv~l~~~~~~~~~~~lv~e~~~~  184 (256)
                      -.+.++-|....+|+.. .+++.+-+|.-..   .....|..|..-|+.|.   --.+.+++++....+..+++|||++.
T Consensus        21 ~~~~v~GG~i~~a~~~~-~~~~~~FvK~~~~---~~~~~f~~Ea~gL~~L~~~~~~~vP~vi~~G~~~~~~fLlle~l~~   96 (288)
T PF03881_consen   21 SIEPVSGGDINEAYRLD-TDGGSYFVKVNSE---SGRDMFEGEAEGLKALAEANPIRVPKVIAWGEYDDDAFLLLEFLEM   96 (288)
T ss_dssp             EEEEE--SSSSEEEEEE-TTS-EEEEEEEEG---GGCCHHHHHHHHHHHHCHTTTSBS--EEEEEE-SSCCEEEEE----
T ss_pred             eeEecCCCChhheEEEE-CCCccEEEEecCh---hhHHHHHHHHHHHHHHHhcCCCCCCeEEEEEeecCCceEEEEeecC
Confidence            33577878888898877 4778899997652   23356778888888773   45577888888877778999999977


Q ss_pred             C
Q 047066          185 P  185 (256)
Q Consensus       185 ~  185 (256)
                      +
T Consensus        97 ~   97 (288)
T PF03881_consen   97 G   97 (288)
T ss_dssp             -
T ss_pred             C
Confidence            5

Ketosamine-3-kinases (KT3K), of which fructosamine-3-kinase (FN3K) is the best-known example, catalyse the phosphorylation of the ketosamine moiety of glycated proteins. The instability of a phosphorylated ketosamine leads to its degradation, and KT3K is thus thought to be involved in protein repair []. The function of the prokaryotic members of this group has not been established. However, several lines of evidence indicate that they may function as fructosamine-3-kinases (FN3K). First, they are similar to characterised FN3K from mouse and human. Second, the Escherichia coli members are found in close proximity on the genome to fructose-6-phosphate kinase (PfkB). Last, FN3K activity has been found in a Anacystis montana (Gloeocapsa montana Kutzing 1843) [], indicating such activity-directly demonstrated in eukaryotes-is nonetheless not confined to eukaryotes. This family includes eukaryotic fructosamine-3-kinase enzymes [] which may initiate a process leading to the deglycation of fructoselysine and of glycated proteins and in the phosphorylation of 1-deoxy-1-morpholinofructose, fructoselysine, fructoseglycine, fructose and glycated lysozyme. The family also includes bacterial members that have not been characterised but probably have a similar or identical function. For additional information please see [].; PDB: 3JR1_B 3F7W_A.

>cd05155 APH_ChoK_like_1 Uncharacterized bacterial proteins with similarity to Aminoglycoside 3'-phosphotransferase (APH) and Choline kinase (ChoK) family members

Probab=95.89  E-value=0.056  Score=43.88  Aligned_cols=71  Identities=15%  Similarity=0.140  Sum_probs=41.0

Q ss_pred             ceeeeeCce-EEEEEEECCCcEEEEEEecccChhHHHHHHHHHHHHHhCCCC---cccceeeEEEEC---CEEEEEEecC
Q 047066          110 RMIGRGGYG-TVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHR---NVVGLLGCCLET---EVPLLVNEFV  182 (256)
Q Consensus       110 ~~lg~G~~g-~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~---niv~l~~~~~~~---~~~~lv~e~~  182 (256)
                      +.++.|+.. .||+.    +..+.+|..+..  .....+.+|...+..+...   .+..+++.....   ...+++|+++
T Consensus         3 ~~~~~gG~~n~vy~~----~~~~VlR~~~~~--~~~~~~~~E~~~l~~L~~~~~v~vP~~~~~~~~~~~~~~~~~l~~~i   76 (235)
T cd05155           3 EPVDSGGTDNATFRL----GDDMSVRLPSAA--GYAGQVRKEQRWLPRLAPHLPLPVPEPLGKGEPGEGYPWPWSVYRWL   76 (235)
T ss_pred             eeccCCCcccceEEc----CCceEEEcCCcc--chHHHHHHHHHHHHHHhccCCCCCCceeecCCCccCCCcceEEEEee
Confidence            356666665 48864    234666654331  1235688899999888532   334444433321   2458899998


Q ss_pred             CCCC
Q 047066          183 KLPT  186 (256)
Q Consensus       183 ~~~~  186 (256)
                      +|.+
T Consensus        77 ~G~~   80 (235)
T cd05155          77 EGET   80 (235)
T ss_pred             cCCC
Confidence            7733

The APH/ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates, such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides, and macrolides leads to their inactivation and to bacterial antibiotic resista

>PRK12396 5-methylribose kinase; Reviewed

Probab=95.86  E-value=0.055  Score=47.39  Aligned_cols=74  Identities=16%  Similarity=0.081  Sum_probs=49.4

Q ss_pred             cceeeeeCceEEEEEEEC-CCcEEEEEEecc------cChhHHHHHHHHHHHHHhCC--CCc-ccceeeEEEECCEEEEE
Q 047066          109 DRMIGRGGYGTVFLGSLS-DNKAIAIKKSRI------VYQSQIEQCINKVVVLSQIN--HRN-VVGLLGCCLETEVPLLV  178 (256)
Q Consensus       109 ~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~------~~~~~~~~~~~E~~~l~~l~--h~n-iv~l~~~~~~~~~~~lv  178 (256)
                      .+.||.|.-.-||++... +++.++||+-.+      ..+-..++..-|.+.|+...  -|. +.+++.  .+++...+|
T Consensus        34 ~~eigdGnlN~VfrV~~~~~~~svIVKQAlp~vRv~~swpL~~~R~~~E~~aL~~~~~~~P~~VP~vy~--~D~e~~~~v  111 (409)
T PRK12396         34 CKEIGDGNLNYVFRVWDEQKNISVIVKQAGDTARISDEFKLSTNRIRIESDVLQLEEELAPGLVPKVYL--FDSVMNCCV  111 (409)
T ss_pred             eeEcCCCceEEEEEEeeCCCCceEEEEeccHhhccCCCCCCChHHHHHHHHHHHHHHhhCCCcCCeEEE--ECcHHhhHH
Confidence            357899999999999974 367899996422      22344567778888888763  343 444443  334556788


Q ss_pred             EecCCC
Q 047066          179 NEFVKL  184 (256)
Q Consensus       179 ~e~~~~  184 (256)
                      ||+++.
T Consensus       112 MEdL~~  117 (409)
T PRK12396        112 MEDLSD  117 (409)
T ss_pred             HHhCcc
Confidence            888854

>PLN02756 S-methyl-5-thioribose kinase

Probab=94.97  E-value=0.35  Score=42.70  Aligned_cols=73  Identities=12%  Similarity=0.121  Sum_probs=48.6

Q ss_pred             cceeeeeCceEEEEEEECCCcEEEEEEeccc----C---hhHHHHHHHHHHHHHhCC---CCcccceeeEEEECCEEEEE
Q 047066          109 DRMIGRGGYGTVFLGSLSDNKAIAIKKSRIV----Y---QSQIEQCINKVVVLSQIN---HRNVVGLLGCCLETEVPLLV  178 (256)
Q Consensus       109 ~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~----~---~~~~~~~~~E~~~l~~l~---h~niv~l~~~~~~~~~~~lv  178 (256)
                      .+.+|.|..-.||+... ++..+.||+-...    .   +....+-..|...|+.+.   ..++.+++.++.  +...++
T Consensus        37 ~~eiggGn~N~VyrV~~-~~~svVVKqa~p~~r~vga~wpl~~~R~~~Ea~aL~~~~~~~p~~VPkVy~~de--d~~vlv  113 (418)
T PLN02756         37 IKEVGDGNLNFVYIVVS-SSGSFVIKQALPYIRCIGESWPMTKERAYFEATALREHGRLCPDHVPEVYHFDR--TMALIG  113 (418)
T ss_pred             EEEcCCCceeeEEEEEc-CCccEEEEeCCccccCCCccccCCccHHHHHHHHHHHhhhcCCCCCCeEEEECC--CCCEEE
Confidence            35788899889999886 4557889975411    1   123344555677666553   246777887777  446788


Q ss_pred             EecCCC
Q 047066          179 NEFVKL  184 (256)
Q Consensus       179 ~e~~~~  184 (256)
                      ||++++
T Consensus       114 ME~L~~  119 (418)
T PLN02756        114 MRYLEP  119 (418)
T ss_pred             EeecCC
Confidence            999966

>PLN02236 choline kinase

Probab=94.58  E-value=0.55  Score=40.58  Aligned_cols=72  Identities=13%  Similarity=0.116  Sum_probs=41.4

Q ss_pred             eeeeeCceEEEEEEECC-----CcEEEEEEecccChhHHHHHHHHHHHHHhCCCCcc-cceeeEEEECCEEEEEEecCCC
Q 047066          111 MIGRGGYGTVFLGSLSD-----NKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNV-VGLLGCCLETEVPLLVNEFVKL  184 (256)
Q Consensus       111 ~lg~G~~g~V~~~~~~~-----~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~ni-v~l~~~~~~~~~~~lv~e~~~~  184 (256)
                      .+..|-.-.+|+....+     ++.+.+|..........+ ..+|..+++.+...++ .++++.+...    .+.||+++
T Consensus        43 ~l~gGlTN~~y~v~~~~~~~~~~~~~v~Ri~g~~t~~~id-R~~E~~~~~~l~~~gl~P~~~~~~~~g----~v~efi~g  117 (344)
T PLN02236         43 PLKGAMTNEVFQIKWPTKEGNLGRKVLVRIYGEGVELFFD-RDDEIRTFECMSRHGQGPRLLGRFPNG----RVEEFIHA  117 (344)
T ss_pred             EcCCcccceeEEEEeCCCCCCCCCeEEEEEccCCCCeeec-hHHHHHHHHHHHHcCCCCceEEEECCc----eEEEeeCC
Confidence            34335556788876432     357888865443322222 3678888888854333 3555555322    47888877


Q ss_pred             CCC
Q 047066          185 PTI  187 (256)
Q Consensus       185 ~~l  187 (256)
                      .++
T Consensus       118 ~~l  120 (344)
T PLN02236        118 RTL  120 (344)
T ss_pred             CCC
Confidence            554

>COG3001 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.49  E-value=0.6  Score=37.94  Aligned_cols=71  Identities=13%  Similarity=0.132  Sum_probs=48.4

Q ss_pred             CCcEEEEEEecccChhHHHHHHHHHHHHHhC---CCCcccceeeEEEECCEEEEEEecCCCCCCCHHHHHHHHHHHH
Q 047066          127 DNKAIAIKKSRIVYQSQIEQCINKVVVLSQI---NHRNVVGLLGCCLETEVPLLVNEFVKLPTISWEVRIRIAAETA  200 (256)
Q Consensus       127 ~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l---~h~niv~l~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~i~  200 (256)
                      +..++-+|.-   .....+.|..|+.=|..+   +--++.+++.+-...+..++|+||++.+.++......+..++|
T Consensus        38 g~~~~FvK~n---~~~~~~~f~AEa~gL~~la~s~ti~VP~vi~~G~~~~~sylVle~L~~~~~d~~~~~~~GqqLA  111 (286)
T COG3001          38 GTDPFFVKCN---QREQLSMFTAEADGLELLARSNTITVPKVIAVGASRDHSYLVLEYLPTGPLDAHSAFILGQQLA  111 (286)
T ss_pred             CCcceEEEec---chhhHHHHHHHHHHHHHHHhcCCccccceEEecCCCCeeEEEEeeccCCCCCchhHHHHHHHHH
Confidence            5667888853   334557788888766666   3456778888888889999999999887765433333333333

>cd05156 ChoK_euk Choline Kinase (ChoK) in eukaryotes

Probab=94.27  E-value=0.57  Score=39.45  Aligned_cols=69  Identities=20%  Similarity=0.248  Sum_probs=39.9

Q ss_pred             eeeeeCceEEEEEEECC-------CcEEEEEEecccChhHHHHHHHHHHHHHhCCCCc-ccceeeEEEECCEEEEEEecC
Q 047066          111 MIGRGGYGTVFLGSLSD-------NKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRN-VVGLLGCCLETEVPLLVNEFV  182 (256)
Q Consensus       111 ~lg~G~~g~V~~~~~~~-------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~n-iv~l~~~~~~~~~~~lv~e~~  182 (256)
                      .+..|-.-.+|+....+       ++.+++|....... ...+..+|..++..+.... ..++++.+..    .+|+||+
T Consensus         5 ~l~gGltN~~y~v~~~~~~~~~~~~~~~vlRi~~~~~~-~~~~r~~E~~~~~~l~~~g~~P~~~~~~~~----~~v~e~i   79 (302)
T cd05156           5 KISGGLTNAVYKVSLPDEDALSDEPRKVLLRVYGQSVE-LLIDRERELVVFARLSERNLGPKLYGIFPN----GRIEEFI   79 (302)
T ss_pred             EecCcccceeEEEEcCCcccccCCCCeEEEEEecCCCc-ceechHHHHHHHHHHHhCCCCCceEEEeCC----Cchhhee
Confidence            34445555788877544       47788887544322 2234567888888874322 3345554431    3467877


Q ss_pred             CC
Q 047066          183 KL  184 (256)
Q Consensus       183 ~~  184 (256)
                      +|
T Consensus        80 ~G   81 (302)
T cd05156          80 PS   81 (302)
T ss_pred             CC
Confidence            65

The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC) and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. ChoK plays an important role in cell signaling pathways and the regulation of cell growth. Along with PCho, it is involved in malignant transformation through Ras oncogenes in various human cancer

>PF03109 ABC1: ABC1 family; InterPro: IPR004147 This entry includes ABC1 from yeast [] and AarF from Escherichia coli []

Probab=93.92  E-value=0.032  Score=40.38  Aligned_cols=30  Identities=20%  Similarity=0.254  Sum_probs=27.1

Q ss_pred             ceeeeeCceEEEEEEECCCcEEEEEEeccc
Q 047066          110 RMIGRGGYGTVFLGSLSDNKAIAIKKSRIV  139 (256)
Q Consensus       110 ~~lg~G~~g~V~~~~~~~~~~vavK~~~~~  139 (256)
                      +.|+.|+.|+||+|++++|+.||||..++.
T Consensus        17 ~PlasASiaQVh~a~l~~g~~VaVKV~rP~   46 (119)
T PF03109_consen   17 EPLASASIAQVHRARLKDGEEVAVKVQRPG   46 (119)
T ss_pred             chhhheehhhheeeeecccchhhhhhcchH
Confidence            589999999999999999999999987754

These proteins have a nuclear or mitochondrial subcellular location in eukaryotes. The exact molecular functions of these proteins is not clear, however yeast ABC1 suppresses a cytochrome b mRNA translation defect and is essential for the electron transfer in the bc 1 complex [] and E. coli AarF is required for ubiquinone production []. It has been suggested that members of the ABC1 family are novel chaperonins []. These proteins are unrelated to the ABC transporter proteins.

>PRK10593 hypothetical protein; Provisional

Probab=93.18  E-value=0.99  Score=38.12  Aligned_cols=77  Identities=13%  Similarity=0.033  Sum_probs=55.8

Q ss_pred             ccceeeeeCceEEEEEEECCCcEEEEEEecccChhHHHHHHHHHHHHHhCC-C--CcccceeeEEEE---CCEEEEEEec
Q 047066          108 YDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQIN-H--RNVVGLLGCCLE---TEVPLLVNEF  181 (256)
Q Consensus       108 ~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-h--~niv~l~~~~~~---~~~~~lv~e~  181 (256)
                      -.+.||.|..+.||.....++ .+.+|..+..  .....+..|...|+.+. +  -.+.++++.+..   .+..++|||+
T Consensus        18 ~~~~i~~G~~~~vy~~~~~~~-~~~~k~~~~~--~~~~~~~~Ea~~L~~L~~~~~vpVP~V~~~~~~~~~~g~~~LVmE~   94 (297)
T PRK10593         18 RVECISEQPYAALWALYDSQG-NPMPLMARSF--STPGVAQQEAWKLSMLARSGTVRMPTVYGVMTHEQSPGPDVLLLER   94 (297)
T ss_pred             eeeecCCccceeEEEEEcCCC-CEEEEEeccc--ccchHHHHHHHHHHHHccCCCCCcCcEEEEeccCCcCCCeEEEEec
Confidence            345899999999998876555 3555654321  12257889999999884 3  467888887754   3668999999


Q ss_pred             CCCCCC
Q 047066          182 VKLPTI  187 (256)
Q Consensus       182 ~~~~~l  187 (256)
                      +++.++
T Consensus        95 i~G~~~  100 (297)
T PRK10593         95 LRGVSV  100 (297)
T ss_pred             cCCEec
Confidence            999776

>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane

Probab=93.14  E-value=0.058  Score=38.95  Aligned_cols=29  Identities=3%  Similarity=-0.008  Sum_probs=15.6

Q ss_pred             ecccccchhhHHHHHHHHHHHHHHHhhhh
Q 047066           26 NFTSRCWHTLCGCAVGSSWLYSVLKKRNL   54 (256)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   54 (256)
                      .++++++++++++++.+++++++.||+|+
T Consensus        65 ~i~~Ii~gv~aGvIg~Illi~y~irR~~K   93 (122)
T PF01102_consen   65 AIIGIIFGVMAGVIGIILLISYCIRRLRK   93 (122)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHS-
T ss_pred             ceeehhHHHHHHHHHHHHHHHHHHHHHhc
Confidence            34556666666666655554444444443

Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.

>KOG0576 consensus Mitogen-activated protein kinase kinase kinase kinase (MAP4K), germinal center kinase family [Signal transduction mechanisms]

Probab=92.97  E-value=0.061  Score=49.52  Aligned_cols=127  Identities=14%  Similarity=0.036  Sum_probs=76.7

Q ss_pred             ceeeeeCceEEEEEEECCCcEEEEEEecccChhHHHHHHHHHHHHHhCCCCc-ccceeeEEEECCEEEEEEecCCCC--C
Q 047066          110 RMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRN-VVGLLGCCLETEVPLLVNEFVKLP--T  186 (256)
Q Consensus       110 ~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~n-iv~l~~~~~~~~~~~lv~e~~~~~--~  186 (256)
                      +-+++++++++++.+....+....+.+...     ....-++++|.+++||| .+..++-+...+..++.++++..+  .
T Consensus       248 h~fvK~altknpKkRptaeklL~h~fvs~~-----l~~rl~~eLLdK~n~P~~~v~~~~d~~~E~~~~i~~~i~s~~rs~  322 (829)
T KOG0576|consen  248 HNFVKGALTKNPKKRPTAEKLLQHPFVSQT-----LSRRLAIELLDKVNNPNPVVRYLEDYDGEDYLWIPMRICSTGRSS  322 (829)
T ss_pred             HHHHHHHhcCCCccCCChhhheeceeeccc-----hhhHHHHHHHHHccCCCCcccccccCCcccccchhhhhhcCCccc
Confidence            456788888888877433333334433222     33456889999999999 777777777788899999999886  2


Q ss_pred             CCHHHHHHHHH---H---HH-hc------------cCCCcEEEcCCCcEEEEecCCceecCCCCceeeeeeeecccc
Q 047066          187 ISWEVRIRIAA---E---TA-ED------------IKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTLGY  244 (256)
Q Consensus       187 l~~~~~~~~~~---~---i~-rd------------lk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~~~~Gt~~y  244 (256)
                      ........++.   +   +. ++            ..+.||+..+ +..|..||+.+..+....  ..+...+|+.+
T Consensus       323 ~~~~~~se~~~~~~~~~~~~r~et~~l~~l~~~~~~~~d~~l~s~-~~~~~~~~~v~~~L~~~~--~~~t~~~~~~~  396 (829)
T KOG0576|consen  323 ALEMTVSEIALEQYQFAYPLRKETRPLAELHSSYKVHRDNILGSE-EEVKLLDFAVPPQLTRTM--KPRTAIGTPEP  396 (829)
T ss_pred             cccCChhhHhhhhhhhhhhhhhhcccccccccccccCcccccccc-cccccccccCCcccCccc--ccccCCCCCCC
Confidence            11111111110   0   11 11            2233666655 578999999988775443  12333466665

>KOG1033 consensus eIF-2alpha kinase PEK/EIF2AK3 [Translation, ribosomal structure and biogenesis]

Probab=91.95  E-value=0.038  Score=49.22  Aligned_cols=70  Identities=21%  Similarity=0.450  Sum_probs=56.5

Q ss_pred             hcCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC-hhHHHHHHHHHHHHHhCCCCcccceeeEEEE
Q 047066          102 ATNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY-QSQIEQCINKVVVLSQINHRNVVGLLGCCLE  171 (256)
Q Consensus       102 ~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~  171 (256)
                      -..+++...++|.|+||.|+.+... ++..+|||.+.... .....+.++|+.-+.++.|++++++...|..
T Consensus        47 ~a~~~e~~~~~~~~g~~~~~~~~n~~d~~~~avkritlkn~e~s~~rvl~~~~s~a~feh~g~~~~~ha~~~  118 (516)
T KOG1033|consen   47 EANDFEPGQCLGRGGFGVVFSAQNKADENKYAVKRITLKNREESRSRVLREVSSLAEFEHPGIKRYFHAWYE  118 (516)
T ss_pred             hhccccccccccccCccccCCccccccchhhHHHHhcccchhhhhhhhhccccchhhhcccchhhheeceec
Confidence            3467888899999999999998865 45588999875443 4455678899999999999999998887764

>cd05152 MPH2' Macrolide 2'-Phosphotransferase (MPH2')

Probab=91.95  E-value=2.1  Score=35.76  Aligned_cols=25  Identities=28%  Similarity=0.516  Sum_probs=21.1

Q ss_pred             ccCCCcEEEcCCCc-EEEEecCCcee
Q 047066          202 DIKSINILLDDNYT-TKVCDFGASKL  226 (256)
Q Consensus       202 dlk~~NiLi~~~~~-~ki~DFGla~~  226 (256)
                      |+.|.|+|+++++. .-|.||+.+..
T Consensus       191 D~~~~Nilv~~~~~~~gviDWe~a~i  216 (276)
T cd05152         191 DLHPGHILIDEDARVTGLIDWTEAKV  216 (276)
T ss_pred             CCCCCcEEEeCCCCEEEEECcHhccc
Confidence            99999999997554 56999998875

MPH2' is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). MPH2' catalyzes the transfer of the gamma-phosphoryl group from ATP to the 2'-hydroxyl of macrolide antibiotics such as erythromycin, clarithromycin, and azithromycin, among others. Macrolides penetrate the bacterial cell and bind to ribosomes, where it interrupts protein elongation, leading ultimately to the demise of the bacterium. Phosphorylation of macrolides leads to their inactivation. Based on substrate specificity and amino acid sequence, MPH2' is divided into types I and II, encoded by mphA and mphB genes, respectively. MPH2'I inactivates 14-membered ring macrolides while MPH2'II inactivates both 14- and 16-membered ring macrolides. Enzymatic inactivation of macrolides has been reported

>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]

Probab=91.72  E-value=0.078  Score=30.01  Aligned_cols=18  Identities=11%  Similarity=0.097  Sum_probs=8.8

Q ss_pred             hHHHHHHHHHHHHHHHhh
Q 047066           35 LCGCAVGSSWLYSVLKKR   52 (256)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~   52 (256)
                      +++++++++++++.|||+
T Consensus        22 ~vI~~vl~~~l~~~~rR~   39 (40)
T PF08693_consen   22 GVIIIVLGAFLFFWYRRK   39 (40)
T ss_pred             HHHHHHHHHHhheEEecc
Confidence            444444445555555544

This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].

>PLN02421 phosphotransferase, alcohol group as acceptor/kinase

Probab=91.38  E-value=2.8  Score=35.98  Aligned_cols=25  Identities=24%  Similarity=0.311  Sum_probs=22.1

Q ss_pred             ccCCCcEEEcC-CCcEEEEecCCcee
Q 047066          202 DIKSINILLDD-NYTTKVCDFGASKL  226 (256)
Q Consensus       202 dlk~~NiLi~~-~~~~ki~DFGla~~  226 (256)
                      |+.+.|||+++ ++.++++||..|..
T Consensus       188 Dl~~~NiL~~~~~~~l~lID~EYag~  213 (330)
T PLN02421        188 DLLSGNLMLNEDEGKLYFIDFEYGSY  213 (330)
T ss_pred             CCCcccEEEeCCCCcEEEEcccccCC
Confidence            99999999975 57899999998875

>KOG2270 consensus Serine/threonine protein kinase involved in cell cycle control [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning]

Probab=91.00  E-value=4.2  Score=35.67  Aligned_cols=117  Identities=18%  Similarity=0.161  Sum_probs=73.8

Q ss_pred             ccceeeeeCceEEEEEEECCCcEEEEEEecc-------cCh------------------hHH-HHHHHHHHHHHhCCCCc
Q 047066          108 YDRMIGRGGYGTVFLGSLSDNKAIAIKKSRI-------VYQ------------------SQI-EQCINKVVVLSQINHRN  161 (256)
Q Consensus       108 ~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~-------~~~------------------~~~-~~~~~E~~~l~~l~h~n  161 (256)
                      +..+|..|.-+.||.+...+|..+|||+.+.       .+.                  ..+ -...+|+.-|.+++...
T Consensus       148 inGCiSTGKEANVYHat~~dG~~~AIKIYKTSILvFKDRdRYV~GEfRFRhgyck~NPRKMVk~WAEKE~RNLkRl~~aG  227 (520)
T KOG2270|consen  148 INGCISTGKEANVYHATEEDGSEFAIKIYKTSILVFKDRDRYVSGEFRFRHGYCKHNPRKMVKTWAEKEMRNLKRLNNAG  227 (520)
T ss_pred             cccccccCccceeEeeecCCCceEEEEEEeeeEEEEechhhhccceeeeecccccCCcHHHHHHHHHHHHHHHHHHHhcC
Confidence            4468899999999999988999999995421       000                  001 13456778888887777


Q ss_pred             ccceeeEEEECCEEEEEEecCCCCC----------CCHHHHH----------HH----HHHHHhccCCCcEEEcCCCcEE
Q 047066          162 VVGLLGCCLETEVPLLVNEFVKLPT----------ISWEVRI----------RI----AAETAEDIKSINILLDDNYTTK  217 (256)
Q Consensus       162 iv~l~~~~~~~~~~~lv~e~~~~~~----------l~~~~~~----------~~----~~~i~rdlk~~NiLi~~~~~~k  217 (256)
                      |...--+....  -.+||+|+....          ++.....          +.    |.-+|-||.-=|+|+ .+|.+.
T Consensus       228 IP~PePIlLk~--hVLVM~FlGrdgw~aPkLKd~~ls~~ka~~~Y~~~v~~MR~lY~~c~LVHADLSEfN~Ly-hdG~ly  304 (520)
T KOG2270|consen  228 IPCPEPILLKN--HVLVMEFLGRDGWAAPKLKDASLSTSKARELYQQCVRIMRRLYQKCRLVHADLSEFNLLY-HDGKLY  304 (520)
T ss_pred             CCCCCceeeec--ceEeeeeccCCCCcCcccccccCChHHHHHHHHHHHHHHHHHHHHhceeccchhhhhheE-ECCEEE
Confidence            65444333332  357899986522          2211111          11    122234999999998 556899


Q ss_pred             EEecCCceec
Q 047066          218 VCDFGASKLV  227 (256)
Q Consensus       218 i~DFGla~~~  227 (256)
                      |+|-+-+...
T Consensus       305 iIDVSQSVE~  314 (520)
T KOG2270|consen  305 IIDVSQSVEH  314 (520)
T ss_pred             EEEccccccC
Confidence            9998877654

>KOG2268 consensus Serine/threonine protein kinase [Signal transduction mechanisms; General function prediction only]

Probab=90.75  E-value=0.53  Score=40.37  Aligned_cols=117  Identities=15%  Similarity=0.146  Sum_probs=78.1

Q ss_pred             CCcccceeeeeCceEEEEEEECCCcEEEEEEecccC------------------hhH----HHHHHHHHHHHHhCC-C-C
Q 047066          105 NYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVY------------------QSQ----IEQCINKVVVLSQIN-H-R  160 (256)
Q Consensus       105 ~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~------------------~~~----~~~~~~E~~~l~~l~-h-~  160 (256)
                      -+.+.+.||-|.-+.||.+-...|.+.++|.-+...                  ..+    +-...+|...|+.|. | -
T Consensus        93 v~svGnqIGVGKESDIY~v~d~~G~~~~lK~HRLGRtSFR~Vk~kRDY~r~r~~~sWlyLSRlaa~kEfafmkaL~e~gf  172 (465)
T KOG2268|consen   93 VESVGNQIGVGKESDIYVVADEEGNPLILKLHRLGRTSFRNVKNKRDYLRKRKSGSWLYLSRLAATKEFAFMKALYERGF  172 (465)
T ss_pred             hhhhccccccccccceEEEecCCCCchhHHHHhhhhhhHHHhhhhhhhHhcCCccchhhhHHHHHHHHHHHHHHHHHcCC
Confidence            356778999999999999998889888888321100                  001    113467888888883 3 3


Q ss_pred             cccceeeEEEECCEEEEEEecCCCCCCCH-----------HHHHHHHHH------HHhccCCCcEEEcCCCcEEEEecCC
Q 047066          161 NVVGLLGCCLETEVPLLVNEFVKLPTISW-----------EVRIRIAAE------TAEDIKSINILLDDNYTTKVCDFGA  223 (256)
Q Consensus       161 niv~l~~~~~~~~~~~lv~e~~~~~~l~~-----------~~~~~~~~~------i~rdlk~~NiLi~~~~~~ki~DFGl  223 (256)
                      .+.+.+++    +.-++|||++.+-+|..           .....+...      ||.|..-=||+++++..++++||=-
T Consensus       173 pVPkpiD~----~RH~Vvmelv~g~Pl~~v~~v~d~~~ly~~lm~~Iv~la~~GlIHgDFNEFNimv~dd~~i~vIDFPQ  248 (465)
T KOG2268|consen  173 PVPKPIDH----NRHCVVMELVDGYPLRQVRHVEDPPTLYDDLMGLIVRLANHGLIHGDFNEFNIMVKDDDKIVVIDFPQ  248 (465)
T ss_pred             CCCCcccc----cceeeHHHhhcccceeeeeecCChHHHHHHHHHHHHHHHHcCceecccchheeEEecCCCEEEeechH
Confidence            34555544    34578899888855521           112223333      3359999999999999999999964


Q ss_pred             ce
Q 047066          224 SK  225 (256)
Q Consensus       224 a~  225 (256)
                      ..
T Consensus       249 mv  250 (465)
T KOG2268|consen  249 MV  250 (465)
T ss_pred             hh
Confidence            43

>KOG0606 consensus Microtubule-associated serine/threonine kinase and related proteins [Signal transduction mechanisms; General function prediction only]

Probab=90.52  E-value=0.029  Score=54.08  Aligned_cols=125  Identities=14%  Similarity=0.143  Sum_probs=78.1

Q ss_pred             hhcCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEec---ccChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEE
Q 047066          101 IATNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSR---IVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPL  176 (256)
Q Consensus       101 ~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~---~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~  176 (256)
                      ..-+.+.+.+-+-.|.++.++...-. .+...+.+...   .......+....+-.++-..+||.++...-.+.......
T Consensus       801 sS~d~~~i~~p~qS~sp~ss~p~~pa~sgh~~~~~v~~~ap~i~~~~~~s~r~~s~~~i~p~~P~v~~~~~s~~~rsP~~  880 (1205)
T KOG0606|consen  801 SSPDGFEITKPSQSGSPSSSFPASPAGSGHTRPSKVHGLAPKIRTNDYESIRSKSNILITPRSPAVVRSFPSFPCRSPLP  880 (1205)
T ss_pred             CCCccceecccccCCCCcccccCCccccccccchhhhccchhhccccccccCCccCccccCCCCceecccCCCCCCCCcc
Confidence            34456667777788999988877632 23222333211   111112233334444444455677776666666677889


Q ss_pred             EEEecCCCCCCCHHHH-----------------------HHHHHHHHhccCCCcEEEcCCCcEEEEecCCce
Q 047066          177 LVNEFVKLPTISWEVR-----------------------IRIAAETAEDIKSINILLDDNYTTKVCDFGASK  225 (256)
Q Consensus       177 lv~e~~~~~~l~~~~~-----------------------~~~~~~i~rdlk~~NiLi~~~~~~ki~DFGla~  225 (256)
                      ++++|+.++.+.....                       ++-....|+|++|.|.|...++..+++|||...
T Consensus       881 L~~~~~~~~~~~Skl~~~~~~saepaRs~i~~~vqs~e~L~s~~r~h~~~~p~~~l~~~~gh~~l~~~~t~~  952 (1205)
T KOG0606|consen  881 LVGHYLNGGDLPSKLHNSGCLSAEPARSPILERVQSLESLHSSLRKHRDLKPDSLLIAYDGHRPLTDFGTLS  952 (1205)
T ss_pred             hhhHHhccCCchhhhhcCCCcccccccchhHHHHhhhhccccchhhcccccccchhhcccCCcccCcccccc
Confidence            9999998776643311                       122224668999999999999999999998544

>COG3173 Predicted aminoglycoside phosphotransferase [General function prediction only]

Probab=90.11  E-value=6.2  Score=33.74  Aligned_cols=57  Identities=18%  Similarity=0.162  Sum_probs=36.2

Q ss_pred             CcEEEEEEec-ccChhHHHHHHHHHHHHHhCCC--CcccceeeEEEECC--EEEEEEecCCC
Q 047066          128 NKAIAIKKSR-IVYQSQIEQCINKVVVLSQINH--RNVVGLLGCCLETE--VPLLVNEFVKL  184 (256)
Q Consensus       128 ~~~vavK~~~-~~~~~~~~~~~~E~~~l~~l~h--~niv~l~~~~~~~~--~~~lv~e~~~~  184 (256)
                      ++.+.+.+-. ...........+|..+++.+.-  ..+...++.|....  .+|.+|+|+++
T Consensus        48 ~~~~vlR~P~~~~~~~~~~~~~re~~~i~~l~~~~vP~p~~~~~~~~~~~g~pf~v~~~veG  109 (321)
T COG3173          48 GQKYVLRKPPRGDPVESAHDEKREYRVIAALLDVDVPVPRAFGLCGEGYLGTPFYVMEWVEG  109 (321)
T ss_pred             CceEEEecCCccccchhhhHHHhHHHHHHHhcCCCCCCcccccccccCCCCCceEEEEEecc
Confidence            6667777221 1223344556778888887742  33445677777655  78999999988

>TIGR02906 spore_CotS spore coat protein, CotS family

Probab=89.92  E-value=11  Score=31.70  Aligned_cols=25  Identities=36%  Similarity=0.400  Sum_probs=21.0

Q ss_pred             HhccCCCcEEEcCCCcEEEEecCCce
Q 047066          200 AEDIKSINILLDDNYTTKVCDFGASK  225 (256)
Q Consensus       200 ~rdlk~~NiLi~~~~~~ki~DFGla~  225 (256)
                      |.|+.+.|++++. +.+.|.||+.+.
T Consensus       191 HgD~~~~Nil~~~-~~i~lIDfd~~~  215 (313)
T TIGR02906       191 HQDYAYHNILLKD-NEVYVIDFDYCT  215 (313)
T ss_pred             cCCCCcccEEEeC-CcEEEEECcccc
Confidence            3599999999988 578899999664

Members of this family include the spore coat proteins CotS and YtaA from Bacillus subtilis and, from other endospore-forming bacteria, homologs that are more closely related to these two than to the spore coat proteins YutH and YsxE. The CotS family is more broadly distributed than YutH or YsxE, but still is not universal among spore-formers.

>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]

Probab=88.76  E-value=0.11  Score=32.63  Aligned_cols=24  Identities=8%  Similarity=-0.103  Sum_probs=0.0

Q ss_pred             eeecccccchhhHHHHHHHHHHHH
Q 047066           24 FFNFTSRCWHTLCGCAVGSSWLYS   47 (256)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~   47 (256)
                      .+++++.+++.+++++++++++|+
T Consensus        12 aavIaG~Vvgll~ailLIlf~iyR   35 (64)
T PF01034_consen   12 AAVIAGGVVGLLFAILLILFLIYR   35 (64)
T ss_dssp             ------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444455555555555555444443

Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.

>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase

Probab=87.55  E-value=0.88  Score=25.65  Aligned_cols=20  Identities=20%  Similarity=0.414  Sum_probs=11.4

Q ss_pred             hHHHHHHHHHHHHHHHhhhh
Q 047066           35 LCGCAVGSSWLYSVLKKRNL   54 (256)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~   54 (256)
                      ++++.+++.++|..|..|++
T Consensus        19 lv~i~iva~~iYRKw~aRkr   38 (43)
T PF08114_consen   19 LVGIGIVALFIYRKWQARKR   38 (43)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            45555555666666665543

Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].

>PF02958 EcKinase: Ecdysteroid kinase; InterPro: IPR004119 This family includes proteins of unknown function

Probab=87.25  E-value=5.2  Score=33.43  Aligned_cols=25  Identities=24%  Similarity=0.307  Sum_probs=20.9

Q ss_pred             ccCCCcEEEcCC--C---cEEEEecCCcee
Q 047066          202 DIKSINILLDDN--Y---TTKVCDFGASKL  226 (256)
Q Consensus       202 dlk~~NiLi~~~--~---~~ki~DFGla~~  226 (256)
                      |+.+.|+|+..+  +   .+++.||-+++.
T Consensus       221 D~w~nNilf~~~~~g~~~~~~liDfQ~~~~  250 (294)
T PF02958_consen  221 DFWTNNILFKYDDDGKPIDVVLIDFQLARY  250 (294)
T ss_pred             ccCHHhEeEccccccccccceeeccccccC
Confidence            999999999654  3   699999988775

All known members of this group are proteins from drosophila and Caenorhabditis elegans.

>PRK10271 thiK thiamine kinase; Provisional

Probab=86.83  E-value=0.51  Score=36.98  Aligned_cols=26  Identities=12%  Similarity=0.120  Sum_probs=22.6

Q ss_pred             HhccCCCcEEEcCCCcEEEEecCCcee
Q 047066          200 AEDIKSINILLDDNYTTKVCDFGASKL  226 (256)
Q Consensus       200 ~rdlk~~NiLi~~~~~~ki~DFGla~~  226 (256)
                      |.|+.|.|+++++++ ++++||+.|..
T Consensus        81 H~D~~~~N~~~~~~~-~~lIDwe~a~~  106 (188)
T PRK10271         81 HMDVHAGNLVHSASG-LRLIDWEYAGD  106 (188)
T ss_pred             cCCCCCccEEEECCC-EEEEeCCcccC
Confidence            359999999998887 88999998874

>COG5072 ALK1 Serine/threonine kinase of the haspin family [Cell division and chromosome partitioning]

Probab=86.59  E-value=2.9  Score=36.58  Aligned_cols=25  Identities=32%  Similarity=0.473  Sum_probs=23.7

Q ss_pred             hccCCCcEEEcCCCcEEEEecCCcee
Q 047066          201 EDIKSINILLDDNYTTKVCDFGASKL  226 (256)
Q Consensus       201 rdlk~~NiLi~~~~~~ki~DFGla~~  226 (256)
                      ||+.-.||||+ +|++.|+||-++|.
T Consensus       346 rnlt~~niLId-~GnvtLIDfklsRl  370 (488)
T COG5072         346 RNLTLDNILID-EGNVTLIDFKLSRL  370 (488)
T ss_pred             ccccccceeee-cCceEEEEeeeeec
Confidence            69999999999 99999999999995

>KOG4258 consensus Insulin/growth factor receptor (contains protein kinase domain) [Signal transduction mechanisms]

Probab=86.56  E-value=0.32  Score=46.00  Aligned_cols=32  Identities=22%  Similarity=0.616  Sum_probs=28.3

Q ss_pred             cChHHHHhhcCCCcccceeeeeCceEEEEEEEC
Q 047066           94 FTAGELKIATNNYAYDRMIGRGGYGTVFLGSLS  126 (256)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~  126 (256)
                      +-.++|+..++ ....+.+|+|+||.||.|..+
T Consensus       985 yv~deWe~~r~-it~~relg~gsfg~Vy~g~~n 1016 (1025)
T KOG4258|consen  985 YVPDEWEVSRE-ITLGRELGQGSFGMVYEGNAN 1016 (1025)
T ss_pred             CChhHHHHHHH-HhhhhhhccCccceEEEecCC
Confidence            66789999988 889999999999999998753

>PF01633 Choline_kinase: Choline/ethanolamine kinase; InterPro: IPR002573 Choline kinase, (ATP:choline phosphotransferase, 2

Probab=86.14  E-value=0.54  Score=37.37  Aligned_cols=26  Identities=27%  Similarity=0.425  Sum_probs=18.9

Q ss_pred             hccCCCcEEE-cCCCcEEEEecCCcee
Q 047066          201 EDIKSINILL-DDNYTTKVCDFGASKL  226 (256)
Q Consensus       201 rdlk~~NiLi-~~~~~~ki~DFGla~~  226 (256)
                      .|+.|.|||+ +.++.++++||..|..
T Consensus       148 nDl~~~Nil~~~~~~~~~lIDfEya~~  174 (211)
T PF01633_consen  148 NDLNPGNILINNKDGEVKLIDFEYAGY  174 (211)
T ss_dssp             S--SGGGEEETSSSSCEEE--GTT-EE
T ss_pred             ccCccccEEeccCCCeEEEecHHHHhh
Confidence            4999999999 8889999999998874

7.1.32 from EC) belongs to the choline/ethanolamine kinase family. Ethanolamine and choline are major membrane phospholipids, in the form of glycerophosphoethanolamine and glycerophosphocholine. Ethanolamine is also a component of the glycosylphosphatidylinositol (GPI) anchor, which is necessary for cell-surface protein attachment []. The de novo synthesis of these phospholipids begins with the creation of phosphoethanolamine and phosphocholine by ethanolamine and choline kinases in the first step of the CDP-ethanolamine pathway [, ]. There are two putative choline/ethanolamine kinases (C/EKs) in the Trypanosoma brucei genome. Ethanolamine kinase has no choline kinase activity [] and its activity is inhibited by ADP []. Inositol supplementation represses ethanolamine kinase, decreasing the incorporation of ethanolamine into the CDP-ethanolamine pathway and into phosphatidylethanolamine and phosphatidylcholine []. ; GO: 0016773 phosphotransferase activity, alcohol group as acceptor; PDB: 3C5I_A 2IG7_A 3LQ3_A 3FEG_A 2QG7_E 3FI8_A 1NW1_A 3MES_A 3G15_A 2CKP_B ....

>PRK11768 serine/threonine protein kinase; Provisional

Probab=85.78  E-value=21  Score=30.51  Aligned_cols=66  Identities=12%  Similarity=-0.046  Sum_probs=39.4

Q ss_pred             eEEEEEEECCCcEEEEEEecccChhHHHHHHHHHHHHHhCCC--Ccccce---ee--EEEECCEEEEEEecCCC
Q 047066          118 GTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINH--RNVVGL---LG--CCLETEVPLLVNEFVKL  184 (256)
Q Consensus       118 g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h--~niv~l---~~--~~~~~~~~~lv~e~~~~  184 (256)
                      -.||+....++..+++|..+... ....+...|...+..|..  -.++..   -|  ....++..+.++++++|
T Consensus        39 N~vy~v~~~~~~~~vlKv~r~~~-~~~~~i~~E~~~l~~L~~~gipv~~p~~~~G~~~~~~~g~~~~l~~~~~G  111 (325)
T PRK11768         39 NRVYQFGDEDGRRVVAKFYRPER-WSDAQILEEHAFALELAEAEIPVVAPLAFNGQTLHEHQGFRFALFPRRGG  111 (325)
T ss_pred             ceEEEEecCCCCEEEEEEcCccc-CCHHHHHHHHHHHHHHHHCCCCCCCCccCCCCEEEEECCEEEEEEeeeCC
Confidence            46898887777788888765322 233556678877776631  112221   12  12234567788888866

>TIGR02904 spore_ysxE spore coat protein YsxE

Probab=85.06  E-value=22  Score=29.99  Aligned_cols=26  Identities=12%  Similarity=0.218  Sum_probs=23.2

Q ss_pred             hccCCCcEEEcCCCcEEEEecCCcee
Q 047066          201 EDIKSINILLDDNYTTKVCDFGASKL  226 (256)
Q Consensus       201 rdlk~~NiLi~~~~~~ki~DFGla~~  226 (256)
                      .|+.+.|+|+++++.+-+.||..+..
T Consensus       201 gD~~~~Nvl~~~~~~~~iIDfd~~~~  226 (309)
T TIGR02904       201 GKLSLSHFLYDETRGGYFINFEKASF  226 (309)
T ss_pred             CCCcHHhEEEcCCCCEEEEEhhhccc
Confidence            49999999999999999999988764

Members of this family are homologs of the Bacillus subtilis spore coat protein CotS. Members of this family, designated YsxE, are found only in the family Bacillaceae, from among the endospore-forming members of the Firmicutes branch of the Bacteria. As a rule, the ysxE gene is found immediately downstream of spoVID, a gene necessary for spore coat assembly. The protein has been shown to be part of the spore coat.

>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane

Probab=82.03  E-value=0.28  Score=35.43  Aligned_cols=23  Identities=17%  Similarity=0.210  Sum_probs=11.2

Q ss_pred             hHHHHHHHHHHHHHHHhhhhccc
Q 047066           35 LCGCAVGSSWLYSVLKKRNLIGL   57 (256)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~   57 (256)
                      +++++++++++.+++||+.....
T Consensus        77 vIg~Illi~y~irR~~Kk~~~~~   99 (122)
T PF01102_consen   77 VIGIILLISYCIRRLRKKSSSDV   99 (122)
T ss_dssp             HHHHHHHHHHHHHHHS-------
T ss_pred             HHHHHHHHHHHHHHHhccCCCCC
Confidence            56666677777777777776544

Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.

>PHA00451 protein kinase

Probab=81.91  E-value=2.6  Score=34.78  Aligned_cols=106  Identities=12%  Similarity=0.128  Sum_probs=0.0

Q ss_pred             ceeeeeCceEEEEEEECCCcEEEEEEecccChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEecCCCCCCCH
Q 047066          110 RMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEFVKLPTISW  189 (256)
Q Consensus       110 ~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~~~~l~~  189 (256)
                      +.||.|.|+-.|.-..-.|+.+.|=--+..+......|.+=     .-..+.|..++.+-...+-.-+|++++..-.-..
T Consensus        71 ~~LGNGHFSAAy~H~lLPgrVIKVGFKKEDSGAAYtAFCRM-----~QGR~GIPnVY~VaRHaGCYTVVLD~L~~C~r~~  145 (362)
T PHA00451         71 NLLGNGHFSAAYSHELLPGRVIKVGFKKEDSGAAYTAFCRM-----HQGRAGIPNVYHVARHAGCYTVVLDYLNPCYRES  145 (362)
T ss_pred             HHhcCcchhhHhhcccCCCeeEEeccccccccHHHHHHHHH-----hcCCCCCccHHHHHHhcCceEEehhhcccccccc


Q ss_pred             HHHHHHHHHHHh------------------------------------ccCCCcEEEcCCCcEEEEe
Q 047066          190 EVRIRIAAETAE------------------------------------DIKSINILLDDNYTTKVCD  220 (256)
Q Consensus       190 ~~~~~~~~~i~r------------------------------------dlk~~NiLi~~~~~~ki~D  220 (256)
                      ...-.-...+++                                    |..+.||+.++++.+.|+|
T Consensus       146 nd~h~~ya~~a~~~~e~~~d~~~~~~~~~~FIETCk~IRkFF~GIASFDmHSGNiMf~~~g~p~ITD  212 (362)
T PHA00451        146 NDVHHHYAAAAYIIIECCSDAAEEYPGSQEFIETCKMIRKFFYGIASFDMHSGNIMFDQDGVPYITD  212 (362)
T ss_pred             chHHHHHHHHHHHHHhccCCHHhccCCchhHHHHHHHHHHHHhhhhcccccCCceeeCCCCCeEecC

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	256
2qkw_B	321	Structural Basis For Activation Of Plant Immunity B		1e-17
3tl8_A	349	The Avrptob-Bak1 Complex Reveals Two Structurally S		4e-17
3hgk_A	327	Crystal Structure Of Effect Protein Avrptob Complex		9e-17
3uim_A	326	Structural Basis For The Impact Of Phosphorylation		3e-16
4f1o_A	287	Crystal Structure Of The L1180t Mutant Roco4 Kinase		8e-11
4f0f_A	287	Crystal Structure Of The Roco4 Kinase Domain Bound		1e-10
2nry_A	307	Crystal Structure Of Irak-4 Length = 307		1e-10
2nru_A	307	Crystal Structure Of Irak-4 Length = 307		3e-10
2oib_A	301	Crystal Structure Of Irak4 Kinase Domain Apo Form L		3e-10
4f1m_A	287	Crystal Structure Of The G1179s Roco4 Kinase Domain		6e-10
2o8y_A	298	Apo Irak4 Kinase Domain Length = 298		3e-09
3a4p_A	319	Human C-Met Kinase Domain Complexed With 6-Benzylox		4e-09
3lq8_A	302	Structure Of The Kinase Domain Of C-Met Bound To Xl		4e-09
3f66_A	298	Human C-Met Kinase In Complex With Quinoxaline Inhi		4e-09
3qti_A	314	C-Met Kinase In Complex With Nvp-Bvu972 Length = 31		4e-09
4gg5_A	319	Crystal Structure Of Cmet In Complex With Novel Inh		5e-09
3dkc_A	317	Sgx Clone 5698a65kfg1h1 Length = 317		5e-09
3c1x_A	373	Crystal Structure Of The Tyrosine Kinase Domain Of		5e-09
3q6u_A	308	Structure Of The Apo Met Receptor Kinase In The Dua		5e-09
3i5n_A	309	Crystal Structure Of C-Met With Triazolopyridazine		5e-09
2wgj_A	306	X-Ray Structure Of Pf-02341066 Bound To The Kinase		5e-09
2wd1_A	292	Human C-Met Kinase In Complex With Azaindole Inhibi		5e-09
2g15_A	318	Structural Characterization Of Autoinhibited C-Met		5e-09
2rfn_A	310	X-ray Structure Of C-met With Inhibitor. Length = 3		5e-09
3cth_A	314	Crystal Structure Of The Tyrosine Kinase Domain Of		5e-09
1r0p_A	312	Crystal Structure Of The Tyrosine Kinase Domain Of		5e-09
3q6w_A	307	Structure Of Dually-phosphorylated Met Receptor Kin		5e-09
3dkg_A	317	Sgx Clone 5698a109kfg1h1 Length = 317		5e-09
3pls_A	298	Ron In Complex With Ligand Amp-Pnp Length = 298		1e-08
3t9t_A	267	Crystal Structure Of Btk Mutant (F435t,K596r) Compl		9e-08
4hct_A	269	Crystal Structure Of Itk In Complex With Compound 5		1e-07
3miy_A	266	X-Ray Crystal Structure Of Itk Complexed With Sunit		3e-07
3v5j_A	266	Crystal Structure Of Interleukin-2 Inducible T-Cell		4e-07
1sm2_A	264	Crystal Structure Of The Phosphorylated Interleukin		4e-07
3qgw_A	286	Crystal Structure Of Itk Kinase Bound To An Inhibit		2e-06
4eqm_A	294	Structural Analysis Of Staphylococcus Aureus Serine		3e-06
3bkb_A	377	Crystal Structure Of Human Feline Sarcoma Viral Onc		3e-06
3cd3_A	377	Crystal Structure Of Phosphorylated Human Feline Sa		3e-06
3ppz_A	309	Crystal Structure Of Ctr1 Kinase Domain In Complex		5e-06
3p86_A	309	Crystal Structure Of Ctr1 Kinase Domain Mutant D676		2e-05
3e5a_A	268	Crystal Structure Of Aurora A In Complex With Vx-68		2e-05
1ua2_A	346	Crystal Structure Of Human Cdk7 Length = 346		2e-05
3d14_A	272	Crystal Structure Of Mouse Aurora A (Asn186->gly, L		3e-05
2qoc_A	344	Human Epha3 Kinase Domain, Phosphorylated, Amp-Pnp		3e-05
3dzq_A	361	Human Epha3 Kinase Domain In Complex With Inhibitor		3e-05
3qbn_A	281	Structure Of Human Aurora A In Complex With A Diami		3e-05
2j50_A	280	Structure Of Aurora-2 In Complex With Pha-739358 Le		3e-05
2rei_A	318	Kinase Domain Of Human Ephrin Type-a Receptor 7 (ep		4e-05
2xru_A	280	Aurora-A T288e Complexed With Pha-828300 Length = 2		5e-05
4g9r_A	307	B-Raf V600e Kinase Domain Bound To A Type Ii Dihydr		5e-05
3d4q_A	307	Pyrazole-Based Inhibitors Of B-Raf Kinase Length =		6e-05
1mq4_A	272	Crystal Structure Of Aurora-A Protein Kinase Length		6e-05
2w1d_A	275	Structure Determination Of Aurora Kinase In Complex		6e-05
2qoi_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f:		6e-05
3o50_A	267	Crystal Structure Of Benzamide 9 Bound To Auroraa L		6e-05
2qoo_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f:		6e-05
2qof_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f		6e-05
2qod_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y602f		6e-05
2gsf_A	373	The Human Epha3 Receptor Tyrosine Kinase And Juxtam		6e-05
2dwb_A	285	Aurora-A Kinase Complexed With Amppnp Length = 285		7e-05
3gvu_A	292	The Crystal Structure Of Human Abl2 In Complex With		7e-05
3fxx_A	371	Human Epha3 Kinase And Juxtamembrane Region Bound T		7e-05
2x6d_A	285	Aurora-A Bound To An Inhibitor Length = 285		7e-05
2xng_A	283	Structure Of Aurora-A Bound To A Selective Imidazop		7e-05
2wqe_A	262	Structure Of S155r Aurora-A Somatic Mutant Length =		7e-05
3ha6_A	268	Crystal Structure Of Aurora A In Complex With Tpx2		8e-05
3daj_A	272	Crystal Structure Of Aurora A Complexed With An Inh		9e-05
1muo_A	297	Crystal Structure Of Aurora-2, An Oncogenic Serine-		1e-04
3coh_A	268	Crystal Structure Of Aurora-A In Complex With A Pen		1e-04
3pyy_A	298	Discovery And Characterization Of A Cell-Permeable,		1e-04
2c6e_A	283	Aurora A Kinase Activated Mutant (T287d) In Complex		1e-04
2qob_A	344	Human Epha3 Kinase Domain, Base Structure Length =		1e-04
2hz0_A	270	Abl Kinase Domain In Complex With Nvp-Aeg082 Length		1e-04
2hzi_A	277	Abl Kinase Domain In Complex With Pd180970 Length =		1e-04
3qri_A	277	The Crystal Structure Of Human Abl1 Kinase Domain I		1e-04
2qoh_A	288	Crystal Structure Of Abl Kinase Bound With Ppy-a Le		1e-04
2hyy_A	273	Human Abl Kinase Domain In Complex With Imatinib (S		1e-04
3fdn_A	279	Structure-Based Drug Design Of Novel Aurora Kinase		1e-04
2j4z_A	306	Structure Of Aurora-2 In Complex With Pha-680626 Le		1e-04
2c6d_A	275	Aurora A Kinase Activated Mutant (T287d) In Complex		1e-04
3lau_A	287	Crystal Structure Of Aurora2 Kinase In Complex With		1e-04
2p0c_A	313	Catalytic Domain Of The Proto-Oncogene Tyrosine-Pro		1e-04
2g1t_A	287	A Src-Like Inactive Conformation In The Abl Tyrosin		1e-04
1fpu_A	293	Crystal Structure Of Abl Kinase Domain In Complex W		1e-04
3oxz_A	284	Crystal Structure Of Abl Kinase Domain Bound With A		1e-04
2gqg_A	278	X-Ray Crystal Structure Of Dasatinib (Bms-354825) B		1e-04
2qok_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f:		1e-04
2hiw_A	287	Crystal Structure Of Inactive Conformation Abl Kina		1e-04
3dk3_A	293	Crystal Structure Of Mutant Abl Kinase Domain In Co		1e-04
3nrm_A	283	Imidazo[1,2-A]pyrazine-Based Aurora Kinase Inhibito		1e-04
2g2f_A	287	A Src-Like Inactive Conformation In The Abl Tyrosin		1e-04
2f4j_A	287	Structure Of The Kinase Domain Of An Imatinib-Resis		1e-04
2e2b_A	293	Crystal Structure Of The C-Abl Kinase Domain In Com		1e-04
3r21_A	271	Design, Synthesis, And Biological Evaluation Of Pyr		2e-04
2qol_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596:y		2e-04
3q96_A	282	B-Raf Kinase Domain In Complex With A Tetrahydronap		2e-04
2w1c_A	275	Structure Determination Of Aurora Kinase In Complex		2e-04
3oez_A	286	Crystal Structure Of The L317i Mutant Of The Chicke		2e-04
3h0y_A	268	Aurora A In Complex With A Bisanilinopyrimidine Len		2e-04
2qon_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f:		2e-04
2fb8_A	281	Structure Of The B-Raf Kinase Domain Bound To Sb-59		2e-04
3rp9_A	458	Crystal Structure Of The Apo Mapk From Toxoplasma G		2e-04
3g6h_A	286	Src Thr338ile Inhibited In The Dfg-Asp-Out Conforma		2e-04
2qo7_A	373	Human Epha3 Kinase And Juxtamembrane Region, Dephos		2e-04
3dqw_A	286	C-Src Kinase Domain Thr338ile Mutant In Complex Wit		2e-04
3ii5_A	306	The Complex Of Wild-Type B-Raf With Pyrazolo Pyrimi		2e-04
4dbn_A	284	Crystal Structure Of The Kinase Domain Of Human B-R		2e-04
3idp_A	300	B-Raf V600e Kinase Domain In Complex With An Aminoi		2e-04
3txo_A	353	Pkc Eta Kinase In Complex With A Naphthyridine Leng		2e-04
3og7_A	289	B-Raf Kinase V600e Oncogenic Mutant In Complex With		2e-04
4fk3_A	292	B-Raf Kinase V600e Oncogenic Mutant In Complex With		2e-04
3unz_A	279	Aurora A In Complex With Rpm1679 Length = 279		2e-04
1ol5_A	282	Structure Of Aurora-A 122-403, Phosphorylated On Th		3e-04
3kul_B	325	Kinase Domain Of Human Ephrin Type-A Receptor 8 (Ep		3e-04
3c4c_A	280	B-Raf Kinase In Complex With Plx4720 Length = 280		3e-04
2xne_A	272	Structure Of Aurora-A Bound To An Imidazopyrazine I		3e-04
1yi6_A	276	C-Term Tail Segment Of Human Tyrosine Kinase (258-5		3e-04
3nie_A	429	Crystal Structure Of Pf11_0147 Length = 429		3e-04
1y57_A	452	Structure Of Unphosphorylated C-Src In Complex With		3e-04
2z60_A	288	Crystal Structure Of The T315i Mutant Of Abl Kinase		3e-04
3qrj_A	277	The Crystal Structure Of Human Abl1 Kinase Domain T		3e-04
3oy3_A	284	Crystal Structure Of Abl T315i Mutant Kinase Domain		3e-04
2qq7_A	286	Crystal Structure Of Drug Resistant Src Kinase Doma		3e-04
1ol6_A	282	Structure Of Unphosphorylated D274n Mutant Of Auror		3e-04
1uwj_A	276	The Complex Of Mutant V599e B-raf And Bay439006 Len		3e-04
3dk7_A	277	Crystal Structure Of Mutant Abl Kinase Domain In Co		3e-04
1fmk_A	452	Crystal Structure Of Human Tyrosine-Protein Kinase		4e-04
4h58_A	275	Braf In Complex With Compound 3 Length = 275		4e-04
3svv_A	286	Crystal Structure Of T338c C-Src Covalently Bound T		4e-04
2oiq_A	286	Crystal Structure Of Chicken C-Src Kinase Domain In		4e-04
1ksw_A	452	Structure Of Human C-Src Tyrosine Kinase (Thr338gly		4e-04
2hwo_A	286	Crystal Structure Of Src Kinase Domain In Complex W		4e-04
3d7u_B	277	Structural Basis For The Recognition Of C-Src By It		4e-04
1f3m_C	297	Crystal Structure Of Human SerineTHREONINE KINASE P		4e-04
3u4w_A	275	Src In Complex With Dna-Templated Macrocyclic Inhib		4e-04
2dq7_X	283	Crystal Structure Of Fyn Kinase Domain Complexed Wi		4e-04
2v7a_A	286	Crystal Structure Of The T315i Abl Mutant In Comple		4e-04
1yoj_A	283	Crystal Structure Of Src Kinase Domain Length = 283		4e-04
3kul_A	325	Kinase Domain Of Human Ephrin Type-A Receptor 8 (Ep		4e-04
3dk6_A	293	Crystal Structure Of Mutant Abl Kinase Domain In Co		4e-04
3qup_A	323	Inhibitor Bound Structure Of The Kinase Domain Of T		5e-04
2h8h_A	535	Src Kinase In Complex With A Quinazoline Inhibitor		5e-04
1yol_A	283	Crystal Structure Of Src Kinase Domain In Complex W		5e-04
2ptk_A	453	Chicken Src Tyrosine Kinase Length = 453		5e-04
3pg1_A	362	Map Kinase Lmampk10 From Leishmania Major (1.95 Ang		5e-04
2bdf_A	279	Src Kinase In Complex With Inhibitor Ap23451 Length		5e-04
1opl_A	537	Structural Basis For The Auto-Inhibition Of C-Abl T		5e-04
3uib_A	362	Map Kinase Lmampk10 From Leishmania Major In Comple		5e-04
2fo0_A	495	Organization Of The Sh3-Sh2 Unit In Active And Inac		5e-04
1opk_A	495	Structural Basis For The Auto-Inhibition Of C-Abl T		5e-04
1uwh_A	276	The Complex Of Wild Type B-Raf And Bay439006 Length		5e-04
3kxz_A	287	The Complex Crystal Structure Of Lck With A Probe M		6e-04
2bmc_A	306	Aurora-2 T287d T288d Complexed With Pha-680632 Leng		7e-04
3omv_A	307	Crystal Structure Of C-Raf (Raf-1) Length = 307		7e-04
3oct_A	265	Crystal Structure Of Bruton's Tyrosine Kinase Mutan		8e-04
3geq_A	286	Structural Basis For The Chemical Rescue Of Src Kin		9e-04
3ocs_A	271	Crystal Structure Of Bruton's Tyrosine Kinase In Co		9e-04

>pdb|2QKW|B Chain B, Structural Basis For Activation Of Plant Immunity By Bacterial Effector Protein Avrpto Length = 321

Iteration: 1
 Score = 87.0 bits (214), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 60/175 (34%), Positives = 92/175 (52%), Gaps = 28/175 (16%)
Query: 98  ELKIATNNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQI 157
           +L+ ATNN+ +  +IG G +G V+ G L D   +A+K+        IE+   ++  LS  
Sbjct: 33  DLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPESSQGIEEFETEIETLSFC 92
Query: 158 NHRNVVGLLGCCLETEVPLLVNEFVK------------LPT--ISWEVRIRIAAETA--- 200
            H ++V L+G C E    +L+ ++++            LPT  +SWE R+ I    A   
Sbjct: 93  RHPHLVSLIGFCDERNEMILIYKYMENGNLKRHLYGSDLPTMSMSWEQRLEICIGAARGL 152
Query: 201 ----------EDIKSINILLDDNYTTKVCDFGASKL-VPIDETQLSTMVQGTLGY 244
                      D+KSINILLD+N+  K+ DFG SK    +D+T L  +V+GTLGY
Sbjct: 153 HYLHTRAIIHRDVKSINILLDENFVPKITDFGISKKGTELDQTHLXXVVKGTLGY 207

>pdb|3TL8|A Chain A, The Avrptob-Bak1 Complex Reveals Two Structurally Similar Kinaseinteracting Domains In A Single Type Iii Effector Length = 349

Iteration: 1
 Score = 84.7 bits (208), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 57/196 (29%), Positives = 96/196 (48%), Gaps = 35/196 (17%)
Query: 92  KIFTAGELKIATNNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIE-QCINK 150
           K F+  EL++A++N++   ++GRGG+G V+ G L+D   +A+K+ +       E Q   +
Sbjct: 26  KRFSLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERXQGGELQFQTE 85
Query: 151 VVVLSQINHRNVVGLLGCCLETEVPLLVNEFV--------------KLPTISWEVRIRIA 196
           V ++S   HRN++ L G C+     LLV  ++                P + W  R RIA
Sbjct: 86  VEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPESQPPLDWPKRQRIA 145
Query: 197 AETA----------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQG 240
             +A                 D+K+ NILLD+ +   V DFG +KL+   +  +   V+G
Sbjct: 146 LGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDXHVXXAVRG 205
Query: 241 TLGY----YLHTSQGT 252
           T+G+    YL T + +
Sbjct: 206 TIGHIAPEYLSTGKSS 221

>pdb|3HGK|A Chain A, Crystal Structure Of Effect Protein Avrptob Complexed With Kinase Pto Length = 327

Iteration: 1
 Score = 83.6 bits (205), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 59/175 (33%), Positives = 91/175 (52%), Gaps = 28/175 (16%)
Query: 98  ELKIATNNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQI 157
           +L+ ATNN+ +  +IG G +G V+ G L D   +A+K+        IE+   ++  LS  
Sbjct: 33  DLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPESSQGIEEFETEIETLSFC 92
Query: 158 NHRNVVGLLGCCLETEVPLLVNEFVK------------LPT--ISWEVRIRIAAETA--- 200
            H ++V L+G C E    +L+ ++++            LPT  +SWE R+ I    A   
Sbjct: 93  RHPHLVSLIGFCDERNEMILIYKYMENGNLKRHLYGSDLPTMSMSWEQRLEICIGAARGL 152
Query: 201 ----------EDIKSINILLDDNYTTKVCDFGASKL-VPIDETQLSTMVQGTLGY 244
                      D+KSINILLD+N+  K+ DFG SK    + +T L  +V+GTLGY
Sbjct: 153 HYLHTRAIIHRDVKSINILLDENFVPKITDFGISKKGTELGQTHLXXVVKGTLGY 207

>pdb|3UIM|A Chain A, Structural Basis For The Impact Of Phosphorylation On Plant Receptor- Like Kinase Bak1 Activation Length = 326

Iteration: 1
 Score = 82.0 bits (201), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 56/196 (28%), Positives = 94/196 (47%), Gaps = 35/196 (17%)
Query: 92  KIFTAGELKIATNNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIE-QCINK 150
           K F+  EL++A++N+    ++GRGG+G V+ G L+D   +A+K+ +       E Q   +
Sbjct: 18  KRFSLRELQVASDNFXNKNILGRGGFGKVYKGRLADGXLVAVKRLKEERTQGGELQFQTE 77
Query: 151 VVVLSQINHRNVVGLLGCCLETEVPLLVNEFV--------------KLPTISWEVRIRIA 196
           V ++S   HRN++ L G C+     LLV  ++                P + W  R RIA
Sbjct: 78  VEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPESQPPLDWPKRQRIA 137
Query: 197 AETA----------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQG 240
             +A                 D+K+ NILLD+ +   V DFG +KL+   +  +   V+G
Sbjct: 138 LGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDXHVXXAVRG 197
Query: 241 TLGY----YLHTSQGT 252
            +G+    YL T + +
Sbjct: 198 XIGHIAPEYLSTGKSS 213

>pdb|4F1O|A Chain A, Crystal Structure Of The L1180t Mutant Roco4 Kinase Domain From D. Discoideum Bound To Appcp Length = 287

Iteration: 1
 Score = 63.9 bits (154), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 59/195 (30%), Positives = 86/195 (44%), Gaps = 48/195 (24%)
Query: 101 IATNNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIE-QCINK-------VV 152
           +A N   Y++ IG+GG+G V  G L  +K++   KS I+  S+ E + I K       V 
Sbjct: 16  LADNEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVF 75
Query: 153 VLSQINHRNVVGLLGCCLETEVPLLVNEFV-----------KLPTISWEVRIRIAAETA- 200
           ++S +NH N+V L G  L    P +V EFV           K   I W V++R+  + A 
Sbjct: 76  IMSNLNHPNIVKLYG--LMHNPPRMVMEFVPCGDLYHRLLDKAHPIKWSVKLRLMLDIAL 133
Query: 201 --------------EDIKSINIL---LDDNYT--TKVCDFGASKLVPIDETQLSTMVQGT 241
                          D++S NI    LD+N     KV DFG S+       Q    V G 
Sbjct: 134 GIEYMQNQNPPIVHRDLRSPNIFLQSLDENAPVCAKVADFGTSQ-------QSVHSVSGL 186
Query: 242 LGYYLHTSQGTLNKE 256
           LG +   +  T+  E
Sbjct: 187 LGNFQWMAPETIGAE 201

>pdb|4F0F|A Chain A, Crystal Structure Of The Roco4 Kinase Domain Bound To Appcp From D. Discoideum Length = 287

Iteration: 1
 Score = 63.5 bits (153), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 59/195 (30%), Positives = 86/195 (44%), Gaps = 48/195 (24%)
Query: 101 IATNNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIE-QCINK-------VV 152
           +A N   Y++ IG+GG+G V  G L  +K++   KS I+  S+ E + I K       V 
Sbjct: 16  LADNEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVF 75
Query: 153 VLSQINHRNVVGLLGCCLETEVPLLVNEFV-----------KLPTISWEVRIRIAAETA- 200
           ++S +NH N+V L G  L    P +V EFV           K   I W V++R+  + A 
Sbjct: 76  IMSNLNHPNIVKLYG--LMHNPPRMVMEFVPCGDLYHRLLDKAHPIKWSVKLRLMLDIAL 133
Query: 201 --------------EDIKSINIL---LDDNYT--TKVCDFGASKLVPIDETQLSTMVQGT 241
                          D++S NI    LD+N     KV DFG S+       Q    V G 
Sbjct: 134 GIEYMQNQNPPIVHRDLRSPNIFLQSLDENAPVCAKVADFGLSQ-------QSVHSVSGL 186
Query: 242 LGYYLHTSQGTLNKE 256
           LG +   +  T+  E
Sbjct: 187 LGNFQWMAPETIGAE 201

>pdb|2NRY|A Chain A, Crystal Structure Of Irak-4 Length = 307

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 55/188 (29%), Positives = 89/188 (47%), Gaps = 38/188 (20%)
Query: 94  FTAGELKIATNNYAYDRM------IGRGGYGTVFLGSLSDNKAIAIKK----SRIVYQSQ 143
           F+  ELK  TNN+    +      +G GG+G V+ G + +N  +A+KK      I  +  
Sbjct: 15  FSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV-NNTTVAVKKLAAMVDITTEEL 73
Query: 144 IEQCINKVVVLSQINHRNVVGLLG--------CCLETEVP--LLVNEFVKL---PTISWE 190
            +Q   ++ V+++  H N+V LLG        C +   +P   L++    L   P +SW 
Sbjct: 74  KQQFDQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDGTPPLSWH 133
Query: 191 VRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVP-IDETQLST 236
           +R +IA   A              DIKS NILLD+ +T K+ DFG ++      +T + +
Sbjct: 134 MRCKIAQGAANGINFLHENHHIHRDIKSANILLDEAFTAKISDFGLARASEKFAQTVMXS 193
Query: 237 MVQGTLGY 244
            + GT  Y
Sbjct: 194 RIVGTTAY 201

>pdb|2NRU|A Chain A, Crystal Structure Of Irak-4 Length = 307

Iteration: 1
 Score = 62.4 bits (150), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 55/188 (29%), Positives = 88/188 (46%), Gaps = 38/188 (20%)
Query: 94  FTAGELKIATNNYAYDRM------IGRGGYGTVFLGSLSDNKAIAIKK----SRIVYQSQ 143
           F+  ELK  TNN+    +      +G GG+G V+ G + +N  +A+KK      I  +  
Sbjct: 15  FSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV-NNTTVAVKKLAAMVDITTEEL 73
Query: 144 IEQCINKVVVLSQINHRNVVGLLG--------CCLETEVP--LLVNEFVKL---PTISWE 190
            +Q   ++ V+++  H N+V LLG        C +   +P   L++    L   P +SW 
Sbjct: 74  KQQFDQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDGTPPLSWH 133
Query: 191 VRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVP-IDETQLST 236
           +R +IA   A              DIKS NILLD+ +T K+ DFG ++      +T +  
Sbjct: 134 MRCKIAQGAANGINFLHENHHIHRDIKSANILLDEAFTAKISDFGLARASEKFAQTVMXX 193
Query: 237 MVQGTLGY 244
            + GT  Y
Sbjct: 194 RIVGTTAY 201

>pdb|2OIB|A Chain A, Crystal Structure Of Irak4 Kinase Domain Apo Form Length = 301

Iteration: 1
 Score = 62.0 bits (149), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 81/168 (48%), Gaps = 37/168 (22%)
Query: 94  FTAGELKIATNNYAYDRM------IGRGGYGTVFLGSLSDNKAIAIKK----SRIVYQSQ 143
           F+  ELK  TNN+    +      +G GG+G V+ G + +N  +A+KK      I  +  
Sbjct: 9   FSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV-NNTTVAVKKLAAMVDITTEEL 67
Query: 144 IEQCINKVVVLSQINHRNVVGLLG--------CCLETEVP--LLVNEFVKL---PTISWE 190
            +Q   ++ V+++  H N+V LLG        C +   +P   L++    L   P +SW 
Sbjct: 68  KQQFDQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDGTPPLSWH 127
Query: 191 VRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASK 225
           +R +IA   A              DIKS NILLD+ +T K+ DFG ++
Sbjct: 128 MRCKIAQGAANGINFLHENHHIHRDIKSANILLDEAFTAKISDFGLAR 175

>pdb|4F1M|A Chain A, Crystal Structure Of The G1179s Roco4 Kinase Domain Bound To Appcp From D. Discoideum Length = 287

Iteration: 1
 Score = 61.2 bits (147), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 58/195 (29%), Positives = 85/195 (43%), Gaps = 48/195 (24%)
Query: 101 IATNNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIE-QCINK-------VV 152
           +A N   Y++ IG+GG+G V  G L  +K++   KS I+  S+ E + I K       V 
Sbjct: 16  LADNEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVF 75
Query: 153 VLSQINHRNVVGLLGCCLETEVPLLVNEFV-----------KLPTISWEVRIRIAAETA- 200
           ++S +NH N+V L G  L    P +V EFV           K   I W V++R+  + A 
Sbjct: 76  IMSNLNHPNIVKLYG--LMHNPPRMVMEFVPCGDLYHRLLDKAHPIKWSVKLRLMLDIAL 133
Query: 201 --------------EDIKSINIL---LDDNYT--TKVCDFGASKLVPIDETQLSTMVQGT 241
                          D++S NI    LD+N     KV DF  S+       Q    V G 
Sbjct: 134 GIEYMQNQNPPIVHRDLRSPNIFLQSLDENAPVCAKVADFSLSQ-------QSVHSVSGL 186
Query: 242 LGYYLHTSQGTLNKE 256
           LG +   +  T+  E
Sbjct: 187 LGNFQWMAPETIGAE 201

>pdb|2O8Y|A Chain A, Apo Irak4 Kinase Domain Length = 298

Iteration: 1
 Score = 58.9 bits (141), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 51/169 (30%), Positives = 77/169 (45%), Gaps = 39/169 (23%)
Query: 94  FTAGELKIATNNYAYDRMI-------GRGGYGTVFLGSLSDNKAIAIKK----SRIVYQS 142
           F+  ELK  TNN+  +R I       G GG+G V+ G + +N  +A+KK      I  + 
Sbjct: 6   FSFYELKNVTNNFD-ERPISVGGNKXGEGGFGVVYKGYV-NNTTVAVKKLAAMVDITTEE 63
Query: 143 QIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEFVK-------------LPTISW 189
             +Q   ++ V ++  H N+V LLG   + +   LV  +                P +SW
Sbjct: 64  LKQQFDQEIKVXAKCQHENLVELLGFSSDGDDLCLVYVYXPNGSLLDRLSCLDGTPPLSW 123
Query: 190 EVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASK 225
             R +IA   A              DIKS NILLD+ +T K+ DFG ++
Sbjct: 124 HXRCKIAQGAANGINFLHENHHIHRDIKSANILLDEAFTAKISDFGLAR 172

>pdb|3A4P|A Chain A, Human C-Met Kinase Domain Complexed With 6-Benzyloxyquinoline Inhibitor Length = 319

Iteration: 1
 Score = 58.2 bits (139), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 71/148 (47%), Gaps = 30/148 (20%)
Query: 108 YDRMIGRGGYGTVFLGSLSDNKA----IAIKK-SRIVYQSQIEQCINKVVVLSQINHRNV 162
           ++ +IGRG +G V+ G+L DN       A+K  +RI    ++ Q + + +++   +H NV
Sbjct: 39  FNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNV 98
Query: 163 VGLLGCCLETE-VPLLVNEFVKLPTISWEVRIRIAAETAE-------------------- 201
           + LLG CL +E  PL+V  ++K   +   +R      T +                    
Sbjct: 99  LSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKFLASKK 158
Query: 202 ----DIKSINILLDDNYTTKVCDFGASK 225
               D+ + N +LD+ +T KV DFG ++
Sbjct: 159 FVHRDLAARNCMLDEKFTVKVADFGLAR 186

>pdb|3LQ8|A Chain A, Structure Of The Kinase Domain Of C-Met Bound To Xl880 (Gsk1 Length = 302

Iteration: 1
 Score = 58.2 bits (139), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 71/148 (47%), Gaps = 30/148 (20%)
Query: 108 YDRMIGRGGYGTVFLGSLSDNKA----IAIKK-SRIVYQSQIEQCINKVVVLSQINHRNV 162
           ++ +IGRG +G V+ G+L DN       A+K  +RI    ++ Q + + +++   +H NV
Sbjct: 32  FNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNV 91
Query: 163 VGLLGCCLETE-VPLLVNEFVKLPTISWEVRIRIAAETAE-------------------- 201
           + LLG CL +E  PL+V  ++K   +   +R      T +                    
Sbjct: 92  LSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKYLASKK 151
Query: 202 ----DIKSINILLDDNYTTKVCDFGASK 225
               D+ + N +LD+ +T KV DFG ++
Sbjct: 152 FVHRDLAARNCMLDEKFTVKVADFGLAR 179

>pdb|3F66|A Chain A, Human C-Met Kinase In Complex With Quinoxaline Inhibitor Length = 298

Iteration: 1
 Score = 58.2 bits (139), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 71/148 (47%), Gaps = 30/148 (20%)
Query: 108 YDRMIGRGGYGTVFLGSLSDNKA----IAIKK-SRIVYQSQIEQCINKVVVLSQINHRNV 162
           ++ +IGRG +G V+ G+L DN       A+K  +RI    ++ Q + + +++   +H NV
Sbjct: 29  FNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNV 88
Query: 163 VGLLGCCLETE-VPLLVNEFVKLPTISWEVRIRIAAETAE-------------------- 201
           + LLG CL +E  PL+V  ++K   +   +R      T +                    
Sbjct: 89  LSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKYLASKK 148
Query: 202 ----DIKSINILLDDNYTTKVCDFGASK 225
               D+ + N +LD+ +T KV DFG ++
Sbjct: 149 FVHRDLAARNCMLDEKFTVKVADFGLAR 176

>pdb|3QTI|A Chain A, C-Met Kinase In Complex With Nvp-Bvu972 Length = 314

Iteration: 1
 Score = 58.2 bits (139), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 71/148 (47%), Gaps = 30/148 (20%)
Query: 108 YDRMIGRGGYGTVFLGSLSDNKA----IAIKK-SRIVYQSQIEQCINKVVVLSQINHRNV 162
           ++ +IGRG +G V+ G+L DN       A+K  +RI    ++ Q + + +++   +H NV
Sbjct: 34  FNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNV 93
Query: 163 VGLLGCCLETE-VPLLVNEFVKLPTISWEVRIRIAAETAE-------------------- 201
           + LLG CL +E  PL+V  ++K   +   +R      T +                    
Sbjct: 94  LSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKFLASKK 153
Query: 202 ----DIKSINILLDDNYTTKVCDFGASK 225
               D+ + N +LD+ +T KV DFG ++
Sbjct: 154 FVHRDLAARNCMLDEKFTVKVADFGLAR 181

>pdb|4GG5|A Chain A, Crystal Structure Of Cmet In Complex With Novel Inhibitor Length = 319

Iteration: 1
 Score = 58.2 bits (139), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 71/148 (47%), Gaps = 30/148 (20%)
Query: 108 YDRMIGRGGYGTVFLGSLSDNKA----IAIKK-SRIVYQSQIEQCINKVVVLSQINHRNV 162
           ++ +IGRG +G V+ G+L DN       A+K  +RI    ++ Q + + +++   +H NV
Sbjct: 53  FNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNV 112
Query: 163 VGLLGCCLETE-VPLLVNEFVKLPTISWEVRIRIAAETAE-------------------- 201
           + LLG CL +E  PL+V  ++K   +   +R      T +                    
Sbjct: 113 LSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKYLASKK 172
Query: 202 ----DIKSINILLDDNYTTKVCDFGASK 225
               D+ + N +LD+ +T KV DFG ++
Sbjct: 173 FVHRDLAARNCMLDEKFTVKVADFGLAR 200

>pdb|3DKC|A Chain A, Sgx Clone 5698a65kfg1h1 Length = 317

Iteration: 1
 Score = 58.2 bits (139), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 71/148 (47%), Gaps = 30/148 (20%)
Query: 108 YDRMIGRGGYGTVFLGSLSDNKA----IAIKK-SRIVYQSQIEQCINKVVVLSQINHRNV 162
           ++ +IGRG +G V+ G+L DN       A+K  +RI    ++ Q + + +++   +H NV
Sbjct: 35  FNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNV 94
Query: 163 VGLLGCCLETE-VPLLVNEFVKLPTISWEVRIRIAAETAE-------------------- 201
           + LLG CL +E  PL+V  ++K   +   +R      T +                    
Sbjct: 95  LSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKFLASKK 154
Query: 202 ----DIKSINILLDDNYTTKVCDFGASK 225
               D+ + N +LD+ +T KV DFG ++
Sbjct: 155 FVHRDLAARNCMLDEKFTVKVADFGLAR 182

>pdb|3C1X|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The Hepatocyte Growth Factor Receptor C-Met In Complex With A Pyrrolotriazine Based Inhibitor Length = 373

Iteration: 1
 Score = 58.2 bits (139), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 71/148 (47%), Gaps = 30/148 (20%)
Query: 108 YDRMIGRGGYGTVFLGSLSDNKA----IAIKK-SRIVYQSQIEQCINKVVVLSQINHRNV 162
           ++ +IGRG +G V+ G+L DN       A+K  +RI    ++ Q + + +++   +H NV
Sbjct: 93  FNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNV 152
Query: 163 VGLLGCCLETE-VPLLVNEFVKLPTISWEVRIRIAAETAE-------------------- 201
           + LLG CL +E  PL+V  ++K   +   +R      T +                    
Sbjct: 153 LSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKFLASKK 212
Query: 202 ----DIKSINILLDDNYTTKVCDFGASK 225
               D+ + N +LD+ +T KV DFG ++
Sbjct: 213 FVHRDLAARNCMLDEKFTVKVADFGLAR 240

>pdb|3Q6U|A Chain A, Structure Of The Apo Met Receptor Kinase In The Dually-Phosphorylated, Activated State Length = 308

Iteration: 1
 Score = 58.2 bits (139), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 71/148 (47%), Gaps = 30/148 (20%)
Query: 108 YDRMIGRGGYGTVFLGSLSDNKA----IAIKK-SRIVYQSQIEQCINKVVVLSQINHRNV 162
           ++ +IGRG +G V+ G+L DN       A+K  +RI    ++ Q + + +++   +H NV
Sbjct: 34  FNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNV 93
Query: 163 VGLLGCCLETE-VPLLVNEFVKLPTISWEVRIRIAAETAE-------------------- 201
           + LLG CL +E  PL+V  ++K   +   +R      T +                    
Sbjct: 94  LSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKYLASKK 153
Query: 202 ----DIKSINILLDDNYTTKVCDFGASK 225
               D+ + N +LD+ +T KV DFG ++
Sbjct: 154 FVHRDLAARNCMLDEKFTVKVADFGLAR 181

>pdb|3I5N|A Chain A, Crystal Structure Of C-Met With Triazolopyridazine Inhibitor 13 Length = 309

Iteration: 1
 Score = 58.2 bits (139), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 71/148 (47%), Gaps = 30/148 (20%)
Query: 108 YDRMIGRGGYGTVFLGSLSDNKA----IAIKK-SRIVYQSQIEQCINKVVVLSQINHRNV 162
           ++ +IGRG +G V+ G+L DN       A+K  +RI    ++ Q + + +++   +H NV
Sbjct: 33  FNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNV 92
Query: 163 VGLLGCCLETE-VPLLVNEFVKLPTISWEVRIRIAAETAE-------------------- 201
           + LLG CL +E  PL+V  ++K   +   +R      T +                    
Sbjct: 93  LSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKYLASKK 152
Query: 202 ----DIKSINILLDDNYTTKVCDFGASK 225
               D+ + N +LD+ +T KV DFG ++
Sbjct: 153 FVHRDLAARNCMLDEKFTVKVADFGLAR 180

>pdb|2WGJ|A Chain A, X-Ray Structure Of Pf-02341066 Bound To The Kinase Domain Of C-Met Length = 306

Iteration: 1
 Score = 58.2 bits (139), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 71/148 (47%), Gaps = 30/148 (20%)
Query: 108 YDRMIGRGGYGTVFLGSLSDNKA----IAIKK-SRIVYQSQIEQCINKVVVLSQINHRNV 162
           ++ +IGRG +G V+ G+L DN       A+K  +RI    ++ Q + + +++   +H NV
Sbjct: 31  FNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNV 90
Query: 163 VGLLGCCLETE-VPLLVNEFVKLPTISWEVRIRIAAETAE-------------------- 201
           + LLG CL +E  PL+V  ++K   +   +R      T +                    
Sbjct: 91  LSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKYLASKK 150
Query: 202 ----DIKSINILLDDNYTTKVCDFGASK 225
               D+ + N +LD+ +T KV DFG ++
Sbjct: 151 FVHRDLAARNCMLDEKFTVKVADFGLAR 178

>pdb|2WD1|A Chain A, Human C-Met Kinase In Complex With Azaindole Inhibitor Length = 292

Iteration: 1
 Score = 58.2 bits (139), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 71/148 (47%), Gaps = 30/148 (20%)
Query: 108 YDRMIGRGGYGTVFLGSLSDNKA----IAIKK-SRIVYQSQIEQCINKVVVLSQINHRNV 162
           ++ +IGRG +G V+ G+L DN       A+K  +RI    ++ Q + + +++   +H NV
Sbjct: 26  FNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNV 85
Query: 163 VGLLGCCLETE-VPLLVNEFVKLPTISWEVRIRIAAETAE-------------------- 201
           + LLG CL +E  PL+V  ++K   +   +R      T +                    
Sbjct: 86  LSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKYLASKK 145
Query: 202 ----DIKSINILLDDNYTTKVCDFGASK 225
               D+ + N +LD+ +T KV DFG ++
Sbjct: 146 FVHRDLAARNCMLDEKFTVKVADFGLAR 173

>pdb|2G15|A Chain A, Structural Characterization Of Autoinhibited C-Met Kinase Length = 318

Iteration: 1
 Score = 58.2 bits (139), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 71/148 (47%), Gaps = 30/148 (20%)
Query: 108 YDRMIGRGGYGTVFLGSLSDNKA----IAIKK-SRIVYQSQIEQCINKVVVLSQINHRNV 162
           ++ +IGRG +G V+ G+L DN       A+K  +RI    ++ Q + + +++   +H NV
Sbjct: 52  FNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNV 111
Query: 163 VGLLGCCLETE-VPLLVNEFVKLPTISWEVRIRIAAETAE-------------------- 201
           + LLG CL +E  PL+V  ++K   +   +R      T +                    
Sbjct: 112 LSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKYLASKK 171
Query: 202 ----DIKSINILLDDNYTTKVCDFGASK 225
               D+ + N +LD+ +T KV DFG ++
Sbjct: 172 FVHRDLAARNCMLDEKFTVKVADFGLAR 199

>pdb|2RFN|A Chain A, X-ray Structure Of C-met With Inhibitor. Length = 310

Iteration: 1
 Score = 58.2 bits (139), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 71/148 (47%), Gaps = 30/148 (20%)
Query: 108 YDRMIGRGGYGTVFLGSLSDNKA----IAIKK-SRIVYQSQIEQCINKVVVLSQINHRNV 162
           ++ +IGRG +G V+ G+L DN       A+K  +RI    ++ Q + + +++   +H NV
Sbjct: 34  FNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNV 93
Query: 163 VGLLGCCLETE-VPLLVNEFVKLPTISWEVRIRIAAETAE-------------------- 201
           + LLG CL +E  PL+V  ++K   +   +R      T +                    
Sbjct: 94  LSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKYLASKK 153
Query: 202 ----DIKSINILLDDNYTTKVCDFGASK 225
               D+ + N +LD+ +T KV DFG ++
Sbjct: 154 FVHRDLAARNCMLDEKFTVKVADFGLAR 181

>pdb|3CTH|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The Hepatocyte Growth Factor Receptor C-Met In Complex With A Aminopyridine Based Inhibitor Length = 314

Iteration: 1
 Score = 58.2 bits (139), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 71/148 (47%), Gaps = 30/148 (20%)
Query: 108 YDRMIGRGGYGTVFLGSLSDNKA----IAIKK-SRIVYQSQIEQCINKVVVLSQINHRNV 162
           ++ +IGRG +G V+ G+L DN       A+K  +RI    ++ Q + + +++   +H NV
Sbjct: 34  FNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNV 93
Query: 163 VGLLGCCLETE-VPLLVNEFVKLPTISWEVRIRIAAETAE-------------------- 201
           + LLG CL +E  PL+V  ++K   +   +R      T +                    
Sbjct: 94  LSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKFLASKK 153
Query: 202 ----DIKSINILLDDNYTTKVCDFGASK 225
               D+ + N +LD+ +T KV DFG ++
Sbjct: 154 FVHRDLAARNCMLDEKFTVKVADFGLAR 181

>pdb|1R0P|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The Hepatocyte Growth Factor Receptor C-Met In Complex With The Microbial Alkaloid K-252a Length = 312

Iteration: 1
 Score = 58.2 bits (139), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 71/148 (47%), Gaps = 30/148 (20%)
Query: 108 YDRMIGRGGYGTVFLGSLSDNKA----IAIKK-SRIVYQSQIEQCINKVVVLSQINHRNV 162
           ++ +IGRG +G V+ G+L DN       A+K  +RI    ++ Q + + +++   +H NV
Sbjct: 32  FNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNV 91
Query: 163 VGLLGCCLETE-VPLLVNEFVKLPTISWEVRIRIAAETAE-------------------- 201
           + LLG CL +E  PL+V  ++K   +   +R      T +                    
Sbjct: 92  LSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKFLASKK 151
Query: 202 ----DIKSINILLDDNYTTKVCDFGASK 225
               D+ + N +LD+ +T KV DFG ++
Sbjct: 152 FVHRDLAARNCMLDEKFTVKVADFGLAR 179

>pdb|3Q6W|A Chain A, Structure Of Dually-phosphorylated Met Receptor Kinase In Complex With An Mk-2461 Analog With Specificity For The Activated Receptor Length = 307

Iteration: 1
 Score = 58.2 bits (139), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 71/148 (47%), Gaps = 30/148 (20%)
Query: 108 YDRMIGRGGYGTVFLGSLSDNKA----IAIKK-SRIVYQSQIEQCINKVVVLSQINHRNV 162
           ++ +IGRG +G V+ G+L DN       A+K  +RI    ++ Q + + +++   +H NV
Sbjct: 33  FNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNV 92
Query: 163 VGLLGCCLETE-VPLLVNEFVKLPTISWEVRIRIAAETAE-------------------- 201
           + LLG CL +E  PL+V  ++K   +   +R      T +                    
Sbjct: 93  LSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKYLASKK 152
Query: 202 ----DIKSINILLDDNYTTKVCDFGASK 225
               D+ + N +LD+ +T KV DFG ++
Sbjct: 153 FVHRDLAARNCMLDEKFTVKVADFGLAR 180

>pdb|3DKG|A Chain A, Sgx Clone 5698a109kfg1h1 Length = 317

Iteration: 1
 Score = 58.2 bits (139), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 71/148 (47%), Gaps = 30/148 (20%)
Query: 108 YDRMIGRGGYGTVFLGSLSDNKA----IAIKK-SRIVYQSQIEQCINKVVVLSQINHRNV 162
           ++ +IGRG +G V+ G+L DN       A+K  +RI    ++ Q + + +++   +H NV
Sbjct: 35  FNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNV 94
Query: 163 VGLLGCCLETE-VPLLVNEFVKLPTISWEVRIRIAAETAE-------------------- 201
           + LLG CL +E  PL+V  ++K   +   +R      T +                    
Sbjct: 95  LSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKFLASKK 154
Query: 202 ----DIKSINILLDDNYTTKVCDFGASK 225
               D+ + N +LD+ +T KV DFG ++
Sbjct: 155 FVHRDLAARNCMLDEKFTVKVADFGLAR 182

>pdb|3PLS|A Chain A, Ron In Complex With Ligand Amp-Pnp Length = 298

Iteration: 1
 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 72/147 (48%), Gaps = 30/147 (20%)
Query: 109 DRMIGRGGYGTVFLGSLSDNKA----IAIKK-SRIVYQSQIEQCINKVVVLSQINHRNVV 163
           DR+IG+G +G V+ G   D        AIK  SRI    Q+E  + + +++  +NH NV+
Sbjct: 26  DRVIGKGHFGVVYHGEYIDQAQNRIQCAIKSLSRITEMQQVEAFLREGLLMRGLNHPNVL 85
Query: 164 GLLGCCLETE------VPLLVN----EFVKLPT--------ISWEVRIRIAAE------- 198
            L+G  L  E      +P + +    +F++ P         IS+ +++    E       
Sbjct: 86  ALIGIMLPPEGLPHVLLPYMCHGDLLQFIRSPQRNPTVKDLISFGLQVARGMEYLAEQKF 145
Query: 199 TAEDIKSINILLDDNYTTKVCDFGASK 225
              D+ + N +LD+++T KV DFG ++
Sbjct: 146 VHRDLAARNCMLDESFTVKVADFGLAR 172

>pdb|3T9T|A Chain A, Crystal Structure Of Btk Mutant (F435t,K596r) Complexed With Imidazo[1,5-A]quinoxaline Length = 267

Iteration: 1
 Score = 53.9 bits (128), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 73/164 (44%), Gaps = 25/164 (15%)
Query: 97  GELKIATNNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQ 156
           G+  I  +   + + IG G +G V LG   +   +AIK  R    S+ E  I +  V+ +
Sbjct: 1   GKWVIDPSELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAMSE-EDFIEEAEVMMK 59
Query: 157 INHRNVVGLLGCCLETEVPLLVNEFVKLPTISWEVRIR---IAAET-------------- 199
           ++H  +V L G CLE     LV EF++   +S  +R +    AAET              
Sbjct: 60  LSHPKLVQLYGVCLEQAPICLVTEFMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAY 119
Query: 200 -------AEDIKSINILLDDNYTTKVCDFGASKLVPIDETQLST 236
                    D+ + N L+ +N   KV DFG ++ V  D+   ST
Sbjct: 120 LEEACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSST 163

>pdb|4HCT|A Chain A, Crystal Structure Of Itk In Complex With Compound 52 Length = 269

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 74/165 (44%), Gaps = 25/165 (15%)
Query: 96  AGELKIATNNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLS 155
           +G+  I  +   + + IG G +G V LG   +   +AIK  R    S+ E  I +  V+ 
Sbjct: 2   SGKWVIDPSELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAMSE-EDFIEEAEVMM 60
Query: 156 QINHRNVVGLLGCCLETEVPLLVNEFVKLPTISWEVRIR---IAAET------------- 199
           +++H  +V L G CLE     LV EF++   +S  +R +    AAET             
Sbjct: 61  KLSHPKLVQLYGVCLEQAPICLVFEFMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMA 120
Query: 200 --------AEDIKSINILLDDNYTTKVCDFGASKLVPIDETQLST 236
                     D+ + N L+ +N   KV DFG ++ V  D+   ST
Sbjct: 121 YLEEACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSST 165

>pdb|3MIY|A Chain A, X-Ray Crystal Structure Of Itk Complexed With Sunitinib Length = 266

Iteration: 1
 Score = 52.0 bits (123), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 71/160 (44%), Gaps = 25/160 (15%)
Query: 101 IATNNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHR 160
           I  +   + + IG G +G V LG   +   +AIK  R    S+ E  I +  V+ +++H 
Sbjct: 4   IDPSELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAMSE-EDFIEEAEVMMKLSHP 62
Query: 161 NVVGLLGCCLETEVPLLVNEFVKLPTISWEVRIR---IAAET------------------ 199
            +V L G CLE     LV EF++   +S  +R +    AAET                  
Sbjct: 63  KLVQLYGVCLEQAPICLVFEFMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLEEA 122
Query: 200 ---AEDIKSINILLDDNYTTKVCDFGASKLVPIDETQLST 236
                D+ + N L+ +N   KV DFG ++ V  D+   ST
Sbjct: 123 SVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSST 162

>pdb|3V5J|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase Itk Catalytic Domain With Thienopyrazolylindole Inhibitor 090 Length = 266

Iteration: 1
 Score = 52.0 bits (123), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 71/160 (44%), Gaps = 25/160 (15%)
Query: 101 IATNNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHR 160
           I  +   + + IG G +G V LG   +   +AIK  R    S+ E  I +  V+ +++H 
Sbjct: 4   IDPSELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAMSE-EDFIEEAEVMMKLSHP 62
Query: 161 NVVGLLGCCLETEVPLLVNEFVKLPTISWEVRIR---IAAET------------------ 199
            +V L G CLE     LV EF++   +S  +R +    AAET                  
Sbjct: 63  KLVQLYGVCLEQAPICLVFEFMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLEEA 122
Query: 200 ---AEDIKSINILLDDNYTTKVCDFGASKLVPIDETQLST 236
                D+ + N L+ +N   KV DFG ++ V  D+   ST
Sbjct: 123 CVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSST 162

>pdb|1SM2|A Chain A, Crystal Structure Of The Phosphorylated Interleukin-2 Tyrosine Kinase Catalytic Domain Length = 264

Iteration: 1
 Score = 51.6 bits (122), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 71/160 (44%), Gaps = 25/160 (15%)
Query: 101 IATNNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHR 160
           I  +   + + IG G +G V LG   +   +AIK  R    S+ E  I +  V+ +++H 
Sbjct: 2   IDPSELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAMSE-EDFIEEAEVMMKLSHP 60
Query: 161 NVVGLLGCCLETEVPLLVNEFVKLPTISWEVRIR---IAAET------------------ 199
            +V L G CLE     LV EF++   +S  +R +    AAET                  
Sbjct: 61  KLVQLYGVCLEQAPICLVFEFMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLEEA 120
Query: 200 ---AEDIKSINILLDDNYTTKVCDFGASKLVPIDETQLST 236
                D+ + N L+ +N   KV DFG ++ V  D+   ST
Sbjct: 121 CVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSST 160

>pdb|3QGW|A Chain A, Crystal Structure Of Itk Kinase Bound To An Inhibitor Length = 286

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 71/160 (44%), Gaps = 25/160 (15%)
Query: 101 IATNNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHR 160
           I  +   + + IG G +G V LG   +   +AIK  +    S+ +  I +  V+ +++H 
Sbjct: 24  IDPSELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIKEGSMSE-DDFIEEAEVMMKLSHP 82
Query: 161 NVVGLLGCCLETEVPLLVNEFVKLPTISWEVRIR---IAAET------------------ 199
            +V L G CLE     LV EF++   +S  +R +    AAET                  
Sbjct: 83  KLVQLYGVCLEQAPICLVFEFMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLEEA 142
Query: 200 ---AEDIKSINILLDDNYTTKVCDFGASKLVPIDETQLST 236
                D+ + N L+ +N   KV DFG ++ V  D+   ST
Sbjct: 143 CVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSST 182

>pdb|4EQM|A Chain A, Structural Analysis Of Staphylococcus Aureus SerineTHREONINE KINASE Pknb Length = 294

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 52/175 (29%), Positives = 81/175 (46%), Gaps = 31/175 (17%)
Query: 100 KIATNNYAYDRMIGRGGYGTVFLGSLSD-NKAIAIKKSRIVYQSQIE---QCINKVVVLS 155
           KI    Y     +G GG  TV+L   +  N  +AIK   I  + + E   +   +V   S
Sbjct: 7   KIINERYKIVDKLGGGGMSTVYLAEDTILNIKVAIKAIFIPPREKEETLKRFEREVHNSS 66
Query: 156 QINHRNVVGLLGCCLETEVPLLVNEFVKLPTISW--EVRIRIAAETA------------- 200
           Q++H+N+V ++    E +   LV E+++ PT+S   E    ++ +TA             
Sbjct: 67  QLSHQNIVSMIDVDEEDDCYYLVMEYIEGPTLSEYIESHGPLSVDTAINFTNQILDGIKH 126
Query: 201 --------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQL--STMVQGTLGYY 245
                    DIK  NIL+D N T K+ DFG +K   + ET L  +  V GT+ Y+
Sbjct: 127 AHDMRIVHRDIKPQNILIDSNKTLKIFDFGIAKA--LSETSLTQTNHVLGTVQYF 179

>pdb|3BKB|A Chain A, Crystal Structure Of Human Feline Sarcoma Viral Oncogene Homologue (V- Fes) Length = 377

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 65/140 (46%), Gaps = 26/140 (18%)
Query: 112 IGRGGYGTVFLGSL-SDNKAIAIKKSRIVYQSQIE-QCINKVVVLSQINHRNVVGLLGCC 169
           IGRG +G VF G L +DN  +A+K  R      ++ + + +  +L Q +H N+V L+G C
Sbjct: 122 IGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVC 181
Query: 170 LETEVPLLVNEFVK-------LPTISWEVRIRI-------AAETAE----------DIKS 205
            + +   +V E V+       L T    +R++        AA   E          D+ +
Sbjct: 182 TQKQPIYIVMELVQGGDFLTFLRTEGARLRVKTLLQMVGDAAAGMEYLESKCCIHRDLAA 241
Query: 206 INILLDDNYTTKVCDFGASK 225
            N L+ +    K+ DFG S+
Sbjct: 242 RNCLVTEKNVLKISDFGMSR 261

>pdb|3CD3|A Chain A, Crystal Structure Of Phosphorylated Human Feline Sarcoma Viral Oncogene Homologue (V-Fes) In Complex With Staurosporine And A Consensus Peptide Length = 377

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 65/140 (46%), Gaps = 26/140 (18%)
Query: 112 IGRGGYGTVFLGSL-SDNKAIAIKKSRIVYQSQIE-QCINKVVVLSQINHRNVVGLLGCC 169
           IGRG +G VF G L +DN  +A+K  R      ++ + + +  +L Q +H N+V L+G C
Sbjct: 122 IGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVC 181
Query: 170 LETEVPLLVNEFVK-------LPTISWEVRIRI-------AAETAE----------DIKS 205
            + +   +V E V+       L T    +R++        AA   E          D+ +
Sbjct: 182 TQKQPIYIVMELVQGGDFLTFLRTEGARLRVKTLLQMVGDAAAGMEYLESKCCIHRDLAA 241
Query: 206 INILLDDNYTTKVCDFGASK 225
            N L+ +    K+ DFG S+
Sbjct: 242 RNCLVTEKNVLKISDFGMSR 261

>pdb|3PPZ|A Chain A, Crystal Structure Of Ctr1 Kinase Domain In Complex With Staurosporine Length = 309

Iteration: 1
 Score = 48.1 bits (113), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/144 (23%), Positives = 64/144 (44%), Gaps = 29/144 (20%)
Query: 112 IGRGGYGTVFLGSLS-DNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCL 170
           IG G +GTV        + A+ I   +  +  ++ + + +V ++ ++ H N+V  +G   
Sbjct: 45  IGAGSFGTVHRAEWHGSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIVLFMGAVT 104
Query: 171 ETEVPLLVNEFVKLPTI-------------SWEVRIRIAAETAE---------------D 202
           +     +V E++   ++                 R+ +A + A+               D
Sbjct: 105 QPPNLSIVTEYLSRGSLYRLLHKSGAREQLDERRRLSMAYDVAKGMNYLHNRNPPIVHRD 164
Query: 203 IKSINILLDDNYTTKVCDFGASKL 226
           +KS N+L+D  YT KVCDFG S+L
Sbjct: 165 LKSPNLLVDKKYTVKVCDFGLSRL 188

>pdb|3P86|A Chain A, Crystal Structure Of Ctr1 Kinase Domain Mutant D676n In Complex With Staurosporine Length = 309

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/144 (22%), Positives = 64/144 (44%), Gaps = 29/144 (20%)
Query: 112 IGRGGYGTVFLGSLS-DNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCL 170
           IG G +GTV        + A+ I   +  +  ++ + + +V ++ ++ H N+V  +G   
Sbjct: 45  IGAGSFGTVHRAEWHGSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIVLFMGAVT 104
Query: 171 ETEVPLLVNEFVKLPTI-------------SWEVRIRIAAETAE---------------D 202
           +     +V E++   ++                 R+ +A + A+               +
Sbjct: 105 QPPNLSIVTEYLSRGSLYRLLHKSGAREQLDERRRLSMAYDVAKGMNYLHNRNPPIVHRN 164
Query: 203 IKSINILLDDNYTTKVCDFGASKL 226
           +KS N+L+D  YT KVCDFG S+L
Sbjct: 165 LKSPNLLVDKKYTVKVCDFGLSRL 188

>pdb|3E5A|A Chain A, Crystal Structure Of Aurora A In Complex With Vx-680 And Tpx2 Length = 268

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/177 (25%), Positives = 75/177 (42%), Gaps = 34/177 (19%)
Query: 97  GELKIATNNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIE------QCINK 150
           G+ + A  ++   R +G+G +G V+L     +K I   K  +++++Q+E      Q   +
Sbjct: 1   GKRQWALEDFEIGRPLGKGKFGNVYLAREKQSKFILALK--VLFKAQLEKAGVEHQLRRE 58
Query: 151 VVVLSQINHRNVVGLLGCCLETEVPLLVNEFVKLPTISWEVR-------IRIAAETAE-- 201
           V + S + H N++ L G   +     L+ E+  L T+  E++        R A    E  
Sbjct: 59  VEIQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELA 118
Query: 202 --------------DIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTLGY 244
                         DIK  N+LL      K+ DFG S   P   +   T + GTL Y
Sbjct: 119 NALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAP---SSRRTXLCGTLDY 172

>pdb|1UA2|A Chain A, Crystal Structure Of Human Cdk7 Length = 346

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/160 (24%), Positives = 77/160 (48%), Gaps = 31/160 (19%)
Query: 96  AGELKIATNNYAYDRMIGRGGYGTVFLGSLSD-NKAIAIKKSRIVYQSQIEQCINK---- 150
           A ++K     Y     +G G + TV+     + N+ +AIKK ++ ++S+ +  IN+    
Sbjct: 2   ALDVKSRAKRYEKLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALR 61
Query: 151 -VVVLSQINHRNVVGLLGCC------------LETEVPLLV--NEFVKLPTISWEVRIRI 195
            + +L +++H N++GLL               +ET++ +++  N  V  P+   +  + +
Sbjct: 62  EIKLLQELSHPNIIGLLDAFGHKSNISLVFDFMETDLEVIIKDNSLVLTPS-HIKAYMLM 120
Query: 196 AAETAE----------DIKSINILLDDNYTTKVCDFGASK 225
             +  E          D+K  N+LLD+N   K+ DFG +K
Sbjct: 121 TLQGLEYLHQHWILHRDLKPNNLLLDENGVLKLADFGLAK 160

>pdb|3D14|A Chain A, Crystal Structure Of Mouse Aurora A (Asn186->gly, Lys240->arg, Met302- >leu) In Complex With 1-{5-[2-(Thieno[3,2-D]pyrimidin-4-Ylamino)- Ethyl]- Thiazol-2-Yl}-3-(3-Trifluoromethyl-Phenyl)-Urea Length = 272

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 72/170 (42%), Gaps = 34/170 (20%)
Query: 104 NNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIE------QCINKVVVLSQI 157
            ++   R +G+G +G V+L     +K I   K  +++++Q+E      Q   +V + S +
Sbjct: 12  EDFDIGRPLGKGKFGNVYLARERQSKFILALK--VLFKTQLEKAGVEHQLRREVEIQSHL 69
Query: 158 NHRNVVGLLGCCLETEVPLLVNEFVKLPTISWEVR-------IRIAAETAE--------- 201
            H N++ L G   +     L+ E+  L T+  E++        R A    E         
Sbjct: 70  RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSRFDEQRTATYITELANALSYCH 129
Query: 202 -------DIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTLGY 244
                  DIK  N+LL  N   K+ DFG S   P   +   T + GTL Y
Sbjct: 130 SKRVIHRDIKPENLLLGSNGELKIADFGWSVHAP---SSRRTTLCGTLDY 176

>pdb|2QOC|A Chain A, Human Epha3 Kinase Domain, Phosphorylated, Amp-Pnp Bound Structure Length = 344

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 44/186 (23%), Positives = 81/186 (43%), Gaps = 32/186 (17%)
Query: 86  GSSDTAKIFTAGELKIATNNYAYDRMIGRGGYGTVFLGSLS----DNKAIAIKKSRIVY- 140
           GS+ T   F A EL     N + D+++G G +G V  G L        ++AIK  ++ Y 
Sbjct: 1   GSTQTVHEF-AKELD--ATNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYT 57
Query: 141 QSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEFVKLPTISWEVRIRIAAETA 200
           + Q    + +  ++ Q +H N++ L G   +++  ++V E+++  ++   +R   A  T 
Sbjct: 58  EKQRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFTV 117
Query: 201 ------------------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLST 236
                                    D+ + NIL++ N   KV DFG S+++  D     T
Sbjct: 118 IQLVGMLRGIASGMKYLSDMGYVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYT 177
Query: 237 MVQGTL 242
              G +
Sbjct: 178 TRGGKI 183

>pdb|3DZQ|A Chain A, Human Epha3 Kinase Domain In Complex With Inhibitor Awl-Ii- 38.3 Length = 361

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 44/186 (23%), Positives = 81/186 (43%), Gaps = 32/186 (17%)
Query: 86  GSSDTAKIFTAGELKIATNNYAYDRMIGRGGYGTVFLGSLS----DNKAIAIKKSRIVY- 140
           GS+ T   F A EL     N + D+++G G +G V  G L        ++AIK  ++ Y 
Sbjct: 18  GSTQTVHEF-AKELD--ATNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYT 74
Query: 141 QSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEFVKLPTISWEVRIRIAAETA 200
           + Q    + +  ++ Q +H N++ L G   +++  ++V E+++  ++   +R   A  T 
Sbjct: 75  EKQRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFTV 134
Query: 201 ------------------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLST 236
                                    D+ + NIL++ N   KV DFG S+++  D     T
Sbjct: 135 IQLVGMLRGIASGMKYLSDMGYVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYT 194
Query: 237 MVQGTL 242
              G +
Sbjct: 195 TRGGKI 200

>pdb|3QBN|A Chain A, Structure Of Human Aurora A In Complex With A Diaminopyrimidine Length = 281

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 72/172 (41%), Gaps = 34/172 (19%)
Query: 102 ATNNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIE------QCINKVVVLS 155
           A  ++   R +G+G +G V+L     +K I   K  +++++Q+E      Q   +V + S
Sbjct: 7   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALK--VLFKAQLEKAGVEHQLRREVEIQS 64
Query: 156 QINHRNVVGLLGCCLETEVPLLVNEFVKLPTISWEVR-------IRIAAETAE------- 201
            + H N++ L G   +     L+ E+  L T+  E++        R A    E       
Sbjct: 65  HLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSY 124
Query: 202 ---------DIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTLGY 244
                    DIK  N+LL      K+ DFG S   P   +   T + GTL Y
Sbjct: 125 CHSKRVIHRDIKPENLLLGSAGELKIADFGWSCHAP---SSRRTTLSGTLDY 173

>pdb|2J50|A Chain A, Structure Of Aurora-2 In Complex With Pha-739358 Length = 280

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/177 (25%), Positives = 74/177 (41%), Gaps = 34/177 (19%)
Query: 97  GELKIATNNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIE------QCINK 150
           G  + A  ++   R +G+G +G V+L     +K I   K  +++++Q+E      Q   +
Sbjct: 1   GPRQWALEDFEIGRPLGKGKFGNVYLAREKQSKFILALK--VLFKAQLEKAGVEHQLRRE 58
Query: 151 VVVLSQINHRNVVGLLGCCLETEVPLLVNEFVKLPTISWEVR-------IRIAAETAE-- 201
           V + S + H N++ L G   +     L+ E+  L T+  E++        R A    E  
Sbjct: 59  VEIQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELA 118
Query: 202 --------------DIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTLGY 244
                         DIK  N+LL      K+ DFG S   P   +   T + GTL Y
Sbjct: 119 NALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAP---SSRRTTLCGTLDY 172

>pdb|2REI|A Chain A, Kinase Domain Of Human Ephrin Type-a Receptor 7 (epha7) Length = 318

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 41/163 (25%), Positives = 72/163 (44%), Gaps = 29/163 (17%)
Query: 109 DRMIGRGGYGTVFLGSLS----DNKAIAIKKSRIVY-QSQIEQCINKVVVLSQINHRNVV 163
           +R+IG G +G V  G L      + A+AIK  ++ Y + Q    + +  ++ Q +H NVV
Sbjct: 48  ERVIGAGEFGEVCSGRLKLPGKRDVAVAIKTLKVGYTEKQRRDFLCEASIMGQFDHPNVV 107
Query: 164 GLLGCCLETEVPLLVNEFVKLPTISWEVR---------------------IRIAAETA-- 200
            L G     +  ++V EF++   +   +R                     +R  A+    
Sbjct: 108 HLEGVVTRGKPVMIVIEFMENGALDAFLRKHDGQFTVIQLVGMLRGIAAGMRYLADMGYV 167
Query: 201 -EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTL 242
             D+ + NIL++ N   KV DFG S+++  D   + T   G +
Sbjct: 168 HRDLAARNILVNSNLVCKVSDFGLSRVIEDDPEAVYTTTGGKI 210

>pdb|2XRU|A Chain A, Aurora-A T288e Complexed With Pha-828300 Length = 280

Iteration: 1
 Score = 44.7 bits (104), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 45/177 (25%), Positives = 74/177 (41%), Gaps = 34/177 (19%)
Query: 97  GELKIATNNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIE------QCINK 150
           G  + A  ++   R +G+G +G V+L     +K I   K  +++++Q+E      Q   +
Sbjct: 1   GPRQWALEDFEIGRPLGKGKFGNVYLAREKQSKFILALK--VLFKAQLEKAGVEHQLRRE 58
Query: 151 VVVLSQINHRNVVGLLGCCLETEVPLLVNEFVKLPTISWEVR-------IRIAAETAE-- 201
           V + S + H N++ L G   +     L+ E+  L T+  E++        R A    E  
Sbjct: 59  VEIQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELA 118
Query: 202 --------------DIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTLGY 244
                         DIK  N+LL      K+ DFG S   P   +   T + GTL Y
Sbjct: 119 NALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAP---SSRRTELCGTLDY 172

>pdb|4G9R|A Chain A, B-Raf V600e Kinase Domain Bound To A Type Ii Dihydroquinazoline Inhibitor Length = 307

Iteration: 1
 Score = 44.7 bits (104), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 41/174 (23%), Positives = 70/174 (40%), Gaps = 45/174 (25%)
Query: 86  GSSDTAKIFTAG------ELKIATNNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIV 139
           GS D  ++ T G      + +I        + IG G +GTV+ G    + A+ +      
Sbjct: 12  GSEDRNRMKTLGRRDSSDDWEIPDGQITVGQRIGSGSFGTVYKGKWHGDVAVKMLNVTAP 71
Query: 140 YQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVN------------------EF 181
              Q++   N+V VL +  H N++  +G   + ++ ++                    E 
Sbjct: 72  TPQQLQAFKNEVGVLRKTRHVNILLFMGYSTKPQLAIVTQWCEGSSLYHHLHIIETKFEM 131
Query: 182 VKLPTISWEVRIRIAAETAE-------------DIKSINILLDDNYTTKVCDFG 222
           +KL        I IA +TA+             D+KS NI L ++ T K+ DFG
Sbjct: 132 IKL--------IDIARQTAQGMDYLHAKSIIHRDLKSNNIFLHEDLTVKIGDFG 177

>pdb|3D4Q|A Chain A, Pyrazole-Based Inhibitors Of B-Raf Kinase Length = 307

Iteration: 1
 Score = 44.7 bits (104), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 41/174 (23%), Positives = 70/174 (40%), Gaps = 45/174 (25%)
Query: 86  GSSDTAKIFTAG------ELKIATNNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIV 139
           GS D  ++ T G      + +I        + IG G +GTV+ G    + A+ +      
Sbjct: 12  GSEDRNRMKTLGRRDSSDDWEIPDGQITVGQRIGSGSFGTVYKGKWHGDVAVKMLNVTAP 71
Query: 140 YQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVN------------------EF 181
              Q++   N+V VL +  H N++  +G   + ++ ++                    E 
Sbjct: 72  TPQQLQAFKNEVGVLRKTRHVNILLFMGYSTKPQLAIVTQWCEGSSLYHHLHIIETKFEM 131
Query: 182 VKLPTISWEVRIRIAAETAE-------------DIKSINILLDDNYTTKVCDFG 222
           +KL        I IA +TA+             D+KS NI L ++ T K+ DFG
Sbjct: 132 IKL--------IDIARQTAQGMDYLHAKSIIHRDLKSNNIFLHEDLTVKIGDFG 177

>pdb|1MQ4|A Chain A, Crystal Structure Of Aurora-A Protein Kinase Length = 272

Iteration: 1
 Score = 44.7 bits (104), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 72/172 (41%), Gaps = 34/172 (19%)
Query: 102 ATNNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIE------QCINKVVVLS 155
           A  ++   R +G+G +G V+L     +K I   K  +++++Q+E      Q   +V + S
Sbjct: 10  ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALK--VLFKAQLEKAGVEHQLRREVEIQS 67
Query: 156 QINHRNVVGLLGCCLETEVPLLVNEFVKLPTISWEVR-------IRIAAETAE------- 201
            + H N++ L G   +     L+ E+  L T+  E++        R A    E       
Sbjct: 68  HLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSY 127
Query: 202 ---------DIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTLGY 244
                    DIK  N+LL      K+ DFG S   P   +   T + GTL Y
Sbjct: 128 CHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAP---SSRRTTLCGTLDY 176

>pdb|2W1D|A Chain A, Structure Determination Of Aurora Kinase In Complex With Inhibitor Length = 275

Iteration: 1
 Score = 44.7 bits (104), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 72/172 (41%), Gaps = 34/172 (19%)
Query: 102 ATNNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIE------QCINKVVVLS 155
           A  ++   R +G+G +G V+L     +K I   K  +++++Q+E      Q   +V + S
Sbjct: 9   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALK--VLFKAQLEKAGVEHQLRREVEIQS 66
Query: 156 QINHRNVVGLLGCCLETEVPLLVNEFVKLPTISWEVR-------IRIAAETAE------- 201
            + H N++ L G   +     L+ E+  L T+  E++        R A    E       
Sbjct: 67  HLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSY 126
Query: 202 ---------DIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTLGY 244
                    DIK  N+LL      K+ DFG S   P   +   T + GTL Y
Sbjct: 127 CHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAP---SSRRTTLCGTLDY 175

>pdb|2QOI|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f Double Mutant Length = 373

Iteration: 1
 Score = 44.7 bits (104), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 37/172 (21%), Positives = 75/172 (43%), Gaps = 29/172 (16%)
Query: 100 KIATNNYAYDRMIGRGGYGTVFLGSLS----DNKAIAIKKSRIVY-QSQIEQCINKVVVL 154
           ++   N + D+++G G +G V  G L        ++AIK  ++ Y + Q    + +  ++
Sbjct: 41  ELDATNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIM 100
Query: 155 SQINHRNVVGLLGCCLETEVPLLVNEFVKLPTISWEVRIRIAAETA-------------- 200
            Q +H N++ L G   +++  ++V E+++  ++   +R   A  T               
Sbjct: 101 GQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFTVIQLVGMLRGIASGM 160
Query: 201 ----------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTL 242
                      D+ + NIL++ N   KV DFG S+++  D     T   G +
Sbjct: 161 KYLSDMGYVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTTRGGKI 212

>pdb|3O50|A Chain A, Crystal Structure Of Benzamide 9 Bound To Auroraa Length = 267

Iteration: 1
 Score = 44.3 bits (103), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 72/172 (41%), Gaps = 34/172 (19%)
Query: 102 ATNNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIE------QCINKVVVLS 155
           A  ++   R +G+G +G V+L     +K I   K  +++++Q+E      Q   +V + S
Sbjct: 5   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALK--VLFKAQLEKAGVEHQLRREVEIQS 62
Query: 156 QINHRNVVGLLGCCLETEVPLLVNEFVKLPTISWEVR-------IRIAAETAE------- 201
            + H N++ L G   +     L+ E+  L T+  E++        R A    E       
Sbjct: 63  HLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSY 122
Query: 202 ---------DIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTLGY 244
                    DIK  N+LL      K+ DFG S   P   +   T + GTL Y
Sbjct: 123 CHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAP---SSRRTTLCGTLDY 171

>pdb|2QOO|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f:y742f Triple Mutant Length = 373

Iteration: 1
 Score = 44.3 bits (103), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 37/172 (21%), Positives = 75/172 (43%), Gaps = 29/172 (16%)
Query: 100 KIATNNYAYDRMIGRGGYGTVFLGSLS----DNKAIAIKKSRIVY-QSQIEQCINKVVVL 154
           ++   N + D+++G G +G V  G L        ++AIK  ++ Y + Q    + +  ++
Sbjct: 41  ELDATNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIM 100
Query: 155 SQINHRNVVGLLGCCLETEVPLLVNEFVKLPTISWEVRIRIAAETA-------------- 200
            Q +H N++ L G   +++  ++V E+++  ++   +R   A  T               
Sbjct: 101 GQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFTVIQLVGMLRGIASGM 160
Query: 201 ----------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTL 242
                      D+ + NIL++ N   KV DFG S+++  D     T   G +
Sbjct: 161 KYLSDMGFVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTTRGGKI 212

>pdb|2QOF|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f Mutant Length = 373

Iteration: 1
 Score = 44.3 bits (103), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 37/172 (21%), Positives = 75/172 (43%), Gaps = 29/172 (16%)
Query: 100 KIATNNYAYDRMIGRGGYGTVFLGSLS----DNKAIAIKKSRIVY-QSQIEQCINKVVVL 154
           ++   N + D+++G G +G V  G L        ++AIK  ++ Y + Q    + +  ++
Sbjct: 41  ELDATNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIM 100
Query: 155 SQINHRNVVGLLGCCLETEVPLLVNEFVKLPTISWEVRIRIAAETA-------------- 200
            Q +H N++ L G   +++  ++V E+++  ++   +R   A  T               
Sbjct: 101 GQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFTVIQLVGMLRGIASGM 160
Query: 201 ----------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTL 242
                      D+ + NIL++ N   KV DFG S+++  D     T   G +
Sbjct: 161 KYLSDMGYVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTTRGGKI 212

>pdb|2QOD|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y602f Mutant Length = 373

Iteration: 1
 Score = 44.3 bits (103), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 37/172 (21%), Positives = 75/172 (43%), Gaps = 29/172 (16%)
Query: 100 KIATNNYAYDRMIGRGGYGTVFLGSLS----DNKAIAIKKSRIVY-QSQIEQCINKVVVL 154
           ++   N + D+++G G +G V  G L        ++AIK  ++ Y + Q    + +  ++
Sbjct: 41  ELDATNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIM 100
Query: 155 SQINHRNVVGLLGCCLETEVPLLVNEFVKLPTISWEVRIRIAAETA-------------- 200
            Q +H N++ L G   +++  ++V E+++  ++   +R   A  T               
Sbjct: 101 GQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFTVIQLVGMLRGIASGM 160
Query: 201 ----------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTL 242
                      D+ + NIL++ N   KV DFG S+++  D     T   G +
Sbjct: 161 KYLSDMGYVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTTRGGKI 212

>pdb|2GSF|A Chain A, The Human Epha3 Receptor Tyrosine Kinase And Juxtamembrane Region Length = 373

Iteration: 1
 Score = 44.3 bits (103), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 37/172 (21%), Positives = 75/172 (43%), Gaps = 29/172 (16%)
Query: 100 KIATNNYAYDRMIGRGGYGTVFLGSLS----DNKAIAIKKSRIVY-QSQIEQCINKVVVL 154
           ++   N + D+++G G +G V  G L        ++AIK  ++ Y + Q    + +  ++
Sbjct: 41  ELDATNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIM 100
Query: 155 SQINHRNVVGLLGCCLETEVPLLVNEFVKLPTISWEVRIRIAAETA-------------- 200
            Q +H N++ L G   +++  ++V E+++  ++   +R   A  T               
Sbjct: 101 GQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFTVIQLVGMLRGIASGM 160
Query: 201 ----------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTL 242
                      D+ + NIL++ N   KV DFG S+++  D     T   G +
Sbjct: 161 KYLSDMGYVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTTRGGKI 212

>pdb|2DWB|A Chain A, Aurora-A Kinase Complexed With Amppnp Length = 285

Iteration: 1
 Score = 44.3 bits (103), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 72/172 (41%), Gaps = 34/172 (19%)
Query: 102 ATNNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIE------QCINKVVVLS 155
           A  ++   R +G+G +G V+L     +K I   K  +++++Q+E      Q   +V + S
Sbjct: 11  ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALK--VLFKAQLEKAGVEHQLRREVEIQS 68
Query: 156 QINHRNVVGLLGCCLETEVPLLVNEFVKLPTISWEVR-------IRIAAETAE------- 201
            + H N++ L G   +     L+ E+  L T+  E++        R A    E       
Sbjct: 69  HLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSY 128
Query: 202 ---------DIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTLGY 244
                    DIK  N+LL      K+ DFG S   P   +   T + GTL Y
Sbjct: 129 CHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAP---SSRRTTLCGTLDY 177

>pdb|3GVU|A Chain A, The Crystal Structure Of Human Abl2 In Complex With Gleevec Length = 292

Iteration: 1
 Score = 44.3 bits (103), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 36/145 (24%), Positives = 59/145 (40%), Gaps = 27/145 (18%)
Query: 112 IGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLE 171
           +G G YG V++G           K+      ++E+ + +  V+ +I H N+V LLG C  
Sbjct: 40  LGGGQYGEVYVGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCT- 98
Query: 172 TEVPLLV-------------------NEFVKLPTISWEVRIRIAAETAE-------DIKS 205
            E P  +                    E   +  +    +I  A E  E       D+ +
Sbjct: 99  LEPPFYIVTEYMPYGNLLDYLRECNREEVTAVVLLYMATQISSAMEYLEKKNFIHRDLAA 158
Query: 206 INILLDDNYTTKVCDFGASKLVPID 230
            N L+ +N+  KV DFG S+L+  D
Sbjct: 159 RNCLVGENHVVKVADFGLSRLMTGD 183

>pdb|3FXX|A Chain A, Human Epha3 Kinase And Juxtamembrane Region Bound To Substrate Kqwdnye[ptyr]iw Length = 371

Iteration: 1
 Score = 44.3 bits (103), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 37/172 (21%), Positives = 75/172 (43%), Gaps = 29/172 (16%)
Query: 100 KIATNNYAYDRMIGRGGYGTVFLGSLS----DNKAIAIKKSRIVY-QSQIEQCINKVVVL 154
           ++   N + D+++G G +G V  G L        ++AIK  ++ Y + Q    + +  ++
Sbjct: 39  ELDATNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIM 98
Query: 155 SQINHRNVVGLLGCCLETEVPLLVNEFVKLPTISWEVRIRIAAETA-------------- 200
            Q +H N++ L G   +++  ++V E+++  ++   +R   A  T               
Sbjct: 99  GQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFTVIQLVGMLRGIASGM 158
Query: 201 ----------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTL 242
                      D+ + NIL++ N   KV DFG S+++  D     T   G +
Sbjct: 159 KYLSDMGYVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTTRGGKI 210

>pdb|2X6D|A Chain A, Aurora-A Bound To An Inhibitor Length = 285

Iteration: 1
 Score = 44.3 bits (103), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 72/172 (41%), Gaps = 34/172 (19%)
Query: 102 ATNNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIE------QCINKVVVLS 155
           A  ++   R +G+G +G V+L     +K I   K  +++++Q+E      Q   +V + S
Sbjct: 11  ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALK--VLFKAQLEKAGVEHQLRREVEIQS 68
Query: 156 QINHRNVVGLLGCCLETEVPLLVNEFVKLPTISWEVR-------IRIAAETAE------- 201
            + H N++ L G   +     L+ E+  L T+  E++        R A    E       
Sbjct: 69  HLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSY 128
Query: 202 ---------DIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTLGY 244
                    DIK  N+LL      K+ DFG S   P   +   T + GTL Y
Sbjct: 129 CHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAP---SSRRTTLCGTLDY 177

>pdb|2XNG|A Chain A, Structure Of Aurora-A Bound To A Selective Imidazopyrazine Inhibitor Length = 283

Iteration: 1
 Score = 44.3 bits (103), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 72/172 (41%), Gaps = 34/172 (19%)
Query: 102 ATNNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIE------QCINKVVVLS 155
           A  ++   R +G+G +G V+L     +K I   K  +++++Q+E      Q   +V + S
Sbjct: 9   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALK--VLFKAQLEKAGVEHQLRREVEIQS 66
Query: 156 QINHRNVVGLLGCCLETEVPLLVNEFVKLPTISWEVR-------IRIAAETAE------- 201
            + H N++ L G   +     L+ E+  L T+  E++        R A    E       
Sbjct: 67  HLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSY 126
Query: 202 ---------DIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTLGY 244
                    DIK  N+LL      K+ DFG S   P   +   T + GTL Y
Sbjct: 127 CHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAP---SSRRTTLCGTLDY 175

>pdb|2WQE|A Chain A, Structure Of S155r Aurora-A Somatic Mutant Length = 262

Iteration: 1
 Score = 44.3 bits (103), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 71/172 (41%), Gaps = 34/172 (19%)
Query: 102 ATNNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIE------QCINKVVVLS 155
           A  ++   R +G+G +G V+L      K I   K  +++++Q+E      Q   +V + S
Sbjct: 3   ALEDFEIGRPLGKGKFGNVYLAREKQRKFILALK--VLFKAQLEKAGVEHQLRREVEIQS 60
Query: 156 QINHRNVVGLLGCCLETEVPLLVNEFVKLPTISWEVR-------IRIAAETAE------- 201
            + H N++ L G   +     L+ E+  L T+  E++        R A    E       
Sbjct: 61  HLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSY 120
Query: 202 ---------DIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTLGY 244
                    DIK  N+LL      K+ DFG S   P   +   T + GTL Y
Sbjct: 121 CHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAP---SSRRTTLCGTLDY 169

>pdb|3HA6|A Chain A, Crystal Structure Of Aurora A In Complex With Tpx2 And Compound 10 Length = 268

Iteration: 1
 Score = 43.9 bits (102), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 44/177 (24%), Positives = 74/177 (41%), Gaps = 34/177 (19%)
Query: 97  GELKIATNNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIE------QCINK 150
           G+ + A  ++   R +G+G +G V+L     +K I   K  +++++Q+E      Q   +
Sbjct: 1   GKRQWALEDFEIGRPLGKGKFGNVYLAREKQSKFILALK--VLFKAQLEKAGVEHQLRRE 58
Query: 151 VVVLSQINHRNVVGLLGCCLETEVPLLVNEFVKLPTISWEVR-------IRIAAETAE-- 201
           V + S + H N++ L G   +     L+ E+  L T+  E++        R A    E  
Sbjct: 59  VEIQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELA 118
Query: 202 --------------DIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTLGY 244
                         DIK  N+LL      K+ DFG S   P   +     + GTL Y
Sbjct: 119 NALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAP---SSRRXXLCGTLDY 172

>pdb|3DAJ|A Chain A, Crystal Structure Of Aurora A Complexed With An Inhibitor Discovered Through Site-Directed Dynamic Tethering Length = 272

Iteration: 1
 Score = 43.9 bits (102), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 73/170 (42%), Gaps = 34/170 (20%)
Query: 104 NNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIE------QCINKVVVLSQI 157
            ++   R +G+G +G V+L     +K I   K  +++++Q+E      Q   +V + S +
Sbjct: 12  EDFDIGRPLGKGKFGNVYLARERQSKFILALK--VLFKTQLEKAGVEHQLRREVEIQSHL 69
Query: 158 NHRNVVGLLGCCLETEVPLLVNEFVKLPTISWEVR-------IRIAAETAE--------- 201
            H N++ L G   +     L+ E+  L T+  E++        R A    E         
Sbjct: 70  RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSRFDEQRTATYITELANALSYCH 129
Query: 202 -------DIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTLGY 244
                  DIK  N+LL  N   K+ DFG S   P   ++  T+  GTL Y
Sbjct: 130 SKRVIHRDIKPENLLLGSNGELKIADFGWSVHAP--SSRRDTLC-GTLDY 176

>pdb|1MUO|A Chain A, Crystal Structure Of Aurora-2, An Oncogenic Serine- Threonine Kinase Length = 297

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 72/172 (41%), Gaps = 34/172 (19%)
Query: 102 ATNNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIE------QCINKVVVLS 155
           A  ++   R +G+G +G V+L     +K I   K  +++++Q+E      Q   +V + S
Sbjct: 23  ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALK--VLFKAQLEKAGVEHQLRREVEIQS 80
Query: 156 QINHRNVVGLLGCCLETEVPLLVNEFVKLPTISWEVR-------IRIAAETAE------- 201
            + H N++ L G   +     L+ E+  L T+  E++        R A    E       
Sbjct: 81  HLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSY 140
Query: 202 ---------DIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTLGY 244
                    DIK  N+LL      K+ DFG S   P   +   T + GTL Y
Sbjct: 141 CHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAP---SSRRTTLCGTLDY 189

>pdb|3COH|A Chain A, Crystal Structure Of Aurora-A In Complex With A Pentacyclic Inhibitor Length = 268

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 73/172 (42%), Gaps = 34/172 (19%)
Query: 102 ATNNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIE------QCINKVVVLS 155
           A  ++   R +G+G +G V+L    ++K I   K  +++++Q+E      Q   +V + S
Sbjct: 6   ALEDFEIGRPLGKGKFGNVYLAREKNSKFILALK--VLFKAQLEKAGVEHQLRREVEIQS 63
Query: 156 QINHRNVVGLLGCCLETEVPLLVNEFVKLPTISWEVR-------IRIAAETAE------- 201
            + H N++ L G   ++    L+ E+  L T+  E++        R A    E       
Sbjct: 64  HLRHPNILRLYGYFHDSTRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSY 123
Query: 202 ---------DIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTLGY 244
                    DIK  N+LL      K+ DFG S   P   +     + GTL Y
Sbjct: 124 CHSKKVIHRDIKPENLLLGSAGELKIADFGWSVHAP---SSRRAALCGTLDY 172

>pdb|3PYY|A Chain A, Discovery And Characterization Of A Cell-Permeable, Small-Molecule C- Abl Kinase Activator That Binds To The Myristoyl Binding Site Length = 298

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/144 (25%), Positives = 59/144 (40%), Gaps = 25/144 (17%)
Query: 112 IGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLE 171
           +G G YG V+ G           K+      ++E+ + +  V+ +I H N+V LLG C  
Sbjct: 34  LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTR 93
Query: 172 TEVPLLVNEFVKLPTISWEVR------------------IRIAAETAE-------DIKSI 206
                ++ EF+    +   +R                  I  A E  E       D+ + 
Sbjct: 94  EPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLEKKNFIHRDLAAR 153
Query: 207 NILLDDNYTTKVCDFGASKLVPID 230
           N L+ +N+  KV DFG S+L+  D
Sbjct: 154 NCLVGENHLVKVADFGLSRLMTGD 177

>pdb|2C6E|A Chain A, Aurora A Kinase Activated Mutant (T287d) In Complex With A 5-Aminopyrimidinyl Quinazoline Inhibitor Length = 283

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 72/172 (41%), Gaps = 34/172 (19%)
Query: 102 ATNNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIE------QCINKVVVLS 155
           A  ++   R +G+G +G V+L     +K I   K  +++++Q+E      Q   +V + S
Sbjct: 11  ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALK--VLFKAQLEKAGVEHQLRREVEIQS 68
Query: 156 QINHRNVVGLLGCCLETEVPLLVNEFVKLPTISWEVR-------IRIAAETAE------- 201
            + H N++ L G   +     L+ E+  L T+  E++        R A    E       
Sbjct: 69  HLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSY 128
Query: 202 ---------DIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTLGY 244
                    DIK  N+LL      K+ DFG S   P   +   T + GTL Y
Sbjct: 129 CHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAP---SSRRTDLCGTLDY 177

>pdb|2QOB|A Chain A, Human Epha3 Kinase Domain, Base Structure Length = 344

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/186 (23%), Positives = 80/186 (43%), Gaps = 32/186 (17%)
Query: 86  GSSDTAKIFTAGELKIATNNYAYDRMIGRGGYGTVFLGSLS----DNKAIAIKKSRIVY- 140
           GS+ T   F A EL     N + D+++G G +G V  G L        ++AIK  ++ Y 
Sbjct: 1   GSTQTVHEF-AKELD--ATNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYT 57
Query: 141 QSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEFVKLPTISWEVRIRIAAETA 200
           + Q    + +  ++ Q +H N++ L G   +++  ++V E ++  ++   +R   A  T 
Sbjct: 58  EKQRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEXMENGSLDSFLRKHDAQFTV 117
Query: 201 ------------------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLST 236
                                    D+ + NIL++ N   KV DFG S+++  D     T
Sbjct: 118 IQLVGMLRGIASGMKYLSDMGYVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYT 177
Query: 237 MVQGTL 242
              G +
Sbjct: 178 TRGGKI 183

>pdb|2HZ0|A Chain A, Abl Kinase Domain In Complex With Nvp-Aeg082 Length = 270

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/144 (25%), Positives = 59/144 (40%), Gaps = 25/144 (17%)
Query: 112 IGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLE 171
           +G G YG V+ G           K+      ++E+ + +  V+ +I H N+V LLG C  
Sbjct: 21  LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTR 80
Query: 172 TEVPLLVNEFVKLPTISWEVR------------------IRIAAETAE-------DIKSI 206
                ++ EF+    +   +R                  I  A E  E       D+ + 
Sbjct: 81  EPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLEKKNFIHRDLAAR 140
Query: 207 NILLDDNYTTKVCDFGASKLVPID 230
           N L+ +N+  KV DFG S+L+  D
Sbjct: 141 NCLVGENHLVKVADFGLSRLMTGD 164

>pdb|2HZI|A Chain A, Abl Kinase Domain In Complex With Pd180970 Length = 277

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/144 (25%), Positives = 59/144 (40%), Gaps = 25/144 (17%)
Query: 112 IGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLE 171
           +G G YG V+ G           K+      ++E+ + +  V+ +I H N+V LLG C  
Sbjct: 25  LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTR 84
Query: 172 TEVPLLVNEFVKLPTISWEVR------------------IRIAAETAE-------DIKSI 206
                ++ EF+    +   +R                  I  A E  E       D+ + 
Sbjct: 85  EPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLEKKNFIHRDLAAR 144
Query: 207 NILLDDNYTTKVCDFGASKLVPID 230
           N L+ +N+  KV DFG S+L+  D
Sbjct: 145 NCLVGENHLVKVADFGLSRLMTGD 168

>pdb|3QRI|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain In Complex With Dcc- 2036 Length = 277

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/144 (25%), Positives = 59/144 (40%), Gaps = 25/144 (17%)
Query: 112 IGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLE 171
           +G G YG V+ G           K+      ++E+ + +  V+ +I H N+V LLG C  
Sbjct: 26  LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTR 85
Query: 172 TEVPLLVNEFVKLPTISWEVR------------------IRIAAETAE-------DIKSI 206
                ++ EF+    +   +R                  I  A E  E       D+ + 
Sbjct: 86  EPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLEKKNFIHRDLAAR 145
Query: 207 NILLDDNYTTKVCDFGASKLVPID 230
           N L+ +N+  KV DFG S+L+  D
Sbjct: 146 NCLVGENHLVKVADFGLSRLMTGD 169

>pdb|2QOH|A Chain A, Crystal Structure Of Abl Kinase Bound With Ppy-a Length = 288

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/144 (23%), Positives = 60/144 (41%), Gaps = 25/144 (17%)
Query: 112 IGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLE 171
           +G G YG V+ G           K+      ++E+ + +  V+ +I H N+V LLG C  
Sbjct: 21  LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTR 80
Query: 172 TEVPLLVNEFVKL------------PTISWEVRIRIAAETA-------------EDIKSI 206
                ++ EF+                +S  V + +A + +              D+ + 
Sbjct: 81  EPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKNFIHRDLAAR 140
Query: 207 NILLDDNYTTKVCDFGASKLVPID 230
           N L+ +N+  KV DFG S+L+  D
Sbjct: 141 NCLVGENHLVKVADFGLSRLMTGD 164

>pdb|2HYY|A Chain A, Human Abl Kinase Domain In Complex With Imatinib (Sti571, Glivec) Length = 273

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/144 (25%), Positives = 59/144 (40%), Gaps = 25/144 (17%)
Query: 112 IGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLE 171
           +G G YG V+ G           K+      ++E+ + +  V+ +I H N+V LLG C  
Sbjct: 21  LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTR 80
Query: 172 TEVPLLVNEFVKLPTISWEVR------------------IRIAAETAE-------DIKSI 206
                ++ EF+    +   +R                  I  A E  E       D+ + 
Sbjct: 81  EPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLEKKNFIHRDLAAR 140
Query: 207 NILLDDNYTTKVCDFGASKLVPID 230
           N L+ +N+  KV DFG S+L+  D
Sbjct: 141 NCLVGENHLVKVADFGLSRLMTGD 164

>pdb|3FDN|A Chain A, Structure-Based Drug Design Of Novel Aurora Kinase A Inhibitors: Structure Basis For Potency And Specificity Length = 279

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 72/172 (41%), Gaps = 34/172 (19%)
Query: 102 ATNNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIE------QCINKVVVLS 155
           A  ++   R +G+G +G V+L     +K I   K  +++++Q+E      Q   +V + S
Sbjct: 7   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALK--VLFKAQLEKAGVEHQLRREVEIQS 64
Query: 156 QINHRNVVGLLGCCLETEVPLLVNEFVKLPTISWEVR-------IRIAAETAE------- 201
            + H N++ L G   +     L+ E+  L T+  E++        R A    E       
Sbjct: 65  HLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSY 124
Query: 202 ---------DIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTLGY 244
                    DIK  N+LL      K+ DFG S   P   +   T + GTL Y
Sbjct: 125 CHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAP---SSRRTDLCGTLDY 173

>pdb|2J4Z|A Chain A, Structure Of Aurora-2 In Complex With Pha-680626 Length = 306

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 72/172 (41%), Gaps = 34/172 (19%)
Query: 102 ATNNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIE------QCINKVVVLS 155
           A  ++   R +G+G +G V+L     +K I   K  +++++Q+E      Q   +V + S
Sbjct: 32  ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALK--VLFKAQLEKAGVEHQLRREVEIQS 89
Query: 156 QINHRNVVGLLGCCLETEVPLLVNEFVKLPTISWEVR-------IRIAAETAE------- 201
            + H N++ L G   +     L+ E+  L T+  E++        R A    E       
Sbjct: 90  HLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSY 149
Query: 202 ---------DIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTLGY 244
                    DIK  N+LL      K+ DFG S   P   +   T + GTL Y
Sbjct: 150 CHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAP---SSRRTTLCGTLDY 198

>pdb|2C6D|A Chain A, Aurora A Kinase Activated Mutant (T287d) In Complex With Adpnp Length = 275

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 72/172 (41%), Gaps = 34/172 (19%)
Query: 102 ATNNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIE------QCINKVVVLS 155
           A  ++   R +G+G +G V+L     +K I   K  +++++Q+E      Q   +V + S
Sbjct: 6   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALK--VLFKAQLEKAGVEHQLRREVEIQS 63
Query: 156 QINHRNVVGLLGCCLETEVPLLVNEFVKLPTISWEVR-------IRIAAETAE------- 201
            + H N++ L G   +     L+ E+  L T+  E++        R A    E       
Sbjct: 64  HLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSY 123
Query: 202 ---------DIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTLGY 244
                    DIK  N+LL      K+ DFG S   P   +   T + GTL Y
Sbjct: 124 CHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAP---SSRRTDLCGTLDY 172

>pdb|3LAU|A Chain A, Crystal Structure Of Aurora2 Kinase In Complex With A Gsk3beta Inhibitor Length = 287

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 72/172 (41%), Gaps = 34/172 (19%)
Query: 102 ATNNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIE------QCINKVVVLS 155
           A  ++   R +G+G +G V+L     +K I   K  +++++Q+E      Q   +V + S
Sbjct: 6   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALK--VLFKAQLEKAGVEHQLRREVEIQS 63
Query: 156 QINHRNVVGLLGCCLETEVPLLVNEFVKLPTISWEVR-------IRIAAETAE------- 201
            + H N++ L G   +     L+ E+  L T+  E++        R A    E       
Sbjct: 64  HLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSY 123
Query: 202 ---------DIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTLGY 244
                    DIK  N+LL      K+ DFG S   P   +   T + GTL Y
Sbjct: 124 CHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAP---SSRRTDLCGTLDY 172

>pdb|2P0C|A Chain A, Catalytic Domain Of The Proto-Oncogene Tyrosine-Protein Kina Length = 313

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/156 (24%), Positives = 68/156 (43%), Gaps = 40/156 (25%)
Query: 110 RMIGRGGYGTVFLGSLSDNKA----IAIKKSRIVYQSQ--IEQCINKVVVLSQINHRNVV 163
           +++G G +G+V  G+L         +A+K  ++   SQ  IE+ +++   +   +H NV+
Sbjct: 40  KILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSSQREIEEFLSEAACMKDFSHPNVI 99
Query: 164 GLLGCCLETEV-----PLLVNEFVK-------------------LP---TISWEVRIRIA 196
            LLG C+E        P+++  F+K                   +P    + + V I + 
Sbjct: 100 RLLGVCIEMSSQGIPKPMVILPFMKYGDLHTYLLYSRLETGPKHIPLQTLLKFMVDIALG 159
Query: 197 AE-------TAEDIKSINILLDDNYTTKVCDFGASK 225
            E          D+ + N +L D+ T  V DFG SK
Sbjct: 160 MEYLSNRNFLHRDLAARNCMLRDDMTVCVADFGLSK 195

>pdb|2G1T|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine Kinase Domain Length = 287

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/144 (25%), Positives = 59/144 (40%), Gaps = 25/144 (17%)
Query: 112 IGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLE 171
           +G G YG V+ G           K+      ++E+ + +  V+ +I H N+V LLG C  
Sbjct: 23  LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTR 82
Query: 172 TEVPLLVNEFVKLPTISWEVR------------------IRIAAETAE-------DIKSI 206
                ++ EF+    +   +R                  I  A E  E       D+ + 
Sbjct: 83  EPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLEKKNFIHRDLAAR 142
Query: 207 NILLDDNYTTKVCDFGASKLVPID 230
           N L+ +N+  KV DFG S+L+  D
Sbjct: 143 NCLVGENHLVKVADFGLSRLMTGD 166

>pdb|1FPU|A Chain A, Crystal Structure Of Abl Kinase Domain In Complex With A Small Molecule Inhibitor Length = 293

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/144 (25%), Positives = 59/144 (40%), Gaps = 25/144 (17%)
Query: 112 IGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLE 171
           +G G YG V+ G           K+      ++E+ + +  V+ +I H N+V LLG C  
Sbjct: 26  LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTR 85
Query: 172 TEVPLLVNEFVKLPTISWEVR------------------IRIAAETAE-------DIKSI 206
                ++ EF+    +   +R                  I  A E  E       D+ + 
Sbjct: 86  EPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKNFIHRDLAAR 145
Query: 207 NILLDDNYTTKVCDFGASKLVPID 230
           N L+ +N+  KV DFG S+L+  D
Sbjct: 146 NCLVGENHLVKVADFGLSRLMTGD 169

>pdb|3OXZ|A Chain A, Crystal Structure Of Abl Kinase Domain Bound With A Dfg-Out Inhibitor Ap24534 Length = 284

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/144 (25%), Positives = 59/144 (40%), Gaps = 25/144 (17%)
Query: 112 IGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLE 171
           +G G YG V+ G           K+      ++E+ + +  V+ +I H N+V LLG C  
Sbjct: 21  LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTR 80
Query: 172 TEVPLLVNEFVKLPTISWEVR------------------IRIAAETAE-------DIKSI 206
                ++ EF+    +   +R                  I  A E  E       D+ + 
Sbjct: 81  EPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKNFIHRDLAAR 140
Query: 207 NILLDDNYTTKVCDFGASKLVPID 230
           N L+ +N+  KV DFG S+L+  D
Sbjct: 141 NCLVGENHLVKVADFGLSRLMTGD 164

>pdb|2GQG|A Chain A, X-Ray Crystal Structure Of Dasatinib (Bms-354825) Bound To Activated Abl Kinase Domain Length = 278

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/144 (25%), Positives = 59/144 (40%), Gaps = 25/144 (17%)
Query: 112 IGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLE 171
           +G G YG V+ G           K+      ++E+ + +  V+ +I H N+V LLG C  
Sbjct: 26  LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTR 85
Query: 172 TEVPLLVNEFVKLPTISWEVR------------------IRIAAETAE-------DIKSI 206
                ++ EF+    +   +R                  I  A E  E       D+ + 
Sbjct: 86  EPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLEKKNFIHRDLAAR 145
Query: 207 NILLDDNYTTKVCDFGASKLVPID 230
           N L+ +N+  KV DFG S+L+  D
Sbjct: 146 NCLVGENHLVKVADFGLSRLMTGD 169

>pdb|2QOK|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f:s768a Triple Mutant Length = 373

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/172 (20%), Positives = 75/172 (43%), Gaps = 29/172 (16%)
Query: 100 KIATNNYAYDRMIGRGGYGTVFLGSLS----DNKAIAIKKSRIVY-QSQIEQCINKVVVL 154
           ++   N + D+++G G +G V  G L        ++AIK  ++ Y + Q    + +  ++
Sbjct: 41  ELDATNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIM 100
Query: 155 SQINHRNVVGLLGCCLETEVPLLVNEFVKLPTISWEVRIRIAAETA-------------- 200
            Q +H N++ L G   +++  ++V E+++  ++   +R   A  T               
Sbjct: 101 GQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFTVIQLVGMLRGIASGM 160
Query: 201 ----------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTL 242
                      D+ + NIL++ N   KV DFG ++++  D     T   G +
Sbjct: 161 KYLSDMGYVHRDLAARNILINSNLVCKVSDFGLARVLEDDPEAAYTTRGGKI 212

>pdb|2HIW|A Chain A, Crystal Structure Of Inactive Conformation Abl Kinase Catalytic Domain Complexed With Type Ii Inhibitor Length = 287

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/144 (25%), Positives = 59/144 (40%), Gaps = 25/144 (17%)
Query: 112 IGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLE 171
           +G G YG V+ G           K+      ++E+ + +  V+ +I H N+V LLG C  
Sbjct: 23  LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTR 82
Query: 172 TEVPLLVNEFVKLPTISWEVR------------------IRIAAETAE-------DIKSI 206
                ++ EF+    +   +R                  I  A E  E       D+ + 
Sbjct: 83  EPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLEKKNFIHRDLAAR 142
Query: 207 NILLDDNYTTKVCDFGASKLVPID 230
           N L+ +N+  KV DFG S+L+  D
Sbjct: 143 NCLVGENHLVKVADFGLSRLMTGD 166

>pdb|3DK3|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex With Small Molecule Fragment Length = 293

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/144 (24%), Positives = 59/144 (40%), Gaps = 25/144 (17%)
Query: 112 IGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLE 171
           +G G YG V+ G           K+      ++E+ + +  V+ +I H N+V LLG C  
Sbjct: 19  LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTR 78
Query: 172 TEVPLLVNEFV------------------KLPTISWEVRIRIAAETAE-------DIKSI 206
                ++ EF+                   +  +    +I  A E  E       D+ + 
Sbjct: 79  EPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKNFIHRDLAAR 138
Query: 207 NILLDDNYTTKVCDFGASKLVPID 230
           N L+ +N+  KV DFG S+L+  D
Sbjct: 139 NCLVGENHLVKVADFGLSRLMTGD 162

>pdb|3NRM|A Chain A, Imidazo[1,2-A]pyrazine-Based Aurora Kinase Inhibitors Length = 283

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/177 (24%), Positives = 73/177 (41%), Gaps = 34/177 (19%)
Query: 97  GELKIATNNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIE------QCINK 150
           G  + A  ++   R +G+G +G V+L     +K I   K  +++++Q+E      Q   +
Sbjct: 4   GSRQWALEDFEIGRPLGKGKFGNVYLAREKQSKFILALK--VLFKAQLEKAGVEHQLRRE 61
Query: 151 VVVLSQINHRNVVGLLGCCLETEVPLLVNEFVKLPTISWEVR-------IRIAAETAE-- 201
           V + S + H N++ L G   +     L+ E+  L T+  E++        R A    E  
Sbjct: 62  VEIQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELA 121
Query: 202 --------------DIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTLGY 244
                         DIK  N+LL      K+ DFG S   P   +     + GTL Y
Sbjct: 122 NALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAP---SSRRAALCGTLDY 175

>pdb|2G2F|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine Kinase Domain Length = 287

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/144 (25%), Positives = 59/144 (40%), Gaps = 25/144 (17%)
Query: 112 IGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLE 171
           +G G YG V+ G           K+      ++E+ + +  V+ +I H N+V LLG C  
Sbjct: 23  LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTR 82
Query: 172 TEVPLLVNEFVKLPTISWEVR------------------IRIAAETAE-------DIKSI 206
                ++ EF+    +   +R                  I  A E  E       D+ + 
Sbjct: 83  EPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLEKKNFIHRDLAAR 142
Query: 207 NILLDDNYTTKVCDFGASKLVPID 230
           N L+ +N+  KV DFG S+L+  D
Sbjct: 143 NCLVGENHLVKVADFGLSRLMTGD 166

>pdb|2F4J|A Chain A, Structure Of The Kinase Domain Of An Imatinib-Resistant Abl Mutant In Complex With The Aurora Kinase Inhibitor Vx-680 Length = 287

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/144 (25%), Positives = 59/144 (40%), Gaps = 25/144 (17%)
Query: 112 IGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLE 171
           +G G YG V+ G           K+      ++E+ + +  V+ +I H N+V LLG C  
Sbjct: 22  LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTR 81
Query: 172 TEVPLLVNEFVKLPTISWEVR------------------IRIAAETAE-------DIKSI 206
                ++ EF+    +   +R                  I  A E  E       D+ + 
Sbjct: 82  EPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLEKKNFIHRDLAAR 141
Query: 207 NILLDDNYTTKVCDFGASKLVPID 230
           N L+ +N+  KV DFG S+L+  D
Sbjct: 142 NCLVGENHLVKVADFGLSRLMTGD 165

>pdb|2E2B|A Chain A, Crystal Structure Of The C-Abl Kinase Domain In Complex With Inno-406 Length = 293

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/144 (25%), Positives = 59/144 (40%), Gaps = 25/144 (17%)
Query: 112 IGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLE 171
           +G G YG V+ G           K+      ++E+ + +  V+ +I H N+V LLG C  
Sbjct: 26  LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTR 85
Query: 172 TEVPLLVNEFVKLPTISWEVR------------------IRIAAETAE-------DIKSI 206
                ++ EF+    +   +R                  I  A E  E       D+ + 
Sbjct: 86  EPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLEKKNFIHRDLAAR 145
Query: 207 NILLDDNYTTKVCDFGASKLVPID 230
           N L+ +N+  KV DFG S+L+  D
Sbjct: 146 NCLVGENHLVKVADFGLSRLMTGD 169

>pdb|3R21|A Chain A, Design, Synthesis, And Biological Evaluation Of Pyrazolopyridine- Sulfonamides As Potent Multiple-Mitotic Kinase (Mmk) Inhibitors (Part I) Length = 271

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 67/161 (41%), Gaps = 31/161 (19%)
Query: 97  GELKIATNNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIE------QCINK 150
           G  + A  ++   R +G+G +G V+L     +K I   K  +++++Q+E      Q   +
Sbjct: 4   GSRQWALEDFEIGRPLGKGKFGNVYLAREKQSKFILALK--VLFKAQLEKAGVEHQLRRE 61
Query: 151 VVVLSQINHRNVVGLLGCCLETEVPLLVNEFVKLPTISWEVR-------IRIAAETAE-- 201
           V + S + H N++ L G   +     L+ E+  L T+  E++        R A    E  
Sbjct: 62  VEIQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELA 121
Query: 202 --------------DIKSINILLDDNYTTKVCDFGASKLVP 228
                         DIK  N+LL      K+ DFG S   P
Sbjct: 122 NALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAP 162

>pdb|2QOL|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596:y602:s768g Triple Mutant Length = 373

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/172 (20%), Positives = 74/172 (43%), Gaps = 29/172 (16%)
Query: 100 KIATNNYAYDRMIGRGGYGTVFLGSLS----DNKAIAIKKSRIVY-QSQIEQCINKVVVL 154
           ++   N + D+++G G +G V  G L        ++AIK  ++ Y + Q    + +  ++
Sbjct: 41  ELDATNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIM 100
Query: 155 SQINHRNVVGLLGCCLETEVPLLVNEFVKLPTISWEVRIRIAAETA-------------- 200
            Q +H N++ L G   +++  ++V E+++  ++   +R   A  T               
Sbjct: 101 GQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFTVIQLVGMLRGIASGM 160
Query: 201 ----------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTL 242
                      D+ + NIL++ N   KV DFG  +++  D     T   G +
Sbjct: 161 KYLSDMGYVHRDLAARNILINSNLVCKVSDFGLGRVLEDDPEAAYTTRGGKI 212

>pdb|3Q96|A Chain A, B-Raf Kinase Domain In Complex With A Tetrahydronaphthalene Inhibitor Length = 282

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/159 (22%), Positives = 65/159 (40%), Gaps = 39/159 (24%)
Query: 95  TAGELKIATNNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVL 154
           ++ + +I        + IG G +GTV+ G    + A+ +         Q++   N+V VL
Sbjct: 1   SSDDWEIPDGQITVGQRIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVL 60
Query: 155 SQINHRNVVGLLGCCLETEVPLLVN------------------EFVKLPTISWEVRIRIA 196
            +  H N++  +G   + ++ ++                    E +KL        I IA
Sbjct: 61  RKTRHVNILLFMGYSTKPQLAIVTQWCEGSSLYHHLHIIETKFEMIKL--------IDIA 112
Query: 197 AETAE-------------DIKSINILLDDNYTTKVCDFG 222
            +TA+             D+KS NI L ++ T K+ DFG
Sbjct: 113 RQTAQGMDYLHAKSIIHRDLKSNNIFLHEDLTVKIGDFG 151

>pdb|2W1C|A Chain A, Structure Determination Of Aurora Kinase In Complex With Inhibitor Length = 275

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 71/172 (41%), Gaps = 34/172 (19%)
Query: 102 ATNNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIE------QCINKVVVLS 155
           A  ++   R +G+G +G V+L     +K I   K  +++++Q+E      Q   +V + S
Sbjct: 9   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALK--VLFKAQLEKAGVEHQLRREVEIQS 66
Query: 156 QINHRNVVGLLGCCLETEVPLLVNEFVKLPTISWEVR-------IRIAAETAE------- 201
            + H N++ L G   +     L+ E+  L T+  E++        R A    E       
Sbjct: 67  HLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSY 126
Query: 202 ---------DIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTLGY 244
                    DIK  N+LL      K+ DFG S   P   +     + GTL Y
Sbjct: 127 CHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAP---SSRRXXLCGTLDY 175

>pdb|3OEZ|A Chain A, Crystal Structure Of The L317i Mutant Of The Chicken C-Src Tyrosine Kinase Domain Complexed With Imatinib Length = 286

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/145 (22%), Positives = 69/145 (47%), Gaps = 27/145 (18%)
Query: 112 IGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLE 171
           +G+G +G V++G+ +    +AIK  +    S  E  + +  V+ +I H  +V L     E
Sbjct: 26  LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSP-EAFLQEAQVMKKIRHEKLVQLYAVVSE 84
Query: 172 TEVPLL----------------VNEFVKLPTISWEVRIRIAAETA---------EDIKSI 206
             + ++                + ++++LP +  ++  +IA+  A          D+++ 
Sbjct: 85  EPIYIVTEYMSKGSLLDFLKGEMGKYLRLPQLV-DMAAQIASGMAYVERMNYVHRDLRAA 143
Query: 207 NILLDDNYTTKVCDFGASKLVPIDE 231
           NIL+ +N   KV DFG ++L+  +E
Sbjct: 144 NILVGENLVCKVADFGLARLIEDNE 168

>pdb|3H0Y|A Chain A, Aurora A In Complex With A Bisanilinopyrimidine Length = 268

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 71/172 (41%), Gaps = 34/172 (19%)
Query: 102 ATNNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIE------QCINKVVVLS 155
           A  ++   R +G+G +G V+L     +K I   K  +++++Q+E      Q   +V + S
Sbjct: 6   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALK--VLFKAQLEKAGVEHQLRREVEIQS 63
Query: 156 QINHRNVVGLLGCCLETEVPLLVNEFVKLPTISWEVR-------IRIAAETAE------- 201
            + H N++ L G   +     L+ E+  L T+  E++        R A    E       
Sbjct: 64  HLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSY 123
Query: 202 ---------DIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTLGY 244
                    DIK  N+LL      K+ DFG S   P   +     + GTL Y
Sbjct: 124 CHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAP---SSRRAALCGTLDY 172

>pdb|2QON|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f:y742a Triple Mutant Length = 373

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/172 (21%), Positives = 74/172 (43%), Gaps = 29/172 (16%)
Query: 100 KIATNNYAYDRMIGRGGYGTVFLGSLS----DNKAIAIKKSRIVY-QSQIEQCINKVVVL 154
           ++   N + D+++G G +G V  G L        ++AIK  ++ Y + Q    + +  ++
Sbjct: 41  ELDATNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIM 100
Query: 155 SQINHRNVVGLLGCCLETEVPLLVNEFVKLPTISWEVRIRIAAETA-------------- 200
            Q +H N++ L G   +++  ++V E ++  ++   +R   A  T               
Sbjct: 101 GQFDHPNIIRLEGVVTKSKPVMIVTEXMENGSLDSFLRKHDAQFTVIQLVGMLRGIASGM 160
Query: 201 ----------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTL 242
                      D+ + NIL++ N   KV DFG S+++  D     T   G +
Sbjct: 161 KYLSDMGAVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTTRGGKI 212

>pdb|2FB8|A Chain A, Structure Of The B-Raf Kinase Domain Bound To Sb-590885 Length = 281

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/159 (22%), Positives = 65/159 (40%), Gaps = 39/159 (24%)
Query: 95  TAGELKIATNNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVL 154
           ++ + +I        + IG G +GTV+ G    + A+ +         Q++   N+V VL
Sbjct: 4   SSDDWEIPDGQITVGQRIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVL 63
Query: 155 SQINHRNVVGLLGCCLETEVPLLVN------------------EFVKLPTISWEVRIRIA 196
            +  H N++  +G   + ++ ++                    E +KL        I IA
Sbjct: 64  RKTRHVNILLFMGYSTKPQLAIVTQWCEGSSLYHHLHIIETKFEMIKL--------IDIA 115
Query: 197 AETAE-------------DIKSINILLDDNYTTKVCDFG 222
            +TA+             D+KS NI L ++ T K+ DFG
Sbjct: 116 RQTAQGMDYLHAKSIIHRDLKSNNIFLHEDLTVKIGDFG 154

>pdb|3RP9|A Chain A, Crystal Structure Of The Apo Mapk From Toxoplasma Gondii, 25.M01780 Or Tgme49_007820 Length = 458

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/160 (24%), Positives = 71/160 (44%), Gaps = 30/160 (18%)
Query: 103 TNNYAYDRMIGRGGYGTVFLG-SLSDNKAIAIKKSRIVYQSQIE--QCINKVVVLSQINH 159
            + Y    +IG G YG V       + + +AIKK   V++  I+  + + ++ +L+++NH
Sbjct: 52  PDRYEIRHLIGTGSYGHVCEAYDKLEKRVVAIKKILRVFEDLIDCKRILREIAILNRLNH 111
Query: 160 RNVVGLLGCCLETEVP----------LLVNEFVKL---PTISWEVRIRI----------- 195
            +VV +L   +  +V           +  ++F KL   P    E+ I+            
Sbjct: 112 DHVVKVLDIVIPKDVEKFDELYVVLEIADSDFKKLFRTPVYLTELHIKTLLYNLLVGVKY 171
Query: 196 ---AAETAEDIKSINILLDDNYTTKVCDFGASKLVPIDET 232
              A     D+K  N L++ + + KVCDFG ++ V   E 
Sbjct: 172 VHSAGILHRDLKPANCLVNQDCSVKVCDFGLARTVDYPEN 211

>pdb|3G6H|A Chain A, Src Thr338ile Inhibited In The Dfg-Asp-Out Conformation Length = 286

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/145 (22%), Positives = 69/145 (47%), Gaps = 27/145 (18%)
Query: 112 IGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLE 171
           +G+G +G V++G+ +    +AIK  +    S  E  + +  V+ ++ H  +V L     E
Sbjct: 26  LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSP-EAFLQEAQVMKKLRHEKLVQLYAVVSE 84
Query: 172 TEVPLLVN----------------EFVKLPTISWEVRIRIAAETA---------EDIKSI 206
             + +++                 ++++LP +  ++  +IA+  A          D+++ 
Sbjct: 85  EPIYIVIEYMSKGSLLDFLKGEMGKYLRLPQLV-DMAAQIASGMAYVERMNYVHRDLRAA 143
Query: 207 NILLDDNYTTKVCDFGASKLVPIDE 231
           NIL+ +N   KV DFG ++L+  +E
Sbjct: 144 NILVGENLVCKVADFGLARLIEDNE 168

>pdb|2QO7|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Dephosphorylated, Amp-Pnp Bound Length = 373

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/172 (21%), Positives = 74/172 (43%), Gaps = 29/172 (16%)
Query: 100 KIATNNYAYDRMIGRGGYGTVFLGSLS----DNKAIAIKKSRIVY-QSQIEQCINKVVVL 154
           ++   N + D+++G G +G V  G L        ++AIK  ++ Y + Q    + +  ++
Sbjct: 41  ELDATNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIM 100
Query: 155 SQINHRNVVGLLGCCLETEVPLLVNEFVKLPTISWEVRIRIAAETA-------------- 200
            Q +H N++ L G   +++  ++V E ++  ++   +R   A  T               
Sbjct: 101 GQFDHPNIIRLEGVVTKSKPVMIVTEXMENGSLDSFLRKHDAQFTVIQLVGMLRGIASGM 160
Query: 201 ----------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTL 242
                      D+ + NIL++ N   KV DFG S+++  D     T   G +
Sbjct: 161 KYLSDMGYVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTTRGGKI 212

>pdb|3DQW|A Chain A, C-Src Kinase Domain Thr338ile Mutant In Complex With Atpgs Length = 286

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/145 (22%), Positives = 69/145 (47%), Gaps = 27/145 (18%)
Query: 112 IGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLE 171
           +G+G +G V++G+ +    +AIK  +    S  E  + +  V+ ++ H  +V L     E
Sbjct: 26  LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSP-EAFLQEAQVMKKLRHEKLVQLYAVVSE 84
Query: 172 TEVPLLVN----------------EFVKLPTISWEVRIRIAAETA---------EDIKSI 206
             + +++                 ++++LP +  ++  +IA+  A          D+++ 
Sbjct: 85  EPIYIVIEYMSKGSLLDFLKGEMGKYLRLPQLV-DMAAQIASGMAYVERMNYVHRDLRAA 143
Query: 207 NILLDDNYTTKVCDFGASKLVPIDE 231
           NIL+ +N   KV DFG ++L+  +E
Sbjct: 144 NILVGENLVCKVADFGLARLIEDNE 168

>pdb|3II5|A Chain A, The Complex Of Wild-Type B-Raf With Pyrazolo Pyrimidine Inhibitor Length = 306

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/159 (22%), Positives = 65/159 (40%), Gaps = 39/159 (24%)
Query: 95  TAGELKIATNNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVL 154
           ++ + +I        + IG G +GTV+ G    + A+ +         Q++   N+V VL
Sbjct: 26  SSDDWEIPDGQITVGQRIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVL 85
Query: 155 SQINHRNVVGLLGCCLETEVPLLVN------------------EFVKLPTISWEVRIRIA 196
            +  H N++  +G   + ++ ++                    E +KL        I IA
Sbjct: 86  RKTRHVNILLFMGYSTKPQLAIVTQWCEGSSLYHHLHIIETKFEMIKL--------IDIA 137
Query: 197 AETAE-------------DIKSINILLDDNYTTKVCDFG 222
            +TA+             D+KS NI L ++ T K+ DFG
Sbjct: 138 RQTAQGMDYLHAKSIIHRDLKSNNIFLHEDLTVKIGDFG 176

>pdb|4DBN|A Chain A, Crystal Structure Of The Kinase Domain Of Human B-Raf With A [1, 3]thiazolo[5,4-B]pyridine Derivative Length = 284

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/159 (22%), Positives = 65/159 (40%), Gaps = 39/159 (24%)
Query: 95  TAGELKIATNNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVL 154
           ++ + +I        + IG G +GTV+ G    + A+ +         Q++   N+V VL
Sbjct: 4   SSDDWEIPDGQITVGQRIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVL 63
Query: 155 SQINHRNVVGLLGCCLETEVPLLVN------------------EFVKLPTISWEVRIRIA 196
            +  H N++  +G   + ++ ++                    E +KL        I IA
Sbjct: 64  RKTRHVNILLFMGYSTKPQLAIVTQWCEGSSLYHHLHIIETKFEMIKL--------IDIA 115
Query: 197 AETAE-------------DIKSINILLDDNYTTKVCDFG 222
            +TA+             D+KS NI L ++ T K+ DFG
Sbjct: 116 RQTAQGMDYLHAKSIIHRDLKSNNIFLHEDLTVKIGDFG 154

>pdb|3IDP|A Chain A, B-Raf V600e Kinase Domain In Complex With An Aminoisoquinoline Inhibitor Length = 300

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/159 (22%), Positives = 65/159 (40%), Gaps = 39/159 (24%)
Query: 95  TAGELKIATNNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVL 154
           ++ + +I        + IG G +GTV+ G    + A+ +         Q++   N+V VL
Sbjct: 19  SSDDWEIPDGQITVGQRIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVL 78
Query: 155 SQINHRNVVGLLGCCLETEVPLLVN------------------EFVKLPTISWEVRIRIA 196
            +  H N++  +G   + ++ ++                    E +KL        I IA
Sbjct: 79  RKTRHVNILLFMGYSTKPQLAIVTQWCEGSSLYHHLHIIETKFEMIKL--------IDIA 130
Query: 197 AETAE-------------DIKSINILLDDNYTTKVCDFG 222
            +TA+             D+KS NI L ++ T K+ DFG
Sbjct: 131 RQTAQGMDYLHAKSIIHRDLKSNNIFLHEDLTVKIGDFG 169

>pdb|3TXO|A Chain A, Pkc Eta Kinase In Complex With A Naphthyridine Length = 353

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/154 (25%), Positives = 65/154 (42%), Gaps = 28/154 (18%)
Query: 100 KIATNNYAYDRMIGRGGYGTVFLGSLSDNKAI----AIKKSRIVYQSQIEQCINKVVVLS 155
           ++  +N+ + R++G+G +G V L  + +   +     +KK  I+    +E  + +  +LS
Sbjct: 19  RLGIDNFEFIRVLGKGSFGKVMLARVKETGDLYAVKVLKKDVILQDDDVECTMTEKRILS 78
Query: 156 QINHRNVVGLLGCCLETEVPLL-VNEFVKLPTISW---------EVRIRI-AAETA---- 200
              +   +  L CC +T   L  V EFV    + +         E R R  AAE      
Sbjct: 79  LARNHPFLTQLFCCFQTPDRLFFVMEFVNGGDLMFHIQKSRRFDEARARFYAAEIISALM 138
Query: 201 ---------EDIKSINILLDDNYTTKVCDFGASK 225
                     D+K  N+LLD     K+ DFG  K
Sbjct: 139 FLHDKGIIYRDLKLDNVLLDHEGHCKLADFGMCK 172

>pdb|3OG7|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With Plx4032 Length = 289

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/151 (23%), Positives = 63/151 (41%), Gaps = 23/151 (15%)
Query: 95  TAGELKIATNNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVL 154
            A + +I        + IG G +GTV+ G    + A+ +         Q++   N+V VL
Sbjct: 15  AADDWEIPDGQITVGQRIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVL 74
Query: 155 SQINHRNVVGLLGCCLETEVPLLVN--------EFVKLPTISWEVR--IRIAAETA---- 200
            +  H N++  +G     ++ ++            +      +E++  I IA +TA    
Sbjct: 75  RKTRHVNILLFMGYSTAPQLAIVTQWCEGSSLYHHLHASETKFEMKKLIDIARQTARGMD 134
Query: 201 ---------EDIKSINILLDDNYTTKVCDFG 222
                     D+KS NI L ++ T K+ DFG
Sbjct: 135 YLHAKSIIHRDLKSNNIFLHEDNTVKIGDFG 165

>pdb|4FK3|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With Plx3203 Length = 292

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/151 (22%), Positives = 65/151 (43%), Gaps = 23/151 (15%)
Query: 95  TAGELKIATNNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVL 154
           ++ + +I        + IG G +GTV+ G    + A+ +         Q++   N+V VL
Sbjct: 15  SSDDWEIPDGQITVGQRIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVL 74
Query: 155 SQINHRNVVGLLGCCLETEVPLLVN--------EFVKLPTISWEVR--IRIAAETA---- 200
            +  H N++  +G   + ++ ++            +      +E++  I IA +TA    
Sbjct: 75  RKTRHVNILLFMGYSTKPQLAIVTQWCEGSSLYHHLHASETKFEMKKLIDIARQTARGMD 134
Query: 201 ---------EDIKSINILLDDNYTTKVCDFG 222
                     D+KS NI L ++ T K+ DFG
Sbjct: 135 YLHAKSIIHRDLKSNNIFLHEDNTVKIGDFG 165

>pdb|3UNZ|A Chain A, Aurora A In Complex With Rpm1679 Length = 279

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 73/172 (42%), Gaps = 34/172 (19%)
Query: 102 ATNNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIE------QCINKVVVLS 155
           A  ++   R +G+G +G V+L     +K I   K  +++++Q+E      Q   +V + S
Sbjct: 7   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALK--VLFKAQLEKAGVEHQLRREVEIQS 64
Query: 156 QINHRNVVGLLGCCLETEVPLLVNEFVKLPTISWEVR-------IRIAAETAE------- 201
            + H N++ L G   +     L+ E+  L T+  E++        R A    E       
Sbjct: 65  HLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSY 124
Query: 202 ---------DIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTLGY 244
                    DIK  N+LL      K+ DFG S   P   ++  T+  GTL Y
Sbjct: 125 CHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAP--SSRRDTLC-GTLDY 173

>pdb|1OL5|A Chain A, Structure Of Aurora-A 122-403, Phosphorylated On Thr287, Thr288 And Bound To Tpx2 1-43 Length = 282

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 71/172 (41%), Gaps = 34/172 (19%)
Query: 102 ATNNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIE------QCINKVVVLS 155
           A  ++   R +G+G +G V+L     +K I   K  +++++Q+E      Q   +V + S
Sbjct: 8   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALK--VLFKAQLEKAGVEHQLRREVEIQS 65
Query: 156 QINHRNVVGLLGCCLETEVPLLVNEFVKLPTISWEVR-------IRIAAETAE------- 201
            + H N++ L G   +     L+ E+  L T+  E++        R A    E       
Sbjct: 66  HLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSY 125
Query: 202 ---------DIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTLGY 244
                    DIK  N+LL      K+ DFG S   P   +     + GTL Y
Sbjct: 126 CHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAP---SSRRXXLCGTLDY 174

>pdb|3KUL|B Chain B, Kinase Domain Of Human Ephrin Type-A Receptor 8 (Epha8) Length = 325

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/172 (20%), Positives = 70/172 (40%), Gaps = 29/172 (16%)
Query: 100 KIATNNYAYDRMIGRGGYGTVFLGSL----SDNKAIAIKKSRIVY-QSQIEQCINKVVVL 154
           +I  +    +++IG G  G V  G L      +  +AIK  +  Y + Q    +++  ++
Sbjct: 45  EIEASRIHIEKIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGYTERQRRDFLSEASIM 104
Query: 155 SQINHRNVVGLLGCCLETEVPLLVNEFVKLPTISWEVRIRIAAET--------------- 199
            Q +H N++ L G      + ++V E+++  ++   +R      T               
Sbjct: 105 GQFDHPNIIRLEGVVTRGRLAMIVTEYMENGSLDTFLRTHDGQFTIMQLVGMLRGVGAGM 164
Query: 200 ---------AEDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTL 242
                      D+ + N+L+D N   KV DFG S+++  D     T   G +
Sbjct: 165 RYLSDLGYVHRDLAARNVLVDSNLVCKVSDFGLSRVLEDDPDAAXTTTGGKI 216

>pdb|3C4C|A Chain A, B-Raf Kinase In Complex With Plx4720 Length = 280

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/151 (22%), Positives = 65/151 (43%), Gaps = 23/151 (15%)
Query: 95  TAGELKIATNNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVL 154
           ++ + +I        + IG G +GTV+ G    + A+ +         Q++   N+V VL
Sbjct: 3   SSDDWEIPDGQITVGQRIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVL 62
Query: 155 SQINHRNVVGLLGCCLETEVPLLVN--------EFVKLPTISWEVR--IRIAAETA---- 200
            +  H N++  +G   + ++ ++            +      +E++  I IA +TA    
Sbjct: 63  RKTRHVNILLFMGYSTKPQLAIVTQWCEGSSLYHHLHASETKFEMKKLIDIARQTARGMD 122
Query: 201 ---------EDIKSINILLDDNYTTKVCDFG 222
                     D+KS NI L ++ T K+ DFG
Sbjct: 123 YLHAKSIIHRDLKSNNIFLHEDNTVKIGDFG 153

>pdb|2XNE|A Chain A, Structure Of Aurora-A Bound To An Imidazopyrazine Inhibitor Length = 272

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 72/172 (41%), Gaps = 34/172 (19%)
Query: 102 ATNNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIE------QCINKVVVLS 155
           A  ++   R +G+G +G V+L     +K I   K  +++++Q+E      Q   +V + S
Sbjct: 9   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALK--VLFKAQLEKAGVEHQLRREVEIQS 66
Query: 156 QINHRNVVGLLGCCLETEVPLLVNEFVKLPTISWEVR-------IRIAAETAE------- 201
            + H N++ L G   +     L+ E+  L T+  E++        R A    E       
Sbjct: 67  HLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSY 126
Query: 202 ---------DIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTLGY 244
                    DIK  N+LL      K+ +FG S   P   +   T + GTL Y
Sbjct: 127 CHSKRVIHRDIKPENLLLGSAGELKIANFGWSVHAP---SSRRTTLCGTLDY 175

>pdb|1YI6|A Chain A, C-Term Tail Segment Of Human Tyrosine Kinase (258-533) Length = 276

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/145 (22%), Positives = 68/145 (46%), Gaps = 27/145 (18%)
Query: 112 IGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLE 171
           +G+G +G V++G+ +    +AIK  +    S  E  + +  V+ ++ H  +V L     E
Sbjct: 16  LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSP-EAFLQEAQVMKKLRHEKLVQLYAVVSE 74
Query: 172 TEVPLLVN----------------EFVKLPTISWEVRIRIAAETA---------EDIKSI 206
             + ++                  ++++LP +  ++  +IA+  A          D+++ 
Sbjct: 75  EPIXIVTEYMSKGSLLDFLKGETGKYLRLPQLV-DMAAQIASGMAYVERMNYVHRDLRAA 133
Query: 207 NILLDDNYTTKVCDFGASKLVPIDE 231
           NIL+ +N   KV DFG ++L+  +E
Sbjct: 134 NILVGENLVCKVADFGLARLIEDNE 158

>pdb|3NIE|A Chain A, Crystal Structure Of Pf11_0147 Length = 429

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/161 (22%), Positives = 72/161 (44%), Gaps = 32/161 (19%)
Query: 102 ATNNYAYDRMIGRGGYGTVFLG-SLSDNKAIAIKKSRIVYQSQIE--QCINKVVVLSQIN 158
             +NY    +IGRG YG V+L    + NK +AIKK   +++  I+  + + ++ +L+++ 
Sbjct: 26  VPDNYEIKHLIGRGSYGYVYLAYDKNANKNVAIKKVNRMFEDLIDCKRILREITILNRLK 85
Query: 159 HRNVVGLLGCCLETEV-----------------------PLLVNEFVKLPTISW-----E 190
              ++ L    +  ++                       P+ + E   + TI +     E
Sbjct: 86  SDYIIRLHDLIIPEDLLKFDELYIVLEIADSDLKKLFKTPIFLTE-QHVKTILYNLLLGE 144
Query: 191 VRIRIAAETAEDIKSINILLDDNYTTKVCDFGASKLVPIDE 231
             I  +     D+K  N LL+ + + K+CDFG ++ +  D+
Sbjct: 145 KFIHESGIIHRDLKPANCLLNQDCSVKICDFGLARTINSDK 185

>pdb|1Y57|A Chain A, Structure Of Unphosphorylated C-Src In Complex With An Inhibitor Length = 452

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/145 (22%), Positives = 68/145 (46%), Gaps = 27/145 (18%)
Query: 112 IGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLE 171
           +G+G +G V++G+ +    +AIK  +    S  E  + +  V+ ++ H  +V L     E
Sbjct: 192 LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSP-EAFLQEAQVMKKLRHEKLVQLYAVVSE 250
Query: 172 TEVPLLVN----------------EFVKLPTISWEVRIRIAAETA---------EDIKSI 206
             + ++                  ++++LP +  ++  +IA+  A          D+++ 
Sbjct: 251 EPIYIVTEYMSKGSLLDFLKGETGKYLRLPQLV-DMAAQIASGMAYVERMNYVHRDLRAA 309
Query: 207 NILLDDNYTTKVCDFGASKLVPIDE 231
           NIL+ +N   KV DFG ++L+  +E
Sbjct: 310 NILVGENLVCKVADFGLARLIEDNE 334

>pdb|2Z60|A Chain A, Crystal Structure Of The T315i Mutant Of Abl Kinase Bound With Ppy-A Length = 288

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/144 (25%), Positives = 59/144 (40%), Gaps = 25/144 (17%)
Query: 112 IGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLE 171
           +G G YG V+ G           K+      ++E+ + +  V+ +I H N+V LLG C  
Sbjct: 21  LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTR 80
Query: 172 TEVPLLVNEFVKLPTISWEVR------------------IRIAAETAE-------DIKSI 206
                ++ EF+    +   +R                  I  A E  E       D+ + 
Sbjct: 81  EPPFYIIIEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKNFIHRDLAAR 140
Query: 207 NILLDDNYTTKVCDFGASKLVPID 230
           N L+ +N+  KV DFG S+L+  D
Sbjct: 141 NCLVGENHLVKVADFGLSRLMTGD 164

>pdb|3QRJ|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain T315i Mutant In Complex With Dcc-2036 Length = 277

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/144 (25%), Positives = 59/144 (40%), Gaps = 25/144 (17%)
Query: 112 IGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLE 171
           +G G YG V+ G           K+      ++E+ + +  V+ +I H N+V LLG C  
Sbjct: 26  LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTR 85
Query: 172 TEVPLLVNEFVKLPTISWEVR------------------IRIAAETAE-------DIKSI 206
                ++ EF+    +   +R                  I  A E  E       D+ + 
Sbjct: 86  EPPFYIIIEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLEKKNFIHRDLAAR 145
Query: 207 NILLDDNYTTKVCDFGASKLVPID 230
           N L+ +N+  KV DFG S+L+  D
Sbjct: 146 NCLVGENHLVKVADFGLSRLMTGD 169

>pdb|3OY3|A Chain A, Crystal Structure Of Abl T315i Mutant Kinase Domain Bound With A Dfg- Out Inhibitor Ap24589 Length = 284

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/144 (25%), Positives = 59/144 (40%), Gaps = 25/144 (17%)
Query: 112 IGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLE 171
           +G G YG V+ G           K+      ++E+ + +  V+ +I H N+V LLG C  
Sbjct: 21  LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTR 80
Query: 172 TEVPLLVNEFVKLPTISWEVR------------------IRIAAETAE-------DIKSI 206
                ++ EF+    +   +R                  I  A E  E       D+ + 
Sbjct: 81  EPPFYIIIEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKNFIHRDLAAR 140
Query: 207 NILLDDNYTTKVCDFGASKLVPID 230
           N L+ +N+  KV DFG S+L+  D
Sbjct: 141 NCLVGENHLVKVADFGLSRLMTGD 164

>pdb|2QQ7|A Chain A, Crystal Structure Of Drug Resistant Src Kinase Domain With Irreversible Inhibitor Length = 286

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/145 (22%), Positives = 69/145 (47%), Gaps = 27/145 (18%)
Query: 112 IGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLE 171
           +G+G +G V++G+ +    +AIK  +    S  E  + +  V+ ++ H  +V L     E
Sbjct: 26  LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSP-EAFLQEAQVMKKLRHEKLVQLYAVVSE 84
Query: 172 TEVPLLVN----------------EFVKLPTISWEVRIRIAAETA---------EDIKSI 206
             + +++                 ++++LP +  ++  +IA+  A          D+++ 
Sbjct: 85  EPIYIVMEYMSKGCLLDFLKGEMGKYLRLPQLV-DMAAQIASGMAYVERMNYVHRDLRAA 143
Query: 207 NILLDDNYTTKVCDFGASKLVPIDE 231
           NIL+ +N   KV DFG ++L+  +E
Sbjct: 144 NILVGENLVCKVADFGLARLIEDNE 168

>pdb|1OL6|A Chain A, Structure Of Unphosphorylated D274n Mutant Of Aurora-a Length = 282

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 72/172 (41%), Gaps = 34/172 (19%)
Query: 102 ATNNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIE------QCINKVVVLS 155
           A  ++   R +G+G +G V+L     +K I   K  +++++Q+E      Q   +V + S
Sbjct: 8   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALK--VLFKAQLEKAGVEHQLRREVEIQS 65
Query: 156 QINHRNVVGLLGCCLETEVPLLVNEFVKLPTISWEVR-------IRIAAETAE------- 201
            + H N++ L G   +     L+ E+  L T+  E++        R A    E       
Sbjct: 66  HLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSY 125
Query: 202 ---------DIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTLGY 244
                    DIK  N+LL      K+ +FG S   P   +   T + GTL Y
Sbjct: 126 CHSKRVIHRDIKPENLLLGSAGELKIANFGWSVHAP---SSRRTTLCGTLDY 174

>pdb|1UWJ|A Chain A, The Complex Of Mutant V599e B-raf And Bay439006 Length = 276

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/156 (23%), Positives = 63/156 (40%), Gaps = 39/156 (25%)
Query: 98  ELKIATNNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQI 157
           + +I        + IG G +GTV+ G    + A+ +         Q++   N+V VL + 
Sbjct: 2   DWEIPDGQITVGQRIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKT 61
Query: 158 NHRNVVGLLGCCLETEVPLLVN------------------EFVKLPTISWEVRIRIAAET 199
            H N++  +G   + ++ ++                    E +KL        I IA +T
Sbjct: 62  RHVNILLFMGYSTKPQLAIVTQWCEGSSLYHHLHIIETKFEMIKL--------IDIARQT 113
Query: 200 AE-------------DIKSINILLDDNYTTKVCDFG 222
           A+             D+KS NI L ++ T K+ DFG
Sbjct: 114 AQGMDYLHAKSIIHRDLKSNNIFLHEDLTVKIGDFG 149

>pdb|3DK7|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex With Small Molecule Fragment Length = 277

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/144 (25%), Positives = 59/144 (40%), Gaps = 25/144 (17%)
Query: 112 IGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLE 171
           +G G YG V+ G           K+      ++E+ + +  V+ +I H N+V LLG C  
Sbjct: 19  LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTR 78
Query: 172 TEVPLLVNEFVKLPTISWEVR------------------IRIAAETAE-------DIKSI 206
                ++ EF+    +   +R                  I  A E  E       D+ + 
Sbjct: 79  EPPFYIIIEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKNFIHRDLAAR 138
Query: 207 NILLDDNYTTKVCDFGASKLVPID 230
           N L+ +N+  KV DFG S+L+  D
Sbjct: 139 NCLVGENHLVKVADFGLSRLMTGD 162

>pdb|1FMK|A Chain A, Crystal Structure Of Human Tyrosine-Protein Kinase C-Src Length = 452

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/145 (22%), Positives = 68/145 (46%), Gaps = 27/145 (18%)
Query: 112 IGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLE 171
           +G+G +G V++G+ +    +AIK  +    S  E  + +  V+ ++ H  +V L     E
Sbjct: 192 LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSP-EAFLQEAQVMKKLRHEKLVQLYAVVSE 250
Query: 172 TEVPLLVN----------------EFVKLPTISWEVRIRIAAETA---------EDIKSI 206
             + ++                  ++++LP +  ++  +IA+  A          D+++ 
Sbjct: 251 EPIYIVTEYMSKGSLLDFLKGETGKYLRLPQLV-DMAAQIASGMAYVERMNYVHRDLRAA 309
Query: 207 NILLDDNYTTKVCDFGASKLVPIDE 231
           NIL+ +N   KV DFG ++L+  +E
Sbjct: 310 NILVGENLVCKVADFGLARLIEDNE 334

>pdb|4H58|A Chain A, Braf In Complex With Compound 3 Length = 275

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 36/156 (23%), Positives = 63/156 (40%), Gaps = 39/156 (25%)
Query: 98  ELKIATNNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQI 157
           + +I        + IG G +GTV+ G    + A+ +         Q++   N+V VL + 
Sbjct: 2   DWEIPDGQITVGQRIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKT 61
Query: 158 NHRNVVGLLGCCLETEVPLLVN------------------EFVKLPTISWEVRIRIAAET 199
            H N++  +G   + ++ ++                    E +KL        I IA +T
Sbjct: 62  RHVNILLFMGYSTKPQLAIVTQWCEGSSLYHHLHIIETKFEMIKL--------IDIARQT 113
Query: 200 AE-------------DIKSINILLDDNYTTKVCDFG 222
           A+             D+KS NI L ++ T K+ DFG
Sbjct: 114 AQGMDYLHAKSIIHRDLKSNNIFLHEDLTVKIGDFG 149

>pdb|3SVV|A Chain A, Crystal Structure Of T338c C-Src Covalently Bound To Vinylsulfonamide- Pyrazolopyrimidine 9 Length = 286

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/145 (22%), Positives = 69/145 (47%), Gaps = 27/145 (18%)
Query: 112 IGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLE 171
           +G+G +G V++G+ +    +AIK  +    S  E  + +  V+ ++ H  +V L     E
Sbjct: 26  LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSP-EAFLQEAQVMKKLRHEKLVQLYAVVSE 84
Query: 172 TEVPLL----------------VNEFVKLPTISWEVRIRIAAETA---------EDIKSI 206
             + ++                + ++++LP +  ++  +IA+  A          D+++ 
Sbjct: 85  EPIYIVCEYMSKGSLLDFLKGEMGKYLRLPQLV-DMAAQIASGMAYVERMNYVHRDLRAA 143
Query: 207 NILLDDNYTTKVCDFGASKLVPIDE 231
           NIL+ +N   KV DFG ++L+  +E
Sbjct: 144 NILVGENLVCKVADFGLARLIEDNE 168

>pdb|2OIQ|A Chain A, Crystal Structure Of Chicken C-Src Kinase Domain In Complex With The Cancer Drug Imatinib. Length = 286

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/145 (22%), Positives = 69/145 (47%), Gaps = 27/145 (18%)
Query: 112 IGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLE 171
           +G+G +G V++G+ +    +AIK  +    S  E  + +  V+ ++ H  +V L     E
Sbjct: 26  LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSP-EAFLQEAQVMKKLRHEKLVQLYAVVSE 84
Query: 172 TEVPLL----------------VNEFVKLPTISWEVRIRIAAETA---------EDIKSI 206
             + ++                + ++++LP +  ++  +IA+  A          D+++ 
Sbjct: 85  EPIYIVTEYMSKGSLLDFLKGEMGKYLRLPQLV-DMAAQIASGMAYVERMNYVHRDLRAA 143
Query: 207 NILLDDNYTTKVCDFGASKLVPIDE 231
           NIL+ +N   KV DFG ++L+  +E
Sbjct: 144 NILVGENLVCKVADFGLARLIEDNE 168

>pdb|1KSW|A Chain A, Structure Of Human C-Src Tyrosine Kinase (Thr338gly Mutant) In Complex With N6-Benzyl Adp Length = 452

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/145 (22%), Positives = 68/145 (46%), Gaps = 27/145 (18%)
Query: 112 IGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLE 171
           +G+G +G V++G+ +    +AIK  +    S  E  + +  V+ ++ H  +V L     E
Sbjct: 192 LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSP-EAFLQEAQVMKKLRHEKLVQLYAVVSE 250
Query: 172 TEVPLL----------------VNEFVKLPTISWEVRIRIAAETA---------EDIKSI 206
             + ++                  ++++LP +  ++  +IA+  A          D+++ 
Sbjct: 251 EPIYIVGEYMSKGSLLDFLKGETGKYLRLPQLV-DMAAQIASGMAYVERMNYVHRDLRAA 309
Query: 207 NILLDDNYTTKVCDFGASKLVPIDE 231
           NIL+ +N   KV DFG ++L+  +E
Sbjct: 310 NILVGENLVCKVADFGLARLIEDNE 334

>pdb|2HWO|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With Covalent Inhibitor Length = 286

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/145 (22%), Positives = 69/145 (47%), Gaps = 27/145 (18%)
Query: 112 IGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLE 171
           +G+G +G V++G+ +    +AIK  +    S  E  + +  V+ ++ H  +V L     E
Sbjct: 26  LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSP-EAFLQEAQVMKKLRHEKLVQLYAVVSE 84
Query: 172 TEVPLL----------------VNEFVKLPTISWEVRIRIAAETA---------EDIKSI 206
             + ++                + ++++LP +  ++  +IA+  A          D+++ 
Sbjct: 85  EPIYIVTEYMSKGCLLDFLKGEMGKYLRLPQLV-DMAAQIASGMAYVERMNYVHRDLRAA 143
Query: 207 NILLDDNYTTKVCDFGASKLVPIDE 231
           NIL+ +N   KV DFG ++L+  +E
Sbjct: 144 NILVGENLVCKVADFGLARLIEDNE 168

>pdb|3D7U|B Chain B, Structural Basis For The Recognition Of C-Src By Its Inactivator Csk Length = 277

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/145 (22%), Positives = 69/145 (47%), Gaps = 27/145 (18%)
Query: 112 IGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLE 171
           +G+G +G V++G+ +    +AIK  +    S  E  + +  V+ ++ H  +V L     E
Sbjct: 17  LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSP-EAFLQEAQVMKKLRHEKLVQLYAVVSE 75
Query: 172 TEVPLL----------------VNEFVKLPTISWEVRIRIAAETA---------EDIKSI 206
             + ++                + ++++LP +  ++  +IA+  A          D+++ 
Sbjct: 76  EPIYIVTEYMSKGSLLDFLKGEMGKYLRLPQLV-DMAAQIASGMAYVERMNYVHRDLRAA 134
Query: 207 NILLDDNYTTKVCDFGASKLVPIDE 231
           NIL+ +N   KV DFG ++L+  +E
Sbjct: 135 NILVGENLVCKVADFGLARLIEDNE 159

>pdb|1F3M|C Chain C, Crystal Structure Of Human SerineTHREONINE KINASE PAK1 Length = 297

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 73/150 (48%), Gaps = 23/150 (15%)
Query: 112 IGRGGYGTVFLG-SLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCL 170
           IG+G  GTV+    ++  + +AI++  +  Q + E  IN+++V+ +  + N+V  L   L
Sbjct: 28  IGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYL 87
Query: 171 ETEVPLLVNEFV---KLPTISWEVRI---RIAAETAE----------------DIKSINI 208
             +   +V E++    L  +  E  +   +IAA   E                DIKS NI
Sbjct: 88  VGDELWVVMEYLAGGSLTDVVTETCMDEGQIAAVCRECLQALEFLHSNQVIHRDIKSDNI 147
Query: 209 LLDDNYTTKVCDFGASKLVPIDETQLSTMV 238
           LL  + + K+ DFG    +  ++++ STMV
Sbjct: 148 LLGMDGSVKLTDFGFCAQITPEQSKRSTMV 177

>pdb|3U4W|A Chain A, Src In Complex With Dna-Templated Macrocyclic Inhibitor Mc4b Length = 275

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/145 (22%), Positives = 69/145 (47%), Gaps = 27/145 (18%)
Query: 112 IGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLE 171
           +G+G +G V++G+ +    +AIK  +    S  E  + +  V+ ++ H  +V L     E
Sbjct: 15  LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSP-EAFLQEAQVMKKLRHEKLVQLYAVVSE 73
Query: 172 TEVPLL----------------VNEFVKLPTISWEVRIRIAAETA---------EDIKSI 206
             + ++                + ++++LP +  ++  +IA+  A          D+++ 
Sbjct: 74  EPIYIVTEYMSKGSLLDFLKGEMGKYLRLPQLV-DMAAQIASGMAYVERMNYVHRDLRAA 132
Query: 207 NILLDDNYTTKVCDFGASKLVPIDE 231
           NIL+ +N   KV DFG ++L+  +E
Sbjct: 133 NILVGENLVCKVADFGLARLIEDNE 157

>pdb|2DQ7|X Chain X, Crystal Structure Of Fyn Kinase Domain Complexed With Staurosporine Length = 283

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 34/148 (22%), Positives = 68/148 (45%), Gaps = 29/148 (19%)
Query: 110 RMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCC 169
           + +G G +G V++G+ + N  +AIK  +    S  E  + +  ++ ++ H  +V L    
Sbjct: 15  KRLGNGQFGEVWMGTWNGNTKVAIKTLKPGTMSP-ESFLEEAQIMKKLKHDKLVQLYAVV 73
Query: 170 LETEVPLLVNEFV-----------------KLPTISWEVRIRIAAETA---------EDI 203
            E  +  +V E++                 KLP +  ++  ++AA  A          D+
Sbjct: 74  SEEPI-YIVTEYMNKGSLLDFLKDGEGRALKLPNLV-DMAAQVAAGMAYIERMNYIHRDL 131
Query: 204 KSINILLDDNYTTKVCDFGASKLVPIDE 231
           +S NIL+ +    K+ DFG ++L+  +E
Sbjct: 132 RSANILVGNGLICKIADFGLARLIEDNE 159

>pdb|2V7A|A Chain A, Crystal Structure Of The T315i Abl Mutant In Complex With The Inhibitor Pha-739358 Length = 286

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 36/144 (25%), Positives = 59/144 (40%), Gaps = 25/144 (17%)
Query: 112 IGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLE 171
           +G G YG V+ G           K+      ++E+ + +  V+ +I H N+V LLG C  
Sbjct: 22  LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTR 81
Query: 172 TEVPLLVNEFVKLPTISWEVR------------------IRIAAETAE-------DIKSI 206
                ++ EF+    +   +R                  I  A E  E       D+ + 
Sbjct: 82  EPPFYIIIEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLEKKNFIHRDLAAR 141
Query: 207 NILLDDNYTTKVCDFGASKLVPID 230
           N L+ +N+  KV DFG S+L+  D
Sbjct: 142 NCLVGENHLVKVADFGLSRLMTGD 165

>pdb|1YOJ|A Chain A, Crystal Structure Of Src Kinase Domain Length = 283

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/145 (22%), Positives = 68/145 (46%), Gaps = 27/145 (18%)
Query: 112 IGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLE 171
           +G+G +G V++G+ +    +AIK  +    S  E  + +  V+ ++ H  +V L     E
Sbjct: 23  LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSP-EAFLQEAQVMKKLRHEKLVQLYAVVSE 81
Query: 172 TEVPLLVN----------------EFVKLPTISWEVRIRIAAETA---------EDIKSI 206
             + ++                  ++++LP +  ++  +IA+  A          D+++ 
Sbjct: 82  EPIYIVTEYMNKGSLLDFLKGETGKYLRLPQLV-DMSAQIASGMAYVERMNYVHRDLRAA 140
Query: 207 NILLDDNYTTKVCDFGASKLVPIDE 231
           NIL+ +N   KV DFG ++L+  +E
Sbjct: 141 NILVGENLVCKVADFGLARLIEDNE 165

>pdb|3KUL|A Chain A, Kinase Domain Of Human Ephrin Type-A Receptor 8 (Epha8) Length = 325

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 36/172 (20%), Positives = 70/172 (40%), Gaps = 29/172 (16%)
Query: 100 KIATNNYAYDRMIGRGGYGTVFLGSL----SDNKAIAIKKSRIVY-QSQIEQCINKVVVL 154
           +I  +    +++IG G  G V  G L      +  +AIK  +  Y + Q    +++  ++
Sbjct: 45  EIEASRIHIEKIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGYTERQRRDFLSEASIM 104
Query: 155 SQINHRNVVGLLGCCLETEVPLLVNEFVKLPTISWEVRIRIAAET--------------- 199
            Q +H N++ L G      + ++V E+++  ++   +R      T               
Sbjct: 105 GQFDHPNIIRLEGVVTRGRLAMIVTEYMENGSLDTFLRTHDGQFTIMQLVGMLRGVGAGM 164
Query: 200 ---------AEDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTL 242
                      D+ + N+L+D N   KV DFG S+++  D     T   G +
Sbjct: 165 RYLSDLGYVHRDLAARNVLVDSNLVCKVSDFGLSRVLEDDPDAAYTTTGGKI 216

>pdb|3DK6|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex With Small Molecule Fragment Length = 293

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 34/144 (23%), Positives = 59/144 (40%), Gaps = 25/144 (17%)
Query: 112 IGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLE 171
           +G G +G V+ G           K+      ++E+ + +  V+ +I H N+V LLG C  
Sbjct: 19  LGGGQFGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTR 78
Query: 172 TEVPLLVNEFV------------------KLPTISWEVRIRIAAETAE-------DIKSI 206
                ++ EF+                   +  +    +I  A E  E       D+ + 
Sbjct: 79  EPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKNFIHRDLAAR 138
Query: 207 NILLDDNYTTKVCDFGASKLVPID 230
           N L+ +N+  KV DFG S+L+  D
Sbjct: 139 NCLVGENHLVKVADFGLSRLMTGD 162

>pdb|3QUP|A Chain A, Inhibitor Bound Structure Of The Kinase Domain Of The Murine Receptor Tyrosine Kinase Tyro3 (Sky) Length = 323

Iteration: 1
 Score = 41.6 bits (96), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 36/166 (21%), Positives = 67/166 (40%), Gaps = 41/166 (24%)
Query: 101 IATNNYAYDRMIGRGGYGTVFLGSLSDNK------AIAIKKSRIVYQSQIEQCINKVVVL 154
           I    +   RM+G+G +G+V    L          A+ + K+ I+  S IE+ + +   +
Sbjct: 20  IPEQQFTLGRMLGKGEFGSVREAQLKQEDGSFVKVAVKMLKADIIASSDIEEFLREAACM 79
Query: 155 SQINHRNVVGLLGCCLETE------VPLLVNEFVK-------------------LP---T 186
            + +H +V  L+G  L +       +P+++  F+K                   LP    
Sbjct: 80  KEFDHPHVAKLVGVSLRSRAKGRLPIPMVILPFMKHGDLHAFLLASRIGENPFNLPLQTL 139
Query: 187 ISWEVRIRIAAE-------TAEDIKSINILLDDNYTTKVCDFGASK 225
           + + V I    E          D+ + N +L ++ T  V DFG S+
Sbjct: 140 VRFMVDIACGMEYLSSRNFIHRDLAARNCMLAEDMTVCVADFGLSR 185

>pdb|2H8H|A Chain A, Src Kinase In Complex With A Quinazoline Inhibitor Length = 535

Iteration: 1
 Score = 41.6 bits (96), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 32/145 (22%), Positives = 68/145 (46%), Gaps = 27/145 (18%)
Query: 112 IGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLE 171
           +G+G +G V++G+ +    +AIK  +    S  E  + +  V+ ++ H  +V L     E
Sbjct: 275 LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSP-EAFLQEAQVMKKLRHEKLVQLYAVVSE 333
Query: 172 TEVPLLVN----------------EFVKLPTISWEVRIRIAAETA---------EDIKSI 206
             + ++                  ++++LP +  ++  +IA+  A          D+++ 
Sbjct: 334 EPIYIVTEYMSKGSLLDFLKGETGKYLRLPQLV-DMAAQIASGMAYVERMNYVHRDLRAA 392
Query: 207 NILLDDNYTTKVCDFGASKLVPIDE 231
           NIL+ +N   KV DFG ++L+  +E
Sbjct: 393 NILVGENLVCKVADFGLARLIEDNE 417

>pdb|1YOL|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With Cgp77675 Length = 283

Iteration: 1
 Score = 41.6 bits (96), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 32/145 (22%), Positives = 68/145 (46%), Gaps = 27/145 (18%)
Query: 112 IGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLE 171
           +G+G +G V++G+ +    +AIK  +    S  E  + +  V+ ++ H  +V L     E
Sbjct: 23  LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSP-EAFLQEAQVMKKLRHEKLVQLYAVVSE 81
Query: 172 TEVPLLVN----------------EFVKLPTISWEVRIRIAAETA---------EDIKSI 206
             + ++                  ++++LP +  ++  +IA+  A          D+++ 
Sbjct: 82  EPIYIVTEYMNKGSLLDFLKGETGKYLRLPQLV-DMSAQIASGMAYVERMNYVHRDLRAA 140
Query: 207 NILLDDNYTTKVCDFGASKLVPIDE 231
           NIL+ +N   KV DFG ++L+  +E
Sbjct: 141 NILVGENLVCKVADFGLARLIEDNE 165

>pdb|2PTK|A Chain A, Chicken Src Tyrosine Kinase Length = 453

Iteration: 1
 Score = 41.6 bits (96), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 32/145 (22%), Positives = 68/145 (46%), Gaps = 27/145 (18%)
Query: 112 IGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLE 171
           +G+G +G V++G+ +    +AIK  +    S  E  + +  V+ ++ H  +V L     E
Sbjct: 193 LGQGCFGEVWMGTWNGTTRVAIKTLKPGNMSP-EAFLQEAQVMKKLRHEKLVQLYAVVSE 251
Query: 172 TEVPLL----------------VNEFVKLPTISWEVRIRIAAETA---------EDIKSI 206
             + ++                + ++++LP +  ++  +IA+  A          D+++ 
Sbjct: 252 EPIYIVTEYMSKGSLLDFLKGEMGKYLRLPQLV-DMAAQIASGMAYVERMNYVHRDLRAA 310
Query: 207 NILLDDNYTTKVCDFGASKLVPIDE 231
           NIL+ +N   KV DFG  +L+  +E
Sbjct: 311 NILVGENLVCKVADFGLGRLIEDNE 335

>pdb|3PG1|A Chain A, Map Kinase Lmampk10 From Leishmania Major (1.95 Angs Resolution) Length = 362

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 40/168 (23%), Positives = 68/168 (40%), Gaps = 39/168 (23%)
Query: 97  GELKIATNNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKK----------SRIVYQSQI-E 145
            EL    + Y   R I  G YG V  G  S+   +AIK+            I+  S + +
Sbjct: 15  AELHAMQSPYTVQRFISSGSYGAVCAGVDSEGIPVAIKRVFNTVSDGRTVNILSDSFLCK 74
Query: 146 QCINKVVVLSQINHRNVVGLLGCCLETEVP-----LLVNEFVK--LPTISWEVRIRIAAE 198
           + + ++ +L+  +H N++GL    +  E P      LV E ++  L  +  + RI I+ +
Sbjct: 75  RVLREIRLLNHFHHPNILGLRDIFVHFEEPAMHKLYLVTELMRTDLAQVIHDQRIVISPQ 134
Query: 199 TAE---------------------DIKSINILLDDNYTTKVCDFGASK 225
             +                     D+   NILL DN    +CDF  ++
Sbjct: 135 HIQYFMYHILLGLHVLHEAGVVHRDLHPGNILLADNNDITICDFNLAR 182

>pdb|2BDF|A Chain A, Src Kinase In Complex With Inhibitor Ap23451 Length = 279

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 32/145 (22%), Positives = 68/145 (46%), Gaps = 27/145 (18%)
Query: 112 IGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLE 171
           +G+G +G V++G+ +    +AIK  +    S  E  + +  V+ ++ H  +V L     E
Sbjct: 19  LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSP-EAFLQEAQVMKKLRHEKLVQLYAVVSE 77
Query: 172 TEVPLLVN----------------EFVKLPTISWEVRIRIAAETA---------EDIKSI 206
             + ++                  ++++LP +  ++  +IA+  A          D+++ 
Sbjct: 78  EPIYIVTEYMSKGSLLDFLKGETGKYLRLPQLV-DMAAQIASGMAYVERMNYVHRDLRAA 136
Query: 207 NILLDDNYTTKVCDFGASKLVPIDE 231
           NIL+ +N   KV DFG ++L+  +E
Sbjct: 137 NILVGENLVCKVADFGLARLIEDNE 161

>pdb|1OPL|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine Kinase Length = 537

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 36/144 (25%), Positives = 60/144 (41%), Gaps = 25/144 (17%)
Query: 112 IGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLE 171
           +G G YG V+ G           K+      ++E+ + +  V+ +I H N+V LLG C  
Sbjct: 267 LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTR 326
Query: 172 TEVPLLVNEFVKLPTI--------SWEV----------RIRIAAETAE-------DIKSI 206
                ++ EF+    +          EV          +I  A E  E       ++ + 
Sbjct: 327 EPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLEKKNFIHRNLAAR 386
Query: 207 NILLDDNYTTKVCDFGASKLVPID 230
           N L+ +N+  KV DFG S+L+  D
Sbjct: 387 NCLVGENHLVKVADFGLSRLMTGD 410

>pdb|3UIB|A Chain A, Map Kinase Lmampk10 From Leishmania Major In Complex With Sb203580 Length = 362

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 40/168 (23%), Positives = 68/168 (40%), Gaps = 39/168 (23%)
Query: 97  GELKIATNNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKK----------SRIVYQSQI-E 145
            EL    + Y   R I  G YG V  G  S+   +AIK+            I+  S + +
Sbjct: 15  AELHAMQSPYTVQRFISSGSYGAVCAGVDSEGIPVAIKRVFNTVSDGRTVNILSDSFLCK 74
Query: 146 QCINKVVVLSQINHRNVVGLLGCCLETEVP-----LLVNEFVK--LPTISWEVRIRIAAE 198
           + + ++ +L+  +H N++GL    +  E P      LV E ++  L  +  + RI I+ +
Sbjct: 75  RVLREIRLLNHFHHPNILGLRDIFVHFEEPAMHKLYLVTELMRTDLAQVIHDQRIVISPQ 134
Query: 199 TAE---------------------DIKSINILLDDNYTTKVCDFGASK 225
             +                     D+   NILL DN    +CDF  ++
Sbjct: 135 HIQYFMYHILLGLHVLHEAGVVHRDLHPGNILLADNNDITICDFNLAR 182

>pdb|1OPK|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine Kinase Length = 495

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 36/144 (25%), Positives = 60/144 (41%), Gaps = 25/144 (17%)
Query: 112 IGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLE 171
           +G G YG V+ G           K+      ++E+ + +  V+ +I H N+V LLG C  
Sbjct: 228 LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTR 287
Query: 172 TEVPLLVNEFVKLPTI--------SWEV----------RIRIAAETAE-------DIKSI 206
                ++ EF+    +          EV          +I  A E  E       ++ + 
Sbjct: 288 EPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKNFIHRNLAAR 347
Query: 207 NILLDDNYTTKVCDFGASKLVPID 230
           N L+ +N+  KV DFG S+L+  D
Sbjct: 348 NCLVGENHLVKVADFGLSRLMTGD 371

>pdb|1UWH|A Chain A, The Complex Of Wild Type B-Raf And Bay439006 Length = 276

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 36/156 (23%), Positives = 62/156 (39%), Gaps = 39/156 (25%)
Query: 98  ELKIATNNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQI 157
           + +I        + IG G +GTV+ G    + A+ +         Q++   N+V VL + 
Sbjct: 2   DWEIPDGQITVGQRIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKT 61
Query: 158 NHRNVVGLLGCCLETEVPLLVN------------------EFVKLPTISWEVRIRIAAET 199
            H N++  +G     ++ ++                    E +KL        I IA +T
Sbjct: 62  RHVNILLFMGYSTAPQLAIVTQWCEGSSLYHHLHIIETKFEMIKL--------IDIARQT 113
Query: 200 AE-------------DIKSINILLDDNYTTKVCDFG 222
           A+             D+KS NI L ++ T K+ DFG
Sbjct: 114 AQGMDYLHAKSIIHRDLKSNNIFLHEDLTVKIGDFG 149

>pdb|3KXZ|A Chain A, The Complex Crystal Structure Of Lck With A Probe Molecule W259 Length = 287

Iteration: 1
 Score = 41.2 bits (95), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 33/171 (19%), Positives = 76/171 (44%), Gaps = 25/171 (14%)
Query: 85  SGSSDTAKIFTAGELKIATNNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQI 144
           S +    K +   E ++          +G G +G V++G  + +  +A+K  +    S  
Sbjct: 2   SQTQKPQKPWWEDEWEVPRETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSP- 60
Query: 145 EQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVN--------EFVKLPT---ISWEVRI 193
           +  + +  ++ Q+ H+ +V L     +  + ++          +F+K P+   ++    +
Sbjct: 61  DAFLAEANLMKQLQHQRLVRLYAVVTQEPIYIITEYMENGSLVDFLKTPSGIKLTINKLL 120
Query: 194 RIAAETAE-------------DIKSINILLDDNYTTKVCDFGASKLVPIDE 231
            +AA+ AE             D+++ NIL+ D  + K+ DFG ++L+  +E
Sbjct: 121 DMAAQIAEGMAFIEERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNE 171

>pdb|2BMC|A Chain A, Aurora-2 T287d T288d Complexed With Pha-680632 Length = 306

Iteration: 1
 Score = 40.8 bits (94), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 39/156 (25%), Positives = 65/156 (41%), Gaps = 31/156 (19%)
Query: 102 ATNNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIE------QCINKVVVLS 155
           A  ++   R +G+G +G V+L     +K I   K  +++++Q+E      Q   +V + S
Sbjct: 32  ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALK--VLFKAQLEKAGVEHQLRREVEIQS 89
Query: 156 QINHRNVVGLLGCCLETEVPLLVNEFVKLPTISWEVR-------IRIAAETAE------- 201
            + H N++ L G   +     L+ E+  L T+  E++        R A    E       
Sbjct: 90  HLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSY 149
Query: 202 ---------DIKSINILLDDNYTTKVCDFGASKLVP 228
                    DIK  N+LL      K+ DFG S   P
Sbjct: 150 CHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAP 185

>pdb|3OMV|A Chain A, Crystal Structure Of C-Raf (Raf-1) Length = 307

Iteration: 1
 Score = 40.8 bits (94), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 59/134 (44%), Gaps = 23/134 (17%)
Query: 112 IGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLE 171
           IG G +GTV+ G    + A+ I K       Q +   N+V VL +  H N++  +G   +
Sbjct: 44  IGSGSFGTVYKGKWHGDVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMTK 103
Query: 172 TEVPLLVN--------EFVKLPTISWEV--RIRIAAETAE-------------DIKSINI 208
             + ++          + + +    +++   I IA +TA+             D+KS NI
Sbjct: 104 DNLAIVTQWCEGSSLYKHLHVQETKFQMFQLIDIARQTAQGMDYLHAKNIIHRDMKSNNI 163
Query: 209 LLDDNYTTKVCDFG 222
            L +  T K+ DFG
Sbjct: 164 FLHEGLTVKIGDFG 177

>pdb|3OCT|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase Mutant V555r In Complex With Dasatinib Length = 265

Iteration: 1
 Score = 40.8 bits (94), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 39/160 (24%), Positives = 66/160 (41%), Gaps = 25/160 (15%)
Query: 96  AGELKIATNNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLS 155
            G  +I   +  + + +G G +G V  G       +AIK  +    S+ ++ I +  V+ 
Sbjct: 1   GGSWEIDPKDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSMSE-DEFIEEAKVMM 59
Query: 156 QINHRNVVGLLGCCLETEVPLLVNEFVK---LPTISWEVRIRI--------------AAE 198
            ++H  +V L G C +     ++ E++    L     E+R R               A E
Sbjct: 60  NLSHEKLVQLYGVCTKQRPIFIITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEAME 119
Query: 199 TAE-------DIKSINILLDDNYTTKVCDFGASKLVPIDE 231
             E       D+ + N L++D    KV DFG S+ V  DE
Sbjct: 120 YLESKQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDE 159

>pdb|3GEQ|A Chain A, Structural Basis For The Chemical Rescue Of Src Kinase Activity Length = 286

Iteration: 1
 Score = 40.4 bits (93), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 32/145 (22%), Positives = 68/145 (46%), Gaps = 27/145 (18%)
Query: 112 IGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLE 171
           +G+G +G V++G+ +    +AIK  +    S  E  + +  V+ ++ H  +V L     E
Sbjct: 26  LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSP-EAFLQEAQVMKKLRHEKLVQLYAVVSE 84
Query: 172 TEVPLL----------------VNEFVKLPTISWEVRIRIAAETA---------EDIKSI 206
             + ++                + ++++LP +  ++  +IA+  A          D+ + 
Sbjct: 85  EPIYIVTEYMSKGSLLDFLKGEMGKYLRLPQLV-DMAAQIASGMAYVERMNYVHRDLAAA 143
Query: 207 NILLDDNYTTKVCDFGASKLVPIDE 231
           NIL+ +N   KV DFG ++L+  +E
Sbjct: 144 NILVGENLVCKVADFGLARLIEDNE 168

>pdb|3OCS|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase In Complex With Inhibitor Cgi1746 Length = 271

Iteration: 1
 Score = 40.4 bits (93), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 39/159 (24%), Positives = 66/159 (41%), Gaps = 25/159 (15%)
Query: 97  GELKIATNNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQ 156
           G  +I   +  + + +G G +G V  G       +AIK  +    S+ ++ I +  V+  
Sbjct: 2   GSWEIDPKDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSMSE-DEFIEEAKVMMN 60
Query: 157 INHRNVVGLLGCCLETEVPLLVNEFVK---LPTISWEVRIRI--------------AAET 199
           ++H  +V L G C +     ++ E++    L     E+R R               A E 
Sbjct: 61  LSHEKLVQLYGVCTKQRPIFIITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEY 120
Query: 200 AE-------DIKSINILLDDNYTTKVCDFGASKLVPIDE 231
            E       D+ + N L++D    KV DFG S+ V  DE
Sbjct: 121 LESKQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDE 159

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	256
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	7e-48
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	6e-47
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	7e-43
3soc_A	322	Activin receptor type-2A; structural genomics cons	1e-30
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	2e-26
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	1e-25
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	3e-25
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	3e-25
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	9e-23
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	3e-22
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	3e-22
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	3e-22
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	5e-22
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	2e-20
3q4u_A	301	Activin receptor type-1; structural genomics conso	1e-19
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	2e-19
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	3e-19
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	1e-18
4apc_A	350	Serine/threonine-protein kinase NEK1; transferase;	1e-17
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	5e-17
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	5e-17
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	4e-16
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	2e-15
2a19_B	284	Interferon-induced, double-stranded RNA-activated	6e-15
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	9e-15
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	1e-14
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	1e-14
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	2e-14
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	3e-14
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	4e-14
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	7e-14
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	7e-14
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	8e-14
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	9e-14
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	1e-13
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	1e-13
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	2e-13
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	2e-13
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	2e-13
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	2e-13
3pls_A	298	Macrophage-stimulating protein receptor; protein k	2e-13
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	3e-13
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	4e-13
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	7e-13
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	1e-12
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	1e-12
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	1e-12
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	1e-12
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	1e-12
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	2e-12
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	2e-12
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	2e-12
3pvu_A	695	Beta-adrenergic receptor kinase 1; transferase, se	2e-12
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	2e-12
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	2e-12
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	2e-12
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	3e-12
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	3e-12
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	4e-12
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	7e-12
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	7e-12
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	8e-12
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	9e-12
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	1e-11
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	1e-11
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	2e-11
4aw2_A	437	Serine/threonine-protein kinase MRCK alpha; transf	2e-11
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	2e-11
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	2e-11
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	2e-11
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	3e-11
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	3e-11
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	3e-11
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	4e-11
2vd5_A	412	DMPK protein; serine/threonine-protein kinase, kin	4e-11
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	6e-11
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	6e-11
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	6e-11
4fr4_A	384	YANK1, serine/threonine-protein kinase 32A; struct	7e-11
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	7e-11
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	9e-11
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	1e-10
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	1e-10
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	1e-10
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	2e-10
1uu3_A	310	HPDK1, 3-phosphoinositide dependent protein kinase	2e-10
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	2e-10
4aoj_A	329	High affinity nerve growth factor receptor; transf	2e-10
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	2e-10
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	2e-10
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	2e-10
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	2e-10
3v8s_A	410	RHO-associated protein kinase 1; dimerization, myo	3e-10
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	4e-10
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	4e-10
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	8e-10
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	1e-09
3v5q_A	297	NT-3 growth factor receptor; kinase domain, kinase	1e-09
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	1e-09
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	1e-09
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	1e-09
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	2e-09
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	2e-09
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	2e-09
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	2e-09
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	2e-09
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	2e-09
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	2e-09
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	2e-09
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	3e-09
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	3e-09
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	4e-09
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	4e-09
1rdq_E	350	PKA C-alpha, CAMP-dependent protein kinase, alpha-	4e-09
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	5e-09
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	5e-09
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	8e-09
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	8e-09
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	8e-09
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	8e-09
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	9e-09
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	1e-08
1fot_A	318	TPK1 delta, CAMP-dependent protein kinase type 1;	1e-08
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	1e-08
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	2e-08
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	2e-08
1o6l_A	337	RAC-beta serine/threonine protein kinase; protein	2e-08
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	2e-08
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	2e-08
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	2e-08
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	3e-08
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	4e-08
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	4e-08
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	5e-08
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	5e-08
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	5e-08
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	5e-08
3zzw_A	289	Tyrosine-protein kinase transmembrane receptor RO;	6e-08
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	6e-08
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	6e-08
3a8x_A	345	Protein kinase C IOTA type; transferase; HET: TPO;	6e-08
4dc2_A	396	Protein kinase C IOTA type; kinase, substrate, cel	6e-08
3aln_A	327	Dual specificity mitogen-activated protein kinase;	7e-08
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	7e-08
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	8e-08
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	8e-08
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	9e-08
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	1e-07
3a62_A	327	Ribosomal protein S6 kinase beta-1; kinase domain,	1e-07
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	1e-07
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	1e-07
2zv2_A	298	Calcium/calmodulin-dependent protein kinase kinas;	1e-07
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	1e-07
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	2e-07
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	2e-07
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	2e-07
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	2e-07
3fme_A	290	Dual specificity mitogen-activated protein kinase;	2e-07
2eue_A	275	Carbon catabolite derepressing protein kinase; kin	2e-07
3g51_A	325	Ribosomal protein S6 kinase alpha-3; N-terminal ki	2e-07
3h4j_B	336	AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin	3e-07
3an0_A	340	Dual specificity mitogen-activated protein kinase;	3e-07
3txo_A	353	PKC-L, NPKC-ETA, protein kinase C ETA type; phosph	3e-07
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	4e-07
2r5t_A	373	Serine/threonine-protein kinase SGK1; AGC protein	5e-07
3e3p_A	360	Protein kinase, putative glycogen synthase kinase;	5e-07
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	5e-07
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	6e-07
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	7e-07
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	7e-07
1xjd_A	345	Protein kinase C, theta type; PKC-theta, ATP, AMP,	8e-07
3ork_A	311	Serine/threonine protein kinase; structural genomi	1e-06
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	1e-06
1ua2_A	346	CAK, cell division protein kinase 7; cell cycle, p	1e-06
2i0e_A	353	Protein kinase C-beta II; serine/threonine protein	2e-06
1vzo_A	355	Ribosomal protein S6 kinase alpha 5; protein kinas	2e-06
3uc3_A	361	Serine/threonine-protein kinase SRK2I; SNRK2, ABA	2e-06
2dyl_A	318	Dual specificity mitogen-activated protein kinase	2e-06
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	5e-06
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	5e-06
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	5e-06
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	6e-06
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	7e-06
3bhy_A	283	Death-associated protein kinase 3; death associate	9e-06
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	9e-06
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	1e-05
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	1e-05
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	2e-05
3niz_A	311	Rhodanese family protein; structural genomics, str	2e-05
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	2e-05
3uqc_A	286	Probable conserved transmembrane protein; structur	3e-05
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	6e-05
2pmi_A	317	Negative RE, cyclin-dependent protein kinase PHO85	6e-05
2r3i_A	299	Cell division protein kinase 2; serine/threonine-p	8e-05
3rgf_A	405	Cyclin-dependent kinase 8; protein kinase complex,	9e-05
3n9x_A	432	Phosphotransferase; malaria kinase, structural gen	9e-05
3o0g_A	292	Cell division protein kinase 5; kinase activator c	9e-05
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	1e-04
1ob3_A	288	PFPK5, cell division control protein 2 homolog; tr	1e-04
3gbz_A	329	Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-	1e-04
3rp9_A	458	Mitogen-activated protein kinase; structural genom	2e-04
2i6l_A	320	Mitogen-activated protein kinase 6; MAPK6, ERK3, e	2e-04
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	3e-04
3mtl_A	324	Cell division protein kinase 16; pctaire1, indirub	3e-04
1nxk_A	400	MAP kinase-activated protein kinase 2; MK2, phosph	3e-04
3pg1_A	362	Mitogen-activated protein kinase, putative (MAP K	3e-04
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	5e-04
3eb0_A	383	Putative uncharacterized protein; kinase cryptospo	7e-04
3g33_A	308	Cell division protein kinase 4; Ser/Thr protein ki	8e-04

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A* Length = 321

 Score =  160 bits (406), Expect = 7e-48
 Identities = 61/192 (31%), Positives = 93/192 (48%), Gaps = 28/192 (14%)

Query: 81  LSKRSGSSDTAKIFTAGELKIATNNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVY 140
           LS        +      +L+ ATNN+ +  +IG G +G V+ G L D   +A+K+     
Sbjct: 16  LSSSYLVPFESYRVPLVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPES 75

Query: 141 QSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEFV--------------KLPT 186
              IE+   ++  LS   H ++V L+G C E    +L+ +++                 +
Sbjct: 76  SQGIEEFETEIETLSFCRHPHLVSLIGFCDERNEMILIYKYMENGNLKRHLYGSDLPTMS 135

Query: 187 ISWEVRIRIAAETAE-------------DIKSINILLDDNYTTKVCDFGASKLVPI-DET 232
           +SWE R+ I    A              D+KSINILLD+N+  K+ DFG SK     D+T
Sbjct: 136 MSWEQRLEICIGAARGLHYLHTRAIIHRDVKSINILLDENFVPKITDFGISKKGTELDQT 195

Query: 233 QLSTMVQGTLGY 244
            LST+V+GTLGY
Sbjct: 196 HLSTVVKGTLGY 207

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3tl8_A* Length = 326

 Score =  157 bits (400), Expect = 6e-47
 Identities = 59/197 (29%), Positives = 98/197 (49%), Gaps = 35/197 (17%)

Query: 91  AKIFTAGELKIATNNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKK-SRIVYQSQIEQCIN 149
            K F+  EL++A++N++   ++GRGG+G V+ G L+D   +A+K+      Q    Q   
Sbjct: 17  LKRFSLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERTQGGELQFQT 76

Query: 150 KVVVLSQINHRNVVGLLGCCLETEVPLLVNEFV--------------KLPTISWEVRIRI 195
           +V ++S   HRN++ L G C+     LLV  ++                P + W  R RI
Sbjct: 77  EVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPESQPPLDWPKRQRI 136

Query: 196 AAETAE----------------DIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQ 239
           A  +A                 D+K+ NILLD+ +   V DFG +KL+   +T ++T V+
Sbjct: 137 ALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVR 196

Query: 240 GTLGY----YLHTSQGT 252
           GT+G+    YL T + +
Sbjct: 197 GTIGHIAPEYLSTGKSS 213

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A* Length = 307

 Score =  146 bits (372), Expect = 7e-43
 Identities = 53/197 (26%), Positives = 86/197 (43%), Gaps = 38/197 (19%)

Query: 85  SGSSDTAKIFTAGELKIATNN------YAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRI 138
             S      F+  ELK  TNN            +G GG+G V+ G + +N  +A+KK   
Sbjct: 6   EVSDTRFHSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV-NNTTVAVKKLAA 64

Query: 139 VYQSQIEQC----INKVVVLSQINHRNVVGLLGCCLETEVPLLVNEFV------------ 182
           +     E+       ++ V+++  H N+V LLG   + +   LV  ++            
Sbjct: 65  MVDITTEELKQQFDQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCL 124

Query: 183 -KLPTISWEVRIRIAAETAE-------------DIKSINILLDDNYTTKVCDFGASKLVP 228
              P +SW +R +IA   A              DIKS NILLD+ +T K+ DFG ++   
Sbjct: 125 DGTPPLSWHMRCKIAQGAANGINFLHENHHIHRDIKSANILLDEAFTAKISDFGLARASE 184

Query: 229 I-DETQLSTMVQGTLGY 244
              +T +++ + GT  Y
Sbjct: 185 KFAQTVMTSRIVGTTAY 201

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 2qlu_A* Length = 322

 Score =  115 bits (289), Expect = 1e-30
 Identities = 42/202 (20%), Positives = 64/202 (31%), Gaps = 41/202 (20%)

Query: 81  LSKRSGSSDTAKIFTAGELKIATNNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKK-SRIV 139
           +        +        L   +       +  RG +G V+   L  N+ +A+K      
Sbjct: 1   MGHHHHHHSSGVDLGTENLYFQSMPLQLLEVKARGRFGCVWKAQL-LNEYVAVKIFPIQD 59

Query: 140 YQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVP----LLVNEFV---------KLPT 186
            QS   Q   +V  L  + H N++  +G             L+  F          K   
Sbjct: 60  KQS--WQNEYEVYSLPGMKHENILQFIGAEKRGTSVDVDLWLITAFHEKGSLSDFLKANV 117

Query: 187 ISWEVRIRIAAETAE-----------------------DIKSINILLDDNYTTKVCDFGA 223
           +SW     IA   A                        DIKS N+LL +N T  + DFG 
Sbjct: 118 VSWNELCHIAETMARGLAYLHEDIPGLKDGHKPAISHRDIKSKNVLLKNNLTACIADFGL 177

Query: 224 SKLVPIDETQLSTMVQ-GTLGY 244
           +      ++   T  Q GT  Y
Sbjct: 178 ALKFEAGKSAGDTHGQVGTRRY 199

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens} Length = 336

 Score =  104 bits (260), Expect = 2e-26
 Identities = 42/195 (21%), Positives = 69/195 (35%), Gaps = 47/195 (24%)

Query: 94  FTAGELKIATNNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKK-SRIVYQSQIEQCINKVV 152
             A E  +  +N     +IGRG YG V+ GSL D + +A+K  S    Q+ I +    + 
Sbjct: 3   AAASEPSLDLDNLKLLELIGRGRYGAVYKGSL-DERPVAVKVFSFANRQNFINEK--NIY 59

Query: 153 VLSQINHRNVVGLLGCCLETEVP-----LLVNEF---------VKLPTISWEVRIRIAAE 198
            +  + H N+   +              LLV E+         + L T  W    R+A  
Sbjct: 60  RVPLMEHDNIARFIVGDERVTADGRMEYLLVMEYYPNGSLXKYLSLHTSDWVSSCRLAHS 119

Query: 199 TAE----------------------DIKSINILLDDNYTTKVCDFGASKLVPIDETQL-- 234
                                    D+ S N+L+ ++ T  + DFG S  +  +      
Sbjct: 120 VTRGLAYLHTELPRGDHYKPAISHRDLNSRNVLVKNDGTCVISDFGLSMRLTGNRLVRPG 179

Query: 235 -----STMVQGTLGY 244
                +    GT+ Y
Sbjct: 180 EEDNAAISEVGTIRY 194

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A* Length = 309

 Score =  101 bits (254), Expect = 1e-25
 Identities = 35/167 (20%), Positives = 66/167 (39%), Gaps = 32/167 (19%)

Query: 108 YDRMIGRGGYGTVFLGSLSDNKAIAIKKSRI--VYQSQIEQCINKVVVLSQINHRNVVGL 165
               IG G +GTV          +A+K       +  ++ + + +V ++ ++ H N+V  
Sbjct: 41  IKEKIGAGSFGTVHRAEW-HGSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIVLF 99

Query: 166 LGCCLETEVPLLVNEFVK-------------LPTISWEVRIRIAAETAE----------- 201
           +G   +     +V E++                 +    R+ +A + A+           
Sbjct: 100 MGAVTQPPNLSIVTEYLSRGSLYRLLHKSGAREQLDERRRLSMAYDVAKGMNYLHNRNPP 159

Query: 202 ----DIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTLGY 244
               ++KS N+L+D  YT KVCDFG S+L         +   GT  +
Sbjct: 160 IVHRNLKSPNLLVDKKYTVKVCDFGLSRLKASTFLSSKSAA-GTPEW 205

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens} Length = 307

 Score =  100 bits (250), Expect = 3e-25
 Identities = 42/168 (25%), Positives = 70/168 (41%), Gaps = 41/168 (24%)

Query: 108 YDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLG 167
            + ++GRG +G V        K +AIK+  I  +S+ +  I ++  LS++NH N+V L G
Sbjct: 12  VEEVVGRGAFGVVCKAKW-RAKDVAIKQ--IESESERKAFIVELRQLSRVNHPNIVKLYG 68

Query: 168 CCLETEVPL-LVNEFV-------------KLPTISWEVRIRIAAETAE------------ 201
            CL    P+ LV E+               LP  +    +    + ++            
Sbjct: 69  ACLN---PVCLVMEYAEGGSLYNVLHGAEPLPYYTAAHAMSWCLQCSQGVAYLHSMQPKA 125

Query: 202 ----DIKSINILLDDNYTT-KVCDFGASKLVPIDETQLSTMVQGTLGY 244
               D+K  N+LL    T  K+CDFG +     D     T  +G+  +
Sbjct: 126 LIHRDLKPPNLLLVAGGTVLKICDFGTAC----DIQTHMTNNKGSAAW 169

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A* Length = 287

 Score = 99.7 bits (249), Expect = 3e-25
 Identities = 43/176 (24%), Positives = 68/176 (38%), Gaps = 45/176 (25%)

Query: 108 YDRMIGRGGYGTVFLGS-LSDNKAIAIKK-------SRIVYQSQIEQCINKVVVLSQINH 159
           Y++ IG+GG+G V  G  + D   +AIK               + ++   +V ++S +NH
Sbjct: 23  YEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNH 82

Query: 160 RNVVGLLGCCLETEVPLLVNEFV-----------KLPTISWEVRIRIAAETAE------- 201
            N+V L G       P +V EFV           K   I W V++R+  + A        
Sbjct: 83  PNIVKLYGLM--HNPPRMVMEFVPCGDLYHRLLDKAHPIKWSVKLRLMLDIALGIEYMQN 140

Query: 202 --------DIKSINILLD-----DNYTTKVCDFGASKLVPIDETQLSTMVQGTLGY 244
                   D++S NI L           KV DFG S+          + + G   +
Sbjct: 141 QNPPIVHRDLRSPNIFLQSLDENAPVCAKVADFGLSQ----QSVHSVSGLLGNFQW 192

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} PDB: 3kmw_A* 3rep_A* Length = 271

 Score = 93.1 bits (232), Expect = 9e-23
 Identities = 20/168 (11%), Positives = 48/168 (28%), Gaps = 38/168 (22%)

Query: 108 YDRMIGRGGYGTVFLGSLSDNKAIAIK--KSRIVYQSQIEQCINKVVVLSQINHRNVVGL 165
           +   +     G ++ G       I +K  K R     +      +   L   +H NV+ +
Sbjct: 14  FLTKLNENHSGELWKGRW-QGNDIVVKVLKVRDWSTRKSRDFNEECPRLRIFSHPNVLPV 72

Query: 166 LGCCLETEVPLL--VNEFV------------KLPTISWEVRIRIAAETAE---------- 201
           LG C     P    +  ++                +     ++ A + A           
Sbjct: 73  LGACQSPPAPHPTLITHWMPYGSLYNVLHEGTNFVVDQSQAVKFALDMARGMAFLHTLEP 132

Query: 202 -----DIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTLGY 244
                 + S ++++D++ T ++             +  S        +
Sbjct: 133 LIPRHALNSRSVMIDEDMTARISMADVKF------SFQSPGRMYAPAW 174

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} Length = 271

 Score = 91.6 bits (228), Expect = 3e-22
 Identities = 38/172 (22%), Positives = 62/172 (36%), Gaps = 41/172 (23%)

Query: 110 RMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINK----VVVLSQINHRNVVGL 165
            +IG GG+G V+         +A+K +R      I Q I        + + + H N++ L
Sbjct: 13  EIIGIGGFGKVYRAFW-IGDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHPNIIAL 71

Query: 166 LGCCLETEVPLLVNEFVKL---------PTISWEVRIRIAAETAE--------------- 201
            G CL+     LV EF +            I  ++ +  A + A                
Sbjct: 72  RGVCLKEPNLCLVMEFARGGPLNRVLSGKRIPPDILVNWAVQIARGMNYLHDEAIVPIIH 131

Query: 202 -DIKSINILLD--------DNYTTKVCDFGASKLVPIDETQLSTMVQGTLGY 244
            D+KS NIL+          N   K+ DFG ++      T   +   G   +
Sbjct: 132 RDLKSSNILILQKVENGDLSNKILKITDFGLARE--WHRTTKMSAA-GAYAW 180

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} PDB: 3c4c_A* 3c4d_A* 3idp_A* 3ii5_A* 3d4q_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 2fb8_A* 4dbn_A* 1uwj_A* 1uwh_A* 3q96_A* Length = 289

 Score = 92.0 bits (229), Expect = 3e-22
 Identities = 38/164 (23%), Positives = 62/164 (37%), Gaps = 29/164 (17%)

Query: 110 RMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCC 169
           + IG G +GTV+ G    + A+ +         Q++   N+V VL +  H N++  +G  
Sbjct: 30  QRIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYS 89

Query: 170 LETEVPL-LVNEF-----------VKLPTISWEVRIRIAAETAE-------------DIK 204
             T   L +V ++                   +  I IA +TA              D+K
Sbjct: 90  --TAPQLAIVTQWCEGSSLYHHLHASETKFEMKKLIDIARQTARGMDYLHAKSIIHRDLK 147

Query: 205 SINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTLGYYLHT 248
           S NI L ++ T K+ DFG +          S   +   G  L  
Sbjct: 148 SNNIFLHEDNTVKIGDFGLATE--KSRWSGSHQFEQLSGSILWM 189

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens} Length = 310

 Score = 91.6 bits (228), Expect = 5e-22
 Identities = 27/156 (17%), Positives = 59/156 (37%), Gaps = 25/156 (16%)

Query: 110 RMIGRGGYGTVFLGSL-SDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGC 168
            ++G+G +G     +     + + +K+     +      + +V V+  + H NV+  +G 
Sbjct: 16  EVLGKGCFGQAIKVTHRETGEVMVMKELIRFDEETQRTFLKEVKVMRCLEHPNVLKFIGV 75

Query: 169 CLETEVPLLVNEFV-----------KLPTISWEVRIRIAAETAE-------------DIK 204
             + +    + E++                 W  R+  A + A              D+ 
Sbjct: 76  LYKDKRLNFITEYIKGGTLRGIIKSMDSQYPWSQRVSFAKDIASGMAYLHSMNIIHRDLN 135

Query: 205 SINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQG 240
           S N L+ +N    V DFG ++L+  ++TQ   +   
Sbjct: 136 SHNCLVRENKNVVVADFGLARLMVDEKTQPEGLRSL 171

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens} Length = 319

 Score = 87.4 bits (217), Expect = 2e-20
 Identities = 31/165 (18%), Positives = 58/165 (35%), Gaps = 33/165 (20%)

Query: 110 RMIGRGGYGTVFLGSLSDNKAIAIKKSRIVY--QSQIEQCINKVVVLSQINHRNVVGLLG 167
            +IG+G +G V+ G    +  +AI+   I    + Q++    +V+   Q  H NVV  +G
Sbjct: 39  ELIGKGRFGQVYHGRW--HGEVAIRLIDIERDNEDQLKAFKREVMAYRQTRHENVVLFMG 96

Query: 168 CCLETEVPLLVNEF-----------VKLPTISWEVRIRIAAETAE-------------DI 203
            C+      ++                   +      +IA E  +             D+
Sbjct: 97  ACMSPPHLAIITSLCKGRTLYSVVRDAKIVLDVNKTRQIAQEIVKGMGYLHAKGILHKDL 156

Query: 204 KSINILLDDNYTTKVCDFGASKLVPI----DETQLSTMVQGTLGY 244
           KS N+  D+     + DFG   +  +           +  G L +
Sbjct: 157 KSKNVFYDNG-KVVITDFGLFSISGVLQAGRREDKLRIQNGWLCH 200

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A* Length = 301

 Score = 85.1 bits (211), Expect = 1e-19
 Identities = 34/175 (19%), Positives = 63/175 (36%), Gaps = 45/175 (25%)

Query: 110 RMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINK---VVVLSQINHRNVVGLL 166
             +G+G YG V+ GS    + +A+K    ++ S+ E+   +   +     + H N++G +
Sbjct: 14  ECVGKGRYGEVWRGSW-QGENVAVK----IFSSRDEKSWFRETELYNTVMLRHENILGFI 68

Query: 167 GCCLETEVP----LLVNEFV---------KLPTISWEVRIRIAAETAE------------ 201
              + +        L+  +          +L T+     +RI    A             
Sbjct: 69  ASDMTSRHSSTQLWLITHYHEMGSLYDYLQLTTLDTVSCLRIVLSIASGLAHLHIEIFGT 128

Query: 202 ---------DIKSINILLDDNYTTKVCDFGASKLVPIDETQL---STMVQGTLGY 244
                    D+KS NIL+  N    + D G + +      QL   +    GT  Y
Sbjct: 129 QGKPAIAHRDLKSKNILVKKNGQCCIADLGLAVMHSQSTNQLDVGNNPRVGTKRY 183

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} Length = 337

 Score = 85.2 bits (211), Expect = 2e-19
 Identities = 32/176 (18%), Positives = 62/176 (35%), Gaps = 43/176 (24%)

Query: 108 YDRMIGRGGYGTVFLGSLSDNKAIAIKK-SRIVYQSQI-EQCINKVVVLSQINHRNVVGL 165
             + IG+G YG V++G     + +A+K        S   E    ++     + H N++G 
Sbjct: 41  MVKQIGKGRYGEVWMGKW-RGEKVAVKVFFTTEEASWFRET---EIYQTVLMRHENILGF 96

Query: 166 LGCCLETEVP----LLVNEFV---------KLPTISWEVRIRIAAETAE----------- 201
           +   ++         L+ ++          K  T+  +  +++A  +             
Sbjct: 97  IAADIKGTGSWTQLYLITDYHENGSLYDYLKSTTLDAKSMLKLAYSSVSGLCHLHTEIFS 156

Query: 202 ----------DIKSINILLDDNYTTKVCDFGASKLVPIDETQL---STMVQGTLGY 244
                     D+KS NIL+  N T  + D G +     D  ++        GT  Y
Sbjct: 157 TQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVKFISDTNEVDIPPNTRVGTKRY 212

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A* Length = 342

 Score = 82.9 bits (205), Expect = 1e-18
 Identities = 35/176 (19%), Positives = 59/176 (33%), Gaps = 43/176 (24%)

Query: 108 YDRMIGRGGYGTVFLGSLSDNKAIAIKK--SRIVYQSQIEQCINKVVVLSQINHRNVVGL 165
               IG+G +G V+ G     + +A+K   SR       E    ++     + H N++G 
Sbjct: 46  LQESIGKGRFGEVWRGKW-RGEEVAVKIFSSREERSWFREA---EIYQTVMLRHENILGF 101

Query: 166 LGCCLETEVP----LLVNEFV---------KLPTISWEVRIRIAAETAE----------- 201
           +    +         LV+++             T++ E  I++A  TA            
Sbjct: 102 IAADNKDNGTWTQLWLVSDYHEHGSLFDYLNRYTVTVEGMIKLALSTASGLAHLHMEIVG 161

Query: 202 ----------DIKSINILLDDNYTTKVCDFGASKL---VPIDETQLSTMVQGTLGY 244
                     D+KS NIL+  N T  + D G +                  GT  Y
Sbjct: 162 TQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSATDTIDIAPNHRVGTKRY 217

>4apc_A Serine/threonine-protein kinase NEK1; transferase; 2.10A {Homo sapiens} Length = 350

 Score = 80.1 bits (198), Expect = 1e-17
 Identities = 38/171 (22%), Positives = 62/171 (36%), Gaps = 30/171 (17%)

Query: 104 NNYAYDRMIGRGGYGTVFLG-SLSDNKAIAIKKSRIVYQS--QIEQCINKVVVLSQINHR 160
             Y   + IG G +G   L  S  D +   IK+  I   S  + E+   +V VL+ + H 
Sbjct: 24  EKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMKHP 83

Query: 161 NVVGLLGCCLETEVPLLVNEFV------------KLPTISWEVRIRIAAETAE------- 201
           N+V       E     +V ++             K      +  +    +          
Sbjct: 84  NIVQYRESFEENGSLYIVMDYCEGGDLFKRINAQKGVLFQEDQILDWFVQICLALKHVHD 143

Query: 202 ------DIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTLGYYL 246
                 DIKS NI L  + T ++ DFG ++++          + GT  YYL
Sbjct: 144 RKILHRDIKSQNIFLTKDGTVQLGDFGIARVLNSTVELARACI-GTP-YYL 192

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A* Length = 310

 Score = 77.7 bits (192), Expect = 5e-17
 Identities = 37/174 (21%), Positives = 62/174 (35%), Gaps = 33/174 (18%)

Query: 104 NNYAYDRMIGRGGYGTVFLG-SLSDNKAIAIKKSRIVYQS---QIEQCINKVVVLSQINH 159
            N+  ++ IGRG +  V+    L D   +A+KK +I           CI ++ +L Q+NH
Sbjct: 32  ANFRIEKKIGRGQFSEVYRAACLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNH 91

Query: 160 RNVVGLLGCCLETEVPLLVNEFV--------------KLPTISWEVRIRIAAETAE---- 201
            NV+      +E     +V E                +   I      +   +       
Sbjct: 92  PNVIKYYASFIEDNELNIVLELADAGDLSRMIKHFKKQKRLIPERTVWKYFVQLCSALEH 151

Query: 202 ---------DIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTLGYYL 246
                    DIK  N+ +      K+ D G  +      T   ++V GT  YY+
Sbjct: 152 MHSRRVMHRDIKPANVFITATGVVKLGDLGLGRFFSSKTTAAHSLV-GTP-YYM 203

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens} Length = 317

 Score = 77.8 bits (192), Expect = 5e-17
 Identities = 36/198 (18%), Positives = 60/198 (30%), Gaps = 34/198 (17%)

Query: 85  SGSSDTAKIFTAGELKIATNNYAYDRMIGRGGYGTVFLG-SLSDNKAIAIKKSRIVYQSQ 143
             S      F    + I   +Y + + +G GG+  V L   L D    A+K+     Q  
Sbjct: 10  HSSGRENLYFQGHMVIIDNKHYLFIQKLGEGGFSYVDLVEGLHDGHFYALKRILCHEQQD 69

Query: 144 IEQCINKVVVLSQINHRNVVGLLGCCLETEVP----LLVNEF--------------VKLP 185
            E+   +  +    NH N++ L+  CL          L+  F               K  
Sbjct: 70  REEAQREADMHRLFNHPNILRLVAYCLRERGAKHEAWLLLPFFKRGTLWNEIERLKDKGN 129

Query: 186 TISWEVRI-RIAAETAE-------------DIKSINILLDDNYTTKVCDFGASKLVPIDE 231
            ++ E +I  +                   D+K  NILL D     + D G+     I  
Sbjct: 130 FLT-EDQILWLLLGICRGLEAIHAKGYAHRDLKPTNILLGDEGQPVLMDLGSMNQACIHV 188

Query: 232 TQLSTMVQGTLGYYLHTS 249
                 +          +
Sbjct: 189 EGSRQALTLQDWAAQRCT 206

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens} Length = 311

 Score = 75.0 bits (185), Expect = 4e-16
 Identities = 33/173 (19%), Positives = 56/173 (32%), Gaps = 38/173 (21%)

Query: 105 NYAYDRMIGRGGYGTVFLG-SLSDNKAIAIKKSRIVYQSQ--IEQCINKVVVLSQI-NHR 160
           ++     +G G YG VF   S  D +  A+K+S   ++      + + +V    ++  H 
Sbjct: 58  SFQRLSRLGHGSYGEVFKVRSKEDGRLYAVKRSMSPFRGPKDRARKLAEVGSHEKVGQHP 117

Query: 161 NVVGLLGCCLETEVPLLVNEFV-------------KLPTISWEVRIR-IAAETAE----- 201
             V L     E  +  L  E                LP    E ++     +T       
Sbjct: 118 CCVRLEQAWEEGGILYLQTELCGPSLQQHCEAWGASLP----EAQVWGYLRDTLLALAHL 173

Query: 202 --------DIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTLGYYL 246
                   D+K  NI L      K+ DFG      +       + +G    Y+
Sbjct: 174 HSQGLVHLDVKPANIFLGPRGRCKLGDFGLLVE--LGTAGAGEVQEGD-PRYM 223

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A* Length = 299

 Score = 72.8 bits (179), Expect = 2e-15
 Identities = 37/189 (19%), Positives = 64/189 (33%), Gaps = 40/189 (21%)

Query: 104 NNYAYDRMIGRGGYGTVFLG-SLSDNKAIAIKKSRIVYQS-QIEQCINKVVVLSQINHRN 161
            ++   + +GRGG+G VF   +  D+   AIK+ R+  +    E+ + +V  L+++ H  
Sbjct: 5   TDFEPIQCLGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPG 64

Query: 162 VVGLLGCCLETEVPL-------------------------LVNEFVKLPTISWEVRIRIA 196
           +V      LE                               +N    +      V + I 
Sbjct: 65  IVRYFNAWLEKNTTEKLQPSSPKVYLYIQMQLCRKENLKDWMNGRCTIEERERSVCLHIF 124

Query: 197 AETAE-------------DIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTLG 243
            + AE             D+K  NI    +   KV DFG    +  DE + + +      
Sbjct: 125 LQIAEAVEFLHSKGLMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVLTPMPAY 184

Query: 244 YYLHTSQGT 252
                  GT
Sbjct: 185 ARHTGQVGT 193

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B* Length = 284

 Score = 71.6 bits (176), Expect = 6e-15
 Identities = 34/185 (18%), Positives = 63/185 (34%), Gaps = 49/185 (26%)

Query: 104 NNYAYDRMIGRGGYGTVFLG-SLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNV 162
            ++    +IG GG+G VF      D K   IK+ +       E+   +V  L++++H N+
Sbjct: 11  MDFKEIELIGSGGFGQVFKAKHRIDGKTYVIKRVKY----NNEKAEREVKALAKLDHVNI 66

Query: 163 VGLLGCCLETEVPLLVNEFVKLPTISWEVRI----------------------------R 194
           V   GC    +     +      + +  + I                             
Sbjct: 67  VHYNGCWDGFDYDPETSSKNSSRSKTKCLFIQMEFCDKGTLEQWIEKRRGEKLDKVLALE 126

Query: 195 IAAETAE-------------DIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGT 241
           +  +  +             D+K  NI L D    K+ DFG    +  ++ + +    GT
Sbjct: 127 LFEQITKGVDYIHSKKLINRDLKPSNIFLVDTKQVKIGDFGLVTSLK-NDGKRTRSK-GT 184

Query: 242 LGYYL 246
           L  Y+
Sbjct: 185 L-RYM 188

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A* Length = 279

 Score = 71.1 bits (175), Expect = 9e-15
 Identities = 36/180 (20%), Positives = 66/180 (36%), Gaps = 39/180 (21%)

Query: 104 NNYAYDRMIGRGGYGTVFLG-SLSDNKAIAIKKSRIVYQSQ--IEQCINKVVVLSQINHR 160
            +Y     IG G YG        SD K +  K+      ++   +  +++V +L ++ H 
Sbjct: 6   EDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHP 65

Query: 161 NVVGLLGCCLETEVPLL--VNEFV--------------KLPTISWEVRIRIAAETAE--- 201
           N+V      ++     L  V E+               +   +  E  +R+  +      
Sbjct: 66  NIVRYYDRIIDRTNTTLYIVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALK 125

Query: 202 ---------------DIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTLGYYL 246
                          D+K  N+ LD     K+ DFG ++++  D +   T V GT  YY+
Sbjct: 126 ECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLARILNHDTSFAKTFV-GTP-YYM 183

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A* Length = 336

 Score = 71.7 bits (176), Expect = 1e-14
 Identities = 38/196 (19%), Positives = 65/196 (33%), Gaps = 43/196 (21%)

Query: 80  QLSKRSGSSDTAKIF-TAGELKIATNNYAYDRMIGRGGYGTVFLG-SLSDNKAIAIKKSR 137
           +     G   T K+     E +   +   +   +GRG +G V            A+KK R
Sbjct: 33  ETEDNEGVLLTEKLKPVDYEYREEVHWMTHQPRVGRGSFGEVHRMKDKQTGFQCAVKKVR 92

Query: 138 IVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLETE-------------VPLLVNEFVKL 184
           +      E     +V  + ++   +V L G   E               +  L+ +   L
Sbjct: 93  LEVFRVEE-----LVACAGLSSPRIVPLYGAVREGPWVNIFMELLEGGSLGQLIKQMGCL 147

Query: 185 PTISWEVRIR-IAAETAE-------------DIKSINILLDDN-YTTKVCDFGASKLVPI 229
           P    E R      +  E             D+K+ N+LL  +     +CDFG +  +  
Sbjct: 148 P----EDRALYYLGQALEGLEYLHTRRILHGDVKADNVLLSSDGSRAALCDFGHALCLQP 203

Query: 230 DETQLSTM----VQGT 241
           D    S +    + GT
Sbjct: 204 DGLGKSLLTGDYIPGT 219

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens} Length = 295

 Score = 70.8 bits (174), Expect = 1e-14
 Identities = 38/161 (23%), Positives = 62/161 (38%), Gaps = 31/161 (19%)

Query: 110 RMIGRGGYGTVFLG-SLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGC 168
            ++G+G YG V+ G  LS+   IAIK+         +    ++ +   + H+N+V  LG 
Sbjct: 28  VVLGKGTYGIVYAGRDLSNQVRIAIKEIPERDSRYSQPLHEEIALHKHLKHKNIVQYLGS 87

Query: 169 CLETE--------VP------LLVNEFVKLPTISWEVRIRIAAETAE------------- 201
             E          VP      LL +++  L      +      +  E             
Sbjct: 88  FSENGFIKIFMEQVPGGSLSALLRSKWGPLKDNEQTIGF-YTKQILEGLKYLHDNQIVHR 146

Query: 202 DIKSINILLD-DNYTTKVCDFGASKLVPIDETQLSTMVQGT 241
           DIK  N+L++  +   K+ DFG SK +        T   GT
Sbjct: 147 DIKGDNVLINTYSGVLKISDFGTSKRLAGINPCTETFT-GT 186

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A* Length = 297

 Score = 70.4 bits (173), Expect = 2e-14
 Identities = 44/159 (27%), Positives = 75/159 (47%), Gaps = 26/159 (16%)

Query: 108 YDRM--IGRGGYGTVFLG-SLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVG 164
           Y R   IG+G  GTV+    ++  + +AI++  +  Q + E  IN+++V+ +  + N+V 
Sbjct: 22  YTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVN 81

Query: 165 LLGCCLETEVPLLVNEF--------VKLPTISWEVRI-RIAAETAE-------------D 202
            L   L  +   +V E+        V   T   E +I  +  E  +             D
Sbjct: 82  YLDSYLVGDELWVVMEYLAGGSLTDVVTETCMDEGQIAAVCRECLQALEFLHSNQVIHRD 141

Query: 203 IKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGT 241
           IKS NILL  + + K+ DFG    +  ++++ STMV GT
Sbjct: 142 IKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMV-GT 179

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A* Length = 321

 Score = 70.1 bits (172), Expect = 3e-14
 Identities = 39/159 (24%), Positives = 61/159 (38%), Gaps = 26/159 (16%)

Query: 108 YDRM--IGRGGYGTVFLG-SLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVG 164
            D    IG G  G V L       + +A+K   +  Q + E   N+VV++    H NVV 
Sbjct: 47  LDSYVKIGEGSTGIVCLAREKHSGRQVAVKMMDLRKQQRRELLFNEVVIMRDYQHFNVVE 106

Query: 165 LLGCCLETEVPLLVNEF--------VKLPTISWEVRI-RIAAETAE-------------D 202
           +    L  E   ++ EF        +       E +I  +     +             D
Sbjct: 107 MYKSYLVGEELWVLMEFLQGGALTDIVSQVRLNEEQIATVCEAVLQALAYLHAQGVIHRD 166

Query: 203 IKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGT 241
           IKS +ILL  +   K+ DFG    +  D  +  ++V GT
Sbjct: 167 IKSDSILLTLDGRVKLSDFGFCAQISKDVPKRKSLV-GT 204

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus} Length = 323

 Score = 70.1 bits (172), Expect = 4e-14
 Identities = 33/159 (20%), Positives = 64/159 (40%), Gaps = 41/159 (25%)

Query: 110 RMIGRGGYGTVFLGSLSDNK----AIAIK--KSRIVYQSQIEQCINKVVVLSQINHRNVV 163
           RM+G+G +G+V    L         +A+K  K+ I+  S IE+ + +   + + +H +V 
Sbjct: 29  RMLGKGEFGSVREAQLKQEDGSFVKVAVKMLKADIIASSDIEEFLREAACMKEFDHPHVA 88

Query: 164 GLLGCCLETE------VPLLVNEFVKL----------------PTISWEVRIRIAAETA- 200
            L+G  L +       +P+++  F+K                   +  +  +R   + A 
Sbjct: 89  KLVGVSLRSRAKGRLPIPMVILPFMKHGDLHAFLLASRIGENPFNLPLQTLVRFMVDIAC 148

Query: 201 -----EDIKSI-------NILLDDNYTTKVCDFGASKLV 227
                     I       N +L ++ T  V DFG S+ +
Sbjct: 149 GMEYLSSRNFIHRDLAARNCMLAEDMTVCVADFGLSRKI 187

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A* Length = 313

 Score = 68.9 bits (169), Expect = 7e-14
 Identities = 36/194 (18%), Positives = 63/194 (32%), Gaps = 32/194 (16%)

Query: 80  QLSKRSGSSDTAKIFTAGELKIATNNYAYDRMIGRGGYGTVFLGSLSDNKAIAIK---KS 136
                SG     +      + +    Y+  + IG GG   VF       +  AIK     
Sbjct: 4   HHHHSSGVDLGTENLYFQSMSVKGRIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLE 63

Query: 137 RIVYQSQIEQCINKVVVLSQINHRN--VVGLLGCCLETEVPLLVNEF---------VKLP 185
                  ++   N++  L+++   +  ++ L    +  +   +V E           K  
Sbjct: 64  EAD-NQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMVMECGNIDLNSWLKKKK 122

Query: 186 TISWEVRIRIAAETAE-------------DIKSINILLDDNYTTKVCDFGASKLVPIDET 232
           +I    R        E             D+K  N L+ D    K+ DFG +  +  D T
Sbjct: 123 SIDPWERKSYWKNMLEAVHTIHQHGIVHSDLKPANFLIVDG-MLKLIDFGIANQMQPDTT 181

Query: 233 --QLSTMVQGTLGY 244
                + V GT+ Y
Sbjct: 182 SVVKDSQV-GTVNY 194

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7 Length = 373

 Score = 69.4 bits (170), Expect = 7e-14
 Identities = 42/198 (21%), Positives = 84/198 (42%), Gaps = 34/198 (17%)

Query: 60  RKNGTQRKFFQQNGGYLLQLQLSKRSGSSDTAKIFTAGELKIATNNYAYDRMIGRGGYGT 119
           +K G++  +FQ      + L     + + +  +      +  ++    ++ +IGRG +G 
Sbjct: 49  KKAGSENLYFQGANTVHIDLS----ALNPELVQAVQHVVIGPSSLIVHFNEVIGRGHFGC 104

Query: 120 VFLGSLSDNK----AIAIKKSRIVY-QSQIEQCINKVVVLSQINHRNVVGLLGCCLETEV 174
           V+ G+L DN       A+K    +    ++ Q + + +++   +H NV+ LLG CL +E 
Sbjct: 105 VYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEG 164

Query: 175 PLL-VNEFVKL-----------PTISWEVRIRIAAETA------EDIKSI-------NIL 209
             L V  ++K               + +  I    + A         K +       N +
Sbjct: 165 SPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKFLASKKFVHRDLAARNCM 224

Query: 210 LDDNYTTKVCDFGASKLV 227
           LD+ +T KV DFG ++ +
Sbjct: 225 LDEKFTVKVADFGLARDM 242

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A* Length = 313

 Score = 68.8 bits (169), Expect = 8e-14
 Identities = 35/158 (22%), Positives = 65/158 (41%), Gaps = 40/158 (25%)

Query: 110 RMIGRGGYGTVFLGSLSDNK----AIAIK--KSRIVYQSQIEQCINKVVVLSQINHRNVV 163
           +++G G +G+V  G+L         +A+K  K     Q +IE+ +++   +   +H NV+
Sbjct: 40  KILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSSQREIEEFLSEAACMKDFSHPNVI 99

Query: 164 GLLGCCLETE-----VPLLVNEFVK----------------LPTISWEVRIRIAAETA-- 200
            LLG C+E        P+++  F+K                   I  +  ++   + A  
Sbjct: 100 RLLGVCIEMSSQGIPKPMVILPFMKYGDLHTYLLYSRLETGPKHIPLQTLLKFMVDIALG 159

Query: 201 ----EDIKSI-------NILLDDNYTTKVCDFGASKLV 227
                +   +       N +L D+ T  V DFG SK +
Sbjct: 160 MEYLSNRNFLHRDLAARNCMLRDDMTVCVADFGLSKKI 197

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 3q6w_A* 3r7o_A* 3q6u_A* 3cth_A* 3ce3_A* 3ctj_A* ... Length = 298

 Score = 68.4 bits (168), Expect = 9e-14
 Identities = 37/149 (24%), Positives = 66/149 (44%), Gaps = 30/149 (20%)

Query: 109 DRMIGRGGYGTVFLGSLSDNK----AIAIKKSRIVY-QSQIEQCINKVVVLSQINHRNVV 163
           + +IGRG +G V+ G+L DN       A+K    +    ++ Q + + +++   +H NV+
Sbjct: 30  NEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVL 89

Query: 164 GLLGCCLETEVPLL-VNEFVKL-----------PTISWEVRIRIAAETA------EDIKS 205
            LLG CL +E   L V  ++K               + +  I    + A         K 
Sbjct: 90  SLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKYLASKKF 149

Query: 206 I-------NILLDDNYTTKVCDFGASKLV 227
           +       N +LD+ +T KV DFG ++ +
Sbjct: 150 VHRDLAARNCMLDEKFTVKVADFGLARDM 178

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B Length = 543

 Score = 69.4 bits (170), Expect = 1e-13
 Identities = 38/178 (21%), Positives = 70/178 (39%), Gaps = 36/178 (20%)

Query: 100 KIATNNYAYDRMIGRGGYGTVFLGSLSDNKAI-AIK---KSRIVYQSQIEQCINKVVVLS 155
            +  + +   R++GRGG+G VF   +     + A K   K R+  +   +  + +  +L+
Sbjct: 181 PMGEDWFLDFRVLGRGGFGEVFACQMKATGKLYACKKLNKKRLKKRKGYQGAMVEKKILA 240

Query: 156 QINHRNVVGLLGCCLETEVPL-LVNEFV--------------KLPTISWEVRIRI-AAET 199
           +++ R +V L     ET+  L LV   +                P    E R     A+ 
Sbjct: 241 KVHSRFIVSLA-YAFETKTDLCLVMTIMNGGDIRYHIYNVDEDNPGFQ-EPRAIFYTAQI 298

Query: 200 A-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTLGY 244
                          D+K  N+LLDD+   ++ D G +  +   +T+      GT G+
Sbjct: 299 VSGLEHLHQRNIIYRDLKPENVLLDDDGNVRISDLGLAVELKAGQTKTKGYA-GTPGF 355

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A* Length = 302

 Score = 68.1 bits (167), Expect = 1e-13
 Identities = 30/156 (19%), Positives = 63/156 (40%), Gaps = 28/156 (17%)

Query: 112 IGRGGYGTVFLG-SLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCL 170
           +G G +G V+   +       A K      + ++E  I ++ +L+  +H  +V LLG   
Sbjct: 27  LGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYIVEIEILATCDHPYIVKLLGAYY 86

Query: 171 ETEVPLLVNEF----------VKLPTISWEVRIR-IAAETAE-------------DIKSI 206
                 ++ EF          ++L     E +I+ +  +  E             D+K+ 
Sbjct: 87  HDGKLWIMIEFCPGGAVDAIMLELDRGLTEPQIQVVCRQMLEALNFLHSKRIIHRDLKAG 146

Query: 207 NILLDDNYTTKVCDFG-ASKLVPIDETQLSTMVQGT 241
           N+L+      ++ DFG ++K +     +  + + GT
Sbjct: 147 NVLMTLEGDIRLADFGVSAKNLKT-LQKRDSFI-GT 180

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A Length = 283

 Score = 67.6 bits (166), Expect = 2e-13
 Identities = 31/146 (21%), Positives = 58/146 (39%), Gaps = 25/146 (17%)

Query: 110 RMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCC 169
           + +G G +G V  G       +AIK  +    S+ ++ I +  V+  ++H  +V L G C
Sbjct: 30  KELGTGQFGVVKYGKWRGQYDVAIKMIKEGSMSE-DEFIEEAKVMMNLSHEKLVQLYGVC 88

Query: 170 LETEVPLLVNEFVKL-----------PTISWEVRIRIAAETAE-------------DIKS 205
            +     ++ E++                  +  + +  +  E             D+ +
Sbjct: 89  TKQRPIFIITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLESKQFLHRDLAA 148

Query: 206 INILLDDNYTTKVCDFGASKLVPIDE 231
            N L++D    KV DFG S+ V  DE
Sbjct: 149 RNCLVNDQGVVKVSDFGLSRYVLDDE 174

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} PDB: 3sxr_A* Length = 268

 Score = 67.2 bits (165), Expect = 2e-13
 Identities = 27/146 (18%), Positives = 57/146 (39%), Gaps = 25/146 (17%)

Query: 110 RMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCC 169
           + +G G +G V LG       +A+K  +    S+ ++   +   + +++H  +V   G C
Sbjct: 14  KELGSGQFGVVKLGKWKGQYDVAVKMIKEGSMSE-DEFFQEAQTMMKLSHPKLVKFYGVC 72

Query: 170 LETEVPLLVNEFVKL-----------PTISWEVRIRIAAETAE-------------DIKS 205
            +     +V E++               +     + +  +  E             D+ +
Sbjct: 73  SKEYPIYIVTEYISNGCLLNYLRSHGKGLEPSQLLEMCYDVCEGMAFLESHQFIHRDLAA 132

Query: 206 INILLDDNYTTKVCDFGASKLVPIDE 231
            N L+D +   KV DFG ++ V  D+
Sbjct: 133 RNCLVDRDLCVKVSDFGMTRYVLDDQ 158

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens} Length = 314

 Score = 67.8 bits (166), Expect = 2e-13
 Identities = 34/155 (21%), Positives = 64/155 (41%), Gaps = 28/155 (18%)

Query: 112 IGRGGYGTVFLGS-LSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCL 170
           +G G YG+V+        + +AIK+  +  +S +++ I ++ ++ Q +  +VV   G   
Sbjct: 37  LGEGSYGSVYKAIHKETGQIVAIKQ--VPVESDLQEIIKEISIMQQCDSPHVVKYYGSYF 94

Query: 171 ETEVPLLVNEF----------VKLPTISWEVRIR-IAAETAE-------------DIKSI 206
           +     +V E+                  E  I  I   T +             DIK+ 
Sbjct: 95  KNTDLWIVMEYCGAGSVSDIIRLRNKTLTEDEIATILQSTLKGLEYLHFMRKIHRDIKAG 154

Query: 207 NILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGT 241
           NILL+     K+ DFG +  +     + +T++ GT
Sbjct: 155 NILLNTEGHAKLADFGVAGQLTDTMAKRNTVI-GT 188

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A* Length = 390

 Score = 67.9 bits (166), Expect = 2e-13
 Identities = 39/198 (19%), Positives = 64/198 (32%), Gaps = 34/198 (17%)

Query: 78  QLQLSKRSGSSDTAKIFTAGELKIATNNYAYDR--MIGRGGYGTVFLGSLSDNKAIAIK- 134
           Q   S   G+ D  K  ++    I+     Y     IG GG   VF       +  AIK 
Sbjct: 28  QHMDSPDLGTDDDDKASSSANECISVKGRIYSILKQIGSGGSSKVFQVLNEKKQIYAIKY 87

Query: 135 --KSRIVYQSQIEQCINKVVVLSQINH--RNVVGLLGCCLETEVPLLVNEF--------- 181
                      ++   N++  L+++      ++ L    +  +   +V E          
Sbjct: 88  VNLEEAD-NQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMVMECGNIDLNSWL 146

Query: 182 VKLPTISWEVRIRIAAETAE-------------DIKSINILLDDNYTTKVCDFGASKLVP 228
            K  +I    R        E             D+K  N L+ D    K+ DFG +  + 
Sbjct: 147 KKKKSIDPWERKSYWKNMLEAVHTIHQHGIVHSDLKPANFLIVDG-MLKLIDFGIANQMQ 205

Query: 229 IDET--QLSTMVQGTLGY 244
            D T     + V G + Y
Sbjct: 206 PDTTSVVKDSQV-GAVNY 222

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} Length = 298

 Score = 67.3 bits (165), Expect = 2e-13
 Identities = 38/149 (25%), Positives = 68/149 (45%), Gaps = 30/149 (20%)

Query: 109 DRMIGRGGYGTVFLGSLSD----NKAIAIKK-SRIVYQSQIEQCINKVVVLSQINHRNVV 163
           DR+IG+G +G V+ G   D        AIK  SRI    Q+E  + + +++  +NH NV+
Sbjct: 26  DRVIGKGHFGVVYHGEYIDQAQNRIQCAIKSLSRITEMQQVEAFLREGLLMRGLNHPNVL 85

Query: 164 GLLGCCLETE-VPLLVNEFVKL-----------PTISWEVRIRIAAETA------EDIKS 205
            L+G  L  E +P ++  ++                + +  I    + A       + K 
Sbjct: 86  ALIGIMLPPEGLPHVLLPYMCHGDLLQFIRSPQRNPTVKDLISFGLQVARGMEYLAEQKF 145

Query: 206 I-------NILLDDNYTTKVCDFGASKLV 227
           +       N +LD+++T KV DFG ++ +
Sbjct: 146 VHRDLAARNCMLDESFTVKVADFGLARDI 174

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A Length = 303

 Score = 67.4 bits (165), Expect = 3e-13
 Identities = 38/190 (20%), Positives = 76/190 (40%), Gaps = 41/190 (21%)

Query: 103 TNNYAYDRMIGRGGYGTVFLG-SLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRN 161
            +++    ++G+G +G V    +  D++  AIKK R   + ++   +++V++L+ +NH+ 
Sbjct: 5   ASDFEEIAVLGQGAFGQVVKARNALDSRYYAIKKIRHT-EEKLSTILSEVMLLASLNHQY 63

Query: 162 VVGLLGCCLETEVPLLVNEFVKLPTISW-----------------------EVRI-RIAA 197
           VV      LE    +     VK  +  +                            R+  
Sbjct: 64  VVRYYAAWLERRNFVKPMTAVKKKSTLFIQMEYCENGTLYDLIHSENLNQQRDEYWRLFR 123

Query: 198 ETAE-------------DIKSINILLDDNYTTKVCDFGASKLV--PIDETQLSTMVQGTL 242
           +  E             D+K +NI +D++   K+ DFG +K V   +D  +L +      
Sbjct: 124 QILEALSYIHSQGIIHRDLKPMNIFIDESRNVKIGDFGLAKNVHRSLDILKLDSQNLPGS 183

Query: 243 GYYLHTSQGT 252
              L ++ GT
Sbjct: 184 SDNLTSAIGT 193

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 3lau_A* 2wtv_A* ... Length = 279

 Score = 66.5 bits (163), Expect = 4e-13
 Identities = 38/176 (21%), Positives = 64/176 (36%), Gaps = 38/176 (21%)

Query: 100 KIATNNYAYDRMIGRGGYGTVFLG-SLSDNKAIAIK---KSRIVYQSQIEQCINKVVVLS 155
           + A  ++   R +G+G +G V+L         +A+K   K+++       Q   +V + S
Sbjct: 5   QWALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQS 64

Query: 156 QINHRNVVGLLGCCLETEVPL-LVNEFV-------------KLPTISWEVRIRIAAETAE 201
            + H N++ L G        + L+ E+              K              E A 
Sbjct: 65  HLRHPNILRLYG-YFHDATRVYLILEYAPLGTVYRELQKLSKFD--EQRTA-TYITELAN 120

Query: 202 -------------DIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTLGY 244
                        DIK  N+LL      K+ DFG S   P   ++ + +  GTL Y
Sbjct: 121 ALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAP--SSRRTDLC-GTLDY 173

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A* Length = 377

 Score = 66.5 bits (163), Expect = 7e-13
 Identities = 34/148 (22%), Positives = 62/148 (41%), Gaps = 26/148 (17%)

Query: 110 RMIGRGGYGTVFLGSL-SDNKAIAIKKSR-IVYQSQIEQCINKVVVLSQINHRNVVGLLG 167
             IGRG +G VF G L +DN  +A+K  R  +      + + +  +L Q +H N+V L+G
Sbjct: 120 EQIGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIG 179

Query: 168 CCLETEVPLLVNEFVKL-----------PTISWEVRIRIAAETAE-------------DI 203
            C + +   +V E V+              +  +  +++  + A              D+
Sbjct: 180 VCTQKQPIYIVMELVQGGDFLTFLRTEGARLRVKTLLQMVGDAAAGMEYLESKCCIHRDL 239

Query: 204 KSINILLDDNYTTKVCDFGASKLVPIDE 231
            + N L+ +    K+ DFG S+      
Sbjct: 240 AARNCLVTEKNVLKISDFGMSREEADGV 267

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A* Length = 267

 Score = 64.9 bits (159), Expect = 1e-12
 Identities = 39/146 (26%), Positives = 63/146 (43%), Gaps = 25/146 (17%)

Query: 110 RMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCC 169
           + IG G +G V LG   +   +AIK  R    S+ E  I +  V+ +++H  +V L G C
Sbjct: 14  QEIGSGQFGLVHLGYWLNKDKVAIKTIREGAMSE-EDFIEEAEVMMKLSHPKLVQLYGVC 72

Query: 170 LETEVPLLVNEFVKL-----------PTISWEVRIRIAAETAE-------------DIKS 205
           LE     LV EF++               + E  + +  +  E             D+ +
Sbjct: 73  LEQAPICLVTEFMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLEEACVIHRDLAA 132

Query: 206 INILLDDNYTTKVCDFGASKLVPIDE 231
            N L+ +N   KV DFG ++ V  D+
Sbjct: 133 RNCLVGENQVIKVSDFGMTRFVLDDQ 158

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 Length = 535

 Score = 66.1 bits (161), Expect = 1e-12
 Identities = 33/148 (22%), Positives = 66/148 (44%), Gaps = 29/148 (19%)

Query: 110 RMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCC 169
             +G+G +G V++G+ +    +AIK  +    S  E  + +  V+ ++ H  +V L    
Sbjct: 273 VKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSP-EAFLQEAQVMKKLRHEKLVQLYAVV 331

Query: 170 LETEVPL-LVNEFVKL------------PTISWEVRIRIAAETAE-------------DI 203
             +E P+ +V E++                +     + +AA+ A              D+
Sbjct: 332 --SEEPIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDL 389

Query: 204 KSINILLDDNYTTKVCDFGASKLVPIDE 231
           ++ NIL+ +N   KV DFG ++L+  +E
Sbjct: 390 RAANILVGENLVCKVADFGLARLIEDNE 417

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens} Length = 326

 Score = 65.5 bits (160), Expect = 1e-12
 Identities = 31/155 (20%), Positives = 63/155 (40%), Gaps = 31/155 (20%)

Query: 108 YDRMIGRGGYGTVFLG---SLSDNKAI--AIKKSRIVYQSQIEQCINKVVVLSQINHRNV 162
           + + +G+G +G+V +     L DN     A+KK +   +  +     ++ +L  + H N+
Sbjct: 45  FLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNI 104

Query: 163 VGLLGCCLET-EVPL-LVNEFVKL-----------PTISWEVRIRIAAETA------EDI 203
           V   G C       L L+ E++               I     ++  ++           
Sbjct: 105 VKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLGTK 164

Query: 204 KSI-------NILLDDNYTTKVCDFGASKLVPIDE 231
           + I       NIL+++    K+ DFG +K++P D+
Sbjct: 165 RYIHRDLATRNILVENENRVKIGDFGLTKVLPQDK 199

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ... Length = 279

 Score = 64.9 bits (159), Expect = 1e-12
 Identities = 30/148 (20%), Positives = 68/148 (45%), Gaps = 29/148 (19%)

Query: 110 RMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCC 169
             +G G +G V++G  + +  +A+K  +    S  +  + +  ++ Q+ H+ +V L    
Sbjct: 19  ERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSP-DAFLAEANLMKQLQHQRLVRLYAVV 77

Query: 170 LETEVPLL-VNEFVKL------------PTISWEVRIRIAAETAE-------------DI 203
             T+ P+  + E+++               ++    + +AA+ AE             D+
Sbjct: 78  --TQEPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNYIHRDL 135

Query: 204 KSINILLDDNYTTKVCDFGASKLVPIDE 231
           ++ NIL+ D  + K+ DFG ++L+  +E
Sbjct: 136 RAANILVSDTLSCKIADFGLARLIEDNE 163

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens} Length = 343

 Score = 65.5 bits (160), Expect = 1e-12
 Identities = 35/175 (20%), Positives = 57/175 (32%), Gaps = 34/175 (19%)

Query: 101 IATNNYAYDR--MIGRGGYGTVFLGSLSDNKAIAIK---KSRIVYQSQIEQCINKVVVLS 155
           I+     Y     IG GG   VF       +  AIK            ++   N++  L+
Sbjct: 4   ISVKGRIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEAD-NQTLDSYRNEIAYLN 62

Query: 156 QINH--RNVVGLLGCCLETEVPLLVNEF---------VKLPTISWEVRIRIAAETAE--- 201
           ++      ++ L    +  +   +V E           K  +I    R        E   
Sbjct: 63  KLQQHSDKIIRLYDYEITDQYIYMVMECGNIDLNSWLKKKKSIDPWERKSYWKNMLEAVH 122

Query: 202 ----------DIKSINILLDDNYTTKVCDFGASKLVPIDET--QLSTMVQGTLGY 244
                     D+K  N L+ D    K+ DFG +  +  D T     + V GT+ Y
Sbjct: 123 TIHQHGIVHSDLKPANFLIVDG-MLKLIDFGIANQMQPDTTSVVKDSQV-GTVNY 175

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A* Length = 348

 Score = 65.1 bits (159), Expect = 2e-12
 Identities = 36/160 (22%), Positives = 62/160 (38%), Gaps = 38/160 (23%)

Query: 112 IGRGGYGTVFLG-SLSDNKAIAIKKSRIVYQSQ---IEQCINKVVVLSQINHRNVVGLLG 167
           IG G +G V+    + +++ +AIKK     +      +  I +V  L ++ H N +   G
Sbjct: 62  IGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRG 121

Query: 168 CCLETEVPLLVNEF---------VKLPTISWEVRIR-IAAETAE-------------DIK 204
           C L      LV E+                 EV I  +     +             D+K
Sbjct: 122 CYLREHTAWLVMEYCLGSASDLLEVHKKPLQEVEIAAVTHGALQGLAYLHSHNMIHRDVK 181

Query: 205 SINILLDDNYTTKVCDFGASKLVPIDETQLS---TMVQGT 241
           + NILL +    K+ DFG++       + ++   + V GT
Sbjct: 182 AGNILLSEPGLVKLGDFGSA-------SIMAPANSFV-GT 213

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 3q32_A* 3rvg_A* 3tjc_A* 3tjd_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* 3io7_A* 3kck_A* 3jy9_A* Length = 295

 Score = 64.6 bits (158), Expect = 2e-12
 Identities = 31/155 (20%), Positives = 63/155 (40%), Gaps = 31/155 (20%)

Query: 108 YDRMIGRGGYGTVFLG---SLSDNKAI--AIKKSRIVYQSQIEQCINKVVVLSQINHRNV 162
           + + +G+G +G+V +     L DN     A+KK +   +  +     ++ +L  + H N+
Sbjct: 14  FLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNI 73

Query: 163 VGLLGCCLET-EVPL-LVNEFVKL-----------PTISWEVRIRIAAETA------EDI 203
           V   G C       L L+ E++               I     ++  ++           
Sbjct: 74  VKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLGTK 133

Query: 204 KSI-------NILLDDNYTTKVCDFGASKLVPIDE 231
           + I       NIL+++    K+ DFG +K++P D+
Sbjct: 134 RYIHRDLATRNILVENENRVKIGDFGLTKVLPQDK 168

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens} Length = 337

 Score = 64.8 bits (158), Expect = 2e-12
 Identities = 36/215 (16%), Positives = 67/215 (31%), Gaps = 45/215 (20%)

Query: 80  QLSKRSGSSDTAKIFTAGELKIATNNYAYDRMIGRGGYGTVFLG-SLSDNKAIAIKKSRI 138
            L   SG   +   F    +++        R++  GG+  V+    +   +  A+K+   
Sbjct: 6   SLGGASGRDQSD--FVGQTVELGELRLRVRRVLAEGGFAFVYEAQDVGSGREYALKRLLS 63

Query: 139 VYQSQIEQCINKVVVLSQI-NHRNVVGLLGCCL--------ETEVPLLVNEF-------- 181
             + +    I +V  + ++  H N+V                    LL+ E         
Sbjct: 64  NEEEKNRAIIQEVCFMKKLSGHPNIVQFCSAASIGKEESDTGQAEFLLLTELCKGQLVEF 123

Query: 182 -------VKLPTISWEVRIRIAAETAE---------------DIKSINILLDDNYTTKVC 219
                    L      V  +I  +T                 D+K  N+LL +  T K+C
Sbjct: 124 LKKMESRGPLSCD--TVL-KIFYQTCRAVQHMHRQKPPIIHRDLKVENLLLSNQGTIKLC 180

Query: 220 DFGASKLVPIDETQLSTMVQGTLGYYLHTSQGTLN 254
           DFG++  +        +  +  L     T   T  
Sbjct: 181 DFGSATTISHYPDYSWSAQRRALVEEEITRNTTPM 215

>3pvu_A Beta-adrenergic receptor kinase 1; transferase, serine/threonine-protein kinase, ATP-binding, I membrane; HET: QRW; 2.48A {Bos taurus} PDB: 3psc_A* 3pvw_A* 1omw_A 1ym7_A 2bcj_A* 3cik_A 3krw_A* 3krx_A* 1bak_A Length = 695

 Score = 65.7 bits (160), Expect = 2e-12
 Identities = 41/177 (23%), Positives = 72/177 (40%), Gaps = 37/177 (20%)

Query: 100 KIATNNYAYDRMIGRGGYGTVFLGSLSDNKAI-AIK---KSRIVYQSQIEQCINKVVVLS 155
            +  N+++  R+IGRGG+G V+    +D   + A+K   K RI  +      +N+ ++LS
Sbjct: 185 HLTMNDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLS 244

Query: 156 QIN---HRNVVGLLGCCLETEVPL-LVNEFV----------KLPTISWEVRIRI-AAETA 200
            ++      +V  +     T   L  + + +          +    S E  +R  AAE  
Sbjct: 245 LVSTGDCPFIVC-MSYAFHTPDKLSFILDLMNGGDLHYHLSQHGVFS-EADMRFYAAEII 302

Query: 201 -------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTLGY 244
                         D+K  NILLD++   ++ D G +      +      V GT GY
Sbjct: 303 LGLEHMHNRFVVYRDLKPANILLDEHGHVRISDLGLACDFSKKKPH--ASV-GTHGY 356

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 3pjc_A* 1yvj_A* Length = 327

 Score = 64.7 bits (158), Expect = 2e-12
 Identities = 30/155 (19%), Positives = 59/155 (38%), Gaps = 31/155 (20%)

Query: 108 YDRMIGRGGYGTVFLG---SLSDNKAI--AIKKSRIVYQSQIEQCINKVVVLSQINHRNV 162
           Y   +G+G +G+V L     L DN     A+K+ +     Q      ++ +L  ++   +
Sbjct: 27  YISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGPDQQRDFQREIQILKALHSDFI 86

Query: 163 VGLLGCCLET-EVPL-LVNEFVKL-----------PTISWEVRIRIAAETA------EDI 203
           V   G         L LV E++               +     +  +++           
Sbjct: 87  VKYRGVSYGPGRQSLRLVMEYLPSGCLRDFLQRHRARLDASRLLLYSSQICKGMEYLGSR 146

Query: 204 KSI-------NILLDDNYTTKVCDFGASKLVPIDE 231
           + +       NIL++     K+ DFG +KL+P+D+
Sbjct: 147 RCVHRDLAARNILVESEAHVKIADFGLAKLLPLDK 181

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A Length = 495

 Score = 65.2 bits (159), Expect = 2e-12
 Identities = 38/194 (19%), Positives = 72/194 (37%), Gaps = 30/194 (15%)

Query: 67  KFFQQNGGYL---LQLQLSKRSGSSDTAKIFTAGELKIATNNYAYDRMIGRGGYGTVFLG 123
                    L   L     KR+  +         + ++   +      +G G YG V+ G
Sbjct: 180 HHHSTVADGLITTLHYPAPKRNKPTIYGVSPNYDKWEMERTDITMKHKLGGGQYGEVYEG 239

Query: 124 SL-SDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEFV 182
                +  +A+K  +       E+ + +  V+ +I H N+V LLG C       ++ EF+
Sbjct: 240 VWKKYSLTVAVKTLKEDTMEV-EEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFM 298

Query: 183 KL------------PTISWEVRIRIAAETAE-------------DIKSINILLDDNYTTK 217
                           +S  V + +A + +              ++ + N L+ +N+  K
Sbjct: 299 TYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKNFIHRNLAARNCLVGENHLVK 358

Query: 218 VCDFGASKLVPIDE 231
           V DFG S+L+  D 
Sbjct: 359 VADFGLSRLMTGDT 372

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A* Length = 576

 Score = 65.2 bits (159), Expect = 2e-12
 Identities = 47/176 (26%), Positives = 71/176 (40%), Gaps = 35/176 (19%)

Query: 100 KIATNNYAYDRMIGRGGYGTVFLGSLSDNKAI-AIK---KSRIVYQSQIEQCINKVVVLS 155
            +  N +   R++G+GG+G V    +     + A K   K RI  +      +N+  +L 
Sbjct: 180 PVTKNTFRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILE 239

Query: 156 QINHRNVVGLLGCCLETEVPL-LVNEFV------------KLPTISWEVRIRI-AAETA- 200
           ++N R VV  L    ET+  L LV   +                   E R    AAE   
Sbjct: 240 KVNSRFVVS-LAYAYETKDALCLVLTLMNGGDLKFHIYHMGQAGFP-EARAVFYAAEICC 297

Query: 201 ------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTLGY 244
                        D+K  NILLDD+   ++ D G +  VP  +T +   V GT+GY
Sbjct: 298 GLEDLHRERIVYRDLKPENILLDDHGHIRISDLGLAVHVPEGQT-IKGRV-GTVGY 351

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A* Length = 335

 Score = 64.6 bits (158), Expect = 3e-12
 Identities = 38/181 (20%), Positives = 62/181 (34%), Gaps = 47/181 (25%)

Query: 105 NYAYDRMIGRGGYGTVFLG-SLSDNKAIAIK---KSRIVYQSQIEQCINKVVVLSQINHR 160
            Y   R +G+GG+   F        +  A K   KS ++   Q E+   ++ +   + H+
Sbjct: 42  RYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQ 101

Query: 161 NVVGLLGCCLETEVPL-LVNEFV-------------KLPTISWEVRIRIAAETAE----- 201
           +VVG  G   E    + +V E                L     E R     +        
Sbjct: 102 HVVGFHG-FFEDNDFVFVVLELCRRRSLLELHKRRKALTE--PEAR-YYLRQIVLGCQYL 157

Query: 202 --------DIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTLGYYLHTSQGTL 253
                   D+K  N+ L+++   K+ DFG           L+T V+   G       GT 
Sbjct: 158 HRNRVIHRDLKLGNLFLNEDLEVKIGDFG-----------LATKVE-YDGERKKVLCGTP 205

Query: 254 N 254
           N
Sbjct: 206 N 206

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ... Length = 452

 Score = 64.8 bits (158), Expect = 3e-12
 Identities = 33/148 (22%), Positives = 66/148 (44%), Gaps = 29/148 (19%)

Query: 110 RMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCC 169
             +G+G +G V++G+ +    +AIK  +    S  E  + +  V+ ++ H  +V L    
Sbjct: 190 VKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSP-EAFLQEAQVMKKLRHEKLVQLYAVV 248

Query: 170 LETEVPL-LVNEFVKL------------PTISWEVRIRIAAETAE-------------DI 203
             +E P+ +V E++                +     + +AA+ A              D+
Sbjct: 249 --SEEPIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDL 306

Query: 204 KSINILLDDNYTTKVCDFGASKLVPIDE 231
           ++ NIL+ +N   KV DFG ++L+  +E
Sbjct: 307 RAANILVGENLVCKVADFGLARLIEDNE 334

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ... Length = 288

 Score = 63.4 bits (155), Expect = 4e-12
 Identities = 35/148 (23%), Positives = 62/148 (41%), Gaps = 27/148 (18%)

Query: 110 RMIGRGGYGTVFLGSL-SDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGC 168
             +G G YG V+ G     +  +A+K  +       E+ + +  V+ +I H N+V LLG 
Sbjct: 19  HKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEV-EEFLKEAAVMKEIKHPNLVQLLGV 77

Query: 169 CLETEVPLLVNEFVKL------------PTISWEVRIRIAAETAE-------------DI 203
           C       ++ EF+                +S  V + +A + +              D+
Sbjct: 78  CTREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKNFIHRDL 137

Query: 204 KSINILLDDNYTTKVCDFGASKLVPIDE 231
            + N L+ +N+  KV DFG S+L+  D 
Sbjct: 138 AARNCLVGENHLVKVADFGLSRLMTGDT 165

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens} Length = 327

 Score = 63.4 bits (155), Expect = 7e-12
 Identities = 32/153 (20%), Positives = 65/153 (42%), Gaps = 31/153 (20%)

Query: 109 DRMIGRGGYGTVFLGSLSDNK-----AIAIKKSRIVY-QSQIEQCINKVVVLSQINHRNV 162
            +++G G +GTV+ G            +AIK+ R        ++ +++  V++ +++ +V
Sbjct: 20  IKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHV 79

Query: 163 VGLLGCCLETEVPLLVNEFVKL-----------PTISWEVRIRIAAETA------EDIKS 205
             LLG CL + V  L+ + +               I  +  +    + A      ED + 
Sbjct: 80  CRLLGICLTSTV-QLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRRL 138

Query: 206 I-------NILLDDNYTTKVCDFGASKLVPIDE 231
           +       N+L+      K+ DFG +KL+  +E
Sbjct: 139 VHRDLAARNVLVKTPQHVKITDFGLAKLLGAEE 171

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ... Length = 284

 Score = 63.0 bits (154), Expect = 7e-12
 Identities = 37/176 (21%), Positives = 65/176 (36%), Gaps = 38/176 (21%)

Query: 100 KIATNNYAYDRMIGRGGYGTVFLG-SLSDNKAIAIK---KSRIVYQSQIEQCINKVVVLS 155
           K   +++   R +G+G +G V+L     +   +A+K   KS++  +    Q   ++ + S
Sbjct: 10  KFTIDDFDIGRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQS 69

Query: 156 QINHRNVVGLLGCCLETEVPL-LVNEFV-------------KLPTISWEVRIRIAAETAE 201
            + H N++ +          + L+ EF              +              E A+
Sbjct: 70  HLRHPNILRMYN-YFHDRKRIYLMLEFAPRGELYKELQKHGRFD--EQRSA-TFMEELAD 125

Query: 202 -------------DIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTLGY 244
                        DIK  N+L+      K+ DFG S   P    +  TM  GTL Y
Sbjct: 126 ALHYCHERKVIHRDIKPENLLMGYKGELKIADFGWSVHAP--SLRRRTMC-GTLDY 178

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A* Length = 303

 Score = 62.7 bits (153), Expect = 8e-12
 Identities = 39/155 (25%), Positives = 67/155 (43%), Gaps = 27/155 (17%)

Query: 112 IGRGGYGTVFLG-SLSDNKAIAIKKSRI-VYQSQIEQCINKVVVLSQINHRNVVGLLGCC 169
           IG+G +G VF G      K +AIK   +   + +IE    ++ VLSQ +   V    G  
Sbjct: 30  IGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSY 89

Query: 170 LETEVPLLVNEF---------VKLPTISWEVRIR-IAAETAE-------------DIKSI 206
           L+     ++ E+         ++   +  E +I  I  E  +             DIK+ 
Sbjct: 90  LKDTKLWIIMEYLGGGSALDLLEPGPLD-ETQIATILREILKGLDYLHSEKKIHRDIKAA 148

Query: 207 NILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGT 241
           N+LL ++   K+ DFG +  +   + + +T V GT
Sbjct: 149 NVLLSEHGEVKLADFGVAGQLTDTQIKRNTFV-GT 182

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 3eyg_A* 3eyh_A* Length = 302

 Score = 62.7 bits (153), Expect = 9e-12
 Identities = 31/156 (19%), Positives = 60/156 (38%), Gaps = 32/156 (20%)

Query: 108 YDRMIGRGGYGTVFLGSL---SDNKAI--AIKKSRIVY-QSQIEQCINKVVVLSQINHRN 161
             R +G G +G V L       DN     A+K  +     + I     ++ +L  + H N
Sbjct: 25  RIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHEN 84

Query: 162 VVGLLGCCLETEV-PL-LVNEFVKL-----------PTISWEVRIRIAAETA------ED 202
           +V   G C E     + L+ EF+               I+ + +++ A +          
Sbjct: 85  IVKYKGICTEDGGNGIKLIMEFLPSGSLKEYLPKNKNKINLKQQLKYAVQICKGMDYLGS 144

Query: 203 IKSI-------NILLDDNYTTKVCDFGASKLVPIDE 231
            + +       N+L++  +  K+ DFG +K +  D+
Sbjct: 145 RQYVHRDLAARNVLVESEHQVKIGDFGLTKAIETDK 180

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* Length = 318

 Score = 62.4 bits (152), Expect = 1e-11
 Identities = 34/154 (22%), Positives = 56/154 (36%), Gaps = 30/154 (19%)

Query: 108 YDRMIGRGGYGTVFLGSL---SDNKAI--AIKKSRIVYQSQIEQCINK-VVVLSQINHRN 161
             R +G G +G V L      +D      A+K  +     Q      + + +L  + H +
Sbjct: 35  KIRDLGEGHFGKVSLYCYDPTNDGTGEMVAVKALKADAGPQHRSGWKQEIDILRTLYHEH 94

Query: 162 VVGLLGCCLETEVP--LLVNEFVKL---------PTISWEVRIRIAAETA------EDIK 204
           ++   GCC +       LV E+V L          +I     +  A +            
Sbjct: 95  IIKYKGCCEDAGAASLQLVMEYVPLGSLRDYLPRHSIGLAQLLLFAQQICEGMAYLHAQH 154

Query: 205 SI-------NILLDDNYTTKVCDFGASKLVPIDE 231
            I       N+LLD++   K+ DFG +K VP   
Sbjct: 155 YIHRDLAARNVLLDNDRLVKIGDFGLAKAVPEGH 188

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B Length = 454

 Score = 62.8 bits (153), Expect = 1e-11
 Identities = 29/148 (19%), Positives = 63/148 (42%), Gaps = 29/148 (19%)

Query: 110 RMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCC 169
           + +G G +G V++ + + +  +A+K  +    S  E  + +  V+  + H  +V L    
Sbjct: 194 KKLGAGQFGEVWMATYNKHTKVAVKTMKPGSMSV-EAFLAEANVMKTLQHDKLVKLHAVV 252

Query: 170 LETEVPL-LVNEFVKL------------PTISWEVRIRIAAETAE-------------DI 203
             T+ P+ ++ EF+                      I  +A+ AE             D+
Sbjct: 253 --TKEPIYIITEFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIEQRNYIHRDL 310

Query: 204 KSINILLDDNYTTKVCDFGASKLVPIDE 231
           ++ NIL+  +   K+ DFG ++++  +E
Sbjct: 311 RAANILVSASLVCKIADFGLARVIEDNE 338

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A* Length = 294

 Score = 61.8 bits (151), Expect = 2e-11
 Identities = 38/181 (20%), Positives = 62/181 (34%), Gaps = 47/181 (25%)

Query: 105 NYAYDRMIGRGGYGTVFLG-SLSDNKAIAIK---KSRIVYQSQIEQCINKVVVLSQINHR 160
            Y   R +G+GG+   F        +  A K   KS ++   Q E+   ++ +   + H+
Sbjct: 16  RYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQ 75

Query: 161 NVVGLLGCCLETEVPL-LVNEFV-------------KLPTISWEVRIRIAAETAE----- 201
           +VVG  G   E    + +V E                L     E R     +        
Sbjct: 76  HVVGFHG-FFEDNDFVFVVLELCRRRSLLELHKRRKALTE--PEAR-YYLRQIVLGCQYL 131

Query: 202 --------DIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTLGYYLHTSQGTL 253
                   D+K  N+ L+++   K+ DFG           L+T V+   G       GT 
Sbjct: 132 HRNRVIHRDLKLGNLFLNEDLEVKIGDFG-----------LATKVE-YDGERKKVLCGTP 179

Query: 254 N 254
           N
Sbjct: 180 N 180

>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A* Length = 437

 Score = 62.1 bits (151), Expect = 2e-11
 Identities = 38/176 (21%), Positives = 71/176 (40%), Gaps = 30/176 (17%)

Query: 98  ELKIATNNYAYDRMIGRGGYGTVFLGSLSDNKAI-AIK---KSRIVYQSQIEQCINKVVV 153
           ++++   ++   ++IGRG +G V +  L +   + A+K   K  ++ +++      +  V
Sbjct: 68  QMRLHREDFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDV 127

Query: 154 LSQINHRNVVGLLGCCLETEVPL-LVNEFV----------KLPTISWEVRIRI-AAETAE 201
           L   + + +  L     + +  L LV ++           K      E   R   AE   
Sbjct: 128 LVNGDSKWITTLH-YAFQDDNNLYLVMDYYVGGDLLTLLSKFEDRLPEEMARFYLAEMVI 186

Query: 202 -------------DIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTLGY 244
                        DIK  NIL+D N   ++ DFG+   +  D T  S++  GT  Y
Sbjct: 187 AIDSVHQLHYVHRDIKPDNILMDMNGHIRLADFGSCLKLMEDGTVQSSVAVGTPDY 242

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 3fpq_A Length = 290

 Score = 61.6 bits (150), Expect = 2e-11
 Identities = 28/167 (16%), Positives = 57/167 (34%), Gaps = 36/167 (21%)

Query: 108 YDRMIGRGGYGTVFLG-SLSDNKAIAIKKSRIVYQS--QIEQCINKVVVLSQINHRNVVG 164
           +D  IGRG + TV+ G        +A  + +    +  + ++   +  +L  + H N+V 
Sbjct: 30  FDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVR 89

Query: 165 LLGCCLETEVP----LLVNEFV----------KLPTISWEVRIRIAAETAE--------- 201
                  T       +LV E +          +   +  +V      +  +         
Sbjct: 90  FYDSWESTVKGKKCIVLVTELMTSGTLKTYLKRFKVMKIKVLRSWCRQILKGLQFLHTRT 149

Query: 202 ------DIKSINILLDDNY-TTKVCDFGASKLVPIDETQLSTMVQGT 241
                 D+K  NI +     + K+ D G + L     +    ++ GT
Sbjct: 150 PPIIHRDLKCDNIFITGPTGSVKIGDLGLATL--KRASFAKAVI-GT 193

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* 2jiu_A* ... Length = 327

 Score = 62.0 bits (151), Expect = 2e-11
 Identities = 31/153 (20%), Positives = 63/153 (41%), Gaps = 31/153 (20%)

Query: 109 DRMIGRGGYGTVFLGSLSDNK-----AIAIKKSRIVY-QSQIEQCINKVVVLSQINHRNV 162
            +++G G +GTV+ G            +AIK+ R        ++ +++  V++ +++ +V
Sbjct: 20  IKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHV 79

Query: 163 VGLLGCCLETEVPLLVNEFVKL-----------PTISWEVRIRIAAETA------EDIKS 205
             LLG CL      L+ + +               I  +  +    + A      ED + 
Sbjct: 80  CRLLGICLT-STVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRRL 138

Query: 206 I-------NILLDDNYTTKVCDFGASKLVPIDE 231
           +       N+L+      K+ DFG +KL+  +E
Sbjct: 139 VHRDLAARNVLVKTPQHVKITDFGLAKLLGAEE 171

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens} Length = 325

 Score = 61.9 bits (151), Expect = 2e-11
 Identities = 32/173 (18%), Positives = 66/173 (38%), Gaps = 41/173 (23%)

Query: 109 DRMIGRGGYGTVFLGSL----SDNKAIAIKKSRIVYQSQIEQC-INKVVVLSQINHRNVV 163
           +++IG G  G V  G L      +  +AIK  +  Y  +  +  +++  ++ Q +H N++
Sbjct: 54  EKIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGYTERQRRDFLSEASIMGQFDHPNII 113

Query: 164 GLLGCCLETEVPLLVNEFVKL-----------PTISWEVRIRIAAETA------EDIKSI 206
            L G      + ++V E+++               +    + +            D+  +
Sbjct: 114 RLEGVVTRGRLAMIVTEYMENGSLDTFLRTHDGQFTIMQLVGMLRGVGAGMRYLSDLGYV 173

Query: 207 -------NILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTLGYYLHTSQGT 252
                  N+L+D N   KV DFG S+++  D                +T+ G 
Sbjct: 174 HRDLAARNVLVDSNLVCKVSDFGLSRVLEDDP------------DAAYTTTGG 214

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens} Length = 319

 Score = 61.7 bits (150), Expect = 3e-11
 Identities = 36/182 (19%), Positives = 67/182 (36%), Gaps = 36/182 (19%)

Query: 97  GELKIATNNYAYDRMIGRGGYGTVFLG-SLSDNKAIAIKK-SRIVYQSQIEQCINKVVVL 154
           G    + + +    ++G+G    VF G         AIK  + I +   ++  + +  VL
Sbjct: 2   GSQSTSNHLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVL 61

Query: 155 SQINHRNVVGLLGC--CLETEVPLLVNEFV-------------KLPTISWEVRIRIAAET 199
            ++NH+N+V L        T   +L+ EF                  +     + +  + 
Sbjct: 62  KKLNHKNIVKLFAIEEETTTRHKVLIMEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDV 121

Query: 200 AE-------------DIKSINILL----DDNYTTKVCDFGASKLVPIDETQLSTMVQGTL 242
                          +IK  NI+     D     K+ DFGA++ +  D+ Q  ++  GT 
Sbjct: 122 VGGMNHLRENGIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAARELE-DDEQFVSLY-GTE 179

Query: 243 GY 244
            Y
Sbjct: 180 EY 181

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A* Length = 291

 Score = 61.1 bits (149), Expect = 3e-11
 Identities = 34/151 (22%), Positives = 65/151 (43%), Gaps = 29/151 (19%)

Query: 109 DRMIGRGGYGTVFLGSLSDNKA---IAIK--KSRIVYQSQIEQCINKVVVLSQINHRNVV 163
           D+ +G G +GTV  G     K    +A+K  K+     +  ++ + +  V+ Q+++  +V
Sbjct: 22  DKELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIV 81

Query: 164 GLLGCCLETEVPLLVNEFVKL----------PTISWEVRIRIAAETA------EDIKSI- 206
            ++G C   E  +LV E  +L            +  +  I +  + +      E+   + 
Sbjct: 82  RMIGICEA-ESWMLVMEMAELGPLNKYLQQNRHVKDKNIIELVHQVSMGMKYLEESNFVH 140

Query: 207 ------NILLDDNYTTKVCDFGASKLVPIDE 231
                 N+LL   +  K+ DFG SK +  DE
Sbjct: 141 RDLAARNVLLVTQHYAKISDFGLSKALRADE 171

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A* Length = 325

 Score = 61.6 bits (150), Expect = 3e-11
 Identities = 36/174 (20%), Positives = 68/174 (39%), Gaps = 38/174 (21%)

Query: 88  SDTAKIFTAGELKIATNNYAYDRMIGRGGYGTVFLGSL---SDNKAI--AIKKSRIVYQS 142
              A+IF   EL+         +++G G +GTV  G      ++  I   IK        
Sbjct: 4   KVLARIFKETELRK-------LKVLGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDKSGR 56

Query: 143 Q-IEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEFVKL-----------PTISWE 190
           Q  +   + ++ +  ++H ++V LLG C       LV +++ L             +  +
Sbjct: 57  QSFQAVTDHMLAIGSLDHAHIVRLLGLCPG-SSLQLVTQYLPLGSLLDHVRQHRGALGPQ 115

Query: 191 VRIRIAAETA------EDIKSI-------NILLDDNYTTKVCDFGASKLVPIDE 231
           + +    + A      E+   +       N+LL      +V DFG + L+P D+
Sbjct: 116 LLLNWGVQIAKGMYYLEEHGMVHRNLAARNVLLKSPSQVQVADFGVADLLPPDD 169

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ... Length = 322

 Score = 61.2 bits (149), Expect = 4e-11
 Identities = 32/158 (20%), Positives = 62/158 (39%), Gaps = 40/158 (25%)

Query: 110 RMIGRGGYGTVFLGSLSD------NKAIAIKK-SRIVYQSQIEQCINKVVVLSQINHRNV 162
           R +G+G +G V+ G             +AIK  +      +  + +N+  V+ + N  +V
Sbjct: 31  RELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHV 90

Query: 163 VGLLGCCLETEVPLLVNEFVK--------------------LPTISWEVRIRIAAETA-- 200
           V LLG   + +  L++ E +                     L   S    I++A E A  
Sbjct: 91  VRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADG 150

Query: 201 ----EDIKSI-------NILLDDNYTTKVCDFGASKLV 227
                  K +       N ++ +++T K+ DFG ++ +
Sbjct: 151 MAYLNANKFVHRDLAARNCMVAEDFTVKIGDFGMTRDI 188

>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens} Length = 412

 Score = 61.3 bits (149), Expect = 4e-11
 Identities = 39/176 (22%), Positives = 67/176 (38%), Gaps = 30/176 (17%)

Query: 98  ELKIATNNYAYDRMIGRGGYGTVFLGSLSDNKAI-AIK---KSRIVYQSQIEQCINKVVV 153
           E+++  +++   ++IGRG +  V +  +     + A+K   K  ++ + ++     +  V
Sbjct: 55  EVRLQRDDFEILKVIGRGAFSEVAVVKMKQTGQVYAMKIMNKWDMLKRGEVSCFREERDV 114

Query: 154 LSQINHRNVVGLLGCCLETEVPL-LVNEFV----------KLPTISWEVRIRI-AAETAE 201
           L   + R +  L     + E  L LV E+           K          R   AE   
Sbjct: 115 LVNGDRRWITQLH-FAFQDENYLYLVMEYYVGGDLLTLLSKFGERIPAEMARFYLAEIVM 173

Query: 202 -------------DIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTLGY 244
                        DIK  NILLD     ++ DFG+   +  D T  S +  GT  Y
Sbjct: 174 AIDSVHRLGYVHRDIKPDNILLDRCGHIRLADFGSCLKLRADGTVRSLVAVGTPDY 229

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ... Length = 373

 Score = 60.8 bits (148), Expect = 6e-11
 Identities = 32/173 (18%), Positives = 70/173 (40%), Gaps = 41/173 (23%)

Query: 109 DRMIGRGGYGTVFLGSL----SDNKAIAIKKSRIVYQSQIEQC-INKVVVLSQINHRNVV 163
           D+++G G +G V  G L        ++AIK  ++ Y  +  +  + +  ++ Q +H N++
Sbjct: 50  DKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNII 109

Query: 164 GLLGCCLETEVPLLVNEFVKL-----------PTISWEVRIRIAAETA------EDIKSI 206
            L G   +++  ++V E+++               +    + +    A       D+  +
Sbjct: 110 RLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFTVIQLVGMLRGIASGMKYLSDMGYV 169

Query: 207 -------NILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTLGYYLHTSQGT 252
                  NIL++ N   KV DFG  +++  D                +T++G 
Sbjct: 170 HRDLAARNILINSNLVCKVSDFGLGRVLEDDP------------EAAYTTRGG 210

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens} Length = 278

 Score = 60.2 bits (147), Expect = 6e-11
 Identities = 32/173 (18%), Positives = 61/173 (35%), Gaps = 37/173 (21%)

Query: 104 NNYAYDRMIGRGGYGTVFLG-SLSDNKAIAIK---KSRIVYQSQIEQCINKVVVLSQINH 159
            ++    ++G+G +  V+   S+     +AIK   K  +     +++  N+V +  Q+ H
Sbjct: 11  EDFKVGNLLGKGSFAGVYRAESIHTGLEVAIKMIDKKAMYKAGMVQRVQNEVKIHCQLKH 70

Query: 160 RNVVGLLGCCLETEVPL-LVNEFVK--------------LPTISWEVRIRIAAETAE--- 201
            +++ L     E    + LV E                       E R     +      
Sbjct: 71  PSILELYN-YFEDSNYVYLVLEMCHNGEMNRYLKNRVKPFS--ENEAR-HFMHQIITGML 126

Query: 202 ----------DIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTLGY 244
                     D+   N+LL  N   K+ DFG +  + +   +  T+  GT  Y
Sbjct: 127 YLHSHGILHRDLTLSNLLLTRNMNIKIADFGLATQLKMPHEKHYTLC-GTPNY 178

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens} Length = 396

 Score = 61.0 bits (148), Expect = 6e-11
 Identities = 36/182 (19%), Positives = 67/182 (36%), Gaps = 36/182 (19%)

Query: 97  GELKIATNNYAYDRMIGRGGYGTVFLG-SLSDNKAIAIKK-SRIVYQSQIEQCINKVVVL 154
           G    + + +    ++G+G    VF G         AIK  + I +   ++  + +  VL
Sbjct: 2   GSQSTSNHLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVL 61

Query: 155 SQINHRNVVGLLGC--CLETEVPLLVNEFV-------------KLPTISWEVRIRIAAET 199
            ++NH+N+V L        T   +L+ EF                  +     + +  + 
Sbjct: 62  KKLNHKNIVKLFAIEEETTTRHKVLIMEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDV 121

Query: 200 AE-------------DIKSINILL----DDNYTTKVCDFGASKLVPIDETQLSTMVQGTL 242
                          +IK  NI+     D     K+ DFGA++ +  D+ Q  ++  GT 
Sbjct: 122 VGGMNHLRENGIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAARELE-DDEQFVSLY-GTE 179

Query: 243 GY 244
            Y
Sbjct: 180 EY 181

>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens} Length = 384

 Score = 60.4 bits (147), Expect = 7e-11
 Identities = 37/167 (22%), Positives = 71/167 (42%), Gaps = 39/167 (23%)

Query: 110 RMIGRGGYGTVFLGSLSDNKAI-AIK---KSRIVYQSQIEQCINKVVVLSQINHRNVVGL 165
           R IG+G +G V +   +D K + A+K   K + V ++++     ++ ++  + H  +V L
Sbjct: 21  RAIGKGSFGKVCIVQKNDTKKMYAMKYMNKQKCVERNEVRNVFKELQIMQGLEHPFLVNL 80

Query: 166 LGCCLETEVPL-LVNEFV-------------KLPTISWEVRIRI-AAETA---------- 200
                + E  + +V + +                    E  +++   E            
Sbjct: 81  W-YSFQDEEDMFMVVDLLLGGDLRYHLQQNVHFK----EETVKLFICELVMALDYLQNQR 135

Query: 201 ---EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTLGY 244
               D+K  NILLD++    + DF  + ++P  ETQ++TM  GT  Y
Sbjct: 136 IIHRDMKPDNILLDEHGHVHITDFNIAAMLP-RETQITTMA-GTKPY 180

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7 Length = 333

 Score = 60.4 bits (147), Expect = 7e-11
 Identities = 30/153 (19%), Positives = 63/153 (41%), Gaps = 30/153 (19%)

Query: 109 DRMIGRGGYGTVFLGSLSDNKA-----IAIKKSRIVYQSQIEQC-INKVVVLSQINHRNV 162
            ++IG G +G V+ G L  +       +AIK  +  Y  +     + +  ++ Q +H N+
Sbjct: 49  QKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNI 108

Query: 163 VGLLGCCLETEVPLLVNEFVKL-----------PTISWEVRIRIAAETA------EDIKS 205
           + L G   + +  +++ E+++               S    + +    A       ++  
Sbjct: 109 IRLEGVISKYKPMMIITEYMENGALDKFLREKDGEFSVLQLVGMLRGIAAGMKYLANMNY 168

Query: 206 I-------NILLDDNYTTKVCDFGASKLVPIDE 231
           +       NIL++ N   KV DFG S+++  D 
Sbjct: 169 VHRDLAARNILVNSNLVCKVSDFGLSRVLEDDP 201

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A Length = 450

 Score = 60.4 bits (147), Expect = 9e-11
 Identities = 34/144 (23%), Positives = 66/144 (45%), Gaps = 33/144 (22%)

Query: 110 RMIGRGGYGTVFLGSLSDNKAIAIK--KSRIVYQSQIEQCINKVVVLSQINHRNVVGLLG 167
           + IG+G +G V LG    NK +A+K  K+     +  +  + +  V++Q+ H N+V LLG
Sbjct: 199 QTIGKGEFGDVMLGDYRGNK-VAVKCIKND----ATAQAFLAEASVMTQLRHSNLVQLLG 253

Query: 168 CCLETEVPL-LVNEFVKL------------PTISWEVRIRIAAETAE------------- 201
             +E +  L +V E++                +  +  ++ + +  E             
Sbjct: 254 VIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGNNFVHR 313

Query: 202 DIKSINILLDDNYTTKVCDFGASK 225
           D+ + N+L+ ++   KV DFG +K
Sbjct: 314 DLAARNVLVSEDNVAKVSDFGLTK 337

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A* Length = 278

 Score = 59.1 bits (144), Expect = 1e-10
 Identities = 36/168 (21%), Positives = 68/168 (40%), Gaps = 33/168 (19%)

Query: 86  GSSDTAKIFTAGELKIATNNYAYDRMIGRGGYGTVFLGSLSDNKAIAIK--KSRIVYQSQ 143
           GS      F      +        + IG+G +G V LG    NK +A+K  K+     + 
Sbjct: 3   GSVAAQDEFYRSGWALNMKELKLLQTIGKGEFGDVMLGDYRGNK-VAVKCIKN----DAT 57

Query: 144 IEQCINKVVVLSQINHRNVVGLLGCCLETEVPL-LVNEFVKL------------PTISWE 190
            +  + +  V++Q+ H N+V LLG  +E +  L +V E++                +  +
Sbjct: 58  AQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGD 117

Query: 191 VRIRIAAETA------EDIKSI-------NILLDDNYTTKVCDFGASK 225
             ++ + +        E    +       N+L+ ++   KV DFG +K
Sbjct: 118 CLLKFSLDVCEAMEYLEGNNFVHRDLAARNVLVSEDNVAKVSDFGLTK 165

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens} Length = 305

 Score = 59.2 bits (144), Expect = 1e-10
 Identities = 35/181 (19%), Positives = 58/181 (32%), Gaps = 45/181 (24%)

Query: 105 NYAYDRMIGRGGYGTVFLG-SLSDNKAIAIK---KSRIVYQSQIEQCINK-VVVLSQINH 159
            Y    ++G G YG V            A+K   K ++      E  + K + +L ++ H
Sbjct: 6   KYLMGDLLGEGSYGKVKEVLDSETLCRRAVKILKKKKLRRIPNGEANVKKEIQLLRRLRH 65

Query: 160 RNVVGLLG-CCLETEVPL-LVNEFVKLPTISWE-----VRIRIAAETAE----------- 201
           +NV+ L+     E +  + +V E+        E        R     A            
Sbjct: 66  KNVIQLVDVLYNEEKQKMYMVMEYCV--CGMQEMLDSVPEKRFPVCQAHGYFCQLIDGLE 123

Query: 202 ----------DIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTLGYYLHTSQG 251
                     DIK  N+LL    T K+   G ++           +          TSQG
Sbjct: 124 YLHSQGIVHKDIKPGNLLLTTGGTLKISALGVAEA----------LHPFAADDTCRTSQG 173

Query: 252 T 252
           +
Sbjct: 174 S 174

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens} Length = 613

 Score = 60.0 bits (145), Expect = 1e-10
 Identities = 31/151 (20%), Positives = 59/151 (39%), Gaps = 29/151 (19%)

Query: 109 DRMIGRGGYGTVFLGSL-SDNKAI--AIKKSRIVYQSQIEQCINK-VVVLSQINHRNVVG 164
           D  +G G +G+V  G      K I  AIK  +   +    + + +   ++ Q+++  +V 
Sbjct: 341 DIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVR 400

Query: 165 LLGCCLETEVPLLVNEFVKL-----------PTISWEVRIRIAAETA------EDIKSI- 206
           L+G C    + +LV E                 I       +  + +      E+   + 
Sbjct: 401 LIGVCQAEAL-MLVMEMAGGGPLHKFLVGKREEIPVSNVAELLHQVSMGMKYLEEKNFVH 459

Query: 207 ------NILLDDNYTTKVCDFGASKLVPIDE 231
                 N+LL + +  K+ DFG SK +  D+
Sbjct: 460 RNLAARNVLLVNRHYAKISDFGLSKALGADD 490

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A* Length = 289

 Score = 58.9 bits (143), Expect = 2e-10
 Identities = 30/199 (15%), Positives = 59/199 (29%), Gaps = 57/199 (28%)

Query: 103 TNNYAYDRMIGRGGYGTVFLG-SLSDNKAIAIKKSRIVYQSQ--IEQCINKVVVLSQI-N 158
           T  +     IG G +G+VF      D    AIK+S+         +  + +V   + +  
Sbjct: 10  TTEFHELEKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLAGSVDEQNALREVYAHAVLGQ 69

Query: 159 HRNVVGLLGCCLETEVPLLVNEFV-------------KLPTISWEVRIR-IAAETAE--- 201
           H +VV       E +  L+ NE+              ++ +   E  ++ +  +      
Sbjct: 70  HSHVVRYFSAWAEDDHMLIQNEYCNGGSLADAISENYRIMSYFKEAELKDLLLQVGRGLR 129

Query: 202 ----------DIKSINILLDDN-------------------YTTKVCDFGASKLVPIDET 232
                     DIK  NI +                         K+ D G    +   + 
Sbjct: 130 YIHSMSLVHMDIKPSNIFISRTSIPNAASEEGDEDDWASNKVMFKIGDLGHVTRISSPQV 189

Query: 233 QLST-------MVQGTLGY 244
           +          ++Q    +
Sbjct: 190 EEGDSRFLANEVLQENYTH 208

>1uu3_A HPDK1, 3-phosphoinositide dependent protein kinase-1; PKB, inhibitor, LY333531, diabetes, cancer, transferase, serine/threonine-protein kinase; HET: SEP LY4; 1.7A {Homo sapiens} SCOP: d.144.1.7 PDB: 1okz_A* 1oky_A* 1uu7_A* 1uu8_A* 2biy_A* 3rwp_A* 2xch_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* ... Length = 310

 Score = 59.2 bits (144), Expect = 2e-10
 Identities = 32/156 (20%), Positives = 61/156 (39%), Gaps = 31/156 (19%)

Query: 110 RMIGRGGYGTVFLGSLSDNKAI-AIK---KSRIVYQSQIEQCINKVVVLSQINHRNVVGL 165
           +++G G + TV L          AIK   K  I+ ++++     +  V+S+++H   V L
Sbjct: 36  KILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKL 95

Query: 166 LGCCLETEVPL-LVNEFV----------KLPTISWEVRIRI-AAETAE------------ 201
                + +  L     +           K+ +   E   R   AE               
Sbjct: 96  YFTF-QDDEKLYFGLSYAKNGELLKYIRKIGSFD-ETCTRFYTAEIVSALEYLHGKGIIH 153

Query: 202 -DIKSINILLDDNYTTKVCDFGASKLVPIDETQLST 236
            D+K  NILL+++   ++ DFG +K++  +  Q   
Sbjct: 154 RDLKPENILLNEDMHIQITDFGTAKVLSPESKQARA 189

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B* Length = 291

 Score = 58.8 bits (143), Expect = 2e-10
 Identities = 35/155 (22%), Positives = 57/155 (36%), Gaps = 34/155 (21%)

Query: 109 DRMIGRGGYGTVFLGSL----SDNKAIAIKKSRIVYQSQIEQC---INKVVVLSQINHRN 161
              +G G +G V  G          ++A+K  +    SQ E     I +V  +  ++HRN
Sbjct: 23  LEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRN 82

Query: 162 VVGLLGCCLETEVPL-LVNEFVKL-----------PTISWEVRIRIAAETA------EDI 203
           ++ L G  L    P+ +V E   L                    R A + A      E  
Sbjct: 83  LIRLYGVVLTP--PMKMVTELAPLGSLLDRLRKHQGHFLLGTLSRYAVQVAEGMGYLESK 140

Query: 204 KSI-------NILLDDNYTTKVCDFGASKLVPIDE 231
           + I       N+LL      K+ DFG  + +P ++
Sbjct: 141 RFIHRDLAARNLLLATRDLVKIGDFGLMRALPQND 175

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens} Length = 329

 Score = 59.2 bits (144), Expect = 2e-10
 Identities = 28/164 (17%), Positives = 57/164 (34%), Gaps = 44/164 (26%)

Query: 108 YDRMIGRGGYGTVFLGSL------SDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRN 161
               +G G +G VFL          D   +A+K  +   +S  +    +  +L+ + H++
Sbjct: 45  LKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQH 104

Query: 162 VVGLLGCCLETEVPLLVNEFVK-------------------------LPTISWEVRIRIA 196
           +V   G C E    L+V E+++                            +     + +A
Sbjct: 105 IVRFFGVCTEGRPLLMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVA 164

Query: 197 AETA------EDIKSI-------NILLDDNYTTKVCDFGASKLV 227
           ++ A        +  +       N L+      K+ DFG S+ +
Sbjct: 165 SQVAAGMVYLAGLHFVHRDLATRNCLVGQGLVVKIGDFGMSRDI 208

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A* Length = 446

 Score = 59.4 bits (144), Expect = 2e-10
 Identities = 42/196 (21%), Positives = 68/196 (34%), Gaps = 39/196 (19%)

Query: 82  SKRSGSSDTAKIFTAGELKIATNNYAYDRMIGRGGYGTVFLGSLSDNKAI----AIKKSR 137
           S  SG+ +        + ++  N + Y +++G+G +G V L              +KK  
Sbjct: 126 SDNSGAEEMEVSLAKPKHRVTMNEFEYLKLLGKGTFGKVILVKEKATGRYYAMKILKKEV 185

Query: 138 IVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPL-LVNEFV-------------K 183
           IV + ++   + +  VL    H  +  L     +T   L  V E+               
Sbjct: 186 IVAKDEVAHTLTENRVLQNSRHPFLTALK-YSFQTHDRLCFVMEYANGGELFFHLSRERV 244

Query: 184 LPTISWEVRIRI-AAETA--------------EDIKSINILLDDNYTTKVCDFGASKLVP 228
                 E R R   AE                 D+K  N++LD +   K+ DFG  K   
Sbjct: 245 FS----EDRARFYGAEIVSALDYLHSEKNVVYRDLKLENLMLDKDGHIKITDFGLCKEGI 300

Query: 229 IDETQLSTMVQGTLGY 244
            D   + T   GT  Y
Sbjct: 301 KDGATMKTFC-GTPEY 315

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} Length = 681

 Score = 59.5 bits (144), Expect = 2e-10
 Identities = 29/178 (16%), Positives = 57/178 (32%), Gaps = 55/178 (30%)

Query: 106 YAYDRMIGRGGYGTVFLG---SLSDNKAIAIK----------KSRIVYQSQIEQCINKVV 152
           Y     I  GG G ++L    ++ + + + +K          ++  + + Q         
Sbjct: 82  YEVKGCIAHGGLGWIYLALDRNV-NGRPVVLKGLVHSGDAEAQAMAMAERQF-------- 132

Query: 153 VLSQINHRNVV-----GLLGCCLETEVPLLVNEFVKLPT--------ISWEVRIRIAAET 199
            L+++ H ++V               V  +V E+V   +        +     I    E 
Sbjct: 133 -LAEVVHPSIVQIFNFVEHTDRHGDPVGYIVMEYVGGQSLKRSKGQKLPVAEAIAYLLEI 191

Query: 200 AE-------------DIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTLGY 244
                          D+K  NI+L +    K+ D GA   +         +  GT G+
Sbjct: 192 LPALSYLHSIGLVYNDLKPENIMLTEE-QLKLIDLGAVSRI----NSFGYLY-GTPGF 243

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A* Length = 327

 Score = 58.9 bits (143), Expect = 2e-10
 Identities = 30/167 (17%), Positives = 63/167 (37%), Gaps = 40/167 (23%)

Query: 101 IATNNYAYDRMIGRGGYGTVFLGSLSDNK------AIAIKKSRIVY-QSQIEQCINKVVV 153
           +   N    R +G G +G V+ G +S          +A+K    V  +      + + ++
Sbjct: 27  VPRKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALI 86

Query: 154 LSQINHRNVVGLLGCCLETEVPLLVNEFVK-----------------LPTISWEVRIRIA 196
           +S+ NH+N+V  +G  L++    ++ E +                    +++    + +A
Sbjct: 87  ISKFNHQNIVRCIGVSLQSLPRFILMELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVA 146

Query: 197 AETA------EDIKSI-------NILLD---DNYTTKVCDFGASKLV 227
            + A      E+   I       N LL         K+ DFG ++ +
Sbjct: 147 RDIACGCQYLEENHFIHRDIAARNCLLTCPGPGRVAKIGDFGMARDI 193

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A* Length = 484

 Score = 58.9 bits (143), Expect = 2e-10
 Identities = 36/177 (20%), Positives = 66/177 (37%), Gaps = 42/177 (23%)

Query: 103 TNNYAYDRMIGRGGYGTVFLG-SLSDNKAIAIK---KSRIVYQSQIEQCINKVVVLSQIN 158
           ++ Y   R++G+G +G V L       +  A+K   K ++  ++  E  + +V +L Q++
Sbjct: 25  SDRYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLLKQLD 84

Query: 159 HRNVVGLLGCCLETEVPLLVNEFVK---LPTISWEVRI--------RIAAETAE------ 201
           H N++ L     +     LV E      L    ++  I          AA          
Sbjct: 85  HPNIMKLYEFFEDKGYFYLVGEVYTGGEL----FD-EIISRKRFSEVDAARIIRQVLSGI 139

Query: 202 -----------DIKSINILL---DDNYTTKVCDFGASKLVPIDETQLSTMVQGTLGY 244
                      D+K  N+LL     +   ++ DFG S     + ++      GT  Y
Sbjct: 140 TYMHKNKIVHRDLKPENLLLESKSKDANIRIIDFGLSTH--FEASKKMKDKIGTAYY 194

>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A* Length = 410

 Score = 58.9 bits (143), Expect = 3e-10
 Identities = 38/178 (21%), Positives = 67/178 (37%), Gaps = 36/178 (20%)

Query: 98  ELKIATNNYAYDRMIGRGGYGTVFLGSLSDNKAI-AIK---KSRIVYQSQIEQCINKVVV 153
           +L++   +Y   ++IGRG +G V L      + + A+K   K  ++ +S       +  +
Sbjct: 63  DLRMKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDI 122

Query: 154 LSQINHRNVVGLLGCCLETEVPL-LVNEFV------------KLPTISWEVRIRI-AAET 199
           ++  N   VV L     + +  L +V E++             +P    E   R   AE 
Sbjct: 123 MAFANSPWVVQLF-YAFQDDRYLYMVMEYMPGGDLVNLMSNYDVP----EKWARFYTAEV 177

Query: 200 AE-------------DIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTLGY 244
                          D+K  N+LLD +   K+ DFG    +  +         GT  Y
Sbjct: 178 VLALDAIHSMGFIHRDVKPDNMLLDKSGHLKLADFGTCMKMNKEGMVRCDTAVGTPDY 235

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ... Length = 316

 Score = 58.0 bits (141), Expect = 4e-10
 Identities = 37/169 (21%), Positives = 63/169 (37%), Gaps = 50/169 (29%)

Query: 108 YDRMIGRGGYGTVFLGSL------SDNKAIAIK--KSRIVYQSQIEQCINKVVVLSQI-N 158
             + +GRG +G V           +  + +A+K  K      S+    ++++ +L  I +
Sbjct: 31  LGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGAT-HSEHRALMSELKILIHIGH 89

Query: 159 HRNVVGLLGCCLETEVPLLV---------------------------NEFVKLPTISWEV 191
           H NVV LLG C +   PL+V                            E +    ++ E 
Sbjct: 90  HLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEH 149

Query: 192 RIRIAAETA------EDIKSI-------NILLDDNYTTKVCDFGASKLV 227
            I  + + A         K I       NILL +    K+CDFG ++ +
Sbjct: 150 LICYSFQVAKGMEFLASRKCIHRDLAARNILLSEKNVVKICDFGLARDI 198

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A* Length = 303

 Score = 57.7 bits (140), Expect = 4e-10
 Identities = 36/174 (20%), Positives = 63/174 (36%), Gaps = 40/174 (22%)

Query: 112 IGRGGYGTVFLG-SLSDNKAIAIKKSRI-VYQSQIEQCINKVVVLSQINHRNVVGLLGCC 169
           IG G    V         + +AIK+  +   Q+ +++ + ++  +SQ +H N+V      
Sbjct: 23  IGSGATAVVQAAYCAPKKEKVAIKRINLEKCQTSMDELLKEIQAMSQCHHPNIVSYYTSF 82

Query: 170 LETEVPLLVNEF---------VKLPTISWEVRIR------IAAETAE------------- 201
           +  +   LV +          +K      E +        IA    E             
Sbjct: 83  VVKDELWLVMKLLSGGSVLDIIKHIVAKGEHKSGVLDESTIATILREVLEGLEYLHKNGQ 142

Query: 202 ---DIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTLGYYLHTSQGT 252
              D+K+ NILL ++ + ++ DFG S         L+T    T      T  GT
Sbjct: 143 IHRDVKAGNILLGEDGSVQIADFGVS-------AFLATGGDITRNKVRKTFVGT 189

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ... Length = 334

 Score = 57.3 bits (139), Expect = 8e-10
 Identities = 24/169 (14%), Positives = 58/169 (34%), Gaps = 49/169 (28%)

Query: 108 YDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIV---------YQSQIEQCINKVVVLSQI- 157
             + +G G +G V +           K++  V          +  +   ++++ ++  I 
Sbjct: 39  LGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIG 98

Query: 158 NHRNVVGLLGCCLETEVPLLVNEFVK--------------------------LPTISWEV 191
            H+N++ LLG C +     ++ E+                               ++++ 
Sbjct: 99  KHKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKD 158

Query: 192 RIRIAAETA------EDIKSI-------NILLDDNYTTKVCDFGASKLV 227
            +    + A         K I       N+L+ +N   K+ DFG ++ +
Sbjct: 159 LVSCTYQLARGMEYLASQKCIHRDLAARNVLVTENNVMKIADFGLARDI 207

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens} Length = 367

 Score = 57.0 bits (138), Expect = 1e-09
 Identities = 29/158 (18%), Positives = 61/158 (38%), Gaps = 40/158 (25%)

Query: 110 RMIGRGGYGTVFLGSLSDNK------AIAIKKSRIVY-QSQIEQCINKVVVLSQINHRNV 162
           R +G G +G V+ G +S          +A+K    V  +      + + +++S+ NH+N+
Sbjct: 77  RGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNI 136

Query: 163 VGLLGCCLETEVPLLVNEFVK-----------------LPTISWEVRIRIAAETA----- 200
           V  +G  L++    ++ E +                    +++    + +A + A     
Sbjct: 137 VRCIGVSLQSLPRFILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQY 196

Query: 201 -EDIKSI-------NILLD---DNYTTKVCDFGASKLV 227
            E+   I       N LL         K+ DFG ++ +
Sbjct: 197 LEENHFIHRDIAARNCLLTCPGPGRVAKIGDFGMARDI 234

>3v5q_A NT-3 growth factor receptor; kinase domain, kinase, phosphorylation, transferase-transfer inhibitor complex; HET: 0F4; 2.20A {Homo sapiens} Length = 297

 Score = 56.5 bits (137), Expect = 1e-09
 Identities = 30/163 (18%), Positives = 57/163 (34%), Gaps = 45/163 (27%)

Query: 110 RMIGRGGYGTVFLGSL------SDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVV 163
           R +G G +G VFL          D   +A+K  +    +  +    +  +L+ + H ++V
Sbjct: 21  RELGEGAFGKVFLAECYNLSPTKDKMLVAVKALKDPTLAARKDFQREAELLTNLQHEHIV 80

Query: 164 GLLGCCLETEVPLLVNEFVK--------------------------LPTISWEVRIRIAA 197
              G C + +  ++V E++K                             +     + IA+
Sbjct: 81  KFYGVCGDGDPLIMVFEYMKHGDLNKFLRAHGPDAMILVDGQPRQAKGELGLSQMLHIAS 140

Query: 198 ETA------EDIKSI-------NILLDDNYTTKVCDFGASKLV 227
           + A           +       N L+  N   K+ DFG S+ V
Sbjct: 141 QIASGMVYLASQHFVHRDLATRNCLVGANLLVKIGDFGMSRDV 183

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7 Length = 287

 Score = 56.5 bits (137), Expect = 1e-09
 Identities = 30/151 (19%), Positives = 59/151 (39%), Gaps = 29/151 (19%)

Query: 109 DRMIGRGGYGTVFLGSL---SDNKAIAIKKSRIVYQS-QIEQCINKVVVLSQINHRNVVG 164
           D  +G G +G+V  G          +AIK  +   +    E+ + +  ++ Q+++  +V 
Sbjct: 15  DIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVR 74

Query: 165 LLGCCLETEVPLLVNEFVKL-----------PTISWEVRIRIAAETA------EDIKSI- 206
           L+G C    + +LV E                 I       +  + +      E+   + 
Sbjct: 75  LIGVCQAEAL-MLVMEMAGGGPLHKFLVGKREEIPVSNVAELLHQVSMGMKYLEEKNFVH 133

Query: 207 ------NILLDDNYTTKVCDFGASKLVPIDE 231
                 N+LL + +  K+ DFG SK +  D+
Sbjct: 134 RDLAARNVLLVNRHYAKISDFGLSKALGADD 164

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A* Length = 327

 Score = 56.5 bits (137), Expect = 1e-09
 Identities = 34/162 (20%), Positives = 59/162 (36%), Gaps = 44/162 (27%)

Query: 108 YDRMIGRGGYGTVFLGSLSDNKA---IAIKKSRIVY-QSQIEQCINKVVVLSQI-NHRNV 162
           +  +IG G +G V    +  +      AIK+ +    +        ++ VL ++ +H N+
Sbjct: 29  FQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNI 88

Query: 163 VGLLGCCLETEVPLLVNEFVK--------------------------LPTISWEVRIRIA 196
           + LLG C       L  E+                              T+S +  +  A
Sbjct: 89  INLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFA 148

Query: 197 AETA------EDIKSI-------NILLDDNYTTKVCDFGASK 225
           A+ A         + I       NIL+ +NY  K+ DFG S+
Sbjct: 149 ADVARGMDYLSQKQFIHRDLAARNILVGENYVAKIADFGLSR 190

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A* Length = 281

 Score = 56.1 bits (136), Expect = 1e-09
 Identities = 28/148 (18%), Positives = 62/148 (41%), Gaps = 30/148 (20%)

Query: 109 DRMIGRGGYGTVFLGSLSDNKA----IAIKKSRIVY-QSQIEQCINKVVVLSQINHRNVV 163
           +R++G G +G V+ G  +++K     +A+K  +        E+ +++ V++  ++H ++V
Sbjct: 17  NRILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKEKFMSEAVIMKNLDHPHIV 76

Query: 164 GLLGCCLETEVPLLVNEFVKL-----------PTISWEVRIRIAAETA------EDIKSI 206
            L+G   E E   ++ E                ++     +  + +        E I  +
Sbjct: 77  KLIGIIEE-EPTWIIMELYPYGELGHYLERNKNSLKVLTLVLYSLQICKAMAYLESINCV 135

Query: 207 -------NILLDDNYTTKVCDFGASKLV 227
                  NIL+      K+ DFG S+ +
Sbjct: 136 HRDIAVRNILVASPECVKLGDFGLSRYI 163

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A Length = 377

 Score = 56.6 bits (136), Expect = 2e-09
 Identities = 13/200 (6%), Positives = 47/200 (23%), Gaps = 65/200 (32%)

Query: 105 NYAYDRMIGRGGYGTVFLG-SLSDNKAIAIK---KSRIVYQSQIEQ-------------- 146
                 ++G+               ++  +     +     + I+Q              
Sbjct: 74  TLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGI 133

Query: 147 -----------CINKVVVLSQINHRNVVGLLG------------------CCLETEVPLL 177
                       I    ++     + ++ +                      L+T   +L
Sbjct: 134 KNQKQAKVHLRFIFPFDLVKDPQKKKMIRVRLDERDMWVLSRFFLYPRMQSNLQTFGEVL 193

Query: 178 VNEFVKLPTISWEVRIRIAAETAE-------------DIKSINILLDDNYTTKVCDFGAS 224
           ++      ++    R+++  +                 ++ ++I+LD      +  F   
Sbjct: 194 LSHSSTHKSLVHHARLQLTLQVIRLLASLHHYGLVHTYLRPVDIVLDQRGGVFLTGFEHL 253

Query: 225 KLVPIDETQLSTMVQGTLGY 244
                       +   + G+
Sbjct: 254 V-----RDGARVVSSVSRGF 268

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A* Length = 314

 Score = 56.1 bits (136), Expect = 2e-09
 Identities = 32/174 (18%), Positives = 61/174 (35%), Gaps = 54/174 (31%)

Query: 108 YDRMIGRGGYGTVFLGSLSD------NKAIAIKKSR-IVYQSQIEQCINKVVVLSQINHR 160
             + +G G +G V   +            +A+K  +     S++   +++  VL Q+NH 
Sbjct: 27  LGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENASPSELRDLLSEFNVLKQVNHP 86

Query: 161 NVVGLLGCCLETEVPLLVNEFVK----------------------------------LPT 186
           +V+ L G C +    LL+ E+ K                                     
Sbjct: 87  HVIKLYGACSQDGPLLLIVEYAKYGSLRGFLRESRKVGPGYLGSGGSRNSSSLDHPDERA 146

Query: 187 ISWEVRIRIAAETA------EDIKSI-------NILLDDNYTTKVCDFGASKLV 227
           ++    I  A + +       ++K +       NIL+ +    K+ DFG S+ V
Sbjct: 147 LTMGDLISFAWQISQGMQYLAEMKLVHRDLAARNILVAEGRKMKISDFGLSRDV 200

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens} Length = 365

 Score = 56.5 bits (136), Expect = 2e-09
 Identities = 26/200 (13%), Positives = 51/200 (25%), Gaps = 48/200 (24%)

Query: 92  KIFTAGELKIATNNYAYDRMIGRGGYGTVFLGSLSDN------KAIAIKKSRIVYQSQIE 145
            I    E ++ +       ++G G +  V+  +  D       +   +K  +     +  
Sbjct: 53  AIKPKTEFQLGSKLVYVHHLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQKPANPWEFY 112

Query: 146 QCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEFVKLPT---------------ISWE 190
                +  L        +      L     +LV E     T               +   
Sbjct: 113 IGTQLMERLKPSMQHMFMKFYSAHLFQNGSVLVGELYSYGTLLNAINLYKNTPEKVMPQG 172

Query: 191 VRIRIAAETAE-------------DIKSINILLDDNYTT-----------KVCDFGASKL 226
           + I  A                  DIK  N +L + +              + D G S  
Sbjct: 173 LVISFAMRMLYMIEQVHDCEIIHGDIKPDNFILGNGFLEQDDEDDLSAGLALIDLGQSID 232

Query: 227 VPI--DETQLSTMVQGTLGY 244
           + +    T  +     T G+
Sbjct: 233 MKLFPKGTIFTAKC-ETSGF 251

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ... Length = 276

 Score = 55.7 bits (135), Expect = 2e-09
 Identities = 38/183 (20%), Positives = 60/183 (32%), Gaps = 51/183 (27%)

Query: 105 NYAYDRMIGRGGYGTVFLG-SLSDNKAIAIKKSRIVYQSQIEQCINKV----VVLSQINH 159
           ++   + +G G YG V L  +    +A+A+K   IV   +   C   +     +   +NH
Sbjct: 8   DWDLVQTLGEGAYGEVQLAVNRVTEEAVAVK---IVDMKRAVDCPENIKKEICINKMLNH 64

Query: 160 RNVVGLLGCCLETEVPL-LVNEFVKLPTISWEV------RIRIAAETAE----------- 201
            NVV   G          L  E+        E+       I +    A+           
Sbjct: 65  ENVVKFYGH-RREGNIQYLFLEYCS----GGELFDRIEPDIGMPEPDAQRFFHQLMAGVV 119

Query: 202 ----------DIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTLGYYLHTSQG 251
                     DIK  N+LLD+    K+ DFG + +                   L+   G
Sbjct: 120 YLHGIGITHRDIKPENLLLDERDNLKISDFGLATV----------FRYNNRERLLNKMCG 169

Query: 252 TLN 254
           TL 
Sbjct: 170 TLP 172

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A* Length = 281

 Score = 55.7 bits (135), Expect = 2e-09
 Identities = 32/151 (21%), Positives = 58/151 (38%), Gaps = 30/151 (19%)

Query: 110 RMIGRGGYGTVFLGSL--SDNKAI--AIKKSRIVYQS-QIEQCINKVVVLSQINHRNVVG 164
           R IG G +G V  G     +N A+  AIK  +        E+ + + + + Q +H ++V 
Sbjct: 21  RCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVK 80

Query: 165 LLGCCLETEVPLLVNEFVKL-----------PTISWEVRIRIAAETA------EDIKSI- 206
           L+G   E     ++ E   L            ++     I  A + +      E  + + 
Sbjct: 81  LIGVITE-NPVWIIMELCTLGELRSFLQVRKYSLDLASLILYAYQLSTALAYLESKRFVH 139

Query: 207 ------NILLDDNYTTKVCDFGASKLVPIDE 231
                 N+L+  N   K+ DFG S+ +    
Sbjct: 140 RDIAARNVLVSSNDCVKLGDFGLSRYMEDST 170

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A Length = 370

 Score = 56.2 bits (136), Expect = 2e-09
 Identities = 35/236 (14%), Positives = 79/236 (33%), Gaps = 59/236 (25%)

Query: 49  LKKRNLIGLEGRKNGTQRKFFQQNGGYLLQLQLSKRSGSSDTAKIFTAGELKIAT----- 103
           L KR  I L  +   +       N    L    ++ S ++DT  +    E ++       
Sbjct: 20  LTKR--IPLRRQVTVSAESSSSMNSNTPLVRITTRLSSTADTPMLAGVSEYELPEDPKWE 77

Query: 104 ---NNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIV---------YQSQIEQCINKV 151
              +     + +G G +G V +           K++  V          +  +   ++++
Sbjct: 78  FPRDKLTLGKPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEM 137

Query: 152 VVLSQI-NHRNVVGLLGCCLETEVPLLVNEFVK--------------------------L 184
            ++  I  H+N++ LLG C +     ++ E+                             
Sbjct: 138 EMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPE 197

Query: 185 PTISWEVRIRIAAETA------EDIKSI-------NILLDDNYTTKVCDFGASKLV 227
             ++++  +    + A         K I       N+L+ +N   K+ DFG ++ +
Sbjct: 198 EQMTFKDLVSCTYQLARGMEYLASQKCIHRDLAARNVLVTENNVMKIADFGLARDI 253

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A* Length = 289

 Score = 55.8 bits (135), Expect = 2e-09
 Identities = 31/159 (19%), Positives = 60/159 (37%), Gaps = 40/159 (25%)

Query: 109 DRMIGRGGYGTVFLGSL--------SDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHR 160
           +  +G+G +  +F G               + +K     +++  E       ++S+++H+
Sbjct: 13  NESLGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKAHRNYSESFFEAASMMSKLSHK 72

Query: 161 NVVGLLGCCLETEVPLLVNEFVKL-----------PTISWEVRIRIAAETA------EDI 203
           ++V   G C+  +  +LV EFVK              I+   ++ +A + A      E+ 
Sbjct: 73  HLVLNYGVCVCGDENILVQEFVKFGSLDTYLKKNKNCINILWKLEVAKQLAAAMHFLEEN 132

Query: 204 KSI-------NILLD--------DNYTTKVCDFGASKLV 227
             I       NILL         +    K+ D G S  V
Sbjct: 133 TLIHGNVCAKNILLIREEDRKTGNPPFIKLSDPGISITV 171

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A* Length = 323

 Score = 55.8 bits (135), Expect = 2e-09
 Identities = 38/183 (20%), Positives = 60/183 (32%), Gaps = 51/183 (27%)

Query: 105 NYAYDRMIGRGGYGTVFLG-SLSDNKAIAIKKSRIVYQSQIEQCINKV----VVLSQINH 159
           ++   + +G G YG V L  +    +A+A+K   IV   +   C   +     +   +NH
Sbjct: 8   DWDLVQTLGEGAYGEVQLAVNRVTEEAVAVK---IVDMKRAVDCPENIKKEICINKMLNH 64

Query: 160 RNVVGLLGCCLETEVPL-LVNEFVKLPTISWEV------RIRIAAETAE----------- 201
            NVV   G          L  E+        E+       I +    A+           
Sbjct: 65  ENVVKFYGH-RREGNIQYLFLEYCS----GGELFDRIEPDIGMPEPDAQRFFHQLMAGVV 119

Query: 202 ----------DIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTLGYYLHTSQG 251
                     DIK  N+LLD+    K+ DFG + +                   L+   G
Sbjct: 120 YLHGIGITHRDIKPENLLLDERDNLKISDFGLATV----------FRYNNRERLLNKMCG 169

Query: 252 TLN 254
           TL 
Sbjct: 170 TLP 172

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A* Length = 676

 Score = 56.2 bits (135), Expect = 3e-09
 Identities = 33/182 (18%), Positives = 61/182 (33%), Gaps = 49/182 (26%)

Query: 105 NYAYDRMIGRGGYGTVFLGS-LSDNKAIAIKK-SRIVYQSQIEQCINKVVVLSQINHRNV 162
            +     +G GG+G V         + +AIK+  + +     E+   ++ ++ ++NH NV
Sbjct: 15  PWEMKERLGTGGFGYVLRWIHQDTGEQVAIKQCRQELSPKNRERWCLEIQIMKKLNHPNV 74

Query: 163 VGLLGCCLETE-------VPLLVNEFVKLPTISWEVRIRIAA----------ETAE---- 201
           V       +         +PLL  E+ +      ++R  +                    
Sbjct: 75  VSAR-EVPDGLQKLAPNDLPLLAMEYCE----GGDLRKYLNQFENCCGLKEGPIRTLLSD 129

Query: 202 ----------------DIKSINILLD---DNYTTKVCDFGASKLVPIDETQLSTMVQGTL 242
                           D+K  NI+L         K+ D G +K +       +  V GTL
Sbjct: 130 ISSALRYLHENRIIHRDLKPENIVLQPGPQRLIHKIIDLGYAKELD-QGELCTEFV-GTL 187

Query: 243 GY 244
            Y
Sbjct: 188 QY 189

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X* Length = 348

 Score = 55.5 bits (134), Expect = 3e-09
 Identities = 39/214 (18%), Positives = 74/214 (34%), Gaps = 57/214 (26%)

Query: 81  LSKRSGSSDTAKIFTAGELKIATNNYAYDRMIGRGGYGTVFLGSLSDNKAIAIK---KSR 137
           LS  S      K     +  I  N+Y   R + +G +  + L    DNK  A+K   KS 
Sbjct: 10  LSNYSNLIYLNKYVKEKDKYI--NDYRIIRTLNQGKFNKIILCE-KDNKFYALKKYEKSL 66

Query: 138 IV--------------YQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPL-LVNEFV 182
           +                +S+ +   N++ +++ I +   +   G  +     + ++ E++
Sbjct: 67  LEKKRDFTKSNNDKISIKSKYDDFKNELQIITDIKNEYCLTCEGI-ITNYDEVYIIYEYM 125

Query: 183 K------------------LPTISWEVRIRIAAETAE--------------DIKSINILL 210
           +                     I  +V   I                    D+K  NIL+
Sbjct: 126 ENDSILKFDEYFFVLDKNYTCFIPIQVIKCIIKSVLNSFSYIHNEKNICHRDVKPSNILM 185

Query: 211 DDNYTTKVCDFGASKLVPIDETQLSTMVQGTLGY 244
           D N   K+ DFG S+ +   + ++     GT  +
Sbjct: 186 DKNGRVKLSDFGESEYMV--DKKIKGSR-GTYEF 216

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} Length = 413

 Score = 55.4 bits (133), Expect = 4e-09
 Identities = 12/196 (6%), Positives = 40/196 (20%), Gaps = 60/196 (30%)

Query: 106 YAYDRMIGRGGYGTVFLG-SLSDNKAIAIK-------------------------KSRIV 139
                ++G+               ++  +                             I 
Sbjct: 80  LVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIK 139

Query: 140 YQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEFVKLP-------------- 185
            Q Q +  +  +     +       ++   L+     +++ F   P              
Sbjct: 140 NQKQAKVHLRFIFPFDLVKDPQKKKMIRVRLDERDMWVLSRFFLYPRMQSNLQTFGEVLL 199

Query: 186 -------TISWEVRIRIAAETAE-------------DIKSINILLDDNYTTKVCDFGASK 225
                  ++    R+++  +                 ++ ++I+LD      +  F    
Sbjct: 200 SHSSTHKSLVHHARLQLTLQVIRLLASLHHYGLVHTYLRPVDIVLDQRGGVFLTGFEHLV 259

Query: 226 LVPIDETQLSTMVQGT 241
                           
Sbjct: 260 RDGASAVSPIGRGFAP 275

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens} Length = 326

 Score = 55.1 bits (133), Expect = 4e-09
 Identities = 42/165 (25%), Positives = 64/165 (38%), Gaps = 39/165 (23%)

Query: 112 IGRGGYGTVFLG-SLSDNKAIAIKKSRIVYQSQIEQCINK-VVVLSQI-NHRNVVGLLGC 168
           +G G YG V+ G  +   +  AIK   +      E+ I + + +L +  +HRN+    G 
Sbjct: 32  VGNGTYGQVYKGRHVKTGQLAAIKV--MDVTGDEEEEIKQEINMLKKYSHHRNIATYYGA 89

Query: 169 CLETEVPL------LVNEF------------VKLPTISWEVRIR-IAAETAE-------- 201
            ++   P       LV EF             K  T+  E  I  I  E           
Sbjct: 90  FIKKNPPGMDDQLWLVMEFCGAGSVTDLIKNTKGNTLK-EEWIAYICREILRGLSHLHQH 148

Query: 202 -----DIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGT 241
                DIK  N+LL +N   K+ DFG S  +     + +T + GT
Sbjct: 149 KVIHRDIKGQNVLLTENAEVKLVDFGVSAQLDRTVGRRNTFI-GT 192

>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ... Length = 350

 Score = 55.0 bits (133), Expect = 4e-09
 Identities = 36/161 (22%), Positives = 61/161 (37%), Gaps = 37/161 (22%)

Query: 100 KIATNNYAYDRMIGRGGYGTVFLGSLSDNKAI-AIK---KSRIVYQSQIEQCINKVVVLS 155
               + +   + +G G +G V L    ++    A+K   K ++V   QIE  +N+  +L 
Sbjct: 37  TAQLDQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQ 96

Query: 156 QINHRNVVGLLGCCLETEVPL-LVNEFV-------------KLPTISWEVRIRI-AAETA 200
            +N   +V L     +    L +V E+V             +      E   R  AA+  
Sbjct: 97  AVNFPFLVKLEFSF-KDNSNLYMVMEYVAGGEMFSHLRRIGRFS----EPHARFYAAQIV 151

Query: 201 E-------------DIKSINILLDDNYTTKVCDFGASKLVP 228
                         D+K  N+L+D     +V DFG +K V 
Sbjct: 152 LTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVK 192

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens} Length = 382

 Score = 55.1 bits (133), Expect = 5e-09
 Identities = 26/169 (15%), Positives = 56/169 (33%), Gaps = 49/169 (28%)

Query: 108 YDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIV---------YQSQIEQCINKVVVLSQI- 157
             + +G G +G V L            +   V          +  +   I+++ ++  I 
Sbjct: 73  LGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIG 132

Query: 158 NHRNVVGLLGCCLETEVPLLVNEFVK--------------------------LPTISWEV 191
            H+N++ LLG C +     ++ E+                               +S + 
Sbjct: 133 KHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKD 192

Query: 192 RIRIAAETA------EDIKSI-------NILLDDNYTTKVCDFGASKLV 227
            +  A + A         K I       N+L+ ++   K+ DFG ++ +
Sbjct: 193 LVSCAYQVARGMEYLASKKCIHRDLAARNVLVTEDNVMKIADFGLARDI 241

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens} Length = 432

 Score = 55.2 bits (133), Expect = 5e-09
 Identities = 31/179 (17%), Positives = 59/179 (32%), Gaps = 34/179 (18%)

Query: 97  GELKIATNNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQ 156
             + +   ++    ++G G  GT+    + DN+ +A+K    +          +V +L +
Sbjct: 17  SVVIVGKISFCPKDVLGHGAEGTIVYRGMFDNRDVAVK---RILPECFSFADREVQLLRE 73

Query: 157 IN-HRNVVGLLGCCLETEVPLLVNEFV----------KLPTISWEVRIRIAAETAE---- 201
            + H NV+       + +   +  E            K         I +  +T      
Sbjct: 74  SDEHPNVIRYFCTEKDRQFQYIAIELCAATLQEYVEQKDFAHLGLEPITLLQQTTSGLAH 133

Query: 202 ---------DIKSINILL-----DDNYTTKVCDFGASKLVPIDETQLSTM--VQGTLGY 244
                    D+K  NIL+            + DFG  K + +     S    V GT G+
Sbjct: 134 LHSLNIVHRDLKPHNILISMPNAHGKIKAMISDFGLCKKLAVGRHSFSRRSGVPGTEGW 192

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens} Length = 444

 Score = 54.6 bits (132), Expect = 8e-09
 Identities = 30/176 (17%), Positives = 55/176 (31%), Gaps = 40/176 (22%)

Query: 103 TNNYAYDRMIGRGGYGTVFLGS-LSDNKAIAIK--KSRIVYQSQIEQCINKVVVLSQINH 159
           T  Y     +G+G +  V     +   +  A     ++ +     ++   +  +   + H
Sbjct: 10  TEEYQLFEELGKGAFSVVRRCVKVLAGQEYAAMIINTKKLSARDHQKLEREARICRLLKH 69

Query: 160 RNVVGLLGCCLETEVPL-LVNEFVKLPTISWEVRIRIAA-------ETAEDIKSI----- 206
            N+V L       E    L+ + V       E+   I A       + +  I+ I     
Sbjct: 70  PNIVRLHDSI-SEEGHHYLIFDLVT----GGELFEDIVAREYYSEADASHCIQQILEAVL 124

Query: 207 ---------------NILL---DDNYTTKVCDFGASKLVPIDETQLSTMVQGTLGY 244
                          N+LL         K+ DFG +  V  ++        GT GY
Sbjct: 125 HCHQMGVVHRNLKPENLLLASKLKGAAVKLADFGLAIEVEGEQQAWFGFA-GTPGY 179

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7 Length = 343

 Score = 54.2 bits (131), Expect = 8e-09
 Identities = 36/191 (18%), Positives = 65/191 (34%), Gaps = 68/191 (35%)

Query: 98  ELKIATNNYAYDRMIGRGGYGTVFLGSLSD------NKAIAIK--------KSRIVYQSQ 143
            L+   NN  Y R IG G +G VF               +A+K          +  +Q +
Sbjct: 41  SLEYPRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQRE 100

Query: 144 IEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEFVK-------------------- 183
                    ++++ ++ N+V LLG C   +   L+ E++                     
Sbjct: 101 AA-------LMAEFDNPNIVKLLGVCAVGKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLS 153

Query: 184 --------------LPTISWEVRIRIAAETA------EDIKSI-------NILLDDNYTT 216
                          P +S   ++ IA + A       + K +       N L+ +N   
Sbjct: 154 HSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSERKFVHRDLATRNCLVGENMVV 213

Query: 217 KVCDFGASKLV 227
           K+ DFG S+ +
Sbjct: 214 KIADFGLSRNI 224

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A* Length = 486

 Score = 54.7 bits (132), Expect = 8e-09
 Identities = 35/178 (19%), Positives = 60/178 (33%), Gaps = 45/178 (25%)

Query: 103 TNNYAYDRMIGRGGYGTVFLG-SLSDNKAIAIK---KSRIVYQSQIEQCINKVVVLSQIN 158
              Y    M+G+G +G V         +  A+K   K+           + +V +L +++
Sbjct: 21  AERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAK-NKDTSTILREVELLKKLD 79

Query: 159 HRNVVGLLGCCLETEVPL-LVNEFVK---LPTISWEVRI--------RIAAETAE----- 201
           H N++ L     E      +V E      L    ++  I          AA   +     
Sbjct: 80  HPNIMKLFEIL-EDSSSFYIVGELYTGGEL----FD-EIIKRKRFSEHDAARIIKQVFSG 133

Query: 202 ------------DIKSINILL---DDNYTTKVCDFGASKLVPIDETQLSTMVQGTLGY 244
                       D+K  NILL   + +   K+ DFG S     +   +   + GT  Y
Sbjct: 134 ITYMHKHNIVHRDLKPENILLESKEKDCDIKIIDFGLSTCFQQNTK-MKDRI-GTAYY 189

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens} Length = 312

 Score = 54.2 bits (131), Expect = 8e-09
 Identities = 41/191 (21%), Positives = 67/191 (35%), Gaps = 60/191 (31%)

Query: 105 NYAYDRMIGRGGYGTVFLGS-LSDNKAIAIK---KSRIVYQSQIEQCIN---KVVVLSQI 157
            Y    ++G+GG+GTVF G  L+D   +AIK   ++R++  S +   +    +V +L ++
Sbjct: 32  EYRLGPLLGKGGFGTVFAGHRLTDRLQVAIKVIPRNRVLGWSPLSDSVTCPLEVALLWKV 91

Query: 158 N----HRNVVGLL-------GCCLETEVPLLVNE-FVKLPTISWEVRIRIAAETAE---- 201
                H  V+ LL       G  L  E PL   + F  +       +  +    +     
Sbjct: 92  GAGGGHPGVIRLLDWFETQEGFMLVLERPLPAQDLFDYI-----TEKGPLGEGPSRCFFG 146

Query: 202 -----------------DIKSINILLD-DNYTTKVCDFGASKLVPIDETQLSTMVQGTLG 243
                            DIK  NIL+D      K+ DFG              ++     
Sbjct: 147 QVVAAIQHCHSRGVVHRDIKDENILIDLRRGCAKLIDFG-----------SGALLHDEP- 194

Query: 244 YYLHTSQGTLN 254
                  GT  
Sbjct: 195 --YTDFDGTRV 203

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A* Length = 494

 Score = 54.3 bits (131), Expect = 9e-09
 Identities = 38/172 (22%), Positives = 63/172 (36%), Gaps = 33/172 (19%)

Query: 103 TNNYAYDRMIGRGGYGTVFLG-SLSDNKAIAIK---KSRIVYQSQIEQCINKVVVLSQIN 158
           +  Y   + +G G YG V L      +   AIK   K+ +   S   + + +V VL  ++
Sbjct: 36  SEMYQRVKKLGSGAYGEVLLCRDKVTHVERAIKIIRKTSVS-TSSNSKLLEEVAVLKLLD 94

Query: 159 HRNVVGLLGCCLETEVPLLVNEFVK----LPTISWEVRI--RIAAETAE----------- 201
           H N++ L     +     LV E  K       I   ++     AA   +           
Sbjct: 95  HPNIMKLYDFFEDKRNYYLVMECYKGGELFDEIIHRMKFNEVDAAVIIKQVLSGVTYLHK 154

Query: 202 ------DIKSINILL---DDNYTTKVCDFGASKLVPIDETQLSTMVQGTLGY 244
                 D+K  N+LL   + +   K+ DFG S +   +  +      GT  Y
Sbjct: 155 HNIVHRDLKPENLLLESKEKDALIKIVDFGLSAV--FENQKKMKERLGTAYY 204

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A Length = 325

 Score = 53.8 bits (130), Expect = 1e-08
 Identities = 38/172 (22%), Positives = 57/172 (33%), Gaps = 42/172 (24%)

Query: 106 YAYDRMIGRGGYGTVFLG-SLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQI-NHRNVV 163
              D+ +G G +           N+A A+K   I+ +        ++  L     H N+V
Sbjct: 13  DLKDKPLGEGSFSICRKCVHKKSNQAFAVK---IISKRMEANTQKEITALKLCEGHPNIV 69

Query: 164 GLLGCCLETEVPLLVNEFVK---LPTISWEVRI--------RIAAETAE----------- 201
            L     +     LV E +    L       RI          A+               
Sbjct: 70  KLHEVFHDQLHTFLVMELLNGGELFE-----RIKKKKHFSETEASYIMRKLVSAVSHMHD 124

Query: 202 ------DIKSINILL---DDNYTTKVCDFGASKLVPIDETQLSTMVQGTLGY 244
                 D+K  N+L    +DN   K+ DFG ++L P D   L T    TL Y
Sbjct: 125 VGVVHRDLKPENLLFTDENDNLEIKIIDFGFARLKPPDNQPLKTPC-FTLHY 175

>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7 Length = 318

 Score = 53.3 bits (129), Expect = 1e-08
 Identities = 37/161 (22%), Positives = 65/161 (40%), Gaps = 37/161 (22%)

Query: 100 KIATNNYAYDRMIGRGGYGTVFLGSLSDNKAI-AIK---KSRIVYQSQIEQCINKVVVLS 155
           K +  ++   R +G G +G V L     N    A+K   K  +V   Q+E   ++ ++LS
Sbjct: 2   KYSLQDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLS 61

Query: 156 QINHRNVVGLLGCCLETEVPL-LVNEFV-------------KLPTISWEVRIRI-AAETA 200
            + H  ++ + G   +    + ++ +++             + P        +  AAE  
Sbjct: 62  IVTHPFIIRMWGTF-QDAQQIFMIMDYIEGGELFSLLRKSQRFP----NPVAKFYAAEVC 116

Query: 201 E-------------DIKSINILLDDNYTTKVCDFGASKLVP 228
                         D+K  NILLD N   K+ DFG +K VP
Sbjct: 117 LALEYLHSKDIIYRDLKPENILLDKNGHIKITDFGFAKYVP 157

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A* Length = 287

 Score = 53.4 bits (129), Expect = 1e-08
 Identities = 35/172 (20%), Positives = 60/172 (34%), Gaps = 33/172 (19%)

Query: 103 TNNYAYDRMIGRGGYGTVFLGS-LSDNKAIAIK---KSRIVYQSQIEQCINKVVVLSQIN 158
              Y    M+G+G +G V         +  A+K   K+           + +V +L +++
Sbjct: 21  AERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAK-NKDTSTILREVELLKKLD 79

Query: 159 HRNVVGLLGCCLETEVPLLVNEFVK----LPTISWEVRI--RIAAETAE----------- 201
           H N++ L     ++    +V E          I    R     AA   +           
Sbjct: 80  HPNIMKLFEILEDSSSFYIVGELYTGGELFDEIIKRKRFSEHDAARIIKQVFSGITYMHK 139

Query: 202 ------DIKSINILL---DDNYTTKVCDFGASKLVPIDETQLSTMVQGTLGY 244
                 D+K  NILL   + +   K+ DFG S       T++   + GT  Y
Sbjct: 140 HNIVHRDLKPENILLESKEKDCDIKIIDFGLSTCFQ-QNTKMKDRI-GTAYY 189

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A* Length = 333

 Score = 53.4 bits (129), Expect = 2e-08
 Identities = 31/165 (18%), Positives = 58/165 (35%), Gaps = 47/165 (28%)

Query: 104 NNYAYDRMIGRGGYGTVFLGSLSD------NKAIAIK--KSRIVYQSQIEQCINKVVVLS 155
           NN  + + +G G +G V   +            +A+K  KS      +    ++++ ++S
Sbjct: 46  NNLQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEA-LMSELKIMS 104

Query: 156 QI-NHRNVVGLLGCCLETEVPLLVNEFVK------------------------LPTISWE 190
            +  H N+V LLG C      L++ E+                            T S  
Sbjct: 105 HLGQHENIVNLLGACTHGGPVLVITEYCCYGDLLNFLRRKSRVLETDPAFAIANSTASTR 164

Query: 191 VRIRIAAETA------EDIKSI-------NILLDDNYTTKVCDFG 222
             +  +++ A           I       N+LL + +  K+ DFG
Sbjct: 165 DLLHFSSQVAQGMAFLASKNCIHRDVAARNVLLTNGHVAKIGDFG 209

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A Length = 419

 Score = 53.5 bits (129), Expect = 2e-08
 Identities = 35/181 (19%), Positives = 66/181 (36%), Gaps = 46/181 (25%)

Query: 103 TNNYAYDRMIGRGGYGTVFLG-SLSDNKAIAIK---KSRIVYQSQIEQCINKVV-----V 153
            + Y   + +G G  G V L       K +AI+   K +    S  E      V     +
Sbjct: 134 RDEYIMSKTLGSGACGEVKLAFERKTCKKVAIRIISKRKFAIGSAREADPALNVETEIEI 193

Query: 154 LSQINHRNVVGLLGCCLETEVPLLVNEFVKLPTISWEVRIRIAA-------ETAE----- 201
           L ++NH  ++ +     + E   +V E ++      E+  ++                  
Sbjct: 194 LKKLNHPCIIKIKNFF-DAEDYYIVLELME----GGELFDKVVGNKRLKEATCKLYFYQM 248

Query: 202 ---------------DIKSINILL---DDNYTTKVCDFGASKLVPIDETQLSTMVQGTLG 243
                          D+K  N+LL   +++   K+ DFG SK++  + + + T+  GT  
Sbjct: 249 LLAVQYLHENGIIHRDLKPENVLLSSQEEDCLIKITDFGHSKILG-ETSLMRTLC-GTPT 306

Query: 244 Y 244
           Y
Sbjct: 307 Y 307

>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ... Length = 337

 Score = 53.4 bits (129), Expect = 2e-08
 Identities = 39/177 (22%), Positives = 63/177 (35%), Gaps = 38/177 (21%)

Query: 100 KIATNNYAYDRMIGRGGYGTVFLGSLSDNKAI----AIKKSRIVYQSQIEQCINKVVVLS 155
           K+  N++ Y +++G+G +G V L              ++K  I+ + ++   + +  VL 
Sbjct: 1   KVTMNDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQ 60

Query: 156 QINHRNVVGLLGCCLETEVPL-LVNEFV-------------KLPTISWEVRIRI-AAETA 200
              H  +  L     +T   L  V E+                     E R R   AE  
Sbjct: 61  NTRHPFLTALK-YAFQTHDRLCFVMEYANGGELFFHLSRERVFT----EERARFYGAEIV 115

Query: 201 -------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTLGY 244
                         DIK  N++LD +   K+ DFG  K    D   + T   GT  Y
Sbjct: 116 SALEYLHSRDVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGATMKTFC-GTPEY 171

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp} Length = 294

 Score = 53.0 bits (128), Expect = 2e-08
 Identities = 45/167 (26%), Positives = 75/167 (44%), Gaps = 29/167 (17%)

Query: 106 YAYDRMIGRGGYGTVFLGS-LSDNKAIAIKKSRIVYQSQ---IEQCINKVVVLSQINHRN 161
           Y     +G GG  TV+L      N  +AIK   I  + +   +++   +V   SQ++H+N
Sbjct: 13  YKIVDKLGGGGMSTVYLAEDTILNIKVAIKAIFIPPREKEETLKRFEREVHNSSQLSHQN 72

Query: 162 VVGLLGCCLETEVPLLVNEFVKLPT----------ISWEVRIRIAAETAE---------- 201
           +V ++    E +   LV E+++ PT          +S +  I    +  +          
Sbjct: 73  IVSMIDVDEEDDCYYLVMEYIEGPTLSEYIESHGPLSVDTAINFTNQILDGIKHAHDMRI 132

Query: 202 ---DIKSINILLDDNYTTKVCDFGASKLVPIDETQLST-MVQGTLGY 244
              DIK  NIL+D N T K+ DFG +K +  + +   T  V GT+ Y
Sbjct: 133 VHRDIKPQNILIDSNKTLKIFDFGIAKALS-ETSLTQTNHVLGTVQY 178

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A* Length = 656

 Score = 53.7 bits (129), Expect = 2e-08
 Identities = 34/148 (22%), Positives = 60/148 (40%), Gaps = 30/148 (20%)

Query: 109 DRMIGRGGYGTVFLGSL--SDNKAI--AIKKSRIVY-QSQIEQCINKVVVLSQINHRNVV 163
            R IG G +G V  G     +N A+  AIK  +     S  E+ + + + + Q +H ++V
Sbjct: 395 GRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIV 454

Query: 164 GLLGCCLETEVPLLVNEFVKL-----------PTISWEVRIRIAAETA------EDIKSI 206
            L+G   E  V  ++ E   L            ++     I  A + +      E  + +
Sbjct: 455 KLIGVITENPV-WIIMELCTLGELRSFLQVRKFSLDLASLILYAYQLSTALAYLESKRFV 513

Query: 207 -------NILLDDNYTTKVCDFGASKLV 227
                  N+L+  N   K+ DFG S+ +
Sbjct: 514 HRDIAARNVLVSSNDCVKLGDFGLSRYM 541

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis} Length = 394

 Score = 53.1 bits (128), Expect = 2e-08
 Identities = 39/161 (24%), Positives = 63/161 (39%), Gaps = 40/161 (24%)

Query: 103 TNNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINK-VVVLSQINHRN 161
              Y   ++IG G +G VF   L ++  +AIKK       Q ++  N+ + ++  + H N
Sbjct: 39  EIAYTNCKVIGNGSFGVVFQAKLVESDEVAIKKVL-----QDKRFKNRELQIMRIVKHPN 93

Query: 162 VVGLLGCCLET-----EVPL-LVNEFV-----KLPTISWEVRIRIAAETAE--------- 201
           VV L            EV L LV E+V     +      +++  +     +         
Sbjct: 94  VVDLKAFFYSNGDKKDEVFLNLVLEYVPETVYRASRHYAKLKQTMPMLLIKLYMYQLLRS 153

Query: 202 ------------DIKSINILLD-DNYTTKVCDFG-ASKLVP 228
                       DIK  N+LLD  +   K+ DFG A  L+ 
Sbjct: 154 LAYIHSIGICHRDIKPQNLLLDPPSGVLKLIDFGSAKILIA 194

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A Length = 365

 Score = 52.8 bits (127), Expect = 3e-08
 Identities = 36/180 (20%), Positives = 63/180 (35%), Gaps = 45/180 (25%)

Query: 103 TNNYAYDRMIGRGGYGTVFLGS-LSDNKAIAIK---KSRI-----VYQSQIEQCINKVVV 153
              Y    +IGRG    V      +     A+K    +         +   E    +  +
Sbjct: 93  YQKYDPKDVIGRGVSSVVRRCVHRATGHEFAVKIMEVTAERLSPEQLEEVREATRRETHI 152

Query: 154 LSQI-NHRNVVGLLGCCLETEVPL-LVNEFVKLPTISWEVRIRIAA-------ETAEDIK 204
           L Q+  H +++ L+    E+   + LV + ++      E+   +         ET   ++
Sbjct: 153 LRQVAGHPHIITLIDSY-ESSSFMFLVFDLMR----KGELFDYLTEKVALSEKETRSIMR 207

Query: 205 SI--------------------NILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTLGY 244
           S+                    NILLDDN   ++ DFG S  +     +L  +  GT GY
Sbjct: 208 SLLEAVSFLHANNIVHRDLKPENILLDDNMQIRLSDFGFSCHLE-PGEKLRELC-GTPGY 265

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A* Length = 284

 Score = 51.8 bits (125), Expect = 4e-08
 Identities = 33/177 (18%), Positives = 57/177 (32%), Gaps = 43/177 (24%)

Query: 103 TNNYAYDRMIGRGGYGTVFLGS-LSDNKAIAIK---KSRIVYQSQIEQCINKVVVLSQIN 158
           ++NY     +G+G +  V      +     A K     ++      ++   +  +  ++ 
Sbjct: 5   SDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLS-ARDFQKLEREARICRKLQ 63

Query: 159 HRNVVGLLGCCLETEVPL-LVNEFVKLPTISWEVRIRIAA-------ETAEDIKSI---- 206
           H N+V L     + E    LV + V       E+   I A       + +  I+ I    
Sbjct: 64  HPNIVRLHDSI-QEESFHYLVFDLVT----GGELFEDIVAREFYSEADASHCIQQILESI 118

Query: 207 ----------------NILL---DDNYTTKVCDFGASKLVPIDETQLSTMVQGTLGY 244
                           N+LL         K+ DFG +  V  D         GT GY
Sbjct: 119 AYCHSNGIVHRNLKPENLLLASKAKGAAVKLADFGLAIEVN-DSEAWHGFA-GTPGY 173

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens} Length = 335

 Score = 52.0 bits (125), Expect = 4e-08
 Identities = 36/184 (19%), Positives = 68/184 (36%), Gaps = 48/184 (26%)

Query: 105 NYAYDRMIGRGGYGTVFLGS-LSDNKAIAIK---KSRIVYQSQIEQCINK-----VVVLS 155
            Y+    +G G +G V+       NK + +K   K +++    IE          + +LS
Sbjct: 25  KYSTMSPLGSGAFGFVWTAVDKEKNKEVVVKFIKKEKVLEDCWIEDPKLGKVTLEIAILS 84

Query: 156 QINHRNVVGLLGCCLETEVPL-LVNEF-----------VKLPTISWEVRIRIAAETAE-- 201
           ++ H N++ +L    E +    LV E             + P +   +   I  +     
Sbjct: 85  RVEHANIIKVLD-IFENQGFFQLVMEKHGSGLDLFAFIDRHPRLDEPLASYIFRQLVSAV 143

Query: 202 -----------DIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTLGYYLHTSQ 250
                      DIK  NI++ +++T K+ DFG            +  ++   G   +T  
Sbjct: 144 GYLRLKDIIHRDIKDENIVIAEDFTIKLIDFG-----------SAAYLER--GKLFYTFC 190

Query: 251 GTLN 254
           GT+ 
Sbjct: 191 GTIE 194

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A* Length = 313

 Score = 51.9 bits (125), Expect = 5e-08
 Identities = 34/176 (19%), Positives = 57/176 (32%), Gaps = 63/176 (35%)

Query: 108 YDRMIGRGGYGTVFLGSLSD------NKAIAIK--------KSRIVYQSQIEQCINKVVV 153
           + + +G G +G V   +            +A+K          R    S+++       V
Sbjct: 27  FGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELK-------V 79

Query: 154 LSQI-NHRNVVGLLGCCLETEVPLLVNEFVK----------------------------L 184
           LS + NH N+V LLG C      L++ E+                               
Sbjct: 80  LSYLGNHMNIVNLLGACTIGGPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDE 139

Query: 185 PTISWEVRIRIAAETA------EDIKSI-------NILLDDNYTTKVCDFGASKLV 227
             +  E  +  + + A           I       NILL     TK+CDFG ++ +
Sbjct: 140 LALDLEDLLSFSYQVAKGMAFLASKNCIHRDLAARNILLTHGRITKICDFGLARDI 195

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ... Length = 320

 Score = 52.0 bits (125), Expect = 5e-08
 Identities = 44/191 (23%), Positives = 68/191 (35%), Gaps = 62/191 (32%)

Query: 105 NYAYDRMIGRGGYGTVFLGS-LSDNKAIAIK---KSRIVYQSQI---EQCINKVVVLSQI 157
            Y    ++G GG+G+V+ G  +SDN  +AIK   K RI    ++    +   +VV+L ++
Sbjct: 44  QYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKV 103

Query: 158 NHR--NVVGLLGCCLETEVPL-LVNEFV--------------KLPTISWEVRIR------ 194
           +     V+ LL    E      L+ E                 L     E   R      
Sbjct: 104 SSGFSGVIRLLD-WFERPDSFVLILERPEPVQDLFDFITERGALQ----EELARSFFWQV 158

Query: 195 IAAETAE----------DIKSINILLDDNY-TTKVCDFGASKLVPIDETQLSTMVQGTLG 243
           + A              DIK  NIL+D N    K+ DFG              +++ T+ 
Sbjct: 159 LEA--VRHCHNCGVLHRDIKDENILIDLNRGELKLIDFG-----------SGALLKDTV- 204

Query: 244 YYLHTSQGTLN 254
                  GT  
Sbjct: 205 --YTDFDGTRV 213

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A* Length = 298

 Score = 51.9 bits (125), Expect = 5e-08
 Identities = 39/181 (21%), Positives = 65/181 (35%), Gaps = 46/181 (25%)

Query: 103 TNNYAYDRMIGRGGYGTVFLGS-LSDNKAIAIK---KSRIVYQSQI------EQCINKVV 152
             NY    ++GRG    V         K  A+K    +     S        E  + +V 
Sbjct: 16  YENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVD 75

Query: 153 VLSQIN-HRNVVGLLGCCLETEVPL-LVNEFVKLPTISWEVRIRIAA-------ETAEDI 203
           +L +++ H N++ L     ET     LV + +K      E+   +         ET + +
Sbjct: 76  ILRKVSGHPNIIQLKDTY-ETNTFFFLVFDLMK----KGELFDYLTEKVTLSEKETRKIM 130

Query: 204 KSI--------------------NILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTLG 243
           +++                    NILLDD+   K+ DFG S  +     +L  +  GT  
Sbjct: 131 RALLEVICALHKLNIVHRDLKPENILLDDDMNIKLTDFGFSCQLD-PGEKLREVC-GTPS 188

Query: 244 Y 244
           Y
Sbjct: 189 Y 189

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii} Length = 285

 Score = 51.5 bits (124), Expect = 5e-08
 Identities = 41/198 (20%), Positives = 65/198 (32%), Gaps = 49/198 (24%)

Query: 82  SKRSGSSDTAKIFTAGELKIATNNYAYDRMIGRGGYGTVFLG-SLSDNKAIAIK---KSR 137
           S R        I          + + + R +G G +G V L    S      IK   K R
Sbjct: 9   SGRENLYFQGTI---------DDLFIFKRKLGSGAFGDVHLVEERSSGLERVIKTINKDR 59

Query: 138 IVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPL-LVNEFVK----LPTISWEVR 192
              Q  +EQ   ++ VL  ++H N++ +     E    + +V E  +    L  I     
Sbjct: 60  S--QVPMEQIEAEIEVLKSLDHPNIIKIFEVF-EDYHNMYIVMETCEGGELLERIVSAQA 116

Query: 193 I------RIAAETAE-----------------DIKSINILL---DDNYTTKVCDFGASKL 226
                     AE  +                 D+K  NIL      +   K+ DFG ++L
Sbjct: 117 RGKALSEGYVAELMKQMMNALAYFHSQHVVHKDLKPENILFQDTSPHSPIKIIDFGLAEL 176

Query: 227 VPIDETQLSTMVQGTLGY 244
               +   +    GT  Y
Sbjct: 177 FK-SDEHSTNAA-GTALY 192

>3zzw_A Tyrosine-protein kinase transmembrane receptor RO; transferase, neurotrophic tyrosine kinase, receptor-related NTRKR2; 2.90A {Homo sapiens} Length = 289

 Score = 51.4 bits (124), Expect = 6e-08
 Identities = 26/164 (15%), Positives = 54/164 (32%), Gaps = 46/164 (28%)

Query: 110 RMIGRGGYGTVFLGSL------SDNKAIAIKKSRIVY-QSQIEQCINKVVVLSQINHRNV 162
             +G   +G V+ G L         +A+AIK  +        E+  ++ ++ +++ H NV
Sbjct: 15  EELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNV 74

Query: 163 VGLLGCCLETEVPLLVNEFVK--------------------------LPTISWEVRIRIA 196
           V LLG   + +   ++  +                               +     + + 
Sbjct: 75  VCLLGVVTKDQPLSMIFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLV 134

Query: 197 AETA------EDIKSI-------NILLDDNYTTKVCDFGASKLV 227
           A+ A           +       N+L+ D    K+ D G  + V
Sbjct: 135 AQIAAGMEYLSSHHVVHKDLATRNVLVYDKLNVKISDLGLFREV 178

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B* Length = 389

 Score = 51.8 bits (124), Expect = 6e-08
 Identities = 23/175 (13%), Positives = 50/175 (28%), Gaps = 39/175 (22%)

Query: 112 IGRG--GYGTVFLG-SLSDNKAIAIKKSRIVYQS--QIEQCINKVVVLSQINHRNVVGLL 166
           IG+G     TV L       + + +++  +   S   +     ++ V    NH N+V   
Sbjct: 33  IGKGFEDLMTVNLARYKPTGEYVTVRRINLEACSNEMVTFLQGELHVSKLFNHPNIVPYR 92

Query: 167 GCCLETEVPLLVNEF-----------VKLPTISWEVRIR-IAAETAE------------- 201
              +      +V  F                   E+ I  I     +             
Sbjct: 93  ATFIADNELWVVTSFMAYGSAKDLICTHFMDGMNELAIAYILQGVLKALDYIHHMGYVHR 152

Query: 202 DIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMV--QGTLGYYLHTSQGTLN 254
            +K+ +IL+  +    +    ++         + +    Q  +  +   S   L 
Sbjct: 153 SVKASHILISVDGKVYLSGLRSN-------LSMISHGQRQRVVHDFPKYSVKVLP 200

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A* Length = 371

 Score = 52.0 bits (124), Expect = 6e-08
 Identities = 17/199 (8%), Positives = 39/199 (19%), Gaps = 63/199 (31%)

Query: 105 NYAYDRMIGRGGYGTVFLG-SLSDNKAIAIK---KSRIVYQSQIEQCINKVVVLSQINHR 160
                  +  G    VFL   +   +  A+K         +S++E+        +++   
Sbjct: 63  KLKLVEPLRVGDRSVVFLVRDVERLEDFALKVFTMGAENSRSELERLHEATFAAARLLGE 122

Query: 161 N------------------------------------------VVGLLGCCLETEVPLLV 178
           +                                          ++      LE     L 
Sbjct: 123 SPEEARDRRRLLLPSDAVAVQSQPPFAQLSPGQDDYAVANYLLLMPAASVDLELLFSTLD 182

Query: 179 NEFVKLPTISWEVRIRIAAETAE-------------DIKSINILLDDNYTTKVCDFGASK 225
             +V            + A+                     N+ +  +    + D  A  
Sbjct: 183 FVYVFRGDEGILALHILTAQLIRLAANLQSKGLVHGHFTPDNLFIMPDGRLMLGDVSALW 242

Query: 226 LVPIDETQLSTMVQGTLGY 244
                           + Y
Sbjct: 243 ----KVGTRGPASSVPVTY 257

>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A* Length = 345

 Score = 51.8 bits (125), Expect = 6e-08
 Identities = 49/168 (29%), Positives = 63/168 (37%), Gaps = 39/168 (23%)

Query: 110 RMIGRGGYGTVFLGSLSDNKAI----AIKKSRIVYQSQIEQCINKVVVLSQI-NHRNVVG 164
           R+IGRG Y  V L  L     I     +KK  +     I+    +  V  Q  NH  +VG
Sbjct: 15  RVIGRGSYAKVLLVRLKKTDRIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVG 74

Query: 165 LLGCCLETEVPL-LVNEFV-------------KLPTISWEVRIRI-AAETA--------- 200
           L   C +TE  L  V E+V             KLP    E   R  +AE +         
Sbjct: 75  LH-SCFQTESRLFFVIEYVNGGDLMFHMQRQRKLP----EEHARFYSAEISLALNYLHER 129

Query: 201 ----EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTLGY 244
                D+K  N+LLD     K+ D+G  K         ST   GT  Y
Sbjct: 130 GIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPGDTTSTFC-GTPNY 176

>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus} Length = 396

 Score = 51.6 bits (124), Expect = 6e-08
 Identities = 49/168 (29%), Positives = 63/168 (37%), Gaps = 39/168 (23%)

Query: 110 RMIGRGGYGTVFLGSLSDNKAI----AIKKSRIVYQSQIEQCINKVVVLSQI-NHRNVVG 164
           R+IGRG Y  V L  L     I     +KK  +     I+    +  V  Q  NH  +VG
Sbjct: 58  RVIGRGSYAKVLLVRLKKTDRIYAMRVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVG 117

Query: 165 LLGCCLETEVPL-LVNEFV-------------KLPTISWEVRIRI-AAETA--------- 200
           L   C +TE  L  V E+V             KLP    E   R  +AE +         
Sbjct: 118 LH-SCFQTESRLFFVIEYVNGGDLMFHMQRQRKLP----EEHARFYSAEISLALNYLHER 172

Query: 201 ----EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTLGY 244
                D+K  N+LLD     K+ D+G  K         ST   GT  Y
Sbjct: 173 GIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPGDTTSTFC-GTPNY 219

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A* Length = 327

 Score = 51.6 bits (124), Expect = 7e-08
 Identities = 39/171 (22%), Positives = 59/171 (34%), Gaps = 35/171 (20%)

Query: 87  SSDTAKIFTAGELKIATNNYAYDRMIGRGGYGTVFLGS-LSDNKAIAIKKSRIVY----Q 141
           SS   KI           +      IGRG YG+V         + +A+K+ R       Q
Sbjct: 5   SSGKLKISPEQHWDFTAEDLKDLGEIGRGAYGSVNKMVHKPSGQIMAVKRIRSTVDEKEQ 64

Query: 142 SQIEQCINKVVVLSQINHRNVVGLLGCCL-ETEV------------PLLVNEFVKLPTIS 188
            Q+   ++  VV+   +   +V   G    E +                   +  L  + 
Sbjct: 65  KQLLMDLD--VVMRSSDCPYIVQFYGALFREGDCWICMELMSTSFDKFYKYVYSVLDDVI 122

Query: 189 WEVRI-RIAAETAE--------------DIKSINILLDDNYTTKVCDFGAS 224
            E  + +I   T +              DIK  NILLD +   K+CDFG S
Sbjct: 123 PEEILGKITLATVKALNHLKENLKIIHRDIKPSNILLDRSGNIKLCDFGIS 173

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A* Length = 277

 Score = 51.1 bits (123), Expect = 7e-08
 Identities = 34/177 (19%), Positives = 58/177 (32%), Gaps = 45/177 (25%)

Query: 103 TNNYAYDRMIGRGGYGTVFLGS-LSDNKAIAIK---KSRIVYQSQIEQCINKVVVLSQIN 158
              Y  +  IGRG +G V +          A K   K  +     +++   ++ ++  ++
Sbjct: 8   NQYYTLENTIGRGSWGEVKIAVQKGTRIRRAAKKIPKYFV---EDVDRFKQEIEIMKSLD 64

Query: 159 HRNVVGLLGCCLETEVPL-LVNEFVKLPTISWEV--RI--------RIAAETAE------ 201
           H N++ L     E    + LV E         E+  R+          AA   +      
Sbjct: 65  HPNIIRLYETF-EDNTDIYLVMELCT----GGELFERVVHKRVFRESDAARIMKDVLSAV 119

Query: 202 -----------DIKSINILL---DDNYTTKVCDFGASKLVPIDETQLSTMVQGTLGY 244
                      D+K  N L      +   K+ DFG +         + T V GT  Y
Sbjct: 120 AYCHKLNVAHRDLKPENFLFLTDSPDSPLKLIDFGLAARFK-PGKMMRTKV-GTPYY 174

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A* Length = 322

 Score = 51.1 bits (123), Expect = 8e-08
 Identities = 36/181 (19%), Positives = 66/181 (36%), Gaps = 46/181 (25%)

Query: 103 TNNYAYDRMIGRGGYGTVFLGS-LSDNKAIAIK---KSRIVYQSQIEQCINKVV-----V 153
            + Y   + +G G  G V L       K +AIK   K +    S  E      V     +
Sbjct: 9   RDEYIMSKTLGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEIEI 68

Query: 154 LSQINHRNVVGLLGCCLETEVPLLVNEFVKLPTISWEVRIRIAA-------ETAE----- 201
           L ++NH  ++ +     + E   +V E ++      E+  ++                  
Sbjct: 69  LKKLNHPCIIKIKNFF-DAEDYYIVLELME----GGELFDKVVGNKRLKEATCKLYFYQM 123

Query: 202 ---------------DIKSINILL---DDNYTTKVCDFGASKLVPIDETQLSTMVQGTLG 243
                          D+K  N+LL   +++   K+ DFG SK++  + + + T+  GT  
Sbjct: 124 LLAVQYLHENGIIHRDLKPENVLLSSQEEDCLIKITDFGHSKILG-ETSLMRTLC-GTPT 181

Query: 244 Y 244
           Y
Sbjct: 182 Y 182

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei} Length = 504

 Score = 51.6 bits (124), Expect = 8e-08
 Identities = 45/187 (24%), Positives = 69/187 (36%), Gaps = 52/187 (27%)

Query: 103 TNNYAYDRMIGRGGYGTVFLG-SLSDNKAIAIK---KSRIV----------YQSQIEQCI 148
             +Y   R +G G YG V L    + +   AIK   KS+             +   E+  
Sbjct: 35  GESYFKVRKLGSGAYGEVLLCKEKNGHSEKAIKVIKKSQFDKGRYSDDNKNIEKFHEEIY 94

Query: 149 NKVVVLSQINHRNVVGLLGCCLETEVPLLVNEFVK---LPTISWEVRI--------RIAA 197
           N++ +L  ++H N++ L     + +   LV EF +   L    +E +I          AA
Sbjct: 95  NEISLLKSLDHPNIIKLFDVFEDKKYFYLVTEFYEGGEL----FE-QIINRHKFDECDAA 149

Query: 198 ETAE-----------------DIKSINILL---DDNYTTKVCDFGASKLVPIDETQLSTM 237
              +                 DIK  NILL   +     K+ DFG S     D  +L   
Sbjct: 150 NIMKQILSGICYLHKHNIVHRDIKPENILLENKNSLLNIKIVDFGLSSFFSKDY-KLRDR 208

Query: 238 VQGTLGY 244
           + GT  Y
Sbjct: 209 L-GTAYY 214

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A Length = 304

 Score = 51.0 bits (123), Expect = 9e-08
 Identities = 42/177 (23%), Positives = 66/177 (37%), Gaps = 46/177 (25%)

Query: 103 TNNYAYDRMIGRGGYGTVFLGS-LSDNKAIAIK---KSRIVYQSQIEQCINKVVVLSQIN 158
              + +  ++G G +  VFL       K  A+K   KS     S +E   N++ VL +I 
Sbjct: 8   RKTFIFMEVLGSGAFSEVFLVKQRLTGKLFALKCIKKSPAFRDSSLE---NEIAVLKKIK 64

Query: 159 HRNVVGLLGCCLETEVPL-LVNEFVKLPTISWEVRIRIAA-------ETAEDIKSI---- 206
           H N+V L     E+     LV + V       E+  RI         + +  I+ +    
Sbjct: 65  HENIVTLEDIY-ESTTHYYLVMQLVS----GGELFDRILERGVYTEKDASLVIQQVLSAV 119

Query: 207 ----------------NILL---DDNYTTKVCDFGASKLVPIDETQLSTMVQGTLGY 244
                           N+L    ++N    + DFG SK+       +ST   GT GY
Sbjct: 120 KYLHENGIVHRDLKPENLLYLTPEENSKIMITDFGLSKM--EQNGIMSTAC-GTPGY 173

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A* Length = 276

 Score = 50.7 bits (122), Expect = 1e-07
 Identities = 38/182 (20%), Positives = 65/182 (35%), Gaps = 50/182 (27%)

Query: 105 NYAYDRMIGRGGYGTVFLGS-LSDNKAIAIK---KSRIVYQSQIEQCINKVVVLSQINHR 160
           +Y     +G G +G V +G        +A+K   + +I     + +   ++  L    H 
Sbjct: 12  HYVLGDTLGVGTFGKVKIGEHQLTGHKVAVKILNRQKIRSLDVVGKIKREIQNLKLFRHP 71

Query: 161 NVVGLLGCCLETEVPL-LVNEFVKLPTISWEV------RIRIAAETAE------------ 201
           +++ L    + T     +V E+V       E+        R+    A             
Sbjct: 72  HIIKLYQ-VISTPTDFFMVMEYVS----GGELFDYICKHGRVEEMEARRLFQQILSAVDY 126

Query: 202 ---------DIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTLGYYLHTSQGT 252
                    D+K  N+LLD +   K+ DFG           LS M+    G +L TS G+
Sbjct: 127 CHRHMVVHRDLKPENVLLDAHMNAKIADFG-----------LSNMMSD--GEFLRTSCGS 173

Query: 253 LN 254
            N
Sbjct: 174 PN 175

>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A* Length = 327

 Score = 50.6 bits (122), Expect = 1e-07
 Identities = 47/195 (24%), Positives = 73/195 (37%), Gaps = 44/195 (22%)

Query: 86  GSSDTAKIFTAGELKIATNNYAYDRMIGRGGYGTVFLGSLSDNK------AI-AIKKSRI 138
           GSS+T+     G  KI    +   R++G+GGYG VF              A+  +KK+ I
Sbjct: 1   GSSETS--VNRGPEKIRPECFELLRVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMI 58

Query: 139 VYQS-QIEQCINKVVVLSQINHRNVVGLLGCCLETEVPL-LVNEFV-------------K 183
           V  +        +  +L ++ H  +V L+    +T   L L+ E++              
Sbjct: 59  VRNAKDTAHTKAERNILEEVKHPFIVDLI-YAFQTGGKLYLILEYLSGGELFMQLEREGI 117

Query: 184 LPTISWEVRIRI-AAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPI 229
                 E       AE +              D+K  NI+L+     K+ DFG  K    
Sbjct: 118 FM----EDTACFYLAEISMALGHLHQKGIIYRDLKPENIMLNHQGHVKLTDFGLCKESIH 173

Query: 230 DETQLSTMVQGTLGY 244
           D T   T   GT+ Y
Sbjct: 174 DGTVTHTFC-GTIEY 187

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7 Length = 344

 Score = 50.8 bits (122), Expect = 1e-07
 Identities = 30/181 (16%), Positives = 63/181 (34%), Gaps = 68/181 (37%)

Query: 108 YDRMIGRGGYGTVFLGSLSD------NKAIAIK--------KSRIVYQSQIEQCINKVVV 153
           + +++G G +G V   +         +  +A+K          R    S+++       +
Sbjct: 49  FGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELK-------M 101

Query: 154 LSQI-NHRNVVGLLGCCLETEVPLLVNEFVK----------------------------- 183
           ++Q+ +H N+V LLG C  +    L+ E+                               
Sbjct: 102 MTQLGSHENIVNLLGACTLSGPIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLE 161

Query: 184 ----LPTISWEVRIRIAAETA------EDIKSI-------NILLDDNYTTKVCDFGASKL 226
               L  +++E  +  A + A      E    +       N+L+      K+CDFG ++ 
Sbjct: 162 EEEDLNVLTFEDLLCFAYQVAKGMEFLEFKSCVHRDLAARNVLVTHGKVVKICDFGLARD 221

Query: 227 V 227
           +
Sbjct: 222 I 222

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ... Length = 420

 Score = 50.9 bits (122), Expect = 1e-07
 Identities = 40/161 (24%), Positives = 67/161 (41%), Gaps = 39/161 (24%)

Query: 103 TNNYAYDRMIGRGGYGTVFLGSLSD-NKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRN 161
             +Y   ++IG G +G V+   L D  + +AIKK   V Q +      ++ ++ +++H N
Sbjct: 53  EVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKK---VLQDK-RFKNRELQIMRKLDHCN 108

Query: 162 VVGLLGCCLET-----EVPL-LVNEFV-----KLPTISWEVRIRIAAETAE--------- 201
           +V L      +     EV L LV ++V     ++       +  +     +         
Sbjct: 109 IVRLRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRS 168

Query: 202 ------------DIKSINILLD-DNYTTKVCDFG-ASKLVP 228
                       DIK  N+LLD D    K+CDFG A +LV 
Sbjct: 169 LAYIHSFGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVR 209

>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens} Length = 298

 Score = 50.3 bits (121), Expect = 1e-07
 Identities = 44/223 (19%), Positives = 79/223 (35%), Gaps = 75/223 (33%)

Query: 86  GSSDTAKIFTAGELKIATNNYAYDRMIGRGGYGTVFLG-SLSDNKAIAIK---KSRIVYQ 141
           GSS ++       +++  N Y     IG+G YG V L  + +DN   A+K   K +++ Q
Sbjct: 1   GSSGSSG----DCVQL--NQYTLKDEIGKGSYGVVKLAYNENDNTYYAMKVLSKKKLIRQ 54

Query: 142 SQIEQCINK-----------------------VVVLSQINHRNVVGL---LGCCLETEVP 175
           +   +                           + +L +++H NVV L   L    E  + 
Sbjct: 55  AGFPRRPPPRGTRPAPGGCIQPRGPIEQVYQEIAILKKLDHPNVVKLVEVLDDPNEDHL- 113

Query: 176 LLVNEFVK---LPTISWEVRIRIAAETAE---------------------DIKSINILLD 211
            +V E V    +  +       ++ + A                      DIK  N+L+ 
Sbjct: 114 YMVFELVNQGPVMEV--PTLKPLSEDQARFYFQDLIKGIEYLHYQKIIHRDIKPSNLLVG 171

Query: 212 DNYTTKVCDFGASKLVPIDETQLSTMVQGTLGYYLHTSQGTLN 254
           ++   K+ DFG           +S   +G+    L  + GT  
Sbjct: 172 EDGHIKIADFG-----------VSNEFKGS-DALLSNTVGTPA 202

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus} Length = 332

 Score = 50.7 bits (121), Expect = 1e-07
 Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 2/72 (2%)

Query: 104 NNYAYDRMIGRGGYGTVFLG-SLSDNKAIAIKKSRIVYQS-QIEQCINKVVVLSQINHRN 161
            ++   + +GRGG+G VF   +  D+   AIK+ R+  +    E+ + +V  L+++ H  
Sbjct: 6   TDFEPIQCMGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPG 65

Query: 162 VVGLLGCCLETE 173
           +V      LET 
Sbjct: 66  IVRYFNAWLETP 77

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus} Length = 476

 Score = 50.6 bits (121), Expect = 2e-07
 Identities = 39/180 (21%), Positives = 67/180 (37%), Gaps = 46/180 (25%)

Query: 105 NYAYDRMIGRGGYGTVFLGS-LSDNKAIAIK---KSRIVYQSQIEQCINKVVVLSQINHR 160
           +Y     +G G +G V +G        +A+K   + +I     + +   ++  L    H 
Sbjct: 17  HYILGDTLGVGTFGKVKVGKHELTGHKVAVKILNRQKIRSLDVVGKIRREIQNLKLFRHP 76

Query: 161 NVVGLLGCCLETEVPL-LVNEFV-------------KLPTISWEVR-----IRIAAE--- 198
           +++ L    + T   + +V E+V             +L     E R     I    +   
Sbjct: 77  HIIKLYQ-VISTPSDIFMVMEYVSGGELFDYICKNGRLDEK--ESRRLFQQILSGVDYCH 133

Query: 199 ----TAEDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTLGYYLHTSQGTLN 254
                  D+K  N+LLD +   K+ DFG           LS M+    G +L TS G+ N
Sbjct: 134 RHMVVHRDLKPENVLLDAHMNAKIADFG-----------LSNMMSD--GEFLRTSCGSPN 180

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B Length = 362

 Score = 50.4 bits (121), Expect = 2e-07
 Identities = 33/177 (18%), Positives = 57/177 (32%), Gaps = 43/177 (24%)

Query: 103 TNNYAYDRMIGRGGYGTVFLGS-LSDNKAIAIK---KSRIVYQSQIEQCINKVVVLSQIN 158
           ++NY     +G+G +  V      +     A K     ++      ++   +  +  ++ 
Sbjct: 28  SDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLS-ARDFQKLEREARICRKLQ 86

Query: 159 HRNVVGLLGCCLETEVPL-LVNEFVKLPTISWEVRIRIAA-------ETAEDIKSI---- 206
           H N+V L     + E    LV + V       E+   I A       + +  I+ I    
Sbjct: 87  HPNIVRLHDSI-QEESFHYLVFDLVT----GGELFEDIVAREFYSEADASHCIQQILESI 141

Query: 207 ----------------NILL---DDNYTTKVCDFGASKLVPIDETQLSTMVQGTLGY 244
                           N+LL         K+ DFG +  V  D         GT GY
Sbjct: 142 AYCHSNGIVHRNLKPENLLLASKAKGAAVKLADFGLAIEVN-DSEAWHGFA-GTPGY 196

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A Length = 351

 Score = 50.0 bits (120), Expect = 2e-07
 Identities = 27/176 (15%), Positives = 54/176 (30%), Gaps = 39/176 (22%)

Query: 106 YAYDRMIGRGGYGTVFLGS-LSDNKAIAIK---KSRIVYQSQ--IEQCINKVVVLSQINH 159
           Y    +IG+G +  V         +  A+K    ++         E    +  +   + H
Sbjct: 26  YELCEVIGKGPFSVVRRCINRETGQQFAVKIVDVAKFTSSPGLSTEDLKREASICHMLKH 85

Query: 160 RNVVGLLGCCLETEVPL-LVNEFVK----LPTISWEVRIRIA---AETAEDIKSI----- 206
            ++V LL     ++  L +V EF+        I            A  +  ++ I     
Sbjct: 86  PHIVELLETY-SSDGMLYMVFEFMDGADLCFEIVKRADAGFVYSEAVASHYMRQILEALR 144

Query: 207 ---------------NILL---DDNYTTKVCDFGASKLVPIDETQLSTMVQGTLGY 244
                           +LL   +++   K+  FG +  +          V GT  +
Sbjct: 145 YCHDNNIIHRDVKPHCVLLASKENSAPVKLGGFGVAIQLGESGLVAGGRV-GTPHF 199

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A Length = 674

 Score = 50.4 bits (120), Expect = 2e-07
 Identities = 37/183 (20%), Positives = 62/183 (33%), Gaps = 39/183 (21%)

Query: 95  TAGELKIATNNYAYDRMIGRGGYGTVFLGSLSDNKAI----AIKKSRIVYQSQIEQCINK 150
                ++   ++ +  ++G+G +G V L        +     +KK  ++    +E  + +
Sbjct: 332 NGNRDRMKLTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVE 391

Query: 151 VVVLSQIN-HRNVVGLLGCCLETEVPL-LVNEFV-------------KLPTISWEVRIRI 195
             VL+       +  L   C +T   L  V E+V             +      E     
Sbjct: 392 KRVLALPGKPPFLTQLH-SCFQTMDRLYFVMEYVNGGDLMYHIQQVGRFK----EPHAVF 446

Query: 196 -AAETAE-------------DIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGT 241
            AAE A              D+K  N++LD     K+ DFG  K    D     T   GT
Sbjct: 447 YAAEIAIGLFFLQSKGIIYRDLKLDNVMLDSEGHIKIADFGMCKENIWDGVTTKTFC-GT 505

Query: 242 LGY 244
             Y
Sbjct: 506 PDY 508

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A Length = 290

 Score = 49.9 bits (120), Expect = 2e-07
 Identities = 29/145 (20%), Positives = 54/145 (37%), Gaps = 34/145 (23%)

Query: 112 IGRGGYGTVFLGS-LSDNKAIAIKKSRIVY----QSQIEQCINKVVVLSQINHRNVVGLL 166
           +GRG YG V     +   + +A+K+ R       Q ++   ++  + +  ++    V   
Sbjct: 15  LGRGAYGVVEKMRHVPSGQIMAVKRIRATVNSQEQKRLLMDLD--ISMRTVDCPFTVTFY 72

Query: 167 GC---------CLE----TEVPLLVNEFVKLPTISWEVRIRIAAETAE------------ 201
           G          C+E    +          K  TI  ++  +IA    +            
Sbjct: 73  GALFREGDVWICMELMDTSLDKFYKQVIDKGQTIPEDILGKIAVSIVKALEHLHSKLSVI 132

Query: 202 --DIKSINILLDDNYTTKVCDFGAS 224
             D+K  N+L++     K+CDFG S
Sbjct: 133 HRDVKPSNVLINALGQVKMCDFGIS 157

>3g51_A Ribosomal protein S6 kinase alpha-3; N-terminal kinase domain of P90 ribosomal S6 kinase 2, ATP- binding, nucleotide-binding, phosphoprotein; HET: ANP; 1.80A {Mus musculus} PDB: 2z7q_A* 2z7r_A* 2z7s_A* Length = 325

 Score = 49.9 bits (120), Expect = 2e-07
 Identities = 42/170 (24%), Positives = 72/170 (42%), Gaps = 42/170 (24%)

Query: 110 RMIGRGGYGTVFL---GSLSDNKAI----AIKKSRIVYQSQIEQCINKVVVLSQINHRNV 162
           +++G+G +G VFL    S SD + +     +KK+ +  + ++     +  +L ++NH  +
Sbjct: 30  KVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLKVRDRVR-TKMERDILVEVNHPFI 88

Query: 163 VGLLGCCLETEVPL-LVNEFV-------------KLPTISWEVRIRI-AAETA------- 200
           V L     +TE  L L+ +F+                    E  ++   AE A       
Sbjct: 89  VKLH-YAFQTEGKLYLILDFLRGGDLFTRLSKEVMFT----EEDVKFYLAELALALDHLH 143

Query: 201 ------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTLGY 244
                  D+K  NILLD+    K+ DFG SK     E +  +   GT+ Y
Sbjct: 144 SLGIIYRDLKPENILLDEEGHIKLTDFGLSKESIDHEKKAYSFC-GTVEY 192

>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe} Length = 336

 Score = 49.6 bits (119), Expect = 3e-07
 Identities = 39/179 (21%), Positives = 65/179 (36%), Gaps = 45/179 (25%)

Query: 105 NYAYDRMIGRGGYGTVFLGS-LSDNKAIAIK---KSRIVYQSQIEQCINKVVVLSQINHR 160
            Y     +G G +G V L +     + +A+K   +  +       +   ++  L  + H 
Sbjct: 10  PYIIRETLGEGSFGKVKLATHYKTQQKVALKFISRQLLKKSDMHMRVEREISYLKLLRHP 69

Query: 161 NVVGLLGCCLETEVPL-LVNEFV------------KLPTISWEVR-----IRIAAE---- 198
           +++ L    + T   + +V E+             ++     E R     I  A E    
Sbjct: 70  HIIKLYD-VITTPTDIVMVIEYAGGELFDYIVEKKRMTED--EGRRFFQQIICAIEYCHR 126

Query: 199 ---TAEDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTLGYYLHTSQGTLN 254
                 D+K  N+LLDDN   K+ DFG S +          M  G     L TS G+ N
Sbjct: 127 HKIVHRDLKPENLLLDDNLNVKIADFGLSNI----------MTDGNF---LKTSCGSPN 172

>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens} Length = 353

 Score = 49.5 bits (119), Expect = 3e-07
 Identities = 44/168 (26%), Positives = 65/168 (38%), Gaps = 39/168 (23%)

Query: 110 RMIGRGGYGTVFLGSLSDNKAI----AIKKSRIVYQSQIEQCINKVVVLSQI-NHRNVVG 164
           R++G+G +G V L  + +   +     +KK  I+    +E  + +  +LS   NH  +  
Sbjct: 29  RVLGKGSFGKVMLARVKETGDLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQ 88

Query: 165 LLGCCLETEVPL-LVNEFV-------------KLPTISWEVRIRI-AAETA--------- 200
           L  CC +T   L  V EFV             +      E R R  AAE           
Sbjct: 89  LF-CCFQTPDRLFFVMEFVNGGDLMFHIQKSRRFD----EARARFYAAEIISALMFLHDK 143

Query: 201 ----EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTLGY 244
                D+K  N+LLD     K+ DFG  K    +    +T   GT  Y
Sbjct: 144 GIIYRDLKLDNVLLDHEGHCKLADFGMCKEGICNGVTTATFC-GTPDY 190

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens} Length = 349

 Score = 49.3 bits (118), Expect = 4e-07
 Identities = 38/174 (21%), Positives = 66/174 (37%), Gaps = 41/174 (23%)

Query: 103 TNNYAYDRMIGRGGYGTVFLGS-LSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRN 161
           ++ +  +  +GRG    V+        K  A+K   +      +    ++ VL +++H N
Sbjct: 52  SDFFEVESELGRGATSIVYRCKQKGTQKPYALKV--LKKTVDKKIVRTEIGVLLRLSHPN 109

Query: 162 VVGLLGCCLETEVPL-LVNEFVKLPTISWEVRIRIAA-------ETAEDIKSI------- 206
           ++ L     ET   + LV E V       E+  RI         + A+ +K I       
Sbjct: 110 IIKLKEIF-ETPTEISLVLELVT----GGELFDRIVEKGYYSERDAADAVKQILEAVAYL 164

Query: 207 -------------NILL---DDNYTTKVCDFGASKLVPIDETQLSTMVQGTLGY 244
                        N+L      +   K+ DFG SK+V   +  + T+  GT GY
Sbjct: 165 HENGIVHRDLKPENLLYATPAPDAPLKIADFGLSKIVE-HQVLMKTVC-GTPGY 216

>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A* Length = 373

 Score = 48.8 bits (117), Expect = 5e-07
 Identities = 40/168 (23%), Positives = 64/168 (38%), Gaps = 39/168 (23%)

Query: 110 RMIGRGGYGTVFLGSLSDNKAI----AIKKSRIVYQSQIEQCIN-KVVVLSQINHRNVVG 164
           ++IG+G +G V L      +       ++K  I+ + + +  ++ + V+L  + H  +VG
Sbjct: 44  KVIGKGSFGKVLLARHKAEEVFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVG 103

Query: 165 LLGCCLETEVPL-LVNEFV-------------KLPTISWEVRIRI-AAETAE-------- 201
           L     +T   L  V +++                    E R R  AAE A         
Sbjct: 104 LH-FSFQTADKLYFVLDYINGGELFYHLQRERCFL----EPRARFYAAEIASALGYLHSL 158

Query: 202 -----DIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTLGY 244
                D+K  NILLD      + DFG  K      +  ST   GT  Y
Sbjct: 159 NIVYRDLKPENILLDSQGHIVLTDFGLCKENIEHNSTTSTFC-GTPEY 205

>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major} Length = 360

 Score = 48.8 bits (117), Expect = 5e-07
 Identities = 44/170 (25%), Positives = 70/170 (41%), Gaps = 51/170 (30%)

Query: 103 TNNYAYDRMIGRGGYGTVFLGSLSD-NKAIAIKKSRIVYQSQI----EQCINKVVVLSQI 157
            + +  +RM G+G +GTV LG       ++AIKK   V Q       E  I +   L+ +
Sbjct: 22  MDRFQVERMAGQGTFGTVQLGKEKSTGMSVAIKK---VIQDPRFRNRELQIMQ--DLAVL 76

Query: 158 NHRNVVGLL------GCCLETEVPL-LVNEFV----------------KLPTISWEVRIR 194
           +H N+V L       G     ++ L +V E+V                  P I   +++ 
Sbjct: 77  HHPNIVQLQSYFYTLGERDRRDIYLNVVMEYVPDTLHRCCRNYYRRQVAPPPI--LIKVF 134

Query: 195 ----------IAAETAE----DIKSINILLD-DNYTTKVCDFG-ASKLVP 228
                     +   +      DIK  N+L++  + T K+CDFG A KL P
Sbjct: 135 LFQLIRSIGCLHLPSVNVCHRDIKPHNVLVNEADGTLKLCDFGSAKKLSP 184

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* Length = 360

 Score = 48.7 bits (116), Expect = 5e-07
 Identities = 39/200 (19%), Positives = 83/200 (41%), Gaps = 38/200 (19%)

Query: 76  LLQLQLSKRSGSSDTAKIFTAGEL-KIATNNYAYDRMIGRGGYGTVFLGSL-SDNKAIAI 133
           L +L+L ++      A +    ++ ++  +++     +G G  G VF  S       +A 
Sbjct: 4   LEELELDEQQRKRLEAFLTQKQKVGELKDDDFEKISELGAGNGGVVFKVSHKPSGLVMAR 63

Query: 134 KKSRI----VYQSQIEQCINKVVVLSQINHRNVVGLLGCCL-ETEVPLL--------VNE 180
           K   +      ++QI + +    VL + N   +VG  G    + E+ +         +++
Sbjct: 64  KLIHLEIKPAIRNQIIRELQ---VLHECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQ 120

Query: 181 FVKLP-TISWEVRIRIAAETAE--------------DIKSINILLDDNYTTKVCDFGAS- 224
            +K    I  ++  +++    +              D+K  NIL++     K+CDFG S 
Sbjct: 121 VLKKAGRIPEQILGKVSIAVIKGLTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGVSG 180

Query: 225 KLVPIDETQLSTMVQGTLGY 244
           +L+   ++  ++ V GT  Y
Sbjct: 181 QLI---DSMANSFV-GTRSY 196

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens} Length = 311

 Score = 48.7 bits (117), Expect = 6e-07
 Identities = 36/146 (24%), Positives = 53/146 (36%), Gaps = 28/146 (19%)

Query: 104 NNYAYDRMIGRGGYGTVFLG-SLSDNKAIAIKKSRIVYQSQIEQCIN--KVVVLSQINHR 160
             Y     IG G YG VF   +    + +AIKK        + + I   ++ +L Q+ H 
Sbjct: 3   EKYEKIGKIGEGSYGVVFKCRNRDTGQIVAIKKFLESEDDPVIKKIALREIRMLKQLKHP 62

Query: 161 NVVGLLGCCLETEVPLLVNEFVKLPTISWEVRIRIAAETAEDIKSI-------------- 206
           N+V LL          LV E+    T+  E+           +KSI              
Sbjct: 63  NLVNLLEVFRRKRRLHLVFEYCDH-TVLHELDRYQRGVPEHLVKSITWQTLQAVNFCHKH 121

Query: 207 ----------NILLDDNYTTKVCDFG 222
                     NIL+  +   K+CDFG
Sbjct: 122 NCIHRDVKPENILITKHSVIKLCDFG 147

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A* Length = 434

 Score = 48.6 bits (116), Expect = 7e-07
 Identities = 30/188 (15%), Positives = 62/188 (32%), Gaps = 51/188 (27%)

Query: 104 NNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQI-NHRNV 162
           N    ++++G G  GTV        + +A+K    +     +  + ++ +L++  +H NV
Sbjct: 15  NLVVSEKILGYGSSGTVVFQGSFQGRPVAVK---RMLIDFCDIALMEIKLLTESDDHPNV 71

Query: 163 VGLLGCCLETEVPL-LVNEF---------VKLPTISWEVRIRIAAETAE----------- 201
           +    C   T+  L +  E                   ++++                  
Sbjct: 72  IRYY-CSETTDRFLYIALELCNLNLQDLVESKNVSDENLKLQKEYNPISLLRQIASGVAH 130

Query: 202 ---------DIKSINILLD-------------DNYTTKVCDFGASKLVPIDETQLSTMVQ 239
                    D+K  NIL+              +N    + DFG  K +   ++   T + 
Sbjct: 131 LHSLKIIHRDLKPQNILVSTSSRFTADQQTGAENLRILISDFGLCKKLDSGQSSFRTNLN 190

Query: 240 ---GTLGY 244
              GT G+
Sbjct: 191 NPSGTSGW 198

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A Length = 342

 Score = 48.4 bits (116), Expect = 7e-07
 Identities = 37/173 (21%), Positives = 62/173 (35%), Gaps = 38/173 (21%)

Query: 103 TNNYAYDRMIGRGGYGTVFLG-SLSDNKAIAIK---KSRIVYQSQIEQCINKVVVLSQIN 158
           T+ Y     IG G Y         + N   A+K   KS+     +IE      ++L    
Sbjct: 21  TDGYEVKEDIGVGSYSVCKRCIHKATNMEFAVKIIDKSKRDPTEEIE------ILLRYGQ 74

Query: 159 HRNVVGLLGCCLETEVPLLVNEFVK----LPTISWEVR---------IRIAAETAE---- 201
           H N++ L     + +   +V E +K    L  I  +           +    +T E    
Sbjct: 75  HPNIITLKDVYDDGKYVYVVTELMKGGELLDKILRQKFFSEREASAVLFTITKTVEYLHA 134

Query: 202 ------DIKSINILL----DDNYTTKVCDFGASKLVPIDETQLSTMVQGTLGY 244
                 D+K  NIL      +  + ++CDFG +K +  +   L T    T  +
Sbjct: 135 QGVVHRDLKPSNILYVDESGNPESIRICDFGFAKQLRAENGLLMTPC-YTANF 186

>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A* Length = 345

 Score = 48.4 bits (116), Expect = 8e-07
 Identities = 41/169 (24%), Positives = 63/169 (37%), Gaps = 41/169 (24%)

Query: 110 RMIGRGGYGTVFLGSLSDNKAI----AIKKSRIVYQSQIEQCIN--KVVVLSQINHRNVV 163
           +M+G+G +G VFL             A+KK  ++    +E C    K V+     H  + 
Sbjct: 23  KMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVE-CTMVEKRVLSLAWEHPFLT 81

Query: 164 GLLGCCLETEVPL-LVNEFV-------------KLPTISWEVRIRI-AAETA-------- 200
            +  C  +T+  L  V E++             K        R    AAE          
Sbjct: 82  HMF-CTFQTKENLFFVMEYLNGGDLMYHIQSCHKFD----LSRATFYAAEIILGLQFLHS 136

Query: 201 -----EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTLGY 244
                 D+K  NILLD +   K+ DFG  K   + + + +T   GT  Y
Sbjct: 137 KGIVYRDLKLDNILLDKDGHIKIADFGMCKENMLGDAKTNTFC-GTPDY 184

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A* Length = 311

 Score = 48.0 bits (115), Expect = 1e-06
 Identities = 36/178 (20%), Positives = 64/178 (35%), Gaps = 45/178 (25%)

Query: 106 YAYDRMIGRGGYGTVFLGS-LSDNKAIAIKKSRIVYQSQIEQCINKVVVL---------S 155
           Y    ++G GG   V L   L D++ +A+K  R           +    L         +
Sbjct: 14  YELGEILGFGGMSEVHLARDLRDHRDVAVKVLRADLAR------DPSFYLRFRREAQNAA 67

Query: 156 QINHRNVVGLL--GC--CLETEVPLLVNEFVKLPT----------ISWEVRIRIAAETAE 201
            +NH  +V +   G        +P +V E+V   T          ++ +  I + A+  +
Sbjct: 68  ALNHPAIVAVYDTGEAETPAGPLPYIVMEYVDGVTLRDIVHTEGPMTPKRAIEVIADACQ 127

Query: 202 -------------DIKSINILLDDNYTTKVCDFGASKLVPIDETQL--STMVQGTLGY 244
                        D+K  NI++      KV DFG ++ +      +  +  V GT  Y
Sbjct: 128 ALNFSHQNGIIHRDVKPANIMISATNAVKVMDFGIARAIADSGNSVTQTAAVIGTAQY 185

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A Length = 328

 Score = 47.7 bits (114), Expect = 1e-06
 Identities = 41/182 (22%), Positives = 69/182 (37%), Gaps = 51/182 (28%)

Query: 105 NYAYDRMIGRGGYGTVFLGS-LSDNKAIAIK---KSRIVYQSQIEQCINKVVVLSQINHR 160
           NY   + IG+G +  V L   +   + +AIK   K+++   + +++   +V ++  +NH 
Sbjct: 16  NYRLLKTIGKGNFAKVKLARHILTGREVAIKIIDKTQLN-PTSLQKLFREVRIMKILNHP 74

Query: 161 NVVGLLGCCLETEVPL-LVNEFVKLPTISWEV------RIRIAAETAE------------ 201
           N+V L    +ETE  L L+ E+        EV        R+  + A             
Sbjct: 75  NIVKLFEV-IETEKTLYLIMEYAS----GGEVFDYLVAHGRMKEKEARSKFRQIVSAVQY 129

Query: 202 ---------DIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTLGYYLHTSQGT 252
                    D+K+ N+LLD +   K+ DFG            S       G  L    G 
Sbjct: 130 CHQKRIVHRDLKAENLLLDADMNIKIADFG-----------FSNEFTV--GGKLDAFCGA 176

Query: 253 LN 254
             
Sbjct: 177 PP 178

>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7 Length = 346

 Score = 47.6 bits (114), Expect = 1e-06
 Identities = 36/151 (23%), Positives = 66/151 (43%), Gaps = 35/151 (23%)

Query: 104 NNYAYDRMIGRGGYGTVFLG-SLSDNKAIAIKKSRIVYQSQIEQCINK-----VVVLSQI 157
             Y     +G G + TV+     + N+ +AIKK ++ ++S+ +  IN+     + +L ++
Sbjct: 10  KRYEKLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQEL 69

Query: 158 NHRNVVGLLGCCLETEVPLLVNEFVK--LPTISWEVRIRIAAETAEDIKSI--------- 206
           +H N++GLL          LV +F++  L  I  +  + +   T   IK+          
Sbjct: 70  SHPNIIGLLDAFGHKSNISLVFDFMETDLEVIIKDNSLVL---TPSHIKAYMLMTLQGLE 126

Query: 207 ---------------NILLDDNYTTKVCDFG 222
                          N+LLD+N   K+ DFG
Sbjct: 127 YLHQHWILHRDLKPNNLLLDENGVLKLADFG 157

>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A* Length = 353

 Score = 47.2 bits (113), Expect = 2e-06
 Identities = 37/193 (19%), Positives = 66/193 (34%), Gaps = 39/193 (20%)

Query: 85  SGSSDTAKIFTAGELKIATNNYAYDRMIGRGGYGTVFLGSLSDNKAI----AIKKSRIVY 140
           + ++ +         ++   ++ +  ++G+G +G V L        +     +KK  ++ 
Sbjct: 1   TTNTVSKFDNNGNRDRMKLTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQ 60

Query: 141 QSQIEQCINKVVVLSQI-NHRNVVGLLGCCLETEVPL-LVNEFV-------------KLP 185
              +E  + +  VL+       +  L   C +T   L  V E+V             +  
Sbjct: 61  DDDVECTMVEKRVLALPGKPPFLTQLH-SCFQTMDRLYFVMEYVNGGDLMYHIQQVGRFK 119

Query: 186 TISWEVRIRI-AAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDE 231
               E      AAE A              D+K  N++LD     K+ DFG  K    D 
Sbjct: 120 ----EPHAVFYAAEIAIGLFFLQSKGIIYRDLKLDNVMLDSEGHIKIADFGMCKENIWDG 175

Query: 232 TQLSTMVQGTLGY 244
               T   GT  Y
Sbjct: 176 VTTKTFC-GTPDY 187

>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7 Length = 355

 Score = 47.3 bits (113), Expect = 2e-06
 Identities = 49/182 (26%), Positives = 73/182 (40%), Gaps = 42/182 (23%)

Query: 100 KIATNNYAYDRMIGRGGYGTVFL---GSLSDNKAI-AIK---KSRIVYQS-QIEQCINKV 151
           K+   N+   +++G G YG VFL    S  D   + A+K   K+ IV ++   E    + 
Sbjct: 50  KVGIENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTER 109

Query: 152 VVLSQINHRN-VVGLLGCCLETEVPL-LVNEFV-------------KLPTISWEVRIRI- 195
            VL  I     +V L     +TE  L L+ +++             +      E  ++I 
Sbjct: 110 QVLEHIRQSPFLVTLH-YAFQTETKLHLILDYINGGELFTHLSQRERFT----EHEVQIY 164

Query: 196 AAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTL 242
             E                DIK  NILLD N    + DFG SK    DET+ +    GT+
Sbjct: 165 VGEIVLALEHLHKLGIIYRDIKLENILLDSNGHVVLTDFGLSKEFVADETERAYDFCGTI 224

Query: 243 GY 244
            Y
Sbjct: 225 EY 226

>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A Length = 361

 Score = 47.0 bits (112), Expect = 2e-06
 Identities = 35/184 (19%), Positives = 64/184 (34%), Gaps = 56/184 (30%)

Query: 105 NYAYDRMIGRGGYGTVFLG-SLSDNKAIAIK---KSRIVYQSQIEQCINKVVVLSQINHR 160
            Y + + IG G +G   L       + +A+K   +   +    +++   +++    + H 
Sbjct: 21  RYDFVKDIGSGNFGVARLMRDKLTKELVAVKYIERGAAI-DENVQR---EIINHRSLRHP 76

Query: 161 NVVGLLGCCLETEVPL-LVNEFVKLPTISWEV--RI----RIAAETAE------------ 201
           N+V      + T   L ++ E+        E+  RI    R + + A             
Sbjct: 77  NIVRFKEV-ILTPTHLAIIMEYAS----GGELYERICNAGRFSEDEARFFFQQLLSGVSY 131

Query: 202 ---------DIKSINILLDDNYTT--KVCDFGASKLVPIDETQLSTMVQGTLGYYLHTSQ 250
                    D+K  N LLD +     K+CDFG SK            V  +      ++ 
Sbjct: 132 CHSMQICHRDLKLENTLLDGSPAPRLKICDFGYSKS----------SVLHSQ---PKSTV 178

Query: 251 GTLN 254
           GT  
Sbjct: 179 GTPA 182

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens} Length = 318

 Score = 47.0 bits (112), Expect = 2e-06
 Identities = 34/167 (20%), Positives = 57/167 (34%), Gaps = 34/167 (20%)

Query: 89  DTAKIFTAGE-LKIATNNYAYDRMIGRGGYGTVFLGS-LSDNKAIAIKKSRI----VYQS 142
            T  +   G+  +   N+      +G G  G V+          IA+K+ R         
Sbjct: 9   QTGYLTIGGQRYQAEINDLENLGEMGSGTCGQVWKMRFRKTGHVIAVKQMRRSGNKEENK 68

Query: 143 QIEQCINKVVVLSQINHRNVVGLLGCCL-ETEVPLLVNEF----------VKLPTISWEV 191
           +I   ++  VVL   +   +V   G  +  T+V  +  E                I   +
Sbjct: 69  RILMDLD--VVLKSHDCPYIVQCFGTFITNTDV-FIAMELMGTCAEKLKKRMQGPIPERI 125

Query: 192 RIRIAAETAE--------------DIKSINILLDDNYTTKVCDFGAS 224
             ++     +              D+K  NILLD+    K+CDFG S
Sbjct: 126 LGKMTVAIVKALYYLKEKHGVIHRDVKPSNILLDERGQIKLCDFGIS 172

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 46.4 bits (110), Expect = 5e-06
 Identities = 31/174 (17%), Positives = 60/174 (34%), Gaps = 39/174 (22%)

Query: 103 TNNYAYDRMIGRGGYGTVFLG-SLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRN 161
            ++Y     +G G +G V      +     A K     ++S  E    ++  +S + H  
Sbjct: 156 LDHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPT 215

Query: 162 VVGLLGCCLETEVPL-LVNEFVKLPTISWEVRIRIAAETAE------------------- 201
           +V L     E +  + ++ EF+       E+  ++A E  +                   
Sbjct: 216 LVNLHDAF-EDDNEMVMIYEFMS----GGELFEKVADEHNKMSEDEAVEYMRQVCKGLCH 270

Query: 202 ---------DIKSINILL--DDNYTTKVCDFGASKLVPIDETQLSTMVQGTLGY 244
                    D+K  NI+     +   K+ DFG +    +D  Q   +  GT  +
Sbjct: 271 MHENNYVHLDLKPENIMFTTKRSNELKLIDFGLTAH--LDPKQSVKVTTGTAEF 322

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} Length = 331

 Score = 45.7 bits (109), Expect = 5e-06
 Identities = 34/146 (23%), Positives = 58/146 (39%), Gaps = 28/146 (19%)

Query: 104 NNYAYDRMIGRGGYGTVFLG-SLSDNKAIAIKKSRIVYQSQIEQCIN--KVVVLSQINHR 160
             Y    ++G G YG V    +    + +AIKK       ++ + I   ++ +L Q+ H 
Sbjct: 25  EKYENLGLVGEGSYGMVMKCRNKDTGRIVAIKKFLESDDDKMVKKIAMREIKLLKQLRHE 84

Query: 161 NVVGLLGCCLETEVPLLVNEFVKLPTISWEVRIRIAAETAEDIKSI-------------- 206
           N+V LL  C + +   LV EFV   TI  ++ +       + ++                
Sbjct: 85  NLVNLLEVCKKKKRWYLVFEFVDH-TILDDLELFPNGLDYQVVQKYLFQIINGIGFCHSH 143

Query: 207 ----------NILLDDNYTTKVCDFG 222
                     NIL+  +   K+CDFG
Sbjct: 144 NIIHRDIKPENILVSQSGVVKLCDFG 169

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis} Length = 309

 Score = 45.7 bits (109), Expect = 5e-06
 Identities = 28/174 (16%), Positives = 53/174 (30%), Gaps = 43/174 (24%)

Query: 106 YAYDRMIGRGGYGTVFLGS-LSDNKAIAIKKSRIVYQSQIEQCINKVVVL---------S 155
           Y   R++GRGG G V+        + +A+K       S      + V             
Sbjct: 36  YRLRRLVGRGGMGDVYEAEDTVRERIVALKLMSETLSS------DPVFRTRMQREARTAG 89

Query: 156 QINHRNVVGLLGCCLETEVPLLVNEFVKLPT----------ISWEVRIRIAAETAE---- 201
           ++   +VV +           +    +              ++    + I  +       
Sbjct: 90  RLQEPHVVPIHDFGEIDGQLYVDMRLINGVDLAAMLRRQGPLAPPRAVAIVRQIGSALDA 149

Query: 202 ---------DIKSINILLDDNYTTKVCDFGASKLVPIDETQLST--MVQGTLGY 244
                    D+K  NIL+  +    + DFG +      + +L+      GTL Y
Sbjct: 150 AHAAGATHRDVKPENILVSADDFAYLVDFGIASAT--TDEKLTQLGNTVGTLYY 201

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A* Length = 361

 Score = 45.4 bits (108), Expect = 6e-06
 Identities = 36/184 (19%), Positives = 58/184 (31%), Gaps = 52/184 (28%)

Query: 103 TNNYAYDRMIGRGGYGTVFLG-SLSDNKAIA---IKKSRIV---YQSQIEQCINKVVVLS 155
            + Y     +G G +  V      S     A   IKK +          E+   +V +L 
Sbjct: 11  EDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVCREEIEREVSILR 70

Query: 156 QINHRNVVGLLGCCLETEVPL-LVNEFVK---LPTISWEVRIRIAA-------ETAEDIK 204
           Q+ H N++ L     E    + L+ E V    L    ++    +A        E    IK
Sbjct: 71  QVLHPNIITLHDVY-ENRTDVVLILELVSGGEL----FD---FLAQKESLSEEEATSFIK 122

Query: 205 SI--------------------NILL----DDNYTTKVCDFGASKLVPIDETQLSTMVQG 240
            I                    NI+L          K+ DFG +    I++      + G
Sbjct: 123 QILDGVNYLHTKKIAHFDLKPENIMLLDKNIPIPHIKLIDFGLAHE--IEDGVEFKNIFG 180

Query: 241 TLGY 244
           T  +
Sbjct: 181 TPEF 184

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7 Length = 387

 Score = 45.5 bits (108), Expect = 7e-06
 Identities = 31/174 (17%), Positives = 61/174 (35%), Gaps = 39/174 (22%)

Query: 103 TNNYAYDRMIGRGGYGTVFLG-SLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRN 161
            + Y     +G G +G V      +  +    K     Y        N++ +++Q++H  
Sbjct: 50  YDYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPK 109

Query: 162 VVGLLGCCLETEVPL-LVNEFVKLPTISWEVRIRIAAETAE------------------- 201
           ++ L     E +  + L+ EF+       E+  RIAAE  +                   
Sbjct: 110 LINLHDAF-EDKYEMVLILEFLS----GGELFDRIAAEDYKMSEAEVINYMRQACEGLKH 164

Query: 202 ---------DIKSINILL--DDNYTTKVCDFGASKLVPIDETQLSTMVQGTLGY 244
                    DIK  NI+       + K+ DFG +    ++  ++  +   T  +
Sbjct: 165 MHEHSIVHLDIKPENIMCETKKASSVKIIDFGLATK--LNPDEIVKVTTATAEF 216

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ... Length = 283

 Score = 44.9 bits (107), Expect = 9e-06
 Identities = 36/181 (19%), Positives = 61/181 (33%), Gaps = 46/181 (25%)

Query: 103 TNNYAYDRMIGRGGYGTVFLG-SLSDNKAIA---IKKSRIV---YQSQIEQCINKVVVLS 155
            ++Y     +G G +  V         K  A   IKK R+         E+   +V +L 
Sbjct: 4   EDHYEMGEELGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSREEIEREVNILR 63

Query: 156 QINHRNVVGLLGCCLETEVPL-LVNEFVKLPTISWEVRIRIAA-------ETAEDIKSI- 206
           +I H N++ L     E +  + L+ E V       E+   +A        E  + +K I 
Sbjct: 64  EIRHPNIITLHDIF-ENKTDVVLILELVS----GGELFDFLAEKESLTEDEATQFLKQIL 118

Query: 207 -------------------NILL----DDNYTTKVCDFGASKLVPIDETQLSTMVQGTLG 243
                              NI+L      N   K+ DFG +  +     +   +  GT  
Sbjct: 119 DGVHYLHSKRIAHFDLKPENIMLLDKNVPNPRIKLIDFGIAHKIE-AGNEFKNIF-GTPE 176

Query: 244 Y 244
           +
Sbjct: 177 F 177

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A Length = 316

 Score = 45.0 bits (107), Expect = 9e-06
 Identities = 36/177 (20%), Positives = 61/177 (34%), Gaps = 52/177 (29%)

Query: 111 MIGRGGYGTVFLG-SLSDNKAIAIK---KSRIVYQSQIEQCINKVVVLSQI-NHRNVVGL 165
           ++G G +  V    +L  ++  A+K   K          +   +V +L Q   HRNV+ L
Sbjct: 20  VLGEGAHARVQTCINLITSQEYAVKIIEKQPG---HIRSRVFREVEMLYQCQGHRNVLEL 76

Query: 166 LGCCLETEVPLLVNEFVK---LPTISWEVRI--------RIAAETAEDIKSI-------- 206
           +    E +   LV E ++   + +      I          A+   +D+ S         
Sbjct: 77  IEFFEEEDRFYLVFEKMRGGSILS-----HIHKRRHFNELEASVVVQDVASALDFLHNKG 131

Query: 207 ---------NILL---DDNYTTKVCDFGASKLV-------PIDETQLSTMVQGTLGY 244
                    NIL    +     K+CDF     +       PI   +L T   G+  Y
Sbjct: 132 IAHRDLKPENILCEHPNQVSPVKICDFDLGSGIKLNGDCSPISTPELLTPC-GSAEY 187

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vid_A* 3hng_A* Length = 359

 Score = 44.9 bits (106), Expect = 1e-05
 Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 8/78 (10%)

Query: 109 DRMIGRGGYGTVFLGSL------SDNKAIAIKKSR-IVYQSQIEQCINKVVVLSQI-NHR 160
            + +GRG +G V           +  + +A+K  +     S+    ++++ +L  I +H 
Sbjct: 27  GKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHL 86

Query: 161 NVVGLLGCCLETEVPLLV 178
           NVV LLG C +   PL+V
Sbjct: 87  NVVNLLGACTKPGGPLMV 104

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A Length = 321

 Score = 44.6 bits (106), Expect = 1e-05
 Identities = 37/184 (20%), Positives = 58/184 (31%), Gaps = 52/184 (28%)

Query: 103 TNNYAYDRMIGRGGYGTVFLG-SLSDNKAIA---IKKSRIV---YQSQIEQCINKVVVLS 155
            + Y     +G G +  V      S     A   IKK +          E+   +V +L 
Sbjct: 11  EDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIEREVSILR 70

Query: 156 QINHRNVVGLLGCCLETEVPL-LVNEFVK---LPTISWEVRIRIAA-------ETAEDIK 204
           Q+ H NV+ L     E    + L+ E V    L    ++    +A        E    IK
Sbjct: 71  QVLHHNVITLHDVY-ENRTDVVLILELVSGGEL----FD---FLAQKESLSEEEATSFIK 122

Query: 205 SI--------------------NILL----DDNYTTKVCDFGASKLVPIDETQLSTMVQG 240
            I                    NI+L          K+ DFG +  +  D  +   +  G
Sbjct: 123 QILDGVNYLHTKKIAHFDLKPENIMLLDKNIPIPHIKLIDFGLAHEIE-DGVEFKNIF-G 180

Query: 241 TLGY 244
           T  +
Sbjct: 181 TPEF 184

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens} Length = 373

 Score = 44.3 bits (105), Expect = 2e-05
 Identities = 32/161 (19%), Positives = 62/161 (38%), Gaps = 31/161 (19%)

Query: 112 IGRGGYGTVFLG-SLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCL 170
           +G G +G V      +    +A K  +       E+  N++ V++Q++H N++ L     
Sbjct: 97  LGGGRFGQVHKCEETATGLKLAAKIIKTRGMKDKEEVKNEISVMNQLDHANLIQLYD-AF 155

Query: 171 ETEVPL-LVNEFV-----------KLPTIS-WEVR--IRIAAETAE----------DIKS 205
           E++  + LV E+V           +   ++  +    ++   E             D+K 
Sbjct: 156 ESKNDIVLVMEYVDGGELFDRIIDESYNLTELDTILFMKQICEGIRHMHQMYILHLDLKP 215

Query: 206 INILL--DDNYTTKVCDFGASKLVPIDETQLSTMVQGTLGY 244
            NIL    D    K+ DFG ++       +L     GT  +
Sbjct: 216 ENILCVNRDAKQIKIIDFGLARRYK-PREKLKVNF-GTPEF 254

>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} PDB: 2qkr_A* Length = 311

 Score = 43.7 bits (104), Expect = 2e-05
 Identities = 31/149 (20%), Positives = 58/149 (38%), Gaps = 35/149 (23%)

Query: 104 NNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIE----QCINKVVVLSQINH 159
             Y     +G G YG V+    S  + +A+K+ R+   ++ E      I ++ +L +++H
Sbjct: 21  EKYQKLEKVGEGTYGVVYKAKDSQGRIVALKRIRL--DAEDEGIPSTAIREISLLKELHH 78

Query: 160 RNVVGLLGCCLETEVPLLVNEFVK--LPTISWEVRIRIAAETAEDIKSI----------- 206
            N+V L+          LV EF++  L  +  E +  +       IK             
Sbjct: 79  PNIVSLIDVIHSERCLTLVFEFMEKDLKKVLDENKTGL---QDSQIKIYLYQLLRGVAHC 135

Query: 207 -------------NILLDDNYTTKVCDFG 222
                        N+L++ +   K+ DFG
Sbjct: 136 HQHRILHRDLKPQNLLINSDGALKLADFG 164

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens} Length = 326

 Score = 43.8 bits (104), Expect = 2e-05
 Identities = 39/181 (21%), Positives = 57/181 (31%), Gaps = 46/181 (25%)

Query: 103 TNNYAYDRMIGRGGYGTVFLG-SLSDNKAIA---IKKSRIV---YQSQIEQCINKVVVLS 155
            + Y     +G G +  V      S     A   IKK R          E    +V +L 
Sbjct: 10  DDYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILK 69

Query: 156 QINHRNVVGLLGCCLETEVPL-LVNEFVKLPTISWEVRIRIAA-------ETAEDIKSI- 206
           +I H NV+ L     E +  + L+ E V       E+   +A        E  E +K I 
Sbjct: 70  EIQHPNVITLHEVY-ENKTDVILILELVA----GGELFDFLAEKESLTEEEATEFLKQIL 124

Query: 207 -------------------NILL----DDNYTTKVCDFGASKLVPIDETQLSTMVQGTLG 243
                              NI+L          K+ DFG +    ID       + GT  
Sbjct: 125 NGVYYLHSLQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHK--IDFGNEFKNIFGTPE 182

Query: 244 Y 244
           +
Sbjct: 183 F 183

>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A Length = 286

 Score = 43.2 bits (102), Expect = 3e-05
 Identities = 19/165 (11%), Positives = 47/165 (28%), Gaps = 31/165 (18%)

Query: 85  SGSSDTAKIFTAGELKIATNNYAYDRMIGRGGYGTVFLGSLSD---NKAIAIKKSRIVY- 140
           S   D  ++      +IA   Y      G       +     D   ++ +A+        
Sbjct: 14  SAPPDDVQLVPGA--RIANGRYRLLIFHGGVPPLQFWQAL--DTALDRQVALTFVDPQGV 69

Query: 141 --QSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEFVKLPTISWEVR------ 192
                +++ +++ + LS+I+   V  +L         L+V E+++  ++           
Sbjct: 70  LPDDVLQETLSRTLRLSRIDKPGVARVLDVVHTRAGGLVVAEWIRGGSLQEVADTSPSPV 129

Query: 193 --IRIAAETAE-------------DIKSINILLDDNYTTKVCDFG 222
             IR     A                    + +  +    +    
Sbjct: 130 GAIRAMQSLAAAADAAHRAGVALSIDHPSRVRVSIDGDVVLAYPA 174

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II} Length = 345

 Score = 42.5 bits (100), Expect = 6e-05
 Identities = 20/86 (23%), Positives = 34/86 (39%), Gaps = 6/86 (6%)

Query: 103 TNNYAYDRMIGRGGYGTVFLG-SLSDNKAIAIK-----KSRIVYQSQIEQCINKVVVLSQ 156
              Y     IG+G YG V +          AIK     K R +    +E+   +V ++ +
Sbjct: 25  QKKYHLKGAIGQGSYGVVRVAIENQTRAIRAIKIMNKNKIRQINPKDVERIKTEVRLMKK 84

Query: 157 INHRNVVGLLGCCLETEVPLLVNEFV 182
           ++H N+  L     + +   LV E  
Sbjct: 85  LHHPNIARLYEVYEDEQYICLVMELC 110

>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A* Length = 317

 Score = 42.6 bits (101), Expect = 6e-05
 Identities = 27/157 (17%), Positives = 54/157 (34%), Gaps = 42/157 (26%)

Query: 102 ATNNYAYDRMIGRGGYGTVFLG-SLSDNKAIAIKKSRIVYQSQIEQ-------CINKVVV 153
           +++ +     +G G Y TV+ G + +    +A+K+ +      ++         I ++ +
Sbjct: 3   SSSQFKQLEKLGNGTYATVYKGLNKTTGVYVALKEVK------LDSEEGTPSTAIREISL 56

Query: 154 LSQINHRNVVGLLGCCLETEVPLLVNEFVK--LPTI--SWEVRIRIAAETAEDIKSI--- 206
           + ++ H N+V L           LV EF+   L     S  V           +K     
Sbjct: 57  MKELKHENIVRLYDVIHTENKLTLVFEFMDNDLKKYMDSRTVGNTPRGLELNLVKYFQWQ 116

Query: 207 ---------------------NILLDDNYTTKVCDFG 222
                                N+L++     K+ DFG
Sbjct: 117 LLQGLAFCHENKILHRDLKPQNLLINKRGQLKLGDFG 153

>2r3i_A Cell division protein kinase 2; serine/threonine-protein kinase, cell cycle, inhibition, cyclin-dependent kinase, cancer, ATP-binding; HET: SCF; 1.28A {Homo sapiens} PDB: 2r3j_A* 2r3k_A* 2r3l_A* 2r3m_A* 2r3n_A* 2r3o_A* 2r3p_A* 2r3q_A* 1jvp_P* 1buh_A 1ckp_A* 1di8_A* 1dm2_A* 1f5q_A 1fin_A* 1fq1_B* 1fvt_A* 1fvv_A* 1g5s_A* 1gih_A* ... Length = 299

 Score = 42.1 bits (100), Expect = 8e-05
 Identities = 33/148 (22%), Positives = 55/148 (37%), Gaps = 31/148 (20%)

Query: 104 NNYAYDRMIGRGGYGTVFLG-SLSDNKAIAIKKSRIVYQSQIE----QCINKVVVLSQIN 158
            N+     IG G YG V+   +    + +A+KK R+   ++ E      I ++ +L ++N
Sbjct: 3   ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRL--DTETEGVPSTAIREISLLKELN 60

Query: 159 HRNVVGLLGCCLETEVPLLVNEFVKLPTISWEVRIRIAAETAEDIKSI------------ 206
           H N+V LL          LV EF+      +     +       IKS             
Sbjct: 61  HPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCH 120

Query: 207 ------------NILLDDNYTTKVCDFG 222
                       N+L++     K+ DFG
Sbjct: 121 SHRVLHRDLKPQNLLINTEGAIKLADFG 148

>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} Length = 405

 Score = 42.1 bits (99), Expect = 9e-05
 Identities = 30/151 (19%), Positives = 52/151 (34%), Gaps = 42/151 (27%)

Query: 112 IGRGGYGTVFLG---SLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGC 168
           +GRG YG V+        D+K  A+K+      S       ++ +L ++ H NV+ L   
Sbjct: 29  VGRGTYGHVYKAKRKDGKDDKDYALKQIEGTGISM--SACREIALLRELKHPNVISLQKV 86

Query: 169 CLE-TEVPL-LVNEFVK--LPTISWEVRIRIAAE-----TAEDIKSI------------- 206
            L   +  + L+ ++ +  L  I    R   A +         +KS+             
Sbjct: 87  FLSHADRKVWLLFDYAEHDLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLHA 146

Query: 207 -----------NILLDDNYTT----KVCDFG 222
                      NIL+          K+ D G
Sbjct: 147 NWVLHRDLKPANILVMGEGPERGRVKIADMG 177

>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A* Length = 432

 Score = 42.0 bits (99), Expect = 9e-05
 Identities = 22/98 (22%), Positives = 36/98 (36%), Gaps = 17/98 (17%)

Query: 79  LQLSKRSGSSDTAKIFTAGELKIATNNYAYDRMIGRGGYGTVFLGSLSD---NKAIAIKK 135
           +       S      F   +     +NY    +IGRG YG V+     D    K +AIKK
Sbjct: 1   MHHHHHHSSGRENLYFQGIKNVHVPDNYIIKHLIGRGSYGYVY--LAYDKNTEKNVAIKK 58

Query: 136 SRIVYQSQI-------EQCINKVVVLSQINHRNVVGLL 166
              +++  I       E  I     L+++    ++ L 
Sbjct: 59  VNRMFEDLIDCKRILREITI-----LNRLKSDYIIRLY 91

>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A Length = 292

 Score = 41.7 bits (99), Expect = 9e-05
 Identities = 32/150 (21%), Positives = 55/150 (36%), Gaps = 36/150 (24%)

Query: 104 NNYAYDRMIGRGGYGTVFLG-SLSDNKAIAIKKSRIVYQSQIE----QCINKVVVLSQIN 158
             Y     IG G YGTVF   +   ++ +A+K+ R+      E      + ++ +L ++ 
Sbjct: 2   QKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRL--DDDDEGVPSSALREICLLKELK 59

Query: 159 HRNVVGLLGCCLETEVPLLVNEFVK--LPTISWEVRIRIAAETAEDIKSI---------- 206
           H+N+V L       +   LV EF    L          +     E +KS           
Sbjct: 60  HKNIVRLHDVLHSDKKLTLVFEFCDQDLKKYFDSCNGDL---DPEIVKSFLFQLLKGLGF 116

Query: 207 --------------NILLDDNYTTKVCDFG 222
                         N+L++ N   K+ +FG
Sbjct: 117 CHSRNVLHRDLKPQNLLINRNGELKLANFG 146

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7 Length = 321

 Score = 41.5 bits (98), Expect = 1e-04
 Identities = 30/177 (16%), Positives = 55/177 (31%), Gaps = 46/177 (25%)

Query: 103 TNNYAYDRMIGRGGYGTVFLG-SLSDNKAIA---IKKSRIVYQSQIEQCINKVVVLSQIN 158
              Y     +GRG +G V      S  K      +K               ++ +L+   
Sbjct: 4   YEKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVKGT----DQVLVKKEISILNIAR 59

Query: 159 HRNVVGLLGCCLETEVPL-LVNEFVKLPTISWEVRIRIAAETAE---------------- 201
           HRN++ L     E+   L ++ EF+       ++  RI     E                
Sbjct: 60  HRNILHLHESF-ESMEELVMIFEFIS----GLDIFERINTSAFELNEREIVSYVHQVCEA 114

Query: 202 ------------DIKSINILL--DDNYTTKVCDFGASKLVPIDETQLSTMVQGTLGY 244
                       DI+  NI+     + T K+ +FG ++   +       ++     Y
Sbjct: 115 LQFLHSHNIGHFDIRPENIIYQTRRSSTIKIIEFGQARQ--LKPGDNFRLLFTAPEY 169

>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A Length = 288

 Score = 41.3 bits (98), Expect = 1e-04
 Identities = 30/149 (20%), Positives = 53/149 (35%), Gaps = 35/149 (23%)

Query: 104 NNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIE----QCINKVVVLSQINH 159
             Y     IG G YG V+    +  +  A+KK R+  + + E      I ++ +L ++ H
Sbjct: 2   EKYHGLEKIGEGTYGVVYKAQNNYGETFALKKIRL--EKEDEGIPSTTIREISILKELKH 59

Query: 160 RNVVGLLGCCLETEVPLLVNEFVK--LPTISWEVRIRIAAETAEDIKSI----------- 206
            N+V L       +  +LV E +   L  +       +    +   KS            
Sbjct: 60  SNIVKLYDVIHTKKRLVLVFEHLDQDLKKLLDVCEGGL---ESVTAKSFLLQLLNGIAYC 116

Query: 207 -------------NILLDDNYTTKVCDFG 222
                        N+L++     K+ DFG
Sbjct: 117 HDRRVLHRDLKPQNLLINREGELKIADFG 145

>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A* Length = 329

 Score = 41.5 bits (98), Expect = 1e-04
 Identities = 37/175 (21%), Positives = 64/175 (36%), Gaps = 36/175 (20%)

Query: 82  SKRSGSSDTAKIFTAGELKIATNNYAYDRM--IGRGGYGTVFLG-SLSDNKAIAIKKSRI 138
                 +      +      AT+   Y R+  +G G YG V+       N+ +AIK+ R+
Sbjct: 10  GTLEAQTQGPGSMSVSAAPSATSIDRYRRITKLGEGTYGEVYKAIDTVTNETVAIKRIRL 69

Query: 139 VYQSQIE----QCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEFV---------KLP 185
             + + E      I +V +L ++ HRN++ L           L+ E+          K P
Sbjct: 70  --EHEEEGVPGTAIREVSLLKELQHRNIIELKSVIHHNHRLHLIFEYAENDLKKYMDKNP 127

Query: 186 TISWEVRIRIAAETAE-------------DIKSINILLDDNYTT-----KVCDFG 222
            +S  V      +                D+K  N+LL  +  +     K+ DFG
Sbjct: 128 DVSMRVIKSFLYQLINGVNFCHSRRCLHRDLKPQNLLLSVSDASETPVLKIGDFG 182

>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii} Length = 458

 Score = 41.3 bits (97), Expect = 2e-04
 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 13/72 (18%)

Query: 103 TNNYAYDRMIGRGGYGTVFLGS-LSDNKAIAIKKSRIVYQSQI-------EQCINKVVVL 154
            + Y    +IG G YG V       + + +AIKK   V++  I       E  I     L
Sbjct: 52  PDRYEIRHLIGTGSYGHVCEAYDKLEKRVVAIKKILRVFEDLIDCKRILREIAI-----L 106

Query: 155 SQINHRNVVGLL 166
           +++NH +VV +L
Sbjct: 107 NRLNHDHVVKVL 118

>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens} Length = 320

 Score = 40.7 bits (96), Expect = 2e-04
 Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 9/69 (13%)

Query: 103 TNNYAYDRMIGRGGYGTVFLGSLSD---NKAIAIKKSRIVYQSQIE--QCINKVVVLSQI 157
            + Y   + +G GG G VF  S  D   +K +AIKK  IV          + ++ ++ ++
Sbjct: 10  GSRYMDLKPLGCGGNGLVF--SAVDNDCDKRVAIKK--IVLTDPQSVKHALREIKIIRRL 65

Query: 158 NHRNVVGLL 166
           +H N+V + 
Sbjct: 66  DHDNIVKVF 74

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A* Length = 327

 Score = 40.7 bits (96), Expect = 3e-04
 Identities = 37/173 (21%), Positives = 58/173 (33%), Gaps = 44/173 (25%)

Query: 109 DRMIGRGGYGTVFLG-SLSDNKAIAIK--KSRIVYQSQIEQCINKVVVLSQINHR-NVVG 164
            + +GRG +  V    S S  +  A K  K R   Q    + ++++ VL        V+ 
Sbjct: 34  SKELGRGKFAVVRQCISKSTGQEYAAKFLKKRRRGQDCRAEILHEIAVLELAKSCPRVIN 93

Query: 165 LLGCCLETEVPL-LVNEFVKLPTISWEVRIRIAAETAE---------------------- 201
           L     E    + L+ E+        E+      E AE                      
Sbjct: 94  LHEVY-ENTSEIILILEYAA----GGEIFSLCLPELAEMVSENDVIRLIKQILEGVYYLH 148

Query: 202 -------DIKSINILL---DDNYTTKVCDFGASKLVPIDETQLSTMVQGTLGY 244
                  D+K  NILL         K+ DFG S+ +     +L  ++ GT  Y
Sbjct: 149 QNNIVHLDLKPQNILLSSIYPLGDIKIVDFGMSRKIG-HACELREIM-GTPEY 199

>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens} Length = 324

 Score = 40.3 bits (95), Expect = 3e-04
 Identities = 31/151 (20%), Positives = 55/151 (36%), Gaps = 39/151 (25%)

Query: 104 NNYAYDRMIGRGGYGTVFLG-SLSDNKAIAIKKSRIVYQSQIEQ-----CINKVVVLSQI 157
             Y     +G G Y TV+ G S   +  +A+K+ R+    + E+      I +V +L  +
Sbjct: 2   ETYIKLDKLGEGTYATVYKGKSKLTDNLVALKEIRL----EHEEGAPCTAIREVSLLKDL 57

Query: 158 NHRNVVGLLGCCLETEVPLLVNEFVK--LPTISWEVRIRIAAETAEDIKSI--------- 206
            H N+V L       +   LV E++   L     +    I      ++K           
Sbjct: 58  KHANIVTLHDIIHTEKSLTLVFEYLDKDLKQYLDDCGNII---NMHNVKLFLFQLLRGLA 114

Query: 207 ---------------NILLDDNYTTKVCDFG 222
                          N+L+++    K+ DFG
Sbjct: 115 YCHRQKVLHRDLKPQNLLINERGELKLADFG 145

>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C Length = 400

 Score = 40.5 bits (95), Expect = 3e-04
 Identities = 32/179 (17%), Positives = 58/179 (32%), Gaps = 53/179 (29%)

Query: 106 YAYDRMIGRGGYGTVFLG-SLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQI-NHRNVV 163
               +++G G  G V    +    +  A+K   ++      +   +V +  +     ++V
Sbjct: 64  KVTSQVLGLGINGKVLQIFNKRTQEKFALK---ML--QDCPKARREVELHWRASQCPHIV 118

Query: 164 GLLGCCLETEVP-----LLVNEFVK---LPTISWEVRI----------RIAAETAE---- 201
            ++    E         L+V E +    L +     RI          R A+E  +    
Sbjct: 119 RIVDVY-ENLYAGRKCLLIVMECLDGGELFS-----RIQDRGDQAFTEREASEIMKSIGE 172

Query: 202 -------------DIKSINILL---DDNYTTKVCDFGASKLVPIDETQLSTMVQGTLGY 244
                        D+K  N+L      N   K+ DFG +K        L+T    T  Y
Sbjct: 173 AIQYLHSINIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETT-SHNSLTTPC-YTPYY 229

>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} Length = 362

 Score = 40.4 bits (95), Expect = 3e-04
 Identities = 18/75 (24%), Positives = 30/75 (40%), Gaps = 11/75 (14%)

Query: 103 TNNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKK-SRIVYQSQIEQCINKVV--------- 152
            + Y   R I  G YG V  G  S+   +AIK+    V   +    ++            
Sbjct: 21  QSPYTVQRFISSGSYGAVCAGVDSEGIPVAIKRVFNTVSDGRTVNILSDSFLCKRVLREI 80

Query: 153 -VLSQINHRNVVGLL 166
            +L+  +H N++GL 
Sbjct: 81  RLLNHFHHPNILGLR 95

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* Length = 351

 Score = 39.9 bits (94), Expect = 5e-04
 Identities = 36/173 (20%), Positives = 67/173 (38%), Gaps = 46/173 (26%)

Query: 91  AKIFTAGELKIATNNYAYDRM--IGRGGYGTVFLG-SLSDNKAIAIKKSRIVYQSQIE-- 145
           AK + + E         Y+++  IG+G +G VF        + +A+KK  +  +++ E  
Sbjct: 2   AKQYDSVECPFCDEVSKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLM--ENEKEGF 59

Query: 146 --QCINKVVVLSQINHRNVVGLLGCCLETEVPL--------LVNEFVK--LPTISWEVRI 193
               + ++ +L  + H NVV L+  C     P         LV +F +  L  +   V +
Sbjct: 60  PITALREIKILQLLKHENVVNLIEICRTKASPYNRCKGSIYLVFDFCEHDLAGLLSNVLV 119

Query: 194 RIAAETAEDIKSI------------------------NILLDDNYTTKVCDFG 222
           +    T  +IK +                        N+L+  +   K+ DFG
Sbjct: 120 KF---TLSEIKRVMQMLLNGLYYIHRNKILHRDMKAANVLITRDGVLKLADFG 169

>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II} Length = 383

 Score = 39.3 bits (92), Expect = 7e-04
 Identities = 14/67 (20%), Positives = 30/67 (44%), Gaps = 5/67 (7%)

Query: 103 TNNYAYDRMIGRGGYGTVFLGSLSD-NKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRN 161
           +  Y+  + +G G +G V      +  K  A+KK   V Q        ++ ++  ++H N
Sbjct: 6   SKKYSLGKTLGTGSFGIVCEVFDIESGKRFALKK---VLQDP-RYKNRELDIMKVLDHVN 61

Query: 162 VVGLLGC 168
           ++ L+  
Sbjct: 62  IIKLVDY 68

>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} Length = 308

 Score = 39.1 bits (92), Expect = 8e-04
 Identities = 37/162 (22%), Positives = 50/162 (30%), Gaps = 54/162 (33%)

Query: 108 YDRM--IGRGGYGTVFLG-SLSDNKAIAIKKSRIVYQSQIEQCINKVVV--------LSQ 156
           Y+ +  IG G YGTV+          +A+K  R+         +    V        L  
Sbjct: 11  YEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGGGGGGGLPISTVREVALLRRLEA 70

Query: 157 INHRNVVGLLGCCLETEVPL-----LVNEFV-----------KLPTISWEV--------- 191
             H NVV L+  C  +         LV E V             P +  E          
Sbjct: 71  FEHPNVVRLMDVCATSRTDREIKVTLVFEHVDQDLRTYLDKAPPPGLPAETIKDLMRQFL 130

Query: 192 ---------RI--RIAAETAEDIKSINILLDDNYTTKVCDFG 222
                     I  R       D+K  NIL+    T K+ DFG
Sbjct: 131 RGLDFLHANCIVHR-------DLKPENILVTSGGTVKLADFG 165

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	256
4asz_A	299	BDNF/NT-3 growth factors receptor; transferase, TR	100.0
4aoj_A	329	High affinity nerve growth factor receptor; transf	100.0
4fih_A	346	Serine/threonine-protein kinase PAK 4; kinase doma	99.98
4gt4_A	308	Tyrosine-protein kinase transmembrane receptor RO;	99.97
3omv_A	307	RAF proto-oncogene serine/threonine-protein kinas;	99.97
4aw0_A	311	HPDK1, 3-phosphoinositide-dependent protein kinase	99.97
4fie_A	423	Serine/threonine-protein kinase PAK 4; kinase doma	99.97
4b9d_A	350	Serine/threonine-protein kinase NEK1; transferase,	99.97
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	99.97
4ase_A	353	Vascular endothelial growth factor receptor 2; tra	99.97
3fpq_A	290	Serine/threonine-protein kinase WNK1; protein seri	99.97
3hyh_A	275	Carbon catabolite-derepressing protein kinase; kin	99.97
3ubd_A	304	Ribosomal protein S6 kinase alpha-3; kinase-inhibi	99.97
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	99.96
3hmm_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	99.96
4b99_A	398	Mitogen-activated protein kinase 7; transferase, i	99.95
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	99.95
4f9c_A	361	Cell division cycle 7-related protein kinase; Ser/	99.94
3v5w_A	689	G-protein coupled receptor kinase 2; inhibitor com	99.94
4aw2_A	437	Serine/threonine-protein kinase MRCK alpha; transf	99.93
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	99.93
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	99.92
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	99.92
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	99.92
3zgw_A	347	Maternal embryonic leucine zipper kinase; transfer	99.92
1o6l_A	337	RAC-beta serine/threonine protein kinase; protein	99.92
2vd5_A	412	DMPK protein; serine/threonine-protein kinase, kin	99.92
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	99.92
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	99.92
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	99.92
3v8s_A	410	RHO-associated protein kinase 1; dimerization, myo	99.92
3txo_A	353	PKC-L, NPKC-ETA, protein kinase C ETA type; phosph	99.92
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	99.91
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	99.91
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	99.91
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	99.91
3o0g_A	292	Cell division protein kinase 5; kinase activator c	99.91
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	99.91
4dc2_A	396	Protein kinase C IOTA type; kinase, substrate, cel	99.91
1xjd_A	345	Protein kinase C, theta type; PKC-theta, ATP, AMP,	99.91
3niz_A	311	Rhodanese family protein; structural genomics, str	99.91
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	99.91
1fot_A	318	TPK1 delta, CAMP-dependent protein kinase type 1;	99.91
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	99.91
4hcu_A	269	Tyrosine-protein kinase ITK/TSK; transferase-trans	99.9
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	99.9
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	99.9
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	99.9
3a8x_A	345	Protein kinase C IOTA type; transferase; HET: TPO;	99.9
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	99.9
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	99.9
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	99.9
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	99.9
3a62_A	327	Ribosomal protein S6 kinase beta-1; kinase domain,	99.9
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	99.9
1ob3_A	288	PFPK5, cell division control protein 2 homolog; tr	99.9
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	99.9
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	99.9
1rdq_E	350	PKA C-alpha, CAMP-dependent protein kinase, alpha-	99.9
3rp9_A	458	Mitogen-activated protein kinase; structural genom	99.9
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	99.9
2i0e_A	353	Protein kinase C-beta II; serine/threonine protein	99.9
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	99.9
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	99.9
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	99.9
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	99.9
4fr4_A	384	YANK1, serine/threonine-protein kinase 32A; struct	99.9
3ttj_A	464	Mitogen-activated protein kinase 10; JNK3, protein	99.9
3n9x_A	432	Phosphotransferase; malaria kinase, structural gen	99.9
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	99.9
2zv2_A	298	Calcium/calmodulin-dependent protein kinase kinas;	99.9
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	99.9
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	99.9
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	99.9
2pmi_A	317	Negative RE, cyclin-dependent protein kinase PHO85	99.89
2r5t_A	373	Serine/threonine-protein kinase SGK1; AGC protein	99.89
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	99.89
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	99.89
3h4j_B	336	AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin	99.89
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	99.89
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	99.89
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	99.89
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	99.89
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	99.89
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	99.89
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	99.89
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	99.89
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	99.89
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	99.89
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	99.89
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	99.89
3oz6_A	388	Mitogen-activated protein kinase 1, serine/threon	99.89
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	99.89
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	99.89
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	99.89
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	99.89
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	99.89
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	99.89
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	99.89
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	99.89
3ork_A	311	Serine/threonine protein kinase; structural genomi	99.89
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	99.88
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	99.88
3soc_A	322	Activin receptor type-2A; structural genomics cons	99.88
3llt_A	360	Serine/threonine kinase-1, pflammer; lammer kinase	99.88
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	99.88
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	99.88
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	99.88
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	99.88
2xrw_A	371	Mitogen-activated protein kinase 8; transcription,	99.88
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	99.88
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	99.88
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	99.88
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	99.88
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	99.88
2vuw_A	336	Serine/threonine-protein kinase haspin; cell cycle	99.88
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	99.88
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	99.88
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	99.88
3gbz_A	329	Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-	99.88
3mtl_A	324	Cell division protein kinase 16; pctaire1, indirub	99.88
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	99.88
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	99.88
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	99.88
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	99.88
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	99.88
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	99.88
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	99.88
3qyz_A	364	Mitogen-activated protein kinase 1; transferase, s	99.87
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	99.87
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	99.87
2eue_A	275	Carbon catabolite derepressing protein kinase; kin	99.87
3pg1_A	362	Mitogen-activated protein kinase, putative (MAP K	99.87
2izr_A	330	Casein kinase I isoform gamma-3; serine/threonine-	99.87
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	99.87
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	99.87
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	99.87
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	99.87
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	99.87
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	99.87
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	99.87
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	99.87
3uc3_A	361	Serine/threonine-protein kinase SRK2I; SNRK2, ABA	99.87
3q4u_A	301	Activin receptor type-1; structural genomics conso	99.87
1ua2_A	346	CAK, cell division protein kinase 7; cell cycle, p	99.87
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	99.87
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	99.87
1vzo_A	355	Ribosomal protein S6 kinase alpha 5; protein kinas	99.87
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	99.87
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	99.87
3g33_A	308	Cell division protein kinase 4; Ser/Thr protein ki	99.87
1cm8_A	367	Phosphorylated MAP kinase P38-gamma; phosphorylati	99.87
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	99.87
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	99.87
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	99.87
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	99.87
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	99.87
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	99.87
3eb0_A	383	Putative uncharacterized protein; kinase cryptospo	99.87
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	99.86
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	99.86
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	99.86
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	99.86
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	99.86
2b9h_A	353	MAP kinase FUS3, mitogen-activated protein kinase	99.86
3bhy_A	283	Death-associated protein kinase 3; death associate	99.86
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	99.86
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	99.86
3an0_A	340	Dual specificity mitogen-activated protein kinase;	99.86
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	99.86
2fst_X	367	Mitogen-activated protein kinase 14; active mutant	99.86
4exu_A	371	Mitogen-activated protein kinase 13; P38 kinase, t	99.86
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	99.86
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	99.86
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	99.86
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	99.86
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	99.86
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	99.86
3aln_A	327	Dual specificity mitogen-activated protein kinase;	99.86
4fl3_A	635	Tyrosine-protein kinase SYK; transferase; HET: ANP	99.86
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	99.86
2r3i_A	299	Cell division protein kinase 2; serine/threonine-p	99.86
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	99.86
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.86
3fme_A	290	Dual specificity mitogen-activated protein kinase;	99.86
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	99.86
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	99.86
3nsz_A	330	CK II alpha, casein kinase II subunit alpha; inhib	99.86
3pls_A	298	Macrophage-stimulating protein receptor; protein k	99.86
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	99.86
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	99.86
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	99.86
3kvw_A	429	DYRK2, dual specificity tyrosine-phosphorylation-r	99.86
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	99.86
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	99.86
1nxk_A	400	MAP kinase-activated protein kinase 2; MK2, phosph	99.86
2i6l_A	320	Mitogen-activated protein kinase 6; MAPK6, ERK3, e	99.86
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	99.86
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	99.85
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	99.85
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	99.85
3op5_A	364	Serine/threonine-protein kinase VRK1; adenosine tr	99.85
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	99.85
2a19_B	284	Interferon-induced, double-stranded RNA-activated	99.85
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	99.85
3rgf_A	405	Cyclin-dependent kinase 8; protein kinase complex,	99.85
3coi_A	353	Mitogen-activated protein kinase 13; P38D, P38delt	99.85
3e3p_A	360	Protein kinase, putative glycogen synthase kinase;	99.85
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	99.85
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	99.85
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	99.85
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	99.85
1csn_A	298	Casein kinase-1; phosphotransferase; HET: ATP; 2.0	99.85
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	99.85
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	99.85
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	99.85
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	99.85
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	99.84
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	99.84
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	99.84
2v62_A	345	Serine/threonine-protein kinase VRK2; transferase,	99.84
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	99.84
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	99.84
1blx_A	326	Cyclin-dependent kinase 6; inhibitor protein, cycl	99.84
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	99.84
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	99.83
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	99.83
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	99.83
2dyl_A	318	Dual specificity mitogen-activated protein kinase	99.83
2jii_A	352	Serine/threonine-protein kinase VRK3 molecule: VA	99.83
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.83
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	99.83
2vx3_A	382	Dual specificity tyrosine-phosphorylation- regula	99.83
1wak_A	397	Serine/threonine-protein kinase SPRK1; SRPK, trans	99.83
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	99.83
4hgt_A	296	Casein kinase I isoform delta; CK1D, inhibitor, tr	99.83
1z57_A	339	Dual specificity protein kinase CLK1; protein tyro	99.83
3uzp_A	296	CKI-delta, CKID, casein kinase I isoform delta; CK	99.82
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	99.82
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	99.82
2eu9_A	355	Dual specificity protein kinase CLK3; kinase domai	99.82
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	99.81
3sv0_A	483	Casein kinase I-like; typical kinase domain fold,	99.81
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	99.81
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	99.8
3uqc_A	286	Probable conserved transmembrane protein; structur	99.8
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	99.79
1q8y_A	373	SR protein kinase; transferase; HET: ADP ADE; 2.05	99.79
3fhr_A	336	MAP kinase-activated protein kinase 3; kinase-inhi	99.78
3m2w_A	299	MAP kinase-activated protein kinase 2; small molec	99.77
1zar_A	282	RIO2 kinase; serine kinase, winged-helix, RIO doma	99.76
3en9_A	540	Glycoprotease, O-sialoglycoprotein endopeptidase/p	99.75
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	99.7
1zth_A	258	RIO1 serine protein kinase; ribosome biogenesis, r	99.59
4gyi_A	397	RIO2 kinase; protein kinase, ADP complex, phosphoa	99.39
3tm0_A	263	Aminoglycoside 3'-phosphotransferase; protein kina	98.8
1nd4_A	264	Aminoglycoside 3'-phosphotransferase; protein kina	98.69
3d1u_A	288	Putative fructosamine-3-kinase; YP_290396.1, struc	98.37
3dxp_A	359	Putative acyl-COA dehydrogenase; protein kinase-li	98.23
4gkh_A	272	Aminoglycoside 3'-phosphotransferase APHA1-IAB; py	97.84
3f7w_A	288	Putative fructosamine-3-kinase; YP_290396.1, struc	97.8
3r70_A	320	Aminoglycoside phosphotransferase; structural geno	97.74
3jr1_A	312	Putative fructosamine-3-kinase; YP_719053.1, struc	97.37
3sg8_A	304	APH(2'')-ID; antibiotic resistance enzyme, transfe	97.36
3tdw_A	306	Gentamicin resistance protein; kinase, phosphoryl	97.31
3ovc_A	362	Hygromycin-B 4-O-kinase; aminoglycoside phosphotra	97.06
2q83_A	346	YTAA protein; 2635576, structural genomics, joint	96.61
3ats_A	357	Putative uncharacterized protein; hypothetical pro	96.26
2ppq_A	322	HSK, HK, homoserine kinase; structural genomics, M	95.92
1zyl_A	328	Hypothetical protein YIHE; putative protein kinase	95.76
3feg_A	379	Choline/ethanolamine kinase; non-protein kinase, c	95.11
3dxq_A	301	Choline/ethanolamine kinase family protein; NP_106	94.69
2jwa_A	44	Receptor tyrosine-protein kinase ERBB-2; transmemb	94.45
3i1a_A	339	Spectinomycin phosphotransferase; protein kinase,	94.44
1nw1_A	429	Choline kinase (49.2 KD); phospholipid synthesis,	93.91
2ks1_B	44	Epidermal growth factor receptor; ERBB1, ERBB2, tr	93.81
2olc_A	397	MTR kinase, methylthioribose kinase; kinase ADP-2H	93.0
2k1k_A	38	Ephrin type-A receptor 1; EPHA1, receptor tyrosine	92.74
2l2t_A	44	Receptor tyrosine-protein kinase ERBB-4; transmemb	92.54
3f2s_A	401	CK, chetk-alpha, choline kinase alpha; non-protein	91.23
3cxl_A	463	N-chimerin; SH2, RHO-GAP, structural genomics cons	90.55
2qg7_A	458	Ethanolamine kinase PV091845; malaria, SGC, struct	90.09
3c5i_A	369	Choline kinase; choline, kinase, malaria, transfer	89.79
2pyw_A	420	Uncharacterized protein; 5-methylthioribose kinase	83.35
3csv_A	333	Aminoglycoside phosphotransferase; YP_614837.1, ph	81.61

>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*

Probab=100.00  E-value=8.6e-34  Score=237.82  Aligned_cols=156  Identities=22%  Similarity=0.363  Sum_probs=130.6

Q ss_pred             hhcCCCcccceeeeeCceEEEEEEEC------CCcEEEEEEecccChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCE
Q 047066          101 IATNNYAYDRMIGRGGYGTVFLGSLS------DNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEV  174 (256)
Q Consensus       101 ~~~~~~~~~~~lg~G~~g~V~~~~~~------~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~  174 (256)
                      +.+++|.+.+.||+|+||+||+|.+.      ++..||||.++.......++|.+|+.+|++++|||||+++|+|.+++.
T Consensus        10 I~r~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~   89 (299)
T 4asz_A           10 IKRHNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVEGDP   89 (299)
T ss_dssp             CCGGGEEEEEEEEC--CCCEEEEEECSCC----CEEEEEEEECSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSS
T ss_pred             cCHHHeEEeeEEeeCCCcEEEEEEECCcccCCCCEEEEEEEeCCCChHHHHHHHHHHHHHHhCCCCCCccEEEEEeeCCE
Confidence            45578899999999999999999863      467899999987777777889999999999999999999999999999


Q ss_pred             EEEEEecCCCCCC-----------------------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEE
Q 047066          175 PLLVNEFVKLPTI-----------------------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKV  218 (256)
Q Consensus       175 ~~lv~e~~~~~~l-----------------------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki  218 (256)
                      .++|||||++|+|                       ++...+.++.|++             |||||+|||+++++.+||
T Consensus        90 ~~lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~iiHRDlKp~NILl~~~~~~Ki  169 (299)
T 4asz_A           90 LIMVFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMVYLASQHFVHRDLATRNCLVGENLLVKI  169 (299)
T ss_dssp             EEEEEECCTTCBHHHHHHHTSHHHHHC----CCCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGGCEEE
T ss_pred             EEEEEEcCCCCcHHHHHHhcCcccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHhCCcccCccCHhhEEECCCCcEEE
Confidence            9999999998764                       5666778888877             699999999999999999


Q ss_pred             EecCCceecCCCCcee-eeeeeecccc----cccccCCCCCCC
Q 047066          219 CDFGASKLVPIDETQL-STMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       219 ~DFGla~~~~~~~~~~-~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      +|||+|+......... .....||+.|    .+.++.+|.|+|
T Consensus       170 ~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~k~D  212 (299)
T 4asz_A          170 GDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESD  212 (299)
T ss_dssp             CCCSCHHHHTGGGCEEETTTEEECGGGCCHHHHHHCCCCHHHH
T ss_pred             CCcccceecCCCCceeecCceecChhhcCHHHHcCCCCCchhh
Confidence            9999999775443332 2345799999    677888998887

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}

Probab=100.00  E-value=3.9e-33  Score=236.84  Aligned_cols=156  Identities=20%  Similarity=0.346  Sum_probs=124.3

Q ss_pred             hhcCCCcccceeeeeCceEEEEEEEC------CCcEEEEEEecccChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCE
Q 047066          101 IATNNYAYDRMIGRGGYGTVFLGSLS------DNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEV  174 (256)
Q Consensus       101 ~~~~~~~~~~~lg~G~~g~V~~~~~~------~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~  174 (256)
                      +.++++.+.+.||+|+||+||+|.++      ++..||||.++.......++|.+|+.+|++++|||||+++|+|.+.+.
T Consensus        38 i~~~d~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~  117 (329)
T 4aoj_A           38 IKRRDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRFFGVCTEGRP  117 (329)
T ss_dssp             CCGGGEEEEEEEEECSSEEEEEEEESSSCC---CEEEEEEEESCCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSS
T ss_pred             cCHHHeEEEEEEccCCCcEEEEEEECCcccCCCCeEEEEEEECcCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCE
Confidence            44567888899999999999999864      478899999987777777889999999999999999999999999999


Q ss_pred             EEEEEecCCCCCC-------------------------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcE
Q 047066          175 PLLVNEFVKLPTI-------------------------SWEVRIRIAAETA-------------EDIKSINILLDDNYTT  216 (256)
Q Consensus       175 ~~lv~e~~~~~~l-------------------------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~  216 (256)
                      .++|||||++|+|                         ++...+.++.|++             |||||+|||+++++.+
T Consensus       118 ~~lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~iiHRDLKp~NILl~~~~~~  197 (329)
T 4aoj_A          118 LLMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLAGLHFVHRDLATRNCLVGQGLVV  197 (329)
T ss_dssp             EEEEEECCTTCBHHHHHHTSSCC-----------CCSCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEETTTEE
T ss_pred             EEEEEEcCCCCcHHHHHHhcCcccccccccccccCCCCCHHHHHHHHHHHHHHHHHHhcCCeecccccHhhEEECCCCcE
Confidence            9999999998764                         5666778888876             6999999999999999


Q ss_pred             EEEecCCceecCCCCce-eeeeeeecccc----cccccCCCCCCC
Q 047066          217 KVCDFGASKLVPIDETQ-LSTMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       217 ki~DFGla~~~~~~~~~-~~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      ||+|||+|+.+...... ..+..+||+.|    .+.++.+|.+||
T Consensus       198 Ki~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~~sD  242 (329)
T 4aoj_A          198 KIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESD  242 (329)
T ss_dssp             EECCCC----------------CCCCGGGCCHHHHTTCCCCHHHH
T ss_pred             EEcccccceeccCCCcceecCcccccccccChhhhcCCCCCcccc
Confidence            99999999977544332 23446799999    677888888877

>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*

Probab=99.98  E-value=2.4e-32  Score=232.45  Aligned_cols=153  Identities=24%  Similarity=0.286  Sum_probs=129.4

Q ss_pred             cCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEec
Q 047066          103 TNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEF  181 (256)
Q Consensus       103 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~  181 (256)
                      .+.|++.+.||+|+||+||+|..+ +|+.||||++........+.+.+|+.+|+.++|||||++++++.+.+.+|+||||
T Consensus        73 ~~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~ivmEy  152 (346)
T 4fih_A           73 RSYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEF  152 (346)
T ss_dssp             GGTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCSSGGGGHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEECC
T ss_pred             hHhcEEeEEeecCcCeEEEEEEECCCCCEEEEEEEecCchhHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEeC
Confidence            456999999999999999999976 6899999998755544556788999999999999999999999999999999999


Q ss_pred             CCCCC---------CCHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceeeeeee
Q 047066          182 VKLPT---------ISWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQ  239 (256)
Q Consensus       182 ~~~~~---------l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~~~~  239 (256)
                      |++|+         +++.....++.|++             |||||+|||++.++.+||+|||+|+.+..+... .+..+
T Consensus       153 ~~gg~L~~~l~~~~l~e~~~~~~~~qi~~aL~ylH~~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~~~-~~~~~  231 (346)
T 4fih_A          153 LEGGALTDIVTHTRMNEEQIAAVCLAVLQALSVLHAQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPR-RKSLV  231 (346)
T ss_dssp             CTTEEHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTCCEEECCCTTCEECCSSSCC-BCCCC
T ss_pred             CCCCcHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCcccccCCHHHEEECCCCCEEEecCcCceecCCCCCc-ccccc
Confidence            99866         45666666776665             799999999999999999999999987644332 34567


Q ss_pred             ecccc----cccccCCCCCCC
Q 047066          240 GTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       240 Gt~~y----~~~~~~~t~ksD  256 (256)
                      ||+.|    .+.+..|+.++|
T Consensus       232 GTp~YmAPEvl~~~~y~~~~D  252 (346)
T 4fih_A          232 GTPYWMAPELISRLPYGPEVD  252 (346)
T ss_dssp             SCGGGCCHHHHTTCCBCTHHH
T ss_pred             cCcCcCCHHHHCCCCCCcHHH
Confidence            99999    666777888876

>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A

Probab=99.97  E-value=5.5e-33  Score=233.83  Aligned_cols=155  Identities=18%  Similarity=0.266  Sum_probs=127.3

Q ss_pred             hcCCCcccceeeeeCceEEEEEEEC------CCcEEEEEEecccC-hhHHHHHHHHHHHHHhCCCCcccceeeEEEECCE
Q 047066          102 ATNNYAYDRMIGRGGYGTVFLGSLS------DNKAIAIKKSRIVY-QSQIEQCINKVVVLSQINHRNVVGLLGCCLETEV  174 (256)
Q Consensus       102 ~~~~~~~~~~lg~G~~g~V~~~~~~------~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~  174 (256)
                      ..+++++.+.||+|+||+||+|.+.      +++.||||.++... ....++|.+|+.++++++|||||+++|+|.+++.
T Consensus        24 ~~~~~~~~~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~~~~  103 (308)
T 4gt4_A           24 SLSAVRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNVVCLLGVVTKDQP  103 (308)
T ss_dssp             CGGGEEEEEEEEECSSCEEEEEEEC-------CEEEEEEECCC-CCC-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSS
T ss_pred             CHHHCeEeeEeccCCCcEEEEEEEcCCccCCCCeEEEEEEECcccChHHHHHHHHHHHHHHhCCCCCCCCcceEEEECCE
Confidence            3456778899999999999999863      46789999986543 3445789999999999999999999999999999


Q ss_pred             EEEEEecCCCCCC--------------------------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCc
Q 047066          175 PLLVNEFVKLPTI--------------------------SWEVRIRIAAETA-------------EDIKSINILLDDNYT  215 (256)
Q Consensus       175 ~~lv~e~~~~~~l--------------------------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~  215 (256)
                      .++|||||++|+|                          ++...++++.|+|             |||||+|||+++++.
T Consensus       104 ~~lV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~iiHRDLK~~NILl~~~~~  183 (308)
T 4gt4_A          104 LSMIFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQIAAGMEYLSSHHVVHKDLATRNVLVYDKLN  183 (308)
T ss_dssp             CEEEEECCSSCBHHHHHHTTCSSCCCC-----CCEECCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGGC
T ss_pred             EEEEEEcCCCCcHHHHHHhhCccccccccccccccccCCCHHHHHHHHHHHHHHHHHHHhCCCCCCCccccceEECCCCC
Confidence            9999999998765                          4556677888877             699999999999999


Q ss_pred             EEEEecCCceecCCCCce-eeeeeeecccc----cccccCCCCCCC
Q 047066          216 TKVCDFGASKLVPIDETQ-LSTMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       216 ~ki~DFGla~~~~~~~~~-~~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      +||+|||+|+.+...... ..+..+||+.|    .+.++.+|.|||
T Consensus       184 ~Ki~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~~s~ksD  229 (308)
T 4gt4_A          184 VKISDLGLFREVYAADYYKLLGNSLLPIRWMAPEAIMYGKFSIDSD  229 (308)
T ss_dssp             EEECCSCCBCGGGGGGCBCSSSSSCBCGGGCCHHHHHHCCCCHHHH
T ss_pred             EEECCcccceeccCCCceeEecccccCCcccCHHHHhCCCCCccch
Confidence            999999999977543222 23445799999    677889998887

>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}

Probab=99.97  E-value=2.5e-32  Score=229.29  Aligned_cols=157  Identities=24%  Similarity=0.353  Sum_probs=123.8

Q ss_pred             HHHHhhcCCCcccceeeeeCceEEEEEEECCCcEEEEEEeccc--ChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCE
Q 047066           97 GELKIATNNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIV--YQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEV  174 (256)
Q Consensus        97 ~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~  174 (256)
                      ..|++..+++++.+.||+|+||+||+|.+++  .||||.++..  .....+.|.+|+.++++++|||||+++|++.. +.
T Consensus        29 ~~Wei~~~~l~l~~~iG~G~fG~Vy~~~~~~--~vAvK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~-~~  105 (307)
T 3omv_A           29 YYWEIEASEVMLSTRIGSGSFGTVYKGKWHG--DVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMTK-DN  105 (307)
T ss_dssp             CCCBCCTTSCCEEEECCCCSSSEEEEEESSS--EEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECS-SS
T ss_pred             cCcEEcHHHeEEeeEEeeCCCcEEEEEEECC--cEEEEEEEecCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEC-Ce
Confidence            3577888999999999999999999998743  5899988643  34556789999999999999999999998864 56


Q ss_pred             EEEEEecCCCCC-----------CCHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCC
Q 047066          175 PLLVNEFVKLPT-----------ISWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPID  230 (256)
Q Consensus       175 ~~lv~e~~~~~~-----------l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~  230 (256)
                      +++|||||++|+           +++...+.++.|+|             |||||+|||+++++.+||+|||+|+.....
T Consensus       106 ~~iVmEy~~gGsL~~~l~~~~~~l~~~~~~~i~~qia~gL~yLH~~~IiHRDlKp~NILl~~~~~~Ki~DFGla~~~~~~  185 (307)
T 3omv_A          106 LAIVTQWCEGSSLYKHLHVQETKFQMFQLIDIARQTAQGMDYLHAKNIIHRDMKSNNIFLHEGLTVKIGDFGLATVKSRW  185 (307)
T ss_dssp             CEEEEECCSSCBHHHHHHTSCCCCCHHHHHHHHHHHHHHHHHHHHTTCBCSCCCSSSEEEETTEEEEECCCSSCBC----
T ss_pred             EEEEEEcCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHCCccCCccCHHHEEECCCCcEEEeeccCceecccC
Confidence            899999999866           46777788888877             699999999999999999999999976543


Q ss_pred             Cc-eeeeeeeecccc----ccc---ccCCCCCCC
Q 047066          231 ET-QLSTMVQGTLGY----YLH---TSQGTLNKE  256 (256)
Q Consensus       231 ~~-~~~~~~~Gt~~y----~~~---~~~~t~ksD  256 (256)
                      .. ...+..+||+.|    .+.   .+.||.|||
T Consensus       186 ~~~~~~~~~~GT~~ymAPE~l~~~~~~~y~~ksD  219 (307)
T 3omv_A          186 SGSQQVEQPTGSVLWMAPEVIRMQDNNPFSFQSD  219 (307)
T ss_dssp             --------CCCCTTSCCHHHHHCCSSCCCCHHHH
T ss_pred             CcceeecccccCCCccCHHHhhccCCCCCCcHHH
Confidence            22 233456799999    332   456888877

>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...

Probab=99.97  E-value=4.1e-32  Score=227.80  Aligned_cols=153  Identities=20%  Similarity=0.315  Sum_probs=127.0

Q ss_pred             CCCcccceeeeeCceEEEEEEEC-CCcEEEEEEeccc---ChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEE
Q 047066          104 NNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIV---YQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVN  179 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~  179 (256)
                      ++|++.+.||+|+||+||+|..+ +++.||+|.+...   .....+.+.+|+++|+.++|||||++++++.+.+.+++||
T Consensus        32 ~dy~i~~~lG~G~fg~V~~a~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~yivm  111 (311)
T 4aw0_A           32 EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFGL  111 (311)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             cccEEEEEEecccCeEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEE
Confidence            57999999999999999999975 6899999998643   2334578999999999999999999999999999999999


Q ss_pred             ecCCCCCC----------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCc-eee
Q 047066          180 EFVKLPTI----------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDET-QLS  235 (256)
Q Consensus       180 e~~~~~~l----------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~-~~~  235 (256)
                      |||++|+|          ++.....++.|++             |||||+|||++.++.+||+|||+|+.+..... ...
T Consensus       112 Ey~~gG~L~~~i~~~~~l~e~~~~~~~~qi~~al~ylH~~~IiHRDlKPeNILl~~~g~vKl~DFGla~~~~~~~~~~~~  191 (311)
T 4aw0_A          112 SYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARA  191 (311)
T ss_dssp             CCCTTEEHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTSCEEECCCTTCEECCTTTTCCCB
T ss_pred             ecCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCCccCCCCHHHeEEcCCCCEEEEEcCCceecCCCCCcccc
Confidence            99999664          5555566666655             79999999999999999999999998764332 334


Q ss_pred             eeeeecccc----cccccCCCCCCC
Q 047066          236 TMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       236 ~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      ...+||+.|    .+.+..++.++|
T Consensus       192 ~~~~GTp~YmAPEvl~~~~y~~~~D  216 (311)
T 4aw0_A          192 NSFVGTAQYVSPELLTEKSACKSSD  216 (311)
T ss_dssp             CCCCSCGGGCCHHHHHHSCBCHHHH
T ss_pred             cCcccCcccCCHHHHcCCCCCcHHH
Confidence            567899999    555666777665

>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}

Probab=99.97  E-value=1.6e-31  Score=232.79  Aligned_cols=153  Identities=24%  Similarity=0.286  Sum_probs=129.5

Q ss_pred             cCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEec
Q 047066          103 TNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEF  181 (256)
Q Consensus       103 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~  181 (256)
                      .+.|++.+.||+|+||.||+|..+ +|+.||||++........+.+.+|+.+|+.++|||||++++++.+.+.+|+||||
T Consensus       150 ~~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~iVmEy  229 (423)
T 4fie_A          150 RSYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEF  229 (423)
T ss_dssp             GGTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESTTCSSGGGHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred             hHhcEeeeEeccCcCcEEEEEEECCCCCEEEEEEEeccchhHHHHHHHHHHHHHhCCCCCCCceEEEEEECCEEEEEEeC
Confidence            457999999999999999999975 6899999998765555556789999999999999999999999999999999999


Q ss_pred             CCCCCC---------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceeeeeee
Q 047066          182 VKLPTI---------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQ  239 (256)
Q Consensus       182 ~~~~~l---------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~~~~  239 (256)
                      |++|+|         ++.....++.|++             |||||+|||++.++.+||+|||+|+.+...... .+..+
T Consensus       230 ~~gG~L~~~i~~~~l~e~~~~~~~~qil~aL~ylH~~~IiHRDiKp~NILl~~~g~vKl~DFGla~~~~~~~~~-~~~~~  308 (423)
T 4fie_A          230 LEGGALTDIVTHTRMNEEQIAAVCLAVLQALSVLHAQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPR-RKSLV  308 (423)
T ss_dssp             CTTEEHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSTTTEEECTTCCEEECCCTTCEECCSSCCC-BCCCE
T ss_pred             CCCCcHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHCCeecccCCHHHEEEcCCCCEEEecCccceECCCCCcc-ccccc
Confidence            999664         5555566666655             799999999999999999999999987644332 34568


Q ss_pred             ecccc----cccccCCCCCCC
Q 047066          240 GTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       240 Gt~~y----~~~~~~~t~ksD  256 (256)
                      ||+.|    .+.+..|+.++|
T Consensus       309 GTp~YmAPEvl~~~~y~~~~D  329 (423)
T 4fie_A          309 GTPYWMAPELISRLPYGPEVD  329 (423)
T ss_dssp             ECTTTCCHHHHTTCCBCTHHH
T ss_pred             cCcCcCCHHHHCCCCCCcHHH
Confidence            99999    666777888876

>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*

Probab=99.97  E-value=1.3e-32  Score=234.32  Aligned_cols=152  Identities=22%  Similarity=0.313  Sum_probs=120.7

Q ss_pred             CCCcccceeeeeCceEEEEEEEC-CCcEEEEEEeccc--ChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEe
Q 047066          104 NNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIV--YQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNE  180 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e  180 (256)
                      ++|++.+.||+|+||+||+|..+ +++.||||.+...  .....+.+.+|+.+|++++|||||++++++.+.+.+|+|||
T Consensus        24 e~Y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~yiVmE  103 (350)
T 4b9d_A           24 EKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMKHPNIVQYRESFEENGSLYIVMD  103 (350)
T ss_dssp             CCEEEEEEC------CEEEEEETTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             cceEEeEEEecCCCeEEEEEEECCCCCEEEEEEEehHHCCHHHHHHHHHHHHHHHHCCCCCCCcEEEEEEECCEEEEEEe
Confidence            68999999999999999999975 6899999998643  34556789999999999999999999999999999999999


Q ss_pred             cCCCCCC------------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceee
Q 047066          181 FVKLPTI------------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLS  235 (256)
Q Consensus       181 ~~~~~~l------------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~  235 (256)
                      ||++|+|            ++.....++.|++             |||||+|||+++++.+||+|||+|+.+.... ...
T Consensus       104 y~~gg~L~~~i~~~~~~~~~e~~~~~~~~qi~~aL~ylH~~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~-~~~  182 (350)
T 4b9d_A          104 YCEGGDLFKRINAQKGVLFQEDQILDWFVQICLALKHVHDRKILHRDIKSQNIFLTKDGTVQLGDFGIARVLNSTV-ELA  182 (350)
T ss_dssp             CCTTCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHTTCEETTCCGGGEEECTTCCEEECSTTEESCCCHHH-HHH
T ss_pred             CCCCCcHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHCCeeeccCCHHHEEECCCCCEEEcccccceeecCCc-ccc
Confidence            9999775            3444555666655             7999999999999999999999999764321 123


Q ss_pred             eeeeecccc----cccccCCCCCCC
Q 047066          236 TMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       236 ~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      +..+||+.|    .+.+..|+.++|
T Consensus       183 ~~~~GT~~YmAPE~l~~~~y~~~~D  207 (350)
T 4b9d_A          183 RACIGTPYYLSPEICENKPYNNKSD  207 (350)
T ss_dssp             HHHHSCCTTCCHHHHTTCCCCHHHH
T ss_pred             cccCCCccccCHHHHCCCCCCcHHH
Confidence            446799999    566667887776

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A*

Probab=99.97  E-value=2.2e-31  Score=223.41  Aligned_cols=153  Identities=25%  Similarity=0.360  Sum_probs=113.8

Q ss_pred             CCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC-hhHHHHHHHHHHHHHhCCCCcccceeeEEEECC--------
Q 047066          104 NNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY-QSQIEQCINKVVVLSQINHRNVVGLLGCCLETE--------  173 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~--------  173 (256)
                      ++|++.+.||+|+||+||+|+.+ +++.||+|+++... ....+.+.+|+.+|++++|||||++++++.+.+        
T Consensus         5 ~dy~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~~   84 (299)
T 4g31_A            5 TDFEPIQCLGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFNAWLEKNTTEKLQPS   84 (299)
T ss_dssp             HHEEEEEEEEECC--EEEEEEETTTCCEEEEEEEEECSSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEEC--------
T ss_pred             hhCEEeeEEecCCCeEEEEEEECCCCCEEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEecCcccccccc
Confidence            35889999999999999999975 68999999986544 445578999999999999999999999997644        


Q ss_pred             ----EEEEEEecCCCCCCCH-------------HHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCC
Q 047066          174 ----VPLLVNEFVKLPTISW-------------EVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGA  223 (256)
Q Consensus       174 ----~~~lv~e~~~~~~l~~-------------~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGl  223 (256)
                          .++++||||++|+|..             ...+.++.|++             |||||+|||++.++.+||+|||+
T Consensus        85 ~~~~~l~ivmE~~~gg~L~~~l~~~~~~~~~~~~~~~~i~~qi~~al~ylH~~~IiHRDlKp~NILl~~~~~vKl~DFGl  164 (299)
T 4g31_A           85 SPKVYLYIQMQLCRKENLKDWMNGRCTIEERERSVCLHIFLQIAEAVEFLHSKGLMHRDLKPSNIFFTMDDVVKVGDFGL  164 (299)
T ss_dssp             --CEEEEEEEECCCSCCHHHHHHTCCSGGGSCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTCCEEECCCCC
T ss_pred             CCCcEEEEEEecCCCCcHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHCcCccccCcHHHeEECCCCcEEEccCcc
Confidence                3799999999988632             22345555544             79999999999999999999999


Q ss_pred             ceecCCCCce-----------eeeeeeecccc----cccccCCCCCCC
Q 047066          224 SKLVPIDETQ-----------LSTMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       224 a~~~~~~~~~-----------~~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      |+.+..+...           ..+..+||+.|    .+.+..|+.++|
T Consensus       165 a~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~D  212 (299)
T 4g31_A          165 VTAMDQDEEEQTVLTPMPAYARHTGQVGTKLYMSPEQIHGNSYSHKVD  212 (299)
T ss_dssp             C--------------------------CCCTTSCHHHHTTCCCCTHHH
T ss_pred             ceecCCCccccccccccccccccCCcccCccccCHHHHcCCCCCCHHH
Confidence            9987543221           12345799999    666778888877

>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*

Probab=99.97  E-value=1.8e-31  Score=228.44  Aligned_cols=164  Identities=23%  Similarity=0.386  Sum_probs=135.1

Q ss_pred             ccChHHHHhhcCCCcccceeeeeCceEEEEEEECC------CcEEEEEEecccC-hhHHHHHHHHHHHHHhCC-CCcccc
Q 047066           93 IFTAGELKIATNNYAYDRMIGRGGYGTVFLGSLSD------NKAIAIKKSRIVY-QSQIEQCINKVVVLSQIN-HRNVVG  164 (256)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~------~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~-h~niv~  164 (256)
                      .+..++|++++++|++.+.||+|+||+||+|.+..      ++.||||.+.... ....+.+.+|+.+|.+++ |||||+
T Consensus        53 p~~~~~wEi~~~~~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~~~~~~~~~~~E~~il~~l~hhpnIV~  132 (353)
T 4ase_A           53 PYDASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVN  132 (353)
T ss_dssp             CCCHHHHBCCGGGEEEEEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCC
T ss_pred             CCCCcccEecHHHeEEeeEEecCCCeEEEEEEEcCCCcccCCeEEEEEEEccccChHHHHHHHHHHHHHHHcCCCCcEEE
Confidence            35567899999999999999999999999998642      3579999987544 455678999999999995 599999


Q ss_pred             eeeEEEEC-CEEEEEEecCCCCCC--------------------------CHHHHHHHHHHHH-------------hccC
Q 047066          165 LLGCCLET-EVPLLVNEFVKLPTI--------------------------SWEVRIRIAAETA-------------EDIK  204 (256)
Q Consensus       165 l~~~~~~~-~~~~lv~e~~~~~~l--------------------------~~~~~~~~~~~i~-------------rdlk  204 (256)
                      ++|+|... +.+++|||||++|+|                          ++...+.++.|+|             ||||
T Consensus       133 l~g~~~~~~~~~~iV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~yLH~~~iiHRDLK  212 (353)
T 4ase_A          133 LLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRKCIHRDLA  212 (353)
T ss_dssp             EEEEECCTTSCCEEEEECCTTEEHHHHHHHTGGGBCCC-------CTTCBCHHHHHHHHHHHHHHHHHHHHTTCCCSCCS
T ss_pred             EEEEEEecCCEEEEEEEcCCCCCHHHHHHhcccccccccccchhhccccCCHHHHHHHHHHHHHHHHhHhhCCeecCccC
Confidence            99999764 568999999998665                          4555667777766             7999


Q ss_pred             CCcEEEcCCCcEEEEecCCceecCCCCce-eeeeeeecccc----cccccCCCCCCC
Q 047066          205 SINILLDDNYTTKVCDFGASKLVPIDETQ-LSTMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       205 ~~NiLi~~~~~~ki~DFGla~~~~~~~~~-~~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      |+|||+++++.+||+|||+|+.+..+... ..+..+||+.|    .+.++.||.|||
T Consensus       213 ~~NILl~~~~~vKi~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~y~~ksD  269 (353)
T 4ase_A          213 ARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSD  269 (353)
T ss_dssp             GGGEEECGGGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHHHCCCCHHHH
T ss_pred             ccceeeCCCCCEEECcchhhhhcccCCCceeeccccccccccCHHHHhcCCCCCccc
Confidence            99999999999999999999987654433 33456799999    677888898887

>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}

Probab=99.97  E-value=1.1e-30  Score=217.78  Aligned_cols=148  Identities=20%  Similarity=0.269  Sum_probs=118.5

Q ss_pred             CcccceeeeeCceEEEEEEEC-CCcEEEEEEeccc--ChhHHHHHHHHHHHHHhCCCCcccceeeEEEE----CCEEEEE
Q 047066          106 YAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIV--YQSQIEQCINKVVVLSQINHRNVVGLLGCCLE----TEVPLLV  178 (256)
Q Consensus       106 ~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~----~~~~~lv  178 (256)
                      |++.+.||+|+||.||+|.++ ++..||+|.+...  .....+.+.+|+.++++++|||||++++++.+    .+.+++|
T Consensus        28 ~~~~~~iG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~lv  107 (290)
T 3fpq_A           28 LKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVLV  107 (290)
T ss_dssp             EEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEEEETTEEEEEEE
T ss_pred             EEeeeEEecCcCcEEEEEEECCCCeEEEEEEEchhhCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEeeccCCCcEEEEE
Confidence            366778999999999999975 6889999988543  34556789999999999999999999999875    3458999


Q ss_pred             EecCCCCCC----------CHHHHHHHHHHHH---------------hccCCCcEEEc-CCCcEEEEecCCceecCCCCc
Q 047066          179 NEFVKLPTI----------SWEVRIRIAAETA---------------EDIKSINILLD-DNYTTKVCDFGASKLVPIDET  232 (256)
Q Consensus       179 ~e~~~~~~l----------~~~~~~~~~~~i~---------------rdlk~~NiLi~-~~~~~ki~DFGla~~~~~~~~  232 (256)
                      ||||++|+|          ++.....++.|++               |||||+|||++ +++.+||+|||+|+.....  
T Consensus       108 mEy~~gg~L~~~l~~~~~l~~~~~~~~~~qi~~aL~ylH~~~~~IiHRDlKp~NILl~~~~g~vKl~DFGla~~~~~~--  185 (290)
T 3fpq_A          108 TELMTSGTLKTYLKRFKVMKIKVLRSWCRQILKGLQFLHTRTPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKRAS--  185 (290)
T ss_dssp             EECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHTSSSCCCCCCCCGGGEEESSTTSCEEECCTTGGGGCCTT--
T ss_pred             EeCCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEecccChhheeEECCCCCEEEEeCcCCEeCCCC--
Confidence            999999876          4444445554444               79999999997 4789999999999864322  


Q ss_pred             eeeeeeeecccc---cccccCCCCCCC
Q 047066          233 QLSTMVQGTLGY---YLHTSQGTLNKE  256 (256)
Q Consensus       233 ~~~~~~~Gt~~y---~~~~~~~t~ksD  256 (256)
                       ..+..+|||.|   ++..+.|+.++|
T Consensus       186 -~~~~~~GTp~YmAPE~~~~~y~~~~D  211 (290)
T 3fpq_A          186 -FAKAVIGTPEFMAPEMYEEKYDESVD  211 (290)
T ss_dssp             -SBEESCSSCCCCCGGGGGTCCCTHHH
T ss_pred             -ccCCcccCccccCHHHcCCCCCcHHH
Confidence             23456799999   555677888877

>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A

Probab=99.97  E-value=2.4e-30  Score=214.03  Aligned_cols=151  Identities=19%  Similarity=0.298  Sum_probs=110.6

Q ss_pred             CCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC---hhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEE
Q 047066          104 NNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY---QSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVN  179 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~  179 (256)
                      ++|++.+.||+|+||+||+|..+ +++.||+|.++...   ....+.+.+|+.+++.++||||+++++++.+.+.+++||
T Consensus        13 g~Y~i~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~ivm   92 (275)
T 3hyh_A           13 GNYQIVKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIKLYDVIKSKDEIIMVI   92 (275)
T ss_dssp             -CCEEEEEEEC---CCEEEEECTTTCCEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             eCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEEeHHHcCCHHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEEEE
Confidence            57999999999999999999965 68999999886432   333467899999999999999999999999999999999


Q ss_pred             ecCCC---------CCCCHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceeeee
Q 047066          180 EFVKL---------PTISWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTM  237 (256)
Q Consensus       180 e~~~~---------~~l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~~  237 (256)
                      ||+++         +.+++.....++.|++             |||||+|||+++++.+||+|||+|+......  ..+.
T Consensus        93 Ey~~g~L~~~l~~~~~l~e~~~~~~~~qi~~al~ylH~~~IiHRDiKP~NILl~~~~~vkl~DFGla~~~~~~~--~~~~  170 (275)
T 3hyh_A           93 EYAGNELFDYIVQRDKMSEQEARRFFQQIISAVEYCHRHKIVHRDLKPENLLLDEHLNVKIADFGLSNIMTDGN--FLKT  170 (275)
T ss_dssp             ECCCEEHHHHHHHSCSCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCTTTEEECTTCCEEECCSSCC-------------
T ss_pred             eCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCcccccCChHHeEECCCCCEEEeecCCCeecCCCC--ccCC
Confidence            99954         4567777777777766             7999999999999999999999998765332  2345


Q ss_pred             eeecccc----cccccCC-CCCCC
Q 047066          238 VQGTLGY----YLHTSQG-TLNKE  256 (256)
Q Consensus       238 ~~Gt~~y----~~~~~~~-t~ksD  256 (256)
                      .+||+.|    .+.+..+ +.++|
T Consensus       171 ~~GT~~Y~APE~~~~~~y~~~~~D  194 (275)
T 3hyh_A          171 SCGSPNYAAPEVISGKLYAGPEVD  194 (275)
T ss_dssp             ----CTTSCHHHHSSSSCCCTHHH
T ss_pred             eeECcccCChhhhcCCCCCCChhh
Confidence            6799999    4444444 45665

>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*

Probab=99.97  E-value=2.4e-31  Score=222.91  Aligned_cols=152  Identities=24%  Similarity=0.278  Sum_probs=116.8

Q ss_pred             CCCcccceeeeeCceEEEEEEEC----CCcEEEEEEecccC--hhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEE
Q 047066          104 NNYAYDRMIGRGGYGTVFLGSLS----DNKAIAIKKSRIVY--QSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLL  177 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~V~~~~~~----~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~l  177 (256)
                      ++|++.+.||+|+||+||+|+..    +++.||+|.++...  ......+.+|+.+|++++|||||++++++.+.+.+++
T Consensus        24 ~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~i  103 (304)
T 3ubd_A           24 SQFELLKVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLKVRDRVRTKMERDILVEVNHPFIVKLHYAFQTEGKLYL  103 (304)
T ss_dssp             GGEEEEEEEECGGGCEEEEEEECSSTTTTCEEEEEEEESEEEEEEECC------CCCCCCCCTTEECEEEEEEETTEEEE
T ss_pred             cccEEEEEEecCCCeEEEEEEEccCCCCCEEEEEEEEehHHcChHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEE
Confidence            57999999999999999999852    46789999886432  2233468889999999999999999999999999999


Q ss_pred             EEecCCCCCC----------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCcee
Q 047066          178 VNEFVKLPTI----------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQL  234 (256)
Q Consensus       178 v~e~~~~~~l----------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~  234 (256)
                      |||||++|+|          ++.....++.|++             |||||+|||+++++.+||+|||+|+........ 
T Consensus       104 vmEy~~gg~L~~~l~~~~~l~e~~~~~~~~qi~~aL~ylH~~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~~~-  182 (304)
T 3ubd_A          104 ILDFLRGGDLFTRLSKEVMFTEEDVKFYLAELALALDHLHSLGIIYRDLKPENILLDEEGHIKLTDFGLSKESIDHEKK-  182 (304)
T ss_dssp             EECCCTTCEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSSCCGGGEEECTTSCEEEESSEEEEC-----CC-
T ss_pred             EEEcCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCCcCCCCCHHHeEEcCCCCEEecccccceeccCCCcc-
Confidence            9999999775          4555556666655             799999999999999999999999976443322 


Q ss_pred             eeeeeecccc----cccccCCCCCCC
Q 047066          235 STMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       235 ~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      ....+||+.|    .+.+..++.++|
T Consensus       183 ~~~~~GT~~YmAPE~~~~~~y~~~~D  208 (304)
T 3ubd_A          183 AYSFCGTVEYMAPEVVNRRGHTQSAD  208 (304)
T ss_dssp             CCSCCCCGGGCCHHHHHTSCCCTHHH
T ss_pred             ccccccCcccCCHHHhccCCCCCCCc
Confidence            3446799999    566777888776

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*

Probab=99.96  E-value=4.2e-30  Score=217.95  Aligned_cols=149  Identities=18%  Similarity=0.235  Sum_probs=119.8

Q ss_pred             cCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEec
Q 047066          103 TNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEF  181 (256)
Q Consensus       103 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~  181 (256)
                      .+.|++.+.||+|+||+||+|+++ +|+.||||+++....     ..+|+.+++.++|||||++++++.+.+.+++||||
T Consensus        57 ~~~~~~~~~lG~G~fG~Vy~a~~~~~g~~vAiK~i~~~~~-----~~~E~~il~~l~HpnIV~l~~~~~~~~~~~ivmEy  131 (336)
T 4g3f_A           57 VHWMTHQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEVF-----RVEELVACAGLSSPRIVPLYGAVREGPWVNIFMEL  131 (336)
T ss_dssp             TTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTC-----CTHHHHTTTTCCCTTBCCEEEEEEETTEEEEEECC
T ss_pred             hhheEeCcEeccCCCeEEEEEEECCCCCEEEEEEECHHHh-----HHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEec
Confidence            356788889999999999999975 689999999865322     24699999999999999999999999999999999


Q ss_pred             CCCCCC----------CHHHHHHHHHHHH-------------hccCCCcEEEcCCC-cEEEEecCCceecCCCCce----
Q 047066          182 VKLPTI----------SWEVRIRIAAETA-------------EDIKSINILLDDNY-TTKVCDFGASKLVPIDETQ----  233 (256)
Q Consensus       182 ~~~~~l----------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~-~~ki~DFGla~~~~~~~~~----  233 (256)
                      |++|+|          ++.....++.|++             |||||+|||++.++ .+||+|||+|+.+..+...    
T Consensus       132 ~~gg~L~~~l~~~~~l~e~~~~~~~~qi~~aL~ylH~~~IiHRDlKp~NILl~~~g~~vKl~DFGla~~~~~~~~~~~~~  211 (336)
T 4g3f_A          132 LEGGSLGQLIKQMGCLPEDRALYYLGQALEGLEYLHTRRILHGDVKADNVLLSSDGSRAALCDFGHALCLQPDGLGKSLL  211 (336)
T ss_dssp             CTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHTTTEECSCCCGGGEEECTTSCCEEECCCTTCEEC----------
T ss_pred             cCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCceecccCHHHEEEeCCCCEEEEeeCCCCeEccCCCccccee
Confidence            999664          5666667777765             79999999999987 6999999999987543322    


Q ss_pred             eeeeeeecccc----cccccCCCCCCC
Q 047066          234 LSTMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       234 ~~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      .....+||+.|    .+.+..++.++|
T Consensus       212 ~~~~~~GT~~YmAPE~~~~~~y~~~~D  238 (336)
T 4g3f_A          212 TGDYIPGTETHMAPEVVMGKPCDAKVD  238 (336)
T ss_dssp             --CCCCCCGGGCCHHHHTTCCCCTHHH
T ss_pred             cCCccccCccccCHHHHCCCCCCcHHH
Confidence            12335799999    666777888876

>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*

Probab=99.96  E-value=3.3e-30  Score=216.79  Aligned_cols=139  Identities=22%  Similarity=0.300  Sum_probs=106.4

Q ss_pred             CCCcccceeeeeCceEEEEEEECCCcEEEEEEecccChhHHHHHHHHHHHHHhCCCCcccceeeEEEECC----EEEEEE
Q 047066          104 NNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLETE----VPLLVN  179 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~----~~~lv~  179 (256)
                      ++|.+.+.||+|+||+||+|.+ +|+.||||++....... ..+..|+..+.+++|||||+++++|...+    .+++||
T Consensus         3 r~i~L~~~iG~G~fG~Vy~~~~-~g~~VAvK~l~~~~~~~-~~~e~Ei~~~~~l~HpNIv~l~g~~~~~~~~~~~~~lV~   80 (303)
T 3hmm_A            3 RTIVLQESIGKGRFGEVWRGKW-RGEEVAVKIFSSREERS-WFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVS   80 (303)
T ss_dssp             GGEEEEEEEEECSSSEEEEEEE-TTEEEEEEEECGGGHHH-HHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEEE
T ss_pred             cEEEEEEEEeeCCCeEEEEEEE-CCEEEEEEEECccchhh-HHHHHHHHHHhcCCCCCCCcEEEEEEecCCCceEEEEEe
Confidence            4688889999999999999998 68999999986543211 22234555567889999999999998754    589999


Q ss_pred             ecCCCCCC---------CHHHHHHHHHHH---------------------HhccCCCcEEEcCCCcEEEEecCCceecCC
Q 047066          180 EFVKLPTI---------SWEVRIRIAAET---------------------AEDIKSINILLDDNYTTKVCDFGASKLVPI  229 (256)
Q Consensus       180 e~~~~~~l---------~~~~~~~~~~~i---------------------~rdlk~~NiLi~~~~~~ki~DFGla~~~~~  229 (256)
                      |||++|+|         ++...++++.|+                     ||||||+|||++.++.+||+|||+|+....
T Consensus        81 Ey~~~gsL~~~l~~~~l~~~~~~~i~~~ia~gl~ylH~~~~~~~~~~~IiHRDlKp~NILl~~~~~~Ki~DFGla~~~~~  160 (303)
T 3hmm_A           81 DYHEHGSLFDYLNRYTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDS  160 (303)
T ss_dssp             ECCTTCBHHHHHHHCCBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCCEECSCCCGGGEEECTTSCEEECCCTTCEEEET
T ss_pred             cCCCCCcHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhhhccCCCCEeeccCCcccEEECCCCCEEEEeCCCCccccC
Confidence            99999876         455555665554                     479999999999999999999999998765


Q ss_pred             CCcee---eeeeeecccc
Q 047066          230 DETQL---STMVQGTLGY  244 (256)
Q Consensus       230 ~~~~~---~~~~~Gt~~y  244 (256)
                      .....   ....+||+.|
T Consensus       161 ~~~~~~~~~~~~~GT~~y  178 (303)
T 3hmm_A          161 ATDTIDIAPNHRVGTKRY  178 (303)
T ss_dssp             TTTEESCC-----CCGGG
T ss_pred             CCCceeeecccccccccc
Confidence            44332   2345799999

>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}

Probab=99.95  E-value=3.1e-28  Score=211.63  Aligned_cols=153  Identities=20%  Similarity=0.297  Sum_probs=121.4

Q ss_pred             CCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC--hhHHHHHHHHHHHHHhCCCCcccceeeEEEEC------CE
Q 047066          104 NNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY--QSQIEQCINKVVVLSQINHRNVVGLLGCCLET------EV  174 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~------~~  174 (256)
                      ++|++.+.||+|+||+||+|..+ +|+.||||+++...  ....+.+.+|+.+|+.++|||||++++++...      +.
T Consensus        54 ~~Y~~~~~lG~G~fG~V~~a~~~~t~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~~~~~  133 (398)
T 4b99_A           54 DEYEIIETIGNGAYGVVSSARRRLTGQQVAIKKIPNAFDVVTNAKRTLRELKILKHFKHDNIIAIKDILRPTVPYGEFKS  133 (398)
T ss_dssp             SSEEEEEEEEECSSCEEEEEEETTTCCEEEEEEETTTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSSCTTTCCC
T ss_pred             CCeEEEEEEecccCeEEEEEEECCCCCEEEEEEECccccchHHHHHHHHHHHHHHhcCCCCcceEeeeeecccccccCCE
Confidence            57999999999999999999975 69999999986533  34557789999999999999999999988643      57


Q ss_pred             EEEEEecCCC---------CCCCHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCC-
Q 047066          175 PLLVNEFVKL---------PTISWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDE-  231 (256)
Q Consensus       175 ~~lv~e~~~~---------~~l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~-  231 (256)
                      +|+|||||++         +.+++.....++.|++             |||||+|||++.++.+||+|||+|+.+.... 
T Consensus       134 ~~ivmE~~~g~L~~~i~~~~~l~~~~~~~~~~qil~al~ylH~~~iiHRDlKP~NIl~~~~~~~Ki~DFGla~~~~~~~~  213 (398)
T 4b99_A          134 VYVVLDLMESDLHQIIHSSQPLTLEHVRYFLYQLLRGLKYMHSAQVIHRDLKPSNLLVNENCELKIGDFGMARGLCTSPA  213 (398)
T ss_dssp             EEEEEECCSEEHHHHHTSSSCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTCCEEECCCTTCBCC-----
T ss_pred             EEEEEeCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCcCcCCCcCccccccCCCCCEEEeecceeeecccCcc
Confidence            8999999965         4567777777777665             7999999999999999999999999764322 


Q ss_pred             --ceeeeeeeecccc----cccc-cCCCCCCC
Q 047066          232 --TQLSTMVQGTLGY----YLHT-SQGTLNKE  256 (256)
Q Consensus       232 --~~~~~~~~Gt~~y----~~~~-~~~t~ksD  256 (256)
                        ....+..+||+.|    .+.+ ..++.++|
T Consensus       214 ~~~~~~~~~~GT~~Y~APEv~~~~~~~~~~~D  245 (398)
T 4b99_A          214 EHQYFMTEYVATRWYRAPELMLSLHEYTQAID  245 (398)
T ss_dssp             --CCCCCSSCCCCTTCCHHHHTTCSCCCTHHH
T ss_pred             ccccccccceeChHhcCHHHhcCCCCCCChhh
Confidence              1223456899999    3333 34577665

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A

Probab=99.95  E-value=3.4e-27  Score=214.19  Aligned_cols=151  Identities=17%  Similarity=0.257  Sum_probs=125.9

Q ss_pred             CCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEecC
Q 047066          104 NNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEFV  182 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~  182 (256)
                      ++|++.+.||+|+||.||+|..+ +|+.||+|.+........+.+.+|+.+|+.++||||+++++++.+.+.++++||||
T Consensus       157 ~~Y~i~~~lG~G~fg~V~~~~~~~tg~~~AiK~i~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~~~iv~E~~  236 (573)
T 3uto_A          157 DHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPTLVNLHDAFEDDNEMVMIYEFM  236 (573)
T ss_dssp             GTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHHHTCCTTBCCEEEEEECSSEEEEEEECC
T ss_pred             cccEEEEEEeeccCeEEEEEEECCCCCEEEEEEEeccchhhHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEeec
Confidence            57999999999999999999975 68999999987766666678999999999999999999999999999999999999


Q ss_pred             CCCCC-----------CHHHHHHHHHHHH-------------hccCCCcEEEcCC--CcEEEEecCCceecCCCCceeee
Q 047066          183 KLPTI-----------SWEVRIRIAAETA-------------EDIKSINILLDDN--YTTKVCDFGASKLVPIDETQLST  236 (256)
Q Consensus       183 ~~~~l-----------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~--~~~ki~DFGla~~~~~~~~~~~~  236 (256)
                      ++|+|           ++.....++.|++             |||||+|||++.+  +.+||+|||+|+.+.....  ..
T Consensus       237 ~gg~L~~~i~~~~~~l~e~~~~~~~~qi~~al~ylH~~~iiHRDlKp~Nill~~~~~~~vKl~DFG~a~~~~~~~~--~~  314 (573)
T 3uto_A          237 SGGELFEKVADEHNKMSEDEAVEYMRQVCKGLCHMHENNYVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDPKQS--VK  314 (573)
T ss_dssp             CCCBHHHHHTCTTSCEEHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESSSSCCCEEECCCSSCEECCTTSE--EE
T ss_pred             CCCcHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHCCeeeccCChhhccccCCCCCCEEEeeccceeEccCCCc--ee
Confidence            98765           3444555555554             7999999999854  8999999999998765432  34


Q ss_pred             eeeecccc----cccccCCCCCCC
Q 047066          237 MVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       237 ~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      ..+||+.|    .+.+..|+.++|
T Consensus       315 ~~~GT~~y~APEv~~~~~y~~~~D  338 (573)
T 3uto_A          315 VTTGTAEFAAPEVAEGKPVGYYTD  338 (573)
T ss_dssp             EECSSGGGCCHHHHTTCCBCHHHH
T ss_pred             eeEECccccCHHHhCCCCCCcHHH
Confidence            56799999    555666776655

>4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A*

Probab=99.94  E-value=7.1e-27  Score=200.87  Aligned_cols=126  Identities=17%  Similarity=0.281  Sum_probs=105.5

Q ss_pred             hcCCCcccceeeeeCceEEEEEEEC----CCcEEEEEEecccChhHHHHHHHHHHHHHhC-CCCcccceeeEEEECCEEE
Q 047066          102 ATNNYAYDRMIGRGGYGTVFLGSLS----DNKAIAIKKSRIVYQSQIEQCINKVVVLSQI-NHRNVVGLLGCCLETEVPL  176 (256)
Q Consensus       102 ~~~~~~~~~~lg~G~~g~V~~~~~~----~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~  176 (256)
                      ..+.|++.+.||+|+||+||+|..+    +++.||+|.+....  ...++.+|+++|+.+ +||||+++++++.+.+..+
T Consensus        19 l~~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~--~~~~~~~E~~~l~~~~~h~nIv~l~~~~~~~~~~~   96 (361)
T 4f9c_A           19 LSNVFKIEDKIGEGTFSSVYLATAQLQVGPEEKIALKHLIPTS--HPIRIAAELQCLTVAGGQDNVMGVKYCFRKNDHVV   96 (361)
T ss_dssp             GGGTCEEEEEEEECSSEEEEEEEEEBTTSCEEEEEEEEECTTS--CHHHHHHHHHHHHHTCSBTTBCCCSEEEEETTEEE
T ss_pred             ccCcEEEEEEEecccCcEEEEEEEcccCCCCCEEEEEEEcccc--CHHHHHHHHHHHHHhcCCCCCceEEEEEEECCEEE
Confidence            3468999999999999999999853    46789999886543  235678999999998 7999999999999999999


Q ss_pred             EEEecCCCCCC-------CHHHHHHHHHHHH-------------hccCCCcEEEcCC-CcEEEEecCCceecCC
Q 047066          177 LVNEFVKLPTI-------SWEVRIRIAAETA-------------EDIKSINILLDDN-YTTKVCDFGASKLVPI  229 (256)
Q Consensus       177 lv~e~~~~~~l-------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~-~~~ki~DFGla~~~~~  229 (256)
                      +||||+++++|       ++.....++.|++             |||||+|||++.+ +.+||+|||+|+....
T Consensus        97 lvmE~~~g~~L~~~~~~l~~~~~~~~~~qll~al~ylH~~gIiHRDiKPeNiLl~~~~~~~kl~DFGla~~~~~  170 (361)
T 4f9c_A           97 IAMPYLEHESFLDILNSLSFQEVREYMLNLFKALKRIHQFGIVHRDVKPSNFLYNRRLKKYALVDFGLAQGTHD  170 (361)
T ss_dssp             EEEECCCCCCHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEETTTTEEEECCCTTCEECTT
T ss_pred             EEEeCCCcccHHHHHcCCCHHHHHHHHHHHHHHHHHHHHCCeEeCcCCHHHeEEeCCCCeEEECcCCCCcccCC
Confidence            99999998764       5556666666654             7999999999876 7999999999987643

>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A

Probab=99.94  E-value=4.6e-27  Score=214.00  Aligned_cols=151  Identities=22%  Similarity=0.260  Sum_probs=118.7

Q ss_pred             cCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC---hhHHHHHHH---HHHHHHhCCCCcccceeeEEEECCEE
Q 047066          103 TNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY---QSQIEQCIN---KVVVLSQINHRNVVGLLGCCLETEVP  175 (256)
Q Consensus       103 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~---E~~~l~~l~h~niv~l~~~~~~~~~~  175 (256)
                      .++|++.++||+|+||+||+|+.+ +|+.||+|.+....   ........+   ++.+++.++|||||++++++.+.+.+
T Consensus       188 lddf~i~k~LG~G~fG~V~la~~~~tg~~~AiK~i~K~~i~~~~~~~~~~~E~~~l~ll~~~~HP~IV~l~~~f~~~~~l  267 (689)
T 3v5w_A          188 MNDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKL  267 (689)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEECSSEE
T ss_pred             hHHeEEEEEEecccCeEEEEEEECCCCCEEEEEEEeHHHcchhhhHHHHHHHHHHHHHHhhCCCCCEeEEEEEEEECCEE
Confidence            467999999999999999999976 68999999885321   112233334   45667788999999999999999999


Q ss_pred             EEEEecCCCCCC----------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCc
Q 047066          176 LLVNEFVKLPTI----------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDET  232 (256)
Q Consensus       176 ~lv~e~~~~~~l----------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~  232 (256)
                      ++|||||++|+|          ++.....++.||+             |||||+|||++.+|.+||+|||+|+.+.... 
T Consensus       268 ylVmEy~~GGdL~~~l~~~~~l~E~~a~~y~~qIl~aL~yLH~~gIiHRDLKPeNILld~~G~vKL~DFGlA~~~~~~~-  346 (689)
T 3v5w_A          268 SFILDLMNGGDLHYHLSQHGVFSEADMRFYAAEIILGLEHMHNRFVVYRDLKPANILLDEHGHVRISDLGLACDFSKKK-  346 (689)
T ss_dssp             EEEECCCCSCBHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHTTTEECCCCSGGGEEECTTSCEEECCCTTCEECSSCC-
T ss_pred             EEEEecCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCchHHeEEeCCCCEEecccceeeecCCCC-
Confidence            999999999775          5555556666654             7999999999999999999999999875433 


Q ss_pred             eeeeeeeecccc----cccc-cCCCCCCC
Q 047066          233 QLSTMVQGTLGY----YLHT-SQGTLNKE  256 (256)
Q Consensus       233 ~~~~~~~Gt~~y----~~~~-~~~t~ksD  256 (256)
                        ..+.+|||.|    .+.. ..|+.++|
T Consensus       347 --~~t~~GTp~YmAPEvl~~~~~y~~~vD  373 (689)
T 3v5w_A          347 --PHASVGTHGYMAPEVLQKGVAYDSSAD  373 (689)
T ss_dssp             --CCSCCSCGGGCCHHHHSTTCCCCTHHH
T ss_pred             --CCCccCCcCccCHHHHhCCCCCCcHHH
Confidence              2346799999    3433 45777766

>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*

Probab=99.93  E-value=7.2e-26  Score=199.31  Aligned_cols=161  Identities=22%  Similarity=0.253  Sum_probs=128.7

Q ss_pred             hHHHHhhcCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC---hhHHHHHHHHHHHHHhCCCCcccceeeEEEE
Q 047066           96 AGELKIATNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY---QSQIEQCINKVVVLSQINHRNVVGLLGCCLE  171 (256)
Q Consensus        96 ~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~  171 (256)
                      ..++....++|++.++||+|+||+||+|..+ +++.||+|.+....   ......+.+|..++..++||||+++++++.+
T Consensus        66 ~~~~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~~~  145 (437)
T 4aw2_A           66 VKQMRLHREDFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNGDSKWITTLHYAFQD  145 (437)
T ss_dssp             HHHHSCCGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTTTCCHHHHHHHHHHSCTTTBCCEEEEEEC
T ss_pred             hhcccCChhheEEEEEEEeCCCEEEEEEEEcCCCcEEEEEEEEHHHhhhHHHHHHHHHHHHHHHhCCCCCEEEEEEEEee
Confidence            3455667789999999999999999999986 57899999886422   1222348899999999999999999999999


Q ss_pred             CCEEEEEEecCCCCCC-----------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceec
Q 047066          172 TEVPLLVNEFVKLPTI-----------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLV  227 (256)
Q Consensus       172 ~~~~~lv~e~~~~~~l-----------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~  227 (256)
                      .+..++||||+++|+|           ++.....++.+++             |||||+|||++.++.+||+|||+|+..
T Consensus       146 ~~~~~lV~Ey~~gg~L~~~l~~~~~~l~e~~~~~~~~qi~~aL~~LH~~giiHrDLKp~NILl~~~g~vkL~DFGla~~~  225 (437)
T 4aw2_A          146 DNNLYLVMDYYVGGDLLTLLSKFEDRLPEEMARFYLAEMVIAIDSVHQLHYVHRDIKPDNILMDMNGHIRLADFGSCLKL  225 (437)
T ss_dssp             SSEEEEEECCCTTCBHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEEC
T ss_pred             CCEEEEEEecCCCCcHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHhCCeEecccCHHHeeEcCCCCEEEcchhhhhhc
Confidence            9999999999987654           5555555555554             799999999999999999999999887


Q ss_pred             CCCCceeeeeeeecccc----ccc-----ccCCCCCCC
Q 047066          228 PIDETQLSTMVQGTLGY----YLH-----TSQGTLNKE  256 (256)
Q Consensus       228 ~~~~~~~~~~~~Gt~~y----~~~-----~~~~t~ksD  256 (256)
                      ..+........+||+.|    .+.     .+.++.++|
T Consensus       226 ~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~~D  263 (437)
T 4aw2_A          226 MEDGTVQSSVAVGTPDYISPEILQAMEGGKGRYGPECD  263 (437)
T ss_dssp             CTTSCEECCSCCSCGGGCCHHHHHHHHTSCCEECTHHH
T ss_pred             ccCCCcccccccCCcCeeChHHHhhcccCCCCCCCcCe
Confidence            66555545556799999    332     456777765

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*

Probab=99.93  E-value=4.5e-25  Score=184.89  Aligned_cols=153  Identities=23%  Similarity=0.310  Sum_probs=126.3

Q ss_pred             cCCCcccceeeeeCceEEEEEEE-CCCcEEEEEEecccChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEec
Q 047066          103 TNNYAYDRMIGRGGYGTVFLGSL-SDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEF  181 (256)
Q Consensus       103 ~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~  181 (256)
                      .++|++.+.||+|+||.||+|.. .+++.||+|.+........+.+.+|+.+++.++||||+++++++...+..++||||
T Consensus        19 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~   98 (297)
T 3fxz_A           19 KKKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEY   98 (297)
T ss_dssp             GGTBCCCEEEEEETTEEEEEEEBTTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred             hhceeeeeeeccCCCeEEEEEEECCCCcEEEEEEeecccccHHHHHHHHHHHHhcCCCCCCCeEeEEEEECCEEEEEEEC
Confidence            46899999999999999999996 47899999998765545557789999999999999999999999999999999999


Q ss_pred             CCCCCC---------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceeeeeee
Q 047066          182 VKLPTI---------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQ  239 (256)
Q Consensus       182 ~~~~~l---------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~~~~  239 (256)
                      +++++|         +......++.+++             +||||+|||++.++.+||+|||+++........ .....
T Consensus        99 ~~~~~L~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~-~~~~~  177 (297)
T 3fxz_A           99 LAGGSLTDVVTETCMDEGQIAAVCRECLQALEFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSK-RSTMV  177 (297)
T ss_dssp             CTTCBHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTCCEEECCCTTCEECCSTTCC-BCCCC
T ss_pred             CCCCCHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHhCCceeCCCCHHHEEECCCCCEEEeeCCCceecCCcccc-cCCcc
Confidence            999775         4444555666554             699999999999999999999999887654332 33456


Q ss_pred             ecccc----cccccCCCCCCC
Q 047066          240 GTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       240 Gt~~y----~~~~~~~t~ksD  256 (256)
                      ||+.|    .+.+..++.++|
T Consensus       178 gt~~y~aPE~~~~~~~~~~~D  198 (297)
T 3fxz_A          178 GTPYWMAPEVVTRKAYGPKVD  198 (297)
T ss_dssp             SCGGGCCHHHHHCSCBCTHHH
T ss_pred             CCcCccChhhhcCCCCCcHHH
Confidence            99999    555667777765

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens}

Probab=99.92  E-value=5.1e-25  Score=185.28  Aligned_cols=154  Identities=20%  Similarity=0.350  Sum_probs=126.4

Q ss_pred             cCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEec
Q 047066          103 TNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEF  181 (256)
Q Consensus       103 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~  181 (256)
                      .++|.+.+.||+|+||.||++... ++..+|+|.+........+.+.+|+.+++.++||||+++++++.+.+..++||||
T Consensus         9 ~~~~~~~~~lG~G~~g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~   88 (310)
T 3s95_A            9 PSDLIHGEVLGKGCFGQAIKVTHRETGEVMVMKELIRFDEETQRTFLKEVKVMRCLEHPNVLKFIGVLYKDKRLNFITEY   88 (310)
T ss_dssp             GGGEEEEEEEECCSSEEEEEEEETTTCCEEEEEEESCCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred             hhHeeccceecCCCCEEEEEEEECCCCcEEEEEEeccCCHHHHHHHHHHHHHHHhCCCcCcccEEEEEecCCeeEEEEEe
Confidence            467889999999999999999975 6889999998776777778899999999999999999999999999999999999


Q ss_pred             CCCCCC-----------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceee--
Q 047066          182 VKLPTI-----------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLS--  235 (256)
Q Consensus       182 ~~~~~l-----------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~--  235 (256)
                      +++++|           ++.....++.|++             +||||+|||++.++.+||+|||+++..........  
T Consensus        89 ~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~  168 (310)
T 3s95_A           89 IKGGTLRGIIKSMDSQYPWSQRVSFAKDIASGMAYLHSMNIIHRDLNSHNCLVRENKNVVVADFGLARLMVDEKTQPEGL  168 (310)
T ss_dssp             CTTCBHHHHHHHCCTTSCHHHHHHHHHHHHHHHHHHHHTTEECSCCSTTSEEECTTSCEEECCCTTCEECC---------
T ss_pred             cCCCcHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhCCccCCCCCcCeEEECCCCCEEEeecccceeccccccccccc
Confidence            988554           5666667777765             59999999999999999999999987654322211  


Q ss_pred             -----------eeeeecccc----cccccCCCCCCC
Q 047066          236 -----------TMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       236 -----------~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                                 ....||+.|    .+.+..++.++|
T Consensus       169 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~D  204 (310)
T 3s95_A          169 RSLKKPDRKKRYTVVGNPYWMAPEMINGRSYDEKVD  204 (310)
T ss_dssp             -----------CCCCSCGGGCCHHHHTTCCCCTHHH
T ss_pred             ccccccccccccccCCCcceeCHHHhcCCCCCcHHH
Confidence                       134699999    556677777766

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*

Probab=99.92  E-value=2.1e-25  Score=188.64  Aligned_cols=163  Identities=37%  Similarity=0.584  Sum_probs=133.3

Q ss_pred             cChHHHHhhcCCCcccceeeeeCceEEEEEEECCCcEEEEEEecccChhHHHHHHHHHHHHHhCCCCcccceeeEEEECC
Q 047066           94 FTAGELKIATNNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLETE  173 (256)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~  173 (256)
                      ++..++....++|++.+.||+|+||.||+|..++++.||+|..........+.+.+|+.+++.++||||+++++++...+
T Consensus        29 ~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~  108 (321)
T 2qkw_B           29 VPLVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPESSQGIEEFETEIETLSFCRHPHLVSLIGFCDERN  108 (321)
T ss_dssp             -CCSCCCCCCCCCSCCCCSCBCSSSEEEEEECTTCCEEEEEECCSCCSSHHHHHHHHHHGGGSCCCTTBCCEEEECCCTT
T ss_pred             ecHHHHHHHHhccCccceeecCCCeeEEEEEECCCCEEEEEEecccChHHHHHHHHHHHHHHhCCCCCEeeEEEEEcCCC
Confidence            44445556778999999999999999999998889999999887766666788999999999999999999999999999


Q ss_pred             EEEEEEecCCCCC--------------CCHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCcee
Q 047066          174 VPLLVNEFVKLPT--------------ISWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKL  226 (256)
Q Consensus       174 ~~~lv~e~~~~~~--------------l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~  226 (256)
                      ..+++|||+++++              +++.....++.+++             +||||+|||++.++.+||+|||+++.
T Consensus       109 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~  188 (321)
T 2qkw_B          109 EMILIYKYMENGNLKRHLYGSDLPTMSMSWEQRLEICIGAARGLHYLHTRAIIHRDVKSINILLDENFVPKITDFGISKK  188 (321)
T ss_dssp             CCEEEEECCTTCBTGGGSSSSCCCSCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCSTTEEECTTCCEEECCCTTCEE
T ss_pred             eEEEEEEcCCCCcHHHHHhccCCCccccCHHHHHHHHHHHHHHHHHhcCCCeecCCCCHHHEEECCCCCEEEeecccccc
Confidence            9999999998755              45666777777765             59999999999999999999999987


Q ss_pred             cCCCC-ceeeeeeeecccc----cccccCCCCCCC
Q 047066          227 VPIDE-TQLSTMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       227 ~~~~~-~~~~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      ..... ........||+.|    .+.++.++.++|
T Consensus       189 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~D  223 (321)
T 2qkw_B          189 GTELDQTHLSTVVKGTLGYIDPEYFIKGRLTEKSD  223 (321)
T ss_dssp             CSSSSCCCCBCCCEEETTTCCHHHHHHCBCCTHHH
T ss_pred             cccccccccccccCCCccccCHHHhcCCCCCcccc
Confidence            54322 2223345699999    455667777765

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*

Probab=99.92  E-value=1.3e-25  Score=190.15  Aligned_cols=168  Identities=35%  Similarity=0.609  Sum_probs=136.4

Q ss_pred             CCccccChHHHHhhcCCCcccceeeeeCceEEEEEEECCCcEEEEEEecccC-hhHHHHHHHHHHHHHhCCCCcccceee
Q 047066           89 DTAKIFTAGELKIATNNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVY-QSQIEQCINKVVVLSQINHRNVVGLLG  167 (256)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~  167 (256)
                      .....++..++....++|++.+.||+|+||.||+|..++++.||+|.+.... ......+.+|+.+++.++||||+++++
T Consensus        15 ~~~~~~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~   94 (326)
T 3uim_A           15 GQLKRFSLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRG   94 (326)
T ss_dssp             CCCEECCTHHHHTTTTSSCSTTEEECCSSSEEEEECCSSSCCEEEEECCC-----CCCHHHHHHHGGGTCCCTTBCCCCE
T ss_pred             CccceecHHHHHHHhhccccceeEecCCCcEEEEEEecCCCEEEEEEeccccCchHHHHHHHHHHHHHhccCCCccceEE
Confidence            4556788899999999999999999999999999998789999999886543 222236889999999999999999999


Q ss_pred             EEEECCEEEEEEecCCCCC--------------CCHHHHHHHHHHHH----------------hccCCCcEEEcCCCcEE
Q 047066          168 CCLETEVPLLVNEFVKLPT--------------ISWEVRIRIAAETA----------------EDIKSINILLDDNYTTK  217 (256)
Q Consensus       168 ~~~~~~~~~lv~e~~~~~~--------------l~~~~~~~~~~~i~----------------rdlk~~NiLi~~~~~~k  217 (256)
                      ++...+..+++|||+++++              +++.....++.+++                +||||+|||++.++.+|
T Consensus        95 ~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~ivH~Dlkp~Nil~~~~~~~k  174 (326)
T 3uim_A           95 FCMTPTERLLVYPYMANGSVASCLRERPESQPPLDWPKRQRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAV  174 (326)
T ss_dssp             EECCSSCCEEEEECCTTCBHHHHHHCCSTTCCCCCHHHHHHHHHHHHHHHHHHHHSSSSCEECCCCSGGGEEECTTCCEE
T ss_pred             EEecCCceEEEEEeccCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeCCCchhhEEECCCCCEE
Confidence            9999999999999998865              45555555655544                69999999999999999


Q ss_pred             EEecCCceecCCCCceeeeeeeecccc----cccccCCCCCCC
Q 047066          218 VCDFGASKLVPIDETQLSTMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       218 i~DFGla~~~~~~~~~~~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      |+|||+++..............||+.|    .+.++.++.++|
T Consensus       175 l~Dfg~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~D  217 (326)
T 3uim_A          175 VGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTD  217 (326)
T ss_dssp             ECCCSSCEECCSSSSCEECCCCSCGGGCCHHHHHHSEECHHHH
T ss_pred             eccCccccccCcccccccccccCCcCccCHHHhccCCCCcccc
Confidence            999999998765555555556699999    444556666655

>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...

Probab=99.92  E-value=9.5e-25  Score=186.18  Aligned_cols=153  Identities=23%  Similarity=0.275  Sum_probs=124.3

Q ss_pred             cCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEeccc---ChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEE
Q 047066          103 TNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIV---YQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLV  178 (256)
Q Consensus       103 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv  178 (256)
                      .++|++.+.||+|+||+||+|..+ +++.||+|.++..   .......+.+|+.+++.++||||+++++++...+..++|
T Consensus         4 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~l~~~~~~~~~~~lv   83 (337)
T 1o6l_A            4 MNDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLCFV   83 (337)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCCTTBCCEEEEEECSSEEEEE
T ss_pred             hHHeEEEEEEecCCCeEEEEEEECCCCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHhCCCCcCcceEEEEEeCCEEEEE
Confidence            367999999999999999999976 6899999988643   233456789999999999999999999999999999999


Q ss_pred             EecCCCCCC----------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceee
Q 047066          179 NEFVKLPTI----------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLS  235 (256)
Q Consensus       179 ~e~~~~~~l----------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~  235 (256)
                      |||+++++|          +......++.+++             |||||+|||++.++.+||+|||+|+....... ..
T Consensus        84 ~E~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~g~vkL~DFG~a~~~~~~~~-~~  162 (337)
T 1o6l_A           84 MEYANGGELFFHLSRERVFTEERARFYGAEIVSALEYLHSRDVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGA-TM  162 (337)
T ss_dssp             EECCTTCBHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTSCEEECCCTTCBCSCCTTC-CB
T ss_pred             EeCCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeecCcCCHHHEEECCCCCEEEeeccchhhcccCCC-cc
Confidence            999999765          4444455555544             69999999999999999999999986433322 23


Q ss_pred             eeeeecccc----cccccCCCCCCC
Q 047066          236 TMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       236 ~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      ...+||+.|    .+.+..++.++|
T Consensus       163 ~~~~gt~~y~aPE~~~~~~~~~~~D  187 (337)
T 1o6l_A          163 KTFCGTPEYLAPEVLEDNDYGRAVD  187 (337)
T ss_dssp             CCCEECGGGCCGGGGSSSCBCTTHH
T ss_pred             cccccChhhCChhhhcCCCCCchhh
Confidence            446799999    555667787776

>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}

Probab=99.92  E-value=3.3e-25  Score=193.80  Aligned_cols=149  Identities=23%  Similarity=0.264  Sum_probs=121.7

Q ss_pred             hHHHHhhcCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC---hhHHHHHHHHHHHHHhCCCCcccceeeEEEE
Q 047066           96 AGELKIATNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY---QSQIEQCINKVVVLSQINHRNVVGLLGCCLE  171 (256)
Q Consensus        96 ~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~  171 (256)
                      ..+.....++|++.+.||+|+||+||+++.+ +++.||+|.+....   ....+.+.+|..++..++||||+++++++.+
T Consensus        53 ~~~~~~~~~~f~~~~~lG~G~fG~V~~~~~~~~~~~vAiK~l~k~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~~~  132 (412)
T 2vd5_A           53 LKEVRLQRDDFEILKVIGRGAFSEVAVVKMKQTGQVYAMKIMNKWDMLKRGEVSCFREERDVLVNGDRRWITQLHFAFQD  132 (412)
T ss_dssp             HHHHSCCGGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHHGGGCCHHHHHHHHHHSCTTTBCCEEEEEEC
T ss_pred             hhhccCChhhEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHhcCCCCeeeEEEEEee
Confidence            3455666789999999999999999999975 68999999986422   2233457899999999999999999999999


Q ss_pred             CCEEEEEEecCCCCCC-----------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceec
Q 047066          172 TEVPLLVNEFVKLPTI-----------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLV  227 (256)
Q Consensus       172 ~~~~~lv~e~~~~~~l-----------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~  227 (256)
                      .+..++||||+++|+|           ++.....++.+++             |||||+|||++.++.+||+|||+|+..
T Consensus       133 ~~~~~lVmE~~~gg~L~~~l~~~~~~l~~~~~~~~~~qi~~aL~~LH~~giiHrDLKp~NILld~~g~vkL~DFGla~~~  212 (412)
T 2vd5_A          133 ENYLYLVMEYYVGGDLLTLLSKFGERIPAEMARFYLAEIVMAIDSVHRLGYVHRDIKPDNILLDRCGHIRLADFGSCLKL  212 (412)
T ss_dssp             SSEEEEEECCCCSCBHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEEC
T ss_pred             CCEEEEEEcCCCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCeeecccCHHHeeecCCCCEEEeechhheec
Confidence            9999999999988664           4444455555544             699999999999999999999999987


Q ss_pred             CCCCceeeeeeeecccc
Q 047066          228 PIDETQLSTMVQGTLGY  244 (256)
Q Consensus       228 ~~~~~~~~~~~~Gt~~y  244 (256)
                      ..+........+||+.|
T Consensus       213 ~~~~~~~~~~~~Gt~~Y  229 (412)
T 2vd5_A          213 RADGTVRSLVAVGTPDY  229 (412)
T ss_dssp             CTTSCEECSSCCSCGGG
T ss_pred             cCCCccccceeccccCc
Confidence            65544444456799999

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...

Probab=99.92  E-value=3.1e-25  Score=196.32  Aligned_cols=161  Identities=21%  Similarity=0.365  Sum_probs=123.4

Q ss_pred             cChHHHHhhcCCCcccceeeeeCceEEEEEEECCCcEEEEEEecccChhHHHHHHHHHHHHHhCCCCcccceeeEEEECC
Q 047066           94 FTAGELKIATNNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLETE  173 (256)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~  173 (256)
                      .....|++..++|++.+.||+|+||.||+|.++++..||+|.++.... ..+.+.+|+.++++++||||+++++++.. +
T Consensus       174 ~~~~~~~i~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~hp~iv~~~~~~~~-~  251 (452)
T 1fmk_A          174 LAKDAWEIPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTM-SPEAFLQEAQVMKKLRHEKLVQLYAVVSE-E  251 (452)
T ss_dssp             SSTTCSBCCGGGEEEEEEEEECSSCEEEEEEETTTEEEEEEECCTTSS-CHHHHHHHHHHHHHCCCTTBCCEEEEECS-S
T ss_pred             CCccccccChhHceeeeeecCCCCeEEEEEEECCCceEEEEEeccCCC-CHHHHHHHHHHHHhCCCCCEeeEEEEEcC-C
Confidence            345668888899999999999999999999998888899999875442 34679999999999999999999999876 6


Q ss_pred             EEEEEEecCCCCCC------------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecC
Q 047066          174 VPLLVNEFVKLPTI------------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVP  228 (256)
Q Consensus       174 ~~~lv~e~~~~~~l------------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~  228 (256)
                      ..++||||+++++|            ++.....++.|++             |||||+|||+++++.+||+|||+++...
T Consensus       252 ~~~iv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~  331 (452)
T 1fmk_A          252 PIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIE  331 (452)
T ss_dssp             SCEEEECCCTTCBHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGGCEEECCCCTTC---
T ss_pred             ceEEEehhhcCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCChhhEEECCCCCEEECCCccceecC
Confidence            68999999998764            4455566666665             6999999999999999999999999875


Q ss_pred             CCCceeeeeeeecccc----cccccCCCCCCC
Q 047066          229 IDETQLSTMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       229 ~~~~~~~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      .+.........||+.|    .+.++.++.++|
T Consensus       332 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sD  363 (452)
T 1fmk_A          332 DNEYTARQGAKFPIKWTAPEAALYGRFTIKSD  363 (452)
T ss_dssp             -----------CCGGGSCHHHHHHCCCCHHHH
T ss_pred             CCceecccCCcccccccCHhHHhcCCCCcccc
Confidence            4433333344577888    555667777765

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*

Probab=99.92  E-value=2.4e-24  Score=182.39  Aligned_cols=150  Identities=25%  Similarity=0.273  Sum_probs=125.1

Q ss_pred             CcccceeeeeCceEEEEEEEC-CCcEEEEEEecccChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEecCCC
Q 047066          106 YAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEFVKL  184 (256)
Q Consensus       106 ~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~~  184 (256)
                      |...+.||+|+||.||+|... +++.||+|.+........+.+.+|+.+++.++||||+++++++...+..+++|||+++
T Consensus        47 ~~~~~~lg~G~~g~V~~a~~~~~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~  126 (321)
T 2c30_A           47 LDSYVKIGEGSTGIVCLAREKHSGRQVAVKMMDLRKQQRRELLFNEVVIMRDYQHFNVVEMYKSYLVGEELWVLMEFLQG  126 (321)
T ss_dssp             EEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCSHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEECCCCS
T ss_pred             hhccEEeccCCCeEEEEEEECCCCcEEEEEEEeccchhHHHHHHHHHHHHHhCCCCCcceEEEEEEECCEEEEEEecCCC
Confidence            666779999999999999976 7999999998766555667899999999999999999999999999999999999988


Q ss_pred             CC---------CCHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceeeeeeeecc
Q 047066          185 PT---------ISWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTL  242 (256)
Q Consensus       185 ~~---------l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~~~~Gt~  242 (256)
                      ++         +++.....++.+++             +||||+|||++.++.+||+|||+++....+... .....||+
T Consensus       127 ~~L~~~l~~~~l~~~~~~~i~~qi~~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~~~~~~~-~~~~~gt~  205 (321)
T 2c30_A          127 GALTDIVSQVRLNEEQIATVCEAVLQALAYLHAQGVIHRDIKSDSILLTLDGRVKLSDFGFCAQISKDVPK-RKSLVGTP  205 (321)
T ss_dssp             CBHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTCCEEECCCTTCEECCSSSCC-BCCCCSCG
T ss_pred             CCHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEECCCCcEEEeeeeeeeecccCccc-cccccCCc
Confidence            65         46666677777766             599999999999999999999999887543322 23456999


Q ss_pred             cc----cccccCCCCCCC
Q 047066          243 GY----YLHTSQGTLNKE  256 (256)
Q Consensus       243 ~y----~~~~~~~t~ksD  256 (256)
                      .|    .+.++.++.++|
T Consensus       206 ~y~aPE~~~~~~~~~~~D  223 (321)
T 2c30_A          206 YWMAPEVISRSLYATEVD  223 (321)
T ss_dssp             GGCCHHHHTTCCBCTHHH
T ss_pred             cccCHhhhcCCCCCchhh
Confidence            99    555666777665

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp}

Probab=99.92  E-value=3.3e-24  Score=179.26  Aligned_cols=154  Identities=29%  Similarity=0.391  Sum_probs=119.5

Q ss_pred             cCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEeccc---ChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEE
Q 047066          103 TNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIV---YQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLV  178 (256)
Q Consensus       103 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv  178 (256)
                      .++|++.+.||+|+||.||++... ++..||+|.+...   .....+.+.+|+.+++.++||||+++++++...+..+++
T Consensus        10 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv   89 (294)
T 4eqm_A           10 NERYKIVDKLGGGGMSTVYLAEDTILNIKVAIKAIFIPPREKEETLKRFEREVHNSSQLSHQNIVSMIDVDEEDDCYYLV   89 (294)
T ss_dssp             ETTEEEEEEEEEETTEEEEEEEETTTCSEEEEEEEECCSSCCHHHHHHHHHHHHHHTTCCBTTBCCEEEEEECSSEEEEE
T ss_pred             hccEEEEEEEccCCCEEEEEEEECCCCCeEEEEEeccCccccHHHHHHHHHHHHHHhcCCCCCCceEEEeeeeCCeEEEE
Confidence            468999999999999999999975 6889999987432   244457889999999999999999999999999999999


Q ss_pred             EecCCCCCC----------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceee
Q 047066          179 NEFVKLPTI----------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLS  235 (256)
Q Consensus       179 ~e~~~~~~l----------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~  235 (256)
                      |||+++++|          ++.....++.+++             +||||+|||++.++.+||+|||+++..........
T Consensus        90 ~e~~~g~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~  169 (294)
T 4eqm_A           90 MEYIEGPTLSEYIESHGPLSVDTAINFTNQILDGIKHAHDMRIVHRDIKPQNILIDSNKTLKIFDFGIAKALSETSLTQT  169 (294)
T ss_dssp             EECCCSCBHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTSCEEECCCSSSTTC--------
T ss_pred             EeCCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCCEEEEeCCCcccccccccccc
Confidence            999998664          5555566666655             69999999999999999999999987754443434


Q ss_pred             eeeeecccc----cccccCCCCCCC
Q 047066          236 TMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       236 ~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      ....||+.|    .+.+..++.++|
T Consensus       170 ~~~~gt~~y~aPE~~~~~~~~~~~D  194 (294)
T 4eqm_A          170 NHVLGTVQYFSPEQAKGEATDECTD  194 (294)
T ss_dssp             -----CCSSCCHHHHHTCCCCTTHH
T ss_pred             CccccCccccCHhHhcCCCCCchHh
Confidence            456799999    555666777765

>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*

Probab=99.92  E-value=5.2e-25  Score=192.39  Aligned_cols=148  Identities=23%  Similarity=0.269  Sum_probs=120.5

Q ss_pred             HHHHhhcCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC---hhHHHHHHHHHHHHHhCCCCcccceeeEEEEC
Q 047066           97 GELKIATNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY---QSQIEQCINKVVVLSQINHRNVVGLLGCCLET  172 (256)
Q Consensus        97 ~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~  172 (256)
                      .++....++|++.+.||+|+||+||+|..+ +++.+|+|.+....   ....+.+.+|..+++.++||||+++++++.+.
T Consensus        62 ~~~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~k~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~  141 (410)
T 3v8s_A           62 RDLRMKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFYAFQDD  141 (410)
T ss_dssp             HHHSCCGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTCCCSTHHHHHHHHHHCCCTTBCCEEEEEECS
T ss_pred             HhcccCccccEEEEEEEcCCCEEEEEEEECCCCcEEEEEEEehhhhhhhHHHHHHHHHHHHHHhCCCCCCCeEEEEEEEC
Confidence            345556688999999999999999999976 58899999885421   12224578999999999999999999999999


Q ss_pred             CEEEEEEecCCCCCC---------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCC
Q 047066          173 EVPLLVNEFVKLPTI---------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPID  230 (256)
Q Consensus       173 ~~~~lv~e~~~~~~l---------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~  230 (256)
                      +..++||||+++|+|         ++.....++.+++             |||||+|||++.++.+||+|||+|+.+...
T Consensus       142 ~~~~lV~E~~~gg~L~~~l~~~~~~e~~~~~~~~qi~~aL~~LH~~givHrDLKp~NILl~~~g~ikL~DFG~a~~~~~~  221 (410)
T 3v8s_A          142 RYLYMVMEYMPGGDLVNLMSNYDVPEKWARFYTAEVVLALDAIHSMGFIHRDVKPDNMLLDKSGHLKLADFGTCMKMNKE  221 (410)
T ss_dssp             SEEEEEECCCTTEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEECCTT
T ss_pred             CEEEEEEeCCCCCcHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeEeccCCHHHeeECCCCCEEEeccceeEeeccC
Confidence            999999999998665         4444555555544             699999999999999999999999987655


Q ss_pred             Cceeeeeeeecccc
Q 047066          231 ETQLSTMVQGTLGY  244 (256)
Q Consensus       231 ~~~~~~~~~Gt~~y  244 (256)
                      ........+||+.|
T Consensus       222 ~~~~~~~~~gt~~Y  235 (410)
T 3v8s_A          222 GMVRCDTAVGTPDY  235 (410)
T ss_dssp             SEEECCSCCSCGGG
T ss_pred             CcccccCCcCCccc
Confidence            44444456799999

>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}

Probab=99.92  E-value=1e-24  Score=187.09  Aligned_cols=155  Identities=25%  Similarity=0.327  Sum_probs=118.6

Q ss_pred             hhcCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEeccc---ChhHHHHHHHHHHHHHhC-CCCcccceeeEEEECCEE
Q 047066          101 IATNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIV---YQSQIEQCINKVVVLSQI-NHRNVVGLLGCCLETEVP  175 (256)
Q Consensus       101 ~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~  175 (256)
                      ...++|++.+.||+|+||+||+|..+ +++.||+|.++..   .....+.+.+|..++..+ +||||+++++++.+.+..
T Consensus        20 ~~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AvK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~~~   99 (353)
T 3txo_A           20 LGIDNFEFIRVLGKGSFGKVMLARVKETGDLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLFCCFQTPDRL   99 (353)
T ss_dssp             ---CCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHHTTHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEE
T ss_pred             CchhheEEEEEEeeCCCEEEEEEEEcCCCCEEEEEEEEHHHhcchhHHHHHHHHHHHHHhccCCCceeeEEEEEEeCCEE
Confidence            44578999999999999999999976 5889999988643   233456788999999988 799999999999999999


Q ss_pred             EEEEecCCCCCC----------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCc
Q 047066          176 LLVNEFVKLPTI----------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDET  232 (256)
Q Consensus       176 ~lv~e~~~~~~l----------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~  232 (256)
                      ++||||+++++|          ++.....++.+++             |||||+|||++.++.+||+|||+|+...... 
T Consensus       100 ~lv~E~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~givHrDlkp~NILl~~~g~ikL~DFG~a~~~~~~~-  178 (353)
T 3txo_A          100 FFVMEFVNGGDLMFHIQKSRRFDEARARFYAAEIISALMFLHDKGIIYRDLKLDNVLLDHEGHCKLADFGMCKEGICNG-  178 (353)
T ss_dssp             EEEEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTSCEEECCCTTCBCSCC---
T ss_pred             EEEEeCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCCcccCCCHHHEEECCCCCEEEccccceeecccCC-
Confidence            999999998765          4444555555544             6999999999999999999999998643322 


Q ss_pred             eeeeeeeecccc----cccccCCCCCCC
Q 047066          233 QLSTMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       233 ~~~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      ......+||+.|    .+.+..++.++|
T Consensus       179 ~~~~~~~gt~~y~aPE~~~~~~~~~~~D  206 (353)
T 3txo_A          179 VTTATFCGTPDYIAPEILQEMLYGPAVD  206 (353)
T ss_dssp             -------CCGGGCCHHHHHHHHCTTHHH
T ss_pred             ccccccCCCcCeEChhhcCCCCcCCccC
Confidence            223456799999    455556666655

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B

Probab=99.91  E-value=2.9e-25  Score=196.61  Aligned_cols=161  Identities=17%  Similarity=0.354  Sum_probs=128.8

Q ss_pred             cChHHHHhhcCCCcccceeeeeCceEEEEEEECCCcEEEEEEecccChhHHHHHHHHHHHHHhCCCCcccceeeEEEECC
Q 047066           94 FTAGELKIATNNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLETE  173 (256)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~  173 (256)
                      +..+.|++..++|++.+.||+|+||.||+|.++++..||+|.++... ...+.+.+|+.+++.++||||+++++++. .+
T Consensus       178 ~~~~~~~i~~~~~~~~~~lG~G~fg~V~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~h~~iv~l~~~~~-~~  255 (454)
T 1qcf_A          178 WEKDAWEIPRESLKLEKKLGAGQFGEVWMATYNKHTKVAVKTMKPGS-MSVEAFLAEANVMKTLQHDKLVKLHAVVT-KE  255 (454)
T ss_dssp             CCTTCSBCCGGGEEEEEEEECCSSEEEEEEEETTTEEEEEEEECTTS-BCHHHHHHHHHHHTTCCCTTBCCEEEEEC-SS
T ss_pred             ccccceeechHHeEEEEEcccCCceEEEEEEECCccEEEEEEecCCC-ccHHHHHHHHHHHhhCCCCCEeeEEEEEe-CC
Confidence            44567888999999999999999999999999888999999987544 34578999999999999999999999986 56


Q ss_pred             EEEEEEecCCCCCC------------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecC
Q 047066          174 VPLLVNEFVKLPTI------------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVP  228 (256)
Q Consensus       174 ~~~lv~e~~~~~~l------------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~  228 (256)
                      ..++||||+.+|+|            ++...+.++.|++             |||||+|||++.++.+||+|||+|+...
T Consensus       256 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~ivHrDlkp~Nill~~~~~~kl~DFG~a~~~~  335 (454)
T 1qcf_A          256 PIYIITEFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIEQRNYIHRDLRAANILVSASLVCKIADFGLARVIE  335 (454)
T ss_dssp             SCEEEECCCTTCBHHHHHHSHHHHTCCHHHHHHHHHHHHHHHHHHHHTTCCCSSCSGGGEEECTTCCEEECSTTGGGGBC
T ss_pred             ccEEEEeecCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHhCCccCCCCCHHHEEECCCCcEEEeeCCCceEcC
Confidence            78999999999775            3344455666655             6999999999999999999999998765


Q ss_pred             CCCceeeeeeeecccc----cccccCCCCCCC
Q 047066          229 IDETQLSTMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       229 ~~~~~~~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      .+.........+|+.|    .+..+.++.++|
T Consensus       336 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~D  367 (454)
T 1qcf_A          336 DNEYTAREGAKFPIKWTAPEAINFGSFTIKSD  367 (454)
T ss_dssp             CHHHHTTCSSSSCGGGSCHHHHHHCCCCHHHH
T ss_pred             CCceeccCCCcccccccCHHHhccCCCCcHHH
Confidence            4322222233467778    555667777665

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus}

Probab=99.91  E-value=2e-24  Score=182.77  Aligned_cols=153  Identities=25%  Similarity=0.364  Sum_probs=119.2

Q ss_pred             CCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC-hhHHHHHHHHHHHHHhCCCCcccceeeEEEECC--------
Q 047066          104 NNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY-QSQIEQCINKVVVLSQINHRNVVGLLGCCLETE--------  173 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~--------  173 (256)
                      ++|++.+.||+|+||.||+|..+ +++.||+|.+.... ....+.+.+|+.++++++||||+++++++.+.+        
T Consensus         6 ~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~~   85 (332)
T 3qd2_B            6 TDFEPIQCMGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFNAWLETPPEKWQEEM   85 (332)
T ss_dssp             HHEEEEEEEECC-CSEEEEEEETTTCCEEEEEEEECCSTTTHHHHHHHHHHHHTSCCCTTBCCEEEEEEECCSCHHHHHH
T ss_pred             hcCceeeEecCCCCeEEEEEEEcCCCcEEEEEEeecCCchhHHHHHHHHHHHHHhCCCCCEeeEEEEEEEeccchhhhhh
Confidence            56889999999999999999986 78999999986443 445578999999999999999999999987643        


Q ss_pred             -------------------------------------------------EEEEEEecCCCCCCCH-------------HH
Q 047066          174 -------------------------------------------------VPLLVNEFVKLPTISW-------------EV  191 (256)
Q Consensus       174 -------------------------------------------------~~~lv~e~~~~~~l~~-------------~~  191 (256)
                                                                       ..+++|||+++++|..             ..
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~  165 (332)
T 3qd2_B           86 DEIWLKDESTDWPLSSPSPMDAPSVKIRRMDPFSTKNTVGQLQPSSPKVYLYIQMQLCRKENLKDWMNRRCSLEDREHGV  165 (332)
T ss_dssp             HC--------------------------------------------CCCEEEEEEECCCSSCHHHHHHTCCSGGGSCHHH
T ss_pred             hhhhhccccccccccCCCcccccccceeeccccCcccccccccCCCCCceEEEEEEecCCCCHHHHHhcccCccchhhHH
Confidence                                                             3899999999987643             22


Q ss_pred             HHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCce-----------eeeeeeecccc---
Q 047066          192 RIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQ-----------LSTMVQGTLGY---  244 (256)
Q Consensus       192 ~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~-----------~~~~~~Gt~~y---  244 (256)
                      ...++.|++             +||||+|||++.++.+||+|||+++........           ......||+.|   
T Consensus       166 ~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aP  245 (332)
T 3qd2_B          166 CLHIFIQIAEAVEFLHSKGLMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVLTPMPAYATHTGQVGTKLYMSP  245 (332)
T ss_dssp             HHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCTTCEECSCC--------------CCCSCC-CGGGSCH
T ss_pred             HHHHHHHHHHHHHHHHhCCeeecCCCcccEEEeCCCCEEEeecCcccccccchhhccccccccccccccccCCCcCccCh
Confidence            455555554             699999999999999999999999987654221           12334699999   


Q ss_pred             -cccccCCCCCCC
Q 047066          245 -YLHTSQGTLNKE  256 (256)
Q Consensus       245 -~~~~~~~t~ksD  256 (256)
                       .+.+..++.++|
T Consensus       246 E~~~~~~~~~~~D  258 (332)
T 3qd2_B          246 EQIHGNNYSHKVD  258 (332)
T ss_dssp             HHHHCCCCCTHHH
T ss_pred             HHhcCCCCcchhh
Confidence             555667777766

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*

Probab=99.91  E-value=1.8e-24  Score=182.24  Aligned_cols=161  Identities=24%  Similarity=0.405  Sum_probs=117.5

Q ss_pred             cChHHHHhhcCCCcccceeeeeCceEEEEEEECCCcEEEEEEecccC--hhHHHHHHHHHHHHHhCCCCcccceeeEEEE
Q 047066           94 FTAGELKIATNNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVY--QSQIEQCINKVVVLSQINHRNVVGLLGCCLE  171 (256)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~  171 (256)
                      .....+.+..++|++.+.||+|+||.||+|.. +++.||+|.+....  ....+.+.+|+.++++++||||+++++++..
T Consensus        27 ~~~~~~~i~~~~y~i~~~lG~G~~g~V~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~  105 (309)
T 3p86_A           27 MDGDDMDIPWCDLNIKEKIGAGSFGTVHRAEW-HGSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIVLFMGAVTQ  105 (309)
T ss_dssp             -----CBCCGGGEEEEEEEEECSSEEEEEEEE-TTEEEEEEEECCCCCSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECS
T ss_pred             CCcccccCChhHceeeeEeecCCCeEEEEEEE-CCCcEEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEE
Confidence            34455667778999999999999999999987 68899999886543  4455789999999999999999999999999


Q ss_pred             CCEEEEEEecCCCCCC-------------CHHHHHHHHHHHH---------------hccCCCcEEEcCCCcEEEEecCC
Q 047066          172 TEVPLLVNEFVKLPTI-------------SWEVRIRIAAETA---------------EDIKSINILLDDNYTTKVCDFGA  223 (256)
Q Consensus       172 ~~~~~lv~e~~~~~~l-------------~~~~~~~~~~~i~---------------rdlk~~NiLi~~~~~~ki~DFGl  223 (256)
                      .+..++||||+++++|             ++.....++.|++               +||||+|||++.++.+||+|||+
T Consensus       106 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~~~ivH~Dikp~NIll~~~~~~kL~Dfg~  185 (309)
T 3p86_A          106 PPNLSIVTEYLSRGSLYRLLHKSGAREQLDERRRLSMAYDVAKGMNYLHNRNPPIVHRNLKSPNLLVDKKYTVKVCDFGL  185 (309)
T ss_dssp             TTCCEEEEECCTTCBHHHHHHSTTHHHHSCHHHHHHHHHHHHHHHHHHHTSSSCCCCTTCCGGGEEECTTCCEEECCCC-
T ss_pred             CCceEEEEecCCCCcHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCEECCCCChhhEEEeCCCcEEECCCCC
Confidence            9999999999998765             3444445554443               69999999999999999999999


Q ss_pred             ceecCCCCceeeeeeeecccc----cccccCCCCCCC
Q 047066          224 SKLVPIDETQLSTMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       224 a~~~~~~~~~~~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      ++....... ......||+.|    .+.+..++.++|
T Consensus       186 a~~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~D  221 (309)
T 3p86_A          186 SRLKASTFL-SSKSAAGTPEWMAPEVLRDEPSNEKSD  221 (309)
T ss_dssp             -----------------CCTTSCHHHHTTCCCCTTHH
T ss_pred             Ccccccccc-ccccCCCCccccChhhhcCCCCCchhh
Confidence            986543322 23345699999    555666777776

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A*

Probab=99.91  E-value=2.1e-24  Score=177.73  Aligned_cols=156  Identities=17%  Similarity=0.292  Sum_probs=126.4

Q ss_pred             HhhcCCCcccceeeeeCceEEEEEEECCCcEEEEEEecccChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEE
Q 047066          100 KIATNNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVN  179 (256)
Q Consensus       100 ~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~  179 (256)
                      ++..++|++.+.||+|+||.||+|..+++..||+|.+..... ..+++.+|+.++..++||||+++++++...+..+++|
T Consensus         4 ~l~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~   82 (268)
T 3sxs_A            4 ELKREEITLLKELGSGQFGVVKLGKWKGQYDVAVKMIKEGSM-SEDEFFQEAQTMMKLSHPKLVKFYGVCSKEYPIYIVT   82 (268)
T ss_dssp             BCCGGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECBTTB-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSEEEEE
T ss_pred             EechhheeeeeeeccCCCceEEEEEecCceeEEEEEeccCCC-cHHHHHHHHHHHHhCCCCCEeeEEEEEccCCceEEEE
Confidence            445678999999999999999999998888999999875443 2367899999999999999999999999999999999


Q ss_pred             ecCCCCCC-----------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceee
Q 047066          180 EFVKLPTI-----------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLS  235 (256)
Q Consensus       180 e~~~~~~l-----------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~  235 (256)
                      ||+++++|           ++.....++.+++             +||||+||+++.++.+||+|||+++....+.....
T Consensus        83 e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dikp~Nil~~~~~~~~l~Dfg~~~~~~~~~~~~~  162 (268)
T 3sxs_A           83 EYISNGCLLNYLRSHGKGLEPSQLLEMCYDVCEGMAFLESHQFIHRDLAARNCLVDRDLCVKVSDFGMTRYVLDDQYVSS  162 (268)
T ss_dssp             ECCTTCBHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHHTTEEESSCSGGGEEECTTCCEEECCTTCEEECCTTCEEEC
T ss_pred             EccCCCcHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCcCcceEEECCCCCEEEccCccceecchhhhhcc
Confidence            99988754           5555666666665             59999999999999999999999998765544433


Q ss_pred             eeeeecccc----cccccCCCCCCC
Q 047066          236 TMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       236 ~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      ....||+.|    .+.+..++.++|
T Consensus       163 ~~~~~~~~y~aPE~~~~~~~~~~~D  187 (268)
T 3sxs_A          163 VGTKFPVKWSAPEVFHYFKYSSKSD  187 (268)
T ss_dssp             CSCCCCGGGCCHHHHHHSEEETTHH
T ss_pred             cCCCcCcccCCHHHHhccCCchhhh
Confidence            444567778    444556666665

>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A

Probab=99.91  E-value=9.9e-24  Score=175.94  Aligned_cols=152  Identities=23%  Similarity=0.321  Sum_probs=123.9

Q ss_pred             CCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC--hhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEe
Q 047066          104 NNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY--QSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNE  180 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e  180 (256)
                      ++|++.+.||+|+||.||+|... +++.||+|.+....  ....+.+.+|+.+++.++||||+++++++.+.+..++|||
T Consensus         2 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e   81 (292)
T 3o0g_A            2 QKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLVFE   81 (292)
T ss_dssp             CSEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEESSCSSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             CCceeeeEecCCCCeEEEEEEECCCCceEEEEeeeccCCcCCcchHHHHHHHHHhcCCCCCEeeEEeEEEeCCEEEEEEe
Confidence            57899999999999999999975 68899999886433  3445778999999999999999999999999999999999


Q ss_pred             cCCC----------CCCCHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceeeee
Q 047066          181 FVKL----------PTISWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTM  237 (256)
Q Consensus       181 ~~~~----------~~l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~~  237 (256)
                      |+++          +.+++.....++.|++             +||||+|||++.++.+||+|||+++....+... ...
T Consensus        82 ~~~~~l~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lH~~~ivH~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~-~~~  160 (292)
T 3o0g_A           82 FCDQDLKKYFDSCNGDLDPEIVKSFLFQLLKGLGFCHSRNVLHRDLKPQNLLINRNGELKLANFGLARAFGIPVRC-YSA  160 (292)
T ss_dssp             CCSEEHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEECCSCCSC-CCS
T ss_pred             cCCCCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCCEEEeecccceecCCcccc-ccC
Confidence            9975          5677777777777766             699999999999999999999999987543322 233


Q ss_pred             eeecccc----cccccC-CCCCCC
Q 047066          238 VQGTLGY----YLHTSQ-GTLNKE  256 (256)
Q Consensus       238 ~~Gt~~y----~~~~~~-~t~ksD  256 (256)
                      ..||+.|    .+.+.. ++.++|
T Consensus       161 ~~~t~~y~aPE~~~~~~~~~~~~D  184 (292)
T 3o0g_A          161 EVVTLWYRPPDVLFGAKLYSTSID  184 (292)
T ss_dssp             CCSCGGGCCHHHHTTCSCCCTHHH
T ss_pred             CccccCCcChHHHcCCCCcCchHH
Confidence            4689999    333333 677665

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A

Probab=99.91  E-value=4.4e-24  Score=181.42  Aligned_cols=152  Identities=20%  Similarity=0.305  Sum_probs=122.4

Q ss_pred             cCCCcccceeeeeCceEEEEEEE-CCCcEEEEEEeccc--ChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEE
Q 047066          103 TNNYAYDRMIGRGGYGTVFLGSL-SDNKAIAIKKSRIV--YQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVN  179 (256)
Q Consensus       103 ~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~  179 (256)
                      .++|++.+.||+|+||.||+|.. .+++.||+|.+...  .....+.+.+|+.+++.++||||+++++++...+..++||
T Consensus        14 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~lv~   93 (328)
T 3fe3_A           14 IGNYRLLKTIGKGNFAKVKLARHILTGREVAIKIIDKTQLNPTSLQKLFREVRIMKILNHPNIVKLFEVIETEKTLYLIM   93 (328)
T ss_dssp             ETTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             cCCEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhhcCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCEEEEEE
Confidence            46899999999999999999997 47899999988643  3455678899999999999999999999999999999999


Q ss_pred             ecCCCCCC----------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceeee
Q 047066          180 EFVKLPTI----------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLST  236 (256)
Q Consensus       180 e~~~~~~l----------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~  236 (256)
                      ||+++++|          +......++.|++             |||||+|||++.++.+||+|||+++.......  ..
T Consensus        94 e~~~~~~L~~~l~~~~~l~~~~~~~~~~qi~~al~~lH~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~--~~  171 (328)
T 3fe3_A           94 EYASGGEVFDYLVAHGRMKEKEARSKFRQIVSAVQYCHQKRIVHRDLKAENLLLDADMNIKIADFGFSNEFTVGGK--LD  171 (328)
T ss_dssp             CCCTTCBHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTSCEEECSTTCCGGGSSSCG--GG
T ss_pred             ECCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCEeccCCCHHHEEEcCCCCEEEeeccCceecCCCCc--cc
Confidence            99988664          4555555666555             69999999999999999999999987654322  23


Q ss_pred             eeeecccc----cccccCCC-CCCC
Q 047066          237 MVQGTLGY----YLHTSQGT-LNKE  256 (256)
Q Consensus       237 ~~~Gt~~y----~~~~~~~t-~ksD  256 (256)
                      ..+||+.|    .+.+..++ +++|
T Consensus       172 ~~~gt~~y~aPE~~~~~~~~~~~~D  196 (328)
T 3fe3_A          172 AFCGAPPYAAPELFQGKKYDGPEVD  196 (328)
T ss_dssp             TTSSSGGGCCHHHHHTCCCCSHHHH
T ss_pred             cccCCcceeCcccccCCCcCCchhh
Confidence            45699999    44444443 4444

>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}

Probab=99.91  E-value=2.4e-24  Score=187.39  Aligned_cols=155  Identities=25%  Similarity=0.337  Sum_probs=122.5

Q ss_pred             hhcCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC---hhHHHHHHHHHHHHHhC-CCCcccceeeEEEECCEE
Q 047066          101 IATNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY---QSQIEQCINKVVVLSQI-NHRNVVGLLGCCLETEVP  175 (256)
Q Consensus       101 ~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~  175 (256)
                      +..++|++.++||+|+||+||+|+.+ +++.+|+|.++...   ....+.+..|..++..+ +||||+++++++.+.+..
T Consensus        49 ~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AvK~~~k~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~~~  128 (396)
T 4dc2_A           49 LGLQDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMRVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRL  128 (396)
T ss_dssp             CCGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGTC----CCHHHHHHHHHHHHTTCTTBCCEEEEEECSSEE
T ss_pred             CChhHcEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhcCCCCCcCeeEEEEEECCEE
Confidence            34568999999999999999999976 57899999886432   23335688999999887 899999999999999999


Q ss_pred             EEEEecCCCCCC----------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCc
Q 047066          176 LLVNEFVKLPTI----------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDET  232 (256)
Q Consensus       176 ~lv~e~~~~~~l----------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~  232 (256)
                      ++||||+++|+|          ++.....++.+++             |||||+|||++.++.+||+|||+|+.......
T Consensus       129 ~lV~E~~~gg~L~~~l~~~~~l~~~~~~~~~~qi~~aL~~LH~~givHrDLKp~NILl~~~g~ikL~DFGla~~~~~~~~  208 (396)
T 4dc2_A          129 FFVIEYVNGGDLMFHMQRQRKLPEEHARFYSAEISLALNYLHERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPGD  208 (396)
T ss_dssp             EEEEECCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTSCEEECCCTTCBCCCCTTC
T ss_pred             EEEEEcCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCEEeccCCHHHEEECCCCCEEEeecceeeecccCCC
Confidence            999999999765          4555555665554             69999999999999999999999986432222


Q ss_pred             eeeeeeeecccc----cccccCCCCCCC
Q 047066          233 QLSTMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       233 ~~~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                       .....+||+.|    .+.+..++.++|
T Consensus       209 -~~~~~~gt~~Y~aPE~l~~~~~~~~~D  235 (396)
T 4dc2_A          209 -TTSTFCGTPNYIAPEILRGEDYGFSVD  235 (396)
T ss_dssp             -CBCCCCBCGGGCCHHHHTTCCBCTHHH
T ss_pred             -ccccccCCcccCCchhhcCCCCChHHH
Confidence             23446799999    555666776665

>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A*

Probab=99.91  E-value=3.2e-24  Score=183.42  Aligned_cols=156  Identities=25%  Similarity=0.348  Sum_probs=122.8

Q ss_pred             HhhcCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC---hhHHHHHHHHHHHHHhC-CCCcccceeeEEEECCE
Q 047066          100 KIATNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY---QSQIEQCINKVVVLSQI-NHRNVVGLLGCCLETEV  174 (256)
Q Consensus       100 ~~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~  174 (256)
                      ....++|.+.+.||+|+||.||+|..+ +++.||+|.++...   ....+.+..|..++..+ +||||+++++++.+.+.
T Consensus        13 ~~~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~iv~l~~~~~~~~~   92 (345)
T 1xjd_A           13 KLKIEDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQTKEN   92 (345)
T ss_dssp             ---CTTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTTBCCEEEEEECSSE
T ss_pred             CCChHHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhHHhhhhhhHHHHHHHHHHHHhcCCCCCCCcEEEEEEeCCE
Confidence            345578999999999999999999976 68899999886432   23456788899999877 99999999999999999


Q ss_pred             EEEEEecCCCCCC----------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCC
Q 047066          175 PLLVNEFVKLPTI----------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDE  231 (256)
Q Consensus       175 ~~lv~e~~~~~~l----------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~  231 (256)
                      .++||||+++|+|          ++.....++.|++             |||||+|||++.++.+||+|||+|+......
T Consensus        93 ~~lv~E~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~g~vkL~DFG~a~~~~~~~  172 (345)
T 1xjd_A           93 LFFVMEYLNGGDLMYHIQSCHKFDLSRATFYAAEIILGLQFLHSKGIVYRDLKLDNILLDKDGHIKIADFGMCKENMLGD  172 (345)
T ss_dssp             EEEEEECCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTSCEEECCCTTCBCCCCTT
T ss_pred             EEEEEeCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeEeCCCChhhEEECCCCCEEEeEChhhhhcccCC
Confidence            9999999998765          4444555555554             6999999999999999999999998653322


Q ss_pred             ceeeeeeeecccc----cccccCCCCCCC
Q 047066          232 TQLSTMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       232 ~~~~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      . .....+||+.|    .+.+..++.++|
T Consensus       173 ~-~~~~~~gt~~y~aPE~~~~~~~~~~~D  200 (345)
T 1xjd_A          173 A-KTNTFCGTPDYIAPEILLGQKYNHSVD  200 (345)
T ss_dssp             C-CBCCCCSCGGGCCHHHHTTCCBCTHHH
T ss_pred             C-cccCCCCCcccCChhhhcCCCCCChhh
Confidence            2 23446799999    455566777665

>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A*

Probab=99.91  E-value=5.6e-24  Score=179.32  Aligned_cols=154  Identities=22%  Similarity=0.307  Sum_probs=122.3

Q ss_pred             hcCCCcccceeeeeCceEEEEEEECCCcEEEEEEecccC--hhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEE
Q 047066          102 ATNNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVY--QSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVN  179 (256)
Q Consensus       102 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~  179 (256)
                      ..++|++.+.||+|+||.||+|...+++.||+|.+....  ......+.+|+.+++.++||||+++++++.+.+..++||
T Consensus        19 l~~~y~~~~~lG~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~   98 (311)
T 3niz_A           19 LMEKYQKLEKVGEGTYGVVYKAKDSQGRIVALKRIRLDAEDEGIPSTAIREISLLKELHHPNIVSLIDVIHSERCLTLVF   98 (311)
T ss_dssp             SSCEEEEEEEEEECSSCEEEEEEETTSCEEEEEEEC------CHHHHHHHHHHHHHHCCCTTBCCEEEEECCSSCEEEEE
T ss_pred             hHhhhHhhhhccCCCCeEEEEEEECCCCEEEEEEEecccccchhhHHHHHHHHHHHHcCCCCEeeeeeEEccCCEEEEEE
Confidence            347899999999999999999999889999999886433  333467889999999999999999999999999999999


Q ss_pred             ecCCC----------CCCCHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceeee
Q 047066          180 EFVKL----------PTISWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLST  236 (256)
Q Consensus       180 e~~~~----------~~l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~  236 (256)
                      ||+++          +.++......++.|++             +||||+|||++.++.+||+|||+++....+... .+
T Consensus        99 e~~~~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~~~~~-~~  177 (311)
T 3niz_A           99 EFMEKDLKKVLDENKTGLQDSQIKIYLYQLLRGVAHCHQHRILHRDLKPQNLLINSDGALKLADFGLARAFGIPVRS-YT  177 (311)
T ss_dssp             ECCSEEHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCTTCEETTSCCC----
T ss_pred             cCCCCCHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCchHhEEECCCCCEEEccCcCceecCCCccc-cc
Confidence            99975          3366777777776665             699999999999999999999999987543332 23


Q ss_pred             eeeecccc----ccc-ccCCCCCCC
Q 047066          237 MVQGTLGY----YLH-TSQGTLNKE  256 (256)
Q Consensus       237 ~~~Gt~~y----~~~-~~~~t~ksD  256 (256)
                      ...||+.|    .+. ...++.++|
T Consensus       178 ~~~~t~~y~aPE~~~~~~~~~~~~D  202 (311)
T 3niz_A          178 HEVVTLWYRAPDVLMGSKKYSTSVD  202 (311)
T ss_dssp             CCCCCCTTCCHHHHTTCCSCCTHHH
T ss_pred             CCcccCCcCCHHHhcCCCCCCchHH
Confidence            34689999    233 345677665

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*

Probab=99.91  E-value=5.3e-25  Score=190.43  Aligned_cols=163  Identities=23%  Similarity=0.375  Sum_probs=128.1

Q ss_pred             cChHHHHhhcCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC-hhHHHHHHHHHHHHHhCCCCcccceeeEEEE
Q 047066           94 FTAGELKIATNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY-QSQIEQCINKVVVLSQINHRNVVGLLGCCLE  171 (256)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~  171 (256)
                      .+.+.|.+..++|.+.+.||+|+||.||+|.++ +++.||+|.++... ....+.+.+|+.+++.++||||+++++++..
T Consensus       104 ~~~~~~~~~~~~~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~  183 (377)
T 3cbl_A          104 VPKDKWVLNHEDLVLGEQIGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVCTQ  183 (377)
T ss_dssp             CCCCTTBCCGGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEECCTTSCHHHHTTTTHHHHHHTTCCCTTBCCEEEEECS
T ss_pred             ccccccEEchHHeEEeeEeccCCCCeEEEEEEecCCeEEEEEEccccCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEec
Confidence            344567788889999999999999999999986 68899999886543 3445678999999999999999999999999


Q ss_pred             CCEEEEEEecCCCCCC-----------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceec
Q 047066          172 TEVPLLVNEFVKLPTI-----------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLV  227 (256)
Q Consensus       172 ~~~~~lv~e~~~~~~l-----------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~  227 (256)
                      .+..++||||+++++|           ++.....++.|++             |||||+|||++.++.+||+|||+|+..
T Consensus       184 ~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~ivHrDlkp~Nil~~~~~~~kl~DfG~s~~~  263 (377)
T 3cbl_A          184 KQPIYIVMELVQGGDFLTFLRTEGARLRVKTLLQMVGDAAAGMEYLESKCCIHRDLAARNCLVTEKNVLKISDFGMSREE  263 (377)
T ss_dssp             SSSCEEEEECCTTCBHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECCGGGCEEC
T ss_pred             CCCcEEEEEcCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCcCCcccCHHHEEEcCCCcEEECcCCCceec
Confidence            8999999999998764           4555566666655             699999999999999999999999875


Q ss_pred             CCCCceee-eeeeecccc----cccccCCCCCCC
Q 047066          228 PIDETQLS-TMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       228 ~~~~~~~~-~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      ........ ....+|+.|    .+.++.++.++|
T Consensus       264 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~D  297 (377)
T 3cbl_A          264 ADGVYAASGGLRQVPVKWTAPEALNYGRYSSESD  297 (377)
T ss_dssp             TTSEEECCSSCCEEEGGGSCHHHHHHCEEEHHHH
T ss_pred             CCCceeecCCCCCCCcCcCCHhHhccCCCCchhh
Confidence            43321111 122366777    444556666655

>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7

Probab=99.91  E-value=5.4e-24  Score=180.12  Aligned_cols=150  Identities=25%  Similarity=0.354  Sum_probs=122.7

Q ss_pred             cCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC---hhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEE
Q 047066          103 TNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY---QSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLV  178 (256)
Q Consensus       103 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv  178 (256)
                      .++|++.+.||+|+||.||++..+ +++.||+|.++...   ....+.+.+|..+++.++||||+++++++.+.+..++|
T Consensus         5 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~~~lv   84 (318)
T 1fot_A            5 LQDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWGTFQDAQQIFMI   84 (318)
T ss_dssp             GGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCBTTBCCEEEEEECSSEEEEE
T ss_pred             hHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHhhCCCCCCceEeEEEEeCCEEEEE
Confidence            367899999999999999999975 68999999886432   23456788999999999999999999999999999999


Q ss_pred             EecCCCCCC----------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceee
Q 047066          179 NEFVKLPTI----------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLS  235 (256)
Q Consensus       179 ~e~~~~~~l----------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~  235 (256)
                      |||+++++|          ++.....++.+++             |||||+|||++.++.+||+|||+++.....    .
T Consensus        85 ~e~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~g~~kL~Dfg~a~~~~~~----~  160 (318)
T 1fot_A           85 MDYIEGGELFSLLRKSQRFPNPVAKFYAAEVCLALEYLHSKDIIYRDLKPENILLDKNGHIKITDFGFAKYVPDV----T  160 (318)
T ss_dssp             ECCCCSCBHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHHTTTEECCCCCGGGEEECTTSCEEECCCSSCEECSSC----B
T ss_pred             EeCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCChheEEEcCCCCEEEeecCcceecCCc----c
Confidence            999998665          4445555555554             699999999999999999999999976432    2


Q ss_pred             eeeeecccc----cccccCCCCCCC
Q 047066          236 TMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       236 ~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      ...+||+.|    .+.+..++.++|
T Consensus       161 ~~~~gt~~y~aPE~~~~~~~~~~~D  185 (318)
T 1fot_A          161 YTLCGTPDYIAPEVVSTKPYNKSID  185 (318)
T ss_dssp             CCCCSCTTTCCHHHHTTCCBCTTHH
T ss_pred             ccccCCccccCHhHhcCCCCCcccc
Confidence            335699999    555667777766

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}

Probab=99.91  E-value=1.8e-24  Score=183.44  Aligned_cols=156  Identities=21%  Similarity=0.352  Sum_probs=120.3

Q ss_pred             hhcCCCcccceeeeeCceEEEEEEEC----CCcEEEEEEeccc-ChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEE
Q 047066          101 IATNNYAYDRMIGRGGYGTVFLGSLS----DNKAIAIKKSRIV-YQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVP  175 (256)
Q Consensus       101 ~~~~~~~~~~~lg~G~~g~V~~~~~~----~~~~vavK~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~  175 (256)
                      +..++|++.+.||+|+||.||+|...    .+..||+|.+... .....+.+.+|+.+++.++||||+++++++...+..
T Consensus        46 ~~~~~y~i~~~lG~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~  125 (325)
T 3kul_A           46 IEASRIHIEKIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGYTERQRRDFLSEASIMGQFDHPNIIRLEGVVTRGRLA  125 (325)
T ss_dssp             CCGGGEEEEEEEEETTTEEEEEEEECCTTSCCEEEEEEEECTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECGGGCC
T ss_pred             cChhHeEEeeEEEeCCCcEEEEEEEecCCCCCceEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCcc
Confidence            44578999999999999999999974    3456999998754 345567899999999999999999999999999999


Q ss_pred             EEEEecCCCCCC-----------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCC
Q 047066          176 LLVNEFVKLPTI-----------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDE  231 (256)
Q Consensus       176 ~lv~e~~~~~~l-----------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~  231 (256)
                      ++||||+++++|           ++.....++.+++             +||||+|||++.++.+||+|||+++....+.
T Consensus       126 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~  205 (325)
T 3kul_A          126 MIVTEYMENGSLDTFLRTHDGQFTIMQLVGMLRGVGAGMRYLSDLGYVHRDLAARNVLVDSNLVCKVSDFGLSRVLEDDP  205 (325)
T ss_dssp             EEEEECCTTCBHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECCCSSCEECC---
T ss_pred             EEEeeCCCCCcHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHCCeeCCCCCcceEEECCCCCEEECCCCcccccccCc
Confidence            999999988554           5556666666665             6999999999999999999999999875433


Q ss_pred             ce--eeeeeeecccc----cccccCCCCCCC
Q 047066          232 TQ--LSTMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       232 ~~--~~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      ..  ......||+.|    .+.+..++.++|
T Consensus       206 ~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~D  236 (325)
T 3kul_A          206 DAAYTTTGGKIPIRWTAPEAIAFRTFSSASD  236 (325)
T ss_dssp             -CCEECC---CCGGGSCHHHHHHCEECHHHH
T ss_pred             cceeeccCCCCcccccCHhHhcCCCCCcHHH
Confidence            22  12233467778    444455565554

>4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=99.90  E-value=1.1e-24  Score=179.63  Aligned_cols=158  Identities=27%  Similarity=0.374  Sum_probs=124.7

Q ss_pred             HHHhhcCCCcccceeeeeCceEEEEEEECCCcEEEEEEecccChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEE
Q 047066           98 ELKIATNNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLL  177 (256)
Q Consensus        98 ~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~l  177 (256)
                      .|.+..++|++.+.||+|+||.||+|...++..||+|.+...... .+++.+|+.++++++||||+++++++.+.+..++
T Consensus         4 ~~~i~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~-~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~l   82 (269)
T 4hcu_A            4 KWVIDPSELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAMS-EEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICL   82 (269)
T ss_dssp             -CBCCGGGEEEEEEEEECSSCEEEEEEETTTEEEEEEEECTTSBC-HHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEE
T ss_pred             cEEeChhhceeeheecCCCccEEEEEEecCCCeEEEEEecccccC-HHHHHHHHHHHHhCCCCCEeeEEEEEecCCceEE
Confidence            355566789999999999999999999988889999998754432 3678999999999999999999999999999999


Q ss_pred             EEecCCCCC-----------CCHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCce
Q 047066          178 VNEFVKLPT-----------ISWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQ  233 (256)
Q Consensus       178 v~e~~~~~~-----------l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~  233 (256)
                      +|||+++++           +++.....++.+++             +||||+||+++.++.+||+|||+++....+...
T Consensus        83 v~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~  162 (269)
T 4hcu_A           83 VFEFMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLEEACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYT  162 (269)
T ss_dssp             EEECCTTCBHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECGGGCEEECCTTGGGGBCCHHHH
T ss_pred             EEEeCCCCcHHHHHHhcCcccCHHHHHHHHHHHHHHHHHHHhCCeecCCcchheEEEcCCCCEEeccccccccccccccc
Confidence            999998865           45555566666655             599999999999999999999999876443222


Q ss_pred             eeeeeeecccc----cccccCCCCCCC
Q 047066          234 LSTMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       234 ~~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      ......||+.|    .+.+..++.++|
T Consensus       163 ~~~~~~~~~~y~aPE~~~~~~~~~~~D  189 (269)
T 4hcu_A          163 SSTGTKFPVKWASPEVFSFSRYSSKSD  189 (269)
T ss_dssp             STTSTTCCGGGCCHHHHHHCCCCHHHH
T ss_pred             cccCcccccccCCHHHhcCCCCCchhh
Confidence            22333467777    444556666554

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A

Probab=99.90  E-value=6.4e-25  Score=182.19  Aligned_cols=160  Identities=22%  Similarity=0.337  Sum_probs=124.0

Q ss_pred             hHHHHhhcCCCcccceeeeeCceEEEEEEECCCcEEEEEEecccChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEE
Q 047066           96 AGELKIATNNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVP  175 (256)
Q Consensus        96 ~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~  175 (256)
                      ...|.+..++|++.+.||+|+||.||++..+++..||+|.+...... .+++.+|+.++..++||||+++++++...+..
T Consensus        16 ~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~-~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~   94 (283)
T 3gen_A           16 YGSWEIDPKDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSMS-EDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPI   94 (283)
T ss_dssp             CCTTBCCGGGEEEEEECC---CEEEEEEEETTTEEEEEEEECTTSBC-HHHHHHHHHHHHTCCCTTBCCEEEEECSSSSE
T ss_pred             CCCccCCHHHHHhHhhcCCCCCceEEEEEEcCCCeEEEEEecCCCCC-HHHHHHHHHHHhcCCCCCEeeEEEEEecCCCe
Confidence            34566777899999999999999999999988889999998754432 36789999999999999999999999999999


Q ss_pred             EEEEecCCCCC-----------CCHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCC
Q 047066          176 LLVNEFVKLPT-----------ISWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDE  231 (256)
Q Consensus       176 ~lv~e~~~~~~-----------l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~  231 (256)
                      +++|||+++++           +++.....++.+++             +||||+|||++.++.+||+|||+++......
T Consensus        95 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~~~~  174 (283)
T 3gen_A           95 FIITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLESKQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDE  174 (283)
T ss_dssp             EEEECCCTTCBHHHHHHCGGGCCCHHHHHHHHHHHHHHHHHHHHTTCCCSSCSGGGEEECTTSCEEECSTTGGGGBCCHH
T ss_pred             EEEEeccCCCcHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHCCccCCCCccceEEEcCCCCEEEccccccccccccc
Confidence            99999998765           45566666666665             5999999999999999999999998764432


Q ss_pred             ceeeeeeeecccc----cccccCCCCCCC
Q 047066          232 TQLSTMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       232 ~~~~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      ........||+.|    .+.+..++.++|
T Consensus       175 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~D  203 (283)
T 3gen_A          175 YTSSVGSKFPVRWSPPEVLMYSKFSSKSD  203 (283)
T ss_dssp             HHSTTSTTSCGGGCCHHHHHHCCCSHHHH
T ss_pred             cccccCCccCcccCCHHHhccCCCCchhh
Confidence            2222233467777    444555665554

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A

Probab=99.90  E-value=1.9e-24  Score=186.61  Aligned_cols=158  Identities=16%  Similarity=0.329  Sum_probs=124.2

Q ss_pred             HHhhcCCCcccceeeeeCceEEEEEEEC--------CCcEEEEEEecccC-hhHHHHHHHHHHHHHhC-CCCcccceeeE
Q 047066           99 LKIATNNYAYDRMIGRGGYGTVFLGSLS--------DNKAIAIKKSRIVY-QSQIEQCINKVVVLSQI-NHRNVVGLLGC  168 (256)
Q Consensus        99 ~~~~~~~~~~~~~lg~G~~g~V~~~~~~--------~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l-~h~niv~l~~~  168 (256)
                      +....++|++.+.||+|+||.||+|...        ++..||+|.++... ....+.+.+|+.+++.+ +||||++++++
T Consensus        76 ~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~  155 (370)
T 2psq_A           76 WEFPRDKLTLGKPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGA  155 (370)
T ss_dssp             TBCCGGGEEEEEEESCCSSSEEEEEEEETCSTTCTTCEEEEEEEECCTTCBHHHHHHHHHHHHHHHHSCCCTTBCCEEEE
T ss_pred             ccccHHHCEeeeEEeeCCCeeEEEEEEecccCcCcCcceeEEEEEecCCcCHHHHHHHHHHHHHHHHhcCCCCEeeEEEE
Confidence            4556678999999999999999999852        34579999986543 44567899999999999 89999999999


Q ss_pred             EEECCEEEEEEecCCCCCC--------------------------CHHHHHHHHHHHH-------------hccCCCcEE
Q 047066          169 CLETEVPLLVNEFVKLPTI--------------------------SWEVRIRIAAETA-------------EDIKSINIL  209 (256)
Q Consensus       169 ~~~~~~~~lv~e~~~~~~l--------------------------~~~~~~~~~~~i~-------------rdlk~~NiL  209 (256)
                      +...+..++||||+++++|                          ++...+.++.|++             |||||+|||
T Consensus       156 ~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlkp~NIl  235 (370)
T 2psq_A          156 CTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQKCIHRDLAARNVL  235 (370)
T ss_dssp             ECSSSSCEEEEECCTTCBHHHHHHHTCCC-----------CCCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEE
T ss_pred             EccCCCEEEEEEcCCCCCHHHHHHhhCCccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhCCeeccccchhhEE
Confidence            9999999999999988665                          3444455666655             699999999


Q ss_pred             EcCCCcEEEEecCCceecCCCCcee-eeeeeecccc----cccccCCCCCCC
Q 047066          210 LDDNYTTKVCDFGASKLVPIDETQL-STMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       210 i~~~~~~ki~DFGla~~~~~~~~~~-~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      ++.++.+||+|||+|+.+....... .....||+.|    .+.+..++.++|
T Consensus       236 l~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~D  287 (370)
T 2psq_A          236 VTENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSD  287 (370)
T ss_dssp             ECTTCCEEECCCSSCEETTCCCTTCTTTTTTSCGGGCCHHHHHTCCCCHHHH
T ss_pred             ECCCCCEEEccccCCcccCcccceecccCCCcccceECHhHhcCCCCCcHHH
Confidence            9999999999999999775433221 2223477888    455666776665

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7

Probab=99.90  E-value=1.7e-23  Score=177.29  Aligned_cols=151  Identities=17%  Similarity=0.235  Sum_probs=123.0

Q ss_pred             cCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEec
Q 047066          103 TNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEF  181 (256)
Q Consensus       103 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~  181 (256)
                      .++|++.+.||+|+||.||+|... ++..+|+|.+.... .....+.+|+.+++.++||||+++++++.+.+..+++|||
T Consensus         4 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~-~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~e~   82 (321)
T 1tki_A            4 YEKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVKG-TDQVLVKKEISILNIARHRNILHLHESFESMEELVMIFEF   82 (321)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCT-HHHHHHHHHHHHHHHSCCTTBCCEEEEEEETTEEEEEECC
T ss_pred             hhceEeeeEEecCCCeEEEEEEECCCCcEEEEEEEecCc-ccHHHHHHHHHHHHhCCCCCCCeEeEEEecCCEEEEEEEe
Confidence            468999999999999999999976 68899999886543 3446788999999999999999999999999999999999


Q ss_pred             CCCCC-----------CCHHHHHHHHHHHH-------------hccCCCcEEEcC--CCcEEEEecCCceecCCCCceee
Q 047066          182 VKLPT-----------ISWEVRIRIAAETA-------------EDIKSINILLDD--NYTTKVCDFGASKLVPIDETQLS  235 (256)
Q Consensus       182 ~~~~~-----------l~~~~~~~~~~~i~-------------rdlk~~NiLi~~--~~~~ki~DFGla~~~~~~~~~~~  235 (256)
                      +++++           +++.....++.|++             +||||+|||++.  ++.+||+|||+++.+.....  .
T Consensus        83 ~~g~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH~~givH~Dlkp~NIl~~~~~~~~~kl~Dfg~a~~~~~~~~--~  160 (321)
T 1tki_A           83 ISGLDIFERINTSAFELNEREIVSYVHQVCEALQFLHSHNIGHFDIRPENIIYQTRRSSTIKIIEFGQARQLKPGDN--F  160 (321)
T ss_dssp             CCCCBHHHHHTSSSCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESSSSCCCEEECCCTTCEECCTTCE--E
T ss_pred             CCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCCCcCCCCHHHEEEccCCCCCEEEEECCCCeECCCCCc--c
Confidence            98754           46666667776665             699999999987  78999999999998754432  3


Q ss_pred             eeeeecccc----cccccCCCCCCC
Q 047066          236 TMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       236 ~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      ....||+.|    .+.+..++.++|
T Consensus       161 ~~~~gt~~y~aPE~~~~~~~~~~~D  185 (321)
T 1tki_A          161 RLLFTAPEYYAPEVHQHDVVSTATD  185 (321)
T ss_dssp             EEEESCGGGSCHHHHTTCEECHHHH
T ss_pred             ccccCChhhcCcHHhcCCCCCchhh
Confidence            445799999    444444565554

>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A*

Probab=99.90  E-value=1.5e-23  Score=179.31  Aligned_cols=153  Identities=26%  Similarity=0.329  Sum_probs=122.5

Q ss_pred             cCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEeccc---ChhHHHHHHHHHHHHHhC-CCCcccceeeEEEECCEEEE
Q 047066          103 TNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIV---YQSQIEQCINKVVVLSQI-NHRNVVGLLGCCLETEVPLL  177 (256)
Q Consensus       103 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~l  177 (256)
                      .++|++.+.||+|+||.||+|+.+ +++.||+|.+...   .....+.+.+|..++..+ +||||+++++++.+.+..++
T Consensus         8 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~~~~l   87 (345)
T 3a8x_A            8 LQDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFF   87 (345)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGSCSHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEE
T ss_pred             hhheEEEEEEEecCCeEEEEEEECCCCCEEEEEEEEhHHhcchHHHHHHHHHHHHHHhcCCCCccCeEEEEEEeCCEEEE
Confidence            357899999999999999999976 5889999988643   344556788999999988 89999999999999999999


Q ss_pred             EEecCCCCCC----------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCcee
Q 047066          178 VNEFVKLPTI----------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQL  234 (256)
Q Consensus       178 v~e~~~~~~l----------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~  234 (256)
                      ||||+++++|          ++.....++.+++             |||||+|||++.++.+||+|||+|+....... .
T Consensus        88 v~e~~~gg~L~~~l~~~~~l~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~g~~kL~DFG~a~~~~~~~~-~  166 (345)
T 3a8x_A           88 VIEYVNGGDLMFHMQRQRKLPEEHARFYSAEISLALNYLHERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPGD-T  166 (345)
T ss_dssp             EECCCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTSCEEECCGGGCBCSCCTTC-C
T ss_pred             EEeCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCceecCCCHHHEEECCCCCEEEEeccccccccCCCC-c
Confidence            9999998665          4444555555554             69999999999999999999999986433222 2


Q ss_pred             eeeeeecccc----cccccCCCCCCC
Q 047066          235 STMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       235 ~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      ....+||+.|    .+.+..++.++|
T Consensus       167 ~~~~~gt~~y~aPE~~~~~~~~~~~D  192 (345)
T 3a8x_A          167 TSTFCGTPNYIAPEILRGEDYGFSVD  192 (345)
T ss_dssp             BCCCCSCGGGCCHHHHTTCCBCTHHH
T ss_pred             ccccCCCccccCccccCCCCCChHHh
Confidence            3445799999    455566676665

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A*

Probab=99.90  E-value=2.4e-24  Score=184.54  Aligned_cols=166  Identities=23%  Similarity=0.385  Sum_probs=130.3

Q ss_pred             ccccChHHHHhhcCCCcccceeeeeCceEEEEEEE------CCCcEEEEEEecccC-hhHHHHHHHHHHHHHhC-CCCcc
Q 047066           91 AKIFTAGELKIATNNYAYDRMIGRGGYGTVFLGSL------SDNKAIAIKKSRIVY-QSQIEQCINKVVVLSQI-NHRNV  162 (256)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~------~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l-~h~ni  162 (256)
                      ...+....|+++.++|++.+.||+|+||.||+|.+      .+++.||+|.++... ....+.+.+|+.++..+ +||||
T Consensus         9 ~~~~~~~~~~~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpni   88 (359)
T 3vhe_A            9 RLPYDASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNV   88 (359)
T ss_dssp             GSCCCHHHHBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTB
T ss_pred             hCCCCcccccccccceeeceeecCCCCceEEEEEeccccccccceEEEEEEecCcCCHHHHHHHHHHHHHHHhhcCCcce
Confidence            34566788999999999999999999999999974      245789999987543 44557899999999999 89999


Q ss_pred             cceeeEEEECC-EEEEEEecCCCCC-------------------------------------------------------
Q 047066          163 VGLLGCCLETE-VPLLVNEFVKLPT-------------------------------------------------------  186 (256)
Q Consensus       163 v~l~~~~~~~~-~~~lv~e~~~~~~-------------------------------------------------------  186 (256)
                      +++++++...+ ..+++|||+++|+                                                       
T Consensus        89 v~~~~~~~~~~~~~~iv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (359)
T 3vhe_A           89 VNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKTKGARFRQGKDYVGAIPVDLKRRLDSITSSQSSASSGFV  168 (359)
T ss_dssp             CCEEEEECSTTSCCEEEEECCTTEEHHHHHHTTTTSBCSCC---------------------------------------
T ss_pred             eeeeeeeecCCCceEEEEEecCCCcHHHHHHhccccccccccccchhhcccccccccchhhhccccccCccccccccccc
Confidence            99999998754 4899999998754                                                       


Q ss_pred             ---------------------CCHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCc
Q 047066          187 ---------------------ISWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDET  232 (256)
Q Consensus       187 ---------------------l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~  232 (256)
                                           +++.....++.+++             +||||+|||++.++.+||+|||+++.+..+..
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ql~~aL~~LH~~~ivH~Dikp~NIll~~~~~~kl~Dfg~a~~~~~~~~  248 (359)
T 3vhe_A          169 EEKSLSDVEEEEAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPD  248 (359)
T ss_dssp             ---------------CTTTTCBCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGGCEEECCCGGGSCTTSCTT
T ss_pred             cccccchhhhcccccchhccccCHHHHHHHHHHHHHHHHHHHHCCcccCCCChhhEEEcCCCcEEEEeccceeeeccccc
Confidence                                 44555555666655             69999999999999999999999987654332


Q ss_pred             -eeeeeeeecccc----cccccCCCCCCC
Q 047066          233 -QLSTMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       233 -~~~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                       .......||+.|    .+.+..++.++|
T Consensus       249 ~~~~~~~~~t~~y~aPE~~~~~~~~~~~D  277 (359)
T 3vhe_A          249 YVRKGDARLPLKWMAPETIFDRVYTIQSD  277 (359)
T ss_dssp             CEEC--CEECGGGCCHHHHHHCCCCHHHH
T ss_pred             chhccccCCCceeEChhhhcCCCCCchhh
Confidence             233455689999    455666776665

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens}

Probab=99.90  E-value=1e-23  Score=186.02  Aligned_cols=153  Identities=18%  Similarity=0.174  Sum_probs=122.3

Q ss_pred             cCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC--hhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEE
Q 047066          103 TNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY--QSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVN  179 (256)
Q Consensus       103 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~  179 (256)
                      .++|++.+.||+|+||.||+|... +++.+|+|.+....  ....+.+.+|+.+++.++||||+++++++.+.+..++||
T Consensus        10 ~~~Y~i~~~LG~G~fg~V~~~~~~~~~~~~a~K~i~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~lv~   89 (444)
T 3soa_A           10 TEEYQLFEELGKGAFSVVRRCVKVLAGQEYAAMIINTKKLSARDHQKLEREARICRLLKHPNIVRLHDSISEEGHHYLIF   89 (444)
T ss_dssp             HHHEEEEEEEEEC--CEEEEEEETTTTEEEEEEEEESCSCHHHHHHHHHHHHHHHHHCCBTTBCCEEEEEECSSEEEEEE
T ss_pred             cCCeEEEEEeccCCCeEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCcCCCeEEEEEEECCEEEEEE
Confidence            467999999999999999999875 68999999886543  344567899999999999999999999999999999999


Q ss_pred             ecCCCCCC----------CHHHHHHHHHHHH-------------hccCCCcEEEc---CCCcEEEEecCCceecCCCCce
Q 047066          180 EFVKLPTI----------SWEVRIRIAAETA-------------EDIKSINILLD---DNYTTKVCDFGASKLVPIDETQ  233 (256)
Q Consensus       180 e~~~~~~l----------~~~~~~~~~~~i~-------------rdlk~~NiLi~---~~~~~ki~DFGla~~~~~~~~~  233 (256)
                      ||+.+++|          ++.....++.|++             |||||+|||++   +++.+||+|||+|+....+...
T Consensus        90 E~~~gg~L~~~i~~~~~~~e~~~~~i~~qil~aL~~lH~~givHrDlKp~NIll~~~~~~~~vkL~DFG~a~~~~~~~~~  169 (444)
T 3soa_A           90 DLVTGGELFEDIVAREYYSEADASHCIQQILEAVLHCHQMGVVHRNLKPENLLLASKLKGAAVKLADFGLAIEVEGEQQA  169 (444)
T ss_dssp             CCCBCCBHHHHHHHCSCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCSSTTEEESBSSTTCCEEECCCSSCBCCCTTCCB
T ss_pred             EeCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCCHHHEEEeccCCCCcEEEccCceeEEecCCCce
Confidence            99998765          5555566666655             69999999998   4678999999999877544332


Q ss_pred             eeeeeeecccc----cccccCCCCCCC
Q 047066          234 LSTMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       234 ~~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                       .....||+.|    .+.+..++.++|
T Consensus       170 -~~~~~gt~~Y~APE~l~~~~~~~~~D  195 (444)
T 3soa_A          170 -WFGFAGTPGYLSPEVLRKDPYGKPVD  195 (444)
T ss_dssp             -CCCSCSCGGGCCHHHHTTCCBCTHHH
T ss_pred             -eecccCCcccCCHHHhcCCCCCCccc
Confidence             2345699999    555667777766

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A

Probab=99.90  E-value=1.2e-23  Score=180.19  Aligned_cols=153  Identities=17%  Similarity=0.183  Sum_probs=121.4

Q ss_pred             cCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC-----hhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEE
Q 047066          103 TNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY-----QSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPL  176 (256)
Q Consensus       103 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~-----~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~  176 (256)
                      .+.|++.+.||+|+||.||+|..+ +++.||+|.+....     ....+.+.+|+.+++.++||||+++++++...+..+
T Consensus        23 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~  102 (351)
T 3c0i_A           23 EDVYELCEVIGKGPFSVVRRCINRETGQQFAVKIVDVAKFTSSPGLSTEDLKREASICHMLKHPHIVELLETYSSDGMLY  102 (351)
T ss_dssp             HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHTSSSCCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEE
T ss_pred             ccceEEeeEEeeCCCEEEEEEEECCCCCEEEEEEEEhhhccccccchHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEE
Confidence            357999999999999999999975 68999999875321     123577899999999999999999999999999999


Q ss_pred             EEEecCCCCCC--------------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCc---EEEEecCCcee
Q 047066          177 LVNEFVKLPTI--------------SWEVRIRIAAETA-------------EDIKSINILLDDNYT---TKVCDFGASKL  226 (256)
Q Consensus       177 lv~e~~~~~~l--------------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~---~ki~DFGla~~  226 (256)
                      +||||+++++|              ++.....++.|++             |||||+|||++.++.   +||+|||+++.
T Consensus       103 lv~e~~~g~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~~ivHrDlkp~NIl~~~~~~~~~vkl~Dfg~a~~  182 (351)
T 3c0i_A          103 MVFEFMDGADLCFEIVKRADAGFVYSEAVASHYMRQILEALRYCHDNNIIHRDVKPHCVLLASKENSAPVKLGGFGVAIQ  182 (351)
T ss_dssp             EEEECCSSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECSSSTTCCEEECCCTTCEE
T ss_pred             EEEeCCCCCCHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHCCceeccCChHHeEEecCCCCCcEEEecCcceeE
Confidence            99999998765              4444455555554             699999999986654   99999999998


Q ss_pred             cCCCCceeeeeeeecccc----cccccCCCCCCC
Q 047066          227 VPIDETQLSTMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       227 ~~~~~~~~~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      ....... ....+||+.|    .+.+..++.++|
T Consensus       183 ~~~~~~~-~~~~~gt~~y~aPE~~~~~~~~~~~D  215 (351)
T 3c0i_A          183 LGESGLV-AGGRVGTPHFMAPEVVKREPYGKPVD  215 (351)
T ss_dssp             CCTTSCB-CCCCCSCGGGCCHHHHTTCCBCTHHH
T ss_pred             ecCCCee-ecCCcCCcCccCHHHHcCCCCCchHh
Confidence            7654322 3345699999    555566777665

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*

Probab=99.90  E-value=2.1e-24  Score=190.65  Aligned_cols=156  Identities=21%  Similarity=0.266  Sum_probs=114.1

Q ss_pred             HhhcCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEeccc---ChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEE
Q 047066          100 KIATNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIV---YQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVP  175 (256)
Q Consensus       100 ~~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~  175 (256)
                      .+..++|++.+.||+|+||.||+|... +++.||+|.+...   .......+.+|+.+++.++||||+++++++...+..
T Consensus       144 ~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~  223 (446)
T 4ejn_A          144 RVTMNEFEYLKLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLTALKYSFQTHDRL  223 (446)
T ss_dssp             CCCGGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHC-------------CCCCCSCTTSCCEEEEEEETTEE
T ss_pred             CCChHHcEEeEEEeeCcCEEEEEEEEcCCCCEEEEEEEEhhhhhhhHHHHHHHHHHHHHHhCCCCeEeeEEEEEeeCCEE
Confidence            344567999999999999999999975 6889999988643   234456788999999999999999999999999999


Q ss_pred             EEEEecCCCCCC----------CHHHHHHHHHHH--------------HhccCCCcEEEcCCCcEEEEecCCceecCCCC
Q 047066          176 LLVNEFVKLPTI----------SWEVRIRIAAET--------------AEDIKSINILLDDNYTTKVCDFGASKLVPIDE  231 (256)
Q Consensus       176 ~lv~e~~~~~~l----------~~~~~~~~~~~i--------------~rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~  231 (256)
                      ++||||+++++|          ++.....++.|+              ||||||+|||++.++.+||+|||+|+......
T Consensus       224 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~~giiHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~  303 (446)
T 4ejn_A          224 CFVMEYANGGELFFHLSRERVFSEDRARFYGAEIVSALDYLHSEKNVVYRDLKLENLMLDKDGHIKITDFGLCKEGIKDG  303 (446)
T ss_dssp             EEEECCCSSCBHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHTCCCCCCCCGGGEEECSSSCEEECCCCCCCTTCC--
T ss_pred             EEEEeeCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhcCCEEECCCCHHHEEECCCCCEEEccCCCceeccCCC
Confidence            999999999765          444444444443              36999999999999999999999998654332


Q ss_pred             ceeeeeeeecccc----cccccCCCCCCC
Q 047066          232 TQLSTMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       232 ~~~~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      .. ....+||+.|    .+.++.++.++|
T Consensus       304 ~~-~~~~~gt~~y~aPE~~~~~~~~~~~D  331 (446)
T 4ejn_A          304 AT-MKTFCGTPEYLAPEVLEDNDYGRAVD  331 (446)
T ss_dssp             ----CCSSSCGGGCCHHHHHTSCCCTHHH
T ss_pred             cc-cccccCCccccCHhhcCCCCCCCccc
Confidence            22 3345799999    556777787766

>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A*

Probab=99.90  E-value=1.1e-23  Score=178.88  Aligned_cols=154  Identities=23%  Similarity=0.311  Sum_probs=112.3

Q ss_pred             hcCCCcccceeeeeCceEEEEEEE----CCCcEEEEEEecccC----hhHHHHHHHHHHHHHhCCCCcccceeeEEEECC
Q 047066          102 ATNNYAYDRMIGRGGYGTVFLGSL----SDNKAIAIKKSRIVY----QSQIEQCINKVVVLSQINHRNVVGLLGCCLETE  173 (256)
Q Consensus       102 ~~~~~~~~~~lg~G~~g~V~~~~~----~~~~~vavK~~~~~~----~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~  173 (256)
                      ..++|++.+.||+|+||.||++..    .+++.+|+|.++...    ......+.+|+.+++.++||||+++++++...+
T Consensus        15 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~   94 (327)
T 3a62_A           15 RPECFELLRVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAERNILEEVKHPFIVDLIYAFQTGG   94 (327)
T ss_dssp             CGGGEEEEEEEEEETTEEEEEEEECSSTTTTCEEEEEEECCC--------------HHHHHHHCCCTTBCCEEEEEECSS
T ss_pred             CHHHeEEEEEEEeCCCEEEEEEEEeccCCCCcEEEEEEEEHHHhhhhhhHHHHHHHHHHHHHhCCCCCccceeEEEEcCC
Confidence            446899999999999999999986    468899999886532    233456789999999999999999999999999


Q ss_pred             EEEEEEecCCCCCC----------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCC
Q 047066          174 VPLLVNEFVKLPTI----------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPID  230 (256)
Q Consensus       174 ~~~lv~e~~~~~~l----------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~  230 (256)
                      ..++||||+++++|          +......++.+++             |||||+|||++.++.+||+|||+++.....
T Consensus        95 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~al~~lH~~~ivH~Dlkp~Nill~~~~~~kl~Dfg~~~~~~~~  174 (327)
T 3a62_A           95 KLYLILEYLSGGELFMQLEREGIFMEDTACFYLAEISMALGHLHQKGIIYRDLKPENIMLNHQGHVKLTDFGLCKESIHD  174 (327)
T ss_dssp             CEEEEEECCTTEEHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCTTTEEECTTSCEEECCCSCC------
T ss_pred             EEEEEEeCCCCCcHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCEEcccCCHHHeEECCCCcEEEEeCCcccccccC
Confidence            99999999998654          4444555555554             699999999999999999999999865433


Q ss_pred             Cceeeeeeeecccc----cccccCCCCCCC
Q 047066          231 ETQLSTMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       231 ~~~~~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      .. .....+||+.|    .+.+..++.++|
T Consensus       175 ~~-~~~~~~gt~~y~aPE~~~~~~~~~~~D  203 (327)
T 3a62_A          175 GT-VTHTFCGTIEYMAPEILMRSGHNRAVD  203 (327)
T ss_dssp             -----CTTSSCCTTSCHHHHTTSCCCTHHH
T ss_pred             Cc-cccccCCCcCccCHhhCcCCCCCCccc
Confidence            22 12334699999    445566676665

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*

Probab=99.90  E-value=2.7e-23  Score=178.72  Aligned_cols=152  Identities=20%  Similarity=0.184  Sum_probs=123.5

Q ss_pred             cCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccCh------hHHHHHHHHHHHHHhCCCCcccceeeEEEECCEE
Q 047066          103 TNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVYQ------SQIEQCINKVVVLSQINHRNVVGLLGCCLETEVP  175 (256)
Q Consensus       103 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~------~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~  175 (256)
                      .+.|++.+.||+|+||.||+|..+ +++.+|+|.+.....      ...+.+.+|+.+++.++||||+++++++.+.+..
T Consensus        11 ~~~y~~~~~LG~G~fg~V~~~~~~~~~~~~avK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~   90 (361)
T 2yab_A           11 EDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVCREEIEREVSILRQVLHPNIITLHDVYENRTDV   90 (361)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEE
T ss_pred             hhceEEeeEEeeCcCEEEEEEEECCCCCEEEEEEEEccccccccchhHHHHHHHHHHHHHhCCCcCCCcEEEEEEeCCEE
Confidence            367999999999999999999976 688999998865331      1346789999999999999999999999999999


Q ss_pred             EEEEecCCCCC----------CCHHHHHHHHHHHH-------------hccCCCcEEEcCCC----cEEEEecCCceecC
Q 047066          176 LLVNEFVKLPT----------ISWEVRIRIAAETA-------------EDIKSINILLDDNY----TTKVCDFGASKLVP  228 (256)
Q Consensus       176 ~lv~e~~~~~~----------l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~----~~ki~DFGla~~~~  228 (256)
                      ++||||+++++          +++.....++.|++             +||||+|||++.++    .+||+|||+++.+.
T Consensus        91 ~lv~e~~~gg~L~~~l~~~~~l~~~~~~~i~~qi~~aL~~LH~~givHrDlkp~NIll~~~~~~~~~vkl~DFG~a~~~~  170 (361)
T 2yab_A           91 VLILELVSGGELFDFLAQKESLSEEEATSFIKQILDGVNYLHTKKIAHFDLKPENIMLLDKNIPIPHIKLIDFGLAHEIE  170 (361)
T ss_dssp             EEEEECCCSCBHHHHHTTCSCCBHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEESCTTSSSCCEEECCCSSCEECC
T ss_pred             EEEEEcCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEEeCCCCCccCEEEEecCCceEcC
Confidence            99999998765          45666666666655             69999999998776    79999999999875


Q ss_pred             CCCceeeeeeeecccc----cccccCCCCCCC
Q 047066          229 IDETQLSTMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       229 ~~~~~~~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      ....  ....+||+.|    .+.+..++.++|
T Consensus       171 ~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~D  200 (361)
T 2yab_A          171 DGVE--FKNIFGTPEFVAPEIVNYEPLGLEAD  200 (361)
T ss_dssp             TTCC--CCCCCSCGGGCCHHHHTTCCCCTHHH
T ss_pred             CCCc--cccCCCCccEECchHHcCCCCCcccc
Confidence            4322  2345699999    555566777665

>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A

Probab=99.90  E-value=7.9e-24  Score=176.29  Aligned_cols=152  Identities=22%  Similarity=0.292  Sum_probs=119.6

Q ss_pred             CCCcccceeeeeCceEEEEEEECCCcEEEEEEecccC--hhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEec
Q 047066          104 NNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVY--QSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEF  181 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~  181 (256)
                      ++|++.+.||+|+||.||+|...+++.+|+|++....  ....+.+.+|+.+++.++||||+++++++...+..+++|||
T Consensus         2 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~   81 (288)
T 1ob3_A            2 EKYHGLEKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVIHTKKRLVLVFEH   81 (288)
T ss_dssp             CSEEEEEEEEEETTEEEEEEEETTSCEEEEEEECCSSGGGCCCHHHHHHHHGGGGCCCTTBCCEEEEEECSSCEEEEEEC
T ss_pred             ccchhhhhcccCCCEEEEEEEcCCCCEEEEEEEeccccccccchhHHHHHHHHHhcCCCCEeeeeeEEccCCeEEEEEEe
Confidence            5789999999999999999999889999999886543  22346788999999999999999999999999999999999


Q ss_pred             CCC----------CCCCHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceeeeee
Q 047066          182 VKL----------PTISWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMV  238 (256)
Q Consensus       182 ~~~----------~~l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~~~  238 (256)
                      +++          +.++......++.|++             +||||+|||++.++.+||+|||+++....+... ....
T Consensus        82 ~~~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~-~~~~  160 (288)
T 1ob3_A           82 LDQDLKKLLDVCEGGLESVTAKSFLLQLLNGIAYCHDRRVLHRDLKPQNLLINREGELKIADFGLARAFGIPVRK-YTHE  160 (288)
T ss_dssp             CSEEHHHHHHTSTTCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTSCEEECCTTHHHHHCC---------
T ss_pred             cCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEEcCCCCEEEeECccccccCccccc-cccc
Confidence            865          4567777777777765             699999999999999999999999876533222 2334


Q ss_pred             eecccc----ccc-ccCCCCCCC
Q 047066          239 QGTLGY----YLH-TSQGTLNKE  256 (256)
Q Consensus       239 ~Gt~~y----~~~-~~~~t~ksD  256 (256)
                      .||+.|    .+. ...++.++|
T Consensus       161 ~~t~~y~aPE~~~~~~~~~~~~D  183 (288)
T 1ob3_A          161 IVTLWYRAPDVLMGSKKYSTTID  183 (288)
T ss_dssp             -CCCTTCCHHHHTTCCSCCTHHH
T ss_pred             cccccccCchheeCCCCCCcHHH
Confidence            689999    232 344677665

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A

Probab=99.90  E-value=1.3e-24  Score=194.49  Aligned_cols=160  Identities=22%  Similarity=0.384  Sum_probs=128.7

Q ss_pred             hHHHHhhcCCCcccceeeeeCceEEEEEEECC-CcEEEEEEecccChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCE
Q 047066           96 AGELKIATNNYAYDRMIGRGGYGTVFLGSLSD-NKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEV  174 (256)
Q Consensus        96 ~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~-~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~  174 (256)
                      ...|++..++|++.+.||+|+||.||+|.++. +..||+|.++.... ..+.+.+|+.++++++||||+++++++...+.
T Consensus       212 ~~~~~~~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~  290 (495)
T 1opk_A          212 YDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTM-EVEEFLKEAAVMKEIKHPNLVQLLGVCTREPP  290 (495)
T ss_dssp             SSCCBCCGGGEEEEEESGGGTTSSEEEEEEGGGTEEEEEEECCSSSS-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSS
T ss_pred             ccccccCHHHceeeeEecCCCCeEEEEEEEcCCCeEEEEEEecCccc-chHHHHHHHHHHHhcCCCCEeeEEEEEecCCc
Confidence            34577778899999999999999999999864 88999999875433 35789999999999999999999999999999


Q ss_pred             EEEEEecCCCCCC------------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCC
Q 047066          175 PLLVNEFVKLPTI------------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPI  229 (256)
Q Consensus       175 ~~lv~e~~~~~~l------------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~  229 (256)
                      .++||||+++++|            ++...+.++.|++             |||||+|||++.++.+||+|||+++....
T Consensus       291 ~~lv~E~~~~g~L~~~l~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~  370 (495)
T 1opk_A          291 FYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKNFIHRNLAARNCLVGENHLVKVADFGLSRLMTG  370 (495)
T ss_dssp             CEEEEECCTTCBHHHHHHHSCTTTSCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECGGGCEEECCTTCEECCTT
T ss_pred             EEEEEEccCCCCHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCChhhEEECCCCcEEEeecccceeccC
Confidence            9999999987654            4555566666665             69999999999999999999999998755


Q ss_pred             CCceeeeeeeecccc----cccccCCCCCCC
Q 047066          230 DETQLSTMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       230 ~~~~~~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      +.........+|+.|    .+.++.++.++|
T Consensus       371 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sD  401 (495)
T 1opk_A          371 DTYTAHAGAKFPIKWTAPESLAYNKFSIKSD  401 (495)
T ss_dssp             CCEECCTTCCCCGGGCCHHHHHHCEECHHHH
T ss_pred             CceeecCCCcCCcceeCHhHHhcCCCCcHHh
Confidence            433333334467778    445556666655

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7

Probab=99.90  E-value=2.4e-24  Score=194.46  Aligned_cols=161  Identities=21%  Similarity=0.365  Sum_probs=127.7

Q ss_pred             cChHHHHhhcCCCcccceeeeeCceEEEEEEECCCcEEEEEEecccChhHHHHHHHHHHHHHhCCCCcccceeeEEEECC
Q 047066           94 FTAGELKIATNNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLETE  173 (256)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~  173 (256)
                      +..+.|++..++|++.+.||+|+||.||+|.++++..||||.++.... ..+.+.+|+.+|+.++||||+++++++.. +
T Consensus       257 ~~~~~~~i~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~hpniv~~~~~~~~-~  334 (535)
T 2h8h_A          257 LAKDAWEIPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTM-SPEAFLQEAQVMKKLRHEKLVQLYAVVSE-E  334 (535)
T ss_dssp             SSTTCSBCCGGGEEEEEEEEECSSEEEEEEEETTTEEEEEEEECTTSS-CHHHHHHHHHHHHHCCCTTBCCEEEEECS-S
T ss_pred             cCccceecchhhhhhheecccCCCeEEEEEEECCCceEEEEEeCCCCC-CHHHHHHHHHHHHhCCCCCEeeEEEEEee-c
Confidence            445678888899999999999999999999998888899999875442 34679999999999999999999999876 6


Q ss_pred             EEEEEEecCCCCCC------------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecC
Q 047066          174 VPLLVNEFVKLPTI------------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVP  228 (256)
Q Consensus       174 ~~~lv~e~~~~~~l------------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~  228 (256)
                      ..++||||+++++|            ++...+.++.|++             |||||+|||+++++.+||+|||+++.+.
T Consensus       335 ~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~qi~~~L~~LH~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~  414 (535)
T 2h8h_A          335 PIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIE  414 (535)
T ss_dssp             SCEEEECCCTTEEHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGGCEEECCTTSTTTCC
T ss_pred             cceEeeehhcCCcHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCCHhhEEEcCCCcEEEcccccceecC
Confidence            68999999988654            4555566666665             6999999999999999999999998764


Q ss_pred             CCCceeeeeeeecccc----cccccCCCCCCC
Q 047066          229 IDETQLSTMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       229 ~~~~~~~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      .+.........+|+.|    .+..+.++.++|
T Consensus       415 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sD  446 (535)
T 2h8h_A          415 DNEYTARQGAKFPIKWTAPEAALYGRFTIKSD  446 (535)
T ss_dssp             CHHHHTTCSTTSCGGGSCHHHHHHCCCCHHHH
T ss_pred             CCceecccCCcCcccccCHHHhccCCCCchhh
Confidence            3221112223466777    455666777665

>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...

Probab=99.90  E-value=2e-23  Score=178.84  Aligned_cols=149  Identities=23%  Similarity=0.224  Sum_probs=122.4

Q ss_pred             CCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC---hhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEE
Q 047066          104 NNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY---QSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVN  179 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~  179 (256)
                      ++|++.+.||+|+||.||++..+ +++.||+|.+....   ....+.+.+|+.+++.++||||+++++++.+.+..++||
T Consensus        41 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~  120 (350)
T 1rdq_E           41 DQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVM  120 (350)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             HHCEEEEEeecCcCcEEEEEEECCCCCEEEEEEEEhHHhccHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEcCCEEEEEE
Confidence            57999999999999999999976 68999999885432   234567899999999999999999999999999999999


Q ss_pred             ecCCCCCC----------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceeee
Q 047066          180 EFVKLPTI----------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLST  236 (256)
Q Consensus       180 e~~~~~~l----------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~  236 (256)
                      ||+++++|          +......++.+++             |||||+|||++.++.+||+|||+++.....    ..
T Consensus       121 e~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~g~~kL~DFg~a~~~~~~----~~  196 (350)
T 1rdq_E          121 EYVAGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGR----TW  196 (350)
T ss_dssp             ECCTTCBHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEECSSC----BC
T ss_pred             cCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCcccccCccceEEECCCCCEEEcccccceeccCC----cc
Confidence            99998665          4555555665554             699999999999999999999999986543    23


Q ss_pred             eeeecccc----cccccCCCCCCC
Q 047066          237 MVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       237 ~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      ..+||+.|    .+.+..++.++|
T Consensus       197 ~~~gt~~y~aPE~~~~~~~~~~~D  220 (350)
T 1rdq_E          197 TLCGTPEALAPEIILSKGYNKAVD  220 (350)
T ss_dssp             CCEECGGGCCHHHHTTCCBCTHHH
T ss_pred             cccCCccccCHHHhcCCCCCCcCC
Confidence            45799999    455666777665

>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}

Probab=99.90  E-value=8.3e-24  Score=187.34  Aligned_cols=153  Identities=24%  Similarity=0.315  Sum_probs=111.6

Q ss_pred             CCCcccceeeeeCceEEEEEEEC-CCcEEEEEEeccc--ChhHHHHHHHHHHHHHhCCCCcccceeeEEEEC-----CEE
Q 047066          104 NNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIV--YQSQIEQCINKVVVLSQINHRNVVGLLGCCLET-----EVP  175 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~-----~~~  175 (256)
                      ++|++.+.||+|+||.||+|..+ +++.||+|++...  .....+++.+|+.+|+.++||||+++++++...     +..
T Consensus        53 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~~~  132 (458)
T 3rp9_A           53 DRYEIRHLIGTGSYGHVCEAYDKLEKRVVAIKKILRVFEDLIDCKRILREIAILNRLNHDHVVKVLDIVIPKDVEKFDEL  132 (458)
T ss_dssp             TTEEECCC-------CEEEEEECC--CEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCCCE
T ss_pred             CCeEEeeEeeecCCeEEEEEEECCCCcEEEEEEechhhcCHHHHHHHHHHHHHHHhCCCCCCCceEEEEecCCcccCceE
Confidence            68999999999999999999975 6889999988653  344557899999999999999999999999543     568


Q ss_pred             EEEEecCCC---------CCCCHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCc-
Q 047066          176 LLVNEFVKL---------PTISWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDET-  232 (256)
Q Consensus       176 ~lv~e~~~~---------~~l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~-  232 (256)
                      ++||||+.+         +.+++.....++.|++             |||||+|||++.++.+||+|||+|+....+.. 
T Consensus       133 ~lv~e~~~~~L~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~~~~  212 (458)
T 3rp9_A          133 YVVLEIADSDFKKLFRTPVYLTELHIKTLLYNLLVGVKYVHSAGILHRDLKPANCLVNQDCSVKVCDFGLARTVDYPENG  212 (458)
T ss_dssp             EEEECCCSEEHHHHHHSSCCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTCCEEECCCTTCBCTTSCTTC
T ss_pred             EEEEeccccchhhhcccCCCCCHHHHHHHHHHHHHHHHHHHhCCcCCCCCChhhEEECCCCCEeecccccchhccCcccc
Confidence            999999865         4477777777777665             69999999999999999999999997653221 


Q ss_pred             -------------------------eeeeeeeecccc---c--ccccCCCCCCC
Q 047066          233 -------------------------QLSTMVQGTLGY---Y--LHTSQGTLNKE  256 (256)
Q Consensus       233 -------------------------~~~~~~~Gt~~y---~--~~~~~~t~ksD  256 (256)
                                               ...+..+||++|   +  .....++.++|
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~~D  266 (458)
T 3rp9_A          213 NSQLPISPREDDMNLVTFPHTKNLKRQLTGHVVTRWYRAPELILLQENYTEAID  266 (458)
T ss_dssp             CCCCC---------------------------CCCTTCCHHHHTTCCCCCTHHH
T ss_pred             ccccccCccccccccccccccccccccccCCcccccccChHHhhCCCCCCcHhH
Confidence                                     122345789999   3  34566887766

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7

Probab=99.90  E-value=3.3e-23  Score=179.80  Aligned_cols=151  Identities=19%  Similarity=0.261  Sum_probs=124.0

Q ss_pred             CCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEecC
Q 047066          104 NNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEFV  182 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~  182 (256)
                      +.|++.+.||+|+||.||+|..+ +++.+|+|.+..........+.+|+.+++.++||||+++++++...+..++||||+
T Consensus        51 ~~y~i~~~LG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~lv~E~~  130 (387)
T 1kob_A           51 DYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPKLINLHDAFEDKYEMVLILEFL  130 (387)
T ss_dssp             GTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCSTTBCCEEEEEECSSEEEEEEECC
T ss_pred             cceEEEEEEecCCCEEEEEEEECCCCCEEEEEEecccchhhHHHHHHHHHHHHhCCCcCCCeEEEEEEeCCEEEEEEEcC
Confidence            67999999999999999999975 68899999987666556678899999999999999999999999999999999999


Q ss_pred             CCCC-----------CCHHHHHHHHHHHH-------------hccCCCcEEEcC--CCcEEEEecCCceecCCCCceeee
Q 047066          183 KLPT-----------ISWEVRIRIAAETA-------------EDIKSINILLDD--NYTTKVCDFGASKLVPIDETQLST  236 (256)
Q Consensus       183 ~~~~-----------l~~~~~~~~~~~i~-------------rdlk~~NiLi~~--~~~~ki~DFGla~~~~~~~~~~~~  236 (256)
                      ++++           +++.....++.|++             |||||+|||++.  ++.+||+|||+|+.+..+..  ..
T Consensus       131 ~gg~L~~~l~~~~~~l~~~~~~~i~~qi~~aL~~LH~~givHrDlkp~NIll~~~~~~~vkL~DFG~a~~~~~~~~--~~  208 (387)
T 1kob_A          131 SGGELFDRIAAEDYKMSEAEVINYMRQACEGLKHMHEHSIVHLDIKPENIMCETKKASSVKIIDFGLATKLNPDEI--VK  208 (387)
T ss_dssp             CCCBHHHHTTCTTCCBCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESSTTCCCEEECCCTTCEECCTTSC--EE
T ss_pred             CCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhCCeeecccchHHeEEecCCCCceEEEecccceecCCCcc--ee
Confidence            8755           45666666776665             699999999974  56899999999998754432  33


Q ss_pred             eeeecccc----cccccCCCCCCC
Q 047066          237 MVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       237 ~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      ..+||+.|    .+.+..++.++|
T Consensus       209 ~~~gt~~y~aPE~~~~~~~~~~~D  232 (387)
T 1kob_A          209 VTTATAEFAAPEIVDREPVGFYTD  232 (387)
T ss_dssp             EECSSGGGCCHHHHTTCCBCHHHH
T ss_pred             eeccCCCccCchhccCCCCCCccc
Confidence            45699999    445555666554

>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A*

Probab=99.90  E-value=1.1e-23  Score=180.65  Aligned_cols=155  Identities=21%  Similarity=0.276  Sum_probs=122.7

Q ss_pred             hhcCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC---hhHHHHHHHHHHHHHhC-CCCcccceeeEEEECCEE
Q 047066          101 IATNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY---QSQIEQCINKVVVLSQI-NHRNVVGLLGCCLETEVP  175 (256)
Q Consensus       101 ~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~  175 (256)
                      ...++|++.+.||+|+||+||+|..+ +++.||+|.++...   ....+.+..|..++..+ +||||+++++++.+.+..
T Consensus        17 ~~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~~~   96 (353)
T 2i0e_A           17 MKLTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRL   96 (353)
T ss_dssp             --CTTEEEEEEEEEETTEEEEEEEETTEEEEEEEEEEEHHHHHHTTCHHHHHHHHHHHTCTTCCTTBCCEEEEEECSSEE
T ss_pred             CchHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhcchHHHHHHHHHHHHHhcCCCCEEeeEEEEEEcCCEE
Confidence            34578999999999999999999986 47899999886432   23456788999999988 899999999999999999


Q ss_pred             EEEEecCCCCCC----------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCc
Q 047066          176 LLVNEFVKLPTI----------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDET  232 (256)
Q Consensus       176 ~lv~e~~~~~~l----------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~  232 (256)
                      ++||||+++|+|          ++.....++.+++             |||||+|||++.++.+||+|||+|+.......
T Consensus        97 ~lv~E~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~givHrDlkp~NIll~~~g~vkL~DFG~a~~~~~~~~  176 (353)
T 2i0e_A           97 YFVMEYVNGGDLMYHIQQVGRFKEPHAVFYAAEIAIGLFFLQSKGIIYRDLKLDNVMLDSEGHIKIADFGMCKENIWDGV  176 (353)
T ss_dssp             EEEEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTSCEEECCCTTCBCCCCTTC
T ss_pred             EEEEeCCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCEEeccCCHHHEEEcCCCcEEEEeCCcccccccCCc
Confidence            999999998765          4444555555554             69999999999999999999999986433222


Q ss_pred             eeeeeeeecccc----cccccCCCCCCC
Q 047066          233 QLSTMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       233 ~~~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                       .....+||+.|    .+.+..++.++|
T Consensus       177 -~~~~~~gt~~y~aPE~~~~~~~~~~~D  203 (353)
T 2i0e_A          177 -TTKTFCGTPDYIAPEIIAYQPYGKSVD  203 (353)
T ss_dssp             -CBCCCCSCGGGCCHHHHTTCCBSTHHH
T ss_pred             -ccccccCCccccChhhhcCCCcCCccc
Confidence             23445799999    555666776665

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B

Probab=99.90  E-value=1.7e-23  Score=180.14  Aligned_cols=152  Identities=20%  Similarity=0.235  Sum_probs=123.3

Q ss_pred             cCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEeccc--ChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEE
Q 047066          103 TNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIV--YQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVN  179 (256)
Q Consensus       103 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~  179 (256)
                      .++|++.+.||+|+||.||+|..+ ++..||+|.+...  .....+.+.+|+.+++.++||||+++++++.+.+..++||
T Consensus        28 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~lv~  107 (362)
T 2bdw_A           28 SDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLVF  107 (362)
T ss_dssp             HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             ccCeEEeeEEecCCCeEEEEEEECCCCCEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEE
Confidence            467999999999999999999975 6889999988643  3445578899999999999999999999999999999999


Q ss_pred             ecCCCCCC----------CHHHHHHHHHHHH-------------hccCCCcEEEcCC---CcEEEEecCCceecCCCCce
Q 047066          180 EFVKLPTI----------SWEVRIRIAAETA-------------EDIKSINILLDDN---YTTKVCDFGASKLVPIDETQ  233 (256)
Q Consensus       180 e~~~~~~l----------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~---~~~ki~DFGla~~~~~~~~~  233 (256)
                      ||+.+++|          ++.....++.|++             +||||+|||++.+   +.+||+|||+++....... 
T Consensus       108 e~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~al~~lH~~~ivH~Dlkp~NIll~~~~~~~~~kl~DfG~a~~~~~~~~-  186 (362)
T 2bdw_A          108 DLVTGGELFEDIVAREFYSEADASHCIQQILESIAYCHSNGIVHRNLKPENLLLASKAKGAAVKLADFGLAIEVNDSEA-  186 (362)
T ss_dssp             CCCCSCBHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCSGGGEEESCSSTTCCEEECCCTTCBCCTTCCS-
T ss_pred             ecCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeEeccCchHHEEEecCCCCCCEEEeecCcceEecCCcc-
Confidence            99998665          5555666666655             6999999999865   4599999999987754322 


Q ss_pred             eeeeeeecccc----cccccCCCCCCC
Q 047066          234 LSTMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       234 ~~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                       .....||+.|    .+.+..++.++|
T Consensus       187 -~~~~~gt~~y~aPE~~~~~~~~~~~D  212 (362)
T 2bdw_A          187 -WHGFAGTPGYLSPEVLKKDPYSKPVD  212 (362)
T ss_dssp             -CCCSCSCTTTCCHHHHTTCCCCTHHH
T ss_pred             -cccCCCCccccCHHHHccCCCCchhh
Confidence             2345699999    555566777765

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ...

Probab=99.90  E-value=6.3e-24  Score=175.84  Aligned_cols=160  Identities=18%  Similarity=0.355  Sum_probs=125.3

Q ss_pred             ChHHHHhhcCCCcccceeeeeCceEEEEEEECCCcEEEEEEecccChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCE
Q 047066           95 TAGELKIATNNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEV  174 (256)
Q Consensus        95 ~~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~  174 (256)
                      ..++|++..++|++.+.||+|+||.||+|..+++..||+|.+..... ..+.+.+|+.+++.++||||+++++++.. +.
T Consensus         4 ~~~~~~v~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~h~~i~~~~~~~~~-~~   81 (279)
T 1qpc_A            4 WEDEWEVPRETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSM-SPDAFLAEANLMKQLQHQRLVRLYAVVTQ-EP   81 (279)
T ss_dssp             TTCTTBCCGGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTSS-CHHHHHHHHHHHHHCCCTTBCCEEEEECS-SS
T ss_pred             chhhcccCHHhhhheeeecCCCCeEEEEEEEcCCcEEEEEEecCCcc-cHHHHHHHHHHHHhCCCcCcceEEEEEcC-CC
Confidence            34567888899999999999999999999988888999998865432 34678999999999999999999998864 55


Q ss_pred             EEEEEecCCCCCC------------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCC
Q 047066          175 PLLVNEFVKLPTI------------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPI  229 (256)
Q Consensus       175 ~~lv~e~~~~~~l------------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~  229 (256)
                      .+++|||+++++|            ++.....++.+++             +||||+||++++++.+||+|||+++....
T Consensus        82 ~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~  161 (279)
T 1qpc_A           82 IYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNYIHRDLRAANILVSDTLSCKIADFGLARLIED  161 (279)
T ss_dssp             CEEEEECCTTCBHHHHTTSHHHHTCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTSCEEECCCTTCEECSS
T ss_pred             cEEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHhhEEEcCCCCEEECCCcccccccC
Confidence            8999999988654            5555566666655             59999999999999999999999998765


Q ss_pred             CCceeeeeeeecccc----cccccCCCCCCC
Q 047066          230 DETQLSTMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       230 ~~~~~~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      ..........||+.|    .+.++.++.++|
T Consensus       162 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~D  192 (279)
T 1qpc_A          162 NEYTAREGAKFPIKWTAPEAINYGTFTIKSD  192 (279)
T ss_dssp             SCEECCTTCCCCTTTSCHHHHHHCEECHHHH
T ss_pred             cccccccCCCCccCccChhhhccCCCCchhh
Confidence            433333334466777    333445555444

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}

Probab=99.90  E-value=1e-23  Score=182.66  Aligned_cols=161  Identities=18%  Similarity=0.322  Sum_probs=127.9

Q ss_pred             hHHHHhhcCCCcccceeeeeCceEEEEEEEC--------CCcEEEEEEecccC-hhHHHHHHHHHHHHHhC-CCCcccce
Q 047066           96 AGELKIATNNYAYDRMIGRGGYGTVFLGSLS--------DNKAIAIKKSRIVY-QSQIEQCINKVVVLSQI-NHRNVVGL  165 (256)
Q Consensus        96 ~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~--------~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l-~h~niv~l  165 (256)
                      ...+++..++|.+.+.||+|+||.||+|...        .+..||+|.+.... ....+.+.+|+.+++.+ +||||+++
T Consensus        61 ~~~~~i~~~~y~i~~~LG~G~~g~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~  140 (382)
T 3tt0_A           61 DPRWELPRDRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINL  140 (382)
T ss_dssp             CTTTBCCGGGEEEEEEEEECSSEEEEEEEEETSSTTCTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCE
T ss_pred             CcccccchhheEeeeEEecCCCeEEEEEEEccccccccccceEEEEEeeccccCHHHHHHHHHHHHHHHHhcCCchhhhh
Confidence            3456777889999999999999999999852        23579999986543 45567899999999999 99999999


Q ss_pred             eeEEEECCEEEEEEecCCCCC--------------------------CCHHHHHHHHHHHH-------------hccCCC
Q 047066          166 LGCCLETEVPLLVNEFVKLPT--------------------------ISWEVRIRIAAETA-------------EDIKSI  206 (256)
Q Consensus       166 ~~~~~~~~~~~lv~e~~~~~~--------------------------l~~~~~~~~~~~i~-------------rdlk~~  206 (256)
                      ++++...+..++||||+++++                          +++.....++.|++             +||||+
T Consensus       141 ~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~  220 (382)
T 3tt0_A          141 LGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLASKKCIHRDLAAR  220 (382)
T ss_dssp             EEEECSSSSCEEEEECCTTCBHHHHHHHTCCSSSSSCCCCCSSCCCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGG
T ss_pred             eeeeccCCceEEEEEecCCCcHHHHHHHhcccccccccccccccccccCHHHHHHHHHHHHHHHHHHHhCCEecCCCCcc
Confidence            999999999999999998754                          55666677777766             699999


Q ss_pred             cEEEcCCCcEEEEecCCceecCCCCc-eeeeeeeecccc----cccccCCCCCCC
Q 047066          207 NILLDDNYTTKVCDFGASKLVPIDET-QLSTMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       207 NiLi~~~~~~ki~DFGla~~~~~~~~-~~~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      |||+++++.+||+|||+|+....... .......||+.|    .+.+..++.++|
T Consensus       221 NIll~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~D  275 (382)
T 3tt0_A          221 NVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSD  275 (382)
T ss_dssp             GEEECTTCCEEECSCSCCCCSSCCCTTCCCTTCCCGGGGSCHHHHHSCCCCHHHH
T ss_pred             eEEEcCCCcEEEcccCcccccccccccccccCCCCCcceeCHHHhcCCCCCchhH
Confidence            99999999999999999987654322 122334578888    455666666655

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}

Probab=99.90  E-value=1.1e-23  Score=181.16  Aligned_cols=159  Identities=15%  Similarity=0.219  Sum_probs=126.0

Q ss_pred             ChHHHHhhcCCCcccceeeeeCceEEEEEE------ECCCcEEEEEEecccChhHHHHHHHHHHHHHhCC---CCcccce
Q 047066           95 TAGELKIATNNYAYDRMIGRGGYGTVFLGS------LSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQIN---HRNVVGL  165 (256)
Q Consensus        95 ~~~~~~~~~~~~~~~~~lg~G~~g~V~~~~------~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~---h~niv~l  165 (256)
                      +..++.+..++|.+.+.||+|+||.||+|.      ..+++.||+|.+....   ...+..|..++..++   |+|++++
T Consensus        56 ~~~~~~~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~---~~~~~~e~~~~~~l~~~~~~~iv~~  132 (365)
T 3e7e_A           56 PKTEFQLGSKLVYVHHLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQKPAN---PWEFYIGTQLMERLKPSMQHMFMKF  132 (365)
T ss_dssp             SSCEEECSSSEEEEEEEEEECSSEEEEEEEC-------CCCCEEEEEESSCC---HHHHHHHHHHHHHSCGGGGGGBCCE
T ss_pred             cceeEEECCEEEEEEEEeeccCCEEEEEEEecCCcccccCcEEEEEEeCCCC---hhHHHHHHHHHHHhhhhhhhhhhhh
Confidence            344566677889999999999999999994      3468899999987543   345778888888886   9999999


Q ss_pred             eeEEEECCEEEEEEecCCCCC---------------CCHHHHHHHHHHHH-------------hccCCCcEEEcC-----
Q 047066          166 LGCCLETEVPLLVNEFVKLPT---------------ISWEVRIRIAAETA-------------EDIKSINILLDD-----  212 (256)
Q Consensus       166 ~~~~~~~~~~~lv~e~~~~~~---------------l~~~~~~~~~~~i~-------------rdlk~~NiLi~~-----  212 (256)
                      ++++...+..++||||+++|+               +++.....++.|++             |||||+|||++.     
T Consensus       133 ~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~L~~lH~~~ivHrDiKp~NIll~~~~~~~  212 (365)
T 3e7e_A          133 YSAHLFQNGSVLVGELYSYGTLLNAINLYKNTPEKVMPQGLVISFAMRMLYMIEQVHDCEIIHGDIKPDNFILGNGFLEQ  212 (365)
T ss_dssp             EEEEECSSCEEEEECCCCSCBHHHHHHHHHTSTTCSCCHHHHHHHHHHHHHHHHHHHTTTEECCCCSGGGEEECGGGTCC
T ss_pred             heeeecCCCcEEEEeccCCCcHHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHhhCCeecCCCCHHHEEecccccCc
Confidence            999999999999999998765               45555666777766             699999999998     


Q ss_pred             ------CCcEEEEecCCceecCC-CCceeeeeeeecccc----cccccCCCCCCC
Q 047066          213 ------NYTTKVCDFGASKLVPI-DETQLSTMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       213 ------~~~~ki~DFGla~~~~~-~~~~~~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                            ++.+||+|||+|+.+.. ......+..+||+.|    .+.+..++.++|
T Consensus       213 ~~~~~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~D  267 (365)
T 3e7e_A          213 DDEDDLSAGLALIDLGQSIDMKLFPKGTIFTAKCETSGFQCVEMLSNKPWNYQID  267 (365)
T ss_dssp             ------CTTEEECCCTTCEEGGGSCTTEEECCSSCTTSCCCHHHHTTCCBSTHHH
T ss_pred             cccccccCCEEEeeCchhhhhhccCCCceeeeecCCCCCCChHHhcCCCCCcccc
Confidence                  89999999999987642 223334456799999    556667788776

>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens}

Probab=99.90  E-value=2.6e-23  Score=180.21  Aligned_cols=153  Identities=20%  Similarity=0.298  Sum_probs=123.0

Q ss_pred             hcCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC---hhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEE
Q 047066          102 ATNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY---QSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLL  177 (256)
Q Consensus       102 ~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~l  177 (256)
                      ..++|++.+.||+|+||.||++..+ +++.||+|.+....   ....+.+.+|+.+++.++||||+++++++.+.+..++
T Consensus        13 ~~~~y~i~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~~~~l   92 (384)
T 4fr4_A           13 NFDHFEILRAIGKGSFGKVCIVQKNDTKKMYAMKYMNKQKCVERNEVRNVFKELQIMQGLEHPFLVNLWYSFQDEEDMFM   92 (384)
T ss_dssp             CGGGEEEEEEEECCTTCCEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEE
T ss_pred             ChHHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEehhhcccHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEE
Confidence            3467999999999999999999976 58899999875432   3345778999999999999999999999999999999


Q ss_pred             EEecCCCCCC----------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCcee
Q 047066          178 VNEFVKLPTI----------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQL  234 (256)
Q Consensus       178 v~e~~~~~~l----------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~  234 (256)
                      ||||+.+++|          ++.....++.+++             |||||+|||++.++.+||+|||+|+.+....  .
T Consensus        93 v~e~~~gg~L~~~l~~~~~l~~~~~~~~~~qi~~aL~~LH~~givHrDlkp~NIll~~~g~vkL~DFG~a~~~~~~~--~  170 (384)
T 4fr4_A           93 VVDLLLGGDLRYHLQQNVHFKEETVKLFICELVMALDYLQNQRIIHRDMKPDNILLDEHGHVHITDFNIAAMLPRET--Q  170 (384)
T ss_dssp             EECCCTTEEHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEECCTTC--C
T ss_pred             EEecCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCceeccCcHHHeEECCCCCEEEeccceeeeccCCC--c
Confidence            9999988554          5555566666655             6999999999999999999999999875432  2


Q ss_pred             eeeeeecccc---c-cc---ccCCCCCCC
Q 047066          235 STMVQGTLGY---Y-LH---TSQGTLNKE  256 (256)
Q Consensus       235 ~~~~~Gt~~y---~-~~---~~~~t~ksD  256 (256)
                      ....+||+.|   + +.   +..++.++|
T Consensus       171 ~~~~~gt~~Y~aPE~~~~~~~~~~~~~~D  199 (384)
T 4fr4_A          171 ITTMAGTKPYMAPEMFSSRKGAGYSFAVD  199 (384)
T ss_dssp             BCCCCSCGGGCCGGGTCCCSSCCBCTTHH
T ss_pred             eeccCCCccccCCeeeccCCCCCCCccce
Confidence            3446799999   2 22   334677765

>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*

Probab=99.90  E-value=2.2e-23  Score=185.01  Aligned_cols=152  Identities=22%  Similarity=0.268  Sum_probs=118.6

Q ss_pred             cCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEeccc--ChhHHHHHHHHHHHHHhCCCCcccceeeEEEEC------C
Q 047066          103 TNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIV--YQSQIEQCINKVVVLSQINHRNVVGLLGCCLET------E  173 (256)
Q Consensus       103 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~------~  173 (256)
                      .++|++.+.||+|+||.||+|... +++.||+|++...  ......++.+|+.+++.++||||+++++++...      .
T Consensus        61 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~~  140 (464)
T 3ttj_A           61 LKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEFQ  140 (464)
T ss_dssp             ETTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEESGGGSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCCSTTTCC
T ss_pred             cCCeEEEEEeecCCCeEEEEEEECCCCCEEEEEEECccccChHHHHHHHHHHHHHHhCCCCCCCcEEEEEccCCccccCC
Confidence            478999999999999999999875 6889999998653  344567889999999999999999999999754      4


Q ss_pred             EEEEEEecCCCC-------CCCHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCce
Q 047066          174 VPLLVNEFVKLP-------TISWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQ  233 (256)
Q Consensus       174 ~~~lv~e~~~~~-------~l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~  233 (256)
                      ..++||||++++       .+++.....++.|++             |||||+|||++.++.+||+|||+|+......  
T Consensus       141 ~~~lv~E~~~~~l~~~~~~~l~~~~~~~~~~qil~aL~~lH~~~iiHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~--  218 (464)
T 3ttj_A          141 DVYLVMELMDANLCQVIQMELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSF--  218 (464)
T ss_dssp             EEEEEEECCSEEHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTSCEEECCCCCC-----CC--
T ss_pred             eEEEEEeCCCCCHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHCCcccCCCChHhEEEeCCCCEEEEEEEeeeecCCCc--
Confidence            579999999874       356666666666655             6999999999999999999999998765432  


Q ss_pred             eeeeeeecccc----cccccCCCCCCC
Q 047066          234 LSTMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       234 ~~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      ..+..+||+.|    .+.+..++.++|
T Consensus       219 ~~~~~~gt~~y~aPE~~~~~~~~~~~D  245 (464)
T 3ttj_A          219 MMTPYVVTRYYRAPEVILGMGYKENVD  245 (464)
T ss_dssp             CC----CCCTTCCHHHHTTCCCCTTHH
T ss_pred             ccCCCcccccccCHHHHcCCCCCHHHH
Confidence            23446799999    566677888876

>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A*

Probab=99.90  E-value=2.5e-23  Score=183.05  Aligned_cols=154  Identities=24%  Similarity=0.343  Sum_probs=121.9

Q ss_pred             cCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEeccc--ChhHHHHHHHHHHHHHhCCCCcccceeeEEEEC-----CE
Q 047066          103 TNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIV--YQSQIEQCINKVVVLSQINHRNVVGLLGCCLET-----EV  174 (256)
Q Consensus       103 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~-----~~  174 (256)
                      .++|.+.+.||+|+||.||+|... +++.||+|++...  .......+.+|+.+++.++||||+++++++...     +.
T Consensus        25 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~  104 (432)
T 3n9x_A           25 PDNYIIKHLIGRGSYGYVYLAYDKNTEKNVAIKKVNRMFEDLIDCKRILREITILNRLKSDYIIRLYDLIIPDDLLKFDE  104 (432)
T ss_dssp             CTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSTTTSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCCC
T ss_pred             cCCEEEEEEEeecCCEEEEEEEECCCCcEEEEEEeCchhcChHHHHHHHHHHHHHHHcCCCCcceEEEEEecCCCCcCCe
Confidence            368999999999999999999975 6889999998653  344557899999999999999999999999875     57


Q ss_pred             EEEEEecCCC---------CCCCHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCc
Q 047066          175 PLLVNEFVKL---------PTISWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDET  232 (256)
Q Consensus       175 ~~lv~e~~~~---------~~l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~  232 (256)
                      .++||||+++         +.+++.....++.|++             |||||+|||++.++.+||+|||+|+.......
T Consensus       105 ~~lv~e~~~~~L~~~~~~~~~l~~~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~~kL~DFGla~~~~~~~~  184 (432)
T 3n9x_A          105 LYIVLEIADSDLKKLFKTPIFLTEEHIKTILYNLLLGENFIHESGIIHRDLKPANCLLNQDCSVKVCDFGLARTINSEKD  184 (432)
T ss_dssp             EEEEEECCSEEHHHHHHSSCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCTTCEEC-----
T ss_pred             EEEEEecCCcCHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHeEECCCCCEEEccCCCccccccccc
Confidence            9999999975         4477777777777766             69999999999999999999999998754322


Q ss_pred             e---------------------eeeeeeecccc---c--ccccCCCCCCC
Q 047066          233 Q---------------------LSTMVQGTLGY---Y--LHTSQGTLNKE  256 (256)
Q Consensus       233 ~---------------------~~~~~~Gt~~y---~--~~~~~~t~ksD  256 (256)
                      .                     ..+..+||++|   +  .....++.++|
T Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~~~~~~~~~~~~D  234 (432)
T 3n9x_A          185 TNIVNDLEENEEPGPHNKNLKKQLTSHVVTRWYRAPELILLQENYTKSID  234 (432)
T ss_dssp             --------------------------CCCCCTTCCHHHHTTCSCCCTHHH
T ss_pred             ccccccccccccccccccchhccccCCCCCccccCHHHHhcCCCCCcccc
Confidence            1                     12455799999   2  35666787766

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II}

Probab=99.90  E-value=1.4e-23  Score=178.80  Aligned_cols=158  Identities=23%  Similarity=0.217  Sum_probs=119.4

Q ss_pred             HHhhcCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEeccc-----ChhHHHHHHHHHHHHHhCCCCcccceeeEEEEC
Q 047066           99 LKIATNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIV-----YQSQIEQCINKVVVLSQINHRNVVGLLGCCLET  172 (256)
Q Consensus        99 ~~~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~-----~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~  172 (256)
                      .....++|++.+.||+|+||.||+|... ++..+|+|.+...     .....+.+.+|+.+++.++||||+++++++.+.
T Consensus        21 ~~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~  100 (345)
T 3hko_A           21 LLELQKKYHLKGAIGQGSYGVVRVAIENQTRAIRAIKIMNKNKIRQINPKDVERIKTEVRLMKKLHHPNIARLYEVYEDE  100 (345)
T ss_dssp             HHHHHHHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHC---CHHHHHHHHHHHHHHCCCTTBCCEEEEEECS
T ss_pred             hhhhhhheeecceeeecCCeEEEEEEECCCCceEEEeehhhhhhcccCHHHHHHHHHHHHHHHhCCCCCcceeehhhccC
Confidence            3445578999999999999999999975 6889999987542     334557899999999999999999999999999


Q ss_pred             CEEEEEEecCCCCCCC--------------------------------------------------HHHHHHHHHHHH--
Q 047066          173 EVPLLVNEFVKLPTIS--------------------------------------------------WEVRIRIAAETA--  200 (256)
Q Consensus       173 ~~~~lv~e~~~~~~l~--------------------------------------------------~~~~~~~~~~i~--  200 (256)
                      +..++||||+++++|.                                                  +.....++.|++  
T Consensus       101 ~~~~lv~e~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~  180 (345)
T 3hko_A          101 QYICLVMELCHGGHLLDKLNVFIDDSTGKCAMDVVKTQICPCPECNEEAINGSIHGFRESLDFVQREKLISNIMRQIFSA  180 (345)
T ss_dssp             SEEEEEEECCCSCBHHHHEEEEEETTTTEEEEEEECCCCCCSHHHHHHHHHSCC--CEEECCHHHHHHHHHHHHHHHHHH
T ss_pred             CeEEEEEeCCCCCcHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHH
Confidence            9999999999988762                                                  222334555544  


Q ss_pred             -----------hccCCCcEEEcCCC--cEEEEecCCceecCCCC---ceeeeeeeecccc----ccc--ccCCCCCCC
Q 047066          201 -----------EDIKSINILLDDNY--TTKVCDFGASKLVPIDE---TQLSTMVQGTLGY----YLH--TSQGTLNKE  256 (256)
Q Consensus       201 -----------rdlk~~NiLi~~~~--~~ki~DFGla~~~~~~~---~~~~~~~~Gt~~y----~~~--~~~~t~ksD  256 (256)
                                 +||||+|||++.++  .+||+|||+++.+....   ........||+.|    .+.  .+.++.++|
T Consensus       181 l~~LH~~~ivH~Dlkp~NIll~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~D  258 (345)
T 3hko_A          181 LHYLHNQGICHRDIKPENFLFSTNKSFEIKLVDFGLSKEFYKLNNGEYYGMTTKAGTPYFVAPEVLNTTNESYGPKCD  258 (345)
T ss_dssp             HHHHHHTTEECCCCCGGGEEESCSSSCCEEECCCTTCEEGGGTTCC--------CCCGGGCCHHHHTCSSSCCCTHHH
T ss_pred             HHHHHHCCccccCCChhhEEEecCCCceEEEeeccccccccccCccccccccccCCCccccCchhhccCCCCCCcHHH
Confidence                       69999999998776  89999999998764322   1223445699999    332  256777765

>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens}

Probab=99.90  E-value=3.8e-23  Score=172.89  Aligned_cols=141  Identities=27%  Similarity=0.350  Sum_probs=112.1

Q ss_pred             cCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccCh--------------------------hHHHHHHHHHHHHH
Q 047066          103 TNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVYQ--------------------------SQIEQCINKVVVLS  155 (256)
Q Consensus       103 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~--------------------------~~~~~~~~E~~~l~  155 (256)
                      .++|++.+.||+|+||.||+|... +++.||+|.+.....                          ...+.+.+|+.+++
T Consensus        12 ~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~   91 (298)
T 2zv2_A           12 LNQYTLKDEIGKGSYGVVKLAYNENDNTYYAMKVLSKKKLIRQAGFPRRPPPRGTRPAPGGCIQPRGPIEQVYQEIAILK   91 (298)
T ss_dssp             ETTEEEEEEEEC--CCEEEEEEETTTTEEEEEEEEECC-------------------------------CHHHHHHHHHH
T ss_pred             ecceEEEeEEeecCCEEEEEEEECCCCcEEEEEEeehhhhhhhcccccccccccccccccccccccchHHHHHHHHHHHH
Confidence            468999999999999999999975 688999998754321                          12356889999999


Q ss_pred             hCCCCcccceeeEEEE--CCEEEEEEecCCCCC---------CCHHHHHHHHHHHH-------------hccCCCcEEEc
Q 047066          156 QINHRNVVGLLGCCLE--TEVPLLVNEFVKLPT---------ISWEVRIRIAAETA-------------EDIKSINILLD  211 (256)
Q Consensus       156 ~l~h~niv~l~~~~~~--~~~~~lv~e~~~~~~---------l~~~~~~~~~~~i~-------------rdlk~~NiLi~  211 (256)
                      .++||||+++++++..  .+..+++|||+++++         +++.....++.|++             +||||+|||++
T Consensus        92 ~l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dlkp~Nil~~  171 (298)
T 2zv2_A           92 KLDHPNVVKLVEVLDDPNEDHLYMVFELVNQGPVMEVPTLKPLSEDQARFYFQDLIKGIEYLHYQKIIHRDIKPSNLLVG  171 (298)
T ss_dssp             TCCCTTBCCEEEEEECSSSSEEEEEEECCTTCBSCCSSCSSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEEC
T ss_pred             hCCCCCCCeEEEEEEcCCCCEEEEEEecCCCCcHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHEEEC
Confidence            9999999999999986  568999999998755         46666667776665             69999999999


Q ss_pred             CCCcEEEEecCCceecCCCCceeeeeeeecccc
Q 047066          212 DNYTTKVCDFGASKLVPIDETQLSTMVQGTLGY  244 (256)
Q Consensus       212 ~~~~~ki~DFGla~~~~~~~~~~~~~~~Gt~~y  244 (256)
                      .++.+||+|||+++........ .....||+.|
T Consensus       172 ~~~~~kl~Dfg~~~~~~~~~~~-~~~~~gt~~y  203 (298)
T 2zv2_A          172 EDGHIKIADFGVSNEFKGSDAL-LSNTVGTPAF  203 (298)
T ss_dssp             TTSCEEECCCTTCEECSSSSCE-ECCCCSCGGG
T ss_pred             CCCCEEEecCCCcccccccccc-ccCCcCCccc
Confidence            9999999999999987544332 2334699999

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...

Probab=99.90  E-value=5.8e-24  Score=183.72  Aligned_cols=156  Identities=21%  Similarity=0.357  Sum_probs=112.8

Q ss_pred             hhcCCCcccceeeeeCceEEEEEEEC----CCcEEEEEEeccc-ChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEE
Q 047066          101 IATNNYAYDRMIGRGGYGTVFLGSLS----DNKAIAIKKSRIV-YQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVP  175 (256)
Q Consensus       101 ~~~~~~~~~~~lg~G~~g~V~~~~~~----~~~~vavK~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~  175 (256)
                      +..++|++.+.||+|+||.||+|..+    ++..||+|.++.. .....+.+.+|+.+++.++||||+++++++...+..
T Consensus        42 ~~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~  121 (373)
T 2qol_A           42 LDATNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPV  121 (373)
T ss_dssp             CCGGGCCCCEEEEECSSSEEEEC-CBCTTSCBCCEEEEECCTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSC
T ss_pred             cCHhhceeeeEEeeCCCeEEEEEEEecCCCCceeEEEEEecCccCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCce
Confidence            44568999999999999999999864    4678999998754 345567899999999999999999999999999999


Q ss_pred             EEEEecCCCCC-----------CCHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCC
Q 047066          176 LLVNEFVKLPT-----------ISWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDE  231 (256)
Q Consensus       176 ~lv~e~~~~~~-----------l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~  231 (256)
                      ++||||+++++           +++.....++.+++             |||||+|||++.++.+||+|||+++....+.
T Consensus       122 ~lv~e~~~~~sL~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~  201 (373)
T 2qol_A          122 MIVTEYMENGSLDSFLRKHDAQFTVIQLVGMLRGIASGMKYLSDMGYVHRDLAARNILINSNLVCKVSDFGLGRVLEDDP  201 (373)
T ss_dssp             EEEEECCTTCBHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTCCEEECCC----------
T ss_pred             EEEEeCCCCCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHCCeeCCCCCcceEEEcCCCCEEECcCccccccccCC
Confidence            99999998755           45566666776665             6999999999999999999999998875443


Q ss_pred             ceee--eeeeecccc----cccccCCCCCCC
Q 047066          232 TQLS--TMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       232 ~~~~--~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      ....  ....+|+.|    .+.++.++.++|
T Consensus       202 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~D  232 (373)
T 2qol_A          202 EAAYTTRGGKIPIRWTSPEAIAYRKFTSASD  232 (373)
T ss_dssp             ------------CTTSCHHHHHHCCCCHHHH
T ss_pred             ccceeccCCCcCCCccChhhhccCCcCchhc
Confidence            2221  122356778    555666776665

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*

Probab=99.90  E-value=1.8e-23  Score=189.09  Aligned_cols=154  Identities=27%  Similarity=0.358  Sum_probs=124.6

Q ss_pred             hhcCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC---hhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEE
Q 047066          101 IATNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY---QSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPL  176 (256)
Q Consensus       101 ~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~  176 (256)
                      +..++|++.+.||+|+||.||+|..+ +++.||+|.+....   ......+.+|+.+++.++||||+++++++.+.+..+
T Consensus       181 ~~~~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAvK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~~~l~  260 (576)
T 2acx_A          181 VTKNTFRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFVVSLAYAYETKDALC  260 (576)
T ss_dssp             CCGGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEE
T ss_pred             ccccceEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhHhhhhhHHHHHHHHHHHHHHHcCCCCEeeEEEEEeeCCEEE
Confidence            34567999999999999999999975 68999999885432   233467889999999999999999999999999999


Q ss_pred             EEEecCCCCCC------------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCC
Q 047066          177 LVNEFVKLPTI------------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDE  231 (256)
Q Consensus       177 lv~e~~~~~~l------------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~  231 (256)
                      +||||+++|+|            ++.....++.+++             |||||+|||++.++.+||+|||+|+.+....
T Consensus       261 lVmEy~~gg~L~~~l~~~~~~~l~e~~~~~i~~qIl~aL~yLH~~gIvHrDLKPeNILld~~g~vKL~DFGla~~~~~~~  340 (576)
T 2acx_A          261 LVLTLMNGGDLKFHIYHMGQAGFPEARAVFYAAEICCGLEDLHRERIVYRDLKPENILLDDHGHIRISDLGLAVHVPEGQ  340 (576)
T ss_dssp             EEECCCCSCBHHHHHHSSSSCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTSCEEECCCTTCEECCTTC
T ss_pred             EEEEcCCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHCCEeccCCchheEEEeCCCCeEEEecccceecccCc
Confidence            99999988664            5555566666655             6999999999999999999999999875443


Q ss_pred             ceeeeeeeecccc----cccccCCCCCCC
Q 047066          232 TQLSTMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       232 ~~~~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      .  ....+||+.|    .+.+..++.++|
T Consensus       341 ~--~~~~~GT~~Y~APEvl~~~~~~~~~D  367 (576)
T 2acx_A          341 T--IKGRVGTVGYMAPEVVKNERYTFSPD  367 (576)
T ss_dssp             C--EECCCSCGGGCCHHHHTTCEESSHHH
T ss_pred             c--ccccCCCccccCHHHHcCCCCCccch
Confidence            2  2335799999    455556776665

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*

Probab=99.90  E-value=2.1e-23  Score=176.81  Aligned_cols=141  Identities=26%  Similarity=0.372  Sum_probs=114.7

Q ss_pred             CCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC-hhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEec
Q 047066          104 NNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY-QSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEF  181 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~  181 (256)
                      ++|++.+.||+|+||.||+|... +++.||+|.+.... ....+.+.+|+.+++.++||||+++++++...+..+++|||
T Consensus         7 ~~y~i~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~e~   86 (323)
T 3tki_A            7 EDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLFLEY   86 (323)
T ss_dssp             TCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC-------CHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEEC
T ss_pred             hhceeeeEEecCCCEEEEEEEECCCCcEEEEEEEEcccccchHHHHHHHHHHHHhCCCCCCCeEEEEEecCCeEEEEEEc
Confidence            68999999999999999999976 78899999886433 23346688999999999999999999999999999999999


Q ss_pred             CCCCC----------CCHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCce-eeee
Q 047066          182 VKLPT----------ISWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQ-LSTM  237 (256)
Q Consensus       182 ~~~~~----------l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~-~~~~  237 (256)
                      +++++          +++.....++.|++             +||||+|||++.++.+||+|||+++.+..+... ....
T Consensus        87 ~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~aL~~LH~~givH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~  166 (323)
T 3tki_A           87 CSGGELFDRIEPDIGMPEPDAQRFFHQLMAGVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNK  166 (323)
T ss_dssp             CTTEEGGGGSBTTTBCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECCCTTCEECEETTEECCBCS
T ss_pred             CCCCcHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHCCccccccchHHEEEeCCCCEEEEEeeccceeccCCcccccCC
Confidence            98754          46677777777766             699999999999999999999999876433222 2234


Q ss_pred             eeecccc
Q 047066          238 VQGTLGY  244 (256)
Q Consensus       238 ~~Gt~~y  244 (256)
                      .+||+.|
T Consensus       167 ~~gt~~y  173 (323)
T 3tki_A          167 MCGTLPY  173 (323)
T ss_dssp             CCSCGGG
T ss_pred             CccCcCc
Confidence            5699999

>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A*

Probab=99.89  E-value=2.8e-23  Score=175.44  Aligned_cols=153  Identities=20%  Similarity=0.273  Sum_probs=107.3

Q ss_pred             cCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC-hhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEe
Q 047066          103 TNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY-QSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNE  180 (256)
Q Consensus       103 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e  180 (256)
                      .++|++.+.||+|+||.||+|..+ +++.||+|.+.... ....+.+.+|+.+++.++||||+++++++...+..++|||
T Consensus         4 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e   83 (317)
T 2pmi_A            4 SSQFKQLEKLGNGTYATVYKGLNKTTGVYVALKEVKLDSEEGTPSTAIREISLMKELKHENIVRLYDVIHTENKLTLVFE   83 (317)
T ss_dssp             ---------------CEEEEEECSSSCCEEEEEEEECCSTTCSCHHHHHHHHHHTTCCBTTBCCEEEEECCTTEEEEEEE
T ss_pred             ccceeEeeEECCCCCEEEEEEEECCCCcEEEEEEeecccccccHHHHHHHHHHHHhcCCCCcceEEEEEEECCeEEEEEE
Confidence            357899999999999999999965 68899999886543 3334678899999999999999999999999999999999


Q ss_pred             cCCCC---------------CCCHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCc
Q 047066          181 FVKLP---------------TISWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDET  232 (256)
Q Consensus       181 ~~~~~---------------~l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~  232 (256)
                      |+++.               .+++.....++.|++             +||||+|||++.++.+||+|||+++....+..
T Consensus        84 ~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~lH~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~  163 (317)
T 2pmi_A           84 FMDNDLKKYMDSRTVGNTPRGLELNLVKYFQWQLLQGLAFCHENKILHRDLKPQNLLINKRGQLKLGDFGLARAFGIPVN  163 (317)
T ss_dssp             CCCCBHHHHHHHHHSSSCCCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCSSCEETTSCCC
T ss_pred             ecCCCHHHHHHhccccccccCCCHHHHHHHHHHHHHHHHHHHHCCeeeCCCChHHeEEcCCCCEEECcCccceecCCCcc
Confidence            99851               245555555555655             69999999999999999999999998754332


Q ss_pred             eeeeeeeecccc----cccc-cCCCCCCC
Q 047066          233 QLSTMVQGTLGY----YLHT-SQGTLNKE  256 (256)
Q Consensus       233 ~~~~~~~Gt~~y----~~~~-~~~t~ksD  256 (256)
                      . .....||+.|    .+.+ ..++.++|
T Consensus       164 ~-~~~~~~t~~y~aPE~~~~~~~~~~~~D  191 (317)
T 2pmi_A          164 T-FSSEVVTLWYRAPDVLMGSRTYSTSID  191 (317)
T ss_dssp             C-CCCCCSCCTTCCHHHHTTCCCCCTHHH
T ss_pred             c-CCCCcccccccCchHhhCCCCCCcHHH
Confidence            2 2234589999    2322 35677665

>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*

Probab=99.89  E-value=7.4e-24  Score=183.01  Aligned_cols=154  Identities=23%  Similarity=0.292  Sum_probs=112.8

Q ss_pred             hcCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC---hhHHHHHHHHHHH-HHhCCCCcccceeeEEEECCEEE
Q 047066          102 ATNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY---QSQIEQCINKVVV-LSQINHRNVVGLLGCCLETEVPL  176 (256)
Q Consensus       102 ~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~-l~~l~h~niv~l~~~~~~~~~~~  176 (256)
                      ..++|++.+.||+|+||+||+|+.+ ++..+|+|.+....   ......+..|..+ ++.++||||+++++++.+.+..+
T Consensus        36 ~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~e~~~ll~~~~hp~Iv~l~~~~~~~~~~~  115 (373)
T 2r5t_A           36 KPSDFHFLKVIGKGSFGKVLLARHKAEEVFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGLHFSFQTADKLY  115 (373)
T ss_dssp             CGGGEEEEEEEECCTTCEEEEEEETTTCCEEEEEEEEGGGBC-------------CCBCCCCCTTBCCEEEEEECSSEEE
T ss_pred             ChhheEEEEEEeeCCCeEEEEEEEcCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHHhCCCCCCCCEEEEEEeCCEEE
Confidence            3468999999999999999999976 57899999886432   2334566777776 46789999999999999999999


Q ss_pred             EEEecCCCCCC----------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCce
Q 047066          177 LVNEFVKLPTI----------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQ  233 (256)
Q Consensus       177 lv~e~~~~~~l----------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~  233 (256)
                      +||||+++|+|          +......++.+++             |||||+|||++.++.+||+|||+|+....... 
T Consensus       116 lv~E~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~givHrDlkp~NIll~~~g~ikL~DFG~a~~~~~~~~-  194 (373)
T 2r5t_A          116 FVLDYINGGELFYHLQRERCFLEPRARFYAAEIASALGYLHSLNIVYRDLKPENILLDSQGHIVLTDFGLCKENIEHNS-  194 (373)
T ss_dssp             EEEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTSCEEECCCCBCGGGBCCCC-
T ss_pred             EEEeCCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCceecCCCHHHEEECCCCCEEEeeCccccccccCCC-
Confidence            99999999775          3444444555544             69999999999999999999999986433222 


Q ss_pred             eeeeeeecccc----cccccCCCCCCC
Q 047066          234 LSTMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       234 ~~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      .....+||+.|    .+.+..++.++|
T Consensus       195 ~~~~~~gt~~y~aPE~~~~~~~~~~~D  221 (373)
T 2r5t_A          195 TTSTFCGTPEYLAPEVLHKQPYDRTVD  221 (373)
T ss_dssp             CCCSBSCCCCCCCHHHHTTCCCCTHHH
T ss_pred             ccccccCCccccCHHHhCCCCCCchhh
Confidence            23445799999    555666776665

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A*

Probab=99.89  E-value=4.7e-23  Score=170.39  Aligned_cols=151  Identities=19%  Similarity=0.255  Sum_probs=124.6

Q ss_pred             CCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEecC
Q 047066          104 NNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEFV  182 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~  182 (256)
                      ++|++.+.||+|+||.||+|..+ ++..+|+|.+........+.+.+|+.+++.++||||+++++++...+..+++|||+
T Consensus         9 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~   88 (277)
T 3f3z_A            9 QYYTLENTIGRGSWGEVKIAVQKGTRIRRAAKKIPKYFVEDVDRFKQEIEIMKSLDHPNIIRLYETFEDNTDIYLVMELC   88 (277)
T ss_dssp             HHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEEECC
T ss_pred             hhEEeeeEEeecCCEEEEEEEeCCCCcEEEEEeehhhccchHHHHHHHHHHHHhCCCCCEeeEEEEEecCCeEEEEEecc
Confidence            57899999999999999999976 57789999987655555678999999999999999999999999999999999999


Q ss_pred             CCCCC----------CHHHHHHHHHHHH-------------hccCCCcEEE---cCCCcEEEEecCCceecCCCCceeee
Q 047066          183 KLPTI----------SWEVRIRIAAETA-------------EDIKSINILL---DDNYTTKVCDFGASKLVPIDETQLST  236 (256)
Q Consensus       183 ~~~~l----------~~~~~~~~~~~i~-------------rdlk~~NiLi---~~~~~~ki~DFGla~~~~~~~~~~~~  236 (256)
                      ++++|          ++.....++.+++             +||||+|||+   +.++.+||+|||++........  ..
T Consensus        89 ~~~~L~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~~~~~l~Dfg~~~~~~~~~~--~~  166 (277)
T 3f3z_A           89 TGGELFERVVHKRVFRESDAARIMKDVLSAVAYCHKLNVAHRDLKPENFLFLTDSPDSPLKLIDFGLAARFKPGKM--MR  166 (277)
T ss_dssp             CSCBHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEESSSSTTCCEEECCCTTCEECCTTSC--BC
T ss_pred             CCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCccCCCCCHHHEEEecCCCCCcEEEEecccceeccCccc--hh
Confidence            88665          5555666666665             5999999999   7889999999999988754332  23


Q ss_pred             eeeecccc---cccccCCCCCCC
Q 047066          237 MVQGTLGY---YLHTSQGTLNKE  256 (256)
Q Consensus       237 ~~~Gt~~y---~~~~~~~t~ksD  256 (256)
                      ...||+.|   +...+.++.++|
T Consensus       167 ~~~~t~~y~aPE~~~~~~~~~~D  189 (277)
T 3f3z_A          167 TKVGTPYYVSPQVLEGLYGPECD  189 (277)
T ss_dssp             CCCSCTTTCCHHHHTTCBCTTHH
T ss_pred             ccCCCCCccChHHhcccCCchhh
Confidence            34599999   444566787776

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}

Probab=99.89  E-value=5.5e-23  Score=173.20  Aligned_cols=152  Identities=20%  Similarity=0.217  Sum_probs=120.0

Q ss_pred             cCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC--hhHHHHHHHHHHHHHhC-CCCcccceeeEEEECCEEEEE
Q 047066          103 TNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY--QSQIEQCINKVVVLSQI-NHRNVVGLLGCCLETEVPLLV  178 (256)
Q Consensus       103 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~lv  178 (256)
                      .++|++.+.||+|+||+||+|... +++.||+|++....  .........|+..+..+ +||||+++++++...+..++|
T Consensus        56 ~~~y~~~~~LG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~~~~~~~h~~iv~l~~~~~~~~~~~lv  135 (311)
T 3p1a_A           56 QQSFQRLSRLGHGSYGEVFKVRSKEDGRLYAVKRSMSPFRGPKDRARKLAEVGSHEKVGQHPCCVRLEQAWEEGGILYLQ  135 (311)
T ss_dssp             HHHEEEEEEEEEETTEEEEEEEETTTSCEEEEEEESSSCCSHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEE
T ss_pred             hhheeeeheeccCCCeEEEEEEECCCCeEEEEEEecccccChHHHHHHHHHHHHHHHhcCCCcEEEEEEEEEeCCEEEEE
Confidence            367999999999999999999986 78999999875432  33445566677666665 999999999999999999999


Q ss_pred             EecCCC----------CCCCHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceee
Q 047066          179 NEFVKL----------PTISWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLS  235 (256)
Q Consensus       179 ~e~~~~----------~~l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~  235 (256)
                      |||+.+          ..+++.....++.+++             +||||+|||++.++.+||+|||+++......  ..
T Consensus       136 ~e~~~~~L~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~Dikp~NIll~~~~~~kl~DFG~a~~~~~~~--~~  213 (311)
T 3p1a_A          136 TELCGPSLQQHCEAWGASLPEAQVWGYLRDTLLALAHLHSQGLVHLDVKPANIFLGPRGRCKLGDFGLLVELGTAG--AG  213 (311)
T ss_dssp             EECCCCBHHHHHHHHCSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECGGGCEEECCCTTCEECC-------
T ss_pred             EeccCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCEecCCCCHHHEEECCCCCEEEccceeeeecccCC--CC
Confidence            999965          3467777777777766             6999999999999999999999998765432  23


Q ss_pred             eeeeecccc---cccccCCCCCCC
Q 047066          236 TMVQGTLGY---YLHTSQGTLNKE  256 (256)
Q Consensus       236 ~~~~Gt~~y---~~~~~~~t~ksD  256 (256)
                      ....||+.|   +...+.++.++|
T Consensus       214 ~~~~gt~~y~aPE~~~~~~~~~~D  237 (311)
T 3p1a_A          214 EVQEGDPRYMAPELLQGSYGTAAD  237 (311)
T ss_dssp             -CCCCCGGGCCGGGGGTCCSTHHH
T ss_pred             cccCCCccccCHhHhcCCCCchhh
Confidence            344699999   545567887776

>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe}

Probab=99.89  E-value=2.1e-23  Score=177.77  Aligned_cols=139  Identities=21%  Similarity=0.313  Sum_probs=114.6

Q ss_pred             CCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC---hhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEE
Q 047066          104 NNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY---QSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVN  179 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~  179 (256)
                      ++|.+.+.||+|+||.||+|... +++.||+|.+....   ......+.+|+.+++.++||||+++++++...+..++||
T Consensus         9 ~~Y~i~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~lv~   88 (336)
T 3h4j_B            9 GPYIIRETLGEGSFGKVKLATHYKTQQKVALKFISRQLLKKSDMHMRVEREISYLKLLRHPHIIKLYDVITTPTDIVMVI   88 (336)
T ss_dssp             TTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCSHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             CCEEEEEEEecCCCeEEEEEEECCCCCEEEEEEEehHHccchhHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEE
Confidence            67999999999999999999974 78899999875432   122357889999999999999999999999999999999


Q ss_pred             ecCCC---------CCCCHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceeeee
Q 047066          180 EFVKL---------PTISWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTM  237 (256)
Q Consensus       180 e~~~~---------~~l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~~  237 (256)
                      ||+.+         +.+++.....++.|++             |||||+|||+++++.+||+|||++........  ...
T Consensus        89 E~~~g~l~~~l~~~~~l~~~~~~~i~~qi~~aL~~LH~~givH~Dlkp~NIll~~~~~~kl~DFG~s~~~~~~~~--~~~  166 (336)
T 3h4j_B           89 EYAGGELFDYIVEKKRMTEDEGRRFFQQIICAIEYCHRHKIVHRDLKPENLLLDDNLNVKIADFGLSNIMTDGNF--LKT  166 (336)
T ss_dssp             CCCCEEHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHHTCCCCCCSTTTEEECTTCCEEECCSSCTBTTTTSBT--TCC
T ss_pred             ECCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeEecCCchhhEEEcCCCCEEEEEeccceeccCCcc--ccc
Confidence            99954         3456666677777665             69999999999999999999999987654322  233


Q ss_pred             eeecccc
Q 047066          238 VQGTLGY  244 (256)
Q Consensus       238 ~~Gt~~y  244 (256)
                      .+||+.|
T Consensus       167 ~~gt~~y  173 (336)
T 3h4j_B          167 SCGSPNY  173 (336)
T ss_dssp             CTTSTTT
T ss_pred             ccCCcCc
Confidence            4699999

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A

Probab=99.89  E-value=1.5e-23  Score=185.34  Aligned_cols=153  Identities=20%  Similarity=0.364  Sum_probs=122.1

Q ss_pred             HHHHhhcCCCcccceeeeeCceEEEEEEECCCcEEEEEEecccChhHHHHHHHHHHHHHhCCCCcccceeeEEEECC-EE
Q 047066           97 GELKIATNNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLETE-VP  175 (256)
Q Consensus        97 ~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~-~~  175 (256)
                      ..|++..++|++.+.||+|+||.||+|.+ .++.||||.++...  ..+.+.+|+.++++++||||+++++++...+ ..
T Consensus       186 ~~~~i~~~~~~~~~~lG~G~fg~V~~~~~-~~~~vavK~~~~~~--~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~  262 (450)
T 1k9a_A          186 SGWALNMKELKLLQTIGKGEFGDVMLGDY-RGNKVAVKCIKNDA--TAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGL  262 (450)
T ss_dssp             TTCBCCGGGEEEEEEEEECSSEEEEEEEE-TTEEEEEEEESSCT--TSHHHHHHHHHHHTCCCTTBCCEEEEEECTTSCE
T ss_pred             cccccChHHeEEEeeecCcCCeeEEEEEe-cCCeEEEEEeCCch--HHHHHHHHHHHHHhccCCCEEEEEEEEEcCCCce
Confidence            44667778999999999999999999998 47799999987543  3467999999999999999999999988755 79


Q ss_pred             EEEEecCCCCCC------------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCC
Q 047066          176 LLVNEFVKLPTI------------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPID  230 (256)
Q Consensus       176 ~lv~e~~~~~~l------------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~  230 (256)
                      ++||||+++|+|            +....+.++.|++             |||||+|||++.++.+||+|||+++.....
T Consensus       263 ~iv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~  342 (450)
T 1k9a_A          263 YIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGNNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASST  342 (450)
T ss_dssp             EEEEECCTTCBHHHHHHHHCTTTCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECTTSCEEECCCTTCEECC--
T ss_pred             EEEEEecCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCCHhhEEECCCCCEEEeeCCCccccccc
Confidence            999999998664            4555566666665             699999999999999999999999865322


Q ss_pred             Cceeeeeeeecccc----cccccCCCCCCC
Q 047066          231 ETQLSTMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       231 ~~~~~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      .    ....+|+.|    .+.++.++.++|
T Consensus       343 ~----~~~~~~~~y~aPE~~~~~~~~~~sD  368 (450)
T 1k9a_A          343 Q----DTGKLPVKWTAPEALREKKFSTKSD  368 (450)
T ss_dssp             --------CCCTTTSCHHHHHSSCCCHHHH
T ss_pred             c----cCCCCCcceeCHHHhcCCCCCcHHH
Confidence            1    223477788    555667777765

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A*

Probab=99.89  E-value=1.3e-23  Score=176.57  Aligned_cols=163  Identities=21%  Similarity=0.352  Sum_probs=125.9

Q ss_pred             cChHHHHhhcCCCcccceeeeeCceEEEEEEE------CCCcEEEEEEecccC-hhHHHHHHHHHHHHHhCCCCccccee
Q 047066           94 FTAGELKIATNNYAYDRMIGRGGYGTVFLGSL------SDNKAIAIKKSRIVY-QSQIEQCINKVVVLSQINHRNVVGLL  166 (256)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~------~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~  166 (256)
                      ....++.+..++|.+.+.||+|+||.||+|..      .++..||+|.+.... ....+.+.+|+.+++.++||||++++
T Consensus        13 ~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~   92 (314)
T 2ivs_A           13 LEDPKWEFPRKNLVLGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENASPSELRDLLSEFNVLKQVNHPHVIKLY   92 (314)
T ss_dssp             -CCTTTBCCGGGEEEEEEEEECSSSEEEEEEEETGGGCSSEEEEEEEECCTTCCHHHHHHHHHHHHHHTTCCCTTBCCEE
T ss_pred             cCCcccccchhheeeeeeecccCCeeEEEEEEeccCcccCcceEEEEeccCCCCHHHHHHHHHHHHHHhhCCCCceeeEE
Confidence            33445666778999999999999999999985      235789999986543 45567899999999999999999999


Q ss_pred             eEEEECCEEEEEEecCCCCCC----------------------------------CHHHHHHHHHHHH------------
Q 047066          167 GCCLETEVPLLVNEFVKLPTI----------------------------------SWEVRIRIAAETA------------  200 (256)
Q Consensus       167 ~~~~~~~~~~lv~e~~~~~~l----------------------------------~~~~~~~~~~~i~------------  200 (256)
                      +++...+..+++|||+++++|                                  ++.....++.|++            
T Consensus        93 ~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~iv  172 (314)
T 2ivs_A           93 GACSQDGPLLLIVEYAKYGSLRGFLRESRKVGPGYLGSGGSRNSSSLDHPDERALTMGDLISFAWQISQGMQYLAEMKLV  172 (314)
T ss_dssp             EEECSSSSCEEEEECCTTCBHHHHHHHTTTSTTEEC----------------CEECHHHHHHHHHHHHHHHHHHHHTTEE
T ss_pred             EEEecCCceEEEEeecCCCCHHHHHHHHhhccCCcccccccccccccccccccCcCHHHHHHHHHHHHHHHHHHHHCCCc
Confidence            999999999999999987654                                  3444555666655            


Q ss_pred             -hccCCCcEEEcCCCcEEEEecCCceecCCCCcee-eeeeeecccc----cccccCCCCCCC
Q 047066          201 -EDIKSINILLDDNYTTKVCDFGASKLVPIDETQL-STMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       201 -rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~-~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                       +||||+|||++.++.+||+|||+++......... .....||+.|    .+.+..++.++|
T Consensus       173 H~dikp~NIli~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~D  234 (314)
T 2ivs_A          173 HRDLAARNILVAEGRKMKISDFGLSRDVYEEDSYVKRSQGRIPVKWMAIESLFDHIYTTQSD  234 (314)
T ss_dssp             CCCCSGGGEEEETTTEEEECCCTTCEECTTTSCEECSSCCCSCGGGCCHHHHHHCEECHHHH
T ss_pred             ccccchheEEEcCCCCEEEccccccccccccccceeccCCCCcccccChhhhcCCCcCchhh
Confidence             5999999999999999999999999775443322 2233477778    344445555554

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7

Probab=99.89  E-value=1.3e-23  Score=178.80  Aligned_cols=160  Identities=22%  Similarity=0.326  Sum_probs=125.0

Q ss_pred             HHHHhhcCCCcccceeeeeCceEEEEEEEC------CCcEEEEEEecccC-hhHHHHHHHHHHHHHhCCCCcccceeeEE
Q 047066           97 GELKIATNNYAYDRMIGRGGYGTVFLGSLS------DNKAIAIKKSRIVY-QSQIEQCINKVVVLSQINHRNVVGLLGCC  169 (256)
Q Consensus        97 ~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~------~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~  169 (256)
                      ..+....++|++.+.||+|+||.||+|...      +++.||+|.++... ....+.+.+|+.+++.++||||+++++++
T Consensus        40 ~~~~~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~  119 (343)
T 1luf_A           40 LSLEYPRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDNPNIVKLLGVC  119 (343)
T ss_dssp             HHTBCCGGGCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEE
T ss_pred             ceeEecHHHCeeeeeeeecCCeeEEEEEecCcCCCCCceeEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEEE
Confidence            345667789999999999999999999974      34789999987543 44557899999999999999999999999


Q ss_pred             EECCEEEEEEecCCCCCC----------------------------------CHHHHHHHHHHHH-------------hc
Q 047066          170 LETEVPLLVNEFVKLPTI----------------------------------SWEVRIRIAAETA-------------ED  202 (256)
Q Consensus       170 ~~~~~~~lv~e~~~~~~l----------------------------------~~~~~~~~~~~i~-------------rd  202 (256)
                      ...+..+++|||+++++|                                  ++...+.++.|++             +|
T Consensus       120 ~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~~l~~LH~~~ivH~D  199 (343)
T 1luf_A          120 AVGKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSERKFVHRD  199 (343)
T ss_dssp             CSSSSCEEEEECCTTCBHHHHHHHTCC----------------------CCCCHHHHHHHHHHHHHHHHHHHHTTCCCSC
T ss_pred             ccCCceEEEEecCCCCcHHHHHHHhCcccccccccccccccccccccCCCCCCHHHHHHHHHHHHHHHHHHHhCCeecCC
Confidence            999999999999988554                                  4444555666655             69


Q ss_pred             cCCCcEEEcCCCcEEEEecCCceecCCCCc-eeeeeeeecccc----cccccCCCCCCC
Q 047066          203 IKSINILLDDNYTTKVCDFGASKLVPIDET-QLSTMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       203 lk~~NiLi~~~~~~ki~DFGla~~~~~~~~-~~~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      |||+|||++.++.+||+|||+++....... .......||+.|    .+.++.++.++|
T Consensus       200 lkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~D  258 (343)
T 1luf_A          200 LATRNCLVGENMVVKIADFGLSRNIYSADYYKADGNDAIPIRWMPPESIFYNRYTTESD  258 (343)
T ss_dssp             CSGGGEEECGGGCEEECCCSCHHHHTGGGCBC----CCBCGGGCCHHHHHHCCCCHHHH
T ss_pred             CCcceEEECCCCeEEEeecCCCcccccCccccccCCCcccceecChhhhccCCcCcccc
Confidence            999999999999999999999987643322 112334588888    445566666655

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ...

Probab=99.89  E-value=6.5e-24  Score=177.22  Aligned_cols=155  Identities=18%  Similarity=0.379  Sum_probs=118.2

Q ss_pred             hcCCCcccceeeeeCceEEEEEEE-----CCCcEEEEEEecccChhHHHHHHHHHHHHHhCCCCcccceeeEEEE--CCE
Q 047066          102 ATNNYAYDRMIGRGGYGTVFLGSL-----SDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLE--TEV  174 (256)
Q Consensus       102 ~~~~~~~~~~lg~G~~g~V~~~~~-----~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~--~~~  174 (256)
                      ..++|++.+.||+|+||.||+|++     .+++.||+|.+........+.+.+|+.+++.++||||+++++++..  ...
T Consensus         8 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~   87 (295)
T 3ugc_A            8 EERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRN   87 (295)
T ss_dssp             CGGGEEEEEEEEECSSEEEEEEEECTTCSSCCEEEEEEEESCCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECHHHHTS
T ss_pred             CHHHhhhhheeeccCCEEEEEEEEecccCCCCcEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCCCc
Confidence            457899999999999999999984     2588999999987777777889999999999999999999999865  456


Q ss_pred             EEEEEecCCCCCC-----------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCC
Q 047066          175 PLLVNEFVKLPTI-----------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPID  230 (256)
Q Consensus       175 ~~lv~e~~~~~~l-----------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~  230 (256)
                      .++||||+++++|           ++.....++.|++             +||||+|||++.++.+||+|||+++....+
T Consensus        88 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dikp~Nil~~~~~~~kl~Dfg~~~~~~~~  167 (295)
T 3ugc_A           88 LKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLGTKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQD  167 (295)
T ss_dssp             CEEEEECCTTCBHHHHHHHCGGGCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEEETTEEEECCCCSCC-----
T ss_pred             eEEEEEeCCCCCHHHHHHhcccccCHHHHHHHHHHHHHHHHHHhcCCcccCCCCHhhEEEcCCCeEEEccCcccccccCC
Confidence            8999999988665           4555566666655             699999999999999999999999877543


Q ss_pred             Ccee--eeeeeecccc----cccccCCCCCCC
Q 047066          231 ETQL--STMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       231 ~~~~--~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      ....  .....||+.|    .+.+..++.++|
T Consensus       168 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~D  199 (295)
T 3ugc_A          168 KEFFKVKEPGESPIFWYAPESLTESKFSVASD  199 (295)
T ss_dssp             --------CTTCGGGGCCHHHHHHCCCCHHHH
T ss_pred             cceeeeccCCCCccceeCcHHhcCCCCChHHH
Confidence            3221  1223466667    445566666655

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B

Probab=99.89  E-value=3.3e-23  Score=186.57  Aligned_cols=153  Identities=23%  Similarity=0.301  Sum_probs=123.9

Q ss_pred             cCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC---hhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEE
Q 047066          103 TNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY---QSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLV  178 (256)
Q Consensus       103 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv  178 (256)
                      .++|.+.+.||+|+||+||+|..+ +++.||+|.+....   ....+.+.+|+.+++.++||||+++++++.+.+..++|
T Consensus       184 ~~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~~~l~lV  263 (543)
T 3c4z_A          184 EDWFLDFRVLGRGGFGEVFACQMKATGKLYACKKLNKKRLKKRKGYQGAMVEKKILAKVHSRFIVSLAYAFETKTDLCLV  263 (543)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred             hhheEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEEhHHhhhhHHHHHHHHHHHHHHhcCCCCEeeEEEEEeeCCEEEEE
Confidence            367888899999999999999985 68999999886432   23346789999999999999999999999999999999


Q ss_pred             EecCCCCCC--------------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCC
Q 047066          179 NEFVKLPTI--------------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDE  231 (256)
Q Consensus       179 ~e~~~~~~l--------------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~  231 (256)
                      |||+++++|              ++.....++.|++             |||||+|||++.++.+||+|||+++.+....
T Consensus       264 mE~~~gg~L~~~l~~~~~~~~~l~e~~~~~~~~qi~~aL~~LH~~gIvHrDLKP~NILl~~~g~vkL~DFGla~~~~~~~  343 (543)
T 3c4z_A          264 MTIMNGGDIRYHIYNVDEDNPGFQEPRAIFYTAQIVSGLEHLHQRNIIYRDLKPENVLLDDDGNVRISDLGLAVELKAGQ  343 (543)
T ss_dssp             ECCCTTCBHHHHHHTSSTTSCSCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTSCEEECCCTTCEECCTTC
T ss_pred             EEeccCCCHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHHHcCCcccCCChHHEEEeCCCCEEEeecceeeeccCCC
Confidence            999988654              4555555565555             6999999999999999999999999875443


Q ss_pred             ceeeeeeeecccc----cccccCCCCCCC
Q 047066          232 TQLSTMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       232 ~~~~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      .. ....+||+.|    .+.+..++.++|
T Consensus       344 ~~-~~~~~GT~~Y~APE~l~~~~~~~~~D  371 (543)
T 3c4z_A          344 TK-TKGYAGTPGFMAPELLLGEEYDFSVD  371 (543)
T ss_dssp             CC-BCCCCSCTTTSCHHHHTTCCBCTHHH
T ss_pred             cc-cccccCCccccChhhhcCCCCChHHh
Confidence            22 2345799999    555666777665

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...

Probab=99.89  E-value=1.2e-23  Score=177.54  Aligned_cols=165  Identities=21%  Similarity=0.334  Sum_probs=128.4

Q ss_pred             cccChHHHHhhcCCCcccceeeeeCceEEEEEEEC------CCcEEEEEEecccC-hhHHHHHHHHHHHHHhCCCCcccc
Q 047066           92 KIFTAGELKIATNNYAYDRMIGRGGYGTVFLGSLS------DNKAIAIKKSRIVY-QSQIEQCINKVVVLSQINHRNVVG  164 (256)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~------~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~  164 (256)
                      ..+..+++++..++|++.+.||+|+||.||+|...      ++..||+|.+.... ......+.+|+.+++.++||||++
T Consensus        13 ~~~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~   92 (322)
T 1p4o_A           13 DVYVPDEWEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVR   92 (322)
T ss_dssp             SCCCCCTTBCCGGGEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTSCHHHHHHHHHHHHHGGGCCCTTBCC
T ss_pred             cccChhhhcchhhheeeeeEeccCCceEEEeeeecCccCCCCceEEEEEecccccCHHHHHHHHHHHHHHHhcCCCCEee
Confidence            34556678888899999999999999999999854      36789999886543 344567899999999999999999


Q ss_pred             eeeEEEECCEEEEEEecCCCCCCC--------------------HHHHHHHHHHHH-------------hccCCCcEEEc
Q 047066          165 LLGCCLETEVPLLVNEFVKLPTIS--------------------WEVRIRIAAETA-------------EDIKSINILLD  211 (256)
Q Consensus       165 l~~~~~~~~~~~lv~e~~~~~~l~--------------------~~~~~~~~~~i~-------------rdlk~~NiLi~  211 (256)
                      +++++...+..+++|||+++++|.                    +.....++.+++             +||||+|||++
T Consensus        93 ~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dikp~NIli~  172 (322)
T 1p4o_A           93 LLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLNANKFVHRDLAARNCMVA  172 (322)
T ss_dssp             EEEEECSSSSCEEEEECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHHHTTCBCSCCSGGGEEEC
T ss_pred             eEEEEccCCccEEEEEeCCCCcHHHHHHHhchhhccCCCCCCcCHHHHHHHHHHHHHHHHHHHHCCCccCCCccceEEEc
Confidence            999999999999999999987653                    334444555554             69999999999


Q ss_pred             CCCcEEEEecCCceecCCCCcee-eeeeeecccc----cccccCCCCCCC
Q 047066          212 DNYTTKVCDFGASKLVPIDETQL-STMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       212 ~~~~~ki~DFGla~~~~~~~~~~-~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      .++.+||+|||+++......... .....||+.|    .+.++.++.++|
T Consensus       173 ~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~D  222 (322)
T 1p4o_A          173 EDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSD  222 (322)
T ss_dssp             TTCCEEECCTTCCCGGGGGGCEEGGGSSEECGGGCCHHHHHHCCCCHHHH
T ss_pred             CCCeEEECcCccccccccccccccccCCCCCCCccChhhhccCCCCchhh
Confidence            99999999999998764332221 2234578888    444556666655

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens}

Probab=99.89  E-value=1.6e-22  Score=169.91  Aligned_cols=152  Identities=26%  Similarity=0.293  Sum_probs=116.8

Q ss_pred             CCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC--hhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEe
Q 047066          104 NNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY--QSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNE  180 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e  180 (256)
                      ++|++.+.||+|+||.||+|... +++.||+|.+....  ....+.+.+|+.++++++||||+++++++...+..++|||
T Consensus         3 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   82 (311)
T 4agu_A            3 EKYEKIGKIGEGSYGVVFKCRNRDTGQIVAIKKFLESEDDPVIKKIALREIRMLKQLKHPNLVNLLEVFRRKRRLHLVFE   82 (311)
T ss_dssp             CCEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECCCCC-HHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             ccceEeeEEeecCCeEEEEEEeCCCCcEEEEEEeeccccchHHHHHHHHHHHHHHhCCCCCccchhheeecCCeEEEEEE
Confidence            57899999999999999999976 58999999875443  3345678899999999999999999999999999999999


Q ss_pred             cCCCC----------CCCHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceeeee
Q 047066          181 FVKLP----------TISWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTM  237 (256)
Q Consensus       181 ~~~~~----------~l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~~  237 (256)
                      |++++          .+++.....++.+++             +||||+|||++.++.+||+|||+++........ ...
T Consensus        83 ~~~~~~l~~~~~~~~~~~~~~~~~i~~~l~~~l~~lH~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~-~~~  161 (311)
T 4agu_A           83 YCDHTVLHELDRYQRGVPEHLVKSITWQTLQAVNFCHKHNCIHRDVKPENILITKHSVIKLCDFGFARLLTGPSDY-YDD  161 (311)
T ss_dssp             CCSEEHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEECC---------
T ss_pred             eCCCchHHHHHhhhcCCCHHHHHHHHHHHHHHHHHHHHCCCcCCCCChhhEEEcCCCCEEEeeCCCchhccCcccc-cCC
Confidence            99864          356666666666655             599999999999999999999999887543322 234


Q ss_pred             eeecccc----ccc-ccCCCCCCC
Q 047066          238 VQGTLGY----YLH-TSQGTLNKE  256 (256)
Q Consensus       238 ~~Gt~~y----~~~-~~~~t~ksD  256 (256)
                      ..||+.|    .+. ...++.++|
T Consensus       162 ~~~~~~y~aPE~~~~~~~~~~~~D  185 (311)
T 4agu_A          162 EVATRWYRSPELLVGDTQYGPPVD  185 (311)
T ss_dssp             ----GGGCCHHHHHTCSCCCTHHH
T ss_pred             CcCCccccChHHHhcCCCCCcchh
Confidence            4689999    232 355677665

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}

Probab=99.89  E-value=2.4e-22  Score=169.08  Aligned_cols=154  Identities=18%  Similarity=0.222  Sum_probs=114.6

Q ss_pred             cCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC---hhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEE
Q 047066          103 TNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY---QSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLV  178 (256)
Q Consensus       103 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv  178 (256)
                      .++|++.+.||+|+||.||+|... +++.||+|.+....   ....+.+.+|+.+++.++||||+++++++...+..+++
T Consensus        33 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv  112 (309)
T 2h34_A           33 FGPYRLRRLVGRGGMGDVYEAEDTVRERIVALKLMSETLSSDPVFRTRMQREARTAGRLQEPHVVPIHDFGEIDGQLYVD  112 (309)
T ss_dssp             -CCEEEEEEEEECSSSEEEEEEETTTTEEEEEEECGGGGGGSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEE
T ss_pred             eccEEEEEEEcCCCCeeEEEEEEcCCCeEEEEEecCcccccCHHHHHHHHHHHHHHhhcCCCCeeEEEEEEeeCCeEEEE
Confidence            368999999999999999999975 68899999886542   33457789999999999999999999999999999999


Q ss_pred             EecCCCCC----------CCHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceee
Q 047066          179 NEFVKLPT----------ISWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLS  235 (256)
Q Consensus       179 ~e~~~~~~----------l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~  235 (256)
                      |||+++++          +++.....++.+++             +||||+|||++.++.+||+|||++...........
T Consensus       113 ~e~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~  192 (309)
T 2h34_A          113 MRLINGVDLAAMLRRQGPLAPPRAVAIVRQIGSALDAAHAAGATHRDVKPENILVSADDFAYLVDFGIASATTDEKLTQL  192 (309)
T ss_dssp             EECCCCEEHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTSCEEECSCCC------------
T ss_pred             EEecCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCcCCcCCCChHHEEEcCCCCEEEecCccCccccccccccc
Confidence            99998844          55666666676665             59999999999999999999999987654433333


Q ss_pred             eeeeecccc----cccccCCCCCCC
Q 047066          236 TMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       236 ~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      ....||+.|    .+.++.++.++|
T Consensus       193 ~~~~~~~~y~aPE~~~~~~~~~~~D  217 (309)
T 2h34_A          193 GNTVGTLYYMAPERFSESHATYRAD  217 (309)
T ss_dssp             ----CCGGGCCGGGTCC----CCCH
T ss_pred             cccCCCcCccCHHHHcCCCCCchHh
Confidence            445699999    555677787876

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*

Probab=99.89  E-value=7.7e-23  Score=175.11  Aligned_cols=149  Identities=23%  Similarity=0.332  Sum_probs=121.5

Q ss_pred             cCCCcccceeeeeCceEEEEEEE-CCCcEEEEEEecccC---hhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEE
Q 047066          103 TNNYAYDRMIGRGGYGTVFLGSL-SDNKAIAIKKSRIVY---QSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLV  178 (256)
Q Consensus       103 ~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv  178 (256)
                      .+.|...+.||+|+||.||+|.. .+++.||+|.+....   ....+.+.+|+.++++++||||+++++++...+..++|
T Consensus        53 ~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv  132 (348)
T 1u5q_A           53 EKLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLV  132 (348)
T ss_dssp             HHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEESCSSCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEE
T ss_pred             hhheeeeeEEccCCCEEEEEEEEccCCeEEEEEEEccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCeEEEE
Confidence            34588889999999999999996 478999999886432   33446789999999999999999999999999999999


Q ss_pred             EecCCC----------CCCCHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceee
Q 047066          179 NEFVKL----------PTISWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLS  235 (256)
Q Consensus       179 ~e~~~~----------~~l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~  235 (256)
                      |||+.+          +.+++.....++.+++             +||||+|||++.++.+||+|||+++.....     
T Consensus       133 ~e~~~g~l~~~l~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~-----  207 (348)
T 1u5q_A          133 MEYCLGSASDLLEVHKKPLQEVEIAAVTHGALQGLAYLHSHNMIHRDVKAGNILLSEPGLVKLGDFGSASIMAPA-----  207 (348)
T ss_dssp             EECCSEEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCSGGGEEEETTTEEEECCCTTCBSSSSB-----
T ss_pred             EecCCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeeeCCCCHHHEEECCCCCEEEeeccCceecCCC-----
Confidence            999975          3456666667776665             699999999999999999999999876432     


Q ss_pred             eeeeecccc----cc---cccCCCCCCC
Q 047066          236 TMVQGTLGY----YL---HTSQGTLNKE  256 (256)
Q Consensus       236 ~~~~Gt~~y----~~---~~~~~t~ksD  256 (256)
                      ....||+.|    .+   ..+.++.++|
T Consensus       208 ~~~~gt~~y~aPE~~~~~~~~~~~~~~D  235 (348)
T 1u5q_A          208 NSFVGTPYWMAPEVILAMDEGQYDGKVD  235 (348)
T ss_dssp             CCCCSCGGGCCHHHHHTTSSCCBCTHHH
T ss_pred             CcccCCcceeCHhhhccccCCCCCcHHH
Confidence            234699999    22   3567777766

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}

Probab=99.89  E-value=5.1e-23  Score=177.82  Aligned_cols=146  Identities=21%  Similarity=0.263  Sum_probs=114.0

Q ss_pred             cceeeeeCceEEEEEEEC-CCcEEEEEEecccChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEecCCCCCC
Q 047066          109 DRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEFVKLPTI  187 (256)
Q Consensus       109 ~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~~~~l  187 (256)
                      .+.||+|+||.||+|... ++..||+|.++.......+.+.+|+.+++.++||||+++++++...+..++||||+++++|
T Consensus        94 ~~~lG~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~E~~~~~~L  173 (373)
T 2x4f_A           94 TEILGGGRFGQVHKCEETATGLKLAAKIIKTRGMKDKEEVKNEISVMNQLDHANLIQLYDAFESKNDIVLVMEYVDGGEL  173 (373)
T ss_dssp             EEECC-----CEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEECCTTCEE
T ss_pred             ceEEecCcCEEEEEEEEcCCCcEEEEEEEcccccccHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEeCCCCCcH
Confidence            568999999999999975 6899999998876656667899999999999999999999999999999999999998765


Q ss_pred             -----------CHHHHHHHHHHHH-------------hccCCCcEEE--cCCCcEEEEecCCceecCCCCceeeeeeeec
Q 047066          188 -----------SWEVRIRIAAETA-------------EDIKSINILL--DDNYTTKVCDFGASKLVPIDETQLSTMVQGT  241 (256)
Q Consensus       188 -----------~~~~~~~~~~~i~-------------rdlk~~NiLi--~~~~~~ki~DFGla~~~~~~~~~~~~~~~Gt  241 (256)
                                 ++.....++.|++             +||||+|||+  +.++.+||+|||+++.+.....  .....||
T Consensus       174 ~~~l~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~~~kl~DFG~a~~~~~~~~--~~~~~gt  251 (373)
T 2x4f_A          174 FDRIIDESYNLTELDTILFMKQICEGIRHMHQMYILHLDLKPENILCVNRDAKQIKIIDFGLARRYKPREK--LKVNFGT  251 (373)
T ss_dssp             HHHHHHTGGGCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEEEETTTTEEEECCCSSCEECCTTCB--CCCCCSS
T ss_pred             HHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCcccccCCHHHEEEecCCCCcEEEEeCCCceecCCccc--cccccCC
Confidence                       4455555666655             6999999999  5678999999999998754432  2334699


Q ss_pred             ccc----cccccCCCCCCC
Q 047066          242 LGY----YLHTSQGTLNKE  256 (256)
Q Consensus       242 ~~y----~~~~~~~t~ksD  256 (256)
                      +.|    .+.++.++.++|
T Consensus       252 ~~y~aPE~~~~~~~~~~~D  270 (373)
T 2x4f_A          252 PEFLAPEVVNYDFVSFPTD  270 (373)
T ss_dssp             CTTCCHHHHTTCBCCHHHH
T ss_pred             CcEeChhhccCCCCCcHHh
Confidence            999    455566666655

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*

Probab=99.89  E-value=9.8e-23  Score=170.92  Aligned_cols=166  Identities=31%  Similarity=0.481  Sum_probs=131.2

Q ss_pred             CccccChHHHHhhcCCCccc------ceeeeeCceEEEEEEECCCcEEEEEEeccc----ChhHHHHHHHHHHHHHhCCC
Q 047066           90 TAKIFTAGELKIATNNYAYD------RMIGRGGYGTVFLGSLSDNKAIAIKKSRIV----YQSQIEQCINKVVVLSQINH  159 (256)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~------~~lg~G~~g~V~~~~~~~~~~vavK~~~~~----~~~~~~~~~~E~~~l~~l~h  159 (256)
                      ....++..++...+++|...      +.||+|+||.||+|.. +++.+|+|.+...    .....+.+.+|+.+++.++|
T Consensus        11 ~~~~~~~~~l~~~~~~f~~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h   89 (307)
T 2nru_A           11 RFHSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV-NNTTVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQH   89 (307)
T ss_dssp             CCEECCHHHHHHHTTTTCCSBTTTTCCEEEECSSEEEEEEES-SSCEEEEEEECCCTTSCTTTHHHHHHHHHHHHHHCCC
T ss_pred             CCCcccHHHHHHHHcccccccccccCCccccCCCeEEEEEEE-CCceEEEEEEecccCcchHHHHHHHHHHHHHHHhcCC
Confidence            44567778888887777766      8999999999999987 6889999987542    23445789999999999999


Q ss_pred             CcccceeeEEEECCEEEEEEecCCCCC-------------CCHHHHHHHHHHHH-------------hccCCCcEEEcCC
Q 047066          160 RNVVGLLGCCLETEVPLLVNEFVKLPT-------------ISWEVRIRIAAETA-------------EDIKSINILLDDN  213 (256)
Q Consensus       160 ~niv~l~~~~~~~~~~~lv~e~~~~~~-------------l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~  213 (256)
                      |||+++++++...+..+++|||+++++             +++.....++.+++             +||||+||+++++
T Consensus        90 ~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~i~H~dlkp~Nili~~~  169 (307)
T 2nru_A           90 ENLVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDGTPPLSWHMRCKIAQGAANGINFLHENHHIHRDIKSANILLDEA  169 (307)
T ss_dssp             TTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHTGGGCCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECTT
T ss_pred             CCeEEEEEEEecCCceEEEEEecCCCcHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhcCCeecCCCCHHHEEEcCC
Confidence            999999999999999999999998755             45666666666665             5999999999999


Q ss_pred             CcEEEEecCCceecCCCCce-eeeeeeecccc---cccccCCCCCCC
Q 047066          214 YTTKVCDFGASKLVPIDETQ-LSTMVQGTLGY---YLHTSQGTLNKE  256 (256)
Q Consensus       214 ~~~ki~DFGla~~~~~~~~~-~~~~~~Gt~~y---~~~~~~~t~ksD  256 (256)
                      +.+||+|||+++........ ......||+.|   +...+.++.++|
T Consensus       170 ~~~kl~Dfg~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~D  216 (307)
T 2nru_A          170 FTAKISDFGLARASEKFAQTVMTSRIVGTTAYMAPEALRGEITPKSD  216 (307)
T ss_dssp             CCEEECCCTTCEECCSCSSCEECSSCCSCGGGCCHHHHTTEECTHHH
T ss_pred             CcEEEeecccccccccccccccccccCCCcCcCChHHhcCCCCccch
Confidence            99999999999876543322 22334689999   444455666655

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A*

Probab=99.89  E-value=2.6e-23  Score=172.42  Aligned_cols=158  Identities=22%  Similarity=0.311  Sum_probs=110.9

Q ss_pred             HHHhhcCCCcccceeeeeCceEEEEEEECC----CcEEEEEEecccC-hhHHHHHHHHHHHHHhCCCCcccceeeEEEEC
Q 047066           98 ELKIATNNYAYDRMIGRGGYGTVFLGSLSD----NKAIAIKKSRIVY-QSQIEQCINKVVVLSQINHRNVVGLLGCCLET  172 (256)
Q Consensus        98 ~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~----~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~  172 (256)
                      ++++..++|++.+.||+|+||.||+|....    +..||+|...... ....+.+.+|+.+++.++||||+++++++. .
T Consensus         9 ~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~-~   87 (281)
T 1mp8_A            9 DYEIQRERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVIT-E   87 (281)
T ss_dssp             CCBCCGGGEEEEEEEEECSSSEEEEEEECCC--CCEEEEEEECTTTTSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEC-S
T ss_pred             ceEEehHHeEEEeEeeecCCeeEEEEEEecCCCCceEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCccceEEEEEc-c
Confidence            345566789999999999999999998642    4579999876543 445578999999999999999999999984 5


Q ss_pred             CEEEEEEecCCCCC-----------CCHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecC
Q 047066          173 EVPLLVNEFVKLPT-----------ISWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVP  228 (256)
Q Consensus       173 ~~~~lv~e~~~~~~-----------l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~  228 (256)
                      +..++||||+++++           +++.....++.+++             +||||+|||++.++.+||+|||+++...
T Consensus        88 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~  167 (281)
T 1mp8_A           88 NPVWIIMELCTLGELRSFLQVRKYSLDLASLILYAYQLSTALAYLESKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYME  167 (281)
T ss_dssp             SSCEEEEECCTTEEHHHHHHHTTTTSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEEETTEEEECC--------
T ss_pred             CccEEEEecCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCeecccccHHHEEECCCCCEEECccccccccC
Confidence            66899999998744           55666666666655             6999999999999999999999998875


Q ss_pred             CCCceeeeeeeecccc----cccccCCCCCCC
Q 047066          229 IDETQLSTMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       229 ~~~~~~~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      ...........||+.|    .+.+..++.++|
T Consensus       168 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~D  199 (281)
T 1mp8_A          168 DSTYYKASKGKLPIKWMAPESINFRRFTSASD  199 (281)
T ss_dssp             -----------CCGGGCCHHHHHHCCCSHHHH
T ss_pred             cccccccccCCCcccccChhhcccCCCCCccC
Confidence            5433333344577788    444555665554

>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II}

Probab=99.89  E-value=7e-23  Score=177.66  Aligned_cols=154  Identities=22%  Similarity=0.322  Sum_probs=111.4

Q ss_pred             cCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEeccc--ChhHHHHHHHHHHHHHhCC-CCcccceeeEEEECC--EEE
Q 047066          103 TNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIV--YQSQIEQCINKVVVLSQIN-HRNVVGLLGCCLETE--VPL  176 (256)
Q Consensus       103 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~-h~niv~l~~~~~~~~--~~~  176 (256)
                      .++|++.+.||+|+||.||+|... +++.||+|++...  .......+.+|+.++..+. ||||+++++++...+  ..+
T Consensus         8 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~l~~~~~~~~~~~~~   87 (388)
T 3oz6_A            8 LRKYELVKKLGKGAYGIVWKSIDRRTGEVVAVKKIFDAFQNSTDAQRTFREIMILTELSGHENIVNLLNVLRADNDRDVY   87 (388)
T ss_dssp             HTTEEEEEC-------CEEEEEETTTCCEEEEEEECC--CCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECTTSSCEE
T ss_pred             cCceEEEEEeeeCCCeEEEEEEECCCCCEEEEEEecccccChHHHHHHHHHHHHHHhccCCCCCCeeeeEEecCCCCEEE
Confidence            468999999999999999999975 6899999988543  3445577889999999996 999999999998644  689


Q ss_pred             EEEecCCC--------CCCCHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCC-----
Q 047066          177 LVNEFVKL--------PTISWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPID-----  230 (256)
Q Consensus       177 lv~e~~~~--------~~l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~-----  230 (256)
                      +||||+++        +.++......++.|++             |||||+|||++.++.+||+|||+|+.+...     
T Consensus        88 lv~e~~~~~L~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~~~~  167 (388)
T 3oz6_A           88 LVFDYMETDLHAVIRANILEPVHKQYVVYQLIKVIKYLHSGGLLHRDMKPSNILLNAECHVKVADFGLSRSFVNIRRVTN  167 (388)
T ss_dssp             EEEECCSEEHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCTTCEESSSCCCCCC
T ss_pred             EEecccCcCHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhCCEEeCCCCHHHeEEcCCCCEEecCCcccccccccccccc
Confidence            99999985        3455555555665554             699999999999999999999999876431     


Q ss_pred             ---------------Cceeeeeeeecccc----ccc-ccCCCCCCC
Q 047066          231 ---------------ETQLSTMVQGTLGY----YLH-TSQGTLNKE  256 (256)
Q Consensus       231 ---------------~~~~~~~~~Gt~~y----~~~-~~~~t~ksD  256 (256)
                                     .....+..+||++|    .+. ...++.++|
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~D  213 (388)
T 3oz6_A          168 NIPLSINENTENFDDDQPILTDYVATRWYRAPEILLGSTKYTKGID  213 (388)
T ss_dssp             CGGGCCC---------------CCCGGGGCCHHHHTTCCCCCTHHH
T ss_pred             cccccccccccccccccccccCCcccCCcCCHHHhcCCCCCCChhh
Confidence                           11122345799999    333 356777765

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*

Probab=99.89  E-value=1.8e-23  Score=177.42  Aligned_cols=161  Identities=19%  Similarity=0.363  Sum_probs=126.4

Q ss_pred             hHHHHhhcCCCcccceeeeeCceEEEEEEECC-C-----cEEEEEEecccC-hhHHHHHHHHHHHHHhC-CCCcccceee
Q 047066           96 AGELKIATNNYAYDRMIGRGGYGTVFLGSLSD-N-----KAIAIKKSRIVY-QSQIEQCINKVVVLSQI-NHRNVVGLLG  167 (256)
Q Consensus        96 ~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~-~-----~~vavK~~~~~~-~~~~~~~~~E~~~l~~l-~h~niv~l~~  167 (256)
                      ...+++..++|++.+.||+|+||.||+|.... +     ..||+|.+.... ....+.+.+|+.+++.+ +||||+++++
T Consensus        38 ~~~~~~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~  117 (333)
T 2i1m_A           38 NEKWEFPRNNLQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSELKIMSHLGQHENIVNLLG  117 (333)
T ss_dssp             CGGGBCCTTSEEEEEEEEECSSEEEEEEEETTCSSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEE
T ss_pred             cccccCCHHHceeeeEeccCCCcceEEEEecCCCcccchhHHHHHhcccccChHHHHHHHHHHHHHHhhcCCCCeeeEEE
Confidence            34577788999999999999999999999642 2     479999886543 44567899999999999 8999999999


Q ss_pred             EEEECCEEEEEEecCCCCCC------------------------CHHHHHHHHHHHH-------------hccCCCcEEE
Q 047066          168 CCLETEVPLLVNEFVKLPTI------------------------SWEVRIRIAAETA-------------EDIKSINILL  210 (256)
Q Consensus       168 ~~~~~~~~~lv~e~~~~~~l------------------------~~~~~~~~~~~i~-------------rdlk~~NiLi  210 (256)
                      ++...+..+++|||+++++|                        ++.....++.+++             +||||+|||+
T Consensus       118 ~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dlkp~NIl~  197 (333)
T 2i1m_A          118 ACTHGGPVLVITEYCCYGDLLNFLRRKSRVLETDPAFAIANSTASTRDLLHFSSQVAQGMAFLASKNCIHRDVAARNVLL  197 (333)
T ss_dssp             EECSSSSCEEEEECCTTEEHHHHHHHHHHHHSCC-------CCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGCEE
T ss_pred             EEecCCceEEEEecCCCCcHHHHHHHhcccccccccccccccccCHHHHHHHHHHHHHHHHHHhcCCcccCCcccceEEE
Confidence            99999999999999988665                        3444455555554             6999999999


Q ss_pred             cCCCcEEEEecCCceecCCCCce-eeeeeeecccc----cccccCCCCCCC
Q 047066          211 DDNYTTKVCDFGASKLVPIDETQ-LSTMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       211 ~~~~~~ki~DFGla~~~~~~~~~-~~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      +.++.+||+|||+++........ ......||+.|    .+.++.++.++|
T Consensus       198 ~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~D  248 (333)
T 2i1m_A          198 TNGHVAKIGDFGLARDIMNDSNYIVKGNARLPVKWMAPESIFDCVYTVQSD  248 (333)
T ss_dssp             EGGGEEEBCCCGGGCCGGGCTTSEECSSCEECGGGSCHHHHHHCCCCHHHH
T ss_pred             CCCCeEEECccccccccccccceeecCCCCCCccccCHHHhccCCCChHHH
Confidence            99999999999999876543322 22344578888    444556666554

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ...

Probab=99.89  E-value=1.8e-23  Score=173.70  Aligned_cols=159  Identities=23%  Similarity=0.389  Sum_probs=129.1

Q ss_pred             HHHHhhcCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEE
Q 047066           97 GELKIATNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVP  175 (256)
Q Consensus        97 ~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~  175 (256)
                      +++++..++|++.+.||+|+||.||+|.++ ++..||+|.+.... ...+.+.+|+.+++.++||||+++++++...+..
T Consensus         6 ~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~   84 (288)
T 3kfa_A            6 DKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDT-MEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPF   84 (288)
T ss_dssp             CTTBCCGGGEEEEEESGGGTTCSEEEEEEGGGTEEEEEEEECSCS-THHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSE
T ss_pred             hcccccccceeEEeecCCCCceeEEEeEecCCCEEEEEEecCcCH-HHHHHHHHHHHHHHhCCCCCEeeEEEEEccCCCE
Confidence            356667789999999999999999999976 48899999987543 3457899999999999999999999999999999


Q ss_pred             EEEEecCCCCC------------CCHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCC
Q 047066          176 LLVNEFVKLPT------------ISWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPID  230 (256)
Q Consensus       176 ~lv~e~~~~~~------------l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~  230 (256)
                      +++|||+++++            +++.....++.+++             +||||+||+++.++.+||+|||++.....+
T Consensus        85 ~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~i~H~dikp~Nil~~~~~~~~l~Dfg~~~~~~~~  164 (288)
T 3kfa_A           85 YIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGD  164 (288)
T ss_dssp             EEEEECCTTEEHHHHHHHCCTTTSCHHHHHHHHHHHHHHHHHHHHHTCCCSCCSGGGEEECGGGCEEECCCCGGGTSCSS
T ss_pred             EEEEEcCCCCcHHHHHHhcccCCccHhHHHHHHHHHHHHHHHHHHCCccCCCCCcceEEEcCCCCEEEccCccceeccCC
Confidence            99999998744            45555566666654             699999999999999999999999987655


Q ss_pred             Cceeeeeeeecccc----cccccCCCCCCC
Q 047066          231 ETQLSTMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       231 ~~~~~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      .........||+.|    .+.++.++.++|
T Consensus       165 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~D  194 (288)
T 3kfa_A          165 TYTAHAGAKFPIKWTAPESLAYNKFSIKSD  194 (288)
T ss_dssp             SSEEETTEEECGGGCCHHHHHHCCCCHHHH
T ss_pred             ccccccCCccccCcCChhhhccCCCCchhh
Confidence            54444556688888    445556666554

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7

Probab=99.89  E-value=1.6e-23  Score=178.52  Aligned_cols=160  Identities=21%  Similarity=0.375  Sum_probs=125.1

Q ss_pred             HHHHhhcCCCcccceeeeeCceEEEEEEEC------CCcEEEEEEecccC-hhHHHHHHHHHHHHHhC-CCCcccceeeE
Q 047066           97 GELKIATNNYAYDRMIGRGGYGTVFLGSLS------DNKAIAIKKSRIVY-QSQIEQCINKVVVLSQI-NHRNVVGLLGC  168 (256)
Q Consensus        97 ~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~------~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l-~h~niv~l~~~  168 (256)
                      .+++++.++|.+.+.||+|+||.||+|...      ++..||+|.+.... ....+.+.+|+.++..+ +||||++++++
T Consensus        38 ~~~~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~  117 (344)
T 1rjb_A           38 LKWEFPRENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSHENIVNLLGA  117 (344)
T ss_dssp             GGGBCCGGGEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEE
T ss_pred             cCcccCHHHceeeeeecCCCCceeEEeeeeccccCCcceEEEEEecccccCHHHHHHHHHHHHHHHhhcCCCCeeeEEEE
Confidence            357778899999999999999999999852      35689999986543 33457799999999999 89999999999


Q ss_pred             EEECCEEEEEEecCCCCCC---------------------------------CHHHHHHHHHHHH-------------hc
Q 047066          169 CLETEVPLLVNEFVKLPTI---------------------------------SWEVRIRIAAETA-------------ED  202 (256)
Q Consensus       169 ~~~~~~~~lv~e~~~~~~l---------------------------------~~~~~~~~~~~i~-------------rd  202 (256)
                      +...+..+++|||+++++|                                 ++.....++.+++             +|
T Consensus       118 ~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~D  197 (344)
T 1rjb_A          118 CTLSGPIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLEFKSCVHRD  197 (344)
T ss_dssp             ECSSSSCEEEEECCTTCBHHHHHHTTTTCC---------------------CCHHHHHHHHHHHHHHHHHHHHTTEEETT
T ss_pred             EeeCCccEEEEecCCCCcHHHHHhhccccccccccchhhhcccccccccccCCHHHHHHHHHHHHHHHHHHHhCCcccCC
Confidence            9999999999999988554                                 4445556666655             69


Q ss_pred             cCCCcEEEcCCCcEEEEecCCceecCCCCce-eeeeeeecccc----cccccCCCCCCC
Q 047066          203 IKSINILLDDNYTTKVCDFGASKLVPIDETQ-LSTMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       203 lk~~NiLi~~~~~~ki~DFGla~~~~~~~~~-~~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      |||+|||++.++.+||+|||+++........ ......||+.|    .+.++.++.++|
T Consensus       198 ikp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~D  256 (344)
T 1rjb_A          198 LAARNVLVTHGKVVKICDFGLARDIMSDSNYVVRGNARLPVKWMAPESLFEGIYTIKSD  256 (344)
T ss_dssp             CSGGGEEEETTTEEEECCCGGGSCGGGCTTSEEETTEEECGGGCCHHHHHHCCCCHHHH
T ss_pred             CChhhEEEcCCCcEEeCCCccCcccccCccceeccCccCccCccCHHHhccCCCChhHh
Confidence            9999999999999999999999877544332 23345688888    445566666655

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=99.89  E-value=6.6e-24  Score=174.41  Aligned_cols=157  Identities=27%  Similarity=0.385  Sum_probs=123.1

Q ss_pred             HHhhcCCCcccceeeeeCceEEEEEEECCCcEEEEEEecccChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEE
Q 047066           99 LKIATNNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLV  178 (256)
Q Consensus        99 ~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv  178 (256)
                      |.+..++|++.+.||+|+||.||++...++..||+|.+...... .+.+.+|+.+++.++||||+++++++...+..+++
T Consensus         3 ~~i~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~~-~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv   81 (267)
T 3t9t_A            3 WVIDPSELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAMS-EEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLV   81 (267)
T ss_dssp             CBCCGGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTTBC-HHHHHHHHHHHHTCCCTTBCCEEEEECSSSSCEEE
T ss_pred             eEEchhheeeeeEecCCCceeEEEEEecCCCeEEEEEccccCCC-HHHHHHHHHHHHhCCCCCEeeEEEEEccCCCeEEE
Confidence            45566789999999999999999999988889999998754432 36789999999999999999999999999999999


Q ss_pred             EecCCCCCC-----------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCcee
Q 047066          179 NEFVKLPTI-----------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQL  234 (256)
Q Consensus       179 ~e~~~~~~l-----------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~  234 (256)
                      |||+++++|           ++.....++.+++             +||||+||+++.++.+||+|||+++.........
T Consensus        82 ~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~Nili~~~~~~kl~dfg~~~~~~~~~~~~  161 (267)
T 3t9t_A           82 TEFMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLEEACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTS  161 (267)
T ss_dssp             ECCCTTCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHTTCCCSSCCGGGEEECGGGCEEECCTTGGGGBCCHHHHS
T ss_pred             EeCCCCCcHHHHHhhCcccCCHHHHHHHHHHHHHHHHHHHhCCcccCCCchheEEECCCCCEEEcccccccccccccccc
Confidence            999988654           5555566666655             5999999999999999999999998764322222


Q ss_pred             eeeeeecccc----cccccCCCCCCC
Q 047066          235 STMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       235 ~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      .....||+.|    .+.+..++.++|
T Consensus       162 ~~~~~~~~~y~aPE~~~~~~~~~~~D  187 (267)
T 3t9t_A          162 STGTKFPVKWASPEVFSFSRYSSKSD  187 (267)
T ss_dssp             TTSTTCCGGGCCHHHHHHCCCCHHHH
T ss_pred             cccccccccccChhhhcCCCccchhc
Confidence            2223466677    334455555554

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus}

Probab=99.89  E-value=3.4e-23  Score=174.98  Aligned_cols=159  Identities=21%  Similarity=0.388  Sum_probs=108.5

Q ss_pred             HHHhhcCCCcccceeeeeCceEEEEEEECC-C---cEEEEEEeccc--ChhHHHHHHHHHHHHHhCCCCcccceeeEEEE
Q 047066           98 ELKIATNNYAYDRMIGRGGYGTVFLGSLSD-N---KAIAIKKSRIV--YQSQIEQCINKVVVLSQINHRNVVGLLGCCLE  171 (256)
Q Consensus        98 ~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~-~---~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~  171 (256)
                      ++.+..++|++.+.||+|+||.||+|.... +   ..||+|.+...  .....+.+.+|+.+++.++||||+++++++..
T Consensus        17 ~~~i~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~   96 (323)
T 3qup_A           17 DVLIPEQQFTLGRMLGKGEFGSVREAQLKQEDGSFVKVAVKMLKADIIASSDIEEFLREAACMKEFDHPHVAKLVGVSLR   96 (323)
T ss_dssp             TTBCC---CEEEEEEEEETTEEEEEEEC-------CEEEEEEC------CHHHHHHHHHHHHHTTCCCTTBCCCCEEEEC
T ss_pred             hcccChhHeEEeceecccCCeEEEEEEEcccCCcceeEEEEEecccccCHHHHHHHHHHHHHHHHCCCCceehhhceeec
Confidence            445667889999999999999999998653 3   27999988654  34556789999999999999999999999987


Q ss_pred             CCEE------EEEEecCCCCC----------------CCHHHHHHHHHHHH-------------hccCCCcEEEcCCCcE
Q 047066          172 TEVP------LLVNEFVKLPT----------------ISWEVRIRIAAETA-------------EDIKSINILLDDNYTT  216 (256)
Q Consensus       172 ~~~~------~lv~e~~~~~~----------------l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~  216 (256)
                      .+..      +++|||+++++                +++.....++.|++             +||||+|||+++++.+
T Consensus        97 ~~~~~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH~~~ivH~Dikp~NIli~~~~~~  176 (323)
T 3qup_A           97 SRAKGRLPIPMVILPFMKHGDLHAFLLASRIGENPFNLPLQTLVRFMVDIACGMEYLSSRNFIHRDLAARNCMLAEDMTV  176 (323)
T ss_dssp             C-------CEEEEEECCTTCBHHHHHHHHHC---CCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECTTSCE
T ss_pred             cccccCCCccEEEEEeccCCcHHHHHHhhhccccccccCHHHHHHHHHHHHHHHHHHHcCCcccCCCCcceEEEcCCCCE
Confidence            6654      99999999865                45555666666665             6999999999999999


Q ss_pred             EEEecCCceecCCCCcee-eeeeeecccc----cccccCCCCCCC
Q 047066          217 KVCDFGASKLVPIDETQL-STMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       217 ki~DFGla~~~~~~~~~~-~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      ||+|||+|+......... .....||+.|    .+.+..++.++|
T Consensus       177 kl~Dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~D  221 (323)
T 3qup_A          177 CVADFGLSRKIYSGDYYRQGCASKLPVKWLALESLADNLYTVHSD  221 (323)
T ss_dssp             EECCCCC-----------------CCGGGCCHHHHHHCCCCHHHH
T ss_pred             EEeeccccccccccccccccccccCcccccCchhhcCCCCCCccc
Confidence            999999998765433221 2234467778    445555666655

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*

Probab=99.89  E-value=4e-23  Score=173.53  Aligned_cols=162  Identities=22%  Similarity=0.385  Sum_probs=128.8

Q ss_pred             ChHHHHhhcCCCcccceeeeeCceEEEEEEE------CCCcEEEEEEecccC-hhHHHHHHHHHHHHHhC-CCCccccee
Q 047066           95 TAGELKIATNNYAYDRMIGRGGYGTVFLGSL------SDNKAIAIKKSRIVY-QSQIEQCINKVVVLSQI-NHRNVVGLL  166 (256)
Q Consensus        95 ~~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~------~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l-~h~niv~l~  166 (256)
                      ...++++..++|++.+.||+|+||.||+|..      .++..||+|.+.... ....+.+.+|+.+++.+ +||||++++
T Consensus        14 ~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~   93 (313)
T 1t46_A           14 YDHKWEFPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLL   93 (313)
T ss_dssp             CCGGGBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEE
T ss_pred             CccccccChhhhhHHHhhCccCCcceEEEEEeeccccchhhhhHHHhcCcchhHHHHHHHHHHHHHHhhcccCCCeeeEE
Confidence            3455777888999999999999999999985      246789999987544 34557899999999999 999999999


Q ss_pred             eEEEECCEEEEEEecCCCCC----------------------------CCHHHHHHHHHHHH-------------hccCC
Q 047066          167 GCCLETEVPLLVNEFVKLPT----------------------------ISWEVRIRIAAETA-------------EDIKS  205 (256)
Q Consensus       167 ~~~~~~~~~~lv~e~~~~~~----------------------------l~~~~~~~~~~~i~-------------rdlk~  205 (256)
                      +++...+..+++|||+++++                            +++.....++.+++             +||||
T Consensus        94 ~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp  173 (313)
T 1t46_A           94 GACTIGGPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLASKNCIHRDLAA  173 (313)
T ss_dssp             EEECSSSSCEEEEECCTTEEHHHHHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSG
T ss_pred             EEEecCCCcEEEEecCCCCCHHHHHHhcccccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHCCeecCCCcc
Confidence            99999999999999998743                            45555666666655             59999


Q ss_pred             CcEEEcCCCcEEEEecCCceecCCCCcee-eeeeeecccc----cccccCCCCCCC
Q 047066          206 INILLDDNYTTKVCDFGASKLVPIDETQL-STMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       206 ~NiLi~~~~~~ki~DFGla~~~~~~~~~~-~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      +||+++.++.+||+|||+++......... .....||+.|    .+.+..++.++|
T Consensus       174 ~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~D  229 (313)
T 1t46_A          174 RNILLTHGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESD  229 (313)
T ss_dssp             GGEEEETTTEEEECCCGGGSCTTSCTTSEECSSSEECGGGCCHHHHHHCCCCHHHH
T ss_pred             ceEEEcCCCCEEEccccccccccccccceeccCCCCcceeeChHHhcCCCCChHHH
Confidence            99999999999999999998876543322 2334588888    445566666655

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens}

Probab=99.89  E-value=1.1e-22  Score=172.50  Aligned_cols=151  Identities=21%  Similarity=0.219  Sum_probs=122.4

Q ss_pred             CCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccCh------hHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEE
Q 047066          104 NNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVYQ------SQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPL  176 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~------~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~  176 (256)
                      +.|.+.+.||+|+||.||+|..+ ++..||+|.+.....      ...+.+.+|+.+++.++||||+++++++...+..+
T Consensus        11 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~   90 (326)
T 2y0a_A           11 DYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYENKTDVI   90 (326)
T ss_dssp             HHEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEBCCSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEE
T ss_pred             cceEeceEEeeCCCeEEEEEEECCCCcEEEEEEEEccccccccchhhHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEE
Confidence            56889999999999999999976 688999998764321      13577899999999999999999999999999999


Q ss_pred             EEEecCCCCCC----------CHHHHHHHHHHHH-------------hccCCCcEEEcCCC----cEEEEecCCceecCC
Q 047066          177 LVNEFVKLPTI----------SWEVRIRIAAETA-------------EDIKSINILLDDNY----TTKVCDFGASKLVPI  229 (256)
Q Consensus       177 lv~e~~~~~~l----------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~----~~ki~DFGla~~~~~  229 (256)
                      +||||+++++|          ++.....++.|++             +||||+|||++.++    .+||+|||+++....
T Consensus        91 lv~e~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~al~~lH~~~ivH~Dlkp~NIll~~~~~~~~~~kl~Dfg~a~~~~~  170 (326)
T 2y0a_A           91 LILELVAGGELFDFLAEKESLTEEEATEFLKQILNGVYYLHSLQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDF  170 (326)
T ss_dssp             EEEECCCSCBHHHHHTTSSCCBHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESCSSSSSCCEEECCCTTCEECCT
T ss_pred             EEEEcCCCCCHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHCCeEcCCCCHHHEEEecCCCCCCCEEEEECCCCeECCC
Confidence            99999988654          5566666666655             69999999998887    899999999998754


Q ss_pred             CCceeeeeeeecccc----cccccCCCCCCC
Q 047066          230 DETQLSTMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       230 ~~~~~~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      ...  .....||+.|    .+.+..++.++|
T Consensus       171 ~~~--~~~~~gt~~y~aPE~~~~~~~~~~~D  199 (326)
T 2y0a_A          171 GNE--FKNIFGTPEFVAPEIVNYEPLGLEAD  199 (326)
T ss_dssp             TSC--CCCCCSCTTTCCHHHHTTCCCCTHHH
T ss_pred             CCc--cccccCCcCcCCceeecCCCCCcHHH
Confidence            322  2334699999    555566777665

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens}

Probab=99.89  E-value=1.3e-22  Score=171.29  Aligned_cols=152  Identities=23%  Similarity=0.320  Sum_probs=122.2

Q ss_pred             cCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC-hhHHHHHHHHHHHHHhCCCCcccceeeEEEECC--EEEEE
Q 047066          103 TNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY-QSQIEQCINKVVVLSQINHRNVVGLLGCCLETE--VPLLV  178 (256)
Q Consensus       103 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~--~~~lv  178 (256)
                      .++|.+.+.||+|+||.||+|... +++.||+|.+.... ....+.+.+|+.+++.++||||+++++++...+  ..++|
T Consensus         8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv   87 (319)
T 4euu_A            8 NHLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHKVLI   87 (319)
T ss_dssp             SEEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHHHHCCCTTBCCEEEEEECTTTCCEEEE
T ss_pred             CCCEEEEEEecCCCCeEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHHHhcCCCCcceEEEEeecCCCceEEEE
Confidence            367999999999999999999976 58899999986533 334577889999999999999999999998755  78999


Q ss_pred             EecCCCCC-------------CCHHHHHHHHHHHH-------------hccCCCcEEE----cCCCcEEEEecCCceecC
Q 047066          179 NEFVKLPT-------------ISWEVRIRIAAETA-------------EDIKSINILL----DDNYTTKVCDFGASKLVP  228 (256)
Q Consensus       179 ~e~~~~~~-------------l~~~~~~~~~~~i~-------------rdlk~~NiLi----~~~~~~ki~DFGla~~~~  228 (256)
                      |||+++++             +++.....++.|++             +||||+|||+    +.++.+||+|||+|+...
T Consensus        88 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~ivH~Dlkp~NIll~~~~~~~~~~kL~Dfg~a~~~~  167 (319)
T 4euu_A           88 MEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLRENGIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAARELE  167 (319)
T ss_dssp             EECCTTCBHHHHHHSGGGTTCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEEECTTSCEEEEECCCTTCEECC
T ss_pred             EeCCCCCCHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHHCCEecCCCCHHHEEEeccCCCCceEEEccCCCceecC
Confidence            99998755             56666667777765             6999999999    788899999999999875


Q ss_pred             CCCceeeeeeeecccc----ccc--------ccCCCCCCC
Q 047066          229 IDETQLSTMVQGTLGY----YLH--------TSQGTLNKE  256 (256)
Q Consensus       229 ~~~~~~~~~~~Gt~~y----~~~--------~~~~t~ksD  256 (256)
                      .....  ....||+.|    .+.        +..++.++|
T Consensus       168 ~~~~~--~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~D  205 (319)
T 4euu_A          168 DDEQF--VSLYGTEEYLHPDMYERAVLRKDHQKKYGATVD  205 (319)
T ss_dssp             TTCCB--CCCCSCGGGCCHHHHHHHTSCCCCCCCBCTTHH
T ss_pred             CCCce--eecccCCCccCHHHhhhccccccccCCCCcHHH
Confidence            54332  334699999    222        467777776

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A*

Probab=99.89  E-value=2.9e-23  Score=174.77  Aligned_cols=154  Identities=22%  Similarity=0.334  Sum_probs=113.6

Q ss_pred             cCCCcccceeeeeCceEEEEEEE-CCCcEEEEEEeccc---ChhHHHHHHHHHHHHHhCCCCcccceeeEEEECC----E
Q 047066          103 TNNYAYDRMIGRGGYGTVFLGSL-SDNKAIAIKKSRIV---YQSQIEQCINKVVVLSQINHRNVVGLLGCCLETE----V  174 (256)
Q Consensus       103 ~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~----~  174 (256)
                      .++|++.+.||+|+||.||++.. .+++.||+|.+...   .......+.+|+.+++.++||||+++++++....    .
T Consensus        11 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~~   90 (311)
T 3ork_A           11 SDRYELGEILGFGGMSEVHLARDLRDHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPAGPL   90 (311)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECTTTTTSHHHHHHHHHHHTTCCCCCCTTBCCEEEEEEEEETTEEE
T ss_pred             cCcEEEEEEEccCCCEEEEEEEECCCCceEEEEEeCccccCCHHHHHHHHHHHHHHHcCCCCCcceEEEeeeccCCCCcc
Confidence            46899999999999999999997 47899999998654   2344567899999999999999999999987643    3


Q ss_pred             EEEEEecCCCCC----------CCHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCC
Q 047066          175 PLLVNEFVKLPT----------ISWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDE  231 (256)
Q Consensus       175 ~~lv~e~~~~~~----------l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~  231 (256)
                      .++||||+++++          +++.....++.|++             +||||+|||++.++.+||+|||+++.+....
T Consensus        91 ~~lv~e~~~g~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~a~~~~~~~  170 (311)
T 3ork_A           91 PYIVMEYVDGVTLRDIVHTEGPMTPKRAIEVIADACQALNFSHQNGIIHRDVKPANIMISATNAVKVMDFGIARAIADSG  170 (311)
T ss_dssp             EEEEEECCCEEEHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEEETTSCEEECCCSCC-------
T ss_pred             cEEEEecCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCCCcCCCCHHHEEEcCCCCEEEeeccCcccccccc
Confidence            599999998755          45555666666655             6999999999999999999999998765432


Q ss_pred             ce--eeeeeeecccc----cccccCCCCCCC
Q 047066          232 TQ--LSTMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       232 ~~--~~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      ..  ......||+.|    .+.+..++.++|
T Consensus       171 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~D  201 (311)
T 3ork_A          171 NSVTQTAAVIGTAQYLSPEQARGDSVDARSD  201 (311)
T ss_dssp             -----------CCTTCCHHHHHTCCCCHHHH
T ss_pred             cccccccccCcCcccCCHHHhcCCCCCchHh
Confidence            22  22345699999    455566666655

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}

Probab=99.88  E-value=4.3e-23  Score=176.69  Aligned_cols=152  Identities=23%  Similarity=0.260  Sum_probs=108.4

Q ss_pred             hhcCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEE
Q 047066          101 IATNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVN  179 (256)
Q Consensus       101 ~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~  179 (256)
                      ...+.|++.+.||+|+||.||+|... +++.||+|.+....  ..+.+.+|+.++++++||||+++++++...+..+++|
T Consensus        50 ~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vavK~~~~~~--~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~  127 (349)
T 2w4o_A           50 ALSDFFEVESELGRGATSIVYRCKQKGTQKPYALKVLKKTV--DKKIVRTEIGVLLRLSHPNIIKLKEIFETPTEISLVL  127 (349)
T ss_dssp             CGGGTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEC------------CHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             cccCcEEEeeEEeeCCCEEEEEEEECCCCcEEEEEEeccch--hHHHHHHHHHHHHhCCCCCCcceeeeEecCCeEEEEE
Confidence            44577999999999999999999986 57899999886532  3356788999999999999999999999999999999


Q ss_pred             ecCCCCCC----------CHHHHHHHHHHHH-------------hccCCCcEEEcC---CCcEEEEecCCceecCCCCce
Q 047066          180 EFVKLPTI----------SWEVRIRIAAETA-------------EDIKSINILLDD---NYTTKVCDFGASKLVPIDETQ  233 (256)
Q Consensus       180 e~~~~~~l----------~~~~~~~~~~~i~-------------rdlk~~NiLi~~---~~~~ki~DFGla~~~~~~~~~  233 (256)
                      ||+++++|          ++.....++.|++             +||||+|||++.   ++.+||+|||+++......  
T Consensus       128 e~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~~L~~LH~~~ivH~Dikp~NIll~~~~~~~~~kl~Dfg~a~~~~~~~--  205 (349)
T 2w4o_A          128 ELVTGGELFDRIVEKGYYSERDAADAVKQILEAVAYLHENGIVHRDLKPENLLYATPAPDAPLKIADFGLSKIVEHQV--  205 (349)
T ss_dssp             CCCCSCBHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEESSSSTTCCEEECCCC-----------
T ss_pred             EeCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeEecCCCcccEEEecCCCCCCEEEccCccccccCccc--
Confidence            99988664          5666666666665             699999999975   8899999999998764322  


Q ss_pred             eeeeeeecccc----cccccCCCCCCC
Q 047066          234 LSTMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       234 ~~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      ......||+.|    .+.+..++.++|
T Consensus       206 ~~~~~~gt~~y~aPE~~~~~~~~~~~D  232 (349)
T 2w4o_A          206 LMKTVCGTPGYCAPEILRGCAYGPEVD  232 (349)
T ss_dssp             -------CGGGSCHHHHTTCCCCTHHH
T ss_pred             ccccccCCCCccCHHHhcCCCCCcccc
Confidence            22345699999    555666777766

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...

Probab=99.88  E-value=5.3e-23  Score=174.85  Aligned_cols=160  Identities=16%  Similarity=0.329  Sum_probs=124.1

Q ss_pred             HHHHhhcCCCcccceeeeeCceEEEEEEEC--------CCcEEEEEEecccC-hhHHHHHHHHHHHHHhC-CCCccccee
Q 047066           97 GELKIATNNYAYDRMIGRGGYGTVFLGSLS--------DNKAIAIKKSRIVY-QSQIEQCINKVVVLSQI-NHRNVVGLL  166 (256)
Q Consensus        97 ~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~--------~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l-~h~niv~l~  166 (256)
                      ..+.+..++|++.+.||+|+||.||+|...        ++..||+|.+.... ....+.+.+|+.+++.+ +||||++++
T Consensus        28 ~~~~~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~  107 (334)
T 2pvf_A           28 PKWEFPRDKLTLGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLL  107 (334)
T ss_dssp             TTTBCCGGGEEEEEEEEECSSCEEEEEEETTCSTTCC---CEEEEEECCTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEE
T ss_pred             ccccCCHhHeEEeeEEeecCceeEEEeEeccccccccccceEEEEeeeccCCcHHHHHHHHHHHHHHHHhhcCCCEeeEE
Confidence            345667789999999999999999999863        46789999986543 45567899999999999 899999999


Q ss_pred             eEEEECCEEEEEEecCCCCCC--------------------------CHHHHHHHHHHHH-------------hccCCCc
Q 047066          167 GCCLETEVPLLVNEFVKLPTI--------------------------SWEVRIRIAAETA-------------EDIKSIN  207 (256)
Q Consensus       167 ~~~~~~~~~~lv~e~~~~~~l--------------------------~~~~~~~~~~~i~-------------rdlk~~N  207 (256)
                      +++...+..++||||+++++|                          ++.....++.+++             +||||+|
T Consensus       108 ~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~N  187 (334)
T 2pvf_A          108 GACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQKCIHRDLAARN  187 (334)
T ss_dssp             EEECSSSCCEEEEECCTTCBHHHHHHTTSCTTCCSCC--------CCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGG
T ss_pred             EEEccCCceEEEEECCCCCcHHHHHHHhccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCccce
Confidence            999999999999999988554                          4455566666665             5999999


Q ss_pred             EEEcCCCcEEEEecCCceecCCCCcee-eeeeeecccc----cccccCCCCCCC
Q 047066          208 ILLDDNYTTKVCDFGASKLVPIDETQL-STMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       208 iLi~~~~~~ki~DFGla~~~~~~~~~~-~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      ||++.++.+||+|||+++......... .....||+.|    .+.+..++.++|
T Consensus       188 Ill~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~D  241 (334)
T 2pvf_A          188 VLVTENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSD  241 (334)
T ss_dssp             EEECTTCCEEECCCTTCEECTTTSSEECCSCCCCCGGGCCHHHHHHCEECHHHH
T ss_pred             EEEcCCCCEEEccccccccccccccccccCCCCcccceeChHHhcCCCcChHHH
Confidence            999999999999999999876443322 2233577778    344455555554

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*

Probab=99.88  E-value=1.8e-23  Score=176.97  Aligned_cols=145  Identities=27%  Similarity=0.338  Sum_probs=114.4

Q ss_pred             HHHhhcCCCcccceeeeeCceEEEEEEECCCcEEEEEEecccChhHHHHHHHHHHHHHhCCCCcccceeeEEEECC----
Q 047066           98 ELKIATNNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLETE----  173 (256)
Q Consensus        98 ~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~----  173 (256)
                      ++.+..++|++.+.||+|+||.||+|... ++.||+|.+..... .......|+.++++++||||+++++++....    
T Consensus        18 n~~~~~~~y~~~~~lg~G~~g~Vy~~~~~-~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~   95 (322)
T 3soc_A           18 NLYFQSMPLQLLEVKARGRFGCVWKAQLL-NEYVAVKIFPIQDK-QSWQNEYEVYSLPGMKHENILQFIGAEKRGTSVDV   95 (322)
T ss_dssp             CEEETTEEEEEEEEEECSTTCEEEEEEET-TEEEEEEEECGGGH-HHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSE
T ss_pred             ccccchhhchhhheecccCceEEEEEEEC-CCEEEEEEeecCch-HHHHHHHHHHHHhcCCCCCchhhcceeccCCCCCc
Confidence            34455678999999999999999999984 78999999865432 3345667899999999999999999998744    


Q ss_pred             EEEEEEecCCCCCC---------CHHHHHHHHHHHH-----------------------hccCCCcEEEcCCCcEEEEec
Q 047066          174 VPLLVNEFVKLPTI---------SWEVRIRIAAETA-----------------------EDIKSINILLDDNYTTKVCDF  221 (256)
Q Consensus       174 ~~~lv~e~~~~~~l---------~~~~~~~~~~~i~-----------------------rdlk~~NiLi~~~~~~ki~DF  221 (256)
                      ..++||||+++++|         ++.....++.|++                       +||||+|||++.++.+||+||
T Consensus        96 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~i~~qi~~al~~LH~~~~~l~~~~~~~ivH~Dlkp~Nill~~~~~~kL~DF  175 (322)
T 3soc_A           96 DLWLITAFHEKGSLSDFLKANVVSWNELCHIAETMARGLAYLHEDIPGLKDGHKPAISHRDIKSKNVLLKNNLTACIADF  175 (322)
T ss_dssp             EEEEEEECCTTCBHHHHHHHCCBCHHHHHHHHHHHHHHHHHHTCCEEEETTEEECEEECSCCSGGGEEECTTCCEEECCC
T ss_pred             eEEEEEecCCCCCHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhccccccccCCCEEeCCCChHhEEECCCCeEEEccC
Confidence            47999999999775         4555555555544                       599999999999999999999


Q ss_pred             CCceecCCCCcee-eeeeeecccc
Q 047066          222 GASKLVPIDETQL-STMVQGTLGY  244 (256)
Q Consensus       222 Gla~~~~~~~~~~-~~~~~Gt~~y  244 (256)
                      |+|+.+....... .....||+.|
T Consensus       176 g~a~~~~~~~~~~~~~~~~gt~~y  199 (322)
T 3soc_A          176 GLALKFEAGKSAGDTHGQVGTRRY  199 (322)
T ss_dssp             TTCEEECTTSCCCCCTTCCCCGGG
T ss_pred             CcccccccccCccccccCccCccc
Confidence            9998875443321 2234699999

>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}

Probab=99.88  E-value=3.3e-22  Score=171.46  Aligned_cols=160  Identities=23%  Similarity=0.249  Sum_probs=127.8

Q ss_pred             ccccChHHHHhhcCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccChhHHHHHHHHHHHHHhCC-----CCcccc
Q 047066           91 AKIFTAGELKIATNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVYQSQIEQCINKVVVLSQIN-----HRNVVG  164 (256)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-----h~niv~  164 (256)
                      ...+...+.....++|.+.+.||+|+||.||+|... +++.||+|.+... ....+.+..|+.+++.++     ||||++
T Consensus        22 ~~~~~~~~g~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~-~~~~~~~~~e~~~l~~l~~~~~~h~~iv~  100 (360)
T 3llt_A           22 IVHFSWKKGMLLNNAFLVIRKMGDGTFGRVLLCQHIDNKKYYAVKVVRNI-KKYTRSAKIEADILKKIQNDDINNNNIVK  100 (360)
T ss_dssp             GGSCCCCTTCEETTTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECSC-HHHHHHHHHHHHHHHHTCCCSTTGGGBCC
T ss_pred             ceeeeeecceEecCEEEEEEEEcccCCeEEEEEEECCCCeEEEEEEeccc-hhhhhhhHHHHHHHHHhcccCCCCCCeec
Confidence            334455555566789999999999999999999974 6889999988643 334466788999999986     999999


Q ss_pred             eeeEEEECCEEEEEEecCCCCC------------CCHHHHHHHHHHHH-------------hccCCCcEEEcC-------
Q 047066          165 LLGCCLETEVPLLVNEFVKLPT------------ISWEVRIRIAAETA-------------EDIKSINILLDD-------  212 (256)
Q Consensus       165 l~~~~~~~~~~~lv~e~~~~~~------------l~~~~~~~~~~~i~-------------rdlk~~NiLi~~-------  212 (256)
                      +++++...+..++||||+ +++            ++......++.|++             |||||+|||++.       
T Consensus       101 ~~~~~~~~~~~~lv~e~~-~~~L~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~~~~~~~  179 (360)
T 3llt_A          101 YHGKFMYYDHMCLIFEPL-GPSLYEIITRNNYNGFHIEDIKLYCIEILKALNYLRKMSLTHTDLKPENILLDDPYFEKSL  179 (360)
T ss_dssp             EEEEEEETTEEEEEECCC-CCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEESCTTCCEEE
T ss_pred             ccceeeECCeeEEEEcCC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHCCeeeCCCCcccEEEccccccccc
Confidence            999999999999999999 433            56666666666665             699999999975       


Q ss_pred             ------------------CCcEEEEecCCceecCCCCceeeeeeeecccc----cccccCCCCCCC
Q 047066          213 ------------------NYTTKVCDFGASKLVPIDETQLSTMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       213 ------------------~~~~ki~DFGla~~~~~~~~~~~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                                        ++.+||+|||+|+......    ....||+.|    .+.+..++.++|
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~kl~DFG~a~~~~~~~----~~~~gt~~y~aPE~~~~~~~~~~~D  241 (360)
T 3llt_A          180 ITVRRVTDGKKIQIYRTKSTGIKLIDFGCATFKSDYH----GSIINTRQYRAPEVILNLGWDVSSD  241 (360)
T ss_dssp             EEEECTTTCCEEEEEEESCCCEEECCCTTCEETTSCC----CSCCSCGGGCCHHHHTTCCCCTTHH
T ss_pred             cchhcccccccccccccCCCCEEEEeccCceecCCCC----cCccCcccccCcHHHcCCCCCCccc
Confidence                              7899999999998754332    234699999    566777888876

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*

Probab=99.88  E-value=3.4e-22  Score=165.72  Aligned_cols=152  Identities=20%  Similarity=0.234  Sum_probs=122.6

Q ss_pred             cCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEeccc--ChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEE
Q 047066          103 TNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIV--YQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVN  179 (256)
Q Consensus       103 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~  179 (256)
                      .++|++.+.||+|+||.||+|..+ +++.||+|.+...  .....+.+.+|+.++++++||||+++++++...+..+++|
T Consensus         5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~   84 (284)
T 3kk8_A            5 SDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLVF   84 (284)
T ss_dssp             TTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             hhhhhhhhhhcCcCCeEEEEEEEcCCCceEEEEEeecccCCHHHHHHHHHHHHHHHHcCCCCcCeEEEEEEcCCEEEEEE
Confidence            468999999999999999999975 5889999988543  3445577899999999999999999999999999999999


Q ss_pred             ecCCCCCC----------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCc---EEEEecCCceecCCCCce
Q 047066          180 EFVKLPTI----------SWEVRIRIAAETA-------------EDIKSINILLDDNYT---TKVCDFGASKLVPIDETQ  233 (256)
Q Consensus       180 e~~~~~~l----------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~---~ki~DFGla~~~~~~~~~  233 (256)
                      ||+++++|          ++.....++.+++             +||||+||+++.++.   +||+|||++........ 
T Consensus        85 e~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dikp~Nil~~~~~~~~~~kl~Dfg~~~~~~~~~~-  163 (284)
T 3kk8_A           85 DLVTGGELFEDIVAREFYSEADASHCIQQILESIAYCHSNGIVHRNLKPENLLLASKAKGAAVKLADFGLAIEVNDSEA-  163 (284)
T ss_dssp             CCCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEESSSSTTCCEEECCCTTCEECCSSCB-
T ss_pred             ecCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCcCcCCCCHHHEEEecCCCCCcEEEeeceeeEEcccCcc-
Confidence            99998765          4555556666655             599999999976654   99999999987654332 


Q ss_pred             eeeeeeecccc----cccccCCCCCCC
Q 047066          234 LSTMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       234 ~~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                       .....||+.|    .+.+..++.++|
T Consensus       164 -~~~~~~~~~y~aPE~~~~~~~~~~~D  189 (284)
T 3kk8_A          164 -WHGFAGTPGYLSPEVLKKDPYSKPVD  189 (284)
T ss_dssp             -CCCSCSCGGGCCHHHHTTCCBCTHHH
T ss_pred             -ccCCCCCcCCcCchhhcCCCCCcccc
Confidence             2334699999    555666777665

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A*

Probab=99.88  E-value=4.3e-22  Score=166.06  Aligned_cols=153  Identities=21%  Similarity=0.329  Sum_probs=123.1

Q ss_pred             cCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEeccc---ChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEE
Q 047066          103 TNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIV---YQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLV  178 (256)
Q Consensus       103 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv  178 (256)
                      .++|.+.+.||+|+||.||++... +++.+|+|.+...   .....+.+.+|+.+++.++||||+++++++...+..+++
T Consensus        14 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv   93 (294)
T 2rku_A           14 RRRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDNDFVFVV   93 (294)
T ss_dssp             TEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             ccceEEEEEEeecCCEEEEEEEECCCCceEEEEEechhhccCHHHHHHHHHHHHHHHhCCCCCEeeeeeeeccCCEEEEE
Confidence            467999999999999999999976 5788999987543   244557789999999999999999999999999999999


Q ss_pred             EecCCCCC----------CCHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceee
Q 047066          179 NEFVKLPT----------ISWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLS  235 (256)
Q Consensus       179 ~e~~~~~~----------l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~  235 (256)
                      |||+++++          +++.....++.|++             +||||+||+++.++.+||+|||+++........ .
T Consensus        94 ~e~~~~~~L~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~-~  172 (294)
T 2rku_A           94 LELCRRRSLLELHKRRKALTEPEARYYLRQIVLGCQYLHRNRVIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYDGER-K  172 (294)
T ss_dssp             EECCTTCBHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCTTCEECCSTTCC-B
T ss_pred             EecCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCChHhEEEcCCCCEEEEeccCceecccCccc-c
Confidence            99999855          45566666666665             599999999999999999999999886543322 2


Q ss_pred             eeeeecccc----cccccCCCCCCC
Q 047066          236 TMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       236 ~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      ....||+.|    .+.+..++.++|
T Consensus       173 ~~~~~~~~y~aPE~~~~~~~~~~~D  197 (294)
T 2rku_A          173 KVLCGTPNYIAPEVLSKKGHSFEVD  197 (294)
T ss_dssp             CCCCSCCSSCCHHHHTTSCBCTHHH
T ss_pred             ccccCCCCcCCcchhccCCCCchhh
Confidence            334589888    444555666655

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus}

Probab=99.88  E-value=1.3e-22  Score=180.31  Aligned_cols=140  Identities=21%  Similarity=0.310  Sum_probs=117.8

Q ss_pred             cCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC---hhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEE
Q 047066          103 TNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY---QSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLV  178 (256)
Q Consensus       103 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv  178 (256)
                      .++|.+.+.||+|+||.||+|... +++.||+|.+....   ....+.+.+|+.+++.++||||+++++++...+..++|
T Consensus        15 ~~~Y~l~~~LG~G~fg~V~~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~~~~~~~~~~~lv   94 (476)
T 2y94_A           15 IGHYILGDTLGVGTFGKVKVGKHELTGHKVAVKILNRQKIRSLDVVGKIRREIQNLKLFRHPHIIKLYQVISTPSDIFMV   94 (476)
T ss_dssp             ETTEEEEEEEECCSSSCEEEEEETTTCCEEEEEEEEHHHHHHTTTHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             ecCEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEE
Confidence            367999999999999999999976 78999999886432   22346789999999999999999999999999999999


Q ss_pred             EecCCCC----------CCCHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceee
Q 047066          179 NEFVKLP----------TISWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLS  235 (256)
Q Consensus       179 ~e~~~~~----------~l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~  235 (256)
                      |||++++          .+++.....++.|++             |||||+|||++.++.+||+|||+++.......  .
T Consensus        95 ~E~~~gg~L~~~l~~~~~l~~~~~~~i~~qi~~aL~~LH~~givHrDLkp~NIll~~~~~vkL~DFG~a~~~~~~~~--~  172 (476)
T 2y94_A           95 MEYVSGGELFDYICKNGRLDEKESRRLFQQILSGVDYCHRHMVVHRDLKPENVLLDAHMNAKIADFGLSNMMSDGEF--L  172 (476)
T ss_dssp             EECCSSEEHHHHTTSSSSCCHHHHHHHHHHHHHHHHHHHTTTEECSCCSGGGEEECTTCCEEECCCSSCEECCTTCC--B
T ss_pred             EeCCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCCCcccccHHHEEEecCCCeEEEeccchhhcccccc--c
Confidence            9999774          456777777777766             69999999999999999999999998754322  2


Q ss_pred             eeeeecccc
Q 047066          236 TMVQGTLGY  244 (256)
Q Consensus       236 ~~~~Gt~~y  244 (256)
                      ...+||+.|
T Consensus       173 ~~~~gt~~y  181 (476)
T 2y94_A          173 RTSCGSPNY  181 (476)
T ss_dssp             CCCCSCSTT
T ss_pred             cccCCCcCe
Confidence            345699999

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*

Probab=99.88  E-value=3.8e-22  Score=169.71  Aligned_cols=154  Identities=21%  Similarity=0.329  Sum_probs=123.7

Q ss_pred             hcCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEeccc---ChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEE
Q 047066          102 ATNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIV---YQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLL  177 (256)
Q Consensus       102 ~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~l  177 (256)
                      ..++|.+.+.||+|+||.||++... +++.+|+|.+...   .....+.+.+|+.+++.++||||+++++++.+.+..++
T Consensus        39 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~l  118 (335)
T 2owb_A           39 SRRRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDNDFVFV  118 (335)
T ss_dssp             TTEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEE
T ss_pred             cCCceEEEEEEeeCCCeEEEEEEECCCCCEEEEEEechhhhcCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCeEEE
Confidence            3467999999999999999999976 5788999987543   34456788999999999999999999999999999999


Q ss_pred             EEecCCCCC----------CCHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCcee
Q 047066          178 VNEFVKLPT----------ISWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQL  234 (256)
Q Consensus       178 v~e~~~~~~----------l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~  234 (256)
                      +|||+++++          +++.....++.|++             +||||+|||++.++.+||+|||+++........ 
T Consensus       119 v~e~~~~~~L~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~-  197 (335)
T 2owb_A          119 VLELCRRRSLLELHKRRKALTEPEARYYLRQIVLGCQYLHRNRVIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYDGER-  197 (335)
T ss_dssp             EECCCTTCBHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECTTCCEEECCCTTCEECCSTTCC-
T ss_pred             EEecCCCCCHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCCEecCCCchhEEEcCCCCEEEeeccCceecccCccc-
Confidence            999999865          45555666666655             599999999999999999999999987543322 


Q ss_pred             eeeeeecccc----cccccCCCCCCC
Q 047066          235 STMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       235 ~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      .....||+.|    .+.+..++.++|
T Consensus       198 ~~~~~gt~~y~aPE~~~~~~~~~~~D  223 (335)
T 2owb_A          198 KKVLCGTPNYIAPEVLSKKGHSFEVD  223 (335)
T ss_dssp             BCCCCSCCSSCCHHHHHTSCBCTHHH
T ss_pred             ccccCCCccccCHHHhccCCCCchhh
Confidence            2334689988    444555666555

>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ...

Probab=99.88  E-value=3.4e-22  Score=172.45  Aligned_cols=152  Identities=22%  Similarity=0.275  Sum_probs=114.0

Q ss_pred             cCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEeccc--ChhHHHHHHHHHHHHHhCCCCcccceeeEEEECC------
Q 047066          103 TNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIV--YQSQIEQCINKVVVLSQINHRNVVGLLGCCLETE------  173 (256)
Q Consensus       103 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~------  173 (256)
                      .++|++.+.||+|+||.||+|... +++.||+|.+...  .....+.+.+|+.+++.++||||+++++++...+      
T Consensus        24 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~  103 (371)
T 2xrw_A           24 LKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEFQ  103 (371)
T ss_dssp             ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSCCSTTTCC
T ss_pred             hhheeEeeeeEecCCEEEEEEEECCCCceEEEEEeccccCChHHHHHHHHHHHHHHhcCCCCccceEEeecccccccccc
Confidence            368999999999999999999975 6889999988643  3445577899999999999999999999998654      


Q ss_pred             EEEEEEecCCCC-------CCCHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCce
Q 047066          174 VPLLVNEFVKLP-------TISWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQ  233 (256)
Q Consensus       174 ~~~lv~e~~~~~-------~l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~  233 (256)
                      ..++||||++++       .+++.....++.|++             +||||+|||++.++.+||+|||+|+......  
T Consensus       104 ~~~lv~e~~~~~l~~~~~~~~~~~~~~~i~~qi~~al~~lH~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~a~~~~~~~--  181 (371)
T 2xrw_A          104 DVYIVMELMDANLCQVIQMELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSF--  181 (371)
T ss_dssp             EEEEEEECCSEEHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTSCEEECCCCC----------
T ss_pred             ceEEEEEcCCCCHHHHHhhccCHHHHHHHHHHHHHHHHHHHHCCeecccCCHHHEEEcCCCCEEEEEeeccccccccc--
Confidence            789999999863       356666666666655             6999999999999999999999998764322  


Q ss_pred             eeeeeeecccc----cccccCCCCCCC
Q 047066          234 LSTMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       234 ~~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      ......||+.|    .+.+..++.++|
T Consensus       182 ~~~~~~gt~~y~aPE~~~~~~~~~~~D  208 (371)
T 2xrw_A          182 MMTPYVVTRYYRAPEVILGMGYKENVD  208 (371)
T ss_dssp             --------CTTCCHHHHTTCCCCTTHH
T ss_pred             ccCCceecCCccCHHHhcCCCCCchHh
Confidence            22345699999    555667787776

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A*

Probab=99.88  E-value=5.5e-23  Score=171.97  Aligned_cols=154  Identities=20%  Similarity=0.327  Sum_probs=117.2

Q ss_pred             cCCCcccceeeeeCceEEEEEEE-----CCCcEEEEEEecccC-hhHHHHHHHHHHHHHhCCCCcccceeeEEEEC--CE
Q 047066          103 TNNYAYDRMIGRGGYGTVFLGSL-----SDNKAIAIKKSRIVY-QSQIEQCINKVVVLSQINHRNVVGLLGCCLET--EV  174 (256)
Q Consensus       103 ~~~~~~~~~lg~G~~g~V~~~~~-----~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~--~~  174 (256)
                      .+.|++.+.||+|+||.||+|.+     .+++.||+|.+.... ....+.+.+|+.+++.++||||+++++++...  +.
T Consensus        20 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~   99 (302)
T 4e5w_A           20 KRFLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKYKGICTEDGGNG   99 (302)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEECTTSSSCSEEEEEEEEC-----CCHHHHHHHHHHHHTCCCTTBCCEEEEEEC---CC
T ss_pred             hhhhhhhhccCCCCceEEEEEEEccccCccCeEEEEEEecccccchhHHHHHHHHHHHHhCCCCCeeeeeeEEecCCCce
Confidence            45689999999999999999984     368899999986543 34457789999999999999999999999875  66


Q ss_pred             EEEEEecCCCCCC-----------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCC
Q 047066          175 PLLVNEFVKLPTI-----------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPID  230 (256)
Q Consensus       175 ~~lv~e~~~~~~l-----------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~  230 (256)
                      .+++|||+++++|           ++.....++.+++             +||||+|||++.++.+||+|||+++....+
T Consensus       100 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~  179 (302)
T 4e5w_A          100 IKLIMEFLPSGSLKEYLPKNKNKINLKQQLKYAVQICKGMDYLGSRQYVHRDLAARNVLVESEHQVKIGDFGLTKAIETD  179 (302)
T ss_dssp             EEEEEECCTTCBHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEEETTEEEECCCTTCEECCTT
T ss_pred             EEEEEEeCCCCcHHHHHHhccccCCHHHHHHHHHHHHHHHHHhhcCCcccCCCchheEEEcCCCCEEECcccccccccCC
Confidence            8999999988665           4455556666655             599999999999999999999999987654


Q ss_pred             Ccee--eeeeeecccc----cccccCCCCCCC
Q 047066          231 ETQL--STMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       231 ~~~~--~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      ....  .....||+.|    .+.+..++.++|
T Consensus       180 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~D  211 (302)
T 4e5w_A          180 KEYYTVKDDRDSPVFWYAPECLMQSKFYIASD  211 (302)
T ss_dssp             CCEEECCCCTTCCGGGCCHHHHHHCEEEHHHH
T ss_pred             CcceeccCCCCCCccccCCeeecCCCCCcchh
Confidence            4321  2234577777    344444554443

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A*

Probab=99.88  E-value=6e-22  Score=165.87  Aligned_cols=153  Identities=24%  Similarity=0.319  Sum_probs=124.8

Q ss_pred             cCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC-hhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEe
Q 047066          103 TNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY-QSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNE  180 (256)
Q Consensus       103 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e  180 (256)
                      .+.|++.+.||+|+||.||+|... +++.||+|.+.... ....+.+.+|+.+++.++||||+++++++...+..+++||
T Consensus        21 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e  100 (303)
T 3a7i_A           21 EELFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLKDTKLWIIME  100 (303)
T ss_dssp             GGTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEETTTCSTTHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             HHHHHHhhhhcccCCeEEEEEEECCCCcEEEEEEecccccHHHHHHHHHHHHHHHhCCCCCEeEEEEEEecCCeEEEEEE
Confidence            467899999999999999999865 68899999886543 4456789999999999999999999999999999999999


Q ss_pred             cCCCCC---------CCHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceeeeee
Q 047066          181 FVKLPT---------ISWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMV  238 (256)
Q Consensus       181 ~~~~~~---------l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~~~  238 (256)
                      |+++++         +++.....++.+++             +||+|+||+++.++.+||+|||++......... ....
T Consensus       101 ~~~~~~L~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~kl~Dfg~~~~~~~~~~~-~~~~  179 (303)
T 3a7i_A          101 YLGGGSALDLLEPGPLDETQIATILREILKGLDYLHSEKKIHRDIKAANVLLSEHGEVKLADFGVAGQLTDTQIK-RNTF  179 (303)
T ss_dssp             CCTTEEHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEECBTTBCC-BCCC
T ss_pred             eCCCCcHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCCccCCCChheEEECCCCCEEEeecccceecCccccc-cCcc
Confidence            998744         56666777777665             599999999999999999999999887543222 2334


Q ss_pred             eecccc----cccccCCCCCCC
Q 047066          239 QGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       239 ~Gt~~y----~~~~~~~t~ksD  256 (256)
                      .||+.|    .+.+..++.++|
T Consensus       180 ~~~~~y~aPE~~~~~~~~~~~D  201 (303)
T 3a7i_A          180 VGTPFWMAPEVIKQSAYDSKAD  201 (303)
T ss_dssp             CSCGGGCCHHHHTTCCBCTHHH
T ss_pred             CCCcCccCHHHHhcCCCCchhh
Confidence            689988    455566666655

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*

Probab=99.88  E-value=1.2e-22  Score=172.09  Aligned_cols=154  Identities=19%  Similarity=0.295  Sum_probs=122.1

Q ss_pred             cCCCcccceeeeeCceEEEEEEE-----CCCcEEEEEEecccChhHHHHHHHHHHHHHhCCCCcccceeeEEE--ECCEE
Q 047066          103 TNNYAYDRMIGRGGYGTVFLGSL-----SDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCL--ETEVP  175 (256)
Q Consensus       103 ~~~~~~~~~lg~G~~g~V~~~~~-----~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~--~~~~~  175 (256)
                      .++|++.+.||+|+||.||+|.+     .++..||+|.+........+.+.+|+.+++.++||||+++++++.  ..+..
T Consensus        22 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~  101 (327)
T 3lxl_A           22 ERHLKYISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGPDQQRDFQREIQILKALHSDFIVKYRGVSYGPGRQSL  101 (327)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEECTTSSSCSEEEEEEEESSCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSSCEE
T ss_pred             hhhhhhhhhccCCCCeEEEEEEeccCCCCcceEEEEEEeccCCHHHHHHHHHHHHHHHhcCCCceeEEEEEEecCCCceE
Confidence            36789999999999999999984     357899999998777677788999999999999999999999987  45679


Q ss_pred             EEEEecCCCCCC-----------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCC
Q 047066          176 LLVNEFVKLPTI-----------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDE  231 (256)
Q Consensus       176 ~lv~e~~~~~~l-----------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~  231 (256)
                      ++||||+++++|           ++.....++.+++             +||||+|||++.++.+||+|||+++......
T Consensus       102 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~~~~~~~~~  181 (327)
T 3lxl_A          102 RLVMEYLPSGCLRDFLQRHRARLDASRLLLYSSQICKGMEYLGSRRCVHRDLAARNILVESEAHVKIADFGLAKLLPLDK  181 (327)
T ss_dssp             EEEEECCTTCBHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEEETTEEEECCGGGCEECCTTC
T ss_pred             EEEEeecCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhCCccCCCCChhhEEECCCCCEEEcccccceecccCC
Confidence            999999988664           5555566666665             5999999999999999999999999875443


Q ss_pred             cee--eeeeeecccc----cccccCCCCCCC
Q 047066          232 TQL--STMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       232 ~~~--~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      ...  .....||+.|    .+.+..++.++|
T Consensus       182 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~D  212 (327)
T 3lxl_A          182 DYYVVREPGQSPIFWYAPESLSDNIFSRQSD  212 (327)
T ss_dssp             SEEECSSCCCSCGGGSCHHHHHHCEEEHHHH
T ss_pred             ccceeeccCCccccccCHHHhccCCCChHHh
Confidence            322  1234577777    344444555444

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=99.88  E-value=8e-23  Score=188.97  Aligned_cols=155  Identities=21%  Similarity=0.275  Sum_probs=124.6

Q ss_pred             hhcCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEeccc---ChhHHHHHHHHHHHHHhC-CCCcccceeeEEEECCEE
Q 047066          101 IATNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIV---YQSQIEQCINKVVVLSQI-NHRNVVGLLGCCLETEVP  175 (256)
Q Consensus       101 ~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~  175 (256)
                      ...++|++.+.||+|+||+||+|..+ +++.||+|.++..   .....+.+..|..++..+ +||||+++++++.+.+.+
T Consensus       338 ~~~~~f~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~l~~~~~~~~~~  417 (674)
T 3pfq_A          338 MKLTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRL  417 (674)
T ss_dssp             --CTTEEEEEESSBTTTBCEEEEEESSSCCEEEEEEEEHHHHHHTTTTHHHHHHHHHHTCTTCCTTBCCEEEECBCSSEE
T ss_pred             ccccceEEEEEEccCCCEEEEEEEECCCCcEEEEEEEeccccccHHHHHHHHHHHHHHHhccCCCeEEEEEEEEEeCCEE
Confidence            44578999999999999999999976 5788999988642   233446788999999988 799999999999999999


Q ss_pred             EEEEecCCCCCC----------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCc
Q 047066          176 LLVNEFVKLPTI----------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDET  232 (256)
Q Consensus       176 ~lv~e~~~~~~l----------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~  232 (256)
                      ++||||+++|+|          ++.....++.+++             |||||+|||++.++.+||+|||+|+....+..
T Consensus       418 ~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~gIiHrDLKp~NILl~~~g~ikL~DFGla~~~~~~~~  497 (674)
T 3pfq_A          418 YFVMEYVNGGDLMYHIQQVGRFKEPHAVFYAAEIAIGLFFLQSKGIIYRDLKLDNVMLDSEGHIKIADFGMCKENIWDGV  497 (674)
T ss_dssp             EEEEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTSEECCCCCSTTEEECSSSCEEECCCTTCEECCCTTC
T ss_pred             EEEEeCcCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeEeccCChhhEEEcCCCcEEEeecceeeccccCCc
Confidence            999999998665          5555566666655             69999999999999999999999997543322


Q ss_pred             eeeeeeeecccc----cccccCCCCCCC
Q 047066          233 QLSTMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       233 ~~~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                       .....+||+.|    .+.+..++.++|
T Consensus       498 -~~~~~~GT~~Y~APE~l~~~~~~~~~D  524 (674)
T 3pfq_A          498 -TTKTFCGTPDYIAPEIIAYQPYGKSVD  524 (674)
T ss_dssp             -CBCCCCSCSSSCCHHHHTCCCBSTHHH
T ss_pred             -ccccccCCCcccCHhhhcCCCCCccce
Confidence             23456799999    566677777765

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens}

Probab=99.88  E-value=4.3e-22  Score=164.70  Aligned_cols=152  Identities=19%  Similarity=0.300  Sum_probs=109.8

Q ss_pred             CCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC---hhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEE
Q 047066          104 NNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY---QSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVN  179 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~  179 (256)
                      ++|++.+.||+|+||.||+|... +++.||+|.+....   ....+.+.+|+.+++.++||||+++++++...+..+++|
T Consensus        11 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~   90 (278)
T 3cok_A           11 EDFKVGNLLGKGSFAGVYRAESIHTGLEVAIKMIDKKAMYKAGMVQRVQNEVKIHCQLKHPSILELYNYFEDSNYVYLVL   90 (278)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTBCCTTBCCEEEEEECSSEEEEEE
T ss_pred             ccceeeeeecCCCceEEEEEEEccCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHhCCCCCeEeEEEEEccCCeEEEEE
Confidence            57899999999999999999974 78999999886432   223467899999999999999999999999999999999


Q ss_pred             ecCCCC-----------CCCHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceee
Q 047066          180 EFVKLP-----------TISWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLS  235 (256)
Q Consensus       180 e~~~~~-----------~l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~  235 (256)
                      ||++++           .+++.....++.|++             +||||+||+++.++.+||+|||++......... .
T Consensus        91 e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~Nili~~~~~~kl~dfg~~~~~~~~~~~-~  169 (278)
T 3cok_A           91 EMCHNGEMNRYLKNRVKPFSENEARHFMHQIITGMLYLHSHGILHRDLTLSNLLLTRNMNIKIADFGLATQLKMPHEK-H  169 (278)
T ss_dssp             ECCTTEEHHHHHHTCSSCCCHHHHHHHHHHHHHHHHHHHHTTEECSSCCGGGEEECTTCCEEECCCTTCEECC-------
T ss_pred             ecCCCCcHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEEcCCCCEEEEeecceeeccCCCCc-c
Confidence            999774           356667777777766             599999999999999999999999876543222 2


Q ss_pred             eeeeecccc----cccccCCCCCCC
Q 047066          236 TMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       236 ~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      ....||+.|    .+.+..++.++|
T Consensus       170 ~~~~~~~~y~aPE~~~~~~~~~~~D  194 (278)
T 3cok_A          170 YTLCGTPNYISPEIATRSAHGLESD  194 (278)
T ss_dssp             ----------------------CTH
T ss_pred             eeccCCCCcCCcchhcCCCCCchhh
Confidence            234689988    455566677776

>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A

Probab=99.88  E-value=1.2e-23  Score=178.97  Aligned_cols=148  Identities=22%  Similarity=0.239  Sum_probs=111.1

Q ss_pred             hcCCCcccceeeeeCceEEEEEEECCCcEEEEEEecccC--------hhHHHHHHHHHHHHHhCC---------CCcccc
Q 047066          102 ATNNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVY--------QSQIEQCINKVVVLSQIN---------HRNVVG  164 (256)
Q Consensus       102 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~--------~~~~~~~~~E~~~l~~l~---------h~niv~  164 (256)
                      ..++|++.+.||+|+||+||+|.. +++.||+|.+....        ....+.+.+|+.+++.++         ||||++
T Consensus        18 ~~~~y~~~~~lG~G~~g~V~~~~~-~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~~~~~~~h~niv~   96 (336)
T 2vuw_A           18 PTEKLQRCEKIGEGVFGEVFQTIA-DHTPVAIKIIAIEGPDLVNGSHQKTFEEILPEIIISKELSLLSGEVCNRTEGFIG   96 (336)
T ss_dssp             CHHHHHTCEEEEEETTEEEEEEEE-TTEEEEEEEEEESCSSCBTTBCCBCHHHHHHHHHHHHHHHHGGGCSSSBCCCBCC
T ss_pred             ccccchheeeecccCceEEEEEEe-CCceEEEEEEecCCccccccccchhHHHHHHHHHHHHHHHHhhccccccCCchhh
Confidence            346789999999999999999998 78999999886432        233477889999998885         777777


Q ss_pred             eeeEEE-----------------E-------------CCEEEEEEecCCCCC---------CCHHHHHHHHHHHH-----
Q 047066          165 LLGCCL-----------------E-------------TEVPLLVNEFVKLPT---------ISWEVRIRIAAETA-----  200 (256)
Q Consensus       165 l~~~~~-----------------~-------------~~~~~lv~e~~~~~~---------l~~~~~~~~~~~i~-----  200 (256)
                      +.+.+.                 +             .+..++||||+++|+         +++.....++.|++     
T Consensus        97 l~~~~~~~~~~hp~iv~~~~~~~~~~~~~~~~~~~~~~~~~~lv~E~~~~g~ll~~~~~~~~~~~~~~~i~~qi~~aL~~  176 (336)
T 2vuw_A           97 LNSVHCVQGSYPPLLLKAWDHYNSTKGSANDRPDFFKDDQLFIVLEFEFGGIDLEQMRTKLSSLATAKSILHQLTASLAV  176 (336)
T ss_dssp             EEEEEEEESSCCHHHHHHHHHHHHHTCCSSCCSCCCCTTCEEEEEEEECCCEETGGGTTTCCCHHHHHHHHHHHHHHHHH
T ss_pred             hcceeEecCCCcHHHHHHHHHHhhhccccccCccccccCeEEEEEEecCCCccHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence            766543                 2             678999999998864         35555555555443     


Q ss_pred             ---------hccCCCcEEEcCCC--------------------cEEEEecCCceecCCCCceeeeeeeecccc---cccc
Q 047066          201 ---------EDIKSINILLDDNY--------------------TTKVCDFGASKLVPIDETQLSTMVQGTLGY---YLHT  248 (256)
Q Consensus       201 ---------rdlk~~NiLi~~~~--------------------~~ki~DFGla~~~~~~~~~~~~~~~Gt~~y---~~~~  248 (256)
                               |||||+|||++.++                    .+||+|||+|+.....      ..+||+.|   ++..
T Consensus       177 lH~~~~ivHrDlKp~NILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFG~a~~~~~~------~~~gt~~y~aPE~~~  250 (336)
T 2vuw_A          177 AEASLRFEHRDLHWGNVLLKKTSLKKLHYTLNGKSSTIPSCGLQVSIIDYTLSRLERDG------IVVFCDVSMDEDLFT  250 (336)
T ss_dssp             HHHHHCCBCSCCCGGGEEEEECSCSEEEEEETTEEEEEECTTEEEEECCCTTCBEEETT------EEECCCCTTCSGGGC
T ss_pred             HHHhCCEeECCCCHHHEEEeccCCcceeeeccCccccccCCCceEEEeeccccEecCCC------cEEEeecccChhhhc
Confidence                     79999999999887                    9999999999976532      34699999   4433


Q ss_pred             cCCCCCCC
Q 047066          249 SQGTLNKE  256 (256)
Q Consensus       249 ~~~t~ksD  256 (256)
                      +..+.++|
T Consensus       251 g~~~~~~D  258 (336)
T 2vuw_A          251 GDGDYQFD  258 (336)
T ss_dssp             CCSSHHHH
T ss_pred             CCCcccee
Confidence            44354443

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B*

Probab=99.88  E-value=3.8e-22  Score=173.01  Aligned_cols=154  Identities=13%  Similarity=0.151  Sum_probs=121.4

Q ss_pred             cCCCcccceeeee--CceEEEEEEEC-CCcEEEEEEecccC--hhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEE
Q 047066          103 TNNYAYDRMIGRG--GYGTVFLGSLS-DNKAIAIKKSRIVY--QSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLL  177 (256)
Q Consensus       103 ~~~~~~~~~lg~G--~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~l  177 (256)
                      .++|++.+.||+|  +||.||+|..+ +++.||+|.+....  ....+.+.+|+.+++.++||||+++++++...+..++
T Consensus        24 ~~~y~~~~~lG~G~~~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~l  103 (389)
T 3gni_B           24 GGCYELLTVIGKGFEDLMTVNLARYKPTGEYVTVRRINLEACSNEMVTFLQGELHVSKLFNHPNIVPYRATFIADNELWV  103 (389)
T ss_dssp             GGGEEEEEEEEEETTTTEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEE
T ss_pred             CCcEEEEecccCCcCCceEEEEEEEcCCCCEEEEEEecccccChHHHHHHHHHHHHHHhCCCCCCCcEeEEEEECCEEEE
Confidence            3679999999999  99999999976 68999999886432  4455778899999999999999999999999999999


Q ss_pred             EEecCCCCCC------------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCc
Q 047066          178 VNEFVKLPTI------------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDET  232 (256)
Q Consensus       178 v~e~~~~~~l------------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~  232 (256)
                      ||||+++++|            ++.....++.|++             |||||+|||++.++.+||+|||++........
T Consensus       104 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~ivHrDlkp~NIll~~~~~~kl~dfg~~~~~~~~~~  183 (389)
T 3gni_B          104 VTSFMAYGSAKDLICTHFMDGMNELAIAYILQGVLKALDYIHHMGYVHRSVKASHILISVDGKVYLSGLRSNLSMISHGQ  183 (389)
T ss_dssp             EEECCTTCBHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTCCEEECCGGGCEECEETTE
T ss_pred             EEEccCCCCHHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCCEEEcccccceeeccccc
Confidence            9999987554            5555566666655             69999999999999999999999876532211


Q ss_pred             e------eeeeeeecccc----cccc--cCCCCCCC
Q 047066          233 Q------LSTMVQGTLGY----YLHT--SQGTLNKE  256 (256)
Q Consensus       233 ~------~~~~~~Gt~~y----~~~~--~~~t~ksD  256 (256)
                      .      ......||+.|    .+.+  ..++.++|
T Consensus       184 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~D  219 (389)
T 3gni_B          184 RQRVVHDFPKYSVKVLPWLSPEVLQQNLQGYDAKSD  219 (389)
T ss_dssp             ECSCBCCCCTTCTTTGGGSCHHHHSTTSSCBCTHHH
T ss_pred             cccccccccccccccccccCHHHHhccCCCCCcHhH
Confidence            1      11123588888    3333  45777665

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*

Probab=99.88  E-value=1.5e-22  Score=170.94  Aligned_cols=152  Identities=21%  Similarity=0.326  Sum_probs=118.2

Q ss_pred             CCcccceeeeeCceEEEEEEEC-----CCcEEEEEEecccC-hhHHHHHHHHHHHHHhCCCCcccceeeEEEE--CCEEE
Q 047066          105 NYAYDRMIGRGGYGTVFLGSLS-----DNKAIAIKKSRIVY-QSQIEQCINKVVVLSQINHRNVVGLLGCCLE--TEVPL  176 (256)
Q Consensus       105 ~~~~~~~lg~G~~g~V~~~~~~-----~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~--~~~~~  176 (256)
                      .|++.+.||+|+||.||++.+.     +++.||+|.+.... ....+.+.+|+.+++.++||||+++++++..  ....+
T Consensus        32 ~~~~~~~lG~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~  111 (318)
T 3lxp_A           32 YLKKIRDLGEGHFGKVSLYCYDPTNDGTGEMVAVKALKADAGPQHRSGWKQEIDILRTLYHEHIIKYKGCCEDAGAASLQ  111 (318)
T ss_dssp             GEEEEEEEEECSSEEEEEEEECSCC--CCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTTTEEE
T ss_pred             HHhhhheecCCCCeEEEEEEEccCCCCCCcEEEEEEeccccChHHHHHHHHHHHHHHhCCCcchhhEEEEEecCCCceEE
Confidence            4589999999999999998643     57899999987543 4556789999999999999999999999998  46789


Q ss_pred             EEEecCCCCCC---------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCcee
Q 047066          177 LVNEFVKLPTI---------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQL  234 (256)
Q Consensus       177 lv~e~~~~~~l---------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~  234 (256)
                      ++|||+++++|         ++.....++.+++             +||||+|||++.++.+||+|||+++.........
T Consensus       112 lv~e~~~~~~L~~~l~~~~~~~~~~~~i~~~l~~~l~~LH~~~ivH~Dikp~Nil~~~~~~~kl~Dfg~a~~~~~~~~~~  191 (318)
T 3lxp_A          112 LVMEYVPLGSLRDYLPRHSIGLAQLLLFAQQICEGMAYLHAQHYIHRDLAARNVLLDNDRLVKIGDFGLAKAVPEGHEYY  191 (318)
T ss_dssp             EEECCCTTCBHHHHGGGSCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECCGGGCEECCTTCSEE
T ss_pred             EEEecccCCcHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhCCccCCCCchheEEEcCCCCEEECCcccccccccccccc
Confidence            99999988664         5666667776665             5999999999999999999999999876543322


Q ss_pred             --eeeeeecccc----cccccCCCCCCC
Q 047066          235 --STMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       235 --~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                        .....||+.|    .+.+..++.++|
T Consensus       192 ~~~~~~~~~~~y~aPE~~~~~~~~~~~D  219 (318)
T 3lxp_A          192 RVREDGDSPVFWYAPECLKEYKFYYASD  219 (318)
T ss_dssp             EC---CCCCGGGCCHHHHHHCEEEHHHH
T ss_pred             ccccCCCCCceeeChHHhcCCCCCcHHH
Confidence              2234577777    344444554443

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}

Probab=99.88  E-value=7.7e-23  Score=174.57  Aligned_cols=143  Identities=21%  Similarity=0.283  Sum_probs=112.0

Q ss_pred             hhcCCCcccceeeeeCceEEEEEEECCCcEEEEEEeccc--ChhHHHHHHHHHHHHHhCCC--CcccceeeEEEECCEEE
Q 047066          101 IATNNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIV--YQSQIEQCINKVVVLSQINH--RNVVGLLGCCLETEVPL  176 (256)
Q Consensus       101 ~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h--~niv~l~~~~~~~~~~~  176 (256)
                      +..+.|++.+.||+|+||.||++...+++.||+|.+...  .....+.+.+|+.++..++|  |||+++++++...+..+
T Consensus         6 ~~~~~y~i~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~~~~~~   85 (343)
T 3dbq_A            6 VKGRIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIY   85 (343)
T ss_dssp             SSSCEEEEEEEESCCSSEEEEEEECTTSCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEE
T ss_pred             eecCEEEEEEEEecCCCeEEEEEEeCCCCEEEEEEeeccccchHHHHHHHHHHHHHHhhhhcCCceEEEeeeEeeCCEEE
Confidence            345679999999999999999999888999999988643  34455788999999999976  99999999999999999


Q ss_pred             EEEecCCC---------CCCCHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCce-
Q 047066          177 LVNEFVKL---------PTISWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQ-  233 (256)
Q Consensus       177 lv~e~~~~---------~~l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~-  233 (256)
                      +|||+..+         +.+++.....++.|++             |||||+|||++ ++.+||+|||+|+.+..+... 
T Consensus        86 lv~e~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~al~~lH~~~iiHrDikp~NIll~-~~~~kl~DFG~a~~~~~~~~~~  164 (343)
T 3dbq_A           86 MVMECGNIDLNSWLKKKKSIDPWERKSYWKNMLEAVHTIHQHGIVHSDLKPANFLIV-DGMLKLIDFGIANQMQPDTTSV  164 (343)
T ss_dssp             EEECCCSEEHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEEE-TTEEEECCCSSSCCC-------
T ss_pred             EEEeCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCcceEEEE-CCcEEEeecccccccCcccccc
Confidence            99996533         4466767777776665             69999999997 578999999999877544332 


Q ss_pred             eeeeeeecccc
Q 047066          234 LSTMVQGTLGY  244 (256)
Q Consensus       234 ~~~~~~Gt~~y  244 (256)
                      ......||+.|
T Consensus       165 ~~~~~~gt~~y  175 (343)
T 3dbq_A          165 VKDSQVGTVNY  175 (343)
T ss_dssp             -----CCCCSS
T ss_pred             cCCCCcCCcCc
Confidence            22345699999

>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A*

Probab=99.88  E-value=1.5e-22  Score=171.89  Aligned_cols=154  Identities=25%  Similarity=0.341  Sum_probs=113.2

Q ss_pred             hcCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC--hhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEE
Q 047066          102 ATNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY--QSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLV  178 (256)
Q Consensus       102 ~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv  178 (256)
                      ..++|++.+.||+|+||.||+|... +++.||+|.+....  ....+.+.+|+.+++.++||||+++++++...+..++|
T Consensus        32 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv  111 (329)
T 3gbz_A           32 SIDRYRRITKLGEGTYGEVYKAIDTVTNETVAIKRIRLEHEEEGVPGTAIREVSLLKELQHRNIIELKSVIHHNHRLHLI  111 (329)
T ss_dssp             CGGGEEEEEEEEECSSSEEEEEEETTTTEEEEEEECCCCC--------CHHHHHHGGGCCCTTBCCEEEEEEETTEEEEE
T ss_pred             chhhEEEEEEEEecCCeEEEEEEECCCCceEEEEEEcccccccccchhHHHHHHHHHHcCCCCcceEEEEEecCCEEEEE
Confidence            3468999999999999999999965 68899999886543  22345678999999999999999999999999999999


Q ss_pred             EecCCC---------CCCCHHHHHHHHHHHH-------------hccCCCcEEE-----cCCCcEEEEecCCceecCCCC
Q 047066          179 NEFVKL---------PTISWEVRIRIAAETA-------------EDIKSINILL-----DDNYTTKVCDFGASKLVPIDE  231 (256)
Q Consensus       179 ~e~~~~---------~~l~~~~~~~~~~~i~-------------rdlk~~NiLi-----~~~~~~ki~DFGla~~~~~~~  231 (256)
                      |||+++         +.+++.....++.|++             +||||+|||+     ++++.+||+|||+|+....+.
T Consensus       112 ~e~~~~~L~~~~~~~~~~~~~~~~~i~~ql~~~l~~LH~~~ivH~Dlkp~NIll~~~~~~~~~~~kl~Dfg~a~~~~~~~  191 (329)
T 3gbz_A          112 FEYAENDLKKYMDKNPDVSMRVIKSFLYQLINGVNFCHSRRCLHRDLKPQNLLLSVSDASETPVLKIGDFGLARAFGIPI  191 (329)
T ss_dssp             EECCSEEHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEEC-----CCEEEECCTTHHHHHC---
T ss_pred             EecCCCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhCCEECCCCCHHHEEEecCCCCccceEEECcCCCccccCCcc
Confidence            999975         3466666677777665             6999999999     455569999999998775433


Q ss_pred             ceeeeeeeecccc----cccc-cCCCCCCC
Q 047066          232 TQLSTMVQGTLGY----YLHT-SQGTLNKE  256 (256)
Q Consensus       232 ~~~~~~~~Gt~~y----~~~~-~~~t~ksD  256 (256)
                      .. .....||+.|    .+.+ ..++.++|
T Consensus       192 ~~-~~~~~~t~~y~aPE~~~~~~~~~~~~D  220 (329)
T 3gbz_A          192 RQ-FTHEIITLWYRPPEILLGSRHYSTSVD  220 (329)
T ss_dssp             ---------CCTTCCHHHHTTCCCCCTHHH
T ss_pred             cc-cCCCcCCccccCHHHhcCCCCCCcHHH
Confidence            22 2344689999    3333 34677765

>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens}

Probab=99.88  E-value=5.1e-23  Score=174.34  Aligned_cols=152  Identities=22%  Similarity=0.295  Sum_probs=113.0

Q ss_pred             CCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccChhH-HHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEec
Q 047066          104 NNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVYQSQ-IEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEF  181 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~-~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~  181 (256)
                      ++|.+.+.||+|+||.||+|... +++.||+|.+....... ...+.+|+.+++.++||||+++++++...+..++||||
T Consensus         2 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~   81 (324)
T 3mtl_A            2 ETYIKLDKLGEGTYATVYKGKSKLTDNLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIIHTEKSLTLVFEY   81 (324)
T ss_dssp             CSEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECC------CCCCCCCHHHHSCCCCTTBCCEEEEEECSSCEEEEEEC
T ss_pred             CceEEEEEEcCCCCEEEEEEEECCCCcEEEEEEEecccccccchhHHHHHHHHHhcCCCCCCeeeeEEeeCCEEEEEecc
Confidence            57899999999999999999976 68899999886543221 12456799999999999999999999999999999999


Q ss_pred             CCC----------CCCCHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceeeeee
Q 047066          182 VKL----------PTISWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMV  238 (256)
Q Consensus       182 ~~~----------~~l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~~~  238 (256)
                      +++          ..++......++.+++             +||||+|||++.++.+||+|||+++....+... ....
T Consensus        82 ~~~~l~~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~~~~~-~~~~  160 (324)
T 3mtl_A           82 LDKDLKQYLDDCGNIINMHNVKLFLFQLLRGLAYCHRQKVLHRDLKPQNLLINERGELKLADFGLARAKSIPTKT-YDNE  160 (324)
T ss_dssp             CSEEHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHTTEEESSCCGGGEEECTTCCEEECSSSEEECC-----------
T ss_pred             cccCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCccCCCcCHHHEEECCCCCEEEccCcccccccCCccc-cccc
Confidence            975          3356666666666665             699999999999999999999999876543322 2334


Q ss_pred             eecccc----ccc-ccCCCCCCC
Q 047066          239 QGTLGY----YLH-TSQGTLNKE  256 (256)
Q Consensus       239 ~Gt~~y----~~~-~~~~t~ksD  256 (256)
                      .||+.|    .+. ...++.++|
T Consensus       161 ~~t~~y~aPE~~~~~~~~~~~~D  183 (324)
T 3mtl_A          161 VVTLWYRPPDILLGSTDYSTQID  183 (324)
T ss_dssp             --CGGGCCHHHHTTCCCCCTHHH
T ss_pred             cCcccccChhhhcCCCCCCcHHH
Confidence            689999    233 345677665

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}

Probab=99.88  E-value=5.3e-22  Score=177.86  Aligned_cols=153  Identities=25%  Similarity=0.294  Sum_probs=121.0

Q ss_pred             hcCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccCh-------------hHHHHHHHHHHHHHhCCCCcccceee
Q 047066          102 ATNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVYQ-------------SQIEQCINKVVVLSQINHRNVVGLLG  167 (256)
Q Consensus       102 ~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~-------------~~~~~~~~E~~~l~~l~h~niv~l~~  167 (256)
                      ..++|.+.+.||+|+||.||+|..+ ++..+|+|.+.....             ...+.+.+|+.+++.++||||+++++
T Consensus        34 i~~~Y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~  113 (504)
T 3q5i_A           34 IGESYFKVRKLGSGAYGEVLLCKEKNGHSEKAIKVIKKSQFDKGRYSDDNKNIEKFHEEIYNEISLLKSLDHPNIIKLFD  113 (504)
T ss_dssp             GGGTEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEC----------------CTHHHHHHHHHHHHTCCCTTBCCEEE
T ss_pred             cccceEEEeEecccCCeEEEEEEECCCCcEEEEEEEEhhhcccccccccchhhHHHHHHHHHHHHHHHhCCCCCCCeEEE
Confidence            3578999999999999999999976 578999998764321             23467899999999999999999999


Q ss_pred             EEEECCEEEEEEecCCCCCC----------CHHHHHHHHHHHH-------------hccCCCcEEEcCCC---cEEEEec
Q 047066          168 CCLETEVPLLVNEFVKLPTI----------SWEVRIRIAAETA-------------EDIKSINILLDDNY---TTKVCDF  221 (256)
Q Consensus       168 ~~~~~~~~~lv~e~~~~~~l----------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~---~~ki~DF  221 (256)
                      ++.+.+..++||||+++++|          ++.....++.|++             |||||+|||++.++   .+||+||
T Consensus       114 ~~~~~~~~~lv~e~~~gg~L~~~l~~~~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~Dlkp~Nil~~~~~~~~~~kl~Df  193 (504)
T 3q5i_A          114 VFEDKKYFYLVTEFYEGGELFEQIINRHKFDECDAANIMKQILSGICYLHKHNIVHRDIKPENILLENKNSLLNIKIVDF  193 (504)
T ss_dssp             EEECSSEEEEEEECCTTCBHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEESSTTCCSSEEECCC
T ss_pred             EEEcCCEEEEEEecCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeEeCCCcHHHEEEecCCCCccEEEEEC
Confidence            99999999999999998764          5566666666665             69999999998775   6999999


Q ss_pred             CCceecCCCCceeeeeeeecccc---cccccCCCCCCC
Q 047066          222 GASKLVPIDETQLSTMVQGTLGY---YLHTSQGTLNKE  256 (256)
Q Consensus       222 Gla~~~~~~~~~~~~~~~Gt~~y---~~~~~~~t~ksD  256 (256)
                      |+|+....+..  .....||+.|   +...+.++.++|
T Consensus       194 g~a~~~~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~D  229 (504)
T 3q5i_A          194 GLSSFFSKDYK--LRDRLGTAYYIAPEVLKKKYNEKCD  229 (504)
T ss_dssp             TTCEECCTTSC--BCCCCSCTTTCCHHHHTTCBCTHHH
T ss_pred             CCCEEcCCCCc--cccccCCcCCCCHHHhccCCCchHH
Confidence            99998754422  2345699999   444567777765

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii}

Probab=99.88  E-value=2.4e-22  Score=167.08  Aligned_cols=151  Identities=24%  Similarity=0.311  Sum_probs=116.4

Q ss_pred             CCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC-hhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEec
Q 047066          104 NNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY-QSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEF  181 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~  181 (256)
                      ++|.+.+.||+|+||.||++... ++..+|+|.+.... ....+.+.+|+.+++.++||||+++++++...+..++||||
T Consensus        22 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~  101 (285)
T 3is5_A           22 DLFIFKRKLGSGAFGDVHLVEERSSGLERVIKTINKDRSQVPMEQIEAEIEVLKSLDHPNIIKIFEVFEDYHNMYIVMET  101 (285)
T ss_dssp             HHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCCSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEECC
T ss_pred             hheeecceeccCCCeEEEEEEEccCCceEEEEEeeccccchhHHHHHHHHHHHHhCCCchHHhHHHheecCCeEEEEEEe
Confidence            57899999999999999999975 68899999876543 34457889999999999999999999999999999999999


Q ss_pred             CCCCCC--------------CHHHHHHHHHHHH-------------hccCCCcEEE---cCCCcEEEEecCCceecCCCC
Q 047066          182 VKLPTI--------------SWEVRIRIAAETA-------------EDIKSINILL---DDNYTTKVCDFGASKLVPIDE  231 (256)
Q Consensus       182 ~~~~~l--------------~~~~~~~~~~~i~-------------rdlk~~NiLi---~~~~~~ki~DFGla~~~~~~~  231 (256)
                      +++++|              ++.....++.+++             +||||+|||+   +.++.+||+|||+++......
T Consensus       102 ~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~ivH~dikp~NIl~~~~~~~~~~kl~Dfg~a~~~~~~~  181 (285)
T 3is5_A          102 CEGGELLERIVSAQARGKALSEGYVAELMKQMMNALAYFHSQHVVHKDLKPENILFQDTSPHSPIKIIDFGLAELFKSDE  181 (285)
T ss_dssp             CSCCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCSGGGEEESSSSTTCCEEECCCCCCCC-----
T ss_pred             CCCCcHHHHHHhhhhcccCCCHHHHHHHHHHHHHHHHHHHhCCEEECCCCHHHEEEecCCCCCCEEEEeeecceecCCcc
Confidence            988654              4555566666655             5999999999   456789999999998765432


Q ss_pred             ceeeeeeeecccc---cccccCCCCCCC
Q 047066          232 TQLSTMVQGTLGY---YLHTSQGTLNKE  256 (256)
Q Consensus       232 ~~~~~~~~Gt~~y---~~~~~~~t~ksD  256 (256)
                      .  .....||+.|   +...+.++.++|
T Consensus       182 ~--~~~~~~t~~y~aPE~~~~~~~~~~D  207 (285)
T 3is5_A          182 H--STNAAGTALYMAPEVFKRDVTFKCD  207 (285)
T ss_dssp             -------CTTGGGCCHHHHTTCCCHHHH
T ss_pred             c--CcCcccccCcCChHHhccCCCcccC
Confidence            2  2345689999   444456666554

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*

Probab=99.88  E-value=3.3e-22  Score=169.71  Aligned_cols=153  Identities=25%  Similarity=0.332  Sum_probs=116.6

Q ss_pred             cCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC--hhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEE
Q 047066          103 TNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY--QSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVN  179 (256)
Q Consensus       103 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~  179 (256)
                      .++|++.+.||+|+||.||+|... +++.||+|.+....  ....+.+.+|+.+++.++||||+++++++...+..++||
T Consensus        24 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~  103 (331)
T 4aaa_A           24 MEKYENLGLVGEGSYGMVMKCRNKDTGRIVAIKKFLESDDDKMVKKIAMREIKLLKQLRHENLVNLLEVCKKKKRWYLVF  103 (331)
T ss_dssp             GGGEEEEEEGGGGTTSSEEEEEETTTCCEEEEEEEESCSSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred             hhhheeeeEEeecCCEEEEEEEECCCCceEEEEEEecCCCchHHHHHHHHHHHHHhhCCCCCEeeEEEEeecCCEEEEEE
Confidence            367999999999999999999976 58899999875433  334466889999999999999999999999999999999


Q ss_pred             ecCCCC----------CCCHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceeee
Q 047066          180 EFVKLP----------TISWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLST  236 (256)
Q Consensus       180 e~~~~~----------~l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~  236 (256)
                      ||++++          .+++.....++.+++             +||||+|||++.++.+||+|||+++.+...... ..
T Consensus       104 e~~~~~~l~~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~-~~  182 (331)
T 4aaa_A          104 EFVDHTILDDLELFPNGLDYQVVQKYLFQIINGIGFCHSHNIIHRDIKPENILVSQSGVVKLCDFGFARTLAAPGEV-YD  182 (331)
T ss_dssp             ECCSEEHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTSCEEECCCTTC------------
T ss_pred             ecCCcchHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHCCEEccCcChheEEEcCCCcEEEEeCCCceeecCCccc-cC
Confidence            999763          456666666776665             599999999999999999999999876543322 23


Q ss_pred             eeeecccc----cccc-cCCCCCCC
Q 047066          237 MVQGTLGY----YLHT-SQGTLNKE  256 (256)
Q Consensus       237 ~~~Gt~~y----~~~~-~~~t~ksD  256 (256)
                      ...||+.|    .+.+ ..++.++|
T Consensus       183 ~~~~t~~y~aPE~~~~~~~~~~~~D  207 (331)
T 4aaa_A          183 DEVATRWYRAPELLVGDVKYGKAVD  207 (331)
T ss_dssp             -CCCCCTTCCHHHHTTCTTCCTHHH
T ss_pred             CCcCCccccCcccccCCCCcchHHH
Confidence            34589988    3333 25666665

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ...

Probab=99.88  E-value=1.2e-22  Score=174.30  Aligned_cols=151  Identities=21%  Similarity=0.298  Sum_probs=119.4

Q ss_pred             cCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEeccc-ChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEe
Q 047066          103 TNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIV-YQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNE  180 (256)
Q Consensus       103 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e  180 (256)
                      .++|++.+.||+|+||.||++... ++..||+|.+... .....+.+.+|+.+++.++||||+++++++...+..++|||
T Consensus        32 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e  111 (360)
T 3eqc_A           32 DDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICME  111 (360)
T ss_dssp             GGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEECCCCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEETTEEEEEEC
T ss_pred             cccceeeeeecCCCCeEEEEEEECCCCcEEEEEEeccccCHHHHHHHHHHHHHHHHCCCCCEEEEeEEEEECCEEEEEEE
Confidence            467999999999999999999976 6889999988654 34555789999999999999999999999999999999999


Q ss_pred             cCCCCCC----------CHHHHHHHHHHH--------------HhccCCCcEEEcCCCcEEEEecCCceecCCCCceeee
Q 047066          181 FVKLPTI----------SWEVRIRIAAET--------------AEDIKSINILLDDNYTTKVCDFGASKLVPIDETQLST  236 (256)
Q Consensus       181 ~~~~~~l----------~~~~~~~~~~~i--------------~rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~  236 (256)
                      |+++++|          ++.....++.++              |+||||+|||++.++.+||+|||+++.....   ...
T Consensus       112 ~~~~~~L~~~l~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~---~~~  188 (360)
T 3eqc_A          112 HMDGGSLDQVLKKAGRIPEQILGKVSIAVIKGLTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDS---MAN  188 (360)
T ss_dssp             CCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHCCCCSCCSGGGEEECTTCCEEECCCCCCHHHHHH---C--
T ss_pred             CCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhCCEEcCCccHHHEEECCCCCEEEEECCCCcccccc---ccc
Confidence            9998775          333333444333              3699999999999999999999999765322   123


Q ss_pred             eeeecccc----cccccCCCCCCC
Q 047066          237 MVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       237 ~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      ...||+.|    .+.+..++.++|
T Consensus       189 ~~~gt~~y~aPE~~~~~~~~~~~D  212 (360)
T 3eqc_A          189 SFVGTRSYMSPERLQGTHYSVQSD  212 (360)
T ss_dssp             --CCCCTTCCHHHHTTCCCSHHHH
T ss_pred             CCCCCCCeECHHHHcCCCCCchhh
Confidence            34689999    455566676655

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A

Probab=99.88  E-value=3.2e-22  Score=169.09  Aligned_cols=152  Identities=21%  Similarity=0.194  Sum_probs=122.4

Q ss_pred             cCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccCh------hHHHHHHHHHHHHHhCCCCcccceeeEEEECCEE
Q 047066          103 TNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVYQ------SQIEQCINKVVVLSQINHRNVVGLLGCCLETEVP  175 (256)
Q Consensus       103 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~------~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~  175 (256)
                      .++|++.+.||+|+||.||+|... +++.+|+|.+.....      ...+.+.+|+.+++.++||||+++++++...+..
T Consensus        11 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~   90 (321)
T 2a2a_A           11 EDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIEREVSILRQVLHHNVITLHDVYENRTDV   90 (321)
T ss_dssp             HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSSSCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEE
T ss_pred             hccEEEeeEeeecCCEEEEEEEECCCCeEEEEEEEecccccccccchhHHHHHHHHHHHHhCCCCCcceEEEEEecCCEE
Confidence            356899999999999999999976 688999998764321      1357789999999999999999999999999999


Q ss_pred             EEEEecCCCCCC----------CHHHHHHHHHHHH-------------hccCCCcEEEcCCC----cEEEEecCCceecC
Q 047066          176 LLVNEFVKLPTI----------SWEVRIRIAAETA-------------EDIKSINILLDDNY----TTKVCDFGASKLVP  228 (256)
Q Consensus       176 ~lv~e~~~~~~l----------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~----~~ki~DFGla~~~~  228 (256)
                      +++|||+++++|          ++.....++.+++             +||||+|||++.++    .+||+|||+++...
T Consensus        91 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~aL~~lH~~~ivH~dikp~NIl~~~~~~~~~~~kl~Dfg~~~~~~  170 (321)
T 2a2a_A           91 VLILELVSGGELFDFLAQKESLSEEEATSFIKQILDGVNYLHTKKIAHFDLKPENIMLLDKNIPIPHIKLIDFGLAHEIE  170 (321)
T ss_dssp             EEEECCCCSCBHHHHHHTCSCEEHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEESCTTSSSCCEEECCCTTCEECC
T ss_pred             EEEEEcCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCChHHEEEecCCCCcCCEEEccCccceecC
Confidence            999999988665          4455556666655             69999999999887    79999999999875


Q ss_pred             CCCceeeeeeeecccc----cccccCCCCCCC
Q 047066          229 IDETQLSTMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       229 ~~~~~~~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      ....  .....||+.|    .+.+..++.++|
T Consensus       171 ~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~D  200 (321)
T 2a2a_A          171 DGVE--FKNIFGTPEFVAPEIVNYEPLGLEAD  200 (321)
T ss_dssp             TTCC--CCCCCSCGGGCCHHHHTTCCCCTHHH
T ss_pred             cccc--ccccCCCCCccCcccccCCCCCCccc
Confidence            4332  2334599999    555666777665

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}

Probab=99.88  E-value=5.8e-23  Score=174.93  Aligned_cols=152  Identities=21%  Similarity=0.288  Sum_probs=121.4

Q ss_pred             cCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccCh--------hHHHHHHHHHHHHHhCCCCcccceeeEEEECC
Q 047066          103 TNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVYQ--------SQIEQCINKVVVLSQINHRNVVGLLGCCLETE  173 (256)
Q Consensus       103 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~--------~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~  173 (256)
                      .++|++.+.||+|+||.||+|... +++.||+|.+.....        ...+.+.+|+.+++.++||||+++++++...+
T Consensus        23 ~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~Iv~~~~~~~~~~  102 (335)
T 3dls_A           23 SQKYSTMSPLGSGAFGFVWTAVDKEKNKEVVVKFIKKEKVLEDCWIEDPKLGKVTLEIAILSRVEHANIIKVLDIFENQG  102 (335)
T ss_dssp             HHHEEEEEECSSSSSCSEEEEEETTTTEEEEEEEEESTTSCTTSEEEETTTEEEEHHHHHHTTCCCTTBCCEEEEEECSS
T ss_pred             ccceEEEeEEEecCCEEEEEEEECCCCcEEEEEEEehhhcccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEeeCC
Confidence            367999999999999999999965 688999998865321        12345778999999999999999999999999


Q ss_pred             EEEEEEecCCCC-----------CCCHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCC
Q 047066          174 VPLLVNEFVKLP-----------TISWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPI  229 (256)
Q Consensus       174 ~~~lv~e~~~~~-----------~l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~  229 (256)
                      ..+++|||+..|           .+++.....++.+++             +||||+|||++.++.+||+|||+++....
T Consensus       103 ~~~lv~e~~~~g~~l~~~~~~~~~l~~~~~~~i~~qi~~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kL~Dfg~a~~~~~  182 (335)
T 3dls_A          103 FFQLVMEKHGSGLDLFAFIDRHPRLDEPLASYIFRQLVSAVGYLRLKDIIHRDIKDENIVIAEDFTIKLIDFGSAAYLER  182 (335)
T ss_dssp             EEEEEEECCTTSCBHHHHHHTCCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTSCEEECCCTTCEECCT
T ss_pred             EEEEEEEeCCCCccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeEEeccCHHHEEEcCCCcEEEeecccceECCC
Confidence            999999998664           467777777777766             69999999999999999999999998754


Q ss_pred             CCceeeeeeeecccc----cccccCC-CCCCC
Q 047066          230 DETQLSTMVQGTLGY----YLHTSQG-TLNKE  256 (256)
Q Consensus       230 ~~~~~~~~~~Gt~~y----~~~~~~~-t~ksD  256 (256)
                      ...  .....||+.|    .+.+..+ +.++|
T Consensus       183 ~~~--~~~~~gt~~y~aPE~~~~~~~~~~~~D  212 (335)
T 3dls_A          183 GKL--FYTFCGTIEYCAPEVLMGNPYRGPELE  212 (335)
T ss_dssp             TCC--BCEECSCGGGCCHHHHTTCCBCSHHHH
T ss_pred             CCc--eeccCCCccccChhhhcCCCCCCCccc
Confidence            432  2345699999    3344444 55544

>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ...

Probab=99.87  E-value=4.5e-22  Score=171.11  Aligned_cols=154  Identities=22%  Similarity=0.323  Sum_probs=122.4

Q ss_pred             cCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC-hhHHHHHHHHHHHHHhCCCCcccceeeEEEEC-----CEE
Q 047066          103 TNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY-QSQIEQCINKVVVLSQINHRNVVGLLGCCLET-----EVP  175 (256)
Q Consensus       103 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~-----~~~  175 (256)
                      .++|++.+.||+|+||.||+|... ++..||+|.+.... ....+.+.+|+.++..++||||+++++++...     ...
T Consensus        26 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~  105 (364)
T 3qyz_A           26 GPRYTNLSYIGEGAYGMVCSAYDNLNKVRVAIKKISPFEHQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIEQMKDV  105 (364)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCTTCHHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSSTTTCCCE
T ss_pred             cccEEEEEEeecCCCeEEEEEEECCCCeEEEEEEeccccCcHHHHHHHHHHHHHHhcCCCCCccceeEEecCCccccceE
Confidence            368999999999999999999975 68899999987543 44457889999999999999999999999764     368


Q ss_pred             EEEEecCCC--------CCCCHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCcee
Q 047066          176 LLVNEFVKL--------PTISWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQL  234 (256)
Q Consensus       176 ~lv~e~~~~--------~~l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~  234 (256)
                      +++|||+.+        +.+++.....++.|++             +||||+|||++.++.+||+|||+++.........
T Consensus       106 ~iv~e~~~~~L~~~l~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~~~~~~  185 (364)
T 3qyz_A          106 YIVQDLMETDLYKLLKTQHLSNDHICYFLYQILRGLKYIHSANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDHT  185 (364)
T ss_dssp             EEEEECCSEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCTTCEECCGGGCBC
T ss_pred             EEEEcccCcCHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCChHhEEECCCCCEEEEeCcceEecCCCCCcc
Confidence            999999986        4467777777777766             5999999999999999999999998765332211


Q ss_pred             --eeeeeecccc----c-ccccCCCCCCC
Q 047066          235 --STMVQGTLGY----Y-LHTSQGTLNKE  256 (256)
Q Consensus       235 --~~~~~Gt~~y----~-~~~~~~t~ksD  256 (256)
                        .....||+.|    . .....++.++|
T Consensus       186 ~~~~~~~gt~~y~aPE~~~~~~~~~~~~D  214 (364)
T 3qyz_A          186 GFLTEYVATRWYRAPEIMLNSKGYTKSID  214 (364)
T ss_dssp             CTTCCCCSCGGGCCHHHHHTBCSCSTHHH
T ss_pred             ccccccccccCCCCCHHhcCCCCCCcchh
Confidence              2334699999    2 33444677665

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A*

Probab=99.87  E-value=2.8e-22  Score=171.45  Aligned_cols=153  Identities=22%  Similarity=0.312  Sum_probs=120.7

Q ss_pred             CCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC--hhHHHHHHHHHHHHHhCCCCcccceeeEEEE--------C
Q 047066          104 NNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY--QSQIEQCINKVVVLSQINHRNVVGLLGCCLE--------T  172 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~--------~  172 (256)
                      ++|++.+.||+|+||.||+|... +++.||+|.+....  ......+.+|+.+++.++||||+++++++..        .
T Consensus        17 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~   96 (351)
T 3mi9_A           17 SKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKASPYNRCK   96 (351)
T ss_dssp             GGEEEEEECSSCSTTSEEEEEETTTCCEEEEEECCCSSCSSSSCHHHHHHHHHHHHCCCTTBCCEEEEEEEC--------
T ss_pred             cceeEEEEEecCCCcEEEEEEECCCCCEEEEEEEecccccccchHHHHHHHHHHHhccCCCcccHhheeeccccccccCC
Confidence            57999999999999999999974 78999999875433  2234578899999999999999999999987        4


Q ss_pred             CEEEEEEecCCC----------CCCCHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCC
Q 047066          173 EVPLLVNEFVKL----------PTISWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPI  229 (256)
Q Consensus       173 ~~~~lv~e~~~~----------~~l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~  229 (256)
                      +..++||||+++          +.+++.....++.|++             +||||+|||++.++.+||+|||+|+.+..
T Consensus        97 ~~~~lv~e~~~~~l~~~l~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~a~~~~~  176 (351)
T 3mi9_A           97 GSIYLVFDFCEHDLAGLLSNVLVKFTLSEIKRVMQMLLNGLYYIHRNKILHRDMKAANVLITRDGVLKLADFGLARAFSL  176 (351)
T ss_dssp             CEEEEEEECCSEEHHHHHHCTTSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEECCC
T ss_pred             ceEEEEEeccCCCHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHCCeeCCCCCHHHEEEcCCCCEEEccchhcccccc
Confidence            468999999975          4577777777777766             59999999999999999999999987653


Q ss_pred             CCc---eeeeeeeecccc----ccc-ccCCCCCCC
Q 047066          230 DET---QLSTMVQGTLGY----YLH-TSQGTLNKE  256 (256)
Q Consensus       230 ~~~---~~~~~~~Gt~~y----~~~-~~~~t~ksD  256 (256)
                      ...   .......||+.|    .+. ...++.++|
T Consensus       177 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~D  211 (351)
T 3mi9_A          177 AKNSQPNRYTNRVVTLWYRPPELLLGERDYGPPID  211 (351)
T ss_dssp             CSSSSCCCCCSSCSCGGGCCHHHHTTCCSCCTHHH
T ss_pred             cccccccccCCcccccCccCchhhcCCCCCCcHhH
Confidence            221   122345689999    233 244677665

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*

Probab=99.87  E-value=2.5e-22  Score=179.53  Aligned_cols=152  Identities=24%  Similarity=0.256  Sum_probs=117.7

Q ss_pred             cCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC--hhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEE
Q 047066          103 TNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY--QSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVN  179 (256)
Q Consensus       103 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~  179 (256)
                      .+.|++.+.||+|+||.||+|..+ ++..+|+|.+....  ......+.+|+.+++.++||||+++++++...+..++||
T Consensus        36 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~  115 (494)
T 3lij_A           36 SEMYQRVKKLGSGAYGEVLLCRDKVTHVERAIKIIRKTSVSTSSNSKLLEEVAVLKLLDHPNIMKLYDFFEDKRNYYLVM  115 (494)
T ss_dssp             HHHEEEEEEEECC---EEEEEEETTTCCEEEEEEEEC-----CTTHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             hcCeEEeeEEecCCCEEEEEEEECCCCcEEEEEEEeccccCchHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEE
Confidence            356999999999999999999976 68899999886532  233467899999999999999999999999999999999


Q ss_pred             ecCCCCCC----------CHHHHHHHHHHHH-------------hccCCCcEEEcCC---CcEEEEecCCceecCCCCce
Q 047066          180 EFVKLPTI----------SWEVRIRIAAETA-------------EDIKSINILLDDN---YTTKVCDFGASKLVPIDETQ  233 (256)
Q Consensus       180 e~~~~~~l----------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~---~~~ki~DFGla~~~~~~~~~  233 (256)
                      ||+++++|          ++.....++.|++             |||||+|||++..   +.+||+|||+|+....... 
T Consensus       116 e~~~~g~L~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~Dlkp~Nil~~~~~~~~~~kl~DfG~a~~~~~~~~-  194 (494)
T 3lij_A          116 ECYKGGELFDEIIHRMKFNEVDAAVIIKQVLSGVTYLHKHNIVHRDLKPENLLLESKEKDALIKIVDFGLSAVFENQKK-  194 (494)
T ss_dssp             ECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEESCSSTTCCEEECCCTTCEECBTTBC-
T ss_pred             ecCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCceeccCChhhEEEeCCCCCCcEEEEECCCCeECCCCcc-
Confidence            99999765          4455555665554             6999999999764   4599999999988754322 


Q ss_pred             eeeeeeecccc---cccccCCCCCCC
Q 047066          234 LSTMVQGTLGY---YLHTSQGTLNKE  256 (256)
Q Consensus       234 ~~~~~~Gt~~y---~~~~~~~t~ksD  256 (256)
                       ....+||+.|   ++..+.++.++|
T Consensus       195 -~~~~~gt~~y~aPE~l~~~~~~~~D  219 (494)
T 3lij_A          195 -MKERLGTAYYIAPEVLRKKYDEKCD  219 (494)
T ss_dssp             -BCCCCSCTTTCCHHHHTTCBCTHHH
T ss_pred             -ccccCCCcCeeCHHHHcccCCCchh
Confidence             2345699999   444567777765

>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A*

Probab=99.87  E-value=6e-22  Score=169.98  Aligned_cols=159  Identities=24%  Similarity=0.300  Sum_probs=117.8

Q ss_pred             hHHHHhhcCCCcccceeeeeCceEEEEEEECCCcEEEEEEecccC-----------hhHHHHHHHHHHHHHhCCCCcccc
Q 047066           96 AGELKIATNNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVY-----------QSQIEQCINKVVVLSQINHRNVVG  164 (256)
Q Consensus        96 ~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~-----------~~~~~~~~~E~~~l~~l~h~niv~  164 (256)
                      ..++....++|.+.+.||+|+||.||+|...++..||+|.+....           ....+.+.+|+.+++.++||||++
T Consensus        14 ~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~   93 (362)
T 3pg1_A           14 IAELHAMQSPYTVQRFISSGSYGAVCAGVDSEGIPVAIKRVFNTVSDGRTVNILSDSFLCKRVLREIRLLNHFHHPNILG   93 (362)
T ss_dssp             HHHHHHTTCSCEEEEEEEEETTEEEEEEECTTSCEEEEEEECEECCTTSCEEGGGSHHHHHHHHHHHHHHHHCCCTTBCC
T ss_pred             HHHHHHhccceEEeEEeccCCCEEEEEEECCCCCeEEEEeccccCCccchhhhhhhhhHHHHHHHHHHHHHhCCCcCccc
Confidence            345667779999999999999999999998889999999875321           223477899999999999999999


Q ss_pred             eeeEEEEC-----CEEEEEEecCCC----------CCCCHHHHHHHHHHHH-------------hccCCCcEEEcCCCcE
Q 047066          165 LLGCCLET-----EVPLLVNEFVKL----------PTISWEVRIRIAAETA-------------EDIKSINILLDDNYTT  216 (256)
Q Consensus       165 l~~~~~~~-----~~~~lv~e~~~~----------~~l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~  216 (256)
                      +++++...     ...++||||+.+          +.+++.....++.|++             +||||+|||++.++.+
T Consensus        94 ~~~~~~~~~~~~~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dlkp~NIl~~~~~~~  173 (362)
T 3pg1_A           94 LRDIFVHFEEPAMHKLYLVTELMRTDLAQVIHDQRIVISPQHIQYFMYHILLGLHVLHEAGVVHRDLHPGNILLADNNDI  173 (362)
T ss_dssp             CSEEEEECCTTTCCEEEEEEECCSEEHHHHHHCTTSCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTCCE
T ss_pred             eeeeEEeccCCCcceEEEEEccCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHCcCEecCCChHHEEEcCCCCE
Confidence            99999652     368999999975          3467777777777766             5999999999999999


Q ss_pred             EEEecCCceecCCCCceeeeeeeecccc----cccc-cCCCCCCC
Q 047066          217 KVCDFGASKLVPIDETQLSTMVQGTLGY----YLHT-SQGTLNKE  256 (256)
Q Consensus       217 ki~DFGla~~~~~~~~~~~~~~~Gt~~y----~~~~-~~~t~ksD  256 (256)
                      ||+|||+++.......  .....||+.|    .+.+ ..++.++|
T Consensus       174 kl~Dfg~~~~~~~~~~--~~~~~~t~~y~aPE~~~~~~~~~~~~D  216 (362)
T 3pg1_A          174 TICDFNLAREDTADAN--KTHYVTHRWYRAPELVMQFKGFTKLVD  216 (362)
T ss_dssp             EECCTTC-----------------CGGGCCHHHHTTCTTCCTHHH
T ss_pred             EEEecCcccccccccc--cceecccceecCcHHhcCCCCCCcHhH
Confidence            9999999986543322  2345689998    2333 56676665

>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*

Probab=99.87  E-value=2e-22  Score=170.96  Aligned_cols=151  Identities=21%  Similarity=0.223  Sum_probs=120.6

Q ss_pred             cCCCcccceeeeeCceEEEEEEE-CCCcEEEEEEecccChhHHHHHHHHHHHHHhC-CCCcccceeeEEEECCEEEEEEe
Q 047066          103 TNNYAYDRMIGRGGYGTVFLGSL-SDNKAIAIKKSRIVYQSQIEQCINKVVVLSQI-NHRNVVGLLGCCLETEVPLLVNE  180 (256)
Q Consensus       103 ~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~lv~e  180 (256)
                      .++|++.+.||+|+||.||+|.. .+++.||+|.+.....  .+.+.+|+.+++.+ +||||+++++++...+..++|||
T Consensus         8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~~~~lv~e   85 (330)
T 2izr_A            8 GPNFRVGKKIGCGNFGELRLGKNLYTNEYVAIKLEPMKSR--APQLHLEYRFYKQLGSGDGIPQVYYFGPCGKYNAMVLE   85 (330)
T ss_dssp             TTTEEEEEECCC-CTTSEEEEEETTTTEEEEEEEEETTCS--SCCHHHHHHHHHHHCSCTTSCCEEEEEEETTEEEEEEE
T ss_pred             cCCeEEEEEeeccCCceEEEEEECCCCcEEEEEEeccccc--hHHHHHHHHHHHHhhCCCCCCEEEEEEecCCccEEEEE
Confidence            46899999999999999999996 4789999998764332  24578999999999 99999999999999999999999


Q ss_pred             cCCCC-----------CCCHHHHHHHHHHHH-------------hccCCCcEEEcCCCc-----EEEEecCCceecCCCC
Q 047066          181 FVKLP-----------TISWEVRIRIAAETA-------------EDIKSINILLDDNYT-----TKVCDFGASKLVPIDE  231 (256)
Q Consensus       181 ~~~~~-----------~l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~-----~ki~DFGla~~~~~~~  231 (256)
                      |+ ++           .+++.....++.|++             |||||+|||++.++.     +||+|||+|+.+....
T Consensus        86 ~~-~~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~iiHrDlkp~Nill~~~~~~~~~~~kl~DFg~a~~~~~~~  164 (330)
T 2izr_A           86 LL-GPSLEDLFDLCDRTFSLKTVLMIAIQLISRMEYVHSKNLIYRDVKPENFLIGRPGNKTQQVIHIIDFALAKEYIDPE  164 (330)
T ss_dssp             CC-CCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECCGGGTCTTSEEECCCTTCEESBCTT
T ss_pred             eC-CCCHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHHHeeeccCCCCCCceEEEEEcccceeeecCC
Confidence            99 53           456666677777766             699999999998887     9999999999875443


Q ss_pred             cee------eeeeeecccc----cccccCCCCCCC
Q 047066          232 TQL------STMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       232 ~~~------~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      ...      .....||+.|    .+.+..++.++|
T Consensus       165 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~D  199 (330)
T 2izr_A          165 TKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDD  199 (330)
T ss_dssp             TCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHH
T ss_pred             CCccccccccCCcCCCccccChHHHcCCCCCchhH
Confidence            221      2345799999    555566666655

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}

Probab=99.87  E-value=4.2e-23  Score=177.94  Aligned_cols=157  Identities=20%  Similarity=0.279  Sum_probs=121.1

Q ss_pred             HhhcCCCcccceeeeeCceEEEEEEEC------CCcEEEEEEeccc-ChhHHHHHHHHHHHHHhCCCCcccceeeEEEEC
Q 047066          100 KIATNNYAYDRMIGRGGYGTVFLGSLS------DNKAIAIKKSRIV-YQSQIEQCINKVVVLSQINHRNVVGLLGCCLET  172 (256)
Q Consensus       100 ~~~~~~~~~~~~lg~G~~g~V~~~~~~------~~~~vavK~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~  172 (256)
                      ++..++|++.+.||+|+||.||+|.+.      ++..||+|.++.. .......+.+|+.+++.++||||+++++++...
T Consensus        67 ~~~~~~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~  146 (367)
T 3l9p_A           67 EVPRKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQS  146 (367)
T ss_dssp             BCCGGGEEEEEECCCCSSSCEEEEEECC-----CCEEEEEEECCSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSS
T ss_pred             hcCHhHeEEeeEeeeCCCEEEEEEEEccCCCCCcceeEEEEecccccChhhHHHHHHHHHHHHhCCCCCCCeEEEEEecC
Confidence            455678999999999999999999843      4668999998654 344556789999999999999999999999999


Q ss_pred             CEEEEEEecCCCCC-----------------CCHHHHHHHHHHHH-------------hccCCCcEEEcCCC---cEEEE
Q 047066          173 EVPLLVNEFVKLPT-----------------ISWEVRIRIAAETA-------------EDIKSINILLDDNY---TTKVC  219 (256)
Q Consensus       173 ~~~~lv~e~~~~~~-----------------l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~---~~ki~  219 (256)
                      +..++||||+++++                 +++...+.++.|++             |||||+|||++.++   .+||+
T Consensus       147 ~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~~~~~~~kL~  226 (367)
T 3l9p_A          147 LPRFILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEENHFIHRDIAARNCLLTCPGPGRVAKIG  226 (367)
T ss_dssp             SSCEEEEECCTTEEHHHHHHHHSCCSSSCCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEESCSSTTCCEEEC
T ss_pred             CCCEEEEEeCCCCCHHHHHHhhccccCccccccHHHHHHHHHHHHHHHHHHHhCCeeCCCCChhhEEEecCCCCceEEEC
Confidence            99999999998855                 44555566666665             69999999999554   59999


Q ss_pred             ecCCceecCCCCc-eeeeeeeecccc----cccccCCCCCCC
Q 047066          220 DFGASKLVPIDET-QLSTMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       220 DFGla~~~~~~~~-~~~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      |||+|+.+..... .......||+.|    .+.++.++.++|
T Consensus       227 DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~D  268 (367)
T 3l9p_A          227 DFGMARDIYRAGYYRKGGCAMLPVKWMPPEAFMEGIFTSKTD  268 (367)
T ss_dssp             CCHHHHHHHHHSSCTTCCGGGSCGGGCCHHHHHHCCCCHHHH
T ss_pred             CCccccccccccccccCCCcCCcccEECHHHhcCCCCCcHHH
Confidence            9999986532211 112234578888    455666776665

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*

Probab=99.87  E-value=4.8e-22  Score=167.00  Aligned_cols=153  Identities=22%  Similarity=0.371  Sum_probs=110.3

Q ss_pred             cCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEeccc---ChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEE
Q 047066          103 TNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIV---YQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLV  178 (256)
Q Consensus       103 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv  178 (256)
                      .++|++.+.||+|+||.||+|... ++..||+|.+...   .....+.+.+|+.+++.++||||+++++++...+..+++
T Consensus        31 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv  110 (310)
T 2wqm_A           31 LANFRIEKKIGRGQFSEVYRAACLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIKYYASFIEDNELNIV  110 (310)
T ss_dssp             GGGEEEEEEEECC--CEEEEEEETTTCCEEEEEEECTTSSCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEE
T ss_pred             ccceEEEEeecCCCCceEEEEEEcCCCceEEEEeeehhhccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCcEEEE
Confidence            357999999999999999999974 7899999988642   344567889999999999999999999999999999999


Q ss_pred             EecCCCCCC--------------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCC
Q 047066          179 NEFVKLPTI--------------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDE  231 (256)
Q Consensus       179 ~e~~~~~~l--------------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~  231 (256)
                      |||+++++|              +......++.+++             +||+|+||+++.++.+||+|||+++......
T Consensus       111 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~i~H~dl~p~NIl~~~~~~~kl~Dfg~~~~~~~~~  190 (310)
T 2wqm_A          111 LELADAGDLSRMIKHFKKQKRLIPERTVWKYFVQLCSALEHMHSRRVMHRDIKPANVFITATGVVKLGDLGLGRFFSSKT  190 (310)
T ss_dssp             EECCCSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTSCEEECCC----------
T ss_pred             EecCCCCCHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHhhCCeeCCCCcHHHEEEcCCCCEEEEeccceeeecCCC
Confidence            999998665              4444455666655             5999999999999999999999998765432


Q ss_pred             ceeeeeeeecccc----cccccCCCCCCC
Q 047066          232 TQLSTMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       232 ~~~~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      .. .....||+.|    .+.+..++.++|
T Consensus       191 ~~-~~~~~~~~~y~aPE~~~~~~~~~~~D  218 (310)
T 2wqm_A          191 TA-AHSLVGTPYYMSPERIHENGYNFKSD  218 (310)
T ss_dssp             ---------CCSSCCHHHHTTCCCCHHHH
T ss_pred             cc-ccccCCCeeEeChHHhCCCCCCchhh
Confidence            22 2334588888    444555666554

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A

Probab=99.87  E-value=3e-22  Score=169.80  Aligned_cols=143  Identities=22%  Similarity=0.243  Sum_probs=103.2

Q ss_pred             ceeeeeCceEEEEEEEC-CCcEEEEEEecccChhHHHHHHHHHHHHHhCC-CCcccceeeEEEECCEEEEEEecCCCCCC
Q 047066          110 RMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVYQSQIEQCINKVVVLSQIN-HRNVVGLLGCCLETEVPLLVNEFVKLPTI  187 (256)
Q Consensus       110 ~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~l~~~~~~~~~~~lv~e~~~~~~l  187 (256)
                      +.||+|+||.||+|..+ +++.||+|.+...   ....+.+|+.+++.++ ||||+++++++.+.+..++||||+++++|
T Consensus        17 ~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~---~~~~~~~e~~~l~~l~~h~niv~~~~~~~~~~~~~lv~e~~~~~~L   93 (325)
T 3kn6_A           17 KPLGEGSFSICRKCVHKKSNQAFAVKIISKR---MEANTQKEITALKLCEGHPNIVKLHEVFHDQLHTFLVMELLNGGEL   93 (325)
T ss_dssp             CCSEEETTEEEEEEEETTTCCEEEEEEEEGG---GHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEECCCCSCBH
T ss_pred             CccccCCCeEEEEEEECCCCCEEEEEEEChh---hhhhHHHHHHHHHHhcCCCCeeEEEEEEEcCCEEEEEEEccCCCcH
Confidence            68999999999999975 6889999988643   3356778999999996 99999999999999999999999988664


Q ss_pred             ----------CHHHHHHHHHHHH-------------hccCCCcEEEcCCC---cEEEEecCCceecCCCCceeeeeeeec
Q 047066          188 ----------SWEVRIRIAAETA-------------EDIKSINILLDDNY---TTKVCDFGASKLVPIDETQLSTMVQGT  241 (256)
Q Consensus       188 ----------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~---~~ki~DFGla~~~~~~~~~~~~~~~Gt  241 (256)
                                ++.....++.|++             +||||+|||++.++   .+||+|||+++........ ....+||
T Consensus        94 ~~~l~~~~~~~~~~~~~i~~qi~~~l~~LH~~~ivH~Dlkp~NIll~~~~~~~~~kl~Dfg~a~~~~~~~~~-~~~~~~t  172 (325)
T 3kn6_A           94 FERIKKKKHFSETEASYIMRKLVSAVSHMHDVGVVHRDLKPENLLFTDENDNLEIKIIDFGFARLKPPDNQP-LKTPCFT  172 (325)
T ss_dssp             HHHHHHCSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEEEC----CEEEECCCTTCEECCC------------
T ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCHHHEEEecCCCcccEEEeccccceecCCCCCc-ccccCCC
Confidence                      5566666666665             69999999997665   8999999999876543322 3345689


Q ss_pred             ccc----cccccCCCCCCC
Q 047066          242 LGY----YLHTSQGTLNKE  256 (256)
Q Consensus       242 ~~y----~~~~~~~t~ksD  256 (256)
                      +.|    .+.+..++.++|
T Consensus       173 ~~y~aPE~~~~~~~~~~~D  191 (325)
T 3kn6_A          173 LHYAAPELLNQNGYDESCD  191 (325)
T ss_dssp             -----------CCCCHHHH
T ss_pred             cCccCHHHhcCCCCCCccc
Confidence            999    455556666655

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}

Probab=99.87  E-value=9.9e-23  Score=186.55  Aligned_cols=157  Identities=20%  Similarity=0.320  Sum_probs=117.0

Q ss_pred             HHhhcCCCcccc-eeeeeCceEEEEEEEC---CCcEEEEEEecccC-hhHHHHHHHHHHHHHhCCCCcccceeeEEEECC
Q 047066           99 LKIATNNYAYDR-MIGRGGYGTVFLGSLS---DNKAIAIKKSRIVY-QSQIEQCINKVVVLSQINHRNVVGLLGCCLETE  173 (256)
Q Consensus        99 ~~~~~~~~~~~~-~lg~G~~g~V~~~~~~---~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~  173 (256)
                      +.+..+++.+.+ .||+|+||.||+|.++   ++..||||.++... ....+.+.+|+.+++.++||||+++++++.. +
T Consensus       330 ~~~~~~~~~~~~~~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~il~~l~hpniv~l~~~~~~-~  408 (613)
T 2ozo_A          330 LFLKRDNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQA-E  408 (613)
T ss_dssp             SBCCTTSEEEEEEEEEECSSSEEEEEEEECSSCEEEEEEEECCCCCSSTTHHHHHHHHHHHTTCCCTTBCCEEEEEES-S
T ss_pred             eeccccceeEcCcEEecCCCcEEEEEEEecCCCcEEEEEEEcCCCCChHHHHHHHHHHHHHHhCCCCCEeeEEEEecc-C
Confidence            334445555555 7999999999999864   45679999987543 4456889999999999999999999999976 5


Q ss_pred             EEEEEEecCCCCCC-----------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCC
Q 047066          174 VPLLVNEFVKLPTI-----------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPI  229 (256)
Q Consensus       174 ~~~lv~e~~~~~~l-----------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~  229 (256)
                      ..++||||+.+|+|           ++.....++.|++             |||||+|||++.++.+||+|||+|+.+..
T Consensus       409 ~~~lv~E~~~~g~L~~~l~~~~~~l~~~~~~~i~~qi~~~L~~LH~~~iiHrDlkp~NILl~~~~~vkL~DFGla~~~~~  488 (613)
T 2ozo_A          409 ALMLVMEMAGGGPLHKFLVGKREEIPVSNVAELLHQVSMGMKYLEEKNFVHRNLAARNVLLVNRHYAKISDFGLSKALGA  488 (613)
T ss_dssp             SEEEEEECCTTCBHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEEETTEEEECCCSTTTTCC-
T ss_pred             CeEEEEEeCCCCcHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHCCEEcCcCCHHHEEEcCCCcEEEeeccCcccccC
Confidence            68999999988654           5566667777765             69999999999999999999999987654


Q ss_pred             CCceee--eeeeecccc----cccccCCCCCCC
Q 047066          230 DETQLS--TMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       230 ~~~~~~--~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      +.....  ....+|+.|    .+.++.++.++|
T Consensus       489 ~~~~~~~~~~~~~~~~y~APE~~~~~~~~~~sD  521 (613)
T 2ozo_A          489 DDSYYTARSAGKWPLKWYAPECINFRKFSSRSD  521 (613)
T ss_dssp             -------------CCTTSCHHHHHHCCCCHHHH
T ss_pred             CCceeeeccCCCCccceeCHhhhcCCCCCcHHH
Confidence            332222  223466788    555677777766

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...

Probab=99.87  E-value=1.8e-22  Score=169.82  Aligned_cols=164  Identities=23%  Similarity=0.395  Sum_probs=128.1

Q ss_pred             ccChHHHHhhcCCCcccceeeeeCceEEEEEEE------CCCcEEEEEEecccC-hhHHHHHHHHHHHHHhC-CCCcccc
Q 047066           93 IFTAGELKIATNNYAYDRMIGRGGYGTVFLGSL------SDNKAIAIKKSRIVY-QSQIEQCINKVVVLSQI-NHRNVVG  164 (256)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~------~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l-~h~niv~  164 (256)
                      .+...++.+..++|++.+.||+|+||.||+|..      .+++.||+|.+.... ....+.+.+|+.++..+ +||||++
T Consensus        16 ~~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~   95 (316)
T 2xir_A           16 PYDASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVN   95 (316)
T ss_dssp             CCCHHHHBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCC
T ss_pred             cccccceecchhheeeeeEEcCCCceeEEEEEEecCCccccceEEEEEecccCCCcHHHHHHHHHHHHHHhcccCCCeee
Confidence            455677888889999999999999999999984      246789999986543 44557899999999999 7999999


Q ss_pred             eeeEEEECC-EEEEEEecCCCCCC--------------------------CHHHHHHHHHHHH-------------hccC
Q 047066          165 LLGCCLETE-VPLLVNEFVKLPTI--------------------------SWEVRIRIAAETA-------------EDIK  204 (256)
Q Consensus       165 l~~~~~~~~-~~~lv~e~~~~~~l--------------------------~~~~~~~~~~~i~-------------rdlk  204 (256)
                      +++++...+ ..+++|||+++++|                          ++.....++.+++             +|||
T Consensus        96 ~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~i~H~dik  175 (316)
T 2xir_A           96 LLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRKCIHRDLA  175 (316)
T ss_dssp             EEEEECCTTSCCEEEEECCTTEEHHHHHHTCTTSEECC-------CTTCEEHHHHHHHHHHHHHHHHHHHHTTCCCSCCS
T ss_pred             EEEEEecCCCceEEEEEcCCCCcHHHHHHhcccccccccccchhhhccccCHHHHHHHHHHHHHHHHHHHhCCcccccCc
Confidence            999998754 58999999987543                          4455555666655             6999


Q ss_pred             CCcEEEcCCCcEEEEecCCceecCCCCce-eeeeeeecccc----cccccCCCCCCC
Q 047066          205 SINILLDDNYTTKVCDFGASKLVPIDETQ-LSTMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       205 ~~NiLi~~~~~~ki~DFGla~~~~~~~~~-~~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      |+||+++.++.+||+|||+++........ ......||+.|    .+.+..++.++|
T Consensus       176 p~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~D  232 (316)
T 2xir_A          176 ARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSD  232 (316)
T ss_dssp             GGGEEECGGGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHHHCCCCHHHH
T ss_pred             cceEEECCCCCEEECCCccccccccCccceeccCCCcceeecCchhhccccccchhH
Confidence            99999999999999999999877544332 23345688888    444566666655

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*

Probab=99.87  E-value=1.7e-22  Score=180.23  Aligned_cols=152  Identities=21%  Similarity=0.275  Sum_probs=120.6

Q ss_pred             cCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEeccc--ChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEE
Q 047066          103 TNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIV--YQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVN  179 (256)
Q Consensus       103 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~  179 (256)
                      .++|++.+.||+|+||.||+|..+ +++.||+|.+...  .......+.+|+.+++.++||||+++++++...+..++||
T Consensus        21 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~  100 (486)
T 3mwu_A           21 AERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILEDSSSFYIVG  100 (486)
T ss_dssp             HHHEEEEEEEECCSSSEEEEEEETTTCCEEEEEEEEHHHHBCSCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             hcceEEeEEEeecCCEEEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHHHhCCCCCcCeEEEEEEcCCEEEEEE
Confidence            367999999999999999999975 6889999987532  2234577899999999999999999999999999999999


Q ss_pred             ecCCCCCC----------CHHHHHHHHHHHH-------------hccCCCcEEEc---CCCcEEEEecCCceecCCCCce
Q 047066          180 EFVKLPTI----------SWEVRIRIAAETA-------------EDIKSINILLD---DNYTTKVCDFGASKLVPIDETQ  233 (256)
Q Consensus       180 e~~~~~~l----------~~~~~~~~~~~i~-------------rdlk~~NiLi~---~~~~~ki~DFGla~~~~~~~~~  233 (256)
                      ||+.+++|          ++.....++.|++             |||||+|||++   .++.+||+|||+|+....... 
T Consensus       101 e~~~~~~L~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~~~~~-  179 (486)
T 3mwu_A          101 ELYTGGELFDEIIKRKRFSEHDAARIIKQVFSGITYMHKHNIVHRDLKPENILLESKEKDCDIKIIDFGLSTCFQQNTK-  179 (486)
T ss_dssp             CCCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEESSSSTTCCEEECSCSCTTTBCCC---
T ss_pred             EcCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeEeccCchHHEEEecCCCCCCEEEEECCcCeECCCCCc-
Confidence            99998765          5555566666655             69999999995   456899999999987654322 


Q ss_pred             eeeeeeecccc---cccccCCCCCCC
Q 047066          234 LSTMVQGTLGY---YLHTSQGTLNKE  256 (256)
Q Consensus       234 ~~~~~~Gt~~y---~~~~~~~t~ksD  256 (256)
                       .....||+.|   ++..+.++.++|
T Consensus       180 -~~~~~gt~~y~aPE~~~~~~~~~~D  204 (486)
T 3mwu_A          180 -MKDRIGTAYYIAPEVLRGTYDEKCD  204 (486)
T ss_dssp             ---CCTTGGGGCCGGGGGSCCCHHHH
T ss_pred             -cCCCcCCCCCCCHHHhCCCCCchhh
Confidence             2334699999   555566776665

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A*

Probab=99.87  E-value=7.8e-23  Score=169.99  Aligned_cols=150  Identities=20%  Similarity=0.341  Sum_probs=119.2

Q ss_pred             hcCCCcccceeeeeCceEEEEEEEC-CC-------cEEEEEEecccChhHHHHHHHHHHHHHhCCCCcccceeeEEEECC
Q 047066          102 ATNNYAYDRMIGRGGYGTVFLGSLS-DN-------KAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLETE  173 (256)
Q Consensus       102 ~~~~~~~~~~lg~G~~g~V~~~~~~-~~-------~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~  173 (256)
                      ..++|.+.+.||+|+||.||+|... ++       ..||+|.+........+.+.+|+.+++.++||||+++++++...+
T Consensus         6 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~   85 (289)
T 4fvq_A            6 RNEDLIFNESLGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKAHRNYSESFFEAASMMSKLSHKHLVLNYGVCVCGD   85 (289)
T ss_dssp             CGGGEEEEEEEEEETTEEEEEEEEEEECGGGCEEEEEEEEEEECGGGGGGHHHHHHHHHHHHTSCCTTBCCEEEEECCTT
T ss_pred             chhHeeeeeeeccCCCceEEEEEEecccccccccchhhhhhhcccccHHHHHHHHHHHHHHHhCCCCCEeEEEEEEEeCC
Confidence            3468999999999999999999864 23       479999987666666788999999999999999999999999999


Q ss_pred             EEEEEEecCCCCCC-----------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCc--------EEEEec
Q 047066          174 VPLLVNEFVKLPTI-----------SWEVRIRIAAETA-------------EDIKSINILLDDNYT--------TKVCDF  221 (256)
Q Consensus       174 ~~~lv~e~~~~~~l-----------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~--------~ki~DF  221 (256)
                      ..+++|||+++++|           +......++.|++             +||||+|||++.++.        +||+||
T Consensus        86 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~ivH~Dlkp~NIll~~~~~~~~~~~~~~kl~Df  165 (289)
T 4fvq_A           86 ENILVQEFVKFGSLDTYLKKNKNCINILWKLEVAKQLAAAMHFLEENTLIHGNVCAKNILLIREEDRKTGNPPFIKLSDP  165 (289)
T ss_dssp             CCEEEEECCTTCBHHHHHHHTGGGCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEEEECCBGGGTBCCEEEECCC
T ss_pred             CCEEEEECCCCCCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHhhCCeECCCcCcceEEEecCCcccccccceeeeccC
Confidence            99999999998664           4555556666655             699999999998886        999999


Q ss_pred             CCceecCCCCceeeeeeeecccc----cccc-cCCCCCCC
Q 047066          222 GASKLVPIDETQLSTMVQGTLGY----YLHT-SQGTLNKE  256 (256)
Q Consensus       222 Gla~~~~~~~~~~~~~~~Gt~~y----~~~~-~~~t~ksD  256 (256)
                      |++......     ....||+.|    .+.+ ..++.++|
T Consensus       166 g~~~~~~~~-----~~~~~~~~y~aPE~~~~~~~~~~~~D  200 (289)
T 4fvq_A          166 GISITVLPK-----DILQERIPWVPPECIENPKNLNLATD  200 (289)
T ss_dssp             CSCTTTSCH-----HHHHHTTTTSCHHHHHCGGGCCHHHH
T ss_pred             cccccccCc-----cccCCcCcccCHHHhCCCCCCCchhH
Confidence            999765322     223478888    2333 55666554

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0

Probab=99.87  E-value=3.4e-22  Score=164.60  Aligned_cols=151  Identities=24%  Similarity=0.370  Sum_probs=108.8

Q ss_pred             hcCCCcccceeeeeCceEEEEEEECCCcEEEEEEecccC----hhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEE
Q 047066          102 ATNNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVY----QSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLL  177 (256)
Q Consensus       102 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~----~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~l  177 (256)
                      ..++|++.+.||+|+||.||+|.. .+..+|+|......    ....+.+.+|+.+++.++||||+++++++...+..++
T Consensus         5 ~~~~~~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l   83 (271)
T 3dtc_A            5 DFAELTLEEIIGIGGFGKVYRAFW-IGDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHPNIIALRGVCLKEPNLCL   83 (271)
T ss_dssp             CTTSEEEEEEEEEETTEEEEEEEE-TTEEEEEEEC----------CHHHHHHHHHHHHHCCCTTBCCEEEEECCC--CEE
T ss_pred             chhheeeeeeeccCCCeEEEEEEE-cCCeEEEEEEecCCcccHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEecCCceEE
Confidence            456899999999999999999998 48899999876432    2234678999999999999999999999999999999


Q ss_pred             EEecCCCCC---------CCHHHHHHHHHHH----------------HhccCCCcEEEcC--------CCcEEEEecCCc
Q 047066          178 VNEFVKLPT---------ISWEVRIRIAAET----------------AEDIKSINILLDD--------NYTTKVCDFGAS  224 (256)
Q Consensus       178 v~e~~~~~~---------l~~~~~~~~~~~i----------------~rdlk~~NiLi~~--------~~~~ki~DFGla  224 (256)
                      +|||+++++         +++.....++.++                |+||||+|||++.        ++.+||+|||++
T Consensus        84 v~e~~~~~~L~~~~~~~~~~~~~~~~i~~~l~~~l~~lH~~~~~~i~H~dikp~Nil~~~~~~~~~~~~~~~kl~Dfg~~  163 (271)
T 3dtc_A           84 VMEFARGGPLNRVLSGKRIPPDILVNWAVQIARGMNYLHDEAIVPIIHRDLKSSNILILQKVENGDLSNKILKITDFGLA  163 (271)
T ss_dssp             EEECCTTEEHHHHHTSSCCCHHHHHHHHHHHHHHHHHHHHSSSSCCCCSCCSGGGEEESSCCSSSCCSSCCEEECCCCC-
T ss_pred             EEEcCCCCCHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhCCCCceeecCCchHHEEEecccccccccCcceEEccCCcc
Confidence            999998754         4555555555554                4799999999986        678999999999


Q ss_pred             eecCCCCceeeeeeeecccc----cccccCCCCCCC
Q 047066          225 KLVPIDETQLSTMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       225 ~~~~~~~~~~~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      +.......   ....||+.|    .+.+..++.++|
T Consensus       164 ~~~~~~~~---~~~~~~~~y~aPE~~~~~~~~~~~D  196 (271)
T 3dtc_A          164 REWHRTTK---MSAAGAYAWMAPEVIRASMFSKGSD  196 (271)
T ss_dssp             ---------------CCGGGSCHHHHHHCCCSHHHH
T ss_pred             cccccccc---cCCCCccceeCHHHhccCCCCchhh
Confidence            87654322   234689999    445556666655

>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A

Probab=99.87  E-value=4.5e-22  Score=171.13  Aligned_cols=139  Identities=22%  Similarity=0.286  Sum_probs=105.9

Q ss_pred             cCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEec
Q 047066          103 TNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEF  181 (256)
Q Consensus       103 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~  181 (256)
                      .++|.+.+.||+|+||.||++... +++.||+|.+..... ..+.+.+|+.+++.++||||+++++++.+.+..++||||
T Consensus        19 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~   97 (361)
T 3uc3_A           19 SDRYDFVKDIGSGNFGVARLMRDKLTKELVAVKYIERGAA-IDENVQREIINHRSLRHPNIVRFKEVILTPTHLAIIMEY   97 (361)
T ss_dssp             TTTEEEEEEESSSTTSSEEEEEETTTCCEEEEEEEESSTT-SCHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEEC
T ss_pred             CCcEEEEEEeccCCCEEEEEEEECCCCcEEEEEEEecCcc-ccHHHHHHHHHHHhCCCCCCCcEEEEEeeCCEEEEEEEe
Confidence            468999999999999999999976 788999998865432 225688999999999999999999999999999999999


Q ss_pred             CCCCCC----------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCc--EEEEecCCceecCCCCceeee
Q 047066          182 VKLPTI----------SWEVRIRIAAETA-------------EDIKSINILLDDNYT--TKVCDFGASKLVPIDETQLST  236 (256)
Q Consensus       182 ~~~~~l----------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~--~ki~DFGla~~~~~~~~~~~~  236 (256)
                      +++++|          +......++.|++             |||||+|||++.++.  +||+|||+|+......  ...
T Consensus        98 ~~~~~L~~~l~~~~~~~~~~~~~i~~ql~~~L~~LH~~~ivH~Dlkp~Nill~~~~~~~~kl~Dfg~a~~~~~~~--~~~  175 (361)
T 3uc3_A           98 ASGGELYERICNAGRFSEDEARFFFQQLLSGVSYCHSMQICHRDLKLENTLLDGSPAPRLKICDFGYSKSSVLHS--QPK  175 (361)
T ss_dssp             CCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTCCSCCCCGGGEEECSSSSCCEEECCCCCC------------
T ss_pred             CCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEEcCCCCceEEEeecCccccccccC--CCC
Confidence            988665          4455555666554             699999999987765  9999999998543222  123


Q ss_pred             eeeecccc
Q 047066          237 MVQGTLGY  244 (256)
Q Consensus       237 ~~~Gt~~y  244 (256)
                      ...||+.|
T Consensus       176 ~~~gt~~y  183 (361)
T 3uc3_A          176 STVGTPAY  183 (361)
T ss_dssp             -----CTT
T ss_pred             CCcCCCCc
Confidence            34699999

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*

Probab=99.87  E-value=3.7e-22  Score=166.77  Aligned_cols=139  Identities=21%  Similarity=0.361  Sum_probs=108.7

Q ss_pred             hcCCCcccceeeeeCceEEEEEEECCCcEEEEEEecccChhHHHHHHHHHHHHHh--CCCCcccceeeEEEE----CCEE
Q 047066          102 ATNNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQ--INHRNVVGLLGCCLE----TEVP  175 (256)
Q Consensus       102 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~--l~h~niv~l~~~~~~----~~~~  175 (256)
                      ..++|++.+.||+|+||.||+|.. +++.||+|.+...   ....+..|.+++..  ++||||+++++++..    .+..
T Consensus         6 ~~~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~---~~~~~~~e~~~~~~~~l~h~niv~~~~~~~~~~~~~~~~   81 (301)
T 3q4u_A            6 VARDITLLECVGKGRYGEVWRGSW-QGENVAVKIFSSR---DEKSWFRETELYNTVMLRHENILGFIASDMTSRHSSTQL   81 (301)
T ss_dssp             CGGGCEEEEEEEECSSEEEEEEEE-TTEEEEEEEECGG---GHHHHHHHHHHHHHTCCCCTTBCCEEEEEEEEETTEEEE
T ss_pred             ccCcEEEEEeeccCCCcEEEEEEE-CCEEEEEEEeccc---cchhhHHHHHHHHHhhccCcCeeeEEEeeccccCCCcee
Confidence            346899999999999999999998 7889999988643   33556677777766  799999999998765    2458


Q ss_pred             EEEEecCCCCCC---------CHHHHHHHHHHH---------------------HhccCCCcEEEcCCCcEEEEecCCce
Q 047066          176 LLVNEFVKLPTI---------SWEVRIRIAAET---------------------AEDIKSINILLDDNYTTKVCDFGASK  225 (256)
Q Consensus       176 ~lv~e~~~~~~l---------~~~~~~~~~~~i---------------------~rdlk~~NiLi~~~~~~ki~DFGla~  225 (256)
                      +++|||+++++|         ++.....++.++                     ||||||+|||++.++.+||+|||+|+
T Consensus        82 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dlkp~Nill~~~~~~kl~Dfg~a~  161 (301)
T 3q4u_A           82 WLITHYHEMGSLYDYLQLTTLDTVSCLRIVLSIASGLAHLHIEIFGTQGKPAIAHRDLKSKNILVKKNGQCCIADLGLAV  161 (301)
T ss_dssp             EEEECCCTTCBHHHHHTTCCBCHHHHHHHHHHHHHHHHHHHSCBCSTTCBCEEECSCCCGGGEEECTTSCEEECCCTTCE
T ss_pred             EEehhhccCCCHHHHHhhcccCHHHHHHHHHHHHHHHHHHHHhhhhccCCCCeecCCCChHhEEEcCCCCEEEeeCCCee
Confidence            999999998765         455555555443                     36999999999999999999999998


Q ss_pred             ecCCCCcee---eeeeeecccc
Q 047066          226 LVPIDETQL---STMVQGTLGY  244 (256)
Q Consensus       226 ~~~~~~~~~---~~~~~Gt~~y  244 (256)
                      .........   .....||+.|
T Consensus       162 ~~~~~~~~~~~~~~~~~gt~~y  183 (301)
T 3q4u_A          162 MHSQSTNQLDVGNNPRVGTKRY  183 (301)
T ss_dssp             EEETTTTEEECCCCCCCCCGGG
T ss_pred             ecccccccccccccccccccce
Confidence            775544332   1234699999

>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7

Probab=99.87  E-value=1.5e-22  Score=172.89  Aligned_cols=153  Identities=24%  Similarity=0.296  Sum_probs=113.5

Q ss_pred             cCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccChh-----HHHHHHHHHHHHHhCCCCcccceeeEEEECCEEE
Q 047066          103 TNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVYQS-----QIEQCINKVVVLSQINHRNVVGLLGCCLETEVPL  176 (256)
Q Consensus       103 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~-----~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~  176 (256)
                      .++|++.+.||+|+||.||+|... +++.||+|.+......     ..+.+.+|+.+++.++||||+++++++...+..+
T Consensus         9 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~   88 (346)
T 1ua2_A            9 AKRYEKLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGHKSNIS   88 (346)
T ss_dssp             ----CEEEEEEEETTEEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEEEEECCTTCCE
T ss_pred             hcccEEEeEEeecCCEEEEEEEECCCCcEEEEEEEecCCcchhhhhhhHHHHHHHHHHhhCCCCCCCeEEEEEeeCCceE
Confidence            468999999999999999999975 6899999988643211     1246789999999999999999999999999999


Q ss_pred             EEEecCCC----------CCCCHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCce
Q 047066          177 LVNEFVKL----------PTISWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQ  233 (256)
Q Consensus       177 lv~e~~~~----------~~l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~  233 (256)
                      +||||+++          ..+++.....++.+++             +||||+|||++.++.+||+|||+++.+......
T Consensus        89 lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dlkp~Nil~~~~~~~kl~Dfg~a~~~~~~~~~  168 (346)
T 1ua2_A           89 LVFDFMETDLEVIIKDNSLVLTPSHIKAYMLMTLQGLEYLHQHWILHRDLKPNNLLLDENGVLKLADFGLAKSFGSPNRA  168 (346)
T ss_dssp             EEEECCSEEHHHHHTTCCSSCCSSHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTCCEEECCCGGGSTTTSCCCC
T ss_pred             EEEEcCCCCHHHHHHhcCcCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCHHHEEEcCCCCEEEEecccceeccCCccc
Confidence            99999975          2345555555555554             699999999999999999999999876543322


Q ss_pred             eeeeeeecccc----cccc-cCCCCCCC
Q 047066          234 LSTMVQGTLGY----YLHT-SQGTLNKE  256 (256)
Q Consensus       234 ~~~~~~Gt~~y----~~~~-~~~t~ksD  256 (256)
                       .....||+.|    .+.+ ..++.++|
T Consensus       169 -~~~~~~t~~y~aPE~~~~~~~~~~~~D  195 (346)
T 1ua2_A          169 -YTHQVVTRWYRAPELLFGARMYGVGVD  195 (346)
T ss_dssp             -CCCSCCCCTTCCHHHHTTCSCCCHHHH
T ss_pred             -CCcccccccccCchHhhCCCCCCchhh
Confidence             2344689999    2322 33566554

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ...

Probab=99.87  E-value=4.9e-22  Score=164.51  Aligned_cols=152  Identities=26%  Similarity=0.347  Sum_probs=118.6

Q ss_pred             hcCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC---hhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEE
Q 047066          102 ATNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY---QSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLL  177 (256)
Q Consensus       102 ~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~l  177 (256)
                      ..++|++.+.||+|+||.||+|... ++..+|+|.+....   ......+.+|+.+++.++||||+++++++.+.+..++
T Consensus         7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l   86 (279)
T 3fdn_A            7 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDATRVYL   86 (279)
T ss_dssp             CGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEE
T ss_pred             ecccEEEeeEEecCCCeEEEEEEEccCCcEEEEEEEeccccchhhHHHHHHHHHHHHHcCCCCCCcchhheEecCCEEEE
Confidence            3467999999999999999999975 57799999875432   2224678899999999999999999999999999999


Q ss_pred             EEecCCCCCC----------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCcee
Q 047066          178 VNEFVKLPTI----------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQL  234 (256)
Q Consensus       178 v~e~~~~~~l----------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~  234 (256)
                      +|||+++++|          +......++.+++             +||||+|||++.++.+||+|||++.......   
T Consensus        87 v~e~~~~~~l~~~l~~~~~~~~~~~~~~~~qi~~~l~~LH~~~i~H~dlkp~Nili~~~~~~~l~Dfg~~~~~~~~~---  163 (279)
T 3fdn_A           87 ILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSR---  163 (279)
T ss_dssp             EECCCTTEEHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHTTTCEECCCCGGGEEECTTSCEEECSCCEESCC-------
T ss_pred             EEecCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCEecccCChHhEEEcCCCCEEEEeccccccCCccc---
Confidence            9999998554          5555666666655             5999999999999999999999987643322   


Q ss_pred             eeeeeecccc----cccccCCCCCCC
Q 047066          235 STMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       235 ~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      .....||+.|    .+.+..++.++|
T Consensus       164 ~~~~~~~~~y~aPE~~~~~~~~~~~D  189 (279)
T 3fdn_A          164 RTDLCGTLDYLPPEMIEGRMHDEKVD  189 (279)
T ss_dssp             ----CCCCTTCCHHHHTTCCCCTTHH
T ss_pred             ccccCCCCCccCHhHhccCCCCccch
Confidence            2334689998    455566677665

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*

Probab=99.87  E-value=2.9e-22  Score=184.67  Aligned_cols=161  Identities=21%  Similarity=0.309  Sum_probs=121.6

Q ss_pred             ChHHHHhhcCCCcccceeeeeCceEEEEEEECC----CcEEEEEEecccC-hhHHHHHHHHHHHHHhCCCCcccceeeEE
Q 047066           95 TAGELKIATNNYAYDRMIGRGGYGTVFLGSLSD----NKAIAIKKSRIVY-QSQIEQCINKVVVLSQINHRNVVGLLGCC  169 (256)
Q Consensus        95 ~~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~----~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~  169 (256)
                      ....+++..++|++.+.||+|+||.||+|.+..    +..+|+|...... ....+.+.+|+.+++.++||||+++++++
T Consensus       381 ~~~~~~i~~~~y~i~~~LG~G~fG~Vy~a~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~  460 (656)
T 2j0j_A          381 STRDYEIQRERIELGRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVI  460 (656)
T ss_dssp             CGGGTBCCGGGEEEEEEEECCSSCCEEEEEECCSSSCCEEEEEEECSSTTCHHHHHHHHHHHHHHHHCCCTTBCCEEEEE
T ss_pred             cccccccccccEEEeeEEeeCCCEEEEEEEEecCCCccEEEEEEEecccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEE
Confidence            345566777889999999999999999998642    4579999876543 44557899999999999999999999998


Q ss_pred             EECCEEEEEEecCCCCCC-----------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCce
Q 047066          170 LETEVPLLVNEFVKLPTI-----------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASK  225 (256)
Q Consensus       170 ~~~~~~~lv~e~~~~~~l-----------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~  225 (256)
                      . .+..++||||+++++|           ++.....++.|++             |||||+|||++.++.+||+|||+++
T Consensus       461 ~-~~~~~lv~E~~~~g~L~~~l~~~~~~l~~~~~~~i~~qi~~aL~~LH~~givHrDikp~NILl~~~~~vkL~DFG~a~  539 (656)
T 2j0j_A          461 T-ENPVWIIMELCTLGELRSFLQVRKFSLDLASLILYAYQLSTALAYLESKRFVHRDIAARNVLVSSNDCVKLGDFGLSR  539 (656)
T ss_dssp             C-SSSCEEEEECCTTCBHHHHHHHTTTTCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEEETTEEEECCCCCCC
T ss_pred             e-cCceEEEEEcCCCCcHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhCCccccccchHhEEEeCCCCEEEEecCCCe
Confidence            5 4568999999998654           4555556666655             6999999999999999999999999


Q ss_pred             ecCCCCceeeeeeeecccc----cccccCCCCCCC
Q 047066          226 LVPIDETQLSTMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       226 ~~~~~~~~~~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      ..............||+.|    .+.+..++.++|
T Consensus       540 ~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~D  574 (656)
T 2j0j_A          540 YMEDSTYYKASKGKLPIKWMAPESINFRRFTSASD  574 (656)
T ss_dssp             SCCC----------CCGGGCCHHHHHHCCCCHHHH
T ss_pred             ecCCCcceeccCCCCCcceeCHHHhcCCCCCchhh
Confidence            8755443333445577888    445566666655

>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7

Probab=99.87  E-value=5.4e-23  Score=176.44  Aligned_cols=142  Identities=27%  Similarity=0.307  Sum_probs=114.4

Q ss_pred             cCCCcccceeeeeCceEEEEEEE----CCCcEEEEEEecccC----hhHHHHHHHHHHHHHhC-CCCcccceeeEEEECC
Q 047066          103 TNNYAYDRMIGRGGYGTVFLGSL----SDNKAIAIKKSRIVY----QSQIEQCINKVVVLSQI-NHRNVVGLLGCCLETE  173 (256)
Q Consensus       103 ~~~~~~~~~lg~G~~g~V~~~~~----~~~~~vavK~~~~~~----~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~  173 (256)
                      .++|++.+.||+|+||.||+++.    .+++.||+|.++...    ....+.+.+|+.++..+ +||||+++++++...+
T Consensus        53 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~  132 (355)
T 1vzo_A           53 IENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTET  132 (355)
T ss_dssp             GGGEEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEEEETT
T ss_pred             ccceEEEEEeccCCCEEEEEEEEcccCCCCeEEEEEEEeHHHhhhhhhHHHHHHHHHHHHHHccCCCceeEEEEEEeeCc
Confidence            46899999999999999999997    368899999875422    22335577899999999 7999999999999999


Q ss_pred             EEEEEEecCCCCCC----------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCC
Q 047066          174 VPLLVNEFVKLPTI----------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPID  230 (256)
Q Consensus       174 ~~~lv~e~~~~~~l----------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~  230 (256)
                      ..++||||+++++|          ++.....++.|++             |||||+|||++.++.+||+|||+++.+..+
T Consensus       133 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~kl~DfG~a~~~~~~  212 (355)
T 1vzo_A          133 KLHLILDYINGGELFTHLSQRERFTEHEVQIYVGEIVLALEHLHKLGIIYRDIKLENILLDSNGHVVLTDFGLSKEFVAD  212 (355)
T ss_dssp             EEEEEECCCCSCBHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTSCEEESCSSEEEECCGG
T ss_pred             eEEEEeecCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCcEEEeeCCCCeecccC
Confidence            99999999998765          4444455555554             699999999999999999999999876544


Q ss_pred             Cceeeeeeeecccc
Q 047066          231 ETQLSTMVQGTLGY  244 (256)
Q Consensus       231 ~~~~~~~~~Gt~~y  244 (256)
                      ........+||+.|
T Consensus       213 ~~~~~~~~~gt~~y  226 (355)
T 1vzo_A          213 ETERAYDFCGTIEY  226 (355)
T ss_dssp             GGGGGCGGGSCCTT
T ss_pred             CCCcccCcccCcCc
Confidence            33333445699999

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A

Probab=99.87  E-value=5.7e-22  Score=166.90  Aligned_cols=141  Identities=22%  Similarity=0.239  Sum_probs=108.8

Q ss_pred             CCCccc-ceeeeeCceEEEEEEEC-CCcEEEEEEecccChhHHHHHHHHHHHHHhC-CCCcccceeeEEEECCEEEEEEe
Q 047066          104 NNYAYD-RMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVYQSQIEQCINKVVVLSQI-NHRNVVGLLGCCLETEVPLLVNE  180 (256)
Q Consensus       104 ~~~~~~-~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~lv~e  180 (256)
                      +.|.+. +.||+|+||.||+|... +++.||+|.+........+.+.+|+.++.++ +||||+++++++...+..++|||
T Consensus        12 ~~y~i~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~h~~i~~~~~~~~~~~~~~lv~e   91 (316)
T 2ac3_A           12 DVYQLQEDVLGEGAHARVQTCINLITSQEYAVKIIEKQPGHIRSRVFREVEMLYQCQGHRNVLELIEFFEEEDRFYLVFE   91 (316)
T ss_dssp             TSCEECCCCCCCCSSEEEEEEECSSSCCEEEEEEEECCSSCCHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             eeEEecCceecCCceEEEEEEEEcCCCcEEEEEEEeeCcchhHHHHHHHHHHHHHhcCCCCeeeEEEEEeeCCEEEEEEE
Confidence            567774 78999999999999964 7899999998765555567899999999985 79999999999999999999999


Q ss_pred             cCCCCCC----------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCc---EEEEecCCceecCCCCc--
Q 047066          181 FVKLPTI----------SWEVRIRIAAETA-------------EDIKSINILLDDNYT---TKVCDFGASKLVPIDET--  232 (256)
Q Consensus       181 ~~~~~~l----------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~---~ki~DFGla~~~~~~~~--  232 (256)
                      |+++++|          ++.....++.|++             +||||+|||++.++.   +||+|||+++....+..  
T Consensus        92 ~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~dlkp~Nil~~~~~~~~~~kl~Dfg~~~~~~~~~~~~  171 (316)
T 2ac3_A           92 KMRGGSILSHIHKRRHFNELEASVVVQDVASALDFLHNKGIAHRDLKPENILCEHPNQVSPVKICDFDLGSGIKLNGDCS  171 (316)
T ss_dssp             CCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEESCSSSSCSEEECCTTCCC---------
T ss_pred             cCCCCcHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhCCceeCCCCHHHEEEccCCCcCceEEEEccCccccccCCccc
Confidence            9998664          5555556666655             699999999988775   99999999987643211  


Q ss_pred             ----eeeeeeeecccc
Q 047066          233 ----QLSTMVQGTLGY  244 (256)
Q Consensus       233 ----~~~~~~~Gt~~y  244 (256)
                          ......+||+.|
T Consensus       172 ~~~~~~~~~~~gt~~y  187 (316)
T 2ac3_A          172 PISTPELLTPCGSAEY  187 (316)
T ss_dssp             ----------CCSGGG
T ss_pred             cccccccccccCCcCc
Confidence                112234599999

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens}

Probab=99.87  E-value=1.4e-21  Score=164.42  Aligned_cols=153  Identities=20%  Similarity=0.299  Sum_probs=117.7

Q ss_pred             hhcCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEE
Q 047066          101 IATNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVN  179 (256)
Q Consensus       101 ~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~  179 (256)
                      ...++|++.+.||+|+||.||+|... +++.||+|.+....  ..+.+.+|+.+++.++||||+++++++...+..+++|
T Consensus        26 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~--~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~  103 (314)
T 3com_A           26 QPEEVFDVLEKLGEGSYGSVYKAIHKETGQIVAIKQVPVES--DLQEIIKEISIMQQCDSPHVVKYYGSYFKNTDLWIVM  103 (314)
T ss_dssp             ----CEEEEEECC----CEEEEEEETTTCCEEEEEEEETTS--CCHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEE
T ss_pred             cchhhhhhheeeccCCCeEEEEEEECCCCCEEEEEecCchH--HHHHHHHHHHHHHhCCCCCCccEEEEEEeCCEEEEEe
Confidence            35578999999999999999999976 58899999886533  3367889999999999999999999999999999999


Q ss_pred             ecCCCCC-----------CCHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceee
Q 047066          180 EFVKLPT-----------ISWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLS  235 (256)
Q Consensus       180 e~~~~~~-----------l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~  235 (256)
                      ||+++++           +++.....++.+++             +||+|+||+++.++.+||+|||++......... .
T Consensus       104 e~~~~~~L~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~-~  182 (314)
T 3com_A          104 EYCGAGSVSDIIRLRNKTLTEDEIATILQSTLKGLEYLHFMRKIHRDIKAGNILLNTEGHAKLADFGVAGQLTDTMAK-R  182 (314)
T ss_dssp             ECCTTEEHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTCCEEECCCTTCEECBTTBSC-B
T ss_pred             ecCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCCcCCCcCHHHEEECCCCCEEEeecccchhhhhhccc-c
Confidence            9998754           45555566666655             599999999999999999999999876543222 2


Q ss_pred             eeeeecccc----cccccCCCCCCC
Q 047066          236 TMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       236 ~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      ....||+.|    .+.+..++.++|
T Consensus       183 ~~~~~~~~y~aPE~~~~~~~~~~~D  207 (314)
T 3com_A          183 NTVIGTPFWMAPEVIQEIGYNCVAD  207 (314)
T ss_dssp             CCCCSCGGGCCHHHHSSSCBCTTHH
T ss_pred             CccCCCCCccChhhcCCCCCCcccc
Confidence            334589998    555666777766

>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}

Probab=99.87  E-value=6.1e-22  Score=166.29  Aligned_cols=153  Identities=29%  Similarity=0.360  Sum_probs=117.8

Q ss_pred             hcCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC-----hhHHHHHHHHHHHHHhC---CCCcccceeeEEEEC
Q 047066          102 ATNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY-----QSQIEQCINKVVVLSQI---NHRNVVGLLGCCLET  172 (256)
Q Consensus       102 ~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~-----~~~~~~~~~E~~~l~~l---~h~niv~l~~~~~~~  172 (256)
                      ..++|++.+.||+|+||.||+|... +++.||+|.+....     ......+.+|+.+++.+   +||||+++++++...
T Consensus         7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~niv~~~~~~~~~   86 (308)
T 3g33_A            7 ATSRYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGGGGGGGLPISTVREVALLRRLEAFEHPNVVRLMDVCATS   86 (308)
T ss_dssp             ---CCEEEEEECCSSSCCEEEEECTTTCCEEEEEEEEEECCCTTSSCCCHHHHHHHHHHHHHHHHCCTTBCCEEEEEEEC
T ss_pred             cccceEEEEEEecCCCeEEEEEEECCCCcEEEEEEEecccccccccccchhHHHHHHHHHHHhhcCCCCeEEeeeeeecc
Confidence            3578999999999999999999964 68899999875322     11124566787777766   499999999999875


Q ss_pred             C-----EEEEEEecCCC-----------CCCCHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCC
Q 047066          173 E-----VPLLVNEFVKL-----------PTISWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGA  223 (256)
Q Consensus       173 ~-----~~~lv~e~~~~-----------~~l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGl  223 (256)
                      .     ..+++|||+.+           ..+++.....++.|++             +||||+|||++.++.+||+|||+
T Consensus        87 ~~~~~~~~~lv~e~~~~~L~~~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~~ivH~Dlkp~Nil~~~~~~~kl~Dfg~  166 (308)
T 3g33_A           87 RTDREIKVTLVFEHVDQDLRTYLDKAPPPGLPAETIKDLMRQFLRGLDFLHANCIVHRDLKPENILVTSGGTVKLADFGL  166 (308)
T ss_dssp             CSSSEEEEEEEEECCCCBHHHHHHTCCTTCSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCTTTEEECTTSCEEECSCSC
T ss_pred             CCCCceeEEEEehhhhcCHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEEcCCCCEEEeeCcc
Confidence            5     58999999975           2267777777777766             69999999999999999999999


Q ss_pred             ceecCCCCceeeeeeeecccc----cccccCCCCCCC
Q 047066          224 SKLVPIDETQLSTMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       224 a~~~~~~~~~~~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      |+.......  .....||+.|    .+.++.++.++|
T Consensus       167 a~~~~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~D  201 (308)
T 3g33_A          167 ARIYSYQMA--LTPVVVTLWYRAPEVLLQSTYATPVD  201 (308)
T ss_dssp             TTTSTTCCC--SGGGGCCCSSCCHHHHHTSCCCSTHH
T ss_pred             ccccCCCcc--cCCccccccccCchHHcCCCCCchHH
Confidence            987653322  2345689999    555777888776

>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7

Probab=99.87  E-value=5.4e-22  Score=171.00  Aligned_cols=150  Identities=21%  Similarity=0.241  Sum_probs=113.7

Q ss_pred             cCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEeccc--ChhHHHHHHHHHHHHHhCCCCcccceeeEEEECC------
Q 047066          103 TNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIV--YQSQIEQCINKVVVLSQINHRNVVGLLGCCLETE------  173 (256)
Q Consensus       103 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~------  173 (256)
                      .++|++.+.||+|+||.||+|... +++.||+|++...  .....+.+.+|+.+++.++||||+++++++...+      
T Consensus        24 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~~  103 (367)
T 1cm8_A           24 RAVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMRHENVIGLLDVFTPDETLDDFT  103 (367)
T ss_dssp             BSSEEEEEEC------CEEEEEETTTCCEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCBTTBCCCSEEECSCSSTTTCC
T ss_pred             cceEEEeEEeeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCcCCCCceeeEecCCccccCc
Confidence            468999999999999999999975 6899999998543  2344577899999999999999999999998653      


Q ss_pred             EEEEEEecCCC--------CCCCHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCc
Q 047066          174 VPLLVNEFVKL--------PTISWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDET  232 (256)
Q Consensus       174 ~~~lv~e~~~~--------~~l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~  232 (256)
                      ..++||||+.+        +.++......++.|++             |||||+|||++.++.+||+|||+|+.....  
T Consensus       104 ~~~lv~e~~~~~L~~~~~~~~l~~~~~~~~~~qi~~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~--  181 (367)
T 1cm8_A          104 DFYLVMPFMGTDLGKLMKHEKLGEDRIQFLVYQMLKGLRYIHAAGIIHRDLKPGNLAVNEDCELKILDFGLARQADSE--  181 (367)
T ss_dssp             CCEEEEECCSEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCTTCEECCSS--
T ss_pred             eEEEEEecCCCCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCccccCcCHHHEEEcCCCCEEEEeeecccccccc--
Confidence            46999999933        3456666666666655             699999999999999999999999986432  


Q ss_pred             eeeeeeeecccc----cccc-cCCCCCCC
Q 047066          233 QLSTMVQGTLGY----YLHT-SQGTLNKE  256 (256)
Q Consensus       233 ~~~~~~~Gt~~y----~~~~-~~~t~ksD  256 (256)
                        .+...||++|    .+.+ ..++.++|
T Consensus       182 --~~~~~~t~~y~aPE~~~~~~~~~~~~D  208 (367)
T 1cm8_A          182 --MTGYVVTRWYRAPEVILNWMRYTQTVD  208 (367)
T ss_dssp             --CCSSCSCGGGCCTHHHHTTTCCCTTHH
T ss_pred             --cCcCcCCCCcCCHHHHhCCCCCChhhh
Confidence              2334689999    3333 56787776

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ...

Probab=99.87  E-value=2.7e-22  Score=170.09  Aligned_cols=153  Identities=20%  Similarity=0.379  Sum_probs=112.9

Q ss_pred             cCCCcccceeeeeCceEEEEEEEC-CCc----EEEEEEecccC-hhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEE
Q 047066          103 TNNYAYDRMIGRGGYGTVFLGSLS-DNK----AIAIKKSRIVY-QSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPL  176 (256)
Q Consensus       103 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~----~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~  176 (256)
                      .++|++.+.||+|+||.||+|.+. ++.    .||+|.+.... ....+.+.+|+.++++++||||+++++++...+ .+
T Consensus        14 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~-~~   92 (327)
T 3poz_A           14 ETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTST-VQ   92 (327)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEECC----CCEEEEEEEC-------CHHHHHHHHHHHHHCCBTTBCCEEEEEESSS-EE
T ss_pred             HHHcccceEEeeCCCeEEEEEEEcCCCceEEEEEEEeecccccCHHHHHHHHHHHHHHHhCCCCCEeEEEEEEecCC-eE
Confidence            357899999999999999999964 343    46888775432 344578999999999999999999999998765 77


Q ss_pred             EEEecCCCCCC-----------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCc
Q 047066          177 LVNEFVKLPTI-----------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDET  232 (256)
Q Consensus       177 lv~e~~~~~~l-----------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~  232 (256)
                      +++||+.+++|           ++.....++.+++             |||||+|||++.++.+||+|||+|+.......
T Consensus        93 ~v~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~ivH~Dikp~NIll~~~~~~kl~Dfg~a~~~~~~~~  172 (327)
T 3poz_A           93 LITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEK  172 (327)
T ss_dssp             EEEECCTTCBHHHHHHHSTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEEETTEEEECCTTHHHHHTTTCC
T ss_pred             EEEEecCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhhCCeeCCCCChheEEECCCCCEEEccCcceeEccCCcc
Confidence            88999987654           5555666666655             69999999999999999999999988754433


Q ss_pred             ee-eeeeeecccc----cccccCCCCCCC
Q 047066          233 QL-STMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       233 ~~-~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      .. .....||+.|    .+.++.++.++|
T Consensus       173 ~~~~~~~~~t~~y~aPE~~~~~~~~~~~D  201 (327)
T 3poz_A          173 EYHAEGGKVPIKWMALESILHRIYTHQSD  201 (327)
T ss_dssp             -------CCCGGGSCHHHHHHCCCCHHHH
T ss_pred             cccccCCCccccccChHHhccCCCCchhh
Confidence            22 2334578888    555667777665

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}

Probab=99.87  E-value=1.1e-21  Score=165.76  Aligned_cols=160  Identities=23%  Similarity=0.338  Sum_probs=116.8

Q ss_pred             ChHHHHhhcCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccChhHHHHHHHHHHHHHhC-CCCcccceeeEEEE-
Q 047066           95 TAGELKIATNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVYQSQIEQCINKVVVLSQI-NHRNVVGLLGCCLE-  171 (256)
Q Consensus        95 ~~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~-  171 (256)
                      ...++....++|++.+.||+|+||.||+|... +++.||+|.+..... ..+.+.+|+.+++++ +||||+++++++.. 
T Consensus        15 ~~~~l~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~-~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~   93 (326)
T 2x7f_A           15 DLSALRDPAGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTGD-EEEEIKQEINMLKKYSHHRNIATYYGAFIKK   93 (326)
T ss_dssp             -CCCCCCCTTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSS-TTHHHHHHHHHHHHHCCSTTBCCEEEEEEEC
T ss_pred             cchhccCCCCcEEEEEEeccCCCEEEEEEEECCCCCeEEEEEEecCcc-cHHHHHHHHHHHHhccCCCCeeeeeeEEeec
Confidence            33444556788999999999999999999974 688999998865432 336788999999999 89999999999987 


Q ss_pred             -----CCEEEEEEecCCCCC------------CCHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEec
Q 047066          172 -----TEVPLLVNEFVKLPT------------ISWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDF  221 (256)
Q Consensus       172 -----~~~~~lv~e~~~~~~------------l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DF  221 (256)
                           .+..+++|||+++++            ++......++.+++             +||||+|||++.++.+||+||
T Consensus        94 ~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~dlkp~NIl~~~~~~~kl~Df  173 (326)
T 2x7f_A           94 NPPGMDDQLWLVMEFCGAGSVTDLIKNTKGNTLKEEWIAYICREILRGLSHLHQHKVIHRDIKGQNVLLTENAEVKLVDF  173 (326)
T ss_dssp             C--CCCCEEEEEEECCTTEEHHHHHHHSGGGCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCSGGGEEECTTCCEEECCC
T ss_pred             cCccccceEEEEEEcCCCCcHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCcHHHEEEcCCCCEEEeeC
Confidence                 467999999998854            45555556666655             599999999999999999999


Q ss_pred             CCceecCCCCceeeeeeeecccc----ccc-----ccCCCCCCC
Q 047066          222 GASKLVPIDETQLSTMVQGTLGY----YLH-----TSQGTLNKE  256 (256)
Q Consensus       222 Gla~~~~~~~~~~~~~~~Gt~~y----~~~-----~~~~t~ksD  256 (256)
                      |++......... .....||+.|    .+.     ...++.++|
T Consensus       174 g~~~~~~~~~~~-~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~D  216 (326)
T 2x7f_A          174 GVSAQLDRTVGR-RNTFIGTPYWMAPEVIACDENPDATYDFKSD  216 (326)
T ss_dssp             TTTC--------------CCGGGCCHHHHC--------CCTTHH
T ss_pred             cCceecCcCccc-cccccCCccccChhhhccccccCcCCCccch
Confidence            999876433222 2334689999    222     456777765

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A*

Probab=99.87  E-value=1.4e-22  Score=171.62  Aligned_cols=153  Identities=21%  Similarity=0.406  Sum_probs=113.6

Q ss_pred             cCCCcccceeeeeCceEEEEEEEC-CCcE----EEEEEecccC-hhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEE
Q 047066          103 TNNYAYDRMIGRGGYGTVFLGSLS-DNKA----IAIKKSRIVY-QSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPL  176 (256)
Q Consensus       103 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~----vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~  176 (256)
                      .++|++.+.||+|+||.||+|.+. ++..    |++|.+.... ......+.+|+.+++.++||||+++++++.. +..+
T Consensus        12 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~-~~~~   90 (325)
T 3kex_A           12 ETELRKLKVLGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDKSGRQSFQAVTDHMLAIGSLDHAHIVRLLGLCPG-SSLQ   90 (325)
T ss_dssp             TTTEEEEEEEECCSSCEEEEEEECCTTCSCCEEEEEEEECCTTSCSCBCSCCHHHHHHHTCCCTTBCCEEEEECB-SSEE
T ss_pred             HhHceeeeeeeecCCceEEEEEEcCCCceEEEEEEEEeccccccHHHHHHHHHHHHHHhcCCCCCcCeEEEEEcC-CccE
Confidence            367899999999999999999964 3443    7888764332 2333567889999999999999999999864 5688


Q ss_pred             EEEecCCCCCC-----------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCc
Q 047066          177 LVNEFVKLPTI-----------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDET  232 (256)
Q Consensus       177 lv~e~~~~~~l-----------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~  232 (256)
                      ++|||+.+++|           ++.....++.|++             |||||+|||++.++.+||+|||+|+.+.....
T Consensus        91 ~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dikp~Nil~~~~~~~kl~Dfg~a~~~~~~~~  170 (325)
T 3kex_A           91 LVTQYLPLGSLLDHVRQHRGALGPQLLLNWGVQIAKGMYYLEEHGMVHRNLAARNVLLKSPSQVQVADFGVADLLPPDDK  170 (325)
T ss_dssp             EEEECCTTCBSHHHHHSSGGGSCTTHHHHHHHHHHHHHHHHHHTTCCCSCCSSTTEEESSSSCEEECSCSGGGGSCCCTT
T ss_pred             EEEEeCCCCCHHHHHHHccccCCHHHHHHHHHHHHHHHHHHHhCCCCCCccchheEEECCCCeEEECCCCcccccCcccc
Confidence            99999998776           3333455555544             69999999999999999999999998754433


Q ss_pred             e-eeeeeeecccc----cccccCCCCCCC
Q 047066          233 Q-LSTMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       233 ~-~~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      . ......||+.|    .+.++.++.++|
T Consensus       171 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~D  199 (325)
T 3kex_A          171 QLLYSEAKTPIKWMALESIHFGKYTHQSD  199 (325)
T ss_dssp             CCC-----CCTTTSCHHHHHHCCCCHHHH
T ss_pred             cccccCCCCcccccChHHhccCCCChhhH
Confidence            2 23445678888    555666776665

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}

Probab=99.87  E-value=3.1e-22  Score=169.60  Aligned_cols=162  Identities=19%  Similarity=0.279  Sum_probs=118.0

Q ss_pred             ChHHHHhhcCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccChhHHHHHHHHHHHHHhCC-CCcccceeeEEE--
Q 047066           95 TAGELKIATNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVYQSQIEQCINKVVVLSQIN-HRNVVGLLGCCL--  170 (256)
Q Consensus        95 ~~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~l~~~~~--  170 (256)
                      ....+++...+|++.+.||+|+||.||+|... +++.||+|.+........+.+.+|+.++.++. ||||+++++++.  
T Consensus        19 ~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~~h~~iv~~~~~~~~~   98 (337)
T 3ll6_A           19 VGQTVELGELRLRVRRVLAEGGFAFVYEAQDVGSGREYALKRLLSNEEEKNRAIIQEVCFMKKLSGHPNIVQFCSAASIG   98 (337)
T ss_dssp             TTCEEEETTEEEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEESSHHHHHHHHHHHHHHHHHTTSTTBCCEEEEEEEC
T ss_pred             hcceeeccCceEEEEEEEccCCceEEEEEEECCCCcEEEEEEecCCchHHHHHHHHHHHHHHHhccCCChhhcccccccc
Confidence            33455566678999999999999999999975 68899999887666666678999999999995 999999999995  


Q ss_pred             ------ECCEEEEEEecCCC------------CCCCHHHHHHHHHHHH---------------hccCCCcEEEcCCCcEE
Q 047066          171 ------ETEVPLLVNEFVKL------------PTISWEVRIRIAAETA---------------EDIKSINILLDDNYTTK  217 (256)
Q Consensus       171 ------~~~~~~lv~e~~~~------------~~l~~~~~~~~~~~i~---------------rdlk~~NiLi~~~~~~k  217 (256)
                            .....+++|||+.+            +.+++.....++.+++               +||||+|||++.++.+|
T Consensus        99 ~~~~~~~~~~~~lv~e~~~g~L~~~l~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~~~ivH~Dikp~NIl~~~~~~~k  178 (337)
T 3ll6_A           99 KEESDTGQAEFLLLTELCKGQLVEFLKKMESRGPLSCDTVLKIFYQTCRAVQHMHRQKPPIIHRDLKVENLLLSNQGTIK  178 (337)
T ss_dssp             TTTSTTSSEEEEEEEECCSEEHHHHHHHHHTTCSCCHHHHHHHHHHHHHHHHHHHTSSSCCBCCCCCGGGCEECTTSCEE
T ss_pred             ccccccCCceEEEEEEecCCCHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhCCCCEEEccCCcccEEECCCCCEE
Confidence                  34458999999965            3466666666666554               69999999999999999


Q ss_pred             EEecCCceecCCCCcee-----------eeeeeecccc----cc---cccCCCCCCC
Q 047066          218 VCDFGASKLVPIDETQL-----------STMVQGTLGY----YL---HTSQGTLNKE  256 (256)
Q Consensus       218 i~DFGla~~~~~~~~~~-----------~~~~~Gt~~y----~~---~~~~~t~ksD  256 (256)
                      |+|||+++.........           .....||+.|    .+   .+..++.++|
T Consensus       179 l~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~~D  235 (337)
T 3ll6_A          179 LCDFGSATTISHYPDYSWSAQRRALVEEEITRNTTPMYRTPEIIDLYSNFPIGEKQD  235 (337)
T ss_dssp             BCCCTTCBCCSSCC-------------------------------CCTTSCSSHHHH
T ss_pred             EecCccceeccccCcccccccccccchhhccccCCCCcCChhhhhccccCCCChHHh
Confidence            99999998775432211           1134588888    22   3555666655

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*

Probab=99.87  E-value=3.1e-22  Score=178.39  Aligned_cols=152  Identities=22%  Similarity=0.284  Sum_probs=122.9

Q ss_pred             cCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC---hhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEE
Q 047066          103 TNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY---QSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLV  178 (256)
Q Consensus       103 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv  178 (256)
                      .++|++.+.||+|+||.||+|..+ +++.||+|.+....   ....+.+.+|+.+++.++||||+++++++...+..++|
T Consensus        25 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv  104 (484)
T 3nyv_A           25 SDRYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLLKQLDHPNIMKLYEFFEDKGYFYLV  104 (484)
T ss_dssp             HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCBSSCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             cCceEEeeEEecCCCEEEEEEEECCCCCEEEEEEEEhhhcccchHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEEE
Confidence            467999999999999999999976 78999999875432   34457899999999999999999999999999999999


Q ss_pred             EecCCCCCC----------CHHHHHHHHHHHH-------------hccCCCcEEE---cCCCcEEEEecCCceecCCCCc
Q 047066          179 NEFVKLPTI----------SWEVRIRIAAETA-------------EDIKSINILL---DDNYTTKVCDFGASKLVPIDET  232 (256)
Q Consensus       179 ~e~~~~~~l----------~~~~~~~~~~~i~-------------rdlk~~NiLi---~~~~~~ki~DFGla~~~~~~~~  232 (256)
                      |||+.+++|          ++.....++.|++             |||||+|||+   +.++.+||+|||+|+.+.....
T Consensus       105 ~e~~~~~~L~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~~~~~  184 (484)
T 3nyv_A          105 GEVYTGGELFDEIISRKRFSEVDAARIIRQVLSGITYMHKNKIVHRDLKPENLLLESKSKDANIRIIDFGLSTHFEASKK  184 (484)
T ss_dssp             ECCCCSCBHHHHHHTCSCCBHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEESSSSTTCCEEECCTTHHHHBCCCCS
T ss_pred             EecCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeeeCCCCHHHEEEecCCCCCcEEEEeeeeeEEcccccc
Confidence            999988654          5555566666655             6999999999   5678999999999987754432


Q ss_pred             eeeeeeeecccc---cccccCCCCCCC
Q 047066          233 QLSTMVQGTLGY---YLHTSQGTLNKE  256 (256)
Q Consensus       233 ~~~~~~~Gt~~y---~~~~~~~t~ksD  256 (256)
                        .....||+.|   +...+.++.++|
T Consensus       185 --~~~~~gt~~y~aPE~~~~~~~~~~D  209 (484)
T 3nyv_A          185 --MKDKIGTAYYIAPEVLHGTYDEKCD  209 (484)
T ss_dssp             --HHHHTTGGGTCCHHHHHTCCCTHHH
T ss_pred             --cccCCCCccccCceeecCCCCCcce
Confidence              2334599999   444557777765

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...

Probab=99.87  E-value=2e-21  Score=161.19  Aligned_cols=151  Identities=21%  Similarity=0.303  Sum_probs=121.6

Q ss_pred             cCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC---hhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEE
Q 047066          103 TNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY---QSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLV  178 (256)
Q Consensus       103 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv  178 (256)
                      .++|++.+.||+|+||.||+|... ++..||+|.+....   ....+.+.+|+.+++.++||||+++++++...+..+++
T Consensus        13 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv   92 (284)
T 2vgo_A           13 IDDFDIGRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHLRHPNILRMYNYFHDRKRIYLM   92 (284)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             hhhceeeheecCCCCeEEEEEEEcCCCcEEEEEEEcccccchHHHHHHHHHHHHHHhcCCCCCEeeEEEEEEcCCEEEEE
Confidence            357899999999999999999976 57889999875432   22246788999999999999999999999999999999


Q ss_pred             EecCCCCCC----------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceee
Q 047066          179 NEFVKLPTI----------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLS  235 (256)
Q Consensus       179 ~e~~~~~~l----------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~  235 (256)
                      |||+++++|          +......++.+++             +||+|+||+++.++.+||+|||++.......   .
T Consensus        93 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~kl~Dfg~~~~~~~~~---~  169 (284)
T 2vgo_A           93 LEFAPRGELYKELQKHGRFDEQRSATFMEELADALHYCHERKVIHRDIKPENLLMGYKGELKIADFGWSVHAPSLR---R  169 (284)
T ss_dssp             ECCCTTEEHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHTTTEECCCCSGGGEEECTTCCEEECCCTTCEECSSSC---B
T ss_pred             EEeCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCceecCCCHHHEEEcCCCCEEEecccccccCcccc---c
Confidence            999988554          5555566666655             5999999999999999999999998764322   2


Q ss_pred             eeeeecccc----cccccCCCCCCC
Q 047066          236 TMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       236 ~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      ....||+.|    .+.+..++.++|
T Consensus       170 ~~~~~~~~y~aPE~~~~~~~~~~~D  194 (284)
T 2vgo_A          170 RTMCGTLDYLPPEMIEGKTHDEKVD  194 (284)
T ss_dssp             CCCCSCGGGCCHHHHTTCCBCTTHH
T ss_pred             ccccCCCCcCCHHHhccCCCCcccc
Confidence            234689999    555666777766

>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II}

Probab=99.87  E-value=9.1e-22  Score=170.39  Aligned_cols=151  Identities=21%  Similarity=0.278  Sum_probs=114.7

Q ss_pred             HhhcCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccChhHHHHHHHHHHHHHhCCCCcccceeeEEEEC------
Q 047066          100 KIATNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLET------  172 (256)
Q Consensus       100 ~~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~------  172 (256)
                      +...++|++.+.||+|+||.||+|... +++.||+|++......    ..+|+.+++.++||||+++++++...      
T Consensus         3 ~~~~~~y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~~~~~~~~----~~~E~~il~~l~hpnIv~l~~~~~~~~~~~~~   78 (383)
T 3eb0_A            3 ETSSKKYSLGKTLGTGSFGIVCEVFDIESGKRFALKKVLQDPRY----KNRELDIMKVLDHVNIIKLVDYFYTTGDEEPK   78 (383)
T ss_dssp             ---CTTEEEEEEEECC-CEEEEEEEETTTCCEEEEEEEECCTTS----CCHHHHHHTTCCCTTBCCEEEEEEEC------
T ss_pred             ccccceEEEEEEEEeccCEEEEEEEECCCCCEEEEEEEecCcch----HHHHHHHHHHcCCCCccchhheeeecCccccc
Confidence            455678999999999999999999974 7899999988643321    23699999999999999999998543      


Q ss_pred             --------------------------------CEEEEEEecCCC-------------CCCCHHHHHHHHHHHH-------
Q 047066          173 --------------------------------EVPLLVNEFVKL-------------PTISWEVRIRIAAETA-------  200 (256)
Q Consensus       173 --------------------------------~~~~lv~e~~~~-------------~~l~~~~~~~~~~~i~-------  200 (256)
                                                      ...++||||+++             +.+++.....++.|++       
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH  158 (383)
T 3eb0_A           79 PPQPPDDHNKLGGKNNGVNNHHKSVIVNPSQNKYLNVIMEYVPDTLHKVLKSFIRSGRSIPMNLISIYIYQLFRAVGFIH  158 (383)
T ss_dssp             -------------------------------CCEEEEEECCCSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccccccCCCceEEEEEEecCCccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence                                            348899999975             3466666677777765       


Q ss_pred             ------hccCCCcEEEc-CCCcEEEEecCCceecCCCCceeeeeeeecccc----cccc-cCCCCCCC
Q 047066          201 ------EDIKSINILLD-DNYTTKVCDFGASKLVPIDETQLSTMVQGTLGY----YLHT-SQGTLNKE  256 (256)
Q Consensus       201 ------rdlk~~NiLi~-~~~~~ki~DFGla~~~~~~~~~~~~~~~Gt~~y----~~~~-~~~t~ksD  256 (256)
                            |||||+|||++ +++.+||+|||+|+.+.....  .....||+.|    .+.+ ..++.++|
T Consensus       159 ~~gi~H~Dikp~Nil~~~~~~~~kl~Dfg~a~~~~~~~~--~~~~~~t~~y~aPE~~~~~~~~~~~~D  224 (383)
T 3eb0_A          159 SLGICHRDIKPQNLLVNSKDNTLKLCDFGSAKKLIPSEP--SVAYICSRFYRAPELMLGATEYTPSID  224 (383)
T ss_dssp             TTTEECSCCCGGGEEEETTTTEEEECCCTTCEECCTTSC--CCCCCCCSSCCCHHHHTTCSSCCTHHH
T ss_pred             HCcCccCccCHHHEEEcCCCCcEEEEECCCCcccCCCCC--CcCcccCCCccCHHHhcCCCCCCcchh
Confidence                  69999999998 688999999999997754432  2334589988    2333 34777765

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=99.86  E-value=6.8e-22  Score=164.37  Aligned_cols=156  Identities=21%  Similarity=0.330  Sum_probs=120.0

Q ss_pred             HhhcCCCcccc-eeeeeCceEEEEEEEC---CCcEEEEEEecccC-hhHHHHHHHHHHHHHhCCCCcccceeeEEEECCE
Q 047066          100 KIATNNYAYDR-MIGRGGYGTVFLGSLS---DNKAIAIKKSRIVY-QSQIEQCINKVVVLSQINHRNVVGLLGCCLETEV  174 (256)
Q Consensus       100 ~~~~~~~~~~~-~lg~G~~g~V~~~~~~---~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~  174 (256)
                      .+..++|.+.+ .||+|+||.||+|...   ++..||+|.++... ....+.+.+|+.+++.++||||+++++++ ..+.
T Consensus         5 ~~~~~~~~i~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~-~~~~   83 (287)
T 1u59_A            5 FLKRDNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVC-QAEA   83 (287)
T ss_dssp             BCCGGGEEEEEEEEECCTTEEEEEEEEC---CCEEEEEEEECSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEE-ESSS
T ss_pred             cccHHHhhhhhccccccCceeEEEeEeccCCCcceEEEEecCCccchhHHHHHHHHHHHHHhCCCCCEeEEEEEe-cCCC
Confidence            34456777776 9999999999999853   57789999987643 45567899999999999999999999999 5566


Q ss_pred             EEEEEecCCCCC-----------CCHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCC
Q 047066          175 PLLVNEFVKLPT-----------ISWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPID  230 (256)
Q Consensus       175 ~~lv~e~~~~~~-----------l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~  230 (256)
                      .+++|||+++++           +++.....++.+++             +||||+||+++.++.+||+|||+++.....
T Consensus        84 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nili~~~~~~kl~Dfg~~~~~~~~  163 (287)
T 1u59_A           84 LMLVMEMAGGGPLHKFLVGKREEIPVSNVAELLHQVSMGMKYLEEKNFVHRDLAARNVLLVNRHYAKISDFGLSKALGAD  163 (287)
T ss_dssp             EEEEEECCTTEEHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEEETTEEEECCCTTCEECTTC
T ss_pred             cEEEEEeCCCCCHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHHHCCEeeCCCchheEEEcCCCCEEECcccceeeeccC
Confidence            899999998743           56666777777766             599999999999999999999999987544


Q ss_pred             Cceee--eeeeecccc----cccccCCCCCCC
Q 047066          231 ETQLS--TMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       231 ~~~~~--~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      .....  ....||+.|    .+.+..++.++|
T Consensus       164 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~D  195 (287)
T 1u59_A          164 DSYYTARSAGKWPLKWYAPECINFRKFSSRSD  195 (287)
T ss_dssp             SCEECCCCSSCCCGGGCCHHHHHHCEECHHHH
T ss_pred             cceeeccccccccccccCHHHhccCCCCchhh
Confidence            33222  223467777    333445555544

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*

Probab=99.86  E-value=6.7e-22  Score=171.78  Aligned_cols=142  Identities=20%  Similarity=0.270  Sum_probs=111.4

Q ss_pred             hcCCCcccceeeeeCceEEEEEEECCCcEEEEEEeccc--ChhHHHHHHHHHHHHHhCC--CCcccceeeEEEECCEEEE
Q 047066          102 ATNNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIV--YQSQIEQCINKVVVLSQIN--HRNVVGLLGCCLETEVPLL  177 (256)
Q Consensus       102 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~--h~niv~l~~~~~~~~~~~l  177 (256)
                      ..+.|++.+.||+|+||.||++...+++.||+|.+...  .....+.+.+|+.++..++  ||||+++++++...+..++
T Consensus        54 ~~~~y~~~~~LG~G~fg~Vy~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~Ei~~l~~l~~~~~~iv~~~~~~~~~~~~~l  133 (390)
T 2zmd_A           54 KGRIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYM  133 (390)
T ss_dssp             TTEEEEEEEEEECCSSEEEEEEECTTCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEE
T ss_pred             cCCceEEEEEEccCCCeEEEEEEcCCCCEEEEEEEecccccHHHHHHHHHHHHHHHHcccCCCeEEEEEEEEecCCEEEE
Confidence            34569999999999999999999878999999988543  3455678999999999996  5999999999999999999


Q ss_pred             EEecCCC---------CCCCHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCce-e
Q 047066          178 VNEFVKL---------PTISWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQ-L  234 (256)
Q Consensus       178 v~e~~~~---------~~l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~-~  234 (256)
                      |||+..+         +.+++.....++.|++             |||||+|||++ ++.+||+|||+++.+...... .
T Consensus       134 v~E~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~aL~~lH~~~ivHrDlkp~NIll~-~~~~kl~DFG~a~~~~~~~~~~~  212 (390)
T 2zmd_A          134 VMECGNIDLNSWLKKKKSIDPWERKSYWKNMLEAVHTIHQHGIVHSDLKPANFLIV-DGMLKLIDFGIANQMQPDTTSVV  212 (390)
T ss_dssp             EEECCSEEHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHHTTTCCCCCCCGGGEEES-SSCEEECCCSSSCCC--------
T ss_pred             EEecCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeeecCCCHHHEEEE-CCeEEEEecCccccccCCCcccc
Confidence            9995432         3456666666666665             69999999996 579999999999977543322 2


Q ss_pred             eeeeeecccc
Q 047066          235 STMVQGTLGY  244 (256)
Q Consensus       235 ~~~~~Gt~~y  244 (256)
                      ....+||+.|
T Consensus       213 ~~~~~gt~~y  222 (390)
T 2zmd_A          213 KDSQVGAVNY  222 (390)
T ss_dssp             -CCSCCCGGG
T ss_pred             CCCCCcCCCc
Confidence            2345699999

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A

Probab=99.86  E-value=6.2e-22  Score=173.52  Aligned_cols=141  Identities=21%  Similarity=0.258  Sum_probs=104.4

Q ss_pred             hhcCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC--------hhHHHHHHHHHHHHHhCCCCcccceeeEEEE
Q 047066          101 IATNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY--------QSQIEQCINKVVVLSQINHRNVVGLLGCCLE  171 (256)
Q Consensus       101 ~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--------~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~  171 (256)
                      ...++|.+.+.||+|+||.||+|..+ +++.||+|.+....        ......+.+|+.++++++||||+++++++. 
T Consensus       132 ~~~~~y~~~~~LG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~l~~~~~-  210 (419)
T 3i6u_A          132 ALRDEYIMSKTLGSGACGEVKLAFERKTCKKVAIRIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFD-  210 (419)
T ss_dssp             HHHTTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGGTTC--------CCHHHHHHHHHHCCCTTBCCCCEEEE-
T ss_pred             hhhccEEEEeEEeeCCCeEEEEEEECCCCcEEEEEEEEechhcccccccchhHHHHHHHHHHHHhCCCCCEeeEEEEEe-
Confidence            34578999999999999999999975 68899999875421        112235789999999999999999999975 


Q ss_pred             CCEEEEEEecCCCCCC----------CHHHHHHHHHHHH-------------hccCCCcEEEcCC---CcEEEEecCCce
Q 047066          172 TEVPLLVNEFVKLPTI----------SWEVRIRIAAETA-------------EDIKSINILLDDN---YTTKVCDFGASK  225 (256)
Q Consensus       172 ~~~~~lv~e~~~~~~l----------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~---~~~ki~DFGla~  225 (256)
                      .+..++||||+++++|          ++.....++.|++             |||||+|||++.+   ..+||+|||+|+
T Consensus       211 ~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~i~~qi~~~l~~LH~~~ivHrDlkp~NIll~~~~~~~~~kl~DFG~a~  290 (419)
T 3i6u_A          211 AEDYYIVLELMEGGELFDKVVGNKRLKEATCKLYFYQMLLAVQYLHENGIIHRDLKPENVLLSSQEEDCLIKITDFGHSK  290 (419)
T ss_dssp             SSEEEEEEECCTTCBGGGGTSSSCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEESSSSSSCCEEECCSSTTT
T ss_pred             cCceEEEEEcCCCCcHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCChHhEEEecCCCcceEEEeecccce
Confidence            4568999999988654          5666666666655             6999999999654   459999999999


Q ss_pred             ecCCCCceeeeeeeecccc
Q 047066          226 LVPIDETQLSTMVQGTLGY  244 (256)
Q Consensus       226 ~~~~~~~~~~~~~~Gt~~y  244 (256)
                      .....  ......+||+.|
T Consensus       291 ~~~~~--~~~~~~~gt~~y  307 (419)
T 3i6u_A          291 ILGET--SLMRTLCGTPTY  307 (419)
T ss_dssp             SCC-------------CTT
T ss_pred             ecCCC--ccccccCCCCCc
Confidence            76532  223446799999

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...

Probab=99.86  E-value=4.5e-22  Score=165.70  Aligned_cols=156  Identities=23%  Similarity=0.374  Sum_probs=110.9

Q ss_pred             HHHhhcCCCcccceeeeeCceEEEEEEECCCcEEEEEEecccC--hhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEE
Q 047066           98 ELKIATNNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVY--QSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVP  175 (256)
Q Consensus        98 ~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~  175 (256)
                      ..++..++|++.+.||+|+||.||+|...  ..+|+|.++...  ....+.+.+|+.+++.++||||+++++++ ..+..
T Consensus        18 ~~ei~~~~y~~~~~lG~G~~g~Vy~~~~~--~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~-~~~~~   94 (289)
T 3og7_A           18 DWEIPDGQITVGQRIGSGSFGTVYKGKWH--GDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYS-TAPQL   94 (289)
T ss_dssp             CCBCCTTSCEEEEEEEECSSEEEEEEESS--SEEEEEEESCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEE-CSSSC
T ss_pred             CCccCccceeeeeEecCCCCeEEEEEEEc--CceEEEEEeccCCCHHHHHHHHHHHHHHHhCCCCcEEEEEeec-cCCcc
Confidence            34667789999999999999999999864  359999886443  45567899999999999999999999965 45568


Q ss_pred             EEEEecCCCCC-----------CCHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCC
Q 047066          176 LLVNEFVKLPT-----------ISWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDE  231 (256)
Q Consensus       176 ~lv~e~~~~~~-----------l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~  231 (256)
                      +++|||+++++           +++.....++.+++             +||||+|||++.++.+||+|||+++......
T Consensus        95 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~L~~lH~~~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~  174 (289)
T 3og7_A           95 AIVTQWCEGSSLYHHLHASETKFEMKKLIDIARQTARGMDYLHAKSIIHRDLKSNNIFLHEDNTVKIGDFGLATEKSRWS  174 (289)
T ss_dssp             EEEEECCCEEEHHHHHTTC---CCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEETTTEEEECCCC---------
T ss_pred             EEEEEecCCCcHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhCCcccccCccceEEECCCCCEEEccceecccccccc
Confidence            99999998644           45566666666665             5999999999999999999999998664322


Q ss_pred             -ceeeeeeeecccc----ccc---ccCCCCCCC
Q 047066          232 -TQLSTMVQGTLGY----YLH---TSQGTLNKE  256 (256)
Q Consensus       232 -~~~~~~~~Gt~~y----~~~---~~~~t~ksD  256 (256)
                       ........||+.|    .+.   +..++.++|
T Consensus       175 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~D  207 (289)
T 3og7_A          175 GSHQFEQLSGSILWMAPEVIRMQDSNPYSFQSD  207 (289)
T ss_dssp             ---------CCCTTCCHHHHC----CCSCHHHH
T ss_pred             ccccccccCCCccccCchhhcccCCCCCCcccc
Confidence             2222345689999    222   455565554

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ...

Probab=99.86  E-value=1.4e-21  Score=161.20  Aligned_cols=141  Identities=26%  Similarity=0.372  Sum_probs=116.1

Q ss_pred             CCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC-hhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEec
Q 047066          104 NNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY-QSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEF  181 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~  181 (256)
                      ++|++.+.||+|+||.||+|... +++.||+|.+.... ....+.+.+|+.+++.++||||+++++++...+..+++|||
T Consensus         7 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   86 (276)
T 2yex_A            7 EDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLFLEY   86 (276)
T ss_dssp             HHEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGCTTHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred             cceEEEEEeecCCCcEEEEEEECCCCcEEEEEEeeeccchhhhHHHHHHHHHHHhcCCCCceeeeeEEEcCCEEEEEEEe
Confidence            56899999999999999999976 68899999886433 34457789999999999999999999999999999999999


Q ss_pred             CCCCC----------CCHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCce-eeee
Q 047066          182 VKLPT----------ISWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQ-LSTM  237 (256)
Q Consensus       182 ~~~~~----------l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~-~~~~  237 (256)
                      +++++          ++......++.+++             +||+|+||+++.++.+||+|||++.....+... ....
T Consensus        87 ~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~  166 (276)
T 2yex_A           87 CSGGELFDRIEPDIGMPEPDAQRFFHQLMAGVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNK  166 (276)
T ss_dssp             CTTEEGGGGSBTTTBCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECCCTTCEECEETTEECCBCC
T ss_pred             cCCCcHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCChHHEEEccCCCEEEeeCCCccccCCCcchhcccC
Confidence            98754          46666677777665             599999999999999999999999876433221 1233


Q ss_pred             eeecccc
Q 047066          238 VQGTLGY  244 (256)
Q Consensus       238 ~~Gt~~y  244 (256)
                      ..||+.|
T Consensus       167 ~~~~~~y  173 (276)
T 2yex_A          167 MCGTLPY  173 (276)
T ss_dssp             CCSCGGG
T ss_pred             CccccCc
Confidence            4688888

>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A*

Probab=99.86  E-value=1.4e-21  Score=167.04  Aligned_cols=154  Identities=19%  Similarity=0.332  Sum_probs=119.6

Q ss_pred             cCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC-hhHHHHHHHHHHHHHhCCCCcccceeeEEEEC-----CEE
Q 047066          103 TNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY-QSQIEQCINKVVVLSQINHRNVVGLLGCCLET-----EVP  175 (256)
Q Consensus       103 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~-----~~~  175 (256)
                      .++|.+.+.||+|+||.||+|... +++.||+|.+.... ......+.+|+.+++.++||||+++++++...     ...
T Consensus        10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~   89 (353)
T 2b9h_A           10 SSDFQLKSLLGEGAYGVVCSATHKPTGEIVAIKKIEPFDKPLFALRTLREIKILKHFKHENIITIFNIQRPDSFENFNEV   89 (353)
T ss_dssp             CTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCSTTCCCE
T ss_pred             ccceEEeeEEcCCCCeEEEEEEECCCCcEEEEEeecccccchHHHHHHHHHHHHHhCcCCCcCCeeeeecccccCccceE
Confidence            468999999999999999999975 68899999986543 44456788999999999999999999988754     678


Q ss_pred             EEEEecCCC--------CCCCHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCcee
Q 047066          176 LLVNEFVKL--------PTISWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQL  234 (256)
Q Consensus       176 ~lv~e~~~~--------~~l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~  234 (256)
                      +++|||+.+        +.+++.....++.|++             +||||+|||++.++.+||+|||+++.........
T Consensus        90 ~lv~e~~~~~L~~~~~~~~~~~~~~~~~~~qi~~~L~~LH~~~ivH~Dlkp~Nil~~~~~~~kl~Dfg~a~~~~~~~~~~  169 (353)
T 2b9h_A           90 YIIQELMQTDLHRVISTQMLSDDHIQYFIYQTLRAVKVLHGSNVIHRDLKPSNLLINSNCDLKVCDFGLARIIDESAADN  169 (353)
T ss_dssp             EEEECCCSEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECTTCCEEECCCTTCEECC------
T ss_pred             EEEEeccCccHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeEEcCCCcEEEEecccccccccccccc
Confidence            999999975        3466666677777665             5999999999999999999999998765332111


Q ss_pred             ---------eeeeeecccc---c--ccccCCCCCCC
Q 047066          235 ---------STMVQGTLGY---Y--LHTSQGTLNKE  256 (256)
Q Consensus       235 ---------~~~~~Gt~~y---~--~~~~~~t~ksD  256 (256)
                               .....||+.|   +  ..+..++.++|
T Consensus       170 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~D  205 (353)
T 2b9h_A          170 SEPTGQQSGMVEFVATRWYRAPEVMLTSAKYSRAMD  205 (353)
T ss_dssp             ----------CCCCCCGGGCCHHHHHSCCCCCHHHH
T ss_pred             cCccccccchhhccccccccCCeeeccCCCccchhh
Confidence                     1223689999   2  23456666655

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ...

Probab=99.86  E-value=2.1e-21  Score=160.78  Aligned_cols=151  Identities=20%  Similarity=0.230  Sum_probs=118.8

Q ss_pred             CCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccCh------hHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEE
Q 047066          104 NNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVYQ------SQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPL  176 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~------~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~  176 (256)
                      ++|++.+.||+|+||.||++... +++.+|+|.+.....      ...+.+.+|+.+++.++||||+++++++...+..+
T Consensus         5 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~   84 (283)
T 3bhy_A            5 DHYEMGEELGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSREEIEREVNILREIRHPNIITLHDIFENKTDVV   84 (283)
T ss_dssp             HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEE
T ss_pred             hhhhhHHhhcccCceEEEEEEEcCCCCeeehHHhhhccccccccchHHHHHHHHHHHHHhCCCCCeeehhheecCCCeEE
Confidence            56889999999999999999976 688999998754321      13577899999999999999999999999999999


Q ss_pred             EEEecCCCCCC----------CHHHHHHHHHHHH-------------hccCCCcEEEcCCC----cEEEEecCCceecCC
Q 047066          177 LVNEFVKLPTI----------SWEVRIRIAAETA-------------EDIKSINILLDDNY----TTKVCDFGASKLVPI  229 (256)
Q Consensus       177 lv~e~~~~~~l----------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~----~~ki~DFGla~~~~~  229 (256)
                      ++|||+++++|          ++.....++.+++             +||||+||+++.++    .+||+|||++.....
T Consensus        85 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~~~~~kl~dfg~~~~~~~  164 (283)
T 3bhy_A           85 LILELVSGGELFDFLAEKESLTEDEATQFLKQILDGVHYLHSKRIAHFDLKPENIMLLDKNVPNPRIKLIDFGIAHKIEA  164 (283)
T ss_dssp             EEEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEESCSSSSSCCEEECCCTTCEECC-
T ss_pred             EEEeecCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCccCCCCChHHEEEecCCCCCCceEEEecccceeccC
Confidence            99999988654          5555666666665             59999999998877    899999999987654


Q ss_pred             CCceeeeeeeecccc----cccccCCCCCCC
Q 047066          230 DETQLSTMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       230 ~~~~~~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      ...  .....||+.|    .+.++.++.++|
T Consensus       165 ~~~--~~~~~~~~~y~aPE~~~~~~~~~~~D  193 (283)
T 3bhy_A          165 GNE--FKNIFGTPEFVAPEIVNYEPLGLEAD  193 (283)
T ss_dssp             ---------CCCGGGCCHHHHTTCCCCTHHH
T ss_pred             CCc--ccccCCCcCccCcceecCCCCCcchh
Confidence            322  2334589999    455566776665

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A

Probab=99.86  E-value=7.9e-22  Score=165.31  Aligned_cols=151  Identities=23%  Similarity=0.292  Sum_probs=117.7

Q ss_pred             cCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEec
Q 047066          103 TNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEF  181 (256)
Q Consensus       103 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~  181 (256)
                      .++|.+.+.||+|+||.||++... +++.||+|.+........+.+.+|+.+++.++||||+++++++...+..+++|||
T Consensus         8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   87 (304)
T 2jam_A            8 RKTFIFMEVLGSGAFSEVFLVKQRLTGKLFALKCIKKSPAFRDSSLENEIAVLKKIKHENIVTLEDIYESTTHYYLVMQL   87 (304)
T ss_dssp             HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECC------HHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEECC
T ss_pred             hccceeeeeccCCCCceEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHhCCCCCeeehhhhcccCCEEEEEEEc
Confidence            357899999999999999999975 6899999998765444456788999999999999999999999999999999999


Q ss_pred             CCCCCC----------CHHHHHHHHHHHH-------------hccCCCcEEE---cCCCcEEEEecCCceecCCCCceee
Q 047066          182 VKLPTI----------SWEVRIRIAAETA-------------EDIKSINILL---DDNYTTKVCDFGASKLVPIDETQLS  235 (256)
Q Consensus       182 ~~~~~l----------~~~~~~~~~~~i~-------------rdlk~~NiLi---~~~~~~ki~DFGla~~~~~~~~~~~  235 (256)
                      +++++|          ++.....++.+++             +||||+||++   +.++.+||+|||+++......   .
T Consensus        88 ~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dikp~NIl~~~~~~~~~~kl~Dfg~~~~~~~~~---~  164 (304)
T 2jam_A           88 VSGGELFDRILERGVYTEKDASLVIQQVLSAVKYLHENGIVHRDLKPENLLYLTPEENSKIMITDFGLSKMEQNGI---M  164 (304)
T ss_dssp             CCSCBHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTTCCCCSCCGGGCEESSSSTTCCEEBCSCSTTCCCCCBT---T
T ss_pred             CCCccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCCHHHEEEecCCCCCCEEEccCCcceecCCCc---c
Confidence            988665          4455555666555             5999999999   788899999999998653321   2


Q ss_pred             eeeeecccc----cccccCCCCCCC
Q 047066          236 TMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       236 ~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      ....||+.|    .+.+..++.++|
T Consensus       165 ~~~~~~~~y~aPE~~~~~~~~~~~D  189 (304)
T 2jam_A          165 STACGTPGYVAPEVLAQKPYSKAVD  189 (304)
T ss_dssp             HHHHSCCCBCCTTTBSSCSCCHHHH
T ss_pred             ccccCCCCccChHHhccCCCCchhh
Confidence            233588888    444555666554

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}

Probab=99.86  E-value=3.2e-22  Score=169.47  Aligned_cols=155  Identities=18%  Similarity=0.378  Sum_probs=119.5

Q ss_pred             hcCCCcccceeeeeCceEEEEEEE-----CCCcEEEEEEecccChhHHHHHHHHHHHHHhCCCCcccceeeEEEEC--CE
Q 047066          102 ATNNYAYDRMIGRGGYGTVFLGSL-----SDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLET--EV  174 (256)
Q Consensus       102 ~~~~~~~~~~lg~G~~g~V~~~~~-----~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~--~~  174 (256)
                      ..++|++.+.||+|+||.||++..     .+++.||+|.+........+.+.+|+.+++.++||||+++++++...  +.
T Consensus        39 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~  118 (326)
T 2w1i_A           39 EERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRN  118 (326)
T ss_dssp             CGGGEEEEEEEECCSSEEEEEEEECTTSSSCCEEEEEEEESSCCSHHHHHHHHHHHHHHTCCCTTBCCEEEEECC----C
T ss_pred             CHHHceeeeeeccCCCeEEEEEEeccccCCCceEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEEecCCCc
Confidence            346789999999999999999984     36889999998876666778899999999999999999999998754  36


Q ss_pred             EEEEEecCCCCCC-----------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCC
Q 047066          175 PLLVNEFVKLPTI-----------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPID  230 (256)
Q Consensus       175 ~~lv~e~~~~~~l-----------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~  230 (256)
                      .+++|||+++++|           ++.....++.+++             +||||+|||++.++.+||+|||+++....+
T Consensus       119 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~dikp~NIli~~~~~~kL~Dfg~~~~~~~~  198 (326)
T 2w1i_A          119 LKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLGTKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQD  198 (326)
T ss_dssp             CEEEECCCTTCBHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEEEETTEEEECCCTTCEECCSS
T ss_pred             eEEEEECCCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhCCEeccCCCcceEEEcCCCcEEEecCcchhhcccc
Confidence            8999999988554           5555666666665             599999999999999999999999987654


Q ss_pred             Cceee--eeeeecccc----cccccCCCCCCC
Q 047066          231 ETQLS--TMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       231 ~~~~~--~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      .....  ....||+.|    .+.+..++.++|
T Consensus       199 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~D  230 (326)
T 2w1i_A          199 KEYYKVKEPGESPIFWYAPESLTESKFSVASD  230 (326)
T ss_dssp             CSEEECSSCCSCCGGGCCHHHHHHCEEEHHHH
T ss_pred             ccccccccCCCCceeEECchhhcCCCCCchhh
Confidence            33221  223466666    333444444443

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*

Probab=99.86  E-value=3.4e-22  Score=167.14  Aligned_cols=154  Identities=18%  Similarity=0.221  Sum_probs=117.0

Q ss_pred             hcCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEe
Q 047066          102 ATNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNE  180 (256)
Q Consensus       102 ~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e  180 (256)
                      ..++|++.+.||+|+||.||+|... ++..+|+|.+........+.+.+|+.+++.++||||+++++++...+..+++||
T Consensus        17 ~~~~y~i~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   96 (302)
T 2j7t_A           17 PNEVWEIVGELGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYIVEIEILATCDHPYIVKLLGAYYHDGKLWIMIE   96 (302)
T ss_dssp             GGGTEEEEEEEECSTTCCEEEEEETTTCCEEEEEEEC----CCHHHHHHHHHHHHHCCCTTBCCEEEEEECC-CEEEEEE
T ss_pred             CccceeecceeccCCCeEEEEEEEcCCCcEEEEEEecCCCHHHHHHHHHHHHHHhcCCCCCEeeeeeeeeeCCeEEEEEE
Confidence            3478999999999999999999986 588999999876655566889999999999999999999999999999999999


Q ss_pred             cCCCCC-----------CCHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceeee
Q 047066          181 FVKLPT-----------ISWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLST  236 (256)
Q Consensus       181 ~~~~~~-----------l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~  236 (256)
                      |+++++           +++.....++.+++             +||||+||+++.++.+||+|||++....... ....
T Consensus        97 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~-~~~~  175 (302)
T 2j7t_A           97 FCPGGAVDAIMLELDRGLTEPQIQVVCRQMLEALNFLHSKRIIHRDLKAGNVLMTLEGDIRLADFGVSAKNLKTL-QKRD  175 (302)
T ss_dssp             CCTTEEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCSGGGEEECTTSCEEECCCHHHHHHHHHH-HC--
T ss_pred             eCCCCcHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHhcCCcccCCCCHHHEEECCCCCEEEEECCCCccccccc-cccc
Confidence            998754           45555666666655             5999999999999999999999986432111 1122


Q ss_pred             eeeecccc----cc-----cccCCCCCCC
Q 047066          237 MVQGTLGY----YL-----HTSQGTLNKE  256 (256)
Q Consensus       237 ~~~Gt~~y----~~-----~~~~~t~ksD  256 (256)
                      ...||+.|    .+     ....++.++|
T Consensus       176 ~~~~~~~y~aPE~~~~~~~~~~~~~~~~D  204 (302)
T 2j7t_A          176 SFIGTPYWMAPEVVMCETMKDTPYDYKAD  204 (302)
T ss_dssp             ---CCGGGCCHHHHHHHHTTSTTTTTHHH
T ss_pred             cccCChhhcCCeeeccccCCCCCCchhhh
Confidence            34588888    22     3455666655

>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...

Probab=99.86  E-value=1.1e-21  Score=169.14  Aligned_cols=150  Identities=19%  Similarity=0.253  Sum_probs=106.8

Q ss_pred             cCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEeccc--ChhHHHHHHHHHHHHHhCCCCcccceeeEEEEC------C
Q 047066          103 TNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIV--YQSQIEQCINKVVVLSQINHRNVVGLLGCCLET------E  173 (256)
Q Consensus       103 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~------~  173 (256)
                      .++|++.+.||+|+||.||+|... +++.||+|++...  .......+.+|+.+++.++||||+++++++...      .
T Consensus        28 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~~  107 (367)
T 2fst_X           28 PERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFN  107 (367)
T ss_dssp             ETTEEEEEECC----CCEEEEEETTTTEEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGCC
T ss_pred             CCceEEeeEEeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCccccCC
Confidence            378999999999999999999964 6899999998643  234557789999999999999999999998754      5


Q ss_pred             EEEEEEecCCC--------CCCCHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCc
Q 047066          174 VPLLVNEFVKL--------PTISWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDET  232 (256)
Q Consensus       174 ~~~lv~e~~~~--------~~l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~  232 (256)
                      ..++++|++.+        +.+++.....++.|++             |||||+|||++.++.+||+|||+|+.....  
T Consensus       108 ~~~lv~e~~~~~L~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~givH~Dlkp~NIll~~~~~~kL~DFG~a~~~~~~--  185 (367)
T 2fst_X          108 DVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTADE--  185 (367)
T ss_dssp             CCEEEEECCCEECC-----CCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTCCEEECC------------
T ss_pred             eEEEEecccCCCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeeeCCCCHhhEEECCCCCEEEeecccccccccc--
Confidence            67999999843        3466666677776665             699999999999999999999999875432  


Q ss_pred             eeeeeeeecccc----cccc-cCCCCCCC
Q 047066          233 QLSTMVQGTLGY----YLHT-SQGTLNKE  256 (256)
Q Consensus       233 ~~~~~~~Gt~~y----~~~~-~~~t~ksD  256 (256)
                        .+...||+.|    .+.+ ..++.++|
T Consensus       186 --~~~~~~t~~y~aPE~~~~~~~~~~~~D  212 (367)
T 2fst_X          186 --MTGYVATRWYRAPEIMLNWMHYNQTVD  212 (367)
T ss_dssp             -------CCCTTCCHHHHTTCCSCCTTHH
T ss_pred             --CCCcCcCcCccChHHHcCCcCCCchhh
Confidence              2345699999    3333 56777776

>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A

Probab=99.86  E-value=1.3e-21  Score=168.70  Aligned_cols=150  Identities=21%  Similarity=0.299  Sum_probs=117.9

Q ss_pred             cCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC--hhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEE----
Q 047066          103 TNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY--QSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVP----  175 (256)
Q Consensus       103 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~----  175 (256)
                      .++|.+.+.||+|+||.||+|... +++.||+|.+....  ......+.+|+.+++.++||||+++++++...+..    
T Consensus        41 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~  120 (371)
T 4exu_A           41 PKTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNFY  120 (371)
T ss_dssp             ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSSTTCC
T ss_pred             cccEEEEeEEecCCCeEEEEEEECCCCCEEEEEEecccccchhHHHHHHHHHHHHHhcCCCCchhhhhheeccCCcccce
Confidence            368999999999999999999975 68999999986532  34457789999999999999999999999876654    


Q ss_pred             --EEEEecCCC-------CCCCHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCce
Q 047066          176 --LLVNEFVKL-------PTISWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQ  233 (256)
Q Consensus       176 --~lv~e~~~~-------~~l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~  233 (256)
                        +++|||+.+       ..+++.....++.+++             +||||+|||++.++.+||+|||+++.....   
T Consensus       121 ~~~lv~e~~~~~l~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dikp~NIll~~~~~~kL~Dfg~a~~~~~~---  197 (371)
T 4exu_A          121 DFYLVMPFMQTDLQKIMGMEFSEEKIQYLVYQMLKGLKYIHSAGVVHRDLKPGNLAVNEDCELKILDFGLARHADAE---  197 (371)
T ss_dssp             CCEEEEECCCEEHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTCCEEECSTTCC---------
T ss_pred             eEEEEEccccccHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHCCCcCCCcCHHHeEECCCCCEEEEecCcccccccC---
Confidence              999999975       3467777777777766             599999999999999999999999875432   


Q ss_pred             eeeeeeecccc----cccc-cCCCCCCC
Q 047066          234 LSTMVQGTLGY----YLHT-SQGTLNKE  256 (256)
Q Consensus       234 ~~~~~~Gt~~y----~~~~-~~~t~ksD  256 (256)
                       .....||+.|    .+.+ ..++.++|
T Consensus       198 -~~~~~~t~~y~aPE~~~~~~~~~~~~D  224 (371)
T 4exu_A          198 -MTGYVVTRWYRAPEVILSWMHYNQTVD  224 (371)
T ss_dssp             ---CTTCCCTTSCHHHHSCCSCCCTTHH
T ss_pred             -cCCcccCccccCHHHhcCCCCCCcHHh
Confidence             2334589999    3333 56777776

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A

Probab=99.86  E-value=3.5e-21  Score=165.79  Aligned_cols=141  Identities=25%  Similarity=0.311  Sum_probs=116.1

Q ss_pred             hcCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC--------hhHHHHHHHHHHHHHhC-CCCcccceeeEEEE
Q 047066          102 ATNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY--------QSQIEQCINKVVVLSQI-NHRNVVGLLGCCLE  171 (256)
Q Consensus       102 ~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--------~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~  171 (256)
                      ..++|.+.+.||+|+||.||+|..+ +|+.||||.+....        ....+.+.+|+.+++.+ +||||+++++++..
T Consensus        92 ~~~~y~~~~~lg~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~  171 (365)
T 2y7j_A           92 FYQKYDPKDVIGRGVSSVVRRCVHRATGHEFAVKIMEVTAERLSPEQLEEVREATRRETHILRQVAGHPHIITLIDSYES  171 (365)
T ss_dssp             HHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEETTSSCCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEEB
T ss_pred             hhhhcccceEEecCCCEEEEEEEECCCCcEEEEEEEEccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeEEEEEEee
Confidence            3467899999999999999999986 68999999876432        12245688999999999 89999999999999


Q ss_pred             CCEEEEEEecCCCCCC----------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecC
Q 047066          172 TEVPLLVNEFVKLPTI----------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVP  228 (256)
Q Consensus       172 ~~~~~lv~e~~~~~~l----------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~  228 (256)
                      .+..++||||+++++|          ++.....++.|++             +||||+|||++.++.+||+|||++..+.
T Consensus       172 ~~~~~lv~e~~~g~~L~~~l~~~~~l~~~~~~~i~~qi~~~L~~LH~~gi~H~Dlkp~NIl~~~~~~ikl~DfG~~~~~~  251 (365)
T 2y7j_A          172 SSFMFLVFDLMRKGELFDYLTEKVALSEKETRSIMRSLLEAVSFLHANNIVHRDLKPENILLDDNMQIRLSDFGFSCHLE  251 (365)
T ss_dssp             SSEEEEEECCCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECCCTTCEECC
T ss_pred             CCEEEEEEEeCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEECCCCCEEEEecCcccccC
Confidence            9999999999998664          5555566666665             5999999999999999999999998876


Q ss_pred             CCCceeeeeeeecccc
Q 047066          229 IDETQLSTMVQGTLGY  244 (256)
Q Consensus       229 ~~~~~~~~~~~Gt~~y  244 (256)
                      ....  .....||+.|
T Consensus       252 ~~~~--~~~~~gt~~y  265 (365)
T 2y7j_A          252 PGEK--LRELCGTPGY  265 (365)
T ss_dssp             TTCC--BCCCCSCGGG
T ss_pred             CCcc--cccCCCCCCc
Confidence            4432  2345699999

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*

Probab=99.86  E-value=6.4e-22  Score=166.44  Aligned_cols=160  Identities=24%  Similarity=0.446  Sum_probs=112.8

Q ss_pred             HHHHhhcCCCcccceeeeeCceEEEEEEEC----CCcEEEEEEeccc--ChhHHHHHHHHHHHHHhCCCCcccceeeEEE
Q 047066           97 GELKIATNNYAYDRMIGRGGYGTVFLGSLS----DNKAIAIKKSRIV--YQSQIEQCINKVVVLSQINHRNVVGLLGCCL  170 (256)
Q Consensus        97 ~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~----~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~  170 (256)
                      .++.+..++|.+.+.||+|+||.||+|...    ++..||+|.+...  .....+.+.+|+.+++.++||||+++++++.
T Consensus        27 ~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~  106 (313)
T 3brb_A           27 EDVVIDRNLLILGKILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSSQREIEEFLSEAACMKDFSHPNVIRLLGVCI  106 (313)
T ss_dssp             TTTBCCGGGEEEEEEEEC-CCCCEEEEEEECTTSCEEEEEEEEC---CCCHHHHHHHHHHHHHHHTCCCTTBCCCCEEEE
T ss_pred             HhcccCHHHeeeccceeecCCeEEEEEEEeccCCceeEEEEEEEeccccchhHHHHHHHHHHHHhcCCCCCeeeeeEEEe
Confidence            445566788999999999999999999853    3458999988643  3445578999999999999999999999998


Q ss_pred             ECC-----EEEEEEecCCCCC----------------CCHHHHHHHHHHHH-------------hccCCCcEEEcCCCcE
Q 047066          171 ETE-----VPLLVNEFVKLPT----------------ISWEVRIRIAAETA-------------EDIKSINILLDDNYTT  216 (256)
Q Consensus       171 ~~~-----~~~lv~e~~~~~~----------------l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~  216 (256)
                      ..+     ..+++|||+++++                +++.....++.+++             +||||+|||++.++.+
T Consensus       107 ~~~~~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~dikp~NIli~~~~~~  186 (313)
T 3brb_A          107 EMSSQGIPKPMVILPFMKYGDLHTYLLYSRLETGPKHIPLQTLLKFMVDIALGMEYLSNRNFLHRDLAARNCMLRDDMTV  186 (313)
T ss_dssp             C-------CEEEEEECCTTCBHHHHHHHTTBTTSCCCCCHHHHHHHHHHHHHHHHHHHTTTCCCCCCSGGGEEECTTSCE
T ss_pred             eccccCCcccEEEEecccCCCHHHHHHHhhhhcCCccCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCcceEEEcCCCcE
Confidence            654     3599999998755                45566667777665             5999999999999999


Q ss_pred             EEEecCCceecCCCCcee-eeeeeecccc----cccccCCCCCCC
Q 047066          217 KVCDFGASKLVPIDETQL-STMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       217 ki~DFGla~~~~~~~~~~-~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      ||+|||+++......... .....|++.|    .+.+..++.++|
T Consensus       187 kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~D  231 (313)
T 3brb_A          187 CVADFGLSKKIYSGDYYRQGRIAKMPVKWIAIESLADRVYTSKSD  231 (313)
T ss_dssp             EECSCSCC----------------CCGGGSCHHHHHSSCCCHHHH
T ss_pred             EEeecCcceecccccccCcccccCCCccccCchhhcCCCccchhh
Confidence            999999998765433221 2234577777    444555666554

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}

Probab=99.86  E-value=7.5e-22  Score=164.40  Aligned_cols=140  Identities=24%  Similarity=0.298  Sum_probs=109.4

Q ss_pred             CCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEecC
Q 047066          104 NNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEFV  182 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~  182 (256)
                      +.|....+||+|+||.||+|... ++..||+|.+........+.+.+|+.+++.++||||+++++++...+..+++|||+
T Consensus        22 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~  101 (295)
T 2clq_A           22 DENGDRVVLGKGTYGIVYAGRDLSNQVRIAIKEIPERDSRYSQPLHEEIALHKHLKHKNIVQYLGSFSENGFIKIFMEQV  101 (295)
T ss_dssp             CTTSSBCEEEECSSSEEEEEEETTTCCEEEEEEEECCCC---HHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEECC
T ss_pred             cCCCCcEEEeecCcEEEEEEEECCCCeEEEEEEccCCchHHHHHHHHHHHHHHhCCCCCEeeEeeEEEeCCcEEEEEEeC
Confidence            34555569999999999999974 68899999987666556678999999999999999999999999999999999999


Q ss_pred             CCCCC-------------CHHHHHHHHHHHH-------------hccCCCcEEEcC-CCcEEEEecCCceecCCCCceee
Q 047066          183 KLPTI-------------SWEVRIRIAAETA-------------EDIKSINILLDD-NYTTKVCDFGASKLVPIDETQLS  235 (256)
Q Consensus       183 ~~~~l-------------~~~~~~~~~~~i~-------------rdlk~~NiLi~~-~~~~ki~DFGla~~~~~~~~~~~  235 (256)
                      ++++|             ++.....++.+++             +||||+||+++. ++.+||+|||+++........ .
T Consensus       102 ~~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~~kl~Dfg~~~~~~~~~~~-~  180 (295)
T 2clq_A          102 PGGSLSALLRSKWGPLKDNEQTIGFYTKQILEGLKYLHDNQIVHRDIKGDNVLINTYSGVLKISDFGTSKRLAGINPC-T  180 (295)
T ss_dssp             SEEEHHHHHHHTTCCCTTCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEETTTCCEEECCTTTCEESCC------
T ss_pred             CCCCHHHHHHhhccCCCccHHHHHHHHHHHHHHHHHHHhCCEEccCCChhhEEEECCCCCEEEeecccccccCCCCCc-c
Confidence            87554             3444445555555             599999999987 899999999999876533221 2


Q ss_pred             eeeeecccc
Q 047066          236 TMVQGTLGY  244 (256)
Q Consensus       236 ~~~~Gt~~y  244 (256)
                      ....||+.|
T Consensus       181 ~~~~~~~~y  189 (295)
T 2clq_A          181 ETFTGTLQY  189 (295)
T ss_dssp             CCCCCCGGG
T ss_pred             cccCCCccc
Confidence            334588888

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=99.86  E-value=1.1e-21  Score=166.76  Aligned_cols=157  Identities=22%  Similarity=0.347  Sum_probs=115.3

Q ss_pred             HhhcCCCcccceeeeeCceEEEEEEECC-----CcEEEEEEecccC-hhHHHHHHHHHHHHHhCCCCcccceeeEEEECC
Q 047066          100 KIATNNYAYDRMIGRGGYGTVFLGSLSD-----NKAIAIKKSRIVY-QSQIEQCINKVVVLSQINHRNVVGLLGCCLETE  173 (256)
Q Consensus       100 ~~~~~~~~~~~~lg~G~~g~V~~~~~~~-----~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~  173 (256)
                      ++..++|.+.+.||+|+||.||+|....     +..||+|.+.... ......+.+|+.+++.++||||+++++++...+
T Consensus        40 ~i~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~  119 (333)
T 1mqb_A           40 EIHPSCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNIIRLEGVISKYK  119 (333)
T ss_dssp             BCCTTTEEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSS
T ss_pred             cCChHHhhcccEEecCCCeEEEEEEEecCCCCccccEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCC
Confidence            3455788899999999999999998642     2469999987543 445567999999999999999999999999999


Q ss_pred             EEEEEEecCCCCC-----------CCHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCC
Q 047066          174 VPLLVNEFVKLPT-----------ISWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPI  229 (256)
Q Consensus       174 ~~~lv~e~~~~~~-----------l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~  229 (256)
                      ..++||||+++++           +++.....++.+++             +||||+|||++.++.+||+|||+++....
T Consensus       120 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~~~~~~~  199 (333)
T 1mqb_A          120 PMMIITEYMENGALDKFLREKDGEFSVLQLVGMLRGIAAGMKYLANMNYVHRDLAARNILVNSNLVCKVSDFGLSRVLED  199 (333)
T ss_dssp             SEEEEEECCTTEEHHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTCCEEECCCCC------
T ss_pred             CcEEEEeCCCCCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCChheEEECCCCcEEECCCCcchhhcc
Confidence            9999999998744           45666666776665             59999999999999999999999987654


Q ss_pred             CCcee--eeeeeecccc----cccccCCCCCCC
Q 047066          230 DETQL--STMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       230 ~~~~~--~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      .....  .....||+.|    .+.+..++.++|
T Consensus       200 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~D  232 (333)
T 1mqb_A          200 DPEATYTTSGGKIPIRWTAPEAISYRKFTSASD  232 (333)
T ss_dssp             -----------CCCGGGSCHHHHHSCCCCHHHH
T ss_pred             ccccccccCCCCccccccCchhcccCCCCchhh
Confidence            32221  1223467778    444556666654

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A

Probab=99.86  E-value=1.3e-21  Score=163.30  Aligned_cols=152  Identities=25%  Similarity=0.380  Sum_probs=112.9

Q ss_pred             CCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccChhHHHHHHHHHHHHHhCCCCcccceeeEEEE-----------
Q 047066          104 NNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLE-----------  171 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~-----------  171 (256)
                      ++|++.+.||+|+||.||+|... +++.||+|.+... ....+.+.+|+.+++.++||||+++++++..           
T Consensus         6 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~   84 (303)
T 1zy4_A            6 SDFEEIAVLGQGAFGQVVKARNALDSRYYAIKKIRHT-EEKLSTILSEVMLLASLNHQYVVRYYAAWLERRNFVKPMTAV   84 (303)
T ss_dssp             HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEEE-HHHHHHHHHHHHHHTTCCCTTBCCEEEEEEECCCCCC-----
T ss_pred             ccchhhheeccCCcEEEEEEEEcCCCeEEEEEEEecc-HHHHHHHHHHHHHHHhcCchHHHHHHHHHHhhcchhhhhccc
Confidence            57899999999999999999975 7899999988543 3445788999999999999999999998865           


Q ss_pred             --CCEEEEEEecCCCCCCC-----------HHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCce
Q 047066          172 --TEVPLLVNEFVKLPTIS-----------WEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASK  225 (256)
Q Consensus       172 --~~~~~lv~e~~~~~~l~-----------~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~  225 (256)
                        .+..+++|||+++++|.           ......++.|++             +||||+|||++.++.+||+|||+++
T Consensus        85 ~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~i~H~dlkp~Nil~~~~~~~kl~dfg~~~  164 (303)
T 1zy4_A           85 KKKSTLFIQMEYCENGTLYDLIHSENLNQQRDEYWRLFRQILEALSYIHSQGIIHRDLKPMNIFIDESRNVKIGDFGLAK  164 (303)
T ss_dssp             -CEEEEEEEEECCCSCBHHHHHHHSCGGGCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTSCEEECCCCCCS
T ss_pred             ccCCceEEEEecCCCCCHHHhhhccccccchHHHHHHHHHHHHHHHHHHhCCeecccCCHHhEEEcCCCCEEEeeCcchh
Confidence              35689999999987753           334445555554             5999999999999999999999998


Q ss_pred             ecCCCC-------------ceeeeeeeecccc----ccc-ccCCCCCCC
Q 047066          226 LVPIDE-------------TQLSTMVQGTLGY----YLH-TSQGTLNKE  256 (256)
Q Consensus       226 ~~~~~~-------------~~~~~~~~Gt~~y----~~~-~~~~t~ksD  256 (256)
                      ......             ........||+.|    .+. .+.++.++|
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~D  213 (303)
T 1zy4_A          165 NVHRSLDILKLDSQNLPGSSDNLTSAIGTAMYVATEVLDGTGHYNEKID  213 (303)
T ss_dssp             CTTC-------------------------CTTSCHHHHTSCSCCCTHHH
T ss_pred             hcccccchhccccccccccccccccCCCcccccCcccccCCCCCcchhh
Confidence            764321             1112334688888    222 345677665

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*

Probab=99.86  E-value=1.7e-21  Score=165.17  Aligned_cols=156  Identities=22%  Similarity=0.231  Sum_probs=120.7

Q ss_pred             HHhhcCCCccc-ceeeeeCceEEEEEEEC-CCcEEEEEEecccC--hhHHHHHHHHHHHHHhC-CCCcccceeeEEEECC
Q 047066           99 LKIATNNYAYD-RMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY--QSQIEQCINKVVVLSQI-NHRNVVGLLGCCLETE  173 (256)
Q Consensus        99 ~~~~~~~~~~~-~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~  173 (256)
                      .+...+.|.+. +.||+|+||.||+|... +++.||+|.+....  ......+.+|+.++..+ +||||+++++++...+
T Consensus        23 ~~~~~~~y~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~iv~~~~~~~~~~  102 (327)
T 3lm5_A           23 MENFNNFYILTSKELGRGKFAVVRQCISKSTGQEYAAKFLKKRRRGQDCRAEILHEIAVLELAKSCPRVINLHEVYENTS  102 (327)
T ss_dssp             HHHHHHHEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESEETTEECHHHHHHHHHHHHHTTTCTTBCCEEEEEECSS
T ss_pred             HHhhhhEEeeccceeCCCCCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHHhccCCCCEEEEEEEEEeCC
Confidence            33444567776 89999999999999976 68999999876432  33457789999999999 5799999999999999


Q ss_pred             EEEEEEecCCCCC------------CCHHHHHHHHHHHH-------------hccCCCcEEEcC---CCcEEEEecCCce
Q 047066          174 VPLLVNEFVKLPT------------ISWEVRIRIAAETA-------------EDIKSINILLDD---NYTTKVCDFGASK  225 (256)
Q Consensus       174 ~~~lv~e~~~~~~------------l~~~~~~~~~~~i~-------------rdlk~~NiLi~~---~~~~ki~DFGla~  225 (256)
                      ..++||||+.+++            +++.....++.|++             +||||+|||++.   ++.+||+|||+++
T Consensus       103 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~ql~~~L~~LH~~givH~Dikp~NIl~~~~~~~~~~kL~Dfg~a~  182 (327)
T 3lm5_A          103 EIILILEYAAGGEIFSLCLPELAEMVSENDVIRLIKQILEGVYYLHQNNIVHLDLKPQNILLSSIYPLGDIKIVDFGMSR  182 (327)
T ss_dssp             EEEEEEECCTTEEGGGGGSSCC-CCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEESCBTTBCCEEECCGGGCE
T ss_pred             eEEEEEEecCCCcHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHCCeecCcCChHHEEEecCCCCCcEEEeeCcccc
Confidence            9999999998743            56666777777765             699999999987   7899999999999


Q ss_pred             ecCCCCceeeeeeeecccc----cccccCCCCCCC
Q 047066          226 LVPIDETQLSTMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       226 ~~~~~~~~~~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      .......  .....||+.|    .+.+..++.++|
T Consensus       183 ~~~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~D  215 (327)
T 3lm5_A          183 KIGHACE--LREIMGTPEYLAPEILNYDPITTATD  215 (327)
T ss_dssp             EC-----------CCCGGGCCHHHHTTCCCCTHHH
T ss_pred             ccCCccc--cccccCCcCccCCeeecCCCCCchhh
Confidence            8754322  2335699999    555667777665

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A*

Probab=99.86  E-value=1.1e-21  Score=166.18  Aligned_cols=158  Identities=23%  Similarity=0.285  Sum_probs=109.2

Q ss_pred             HHHHhhcCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC-hhHHHHHHHHHH-HHHhCCCCcccceeeEEEECC
Q 047066           97 GELKIATNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY-QSQIEQCINKVV-VLSQINHRNVVGLLGCCLETE  173 (256)
Q Consensus        97 ~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~E~~-~l~~l~h~niv~l~~~~~~~~  173 (256)
                      ..+.+..++|++.+.||+|+||.||+|..+ +++.||+|.+.... ......+..|.. +++.++||||+++++++...+
T Consensus        15 ~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~~~~h~niv~~~~~~~~~~   94 (327)
T 3aln_A           15 QHWDFTAEDLKDLGEIGRGAYGSVNKMVHKPSGQIMAVKRIRSTVDEKEQKQLLMDLDVVMRSSDCPYIVQFYGALFREG   94 (327)
T ss_dssp             EEECCCSCSEEC-CEEEECSSEEEEEEEETTTTEEEEEEEEECCCCHHHHHHHHHHHHHHHSSCCCTTBCCEEEEEECSS
T ss_pred             HhcccCHHHhhehheeccCCCEEEEEEEEcCCCCEEEEEEeecccCchHHHHHHHHHHHHHHcCCCCcEeeeeeEEEeCC
Confidence            445566789999999999999999999975 68999999886543 344456667766 667779999999999999999


Q ss_pred             EEEEEEecCCC--------------CCCCHHHHHHHHHHHH--------------hccCCCcEEEcCCCcEEEEecCCce
Q 047066          174 VPLLVNEFVKL--------------PTISWEVRIRIAAETA--------------EDIKSINILLDDNYTTKVCDFGASK  225 (256)
Q Consensus       174 ~~~lv~e~~~~--------------~~l~~~~~~~~~~~i~--------------rdlk~~NiLi~~~~~~ki~DFGla~  225 (256)
                      ..+++|||+++              +.+++.....++.+++              +||||+|||++.++.+||+|||+++
T Consensus        95 ~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~ivH~dlkp~NIll~~~~~~kl~Dfg~~~  174 (327)
T 3aln_A           95 DCWICMELMSTSFDKFYKYVYSVLDDVIPEEILGKITLATVKALNHLKENLKIIHRDIKPSNILLDRSGNIKLCDFGISG  174 (327)
T ss_dssp             EEEEEECCCSEEHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHHSCCCSCCCGGGEEEETTTEEEECCCSSSC
T ss_pred             ceEEEEeecCCChHHHHHHHHhhhcccCcHHHHHHHHHHHHHHHHHHhccCCEeECCCCHHHEEEcCCCCEEEccCCCce
Confidence            99999999976              3345555555555444              6999999999999999999999998


Q ss_pred             ecCCCCceeeeeeeecccc----cc----cccCCCCCCC
Q 047066          226 LVPIDETQLSTMVQGTLGY----YL----HTSQGTLNKE  256 (256)
Q Consensus       226 ~~~~~~~~~~~~~~Gt~~y----~~----~~~~~t~ksD  256 (256)
                      .......  .....||+.|    .+    .+..++.++|
T Consensus       175 ~~~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~~~~~D  211 (327)
T 3aln_A          175 QLVDSIA--KTRDAGCRPYMAPERIDPSASRQGYDVRSD  211 (327)
T ss_dssp             C--------------------------------CCSHHH
T ss_pred             ecccccc--cccCCCCccccCceeeccccCcCCCCchhh
Confidence            7654322  2233588888    22    3455666655

>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*

Probab=99.86  E-value=7e-22  Score=181.51  Aligned_cols=153  Identities=22%  Similarity=0.315  Sum_probs=113.7

Q ss_pred             cCCCccc-ceeeeeCceEEEEEEEC---CCcEEEEEEecccC--hhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEE
Q 047066          103 TNNYAYD-RMIGRGGYGTVFLGSLS---DNKAIAIKKSRIVY--QSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPL  176 (256)
Q Consensus       103 ~~~~~~~-~~lg~G~~g~V~~~~~~---~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~  176 (256)
                      ...+.+. +.||+|+||.||+|.+.   .++.||||.++...  ....+.+.+|+.+++.++||||+++++++.. +..+
T Consensus       367 ~~~~~l~~~~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~-~~~~  445 (635)
T 4fl3_A          367 RKLLTLEDKELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICEA-ESWM  445 (635)
T ss_dssp             GGGEEEEEEEEEECSSEEEEEEEEECSSCEEEEEEEEECGGGGCGGGHHHHHHHHHHHHHCCCTTBCCEEEEEES-SSEE
T ss_pred             chhccccCCEeccCCCEEEEEEEEcCCCcceEEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEec-CCEE
Confidence            3334433 47999999999999653   46789999986533  3446789999999999999999999999965 5588


Q ss_pred             EEEecCCCCC----------CCHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCce
Q 047066          177 LVNEFVKLPT----------ISWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQ  233 (256)
Q Consensus       177 lv~e~~~~~~----------l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~  233 (256)
                      +||||+++++          +++.....++.|++             |||||+|||++.++.+||+|||+|+.+..+...
T Consensus       446 lv~E~~~~g~L~~~l~~~~~l~~~~~~~i~~qi~~~L~yLH~~~iiHrDLkp~NILl~~~~~~kL~DFGla~~~~~~~~~  525 (635)
T 4fl3_A          446 LVMEMAELGPLNKYLQQNRHVKDKNIIELVHQVSMGMKYLEESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENY  525 (635)
T ss_dssp             EEEECCTTEEHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEEETTEEEECCTTHHHHTTC----
T ss_pred             EEEEccCCCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHCCEeCCCCChHhEEEeCCCCEEEEEcCCccccccCccc
Confidence            9999998865          45666667777665             699999999999999999999999887544322


Q ss_pred             --eeeeeeecccc----cccccCCCCCCC
Q 047066          234 --LSTMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       234 --~~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                        ......||+.|    .+.+..++.++|
T Consensus       526 ~~~~~~~~~t~~y~APE~~~~~~~~~~sD  554 (635)
T 4fl3_A          526 YKAQTHGKWPVKWYAPECINYYKFSSKSD  554 (635)
T ss_dssp             ---------CGGGSCHHHHHHCCCCHHHH
T ss_pred             cccccCCCCceeeeChhhhcCCCCCcHHH
Confidence              22334577888    556667777766

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...

Probab=99.86  E-value=7.3e-22  Score=164.91  Aligned_cols=153  Identities=27%  Similarity=0.434  Sum_probs=115.7

Q ss_pred             CCCcccceeeeeCceEEEEEEECC----CcEEEEEEecccC-hhHHHHHHHHHHHHHhCCCCcccceeeEEEE-CCEEEE
Q 047066          104 NNYAYDRMIGRGGYGTVFLGSLSD----NKAIAIKKSRIVY-QSQIEQCINKVVVLSQINHRNVVGLLGCCLE-TEVPLL  177 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~V~~~~~~~----~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~-~~~~~l  177 (256)
                      .+|++.+.||+|+||.||+|...+    ...+|+|.+.... ....+.+.+|+.++++++||||+++++++.. .+..++
T Consensus        25 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~  104 (298)
T 3f66_A           25 LIVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLV  104 (298)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEEC-----CEEEEEEEETTCCSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSSCCEE
T ss_pred             eehhhcceeeecCCceEEEEEEecCCCceeEEEEEecccCCCHHHHHHHHHHHHHHHhCCCCCEeeeeeEEEcCCCceEE
Confidence            468888999999999999998642    2368999886543 4556789999999999999999999998754 567899


Q ss_pred             EEecCCCCCC-----------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCce
Q 047066          178 VNEFVKLPTI-----------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQ  233 (256)
Q Consensus       178 v~e~~~~~~l-----------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~  233 (256)
                      +|||+++++|           ++.....++.+++             +||||+|||++.++.+||+|||+++........
T Consensus       105 v~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~i~H~dikp~Nil~~~~~~~kl~Dfg~a~~~~~~~~~  184 (298)
T 3f66_A          105 VLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKYLASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYY  184 (298)
T ss_dssp             EEECCTTCBHHHHHHCTTCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECTTCCEEECSCGGGCCCSCGGGC
T ss_pred             EEeCCCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhCCccCCCCchheEEECCCCCEEECcccccccccccchh
Confidence            9999988664           4555556666655             699999999999999999999999876543221


Q ss_pred             ---eeeeeeecccc----cccccCCCCCCC
Q 047066          234 ---LSTMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       234 ---~~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                         ......||+.|    .+.+..++.++|
T Consensus       185 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~D  214 (298)
T 3f66_A          185 SVHNKTGAKLPVKWMALESLQTQKFTTKSD  214 (298)
T ss_dssp             BC-----CCBCGGGSCHHHHHHCCCCHHHH
T ss_pred             ccccccCCCCCccccChHHhcCCCCChHHH
Confidence               12334577788    444556666554

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*

Probab=99.86  E-value=5.5e-22  Score=164.36  Aligned_cols=156  Identities=19%  Similarity=0.333  Sum_probs=116.2

Q ss_pred             HhhcCCCcccceeeeeCceEEEEEEECC----CcEEEEEEeccc-ChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCE
Q 047066          100 KIATNNYAYDRMIGRGGYGTVFLGSLSD----NKAIAIKKSRIV-YQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEV  174 (256)
Q Consensus       100 ~~~~~~~~~~~~lg~G~~g~V~~~~~~~----~~~vavK~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~  174 (256)
                      .+..++|.+.+.||+|+||.||+|....    +..||+|.+... .....+.+.+|+.+++.++||||+++++++.. +.
T Consensus         8 ~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~-~~   86 (281)
T 3cc6_A            8 GIAREDVVLNRILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKEKFMSEAVIMKNLDHPHIVKLIGIIEE-EP   86 (281)
T ss_dssp             SCCGGGEEEEEEEEECSSSEEEEEEEECTTCCEEEEEEEECCTTSCHHHHHHHHHHHHHHHHHCCTTBCCEEEEECS-SS
T ss_pred             eecccceEEEEEEEecCCeeEEEeEEcCCCCCcceEEEEecccccCchHHHHHHHHHHHHHhCCCCCcceEEEEEcC-CC
Confidence            3455789999999999999999998542    346999988654 34556789999999999999999999999865 45


Q ss_pred             EEEEEecCCCCCC-----------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCC
Q 047066          175 PLLVNEFVKLPTI-----------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPID  230 (256)
Q Consensus       175 ~~lv~e~~~~~~l-----------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~  230 (256)
                      .+++|||+++++|           ++.....++.+++             +||||+|||++.++.+||+|||+++.....
T Consensus        87 ~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~  166 (281)
T 3cc6_A           87 TWIIMELYPYGELGHYLERNKNSLKVLTLVLYSLQICKAMAYLESINCVHRDIAVRNILVASPECVKLGDFGLSRYIEDE  166 (281)
T ss_dssp             CEEEEECCTTCBHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCSGGGEEEEETTEEEECCCCGGGCC---
T ss_pred             CEEEEecCCCCCHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHCCcccCCCccceEEECCCCcEEeCccCCCcccccc
Confidence            6899999988654           4555555565555             599999999999999999999999876544


Q ss_pred             Cceeeeeeeecccc----cccccCCCCCCC
Q 047066          231 ETQLSTMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       231 ~~~~~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      .........||+.|    .+.+..++.++|
T Consensus       167 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~D  196 (281)
T 3cc6_A          167 DYYKASVTRLPIKWMSPESINFRRFTTASD  196 (281)
T ss_dssp             ------CCCCCGGGCCHHHHHHCCCCHHHH
T ss_pred             cccccccCCCCcceeCchhhccCCCCchhc
Confidence            33333344577788    444556666554

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.86  E-value=6.6e-22  Score=183.27  Aligned_cols=149  Identities=19%  Similarity=0.293  Sum_probs=119.5

Q ss_pred             hcCCCcccceeeeeCceEEEEEEEC--CCcEEEEEEeccc-ChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCE----
Q 047066          102 ATNNYAYDRMIGRGGYGTVFLGSLS--DNKAIAIKKSRIV-YQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEV----  174 (256)
Q Consensus       102 ~~~~~~~~~~lg~G~~g~V~~~~~~--~~~~vavK~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~----  174 (256)
                      ..++|++.+.||+|+||.||++.+.  +++.||+|.+... .....+.+.+|+.++.+++||||+++++++...+.    
T Consensus        78 ~~~~y~i~~~lg~G~~g~Vy~a~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~~  157 (681)
T 2pzi_A           78 VAGQYEVKGCIAHGGLGWIYLALDRNVNGRPVVLKGLVHSGDAEAQAMAMAERQFLAEVVHPSIVQIFNFVEHTDRHGDP  157 (681)
T ss_dssp             ETTTEEEEEEEEEETTEEEEEEEEGGGTTEEEEEEESCSSCCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEEECTTSCE
T ss_pred             eCCceEEEEEEeeCCCeEEEEEEEcCCCCcEEEEEEeCccCCHHHHHHHHHHHHHHHhcCCCCcCeEeeeEeecCCCCCc
Confidence            3478999999999999999999975  5889999987643 34555778999999999999999999999987655    


Q ss_pred             -EEEEEecCCCCCC--------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCc
Q 047066          175 -PLLVNEFVKLPTI--------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDET  232 (256)
Q Consensus       175 -~~lv~e~~~~~~l--------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~  232 (256)
                       .++||||+++++|        ++...+.++.|++             |||||+|||++.+ .+||+|||+++.....  
T Consensus       158 ~~~lv~E~~~g~~L~~~~~~~l~~~~~~~~~~qi~~aL~~lH~~giiHrDlkp~NIll~~~-~~kl~DFG~a~~~~~~--  234 (681)
T 2pzi_A          158 VGYIVMEYVGGQSLKRSKGQKLPVAEAIAYLLEILPALSYLHSIGLVYNDLKPENIMLTEE-QLKLIDLGAVSRINSF--  234 (681)
T ss_dssp             EEEEEEECCCCEECC----CCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECSS-CEEECCCTTCEETTCC--
T ss_pred             eeEEEEEeCCCCcHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHCCCeecccChHHeEEeCC-cEEEEecccchhcccC--
Confidence             7999999988654        5666677777665             6999999999986 8999999999987543  


Q ss_pred             eeeeeeeecccc---cccccCCCCCCC
Q 047066          233 QLSTMVQGTLGY---YLHTSQGTLNKE  256 (256)
Q Consensus       233 ~~~~~~~Gt~~y---~~~~~~~t~ksD  256 (256)
                         ....||+.|   +...+..+.++|
T Consensus       235 ---~~~~gt~~y~aPE~~~~~~~~~sD  258 (681)
T 2pzi_A          235 ---GYLYGTPGFQAPEIVRTGPTVATD  258 (681)
T ss_dssp             ---SCCCCCTTTSCTTHHHHCSCHHHH
T ss_pred             ---CccCCCccccCHHHHcCCCCCcee
Confidence               334699999   333334465554

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A

Probab=99.86  E-value=8.2e-22  Score=163.78  Aligned_cols=155  Identities=19%  Similarity=0.291  Sum_probs=107.9

Q ss_pred             HhhcCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC-hhHH-HHHHHHHHHHHhCCCCcccceeeEEEECCEEE
Q 047066          100 KIATNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY-QSQI-EQCINKVVVLSQINHRNVVGLLGCCLETEVPL  176 (256)
Q Consensus       100 ~~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~-~~~~-~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~  176 (256)
                      ++..++|++.+.||+|+||.||+|... +++.||+|.+.... .... +.+.++...++.++||||+++++++...+..+
T Consensus         3 ~i~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~iv~~~~~~~~~~~~~   82 (290)
T 3fme_A            3 EVKADDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVNSQEQKRLLMDLDISMRTVDCPFTVTFYGALFREGDVW   82 (290)
T ss_dssp             CCCGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEC---CHHHHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSSEE
T ss_pred             cccHHhhhhHHhcCCCCCeEEEEEEecCCCeEEEEEEeecccCcHHHHHHHHHHHHHHHhCCCCeEEEEeeeeeccCCEE
Confidence            345678999999999999999999974 78999999886543 2222 33444555578889999999999999999999


Q ss_pred             EEEecCCC-------------CCCCHHHHHHHHHHHH--------------hccCCCcEEEcCCCcEEEEecCCceecCC
Q 047066          177 LVNEFVKL-------------PTISWEVRIRIAAETA--------------EDIKSINILLDDNYTTKVCDFGASKLVPI  229 (256)
Q Consensus       177 lv~e~~~~-------------~~l~~~~~~~~~~~i~--------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~  229 (256)
                      ++|||+++             +.+++.....++.|++              +||||+|||++.++.+||+|||+++....
T Consensus        83 lv~e~~~~~l~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~  162 (290)
T 3fme_A           83 ICMELMDTSLDKFYKQVIDKGQTIPEDILGKIAVSIVKALEHLHSKLSVIHRDVKPSNVLINALGQVKMCDFGISGYLVD  162 (290)
T ss_dssp             EEEECCSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHSCCCCCCCSGGGCEECTTCCEEBCCC--------
T ss_pred             EEEehhccchHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhhcCCeecCCCCHHHEEECCCCCEEEeecCCcccccc
Confidence            99999975             3466666666666554              69999999999999999999999987654


Q ss_pred             CCceeeeeeeecccc----c----ccccCCCCCCC
Q 047066          230 DETQLSTMVQGTLGY----Y----LHTSQGTLNKE  256 (256)
Q Consensus       230 ~~~~~~~~~~Gt~~y----~----~~~~~~t~ksD  256 (256)
                      ...  .....||+.|    .    ..+..++.++|
T Consensus       163 ~~~--~~~~~~t~~y~aPE~~~~~~~~~~~~~~~D  195 (290)
T 3fme_A          163 DVA--KDIDAGCKPYMAPERINPELNQKGYSVKSD  195 (290)
T ss_dssp             ---------CCCCCCSCHHHHSCCTTC--CCHHHH
T ss_pred             ccc--ccccCCCccccChhhcChhhcCcCCCcHHH
Confidence            322  2334589988    2    24555666554

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7

Probab=99.86  E-value=2.9e-22  Score=173.09  Aligned_cols=152  Identities=27%  Similarity=0.445  Sum_probs=107.4

Q ss_pred             CCcccceeeeeCceEEEEEEEC--CC--cEEEEEEeccc-ChhHHHHHHHHHHHHHhCCCCcccceeeEEEE-CCEEEEE
Q 047066          105 NYAYDRMIGRGGYGTVFLGSLS--DN--KAIAIKKSRIV-YQSQIEQCINKVVVLSQINHRNVVGLLGCCLE-TEVPLLV  178 (256)
Q Consensus       105 ~~~~~~~lg~G~~g~V~~~~~~--~~--~~vavK~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~-~~~~~lv  178 (256)
                      .|++.+.||+|+||.||+|...  ++  ..+|+|.++.. .....+++.+|+.++++++||||+++++++.. .+..+++
T Consensus        90 ~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~~lv  169 (373)
T 3c1x_A           90 IVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVV  169 (373)
T ss_dssp             EEEEEEEEECCSSSEEEEEEEEETTTEEEEEEEEECCSCSCSHHHHHHHHHHTTSTTCCCTTBCCCCEEECCCSSCCEEE
T ss_pred             eeecCcEeeeCCCeEEEEEEEECCCCcEEEEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEEcCCCCeEEE
Confidence            4667789999999999999853  22  36899987643 34566889999999999999999999998764 5678999


Q ss_pred             EecCCCCCC-----------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCce-
Q 047066          179 NEFVKLPTI-----------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQ-  233 (256)
Q Consensus       179 ~e~~~~~~l-----------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~-  233 (256)
                      |||+++++|           ++.....++.|++             |||||+|||+++++.+||+|||+++.+...... 
T Consensus       170 ~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~~~~kL~DFG~a~~~~~~~~~~  249 (373)
T 3c1x_A          170 LPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKFLASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDS  249 (373)
T ss_dssp             EECCTTCBHHHHHHCTTCCCBHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTCCEEECCC-------------
T ss_pred             EECCCCCCHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHHHCCEecCccchheEEECCCCCEEEeecccccccccccccc
Confidence            999988664           4455566666655             699999999999999999999999876443221 


Q ss_pred             --eeeeeeecccc----cccccCCCCCCC
Q 047066          234 --LSTMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       234 --~~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                        ......||+.|    .+.++.++.++|
T Consensus       250 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~D  278 (373)
T 3c1x_A          250 VHNKTGAKLPVKWMALESLQTQKFTTKSD  278 (373)
T ss_dssp             --------CCGGGSCHHHHHHCCCCHHHH
T ss_pred             ccccCCCCCcccccChHHhcCCCCCcHHH
Confidence              12234577788    455666776665

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*

Probab=99.86  E-value=3.1e-22  Score=165.61  Aligned_cols=154  Identities=19%  Similarity=0.356  Sum_probs=111.3

Q ss_pred             hHHHHhhcCCCcccceeeeeCceEEEEEEECCCcEEEEEEecccChhHHHHHHHHHHHHHhCCCCcccceeeEEEEC-CE
Q 047066           96 AGELKIATNNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLET-EV  174 (256)
Q Consensus        96 ~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~-~~  174 (256)
                      ...+.+..++|++.+.||+|+||.||++.. +++.||+|.++...  ..+.+.+|+.+++.++||||+++++++... +.
T Consensus        13 ~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~~--~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~   89 (278)
T 1byg_A           13 RSGWALNMKELKLLQTIGKGEFGDVMLGDY-RGNKVAVKCIKNDA--TAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGG   89 (278)
T ss_dssp             --CCBCCGGGEEEEEEEEECSSCEEEEEEE-TTEEEEEEECCCCC----HHHHHTHHHHTTCCCTTBCCEEEEECCC--C
T ss_pred             hccccCChhhceEEeEEecCCCceEEEEEE-cCCEEEEEEecchh--HHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCCc
Confidence            334555667899999999999999999988 58899999886543  446789999999999999999999997654 47


Q ss_pred             EEEEEecCCCCCC------------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCC
Q 047066          175 PLLVNEFVKLPTI------------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPI  229 (256)
Q Consensus       175 ~~lv~e~~~~~~l------------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~  229 (256)
                      .+++|||+++++|            ++.....++.+++             +||||+||+++.++.+||+|||+++....
T Consensus        90 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~~l~Dfg~~~~~~~  169 (278)
T 1byg_A           90 LYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGNNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASS  169 (278)
T ss_dssp             CEEEECCCTTEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECTTSCEEECCCCC------
T ss_pred             eEEEEecCCCCCHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHhCCccccCCCcceEEEeCCCcEEEeeccccccccc
Confidence            8999999999765            3333445555554             59999999999999999999999986543


Q ss_pred             CCceeeeeeeecccc----cccccCCCCCCC
Q 047066          230 DETQLSTMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       230 ~~~~~~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      ..    ....+|+.|    .+.+..++.++|
T Consensus       170 ~~----~~~~~~~~y~aPE~~~~~~~~~~~D  196 (278)
T 1byg_A          170 TQ----DTGKLPVKWTAPEALREKKFSTKSD  196 (278)
T ss_dssp             ----------CCTTTSCHHHHHHCCCCHHHH
T ss_pred             cc----cCCCccccccCHHHhCCCCCCchhc
Confidence            21    223477777    444455565554

>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...

Probab=99.86  E-value=3.1e-21  Score=163.34  Aligned_cols=148  Identities=18%  Similarity=0.259  Sum_probs=118.0

Q ss_pred             CCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccChhHHHHHHHHHHHHHhCC-CCcccceeeEEEE--CCEEEEEE
Q 047066          104 NNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVYQSQIEQCINKVVVLSQIN-HRNVVGLLGCCLE--TEVPLLVN  179 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~l~~~~~~--~~~~~lv~  179 (256)
                      ++|++.+.||+|+||.||+|... +++.||+|.+....   .+.+.+|+.+++.++ ||||+++++++..  ....+++|
T Consensus        36 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~---~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~~~~~~~lv~  112 (330)
T 3nsz_A           36 DDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPVK---KKKIKREIKILENLRGGPNIITLADIVKDPVSRTPALVF  112 (330)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECSCC---HHHHHHHHHHHHHHTTSTTBCCEEEEEECTTTCCEEEEE
T ss_pred             CceEEEEEecccCCeEEEEEEECCCCcEEEEEEecccc---hHHHHHHHHHHHHcCCCCCEEEeeeeeccCCCCceEEEE
Confidence            57899999999999999999864 68899999987533   366889999999996 9999999999997  66789999


Q ss_pred             ecCCCCCC-------CHHHHHHHHHHHH-------------hccCCCcEEEcCCC-cEEEEecCCceecCCCCceeeeee
Q 047066          180 EFVKLPTI-------SWEVRIRIAAETA-------------EDIKSINILLDDNY-TTKVCDFGASKLVPIDETQLSTMV  238 (256)
Q Consensus       180 e~~~~~~l-------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~-~~ki~DFGla~~~~~~~~~~~~~~  238 (256)
                      ||+.+++|       +......++.|++             +||||+|||++.++ .+||+|||+|+.......  ....
T Consensus       113 e~~~~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dikp~Nil~~~~~~~~kl~Dfg~a~~~~~~~~--~~~~  190 (330)
T 3nsz_A          113 EHVNNTDFKQLYQTLTDYDIRFYMYEILKALDYCHSMGIMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHPGQE--YNVR  190 (330)
T ss_dssp             ECCCCCCHHHHGGGCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEETTTTEEEECCCTTCEECCTTCC--CCSC
T ss_pred             eccCchhHHHHHHhCCHHHHHHHHHHHHHHHHHHHhCCeeeCCCCHHHEEEcCCCCEEEEEeCCCceEcCCCCc--cccc
Confidence            99998764       5555666666655             69999999999776 899999999987654332  2334


Q ss_pred             eecccc----cccc-cCCCCCCC
Q 047066          239 QGTLGY----YLHT-SQGTLNKE  256 (256)
Q Consensus       239 ~Gt~~y----~~~~-~~~t~ksD  256 (256)
                      .||+.|    .+.+ ..++.++|
T Consensus       191 ~~~~~y~aPE~~~~~~~~~~~~D  213 (330)
T 3nsz_A          191 VASRYFKGPELLVDYQMYDYSLD  213 (330)
T ss_dssp             CSCGGGCCHHHHTTCCCCCTHHH
T ss_pred             cccccccChhhhcCCCcCCchhh
Confidence            588888    2223 55676665

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7

Probab=99.86  E-value=8.2e-22  Score=164.40  Aligned_cols=152  Identities=25%  Similarity=0.359  Sum_probs=114.6

Q ss_pred             CCcccceeeeeCceEEEEEEEC-C---CcEEEEEEecccC-hhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEE-EEE
Q 047066          105 NYAYDRMIGRGGYGTVFLGSLS-D---NKAIAIKKSRIVY-QSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVP-LLV  178 (256)
Q Consensus       105 ~~~~~~~lg~G~~g~V~~~~~~-~---~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~-~lv  178 (256)
                      .|...+.||+|+||.||+|.+. +   +..+|+|.+.... ....+.+.+|+.+++.++||||+++++++...+.. +++
T Consensus        22 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~v  101 (298)
T 3pls_A           22 VTHSDRVIGKGHFGVVYHGEYIDQAQNRIQCAIKSLSRITEMQQVEAFLREGLLMRGLNHPNVLALIGIMLPPEGLPHVL  101 (298)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEECSSSCEEEEEEEEETTCCSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSSCCEEE
T ss_pred             EEccCceeccCCCceEEEEEEecCCCceeeeeeeeccccccHHHHHHHHHHHHHHHhCCCCCeeeEEEEEecCCCCcEEE
Confidence            4556689999999999999853 2   2379999887544 45567899999999999999999999999875554 999


Q ss_pred             EecCCCCCC-----------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCc--
Q 047066          179 NEFVKLPTI-----------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDET--  232 (256)
Q Consensus       179 ~e~~~~~~l-----------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~--  232 (256)
                      |||+.+++|           ++.....++.+++             +||||+|||++.++.+||+|||+++.+.....  
T Consensus       102 ~e~~~~~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~  181 (298)
T 3pls_A          102 LPYMCHGDLLQFIRSPQRNPTVKDLISFGLQVARGMEYLAEQKFVHRDLAARNCMLDESFTVKVADFGLARDILDREYYS  181 (298)
T ss_dssp             ECCCTTCBHHHHHHCTTCCCBHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECTTCCEEECCTTSSCTTTTGGGGC
T ss_pred             EecccCCCHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCcceEEEcCCCcEEeCcCCCcccccCCcccc
Confidence            999987554           4555566666655             69999999999999999999999986643321  


Q ss_pred             -eeeeeeeecccc----cccccCCCCCCC
Q 047066          233 -QLSTMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       233 -~~~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                       .......||+.|    ...+..++.++|
T Consensus       182 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~D  210 (298)
T 3pls_A          182 VQQHRHARLPVKWTALESLQTYRFTTKSD  210 (298)
T ss_dssp             SCCSSCTTCGGGGSCHHHHTTCCCCHHHH
T ss_pred             cccCcCCCCCccccChhhhccCCCChhhc
Confidence             112233577778    445556666654

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A*

Probab=99.86  E-value=4.2e-21  Score=158.95  Aligned_cols=136  Identities=21%  Similarity=0.285  Sum_probs=111.3

Q ss_pred             CCCcccceeeeeCceEEEEEEEC-CCcEEEEEEeccc--ChhHHHHHHHHHHHHHhC-CCCcccceeeEEEECCEEEEEE
Q 047066          104 NNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIV--YQSQIEQCINKVVVLSQI-NHRNVVGLLGCCLETEVPLLVN  179 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~lv~  179 (256)
                      ++|++.+.||+|+||.||+|... +++.||+|.+...  .......+.+|+..+..+ +||||+++++++...+..+++|
T Consensus        11 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~~~~l~~h~~iv~~~~~~~~~~~~~lv~   90 (289)
T 1x8b_A           11 TEFHELEKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLAGSVDEQNALREVYAHAVLGQHSHVVRYFSAWAEDDHMLIQN   90 (289)
T ss_dssp             HHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCCTTSHHHHHHHHHHHHHHHSCSCTTBCCEEEEEEETTEEEEEE
T ss_pred             chhhhhhhhcCCCceEEEEEEEcCCCceEEEEEecccccccHHHHHHHHHHHHHHHhCCCCCeeeeeeeeecCCeEEEEE
Confidence            57899999999999999999976 7899999988653  234456789999999999 9999999999999999999999


Q ss_pred             ecCCCCCC--------------CHHHHHHHHHHHH-------------hccCCCcEEEcCC-------------------
Q 047066          180 EFVKLPTI--------------SWEVRIRIAAETA-------------EDIKSINILLDDN-------------------  213 (256)
Q Consensus       180 e~~~~~~l--------------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~-------------------  213 (256)
                      ||+++++|              ++.....++.|++             +||||+|||++.+                   
T Consensus        91 e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~~ivH~Dikp~NIl~~~~~~~~~~~~~~~~~~~~~~~  170 (289)
T 1x8b_A           91 EYCNGGSLADAISENYRIMSYFKEAELKDLLLQVGRGLRYIHSMSLVHMDIKPSNIFISRTSIPNAASEEGDEDDWASNK  170 (289)
T ss_dssp             ECCTTCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEC--------------------C
T ss_pred             EecCCCcHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHHhCCEeecCCCHHHEEEcCCCCCcccccccccccccCCc
Confidence            99988665              4455556666655             5999999999844                   


Q ss_pred             CcEEEEecCCceecCCCCceeeeeeeecccc
Q 047066          214 YTTKVCDFGASKLVPIDETQLSTMVQGTLGY  244 (256)
Q Consensus       214 ~~~ki~DFGla~~~~~~~~~~~~~~~Gt~~y  244 (256)
                      ..+||+|||++........     ..||+.|
T Consensus       171 ~~~kl~Dfg~~~~~~~~~~-----~~gt~~y  196 (289)
T 1x8b_A          171 VMFKIGDLGHVTRISSPQV-----EEGDSRF  196 (289)
T ss_dssp             CCEEECCCTTCEETTCSCC-----CCCCGGG
T ss_pred             eEEEEcccccccccCCccc-----cCCCccc
Confidence            4799999999998754322     2488888

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}

Probab=99.86  E-value=3.6e-22  Score=168.17  Aligned_cols=132  Identities=23%  Similarity=0.313  Sum_probs=109.7

Q ss_pred             HHHHhhcCCCcccceeeeeCceEEEEEEE-CCCcEEEEEEecccChhHHHHHHHHHHHHHhCCCCcccceeeEEEE----
Q 047066           97 GELKIATNNYAYDRMIGRGGYGTVFLGSL-SDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLE----  171 (256)
Q Consensus        97 ~~~~~~~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~----  171 (256)
                      +.+.+..++|++.+.||+|+||.||++.. .+++.||+|.+........+.+.+|+.+++.++||||+++++++..    
T Consensus        22 ~~~~i~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~  101 (317)
T 2buj_A           22 HMVIIDNKHYLFIQKLGEGGFSYVDLVEGLHDGHFYALKRILCHEQQDREEAQREADMHRLFNHPNILRLVAYCLRERGA  101 (317)
T ss_dssp             EEEEETTEEEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEESSHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEEEETT
T ss_pred             cEEEECCeEEEEEEEecCCCCeEEEEEEecCCCcEEEEEEEecCCHHHHHHHHHHHHHHhhcCCCCeeeEEEEEEeccCC
Confidence            34455667899999999999999999997 4789999998876666677889999999999999999999999873    


Q ss_pred             CCEEEEEEecCCCCCC--------------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCc
Q 047066          172 TEVPLLVNEFVKLPTI--------------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGAS  224 (256)
Q Consensus       172 ~~~~~lv~e~~~~~~l--------------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla  224 (256)
                      .+..+++|||+.+++|              ++.....++.|++             +||||+|||++.++.+||+|||++
T Consensus       102 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~ivH~dlkp~NIl~~~~~~~kl~dfg~~  181 (317)
T 2buj_A          102 KHEAWLLLPFFKRGTLWNEIERLKDKGNFLTEDQILWLLLGICRGLEAIHAKGYAHRDLKPTNILLGDEGQPVLMDLGSM  181 (317)
T ss_dssp             EEEEEEEEECCTTCBHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTSCEEECCCSSC
T ss_pred             CceeEEEEEeCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEEEcCCCCEEEEecCcc
Confidence            3478999999988654              5556666776666             599999999999999999999998


Q ss_pred             eecC
Q 047066          225 KLVP  228 (256)
Q Consensus       225 ~~~~  228 (256)
                      ....
T Consensus       182 ~~~~  185 (317)
T 2buj_A          182 NQAC  185 (317)
T ss_dssp             EESC
T ss_pred             hhcc
Confidence            8653

>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*

Probab=99.86  E-value=4.6e-21  Score=168.49  Aligned_cols=150  Identities=21%  Similarity=0.227  Sum_probs=120.7

Q ss_pred             hcCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccChhHHHHHHHHHHHHHhC------CCCcccceeeEEEECCE
Q 047066          102 ATNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVYQSQIEQCINKVVVLSQI------NHRNVVGLLGCCLETEV  174 (256)
Q Consensus       102 ~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l------~h~niv~l~~~~~~~~~  174 (256)
                      ...+|++.+.||+|+||.||+|... +++.||+|.+... ....+.+.+|+.+++.+      +|+||+++++++...+.
T Consensus        95 ~~~ry~~~~~LG~G~fg~V~~a~~~~~~~~vAvK~~~~~-~~~~~~~~~E~~~l~~l~~~~~~~~~~iv~~~~~~~~~~~  173 (429)
T 3kvw_A           95 VAYRYEVLKVIGKGSFGQVVKAYDHKVHQHVALKMVRNE-KRFHRQAAEEIRILEHLRKQDKDNTMNVIHMLENFTFRNH  173 (429)
T ss_dssp             ETTTEEEEEEEEESSSEEEEEEEETTTTEEEEEEEECSC-HHHHHHHHHHHHHHHHHHTTCTTSCSCBCCEEEEEEETTE
T ss_pred             ccCcEEEEEEcccCccEEEEEEEECCCCcEEEEEEECCc-cchHHHHHHHHHHHHHHhhccccCCcCEEEEEeecccCCe
Confidence            3467999999999999999999875 5889999998653 33446778888888876      57799999999999999


Q ss_pred             EEEEEecCCC-----------CCCCHHHHHHHHHHHH-------------hccCCCcEEEcCCCc--EEEEecCCceecC
Q 047066          175 PLLVNEFVKL-----------PTISWEVRIRIAAETA-------------EDIKSINILLDDNYT--TKVCDFGASKLVP  228 (256)
Q Consensus       175 ~~lv~e~~~~-----------~~l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~--~ki~DFGla~~~~  228 (256)
                      .+++|||+.+           ..+++.....++.|++             |||||+|||++.++.  +||+|||+|+...
T Consensus       174 ~~lv~e~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlKp~NILl~~~~~~~vkL~DFG~a~~~~  253 (429)
T 3kvw_A          174 ICMTFELLSMNLYELIKKNKFQGFSLPLVRKFAHSILQCLDALHKNRIIHCDLKPENILLKQQGRSGIKVIDFGSSCYEH  253 (429)
T ss_dssp             EEEEECCCCCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHHTEECSCCSGGGEEESSTTSCCEEECCCTTCEETT
T ss_pred             EEEEEeccCCCHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeEEccCCCcceEEeecccceecC
Confidence            9999999975           2366777777777766             699999999999887  9999999998754


Q ss_pred             CCCceeeeeeeecccc----cccccCCCCCCC
Q 047066          229 IDETQLSTMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       229 ~~~~~~~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      ...    ....||+.|    .+.+..++.++|
T Consensus       254 ~~~----~~~~gt~~y~aPE~~~~~~~~~~~D  281 (429)
T 3kvw_A          254 QRV----YTYIQSRFYRAPEVILGARYGMPID  281 (429)
T ss_dssp             CCC----CSSCSCGGGCCHHHHHTBCCCTHHH
T ss_pred             Ccc----cccCCCCCccChHHHhCCCCCchHH
Confidence            332    234699999    556667787766

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A

Probab=99.86  E-value=6.7e-21  Score=158.52  Aligned_cols=150  Identities=20%  Similarity=0.246  Sum_probs=117.5

Q ss_pred             CCCcccceeeeeCceEEEEEEEC-CCcEEEEEEeccc--ChhHHHHHHHHHHHHHhCCCCcccceeeEEEE----CCEEE
Q 047066          104 NNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIV--YQSQIEQCINKVVVLSQINHRNVVGLLGCCLE----TEVPL  176 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~----~~~~~  176 (256)
                      ..|.+.+.||+|+||.||+|... ++..||+|.+...  .....+.+.+|+.+++.++||||+++++++..    ....+
T Consensus        26 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~va~k~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~  105 (290)
T 1t4h_A           26 RFLKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIV  105 (290)
T ss_dssp             CEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEESSSCEEEE
T ss_pred             eeEEeeeeccCCCCeEEEEeEecCCceEEEEEEecchhhCHHHHHHHHHHHHHHHhCCCCCeeeeeeeeccccCCCceEE
Confidence            45788899999999999999975 6788999987643  34556789999999999999999999999875    35689


Q ss_pred             EEEecCCCCCC----------CHHHHHHHHHHHH---------------hccCCCcEEEc-CCCcEEEEecCCceecCCC
Q 047066          177 LVNEFVKLPTI----------SWEVRIRIAAETA---------------EDIKSINILLD-DNYTTKVCDFGASKLVPID  230 (256)
Q Consensus       177 lv~e~~~~~~l----------~~~~~~~~~~~i~---------------rdlk~~NiLi~-~~~~~ki~DFGla~~~~~~  230 (256)
                      +||||+++++|          ++.....++.+++               +||||+|||++ +++.+||+|||++......
T Consensus       106 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~i~H~dikp~Nil~~~~~~~~kl~Dfg~~~~~~~~  185 (290)
T 1t4h_A          106 LVTELMTSGTLKTYLKRFKVMKIKVLRSWCRQILKGLQFLHTRTPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKRAS  185 (290)
T ss_dssp             EEEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHTSSSCCCCSCCCGGGEEESSTTSCEEECCTTGGGGCCTT
T ss_pred             EEEEecCCCCHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHcCCCCEEECCCCHHHEEEECCCCCEEEeeCCCccccccc
Confidence            99999998665          4444445554444               69999999997 7899999999999765433


Q ss_pred             Cceeeeeeeecccc---cccccCCCCCCC
Q 047066          231 ETQLSTMVQGTLGY---YLHTSQGTLNKE  256 (256)
Q Consensus       231 ~~~~~~~~~Gt~~y---~~~~~~~t~ksD  256 (256)
                      .   .....||+.|   +...+.++.++|
T Consensus       186 ~---~~~~~~t~~y~aPE~~~~~~~~~~D  211 (290)
T 1t4h_A          186 F---AKAVIGTPEFMAPEMYEEKYDESVD  211 (290)
T ss_dssp             S---BEESCSSCCCCCGGGGGTCCCTHHH
T ss_pred             c---cccccCCcCcCCHHHHhccCCCcch
Confidence            2   2334689999   444566777665

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}

Probab=99.86  E-value=1.9e-21  Score=169.17  Aligned_cols=148  Identities=26%  Similarity=0.306  Sum_probs=114.3

Q ss_pred             cCCCcccceeeeeCceEEEEEEECCCcEEEEEEecccChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCE------EE
Q 047066          103 TNNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEV------PL  176 (256)
Q Consensus       103 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~------~~  176 (256)
                      ..+|++.+.||+|+||.||+|....+..+|+|++......    ..+|+.+++.++||||+++++++...+.      .+
T Consensus        39 ~~~Y~~~~~lG~G~~g~V~~a~~~~~~~~aikk~~~~~~~----~~~E~~il~~l~h~niv~l~~~~~~~~~~~~~~~~~  114 (394)
T 4e7w_A           39 EIAYTNCKVIGNGSFGVVFQAKLVESDEVAIKKVLQDKRF----KNRELQIMRIVKHPNVVDLKAFFYSNGDKKDEVFLN  114 (394)
T ss_dssp             EEEEEEEEEEEEETTEEEEEEEETTTEEEEEEEEECCTTS----CCHHHHHHHTCCCTTBCCEEEEEEEESSSSSCEEEE
T ss_pred             cceEEEeEEEeeCCCeEEEEEEECCCCeEEEEEEecCcch----HHHHHHHHHhCCCCCcceEEEEEEecCCCCCceEEE
Confidence            3579999999999999999999877777999987543221    2369999999999999999999975433      88


Q ss_pred             EEEecCCC-------------CCCCHHHHHHHHHHHH-------------hccCCCcEEEc-CCCcEEEEecCCceecCC
Q 047066          177 LVNEFVKL-------------PTISWEVRIRIAAETA-------------EDIKSINILLD-DNYTTKVCDFGASKLVPI  229 (256)
Q Consensus       177 lv~e~~~~-------------~~l~~~~~~~~~~~i~-------------rdlk~~NiLi~-~~~~~ki~DFGla~~~~~  229 (256)
                      +||||+.+             +.+++.....++.|++             |||||+|||++ .++.+||+|||+|+.+..
T Consensus       115 lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~Nill~~~~~~~kL~DFG~a~~~~~  194 (394)
T 4e7w_A          115 LVLEYVPETVYRASRHYAKLKQTMPMLLIKLYMYQLLRSLAYIHSIGICHRDIKPQNLLLDPPSGVLKLIDFGSAKILIA  194 (394)
T ss_dssp             EEEECCSEEHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEETTTTEEEECCCTTCEECCT
T ss_pred             EEeeccCccHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHCCccCCCCCHHHEEEcCCCCcEEEeeCCCcccccC
Confidence            99999975             3466666666666655             69999999999 799999999999998754


Q ss_pred             CCceeeeeeeecccc----ccc-ccCCCCCCC
Q 047066          230 DETQLSTMVQGTLGY----YLH-TSQGTLNKE  256 (256)
Q Consensus       230 ~~~~~~~~~~Gt~~y----~~~-~~~~t~ksD  256 (256)
                      ....  ....||+.|    .+. ...++.++|
T Consensus       195 ~~~~--~~~~~t~~y~aPE~~~~~~~~~~~~D  224 (394)
T 4e7w_A          195 GEPN--VSYICSRYYRAPELIFGATNYTTNID  224 (394)
T ss_dssp             TCCC--CSSCSCGGGCCHHHHTTCSSCCTHHH
T ss_pred             CCCC--cccccCcCccCHHHHcCCCCCCcHHH
Confidence            3322  234589999    232 335777765

>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C

Probab=99.86  E-value=4e-21  Score=167.43  Aligned_cols=146  Identities=18%  Similarity=0.160  Sum_probs=108.5

Q ss_pred             CCCccc-ceeeeeCceEEEEEEEC-CCcEEEEEEecccChhHHHHHHHHHHHHHh-CCCCcccceeeEEEE----CCEEE
Q 047066          104 NNYAYD-RMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVYQSQIEQCINKVVVLSQ-INHRNVVGLLGCCLE----TEVPL  176 (256)
Q Consensus       104 ~~~~~~-~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~-l~h~niv~l~~~~~~----~~~~~  176 (256)
                      ++|.+. +.||+|+||.||++..+ +++.||+|.+...     ..+.+|+.++.+ .+||||+++++++..    .+..+
T Consensus        61 ~~y~~~~~~LG~G~~g~V~~~~~~~~~~~vAiK~~~~~-----~~~~~E~~~~~~~~~hp~iv~l~~~~~~~~~~~~~~~  135 (400)
T 1nxk_A           61 DDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDC-----PKARREVELHWRASQCPHIVRIVDVYENLYAGRKCLL  135 (400)
T ss_dssp             GTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECS-----HHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEEE
T ss_pred             ccceeccceeeeccCeEEEEEEECCCCCEEEEEEeCcc-----hhHHHHHHHHHHhcCCCCcceEeEEEeecccCCcEEE
Confidence            456655 68999999999999975 6889999988632     346688888754 489999999999876    56789


Q ss_pred             EEEecCCCCC------------CCHHHHHHHHHHHH-------------hccCCCcEEEcC---CCcEEEEecCCceecC
Q 047066          177 LVNEFVKLPT------------ISWEVRIRIAAETA-------------EDIKSINILLDD---NYTTKVCDFGASKLVP  228 (256)
Q Consensus       177 lv~e~~~~~~------------l~~~~~~~~~~~i~-------------rdlk~~NiLi~~---~~~~ki~DFGla~~~~  228 (256)
                      +||||+++|+            +++.....++.|++             |||||+|||++.   ++.+||+|||+++...
T Consensus       136 lv~E~~~gg~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDlkp~Nill~~~~~~~~~kl~DFG~a~~~~  215 (400)
T 1nxk_A          136 IVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHSINIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETT  215 (400)
T ss_dssp             EEEECCCSEEHHHHHHCC---CCBHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESSSSTTCCEEECCCTTCEECC
T ss_pred             EEEEeCCCCcHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHCCccccCcCcceEEEecCCCCccEEEEecccccccC
Confidence            9999998754            45666666666655             699999999987   7899999999999764


Q ss_pred             CCCceeeeeeeecccc----cccccCCCCCCC
Q 047066          229 IDETQLSTMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       229 ~~~~~~~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      ...  .....+||+.|    .+.++.++.++|
T Consensus       216 ~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~D  245 (400)
T 1nxk_A          216 SHN--SLTTPCYTPYYVAPEVLGPEKYDKSCD  245 (400)
T ss_dssp             -------------CTTCCGGGSCCCCSSSHHH
T ss_pred             CCC--ccccCCCCCCccCHhhcCCCCCCCccc
Confidence            322  23455799999    555677777765

>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens}

Probab=99.86  E-value=1.6e-21  Score=163.97  Aligned_cols=154  Identities=19%  Similarity=0.289  Sum_probs=113.0

Q ss_pred             cCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccChhHHHHHHHHHHHHHhCCCCcccceeeEEE-----------
Q 047066          103 TNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCL-----------  170 (256)
Q Consensus       103 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~-----------  170 (256)
                      .++|++.+.||+|+||.||+|... +++.||+|.+........+.+.+|+.+++.++||||+++++++.           
T Consensus        10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~   89 (320)
T 2i6l_A           10 GSRYMDLKPLGCGGNGLVFSAVDNDCDKRVAIKKIVLTDPQSVKHALREIKIIRRLDHDNIVKVFEILGPSGSQLTDDVG   89 (320)
T ss_dssp             TTTEEEEEECC-----CEEEEEETTTTEEEEEEEEECCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEECTTSCBCCC---
T ss_pred             CCceeEEEEeccCCCeEEEEEEECCCCeEEEEEEEecCChHHHHHHHHHHHHHHhcCCCCeeEEEEeccccccccccccc
Confidence            368999999999999999999976 58999999987766667788999999999999999999999873           


Q ss_pred             ---ECCEEEEEEecCCC--------CCCCHHHHHHHHHHHH-------------hccCCCcEEEc-CCCcEEEEecCCce
Q 047066          171 ---ETEVPLLVNEFVKL--------PTISWEVRIRIAAETA-------------EDIKSINILLD-DNYTTKVCDFGASK  225 (256)
Q Consensus       171 ---~~~~~~lv~e~~~~--------~~l~~~~~~~~~~~i~-------------rdlk~~NiLi~-~~~~~ki~DFGla~  225 (256)
                         ..+..+++|||+++        +.++......++.|++             +||||+|||++ +++.+||+|||+++
T Consensus        90 ~~~~~~~~~lv~e~~~~~L~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~~kl~Dfg~~~  169 (320)
T 2i6l_A           90 SLTELNSVYIVQEYMETDLANVLEQGPLLEEHARLFMYQLLRGLKYIHSANVLHRDLKPANLFINTEDLVLKIGDFGLAR  169 (320)
T ss_dssp             -CCSCSEEEEEEECCSEEHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCSGGGEEEETTTTEEEECCCTTCB
T ss_pred             cccccCceeEEeeccCCCHHHHhhcCCccHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHEEEcCCCCeEEEccCcccc
Confidence               34678999999974        4466666677777665             59999999997 56799999999998


Q ss_pred             ecCCCCce--eeeeeeecccc----cc-cccCCCCCCC
Q 047066          226 LVPIDETQ--LSTMVQGTLGY----YL-HTSQGTLNKE  256 (256)
Q Consensus       226 ~~~~~~~~--~~~~~~Gt~~y----~~-~~~~~t~ksD  256 (256)
                      ........  ......||+.|    .+ ....++.++|
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~D  207 (320)
T 2i6l_A          170 IMDPHYSHKGHLSEGLVTKWYRSPRLLLSPNNYTKAID  207 (320)
T ss_dssp             CC--------CCCGGGSCCTTCCHHHHHCTTCCCHHHH
T ss_pred             ccCCCcccccccccccccccccCcHHhcCcccCCchhh
Confidence            76432211  11223467777    22 2355666554

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*

Probab=99.86  E-value=8.2e-21  Score=158.42  Aligned_cols=140  Identities=28%  Similarity=0.317  Sum_probs=114.9

Q ss_pred             cCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC---------hhHHHHHHHHHHHHHhCC-CCcccceeeEEEE
Q 047066          103 TNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY---------QSQIEQCINKVVVLSQIN-HRNVVGLLGCCLE  171 (256)
Q Consensus       103 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---------~~~~~~~~~E~~~l~~l~-h~niv~l~~~~~~  171 (256)
                      .++|++.+.||+|+||.||+|..+ +++.||+|.+....         ....+.+.+|+.+++++. ||||+++++++..
T Consensus        16 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~   95 (298)
T 1phk_A           16 YENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTYET   95 (298)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEEC
T ss_pred             hhccceeeeecCCCceEEEEEEEcCcCceEEEEEEecccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeeeeeeecc
Confidence            468999999999999999999975 68899999886432         123467889999999995 9999999999999


Q ss_pred             CCEEEEEEecCCCCCC----------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecC
Q 047066          172 TEVPLLVNEFVKLPTI----------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVP  228 (256)
Q Consensus       172 ~~~~~lv~e~~~~~~l----------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~  228 (256)
                      .+..+++|||+++++|          +......++.+++             +||+|+||+++.++.+||+|||++....
T Consensus        96 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~  175 (298)
T 1phk_A           96 NTFFFLVFDLMKKGELFDYLTEKVTLSEKETRKIMRALLEVICALHKLNIVHRDLKPENILLDDDMNIKLTDFGFSCQLD  175 (298)
T ss_dssp             SSEEEEEEECCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECCCTTCEECC
T ss_pred             CCeEEEEEeccCCCcHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCcceEEEcCCCcEEEecccchhhcC
Confidence            9999999999998654          5555566666655             5999999999999999999999998875


Q ss_pred             CCCceeeeeeeecccc
Q 047066          229 IDETQLSTMVQGTLGY  244 (256)
Q Consensus       229 ~~~~~~~~~~~Gt~~y  244 (256)
                      ....  .....||+.|
T Consensus       176 ~~~~--~~~~~~~~~y  189 (298)
T 1phk_A          176 PGEK--LREVCGTPSY  189 (298)
T ss_dssp             TTCC--BCCCCSCGGG
T ss_pred             CCcc--cccccCCccc
Confidence            4332  2334588888

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}

Probab=99.85  E-value=8.3e-22  Score=171.46  Aligned_cols=140  Identities=25%  Similarity=0.353  Sum_probs=114.5

Q ss_pred             cCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC-hhHHHHHHHHHHHHHhCCCCcccceeeEEEECC--EEEEE
Q 047066          103 TNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY-QSQIEQCINKVVVLSQINHRNVVGLLGCCLETE--VPLLV  178 (256)
Q Consensus       103 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~--~~~lv  178 (256)
                      .++|.+.+.||+|+||.||+|... +++.||+|.+.... ....+.+.+|+.+++.++||||+++++++...+  ..++|
T Consensus         8 ~~~y~i~~~LG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~lv   87 (396)
T 4eut_A            8 NHLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHKVLI   87 (396)
T ss_dssp             SEEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHHHHCCCTTBCCEEEEEECTTTCCEEEE
T ss_pred             CCceEEEEEEEcCCCeEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHHHhcCCCCCCeEEEeeccCCCCeeEEE
Confidence            467999999999999999999976 58999999986533 334567889999999999999999999998754  78999


Q ss_pred             EecCCCCC-------------CCHHHHHHHHHHHH-------------hccCCCcEEE----cCCCcEEEEecCCceecC
Q 047066          179 NEFVKLPT-------------ISWEVRIRIAAETA-------------EDIKSINILL----DDNYTTKVCDFGASKLVP  228 (256)
Q Consensus       179 ~e~~~~~~-------------l~~~~~~~~~~~i~-------------rdlk~~NiLi----~~~~~~ki~DFGla~~~~  228 (256)
                      |||+++++             +++.....++.+++             +||||+|||+    +.++.+||+|||+|+...
T Consensus        88 ~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~~~~~kL~DFG~a~~~~  167 (396)
T 4eut_A           88 MEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLRENGIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAARELE  167 (396)
T ss_dssp             ECCCTTEEHHHHTTSGGGTTCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEEEECTTSCEEEEECCGGGCEECC
T ss_pred             EecCCCCCHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHHHCCEEECCcCHHHEEEeecCCCceeEEEecCCCceEcc
Confidence            99998743             56677777777766             6999999999    778889999999999875


Q ss_pred             CCCceeeeeeeecccc
Q 047066          229 IDETQLSTMVQGTLGY  244 (256)
Q Consensus       229 ~~~~~~~~~~~Gt~~y  244 (256)
                      ....  .....||+.|
T Consensus       168 ~~~~--~~~~~gt~~y  181 (396)
T 4eut_A          168 DDEQ--FVSLYGTEEY  181 (396)
T ss_dssp             CGGG--SSCSSSCCTT
T ss_pred             CCCc--cccccCCccc
Confidence            4322  2234589888

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A*

Probab=99.85  E-value=2.2e-21  Score=161.55  Aligned_cols=159  Identities=22%  Similarity=0.324  Sum_probs=118.1

Q ss_pred             HHHHhhcCCCcccc-eeeeeCceEEEEEEEC---CCcEEEEEEecccC--hhHHHHHHHHHHHHHhCCCCcccceeeEEE
Q 047066           97 GELKIATNNYAYDR-MIGRGGYGTVFLGSLS---DNKAIAIKKSRIVY--QSQIEQCINKVVVLSQINHRNVVGLLGCCL  170 (256)
Q Consensus        97 ~~~~~~~~~~~~~~-~lg~G~~g~V~~~~~~---~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~  170 (256)
                      .++.+..++|.+.+ .||+|+||.||+|.+.   ++..||+|.+....  ....+.+.+|+.+++.++||||+++++++ 
T Consensus         9 ~~~~~~~~~y~~~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~-   87 (291)
T 1xbb_A            9 KEVYLDRKLLTLEDKELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGIC-   87 (291)
T ss_dssp             --CBCCGGGEEEEEEEEEECSSEEEEEEEEECSSSEEEEEEEEEC-----CHHHHHHHHHHHHHHTCCCTTBCCEEEEE-
T ss_pred             ceeeecchhhhhccCccccccCeeeEeeeecCCCceeeEEEEeecccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEEE-
Confidence            34455667888888 9999999999999642   46789999886543  33457899999999999999999999999 


Q ss_pred             ECCEEEEEEecCCCCC----------CCHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceec
Q 047066          171 ETEVPLLVNEFVKLPT----------ISWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLV  227 (256)
Q Consensus       171 ~~~~~~lv~e~~~~~~----------l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~  227 (256)
                      ..+..+++|||+++++          +++.....++.+++             +||||+||+++.++.+||+|||+++..
T Consensus        88 ~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~~l~~LH~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~  167 (291)
T 1xbb_A           88 EAESWMLVMEMAELGPLNKYLQQNRHVKDKNIIELVHQVSMGMKYLEESNFVHRDLAARNVLLVTQHYAKISDFGLSKAL  167 (291)
T ss_dssp             ESSSEEEEEECCTTEEHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEEETTEEEECCCTTCEEC
T ss_pred             CCCCcEEEEEeCCCCCHHHHHHhCcCCCHHHHHHHHHHHHHHHHHHHhCCeEcCCCCcceEEEeCCCcEEEccCCcceee
Confidence            5667899999998754          45666667777666             599999999999999999999999987


Q ss_pred             CCCCceee--eeeeecccc----cccccCCCCCCC
Q 047066          228 PIDETQLS--TMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       228 ~~~~~~~~--~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      ........  ....||+.|    .+.+..++.++|
T Consensus       168 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~D  202 (291)
T 1xbb_A          168 RADENYYKAQTHGKWPVKWYAPECINYYKFSSKSD  202 (291)
T ss_dssp             CTTCSEEEC----CCCGGGCCHHHHHHCEEEHHHH
T ss_pred             ccCCCcccccccCCCCceeeChHHhccCCCChhhh
Confidence            65443322  223466777    333444444443

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7

Probab=99.85  E-value=6.6e-21  Score=161.60  Aligned_cols=144  Identities=19%  Similarity=0.330  Sum_probs=108.6

Q ss_pred             HHHHhhcCCCcccceeeeeCceEEEEEEECCCcEEEEEEecccChhHHHHHHHHHHHHHhC--CCCcccceeeEEEEC--
Q 047066           97 GELKIATNNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQI--NHRNVVGLLGCCLET--  172 (256)
Q Consensus        97 ~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l--~h~niv~l~~~~~~~--  172 (256)
                      .......++|++.+.||+|+||.||+|... ++.||+|.+....   ......|.+++..+  +||||+++++++...  
T Consensus        30 ~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~~---~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~  105 (337)
T 3mdy_A           30 LVQRTIAKQIQMVKQIGKGRYGEVWMGKWR-GEKVAVKVFFTTE---EASWFRETEIYQTVLMRHENILGFIAADIKGTG  105 (337)
T ss_dssp             HHHTTHHHHCEEEEEEEEETTEEEEEEEET-TEEEEEEEEEGGG---HHHHHHHHHHHTSTTCCCTTBCCEEEEEEESCG
T ss_pred             ccccccccceEEEeEeecCCCeEEEEEEEC-CceEEEEEEeccc---cchhhhHHHHHHHHhhcCCCeeeEEEEEccCCC
Confidence            334445578999999999999999999984 8999999885432   24455666666554  899999999999987  


Q ss_pred             --CEEEEEEecCCCCCC---------CHHHHHHHHHH---------------------HHhccCCCcEEEcCCCcEEEEe
Q 047066          173 --EVPLLVNEFVKLPTI---------SWEVRIRIAAE---------------------TAEDIKSINILLDDNYTTKVCD  220 (256)
Q Consensus       173 --~~~~lv~e~~~~~~l---------~~~~~~~~~~~---------------------i~rdlk~~NiLi~~~~~~ki~D  220 (256)
                        +..+++|||+++++|         ++.....++.+                     +|+||||+|||++.++.+||+|
T Consensus       106 ~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dikp~Nill~~~~~~kl~D  185 (337)
T 3mdy_A          106 SWTQLYLITDYHENGSLYDYLKSTTLDAKSMLKLAYSSVSGLCHLHTEIFSTQGKPAIAHRDLKSKNILVKKNGTCCIAD  185 (337)
T ss_dssp             GGCEEEEEECCCTTCBHHHHHHHCCBCHHHHHHHHHHHHHHHHHHHSCBCSTTCBCCEECSCCCGGGEEECTTSCEEECC
T ss_pred             CCCceEEEEeccCCCcHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCCEEecccchHHEEECCCCCEEEEe
Confidence              789999999999776         34444444443                     3479999999999999999999


Q ss_pred             cCCceecCCCCceee---eeeeecccc
Q 047066          221 FGASKLVPIDETQLS---TMVQGTLGY  244 (256)
Q Consensus       221 FGla~~~~~~~~~~~---~~~~Gt~~y  244 (256)
                      ||+|+.+........   ....||+.|
T Consensus       186 fg~a~~~~~~~~~~~~~~~~~~gt~~y  212 (337)
T 3mdy_A          186 LGLAVKFISDTNEVDIPPNTRVGTKRY  212 (337)
T ss_dssp             CTTCEECC---------CCSSCSCGGG
T ss_pred             CCCceeeccccccccCCCCCCccCcce
Confidence            999987654332211   234699999

>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A

Probab=99.85  E-value=8.8e-22  Score=169.32  Aligned_cols=155  Identities=15%  Similarity=0.245  Sum_probs=116.0

Q ss_pred             hhcCCCcccceeeeeCceEEEEEEECC------CcEEEEEEecccChhHH-----------HHHHHHHHHHHhCCCCccc
Q 047066          101 IATNNYAYDRMIGRGGYGTVFLGSLSD------NKAIAIKKSRIVYQSQI-----------EQCINKVVVLSQINHRNVV  163 (256)
Q Consensus       101 ~~~~~~~~~~~lg~G~~g~V~~~~~~~------~~~vavK~~~~~~~~~~-----------~~~~~E~~~l~~l~h~niv  163 (256)
                      ...++|++.+.||+|+||.||+|.++.      ++.||+|.+........           .....|+..+..++||||+
T Consensus        32 ~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~~iv  111 (364)
T 3op5_A           32 MAAAAWKVGLPIGQGGFGCIYLADMNSSESVGSDAPCVVKVEPSDNGPLFTELKFYQRAAKPEQIQKWIRTRKLKYLGVP  111 (364)
T ss_dssp             TTCCEEEEEEECCCC-CCEEEEEEECCSSCCCTTCSEEEEEEETTCHHHHHHHHHHHHHCCHHHHHHHHHHTTCSCCCSC
T ss_pred             cCCCeEEEEEEEecCCCeEEEEeeecCccccccccceEEEEeeccchhHHHHHHHHHhhhhhHHHHHHHHHhhccCCCCC
Confidence            345689999999999999999998754      47899998765432111           1234566677788999999


Q ss_pred             ceeeEEEEC----CEEEEEEecCCC-----------CCCCHHHHHHHHHHHH-------------hccCCCcEEEc--CC
Q 047066          164 GLLGCCLET----EVPLLVNEFVKL-----------PTISWEVRIRIAAETA-------------EDIKSINILLD--DN  213 (256)
Q Consensus       164 ~l~~~~~~~----~~~~lv~e~~~~-----------~~l~~~~~~~~~~~i~-------------rdlk~~NiLi~--~~  213 (256)
                      ++++++...    ...++||||+ +           +.+++...+.++.|++             |||||+|||++  .+
T Consensus       112 ~~~~~~~~~~~~~~~~~lv~e~~-g~~L~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~iiHrDlkp~Nill~~~~~  190 (364)
T 3op5_A          112 KYWGSGLHDKNGKSYRFMIMDRF-GSDLQKIYEANAKRFSRKTVLQLSLRILDILEYIHEHEYVHGDIKASNLLLNYKNP  190 (364)
T ss_dssp             CEEEEEEEEETTEEEEEEEEECE-EEEHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEEESSCT
T ss_pred             eEEeeeeeccCCcceEEEEEeCC-CCCHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCeEEecCCHHHEEEecCCC
Confidence            999999864    4589999999 5           4467777777887776             69999999999  88


Q ss_pred             CcEEEEecCCceecCCCCce------eeeeeeecccc----cccccCCCCCCC
Q 047066          214 YTTKVCDFGASKLVPIDETQ------LSTMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       214 ~~~ki~DFGla~~~~~~~~~------~~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      +.+||+|||+|+.+......      ......||+.|    .+.+..++.++|
T Consensus       191 ~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~D  243 (364)
T 3op5_A          191 DQVYLVDYGLAYRYCPEGVHKAYAADPKRCHDGTIEFTSIDAHNGVAPSRRGD  243 (364)
T ss_dssp             TCEEECCCTTCEESSGGGCCCCSSCCSSCCCCCCTTTCCHHHHTTCCCCHHHH
T ss_pred             CeEEEEECCcceecccCCcccccccCcccccCCCCCccCHHHhCCCCCCchhh
Confidence            99999999999876533211      11334599999    555666777665

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A*

Probab=99.85  E-value=4e-21  Score=158.59  Aligned_cols=141  Identities=21%  Similarity=0.300  Sum_probs=108.7

Q ss_pred             hcCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC---hhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEE
Q 047066          102 ATNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY---QSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLL  177 (256)
Q Consensus       102 ~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~l  177 (256)
                      ..++|.+.+.||+|+||.||+|... +++.||+|.+....   ....+.+.+|+.+++.++||||+++++++...+..++
T Consensus         9 ~~~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l   88 (276)
T 2h6d_A            9 KIGHYVLGDTLGVGTFGKVKIGEHQLTGHKVAVKILNRQKIRSLDVVGKIKREIQNLKLFRHPHIIKLYQVISTPTDFFM   88 (276)
T ss_dssp             EETTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEE
T ss_pred             eeccEEEEeeecCCCCeEEEEEEECCCCceEEEEEeccccccchhHHHHHHHHHHHHhcCCCCCEeEEEEEEecCCeEEE
Confidence            3468999999999999999999976 68999999886432   2334678999999999999999999999999999999


Q ss_pred             EEecCCCCCC----------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCcee
Q 047066          178 VNEFVKLPTI----------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQL  234 (256)
Q Consensus       178 v~e~~~~~~l----------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~  234 (256)
                      +|||+++++|          ++.....++.+++             +||+|+||+++.++.+||+|||++........  
T Consensus        89 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~~l~dfg~~~~~~~~~~--  166 (276)
T 2h6d_A           89 VMEYVSGGELFDYICKHGRVEEMEARRLFQQILSAVDYCHRHMVVHRDLKPENVLLDAHMNAKIADFGLSNMMSDGEF--  166 (276)
T ss_dssp             EEECCCSCBHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHHCSSCCCCCGGGEEECTTSCEEECCCCGGGCCCC-----
T ss_pred             EEeccCCCcHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCCccCCCChhhEEECCCCCEEEeecccccccCCCcc--
Confidence            9999988664          5555566666655             59999999999999999999999987654322  


Q ss_pred             eeeeeecccc
Q 047066          235 STMVQGTLGY  244 (256)
Q Consensus       235 ~~~~~Gt~~y  244 (256)
                      .....||+.|
T Consensus       167 ~~~~~~~~~y  176 (276)
T 2h6d_A          167 LRTSCGSPNY  176 (276)
T ss_dssp             ----------
T ss_pred             eecccCCccc
Confidence            2334588888

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B*

Probab=99.85  E-value=2.2e-21  Score=160.57  Aligned_cols=148  Identities=26%  Similarity=0.403  Sum_probs=118.1

Q ss_pred             cCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccChhHHHHHHHHHHHHHhCCCCcccceeeEEEE----------
Q 047066          103 TNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLE----------  171 (256)
Q Consensus       103 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~----------  171 (256)
                      ..+|++.+.||+|+||.||+|... +++.||+|.+....    +.+.+|+.+++.++||||+++++++..          
T Consensus        10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~   85 (284)
T 2a19_B           10 GMDFKEIELIGSGGFGQVFKAKHRIDGKTYVIKRVKYNN----EKAEREVKALAKLDHVNIVHYNGCWDGFDYDPETSSK   85 (284)
T ss_dssp             HHHEEEEEEEECSSSCCEEEEEETTTCCEEEEEEEECCS----GGGHHHHHHHHHCCCTTBCCEEEEEEEEEEC------
T ss_pred             ccccceeeeeccCCceEEEEEEEcCCCeEEEEEEecccc----HHHHHHHHHHHhCCCCCEEEEeeeEeccccCcccccc
Confidence            357899999999999999999986 78999999886543    345689999999999999999998864          


Q ss_pred             ------CCEEEEEEecCCCCCC------------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEe
Q 047066          172 ------TEVPLLVNEFVKLPTI------------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCD  220 (256)
Q Consensus       172 ------~~~~~lv~e~~~~~~l------------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~D  220 (256)
                            ....+++|||+++++|            ++.....++.+++             +||||+|||+++++.+||+|
T Consensus        86 ~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~kl~D  165 (284)
T 2a19_B           86 NSSRSKTKCLFIQMEFCDKGTLEQWIEKRRGEKLDKVLALELFEQITKGVDYIHSKKLINRDLKPSNIFLVDTKQVKIGD  165 (284)
T ss_dssp             ---CCEEEEEEEEECCCCSCBHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEEETTEEEECC
T ss_pred             cccccCcceEEEEEeccCCCCHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHhCCeeeccCCHHHEEEcCCCCEEECc
Confidence                  4458999999998654            5555566666665             59999999999999999999


Q ss_pred             cCCceecCCCCceeeeeeeecccc----cccccCCCCCCC
Q 047066          221 FGASKLVPIDETQLSTMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       221 FGla~~~~~~~~~~~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      ||+++.......  .....||+.|    .+.+..++.++|
T Consensus       166 fg~~~~~~~~~~--~~~~~~~~~y~aPE~~~~~~~~~~~D  203 (284)
T 2a19_B          166 FGLVTSLKNDGK--RTRSKGTLRYMSPEQISSQDYGKEVD  203 (284)
T ss_dssp             CTTCEESSCCSC--CCCCCSCCTTSCHHHHHCSCCCTHHH
T ss_pred             chhheecccccc--ccccCCcccccChhhhccCCCcchhh
Confidence            999988754432  2334589999    455566677665

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A

Probab=99.85  E-value=6.4e-22  Score=168.99  Aligned_cols=137  Identities=21%  Similarity=0.258  Sum_probs=108.9

Q ss_pred             cCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccChhHHHHHHHHHHHHHhC-CCCcccceeeEEEECCEEEEEEe
Q 047066          103 TNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVYQSQIEQCINKVVVLSQI-NHRNVVGLLGCCLETEVPLLVNE  180 (256)
Q Consensus       103 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~lv~e  180 (256)
                      .++|++.+.||+|+||.||+|..+ +++.||+|.+.....    ...+|++++.++ +||||+++++++.+.+..++|||
T Consensus        21 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~----~~~~E~~~l~~~~~hp~iv~~~~~~~~~~~~~lv~E   96 (342)
T 2qr7_A           21 TDGYEVKEDIGVGSYSVCKRCIHKATNMEFAVKIIDKSKR----DPTEEIEILLRYGQHPNIITLKDVYDDGKYVYVVTE   96 (342)
T ss_dssp             HHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTTC----CCHHHHHHHHHHTTSTTBCCEEEEEECSSEEEEEEC
T ss_pred             cccEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEcccC----ChHHHHHHHHHhcCCCCcCeEEEEEEcCCEEEEEEe
Confidence            357999999999999999999976 688999999865432    234688888888 79999999999999999999999


Q ss_pred             cCCCCCC----------CHHHHHHHHHHHH-------------hccCCCcEEEcCC----CcEEEEecCCceecCCCCce
Q 047066          181 FVKLPTI----------SWEVRIRIAAETA-------------EDIKSINILLDDN----YTTKVCDFGASKLVPIDETQ  233 (256)
Q Consensus       181 ~~~~~~l----------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~----~~~ki~DFGla~~~~~~~~~  233 (256)
                      |+++++|          ++.....++.+++             |||||+|||+.++    +.+||+|||+++........
T Consensus        97 ~~~gg~L~~~i~~~~~~~~~~~~~~~~qi~~al~~lH~~givHrDlkp~NIl~~~~~~~~~~~kl~Dfg~a~~~~~~~~~  176 (342)
T 2qr7_A           97 LMKGGELLDKILRQKFFSEREASAVLFTITKTVEYLHAQGVVHRDLKPSNILYVDESGNPESIRICDFGFAKQLRAENGL  176 (342)
T ss_dssp             CCCSCBHHHHHHTCTTCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEESSSSCSGGGEEECCCTTCEECBCTTCC
T ss_pred             CCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCcEeccCCHHHEEEecCCCCcCeEEEEECCCcccCcCCCCc
Confidence            9988664          5555566666655             6999999998433    35999999999987544322


Q ss_pred             eeeeeeecccc
Q 047066          234 LSTMVQGTLGY  244 (256)
Q Consensus       234 ~~~~~~Gt~~y  244 (256)
                       ....+||+.|
T Consensus       177 -~~~~~gt~~y  186 (342)
T 2qr7_A          177 -LMTPCYTANF  186 (342)
T ss_dssp             -BCCSSCCSSC
T ss_pred             -eeccCCCccc
Confidence             2334689988

>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}

Probab=99.85  E-value=2.3e-21  Score=169.11  Aligned_cols=150  Identities=21%  Similarity=0.281  Sum_probs=103.7

Q ss_pred             CCcc-cceeeeeCceEEEEEEEC---CCcEEEEEEecccChhHHHHHHHHHHHHHhCCCCcccceeeEEEE--CCEEEEE
Q 047066          105 NYAY-DRMIGRGGYGTVFLGSLS---DNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLE--TEVPLLV  178 (256)
Q Consensus       105 ~~~~-~~~lg~G~~g~V~~~~~~---~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~--~~~~~lv  178 (256)
                      .|.+ .++||+|+||.||+|..+   ++..||+|.+.....  ...+.+|+.+++.++||||+++++++..  ....++|
T Consensus        21 ~y~~~g~~lG~G~~g~Vy~~~~~~~~~~~~vaiK~~~~~~~--~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~lv   98 (405)
T 3rgf_A           21 LFEYEGCKVGRGTYGHVYKAKRKDGKDDKDYALKQIEGTGI--SMSACREIALLRELKHPNVISLQKVFLSHADRKVWLL   98 (405)
T ss_dssp             HEECSSCCCC-----EEEEEEESSSSCCCCEEEEECSSSSC--CHHHHHHHHHHHHCCCTTBCCCCEEEEETTTTEEEEE
T ss_pred             hhhhcCcEeeecCCeEEEEEEEccCCCCeEEEEEEECCCCC--CHHHHHHHHHHHhcCCCCeeeEeeEEecCCCCeEEEE
Confidence            3554 458999999999999965   478899999865432  2467899999999999999999999975  6789999


Q ss_pred             EecCCCC------------------CCCHHHHHHHHHHHH-------------hccCCCcEEE----cCCCcEEEEecCC
Q 047066          179 NEFVKLP------------------TISWEVRIRIAAETA-------------EDIKSINILL----DDNYTTKVCDFGA  223 (256)
Q Consensus       179 ~e~~~~~------------------~l~~~~~~~~~~~i~-------------rdlk~~NiLi----~~~~~~ki~DFGl  223 (256)
                      |||+.++                  .+++.....++.|++             |||||+|||+    +.++.+||+|||+
T Consensus        99 ~e~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~~~ivH~Dlkp~NIll~~~~~~~~~~kl~Dfg~  178 (405)
T 3rgf_A           99 FDYAEHDLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLHANWVLHRDLKPANILVMGEGPERGRVKIADMGF  178 (405)
T ss_dssp             EECCSEEHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECCSSTTTTCEEECCTTC
T ss_pred             EeCCCCCHHHHHHHhccccccccccCCCHHHHHHHHHHHHHHHHHHHhCCEeCCCcCHHHeEEecCCCCCCcEEEEECCC
Confidence            9999763                  266666666666665             6999999999    7788999999999


Q ss_pred             ceecCCCCc--eeeeeeeecccc----cccc-cCCCCCCC
Q 047066          224 SKLVPIDET--QLSTMVQGTLGY----YLHT-SQGTLNKE  256 (256)
Q Consensus       224 a~~~~~~~~--~~~~~~~Gt~~y----~~~~-~~~t~ksD  256 (256)
                      |+.+.....  ......+||+.|    .+.+ ..++.++|
T Consensus       179 a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~D  218 (405)
T 3rgf_A          179 ARLFNSPLKPLADLDPVVVTFWYRAPELLLGARHYTKAID  218 (405)
T ss_dssp             CC----------------CCCTTCCHHHHTTCCSCCHHHH
T ss_pred             ceecCCCCcccccCCCceecCcccCchhhcCCCcccchhh
Confidence            987754322  122345799999    3333 44676665

>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens}

Probab=99.85  E-value=4.6e-21  Score=164.03  Aligned_cols=149  Identities=21%  Similarity=0.283  Sum_probs=116.8

Q ss_pred             CCCcccceeeeeCceEEEEEEEC-CCcEEEEEEeccc--ChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCE------
Q 047066          104 NNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIV--YQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEV------  174 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~------  174 (256)
                      ++|.+.+.||+|+||.||+|..+ +++.||+|.+...  .....+.+.+|+.+++.++||||+++++++...+.      
T Consensus        24 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~  103 (353)
T 3coi_A           24 KTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNFYD  103 (353)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEESSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGCCC
T ss_pred             ceEEEeeeEecCCCeEEEEEEECCCCCEEEEEEecccccchHHHHHHHHHHHHHHhcCCCCcccHhheEeccccccccee
Confidence            67999999999999999999975 6899999998653  23445778999999999999999999999987553      


Q ss_pred             EEEEEecCCC-------CCCCHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCcee
Q 047066          175 PLLVNEFVKL-------PTISWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQL  234 (256)
Q Consensus       175 ~~lv~e~~~~-------~~l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~  234 (256)
                      .+++|||+.+       ..+++.....++.|++             +||||+|||++.++.+||+|||+++.....    
T Consensus       104 ~~lv~e~~~~~l~~~~~~~~~~~~~~~i~~qi~~al~~LH~~~ivH~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~----  179 (353)
T 3coi_A          104 FYLVMPFMQTDLQKIMGLKFSEEKIQYLVYQMLKGLKYIHSAGVVHRDLKPGNLAVNEDCELKILDFGLARHADAE----  179 (353)
T ss_dssp             CEEEEECCSEEGGGTTTSCCCHHHHHHHHHHHHHHHHHHHHTTCCCSSCCGGGEEECTTCCEEECSTTCTTC--------
T ss_pred             EEEEeccccCCHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEeECCCCcEEEeecccccCCCCC----
Confidence            4999999975       3467777777777766             599999999999999999999999875432    


Q ss_pred             eeeeeecccc----cccc-cCCCCCCC
Q 047066          235 STMVQGTLGY----YLHT-SQGTLNKE  256 (256)
Q Consensus       235 ~~~~~Gt~~y----~~~~-~~~t~ksD  256 (256)
                      .....||+.|    .+.+ ..++.++|
T Consensus       180 ~~~~~~t~~y~aPE~~~~~~~~~~~~D  206 (353)
T 3coi_A          180 MTGYVVTRWYRAPEVILSWMHYNQTVD  206 (353)
T ss_dssp             ----CCSBCCSCHHHHSCCSCCCTTHH
T ss_pred             ccccccCcCcCCHHHHhCcCCCCchhh
Confidence            2334689998    3333 56777766

>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major}

Probab=99.85  E-value=2.9e-21  Score=165.42  Aligned_cols=157  Identities=23%  Similarity=0.271  Sum_probs=107.7

Q ss_pred             HHHHhhcCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCE-
Q 047066           97 GELKIATNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEV-  174 (256)
Q Consensus        97 ~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~-  174 (256)
                      .......++|++.+.||+|+||.||+|... ++..||+|.+.... .......+|+..+..++||||+++++++...+. 
T Consensus        16 ~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~-~~~~~~~~~~~~l~~l~h~niv~~~~~~~~~~~~   94 (360)
T 3e3p_A           16 ERSRKEMDRFQVERMAGQGTFGTVQLGKEKSTGMSVAIKKVIQDP-RFRNRELQIMQDLAVLHHPNIVQLQSYFYTLGER   94 (360)
T ss_dssp             HHHHHHHTTEEEC----------CEEEEETTTCCEEEEEEEECCT-TCCCHHHHHHHHHHHHCCTTBCCEEEEEEEECSS
T ss_pred             hhchhhccceEEEEEEecCCCeEEEEEEECCCCCEEEEEEEecCc-cccHHHHHHHHHHHhcCCCCcccHHHhhhccccc
Confidence            345556689999999999999999999975 68899999875432 222456778888899999999999999976443 


Q ss_pred             ------EEEEEecCCCC-------------CCCHHHHHHHHHHHH---------------hccCCCcEEEcC-CCcEEEE
Q 047066          175 ------PLLVNEFVKLP-------------TISWEVRIRIAAETA---------------EDIKSINILLDD-NYTTKVC  219 (256)
Q Consensus       175 ------~~lv~e~~~~~-------------~l~~~~~~~~~~~i~---------------rdlk~~NiLi~~-~~~~ki~  219 (256)
                            .+++|||+.++             .++......++.+++               +||||+|||++. ++.+||+
T Consensus        95 ~~~~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~~~ivH~Dlkp~NIll~~~~~~~kl~  174 (360)
T 3e3p_A           95 DRRDIYLNVVMEYVPDTLHRCCRNYYRRQVAPPPILIKVFLFQLIRSIGCLHLPSVNVCHRDIKPHNVLVNEADGTLKLC  174 (360)
T ss_dssp             CTTCEEEEEEEECCSCBHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHTSTTTCCBCSCCCGGGEEEETTTTEEEEC
T ss_pred             cccceeEEEEeecccccHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHhCCCCCeecCcCCHHHEEEeCCCCcEEEe
Confidence                  88999999874             234444444444433               699999999997 8999999


Q ss_pred             ecCCceecCCCCceeeeeeeecccc----ccc-ccCCCCCCC
Q 047066          220 DFGASKLVPIDETQLSTMVQGTLGY----YLH-TSQGTLNKE  256 (256)
Q Consensus       220 DFGla~~~~~~~~~~~~~~~Gt~~y----~~~-~~~~t~ksD  256 (256)
                      |||+++.+.....  .....||+.|    .+. ...++.++|
T Consensus       175 Dfg~a~~~~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~~D  214 (360)
T 3e3p_A          175 DFGSAKKLSPSEP--NVAYICSRYYRAPELIFGNQHYTTAVD  214 (360)
T ss_dssp             CCTTCBCCCTTSC--CCSTTSCGGGCCHHHHTTCSSCCTHHH
T ss_pred             eCCCceecCCCCC--cccccCCcceeCHHHHcCCCCCCcHHH
Confidence            9999997754332  2234589999    332 334677665

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens}

Probab=99.85  E-value=1.1e-21  Score=164.85  Aligned_cols=145  Identities=26%  Similarity=0.394  Sum_probs=107.5

Q ss_pred             cCCCcccceeeeeCceEEEEEEECCCcEEEEEEecccChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEecC
Q 047066          103 TNNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEFV  182 (256)
Q Consensus       103 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~  182 (256)
                      .++|++.+.||+|+||.||++.. .++.||+|.+...  ...+.+.+|+.++++++||||+++++++.  +..++||||+
T Consensus         7 ~~~~~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~--~~~~~~~~E~~~l~~l~hp~iv~~~~~~~--~~~~lv~e~~   81 (307)
T 2eva_A            7 YKEIEVEEVVGRGAFGVVCKAKW-RAKDVAIKQIESE--SERKAFIVELRQLSRVNHPNIVKLYGACL--NPVCLVMEYA   81 (307)
T ss_dssp             GGGEEEEEEEECCSSSEEEEEEE-TTEEEEEEECSST--THHHHHHHHHHHHHHCCCTTBCCEEEBCT--TTTEEEEECC
T ss_pred             HhHeeeeeEeecCCCceEEEEEE-CCeeEEEEEecCh--hHHHHHHHHHHHHhcCCCCCcCeEEEEEc--CCcEEEEEcC
Confidence            46788999999999999999998 4788999988643  34577899999999999999999999876  4478999999


Q ss_pred             CCCCC-------------CHHHHHHHHHHH----------------HhccCCCcEEEcCCCc-EEEEecCCceecCCCCc
Q 047066          183 KLPTI-------------SWEVRIRIAAET----------------AEDIKSINILLDDNYT-TKVCDFGASKLVPIDET  232 (256)
Q Consensus       183 ~~~~l-------------~~~~~~~~~~~i----------------~rdlk~~NiLi~~~~~-~ki~DFGla~~~~~~~~  232 (256)
                      ++++|             +....+.++.++                |+||||+|||++.++. +||+|||++......  
T Consensus        82 ~~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~~kl~Dfg~~~~~~~~--  159 (307)
T 2eva_A           82 EGGSLYNVLHGAEPLPYYTAAHAMSWCLQCSQGVAYLHSMQPKALIHRDLKPPNLLLVAGGTVLKICDFGTACDIQTH--  159 (307)
T ss_dssp             TTCBHHHHHHCSSSEECCCHHHHHHHHHHHHHHHHHHHTCSSSCCCCCCCSGGGEEEETTTTEEEECCCCC---------
T ss_pred             CCCCHHHHHhccCCCCccCHHHHHHHHHHHHHHHHHHHhCCCCCeecCCCChhHEEEeCCCCEEEEcccccccccccc--
Confidence            98765             333334444433                3699999999998886 799999999865432  


Q ss_pred             eeeeeeeecccc----cccccCCCCCCC
Q 047066          233 QLSTMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       233 ~~~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                        .....||+.|    .+.+..++.++|
T Consensus       160 --~~~~~gt~~y~aPE~~~~~~~~~~~D  185 (307)
T 2eva_A          160 --MTNNKGSAAWMAPEVFEGSNYSEKCD  185 (307)
T ss_dssp             -------CCTTSSCHHHHTCCCCCTHHH
T ss_pred             --cccCCCCCceEChhhhCCCCCCcHHH
Confidence              2234599999    555667777765

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*

Probab=99.85  E-value=3.8e-21  Score=163.52  Aligned_cols=147  Identities=20%  Similarity=0.312  Sum_probs=115.3

Q ss_pred             cChHHHHhhcCCCcccceeeeeCceEEEEEEECCCcEEEEEEecccChhHHHHHHHHHHHHHh--CCCCcccceeeEEEE
Q 047066           94 FTAGELKIATNNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQ--INHRNVVGLLGCCLE  171 (256)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~--l~h~niv~l~~~~~~  171 (256)
                      .+...-....++|.+.+.||+|+||.||+|.. +++.||+|.+...   ....+.+|.+++..  ++||||+++++++..
T Consensus        32 ~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~---~~~~~~~e~~~~~~~~l~h~ni~~~~~~~~~  107 (342)
T 1b6c_B           32 LPLLVQRTIARTIVLQESIGKGRFGEVWRGKW-RGEEVAVKIFSSR---EERSWFREAEIYQTVMLRHENILGFIAADNK  107 (342)
T ss_dssp             SCHHHHHHHHHHCEEEEEEEEETTEEEEEEEE-TTEEEEEEEECGG---GHHHHHHHHHHHHHSCCCCTTBCCEEEEEEC
T ss_pred             CceeecccccccEEEEeeecCCCCcEEEEEEE-cCccEEEEEeCch---hHHHHHHHHHHHHHhhcCCCcEEEEEeeecc
Confidence            34444445567899999999999999999998 6899999988643   33567889999887  789999999999987


Q ss_pred             CC----EEEEEEecCCCCCC---------CHHHHHHHHHHH---------------------HhccCCCcEEEcCCCcEE
Q 047066          172 TE----VPLLVNEFVKLPTI---------SWEVRIRIAAET---------------------AEDIKSINILLDDNYTTK  217 (256)
Q Consensus       172 ~~----~~~lv~e~~~~~~l---------~~~~~~~~~~~i---------------------~rdlk~~NiLi~~~~~~k  217 (256)
                      .+    ..+++|||+++++|         ++.....++.++                     |+||||+|||++.++.+|
T Consensus       108 ~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dlkp~NIll~~~~~~k  187 (342)
T 1b6c_B          108 DNGTWTQLWLVSDYHEHGSLFDYLNRYTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCC  187 (342)
T ss_dssp             CCSSCCCEEEEECCCTTCBHHHHHHHCCBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCEEECSCCSGGGEEECTTSCEE
T ss_pred             cCCccceeEEEEeecCCCcHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHhhhcccCCeeeCCCCHHHEEECCCCCEE
Confidence            65    79999999999776         344444444443                     359999999999999999


Q ss_pred             EEecCCceecCCCCcee---eeeeeecccc
Q 047066          218 VCDFGASKLVPIDETQL---STMVQGTLGY  244 (256)
Q Consensus       218 i~DFGla~~~~~~~~~~---~~~~~Gt~~y  244 (256)
                      |+|||+++.........   .....||+.|
T Consensus       188 L~Dfg~~~~~~~~~~~~~~~~~~~~gt~~y  217 (342)
T 1b6c_B          188 IADLGLAVRHDSATDTIDIAPNHRVGTKRY  217 (342)
T ss_dssp             ECCCTTCEEEETTTTEEEECCCSCCCCGGG
T ss_pred             EEECCCceeccccccccccccccCCcCccc
Confidence            99999998876544332   2334689998

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A

Probab=99.85  E-value=2.8e-22  Score=173.22  Aligned_cols=137  Identities=9%  Similarity=0.139  Sum_probs=105.1

Q ss_pred             hcCCCcccceeeeeCceEEEEEEE-CCCcEEEEEEecc---cChhHHHHHHHHHH---HHHhCCCCccccee-------e
Q 047066          102 ATNNYAYDRMIGRGGYGTVFLGSL-SDNKAIAIKKSRI---VYQSQIEQCINKVV---VLSQINHRNVVGLL-------G  167 (256)
Q Consensus       102 ~~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vavK~~~~---~~~~~~~~~~~E~~---~l~~l~h~niv~l~-------~  167 (256)
                      ..++|.+.+.||+|+||.||+|.. .+++.||+|.+..   ......+.+.+|+.   +++.++||||++++       +
T Consensus        71 ~~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~hpniv~~~~~~~~~~~  150 (377)
T 3byv_A           71 RPRTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFD  150 (377)
T ss_dssp             CCEEEEEEEEEEEETTEEEEEEEC-CCCCEEEEEEEEECC-CCTTHHHHHHHHHHGGGGSTTCCSHHHHHHHHCBCCCSE
T ss_pred             CCceEEEcceeecCCCEEEEEEEECCCCcEEEEEEEeeccccchHHHHHHHHHHHHHHhccccCCHHHHHHHhhhhhhhh
Confidence            456799999999999999999996 4689999999863   23445678999994   55566899999998       6


Q ss_pred             EEEECC-----------------EEEEEEecCCCCCCC-----------------HHHHHHHHHHHH-------------
Q 047066          168 CCLETE-----------------VPLLVNEFVKLPTIS-----------------WEVRIRIAAETA-------------  200 (256)
Q Consensus       168 ~~~~~~-----------------~~~lv~e~~~~~~l~-----------------~~~~~~~~~~i~-------------  200 (256)
                      ++...+                 ..+++|||+. |+|.                 +.....++.|++             
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~i~~~~lv~E~~~-g~L~~~l~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivH  229 (377)
T 3byv_A          151 LVKDPQKKKMIRVRLDERDMWVLSRFFLYPRMQ-SNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHHYGLVH  229 (377)
T ss_dssp             EEECTTSCSEEEC------CEEESEEEEEECCS-EEHHHHHHHHHHTTTTTHHHHHHHHHHHHHHHHHHHHHHHHTTEEC
T ss_pred             hhhccCCccccccccCCCceEEEEEEEEEeccC-CCHHHHHHhccccccccccccHHHHHHHHHHHHHHHHHHHhCCeec
Confidence            666543                 2889999994 4542                 234445666655             


Q ss_pred             hccCCCcEEEcCCCcEEEEecCCceecCCCCceeeeeeeecccc
Q 047066          201 EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTLGY  244 (256)
Q Consensus       201 rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~~~~Gt~~y  244 (256)
                      |||||+|||++.++.+||+|||+|+....    .....+| +.|
T Consensus       230 rDikp~NIll~~~~~~kL~DFG~a~~~~~----~~~~~~g-~~y  268 (377)
T 3byv_A          230 TYLRPVDIVLDQRGGVFLTGFEHLVRDGA----RVVSSVS-RGF  268 (377)
T ss_dssp             SCCCGGGEEECTTCCEEECCGGGCEETTC----EEECCCC-TTC
T ss_pred             CCCCHHHEEEcCCCCEEEEechhheecCC----cccCCCC-cCc
Confidence            69999999999999999999999996432    2334557 888

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*

Probab=99.85  E-value=1.5e-21  Score=161.34  Aligned_cols=153  Identities=20%  Similarity=0.320  Sum_probs=116.0

Q ss_pred             cCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEeccc--ChhHHHHHHHHHHHHHhCCCCcccceeeEEEE--CCEEEE
Q 047066          103 TNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIV--YQSQIEQCINKVVVLSQINHRNVVGLLGCCLE--TEVPLL  177 (256)
Q Consensus       103 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~--~~~~~l  177 (256)
                      .++|++.+.||+|+||.||++... +++.+|+|.+...  .....+.+.+|+.+++.++||||+++++++..  .+..++
T Consensus         5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~l   84 (279)
T 2w5a_A            5 AEDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYYDRIIDRTNTTLYI   84 (279)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEEGGGTEEEE
T ss_pred             hhheeeehhccCCCCcEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhcCCCCCCeEEEEEecCCCceEEE
Confidence            357899999999999999999976 6889999988643  34556789999999999999999999998865  678999


Q ss_pred             EEecCCCCCC--------------CHHHHHHHHHH------------------HHhccCCCcEEEcCCCcEEEEecCCce
Q 047066          178 VNEFVKLPTI--------------SWEVRIRIAAE------------------TAEDIKSINILLDDNYTTKVCDFGASK  225 (256)
Q Consensus       178 v~e~~~~~~l--------------~~~~~~~~~~~------------------i~rdlk~~NiLi~~~~~~ki~DFGla~  225 (256)
                      +|||+++++|              ++.....++.+                  +|+||||+||+++.++.+||+|||+++
T Consensus        85 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~ivH~dl~p~NIl~~~~~~~kl~dfg~~~  164 (279)
T 2w5a_A           85 VMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLAR  164 (279)
T ss_dssp             EEECCTTEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHC------CCCCCSGGGEEECSSSCEEECCCCHHH
T ss_pred             EEeCCCCCCHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHHhcccCCCCeeEEeccchhhEEEcCCCCEEEecCchhe
Confidence            9999988554              44444444433                  446999999999999999999999998


Q ss_pred             ecCCCCceeeeeeeecccc----cccccCCCCCCC
Q 047066          226 LVPIDETQLSTMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       226 ~~~~~~~~~~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      ........ .....||+.|    .+.+..++.++|
T Consensus       165 ~~~~~~~~-~~~~~~~~~y~aPE~~~~~~~~~~~D  198 (279)
T 2w5a_A          165 ILNHDTSF-AKTFVGTPYYMSPEQMNRMSYNEKSD  198 (279)
T ss_dssp             HC---CHH-HHHHHSCCTTCCHHHHHCC-CCHHHH
T ss_pred             eecccccc-ccccCCCccccChHHhccCCCCchhh
Confidence            76543221 1223588888    444455565554

>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A*

Probab=99.85  E-value=6.4e-21  Score=158.96  Aligned_cols=152  Identities=22%  Similarity=0.244  Sum_probs=121.2

Q ss_pred             hcCCCcccceeeeeCceEEEEEEE-CCCcEEEEEEecccChhHHHHHHHHHHHHHhC-CCCcccceeeEEEECCEEEEEE
Q 047066          102 ATNNYAYDRMIGRGGYGTVFLGSL-SDNKAIAIKKSRIVYQSQIEQCINKVVVLSQI-NHRNVVGLLGCCLETEVPLLVN  179 (256)
Q Consensus       102 ~~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~lv~  179 (256)
                      ..++|++.+.||+|+||.||+|.. .+++.||+|.+....  ..+.+.+|+.+++.+ +|+|++++++++......+++|
T Consensus         8 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~lv~   85 (298)
T 1csn_A            8 VGVHYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRS--DAPQLRDEYRTYKLLAGCTGIPNVYYFGQEGLHNVLVI   85 (298)
T ss_dssp             ETTTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEECCT--TSCCHHHHHHHHHHTTTCTTCCCEEEEEEETTEEEEEE
T ss_pred             cccceEEEEEEeecCCEEEEEEEECCCCcEEEEEEeccCC--ccHHHHHHHHHHHHHhcCCCCCeEEeecCCCceeEEEE
Confidence            446899999999999999999996 478999999875432  224577899999999 8999999999999999999999


Q ss_pred             ecCCCCC-----------CCHHHHHHHHHHHH-------------hccCCCcEEEcCCCc-----EEEEecCCceecCCC
Q 047066          180 EFVKLPT-----------ISWEVRIRIAAETA-------------EDIKSINILLDDNYT-----TKVCDFGASKLVPID  230 (256)
Q Consensus       180 e~~~~~~-----------l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~-----~ki~DFGla~~~~~~  230 (256)
                      ||+ +++           +++.....++.|++             +||||+|||++.++.     +||+|||+++.....
T Consensus        86 e~~-~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~Dlkp~NIl~~~~~~~~~~~~kl~Dfg~~~~~~~~  164 (298)
T 1csn_A           86 DLL-GPSLEDLLDLCGRKFSVKTVAMAAKQMLARVQSIHEKSLVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVKFYRDP  164 (298)
T ss_dssp             ECC-CCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHTTTEECCCCCGGGEEECCSSSTTTTCEEECCCTTCEESBCT
T ss_pred             Eec-CCCHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHEEeccCCCCCCCeEEEEECccccccccc
Confidence            999 543           56677777777766             599999999987775     999999999987654


Q ss_pred             Cce------eeeeeeecccc----cccccCCCCCCC
Q 047066          231 ETQ------LSTMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       231 ~~~------~~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      ...      ......||+.|    .+.+..++.++|
T Consensus       165 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~D  200 (298)
T 1csn_A          165 VTKQHIPYREKKNLSGTARYMSINTHLGREQSRRDD  200 (298)
T ss_dssp             TTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHH
T ss_pred             cccccccccCccCCCCCcccCCchhhcCCCCChHHH
Confidence            321      12345699999    455566676665

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*

Probab=99.85  E-value=3.8e-22  Score=166.68  Aligned_cols=159  Identities=19%  Similarity=0.326  Sum_probs=103.7

Q ss_pred             HHHhhcCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC-hhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEE
Q 047066           98 ELKIATNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY-QSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVP  175 (256)
Q Consensus        98 ~~~~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~  175 (256)
                      .+.+..++|++.+.||+|+||.||+|... ++..||+|.+.... ....+.+.+|+.+++.++||||+++++++...+..
T Consensus         9 p~~i~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~   88 (303)
T 2vwi_A            9 PWSINRDDYELQEVIGSGATAVVQAAYCAPKKEKVAIKRINLEKCQTSMDELLKEIQAMSQCHHPNIVSYYTSFVVKDEL   88 (303)
T ss_dssp             ----CCCCCEEEEECC---CCCEEEEEC----CEEEEECCC----------------CCCCCCCTTBCCEEEEEESSSCE
T ss_pred             ccccchhhhhhhheeccccceEEEEEEECCCCcEEEEEEEEhhhcchhHHHHHHHHHHHhhcCCCCEeeEEEEEeecCCc
Confidence            35566789999999999999999999854 68899999876433 33456788999999999999999999999999999


Q ss_pred             EEEEecCCCCC------------------CCHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCc
Q 047066          176 LLVNEFVKLPT------------------ISWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGAS  224 (256)
Q Consensus       176 ~lv~e~~~~~~------------------l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla  224 (256)
                      +++|||+++++                  +++.....++.|++             +||+|+||+++.++.+||+|||++
T Consensus        89 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~  168 (303)
T 2vwi_A           89 WLVMKLLSGGSVLDIIKHIVAKGEHKSGVLDESTIATILREVLEGLEYLHKNGQIHRDVKAGNILLGEDGSVQIADFGVS  168 (303)
T ss_dssp             EEEEECCTTCBHHHHHHHHHHTTTTTTCSSCHHHHHHHHHHHHHHHHHHHHTTCCCCCCSGGGEEECTTCCEEECCCHHH
T ss_pred             EEEehhccCCchHHHHHHHhhccccccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCCCCChhhEEEcCCCCEEEEeccch
Confidence            99999998765                  45555566666655             599999999999999999999999


Q ss_pred             eecCCCCc----eeeeeeeecccc----cccc-cCCCCCCC
Q 047066          225 KLVPIDET----QLSTMVQGTLGY----YLHT-SQGTLNKE  256 (256)
Q Consensus       225 ~~~~~~~~----~~~~~~~Gt~~y----~~~~-~~~t~ksD  256 (256)
                      ........    .......||+.|    .+.+ ..++.++|
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~D  209 (303)
T 2vwi_A          169 AFLATGGDITRNKVRKTFVGTPCWMAPEVMEQVRGYDFKAD  209 (303)
T ss_dssp             HHCC---------------CCCTTCCHHHHHHHHCCCTHHH
T ss_pred             heeccCCCccchhhhcccCCCccccCHHHhccccCCCchhh
Confidence            87643221    112334689988    2222 45666655

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens}

Probab=99.85  E-value=2.9e-21  Score=163.80  Aligned_cols=153  Identities=20%  Similarity=0.382  Sum_probs=109.9

Q ss_pred             cCCCcccceeeeeCceEEEEEEEC-CCc----EEEEEEeccc-ChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEE
Q 047066          103 TNNYAYDRMIGRGGYGTVFLGSLS-DNK----AIAIKKSRIV-YQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPL  176 (256)
Q Consensus       103 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~----~vavK~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~  176 (256)
                      .++|++.+.||+|+||.||+|.+. ++.    .|++|.+... .....+.+.+|+.+++.++||||+++++++...+ .+
T Consensus        14 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~iK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~-~~   92 (327)
T 3lzb_A           14 ETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTST-VQ   92 (327)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEECCTTCSCCEEEEEEEECCCSSCCCHHHHHHHHHHHTTCCBTTBCCCCEEEESSS-EE
T ss_pred             HhHceEEEEeeeCCCeEEEEEEEcCCCceEEEEEEEEeeccccCHHHHHHHHHHHHHHHhCCCCCeeEEEEEEecCC-ce
Confidence            467999999999999999999964 444    3577776543 3445578999999999999999999999998765 77


Q ss_pred             EEEecCCCCC-----------CCHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCc
Q 047066          177 LVNEFVKLPT-----------ISWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDET  232 (256)
Q Consensus       177 lv~e~~~~~~-----------l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~  232 (256)
                      +++||+.+++           +++.....++.|++             +||||+|||++.++.+||+|||+++.......
T Consensus        93 ~v~~~~~~g~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dikp~NIl~~~~~~~kL~DfG~a~~~~~~~~  172 (327)
T 3lzb_A           93 LITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEK  172 (327)
T ss_dssp             EEECCCSSCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEEETTEEEECCTTC---------
T ss_pred             EEEEecCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhhCCCcCCCCCHHHEEEcCCCCEEEccCcceeEccCccc
Confidence            8899998755           45555666666655             69999999999999999999999987754332


Q ss_pred             ee-eeeeeecccc----cccccCCCCCCC
Q 047066          233 QL-STMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       233 ~~-~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      .. .....||+.|    .+.+..++.++|
T Consensus       173 ~~~~~~~~~t~~y~aPE~~~~~~~~~~~D  201 (327)
T 3lzb_A          173 EYHAEGGKVPIKWMALESILHRIYTHQSD  201 (327)
T ss_dssp             -------CCCGGGSCHHHHHHCCCCHHHH
T ss_pred             cccccCCCccccccCHHHHcCCCCChHHH
Confidence            21 2233467778    455566666655

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens}

Probab=99.85  E-value=8e-21  Score=158.98  Aligned_cols=142  Identities=20%  Similarity=0.224  Sum_probs=112.3

Q ss_pred             cCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC----hhHHHHHHHHHHHHHhCCCCcccceeeEEE--ECCEE
Q 047066          103 TNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY----QSQIEQCINKVVVLSQINHRNVVGLLGCCL--ETEVP  175 (256)
Q Consensus       103 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~----~~~~~~~~~E~~~l~~l~h~niv~l~~~~~--~~~~~  175 (256)
                      .++|.+.+.||+|+||.||++... ++..+|+|.+....    ....+.+.+|+.+++.++||||+++++++.  ..+..
T Consensus         4 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~   83 (305)
T 2wtk_C            4 IGKYLMGDLLGEGSYGKVKEVLDSETLCRRAVKILKKKKLRRIPNGEANVKKEIQLLRRLRHKNVIQLVDVLYNEEKQKM   83 (305)
T ss_dssp             -CCBCCCCEEEECSSCEEEEEEBTTTCCEEEEEEECHHHHHHSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEECC---CE
T ss_pred             ccceeEeeEEecCCCeEEEEEEECCCCcEEEEEEeccccccccchhHHHHHHHHHHHHhcCCCCeeEEEEEEEcCCCCeE
Confidence            368999999999999999999975 68899999886432    234577999999999999999999999985  45678


Q ss_pred             EEEEecCCCC-----------CCCHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCC
Q 047066          176 LLVNEFVKLP-----------TISWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDE  231 (256)
Q Consensus       176 ~lv~e~~~~~-----------~l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~  231 (256)
                      +++|||++++           .+++.....++.|++             +||||+||+++.++.+||+|||++.......
T Consensus        84 ~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~~~i~H~dlkp~NIl~~~~~~~kl~dfg~~~~~~~~~  163 (305)
T 2wtk_C           84 YMVMEYCVCGMQEMLDSVPEKRFPVCQAHGYFCQLIDGLEYLHSQGIVHKDIKPGNLLLTTGGTLKISALGVAEALHPFA  163 (305)
T ss_dssp             EEEEECCSEEHHHHHHHSTTCSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECCCTTCEECCTTC
T ss_pred             EEEehhccCCHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHHHCCeeecCCCcccEEEcCCCcEEeeccccccccCccc
Confidence            9999999763           466666667776665             5999999999999999999999998765322


Q ss_pred             -ceeeeeeeecccc
Q 047066          232 -TQLSTMVQGTLGY  244 (256)
Q Consensus       232 -~~~~~~~~Gt~~y  244 (256)
                       ........||+.|
T Consensus       164 ~~~~~~~~~~~~~y  177 (305)
T 2wtk_C          164 ADDTCRTSQGSPAF  177 (305)
T ss_dssp             SSCEECCCCSCGGG
T ss_pred             cccccccCCCCCCC
Confidence             1222334588888

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A*

Probab=99.85  E-value=2.7e-21  Score=163.78  Aligned_cols=151  Identities=27%  Similarity=0.428  Sum_probs=112.0

Q ss_pred             CCCcccceeeeeCceEEEEEEEC-CCcE--EEEEEecccC-hhHHHHHHHHHHHHHhC-CCCcccceeeEEEECCEEEEE
Q 047066          104 NNYAYDRMIGRGGYGTVFLGSLS-DNKA--IAIKKSRIVY-QSQIEQCINKVVVLSQI-NHRNVVGLLGCCLETEVPLLV  178 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~--vavK~~~~~~-~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~lv  178 (256)
                      ++|++.+.||+|+||.||+|... ++..  +++|.+.... ....+.+.+|+.+++++ +||||+++++++...+..+++
T Consensus        25 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~~lv  104 (327)
T 1fvr_A           25 NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLA  104 (327)
T ss_dssp             GGCEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC------CHHHHHHHHHTTCCCCTTBCCEEEEEEETTEEEEE
T ss_pred             HHccceeeeecCCCceEEEEEEccCCcccceeeeeeccccchHHHHHHHHHHHHHHhccCCCchhhhceeeeeCCceEEE
Confidence            67899999999999999999864 5654  4888876432 34456789999999999 899999999999999999999


Q ss_pred             EecCCCCC--------------------------CCHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEE
Q 047066          179 NEFVKLPT--------------------------ISWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVC  219 (256)
Q Consensus       179 ~e~~~~~~--------------------------l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~  219 (256)
                      |||+++++                          +++.....++.+++             +||||+|||++.++.+||+
T Consensus       105 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~dlkp~NIl~~~~~~~kL~  184 (327)
T 1fvr_A          105 IEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQKQFIHRDLAARNILVGENYVAKIA  184 (327)
T ss_dssp             ECCCTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECGGGCEEEC
T ss_pred             EecCCCCCHHHHHHhcccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhCCccCCCCccceEEEcCCCeEEEc
Confidence            99998854                          45555566666655             6999999999999999999


Q ss_pred             ecCCceecCCCCceeeeeeeecccc----cccccCCCCCCC
Q 047066          220 DFGASKLVPIDETQLSTMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       220 DFGla~~~~~~~~~~~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      |||+++......  ......+|+.|    .+.+..++.++|
T Consensus       185 Dfg~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~D  223 (327)
T 1fvr_A          185 DFGLSRGQEVYV--KKTMGRLPVRWMAIESLNYSVYTTNSD  223 (327)
T ss_dssp             CTTCEESSCEEC--CC----CCTTTCCHHHHHHCEECHHHH
T ss_pred             ccCcCccccccc--cccCCCCCccccChhhhccccCCchhc
Confidence            999998532211  12223467777    333444455444

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...

Probab=99.84  E-value=4.7e-21  Score=167.96  Aligned_cols=147  Identities=24%  Similarity=0.304  Sum_probs=112.4

Q ss_pred             CCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccChhHHHHHHHHHHHHHhCCCCcccceeeEEEEC------CEEE
Q 047066          104 NNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLET------EVPL  176 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~------~~~~  176 (256)
                      .+|++.+.||+|+||.||+|.+. +++.||+|++.....    ...+|+++++.++||||+++++++...      ...+
T Consensus        54 ~~y~~~~~lG~G~fg~Vy~~~~~~~~~~vaiK~~~~~~~----~~~~E~~il~~l~hpniv~l~~~~~~~~~~~~~~~~~  129 (420)
T 1j1b_A           54 VSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKR----FKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLN  129 (420)
T ss_dssp             EEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECCTT----SCCHHHHHHHTCCCTTBCCEEEEEEEEETTTTEEEEE
T ss_pred             ceEEeeeEEeeCCCEEEEEEEECCCCcEEEEEEecccch----hHHHHHHHHHHcCCCCccceeeEEeccCCCCcceeEE
Confidence            46899999999999999999985 689999998864322    234699999999999999999998642      2367


Q ss_pred             EEEecCCC-------------CCCCHHHHHHHHHHHH-------------hccCCCcEEEcCC-CcEEEEecCCceecCC
Q 047066          177 LVNEFVKL-------------PTISWEVRIRIAAETA-------------EDIKSINILLDDN-YTTKVCDFGASKLVPI  229 (256)
Q Consensus       177 lv~e~~~~-------------~~l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~-~~~ki~DFGla~~~~~  229 (256)
                      +||||+++             +.+++.....++.|++             |||||+|||++.+ +.+||+|||+|+.+..
T Consensus       130 lv~e~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~NILl~~~~~~~kl~DFG~a~~~~~  209 (420)
T 1j1b_A          130 LVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSFGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVR  209 (420)
T ss_dssp             EEEECCCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHTTTEECSCCSGGGEEEETTTTEEEECCCTTCEECCT
T ss_pred             eehhcccccHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCChhhEEEeCCCCeEEeccchhhhhccc
Confidence            89999975             4466666666666655             6999999999965 5789999999998654


Q ss_pred             CCceeeeeeeecccc----cccc-cCCCCCCC
Q 047066          230 DETQLSTMVQGTLGY----YLHT-SQGTLNKE  256 (256)
Q Consensus       230 ~~~~~~~~~~Gt~~y----~~~~-~~~t~ksD  256 (256)
                      ...  .....||+.|    .+.+ ..++.++|
T Consensus       210 ~~~--~~~~~~t~~y~aPE~~~~~~~~~~~~D  239 (420)
T 1j1b_A          210 GEP--NVSYICSRYYRAPELIFGATDYTSSID  239 (420)
T ss_dssp             TCC--CCSCCSCTTSCCHHHHTTCSSCCTHHH
T ss_pred             CCC--ceeeeeCCCcCCHHHHcCCCCCCchhh
Confidence            332  2334689999    3333 36777665

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*

Probab=99.84  E-value=2.6e-21  Score=160.71  Aligned_cols=137  Identities=31%  Similarity=0.544  Sum_probs=107.7

Q ss_pred             hcCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccCh---hH----HHHHHHHHHHHHhCCCCcccceeeEEEECC
Q 047066          102 ATNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVYQ---SQ----IEQCINKVVVLSQINHRNVVGLLGCCLETE  173 (256)
Q Consensus       102 ~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~---~~----~~~~~~E~~~l~~l~h~niv~l~~~~~~~~  173 (256)
                      ..++|++.+.||+|+||.||+|... +++.||+|.+.....   ..    .+.+.+|+.+++.++||||+++++++.+..
T Consensus        17 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~   96 (287)
T 4f0f_A           17 ADNEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPNIVKLYGLMHNPP   96 (287)
T ss_dssp             CSTTEEEEEECCCCSSSCEEEEEETTTCCEEEEEECCCCTTTCCHHHHCCSHHHHHHHHHHTTCCCTTBCCEEEEETTTT
T ss_pred             hhccceehhccccCCceeEEEEEEcCCceEEEEEEeeccccccchhHHHHHHHHHHHHHHHHhCCCCCchhhheeecCCC
Confidence            3478999999999999999999975 788999998754321   11    167899999999999999999999987655


Q ss_pred             EEEEEEecCCCCCC-----------CHHHHHHHHHHHH---------------hccCCCcEEEcCCCc-----EEEEecC
Q 047066          174 VPLLVNEFVKLPTI-----------SWEVRIRIAAETA---------------EDIKSINILLDDNYT-----TKVCDFG  222 (256)
Q Consensus       174 ~~~lv~e~~~~~~l-----------~~~~~~~~~~~i~---------------rdlk~~NiLi~~~~~-----~ki~DFG  222 (256)
                        +++|||+++++|           ++.....++.+++               +||||+|||++.++.     +||+|||
T Consensus        97 --~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~~~ivH~dikp~Nil~~~~~~~~~~~~kl~Dfg  174 (287)
T 4f0f_A           97 --RMVMEFVPCGDLYHRLLDKAHPIKWSVKLRLMLDIALGIEYMQNQNPPIVHRDLRSPNIFLQSLDENAPVCAKVADFG  174 (287)
T ss_dssp             --EEEEECCTTCBHHHHHHCTTSCCCHHHHHHHHHHHHHHHHHHHTSSSCCBCSCCSGGGEEESCCCTTCSCCEEECCCT
T ss_pred             --eEEEEecCCCCHHHHHhcccCCccHHHHHHHHHHHHHHHHHHHhCCCCeecCCCCcceEEEeccCCCCceeEEeCCCC
Confidence              699999987654           5555555555443               699999999988776     9999999


Q ss_pred             CceecCCCCceeeeeeeecccc
Q 047066          223 ASKLVPIDETQLSTMVQGTLGY  244 (256)
Q Consensus       223 la~~~~~~~~~~~~~~~Gt~~y  244 (256)
                      +++.....    .....||+.|
T Consensus       175 ~~~~~~~~----~~~~~g~~~y  192 (287)
T 4f0f_A          175 LSQQSVHS----VSGLLGNFQW  192 (287)
T ss_dssp             TCBCCSSC----EECCCCCCTT
T ss_pred             cccccccc----ccccCCCccc
Confidence            99864332    2334689988

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*

Probab=99.84  E-value=4.9e-21  Score=163.29  Aligned_cols=138  Identities=23%  Similarity=0.340  Sum_probs=113.1

Q ss_pred             cCCCcccceeeeeCceEEEEEEECCCcEEEEEEecccChh-----------------HHHHHHHHHHHHHhCCCCcccce
Q 047066          103 TNNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQS-----------------QIEQCINKVVVLSQINHRNVVGL  165 (256)
Q Consensus       103 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~-----------------~~~~~~~E~~~l~~l~h~niv~l  165 (256)
                      .++|++.+.||+|+||.||+|.. +++.||+|.+......                 ..+.+.+|+.+++.++||||+++
T Consensus        30 ~~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~  108 (348)
T 2pml_X           30 INDYRIIRTLNQGKFNKIILCEK-DNKFYALKKYEKSLLEKKRDFTKSNNDKISIKSKYDDFKNELQIITDIKNEYCLTC  108 (348)
T ss_dssp             ETTEEEEEEEECCSSCCEEEEEE-TTEEEEEEEEEHHHHSSCEEECCCSSSSCCEEEHHHHHHHHHHHHTTCCCTTBCCC
T ss_pred             cCceEEEEEEcCCCCeEEEEEEc-CCceEEEEEeecccccchhhhccccchhhhHHhHHHHHHHHHHHHHhCCCCCcceE
Confidence            46899999999999999999999 9999999987543211                 12778999999999999999999


Q ss_pred             eeEEEECCEEEEEEecCCCCCC------------------CHHHHHHHHHHHH--------------hccCCCcEEEcCC
Q 047066          166 LGCCLETEVPLLVNEFVKLPTI------------------SWEVRIRIAAETA--------------EDIKSINILLDDN  213 (256)
Q Consensus       166 ~~~~~~~~~~~lv~e~~~~~~l------------------~~~~~~~~~~~i~--------------rdlk~~NiLi~~~  213 (256)
                      ++++...+..++||||+++++|                  ++.....++.+++              +||+|+||+++.+
T Consensus       109 ~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~~i~H~dl~p~Nil~~~~  188 (348)
T 2pml_X          109 EGIITNYDEVYIIYEYMENDSILKFDEYFFVLDKNYTCFIPIQVIKCIIKSVLNSFSYIHNEKNICHRDVKPSNILMDKN  188 (348)
T ss_dssp             SEEEESSSEEEEEEECCTTCBSSEESSSEESSCSSSCCCCCHHHHHHHHHHHHHHHHHHHHTSCEECCCCCGGGEEECTT
T ss_pred             EEEEeeCCeEEEEEeccCCCcHHHHHHHhhhhhhccccCCCHHHHHHHHHHHHHHHHHHhccCCEeecCCChHhEEEcCC
Confidence            9999999999999999987554                  4444555555444              5999999999999


Q ss_pred             CcEEEEecCCceecCCCCceeeeeeeecccc
Q 047066          214 YTTKVCDFGASKLVPIDETQLSTMVQGTLGY  244 (256)
Q Consensus       214 ~~~ki~DFGla~~~~~~~~~~~~~~~Gt~~y  244 (256)
                      +.+||+|||++......   ......||+.|
T Consensus       189 ~~~kl~dfg~~~~~~~~---~~~~~~~~~~y  216 (348)
T 2pml_X          189 GRVKLSDFGESEYMVDK---KIKGSRGTYEF  216 (348)
T ss_dssp             SCEEECCCTTCEECBTT---EECSSCSCGGG
T ss_pred             CcEEEeccccccccccc---cccCCCCCcCc
Confidence            99999999999886543   22334588888

>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}

Probab=99.84  E-value=2.1e-21  Score=165.77  Aligned_cols=154  Identities=18%  Similarity=0.242  Sum_probs=113.0

Q ss_pred             hcCCCcccceeeeeCceEEEEEEEC----CCcEEEEEEecccChhH-----------HHHHHHHHHHHHhCCCCccccee
Q 047066          102 ATNNYAYDRMIGRGGYGTVFLGSLS----DNKAIAIKKSRIVYQSQ-----------IEQCINKVVVLSQINHRNVVGLL  166 (256)
Q Consensus       102 ~~~~~~~~~~lg~G~~g~V~~~~~~----~~~~vavK~~~~~~~~~-----------~~~~~~E~~~l~~l~h~niv~l~  166 (256)
                      ..++|.+.+.||+|+||.||+|...    ++..+|+|.........           ...+.+|+..+..++||||++++
T Consensus        35 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~ni~~~~  114 (345)
T 2v62_A           35 EGNQWVLGKKIGSGGFGLIYLAFPTNKPEKDARHVVKVEYQENGPLFSELKFYQRVAKKDCIKKWIERKQLDYLGIPLFY  114 (345)
T ss_dssp             TSCEEEEEEEC------CEEEEEESSSCGGGCCEEEEEEECC-CHHHHHHHHHHHHCCHHHHHHHHHHHTCSCCCCCCEE
T ss_pred             cCceEEEEeeEeecCCeEEEEEEecCCCCccceEEEEeeecCCcchHHHHHHHHHHhhhHHHHHHHhhccccccCcceee
Confidence            3468999999999999999999975    46789999876543211           12467788999999999999999


Q ss_pred             eEEEE----CCEEEEEEecCCCC----------CCCHHHHHHHHHHHH-------------hccCCCcEEEcCCC--cEE
Q 047066          167 GCCLE----TEVPLLVNEFVKLP----------TISWEVRIRIAAETA-------------EDIKSINILLDDNY--TTK  217 (256)
Q Consensus       167 ~~~~~----~~~~~lv~e~~~~~----------~l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~--~~k  217 (256)
                      +++..    .+..+++|||+ ++          .+++.....++.|++             +||||+|||++.++  .+|
T Consensus       115 ~~~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~~~k  193 (345)
T 2v62_A          115 GSGLTEFKGRSYRFMVMERL-GIDLQKISGQNGTFKKSTVLQLGIRMLDVLEYIHENEYVHGDIKAANLLLGYKNPDQVY  193 (345)
T ss_dssp             EEEEEESSSCEEEEEEEECE-EEEHHHHCBGGGBCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEESSSTTSEE
T ss_pred             cccccccCCCcEEEEEEecc-CCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCcCHHHEEEccCCCCcEE
Confidence            99988    77899999999 54          457777777777776             59999999999887  999


Q ss_pred             EEecCCceecCCCCce------eeeeeeecccc----cccccCCCCCCC
Q 047066          218 VCDFGASKLVPIDETQ------LSTMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       218 i~DFGla~~~~~~~~~------~~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      |+|||+|+.+..+...      ......||+.|    .+.+..++.++|
T Consensus       194 L~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~D  242 (345)
T 2v62_A          194 LADYGLSYRYCPNGNHKQYQENPRKGHNGTIEFTSLDAHKGVALSRRSD  242 (345)
T ss_dssp             ECCCTTCEESSGGGCCCCCCCCGGGCSCSCTTTCCHHHHHTCCCCHHHH
T ss_pred             EEeCCCceecccccccccchhccccccCCCccccCHHHhcCCCCCchhh
Confidence            9999999876432111      11334699999    455556676665

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A*

Probab=99.84  E-value=1e-20  Score=157.25  Aligned_cols=152  Identities=21%  Similarity=0.273  Sum_probs=120.2

Q ss_pred             cCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC--hhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEE
Q 047066          103 TNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY--QSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVN  179 (256)
Q Consensus       103 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~  179 (256)
                      .++|++.+.||+|+||.||+|... +++.||+|.+....  ....+.+.+|+.++++++||||+++++++...+..++++
T Consensus        21 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~  100 (287)
T 2wei_A           21 AERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILEDSSSFYIVG  100 (287)
T ss_dssp             HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGBSSSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             hhcceeeEEEcCCCCEEEEEEEEcCCCcEEEEEEecccccchHHHHHHHHHHHHHHhccCCCccEEEEEEeCCCeEEEEE
Confidence            467999999999999999999976 68899999875432  344578899999999999999999999999999999999


Q ss_pred             ecCCCCCC----------CHHHHHHHHHHHH-------------hccCCCcEEEcCC---CcEEEEecCCceecCCCCce
Q 047066          180 EFVKLPTI----------SWEVRIRIAAETA-------------EDIKSINILLDDN---YTTKVCDFGASKLVPIDETQ  233 (256)
Q Consensus       180 e~~~~~~l----------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~---~~~ki~DFGla~~~~~~~~~  233 (256)
                      ||+++++|          ++.....++.+++             +||+|+||+++.+   +.+||+|||++.........
T Consensus       101 e~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~~l~~LH~~~i~H~dl~p~NIlv~~~~~~~~~kL~Dfg~~~~~~~~~~~  180 (287)
T 2wei_A          101 ELYTGGELFDEIIKRKRFSEHDAARIIKQVFSGITYMHKHNIVHRDLKPENILLESKEKDCDIKIIDFGLSTCFQQNTKM  180 (287)
T ss_dssp             CCCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEESCSSTTCCEEECSTTGGGTBCCCSSC
T ss_pred             EccCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCChhhEEEecCCCcccEEEeccCcceeecCCCcc
Confidence            99988664          5555666666665             5999999999754   47999999999876543221


Q ss_pred             eeeeeeecccc---cccccCCCCCCC
Q 047066          234 LSTMVQGTLGY---YLHTSQGTLNKE  256 (256)
Q Consensus       234 ~~~~~~Gt~~y---~~~~~~~t~ksD  256 (256)
                        ....||+.|   +...+.++.++|
T Consensus       181 --~~~~~~~~y~aPE~~~~~~~~~~D  204 (287)
T 2wei_A          181 --KDRIGTAYYIAPEVLRGTYDEKCD  204 (287)
T ss_dssp             --SCHHHHHTTCCHHHHTTCCCTHHH
T ss_pred             --ccccCcccccChHHhcCCCCCchh
Confidence              223478888   444455666655

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*

Probab=99.84  E-value=2.3e-21  Score=164.12  Aligned_cols=156  Identities=19%  Similarity=0.279  Sum_probs=116.0

Q ss_pred             hhcCCCcccceeeeeCceEEEEEEE------CCCcEEEEEEeccc-ChhHHHHHHHHHHHHHhCCCCcccceeeEEEECC
Q 047066          101 IATNNYAYDRMIGRGGYGTVFLGSL------SDNKAIAIKKSRIV-YQSQIEQCINKVVVLSQINHRNVVGLLGCCLETE  173 (256)
Q Consensus       101 ~~~~~~~~~~~lg~G~~g~V~~~~~------~~~~~vavK~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~  173 (256)
                      +..++|++.+.||+|+||.||+|..      .++..||+|.+... ......++.+|+.+++.++||||+++++++...+
T Consensus        27 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~  106 (327)
T 2yfx_A           27 VPRKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQSL  106 (327)
T ss_dssp             CCGGGCEEEEECC--CSSCEEEEEC--------CCEEEEEECCSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS
T ss_pred             CChhheEEEEEEcCCCCeeEEEEEEcCCCCCCccceEEEEEeccccchhhHHHHHHHHHHHhhCCCCCCCeEEEEEcCCC
Confidence            4567899999999999999999983      24678999998644 3445578999999999999999999999999998


Q ss_pred             EEEEEEecCCCCC-----------------CCHHHHHHHHHHHH-------------hccCCCcEEEcC---CCcEEEEe
Q 047066          174 VPLLVNEFVKLPT-----------------ISWEVRIRIAAETA-------------EDIKSINILLDD---NYTTKVCD  220 (256)
Q Consensus       174 ~~~lv~e~~~~~~-----------------l~~~~~~~~~~~i~-------------rdlk~~NiLi~~---~~~~ki~D  220 (256)
                      ..+++|||+++++                 +++.....++.+++             +||||+|||++.   +..+||+|
T Consensus       107 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH~~~i~H~dlkp~NIli~~~~~~~~~kl~D  186 (327)
T 2yfx_A          107 PRFILMELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEENHFIHRDIAARNCLLTCPGPGRVAKIGD  186 (327)
T ss_dssp             SCEEEEECCTTEEHHHHHHHTSCCSSSTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEESCSSTTCCEEECC
T ss_pred             CcEEEEecCCCCcHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHHHhhCCeecCcCCHhHEEEecCCCcceEEECc
Confidence            9999999997744                 45555666666655             599999999984   44699999


Q ss_pred             cCCceecCCCCce-eeeeeeecccc----cccccCCCCCCC
Q 047066          221 FGASKLVPIDETQ-LSTMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       221 FGla~~~~~~~~~-~~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      ||+++........ ......||+.|    .+.++.++.++|
T Consensus       187 fg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~D  227 (327)
T 2yfx_A          187 FGMARDIYRASYYRKGGCAMLPVKWMPPEAFMEGIFTSKTD  227 (327)
T ss_dssp             CHHHHHHHC------CCGGGSCGGGCCHHHHHHCCCCHHHH
T ss_pred             cccccccccccccccCCCcCCCcceeCHhHhcCCCCCchhh
Confidence            9999865433221 12223478888    444556666554

>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B

Probab=99.84  E-value=5.8e-21  Score=161.32  Aligned_cols=153  Identities=29%  Similarity=0.371  Sum_probs=116.6

Q ss_pred             hcCCCcccceeeeeCceEEEEEEEC--CCcEEEEEEecccC--hhHHHHHHHHHHHHHhC---CCCcccceeeEEE----
Q 047066          102 ATNNYAYDRMIGRGGYGTVFLGSLS--DNKAIAIKKSRIVY--QSQIEQCINKVVVLSQI---NHRNVVGLLGCCL----  170 (256)
Q Consensus       102 ~~~~~~~~~~lg~G~~g~V~~~~~~--~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l---~h~niv~l~~~~~----  170 (256)
                      ..++|++.+.||+|+||.||+|...  +++.||+|.+....  ......+.+|+.+++.+   +||||+++++++.    
T Consensus         9 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~~~   88 (326)
T 1blx_A            9 ADQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRT   88 (326)
T ss_dssp             GGGTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTTSCBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEEEC
T ss_pred             chhceeeeeeecccccEEEEEEEecCCCCEEEEEEEeccCcccccCCchhhHHHHHHHhhhccCCCCeEeeeeeeeeccc
Confidence            3478999999999999999999973  57899999875432  22223566777777666   8999999999987    


Q ss_pred             -ECCEEEEEEecCCC-----------CCCCHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCce
Q 047066          171 -ETEVPLLVNEFVKL-----------PTISWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASK  225 (256)
Q Consensus       171 -~~~~~~lv~e~~~~-----------~~l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~  225 (256)
                       .....+++|||+.+           +.+++.....++.|++             +||||+|||++.++.+||+|||+++
T Consensus        89 ~~~~~~~lv~e~~~~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~gi~H~dlkp~Nili~~~~~~kl~Dfg~~~  168 (326)
T 1blx_A           89 DRETKLTLVFEHVDQDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLHSHRVVHRDLKPQNILVTSSGQIKLADFGLAR  168 (326)
T ss_dssp             SSEEEEEEEEECCSCBHHHHHHHSCTTCSCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTCCEEECSCCSCC
T ss_pred             CCCceEEEEEecCCCCHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHCCceeccCCHHHeEEcCCCCEEEecCcccc
Confidence             45678999999975           2256666667776665             5999999999999999999999998


Q ss_pred             ecCCCCceeeeeeeecccc----cccccCCCCCCC
Q 047066          226 LVPIDETQLSTMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       226 ~~~~~~~~~~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      ......  ......||+.|    .+.++.++.++|
T Consensus       169 ~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~D  201 (326)
T 1blx_A          169 IYSFQM--ALTSVVVTLWYRAPEVLLQSSYATPVD  201 (326)
T ss_dssp             CCCGGG--GGCCCCCCCTTCCHHHHTTCCCCTHHH
T ss_pred             cccCCC--CccccccccceeCHHHHhcCCCCcchh
Confidence            764322  12334689988    455566777665

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}

Probab=99.84  E-value=4.1e-21  Score=162.97  Aligned_cols=141  Identities=26%  Similarity=0.416  Sum_probs=104.4

Q ss_pred             HhhcCCCcccceeeeeCceEEEEEEECCCcEEEEEEecccChhHHHHHHHHHHH--HHhCCCCcccceeeEEEE-----C
Q 047066          100 KIATNNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVV--LSQINHRNVVGLLGCCLE-----T  172 (256)
Q Consensus       100 ~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~--l~~l~h~niv~l~~~~~~-----~  172 (256)
                      .+..++|++.+.||+|+||.||+|.. +++.||+|.+....   ...+..|.++  +..++||||+++++.+..     .
T Consensus         9 ~~~~~~y~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~~---~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~   84 (336)
T 3g2f_A            9 SLDLDNLKLLELIGRGRYGAVYKGSL-DERPVAVKVFSFAN---RQNFINEKNIYRVPLMEHDNIARFIVGDERVTADGR   84 (336)
T ss_dssp             CCCTTSEEEEEEEEECSSEEEEEEEE-TTEEEEEEEEEGGG---HHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECTTSC
T ss_pred             CcChHHhheeeecccCCCeEEEEEEE-CCeEEEEEEeeccc---hhhHHHHHHHHHHHhccCcchhhheecccccccCCC
Confidence            34557899999999999999999987 78999999886433   2344455555  445799999999986653     2


Q ss_pred             CEEEEEEecCCCCCCC---------HHHHHHHHHHH----------------------HhccCCCcEEEcCCCcEEEEec
Q 047066          173 EVPLLVNEFVKLPTIS---------WEVRIRIAAET----------------------AEDIKSINILLDDNYTTKVCDF  221 (256)
Q Consensus       173 ~~~~lv~e~~~~~~l~---------~~~~~~~~~~i----------------------~rdlk~~NiLi~~~~~~ki~DF  221 (256)
                      ...++||||+++++|.         +.....++.|+                      ||||||+|||++.++.+||+||
T Consensus        85 ~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~~~~~~~ivH~Dikp~Nill~~~~~~kL~DF  164 (336)
T 3g2f_A           85 MEYLLVMEYYPNGSLXKYLSLHTSDWVSSCRLAHSVTRGLAYLHTELPRGDHYKPAISHRDLNSRNVLVKNDGTCVISDF  164 (336)
T ss_dssp             EEEEEEECCCTTCBHHHHHHHCCBCHHHHHHHHHHHHHHHHHHHCCBCCGGGCBCCEECSSCSGGGEEECTTSCEEECCC
T ss_pred             ceEEEEEecCCCCcHHHHHhhcccchhHHHHHHHHHHHHHHHHHhhhccccccccceeecccccceEEEcCCCcEEEeec
Confidence            3578999999998763         33344444443                      4699999999999999999999


Q ss_pred             CCceecCCCCc-------eeeeeeeecccc
Q 047066          222 GASKLVPIDET-------QLSTMVQGTLGY  244 (256)
Q Consensus       222 Gla~~~~~~~~-------~~~~~~~Gt~~y  244 (256)
                      |+|+.+..+..       .......||+.|
T Consensus       165 G~a~~~~~~~~~~~~~~~~~~~~~~gt~~y  194 (336)
T 3g2f_A          165 GLSMRLTGNRLVRPGEEDNAAISEVGTIRY  194 (336)
T ss_dssp             TTCEECSSSSCC---------CCTTSCGGG
T ss_pred             cceeecccccccCccccccccccCCCccce
Confidence            99987754321       111233589999

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B*

Probab=99.83  E-value=3.5e-21  Score=160.00  Aligned_cols=154  Identities=21%  Similarity=0.353  Sum_probs=107.7

Q ss_pred             hcCCCcccceeeeeCceEEEEEEEC--CCc--EEEEEEeccc---ChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCE
Q 047066          102 ATNNYAYDRMIGRGGYGTVFLGSLS--DNK--AIAIKKSRIV---YQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEV  174 (256)
Q Consensus       102 ~~~~~~~~~~lg~G~~g~V~~~~~~--~~~--~vavK~~~~~---~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~  174 (256)
                      ..++|++.+.||+|+||.||+|.+.  ++.  .||+|.++..   .....+.+.+|+.+++.++||||+++++++...+ 
T Consensus        16 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~-   94 (291)
T 1u46_A           16 GEKDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLTPP-   94 (291)
T ss_dssp             CGGGEEEEEECC----CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS-
T ss_pred             chhHeeeeeeecCCCceeEEEEEeccCCCceeEEEEEEEccCccCCHHHHHHHHHHHHHHHhCCCCCcccEEEEEccCC-
Confidence            3468999999999999999999853  233  6899987643   2345678999999999999999999999998765 


Q ss_pred             EEEEEecCCCCCC-----------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCC
Q 047066          175 PLLVNEFVKLPTI-----------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPID  230 (256)
Q Consensus       175 ~~lv~e~~~~~~l-----------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~  230 (256)
                      .++++||+.+++|           ++.....++.+++             +||||+||+++.++.+||+|||+++.....
T Consensus        95 ~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~~~  174 (291)
T 1u46_A           95 MKMVTELAPLGSLLDRLRKHQGHFLLGTLSRYAVQVAEGMGYLESKRFIHRDLAARNLLLATRDLVKIGDFGLMRALPQN  174 (291)
T ss_dssp             CEEEEECCTTCBHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEEEETTEEEECCCTTCEECCC-
T ss_pred             ceeeEecccCCCHHHHHHhccCCcCHHHHHHHHHHHHHHHHHHHhCCcccCCCchheEEEcCCCCEEEcccccccccccc
Confidence            8899999998664           4455555666655             599999999999999999999999987554


Q ss_pred             Ccee--eeeeeecccc----cccccCCCCCCC
Q 047066          231 ETQL--STMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       231 ~~~~--~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      ....  .....||+.|    .+.+..++.++|
T Consensus       175 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~D  206 (291)
T 1u46_A          175 DDHYVMQEHRKVPFAWCAPESLKTRTFSHASD  206 (291)
T ss_dssp             CCEEEC-----CCGGGCCHHHHHHCEEEHHHH
T ss_pred             ccchhhhccCCCCceeeCchhhcCCCCCchhh
Confidence            3322  2234577777    333444444443

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A*

Probab=99.83  E-value=1e-20  Score=159.87  Aligned_cols=151  Identities=21%  Similarity=0.237  Sum_probs=113.3

Q ss_pred             cCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC--------hhHHHHHHHHHHHHHhCCCCcccceeeEEEECC
Q 047066          103 TNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY--------QSQIEQCINKVVVLSQINHRNVVGLLGCCLETE  173 (256)
Q Consensus       103 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--------~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~  173 (256)
                      .++|.+.+.||+|+||.||+|... +++.||+|.+....        ......+.+|+.+++.++||||+++++++...+
T Consensus         9 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~   88 (322)
T 2ycf_A            9 RDEYIMSKTLGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFDAED   88 (322)
T ss_dssp             HHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECC---------------CHHHHHHHHHHCCCTTBCCEEEEEESSS
T ss_pred             hhceeEeeEEecCCCEEEEEEEEcCCCcEEEEEEeehhhhhhcccccchhhhhHHHHHHHHHhCCCCCCceEeeEEcCCc
Confidence            357999999999999999999975 58899999875432        122345789999999999999999999987655


Q ss_pred             EEEEEEecCCCCCC----------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCc---EEEEecCCceec
Q 047066          174 VPLLVNEFVKLPTI----------SWEVRIRIAAETA-------------EDIKSINILLDDNYT---TKVCDFGASKLV  227 (256)
Q Consensus       174 ~~~lv~e~~~~~~l----------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~---~ki~DFGla~~~  227 (256)
                       .+++|||+++++|          ++.....++.|++             +||||+|||++.++.   +||+|||+++..
T Consensus        89 -~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~NIl~~~~~~~~~~kl~Dfg~~~~~  167 (322)
T 2ycf_A           89 -YYIVLELMEGGELFDKVVGNKRLKEATCKLYFYQMLLAVQYLHENGIIHRDLKPENVLLSSQEEDCLIKITDFGHSKIL  167 (322)
T ss_dssp             -EEEEEECCTTEETHHHHSTTCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEESSSSSSCCEEECCCTTCEEC
T ss_pred             -eEEEEecCCCCcHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHEEEecCCCCCeEEEccCccceec
Confidence             8999999988554          5555556666655             699999999987654   999999999986


Q ss_pred             CCCCceeeeeeeecccc---cc----cccCCCCCCC
Q 047066          228 PIDETQLSTMVQGTLGY---YL----HTSQGTLNKE  256 (256)
Q Consensus       228 ~~~~~~~~~~~~Gt~~y---~~----~~~~~t~ksD  256 (256)
                      ....  ......||+.|   +.    ....++.++|
T Consensus       168 ~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~~~~D  201 (322)
T 2ycf_A          168 GETS--LMRTLCGTPTYLAPEVLVSVGTAGYNRAVD  201 (322)
T ss_dssp             CCCH--HHHHHHSCCTTCCHHHHHHTTTTTCTTHHH
T ss_pred             cccc--ccccccCCcCccCchhhccCCCCCCCchhh
Confidence            5332  12234588888   22    2455666665

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*

Probab=99.83  E-value=6.9e-21  Score=160.19  Aligned_cols=151  Identities=21%  Similarity=0.265  Sum_probs=113.5

Q ss_pred             ccChHHHHhhcCCCcccceeeeeCceEEEEEEECCCcEEEEEEeccc--ChhHHHHHHHHHHHHHhCC--CCcccceeeE
Q 047066           93 IFTAGELKIATNNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIV--YQSQIEQCINKVVVLSQIN--HRNVVGLLGC  168 (256)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~--h~niv~l~~~  168 (256)
                      .+....+.+..++|++.+.||+|+||.||++...+++.||+|.+...  .....+.+.+|+.++.+++  ||||++++++
T Consensus        17 ~~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~   96 (313)
T 3cek_A           17 NLYFQSMSVKGRIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDY   96 (313)
T ss_dssp             ---CCEEEETTEEEEEEEEEECCSSEEEEEEECTTCCEEEEEEEECSSCCHHHHHHHHHHHHHHHHHGGGCTTBCCEEEE
T ss_pred             CCCeeeeeeccceEEEEEEecCCCCEEEEEEEcCCCcEEEEEEeccccccccchHHHHHHHHHHHhccccCCceEEEEEE
Confidence            34444556667789999999999999999999888999999988643  3455678999999999996  5999999999


Q ss_pred             EEECCEEEEEEecCCC---------CCCCHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCcee
Q 047066          169 CLETEVPLLVNEFVKL---------PTISWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKL  226 (256)
Q Consensus       169 ~~~~~~~~lv~e~~~~---------~~l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~  226 (256)
                      +...+..+++||+..+         +.+++.....++.+++             +||||+|||+++ +.+||+|||+++.
T Consensus        97 ~~~~~~~~lv~e~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~dlkp~NIl~~~-~~~kL~Dfg~~~~  175 (313)
T 3cek_A           97 EITDQYIYMVMECGNIDLNSWLKKKKSIDPWERKSYWKNMLEAVHTIHQHGIVHSDLKPANFLIVD-GMLKLIDFGIANQ  175 (313)
T ss_dssp             EECSSEEEEEECCCSEEHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEEET-TEEEECCCSSSCC
T ss_pred             eecCCEEEEEEecCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCceecCCCcccEEEEC-CeEEEeecccccc
Confidence            9999999999995432         4466666777777666             599999999975 8999999999987


Q ss_pred             cCCCCce-eeeeeeecccc
Q 047066          227 VPIDETQ-LSTMVQGTLGY  244 (256)
Q Consensus       227 ~~~~~~~-~~~~~~Gt~~y  244 (256)
                      ....... ......||+.|
T Consensus       176 ~~~~~~~~~~~~~~gt~~y  194 (313)
T 3cek_A          176 MQPDTTSVVKDSQVGTVNY  194 (313)
T ss_dssp             --------------CCGGG
T ss_pred             ccCccccccccCCCCCCCc
Confidence            7543322 12344689999

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens}

Probab=99.83  E-value=1.3e-20  Score=158.57  Aligned_cols=158  Identities=20%  Similarity=0.282  Sum_probs=103.9

Q ss_pred             HHHHhhcCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC-hhHH-HHHHHHHHHHHhCCCCcccceeeEEEECC
Q 047066           97 GELKIATNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY-QSQI-EQCINKVVVLSQINHRNVVGLLGCCLETE  173 (256)
Q Consensus        97 ~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~-~~~~-~~~~~E~~~l~~l~h~niv~l~~~~~~~~  173 (256)
                      ..+....++|++.+.||+|+||.||+|... +++.||+|.+.... .... +.+..+..+++.++||||+++++++...+
T Consensus        18 ~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~   97 (318)
T 2dyl_A           18 QRYQAEINDLENLGEMGSGTCGQVWKMRFRKTGHVIAVKQMRRSGNKEENKRILMDLDVVLKSHDCPYIVQCFGTFITNT   97 (318)
T ss_dssp             SEEECCGGGEEEEEEC------CEEEEEETTTCCEEEEEEEETTSCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSS
T ss_pred             hhhhhhhccccccceeeecCCeeEEEEEEecCCeEEEEEEecccccchHHHHHHHHHHHHHHhcCCCceeeEEEEEecCC
Confidence            334445578999999999999999999975 68999999986543 2222 33444555678889999999999999999


Q ss_pred             EEEEEEecCCC----------CCCCHHHHHHHHHHHH--------------hccCCCcEEEcCCCcEEEEecCCceecCC
Q 047066          174 VPLLVNEFVKL----------PTISWEVRIRIAAETA--------------EDIKSINILLDDNYTTKVCDFGASKLVPI  229 (256)
Q Consensus       174 ~~~lv~e~~~~----------~~l~~~~~~~~~~~i~--------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~  229 (256)
                      ..+++|||+..          +.+++.....++.+++              +||||+||+++.++.+||+|||++.....
T Consensus        98 ~~~lv~e~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~  177 (318)
T 2dyl_A           98 DVFIAMELMGTCAEKLKKRMQGPIPERILGKMTVAIVKALYYLKEKHGVIHRDVKPSNILLDERGQIKLCDFGISGRLVD  177 (318)
T ss_dssp             EEEEEECCCSEEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCGGGEEECTTSCEEECCCTTC-----
T ss_pred             cEEEEEeccCCcHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHhhCCEEeCCCCHHHEEECCCCCEEEEECCCchhccC
Confidence            99999999943          4466666555555544              69999999999999999999999987644


Q ss_pred             CCceeeeeeeecccc----cc-----cccCCCCCCC
Q 047066          230 DETQLSTMVQGTLGY----YL-----HTSQGTLNKE  256 (256)
Q Consensus       230 ~~~~~~~~~~Gt~~y----~~-----~~~~~t~ksD  256 (256)
                      ...  .....||+.|    .+     ....++.++|
T Consensus       178 ~~~--~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~D  211 (318)
T 2dyl_A          178 DKA--KDRSAGCAAYMAPERIDPPDPTKPDYDIRAD  211 (318)
T ss_dssp             -----------CCTTCCHHHHC--------CCTHHH
T ss_pred             Ccc--ccccCCCccccChhhcccccccccCCccccc
Confidence            322  2334689988    22     2445666655

>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}

Probab=99.83  E-value=3.3e-21  Score=164.95  Aligned_cols=148  Identities=11%  Similarity=0.144  Sum_probs=115.5

Q ss_pred             cCCCcccceeeeeCceEEEEEEECC---------CcEEEEEEecccChhHHHHHHHHHHHHHhCCCCcccc---------
Q 047066          103 TNNYAYDRMIGRGGYGTVFLGSLSD---------NKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVG---------  164 (256)
Q Consensus       103 ~~~~~~~~~lg~G~~g~V~~~~~~~---------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~---------  164 (256)
                      .++|.+.+.||+|+||.||+|....         ++.||+|.+...     +.+.+|+.+++.++||||++         
T Consensus        41 ~~~y~~~~~lg~G~~g~Vy~~~~~~t~~~~~~~~~~~vavK~~~~~-----~~~~~E~~~l~~l~h~niv~~~~~~~~~~  115 (352)
T 2jii_A           41 GRQWKLKSFQTRDNQGILYEAAPTSTLTCDSGPQKQKFSLKLDAKD-----GRLFNEQNFFQRAAKPLQVNKWKKLYSTP  115 (352)
T ss_dssp             SCEEEEEEEEEEETTEEEEEEEECC-----------CEEEEEEETT-----STHHHHHHHHHHHCCHHHHHHHHHHTTCT
T ss_pred             CCeEEEEEEecCCCCeEEEEEeecCCccccccccCceEEEEEeccc-----chHHHHHHHHHHhcccchhhhhhhhccCC
Confidence            4689999999999999999999753         789999988643     35778999999999999987         


Q ss_pred             ------eeeEEEE-CCEEEEEEecCCC------------CCCCHHHHHHHHHHHH-------------hccCCCcEEEcC
Q 047066          165 ------LLGCCLE-TEVPLLVNEFVKL------------PTISWEVRIRIAAETA-------------EDIKSINILLDD  212 (256)
Q Consensus       165 ------l~~~~~~-~~~~~lv~e~~~~------------~~l~~~~~~~~~~~i~-------------rdlk~~NiLi~~  212 (256)
                            +++++.. .+..++||||+ +            +.+++.....++.|++             +||||+|||++.
T Consensus       116 ~~~i~~~~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~~L~~LH~~~ivH~Dikp~NIl~~~  194 (352)
T 2jii_A          116 LLAIPTCMGFGVHQDKYRFLVLPSL-GRSLQSALDVSPKHVLSERSVLQVACRLLDALEFLHENEYVHGNVTAENIFVDP  194 (352)
T ss_dssp             TCSCCCCCEEEEETTTEEEEEEECC-CEEHHHHHHHSGGGCCCHHHHHHHHHHHHHHHHHHHHTTCBCSCCCGGGEEEET
T ss_pred             ccCccchhhccccCCcEEEEEecCC-CcCHHHHHHhCCcCCCCHHHHHHHHHHHHHHHHHHHhCCccCCCCCHHHEEEcC
Confidence                  6777776 78899999999 5            3466777777777766             599999999999


Q ss_pred             CC--cEEEEecCCceecCCCCce------eeeeeeecccc----cccccCCCCCCC
Q 047066          213 NY--TTKVCDFGASKLVPIDETQ------LSTMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       213 ~~--~~ki~DFGla~~~~~~~~~------~~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      ++  .+||+|||+++.+......      ......||+.|    .+.+..++.++|
T Consensus       195 ~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~D  250 (352)
T 2jii_A          195 EDQSQVTLAGYGFAFRYCPSGKHVAYVEGSRSPHEGDLEFISMDLHKGCGPSRRSD  250 (352)
T ss_dssp             TEEEEEEECCGGGCBCSSGGGCCCCCCTTSSCTTCSCTTTCCHHHHTTCCCCHHHH
T ss_pred             CCCceEEEecCcceeeccCCCccccccccccccccCCccccCHHHHccCCCCchhh
Confidence            98  9999999999876532211      11233689999    455556676665

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.83  E-value=2.2e-21  Score=176.04  Aligned_cols=145  Identities=16%  Similarity=0.048  Sum_probs=94.7

Q ss_pred             eeeeeCceEEEEEE-ECCCcEEEEEEeccc----------ChhHHHHHHHHHHHHHhC-CCCcccceeeEEEECCEEEEE
Q 047066          111 MIGRGGYGTVFLGS-LSDNKAIAIKKSRIV----------YQSQIEQCINKVVVLSQI-NHRNVVGLLGCCLETEVPLLV  178 (256)
Q Consensus       111 ~lg~G~~g~V~~~~-~~~~~~vavK~~~~~----------~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~lv  178 (256)
                      ..+.|+.|....++ ...|+.+++|.+...          .+...+++.+|+++|+++ +|+||+++++++.+.+..|||
T Consensus       241 ~~~~~~~~~h~~~rr~~fg~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~~~~~~ed~~~~yLV  320 (569)
T 4azs_A          241 QPYAGAGLAHKRSRRYFFGEDYVCKFFYYDMPHGILTAEESQRNKYELHNEIKFLTQPPAGFDAPAVLAHGENAQSGWLV  320 (569)
T ss_dssp             C-C--------CCEEEEECSSEEEEEEESSCSTTCSCHHHHHHHHHHHHHHHHHHHSCCTTCCCCCEEEEEECSSEEEEE
T ss_pred             ccccCCcccccccccccccceeEEEEEecccccccchhhhhHHHHHHHHHHHHHHHhcCCCCCeeEEEEEEEECCEEEEE
Confidence            34455555555444 235788999987432          123346799999999999 799999999999999999999


Q ss_pred             EecCCCCCCCHHHH-------HHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceeeeee
Q 047066          179 NEFVKLPTISWEVR-------IRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMV  238 (256)
Q Consensus       179 ~e~~~~~~l~~~~~-------~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~~~  238 (256)
                      |||++|++|.....       ..++.||+             |||||+|||+++++.+||+|||+|+....+... .+..
T Consensus       321 MEyv~G~~L~d~i~~~~~l~~~~I~~QIl~AL~ylH~~GIIHRDIKPeNILL~~dg~vKL~DFGlAr~~~~~~~~-~~t~  399 (569)
T 4azs_A          321 MEKLPGRLLSDMLAAGEEIDREKILGSLLRSLAALEKQGFWHDDVRPWNVMVDARQHARLIDFGSIVTTPQDCSW-PTNL  399 (569)
T ss_dssp             EECCCSEEHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTCEESCCCGGGEEECTTSCEEECCCTTEESCC---CC-SHHH
T ss_pred             EecCCCCcHHHHHHhCCCCCHHHHHHHHHHHHHHHHHCCceeccCchHhEEECCCCCEEEeecccCeeCCCCCcc-ccCc
Confidence            99999976632221       23444443             899999999999999999999999987544332 3345


Q ss_pred             eecccc---cccccCCCCCCC
Q 047066          239 QGTLGY---YLHTSQGTLNKE  256 (256)
Q Consensus       239 ~Gt~~y---~~~~~~~t~ksD  256 (256)
                      +||++|   ++..+++..++|
T Consensus       400 vGTp~YmAPE~l~g~~~~~~d  420 (569)
T 4azs_A          400 VQSFFVFVNELFAENKSWNGF  420 (569)
T ss_dssp             HHHHHHHHHHHC---------
T ss_pred             eechhhccHHHhCCCCCCccc
Confidence            799999   444555544443

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A*

Probab=99.83  E-value=9.8e-21  Score=155.54  Aligned_cols=137  Identities=14%  Similarity=0.248  Sum_probs=112.6

Q ss_pred             hhcCCCcccceeeeeCceEEEEEEECCCcEEEEEEecccC--hhHHHHHHHHHHHHHhCCCCcccceeeEEEEC--CEEE
Q 047066          101 IATNNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVY--QSQIEQCINKVVVLSQINHRNVVGLLGCCLET--EVPL  176 (256)
Q Consensus       101 ~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~--~~~~  176 (256)
                      +..++|++.+.||+|+||.||+|.+ ++..+|+|.+....  ....+.+.+|+.+++.++||||+++++++...  +..+
T Consensus         7 i~~~~y~~~~~lg~G~~g~V~~~~~-~~~~~avK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~   85 (271)
T 3kmu_A            7 IDFKQLNFLTKLNENHSGELWKGRW-QGNDIVVKVLKVRDWSTRKSRDFNEECPRLRIFSHPNVLPVLGACQSPPAPHPT   85 (271)
T ss_dssp             CCGGGCEEEEEEEEETTEEEEEEEE-TTEEEEEEEECCTTCCHHHHHHHHHHGGGGCCCSCTTEECEEEEECTTTSSSCE
T ss_pred             CCHHHhHHHHHhcCCCcceEEEEEE-CCeeEEEEEecccccCHHHHHHHHHHHHHHHhcCCCchhheEEEEccCCCCCeE
Confidence            3456899999999999999999998 48899999886543  44557899999999999999999999999876  7789


Q ss_pred             EEEecCCCCC------------CCHHHHHHHHHHHH---------------hccCCCcEEEcCCCcEEEEecCCceecCC
Q 047066          177 LVNEFVKLPT------------ISWEVRIRIAAETA---------------EDIKSINILLDDNYTTKVCDFGASKLVPI  229 (256)
Q Consensus       177 lv~e~~~~~~------------l~~~~~~~~~~~i~---------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~  229 (256)
                      ++|||+++++            +++.....++.|++               +||||+|||++.++.++|+|||++.....
T Consensus        86 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~~~i~H~dikp~Nil~~~~~~~~l~~~~~~~~~~~  165 (271)
T 3kmu_A           86 LITHWMPYGSLYNVLHEGTNFVVDQSQAVKFALDMARGMAFLHTLEPLIPRHALNSRSVMIDEDMTARISMADVKFSFQS  165 (271)
T ss_dssp             EEEECCTTCBHHHHHHSCSSCCCCHHHHHHHHHHHHHHHHHHTTSSSCCTTCCCSGGGEEECTTSCEEEEGGGSCCTTSC
T ss_pred             eeecccCCCcHHHHHhhcccCCCCHHHHHHHHHHHHHHHHHHhcCCCceecCCCccceEEEcCCcceeEEeccceeeecc
Confidence            9999998754            46666666666655               59999999999999999999998765432


Q ss_pred             CCceeeeeeeecccc
Q 047066          230 DETQLSTMVQGTLGY  244 (256)
Q Consensus       230 ~~~~~~~~~~Gt~~y  244 (256)
                      .      ...||+.|
T Consensus       166 ~------~~~~t~~y  174 (271)
T 3kmu_A          166 P------GRMYAPAW  174 (271)
T ss_dssp             T------TCBSCGGG
T ss_pred             c------CccCCccc
Confidence            2      23488888

>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*

Probab=99.83  E-value=3.8e-20  Score=160.15  Aligned_cols=151  Identities=24%  Similarity=0.255  Sum_probs=118.6

Q ss_pred             hhcCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccChhHHHHHHHHHHHHHhCC-CC-----cccceeeEEEECC
Q 047066          101 IATNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVYQSQIEQCINKVVVLSQIN-HR-----NVVGLLGCCLETE  173 (256)
Q Consensus       101 ~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-h~-----niv~l~~~~~~~~  173 (256)
                      ...++|++.+.||+|+||.||+|... +++.||+|.+... ....+.+..|+.+++.++ |+     +++++.+++...+
T Consensus        51 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~e~~~l~~l~~~~~~~~~~iv~~~~~~~~~~  129 (382)
T 2vx3_A           51 KWMDRYEIDSLIGKGSFGQVVKAYDRVEQEWVAIKIIKNK-KAFLNQAQIEVRLLELMNKHDTEMKYYIVHLKRHFMFRN  129 (382)
T ss_dssp             EETTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSS-HHHHHHHHHHHHHHHHHHHCSSGGGGGBCCEEEEEEETT
T ss_pred             EeeeeEEEEEEEeecCCEEEEEEEEcCCCcEEEEEEEecc-HHHHHHHHHHHHHHHHHHhcccccceeEEEeeeeeccCC
Confidence            34578999999999999999999975 6889999998643 334567788999988884 55     4999999999999


Q ss_pred             EEEEEEecCCC-----------CCCCHHHHHHHHHHHH---------------hccCCCcEEEc--CCCcEEEEecCCce
Q 047066          174 VPLLVNEFVKL-----------PTISWEVRIRIAAETA---------------EDIKSINILLD--DNYTTKVCDFGASK  225 (256)
Q Consensus       174 ~~~lv~e~~~~-----------~~l~~~~~~~~~~~i~---------------rdlk~~NiLi~--~~~~~ki~DFGla~  225 (256)
                      ..++||||+.+           +.+++.....++.|++               |||||+|||++  .++.+||+|||+|+
T Consensus       130 ~~~lv~e~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~al~~lH~~~~~ivHrDlkp~NIll~~~~~~~~kL~DFG~a~  209 (382)
T 2vx3_A          130 HLCLVFEMLSYNLYDLLRNTNFRGVSLNLTRKFAQQMCTALLFLATPELSIIHCDLKPENILLCNPKRSAIKIVDFGSSC  209 (382)
T ss_dssp             EEEEEEECCCCBHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHTSTTTCEECCCCSGGGEEESSTTSCCEEECCCTTCE
T ss_pred             ceEEEEecCCCCHHHHHhhcCcCCCCHHHHHHHHHHHHHHHHHhccCCCCEEcCCCCcccEEEecCCCCcEEEEeccCce
Confidence            99999999975           2356666666666554               69999999994  57789999999999


Q ss_pred             ecCCCCceeeeeeeecccc----cccccCCCCCCC
Q 047066          226 LVPIDETQLSTMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       226 ~~~~~~~~~~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      ......    ....||+.|    .+.+..++.++|
T Consensus       210 ~~~~~~----~~~~~t~~y~aPE~~~~~~~~~~~D  240 (382)
T 2vx3_A          210 QLGQRI----YQYIQSRFYRSPEVLLGMPYDLAID  240 (382)
T ss_dssp             ETTCCC----CSSCSCGGGCCHHHHTTCCCCTHHH
T ss_pred             eccccc----ccccCCccccChHHHcCCCCCcHHH
Confidence            875432    234689999    555667777766

>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*

Probab=99.83  E-value=1.2e-20  Score=163.27  Aligned_cols=149  Identities=24%  Similarity=0.244  Sum_probs=118.0

Q ss_pred             cCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccChhHHHHHHHHHHHHHhCC--------CCcccceeeEEE---
Q 047066          103 TNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVYQSQIEQCINKVVVLSQIN--------HRNVVGLLGCCL---  170 (256)
Q Consensus       103 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~--------h~niv~l~~~~~---  170 (256)
                      .++|++.+.||+|+||.||+|... +++.||+|.+... ....+.+.+|+.+++.++        |+||+++++++.   
T Consensus        36 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~-~~~~~~~~~E~~~l~~l~~~~~~~~~~~~iv~~~~~~~~~~  114 (397)
T 1wak_A           36 NGRYHVIRKLGWGHFSTVWLSWDIQGKKFVAMKVVKSA-EHYTETALDEIRLLKSVRNSDPNDPNREMVVQLLDDFKISG  114 (397)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSC-HHHHHHHHHHHHHHHHHHHSCTTCGGGGGBCCEEEEEEEEE
T ss_pred             CCeEEEEEEeeecCCeeEEEEEecCCCeEEEEEEEecC-CcchHHHHHHHHHHHHHhhcCCCCCCcceeeeeecceeecC
Confidence            478999999999999999999865 6889999998643 344577899999999885        888999999988   


Q ss_pred             -ECCEEEEEEecCCC-----------CCCCHHHHHHHHHHHH--------------hccCCCcEEEcCCC----------
Q 047066          171 -ETEVPLLVNEFVKL-----------PTISWEVRIRIAAETA--------------EDIKSINILLDDNY----------  214 (256)
Q Consensus       171 -~~~~~~lv~e~~~~-----------~~l~~~~~~~~~~~i~--------------rdlk~~NiLi~~~~----------  214 (256)
                       .....++||||+.+           +.+++.....++.|++              |||||+|||++.++          
T Consensus       115 ~~~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~lH~~~givHrDikp~NIll~~~~~~~~~~~~~~  194 (397)
T 1wak_A          115 VNGTHICMVFEVLGHHLLKWIIKSNYQGLPLPCVKKIIQQVLQGLDYLHTKCRIIHTDIKPENILLSVNEQYIRRLAAEA  194 (397)
T ss_dssp             TTEEEEEEEECCCCCBHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHTTCEECCCCSGGGEEECCCHHHHHHHHHHH
T ss_pred             CCCceEEEEEeccCccHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHeeEeccchhhhhhhhhh
Confidence             45679999999965           2356666666666554              69999999999775          


Q ss_pred             ---------------------------------------cEEEEecCCceecCCCCceeeeeeeecccc----cccccCC
Q 047066          215 ---------------------------------------TTKVCDFGASKLVPIDETQLSTMVQGTLGY----YLHTSQG  251 (256)
Q Consensus       215 ---------------------------------------~~ki~DFGla~~~~~~~~~~~~~~~Gt~~y----~~~~~~~  251 (256)
                                                             .+||+|||+|+.....    .+...||+.|    .+.+..+
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~DfG~a~~~~~~----~~~~~gt~~y~aPE~~~~~~~  270 (397)
T 1wak_A          195 TEWQRSGAPPPSGSAVSTAPATAGNFLVNPLEPKNAEKLKVKIADLGNACWVHKH----FTEDIQTRQYRSLEVLIGSGY  270 (397)
T ss_dssp             C---------------------CCTTSCCTTSGGGGGGCCEEECCGGGCEETTBC----SCSCCSCGGGCCHHHHHTSCC
T ss_pred             HHHhhcCCCCCCCCccccCCcccccccccccccccccccceEecccccccccccc----CccCCCCCcccCChhhcCCCC
Confidence                                                   7999999999876533    2234699999    5556667


Q ss_pred             CCCCC
Q 047066          252 TLNKE  256 (256)
Q Consensus       252 t~ksD  256 (256)
                      +.++|
T Consensus       271 ~~~~D  275 (397)
T 1wak_A          271 NTPAD  275 (397)
T ss_dssp             CTHHH
T ss_pred             CcHHH
Confidence            77765

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens}

Probab=99.83  E-value=4.2e-21  Score=168.88  Aligned_cols=155  Identities=20%  Similarity=0.290  Sum_probs=107.4

Q ss_pred             HHhhcCCCcccceeeeeCceEEEEEEECCCcEEEEEEecccChhHHHHHHHHHHHHHhC-CCCcccceeeEEEECCEEEE
Q 047066           99 LKIATNNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQI-NHRNVVGLLGCCLETEVPLL  177 (256)
Q Consensus        99 ~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~l  177 (256)
                      +.+...+|...+.||+|+||+|+.....+++.||||++.....   +.+.+|+.+++.+ +||||+++++++.+.+..++
T Consensus        19 ~~i~~~~y~~~~~LG~G~~G~V~~~~~~~~~~vAvK~~~~~~~---~~~~~E~~~l~~l~~HpnIv~l~~~~~~~~~~~l   95 (432)
T 3p23_A           19 VIVGKISFCPKDVLGHGAEGTIVYRGMFDNRDVAVKRILPECF---SFADREVQLLRESDEHPNVIRYFCTEKDRQFQYI   95 (432)
T ss_dssp             EEETTEEEEEEEEEEECGGGCEEEEEESSSSEEEEEEECTTTE---EECHHHHHHHHHSCCCTTBCCEEEEEEETTEEEE
T ss_pred             EEEccEEEecCCeeecCcCEEEEEEEEeCCeEEEEEEECHHHH---HHHHHHHHHHHhccCCCCcCeEEEEEecCCEEEE
Confidence            3445567999999999999997765556899999998865332   2356799999999 89999999999999999999


Q ss_pred             EEecCCCC----------CCCHHHHHHHHHHHH-------------hccCCCcEEEcC-----CCcEEEEecCCceecCC
Q 047066          178 VNEFVKLP----------TISWEVRIRIAAETA-------------EDIKSINILLDD-----NYTTKVCDFGASKLVPI  229 (256)
Q Consensus       178 v~e~~~~~----------~l~~~~~~~~~~~i~-------------rdlk~~NiLi~~-----~~~~ki~DFGla~~~~~  229 (256)
                      +|||+.+.          .+.......++.|++             |||||+|||++.     ...+||+|||+|+.+..
T Consensus        96 v~E~~~g~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlKp~NIll~~~~~~~~~~~kL~DFG~a~~~~~  175 (432)
T 3p23_A           96 AIELCAATLQEYVEQKDFAHLGLEPITLLQQTTSGLAHLHSLNIVHRDLKPHNILISMPNAHGKIKAMISDFGLCKKLAV  175 (432)
T ss_dssp             EEECCSEEHHHHHHSSSCCCCSSCHHHHHHHHHHHHHHHHHTTCCCCCCSTTSEEECCCBTTTBCCEEECCTTEEECC--
T ss_pred             EEECCCCCHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHCcCEeCCCCHHHEEEecCCCCCceeEEEecccceeeccC
Confidence            99999651          112112233444433             799999999953     33688999999998754


Q ss_pred             CCc--eeeeeeeecccc----ccc---ccCCCCCCC
Q 047066          230 DET--QLSTMVQGTLGY----YLH---TSQGTLNKE  256 (256)
Q Consensus       230 ~~~--~~~~~~~Gt~~y----~~~---~~~~t~ksD  256 (256)
                      ...  ......+||+.|    .+.   ...+|.++|
T Consensus       176 ~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~t~~~D  211 (432)
T 3p23_A          176 GRHSFSRRSGVPGTEGWIAPEMLSEDCKENPTYTVD  211 (432)
T ss_dssp             ----------CCSCTTSCCGGGTSCC---CCCTHHH
T ss_pred             CCcceeeccccCCCcCccChhhhhcccccCCCcHHH
Confidence            322  123345699999    232   345555555

>4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A

Probab=99.83  E-value=2.9e-20  Score=154.73  Aligned_cols=151  Identities=21%  Similarity=0.315  Sum_probs=113.7

Q ss_pred             cCCCcccceeeeeCceEEEEEEE-CCCcEEEEEEecccChhHHHHHHHHHHHHHhCCCCcccceeeEE-EECCEEEEEEe
Q 047066          103 TNNYAYDRMIGRGGYGTVFLGSL-SDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCC-LETEVPLLVNE  180 (256)
Q Consensus       103 ~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~-~~~~~~~lv~e  180 (256)
                      .++|++.+.||+|+||.||+|.. .+++.||+|......  ..+.+.+|+.+++.++|++++..+..+ ...+..+++||
T Consensus         8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~lv~e   85 (296)
T 4hgt_A            8 GNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKT--KHPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVME   85 (296)
T ss_dssp             ---CEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEC-----CCCHHHHHHHHHHHTTSTTCCCEEEEEEETTEEEEEEE
T ss_pred             CCceEEeeeecCCCCeEEEEEEEcCCCceEEEEeecccc--cchHHHHHHHHHHHhcCCCCCCeeeeecCCCCceEEEEE
Confidence            46899999999999999999997 478899999765432  124578899999999888877766655 56888999999


Q ss_pred             cCCCC-----------CCCHHHHHHHHHHHH-------------hccCCCcEEE---cCCCcEEEEecCCceecCCCCce
Q 047066          181 FVKLP-----------TISWEVRIRIAAETA-------------EDIKSINILL---DDNYTTKVCDFGASKLVPIDETQ  233 (256)
Q Consensus       181 ~~~~~-----------~l~~~~~~~~~~~i~-------------rdlk~~NiLi---~~~~~~ki~DFGla~~~~~~~~~  233 (256)
                      |+ ++           .+++.....++.|++             +||||+|||+   +.++.+||+|||+++........
T Consensus        86 ~~-~~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~ivH~Dlkp~NIl~~~~~~~~~~kL~Dfg~a~~~~~~~~~  164 (296)
T 4hgt_A           86 LL-GPSLEDLFNFCSRKFSLKTVLLLADQMISRIEYIHSKNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDARTH  164 (296)
T ss_dssp             CC-CCBHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECCGGGTTCEEECCCTTCEECBCTTTC
T ss_pred             cc-CCCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeeeeccCCCCeEEEecCccceeccCcccC
Confidence            99 43           356666777777765             5999999999   78899999999999987654331


Q ss_pred             ------eeeeeeecccc----cccccCCCCCCC
Q 047066          234 ------LSTMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       234 ------~~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                            ......||+.|    .+.+..++.++|
T Consensus       165 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~D  197 (296)
T 4hgt_A          165 QHIPYRENKNLTGTARYASINTHLGIEQSRRDD  197 (296)
T ss_dssp             CBCCCCCSCCCCSCGGGCCHHHHTTCCCCHHHH
T ss_pred             ccCCCCcccccCCCccccchHHhcCCCCCchhH
Confidence                  12345699999    455556666655

>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*

Probab=99.83  E-value=6.2e-20  Score=155.39  Aligned_cols=149  Identities=21%  Similarity=0.258  Sum_probs=118.2

Q ss_pred             cCCCcccceeeeeCceEEEEEEE-C-CCcEEEEEEecccChhHHHHHHHHHHHHHhCCCCc------ccceeeEEEECCE
Q 047066          103 TNNYAYDRMIGRGGYGTVFLGSL-S-DNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRN------VVGLLGCCLETEV  174 (256)
Q Consensus       103 ~~~~~~~~~lg~G~~g~V~~~~~-~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~n------iv~l~~~~~~~~~  174 (256)
                      .++|++.+.||+|+||.||+|.. . +++.||+|.++.. ....+.+.+|+.+++.++|++      ++++++++...+.
T Consensus        13 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~-~~~~~~~~~e~~~l~~l~~~~~~~~~~i~~~~~~~~~~~~   91 (339)
T 1z57_A           13 SARYEIVDTLGEGAFGKVVECIDHKAGGRHVAVKIVKNV-DRYCEAARSEIQVLEHLNTTDPNSTFRCVQMLEWFEHHGH   91 (339)
T ss_dssp             TTTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSS-HHHHHHHHHHHHHHHHHHHHCTTCTTCBCCEEEEEEETTE
T ss_pred             cCceEEEEEEecCCCeEEEEEEecCCCCcEEEEEEEecC-CchhHHHHHHHHHHHHhhhcCCCCceeeEeeecccccCCc
Confidence            46899999999999999999986 3 6889999988643 334577889999999887665      9999999999999


Q ss_pred             EEEEEecCCC-----------CCCCHHHHHHHHHHHH-------------hccCCCcEEEcC------------------
Q 047066          175 PLLVNEFVKL-----------PTISWEVRIRIAAETA-------------EDIKSINILLDD------------------  212 (256)
Q Consensus       175 ~~lv~e~~~~-----------~~l~~~~~~~~~~~i~-------------rdlk~~NiLi~~------------------  212 (256)
                      .+++|||+.+           ..++......++.|++             +||||+|||++.                  
T Consensus        92 ~~lv~e~~~~~l~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dlkp~Nil~~~~~~~~~~~~~~~~~~~~~  171 (339)
T 1z57_A           92 ICIVFELLGLSTYDFIKENGFLPFRLDHIRKMAYQICKSVNFLHSNKLTHTDLKPENILFVQSDYTEAYNPKIKRDERTL  171 (339)
T ss_dssp             EEEEEECCCCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESCCCEEEEEC----CEEEEE
T ss_pred             EEEEEcCCCCCHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHCCCcCCCCCHHHEEEeccccccccCCccccccccc
Confidence            9999999943           1355666666776666             599999999987                  


Q ss_pred             -CCcEEEEecCCceecCCCCceeeeeeeecccc----cccccCCCCCCC
Q 047066          213 -NYTTKVCDFGASKLVPIDETQLSTMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       213 -~~~~ki~DFGla~~~~~~~~~~~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                       ++.+||+|||+++......    ....||+.|    .+.+..++.++|
T Consensus       172 ~~~~~kl~Dfg~~~~~~~~~----~~~~gt~~y~aPE~~~~~~~~~~~D  216 (339)
T 1z57_A          172 INPDIKVVDFGSATYDDEHH----STLVSTRHYRAPEVILALGWSQPCD  216 (339)
T ss_dssp             SCCCEEECCCSSCEETTSCC----CSSCSCGGGCCHHHHTTSCCCTHHH
T ss_pred             cCCCceEeeCcccccCcccc----ccccCCccccChHHhhCCCCCcchh
Confidence             6689999999998754322    234689999    455666777765

>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A

Probab=99.82  E-value=6.3e-20  Score=152.78  Aligned_cols=151  Identities=21%  Similarity=0.315  Sum_probs=116.7

Q ss_pred             cCCCcccceeeeeCceEEEEEEE-CCCcEEEEEEecccChhHHHHHHHHHHHHHhCCCCcccceeeEE-EECCEEEEEEe
Q 047066          103 TNNYAYDRMIGRGGYGTVFLGSL-SDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCC-LETEVPLLVNE  180 (256)
Q Consensus       103 ~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~-~~~~~~~lv~e  180 (256)
                      .++|++.+.||+|+||.||+|.. .+++.||+|.+.....  .+.+.+|+.+++.++|++++..+..+ ...+..+++||
T Consensus         8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~lv~e   85 (296)
T 3uzp_A            8 GNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTK--HPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVME   85 (296)
T ss_dssp             TTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEEESCSS--CCHHHHHHHHHHHHTTSTTCCCEEEEEEETTEEEEEEE
T ss_pred             ccEEEEEEEEccCCCeEEEEEEEcCCCcEEEEEEecCCcc--hhHHHHHHHHHHHhhcCCCCCccccccCCCCceEEEEE
Confidence            46899999999999999999997 4789999998764432  24578999999999888877666655 56788999999


Q ss_pred             cCCCC-----------CCCHHHHHHHHHHHH-------------hccCCCcEEE---cCCCcEEEEecCCceecCCCCce
Q 047066          181 FVKLP-----------TISWEVRIRIAAETA-------------EDIKSINILL---DDNYTTKVCDFGASKLVPIDETQ  233 (256)
Q Consensus       181 ~~~~~-----------~l~~~~~~~~~~~i~-------------rdlk~~NiLi---~~~~~~ki~DFGla~~~~~~~~~  233 (256)
                      |+ ++           .+++.....++.|++             +||||+|||+   +.++.+||+|||+++........
T Consensus        86 ~~-~~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~dlkp~NIl~~~~~~~~~~kl~Dfg~~~~~~~~~~~  164 (296)
T 3uzp_A           86 LL-GPSLEDLFNFCSRKFSLKTVLLLADQMISRIEYIHSKNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDARTH  164 (296)
T ss_dssp             CC-CCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECCGGGTTCEEECCCTTCEECBCTTTC
T ss_pred             ec-CCCHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHhCCeeeCCCCHHHeEEecCCCCCeEEEeeCCCcccccccccc
Confidence            99 43           356666677777766             5999999999   48889999999999987654331


Q ss_pred             ------eeeeeeecccc----cccccCCCCCCC
Q 047066          234 ------LSTMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       234 ------~~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                            ......||+.|    .+.+..++.++|
T Consensus       165 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~D  197 (296)
T 3uzp_A          165 QHIPYRENKNLTGTARYASINTHLGIEQSRRDD  197 (296)
T ss_dssp             CBCCCCCSCCCCSCTTTCCHHHHTTCCCCHHHH
T ss_pred             cccccccccccccccccCChhhhcCCCCCcchh
Confidence                  12345699999    555556676665

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A*

Probab=99.82  E-value=2.6e-20  Score=163.96  Aligned_cols=137  Identities=21%  Similarity=0.322  Sum_probs=100.0

Q ss_pred             CCCcccceeeeeCceEEEEEEECCCcEEEEEEecccChhHHHHHHHHHHHHHhC-CCCcccceeeEEEECCEEEEEEecC
Q 047066          104 NNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQI-NHRNVVGLLGCCLETEVPLLVNEFV  182 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~lv~e~~  182 (256)
                      +.|...+.||+|+||+||.+...+++.||||.+...   ..+.+.+|+.++.++ +||||+++++++.+.+..+++|||+
T Consensus        15 ~~~~~~~~LG~G~~g~V~~~~~~~g~~vAvK~~~~~---~~~~~~~E~~~l~~l~~HpnIv~~~~~~~~~~~~~lv~E~~   91 (434)
T 2rio_A           15 NLVVSEKILGYGSSGTVVFQGSFQGRPVAVKRMLID---FCDIALMEIKLLTESDDHPNVIRYYCSETTDRFLYIALELC   91 (434)
T ss_dssp             SCEEEEEEEEECSTTCEEEEEESSSSEEEEEEEEGG---GHHHHHHHHHHHHHHTTSTTBCCEEEEEECSSEEEEEECCC
T ss_pred             heeeccCeEeeCCCeEEEEEEEECCeEEEEEEEcHH---HHHHHHHHHHHHHhccCCCCcCeEEEEEecCCeEEEEEecC
Confidence            345566899999999998776668999999987643   235678899999887 8999999999999999999999999


Q ss_pred             CCCCCCHH-----------------HHHHHHHHHH-------------hccCCCcEEEcCC-------------CcEEEE
Q 047066          183 KLPTISWE-----------------VRIRIAAETA-------------EDIKSINILLDDN-------------YTTKVC  219 (256)
Q Consensus       183 ~~~~l~~~-----------------~~~~~~~~i~-------------rdlk~~NiLi~~~-------------~~~ki~  219 (256)
                      .+ +|...                 ....++.|++             |||||+|||++.+             +.+||+
T Consensus        92 ~g-sL~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDLkp~NILl~~~~~~~~~~~~~~~~~~~kL~  170 (434)
T 2rio_A           92 NL-NLQDLVESKNVSDENLKLQKEYNPISLLRQIASGVAHLHSLKIIHRDLKPQNILVSTSSRFTADQQTGAENLRILIS  170 (434)
T ss_dssp             SE-EHHHHHHTC------------CCHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEECCHHHHSCCTTCCCSCEEEEC
T ss_pred             CC-CHHHHHhccCCCchhhhhccchhHHHHHHHHHHHHHHHHHCCccccCCChHhEEEecCcccccccccCCCceEEEEc
Confidence            64 43111                 1123455544             6999999999754             489999


Q ss_pred             ecCCceecCCCCcee---eeeeeecccc
Q 047066          220 DFGASKLVPIDETQL---STMVQGTLGY  244 (256)
Q Consensus       220 DFGla~~~~~~~~~~---~~~~~Gt~~y  244 (256)
                      |||+|+.+.......   .....||+.|
T Consensus       171 DFG~a~~~~~~~~~~~~~~~~~~gt~~y  198 (434)
T 2rio_A          171 DFGLCKKLDSGQSSFRTNLNNPSGTSGW  198 (434)
T ss_dssp             CCTTCEECCC--------------CCTT
T ss_pred             ccccceecCCCCccceeeecCCCCCCCc
Confidence            999999876543221   2345799999

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*

Probab=99.82  E-value=1.5e-20  Score=161.97  Aligned_cols=149  Identities=12%  Similarity=0.044  Sum_probs=99.5

Q ss_pred             cCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC---hhHHHHHHHHHHHHHhC--CCCccccee-------eEE
Q 047066          103 TNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY---QSQIEQCINKVVVLSQI--NHRNVVGLL-------GCC  169 (256)
Q Consensus       103 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l--~h~niv~l~-------~~~  169 (256)
                      ...|.+.+.||+|+||.||+|.+. +++.||+|.+....   ....+.+.+|+.++..+  +||||++++       +++
T Consensus        61 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~~~~l~~~hp~iv~~~~~~~~p~d~~  140 (371)
T 3q60_A           61 ERKLKLVEPLRVGDRSVVFLVRDVERLEDFALKVFTMGAENSRSELERLHEATFAAARLLGESPEEARDRRRLLLPSDAV  140 (371)
T ss_dssp             EEEEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECCSTTHHHHHHHHHHHHHHHHHHHC----------CBCCCCEEE
T ss_pred             ceeeeeeeeccCCCCEEEEEEEECCCCceeEEEEEEecccccccHHHHHHHHHHHHHHhcccChhhhhhceeEEeeehhe
Confidence            456899999999999999999975 78999999987643   23446677885544444  699977754       555


Q ss_pred             EEC-----------------CEEEEEEecCCCCCCCHHH-----------H------HHHHHHHH-------------hc
Q 047066          170 LET-----------------EVPLLVNEFVKLPTISWEV-----------R------IRIAAETA-------------ED  202 (256)
Q Consensus       170 ~~~-----------------~~~~lv~e~~~~~~l~~~~-----------~------~~~~~~i~-------------rd  202 (256)
                      ...                 +..++||||++ ++|....           +      ..++.|++             ||
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~~~~~~~~~~~~~vk~~i~~qi~~aL~~LH~~~ivHrD  219 (371)
T 3q60_A          141 AVQSQPPFAQLSPGQDDYAVANYLLLMPAAS-VDLELLFSTLDFVYVFRGDEGILALHILTAQLIRLAANLQSKGLVHGH  219 (371)
T ss_dssp             EETTSCSSSBCSCC---CCEEEEEEEECCCS-EEHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHHHHHTTEEETT
T ss_pred             ecCCCCCeeeccCCcccceeeeEEEEecCCC-CCHHHHHHHhccccchhhhhhhhhHHHHHHHHHHHHHHHHHCCCccCc
Confidence            443                 34899999998 5553221           2      34445544             69


Q ss_pred             cCCCcEEEcCCCcEEEEecCCceecCCCCceeeeeeeecccc----cccc--cCCCCCCC
Q 047066          203 IKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTLGY----YLHT--SQGTLNKE  256 (256)
Q Consensus       203 lk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~~~~Gt~~y----~~~~--~~~t~ksD  256 (256)
                      |||+|||++.++.+||+|||+|+.....    .....||+.|    .+.+  ..++.++|
T Consensus       220 ikp~NIll~~~~~~kL~DFG~a~~~~~~----~~~~~~t~~y~aPE~~~~~~~~~~~~~D  275 (371)
T 3q60_A          220 FTPDNLFIMPDGRLMLGDVSALWKVGTR----GPASSVPVTYAPREFLNASTATFTHALN  275 (371)
T ss_dssp             CSGGGEEECTTSCEEECCGGGEEETTCE----EEGGGSCGGGCCHHHHTCSEEECCHHHH
T ss_pred             CCHHHEEECCCCCEEEEecceeeecCCC----ccCccCCcCCcChhhccCCCCCcCcccc
Confidence            9999999999999999999999976422    1123477888    3333  56676665

>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A*

Probab=99.82  E-value=1.2e-19  Score=154.70  Aligned_cols=149  Identities=19%  Similarity=0.182  Sum_probs=119.7

Q ss_pred             cCCCcccceeeeeCceEEEEEEEC-CC-cEEEEEEecccChhHHHHHHHHHHHHHhCCCCc------ccceeeEEEECCE
Q 047066          103 TNNYAYDRMIGRGGYGTVFLGSLS-DN-KAIAIKKSRIVYQSQIEQCINKVVVLSQINHRN------VVGLLGCCLETEV  174 (256)
Q Consensus       103 ~~~~~~~~~lg~G~~g~V~~~~~~-~~-~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~n------iv~l~~~~~~~~~  174 (256)
                      .++|++.+.||+|+||.||+|... ++ ..||+|.++.. ....+.+.+|+.+++.++|++      ++.+.+++...+.
T Consensus        18 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~-~~~~~~~~~E~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~   96 (355)
T 2eu9_A           18 QERYEIVGNLGEGTFGKVVECLDHARGKSQVALKIIRNV-GKYREAARLEINVLKKIKEKDKENKFLCVLMSDWFNFHGH   96 (355)
T ss_dssp             TTTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSC-HHHHHHHHHHHHHHHHHHHHCTTSCSCBCCEEEEEEETTE
T ss_pred             cccEEEEEEeeccCCeEEEEEEecCCCceEEEEEEEccc-ccchhHHHHHHHHHHHHhhcCCCCceeEEEeeeeeeeCCe
Confidence            478999999999999999999975 34 68999998643 334567889999999987766      8999999999999


Q ss_pred             EEEEEecCCC-----------CCCCHHHHHHHHHHHH-------------hccCCCcEEE-------------------c
Q 047066          175 PLLVNEFVKL-----------PTISWEVRIRIAAETA-------------EDIKSINILL-------------------D  211 (256)
Q Consensus       175 ~~lv~e~~~~-----------~~l~~~~~~~~~~~i~-------------rdlk~~NiLi-------------------~  211 (256)
                      .+++|||+.+           ..+++.....++.|++             +||||+|||+                   +
T Consensus        97 ~~lv~e~~~~~l~~~l~~~~~~~~~~~~~~~i~~qi~~~L~~lH~~~ivH~Dlkp~NIll~~~~~~~~~~~~~~~~~~~~  176 (355)
T 2eu9_A           97 MCIAFELLGKNTFEFLKENNFQPYPLPHVRHMAYQLCHALRFLHENQLTHTDLKPENILFVNSEFETLYNEHKSCEEKSV  176 (355)
T ss_dssp             EEEEEECCCCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHTTTEECCCCCGGGEEESCCCEEEEECCC-CCCEEEE
T ss_pred             EEEEEeccCCChHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEEeccccccccccccccccccc
Confidence            9999999965           2467777777777766             5999999999                   5


Q ss_pred             CCCcEEEEecCCceecCCCCceeeeeeeecccc----cccccCCCCCCC
Q 047066          212 DNYTTKVCDFGASKLVPIDETQLSTMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       212 ~~~~~ki~DFGla~~~~~~~~~~~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      .++.+||+|||+++......    ....||+.|    .+.+..++.++|
T Consensus       177 ~~~~~kl~Dfg~~~~~~~~~----~~~~gt~~y~aPE~~~~~~~~~~~D  221 (355)
T 2eu9_A          177 KNTSIRVADFGSATFDHEHH----TTIVATRHYRPPEVILELGWAQPCD  221 (355)
T ss_dssp             SCCCEEECCCTTCEETTSCC----CSSCSCGGGCCHHHHTTCCCCTHHH
T ss_pred             CCCcEEEeecCccccccccc----cCCcCCCcccCCeeeecCCCCCccc
Confidence            67899999999998754332    234699999    555667777765

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...

Probab=99.81  E-value=1.5e-20  Score=158.92  Aligned_cols=149  Identities=26%  Similarity=0.318  Sum_probs=114.4

Q ss_pred             ccChHHHHhhcCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccCh------hHHHHHHHHHHHHHhCC--CCccc
Q 047066           93 IFTAGELKIATNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVYQ------SQIEQCINKVVVLSQIN--HRNVV  163 (256)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~------~~~~~~~~E~~~l~~l~--h~niv  163 (256)
                      ..+..+.....++|++.+.||+|+||.||+|... +++.||+|.+.....      ...+.+.+|+.+++.++  ||||+
T Consensus        32 ~~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~i~  111 (320)
T 3a99_A           32 LAPGKEKEPLESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVI  111 (320)
T ss_dssp             --------CCTTTEEEEEECSSSSSCEEEEEEETTTTEEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBC
T ss_pred             cCcccccCCccCceEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEecccchhhhhhhhhhHHHHHHHHHHhhccCCCCce
Confidence            3344555666788999999999999999999864 688999998864321      12245678999999995  59999


Q ss_pred             ceeeEEEECCEEEEEEecCCC-----------CCCCHHHHHHHHHHHH-------------hccCCCcEEEc-CCCcEEE
Q 047066          164 GLLGCCLETEVPLLVNEFVKL-----------PTISWEVRIRIAAETA-------------EDIKSINILLD-DNYTTKV  218 (256)
Q Consensus       164 ~l~~~~~~~~~~~lv~e~~~~-----------~~l~~~~~~~~~~~i~-------------rdlk~~NiLi~-~~~~~ki  218 (256)
                      ++++++...+..++++|++.+           +.+++.....++.|++             +||||+|||++ +++.+||
T Consensus       112 ~~~~~~~~~~~~~lv~e~~~~~~~L~~~l~~~~~l~~~~~~~i~~qi~~~L~~LH~~~ivH~Dlkp~NIll~~~~~~~kL  191 (320)
T 3a99_A          112 RLLDWFERPDSFVLILERPEPVQDLFDFITERGALQEELARSFFWQVLEAVRHCHNCGVLHRDIKDENILIDLNRGELKL  191 (320)
T ss_dssp             CEEEEEECSSEEEEEEECCSSEEEHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEETTTTEEEE
T ss_pred             EEEEEEecCCcEEEEEEcCCCCccHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCcEeCCCCHHHEEEeCCCCCEEE
Confidence            999999999999999999975           4466666677777766             59999999999 7889999


Q ss_pred             EecCCceecCCCCceeeeeeeecccc
Q 047066          219 CDFGASKLVPIDETQLSTMVQGTLGY  244 (256)
Q Consensus       219 ~DFGla~~~~~~~~~~~~~~~Gt~~y  244 (256)
                      +|||+++......   .....||+.|
T Consensus       192 ~Dfg~~~~~~~~~---~~~~~gt~~y  214 (320)
T 3a99_A          192 IDFGSGALLKDTV---YTDFDGTRVY  214 (320)
T ss_dssp             CCCTTCEECCSSC---BCCCCSCGGG
T ss_pred             eeCcccccccccc---ccCCCCCccC
Confidence            9999999875432   2234589988

>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group}

Probab=99.81  E-value=1.1e-19  Score=161.86  Aligned_cols=152  Identities=20%  Similarity=0.303  Sum_probs=117.4

Q ss_pred             cCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccChhHHHHHHHHHHHHHhCCC-CcccceeeEEEECCEEEEEEe
Q 047066          103 TNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVYQSQIEQCINKVVVLSQINH-RNVVGLLGCCLETEVPLLVNE  180 (256)
Q Consensus       103 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h-~niv~l~~~~~~~~~~~lv~e  180 (256)
                      .++|++.+.||+|+||.||+|... +++.||||.+.....  .+++..|+.+++.++| +++..+..++...+..+++||
T Consensus         6 ~~~y~i~~~LG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~--~~~~~~E~~il~~L~~~~~i~~i~~~~~~~~~~~lvme   83 (483)
T 3sv0_A            6 GNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTK--HPQLLYESKIYRILQGGTGIPNVRWFGVEGDYNVLVMD   83 (483)
T ss_dssp             TTTEECCCCCEECSSCEEEEEEETTTCCEEEEEEEETTCS--SCCHHHHHHHHHHTTTSTTCCCEEEEEEETTEEEEEEE
T ss_pred             CCcEEEEEEEeeCCCEEEEEEEECCCCcEEEEEEeccccc--cHHHHHHHHHHHHhcCCCCCCeEEEEEeeCCEEEEEEE
Confidence            468999999999999999999974 689999998754332  1357889999999976 566666677778899999999


Q ss_pred             cCCC----------CCCCHHHHHHHHHHHH-------------hccCCCcEEE---cCCCcEEEEecCCceecCCCCcee
Q 047066          181 FVKL----------PTISWEVRIRIAAETA-------------EDIKSINILL---DDNYTTKVCDFGASKLVPIDETQL  234 (256)
Q Consensus       181 ~~~~----------~~l~~~~~~~~~~~i~-------------rdlk~~NiLi---~~~~~~ki~DFGla~~~~~~~~~~  234 (256)
                      |+.+          +.+++...+.++.|++             |||||+|||+   +.++.+||+|||+|+.+.......
T Consensus        84 ~~g~sL~~ll~~~~~~l~~~~~~~i~~qi~~aL~yLH~~gIvHrDIKP~NILl~~~~~~~~vkL~DFGla~~~~~~~~~~  163 (483)
T 3sv0_A           84 LLGPSLEDLFNFCSRKLSLKTVLMLADQMINRVEFVHSKSFLHRDIKPDNFLMGLGRRANQVYIIDFGLAKKYRDTSTHQ  163 (483)
T ss_dssp             CCCCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECCGGGTTCEEECCCTTCEECBCTTTCC
T ss_pred             CCCCCHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHCCEeecccCcceEEEecCCCCCeEEEEeCCcceeccCCcccc
Confidence            9932          3466777777777766             6999999999   688999999999999876543221


Q ss_pred             ------eeeeeecccc----cccccCCCCCCC
Q 047066          235 ------STMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       235 ------~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                            .....||+.|    .+.+..++.++|
T Consensus       164 ~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sD  195 (483)
T 3sv0_A          164 HIPYRENKNLTGTARYASVNTHLGIEQSRRDD  195 (483)
T ss_dssp             BCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHH
T ss_pred             ccccccccccCCCccccCHHHhcCCCCChHHH
Confidence                  2245699999    555666666655

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}

Probab=99.81  E-value=4e-20  Score=155.39  Aligned_cols=144  Identities=28%  Similarity=0.354  Sum_probs=104.3

Q ss_pred             HHHhhcCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccCh------hHHHHHHHHHHHHHhC----CCCccccee
Q 047066           98 ELKIATNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVYQ------SQIEQCINKVVVLSQI----NHRNVVGLL  166 (256)
Q Consensus        98 ~~~~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~------~~~~~~~~E~~~l~~l----~h~niv~l~  166 (256)
                      +.+...++|++.+.||+|+||.||+|... +++.||+|.+.....      .....+.+|+.++.++    +||||++++
T Consensus        25 ~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~h~~i~~~~  104 (312)
T 2iwi_A           25 DREAFEAEYRLGPLLGKGGFGTVFAGHRLTDRLQVAIKVIPRNRVLGWSPLSDSVTCPLEVALLWKVGAGGGHPGVIRLL  104 (312)
T ss_dssp             --------CEEEEEEEEETTEEEEEEECTTTCCEEEEEECCSTTTC--------CCCCHHHHHHHHHHSSCCCSSBCCEE
T ss_pred             chhhhhhceEEeeEEEcCCCEEEEEEEEccCCeEEEEEEEecccccccccchhhHHHHHHHHHHHhhcccCCCCCeeeEE
Confidence            34455678999999999999999999864 688999998865432      1223456799999988    899999999


Q ss_pred             eEEEECCEEEEEEec-CCCC----------CCCHHHHHHHHHHHH-------------hccCCCcEEEc-CCCcEEEEec
Q 047066          167 GCCLETEVPLLVNEF-VKLP----------TISWEVRIRIAAETA-------------EDIKSINILLD-DNYTTKVCDF  221 (256)
Q Consensus       167 ~~~~~~~~~~lv~e~-~~~~----------~l~~~~~~~~~~~i~-------------rdlk~~NiLi~-~~~~~ki~DF  221 (256)
                      +++...+..++++|+ +.++          .+++.....++.+++             +||||+||+++ .++.+||+||
T Consensus       105 ~~~~~~~~~~~v~e~~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~~kl~df  184 (312)
T 2iwi_A          105 DWFETQEGFMLVLERPLPAQDLFDYITEKGPLGEGPSRCFFGQVVAAIQHCHSRGVVHRDIKDENILIDLRRGCAKLIDF  184 (312)
T ss_dssp             EEC-----CEEEEECCSSEEEHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHHTEECCCCSGGGEEEETTTTEEEECCC
T ss_pred             EEEecCCeEEEEEEecCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeeecCCChhhEEEeCCCCeEEEEEc
Confidence            999998999999999 5553          356666666776665             59999999999 8899999999


Q ss_pred             CCceecCCCCceeeeeeeecccc
Q 047066          222 GASKLVPIDETQLSTMVQGTLGY  244 (256)
Q Consensus       222 Gla~~~~~~~~~~~~~~~Gt~~y  244 (256)
                      |+++......   .....||+.|
T Consensus       185 g~~~~~~~~~---~~~~~~~~~y  204 (312)
T 2iwi_A          185 GSGALLHDEP---YTDFDGTRVY  204 (312)
T ss_dssp             SSCEECCSSC---BCCCCSCTTT
T ss_pred             chhhhcccCc---ccccCCcccc
Confidence            9999875432   2234588888

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}

Probab=99.80  E-value=6.8e-21  Score=160.41  Aligned_cols=149  Identities=23%  Similarity=0.362  Sum_probs=113.3

Q ss_pred             ccChHHHHhhcCCCcccceeeeeCceEEEEEEECCCcEEEEEEecccC--hhHHHHHHHHHHHHHhCCCCcccceeeEEE
Q 047066           93 IFTAGELKIATNNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVY--QSQIEQCINKVVVLSQINHRNVVGLLGCCL  170 (256)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~  170 (256)
                      .....++++..++|++.+.||+|+||.||+|..+.  .+++|.+....  ....+.+.+|+.+++.++||||+++++++.
T Consensus        22 ~~~~~~~~i~~~~~~~~~~lg~G~~g~V~~~~~~~--~~avk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~   99 (319)
T 2y4i_B           22 SIFLQEWDIPFEQLEIGELIGKGRFGQVYHGRWHG--EVAIRLIDIERDNEDQLKAFKREVMAYRQTRHENVVLFMGACM   99 (319)
T ss_dssp             CCCGGGSSSCCSCEECCCBCCCSSSSEEEEEEESS--SEEEEECCCCSCCCCCCCCCCTTGGGGTTCCCTTBCCCCEEEE
T ss_pred             ccccccccCCHHHeEEeeEeccCCceEEEEEEEcC--eEEEEEeecCCCCHHHHHHHHHHHHHHhcCCCCCEeEEEEEEe
Confidence            34567788888999999999999999999999754  48999876432  233356778999999999999999999999


Q ss_pred             ECCEEEEEEecCCCC-----------CCCHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCcee
Q 047066          171 ETEVPLLVNEFVKLP-----------TISWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKL  226 (256)
Q Consensus       171 ~~~~~~lv~e~~~~~-----------~l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~  226 (256)
                      ..+..+++|||++++           .+++.....++.+++             +||||+|||++ ++.+||+|||+++.
T Consensus       100 ~~~~~~iv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH~~~i~H~dlkp~NIl~~-~~~~~l~Dfg~~~~  178 (319)
T 2y4i_B          100 SPPHLAIITSLCKGRTLYSVVRDAKIVLDVNKTRQIAQEIVKGMGYLHAKGILHKDLKSKNVFYD-NGKVVITDFGLFSI  178 (319)
T ss_dssp             CSSCEEEECBCCCSEEHHHHTTSSCCCCCSHHHHHHHHHHHHHHHHHHHTTCCCCCCCSTTEEEC---CCEECCCSCCC-
T ss_pred             cCCceEEEeecccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCChhhEEEe-CCCEEEeecCCccc
Confidence            999999999999863           356666677777665             59999999998 67999999999876


Q ss_pred             cCCCCc----eeeeeeeecccc
Q 047066          227 VPIDET----QLSTMVQGTLGY  244 (256)
Q Consensus       227 ~~~~~~----~~~~~~~Gt~~y  244 (256)
                      ......    .......||+.|
T Consensus       179 ~~~~~~~~~~~~~~~~~g~~~y  200 (319)
T 2y4i_B          179 SGVLQAGRREDKLRIQNGWLCH  200 (319)
T ss_dssp             ---------CCSCBCCSGGGGT
T ss_pred             cccccccccccccccCCCcccc
Confidence            532111    112233588888

>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A

Probab=99.80  E-value=5.2e-19  Score=147.24  Aligned_cols=123  Identities=12%  Similarity=0.053  Sum_probs=103.7

Q ss_pred             cCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC---hhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEE
Q 047066          103 TNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY---QSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLV  178 (256)
Q Consensus       103 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv  178 (256)
                      .++|++.+.||+|+||.||+|... +++.||+|.+....   ....+.+.+|+..+..++||||+++++++...+..++|
T Consensus        30 ~~~y~i~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv  109 (286)
T 3uqc_A           30 NGRYRLLIFHGGVPPLQFWQALDTALDRQVALTFVDPQGVLPDDVLQETLSRTLRLSRIDKPGVARVLDVVHTRAGGLVV  109 (286)
T ss_dssp             TTTEEEEEEEEBSTTCEEEEEEETTTTEEEEEEESCTTCCSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEE
T ss_pred             cCcEEEEEEEcccCCeEEEEEEecCCCceEEEEEECcccccCHHHHHHHHHHHHHHhcCCCCCcceeeEEEEECCcEEEE
Confidence            367999999999999999999975 58999999986543   34457899999999999999999999999999999999


Q ss_pred             EecCCCCCC--------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCce
Q 047066          179 NEFVKLPTI--------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASK  225 (256)
Q Consensus       179 ~e~~~~~~l--------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~  225 (256)
                      |||+++++|        .......++.|++             +||||+|||++.++.+||+++|...
T Consensus       110 ~e~~~g~~L~~~l~~~~~~~~~~~i~~ql~~aL~~lH~~givH~Dikp~NIll~~~g~~kl~~~~~~~  177 (286)
T 3uqc_A          110 AEWIRGGSLQEVADTSPSPVGAIRAMQSLAAAADAAHRAGVALSIDHPSRVRVSIDGDVVLAYPATMP  177 (286)
T ss_dssp             EECCCEEEHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCSGGGEEEETTSCEEECSCCCCT
T ss_pred             EEecCCCCHHHHHhcCCChHHHHHHHHHHHHHHHHHHHCCCccCCCCcccEEEcCCCCEEEEeccccC
Confidence            999988664        2334455565554             6999999999999999999887654

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*

Probab=99.79  E-value=1.9e-20  Score=171.40  Aligned_cols=151  Identities=24%  Similarity=0.331  Sum_probs=117.5

Q ss_pred             CCCcccceeeeeCceEEEEEEEC-CCcEEEEEEeccc-ChhHHHHHHHHHHHHHhCCCCcccceeeEEEE------CCEE
Q 047066          104 NNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIV-YQSQIEQCINKVVVLSQINHRNVVGLLGCCLE------TEVP  175 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~------~~~~  175 (256)
                      ++|++.+.||+|+||.||+|... +++.||+|.+... .....+.+.+|+.+++.++||||+++++++..      .+..
T Consensus        14 grY~i~~~LG~G~fG~Vyla~~~~tg~~VAVKvi~~~~~~~~~~~~~~Ei~iL~~L~HpnIV~l~~v~~~~~~~~~~~~~   93 (676)
T 3qa8_A           14 GPWEMKERLGTGGFGYVLRWIHQDTGEQVAIKQCRQELSPKNRERWCLEIQIMKKLNHPNVVSAREVPDGLQKLAPNDLP   93 (676)
T ss_dssp             ---CCCCCCCBCSSSBCCCCCCTTTTCCEEECCCCSCCCHHHHHHHHHHHHHHHHCCBTTBCCEEECCTTTCCCCTTSSC
T ss_pred             CCeEEEEEEeeCCCeEEEEEEECCCCcEEEEEEecccCCHHHHHHHHHHHHHHHhCCCCCCCceeeeecccccccCCCeE
Confidence            68999999999999999999874 6889999987654 35556789999999999999999999998754      6678


Q ss_pred             EEEEecCCCCCC-------------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCc---EEEEecCCcee
Q 047066          176 LLVNEFVKLPTI-------------SWEVRIRIAAETA-------------EDIKSINILLDDNYT---TKVCDFGASKL  226 (256)
Q Consensus       176 ~lv~e~~~~~~l-------------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~---~ki~DFGla~~  226 (256)
                      ++||||+++++|             ++.....++.+++             +||||+||+++.++.   +||+|||+++.
T Consensus        94 ~LVmEy~~ggsL~~~L~~~~~~~~lse~~i~~I~~QLl~aL~yLHs~gIVHrDLKP~NILl~~~g~~~~vKL~DFG~a~~  173 (676)
T 3qa8_A           94 LLAMEYCEGGDLRKYLNQFENCCGLKEGPIRTLLSDISSALRYLHENRIIHRDLKPENIVLQPGPQRLIHKIIDLGYAKE  173 (676)
T ss_dssp             CCEEECCSSCBHHHHHHSSSCTTCCCSSHHHHHHHHHHHHHHHHHHTTBCCCCCCSTTEEEECCSSSCEEEECSCCCCCB
T ss_pred             EEEEEeCCCCCHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHCCCccCCCCHHHeEeecCCCceeEEEcccccccc
Confidence            999999988654             3334445555544             699999999987664   99999999998


Q ss_pred             cCCCCceeeeeeeecccc----cccccCCCCCCC
Q 047066          227 VPIDETQLSTMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       227 ~~~~~~~~~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      ......  .....||+.|    .+.++.++.++|
T Consensus       174 ~~~~~~--~~~~~gt~~Y~APE~l~~~~~s~ksD  205 (676)
T 3qa8_A          174 LDQGEL--CTEFVGTLQYLAPELLEQKKYTVTVD  205 (676)
T ss_dssp             TTSCCC--CCCCCSCCTTCSSCSSCCSCCSTTHH
T ss_pred             cccccc--cccccCCcccCChHHhccCCCCchhH
Confidence            754332  2335699999    556677888776

>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A

Probab=99.79  E-value=2.8e-19  Score=153.64  Aligned_cols=149  Identities=21%  Similarity=0.245  Sum_probs=115.3

Q ss_pred             cCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccChhHHHHHHHHHHHHHhCC-----------CCcccceeeEEE
Q 047066          103 TNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVYQSQIEQCINKVVVLSQIN-----------HRNVVGLLGCCL  170 (256)
Q Consensus       103 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-----------h~niv~l~~~~~  170 (256)
                      .++|++.+.||+|+||.||+|... +++.||+|.+... ....+.+.+|+.+++.++           ||||+++++++.
T Consensus        18 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~i~~~~~~~~   96 (373)
T 1q8y_A           18 DARYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGD-KVYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHFN   96 (373)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSC-HHHHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEEEE
T ss_pred             CCeEEEEEeeeecCCeEEEEEEecCCCcEEEEEEecCC-ccchhhhhHHHHHHHHhhcccccchhccccchHHHHHHHhh
Confidence            468999999999999999999974 6889999988643 334467889999998886           899999999998


Q ss_pred             ECC----EEEEEEecCCC-----------CCCCHHHHHHHHHHHH--------------hccCCCcEEEc------CCCc
Q 047066          171 ETE----VPLLVNEFVKL-----------PTISWEVRIRIAAETA--------------EDIKSINILLD------DNYT  215 (256)
Q Consensus       171 ~~~----~~~lv~e~~~~-----------~~l~~~~~~~~~~~i~--------------rdlk~~NiLi~------~~~~  215 (256)
                      ..+    ..+++||++.+           +.+++.....++.|++              +||||+|||++      ..+.
T Consensus        97 ~~~~~~~~~~lv~e~~~~~L~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~lH~~~~ivH~Dikp~NIll~~~~~~~~~~~  176 (373)
T 1q8y_A           97 HKGPNGVHVVMVFEVLGENLLALIKKYEHRGIPLIYVKQISKQLLLGLDYMHRRCGIIHTDIKPENVLMEIVDSPENLIQ  176 (373)
T ss_dssp             EEETTEEEEEEEECCCCEEHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHTTCEECSCCSGGGEEEEEEETTTTEEE
T ss_pred             ccCCCCceEEEEEecCCCCHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHhcCCEEecCCChHHeEEeccCCCcCcce
Confidence            654    78999999832           3356666666665554              69999999994      4458


Q ss_pred             EEEEecCCceecCCCCceeeeeeeecccc----cccccCCCCCCC
Q 047066          216 TKVCDFGASKLVPIDETQLSTMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       216 ~ki~DFGla~~~~~~~~~~~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      +||+|||+++.....    .....||+.|    .+.+..++.++|
T Consensus       177 ~kl~Dfg~a~~~~~~----~~~~~~t~~y~aPE~~~~~~~~~~~D  217 (373)
T 1q8y_A          177 IKIADLGNACWYDEH----YTNSIQTREYRSPEVLLGAPWGCGAD  217 (373)
T ss_dssp             EEECCCTTCEETTBC----CCSCCSCGGGCCHHHHHTCCCCTHHH
T ss_pred             EEEcccccccccCCC----CCCCCCCccccCcHHHhCCCCCchHh
Confidence            999999999876533    2234689999    555666777765

>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*

Probab=99.78  E-value=3.2e-19  Score=151.80  Aligned_cols=146  Identities=18%  Similarity=0.162  Sum_probs=97.7

Q ss_pred             cCCCccc-ceeeeeCceEEEEEEEC-CCcEEEEEEecccChhHHHHHHHHH-HHHHhCCCCcccceeeEEEE----CCEE
Q 047066          103 TNNYAYD-RMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVYQSQIEQCINKV-VVLSQINHRNVVGLLGCCLE----TEVP  175 (256)
Q Consensus       103 ~~~~~~~-~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~-~~l~~l~h~niv~l~~~~~~----~~~~  175 (256)
                      .++|.+. ++||+|+||.||+|..+ +++.||+|.+....     ...+|+ ..++.++||||+++++++..    ....
T Consensus        27 ~~~y~i~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~-----~~~~e~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~  101 (336)
T 3fhr_A           27 TDDYQLSKQVLGLGVNGKVLECFHRRTGQKCALKLLYDSP-----KARQEVDHHWQASGGPHIVCILDVYENMHHGKRCL  101 (336)
T ss_dssp             GGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESSH-----HHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEE
T ss_pred             cceeEecceeeeeCCCeEEEEEEECCCCCEEEEEEecCcH-----HHHHHHHHHHHhcCCCChHHHHHHHhhccCCCceE
Confidence            3678885 47999999999999976 68999999886432     122333 34566799999999999986    4558


Q ss_pred             EEEEecCCCCC------------CCHHHHHHHHHHHH-------------hccCCCcEEEcC---CCcEEEEecCCceec
Q 047066          176 LLVNEFVKLPT------------ISWEVRIRIAAETA-------------EDIKSINILLDD---NYTTKVCDFGASKLV  227 (256)
Q Consensus       176 ~lv~e~~~~~~------------l~~~~~~~~~~~i~-------------rdlk~~NiLi~~---~~~~ki~DFGla~~~  227 (256)
                      ++||||+++++            +++.....++.|++             +||||+|||++.   ++.+||+|||+++..
T Consensus       102 ~lv~e~~~gg~L~~~l~~~~~~~l~~~~~~~i~~ql~~~l~~LH~~~ivH~dlkp~NIll~~~~~~~~~kl~Dfg~~~~~  181 (336)
T 3fhr_A          102 LIIMECMEGGELFSRIQERGDQAFTEREAAEIMRDIGTAIQFLHSHNIAHRDVKPENLLYTSKEKDAVLKLTDFGFAKET  181 (336)
T ss_dssp             EEEEECCTTEEHHHHHHTC-CCCCBHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEESCSSTTCCEEECCCTTCEEC
T ss_pred             EEEEeccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEEecCCCceEEEeccccceec
Confidence            99999998744            56666777777765             599999999976   456999999999876


Q ss_pred             CCCCceeeeeeeecccc----cccccCCCCCCC
Q 047066          228 PIDETQLSTMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       228 ~~~~~~~~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      ....   .....||+.|    .+.+..++.++|
T Consensus       182 ~~~~---~~~~~~t~~y~aPE~~~~~~~~~~~D  211 (336)
T 3fhr_A          182 TQNA---LQTPCYTPYYVAPEVLGPEKYDKSCD  211 (336)
T ss_dssp             -------------------------CHHHHHHH
T ss_pred             cccc---cccCCCCcCccChhhhCCCCCCchhh
Confidence            4322   2334588888    333444444443

>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A*

Probab=99.77  E-value=3.8e-18  Score=142.62  Aligned_cols=122  Identities=19%  Similarity=0.215  Sum_probs=100.0

Q ss_pred             CCCccc-ceeeeeCceEEEEEEEC-CCcEEEEEEecccChhHHHHHHHHHHHH-HhCCCCcccceeeEEEE----CCEEE
Q 047066          104 NNYAYD-RMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVYQSQIEQCINKVVVL-SQINHRNVVGLLGCCLE----TEVPL  176 (256)
Q Consensus       104 ~~~~~~-~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l-~~l~h~niv~l~~~~~~----~~~~~  176 (256)
                      ++|.+. +.||+|+||.||++... +++.||+|.+...     ..+.+|+.++ +.++||||+++++++..    .+..+
T Consensus        17 ~~y~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~-----~~~~~e~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~   91 (299)
T 3m2w_A           17 DDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDC-----PKARREVELHWRASQCPHIVRIVDVYENLYAGRKCLL   91 (299)
T ss_dssp             GTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECS-----HHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEEE
T ss_pred             cchhhcCcccccCCCeEEEEEEEcCCCcEEEEEEeccc-----HHHHHHHHHHHHhccCCCchhHHhhhhhhcCCCceEE
Confidence            456666 78999999999999974 6889999988642     4566888887 55599999999999987    67799


Q ss_pred             EEEecCCCCC------------CCHHHHHHHHHHHH-------------hccCCCcEEEcC---CCcEEEEecCCceecC
Q 047066          177 LVNEFVKLPT------------ISWEVRIRIAAETA-------------EDIKSINILLDD---NYTTKVCDFGASKLVP  228 (256)
Q Consensus       177 lv~e~~~~~~------------l~~~~~~~~~~~i~-------------rdlk~~NiLi~~---~~~~ki~DFGla~~~~  228 (256)
                      ++|||+++++            +++.....++.+++             +||||+|||++.   ++.+||+|||++....
T Consensus        92 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~  171 (299)
T 3m2w_A           92 IVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHSINIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETT  171 (299)
T ss_dssp             EEECCCCSCBHHHHHHHCTTCCCBHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEESSSSTTCCEEECCCTTCEECT
T ss_pred             EEEeecCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEEEecCCCCCcEEEeccccccccc
Confidence            9999998854            45666666776665             699999999998   7899999999998765


Q ss_pred             CC
Q 047066          229 ID  230 (256)
Q Consensus       229 ~~  230 (256)
                      ..
T Consensus       172 ~~  173 (299)
T 3m2w_A          172 GE  173 (299)
T ss_dssp             TC
T ss_pred             cc
Confidence            43

>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*

Probab=99.76  E-value=3.5e-18  Score=141.99  Aligned_cols=124  Identities=15%  Similarity=0.121  Sum_probs=94.2

Q ss_pred             hhcCCCcccceeeeeCceEEEEEEECCCcEEEEEEecccCh------------------hHHHHHHHHHHHHHhCCCCcc
Q 047066          101 IATNNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQ------------------SQIEQCINKVVVLSQINHRNV  162 (256)
Q Consensus       101 ~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~------------------~~~~~~~~E~~~l~~l~h~ni  162 (256)
                      .....|.+.+.||+|+||.||+|...+++.||+|.++....                  .....+.+|+.+++.++  | 
T Consensus        87 ~~~~~~~~~~~iG~G~~g~Vy~~~~~~g~~valK~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~E~~~l~~l~--~-  163 (282)
T 1zar_A           87 RSGKVDAIGKLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQ--G-  163 (282)
T ss_dssp             HTTSCSEEEEEEEECSSEEEEEEEETTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHTT--T-
T ss_pred             hCCeEEEecCEeccCCCceEEEEEeCCCCEEEEEEEECCCCchhhhhhhhhhcchhhHHHHHHHHHHHHHHHHhcc--C-
Confidence            34455667799999999999999997799999998864221                  13467899999999999  4 


Q ss_pred             cceeeEEEECCEEEEEEecCCCCCCCH---HHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCcee
Q 047066          163 VGLLGCCLETEVPLLVNEFVKLPTISW---EVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKL  226 (256)
Q Consensus       163 v~l~~~~~~~~~~~lv~e~~~~~~l~~---~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~  226 (256)
                      +++.+++.. +..++||||+++++|..   .....++.|++             |||||+|||++ ++.+||+|||+|+.
T Consensus       164 ~~v~~~~~~-~~~~lvmE~~~g~~L~~l~~~~~~~i~~qi~~~l~~lH~~giiHrDlkp~NILl~-~~~vkl~DFG~a~~  241 (282)
T 1zar_A          164 LAVPKVYAW-EGNAVLMELIDAKELYRVRVENPDEVLDMILEEVAKFYHRGIVHGDLSQYNVLVS-EEGIWIIDFPQSVE  241 (282)
T ss_dssp             SSSCCEEEE-ETTEEEEECCCCEEGGGCCCSCHHHHHHHHHHHHHHHHHTTEECSCCSTTSEEEE-TTEEEECCCTTCEE
T ss_pred             CCcCeEEec-cceEEEEEecCCCcHHHcchhhHHHHHHHHHHHHHHHHHCCCEeCCCCHHHEEEE-CCcEEEEECCCCeE
Confidence            666665544 45699999999987643   11223343333             69999999999 99999999999997


Q ss_pred             cCC
Q 047066          227 VPI  229 (256)
Q Consensus       227 ~~~  229 (256)
                      ...
T Consensus       242 ~~~  244 (282)
T 1zar_A          242 VGE  244 (282)
T ss_dssp             TTS
T ss_pred             CCC
Confidence            643

>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*

Probab=99.75  E-value=5.9e-19  Score=159.17  Aligned_cols=134  Identities=15%  Similarity=0.180  Sum_probs=94.5

Q ss_pred             ccceeeeeCceEEEEEEECCCcEEEEEEecccC---h-----hHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEE
Q 047066          108 YDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVY---Q-----SQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVN  179 (256)
Q Consensus       108 ~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~---~-----~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~  179 (256)
                      ..+.||+|+||.||+|.. .+..+++|......   .     ...+++.+|++++++++||||+++..++...+..++||
T Consensus       340 ~~~~LG~G~fg~Vy~~~~-~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~~~~~~~~~~~~~lVm  418 (540)
T 3en9_A          340 PEHLIGKGAEADIKRDSY-LDFDVIIKERVKKGYRDERLDENIRKSRTAREARYLALVKDFGIPAPYIFDVDLDNKRIMM  418 (540)
T ss_dssp             --------CCEEEEEEEC-SSCEEEEEEECCCTTSCHHHHHHHHHHHHHHHHHHHHHGGGGTCCCCCEEEEETTTTEEEE
T ss_pred             CCCEEeeCCCEEEEEEEE-CCCeEEEEEEecccccchhhhhHHHHHHHHHHHHHHHhcCCCCcCceEEEEEeCCccEEEE
Confidence            356899999999999954 67788888753211   1     12356899999999999999997777777888889999


Q ss_pred             ecCCCCCCCHHH--HHHHHHH-------------HHhccCCCcEEEcCCCcEEEEecCCceecCCCCcee------eeee
Q 047066          180 EFVKLPTISWEV--RIRIAAE-------------TAEDIKSINILLDDNYTTKVCDFGASKLVPIDETQL------STMV  238 (256)
Q Consensus       180 e~~~~~~l~~~~--~~~~~~~-------------i~rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~------~~~~  238 (256)
                      ||+++++|....  ...++.|             +||||||+|||+++  .+||+|||+|+.........      ....
T Consensus       419 E~~~ggsL~~~l~~~~~i~~qi~~aL~~LH~~gIiHrDiKp~NILl~~--~~kL~DFGla~~~~~~~~~~~~~~~~~~~~  496 (540)
T 3en9_A          419 SYINGKLAKDVIEDNLDIAYKIGEIVGKLHKNDVIHNDLTTSNFIFDK--DLYIIDFGLGKISNLDEDKAVDLIVFKKAV  496 (540)
T ss_dssp             ECCCSEEHHHHSTTCTHHHHHHHHHHHHHHHTTEECTTCCTTSEEESS--SEEECCCTTCEECCCHHHHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCcCccCCCCHHHEEECC--eEEEEECccCEECCCccccccchhhhhhhh
Confidence            999998874322  1233333             33799999999999  99999999999875432221      1345


Q ss_pred             eecccc
Q 047066          239 QGTLGY  244 (256)
Q Consensus       239 ~Gt~~y  244 (256)
                      +||+.|
T Consensus       497 ~GT~~y  502 (540)
T 3en9_A          497 LSTHHE  502 (540)
T ss_dssp             HHHCGG
T ss_pred             cCCCCc
Confidence            799988

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}

Probab=99.70  E-value=8.3e-18  Score=146.99  Aligned_cols=138  Identities=10%  Similarity=0.135  Sum_probs=94.1

Q ss_pred             hcCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccCh---hHHHHHHHHHHHHHhCCC-Cccc---------ceee
Q 047066          102 ATNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVYQ---SQIEQCINKVVVLSQINH-RNVV---------GLLG  167 (256)
Q Consensus       102 ~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~---~~~~~~~~E~~~l~~l~h-~niv---------~l~~  167 (256)
                      ....|...+.||+|+||.||+|.+. +++.||||.+.....   ...+.+.+|+.+++.++| +|..         ....
T Consensus        76 ~~~~~~~~~~LG~G~fG~Vy~a~~~~~g~~vAvK~~~~~~~~~~~~~~~~~~E~~~~~~l~~~~~~~~~~~~~~~~~~~~  155 (413)
T 3dzo_A           76 RPRTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFD  155 (413)
T ss_dssp             CCEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEECCSCC----CCHHHHHHHHGGGGSTTCCSHHHHHHHTCBCCCCE
T ss_pred             CceeEEEecccccCCCEEEEEEEecCCCCceEEEEEecCCCccHHHHHHHHHHHHHHHhhccCCCHHHHHHhcccccchh
Confidence            3455778899999999999999964 689999998874332   224678999999999976 3211         1111


Q ss_pred             E------------EEE-----CCEEEEEEecCCC----------------CCCCHHHHHHHHHHHH-------------h
Q 047066          168 C------------CLE-----TEVPLLVNEFVKL----------------PTISWEVRIRIAAETA-------------E  201 (256)
Q Consensus       168 ~------------~~~-----~~~~~lv~e~~~~----------------~~l~~~~~~~~~~~i~-------------r  201 (256)
                      .            +..     ....+++|+++.+                +.+++..++.++.|++             |
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~iiHr  235 (413)
T 3dzo_A          156 LVKDPQKKKMIRVRLDERDMWVLSRFFLYPRMQSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHHYGLVHT  235 (413)
T ss_dssp             EEECCC---------------CCSEEEEEECCSEEHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHHTTEECS
T ss_pred             hcccCCCCccccccCCCccccccceEEEeehhcCCHHHHHHHhhcccccCCCCCHHHHHHHHHHHHHHHHHHHhCCcccC
Confidence            1            111     1235666765542                1233445555656655             6


Q ss_pred             ccCCCcEEEcCCCcEEEEecCCceecCCCCceeeeeeeecccc
Q 047066          202 DIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTLGY  244 (256)
Q Consensus       202 dlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~~~~Gt~~y  244 (256)
                      ||||+|||++.++.+||+|||+++.....    ....+| +.|
T Consensus       236 DiKp~NILl~~~~~~kL~DFG~a~~~~~~----~~~~~g-~~y  273 (413)
T 3dzo_A          236 YLRPVDIVLDQRGGVFLTGFEHLVRDGAS----AVSPIG-RGF  273 (413)
T ss_dssp             CCCGGGEEECTTCCEEECCGGGCEETTEE----ECCCCC-TTT
T ss_pred             CcccceEEEecCCeEEEEeccceeecCCc----cccCCC-Cce
Confidence            99999999999999999999999875432    334467 888

>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*

Probab=99.59  E-value=2.4e-15  Score=123.28  Aligned_cols=122  Identities=20%  Similarity=0.126  Sum_probs=84.2

Q ss_pred             CCcccceeeeeCceEEEEEEE-CCCcE--EEEEEecccChh------------------------HHHHHHHHHHHHHhC
Q 047066          105 NYAYDRMIGRGGYGTVFLGSL-SDNKA--IAIKKSRIVYQS------------------------QIEQCINKVVVLSQI  157 (256)
Q Consensus       105 ~~~~~~~lg~G~~g~V~~~~~-~~~~~--vavK~~~~~~~~------------------------~~~~~~~E~~~l~~l  157 (256)
                      -|.+.+.||+|+||.||+|.. .+|+.  ||+|..+.....                        ....+.+|+..+..+
T Consensus        48 ~~~i~~~ig~G~~g~Vy~a~~~~~g~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l  127 (258)
T 1zth_A           48 ITAMGGVISTGKEANVFYADGVFDGKPVAMAVKIYRIETSEFDKMDEYLYGDERFDMRRISPKEKVFIWTEKEFRNLERA  127 (258)
T ss_dssp             EEEEEEEEEECSSEEEEEEEEEETTEEEEEEEEEECCC-------GGGTTTCTTSCC----CHHHHHHHHHHHHHHHHHH
T ss_pred             chhhCCEEeecceEEEEEEEEcCCCcEeeEEEEEEECCccchhhHHHhhcccchhhhhccChHHHHHHHHHHHHHHHHHH
Confidence            356788999999999999997 67888  999986432111                        113678999999999


Q ss_pred             CCCcccceeeEEEECCEEEEEEecCCC-C----CCCHH-------HHHHHHHH--------------HHhccCCCcEEEc
Q 047066          158 NHRNVVGLLGCCLETEVPLLVNEFVKL-P----TISWE-------VRIRIAAE--------------TAEDIKSINILLD  211 (256)
Q Consensus       158 ~h~niv~l~~~~~~~~~~~lv~e~~~~-~----~l~~~-------~~~~~~~~--------------i~rdlk~~NiLi~  211 (256)
                      +|+++....-+..  +..++||||+.+ |    .|...       ....++.+              +|+||||+|||++
T Consensus       128 ~~~~i~~p~~~~~--~~~~lVmE~~g~~g~~~~~L~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~givHrDlkp~NILl~  205 (258)
T 1zth_A          128 KEAGVSVPQPYTY--MKNVLLMEFIGEDELPAPTLVELGRELKELDVEGIFNDVVENVKRLYQEAELVHADLSEYNIMYI  205 (258)
T ss_dssp             HHTTCCCCCEEEE--ETTEEEEECCEETTEECCBHHHHGGGGGGSCHHHHHHHHHHHHHHHHHTSCEECSSCSTTSEEES
T ss_pred             HhCCCCCCeEEEc--CCCEEEEEecCCCCCccccHHHHhhccChHHHHHHHHHHHHHHHHHHHHCCEEeCCCCHHHEEEc
Confidence            8886532222222  346899999942 2    22110       11222222              2369999999999


Q ss_pred             CCCcEEEEecCCceecCCC
Q 047066          212 DNYTTKVCDFGASKLVPID  230 (256)
Q Consensus       212 ~~~~~ki~DFGla~~~~~~  230 (256)
                      +  .++|+|||+|.....+
T Consensus       206 ~--~~~liDFG~a~~~~~~  222 (258)
T 1zth_A          206 D--KVYFIDMGQAVTLRHP  222 (258)
T ss_dssp             S--SEEECCCTTCEETTST
T ss_pred             C--cEEEEECcccccCCCc
Confidence            8  9999999999876543

>4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A

Probab=99.39  E-value=6.5e-14  Score=120.30  Aligned_cols=123  Identities=14%  Similarity=0.158  Sum_probs=80.4

Q ss_pred             CCCcccceeeeeCceEEEEEEECCCcEEEEEEecccC--------------hhHHH--------HHHHHHHHHHhCCCCc
Q 047066          104 NNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVY--------------QSQIE--------QCINKVVVLSQINHRN  161 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~--------------~~~~~--------~~~~E~~~l~~l~h~n  161 (256)
                      .-|.+.+.||+|++|.||+|...+|+.||||..+...              .....        ...+|...|.++.+++
T Consensus        95 ~iY~I~~~IG~Gk~a~VY~a~d~~G~~vAvKi~r~~~~sfr~v~~~r~~~~~~~~~~~~~~~rl~A~kE~~nL~rL~~~g  174 (397)
T 4gyi_A           95 DVYSVGSRIGVGKESDIMIVADEKGKQKVLKIHRLGRISFRTVKANRDYLRNRSTGSWMYLSRLAAIKEFAFMKALYEEG  174 (397)
T ss_dssp             SCSEEEEEEEECSSEEEEEEECTTCCEEEEEEECTTEECCCCCC--CEECTTSCHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             CEEEecCEeeeCCceEEEEEECCCCCEEEEEEEecccccHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhcC
Confidence            3488999999999999999998899999999764210              00001        1245666777775544


Q ss_pred             ccceeeEEEECCEEEEEEecCCCCCCCH--------HH---------HHHHHHHHHhccCCCcEEEcCCC----------
Q 047066          162 VVGLLGCCLETEVPLLVNEFVKLPTISW--------EV---------RIRIAAETAEDIKSINILLDDNY----------  214 (256)
Q Consensus       162 iv~l~~~~~~~~~~~lv~e~~~~~~l~~--------~~---------~~~~~~~i~rdlk~~NiLi~~~~----------  214 (256)
                      +....-+....  .++||||+++.++..        ..         .++-..-|||||||.|||+++++          
T Consensus       175 v~vp~p~~~~~--~~LVME~i~G~~L~~l~~~~~~~~l~~qll~~l~~lH~~gIVHrDLKp~NILl~~dgd~~d~~~~~~  252 (397)
T 4gyi_A          175 FPVPEPIAQSR--HTIVMSLVDALPMRQVSSVPDPASLYADLIALILRLAKHGLIHGDFNEFNILIREEKDAEDPSSITL  252 (397)
T ss_dssp             CSCCCEEEEET--TEEEEECCSCEEGGGCCCCSCHHHHHHHHHHHHHHHHHTTEECSCCSTTSEEEEEEECSSCTTSEEE
T ss_pred             CCCCeeeeccC--ceEEEEecCCccHhhhcccHHHHHHHHHHHHHHHHHHHCCCcCCCCCHHHEEEeCCCCccccccccc
Confidence            43222222222  369999998865421        01         11111224479999999998776          


Q ss_pred             cEEEEecCCceecC
Q 047066          215 TTKVCDFGASKLVP  228 (256)
Q Consensus       215 ~~ki~DFGla~~~~  228 (256)
                      .+.|+||+-+....
T Consensus       253 ~~~iID~~Q~V~~~  266 (397)
T 4gyi_A          253 TPIIIXFPQMVSMD  266 (397)
T ss_dssp             EEEECCCTTCEETT
T ss_pred             ceEEEEeCCcccCC
Confidence            38999999887653

>3tm0_A Aminoglycoside 3'-phosphotransferase; protein kinase, phosphorylation, transferase-antibiotic COMP; HET: ANP B31; 2.10A {Enterococcus faecalis} SCOP: d.144.1.6 PDB: 2b0q_A* 1l8t_A* 3q2j_A* 1j7i_A* 1j7u_A* 3h8p_A* 1j7l_A* 2bkk_A*

Probab=98.80  E-value=2.6e-08  Score=81.03  Aligned_cols=83  Identities=10%  Similarity=-0.034  Sum_probs=66.2

Q ss_pred             CCCcccceeeeeCceEEEEEEECCCcEEEEEEecccChhHHHHHHHHHHHHHhC-CCCcccceeeEEEECCEEEEEEecC
Q 047066          104 NNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQI-NHRNVVGLLGCCLETEVPLLVNEFV  182 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~lv~e~~  182 (256)
                      ..|.+...++.|+.+.||++.. ++..+++|............+.+|+.+++.+ ++.++.++++++...+..+++||++
T Consensus        14 ~~~~~~~~~~g~s~~~v~~~~~-~~~~~vlK~~~~~~~~~~~~~~~E~~~l~~l~~~~~vP~v~~~~~~~~~~~lv~e~i   92 (263)
T 3tm0_A           14 EKYRCVKDTEGMSPAKVYKLVG-ENENLYLKMTDSRYKGTTYDVEREKDMMLWLEGKLPVPKVLHFERHDGWSNLLMSEA   92 (263)
T ss_dssp             TTSEEEECCSCCSSSEEEEEEC-SSCEEEEEEECGGGTTSTTCHHHHHHHHHHHTTTSCCCCEEEEEEETTEEEEEEECC
T ss_pred             ccceeEeeccCCCCCeEEEEEC-CCCcEEEEeCCcccCCCHHHHHHHHHHHHHHhcCCCCCeEEEEEecCCceEEEEEec
Confidence            4687778888888899999875 4678999987643222234578899999988 4778889999999999999999999


Q ss_pred             CCCCC
Q 047066          183 KLPTI  187 (256)
Q Consensus       183 ~~~~l  187 (256)
                      +|.++
T Consensus        93 ~G~~l   97 (263)
T 3tm0_A           93 DGVLC   97 (263)
T ss_dssp             SSEEH
T ss_pred             CCeeh
Confidence            98654

>1nd4_A Aminoglycoside 3'-phosphotransferase; protein kinase, ATPase, kanamycin; HET: KAN; 2.10A {Klebsiella pneumoniae} SCOP: d.144.1.6

Probab=98.69  E-value=5e-08  Score=78.88  Aligned_cols=81  Identities=14%  Similarity=0.082  Sum_probs=58.9

Q ss_pred             CCcccceeeeeCceEEEEEEECCCcEEEEEEecccChhHHHHHHHHHHHHHhCCCCc--ccceeeEEEECCEEEEEEecC
Q 047066          105 NYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRN--VVGLLGCCLETEVPLLVNEFV  182 (256)
Q Consensus       105 ~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~n--iv~l~~~~~~~~~~~lv~e~~  182 (256)
                      ++.+..+.+.|..+.||++...+|..+++|.....   ....+.+|+.+++.+.+.+  +.+++++....+..+++|||+
T Consensus        21 ~~~~~~~~~gg~~~~v~~~~~~~g~~~vlK~~~~~---~~~~~~~E~~~l~~l~~~~~~vP~~~~~~~~~~~~~~v~e~i   97 (264)
T 1nd4_A           21 GYDWAQQTIGCSDAAVFRLSAQGRPVLFVKTDLSG---ALNELQDEAARLSWLATTGVPCAAVLDVVTEAGRDWLLLGEV   97 (264)
T ss_dssp             TCEEEECSCTTSSCEEEEEECTTSCCEEEEEECSC---TTSCHHHHHHHHHHHHTTTCCBCCEEEEEECSSCEEEEEECC
T ss_pred             CCceEecccCCCCceEEEEecCCCCeEEEEeCCcc---cchhhhHHHHHHHHHHhCCCCCCeEEEeccCCCCCEEEEEec
Confidence            44543333355568999998767788999986543   2245678999999885434  556888888777899999999


Q ss_pred             CCCCCC
Q 047066          183 KLPTIS  188 (256)
Q Consensus       183 ~~~~l~  188 (256)
                      ++.++.
T Consensus        98 ~G~~l~  103 (264)
T 1nd4_A           98 PGQDLL  103 (264)
T ss_dssp             SSEETT
T ss_pred             CCcccC
Confidence            987764

>3dxp_A Putative acyl-COA dehydrogenase; protein kinase-like fold, structural genomics, joint center structural genomics, JCSG; 2.32A {Ralstonia eutropha JMP134}

Probab=98.23  E-value=6.5e-06  Score=69.97  Aligned_cols=78  Identities=10%  Similarity=0.113  Sum_probs=55.1

Q ss_pred             cceeeeeCceEEEEEEECCCcEEEEEEec--ccC-hhHHHHHHHHHHHHHhCC--CCcccceeeEEEEC---CEEEEEEe
Q 047066          109 DRMIGRGGYGTVFLGSLSDNKAIAIKKSR--IVY-QSQIEQCINKVVVLSQIN--HRNVVGLLGCCLET---EVPLLVNE  180 (256)
Q Consensus       109 ~~~lg~G~~g~V~~~~~~~~~~vavK~~~--~~~-~~~~~~~~~E~~~l~~l~--h~niv~l~~~~~~~---~~~~lv~e  180 (256)
                      .+.++.|.++.||+.... +..+++|...  ... ......+.+|..+++.+.  +.++.+++.++.+.   +..+++||
T Consensus        43 ~~~l~~G~sn~~y~v~~~-~~~~vlr~~~~p~~~~~~~~~~~~~E~~~l~~L~~~~vpvP~~~~~~~~~~~~g~~~~vme  121 (359)
T 3dxp_A           43 VEQFKGGQSNPTFKLVTP-GQTYVMRAKPGPKSKLLPSAHAIEREYRVMDALAGTDVPVAKMYALCEDESVIGRAFYIME  121 (359)
T ss_dssp             EEECCC-CCSCEEEEECS-SCEEEEECCCC----------CHHHHHHHHHHHTTSSSCCCCEEEEECCTTTTSSCEEEEE
T ss_pred             EEEcCCcccceEEEEEEC-CceEEEEeCCCCCCCCCCcHHHHHHHHHHHHHhhcCCCCCCcEEEECCCCCccCCeEEEEE
Confidence            467889999999998874 4577888665  322 122356788999999986  45678888888765   45899999


Q ss_pred             cCCCCCC
Q 047066          181 FVKLPTI  187 (256)
Q Consensus       181 ~~~~~~l  187 (256)
                      |+++..+
T Consensus       122 ~v~G~~l  128 (359)
T 3dxp_A          122 FVSGRVL  128 (359)
T ss_dssp             CCCCBCC
T ss_pred             ecCCeec
Confidence            9998766

>4gkh_A Aminoglycoside 3'-phosphotransferase APHA1-IAB; pyrazolopyrimidine, 1-Na-PP1, bumped kinase inhibitor, BKI, kinase inhibitor; HET: KAN 0J9; 1.86A {Acinetobacter baumannii} PDB: 4feu_A* 4few_A* 4fex_A* 4fev_A* 4gki_A* 4ej7_A* 3r78_A*

Probab=97.84  E-value=0.00022  Score=57.72  Aligned_cols=74  Identities=12%  Similarity=0.066  Sum_probs=54.6

Q ss_pred             eeeeeCce-EEEEEEEC-CCcEEEEEEecccChhHHHHHHHHHHHHHhC-CCCcccceeeEEEECCEEEEEEecCCCCCC
Q 047066          111 MIGRGGYG-TVFLGSLS-DNKAIAIKKSRIVYQSQIEQCINKVVVLSQI-NHRNVVGLLGCCLETEVPLLVNEFVKLPTI  187 (256)
Q Consensus       111 ~lg~G~~g-~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~lv~e~~~~~~l  187 (256)
                      .+..|..+ .||+.... ++..+.+|.-..   .....+.+|...|+.+ .+-.+.++++++...+..+++||++++.++
T Consensus        31 ~~~~G~S~~~v~rl~~~~~~~~~~lk~~~~---~~~~~~~~E~~~l~~l~~~vPVP~v~~~~~~~~~~~lvme~l~G~~~  107 (272)
T 4gkh_A           31 RDNVGQSGATIYRLYGKPNAPELFLKHGKG---SVANDVTDEMVRLNWLTAFMPLPTIKHFIRTPDDAWLLTTAIPGKTA  107 (272)
T ss_dssp             EEECSSSSCEEEEEECCTTCCCEEEEEEET---HHHHHHHHHHHHHHHHTTTSCCCCEEEEEEETTEEEEEEECCCSEEH
T ss_pred             EccCCCcCCeEEEEEecCCCeEEEEEECCC---CCHhHHHHHHHHHHHhccCCCcCeEEEEEEECCeEEEEEEeeCCccc
Confidence            34455554 68887654 466788887543   2345678899999888 455577889999999999999999998554

>3f7w_A Putative fructosamine-3-kinase; YP_290396.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI-2; 1.85A {Thermobifida fusca YX}

Probab=97.80  E-value=0.00036  Score=57.23  Aligned_cols=81  Identities=14%  Similarity=0.023  Sum_probs=56.7

Q ss_pred             CCCcccceeeeeCceEEEEEEECCCcEEEEEEecccChhHHHHHHHHHHHHHhCC-CC--cccceeeEEEECCEEEEEEe
Q 047066          104 NNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQIN-HR--NVVGLLGCCLETEVPLLVNE  180 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-h~--niv~l~~~~~~~~~~~lv~e  180 (256)
                      ....-.+.+|.|..+.||+....+|+.+.+|............+..|+..|+.|. ..  .+.+++++  ..  .+++||
T Consensus        15 ~~v~~v~~~g~G~~~~vyrv~l~DG~~~~vK~~~~~~~~~~~~~~~Ea~~L~~L~~~~~vpvP~v~~~--~~--~~lv~e   90 (288)
T 3f7w_A           15 REVAAVAERGHSHRWHLYRVELADGTPLFVKALPDDAPALDGLFRAEALGLDWLGRSFGSPVPQVAGW--DD--RTLAME   90 (288)
T ss_dssp             CCEEEEEEEEEETTEEEEEEEETTSCEEEEEECCTTCCCCTTHHHHHHHHHHHHTCSTTCCSCCEEEE--ET--TEEEEE
T ss_pred             CCeEEEEecCCCCCeEEEEEEECCCCEEEEEEeCCCCcchhhHHHHHHHHHHHHHhhCCCCcceEEec--cC--ceEEEE
Confidence            3445557899999999999999899999999865443333356778999998884 32  23444443  22  468899


Q ss_pred             cCCCCCCC
Q 047066          181 FVKLPTIS  188 (256)
Q Consensus       181 ~~~~~~l~  188 (256)
                      |++.+...
T Consensus        91 ~l~~~~~~   98 (288)
T 3f7w_A           91 WVDERPPT   98 (288)
T ss_dssp             CCCCCCCC
T ss_pred             eecccCCC
Confidence            99775543

>3jr1_A Putative fructosamine-3-kinase; YP_719053.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 2.32A {Haemophilus somnus 129PT}

Probab=97.37  E-value=0.0019  Score=53.73  Aligned_cols=73  Identities=12%  Similarity=0.060  Sum_probs=57.4

Q ss_pred             cceeeeeCceEEEEEEECCCcEEEEEEecccChhHHHHHHHHHHHHHhCC---CCcccceeeEEEECCEEEEEEecCCCC
Q 047066          109 DRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQIN---HRNVVGLLGCCLETEVPLLVNEFVKLP  185 (256)
Q Consensus       109 ~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~---h~niv~l~~~~~~~~~~~lv~e~~~~~  185 (256)
                      .+.++.|....+|+... ++..+.+|.....   ....+..|...|+.|.   ...+.+++.++...+..+++||++++.
T Consensus        41 ~~~l~gG~~n~~y~v~~-~~~~~vlK~~~~~---~~~~~~~E~~~L~~L~~~~~v~VP~vl~~~~~~g~~~lvme~l~G~  116 (312)
T 3jr1_A           41 KEKLYSGEMNEIWLIND-EVQTVFVKINERS---YRSMFRAEADQLALLAKTNSINVPLVYGIGNSQGHSFLLLEALNKS  116 (312)
T ss_dssp             EEEECCSSSSEEEEEES-SSCEEEEEEEEGG---GHHHHHHHHHHHHHHHHTTSSBCCCEEEEEECSSEEEEEEECCCCC
T ss_pred             eEEeCCccceeeeEEEE-CCCeEEEEeCCcc---cHHHHHHHHHHHHHHHhhCCCCcceEEEEeecCCceEEEEEeccCC
Confidence            35788899999999876 5678888876532   3466888999988883   366888898888888899999999873

>3sg8_A APH(2'')-ID; antibiotic resistance enzyme, transferase, aminoglycoside, phosphorylation, transferase-antibiotic complex; HET: TOY; 1.80A {Enterococcus casseliflavus} PDB: 3sg9_A* 3n4v_A 3n4t_A 3n4u_A 3r81_A* 3r80_A* 3r7z_A* 3r82_A* 3vcq_A* 4dbx_A 4de4_A* 4dfb_A* 4dfu_A* 4dt9_A* 4dt8_A* 4dtb_A* 3sgc_A 4dta_A* 3lzh_A

Probab=97.36  E-value=0.00076  Score=55.69  Aligned_cols=73  Identities=14%  Similarity=0.135  Sum_probs=49.0

Q ss_pred             ceeeeeCceEEEEEEECCCcEEEEEEecccChhHHHHHHHHHHHHHhC-CCCcc--cceeeEEEECC---EEEEEEecCC
Q 047066          110 RMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQI-NHRNV--VGLLGCCLETE---VPLLVNEFVK  183 (256)
Q Consensus       110 ~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~ni--v~l~~~~~~~~---~~~lv~e~~~  183 (256)
                      +.++.|....||+..    ..+++|.....  .....+.+|..+++.+ .+..+  ..++......+   ..|+|||+++
T Consensus        26 ~~~~~G~~n~v~~v~----~~~vlR~~~~~--~~~~~~~~E~~~l~~l~~~~~v~vP~~~~~~~~~~~~~~~~~vm~~i~   99 (304)
T 3sg8_A           26 EISGEGNDCIAYEIN----RDFIFKFPKHS--RGSTNLFNEVNILKRIHNKLPLPIPEVVFTGMPSETYQMSFAGFTKIK   99 (304)
T ss_dssp             CEEEECSSEEEEEST----TSEEEEEESSH--HHHHHHHHHHHHHHHHTTSSSSCCCCEEEECCCCSSCSCSCEEEECCC
T ss_pred             EecCCCCcceEEEEC----CEEEEEecCCc--chHHHHHHHHHHHHHHHhcCCCCCCceEeecCCCCCCCcceEEEcccC
Confidence            468899999998753    46788875432  3446788999999888 44333  34444333222   4588999999


Q ss_pred             CCCCC
Q 047066          184 LPTIS  188 (256)
Q Consensus       184 ~~~l~  188 (256)
                      +.++.
T Consensus       100 G~~l~  104 (304)
T 3sg8_A          100 GVPLT  104 (304)
T ss_dssp             CEECC
T ss_pred             CeECC
Confidence            96665

>3tdw_A Gentamicin resistance protein; kinase, phosphoryl transfer, antibiotic resistance, transfer; HET: GDP; 1.70A {Enterococcus gallinarum} PDB: 3tdv_A*

Probab=97.31  E-value=0.0054  Score=50.69  Aligned_cols=72  Identities=13%  Similarity=0.084  Sum_probs=51.2

Q ss_pred             ceeeeeCceEEEEEEECCCcEEEEEEecccChhHHHHHHHHHHHHHhCCCC---cccceeeEEE-ECCEEEEEEecCCCC
Q 047066          110 RMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHR---NVVGLLGCCL-ETEVPLLVNEFVKLP  185 (256)
Q Consensus       110 ~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~---niv~l~~~~~-~~~~~~lv~e~~~~~  185 (256)
                      +.++.|....||+.    +..+++|...  .......+.+|..+|+.+.+.   .+.+++.++. ..+..+++||+++|.
T Consensus        25 ~~l~~G~~n~v~~v----g~~~VlR~~~--~~~~~~~~~~E~~~L~~L~~~~~v~VP~~~~~~~~~~g~~~~v~e~i~G~   98 (306)
T 3tdw_A           25 ESLGEGFRNYAILV----NGDWVFRFPK--SQQGADELNKEIQLLPLLVGCVKVNIPQYVYIGKRSDGNPFVGYRKVQGQ   98 (306)
T ss_dssp             EEEEECSSEEEEEE----TTTEEEEEES--SHHHHHHHHHHHHHHHHHTTTCSSBCCCEEEEEECTTSCEEEEEECCCSE
T ss_pred             eecCCCcceeEEEE----CCEEEEEecC--CchHHHHHHHHHHHHHHHHhcCCCCCCCeEeecccCCCceEEEEeccCCe
Confidence            46778888889877    5667888742  233456788999999999642   3556666664 345678999999885


Q ss_pred             CC
Q 047066          186 TI  187 (256)
Q Consensus       186 ~l  187 (256)
                      .+
T Consensus        99 ~l  100 (306)
T 3tdw_A           99 IL  100 (306)
T ss_dssp             EC
T ss_pred             EC
Confidence            54

>2q83_A YTAA protein; 2635576, structural genomics, joint center for structu genomics, JCSG, protein structure initiative, PSI-2, transf; HET: ADN CIT UNL; 2.50A {Bacillus subtilis}

Probab=96.61  E-value=0.028  Score=46.63  Aligned_cols=71  Identities=8%  Similarity=0.129  Sum_probs=39.3

Q ss_pred             ceeeeeCceEEEEEEECCCcEEEEEEecccChhHHHHHHHHHHHHHhCC-----CCccccee-e--EEEECCEEEEEEec
Q 047066          110 RMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQIN-----HRNVVGLL-G--CCLETEVPLLVNEF  181 (256)
Q Consensus       110 ~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-----h~niv~l~-~--~~~~~~~~~lv~e~  181 (256)
                      +.++.|....||+....++ .+++|.... ..   .....|..++..|.     .|.++.-. |  +....+..++++||
T Consensus        38 ~~l~gG~~n~~~~v~~~~~-~~vlk~~~~-~~---~~~~~e~~~l~~L~~~g~~vp~~~~~~~g~~~~~~~~~~~~l~~~  112 (346)
T 2q83_A           38 DVIQGNQMALVWKVHTDSG-AVCLKRIHR-PE---KKALFSIFAQDYLAKKGMNVPGILPNKKGSLYSKHGSFLFVVYDW  112 (346)
T ss_dssp             EECC----CEEEEEEETTE-EEEEEEECS-CH---HHHHHHHHHHHHHHHHTCSSCCBCCCTTSCSCEEETTEEEEEEEC
T ss_pred             eeccccccCcEEEEEeCCC-CEEEEecCC-CH---HHHHHHHHHHHHHHHcCCCCCceeecCCCCEEEEECCEEEEEEEe
Confidence            3455567789999887544 588888764 22   22334555555442     24443311 1  12346778999999


Q ss_pred             CCCC
Q 047066          182 VKLP  185 (256)
Q Consensus       182 ~~~~  185 (256)
                      +++.
T Consensus       113 i~G~  116 (346)
T 2q83_A          113 IEGR  116 (346)
T ss_dssp             CCCB
T ss_pred             ecCc
Confidence            9873

>3ats_A Putative uncharacterized protein; hypothetical protein, putative aminoglycoside phosphortransf transferase; 1.67A {Mycobacterium tuberculosis} PDB: 3att_A*

Probab=96.26  E-value=0.0072  Score=50.82  Aligned_cols=78  Identities=6%  Similarity=-0.021  Sum_probs=51.7

Q ss_pred             cee-eeeCceEEEEEEEC-------CCcEEEEEEecccC---hhHHHHHHHHHHHHHhCC-C--CcccceeeEEEEC---
Q 047066          110 RMI-GRGGYGTVFLGSLS-------DNKAIAIKKSRIVY---QSQIEQCINKVVVLSQIN-H--RNVVGLLGCCLET---  172 (256)
Q Consensus       110 ~~l-g~G~~g~V~~~~~~-------~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~-h--~niv~l~~~~~~~---  172 (256)
                      +.| +.|....+|+....       ++..+++|......   ......+.+|+.+++.+. +  -.+.+++.++.+.   
T Consensus        26 ~~l~~~G~~n~~y~v~~~~~~~~~~~~~~~vlR~~~~~~~~~~~~~~~~~~E~~~l~~L~~~~~vpvP~v~~~~~~~~~~  105 (357)
T 3ats_A           26 SGVDSTGMSSETIILTARWQQDGRSIQQKLVARVAPAAEDVPVFPTYRLDHQFEVIRLVGELTDVPVPRVRWIETTGDVL  105 (357)
T ss_dssp             EEECTTSSEEEEEEEEEEEEETTEEEEEEEEEEECCCGGGCCSSSCCCHHHHHHHHHHHHHHCCSCCCCEEEEECSSTTT
T ss_pred             EECCCCCccceEEEEEEecccCCCCCCceEEEEeCCCCCccccCchhHHHHHHHHHHHHhhcCCCCCCcEEEEccCCCcc
Confidence            466 77878889987753       25678888654322   001145678888888883 3  3567788777654   


Q ss_pred             CEEEEEEecCCCCCC
Q 047066          173 EVPLLVNEFVKLPTI  187 (256)
Q Consensus       173 ~~~~lv~e~~~~~~l  187 (256)
                      +..+++||++++..+
T Consensus       106 g~~~~v~e~l~G~~l  120 (357)
T 3ats_A          106 GTPFFLMDYVEGVVP  120 (357)
T ss_dssp             SSCEEEEECCCCBCC
T ss_pred             CCceEEEEecCCCCh
Confidence            357899999987543

>2ppq_A HSK, HK, homoserine kinase; structural genomics, MCSG, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: d.144.1.6

Probab=95.92  E-value=0.17  Score=41.56  Aligned_cols=74  Identities=9%  Similarity=-0.007  Sum_probs=40.9

Q ss_pred             ceeeeeCceEEEEEEECCCcEEEEEEecccChhHHHHHHHHHHHHHhCCCCc--ccceee------EEEECCEEEEEEec
Q 047066          110 RMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRN--VVGLLG------CCLETEVPLLVNEF  181 (256)
Q Consensus       110 ~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~n--iv~l~~------~~~~~~~~~lv~e~  181 (256)
                      +.++.|....+|+....++ .+++|......  ..+.+..|..++..+...+  +.+++.      +....+..++++++
T Consensus        28 ~~i~~G~~n~~~~v~~~~g-~~vlk~~~~~~--~~~~l~~e~~~l~~L~~~g~~vP~~~~~~~g~~~~~~~g~~~~l~~~  104 (322)
T 2ppq_A           28 KGIAEGVENSNFLLHTTKD-PLILTLYEKRV--EKNDLPFFLGLMQHLAAKGLSCPLPLPRKDGELLGELSGRPAALISF  104 (322)
T ss_dssp             EEECC---EEEEEEEESSC-CEEEEEECC-----CCHHHHHHHHHHHHHHTTCCCCCBCCBTTCCSCEEETTEEEEEEEC
T ss_pred             eccCCCcccceEEEEeCCc-cEEEEEeCCCC--CHHHHHHHHHHHHHHHHCCCCCCcccCCCCCCEEEEECCEEEEEEEe
Confidence            3566677788999887555 67788765421  1133456777776663111  233331      11234667899999


Q ss_pred             CCCCC
Q 047066          182 VKLPT  186 (256)
Q Consensus       182 ~~~~~  186 (256)
                      +++..
T Consensus       105 l~G~~  109 (322)
T 2ppq_A          105 LEGMW  109 (322)
T ss_dssp             CCCBC
T ss_pred             CCCcC
Confidence            98743

>1zyl_A Hypothetical protein YIHE; putative protein kinase, structural genomics, PSI, protein structure initiative; 2.80A {Escherichia coli} SCOP: d.144.1.6

Probab=95.76  E-value=0.13  Score=42.31  Aligned_cols=73  Identities=12%  Similarity=-0.041  Sum_probs=45.7

Q ss_pred             ceeeeeCceEEEEEEECCCcEEEEEEecccChhHHHHHHHHHHHHHhCC-C-CcccceeeE-----EEECCEEEEEEecC
Q 047066          110 RMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQIN-H-RNVVGLLGC-----CLETEVPLLVNEFV  182 (256)
Q Consensus       110 ~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-h-~niv~l~~~-----~~~~~~~~lv~e~~  182 (256)
                      ..++ |....||+....+|..+++|...... ...+.+..|..++..+. + -.+.+++..     ....+..++++|++
T Consensus        32 ~~l~-g~~n~~y~v~~~~g~~~vlK~~~~~~-~~~~~~~~E~~~~~~L~~~g~~vp~~~~~~g~~~~~~~g~~~~l~~~i  109 (328)
T 1zyl_A           32 TPLN-SYENRVYQFQDEDRRRFVVKFYRPER-WTADQILEEHQFALQLVNDEVPVAAPVAFNGQTLLNHQGFYFAVFPSV  109 (328)
T ss_dssp             EEEC-CSSSEEEEECCTTCCCEEEEEECTTT-SCHHHHHHHHHHHHHHHHTTCSBCCCCCBTTBSCEEETTEEEEEEECC
T ss_pred             Eeec-CcccceEEEEcCCCCEEEEEEcCCCC-CCHHHHHHHHHHHHHHHHcCCeecceeecCCcEEEEECCEEEEEEEec
Confidence            3455 77778998877667789999876321 12245667888777763 2 123334332     22356678899999


Q ss_pred             CC
Q 047066          183 KL  184 (256)
Q Consensus       183 ~~  184 (256)
                      ++
T Consensus       110 ~G  111 (328)
T 1zyl_A          110 GG  111 (328)
T ss_dssp             CC
T ss_pred             CC
Confidence            77

>3feg_A Choline/ethanolamine kinase; non-protein kinase, choline kinase, structural genomics CONS SGC, hemicholinium-3, phosphorylation; HET: HC7 ADP AMP; 1.30A {Homo sapiens} PDB: 3lq3_A* 2ig7_A*

Probab=95.11  E-value=0.087  Score=44.93  Aligned_cols=72  Identities=11%  Similarity=0.160  Sum_probs=41.1

Q ss_pred             ceeeeeCceEEEEEEEC--------CCcEEEEEEecccChhHHHHHHHHHHHHHhCC-CCcccceeeEEEECCEEEEEEe
Q 047066          110 RMIGRGGYGTVFLGSLS--------DNKAIAIKKSRIVYQSQIEQCINKVVVLSQIN-HRNVVGLLGCCLETEVPLLVNE  180 (256)
Q Consensus       110 ~~lg~G~~g~V~~~~~~--------~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~l~~~~~~~~~~~lv~e  180 (256)
                      +.+.-|-...+|++...        ++..+.++.-... ........+|..+++.+. +.-..++++.+.  +  .+|+|
T Consensus        56 ~~lsGG~TN~~y~v~~~~~~~~~~~~~~~~vlR~~g~~-~~~~~~~~rE~~vl~~L~~~gv~P~ll~~~~--~--g~v~e  130 (379)
T 3feg_A           56 YPVSGGLSNLLFRCSLPDHLPSVGEEPREVLLRLYGAI-LQGVDSLVLESVMFAILAERSLGPQLYGVFP--E--GRLEQ  130 (379)
T ss_dssp             EEC-----CCEEEEECCTTSCCCSSCCSEEEEEECC----CCHHHHHHHHHHHHHHHHTTSSCCEEEEET--T--EEEEE
T ss_pred             EEcCCcccccEEEEEeCCCccccCCCCCeEEEEECCCc-cchHHHHHHHHHHHHHHHhcCCCCeEEEEcC--C--ccEEE
Confidence            35555666778988764        2467888864221 122355668999988884 333355665543  3  28999


Q ss_pred             cCCCCC
Q 047066          181 FVKLPT  186 (256)
Q Consensus       181 ~~~~~~  186 (256)
                      |+++.+
T Consensus       131 ~i~G~~  136 (379)
T 3feg_A          131 YIPSRP  136 (379)
T ss_dssp             CCSEEE
T ss_pred             EecCcc
Confidence            998733

>3dxq_A Choline/ethanolamine kinase family protein; NP_106042.1, STR genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 2.55A {Mesorhizobium loti}

Probab=94.69  E-value=0.089  Score=43.01  Aligned_cols=72  Identities=14%  Similarity=0.115  Sum_probs=42.9

Q ss_pred             cceeeeeCceEEEEEEECCCcEEEEEEecccChhHHHHHHHHHHHHHhCCCCcc-cceeeEEEECCEEEEEEecC-CCCC
Q 047066          109 DRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNV-VGLLGCCLETEVPLLVNEFV-KLPT  186 (256)
Q Consensus       109 ~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~ni-v~l~~~~~~~~~~~lv~e~~-~~~~  186 (256)
                      .+.|+.|....+|+.     ..+.+|......... -...+|...++.+...++ .++++.  ..+.-++++||+ ++.+
T Consensus        23 i~~l~gG~tN~~~~~-----~~~vlR~~~~~~~~~-~~r~~E~~~l~~l~~~g~~P~~~~~--~~~~~~~v~e~i~~g~~   94 (301)
T 3dxq_A           23 PLERLGGLTNLVFRA-----GDLCLRIPGKGTEEY-INRANEAVAAREAAKAGVSPEVLHV--DPATGVMVTRYIAGAQT   94 (301)
T ss_dssp             CEEEESCSSEEEEEE-----TTEEEEEECC----C-CCHHHHHHHHHHHHHTTSSCCEEEE--CTTTCCEEEECCTTCEE
T ss_pred             eeEcCCcccccccee-----eeEEEECCCCCccce-eCHHHHHHHHHHHHHcCCCCceEEE--ECCCCEEEEeecCCCcc
Confidence            467888888899988     457777654321111 122467777777642223 455543  333356899999 7766


Q ss_pred             CC
Q 047066          187 IS  188 (256)
Q Consensus       187 l~  188 (256)
                      +.
T Consensus        95 l~   96 (301)
T 3dxq_A           95 MS   96 (301)
T ss_dssp             CC
T ss_pred             CC
Confidence            64

>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A

Probab=94.45  E-value=0.015  Score=32.81  Aligned_cols=27  Identities=11%  Similarity=0.105  Sum_probs=12.9

Q ss_pred             ecccccchhhHHHHHHHHHHHHHHHhh
Q 047066           26 NFTSRCWHTLCGCAVGSSWLYSVLKKR   52 (256)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~   52 (256)
                      .++++++++++.+++++.+.++.+||+
T Consensus        13 ~Ia~~vVGvll~vi~~l~~~~~~RRR~   39 (44)
T 2jwa_A           13 SIISAVVGILLVVVLGVVFGILIKRRQ   39 (44)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             chHHHHHHHHHHHHHHHHHHhheehhh
Confidence            345556664444444444444444333

>3i1a_A Spectinomycin phosphotransferase; protein kinase, aminoglycoside phosphotransferase, antibiotic resistance; HET: MES PG4; 1.70A {Legionella pneumophila} PDB: 3i0q_A* 3i0o_A* 3q2m_A*

Probab=94.44  E-value=0.36  Score=40.23  Aligned_cols=25  Identities=24%  Similarity=0.418  Sum_probs=22.6

Q ss_pred             ccCCCcEEEcCCCcEEEEecCCcee
Q 047066          202 DIKSINILLDDNYTTKVCDFGASKL  226 (256)
Q Consensus       202 dlk~~NiLi~~~~~~ki~DFGla~~  226 (256)
                      |+.+.|+++++++.+.+.||+.+..
T Consensus       212 D~~~~N~l~~~~~~~~~iD~e~~~~  236 (339)
T 3i1a_A          212 DIHAGNVLVGNEESIYIIDWDEPML  236 (339)
T ss_dssp             CCCGGGEEECGGGCEEECCCSSCEE
T ss_pred             CCCcCCEEEeCCCeEEEEECCCCee
Confidence            9999999999888899999988764

>1nw1_A Choline kinase (49.2 KD); phospholipid synthesis, protein kinase fold, transferase; 2.02A {Caenorhabditis elegans} SCOP: d.144.1.8

Probab=93.91  E-value=0.21  Score=43.20  Aligned_cols=69  Identities=16%  Similarity=0.204  Sum_probs=44.6

Q ss_pred             ceeeeeCceEEEEEEECC--------CcEEEEEEecccChhHHHHHHHHHHHHHhCCCCcc-cceeeEEEECCEEEEEEe
Q 047066          110 RMIGRGGYGTVFLGSLSD--------NKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNV-VGLLGCCLETEVPLLVNE  180 (256)
Q Consensus       110 ~~lg~G~~g~V~~~~~~~--------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~ni-v~l~~~~~~~~~~~lv~e  180 (256)
                      +.|+.|....+|++...+        +..+.+|.......  .+.+..|..+++.+...++ .++++.+.  +  .+++|
T Consensus        79 ~~l~gG~tN~~y~v~~~~~~~~~~~~~~~~vlRi~~~~~~--~~~li~E~~~l~~L~~~g~~P~l~~~~~--~--g~v~e  152 (429)
T 1nw1_A           79 SRIKGGMSNMLFLCRLSEVYPPIRNEPNKVLLRVYFNPET--ESHLVAESVIFTLLSERHLGPKLYGIFS--G--GRLEE  152 (429)
T ss_dssp             EEECCCTTEEEEEEEECTTSCCSSSCCSEEEEEEECSCCC--HHHHHHHHHHHHHHHHTTSSSCEEEEET--T--EEEEC
T ss_pred             EEeCCCcccceEEEEeCCCccccCCCCceEEEEEeCCCCc--HHHHHHHHHHHHHHHhCCCCCcEEEEeC--C--CEEEE
Confidence            467777778899998653        46788887643111  1445579988888843333 56666543  3  37889


Q ss_pred             cCCC
Q 047066          181 FVKL  184 (256)
Q Consensus       181 ~~~~  184 (256)
                      |+++
T Consensus       153 ~l~G  156 (429)
T 1nw1_A          153 YIPS  156 (429)
T ss_dssp             CCCE
T ss_pred             EeCC
Confidence            9876

>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}

Probab=93.81  E-value=0.036  Score=31.41  Aligned_cols=28  Identities=11%  Similarity=0.004  Sum_probs=11.8

Q ss_pred             ecccccchhhHHHHHHHHHHHHHHHhhh
Q 047066           26 NFTSRCWHTLCGCAVGSSWLYSVLKKRN   53 (256)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~   53 (256)
                      .|++.+++-++++++++...++.+|||+
T Consensus        12 ~IA~gVVgGv~~~~ii~~~~~~~~RRr~   39 (44)
T 2ks1_B           12 SIATGMVGALLLLLVVALGIGLFMRRRH   39 (44)
T ss_dssp             SSTHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             eEEeehhHHHHHHHHHHHHHHHHhhhhH
Confidence            3444445434443333333344444443

>2olc_A MTR kinase, methylthioribose kinase; kinase ADP-2HO complex, transferase; HET: CPS ADP; 2.00A {Bacillus subtilis} SCOP: d.144.1.6 PDB: 2pu8_A* 2pui_A* 2pul_A* 2pun_A* 2pup_A*

Probab=93.00  E-value=0.18  Score=42.86  Aligned_cols=74  Identities=22%  Similarity=0.203  Sum_probs=48.1

Q ss_pred             cceeeeeCceEEEEEEEC-CCcEEEEEEecccCh-------hHHHHHHHHHHHHHhCC-C-Cc-ccceeeEEEECCEEEE
Q 047066          109 DRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVYQ-------SQIEQCINKVVVLSQIN-H-RN-VVGLLGCCLETEVPLL  177 (256)
Q Consensus       109 ~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~-------~~~~~~~~E~~~l~~l~-h-~n-iv~l~~~~~~~~~~~l  177 (256)
                      .+.+|.|..+.||++... ++..+++|.......       ...+++..|.++++.+. + |. +.+++.+  +.+..++
T Consensus        35 ~~~lg~G~~n~vyrv~~~~~~~~~vvK~~~~~~r~~~~~~~~~~~r~~~E~~~L~~l~~~~~~~vP~~~~~--d~~~~~l  112 (397)
T 2olc_A           35 CQEIGDGNLNYVFHIYDQEHDRALIIKQAVPYAKVVGESWPLTIDRARIESSALIRQGEHVPHLVPRVFYS--DTEMAVT  112 (397)
T ss_dssp             EEECCSSSSEEEEEEEC----CEEEEEEECCC-------CCCCTTHHHHHHHHHHHHHTTCGGGSCCEEEE--ETTTTEE
T ss_pred             EEECCCCceEEEEEEEECCCCcEEEEEecchhhcccCCCCcCcHHHHHHHHHHHHHhhhhCCCCcCeEEEE--cCCccEE
Confidence            357899999999999753 467899997643211       12245678999988773 2 33 3455543  4455689


Q ss_pred             EEecCCC
Q 047066          178 VNEFVKL  184 (256)
Q Consensus       178 v~e~~~~  184 (256)
                      +||++++
T Consensus       113 vmE~l~g  119 (397)
T 2olc_A          113 VMEDLSH  119 (397)
T ss_dssp             EECCCTT
T ss_pred             EEEeCCC
Confidence            9999976

>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A

Probab=92.74  E-value=0.027  Score=30.89  Aligned_cols=28  Identities=14%  Similarity=0.030  Sum_probs=18.6

Q ss_pred             eecccccchhhHHHHHHHHHHHHHHHhh
Q 047066           25 FNFTSRCWHTLCGCAVGSSWLYSVLKKR   52 (256)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~   52 (256)
                      +.++++++++++++++++.+.++.||||
T Consensus        11 GaIAGiVvG~v~gv~li~~l~~~~~rrr   38 (38)
T 2k1k_A           11 GEIVAVIFGLLLGAALLLGILVFRSRRA   38 (38)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred             CceeeeehHHHHHHHHHHHHHHHHeecC
Confidence            3456667777777777777677766653

>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}

Probab=92.54  E-value=0.045  Score=30.96  Aligned_cols=26  Identities=4%  Similarity=-0.037  Sum_probs=10.1

Q ss_pred             cccccchhhHHHHHHHHHHHHHHHhh
Q 047066           27 FTSRCWHTLCGCAVGSSWLYSVLKKR   52 (256)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~   52 (256)
                      |++.+++-++++++++...++.+|||
T Consensus        12 IA~gVVgGv~~v~ii~~~~~~~~RRR   37 (44)
T 2l2t_A           12 IAAGVIGGLFILVIVGLTFAVYVRRK   37 (44)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             EEEeehHHHHHHHHHHHHHHHHhhhh
Confidence            34444443333333333333334333

>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A

Probab=90.55  E-value=0.034  Score=48.83  Aligned_cols=61  Identities=5%  Similarity=0.031  Sum_probs=18.3

Q ss_pred             ccceeeeeCceEEEEEEECC-CcEEEE------EEeccc--ChhHHHHHHHHHHHHHhCCCCcccceeeEEEE
Q 047066          108 YDRMIGRGGYGTVFLGSLSD-NKAIAI------KKSRIV--YQSQIEQCINKVVVLSQINHRNVVGLLGCCLE  171 (256)
Q Consensus       108 ~~~~lg~G~~g~V~~~~~~~-~~~vav------K~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~  171 (256)
                      +.+.+|   ||.||+|.+.. ..+||+      |..+..  ..+....+.+|..++..++|||+++.+++...
T Consensus       146 l~~~lG---fG~v~~g~~~~~~~~Vav~~~~~~K~~~~~~~~~e~~~~~~rea~l~~~~~H~niv~~h~f~~~  215 (463)
T 3cxl_A          146 IYEHVG---YTTLNREPAYKKHMPVLKETHDERDSTGQDGVSEKRLTSLVRRATLKENEQIPKYEKIHNFKVH  215 (463)
T ss_dssp             STTTSS---BCCC---------CCBGGGC-----------------------------------CBCCCEEEE
T ss_pred             ccccCC---chhhhcccccccCCchhhhhccCccccccccccccccccccccccccccccccccCCCcceEEe
Confidence            445666   99999999754 467888      655432  23344578889999999999999999887764

>2qg7_A Ethanolamine kinase PV091845; malaria, SGC, structural genomics consortium, transferase; 2.41A {Plasmodium vivax}

Probab=90.09  E-value=3.7  Score=35.73  Aligned_cols=70  Identities=11%  Similarity=0.032  Sum_probs=42.7

Q ss_pred             ceeeeeCceEEEEEEECC-CcEEEEEEecccChhHHHHHHHHHHHHHhCCCCcc-cceeeEEEECCEEEEEEecCCC
Q 047066          110 RMIGRGGYGTVFLGSLSD-NKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNV-VGLLGCCLETEVPLLVNEFVKL  184 (256)
Q Consensus       110 ~~lg~G~~g~V~~~~~~~-~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~ni-v~l~~~~~~~~~~~lv~e~~~~  184 (256)
                      +.|+.|-...+|++...+ +..+.+|.......... ...+|..++..|...++ .++++.+  .+  ..++||+++
T Consensus       114 ~~lsgG~tN~~y~v~~~~~~~~~vLRi~g~~~~~~i-dR~~E~~vl~~L~~~gl~P~ll~~~--~~--G~v~e~I~G  185 (458)
T 2qg7_A          114 QIINGGITNILIKVKDMSKQAKYLIRLYGPKTDEII-NREREKKISCILYNKNIAKKIYVFF--TN--GRIEEFMDG  185 (458)
T ss_dssp             EEECC--CEEEEEEEETTTTEEEEEEEECC-CCSCS-CHHHHHHHHHHHTTSSSBCCEEEEE--TT--EEEEECCCS
T ss_pred             EEcCCCeEeEEEEEEECCCCceEEEEECCCChhhhc-CHHHHHHHHHHHHhcCCCCCEEEEe--CC--eEEEEeeCC
Confidence            466667778899988754 47788886533221111 12478888888854444 5666665  23  258999876

>3c5i_A Choline kinase; choline, kinase, malaria, transferase, structural genomics, structural genomics consortium; 2.20A {Plasmodium knowlesi} PDB: 3fi8_A*

Probab=89.79  E-value=1.3  Score=37.00  Aligned_cols=70  Identities=13%  Similarity=0.119  Sum_probs=39.5

Q ss_pred             ceeeeeCceEEEEEEECC---------CcEEEEEEecccChhHHHHHHHHHHHHHhCCCCc-ccceeeEEEECCEEEEEE
Q 047066          110 RMIGRGGYGTVFLGSLSD---------NKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRN-VVGLLGCCLETEVPLLVN  179 (256)
Q Consensus       110 ~~lg~G~~g~V~~~~~~~---------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~n-iv~l~~~~~~~~~~~lv~  179 (256)
                      +.++.|..-.+|+....+         +..+.+|....... .......|..+++.+...+ ..++++..  .+  ++++
T Consensus        39 ~~l~~G~~N~~y~v~~~~~~~~~~~~~~~~~vlRi~~~~~~-~~~~~~~E~~~l~~L~~~g~~P~~~~~~--~~--~~v~  113 (369)
T 3c5i_A           39 KQILSGLTNQLFEVGLKEETANNYNSIRTRVLFRIYGKHVD-ELYNTISEFEVYKTMSKYKIAPQLLNTF--NG--GRIE  113 (369)
T ss_dssp             EEC----CCEEEEEEECHHHHTTCTTSCCEEEEEECCTTGG-GTSCHHHHHHHHHHHHHTTSSCCEEEEE--TT--EEEE
T ss_pred             EEeCCcccceEEEEEeCCCCcccccCCCceEEEEecCCCcc-ceecHHHHHHHHHHHHhcCCCCceEEec--CC--cEEE
Confidence            456667777899888643         25777776543221 1112357888888774223 34565443  22  6789


Q ss_pred             ecCCC
Q 047066          180 EFVKL  184 (256)
Q Consensus       180 e~~~~  184 (256)
                      ||+++
T Consensus       114 e~i~G  118 (369)
T 3c5i_A          114 EWLYG  118 (369)
T ss_dssp             ECCCS
T ss_pred             EEecC
Confidence            99877

>2pyw_A Uncharacterized protein; 5-methylthioribose kinase, plant methionine recycling, refol transferase; HET: SR1 ADP; 1.90A {Arabidopsis thaliana}

Probab=83.35  E-value=0.38  Score=41.33  Aligned_cols=73  Identities=12%  Similarity=0.113  Sum_probs=43.7

Q ss_pred             cceeeeeCceEEEEEEECCCcEEEEEEeccc----Chh-----HHHHHHHHHHHHH-hCCCCcccceeeEEEECCEEEEE
Q 047066          109 DRMIGRGGYGTVFLGSLSDNKAIAIKKSRIV----YQS-----QIEQCINKVVVLS-QINHRNVVGLLGCCLETEVPLLV  178 (256)
Q Consensus       109 ~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~----~~~-----~~~~~~~E~~~l~-~l~h~niv~l~~~~~~~~~~~lv  178 (256)
                      .+.+|.|....||++.. ++..+++|...+.    ...     ....+..|+..+. ...+..+.+++.+.  .+..++|
T Consensus        39 i~~l~~G~~n~vyrv~~-~~~~~vvK~~~p~~~~~~~~~~~~~~~~~~E~e~l~~~~~~~~~~vP~v~~~~--~~~~~lv  115 (420)
T 2pyw_A           39 IKEVGDGNLNFVFIVVG-SSGSLVIKQALPYIRCIGESWPMTKERAYFEATTLRKHGNLSPDHVPEVYHFD--RTMALIG  115 (420)
T ss_dssp             EEECCCSSSCEEEEEEC-SSCEEEEEECCSBCTTTCTTSBCCTTHHHHHHHHHHHHHHHSGGGSCCEEEEE--TTTTEEE
T ss_pred             EEEccCCCcEEEEEEEc-CCceEEEEECchhhcccCcccccchhHHHHHHHHHHHHHhhCCCCCCeEEEEC--CCccEEE
Confidence            35788899999999865 5678999943221    111     2223333333222 22334566666655  5667899


Q ss_pred             EecC-CC
Q 047066          179 NEFV-KL  184 (256)
Q Consensus       179 ~e~~-~~  184 (256)
                      ||++ ++
T Consensus       116 ~e~l~~g  122 (420)
T 2pyw_A          116 MRYLEPP  122 (420)
T ss_dssp             ECCCCTT
T ss_pred             EeecCCc
Confidence            9999 65

>3csv_A Aminoglycoside phosphotransferase; YP_614837.1, phosphotransferase enzyme family, structural genomics, JOIN for structural genomics, JCSG; HET: MSE; 2.15A {Silicibacter SP}

Probab=81.61  E-value=0.51  Score=38.95  Aligned_cols=26  Identities=31%  Similarity=0.380  Sum_probs=22.6

Q ss_pred             hccCCCcEEEcCC----CcEEEEecCCcee
Q 047066          201 EDIKSINILLDDN----YTTKVCDFGASKL  226 (256)
Q Consensus       201 rdlk~~NiLi~~~----~~~ki~DFGla~~  226 (256)
                      +|+.+.||+++.+    ..+.|.||+.+..
T Consensus       188 gD~~~~Nil~~~~~~~~~~~~lIDf~~a~~  217 (333)
T 3csv_A          188 RDFHAQNLLWLPEREGLARVGVIDFQDAKL  217 (333)
T ss_dssp             SCCSGGGEEECTTSCGGGGEEECCCTTCEE
T ss_pred             CCcCcccEEeccCcCCCCCeEEEeCCCcCc
Confidence            4999999999874    6899999998874

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	256
d1qpca_	272	d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Hom	9e-30
d1uwha_	276	d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens)	2e-29
d1k2pa_	258	d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Hum	1e-28
d1sm2a_	263	d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Hu	2e-28
d1fmka3	285	d.144.1.7 (A:249-533) c-src tyrosine kinase {Human	4e-28
d1s9ja_	322	d.144.1.7 (A:) Dual specificity mitogen-activated	5e-28
d1opja_	287	d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mou	2e-26
d1u5ra_	309	d.144.1.7 (A:) Serine/threonine protein kinase TAO	2e-26
d1mp8a_	273	d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Huma	8e-26
d2jfla1	288	d.144.1.7 (A:21-308) STE20-like serine/threonine-p	2e-25
d2j4za1	263	d.144.1.7 (A:126-388) Aurora-related kinase 1 (aur	4e-25
d1uu3a_	288	d.144.1.7 (A:) 3-phosphoinositide dependent protei	4e-25
d1yhwa1	293	d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [	5e-25
d1jpaa_	299	d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mou	2e-24
d1r0pa_	311	d.144.1.7 (A:) Hepatocyte growth factor receptor,	2e-24
d1u59a_	285	d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Hum	3e-24
d1mqba_	283	d.144.1.7 (A:) epha2 receptor tyrosine kinase {Hum	5e-24
d1nvra_	271	d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {	5e-24
d1xbba_	277	d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human	1e-23
d1byga_	262	d.144.1.7 (A:) Carboxyl-terminal src kinase (csk)	1e-23
d1t4ha_	270	d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sa	4e-23
d1xkka_	317	d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-	6e-23
d1koaa2	350	d.144.1.7 (A:5915-6264) Twitchin, kinase domain {C	1e-22
d1lufa_	301	d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus n	3e-22
d1u46a_	273	d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Hum	8e-22
d2java1	269	d.144.1.7 (A:3-271) Serine/threonine-protein kinas	1e-21
d1fota_	316	d.144.1.7 (A:) cAMP-dependent PK, catalytic subuni	1e-21
d1fvra_	309	d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [	2e-21
d1rjba_	325	d.144.1.7 (A:) Fl cytokine receptor {Human (Homo s	3e-21
d1t46a_	311	d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens	3e-21
d1ua2a_	299	d.144.1.7 (A:) Cell division protein kinase 7, CDK	9e-21
d1o6la_	337	d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sap	9e-21
d1pmea_	345	d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapien	1e-20
d1koba_	352	d.144.1.7 (A:) Twitchin, kinase domain {California	2e-20
d1omwa3	364	d.144.1.7 (A:186-549) G-protein coupled receptor k	2e-20
d1vjya_	303	d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human	4e-20
d1ob3a_	286	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmod	1e-19
d1p4oa_	308	d.144.1.7 (A:) Insulin-like growth factor 1 recept	2e-19
d1a06a_	307	d.144.1.7 (A:) Calmodulin-dependent protein kinase	4e-19
d1o6ya_	277	d.144.1.7 (A:) Mycobacterial protein kinase PknB,	6e-19
d1xjda_	320	d.144.1.7 (A:) Protein kinase C, theta type {Human	6e-19
d1ywna1	299	d.144.1.7 (A:818-1166) Vascular endothelial growth	9e-19
d1gz8a_	298	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (H	2e-18
d1tkia_	321	d.144.1.7 (A:) Titin, kinase domain {Human (Homo s	3e-18
d1unla_	292	d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (H	7e-18
d1phka_	277	d.144.1.7 (A:) gamma-subunit of glycogen phosphory	2e-17
d3blha1	318	d.144.1.7 (A:8-325) Cell division protein kinase 9	2e-17
d1xwsa_	273	d.144.1.7 (A:) Proto-oncogene serine/threonine-pro	2e-16
d1jksa_	293	d.144.1.7 (A:) Death-associated protein kinase, Da	2e-16
d1blxa_	305	d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (H	6e-16
d1cm8a_	346	d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo s	1e-15
d1fgka_	299	d.144.1.7 (A:) Fibroblast growth factor receptor 1	1e-15
d1rdqe_	350	d.144.1.7 (E:) cAMP-dependent PK, catalytic subuni	1e-15
d3bqca1	328	d.144.1.7 (A:3-330) Protein kinase CK2, alpha subu	7e-15
d2b1pa1	355	d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3	9e-15
d1q5ka_	350	d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gs	1e-14
d1ckia_	299	d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus n	9e-14
d1vzoa_	322	d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5	4e-13
d2ozaa1	335	d.144.1.7 (A:51-385) MAP kinase activated protein	1e-12
d2gfsa1	348	d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sa	1e-12
d1csna_	293	d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast	2e-12
d1zara2	191	d.144.1.9 (A:91-281) Rio2 serine protein kinase C-	2e-08
d1q8ya_	362	d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces	4e-08

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]} Length = 272

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  110 bits (276), Expect = 9e-30
 Identities = 28/170 (16%), Positives = 70/170 (41%), Gaps = 27/170 (15%)

Query: 101 IATNNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHR 160
           +          +G G +G V++G  + +  +A+K  +    S  +  + +  ++ Q+ H+
Sbjct: 10  VPRETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSP-DAFLAEANLMKQLQHQ 68

Query: 161 NVVGLLGCCLETEVPLLVNEFV------------KLPTISWEVRIRIAAETAE------- 201
            +V L     +  +  ++ E++                ++    + +AA+ AE       
Sbjct: 69  RLVRLYAVVTQEPI-YIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEE 127

Query: 202 ------DIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTLGYY 245
                 D+++ NIL+ D  + K+ DFG ++L+  +E       +  + + 
Sbjct: 128 RNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEYTAREGAKFPIKWT 177

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 276

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  109 bits (274), Expect = 2e-29
 Identities = 35/170 (20%), Positives = 66/170 (38%), Gaps = 26/170 (15%)

Query: 101 IATNNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHR 160
           I        + IG G +GTV+ G    + A+ +         Q++   N+V VL +  H 
Sbjct: 5   IPDGQITVGQRIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHV 64

Query: 161 NVVGLLGCCLETEVPLLVNEFV-----------KLPTISWEVRIRIAAETAE-------- 201
           N++  +G     ++  +V ++                      I IA +TA+        
Sbjct: 65  NILLFMGYSTAPQL-AIVTQWCEGSSLYHHLHIIETKFEMIKLIDIARQTAQGMDYLHAK 123

Query: 202 -----DIKSINILLDDNYTTKVCDFGASKLVPIDE-TQLSTMVQGTLGYY 245
                D+KS NI L ++ T K+ DFG + +      +     + G++ + 
Sbjct: 124 SIIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSGSILWM 173

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]} Length = 258

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  107 bits (267), Expect = 1e-28
 Identities = 32/165 (19%), Positives = 64/165 (38%), Gaps = 25/165 (15%)

Query: 104 NNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVV 163
            +  + + +G G +G V  G       +AIK  +    S+ ++ I +  V+  ++H  +V
Sbjct: 4   KDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSMSE-DEFIEEAKVMMNLSHEKLV 62

Query: 164 GLLGCCLETEVPLLVNEFV-----------KLPTISWEVRIRIAAETAE----------- 201
            L G C +     ++ E++                  +  + +  +  E           
Sbjct: 63  QLYGVCTKQRPIFIITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLESKQFL 122

Query: 202 --DIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTLGY 244
             D+ + N L++D    KV DFG S+ V  DE   S   +  + +
Sbjct: 123 HRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEYTSSVGSKFPVRW 167

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  106 bits (266), Expect = 2e-28
 Identities = 41/166 (24%), Positives = 70/166 (42%), Gaps = 25/166 (15%)

Query: 104 NNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVV 163
           +   + + IG G +G V LG   +   +AIK  R    S+ E  I +  V+ +++H  +V
Sbjct: 5   SELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAMSE-EDFIEEAEVMMKLSHPKLV 63

Query: 164 GLLGCCLETEVPLLVNEFV-----------KLPTISWEVRIRIAAETAE----------- 201
            L G CLE     LV EF+           +    + E  + +  +  E           
Sbjct: 64  QLYGVCLEQAPICLVFEFMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLEEACVI 123

Query: 202 --DIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTLGYY 245
             D+ + N L+ +N   KV DFG ++ V  D+   ST  +  + + 
Sbjct: 124 HRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKWA 169

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  106 bits (265), Expect = 4e-28
 Identities = 33/170 (19%), Positives = 70/170 (41%), Gaps = 27/170 (15%)

Query: 101 IATNNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHR 160
           I   +   +  +G+G +G V++G+ +    +AIK  +    S  E  + +  V+ ++ H 
Sbjct: 14  IPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSP-EAFLQEAQVMKKLRHE 72

Query: 161 NVVGLLGCCLETEVPLLVNEFV------------KLPTISWEVRIRIAAETAE------- 201
            +V L     E  +  +V E++                +     + +AA+ A        
Sbjct: 73  KLVQLYAVVSEEPI-YIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVER 131

Query: 202 ------DIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTLGYY 245
                 D+++ NIL+ +N   KV DFG ++L+  +E       +  + + 
Sbjct: 132 MNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWT 181

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  107 bits (267), Expect = 5e-28
 Identities = 33/173 (19%), Positives = 65/173 (37%), Gaps = 29/173 (16%)

Query: 99  LKIATNNYAYDRMIGRGGYGTVFLG-SLSDNKAIAIKKSRI-VYQSQIEQCINKVVVLSQ 156
           +++  +++     +G G  G VF          +A K   + +  +   Q I ++ VL +
Sbjct: 1   MELKDDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHE 60

Query: 157 INHRNVVGLLGCCLETEVPLLVNEFV----------KLPTISWEVRIRIAAETAE----- 201
            N   +VG  G         +  E +          K   I  ++  +++    +     
Sbjct: 61  CNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKKAGRIPEQILGKVSIAVIKGLTYL 120

Query: 202 ---------DIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTLGYY 245
                    D+K  NIL++     K+CDFG S    + ++  ++ V GT  Y 
Sbjct: 121 REKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQ--LIDSMANSFV-GTRSYM 170

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]} Length = 287

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  102 bits (254), Expect = 2e-26
 Identities = 35/174 (20%), Positives = 71/174 (40%), Gaps = 27/174 (15%)

Query: 98  ELKIATNNYAYDRMIGRGGYGTVFLGSLSD-NKAIAIKKSRIVYQSQIEQCINKVVVLSQ 156
           + ++   +      +G G YG V+ G     +  +A+K  +     ++E+ + +  V+ +
Sbjct: 11  KWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKED-TMEVEEFLKEAAVMKE 69

Query: 157 INHRNVVGLLGCCLETEVPLLVNEFV------------KLPTISWEVRIRIAAETAE--- 201
           I H N+V LLG C       ++ EF+                +S  V + +A + +    
Sbjct: 70  IKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAME 129

Query: 202 ----------DIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTLGYY 245
                     D+ + N L+ +N+  KV DFG S+L+  D        +  + + 
Sbjct: 130 YLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWT 183

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  102 bits (255), Expect = 2e-26
 Identities = 36/184 (19%), Positives = 69/184 (37%), Gaps = 35/184 (19%)

Query: 89  DTAKIFTAGELKIATNNYAYDRMIGRGGYGTVFLG-SLSDNKAIAIK---KSRIVYQSQI 144
           D A++F   + +     ++  R IG G +G V+    + +++ +AIK    S      + 
Sbjct: 3   DVAELFFKDDPE---KLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKW 59

Query: 145 EQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEFV----------KLPTISWEVRIR 194
           +  I +V  L ++ H N +   GC L      LV E+               +       
Sbjct: 60  QDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLVMEYCLGSASDLLEVHKKPLQEVEIAA 119

Query: 195 IAAETAE-------------DIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGT 241
           +     +             D+K+ NILL +    K+ DFG++ ++       +    GT
Sbjct: 120 VTHGALQGLAYLHSHNMIHRDVKAGNILLSEPGLVKLGDFGSASIM-----APANSFVGT 174

Query: 242 LGYY 245
             + 
Sbjct: 175 PYWM 178

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  100 bits (249), Expect = 8e-26
 Identities = 33/173 (19%), Positives = 64/173 (36%), Gaps = 28/173 (16%)

Query: 101 IATNNYAYDRMIGRGGYGTVFLGSLSDNK----AIAIKK-SRIVYQSQIEQCINKVVVLS 155
           I        R IG G +G V  G     +    A+AIK        S  E+ + + + + 
Sbjct: 4   IQRERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMR 63

Query: 156 QINHRNVVGLLGCCLETEVPLLVNEFV----------KLPTISWEVRIRIAAETAE---- 201
           Q +H ++V L+G   E  V +++              +  ++     I  A + +     
Sbjct: 64  QFDHPHIVKLIGVITENPVWIIMELCTLGELRSFLQVRKYSLDLASLILYAYQLSTALAY 123

Query: 202 ---------DIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTLGYY 245
                    DI + N+L+  N   K+ DFG S+ +       ++  +  + + 
Sbjct: 124 LESKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTYYKASKGKLPIKWM 176

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 99.3 bits (247), Expect = 2e-25
 Identities = 28/168 (16%), Positives = 60/168 (35%), Gaps = 26/168 (15%)

Query: 103 TNNYAYDRMIGRGGYGTVFLG-SLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRN 161
            + +     +G G +G V+   +   +   A K      + ++E  + ++ +L+  +H N
Sbjct: 11  EDFWEIIGELGDGAFGKVYKAQNKETSVLAAAKVIDTKSEEELEDYMVEIDILASCDHPN 70

Query: 162 VVGLLGCCLETEVPLLVNEFV-----------KLPTISWEVRIRIAAETAE--------- 201
           +V LL          ++ EF                ++      +  +T +         
Sbjct: 71  IVKLLDAFYYENNLWILIEFCAGGAVDAVMLELERPLTESQIQVVCKQTLDALNYLHDNK 130

Query: 202 ----DIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTLGYY 245
               D+K+ NIL   +   K+ DFG S        +  + + GT  + 
Sbjct: 131 IIHRDLKAGNILFTLDGDIKLADFGVSAKNTRTIQRRDSFI-GTPYWM 177

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 98.1 bits (244), Expect = 4e-25
 Identities = 38/168 (22%), Positives = 61/168 (36%), Gaps = 30/168 (17%)

Query: 104 NNYAYDRMIGRGGYGTVFLG-SLSDNKAIAIK---KSRIVYQSQIEQCINKVVVLSQINH 159
            ++   R +G+G +G V+L         +A+K   K+++       Q   +V + S + H
Sbjct: 6   EDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRH 65

Query: 160 RNVVGLLGCCLETEVPLLVNEFV----------KLPTISWEVRIRIAAETAE-------- 201
            N++ L G   +     L+ E+           KL     +       E A         
Sbjct: 66  PNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCHSK 125

Query: 202 -----DIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTLGY 244
                DIK  N+LL      K+ DFG S   P         + GTL Y
Sbjct: 126 RVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRT---TLCGTLDY 170

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 98.5 bits (245), Expect = 4e-25
 Identities = 35/173 (20%), Positives = 70/173 (40%), Gaps = 28/173 (16%)

Query: 100 KIATNNYAYDRMIGRGGYGTVFLG-SLSDNKAIAIK---KSRIVYQSQIEQCINKVVVLS 155
           K    ++ + +++G G + TV L   L+ ++  AIK   K  I+ ++++     +  V+S
Sbjct: 4   KKRPEDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMS 63

Query: 156 QINHRNVVGLLGCCLETEVPLLVNEFV----------KLPTISWEVRIRIAAETAE---- 201
           +++H   V L     + E       +           K+ +          AE       
Sbjct: 64  RLDHPFFVKLYFTFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEY 123

Query: 202 ---------DIKSINILLDDNYTTKVCDFGASKLVPIDETQ-LSTMVQGTLGY 244
                    D+K  NILL+++   ++ DFG +K++  +  Q  +    GT  Y
Sbjct: 124 LHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANSFVGTAQY 176

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 98.1 bits (244), Expect = 5e-25
 Identities = 39/165 (23%), Positives = 73/165 (44%), Gaps = 24/165 (14%)

Query: 103 TNNYAYDRMIGRGGYGTVFLG-SLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRN 161
              Y     IG+G  GTV+    ++  + +AI++  +  Q + E  IN+++V+ +  + N
Sbjct: 19  KKKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPN 78

Query: 162 VVGLLGCCLETEVPLLVNEFVKLPTI---------SWEVRIRIAAETAE----------- 201
           +V  L   L  +   +V E++   ++                +  E  +           
Sbjct: 79  IVNYLDSYLVGDELWVVMEYLAGGSLTDVVTETCMDEGQIAAVCRECLQALEFLHSNQVI 138

Query: 202 --DIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTLGY 244
             DIKS NILL  + + K+ DFG    +  ++++ STMV GT  +
Sbjct: 139 HRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMV-GTPYW 182

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 96.7 bits (240), Expect = 2e-24
 Identities = 35/194 (18%), Positives = 69/194 (35%), Gaps = 42/194 (21%)

Query: 94  FTAGELKIATNN---------YAYDRMIGRGGYGTVFLGSL----SDNKAIAIKK-SRIV 139
           FT  +   A               +++IG G +G V  G L         +AIK      
Sbjct: 7   FTFEDPNEAVREFAKEIDISCVKIEQVIGAGEFGEVCSGHLKLPGKREIFVAIKTLKSGY 66

Query: 140 YQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEFV-----------KLPTIS 188
            + Q    +++  ++ Q +H NV+ L G   ++   +++ EF+                +
Sbjct: 67  TEKQRRDFLSEASIMGQFDHPNVIHLEGVVTKSTPVMIITEFMENGSLDSFLRQNDGQFT 126

Query: 189 WEVRIRIAAETAE-------------DIKSINILLDDNYTTKVCDFGASKLVPIDETQLS 235
               + +    A              D+ + NIL++ N   KV DFG S+ +  D +  +
Sbjct: 127 VIQLVGMLRGIAAGMKYLADMNYVHRDLAARNILVNSNLVCKVSDFGLSRFLEDDTSDPT 186

Query: 236 TM----VQGTLGYY 245
                  +  + + 
Sbjct: 187 YTSALGGKIPIRWT 200

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 96.8 bits (240), Expect = 2e-24
 Identities = 41/171 (23%), Positives = 78/171 (45%), Gaps = 33/171 (19%)

Query: 108 YDRMIGRGGYGTVFLGSLSDNK----AIAIKK-SRIVYQSQIEQCINKVVVLSQINHRNV 162
           ++ +IGRG +G V+ G+L DN       A+K  +RI    ++ Q + + +++   +H NV
Sbjct: 31  FNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNV 90

Query: 163 VGLLGCCLETE-VPLLVNEFV-----------KLPTISWEVRIRIAAETAE--------- 201
           + LLG CL +E  PL+V  ++           +    + +  I    + A+         
Sbjct: 91  LSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKFLASKK 150

Query: 202 ----DIKSINILLDDNYTTKVCDFGASKLVPIDE---TQLSTMVQGTLGYY 245
               D+ + N +LD+ +T KV DFG ++ +   E       T  +  + + 
Sbjct: 151 FVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGAKLPVKWM 201

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 96.3 bits (239), Expect = 3e-24
 Identities = 37/179 (20%), Positives = 75/179 (41%), Gaps = 32/179 (17%)

Query: 98  ELKIATNNYAY-DRMIGRGGYGTVFLGSLSDNK---AIAIKK-SRIVYQSQIEQCINKVV 152
           +L +  +N    D  +G G +G+V  G     K    +AIK   +   ++  E+ + +  
Sbjct: 2   KLFLKRDNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQ 61

Query: 153 VLSQINHRNVVGLLGCCLETEVPLLVNEFV-----------KLPTISWEVRIRIAAETAE 201
           ++ Q+++  +V L+G C + E  +LV E             K   I       +  + + 
Sbjct: 62  IMHQLDNPYIVRLIGVC-QAEALMLVMEMAGGGPLHKFLVGKREEIPVSNVAELLHQVSM 120

Query: 202 -------------DIKSINILLDDNYTTKVCDFGASKLVPIDETQLS--TMVQGTLGYY 245
                        D+ + N+LL + +  K+ DFG SK +  D++  +  +  +  L +Y
Sbjct: 121 GMKYLEEKNFVHRDLAARNVLLVNRHYAKISDFGLSKALGADDSYYTARSAGKWPLKWY 179

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 283

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 95.3 bits (236), Expect = 5e-24
 Identities = 35/178 (19%), Positives = 70/178 (39%), Gaps = 32/178 (17%)

Query: 100 KIATNNYAYDRMIGRGGYGTVFLGSLSDN-----KAIAIKKSRIVY-QSQIEQCINKVVV 153
           +I  +     ++IG G +G V+ G L  +       +AIK  +  Y + Q    + +  +
Sbjct: 3   EIHPSCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGI 62

Query: 154 LSQINHRNVVGLLGCCLETEVPLLVNEFV-----------KLPTISWEVRIRIAAETAE- 201
           + Q +H N++ L G   + +  +++ E++           K    S    + +    A  
Sbjct: 63  MGQFSHHNIIRLEGVISKYKPMMIITEYMENGALDKFLREKDGEFSVLQLVGMLRGIAAG 122

Query: 202 ------------DIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQ--GTLGYY 245
                       D+ + NIL++ N   KV DFG S+++  D     T       + + 
Sbjct: 123 MKYLANMNYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEATYTTSGGKIPIRWT 180

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 271

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 95.1 bits (236), Expect = 5e-24
 Identities = 36/167 (21%), Positives = 61/167 (36%), Gaps = 26/167 (15%)

Query: 104 NNYAYDRMIGRGGYGTVFLG-SLSDNKAIAIKKSRIVYQSQI-EQCINKVVVLSQINHRN 161
            ++   + +G G YG V L  +    +A+A+K   +       E    ++ +   +NH N
Sbjct: 5   EDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHEN 64

Query: 162 VVGLLGCCLETEVPLLVNEFV----------KLPTISWEVRIRIAAETAE---------- 201
           VV   G   E  +  L  E+               +      R   +             
Sbjct: 65  VVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFFHQLMAGVVYLHGIGI 124

Query: 202 ---DIKSINILLDDNYTTKVCDFGASKLVPID-ETQLSTMVQGTLGY 244
              DIK  N+LLD+    K+ DFG + +   +   +L   + GTL Y
Sbjct: 125 THRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPY 171

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 94.4 bits (234), Expect = 1e-23
 Identities = 35/167 (20%), Positives = 69/167 (41%), Gaps = 31/167 (18%)

Query: 109 DRMIGRGGYGTVFLGSLSD---NKAIAIK--KSRIVYQSQIEQCINKVVVLSQINHRNVV 163
           D+ +G G +GTV  G        K +A+K  K+     +  ++ + +  V+ Q+++  +V
Sbjct: 12  DKELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIV 71

Query: 164 GLLGCCLETEVPLLVNEFV----------KLPTISWEVRIRIAAETAE------------ 201
            ++G C E E  +LV E            +   +  +  I +  + +             
Sbjct: 72  RMIGIC-EAESWMLVMEMAELGPLNKYLQQNRHVKDKNIIELVHQVSMGMKYLEESNFVH 130

Query: 202 -DIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTM--VQGTLGYY 245
            D+ + N+LL   +  K+ DFG SK +  DE         +  + +Y
Sbjct: 131 RDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQTHGKWPVKWY 177

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} Length = 262

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 93.9 bits (233), Expect = 1e-23
 Identities = 37/175 (21%), Positives = 72/175 (41%), Gaps = 29/175 (16%)

Query: 104 NNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVV 163
                 + IG+G +G V LG    NK +A+K   I   +  +  + +  V++Q+ H N+V
Sbjct: 7   KELKLLQTIGKGEFGDVMLGDYRGNK-VAVKC--IKNDATAQAFLAEASVMTQLRHSNLV 63

Query: 164 GLLGCCLETEVPL-LVNEFV------------KLPTISWEVRIRIAAETAE--------- 201
            LLG  +E +  L +V E++                +  +  ++ + +  E         
Sbjct: 64  QLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGNN 123

Query: 202 ----DIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTLGYYLHTSQGT 252
               D+ + N+L+ ++   KV DFG +K     +      V+ T    L   + +
Sbjct: 124 FVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGKLPVKWTAPEALREKKFS 178

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 270

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 92.7 bits (230), Expect = 4e-23
 Identities = 31/172 (18%), Positives = 60/172 (34%), Gaps = 36/172 (20%)

Query: 106 YAYDRMIGRGGYGTVFLG-SLSDNKAIAIKK--SRIVYQSQIEQCINKVVVLSQINHRNV 162
             +D  IGRG + TV+ G        +A  +   R + +S+ ++   +  +L  + H N+
Sbjct: 11  LKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNI 70

Query: 163 VGLLGCCLET----EVPLLVNEFV----------KLPTISWEVRIRIAAETAE------- 201
           V        T    +  +LV E +          +   +  +V      +  +       
Sbjct: 71  VRFYDSWESTVKGKKCIVLVTELMTSGTLKTYLKRFKVMKIKVLRSWCRQILKGLQFLHT 130

Query: 202 --------DIKSINILLDD-NYTTKVCDFGASKLVPIDETQLSTMVQGTLGY 244
                   D+K  NI +     + K+ D G + L        +  V GT  +
Sbjct: 131 RTPPIIHRDLKCDNIFITGPTGSVKIGDLGLATL---KRASFAKAVIGTPEF 179

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 317

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 93.3 bits (231), Expect = 6e-23
 Identities = 33/180 (18%), Positives = 72/180 (40%), Gaps = 31/180 (17%)

Query: 97  GELKIATNN-YAYDRMIGRGGYGTVFLGSLSDNK-----AIAIKKSRIVYQSQ-IEQCIN 149
             L+I     +   +++G G +GTV+ G            +AIK+ R     +  ++ ++
Sbjct: 1   ALLRILKETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILD 60

Query: 150 KVVVLSQINHRNVVGLLGCCLETEVPLLVNEFV----------KLPTISWEVRIRIAAET 199
           +  V++ +++ +V  LLG CL + V L+                   I  +  +    + 
Sbjct: 61  EAYVMASVDNPHVCRLLGICLTSTVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQI 120

Query: 200 AE-------------DIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTM-VQGTLGYY 245
           A+             D+ + N+L+      K+ DFG +KL+  +E +      +  + + 
Sbjct: 121 AKGMNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWM 180

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

 Score = 92.8 bits (230), Expect = 1e-22
 Identities = 28/168 (16%), Positives = 59/168 (35%), Gaps = 29/168 (17%)

Query: 104 NNYAYDRMIGRGGYGTVFLG-SLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNV 162
           ++Y     +G G +G V      +     A K     ++S  E    ++  +S + H  +
Sbjct: 26  DHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPTL 85

Query: 163 VGLLGCCLETEVPLLVNEFV-----------KLPTISWEVRIRIAAETAE---------- 201
           V L     +    +++ EF+           +   +S +  +    +  +          
Sbjct: 86  VNLHDAFEDDNEMVMIYEFMSGGELFEKVADEHNKMSEDEAVEYMRQVCKGLCHMHENNY 145

Query: 202 ---DIKSINILL--DDNYTTKVCDFGASKLVPIDETQLSTMVQGTLGY 244
              D+K  NI+     +   K+ DFG +    +D  Q   +  GT  +
Sbjct: 146 VHLDLKPENIMFTTKRSNELKLIDFGLTAH--LDPKQSVKVTTGTAEF 191

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 301

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 91.1 bits (225), Expect = 3e-22
 Identities = 36/203 (17%), Positives = 66/203 (32%), Gaps = 55/203 (27%)

Query: 98  ELKIATNNYAYDRMIGRGGYGTVFLG------SLSDNKAIAIKK-SRIVYQSQIEQCINK 150
            L+   NN  Y R IG G +G VF               +A+K                +
Sbjct: 7   SLEYPRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQRE 66

Query: 151 VVVLSQINHRNVVGLLGCCLETEVPLLVNEFV---------------------------- 182
             ++++ ++ N+V LLG C   +   L+ E++                            
Sbjct: 67  AALMAEFDNPNIVKLLGVCAVGKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTR 126

Query: 183 ------KLPTISWEVRIRIAAETAE-------------DIKSINILLDDNYTTKVCDFGA 223
                   P +S   ++ IA + A              D+ + N L+ +N   K+ DFG 
Sbjct: 127 ARVSSPGPPPLSCAEQLCIARQVAAGMAYLSERKFVHRDLATRNCLVGENMVVKIADFGL 186

Query: 224 SKLVP-IDETQLSTMVQGTLGYY 245
           S+ +   D  +        + + 
Sbjct: 187 SRNIYSADYYKADGNDAIPIRWM 209

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.4 bits (221), Expect = 8e-22
 Identities = 31/178 (17%), Positives = 60/178 (33%), Gaps = 34/178 (19%)

Query: 101 IATNNYAYDRMIGRGGYGTVFLGSL----SDNKAIAIK---KSRIVYQSQIEQCINKVVV 153
           I   +      +G G +G V  G          ++A+K      +     ++  I +V  
Sbjct: 5   IGEKDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNA 64

Query: 154 LSQINHRNVVGLLGCCLETEVPLLVNEFV-----------KLPTISWEVRIRIAAETAE- 201
           +  ++HRN++ L G  L   +  +V E                        R A + AE 
Sbjct: 65  MHSLDHRNLIRLYGVVLTPPM-KMVTELAPLGSLLDRLRKHQGHFLLGTLSRYAVQVAEG 123

Query: 202 ------------DIKSINILLDDNYTTKVCDFGASKLVPIDETQ--LSTMVQGTLGYY 245
                       D+ + N+LL      K+ DFG  + +P ++    +    +    + 
Sbjct: 124 MGYLESKRFIHRDLAARNLLLATRDLVKIGDFGLMRALPQNDDHYVMQEHRKVPFAWC 181

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]} Length = 269

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.5 bits (219), Expect = 1e-21
 Identities = 32/177 (18%), Positives = 65/177 (36%), Gaps = 38/177 (21%)

Query: 105 NYAYDRMIGRGGYGTVFLG-SLSDNKAIAIKKSRI--VYQSQIEQCINKVVVLSQINHRN 161
           +Y     IG G YG        SD K +  K+     + +++ +  +++V +L ++ H N
Sbjct: 5   DYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPN 64

Query: 162 VVGLLGCCLETE--VPLLVNEFV--------------KLPTISWEVRIRIAAETAE---- 201
           +V      ++       +V E+               +   +  E  +R+  +       
Sbjct: 65  IVRYYDRIIDRTNTTLYIVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKE 124

Query: 202 --------------DIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTLGY 244
                         D+K  N+ LD     K+ DFG ++++   +T  +    GT  Y
Sbjct: 125 CHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLARILN-HDTSFAKAFVGTPYY 180

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 316

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 89.4 bits (221), Expect = 1e-21
 Identities = 40/168 (23%), Positives = 70/168 (41%), Gaps = 31/168 (18%)

Query: 104 NNYAYDRMIGRGGYGTVFLG-SLSDNKAIAIK---KSRIVYQSQIEQCINKVVVLSQINH 159
            ++   R +G G +G V L  S  + +  A+K   K  +V   Q+E   ++ ++LS + H
Sbjct: 4   QDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTH 63

Query: 160 RNVVGLLGCCLETEVPLLVNEFV----------KLPTISWEVRIRIAAETAE-------- 201
             ++ + G   + +   ++ +++          K       V    AAE           
Sbjct: 64  PFIIRMWGTFQDAQQIFMIMDYIEGGELFSLLRKSQRFPNPVAKFYAAEVCLALEYLHSK 123

Query: 202 -----DIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTLGY 244
                D+K  NILLD N   K+ DFG +K VP     ++  + GT  Y
Sbjct: 124 DIIYRDLKPENILLDKNGHIKITDFGFAKYVP----DVTYTLCGTPDY 167

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.1 bits (220), Expect = 2e-21
 Identities = 37/186 (19%), Positives = 67/186 (36%), Gaps = 46/186 (24%)

Query: 104 NNYAYDRMIGRGGYGTVFLGSLSDN---KAIAIKK-SRIVYQSQIEQCINKVVVLSQI-N 158
           N+  +  +IG G +G V    +  +      AIK+      +        ++ VL ++ +
Sbjct: 10  NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGH 69

Query: 159 HRNVVGLLGCCLETEVPLLVNEFV--------------------------KLPTISWEVR 192
           H N++ LLG C       L  E+                              T+S +  
Sbjct: 70  HPNIINLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQL 129

Query: 193 IRIAAETAE-------------DIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQ 239
           +  AA+ A              D+ + NIL+ +NY  K+ DFG S+   +      TM +
Sbjct: 130 LHFAADVARGMDYLSQKQFIHRDLAARNILVGENYVAKIADFGLSRGQEVYVK--KTMGR 187

Query: 240 GTLGYY 245
             + + 
Sbjct: 188 LPVRWM 193

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 325

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.7 bits (219), Expect = 3e-21
 Identities = 40/233 (17%), Positives = 87/233 (37%), Gaps = 62/233 (26%)

Query: 75  YLLQLQLSKRSGSSDTAKIFTAG-------ELKIATNNYAYDRMIGRGGYGTVFLGSLSD 127
           Y  QLQ+ + +GSSD    +          + +    N  + +++G G +G V   +   
Sbjct: 1   YESQLQMVQVTGSSDNEYFYVDFREYEYDLKWEFPRENLEFGKVLGSGAFGKVMNATAYG 60

Query: 128 ------NKAIAIKK-SRIVYQSQIEQCINKVVVLSQI-NHRNVVGLLGCCLETEVPLLVN 179
                 +  +A+K        S+ E  ++++ +++Q+ +H N+V LLG C  +    L+ 
Sbjct: 61  ISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSHENIVNLLGACTLSGPIYLIF 120

Query: 180 EFV---------------------------------KLPTISWEVRIRIAAETAE----- 201
           E+                                   L  +++E  +  A + A+     
Sbjct: 121 EYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFL 180

Query: 202 --------DIKSINILLDDNYTTKVCDFGASKLVPIDETQLS-TMVQGTLGYY 245
                   D+ + N+L+      K+CDFG ++ +  D   +     +  + + 
Sbjct: 181 EFKSCVHRDLAARNVLVTHGKVVKICDFGLARDIMSDSNYVVRGNARLPVKWM 233

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.3 bits (218), Expect = 3e-21
 Identities = 35/195 (17%), Positives = 70/195 (35%), Gaps = 50/195 (25%)

Query: 101 IATNNYAYDRMIGRGGYGTVFLGSL------SDNKAIAIKK-SRIVYQSQIEQCINKVVV 153
              N  ++ + +G G +G V   +            +A+K      + ++ E  ++++ V
Sbjct: 20  FPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKV 79

Query: 154 LSQI-NHRNVVGLLGCCLETEVPLLVNEFV----------------------------KL 184
           LS + NH N+V LLG C      L++ E+                               
Sbjct: 80  LSYLGNHMNIVNLLGACTIGGPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDE 139

Query: 185 PTISWEVRIRIAAETAE-------------DIKSINILLDDNYTTKVCDFGASKLVPIDE 231
             +  E  +  + + A+             D+ + NILL     TK+CDFG ++ +  D 
Sbjct: 140 LALDLEDLLSFSYQVAKGMAFLASKNCIHRDLAARNILLTHGRITKICDFGLARDIKNDS 199

Query: 232 TQ-LSTMVQGTLGYY 245
              +    +  + + 
Sbjct: 200 NYVVKGNARLPVKWM 214

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.8 bits (214), Expect = 9e-21
 Identities = 37/165 (22%), Positives = 68/165 (41%), Gaps = 30/165 (18%)

Query: 110 RMIGRGGYGTVFLG-SLSDNKAIAIKKSRIVYQSQIEQCINK-----VVVLSQINHRNVV 163
             +G G + TV+     + N+ +AIKK ++ ++S+ +  IN+     + +L +++H N++
Sbjct: 4   DFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNII 63

Query: 164 GLLGCCLETEVPLLVNEFV----------KLPTISWEVRIRIAAETAE------------ 201
           GLL          LV +F+              ++          T +            
Sbjct: 64  GLLDAFGHKSNISLVFDFMETDLEVIIKDNSLVLTPSHIKAYMLMTLQGLEYLHQHWILH 123

Query: 202 -DIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTLGYY 245
            D+K  N+LLD+N   K+ DFG +K       +  T    T  Y 
Sbjct: 124 RDLKPNNLLLDENGVLKLADFGLAKSFG-SPNRAYTHQVVTRWYR 167

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.5 bits (216), Expect = 9e-21
 Identities = 37/173 (21%), Positives = 64/173 (36%), Gaps = 28/173 (16%)

Query: 100 KIATNNYAYDRMIGRGGYGTVFLG-SLSDNKAIAIK---KSRIVYQSQIEQCINKVVVLS 155
           K+  N++ Y +++G+G +G V L    +  +  A+K   K  I+ + ++   + +  VL 
Sbjct: 1   KVTMNDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQ 60

Query: 156 QINHRNVVGLLGCCLETEVPLLVNEFV----------KLPTISWEVRIRIAAETAE---- 201
              H  +  L       +    V E+           +    + E      AE       
Sbjct: 61  NTRHPFLTALKYAFQTHDRLCFVMEYANGGELFFHLSRERVFTEERARFYGAEIVSALEY 120

Query: 202 ---------DIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTLGYY 245
                    DIK  N++LD +   K+ DFG  K    D   + T   GT  Y 
Sbjct: 121 LHSRDVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGATMKTFC-GTPEYL 172

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]} Length = 345

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.6 bits (216), Expect = 1e-20
 Identities = 31/169 (18%), Positives = 63/169 (37%), Gaps = 28/169 (16%)

Query: 97  GELKIATNNYAYDRMIGRGGYGTVFLG-SLSDNKAIAIKK-SRIVYQSQIEQCINKVVVL 154
           G++      Y     IG G YG V       +   +AIKK S   +Q+  ++ + ++ +L
Sbjct: 1   GQVFDVGPRYTNLSYIGEGAYGMVCSAYDNVNKVRVAIKKISPFEHQTYCQRTLREIKIL 60

Query: 155 SQINHRNVVGLLGCCLETEVPLLVNEFV-------------KLPTISWEVRIRIAAETAE 201
            +  H N++G+        +  + + ++             K   +S +       +   
Sbjct: 61  LRFRHENIIGINDIIRAPTIEQMKDVYLVTHLMGADLYKLLKTQHLSNDHICYFLYQILR 120

Query: 202 -------------DIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTM 237
                        D+K  N+LL+     K+CDFG +++   D      +
Sbjct: 121 GLKYIHSANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFL 169

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]} Length = 352

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

 Score = 86.7 bits (214), Expect = 2e-20
 Identities = 27/169 (15%), Positives = 59/169 (34%), Gaps = 29/169 (17%)

Query: 104 NNYAYDRMIGRGGYGTVFLG-SLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNV 162
           + Y     +G G +G V      +  +    K     Y        N++ +++Q++H  +
Sbjct: 29  DYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPKL 88

Query: 163 VGLLGCCLETEVPLLVNEFV-----------KLPTISWEVRIRIAAETAE---------- 201
           + L     +    +L+ EF+           +   +S    I    +  E          
Sbjct: 89  INLHDAFEDKYEMVLILEFLSGGELFDRIAAEDYKMSEAEVINYMRQACEGLKHMHEHSI 148

Query: 202 ---DIKSINILLD--DNYTTKVCDFGASKLVPIDETQLSTMVQGTLGYY 245
              DIK  NI+ +     + K+ DFG +    ++  ++  +   T  + 
Sbjct: 149 VHLDIKPENIMCETKKASSVKIIDFGLAT--KLNPDEIVKVTTATAEFA 195

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]} Length = 364

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 86.7 bits (214), Expect = 2e-20
 Identities = 35/174 (20%), Positives = 63/174 (36%), Gaps = 33/174 (18%)

Query: 104 NNYAYDRMIGRGGYGTVFLG-SLSDNKAIAIK---KSRIVYQSQIEQCINKVVV---LSQ 156
           N+++  R+IGRGG+G V+        K  A+K   K RI  +      +N+ ++   +S 
Sbjct: 4   NDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVST 63

Query: 157 INHRNVVGLLGCCLETEVPLLVNEFV----------KLPTISWEVRIRIAAETAE----- 201
            +   +V +       +    + + +          +    S       AAE        
Sbjct: 64  GDCPFIVCMSYAFHTPDKLSFILDLMNGGDLHYHLSQHGVFSEADMRFYAAEIILGLEHM 123

Query: 202 --------DIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTLGYYLH 247
                   D+K  NILLD++   ++ D G +      +        GT GY   
Sbjct: 124 HNRFVVYRDLKPANILLDEHGHVRISDLGLACDFSKKKP---HASVGTHGYMAP 174

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]} Length = 303

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.3 bits (210), Expect = 4e-20
 Identities = 34/181 (18%), Positives = 61/181 (33%), Gaps = 40/181 (22%)

Query: 101 IATNNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHR 160
           IA         IG+G +G V+ G     + +A+K      +    +   ++     + H 
Sbjct: 1   IA-RTIVLQESIGKGRFGEVWRGKW-RGEEVAVKIFSSREERSWFR-EAEIYQTVMLRHE 57

Query: 161 NVVGLLGCCLETE----VPLLVNEFV---------KLPTISWEVRIRIAAETAE------ 201
           N++G +    +         LV+++             T++ E  I++A  TA       
Sbjct: 58  NILGFIAADNKDNGTWTQLWLVSDYHEHGSLFDYLNRYTVTVEGMIKLALSTASGLAHLH 117

Query: 202 ---------------DIKSINILLDDNYTTKVCDFGASKLVPIDETQLS---TMVQGTLG 243
                          D+KS NIL+  N T  + D G +         +        GT  
Sbjct: 118 MEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSATDTIDIAPNHRVGTKR 177

Query: 244 Y 244
           Y
Sbjct: 178 Y 178

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]} Length = 286

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

 Score = 83.8 bits (206), Expect = 1e-19
 Identities = 30/174 (17%), Positives = 59/174 (33%), Gaps = 25/174 (14%)

Query: 104 NNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQ--IEQCINKVVVLSQINHRN 161
             Y     IG G YG V+    +  +  A+KK R+  + +      I ++ +L ++ H N
Sbjct: 2   EKYHGLEKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSN 61

Query: 162 VVGLLGCCLETEVPLLVNEFVKLPT----------ISWEVRIRIAAETAE---------- 201
           +V L       +  +LV E +              +          +             
Sbjct: 62  IVKLYDVIHTKKRLVLVFEHLDQDLKKLLDVCEGGLESVTAKSFLLQLLNGIAYCHDRRV 121

Query: 202 ---DIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTLGYYLHTSQGT 252
              D+K  N+L++     K+ DFG ++   I   + +  +            G+
Sbjct: 122 LHRDLKPQNLLINREGELKIADFGLARAFGIPVRKYTHEIVTLWYRAPDVLMGS 175

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 308

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.4 bits (205), Expect = 2e-19
 Identities = 36/196 (18%), Positives = 75/196 (38%), Gaps = 41/196 (20%)

Query: 91  AKIFTAGELKIATNNYAYDRMIGRGGYGTVFLGSL------SDNKAIAIKK-SRIVYQSQ 143
           A ++   E ++A       R +G+G +G V+ G             +AIK  +      +
Sbjct: 7   ADVYVPDEWEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRE 66

Query: 144 IEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEFV--------------------K 183
             + +N+  V+ + N  +VV LLG   + +  L++ E +                     
Sbjct: 67  RIEFLNEASVMKEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPAMANNPV 126

Query: 184 LPTISWEVRIRIAAETAE-------------DIKSINILLDDNYTTKVCDFGASKLVP-I 229
           L   S    I++A E A+             D+ + N ++ +++T K+ DFG ++ +   
Sbjct: 127 LAPPSLSKMIQMAGEIADGMAYLNANKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYET 186

Query: 230 DETQLSTMVQGTLGYY 245
           D  +        + + 
Sbjct: 187 DYYRKGGKGLLPVRWM 202

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 307

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 82.4 bits (203), Expect = 4e-19
 Identities = 32/170 (18%), Positives = 60/170 (35%), Gaps = 30/170 (17%)

Query: 103 TNNYAYDRMIGRGGYGTVFLG-SLSDNKAIAIKK-SRIVYQSQIEQCINKVVVLSQINHR 160
            + Y +  ++G G +  V L       K +AIK  ++   + +     N++ VL +I H 
Sbjct: 8   RDIYDFRDVLGTGAFSEVILAEDKRTQKLVAIKCIAKKALEGKEGSMENEIAVLHKIKHP 67

Query: 161 NVVGLLGCCLETEVPLLVNEFV----------KLPTISWEVRIRIAAETAE--------- 201
           N+V L           L+ + V          +    +     R+  +  +         
Sbjct: 68  NIVALDDIYESGGHLYLIMQLVSGGELFDRIVEKGFYTERDASRLIFQVLDAVKYLHDLG 127

Query: 202 -------DIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTLGY 244
                      +   LD++    + DFG SK+   D   + +   GT GY
Sbjct: 128 IVHRDLKPENLLYYSLDEDSKIMISDFGLSKM--EDPGSVLSTACGTPGY 175

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 81.7 bits (201), Expect = 6e-19
 Identities = 32/175 (18%), Positives = 63/175 (36%), Gaps = 33/175 (18%)

Query: 103 TNNYAYDRMIGRGGYGTVFLG-SLSDNKAIAIK---KSRIVYQSQIEQCINKVVVLSQIN 158
           ++ Y    ++G GG   V L   L  ++ +A+K          S   +   +    + +N
Sbjct: 6   SDRYELGEILGFGGMSEVHLARDLRLHRDVAVKVLRADLARDPSFYLRFRREAQNAAALN 65

Query: 159 HRNVVGLLGCCLETE----VPLLVNEFV----------KLPTISWEVRIRIAAETAE--- 201
           H  +V +            +P +V E+V              ++ +  I + A+  +   
Sbjct: 66  HPAIVAVYDTGEAETPAGPLPYIVMEYVDGVTLRDIVHTEGPMTPKRAIEVIADACQALN 125

Query: 202 ----------DIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTM--VQGTLGY 244
                     D+K  NI++      KV DFG ++ +      ++    V GT  Y
Sbjct: 126 FSHQNGIIHRDVKPANIMISATNAVKVMDFGIARAIADSGNSVTQTAAVIGTAQY 180

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]} Length = 320

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.1 bits (202), Expect = 6e-19
 Identities = 39/170 (22%), Positives = 62/170 (36%), Gaps = 29/170 (17%)

Query: 104 NNYAYDRMIGRGGYGTVFLG-SLSDNKAIAIK---KSRIVYQSQIEQCINKVVVLS-QIN 158
            ++   +M+G+G +G VFL      N+  AIK   K  ++    +E  + +  VLS    
Sbjct: 2   EDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWE 61

Query: 159 HRNVVGLLGCCLETEVPLLVNEFV----------KLPTISWEVRIRIAAETAE------- 201
           H  +  +       E    V E++                       AAE          
Sbjct: 62  HPFLTHMFCTFQTKENLFFVMEYLNGGDLMYHIQSCHKFDLSRATFYAAEIILGLQFLHS 121

Query: 202 ------DIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTLGYY 245
                 D+K  NILLD +   K+ DFG  K   + + + +T   GT  Y 
Sbjct: 122 KGIVYRDLKLDNILLDKDGHIKIADFGMCKENMLGDAKTNTFC-GTPDYI 170

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.5 bits (200), Expect = 9e-19
 Identities = 37/194 (19%), Positives = 69/194 (35%), Gaps = 49/194 (25%)

Query: 101 IATNNYAYDRMIGRGGYGTVFLG------SLSDNKAIAIKK-SRIVYQSQIEQCINKVVV 153
              +     + +GRG +G V           +  + +A+K        S+    ++++ +
Sbjct: 10  FPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKI 69

Query: 154 LSQINHR-NVVGLLGCCLETEVPLLV---------------------------NEFVKLP 185
           L  I H  NVV LLG C +   PL+V                            E +   
Sbjct: 70  LIHIGHHLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKD 129

Query: 186 TISWEVRIRIAAETAE-------------DIKSINILLDDNYTTKVCDFGASKLVPIDET 232
            ++ E  I  + + A+             D+ + NILL +    K+CDFG ++ +  D  
Sbjct: 130 FLTLEHLICYSFQVAKGMEFLASRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPD 189

Query: 233 QL-STMVQGTLGYY 245
            +     +  L + 
Sbjct: 190 YVRKGDARLPLKWM 203

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]} Length = 298

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.7 bits (198), Expect = 2e-18
 Identities = 34/167 (20%), Positives = 63/167 (37%), Gaps = 27/167 (16%)

Query: 105 NYAYDRMIGRGGYGTVFLG-SLSDNKAIAIKKSRIVYQSQ--IEQCINKVVVLSQINHRN 161
           N+     IG G YG V+   +    + +A+KK R+  +++      I ++ +L ++NH N
Sbjct: 3   NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPN 62

Query: 162 VVGLLGCCLETEVPLLVNEFV-----------KLPTISWEVRIRIAAETAE--------- 201
           +V LL          LV EF+            L  I   +      +  +         
Sbjct: 63  IVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHSHR 122

Query: 202 ----DIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTLGY 244
               D+K  N+L++     K+ DFG ++   +     +  V      
Sbjct: 123 VLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLWYR 169

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]} Length = 321

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.1 bits (197), Expect = 3e-18
 Identities = 29/168 (17%), Positives = 57/168 (33%), Gaps = 30/168 (17%)

Query: 105 NYAYDRMIGRGGYGTVFLG-SLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVV 163
            Y     +GRG +G V      S  K    K  ++    Q      ++ +L+   HRN++
Sbjct: 6   KYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVKGTDQ-VLVKKEISILNIARHRNIL 64

Query: 164 GLLGCCLETEVPLLVNEFV-----------KLPTISWEVRIRIAAETAE----------- 201
            L       E  +++ EF+               ++    +    +  E           
Sbjct: 65  HLHESFESMEELVMIFEFISGLDIFERINTSAFELNEREIVSYVHQVCEALQFLHSHNIG 124

Query: 202 --DIKSINILLD--DNYTTKVCDFGASKLVPIDETQLSTMVQGTLGYY 245
             DI+  NI+     + T K+ +FG ++   +       ++     YY
Sbjct: 125 HFDIRPENIIYQTRRSSTIKIIEFGQARQ--LKPGDNFRLLFTAPEYY 170

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]} Length = 292

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.8 bits (193), Expect = 7e-18
 Identities = 36/168 (21%), Positives = 65/168 (38%), Gaps = 27/168 (16%)

Query: 104 NNYAYDRMIGRGGYGTVFLG-SLSDNKAIAIKKSRIVYQSQ--IEQCINKVVVLSQINHR 160
             Y     IG G YGTVF   +   ++ +A+K+ R+    +      + ++ +L ++ H+
Sbjct: 2   QKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHK 61

Query: 161 NVVGLLGCCLETEVPLLVNEFVKLPT----------ISWEVRIRIAAETAE--------- 201
           N+V L       +   LV EF               +  E+      +  +         
Sbjct: 62  NIVRLHDVLHSDKKLTLVFEFCDQDLKKYFDSCNGDLDPEIVKSFLFQLLKGLGFCHSRN 121

Query: 202 ----DIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTLGYY 245
               D+K  N+L++ N   K+ +FG ++   I     S  V  TL Y 
Sbjct: 122 VLHRDLKPQNLLINRNGELKLANFGLARAFGIPVRCYSAEVV-TLWYR 168

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score = 77.4 bits (190), Expect = 2e-17
 Identities = 41/174 (23%), Positives = 63/174 (36%), Gaps = 36/174 (20%)

Query: 105 NYAYDRMIGRGGYGTVFLG-SLSDNKAIAIKK---------SRIVYQSQIEQCINKVVVL 154
           NY    ++GRG    V         K  A+K          S    Q   E  + +V +L
Sbjct: 4   NYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDIL 63

Query: 155 SQIN-HRNVVGLLGCCLETEVPLLVNEFV----------KLPTISWEVRIRIAAETAE-- 201
            +++ H N++ L           LV + +          +  T+S +   +I     E  
Sbjct: 64  RKVSGHPNIIQLKDTYETNTFFFLVFDLMKKGELFDYLTEKVTLSEKETRKIMRALLEVI 123

Query: 202 -----------DIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTLGY 244
                      D+K  NILLDD+   K+ DFG S    +D  +    V GT  Y
Sbjct: 124 CALHKLNIVHRDLKPENILLDDDMNIKLTDFGFSCQ--LDPGEKLREVCGTPSY 175

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]} Length = 318

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.0 bits (191), Expect = 2e-17
 Identities = 34/178 (19%), Positives = 61/178 (34%), Gaps = 37/178 (20%)

Query: 104 NNYAYDRMIGRGGYGTVFLG-SLSDNKAIAIKKSRI--VYQSQIEQCINKVVVLSQINHR 160
           + Y     IG+G +G VF        + +A+KK  +    +      + ++ +L  + H 
Sbjct: 10  SKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHE 69

Query: 161 NVVGLLGCCLETEVP--------LLVNEFV----------KLPTISWEVRIRIAAETAE- 201
           NVV L+  C     P         LV +F            L   +     R+       
Sbjct: 70  NVVNLIEICRTKASPYNRCKGSIYLVFDFCEHDLAGLLSNVLVKFTLSEIKRVMQMLLNG 129

Query: 202 ------------DIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQ---GTLGY 244
                       D+K+ N+L+  +   K+ DFG ++   + +            TL Y
Sbjct: 130 LYYIHRNKILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNSQPNRYTNRVVTLWY 187

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.7 bits (183), Expect = 2e-16
 Identities = 42/175 (24%), Positives = 72/175 (41%), Gaps = 37/175 (21%)

Query: 104 NNYAYDRMIGRGGYGTVFLG-SLSDNKAIAIK---KSRIVYQSQIEQC---INKVVVLSQ 156
           + Y    ++G GG+G+V+ G  +SDN  +AIK   K RI    ++        +VV+L +
Sbjct: 4   SQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKK 63

Query: 157 IN--HRNVVGLLGCCLETEVPLLVNEFV-----------KLPTISWEVRIRIAAETAE-- 201
           ++     V+ LL      +  +L+ E             +   +  E+      +  E  
Sbjct: 64  VSSGFSGVIRLLDWFERPDSFVLILERPEPVQDLFDFITERGALQEELARSFFWQVLEAV 123

Query: 202 -----------DIKSINILLD-DNYTTKVCDFGASKLVPIDETQLSTMVQGTLGY 244
                      DIK  NIL+D +    K+ DFG+  L+   +  + T   GT  Y
Sbjct: 124 RHCHNCGVLHRDIKDENILIDLNRGELKLIDFGSGALL---KDTVYTDFDGTRVY 175

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.4 bits (182), Expect = 2e-16
 Identities = 35/176 (19%), Positives = 56/176 (31%), Gaps = 36/176 (20%)

Query: 104 NNYAYDRMIGRGGYGTVFLG-SLSDNKAIAIK---KSRIVYQSQ---IEQCINKVVVLSQ 156
           + Y     +G G +  V      S     A K   K R     +    E    +V +L +
Sbjct: 10  DYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKE 69

Query: 157 INHRNVVGLLGCCLETEVPLLVNEFV----------KLPTISWEVRIRIAAETAE----- 201
           I H NV+ L          +L+ E V          +  +++ E       +        
Sbjct: 70  IQHPNVITLHEVYENKTDVILILELVAGGELFDFLAEKESLTEEEATEFLKQILNGVYYL 129

Query: 202 --------DIKSINILLDDNYTT----KVCDFGASKLVPIDETQLSTMVQGTLGYY 245
                   D+K  NI+L D        K+ DFG +    ID       + GT  + 
Sbjct: 130 HSLQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAH--KIDFGNEFKNIFGTPEFV 183

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]} Length = 305

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.8 bits (180), Expect = 6e-16
 Identities = 38/179 (21%), Positives = 59/179 (32%), Gaps = 38/179 (21%)

Query: 102 ATNNYAYDRMIGRGGYGTVFLG--SLSDNKAIAIKKSRI--VYQSQIEQCINKVVVLSQI 157
           A   Y     IG G YG VF      +  + +A+K+ R+    +      I +V VL  +
Sbjct: 5   ADQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHL 64

Query: 158 ---NHRNVVGLLGCCLETEVPLLVNEFV----------------KLPTISWEVRIRIAAE 198
               H NVV L   C  +         +                  P +  E    +  +
Sbjct: 65  ETFEHPNVVRLFDVCTVSRTDRETKLTLVFEHVDQDLTTYLDKVPEPGVPTETIKDMMFQ 124

Query: 199 TAE-------------DIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTLGY 244
                           D+K  NIL+  +   K+ DFG +++         T V  TL Y
Sbjct: 125 LLRGLDFLHSHRVVHRDLKPQNILVTSSGQIKLADFGLARI--YSFQMALTSVVVTLWY 181

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]} Length = 346

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.3 bits (179), Expect = 1e-15
 Identities = 30/171 (17%), Positives = 63/171 (36%), Gaps = 33/171 (19%)

Query: 104 NNYAYDRMIGRGGYGTVFLG-SLSDNKAIAIKKSRIVYQSQ--IEQCINKVVVLSQINHR 160
             Y   + +G G YG V           +AIKK    +QS+   ++   ++ +L  + H 
Sbjct: 18  AVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMRHE 77

Query: 161 NVVGLLGCCLETEVPLLVNEF--------------VKLPTISWEVRIRIAAETAE----- 201
           NV+GLL      E      +F              +K   +  +    +  +  +     
Sbjct: 78  NVIGLLDVFTPDETLDDFTDFYLVMPFMGTDLGKLMKHEKLGEDRIQFLVYQMLKGLRYI 137

Query: 202 --------DIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTLGY 244
                   D+K  N+ ++++   K+ DFG ++     +++++  V      
Sbjct: 138 HAAGIIHRDLKPGNLAVNEDCELKILDFGLARQA---DSEMTGYVVTRWYR 185

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.0 bits (178), Expect = 1e-15
 Identities = 27/195 (13%), Positives = 67/195 (34%), Gaps = 50/195 (25%)

Query: 101 IATNNYAYDRMIGRGGYGTVFLG--------SLSDNKAIAIKK-SRIVYQSQIEQCINKV 151
           +  +     + +G G +G V L           +    +A+K       +  +   I+++
Sbjct: 10  LPRDRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEM 69

Query: 152 VVLSQI-NHRNVVGLLGCCLETEVPLLVNEFV--------------------------KL 184
            ++  I  H+N++ LLG C +     ++ E+                             
Sbjct: 70  EMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPE 129

Query: 185 PTISWEVRIRIAAETAE-------------DIKSINILLDDNYTTKVCDFGASKLVPIDE 231
             +S +  +  A + A              D+ + N+L+ ++   K+ DFG ++ +   +
Sbjct: 130 EQLSSKDLVSCAYQVARGMEYLASKKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHID 189

Query: 232 TQLSTMV-QGTLGYY 245
               T   +  + + 
Sbjct: 190 YYKKTTNGRLPVKWM 204

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 72.9 bits (178), Expect = 1e-15
 Identities = 34/171 (19%), Positives = 60/171 (35%), Gaps = 27/171 (15%)

Query: 104 NNYAYDRMIGRGGYGTVFLG-SLSDNKAIAIK---KSRIVYQSQIEQCINKVVVLSQINH 159
           + +   + +G G +G V L          A+K   K ++V   QIE  +N+  +L  +N 
Sbjct: 41  DQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNF 100

Query: 160 RNVVGLLGCCLETEVPLLVNEF----------VKLPTISWEVRIRIAAETAE-------- 201
             +V L     +     +V E+           ++   S       AA+           
Sbjct: 101 PFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLHSL 160

Query: 202 -----DIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTLGYYLH 247
                D+K  N+L+D     +V DFG +K V      L    +      + 
Sbjct: 161 DLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGRTWTLCGTPEALAPEIIL 211

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]} Length = 328

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

 Score = 70.6 bits (172), Expect = 7e-15
 Identities = 30/167 (17%), Positives = 68/167 (40%), Gaps = 30/167 (17%)

Query: 104 NNYAYDRMIGRGGYGTVFLG-SLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQIN-HRN 161
           ++Y   R +GRG Y  VF   ++++N+ + +K  + V + +I++ I    +L  +    N
Sbjct: 35  DDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPVKKKKIKREIK---ILENLRGGPN 91

Query: 162 VVGLLGCCLE--TEVPLLVNEFVK-------LPTISWEVRIRIAAETAE----------- 201
           ++ L     +  +  P LV E V          T++         E  +           
Sbjct: 92  IITLADIVKDPVSRTPALVFEHVNNTDFKQLYQTLTDYDIRFYMYEILKALDYCHSMGIM 151

Query: 202 --DIKSINILLD-DNYTTKVCDFGASKLVPIDETQLSTMVQGTLGYY 245
             D+K  N+++D ++   ++ D+G ++       Q   +   +  + 
Sbjct: 152 HRDVKPHNVMIDHEHRKLRLIDWGLAEF--YHPGQEYNVRVASRYFK 196

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]} Length = 355

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.7 bits (172), Expect = 9e-15
 Identities = 35/170 (20%), Positives = 65/170 (38%), Gaps = 31/170 (18%)

Query: 104 NNYAYDRMIGRGGYGTVFLG-SLSDNKAIAIKKSRIVYQSQ--IEQCINKVVVLSQINHR 160
             Y   + IG G  G V        ++ +AIKK    +Q+Q   ++   ++V++  +NH+
Sbjct: 17  KRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHK 76

Query: 161 NVVGLLGCCL------ETEVPLLVNEFVK-------LPTISWEVRIRIAAETAE------ 201
           N++ LL          E +   LV E +           +  E    +  +         
Sbjct: 77  NIISLLNVFTPQKTLEEFQDVYLVMELMDANLCQVIQMELDHERMSYLLYQMLCGIKHLH 136

Query: 202 -------DIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTLGY 244
                  D+K  NI++  + T K+ DFG ++      + + T    T  Y
Sbjct: 137 SAGIIHRDLKPSNIVVKSDCTLKILDFGLART--AGTSFMMTPYVVTRYY 184

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.2 bits (171), Expect = 1e-14
 Identities = 31/167 (18%), Positives = 58/167 (34%), Gaps = 38/167 (22%)

Query: 105 NYAYDRMIGRGGYGTVFLG-SLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVV 163
           +Y   ++IG G +G V+        + +AIKK              ++ ++ +++H N+V
Sbjct: 21  SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVL----QDKRFKNRELQIMRKLDHCNIV 76

Query: 164 GLLGCCLETEVP------LLVNEFV-------------KLPTISWEVRIRIAAETAE--- 201
            L      +          LV ++V                T+          +      
Sbjct: 77  RLRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLA 136

Query: 202 ----------DIK-SINILLDDNYTTKVCDFGASKLVPIDETQLSTM 237
                     DIK    +L  D    K+CDFG++K +   E  +S +
Sbjct: 137 YIHSFGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGEPNVSYI 183

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 67.2 bits (163), Expect = 9e-14
 Identities = 33/181 (18%), Positives = 65/181 (35%), Gaps = 37/181 (20%)

Query: 98  ELKIATNNYAYDRMIGRGGYGTVFLG-SLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQ 156
           EL++  N Y   R IG G +G ++LG  ++  + +AIK   +  +++  Q   +  +   
Sbjct: 2   ELRVG-NRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECV--KTKHPQLHIESKIYKM 58

Query: 157 INHRNVVGLLG-CCLETEVPLLVNEFV----------KLPTISWEVRIRIAAETAE---- 201
           +     +  +  C  E +  ++V E +               S +  + +A +       
Sbjct: 59  MQGGVGIPTIRWCGAEGDYNVMVMELLGPSLEDLFNFCSRKFSLKTVLLLADQMISRIEY 118

Query: 202 ---------DIKSINIL---LDDNYTTKVCDFGASKLVPIDET------QLSTMVQGTLG 243
                    D+K  N L           + DFG +K      T      + +  + GT  
Sbjct: 119 IHSKNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDARTHQHIPYRENKNLTGTAR 178

Query: 244 Y 244
           Y
Sbjct: 179 Y 179

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.6 bits (159), Expect = 4e-13
 Identities = 45/180 (25%), Positives = 64/180 (35%), Gaps = 32/180 (17%)

Query: 100 KIATNNYAYDRMIGRGGYGTVFLG----SLSDNKAIAIK---KSRIVYQSQ-IEQCINKV 151
           K+   N+   +++G G YG VFL          K  A+K   K+ IV +++  E    + 
Sbjct: 20  KVGIENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTER 79

Query: 152 VVLSQINHRNVVGLLGCCLETEVPL-----------LVNEFVKLPTISWEVRIRIAAETA 200
            VL  I     +  L    +TE  L           L     +    +         E  
Sbjct: 80  QVLEHIRQSPFLVTLHYAFQTETKLHLILDYINGGELFTHLSQRERFTEHEVQIYVGEIV 139

Query: 201 E-------------DIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQGTLGYYLH 247
                         DIK  NILLD N    + DFG SK    DET+ +    GT+ Y   
Sbjct: 140 LALEHLHKLGIIYRDIKLENILLDSNGHVVLTDFGLSKEFVADETERAYDFCGTIEYMAP 199

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]} Length = 335

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.3 bits (156), Expect = 1e-12
 Identities = 25/170 (14%), Positives = 51/170 (30%), Gaps = 39/170 (22%)

Query: 109 DRMIGRGGYGTVFLG-SLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLG 167
            +++G G  G V    +    +  A+K  +   +++ E  ++           ++V ++ 
Sbjct: 17  SQVLGLGINGKVLQIFNKRTQEKFALKMLQDCPKARREVELH----WRASQCPHIVRIVD 72

Query: 168 CC----LETEVPLLVNEFV------------KLPTISWEVRIRIAAETAE---------- 201
                    +  L+V E +                 +      I     E          
Sbjct: 73  VYENLYAGRKCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHSINI 132

Query: 202 ---DIKSINILLD---DNYTTKVCDFGASKLVPIDETQLSTMVQGTLGYY 245
              D+K  N+L      N   K+ DFG +K      +  +     T  Y 
Sbjct: 133 AHRDVKPENLLYTSKRPNAILKLTDFGFAKETTSHNSLTTPCY--TPYYV 180

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]} Length = 348

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.1 bits (155), Expect = 1e-12
 Identities = 28/152 (18%), Positives = 56/152 (36%), Gaps = 30/152 (19%)

Query: 103 TNNYAYDRMIGRGGYGTVFLG-SLSDNKAIAIKKSRIVYQS--QIEQCINKVVVLSQINH 159
              Y     +G G YG+V           +A+KK    +QS    ++   ++ +L  + H
Sbjct: 17  PERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKH 76

Query: 160 RNVVGLLGCC--------------LETEVPLLVNEFVKLPTISWEVRIRIAAETAE---- 201
            NV+GLL                 +   +   +N  VK   ++ +    +  +       
Sbjct: 77  ENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKY 136

Query: 202 ---------DIKSINILLDDNYTTKVCDFGAS 224
                    D+K  N+ ++++   K+ DFG +
Sbjct: 137 IHSADIIHRDLKPSNLAVNEDCELKILDFGLA 168

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 63.3 bits (153), Expect = 2e-12
 Identities = 34/177 (19%), Positives = 56/177 (31%), Gaps = 38/177 (21%)

Query: 104 NNYAYDRMIGRGGYGTVFLG-SLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRN- 161
            +Y   R IG G +G +F G +L +N+ +AIK      +S   Q  ++      +     
Sbjct: 5   VHYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKF--EPRRSDAPQLRDEYRTYKLLAGCTG 62

Query: 162 VVGLLGCCLETEVPLLVNEFV----------KLPTISWEVRIRIAAETAE---------- 201
           +  +     E    +LV + +               S +     A +             
Sbjct: 63  IPNVYYFGQEGLHNVLVIDLLGPSLEDLLDLCGRKFSVKTVAMAAKQMLARVQSIHEKSL 122

Query: 202 ---DIKSINILLDDNYTT-----KVCDFGASKLVPIDET------QLSTMVQGTLGY 244
              DIK  N L+    +       V DFG  K      T      +    + GT  Y
Sbjct: 123 VYRDIKPDNFLIGRPNSKNANMIYVVDFGMVKFYRDPVTKQHIPYREKKNLSGTARY 179

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]} Length = 191

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 50.6 bits (120), Expect = 2e-08
 Identities = 24/172 (13%), Positives = 49/172 (28%), Gaps = 33/172 (19%)

Query: 106 YAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCI----------NKVVVLS 155
            A  +++G G    VF           +K  ++ + S  +                +  +
Sbjct: 2   DAIGKLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSA 61

Query: 156 QINHRNVVGLLGCC----LETEVPLLVNEFVKLPTISW---EVRIRIAAETAE------- 201
           +   R +  L G         E   ++ E +    +     E    +     E       
Sbjct: 62  RNEFRALQKLQGLAVPKVYAWEGNAVLMELIDAKELYRVRVENPDEVLDMILEEVAKFYH 121

Query: 202 ------DIKSINILLDDNYTTKVCDFGASKLV--PIDETQLSTMVQGTLGYY 245
                 D+   N+L+ +     + DF  S  V        L   V+  + Y+
Sbjct: 122 RGIVHGDLSQYNVLVSE-EGIWIIDFPQSVEVGEEGWREILERDVRNIITYF 172

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 362

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.2 bits (121), Expect = 4e-08
 Identities = 16/73 (21%), Positives = 32/73 (43%), Gaps = 2/73 (2%)

Query: 106 YAYDRMIGRGGYGTVFLG-SLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVG 164
           Y   R +G G + TV+L   + +N  +A+K  R   +   E   +++ +L ++N  +   
Sbjct: 15  YILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGD-KVYTEAAEDEIKLLQRVNDADNTK 73

Query: 165 LLGCCLETEVPLL 177
                    + LL
Sbjct: 74  EDSMGANHILKLL 86

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	256
d1qpca_	272	Lymphocyte kinase (lck) {Human (Homo sapiens) [Tax	99.98
d1opja_	287	Abelsone tyrosine kinase (abl) {Mouse (Mus musculu	99.97
d1sm2a_	263	Tyrosine-protein kinase Itk/Tsk {Human (Homo sapie	99.97
d1yhwa1	293	pak1 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1fmka3	285	c-src tyrosine kinase {Human (Homo sapiens) [TaxId	99.97
d1nvra_	271	Cell cycle checkpoint kinase chk1 {Human (Homo sap	99.97
d1k2pa_	258	Bruton's tyrosine kinase (Btk) {Human (Homo sapien	99.96
d2jfla1	288	STE20-like serine/threonine-protein kinase, SLK {H	99.96
d1uwha_	276	B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1s9ja_	322	Dual specificity mitogen-activated protein kinase	99.96
d2j4za1	263	Aurora-related kinase 1 (aurora-2) {Human (Homo sa	99.96
d1mqba_	283	epha2 receptor tyrosine kinase {Human (Homo sapien	99.96
d1uu3a_	288	3-phosphoinositide dependent protein kinase-1 Pdk1	99.96
d1o6la_	337	Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9	99.96
d2java1	269	Serine/threonine-protein kinase Nek2 {Human (Homo	99.96
d1jpaa_	299	ephb2 receptor tyrosine kinase {Mouse (Mus musculu	99.96
d1mp8a_	273	Focal adhesion kinase 1 (fak) {Human (Homo sapiens	99.96
d1rjba_	325	Fl cytokine receptor {Human (Homo sapiens) [TaxId:	99.96
d1fota_	316	cAMP-dependent PK, catalytic subunit {Baker's yeas	99.96
d1koaa2	350	Twitchin, kinase domain {Caenorhabditis elegans, p	99.96
d1koba_	352	Twitchin, kinase domain {California sea hare (Aply	99.96
d1u5ra_	309	Serine/threonine protein kinase TAO2 {Rat (Rattus	99.96
d1u59a_	285	Tyrosine-protein kinase ZAP-70 {Human (Homo sapien	99.96
d1t4ha_	270	Protein kinase wnk1 {Human (Homo sapiens) [TaxId:	99.96
d1lufa_	301	Musk tyrosine kinase {Rat (Rattus norvegicus) [Tax	99.96
d1a06a_	307	Calmodulin-dependent protein kinase {Rat (Rattus n	99.95
d1p4oa_	308	Insulin-like growth factor 1 receptor {Human (Homo	99.95
d1jksa_	293	Death-associated protein kinase, Dap {Human (Homo	99.95
d1t46a_	311	c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]	99.95
d1rdqe_	350	cAMP-dependent PK, catalytic subunit {Mouse (Mus m	99.95
d1xbba_	277	Tyrosine-protein kinase SYK {Human (Homo sapiens)	99.95
d1ywna1	299	Vascular endothelial growth factor receptor 2 (kdr	99.95
d1xjda_	320	Protein kinase C, theta type {Human (Homo sapiens)	99.95
d1phka_	277	gamma-subunit of glycogen phosphorylase kinase (Ph	99.95
d1tkia_	321	Titin, kinase domain {Human (Homo sapiens) [TaxId:	99.95
d1gz8a_	298	Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [T	99.94
d1byga_	262	Carboxyl-terminal src kinase (csk) {Human (Homo sa	99.94
d1r0pa_	311	Hepatocyte growth factor receptor, c-MET {Human (H	99.94
d1ob3a_	286	Cyclin-dependent PK, CDK2 {(Plasmodium falciparum)	99.94
d1omwa3	364	G-protein coupled receptor kinase 2 {Cow (Bos taur	99.94
d1ua2a_	299	Cell division protein kinase 7, CDK7 {Human (Homo	99.94
d1xkka_	317	EGF receptor tyrosine kinase, Erbb-1 {Human (Homo	99.94
d1fvra_	309	Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}	99.94
d1o6ya_	277	Mycobacterial protein kinase PknB, catalytic domai	99.94
d1vjya_	303	Type I TGF-beta receptor R4 {Human (Homo sapiens)	99.94
d1u46a_	273	Activated CDC42 kinase 1, ACK1 {Human (Homo sapien	99.94
d1fgka_	299	Fibroblast growth factor receptor 1 {Human (Homo s	99.93
d2ozaa1	335	MAP kinase activated protein kinase 2, mapkap2 {Hu	99.92
d1unla_	292	Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [T	99.92
d1xwsa_	273	Proto-oncogene serine/threonine-protein kinase Pim	99.92
d1cm8a_	346	MAP kinase p38-gamma {Human (Homo sapiens) [TaxId:	99.92
d3blha1	318	Cell division protein kinase 9, CDK9 {Human (Homo	99.92
d1q5ka_	350	Glycogen synthase kinase-3 beta (Gsk3b) {Human (Ho	99.91
d3bqca1	328	Protein kinase CK2, alpha subunit {Rattus norvegic	99.91
d1pmea_	345	MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606	99.91
d1blxa_	305	Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [T	99.91
d1csna_	293	Casein kinase-1, CK1 {Fission yeast (Schizosacchar	99.91
d1vzoa_	322	Ribosomal protein S6 kinase alpha 5, Msk1 {Human (	99.9
d2b1pa1	355	c-jun N-terminal kinase (jnk3s) {Human (Homo sapie	99.9
d1ckia_	299	Casein kinase-1, CK1 {Rat (Rattus norvegicus) [Tax	99.9
d2gfsa1	348	MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]	99.87
d1q8ya_	362	Sky1p {Baker's yeast (Saccharomyces cerevisiae) [T	99.78
d1zara2	191	Rio2 serine protein kinase C-terminal domain {Arch	99.74
d1j7la_	263	Type IIIa 3',5"-aminoglycoside phosphotransferase	97.97
d1nd4a_	255	Aminoglycoside 3'-phosphotransferase IIa (Kanamyci	97.49
d2pula1	392	Methylthioribose kinase MtnK {Bacillus subtilis [T	97.28
d1zyla1	325	RdoA {Escherichia coli [TaxId: 562]}	96.22
d1nw1a_	395	Choline kinase {Caenorhabditis elegans [TaxId: 623	93.17
d2ppqa1	316	Homoserine kinase ThrB {Agrobacterium tumefaciens	88.14

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=4.1e-33  Score=229.19  Aligned_cols=160  Identities=18%  Similarity=0.355  Sum_probs=135.5

Q ss_pred             ChHHHHhhcCCCcccceeeeeCceEEEEEEECCCcEEEEEEecccChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCE
Q 047066           95 TAGELKIATNNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEV  174 (256)
Q Consensus        95 ~~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~  174 (256)
                      ..++|+++.++|++.+.||+|+||.||+|.++++..||||+++.... ..+.+.+|+.++++++||||++++|++.+ +.
T Consensus         4 ~~~~wei~~~~~~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~~~~~~~-~~~~~~~E~~~l~~l~HpnIv~~~g~~~~-~~   81 (272)
T d1qpca_           4 WEDEWEVPRETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSM-SPDAFLAEANLMKQLQHQRLVRLYAVVTQ-EP   81 (272)
T ss_dssp             TTCTTBCCGGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTSS-CHHHHHHHHHHHHHCCCTTBCCEEEEECS-SS
T ss_pred             CCCCeecCHHHeEEeEEEecCCCcEEEEEEECCCCEEEEEEEccCcC-CHHHHHHHHHHHHhCCCCCEeEEEeeecc-CC
Confidence            44678888999999999999999999999998888999999875433 34679999999999999999999998754 56


Q ss_pred             EEEEEecCCCCCC------------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCC
Q 047066          175 PLLVNEFVKLPTI------------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPI  229 (256)
Q Consensus       175 ~~lv~e~~~~~~l------------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~  229 (256)
                      .++||||+++|+|            ++...+.++.|++             |||||+|||+++++.+||+|||+|+.+..
T Consensus        82 ~~iv~Ey~~~g~L~~~~~~~~~~~l~~~~~~~i~~qi~~gl~~lH~~~ivHrDiKp~NIll~~~~~~Kl~DFGla~~~~~  161 (272)
T d1qpca_          82 IYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNYIHRDLRAANILVSDTLSCKIADFGLARLIED  161 (272)
T ss_dssp             CEEEEECCTTCBHHHHTTSHHHHTCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTSCEEECCCTTCEECSS
T ss_pred             eEEEEEeCCCCcHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcccCccchhheeeecccceeeccccceEEccC
Confidence            7999999999774            6677778888876             69999999999999999999999998876


Q ss_pred             CCceeeeeeeecccc----cccccCCCCCCC
Q 047066          230 DETQLSTMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       230 ~~~~~~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      +.....+...||+.|    .+.++.++.|||
T Consensus       162 ~~~~~~~~~~gt~~y~APE~~~~~~~~~~sD  192 (272)
T d1qpca_         162 NEYTAREGAKFPIKWTAPEAINYGTFTIKSD  192 (272)
T ss_dssp             SCEECCTTCCCCTTTSCHHHHHHCEECHHHH
T ss_pred             CccccccccCCcccccChHHHhCCCCCchhh
Confidence            555545556799999    566677888776

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=4.3e-33  Score=230.68  Aligned_cols=160  Identities=23%  Similarity=0.382  Sum_probs=136.5

Q ss_pred             hHHHHhhcCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCE
Q 047066           96 AGELKIATNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEV  174 (256)
Q Consensus        96 ~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~  174 (256)
                      .++|++..++|++.+.||+|+||+||+|.++ +++.||||+++... ...+++.+|+.+|++++||||++++++|.+.+.
T Consensus         9 ~~~wei~~~~~~~~~~iG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~-~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~   87 (287)
T d1opja_           9 YDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDT-MEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPP   87 (287)
T ss_dssp             CCTTBCCGGGEEEEEETTTTTTSSEEEEEEGGGTEEEEEEECCTTC-SCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSS
T ss_pred             CcccEecHHHeEEeeEEeeCCCeEEEEEEECCCCeEEEEEEECCcc-chHHHHHHHHHHHHhCCCCCEecCCccEeeCCe
Confidence            3468888899999999999999999999976 58899999986543 345779999999999999999999999999999


Q ss_pred             EEEEEecCCCCCC------------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCC
Q 047066          175 PLLVNEFVKLPTI------------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPI  229 (256)
Q Consensus       175 ~~lv~e~~~~~~l------------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~  229 (256)
                      .+++|||+++|++            ++...+.++.|++             |||||+|||+++++.+||+|||+|+....
T Consensus        88 ~~iv~E~~~~g~l~~~l~~~~~~~~~~~~~~~i~~qi~~gL~yLH~~~iiHrDlKp~NILl~~~~~~Kl~DFG~a~~~~~  167 (287)
T d1opja_          88 FYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTG  167 (287)
T ss_dssp             CEEEEECCTTCBHHHHHHHSCTTTSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGGCEEECCCCCTTTCCS
T ss_pred             eEEEeecccCcchHHHhhhccccchHHHHHHHHHHHHHHHHHHHHHCCcccCccccCeEEECCCCcEEEccccceeecCC
Confidence            9999999998664            5666677777766             69999999999999999999999998766


Q ss_pred             CCceeeeeeeecccc----cccccCCCCCCC
Q 047066          230 DETQLSTMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       230 ~~~~~~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      +.........||+.|    .+.++.+|.|+|
T Consensus       168 ~~~~~~~~~~g~~~y~aPE~~~~~~~~~k~D  198 (287)
T d1opja_         168 DTYTAHAGAKFPIKWTAPESLAYNKFSIKSD  198 (287)
T ss_dssp             SSSEEETTEEECGGGCCHHHHHHCCCSHHHH
T ss_pred             CCceeeccccccccccChHHHcCCCCCchhh
Confidence            655555556799988    667788888876

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=3.1e-32  Score=222.84  Aligned_cols=153  Identities=26%  Similarity=0.380  Sum_probs=119.4

Q ss_pred             cCCCcccceeeeeCceEEEEEEECCCcEEEEEEecccChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEecC
Q 047066          103 TNNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEFV  182 (256)
Q Consensus       103 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~  182 (256)
                      .++|++.+.||+|+||+||+|.+++++.||||+++.... ..+++.+|+.++++++||||++++|+|...+..++||||+
T Consensus         4 p~~~~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~i~~~~~-~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~~~lv~E~~   82 (263)
T d1sm2a_           4 PSELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAM-SEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVFEFM   82 (263)
T ss_dssp             CSCEEEEEEEECCSSCCEEEEEETTTEEEEEEECCSSSS-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEECC
T ss_pred             hHHcEEEEEEeeCCCeEEEEEEECCCCEEEEEEECCCcC-cHHHHHHHHHHHHhcCCCCcccccceeccCCceEEEEEec
Confidence            467899999999999999999998888999999875433 3467999999999999999999999999999999999999


Q ss_pred             CCCCC-----------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceeeeee
Q 047066          183 KLPTI-----------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMV  238 (256)
Q Consensus       183 ~~~~l-----------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~~~  238 (256)
                      ++|+|           ++...+.++.|++             |||||+|||+++++.+||+|||+|+.............
T Consensus        83 ~~g~L~~~l~~~~~~~~~~~~~~i~~qia~gl~~lH~~~iiHrDlKp~Nill~~~~~~Kl~DFGla~~~~~~~~~~~~~~  162 (263)
T d1sm2a_          83 EHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLEEACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGT  162 (263)
T ss_dssp             TTCBHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHTTCCCTTCSGGGEEECGGGCEEECSCC----------------
T ss_pred             CCCcHHHHhhccccCCCHHHHHHHHHHHHHHHHhhhccceeecccchhheeecCCCCeEecccchheeccCCCceeecce
Confidence            98664           5666777888877             69999999999999999999999998765544444456


Q ss_pred             eecccc----cccccCCCCCCC
Q 047066          239 QGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       239 ~Gt~~y----~~~~~~~t~ksD  256 (256)
                      .||+.|    .+.++.+|.|+|
T Consensus       163 ~gt~~y~aPE~l~~~~~~~k~D  184 (263)
T d1sm2a_         163 KFPVKWASPEVFSFSRYSSKSD  184 (263)
T ss_dssp             --CTTSCCHHHHTTCCCCHHHH
T ss_pred             ecCcccCChHHhcCCCCCchhh
Confidence            799999    667788888877

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.5e-31  Score=220.43  Aligned_cols=152  Identities=23%  Similarity=0.307  Sum_probs=128.4

Q ss_pred             CCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEecC
Q 047066          104 NNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEFV  182 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~  182 (256)
                      ++|++.+.||+|+||+||+|..+ +|+.||+|++........+.+.+|+.+++.++||||+++++++.+.+..++||||+
T Consensus        20 ~~Y~~~~~iG~G~fg~Vy~a~~~~~~~~vAvK~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~ivmEy~   99 (293)
T d1yhwa1          20 KKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEYL   99 (293)
T ss_dssp             TTBCSCEECCCSSSCEEEEEEBTTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECC
T ss_pred             cccEEEEEEecCcCcEEEEEEECCCCCEEEEEEEecccChHHHHHHHHHHHHHhCCCCCEeeEeEEEEECCEEEEEEEec
Confidence            57999999999999999999964 68999999987655445578999999999999999999999999999999999999


Q ss_pred             CCCCC---------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceeeeeeee
Q 047066          183 KLPTI---------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQG  240 (256)
Q Consensus       183 ~~~~l---------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~~~~G  240 (256)
                      ++|+|         +......++.|++             |||||+|||++.++.+||+|||+|+.+..+... ....+|
T Consensus       100 ~gg~L~~~~~~~~l~~~~~~~i~~qi~~aL~yLH~~~iiHrDiKp~NILl~~~~~vkl~DFG~a~~~~~~~~~-~~~~~g  178 (293)
T d1yhwa1         100 AGGSLTDVVTETCMDEGQIAAVCRECLQALEFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSK-RSTMVG  178 (293)
T ss_dssp             TTCBHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTCCEEECCCTTCEECCSTTCC-BCCCCS
T ss_pred             CCCcHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHCCCcccCCcHHHeEECCCCcEeeccchhheeecccccc-cccccc
Confidence            99775         4555566666665             799999999999999999999999987644333 344569


Q ss_pred             cccc----cccccCCCCCCC
Q 047066          241 TLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       241 t~~y----~~~~~~~t~ksD  256 (256)
                      |+.|    .+.++.++.++|
T Consensus       179 t~~Y~aPE~~~~~~~~~~~D  198 (293)
T d1yhwa1         179 TPYWMAPEVVTRKAYGPKVD  198 (293)
T ss_dssp             CGGGCCHHHHSSSCBCTHHH
T ss_pred             CCCccChhhhcCCCCCchhc
Confidence            9999    666777888876

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=6.1e-32  Score=223.34  Aligned_cols=161  Identities=21%  Similarity=0.365  Sum_probs=128.5

Q ss_pred             cChHHHHhhcCCCcccceeeeeCceEEEEEEECCCcEEEEEEecccChhHHHHHHHHHHHHHhCCCCcccceeeEEEECC
Q 047066           94 FTAGELKIATNNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLETE  173 (256)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~  173 (256)
                      ...++|++..++|++.+.||+|+||+||+|.++++..||||.++.... ..+.|.+|+.++++++||||++++|++.+ +
T Consensus         7 ~~~~~~~i~~~~~~i~~~iG~G~fg~Vy~~~~~~~~~vAiK~l~~~~~-~~~~~~~E~~~l~~l~h~nIv~~~g~~~~-~   84 (285)
T d1fmka3           7 LAKDAWEIPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTM-SPEAFLQEAQVMKKLRHEKLVQLYAVVSE-E   84 (285)
T ss_dssp             SSTTCSBCCGGGEEEEEEEEECSSCEEEEEEETTTEEEEEEECCTTSS-CHHHHHHHHHHHHHCCCTTBCCEEEEECS-S
T ss_pred             CCCcceEcCHHHEEEeeEEeeCCCeEEEEEEECCCCEEEEEEECcccC-CHHHHHHHHHHHHhcccCCEeEEEEEEec-C
Confidence            445677788899999999999999999999998888999999865443 34779999999999999999999999854 5


Q ss_pred             EEEEEEecCCCCC------------CCHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecC
Q 047066          174 VPLLVNEFVKLPT------------ISWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVP  228 (256)
Q Consensus       174 ~~~lv~e~~~~~~------------l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~  228 (256)
                      ..++||||+++|+            +++...+.++.+++             |||||+|||++.++.+||+|||+|+.+.
T Consensus        85 ~~~lv~Ey~~~g~l~~~~~~~~~~~l~~~~~~~i~~~i~~gl~~LH~~~ivH~DlKp~NIll~~~~~~kl~DfGla~~~~  164 (285)
T d1fmka3          85 PIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIE  164 (285)
T ss_dssp             SCEEEECCCTTCBHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGGCEEECCCCTTC---
T ss_pred             CeEEEEEecCCCchhhhhhhcccccchHHHHHHHHHHHHHHHHHHhhhheecccccceEEEECCCCcEEEcccchhhhcc
Confidence            6899999999865            57778888888877             5999999999999999999999999876


Q ss_pred             CCCceeeeeeeecccc----cccccCCCCCCC
Q 047066          229 IDETQLSTMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       229 ~~~~~~~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      ...........||+.|    ++..+.+|.++|
T Consensus       165 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~ksD  196 (285)
T d1fmka3         165 DNEYTARQGAKFPIKWTAPEAALYGRFTIKSD  196 (285)
T ss_dssp             -----------CCGGGSCHHHHHHCCCCHHHH
T ss_pred             CCCceeeccccccccccChHHHhCCCCCcHHh
Confidence            5554444556799999    667788888876

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=4.7e-31  Score=216.47  Aligned_cols=153  Identities=24%  Similarity=0.340  Sum_probs=122.4

Q ss_pred             CCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC-hhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEec
Q 047066          104 NNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY-QSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEF  181 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~  181 (256)
                      ++|++.+.||+|+||+||+|..+ +++.||+|.+.... ....+.+.+|+.++++++||||+++++++.+++..++||||
T Consensus         5 ~dy~~~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~~~~~~~~~~~~~ivmEy   84 (271)
T d1nvra_           5 EDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLFLEY   84 (271)
T ss_dssp             TEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC-------CHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred             cceEEEEEEecCcCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHhCCCCCEeeEeeeeccCceeEEEEec
Confidence            57999999999999999999975 68999999986543 33446789999999999999999999999999999999999


Q ss_pred             CCCCC----------CCHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCce-eeee
Q 047066          182 VKLPT----------ISWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQ-LSTM  237 (256)
Q Consensus       182 ~~~~~----------l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~-~~~~  237 (256)
                      +++|+          +++.....++.|++             |||||+|||+++++.+||+|||+|+.+..+... ..+.
T Consensus        85 ~~gg~L~~~l~~~~~l~e~~~~~i~~qi~~al~ylH~~~IiHrDiKp~NILl~~~~~~KL~DFG~a~~~~~~~~~~~~~~  164 (271)
T d1nvra_          85 CSGGELFDRIEPDIGMPEPDAQRFFHQLMAGVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNK  164 (271)
T ss_dssp             CTTEEGGGGSBTTTBCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECTTCCEEECCCTTCEECEETTEECCBCC
T ss_pred             cCCCcHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHcCCccCcccHHHEEECCCCCEEEccchhheeeccCCccccccc
Confidence            98855          46677777777766             799999999999999999999999987544322 2345


Q ss_pred             eeecccc----cccccCC-CCCCC
Q 047066          238 VQGTLGY----YLHTSQG-TLNKE  256 (256)
Q Consensus       238 ~~Gt~~y----~~~~~~~-t~ksD  256 (256)
                      .+||+.|    .+.+..+ +.++|
T Consensus       165 ~~GT~~Y~APE~~~~~~~~~~~~D  188 (271)
T d1nvra_         165 MCGTLPYVAPELLKRREFHAEPVD  188 (271)
T ss_dssp             CCSCGGGSCTHHHHCSSBCHHHHH
T ss_pred             eeeCcCccCHhHhcCCCCCCCcee
Confidence            6799999    3444444 45555

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2.3e-30  Score=211.00  Aligned_cols=152  Identities=21%  Similarity=0.331  Sum_probs=130.2

Q ss_pred             CCCcccceeeeeCceEEEEEEECCCcEEEEEEecccChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEecCC
Q 047066          104 NNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEFVK  183 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~  183 (256)
                      ++|++.+.||+|+||+||+|++++++.||||.++.... ..+++.+|+.++++++||||++++|+|.+++.+++||||++
T Consensus         4 ~~~~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~l~~~~~-~~~~~~~Ev~~~~~l~HpnIv~~~g~~~~~~~~~iv~Ey~~   82 (258)
T d1k2pa_           4 KDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSM-SEDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFIITEYMA   82 (258)
T ss_dssp             CCCCCCCCCCEETTEEEEEEEETTTEEEEEEEEESSSS-CHHHHHHHHHHHHTCCCTTBCCEEEEECCSSSEEEEEECCT
T ss_pred             HHCEEeEEEecCCCeEEEEEEECCCCEEEEEEECcCcC-CHHHHHHHHHHHHhcCCCceeeEEEEEeeCCceEEEEEccC
Confidence            68999999999999999999998889999999875443 34679999999999999999999999999999999999998


Q ss_pred             CCC-----------CCHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceeeeeee
Q 047066          184 LPT-----------ISWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMVQ  239 (256)
Q Consensus       184 ~~~-----------l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~~~~  239 (256)
                      +|+           +++..+..++.|++             |||||+|||+++++.+||+|||+|+.+............
T Consensus        83 ~g~l~~~~~~~~~~~~~~~~~~i~~qi~~gl~~LH~~~iiH~dlk~~Nill~~~~~~kl~DfG~a~~~~~~~~~~~~~~~  162 (258)
T d1k2pa_          83 NGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLESKQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEYTSSVGSK  162 (258)
T ss_dssp             TEEHHHHHHSGGGCCCHHHHHHHHHHHHHHHHHHHHTTBCCSCCSGGGEEECTTCCEEECCCSSCCBCSSSSCCCCCCSC
T ss_pred             CCcHHHhhhccccCCcHHHHHHHHHHHHHHHHHHhhcCcccccccceeEEEcCCCcEEECcchhheeccCCCceeecccC
Confidence            855           46677778888877             599999999999999999999999887655444444456


Q ss_pred             ecccc----cccccCCCCCCC
Q 047066          240 GTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       240 Gt~~y----~~~~~~~t~ksD  256 (256)
                      ||+.|    .+..+.+|.|||
T Consensus       163 ~t~~y~aPE~~~~~~~~~ksD  183 (258)
T d1k2pa_         163 FPVRWSPPEVLMYSKFSSKSD  183 (258)
T ss_dssp             CCGGGCCHHHHHHCCCCHHHH
T ss_pred             CCCCcCCcHHhcCCCCCccee
Confidence            99999    566778888876

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.6e-30  Score=215.11  Aligned_cols=153  Identities=18%  Similarity=0.212  Sum_probs=126.0

Q ss_pred             cCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEec
Q 047066          103 TNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEF  181 (256)
Q Consensus       103 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~  181 (256)
                      .+.|++.+.||+|+||+||+|..+ ++..||+|.+........+.+.+|+++|++++||||+++++++.+.+..++||||
T Consensus        11 ~d~Y~i~~~iG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lvmEy   90 (288)
T d2jfla1          11 EDFWEIIGELGDGAFGKVYKAQNKETSVLAAAKVIDTKSEEELEDYMVEIDILASCDHPNIVKLLDAFYYENNLWILIEF   90 (288)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECSSSGGGGGTHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred             ccCeEEeEEEeeCCCcEEEEEEECCCCeEEEEEEECcCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCeEEEEEec
Confidence            357899999999999999999975 6889999998766666667899999999999999999999999999999999999


Q ss_pred             CCCCC-----------CCHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceeeee
Q 047066          182 VKLPT-----------ISWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTM  237 (256)
Q Consensus       182 ~~~~~-----------l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~~  237 (256)
                      +++|+           +++.....++.|++             |||||+|||++.++.+||+|||+|+....... ....
T Consensus        91 ~~~g~L~~~~~~~~~~l~e~~~~~i~~qi~~gL~ylH~~~ivHrDiKp~NIll~~~~~~Kl~DFG~a~~~~~~~~-~~~~  169 (288)
T d2jfla1          91 CAGGAVDAVMLELERPLTESQIQVVCKQTLDALNYLHDNKIIHRDLKAGNILFTLDGDIKLADFGVSAKNTRTIQ-RRDS  169 (288)
T ss_dssp             CTTEEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEECHHHHH-HHTC
T ss_pred             CCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCEEEeecChhheeECCCCCEEEEechhhhccCCCcc-cccc
Confidence            98855           45666666766665             69999999999999999999999987543211 1234


Q ss_pred             eeecccc----cc-----cccCCCCCCC
Q 047066          238 VQGTLGY----YL-----HTSQGTLNKE  256 (256)
Q Consensus       238 ~~Gt~~y----~~-----~~~~~t~ksD  256 (256)
                      .+||+.|    .+     ....+|.|+|
T Consensus       170 ~~Gt~~y~APE~l~~~~~~~~~y~~k~D  197 (288)
T d2jfla1         170 FIGTPYWMAPEVVMCETSKDRPYDYKAD  197 (288)
T ss_dssp             CCSCCTTCCHHHHTTCSTTTSSTTTHHH
T ss_pred             cccccccCCHHHHhhcccCCCCCChhhh
Confidence            5699999    22     3455777776

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.6e-30  Score=213.92  Aligned_cols=156  Identities=23%  Similarity=0.367  Sum_probs=121.9

Q ss_pred             HHHhhcCCCcccceeeeeCceEEEEEEECCCcEEEEEEeccc--ChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEE
Q 047066           98 ELKIATNNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIV--YQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVP  175 (256)
Q Consensus        98 ~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~  175 (256)
                      +|+++.++|++.+.||+|+||+||+|+++  ..||||.++..  .....+.|.+|+.++++++||||+++++++.. +..
T Consensus         2 dwei~~~~~~~~~~lG~G~fg~Vy~~~~~--~~vAvK~~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~~~~~~~~-~~~   78 (276)
T d1uwha_           2 DWEIPDGQITVGQRIGSGSFGTVYKGKWH--GDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTA-PQL   78 (276)
T ss_dssp             CCBCCTTCCCCCSEEEECSSCEEEEEESS--SEEEEEECCCSSCCTTHHHHHHHHHHHHTTCCCTTBCCEEEEECS-SSC
T ss_pred             CcccccccEEEEEEEeeCCCcEEEEEEEC--CEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCEeeeeEEEec-cEE
Confidence            57788899999999999999999999864  35999988643  35566889999999999999999999998754 568


Q ss_pred             EEEEecCCCCC-----------CCHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCC
Q 047066          176 LLVNEFVKLPT-----------ISWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDE  231 (256)
Q Consensus       176 ~lv~e~~~~~~-----------l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~  231 (256)
                      ++||||+++|+           +++...+.++.|++             |||||+|||++.++.+||+|||+|+......
T Consensus        79 ~lv~Ey~~~g~L~~~l~~~~~~~~~~~~~~i~~qi~~gl~yLH~~~ivHrDlKp~NiLl~~~~~~Kl~DFGla~~~~~~~  158 (276)
T d1uwha_          79 AIVTQWCEGSSLYHHLHIIETKFEMIKLIDIARQTAQGMDYLHAKSIIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWS  158 (276)
T ss_dssp             EEEEECCCEEEHHHHHHTSCCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEETTSSEEECCCCCSCC-----
T ss_pred             EEEEecCCCCCHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHhcCCEeccccCHHHEEEcCCCCEEEccccceeeccccC
Confidence            99999998744           57777788888877             6999999999999999999999998775433


Q ss_pred             c-eeeeeeeecccc----ccc---ccCCCCCCC
Q 047066          232 T-QLSTMVQGTLGY----YLH---TSQGTLNKE  256 (256)
Q Consensus       232 ~-~~~~~~~Gt~~y----~~~---~~~~t~ksD  256 (256)
                      . ...+...||+.|    .+.   .+.+|.|||
T Consensus       159 ~~~~~~~~~gt~~y~APE~l~~~~~~~~~~~sD  191 (276)
T d1uwha_         159 GSHQFEQLSGSILWMAPEVIRMQDKNPYSFQSD  191 (276)
T ss_dssp             -------CCCCGGGCCHHHHTTCSSCCCCHHHH
T ss_pred             CcccccccccCcccCCHHHHhcccCCCCCchhh
Confidence            2 233456799999    332   345777776

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.4e-30  Score=218.89  Aligned_cols=153  Identities=21%  Similarity=0.289  Sum_probs=125.0

Q ss_pred             hhcCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEeccc-ChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEE
Q 047066          101 IATNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIV-YQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLV  178 (256)
Q Consensus       101 ~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv  178 (256)
                      +..++|++.+.||+|+||.||+|... +++.||+|.++.. .+...+++.+|+.+|+.++||||++++++|.+.+..++|
T Consensus         3 l~~d~y~~~~~iG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~iV   82 (322)
T d1s9ja_           3 LKDDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISIC   82 (322)
T ss_dssp             CCGGGEEEEEEEECCSSCCEEEEEETTTTEEEEEEEEECCCCTTHHHHHHHHGGGGGGCCCTTBCCEEEEEECSSEEEEE
T ss_pred             CCccCCEEEEEEecCCCeEEEEEEECCCCcEEEEEEEChhhCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEE
Confidence            34578999999999999999999975 6899999998654 344557899999999999999999999999999999999


Q ss_pred             EecCCCCCC----------CHHHHHHHHHHH--------------HhccCCCcEEEcCCCcEEEEecCCceecCCCCcee
Q 047066          179 NEFVKLPTI----------SWEVRIRIAAET--------------AEDIKSINILLDDNYTTKVCDFGASKLVPIDETQL  234 (256)
Q Consensus       179 ~e~~~~~~l----------~~~~~~~~~~~i--------------~rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~  234 (256)
                      |||+++|+|          ++.....++.|+              ||||||+|||+++++.+||+|||+|+.+....   
T Consensus        83 mEy~~gg~L~~~l~~~~~l~~~~~~~~~~qil~aL~yLH~~~~IiHRDiKP~NILl~~~~~vkl~DFGla~~~~~~~---  159 (322)
T d1s9ja_          83 MEHMDGGSLDQVLKKAGRIPEQILGKVSIAVIKGLTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSM---  159 (322)
T ss_dssp             EECCTTEEHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHCCCCSCCSGGGEEECTTCCEEECCCCCCHHHHHHT---
T ss_pred             EEcCCCCcHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHhCCEEccccCHHHeeECCCCCEEEeeCCCccccCCCc---
Confidence            999998664          444444444443              37999999999999999999999999764322   


Q ss_pred             eeeeeecccc----cccccCCCCCCC
Q 047066          235 STMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       235 ~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      .+..+||+.|    .+.+..++.++|
T Consensus       160 ~~~~~GT~~Y~APEvl~~~~y~~~~D  185 (322)
T d1s9ja_         160 ANSFVGTRSYMSPERLQGTHYSVQSD  185 (322)
T ss_dssp             C---CCSSCCCCHHHHHCSCCCTTHH
T ss_pred             cccccCCccccCchHHcCCCCCcHHH
Confidence            2345799999    667788999887

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=6.3e-30  Score=208.87  Aligned_cols=150  Identities=25%  Similarity=0.354  Sum_probs=125.3

Q ss_pred             CCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC---hhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEE
Q 047066          104 NNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY---QSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVN  179 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~  179 (256)
                      ++|++.+.||+|+||+||+|..+ +++.||+|.+....   ....+.+.+|+.+++.++||||+++++++.+++..++||
T Consensus         6 ~dy~i~~~iG~G~fg~Vy~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~ivm   85 (263)
T d2j4za1           6 EDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDATRVYLIL   85 (263)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             hHeEEEEEEecCCCcEEEEEEECCCCcEEEEEEEchHHccChHHHHHHHHHHHHHHhcCCCCCCeEEEEEEECCEEEEEE
Confidence            57899999999999999999985 68899999875422   233467899999999999999999999999999999999


Q ss_pred             ecCCCCCC----------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceeee
Q 047066          180 EFVKLPTI----------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLST  236 (256)
Q Consensus       180 e~~~~~~l----------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~  236 (256)
                      ||+++|+|          ++.....++.|++             |||||+|||++.++.+||+|||+|+....+.   ..
T Consensus        86 Ey~~~g~L~~~l~~~~~l~e~~~~~i~~qi~~al~~lH~~~ivHrDiKp~Nill~~~~~~kl~DFG~a~~~~~~~---~~  162 (263)
T d2j4za1          86 EYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSR---RT  162 (263)
T ss_dssp             ECCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTSCEEECCCCSCSCCCCCC---CE
T ss_pred             eecCCCcHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHCCeeeeeeccccceecCCCCEeecccceeeecCCCc---cc
Confidence            99998765          5555666666655             6999999999999999999999998765432   23


Q ss_pred             eeeecccc----cccccCCCCCCC
Q 047066          237 MVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       237 ~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      ..+||+.|    .+.+..++.++|
T Consensus       163 ~~~Gt~~Y~APE~~~~~~~~~~~D  186 (263)
T d2j4za1         163 TLCGTLDYLPPEMIEGRMHDEKVD  186 (263)
T ss_dssp             ETTEEGGGCCHHHHTTCCCCTTHH
T ss_pred             ccCCCCcccCHHHHcCCCCCchhh
Confidence            45799999    666677888887

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=5.1e-30  Score=211.76  Aligned_cols=155  Identities=21%  Similarity=0.339  Sum_probs=120.1

Q ss_pred             hcCCCcccceeeeeCceEEEEEEECCC-----cEEEEEEecccC-hhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEE
Q 047066          102 ATNNYAYDRMIGRGGYGTVFLGSLSDN-----KAIAIKKSRIVY-QSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVP  175 (256)
Q Consensus       102 ~~~~~~~~~~lg~G~~g~V~~~~~~~~-----~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~  175 (256)
                      ..+.|+..++||+|+||.||+|.++..     ..||||+++... .....+|.+|+.++++++||||++++|++.+.+..
T Consensus         5 ~~~~~~~~~~iG~G~fG~Vy~~~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~~~g~~~~~~~~   84 (283)
T d1mqba_           5 HPSCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNIIRLEGVISKYKPM   84 (283)
T ss_dssp             CTTTEEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSE
T ss_pred             CHHHeEeeeEEeeCCCeEEEEEEEeCCCCEEEEEEEEEEECcccChHHHHHHHHHHHHHHhcCCCCEeeeeEEEecCCce
Confidence            346788899999999999999986532     479999986543 44556799999999999999999999999999999


Q ss_pred             EEEEecCCC-----------CCCCHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCC
Q 047066          176 LLVNEFVKL-----------PTISWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDE  231 (256)
Q Consensus       176 ~lv~e~~~~-----------~~l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~  231 (256)
                      +++|||+.+           +.+++...+.++.|++             |||||+|||++.++.+||+|||+|+.+....
T Consensus        85 ~~v~e~~~~~~l~~~~~~~~~~~~~~~~~~i~~~i~~gl~~lH~~~iiHrDlKp~NILl~~~~~~Kl~DFGla~~~~~~~  164 (283)
T d1mqba_          85 MIITEYMENGALDKFLREKDGEFSVLQLVGMLRGIAAGMKYLANMNYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDP  164 (283)
T ss_dssp             EEEEECCTTEEHHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTCCEEECCCCC--------
T ss_pred             EEEEEecccCcchhhhhcccccccHHHHHHHHHHHHHhhhhccccccccCccccceEEECCCCeEEEcccchhhcccCCC
Confidence            999999977           4467888888888876             6999999999999999999999999875443


Q ss_pred             cee--eeeeeecccc----cccccCCCCCCC
Q 047066          232 TQL--STMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       232 ~~~--~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      ...  .....||+.|    .+.++.++.|||
T Consensus       165 ~~~~~~~~~~gt~~Y~APE~l~~~~~~~~sD  195 (283)
T d1mqba_         165 EATYTTSGGKIPIRWTAPEAISYRKFTSASD  195 (283)
T ss_dssp             ---------CCCGGGSCHHHHHSCCCCHHHH
T ss_pred             ccceEeccCCCCccccCHHHHccCCCCCccc
Confidence            222  2334689999    677788888876

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=6.3e-30  Score=211.46  Aligned_cols=153  Identities=20%  Similarity=0.315  Sum_probs=123.0

Q ss_pred             CCCcccceeeeeCceEEEEEEEC-CCcEEEEEEeccc---ChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEE
Q 047066          104 NNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIV---YQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVN  179 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~  179 (256)
                      ++|++.+.||+|+||+||+|..+ +++.||||.+...   .....+.+.+|++++++++||||+++++++.+.+..++||
T Consensus         8 ~dy~i~~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~ivm   87 (288)
T d1uu3a_           8 EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFGL   87 (288)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCSTTBCCEEEEEECSSEEEEEE
T ss_pred             CCCEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEehHHccCHHHHHHHHHHHHHHHHcCCCCeeEEEEEEEECCEEEEEE
Confidence            56999999999999999999975 6899999988642   2334567899999999999999999999999999999999


Q ss_pred             ecCCCCCC----------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCc-eee
Q 047066          180 EFVKLPTI----------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDET-QLS  235 (256)
Q Consensus       180 e~~~~~~l----------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~-~~~  235 (256)
                      ||+++|+|          ++.....++.|++             |||||+|||+++++.+||+|||+|+.+..... ...
T Consensus        88 Ey~~gg~L~~~~~~~~~l~e~~~~~~~~qi~~al~ylH~~~iiHrDiKp~NIll~~~~~vkl~DFG~a~~~~~~~~~~~~  167 (288)
T d1uu3a_          88 SYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARA  167 (288)
T ss_dssp             CCCTTEEHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTSCEEECCCTTCEECC--------
T ss_pred             EccCCCCHHHhhhccCCCCHHHHHHHHHHHHHHHHhhccccEEcCcCCccccccCCCceEEecccccceecccCCccccc
Confidence            99998654          5555566666655             79999999999999999999999998764432 233


Q ss_pred             eeeeecccc----cccccCCCCCCC
Q 047066          236 TMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       236 ~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      +..+||+.|    .+.+..++.++|
T Consensus       168 ~~~~GT~~Y~APE~~~~~~~~~~~D  192 (288)
T d1uu3a_         168 NSFVGTAQYVSPELLTEKSACKSSD  192 (288)
T ss_dssp             --CCCCGGGCCHHHHHTCCCCHHHH
T ss_pred             ccccCCccccCceeeccCCCCcccc
Confidence            456799999    566677887776

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.4e-29  Score=213.72  Aligned_cols=153  Identities=23%  Similarity=0.275  Sum_probs=126.9

Q ss_pred             cCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEeccc---ChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEE
Q 047066          103 TNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIV---YQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLV  178 (256)
Q Consensus       103 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv  178 (256)
                      .++|++.+.||+|+||+||+|+.+ +++.||+|.++..   .....+.+.+|+.+|+.++||||+++++++.+.+.+++|
T Consensus         4 l~dy~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~~~~iv   83 (337)
T d1o6la_           4 MNDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLCFV   83 (337)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCCTTBCCEEEEEECSSEEEEE
T ss_pred             hHhcEEEEEEecCcCeEEEEEEECCCCCEEEEEEEchhhccCHHHHHHHHHHHHHHHhCCCCCEEEEEeeeccccccccc
Confidence            357999999999999999999975 7899999998643   233457789999999999999999999999999999999


Q ss_pred             EecCCCCCC----------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceee
Q 047066          179 NEFVKLPTI----------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLS  235 (256)
Q Consensus       179 ~e~~~~~~l----------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~  235 (256)
                      |||+++|+|          ++.....++.|++             |||||+|||+++++.+||+|||+|+....... ..
T Consensus        84 ~ey~~gg~L~~~~~~~~~~~e~~~~~~~~qil~al~ylH~~~iiHRDlKP~NILl~~~g~vkl~DFG~a~~~~~~~~-~~  162 (337)
T d1o6la_          84 MEYANGGELFFHLSRERVFTEERARFYGAEIVSALEYLHSRDVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGA-TM  162 (337)
T ss_dssp             EECCTTCBHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTSCEEECCCTTCBCSCCTTC-CB
T ss_pred             eeccCCCchhhhhhcccCCcHHHHHHHHHHHhhhhhhhhhcCccccccCHHHeEecCCCCEEEeecccccccccCCc-cc
Confidence            999999775          4444455555544             79999999999999999999999997654333 23


Q ss_pred             eeeeecccc----cccccCCCCCCC
Q 047066          236 TMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       236 ~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      ...+||+.|    .+.+..++.++|
T Consensus       163 ~~~~GT~~Y~aPE~~~~~~y~~~~D  187 (337)
T d1o6la_         163 KTFCGTPEYLAPEVLEDNDYGRAVD  187 (337)
T ss_dssp             CCCEECGGGCCGGGGSSSCBCTTHH
T ss_pred             ccceeCHHHhhhhhccCCCCChhhc
Confidence            456799999    666778888887

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=5.3e-30  Score=210.04  Aligned_cols=152  Identities=20%  Similarity=0.323  Sum_probs=113.4

Q ss_pred             CCCcccceeeeeCceEEEEEEEC-CCcEEEEEEeccc--ChhHHHHHHHHHHHHHhCCCCcccceeeEEEE--CCEEEEE
Q 047066          104 NNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIV--YQSQIEQCINKVVVLSQINHRNVVGLLGCCLE--TEVPLLV  178 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~--~~~~~lv  178 (256)
                      ++|++.+.||+|+||+||+|+.+ +|+.||+|.+...  .+...+.+.+|+.++++++||||+++++++.+  .+.+++|
T Consensus         4 edy~~~~~iG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~~~iv   83 (269)
T d2java1           4 EDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYYDRIIDRTNTTLYIV   83 (269)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECCTTSCHHHHHHHHHHHHHTTSCCCTTBCCEEEEEEC----CEEEE
T ss_pred             hhCEEeEEEecCCCeEEEEEEECCCCCEEEEEEEChhhCCHHHHHHHHHHHHHHHHCCCCCEeeEEEEEEeCCCCEEEEE
Confidence            67999999999999999999975 6889999988654  34556789999999999999999999999864  4568999


Q ss_pred             EecCCCCCC--------------CHHHHHHHHH------------------HHHhccCCCcEEEcCCCcEEEEecCCcee
Q 047066          179 NEFVKLPTI--------------SWEVRIRIAA------------------ETAEDIKSINILLDDNYTTKVCDFGASKL  226 (256)
Q Consensus       179 ~e~~~~~~l--------------~~~~~~~~~~------------------~i~rdlk~~NiLi~~~~~~ki~DFGla~~  226 (256)
                      |||+++|+|              ++.....++.                  .+||||||+|||++.++.+||+|||+|+.
T Consensus        84 mEy~~~g~L~~~i~~~~~~~~~l~e~~~~~i~~qi~~al~ylH~~~~~~~~IiHrDiKp~NIll~~~~~vkl~DFG~a~~  163 (269)
T d2java1          84 MEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLARI  163 (269)
T ss_dssp             EECCTTEEHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHCC---------CCGGGEEECTTSCEEECCHHHHHH
T ss_pred             EecCCCCcHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCEEeCcCchhhcCcCCCCcEEEeeccceee
Confidence            999998775              3333333332                  35689999999999999999999999998


Q ss_pred             cCCCCceeeeeeeecccc----cccccCCCCCCC
Q 047066          227 VPIDETQLSTMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       227 ~~~~~~~~~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      +..+.. ..+..+||+.|    .+.+..++.|+|
T Consensus       164 ~~~~~~-~~~~~~gt~~Y~APE~l~~~~~~~~~D  196 (269)
T d2java1         164 LNHDTS-FAKAFVGTPYYMSPEQMNRMSYNEKSD  196 (269)
T ss_dssp             C------------CCCSCCCHHHHTTCCCCHHHH
T ss_pred             cccCCC-ccccCCCCcccCCHHHHcCCCCChHHH
Confidence            754332 23456799999    566778888876

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=5.4e-30  Score=213.12  Aligned_cols=155  Identities=21%  Similarity=0.318  Sum_probs=115.8

Q ss_pred             hcCCCcccceeeeeCceEEEEEEECC-C---cEEEEEEeccc-ChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEE
Q 047066          102 ATNNYAYDRMIGRGGYGTVFLGSLSD-N---KAIAIKKSRIV-YQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPL  176 (256)
Q Consensus       102 ~~~~~~~~~~lg~G~~g~V~~~~~~~-~---~~vavK~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~  176 (256)
                      ..++|++.+.||+|+||+||+|.++. +   ..||||.+... .....+.|.+|+.+|++++||||++++|++..++..+
T Consensus        24 ~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~g~~~~~~~~~  103 (299)
T d1jpaa_          24 DISCVKIEQVIGAGEFGEVCSGHLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIMGQFDHPNVIHLEGVVTKSTPVM  103 (299)
T ss_dssp             CGGGEEEEEEEEECSSSEEEEEEECC---CCEEEEEEECCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSCE
T ss_pred             ChhhcEEeeEEeeCCCeEEEEEEEeCCCCEEEEEEEEEECcccCHHHHHHHHHHHHHHHhCCCCCCccEEEEEeeCCEEE
Confidence            34678889999999999999999752 3   36889987654 3555678999999999999999999999999999999


Q ss_pred             EEEecCCCCC-----------CCHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCc
Q 047066          177 LVNEFVKLPT-----------ISWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDET  232 (256)
Q Consensus       177 lv~e~~~~~~-----------l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~  232 (256)
                      +|||||++|+           +++...+.++.|++             |||||+|||++.++.+||+|||+|+.+.....
T Consensus       104 iv~Ey~~~g~L~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~iiHrDlKp~NILl~~~~~~Kl~DFGla~~~~~~~~  183 (299)
T d1jpaa_         104 IITEFMENGSLDSFLRQNDGQFTVIQLVGMLRGIAAGMKYLADMNYVHRDLAARNILVNSNLVCKVSDFGLSRFLEDDTS  183 (299)
T ss_dssp             EEEECCTTEEHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTCCEEECCC-----------
T ss_pred             EEEEecCCCcceeeeccccCCCCHHHHHHHHHHHHHHHHHHhhCCCccCccccceEEECCCCcEEECCcccceEccCCCC
Confidence            9999998744           57777888888877             69999999999999999999999998754332


Q ss_pred             ee----eeeeeecccc----cccccCCCCCCC
Q 047066          233 QL----STMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       233 ~~----~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      ..    .....||+.|    .+.++.++.++|
T Consensus       184 ~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~sD  215 (299)
T d1jpaa_         184 DPTYTSALGGKIPIRWTAPEAIQYRKFTSASD  215 (299)
T ss_dssp             ------------CGGGSCHHHHHSCCCCHHHH
T ss_pred             cceeeecccccCCccccCHHHHhcCCCCcccc
Confidence            21    1223588889    566778888776

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=6.5e-30  Score=210.06  Aligned_cols=157  Identities=22%  Similarity=0.307  Sum_probs=116.8

Q ss_pred             HHhhcCCCcccceeeeeCceEEEEEEECC----CcEEEEEEecccC-hhHHHHHHHHHHHHHhCCCCcccceeeEEEECC
Q 047066           99 LKIATNNYAYDRMIGRGGYGTVFLGSLSD----NKAIAIKKSRIVY-QSQIEQCINKVVVLSQINHRNVVGLLGCCLETE  173 (256)
Q Consensus        99 ~~~~~~~~~~~~~lg~G~~g~V~~~~~~~----~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~  173 (256)
                      |++++++|++.+.||+|+||.||+|.+..    +..||+|.++... ....+.+.+|+.++++++||||+++++++. .+
T Consensus         2 ~ei~~~~~~l~~~iG~G~fg~Vy~a~~~~~~~~~~~vaik~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~-~~   80 (273)
T d1mp8a_           2 YEIQRERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVIT-EN   80 (273)
T ss_dssp             CBCCGGGEEEEEEEEECSSSEEEEEEECCC--CCEEEEEEECTTTTSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEC-SS
T ss_pred             CCcCHHHeEEEEEEeeCCCcEEEEEEEecCCceeEEEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEe-cC
Confidence            66788899999999999999999998642    3568999886543 445578999999999999999999999986 46


Q ss_pred             EEEEEEecCCCCC-----------CCHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCC
Q 047066          174 VPLLVNEFVKLPT-----------ISWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPI  229 (256)
Q Consensus       174 ~~~lv~e~~~~~~-----------l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~  229 (256)
                      ..++||||+++|+           +++...+.++.|++             |||||+||++++++.+||+|||+|+.+..
T Consensus        81 ~~~iv~E~~~~g~l~~~~~~~~~~l~~~~~~~~~~qi~~gl~ylH~~~iiHrDlKp~NIll~~~~~~Kl~DfG~a~~~~~  160 (273)
T d1mp8a_          81 PVWIIMELCTLGELRSFLQVRKYSLDLASLILYAYQLSTALAYLESKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMED  160 (273)
T ss_dssp             SCEEEEECCTTEEHHHHHHHTTTTSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEEETTEEEECC---------
T ss_pred             eEEEEEEeccCCcHHhhhhccCCCCCHHHHHHHHHHHHHHhhhhcccCeeccccchhheeecCCCcEEEccchhheeccC
Confidence            7899999998744           57777777777776             69999999999999999999999998765


Q ss_pred             CCceeeeeeeecccc----cccccCCCCCCC
Q 047066          230 DETQLSTMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       230 ~~~~~~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      ......+...||+.|    .+.++.++.++|
T Consensus       161 ~~~~~~~~~~gt~~y~apE~l~~~~~~~~~D  191 (273)
T d1mp8a_         161 STYYKASKGKLPIKWMAPESINFRRFTSASD  191 (273)
T ss_dssp             ----------CCGGGCCHHHHHHCCCSHHHH
T ss_pred             CcceeccceecCcccchhhHhccCCCCCccc
Confidence            544445556789999    666778887776

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=6e-30  Score=215.30  Aligned_cols=160  Identities=21%  Similarity=0.380  Sum_probs=128.9

Q ss_pred             HHHHhhcCCCcccceeeeeCceEEEEEEECC-C-----cEEEEEEeccc-ChhHHHHHHHHHHHHHhC-CCCcccceeeE
Q 047066           97 GELKIATNNYAYDRMIGRGGYGTVFLGSLSD-N-----KAIAIKKSRIV-YQSQIEQCINKVVVLSQI-NHRNVVGLLGC  168 (256)
Q Consensus        97 ~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~-~-----~~vavK~~~~~-~~~~~~~~~~E~~~l~~l-~h~niv~l~~~  168 (256)
                      ..|+++.++|++.+.||+|+||+||+|.+.. +     ..||+|.+... .......+.+|+.++.++ +|||||+++++
T Consensus        30 ~kwei~~~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~HpnIv~l~~~  109 (325)
T d1rjba_          30 LKWEFPRENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSHENIVNLLGA  109 (325)
T ss_dssp             GGGBCCGGGEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEE
T ss_pred             ccccCCHHHeEEeeEEeeCCCeEEEEEEEcCCCcccceeEEEEEEeccccCHHHHHHHHHHHHHHHHhcCCCcEeEEEEE
Confidence            3577888999999999999999999998642 2     36899987543 334456789999999998 89999999999


Q ss_pred             EEECCEEEEEEecCCCCCC---------------------------------CHHHHHHHHHHHH-------------hc
Q 047066          169 CLETEVPLLVNEFVKLPTI---------------------------------SWEVRIRIAAETA-------------ED  202 (256)
Q Consensus       169 ~~~~~~~~lv~e~~~~~~l---------------------------------~~~~~~~~~~~i~-------------rd  202 (256)
                      +.+.+..++|||||++|+|                                 ++...+.++.|++             ||
T Consensus       110 ~~~~~~~~lv~Ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~gl~yLH~~~IiHRD  189 (325)
T d1rjba_         110 CTLSGPIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLEFKSCVHRD  189 (325)
T ss_dssp             ECSSSSCEEEEECCTTCBHHHHHHTTTTCC---------------------CCHHHHHHHHHHHHHHHHHHHHTTEEETT
T ss_pred             EeeCCeEEEEEEcCCCCcHHHHHHhccCCCcchhhhhccccccccccccCCCCHHHHHHHHHHHHHHHHHHHhCCeeecc
Confidence            9999999999999998664                                 4555666777766             79


Q ss_pred             cCCCcEEEcCCCcEEEEecCCceecCCCCce-eeeeeeecccc----cccccCCCCCCC
Q 047066          203 IKSINILLDDNYTTKVCDFGASKLVPIDETQ-LSTMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       203 lk~~NiLi~~~~~~ki~DFGla~~~~~~~~~-~~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      |||+|||++.++.+||+|||+|+........ ......||+.|    .+.++.++.++|
T Consensus       190 lKp~Nill~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~~D  248 (325)
T d1rjba_         190 LAARNVLVTHGKVVKICDFGLARDIMSDSNYVVRGNARLPVKWMAPESLFEGIYTIKSD  248 (325)
T ss_dssp             CSGGGEEEETTTEEEECCCGGGSCGGGCTTSEEETTEEECGGGCCHHHHHHCCCCHHHH
T ss_pred             CchhccccccCCeEEEeeccccccccCCCceeeeccccCCCccCChHHHcCCCCCccee
Confidence            9999999999999999999999887554333 33456799999    577788888876

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=2e-29  Score=211.11  Aligned_cols=149  Identities=25%  Similarity=0.356  Sum_probs=124.4

Q ss_pred             CCCcccceeeeeCceEEEEEEEC-CCcEEEEEEeccc---ChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEE
Q 047066          104 NNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIV---YQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVN  179 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~  179 (256)
                      ++|++.+.||+|+||+||+|+.+ +|+.||+|.++..   .....+.+.+|+.+++.++||||+++++++.+.+..++||
T Consensus         4 ~dy~i~~~lG~G~fg~Vy~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~ivm   83 (316)
T d1fota_           4 QDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWGTFQDAQQIFMIM   83 (316)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCBTTBCCEEEEEECSSEEEEEE
T ss_pred             hHeEEEEEEecCcCcEEEEEEECCCCCEEEEEEEchHHccCHHHHHHHHHHHHHHHhccCcChhheeeeEeeCCeeeeEe
Confidence            57899999999999999999975 6899999998642   2334577899999999999999999999999999999999


Q ss_pred             ecCCCCCC----------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceeee
Q 047066          180 EFVKLPTI----------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLST  236 (256)
Q Consensus       180 e~~~~~~l----------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~  236 (256)
                      ||+++|++          +......++.|++             |||||+|||++.++.+||+|||+|+.....    ..
T Consensus        84 E~~~gg~l~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~iiHrDiKp~NILl~~~g~vkL~DFG~a~~~~~~----~~  159 (316)
T d1fota_          84 DYIEGGELFSLLRKSQRFPNPVAKFYAAEVCLALEYLHSKDIIYRDLKPENILLDKNGHIKITDFGFAKYVPDV----TY  159 (316)
T ss_dssp             CCCCSCBHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHHTTTEECCCCCGGGEEECTTSCEEECCCSSCEECSSC----BC
T ss_pred             eecCCccccccccccccccccHHHHHHHHHHHhhhhhccCcEEccccCchheeEcCCCCEEEecCccceEeccc----cc
Confidence            99998764          4444455555554             799999999999999999999999987543    23


Q ss_pred             eeeecccc----cccccCCCCCCC
Q 047066          237 MVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       237 ~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      ..+||+.|    .+.+..++.++|
T Consensus       160 ~~~Gt~~Y~APE~l~~~~y~~~~D  183 (316)
T d1fota_         160 TLCGTPDYIAPEVVSTKPYNKSID  183 (316)
T ss_dssp             CCCSCTTTCCHHHHTTCCBCTTHH
T ss_pred             cccCcccccCHHHHcCCCCCchhh
Confidence            46799999    566777888876

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

Probab=99.96  E-value=4.8e-29  Score=211.47  Aligned_cols=151  Identities=17%  Similarity=0.256  Sum_probs=127.3

Q ss_pred             CCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEecC
Q 047066          104 NNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEFV  182 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~  182 (256)
                      ++|++.+.||+|+||.||+|..+ +|+.||+|.+........+.+.+|+.+|++++||||+++++++.+.+.+++|||||
T Consensus        26 ~~Y~i~~~lG~G~fg~Vy~~~~~~~g~~vAvK~i~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~ivmE~~  105 (350)
T d1koaa2          26 DHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPTLVNLHDAFEDDNEMVMIYEFM  105 (350)
T ss_dssp             GTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECCCSHHHHHHHHHHHHHHHHTCCTTBCCEEEEEEETTEEEEEECCC
T ss_pred             cCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEEcccchhhHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEEcC
Confidence            57999999999999999999975 68999999997766666788999999999999999999999999999999999999


Q ss_pred             CCCCC-----------CHHHHHHHHHHHH-------------hccCCCcEEEc--CCCcEEEEecCCceecCCCCceeee
Q 047066          183 KLPTI-----------SWEVRIRIAAETA-------------EDIKSINILLD--DNYTTKVCDFGASKLVPIDETQLST  236 (256)
Q Consensus       183 ~~~~l-----------~~~~~~~~~~~i~-------------rdlk~~NiLi~--~~~~~ki~DFGla~~~~~~~~~~~~  236 (256)
                      ++|+|           ++.....++.|++             |||||+|||++  .++.+||+|||+|+.+.....  ..
T Consensus       106 ~gg~L~~~l~~~~~~l~e~~~~~i~~qi~~aL~ylH~~~iiHrDiKp~NIll~~~~~~~vkL~DFG~a~~~~~~~~--~~  183 (350)
T d1koaa2         106 SGGELFEKVADEHNKMSEDEAVEYMRQVCKGLCHMHENNYVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDPKQS--VK  183 (350)
T ss_dssp             CSCBHHHHHTCTTSCBCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESSTTSCCEEECCCTTCEECCTTSC--EE
T ss_pred             CCCCHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhcCCeeeeechhHeeeccCCCCeEEEeecchheecccccc--cc
Confidence            88664           5666667777766             79999999995  467899999999998764433  34


Q ss_pred             eeeecccc----cccccCCCCCCC
Q 047066          237 MVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       237 ~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      ...||+.|    .+.+..++.++|
T Consensus       184 ~~~gT~~Y~aPEv~~~~~~~~~~D  207 (350)
T d1koaa2         184 VTTGTAEFAAPEVAEGKPVGYYTD  207 (350)
T ss_dssp             EECSCTTTCCHHHHHTCCBCHHHH
T ss_pred             eecCcccccCHHHHcCCCCChhHh
Confidence            56799999    556666777665

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

Probab=99.96  E-value=5.4e-29  Score=211.32  Aligned_cols=151  Identities=19%  Similarity=0.263  Sum_probs=127.1

Q ss_pred             CCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEecC
Q 047066          104 NNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEFV  182 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~  182 (256)
                      +.|++.+.||+|+||.||+|... +++.||+|.++.........+.+|+.+|++++||||+++++++.+.+.+++|||||
T Consensus        29 d~Y~i~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~ivmE~~  108 (352)
T d1koba_          29 DYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPKLINLHDAFEDKYEMVLILEFL  108 (352)
T ss_dssp             GTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCSTTBCCEEEEEECSSEEEEEEECC
T ss_pred             cceEEEEEEecCCCeEEEEEEECCCCCEEEEEEECCcchhHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEEcC
Confidence            57999999999999999999975 69999999987666556678899999999999999999999999999999999999


Q ss_pred             CCCCC-----------CHHHHHHHHHHHH-------------hccCCCcEEEc--CCCcEEEEecCCceecCCCCceeee
Q 047066          183 KLPTI-----------SWEVRIRIAAETA-------------EDIKSINILLD--DNYTTKVCDFGASKLVPIDETQLST  236 (256)
Q Consensus       183 ~~~~l-----------~~~~~~~~~~~i~-------------rdlk~~NiLi~--~~~~~ki~DFGla~~~~~~~~~~~~  236 (256)
                      ++|+|           ++.....++.|++             |||||+|||++  .++.+||+|||+|+.+..+..  ..
T Consensus       109 ~gg~L~~~~~~~~~~l~e~~~~~i~~qi~~aL~ylH~~~iiHRDiKp~NILl~~~~~~~vkL~DFGla~~~~~~~~--~~  186 (352)
T d1koba_         109 SGGELFDRIAAEDYKMSEAEVINYMRQACEGLKHMHEHSIVHLDIKPENIMCETKKASSVKIIDFGLATKLNPDEI--VK  186 (352)
T ss_dssp             CCCBHHHHTTCTTCCBCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESSTTCCCEEECCCTTCEECCTTSC--EE
T ss_pred             CCChHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCeeecccccccccccccCCCeEEEeecccceecCCCCc--ee
Confidence            98664           5666666676665             79999999997  678999999999998765432  34


Q ss_pred             eeeecccc----cccccCCCCCCC
Q 047066          237 MVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       237 ~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      ...||+.|    .+.+..++.++|
T Consensus       187 ~~~gt~~y~aPE~~~~~~~~~~~D  210 (352)
T d1koba_         187 VTTATAEFAAPEIVDREPVGFYTD  210 (352)
T ss_dssp             EECSSGGGCCHHHHTTCCBCHHHH
T ss_pred             eccCcccccCHHHHcCCCCCCccc
Confidence            45699999    556666777665

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.96  E-value=4.7e-29  Score=208.16  Aligned_cols=148  Identities=23%  Similarity=0.335  Sum_probs=122.9

Q ss_pred             CCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC---hhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEE
Q 047066          104 NNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY---QSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVN  179 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~  179 (256)
                      +.|+..+.||+|+||.||+|... +++.||||.+....   ....+.+.+|+.+|++++||||+++++++.+++..++||
T Consensus        15 ~~y~~l~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~iv~   94 (309)
T d1u5ra_          15 KLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLVM   94 (309)
T ss_dssp             HHEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEECCSSCHHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEE
T ss_pred             HhcEeeEEEecCCCeEEEEEEECCCCcEEEEEEEchhhccCHHHHHHHHHHHHHHHHCCCCCEeeEEEEEEECCEEEEEE
Confidence            45888999999999999999975 68899999886543   334467899999999999999999999999999999999


Q ss_pred             ecCCCC----------CCCHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceeee
Q 047066          180 EFVKLP----------TISWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLST  236 (256)
Q Consensus       180 e~~~~~----------~l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~  236 (256)
                      |||.+|          .+++.....++.|++             |||||+|||++.++.+||+|||+|+.....     .
T Consensus        95 E~~~~g~l~~~~~~~~~l~e~~~~~i~~qi~~aL~yLH~~~iiHrDiKp~NILl~~~~~~Kl~DFG~a~~~~~~-----~  169 (309)
T d1u5ra_          95 EYCLGSASDLLEVHKKPLQEVEIAAVTHGALQGLAYLHSHNMIHRDVKAGNILLSEPGLVKLGDFGSASIMAPA-----N  169 (309)
T ss_dssp             ECCSEEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCSGGGEEEETTTEEEECCCTTCBSSSSB-----C
T ss_pred             EecCCCchHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCEeccCCCcceEEECCCCCEEEeecccccccCCC-----C
Confidence            999874          457777777777766             799999999999999999999999876432     2


Q ss_pred             eeeecccc----cc---cccCCCCCCC
Q 047066          237 MVQGTLGY----YL---HTSQGTLNKE  256 (256)
Q Consensus       237 ~~~Gt~~y----~~---~~~~~t~ksD  256 (256)
                      ..+||+.|    .+   ..+.++.++|
T Consensus       170 ~~~GT~~Y~APE~~~~~~~~~y~~~~D  196 (309)
T d1u5ra_         170 SFVGTPYWMAPEVILAMDEGQYDGKVD  196 (309)
T ss_dssp             CCCSCGGGCCHHHHTTTTSCCBCTHHH
T ss_pred             ccccCccccCHHHHhccCCCCcCchhh
Confidence            34699999    22   2456788776

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2.3e-29  Score=207.85  Aligned_cols=155  Identities=21%  Similarity=0.339  Sum_probs=125.3

Q ss_pred             hhcCCCcccce-eeeeCceEEEEEEEC---CCcEEEEEEeccc-ChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEE
Q 047066          101 IATNNYAYDRM-IGRGGYGTVFLGSLS---DNKAIAIKKSRIV-YQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVP  175 (256)
Q Consensus       101 ~~~~~~~~~~~-lg~G~~g~V~~~~~~---~~~~vavK~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~  175 (256)
                      +.+++|.+.+. ||+|+||.||+|.++   ++..||||.++.. .+...++|.+|+.+|++++||||++++|++.+ +.+
T Consensus         5 l~~~~~~~~~~~iG~G~fg~Vy~~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~g~~~~-~~~   83 (285)
T d1u59a_           5 LKRDNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQA-EAL   83 (285)
T ss_dssp             CCGGGEEEEEEEEECCTTEEEEEEEEC---CCEEEEEEEECSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEES-SSE
T ss_pred             ecccCeEECCcEEecccCeEEEEEEEecCCCcEEEEEEEEChhcCHHHHHHHHHHHHHHHhCCCCCEeeEeeeecc-CeE
Confidence            34567778775 999999999999764   3557999998654 35566889999999999999999999999865 558


Q ss_pred             EEEEecCCCCC-----------CCHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCC
Q 047066          176 LLVNEFVKLPT-----------ISWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDE  231 (256)
Q Consensus       176 ~lv~e~~~~~~-----------l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~  231 (256)
                      ++||||+++|+           +++.....++.|++             |||||+|||++.++.+||+|||+|+.+....
T Consensus        84 ~lvmE~~~~g~L~~~l~~~~~~l~~~~~~~i~~qi~~gL~ylH~~~iiHrDlKp~Nill~~~~~~Kl~DFGla~~~~~~~  163 (285)
T d1u59a_          84 MLVMEMAGGGPLHKFLVGKREEIPVSNVAELLHQVSMGMKYLEEKNFVHRDLAARNVLLVNRHYAKISDFGLSKALGADD  163 (285)
T ss_dssp             EEEEECCTTEEHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEEETTEEEECCCTTCEECTTCS
T ss_pred             EEEEEeCCCCcHHHHhhccccCCCHHHHHHHHHHHHHHHHHHHhCCeecCcCchhheeeccCCceeeccchhhhcccccc
Confidence            99999998854           56777788888877             6999999999999999999999999886544


Q ss_pred             ceee--eeeeecccc----cccccCCCCCCC
Q 047066          232 TQLS--TMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       232 ~~~~--~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      ....  ....||+.|    .+.++.++.|||
T Consensus       164 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~ksD  194 (285)
T d1u59a_         164 SYYTARSAGKWPLKWYAPECINFRKFSSRSD  194 (285)
T ss_dssp             CEECCCCSSCCCGGGCCHHHHHHCEECHHHH
T ss_pred             cccccccccccCccccChHHHhCCCCCccch
Confidence            3322  234688988    566777887776

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=8.1e-29  Score=202.99  Aligned_cols=148  Identities=20%  Similarity=0.269  Sum_probs=118.1

Q ss_pred             CcccceeeeeCceEEEEEEEC-CCcEEEEEEeccc--ChhHHHHHHHHHHHHHhCCCCcccceeeEEEE----CCEEEEE
Q 047066          106 YAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIV--YQSQIEQCINKVVVLSQINHRNVVGLLGCCLE----TEVPLLV  178 (256)
Q Consensus       106 ~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~----~~~~~lv  178 (256)
                      |++.+.||+|+||+||+|..+ ++..||+|.+...  .....+.+.+|+++|++++||||+++++++.+    .+.+++|
T Consensus        11 ~~~~~~iG~G~fg~Vy~~~~~~~~~~va~K~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~~~~~iv   90 (270)
T d1t4ha_          11 LKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVLV   90 (270)
T ss_dssp             EEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEESSSCEEEEEE
T ss_pred             EEeeeEEecCcCcEEEEEEECCCCeEEEEEEEchhhCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEeeccccCCEEEEE
Confidence            466678999999999999975 6889999987643  34556789999999999999999999999875    3568999


Q ss_pred             EecCCCCCC----------CHHHHHHHHHHHH---------------hccCCCcEEEc-CCCcEEEEecCCceecCCCCc
Q 047066          179 NEFVKLPTI----------SWEVRIRIAAETA---------------EDIKSINILLD-DNYTTKVCDFGASKLVPIDET  232 (256)
Q Consensus       179 ~e~~~~~~l----------~~~~~~~~~~~i~---------------rdlk~~NiLi~-~~~~~ki~DFGla~~~~~~~~  232 (256)
                      |||+++|+|          ++.....++.|++               |||||+|||++ +++.+||+|||+|+.....  
T Consensus        91 mE~~~~g~L~~~l~~~~~~~~~~~~~~~~qi~~gl~yLH~~~~~IiHrDiKp~NILl~~~~~~~Kl~DFGla~~~~~~--  168 (270)
T d1t4ha_          91 TELMTSGTLKTYLKRFKVMKIKVLRSWCRQILKGLQFLHTRTPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKRAS--  168 (270)
T ss_dssp             EECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHTSSSCCCCSCCCGGGEEESSTTSCEEECCTTGGGGCCTT--
T ss_pred             EeCCCCCcHHHHHhccccccHHHHHHHHHHHHHHHHHHHHCCCCEEeCCcChhhceeeCCCCCEEEeecCcceeccCC--
Confidence            999999775          4444455555544               79999999996 5789999999999864432  


Q ss_pred             eeeeeeeecccc---cccccCCCCCCC
Q 047066          233 QLSTMVQGTLGY---YLHTSQGTLNKE  256 (256)
Q Consensus       233 ~~~~~~~Gt~~y---~~~~~~~t~ksD  256 (256)
                       .....+||+.|   ++..++++.++|
T Consensus       169 -~~~~~~GT~~Y~aPE~~~~~~~~~~D  194 (270)
T d1t4ha_         169 -FAKAVIGTPEFMAPEMYEEKYDESVD  194 (270)
T ss_dssp             -SBEESCSSCCCCCGGGGGTCCCTHHH
T ss_pred             -ccCCcccCccccCHHHhCCCCCCcCc
Confidence             23456799999   555677888876

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.96  E-value=1.5e-29  Score=210.76  Aligned_cols=161  Identities=22%  Similarity=0.314  Sum_probs=131.1

Q ss_pred             hHHHHhhcCCCcccceeeeeCceEEEEEEEC------CCcEEEEEEecccC-hhHHHHHHHHHHHHHhCCCCcccceeeE
Q 047066           96 AGELKIATNNYAYDRMIGRGGYGTVFLGSLS------DNKAIAIKKSRIVY-QSQIEQCINKVVVLSQINHRNVVGLLGC  168 (256)
Q Consensus        96 ~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~------~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~  168 (256)
                      ..+++.++++|++.+.||+|+||+||+|+.+      +++.||||+++... ....+++.+|+.+++.++||||++++++
T Consensus         5 ~~~~e~p~~~~~~~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~E~~il~~l~h~niv~~~~~   84 (301)
T d1lufa_           5 LLSLEYPRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDNPNIVKLLGV   84 (301)
T ss_dssp             HHHTBCCGGGCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEE
T ss_pred             hhhccCCHHHcEEeEEEeeCCCeEEEEEEECCCccCCCCeEEEEEEEChhcChHHHHHHHHHHHHHHhcCCCCcccceee
Confidence            3467788899999999999999999999863      35789999987544 4445789999999999999999999999


Q ss_pred             EEECCEEEEEEecCCCCCC----------------------------------CHHHHHHHHHHHH-------------h
Q 047066          169 CLETEVPLLVNEFVKLPTI----------------------------------SWEVRIRIAAETA-------------E  201 (256)
Q Consensus       169 ~~~~~~~~lv~e~~~~~~l----------------------------------~~~~~~~~~~~i~-------------r  201 (256)
                      |...+..+++|||+++|+|                                  ++...+.++.|++             |
T Consensus        85 ~~~~~~~~~v~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~gl~ylH~~~ivHr  164 (301)
T d1lufa_          85 CAVGKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSERKFVHR  164 (301)
T ss_dssp             ECSSSSCEEEEECCTTCBHHHHHHHTCC----------------------CCCCHHHHHHHHHHHHHHHHHHHHTTCCCS
T ss_pred             eccCCceEEEEEecCCCcHHHHHHhcCccccccccccccchhhhccccCCCCCCHHHHHHHHHHHHHHhhhcccCCeEee
Confidence            9999999999999988664                                  4455677777766             6


Q ss_pred             ccCCCcEEEcCCCcEEEEecCCceecCCCCce-eeeeeeecccc----cccccCCCCCCC
Q 047066          202 DIKSINILLDDNYTTKVCDFGASKLVPIDETQ-LSTMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       202 dlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~-~~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      ||||+|||+|.++.+||+|||+|+.+...... ..+...||+.|    .+.+..+|+|+|
T Consensus       165 DlKp~NILld~~~~~Kl~DFGls~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~t~ksD  224 (301)
T d1lufa_         165 DLATRNCLVGENMVVKIADFGLSRNIYSADYYKADGNDAIPIRWMPPESIFYNRYTTESD  224 (301)
T ss_dssp             CCSGGGEEECGGGCEEECCCSCHHHHTGGGCBC----CCBCGGGCCHHHHHHCCCCHHHH
T ss_pred             EEcccceEECCCCcEEEccchhheeccCCccccccCCCCcCcCcCCHHHHccCCCChhhh
Confidence            99999999999999999999999876543322 23445688999    667778888876

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.95  E-value=3.4e-29  Score=208.91  Aligned_cols=152  Identities=22%  Similarity=0.289  Sum_probs=109.3

Q ss_pred             cCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC-hhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEe
Q 047066          103 TNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY-QSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNE  180 (256)
Q Consensus       103 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e  180 (256)
                      .+.|++.+.||+|+||+||+|..+ +++.||+|.+.... ......+.+|+.+|+.++||||+++++++.+.+..++|||
T Consensus         8 ~d~Y~~~~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~lvmE   87 (307)
T d1a06a_           8 RDIYDFRDVLGTGAFSEVILAEDKRTQKLVAIKCIAKKALEGKEGSMENEIAVLHKIKHPNIVALDDIYESGGHLYLIMQ   87 (307)
T ss_dssp             GGTEEEEEESBSGGGGGEEEEEETTTCCEEEEEEEEC----------CHHHHHHHTCCCTTBCCEEEEEECSSEEEEEEC
T ss_pred             ccceEEEEEEeeccCeEEEEEEECCCCCEEEEEEEchHHhhhHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEe
Confidence            467999999999999999999975 68899999886543 2334568899999999999999999999999999999999


Q ss_pred             cCCCCCC----------CHHHHHHHHHHHH-------------hccCCCcEEEc---CCCcEEEEecCCceecCCCCcee
Q 047066          181 FVKLPTI----------SWEVRIRIAAETA-------------EDIKSINILLD---DNYTTKVCDFGASKLVPIDETQL  234 (256)
Q Consensus       181 ~~~~~~l----------~~~~~~~~~~~i~-------------rdlk~~NiLi~---~~~~~ki~DFGla~~~~~~~~~~  234 (256)
                      ||++|+|          ++.....++.|++             |||||+|||+.   +++.+||+|||+|+.......  
T Consensus        88 ~~~gg~L~~~l~~~~~l~e~~~~~~~~qi~~al~ylH~~~iiHrDiKp~Nil~~~~~~~~~vkl~DFG~a~~~~~~~~--  165 (307)
T d1a06a_          88 LVSGGELFDRIVEKGFYTERDASRLIFQVLDAVKYLHDLGIVHRDLKPENLLYYSLDEDSKIMISDFGLSKMEDPGSV--  165 (307)
T ss_dssp             CCCSCBHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEESSSSTTCCEEECCC-------------
T ss_pred             ccCCCcHHHhhhcccCCCHHHHHHHHHHHHHHHHhhhhceeeeEEecccceeecccCCCceEEEeccceeEEccCCCe--
Confidence            9998664          5666666666665             79999999994   578999999999987654322  


Q ss_pred             eeeeeecccc----cccccCCCCCCC
Q 047066          235 STMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       235 ~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      ....+||+.|    .+.++.++.++|
T Consensus       166 ~~~~~GT~~y~APE~~~~~~~~~~~D  191 (307)
T d1a06a_         166 LSTACGTPGYVAPEVLAQKPYSKAVD  191 (307)
T ss_dssp             -------CTTSCHHHHTTCCCCTHHH
T ss_pred             eeeeeeCccccCcHHHcCCCCCcHHH
Confidence            3346799999    666777888876

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=3.4e-29  Score=209.12  Aligned_cols=162  Identities=22%  Similarity=0.327  Sum_probs=132.0

Q ss_pred             ChHHHHhhcCCCcccceeeeeCceEEEEEEEC------CCcEEEEEEecccC-hhHHHHHHHHHHHHHhCCCCcccceee
Q 047066           95 TAGELKIATNNYAYDRMIGRGGYGTVFLGSLS------DNKAIAIKKSRIVY-QSQIEQCINKVVVLSQINHRNVVGLLG  167 (256)
Q Consensus        95 ~~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~------~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~  167 (256)
                      -.++|+++.++|++.+.||+|+||.||+|.++      +++.||||+++... ......+.+|+.++++++||||+++++
T Consensus        11 ~~~~~ei~~~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~VAvK~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~~~~   90 (308)
T d1p4oa_          11 VPDEWEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLG   90 (308)
T ss_dssp             CCCTTBCCGGGEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTSCHHHHHHHHHHHHHGGGCCCTTBCCEEE
T ss_pred             CccceeecHHHeEEeeEEeeCCCeEEEEEEECCcccCCCCcEEEEEEECcccChHHHHHHHHHHHHHHHcCCCCEeeeee
Confidence            34568888899999999999999999999863      25789999987543 444567999999999999999999999


Q ss_pred             EEEECCEEEEEEecCCCCCC--------------------CHHHHHHHHHHHH-------------hccCCCcEEEcCCC
Q 047066          168 CCLETEVPLLVNEFVKLPTI--------------------SWEVRIRIAAETA-------------EDIKSINILLDDNY  214 (256)
Q Consensus       168 ~~~~~~~~~lv~e~~~~~~l--------------------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~  214 (256)
                      ++...+..++||||+++|+|                    ++.....++.+++             |||||+|||++.++
T Consensus        91 ~~~~~~~~~lv~e~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ia~gl~~LH~~~ivHrDlk~~NiLld~~~  170 (308)
T d1p4oa_          91 VVSQGQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLNANKFVHRDLAARNCMVAEDF  170 (308)
T ss_dssp             EECSSSSCEEEEECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHHHTTCBCSCCSGGGEEECTTC
T ss_pred             EEecCCceeEEEeecCCCCHHHHHHhcccccccccccCCCCHHHHHHHHHHHHHHHHHHhhCCeeeceEcCCceeecCCc
Confidence            99999999999999999875                    3445566777766             69999999999999


Q ss_pred             cEEEEecCCceecCCCCcee-eeeeeecccc----cccccCCCCCCC
Q 047066          215 TTKVCDFGASKLVPIDETQL-STMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       215 ~~ki~DFGla~~~~~~~~~~-~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      .+||+|||+|+.+....... .....||+.|    .+.++.++.++|
T Consensus       171 ~~Kl~DFGla~~~~~~~~~~~~~~~~~t~~y~aPe~l~~~~~~~~~D  217 (308)
T d1p4oa_         171 TVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSD  217 (308)
T ss_dssp             CEEECCTTCCCGGGGGGCEEGGGSSEECGGGCCHHHHHHCCCCHHHH
T ss_pred             eEEEeecccceeccCCcceeeccceecccccCCHHHHccCCCCcccc
Confidence            99999999999775443322 2334699999    666777777765

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=6.5e-28  Score=199.95  Aligned_cols=151  Identities=21%  Similarity=0.217  Sum_probs=123.9

Q ss_pred             CCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC------hhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEE
Q 047066          104 NNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY------QSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPL  176 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~------~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~  176 (256)
                      ++|++.+.||+|+||+||+|..+ +|+.||+|.+....      ....+.+.+|+.+|++++||||+++++++.+.+..+
T Consensus        10 d~Y~~~~~lG~G~fg~Vy~~~~~~~~~~~AvK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~   89 (293)
T d1jksa_          10 DYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYENKTDVI   89 (293)
T ss_dssp             GTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEE
T ss_pred             cCEEEeEEEecCCCeEEEEEEECCCCCEEEEEEEEhhhcchhhhhHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEE
Confidence            67999999999999999999975 68999999875321      223578999999999999999999999999999999


Q ss_pred             EEEecCCCCCC----------CHHHHHHHHHHHH-------------hccCCCcEEEcCCC----cEEEEecCCceecCC
Q 047066          177 LVNEFVKLPTI----------SWEVRIRIAAETA-------------EDIKSINILLDDNY----TTKVCDFGASKLVPI  229 (256)
Q Consensus       177 lv~e~~~~~~l----------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~----~~ki~DFGla~~~~~  229 (256)
                      +|||||++|+|          ++.....++.|++             |||||+|||++.++    .+||+|||+|+....
T Consensus        90 iv~E~~~gg~L~~~i~~~~~l~~~~~~~~~~qi~~al~yLH~~~ivHrDiKp~Nill~~~~~~~~~vkl~DfG~a~~~~~  169 (293)
T d1jksa_          90 LILELVAGGELFDFLAEKESLTEEEATEFLKQILNGVYYLHSLQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDF  169 (293)
T ss_dssp             EEEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEESCSSSSSCCEEECCCTTCEECTT
T ss_pred             EEEEcCCCccccchhccccccchhHHHHHHHHHHHHHHhhhhcceeecccccceEEEecCCCcccceEecchhhhhhcCC
Confidence            99999998765          4555566666655             69999999998776    599999999998754


Q ss_pred             CCceeeeeeeecccc----cccccCCCCCCC
Q 047066          230 DETQLSTMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       230 ~~~~~~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      ...  .....||+.|    .+.+..++.++|
T Consensus       170 ~~~--~~~~~~t~~y~APE~~~~~~~~~~~D  198 (293)
T d1jksa_         170 GNE--FKNIFGTPEFVAPEIVNYEPLGLEAD  198 (293)
T ss_dssp             SCB--CSCCCCCGGGCCHHHHTTCCBCTHHH
T ss_pred             Ccc--ccccCCCCcccCHHHHcCCCCCCccc
Confidence            332  2345699999    566677888876

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=3.8e-28  Score=202.99  Aligned_cols=161  Identities=22%  Similarity=0.387  Sum_probs=134.7

Q ss_pred             hHHHHhhcCCCcccceeeeeCceEEEEEEEC------CCcEEEEEEecccC-hhHHHHHHHHHHHHHhC-CCCcccceee
Q 047066           96 AGELKIATNNYAYDRMIGRGGYGTVFLGSLS------DNKAIAIKKSRIVY-QSQIEQCINKVVVLSQI-NHRNVVGLLG  167 (256)
Q Consensus        96 ~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~------~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l-~h~niv~l~~  167 (256)
                      ..+|+++.++|++.+.||+|+||.||+|.+.      +++.||||+++... ......+.+|+.+++++ +||||+++++
T Consensus        15 ~~~~~~~~~~~~l~~~iG~G~fg~Vy~a~~~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~E~~~~~~l~~HpnIv~~~g   94 (311)
T d1t46a_          15 DHKWEFPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLG   94 (311)
T ss_dssp             CGGGBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEE
T ss_pred             cccccCCHHHeEEeeEEeecCCeEEEEEEEeccccCCCCeEEEEEEECcccCHHHHHHHHHHHHHHHhccCCCCEEEEEE
Confidence            4468889999999999999999999999852      35689999987644 45556899999999999 7999999999


Q ss_pred             EEEECCEEEEEEecCCCCC----------------------------CCHHHHHHHHHHHH-------------hccCCC
Q 047066          168 CCLETEVPLLVNEFVKLPT----------------------------ISWEVRIRIAAETA-------------EDIKSI  206 (256)
Q Consensus       168 ~~~~~~~~~lv~e~~~~~~----------------------------l~~~~~~~~~~~i~-------------rdlk~~  206 (256)
                      +|.+.+..+++||||++|+                            +++.....++.|++             |||||+
T Consensus        95 ~~~~~~~~~lvmE~~~~g~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~gl~~LH~~~ivHrDLKp~  174 (311)
T d1t46a_          95 ACTIGGPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLASKNCIHRDLAAR  174 (311)
T ss_dssp             EECSSSSCEEEEECCTTEEHHHHHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGG
T ss_pred             EEeeCCEEEEEEEcCCCCCHHHHHHhccccccccccccccccccccCCCHHHHHHHHHHHHHHHHHHHhCCeeecccccc
Confidence            9999999999999998864                            56667777888877             699999


Q ss_pred             cEEEcCCCcEEEEecCCceecCCCCce-eeeeeeecccc----cccccCCCCCCC
Q 047066          207 NILLDDNYTTKVCDFGASKLVPIDETQ-LSTMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       207 NiLi~~~~~~ki~DFGla~~~~~~~~~-~~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      |||++.++.+|++|||+++........ ..+..+||+.|    .+.++.+|.++|
T Consensus       175 NIl~~~~~~~ki~DfG~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~D  229 (311)
T d1t46a_         175 NILLTHGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESD  229 (311)
T ss_dssp             GEEEETTTEEEECCCGGGSCTTSCTTSEECSSSEECGGGCCHHHHHHCCCCHHHH
T ss_pred             cccccccCcccccccchheeccCCCcceEeeecccChHHcCHHHhcCCCCCCccc
Confidence            999999999999999999987654433 33456799999    566777887776

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.95  E-value=7.1e-28  Score=204.28  Aligned_cols=149  Identities=23%  Similarity=0.224  Sum_probs=124.9

Q ss_pred             CCCcccceeeeeCceEEEEEEEC-CCcEEEEEEeccc---ChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEE
Q 047066          104 NNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIV---YQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVN  179 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~  179 (256)
                      ++|++.+.||+|+||+||+|..+ +|+.||+|.+...   .....+.+.+|+.+|+.++||||+++++++.+.+..+++|
T Consensus        41 d~y~i~~~lG~G~fg~Vy~a~~~~~g~~~AvK~i~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~~v~  120 (350)
T d1rdqe_          41 DQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVM  120 (350)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             cCeEEEEEeecCcCcEEEEEEECCCCCEEEEEEEchHHccCHHHHHHHHHHHHHHHHcCCCcEeeccccccccccccccc
Confidence            57999999999999999999975 6899999988542   2234567899999999999999999999999999999999


Q ss_pred             ecCCCCCC----------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceeee
Q 047066          180 EFVKLPTI----------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLST  236 (256)
Q Consensus       180 e~~~~~~l----------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~  236 (256)
                      ||+.+|++          +......++.|++             |||||+|||++.++.+||+|||+|+.+...    ..
T Consensus       121 e~~~~g~l~~~l~~~~~l~e~~~~~i~~qi~~aL~yLH~~~iiHRDIKP~NILl~~~g~ikL~DFG~a~~~~~~----~~  196 (350)
T d1rdqe_         121 EYVAGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGR----TW  196 (350)
T ss_dssp             ECCTTCBHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEECSSC----BC
T ss_pred             ccccccchhhhHhhcCCCCHHHHHHHHHHHHHHHHHHHhCCEecCcCCHHHcccCCCCCEEeeeceeeeecccc----cc
Confidence            99998664          5555666666655             799999999999999999999999987543    23


Q ss_pred             eeeecccc----cccccCCCCCCC
Q 047066          237 MVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       237 ~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      ..+||+.|    .+.+..++.++|
T Consensus       197 ~~~Gt~~Y~APE~~~~~~~~~~~D  220 (350)
T d1rdqe_         197 TLCGTPEALAPEIILSKGYNKAVD  220 (350)
T ss_dssp             CCEECGGGCCHHHHTTCCBCTHHH
T ss_pred             cccCccccCCHHHHcCCCCCcccc
Confidence            45799999    566777888776

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=6.8e-28  Score=198.23  Aligned_cols=146  Identities=23%  Similarity=0.329  Sum_probs=115.9

Q ss_pred             ceeeeeCceEEEEEEEC---CCcEEEEEEeccc--ChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEecCCC
Q 047066          110 RMIGRGGYGTVFLGSLS---DNKAIAIKKSRIV--YQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEFVKL  184 (256)
Q Consensus       110 ~~lg~G~~g~V~~~~~~---~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~~  184 (256)
                      +.||+|+||+||+|.++   .++.||||.++..  ++...+.+.+|+.+|++++||||++++|+|.. +..++||||+++
T Consensus        13 k~iG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~g~~~~-~~~~lvmE~~~~   91 (277)
T d1xbba_          13 KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICEA-ESWMLVMEMAEL   91 (277)
T ss_dssp             EEEEECSSEEEEEEEEECSSSEEEEEEEEEC-----CHHHHHHHHHHHHHHTCCCTTBCCEEEEEES-SSEEEEEECCTT
T ss_pred             CCcccCCCeEEEEEEEccCCcCeEEEEEEEChhhCCHHHHHHHHHHHHHHHhCCCCCCceEEEEecc-CCEEEEEEcCCC
Confidence            47999999999999864   3468999988643  34455789999999999999999999999965 457899999998


Q ss_pred             CC----------CCHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceee--eeee
Q 047066          185 PT----------ISWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLS--TMVQ  239 (256)
Q Consensus       185 ~~----------l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~--~~~~  239 (256)
                      |+          +++...+.++.|++             |||||+|||++.++.+||+|||+|+.+........  ....
T Consensus        92 g~L~~~l~~~~~l~~~~~~~i~~qi~~gl~ylH~~~iiHrDlKp~Nill~~~~~~kl~DFGla~~~~~~~~~~~~~~~~~  171 (277)
T d1xbba_          92 GPLNKYLQQNRHVKDKNIIELVHQVSMGMKYLEESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQTHGK  171 (277)
T ss_dssp             EEHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEEETTEEEECCCTTCEECCTTCSEEEC----C
T ss_pred             CcHHHHHhhccCCCHHHHHHHHHHHHHHHhhHHhCCcccCCCcchhhcccccCcccccchhhhhhccccccccccccccC
Confidence            65          46777788888877             69999999999999999999999998765444332  3356


Q ss_pred             ecccc----cccccCCCCCCC
Q 047066          240 GTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       240 Gt~~y----~~~~~~~t~ksD  256 (256)
                      ||+.|    .+.++.+|.|||
T Consensus       172 gt~~y~APE~l~~~~~~~~sD  192 (277)
T d1xbba_         172 WPVKWYAPECINYYKFSSKSD  192 (277)
T ss_dssp             CCGGGCCHHHHHHCEEEHHHH
T ss_pred             CCceecCchhhcCCCCCchhh
Confidence            99999    566777777776

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=2.9e-28  Score=202.62  Aligned_cols=163  Identities=23%  Similarity=0.395  Sum_probs=122.9

Q ss_pred             cChHHHHhhcCCCcccceeeeeCceEEEEEEEC------CCcEEEEEEecccC-hhHHHHHHHHHHHHHhC-CCCcccce
Q 047066           94 FTAGELKIATNNYAYDRMIGRGGYGTVFLGSLS------DNKAIAIKKSRIVY-QSQIEQCINKVVVLSQI-NHRNVVGL  165 (256)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~------~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l-~h~niv~l  165 (256)
                      +..++|+++.++|++.+.||+|+||+||+|.+.      +++.||+|+++... ....+.+.+|...+.++ +|+||+.+
T Consensus         3 ~~~~~wei~~~~y~~~~~iG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~e~~~l~~~~~h~~iv~~   82 (299)
T d1ywna1           3 YDASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNL   82 (299)
T ss_dssp             CCHHHHBCCGGGEEEEEEEEECSSCEEEEEEEESTTSSSCEEEEEEEEC----CHHHHHHHHHHHHHHHHHCCCTTBCCE
T ss_pred             CCCccccccHHHEEEeeEEeecCCeEEEEEEEcCCCcccCCeEEEEEEEccccCcHHHHHHHHHHHHHHhhcCCCeEEEe
Confidence            456789999999999999999999999999853      24689999986543 44557788898888887 78999999


Q ss_pred             eeEEEEC-CEEEEEEecCCCCCC--------------------------CHHHHHHHHHHHH-------------hccCC
Q 047066          166 LGCCLET-EVPLLVNEFVKLPTI--------------------------SWEVRIRIAAETA-------------EDIKS  205 (256)
Q Consensus       166 ~~~~~~~-~~~~lv~e~~~~~~l--------------------------~~~~~~~~~~~i~-------------rdlk~  205 (256)
                      ++++... +..+++||||++|+|                          ++...+.++.|++             |||||
T Consensus        83 ~~~~~~~~~~~~iv~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~gl~ylH~~~ivHrDlKp  162 (299)
T d1ywna1          83 LGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRKCIHRDLAA  162 (299)
T ss_dssp             EEEECSTTSCCEEEEECCTTCBHHHHHHHTGGGBCC-----------CBCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCG
T ss_pred             eeeeccCCCeEEEEEEecCCCcHHHHHHhccccccccccchhhhhcccCCHHHHHHHHHHHHHHHHHHHhCCCcCCcCCc
Confidence            9998764 468999999998765                          3455666677765             69999


Q ss_pred             CcEEEcCCCcEEEEecCCceecCCCCce-eeeeeeecccc----cccccCCCCCCC
Q 047066          206 INILLDDNYTTKVCDFGASKLVPIDETQ-LSTMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       206 ~NiLi~~~~~~ki~DFGla~~~~~~~~~-~~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      +|||+++++.+||+|||+|+........ ..+...||+.|    .+.++.+|.++|
T Consensus       163 ~NILl~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~sD  218 (299)
T d1ywna1         163 RNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSD  218 (299)
T ss_dssp             GGEEECGGGCEEECC------CCSCTTSCCTTSCCCGGGGCCHHHHHHCCCCHHHH
T ss_pred             cceeECCCCcEEEccCcchhhccccccccccCceeeCccccchhHhhcCCCCcccc
Confidence            9999999999999999999876544332 23446799999    567778888776

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1e-27  Score=201.04  Aligned_cols=152  Identities=25%  Similarity=0.357  Sum_probs=124.3

Q ss_pred             CCCcccceeeeeCceEEEEEEEC-CCcEEEEEEeccc---ChhHHHHHHHHHHHHH-hCCCCcccceeeEEEECCEEEEE
Q 047066          104 NNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIV---YQSQIEQCINKVVVLS-QINHRNVVGLLGCCLETEVPLLV  178 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~---~~~~~~~~~~E~~~l~-~l~h~niv~l~~~~~~~~~~~lv  178 (256)
                      ++|++.+.||+|+||+||+|..+ +++.||||.++..   .....+.+..|..++. .++||||+++++++.+++..++|
T Consensus         2 ddy~i~~~iG~G~fg~Vy~~~~~~t~~~vAvK~i~k~~~~~~~~~~~~~~e~~~l~~~~~hp~Iv~~~~~~~~~~~~yiv   81 (320)
T d1xjda_           2 EDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQTKENLFFV   81 (320)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTTBCCEEEEEECSSEEEEE
T ss_pred             CCeEEeeEEecCCCcEEEEEEECCCCCEEEEEEEchhhccChHHHHHHHHHHHHHHHhCCCCcEEEEEEEEccCCceeEE
Confidence            57999999999999999999975 6899999998642   2334566778877765 68999999999999999999999


Q ss_pred             EecCCCCCC----------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceee
Q 047066          179 NEFVKLPTI----------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLS  235 (256)
Q Consensus       179 ~e~~~~~~l----------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~  235 (256)
                      |||+++|+|          +......++.|++             |||||+|||+++++.+||+|||+|+........ .
T Consensus        82 mEy~~~g~L~~~i~~~~~~~e~~~~~~~~qi~~al~ylH~~~iiHrDikp~NiL~~~~~~~kl~DFG~a~~~~~~~~~-~  160 (320)
T d1xjda_          82 MEYLNGGDLMYHIQSCHKFDLSRATFYAAEIILGLQFLHSKGIVYRDLKLDNILLDKDGHIKIADFGMCKENMLGDAK-T  160 (320)
T ss_dssp             EECCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTSCEEECCCTTCBCCCCTTCC-B
T ss_pred             EeecCCCcHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhCCeeeccCcccceeecCCCceeccccchhhhccccccc-c
Confidence            999999775          4555556666655             799999999999999999999999876543332 3


Q ss_pred             eeeeecccc----cccccCCCCCCC
Q 047066          236 TMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       236 ~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      +..+||+.|    .+.++.++.++|
T Consensus       161 ~~~~gt~~y~aPE~~~~~~~~~~~D  185 (320)
T d1xjda_         161 NTFCGTPDYIAPEILLGQKYNHSVD  185 (320)
T ss_dssp             CCCCSCGGGCCHHHHTTCCBCTHHH
T ss_pred             cccCCCCCcCCHHHHcCCCCCchhh
Confidence            445799999    677888888877

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.95  E-value=3e-27  Score=194.29  Aligned_cols=139  Identities=28%  Similarity=0.324  Sum_probs=116.8

Q ss_pred             CCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC---------hhHHHHHHHHHHHHHhCC-CCcccceeeEEEEC
Q 047066          104 NNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY---------QSQIEQCINKVVVLSQIN-HRNVVGLLGCCLET  172 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---------~~~~~~~~~E~~~l~~l~-h~niv~l~~~~~~~  172 (256)
                      ++|++.+.||+|+||+||+|+.. +++.+|+|+++...         +...+.+.+|+.++++++ ||||+++++++.++
T Consensus         3 ~~y~~~~~iG~G~~g~V~~~~~~~~~~~~AvK~i~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~~   82 (277)
T d1phka_           3 ENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTYETN   82 (277)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEECS
T ss_pred             ccCEEceEEecCcCeEEEEEEECCCCCEEEEEEEecccccchhHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEeecccC
Confidence            68999999999999999999975 78999999875432         112356889999999996 99999999999999


Q ss_pred             CEEEEEEecCCCCCC----------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCC
Q 047066          173 EVPLLVNEFVKLPTI----------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPI  229 (256)
Q Consensus       173 ~~~~lv~e~~~~~~l----------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~  229 (256)
                      +..++||||+++|+|          ++.....++.|++             |||||+|||++.++.+||+|||+|+.+..
T Consensus        83 ~~~~ivmE~~~~g~L~~~l~~~~~l~e~~~~~~~~qi~~al~~lH~~~ivHrDlkp~Nill~~~~~~kl~DFG~a~~~~~  162 (277)
T d1phka_          83 TFFFLVFDLMKKGELFDYLTEKVTLSEKETRKIMRALLEVICALHKLNIVHRDLKPENILLDDDMNIKLTDFGFSCQLDP  162 (277)
T ss_dssp             SEEEEEEECCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECCCTTCEECCT
T ss_pred             cceEEEEEcCCCchHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHcCCcccccccceEEEcCCCCeEEccchheeEccC
Confidence            999999999998664          6666677777766             69999999999999999999999998765


Q ss_pred             CCceeeeeeeecccc
Q 047066          230 DETQLSTMVQGTLGY  244 (256)
Q Consensus       230 ~~~~~~~~~~Gt~~y  244 (256)
                      ...  .+..+||+.|
T Consensus       163 ~~~--~~~~~gt~~y  175 (277)
T d1phka_         163 GEK--LREVCGTPSY  175 (277)
T ss_dssp             TCC--BCCCCSCGGG
T ss_pred             CCc--eeeeeccCCC
Confidence            332  2345699999

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=2.3e-27  Score=198.92  Aligned_cols=151  Identities=17%  Similarity=0.231  Sum_probs=123.0

Q ss_pred             cCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEec
Q 047066          103 TNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEF  181 (256)
Q Consensus       103 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~  181 (256)
                      .++|++.+.||+|+||+||+|..+ +++.||+|.++.... ....+.+|+.+|+.++||||+++++++.+.+.+++||||
T Consensus         4 ~~rY~i~~~lG~G~fg~Vy~~~~~~~~~~~AiK~i~~~~~-~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~lvmE~   82 (321)
T d1tkia_           4 YEKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVKGT-DQVLVKKEISILNIARHRNILHLHESFESMEELVMIFEF   82 (321)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCTH-HHHHHHHHHHHHHHSCCTTBCCEEEEEEETTEEEEEECC
T ss_pred             ccceEEEEEEecCCCeEEEEEEECCCCcEEEEEEEcCCcc-cHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEec
Confidence            467999999999999999999976 688999999876543 335688999999999999999999999999999999999


Q ss_pred             CCCCC-----------CCHHHHHHHHHHHH-------------hccCCCcEEEcCC--CcEEEEecCCceecCCCCceee
Q 047066          182 VKLPT-----------ISWEVRIRIAAETA-------------EDIKSINILLDDN--YTTKVCDFGASKLVPIDETQLS  235 (256)
Q Consensus       182 ~~~~~-----------l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~--~~~ki~DFGla~~~~~~~~~~~  235 (256)
                      |++++           +++.....++.|++             |||||+|||++.+  ..+||+|||+++.......  .
T Consensus        83 ~~gg~L~~~i~~~~~~l~e~~~~~i~~qi~~al~yLH~~~iiHrDlKp~NIll~~~~~~~ikl~DFG~~~~~~~~~~--~  160 (321)
T d1tkia_          83 ISGLDIFERINTSAFELNEREIVSYVHQVCEALQFLHSHNIGHFDIRPENIIYQTRRSSTIKIIEFGQARQLKPGDN--F  160 (321)
T ss_dssp             CCCCBHHHHHTSSSCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESSSSCCCEEECCCTTCEECCTTCE--E
T ss_pred             CCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccceeecCCCceEEEEcccchhhccccCCc--c
Confidence            98754           46666667777666             6999999999854  5899999999998754332  3


Q ss_pred             eeeeecccc----cccccCCCCCCC
Q 047066          236 TMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       236 ~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      ....||+.|    ...+..++.++|
T Consensus       161 ~~~~~t~~y~ape~~~~~~~~~~~D  185 (321)
T d1tkia_         161 RLLFTAPEYYAPEVHQHDVVSTATD  185 (321)
T ss_dssp             EEEESCGGGSCHHHHTTCEECHHHH
T ss_pred             cccccccccccchhccCCCCCchhh
Confidence            445699998    555556666655

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.1e-27  Score=199.09  Aligned_cols=152  Identities=24%  Similarity=0.327  Sum_probs=122.3

Q ss_pred             CCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC--hhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEe
Q 047066          104 NNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY--QSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNE  180 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e  180 (256)
                      ++|++.+.||+|+||+||+|... +++.||+|.++...  +...+++.+|+.++++++||||+++++++.+++..++|||
T Consensus         2 d~Y~~~~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~Ei~il~~l~Hp~Iv~~~~~~~~~~~~~iv~e   81 (298)
T d1gz8a_           2 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFE   81 (298)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEC-------CCHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             CCCEeccEEecCcCeEEEEEEECCCCCEEEEEEEehhhcChHHHHHHHHHHHHHHhCCCCcEEEeccccccccceeEEEe
Confidence            57999999999999999999974 68999999986433  2334678999999999999999999999999999999999


Q ss_pred             cCCC-----------CCCCHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceeee
Q 047066          181 FVKL-----------PTISWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLST  236 (256)
Q Consensus       181 ~~~~-----------~~l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~  236 (256)
                      |+.+           +.+++.....++.|++             |||||+|||++.++.+||+|||+|+....+... ..
T Consensus        82 ~~~~~~~~~~~~~~~~~l~e~~~~~~~~qil~~L~yLH~~~IiHrDiKpeNIl~~~~~~~kl~DFG~a~~~~~~~~~-~~  160 (298)
T d1gz8a_          82 FLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRT-YT  160 (298)
T ss_dssp             CCSEEHHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTSCEEECSTTHHHHHCCCSBC-TT
T ss_pred             ecCCchhhhhhhhcccCCCHHHHHHHHHHHHHHHHHhhcCCEEccccCchheeecccCcceeccCCcceeccCCccc-ce
Confidence            9965           4478888888887766             699999999999999999999999887544332 33


Q ss_pred             eeeecccc-----cccccCCCCCCC
Q 047066          237 MVQGTLGY-----YLHTSQGTLNKE  256 (256)
Q Consensus       237 ~~~Gt~~y-----~~~~~~~t~ksD  256 (256)
                      ...||+.|     ......++.++|
T Consensus       161 ~~~gt~~y~apE~~~~~~~~~~~~D  185 (298)
T d1gz8a_         161 HEVVTLWYRAPEILLGCKYYSTAVD  185 (298)
T ss_dssp             CCBCCCTTCCHHHHTTCSSCCTHHH
T ss_pred             eecccceeeehhhhccccCCCcccc
Confidence            34699999     233333466655

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=2.1e-28  Score=199.63  Aligned_cols=151  Identities=20%  Similarity=0.369  Sum_probs=118.0

Q ss_pred             HHhhcCCCcccceeeeeCceEEEEEEECCCcEEEEEEecccChhHHHHHHHHHHHHHhCCCCcccceeeEEEE-CCEEEE
Q 047066           99 LKIATNNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLE-TEVPLL  177 (256)
Q Consensus        99 ~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~-~~~~~l  177 (256)
                      |++..++|++.+.||+|+||.||+|.+ .|..||||+++..  ...+++.+|++++++++||||++++|+|.+ .+..++
T Consensus         2 w~i~~~~~~~~~~lG~G~fg~Vy~~~~-~~~~vAvK~i~~~--~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~~~~l   78 (262)
T d1byga_           2 WALNMKELKLLQTIGKGEFGDVMLGDY-RGNKVAVKCIKND--ATAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYI   78 (262)
T ss_dssp             CBCCGGGEEEEEEEEECSSCEEEEEEE-TTEEEEEEECCCC--C--HHHHHTHHHHTTCCCTTBCCEEEEECCC--CCEE
T ss_pred             CccCHHHeEEeEEEecCCCeEEEEEEE-CCeEEEEEEECcH--HHHHHHHHHHHHHHhCCCCCEeeEEEEEEecCCcEEE
Confidence            566778899999999999999999998 5778999998653  344779999999999999999999999965 456899


Q ss_pred             EEecCCCCCC------------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCc
Q 047066          178 VNEFVKLPTI------------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDET  232 (256)
Q Consensus       178 v~e~~~~~~l------------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~  232 (256)
                      ||||+++|+|            ++...+.++.|++             |||||+|||++.++.+||+|||+++.....  
T Consensus        79 v~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~al~ylH~~~ivH~dlkp~Nil~~~~~~~kl~dfg~s~~~~~~--  156 (262)
T d1byga_          79 VTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGNNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASST--  156 (262)
T ss_dssp             EECCCTTEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECTTSCEEECCCCC---------
T ss_pred             EEeccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHhhccccccCceeccccchHhheecCCCCEeecccccceecCCC--
Confidence            9999999764            5666677787777             599999999999999999999999976433  


Q ss_pred             eeeeeeeecccc----cccccCCCCCCC
Q 047066          233 QLSTMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       233 ~~~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                        .....||+.|    ++.++.+|++||
T Consensus       157 --~~~~~~~~~y~aPE~l~~~~~t~~sD  182 (262)
T d1byga_         157 --QDTGKLPVKWTAPEALREKKFSTKSD  182 (262)
T ss_dssp             -------CCTTTSCHHHHHHCCCCHHHH
T ss_pred             --CccccccccCCChHHHhCCCCChHHH
Confidence              2234588888    667788888877

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.6e-27  Score=199.10  Aligned_cols=148  Identities=28%  Similarity=0.450  Sum_probs=120.2

Q ss_pred             cceeeeeCceEEEEEEECC----CcEEEEEEecc-cChhHHHHHHHHHHHHHhCCCCcccceeeEEEE-CCEEEEEEecC
Q 047066          109 DRMIGRGGYGTVFLGSLSD----NKAIAIKKSRI-VYQSQIEQCINKVVVLSQINHRNVVGLLGCCLE-TEVPLLVNEFV  182 (256)
Q Consensus       109 ~~~lg~G~~g~V~~~~~~~----~~~vavK~~~~-~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~-~~~~~lv~e~~  182 (256)
                      .++||+|+||+||+|.+.+    ...||||.++. ......++|.+|+++|++++||||++++|++.. ++..++|||||
T Consensus        32 ~~~iG~G~fg~Vyk~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~~~~lv~E~~  111 (311)
T d1r0pa_          32 NEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYM  111 (311)
T ss_dssp             EEEEEEETTEEEEEEEECC----CEEEEEEEECCCCCHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEETTTEEEEEEECC
T ss_pred             ceEEeecCCeEEEEEEEECCCCEEEEEEEEEECcccCHHHHHHHHHHHHHHHhCCCCCEeEEeEEEEecCCceEEEEEEe
Confidence            5789999999999999643    23689998864 345666889999999999999999999999886 56899999999


Q ss_pred             CCCCC-----------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCce---ee
Q 047066          183 KLPTI-----------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQ---LS  235 (256)
Q Consensus       183 ~~~~l-----------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~---~~  235 (256)
                      +++++           ++..++.++.|++             |||||+|||+++++.+||+|||+++.+......   ..
T Consensus       112 ~~g~l~~~~~~~~~~~~~~~~~~i~~qia~gL~~lH~~~iiHrDLK~~NILl~~~~~~kL~DFG~~~~~~~~~~~~~~~~  191 (311)
T d1r0pa_         112 KHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKFLASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNK  191 (311)
T ss_dssp             TTCBHHHHHHCTTCCCBHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECTTCCEEECSSGGGCCTTTTTCCCTTCT
T ss_pred             ecCchhhhhccccccchHHHHHHHHHHHHHhhhhhcccCcccCCccHHhEeECCCCCEEEecccchhhccccccccceec
Confidence            98765           4566677777777             599999999999999999999999987543222   12


Q ss_pred             eeeeecccc----cccccCCCCCCC
Q 047066          236 TMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       236 ~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      ....||+.|    .+.++.+|.|+|
T Consensus       192 ~~~~gt~~y~aPE~~~~~~~~~ksD  216 (311)
T d1r0pa_         192 TGAKLPVKWMALESLQTQKFTTKSD  216 (311)
T ss_dssp             TCSSCCGGGSCHHHHHHCCCCHHHH
T ss_pred             ccccccccccChHHHhcCCCCChhH
Confidence            234689999    667788888876

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

Probab=99.94  E-value=2e-27  Score=196.28  Aligned_cols=152  Identities=22%  Similarity=0.292  Sum_probs=122.6

Q ss_pred             CCCcccceeeeeCceEEEEEEECCCcEEEEEEecccC--hhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEec
Q 047066          104 NNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVY--QSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEF  181 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~  181 (256)
                      ++|++.+.||+|+||+||+|..++++.||||++....  ....+++.+|+.+|++++||||+++++++...+..++++|+
T Consensus         2 ~~Y~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~i~~e~   81 (286)
T d1ob3a_           2 EKYHGLEKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVIHTKKRLVLVFEH   81 (286)
T ss_dssp             CSEEEEEEEEEETTEEEEEEEETTSCEEEEEEECCSSGGGCCCHHHHHHHHGGGGCCCTTBCCEEEEEECSSCEEEEEEC
T ss_pred             CCceeccEEecCCCcEEEEEEeCCCCEEEEEEEehhhcChHHHHHHHHHHHHHHhCCCCcEEeeeeecccCCceeEEEEe
Confidence            5799999999999999999999889999999986543  23347899999999999999999999999999999999999


Q ss_pred             CCC----------CCCCHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceeeeee
Q 047066          182 VKL----------PTISWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMV  238 (256)
Q Consensus       182 ~~~----------~~l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~~~  238 (256)
                      +.+          +.++......++.|++             |||||+|||++.++.+|++|||+|.....+... ....
T Consensus        82 ~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~~L~~LH~~~IvHrDiKp~NIll~~~~~~kl~DfG~a~~~~~~~~~-~~~~  160 (286)
T d1ob3a_          82 LDQDLKKLLDVCEGGLESVTAKSFLLQLLNGIAYCHDRRVLHRDLKPQNLLINREGELKIADFGLARAFGIPVRK-YTHE  160 (286)
T ss_dssp             CSEEHHHHHHTSTTCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTSCEEECCTTHHHHHCC---------
T ss_pred             ehhhhHHHHHhhcCCcchhhhHHHHHHHHHHHHHhccCcEEecCCCCceeeEcCCCCEEecccccceecccCccc-ccee
Confidence            865          5578888888887776             699999999999999999999999887544332 2334


Q ss_pred             eecccc-----cccccCCCCCCC
Q 047066          239 QGTLGY-----YLHTSQGTLNKE  256 (256)
Q Consensus       239 ~Gt~~y-----~~~~~~~t~ksD  256 (256)
                      .||+.|     ......+|.++|
T Consensus       161 ~~~~~y~~pE~~~~~~~~~~~~D  183 (286)
T d1ob3a_         161 IVTLWYRAPDVLMGSKKYSTTID  183 (286)
T ss_dssp             -CCCTTCCHHHHTTCCSCCTHHH
T ss_pred             cccchhhhHHHHhCCCCCCccee
Confidence            588888     233445677766

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.94  E-value=4e-27  Score=200.65  Aligned_cols=151  Identities=22%  Similarity=0.257  Sum_probs=118.0

Q ss_pred             cCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC---hhHHHHHHH---HHHHHHhCCCCcccceeeEEEECCEE
Q 047066          103 TNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY---QSQIEQCIN---KVVVLSQINHRNVVGLLGCCLETEVP  175 (256)
Q Consensus       103 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~---E~~~l~~l~h~niv~l~~~~~~~~~~  175 (256)
                      .++|++.+.||+|+||.||+|... +|+.||+|.+....   ......+.+   |+.+++.++||||+++++++.+.+..
T Consensus         3 lddy~i~~~lG~G~fg~Vy~~~~~~t~~~vAiK~i~~~~~~~~~~~~~~~~e~~~~~~l~~~~hpnIv~l~~~~~~~~~~   82 (364)
T d1omwa3           3 MNDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKL   82 (364)
T ss_dssp             STTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEECSSEE
T ss_pred             HHhCeeeeEEecCCCeEEEEEEECCCCCEEEEEEEchHHcchhhHHHHHHHHHHHHHHHhcCCCCcEEEEEEEEEECCEE
Confidence            367999999999999999999975 68999999875321   111223344   46677788899999999999999999


Q ss_pred             EEEEecCCCCCC----------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCc
Q 047066          176 LLVNEFVKLPTI----------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDET  232 (256)
Q Consensus       176 ~lv~e~~~~~~l----------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~  232 (256)
                      ++||||+++|+|          ++.....++.|++             |||||+|||++.++.+||+|||+|+.+.... 
T Consensus        83 ~ivmE~~~gg~L~~~l~~~~~~~e~~~~~~~~qi~~aL~ylH~~~iiHrDlKP~NILl~~~g~iKl~DFGla~~~~~~~-  161 (364)
T d1omwa3          83 SFILDLMNGGDLHYHLSQHGVFSEADMRFYAAEIILGLEHMHNRFVVYRDLKPANILLDEHGHVRISDLGLACDFSKKK-  161 (364)
T ss_dssp             EEEECCCCSCBHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECSSSCEEECCCTTCEECSSSC-
T ss_pred             EEEEEecCCCcHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHCCccceeeccceeEEcCCCcEEEeeeceeeecCCCc-
Confidence            999999999776          3444455555555             7999999999999999999999999876443 


Q ss_pred             eeeeeeeecccc----ccc-ccCCCCCCC
Q 047066          233 QLSTMVQGTLGY----YLH-TSQGTLNKE  256 (256)
Q Consensus       233 ~~~~~~~Gt~~y----~~~-~~~~t~ksD  256 (256)
                        ....+||+.|    .+. +..++.++|
T Consensus       162 --~~~~~GT~~y~APE~~~~~~~~~~~~D  188 (364)
T d1omwa3         162 --PHASVGTHGYMAPEVLQKGVAYDSSAD  188 (364)
T ss_dssp             --CCSCCSCGGGCCHHHHSTTCCCCTHHH
T ss_pred             --ccccccccccchhHHhhcCCCCCcccc
Confidence              2345699999    444 345788776

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.1e-27  Score=199.09  Aligned_cols=148  Identities=24%  Similarity=0.285  Sum_probs=114.2

Q ss_pred             ccceeeeeCceEEEEEEEC-CCcEEEEEEecccChh-----HHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEec
Q 047066          108 YDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVYQS-----QIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNEF  181 (256)
Q Consensus       108 ~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~-----~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~  181 (256)
                      .+++||+|+||+||+|..+ +++.||||+++.....     ..+.+.+|+.++++++||||+++++++...+..++||||
T Consensus         2 ~l~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~~~~~~~~~~~~~ivmE~   81 (299)
T d1ua2a_           2 KLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGHKSNISLVFDF   81 (299)
T ss_dssp             EEEEEEEETTEEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEEEEECCTTCCEEEEEC
T ss_pred             cceEeccCcCeEEEEEEECCCCcEEEEEEEehhhhhhhhHHHHHHHHHHHHHHHhCCCCCEeEEEeeeccCCceeehhhh
Confidence            3578999999999999975 6899999988643321     124688999999999999999999999999999999999


Q ss_pred             CCC----------CCCCHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceeeeee
Q 047066          182 VKL----------PTISWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTMV  238 (256)
Q Consensus       182 ~~~----------~~l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~~~  238 (256)
                      +.+          +.+++.....++.|++             |||||+|||++.++.+||+|||+|+....+... ....
T Consensus        82 ~~~~~~~~~~~~~~~l~~~~~~~~~~qil~aL~~lH~~~iiHrDiKp~NIli~~~~~~KL~DFG~a~~~~~~~~~-~~~~  160 (299)
T d1ua2a_          82 METDLEVIIKDNSLVLTPSHIKAYMLMTLQGLEYLHQHWILHRDLKPNNLLLDENGVLKLADFGLAKSFGSPNRA-YTHQ  160 (299)
T ss_dssp             CSEEHHHHHTTCCSSCCSSHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTCCEEECCCGGGSTTTSCCCC-CCCS
T ss_pred             hcchHHhhhhhcccCCCHHHHHHHHHHHHHHHHHhhccceecccCCcceEEecCCCccccccCccccccCCCccc-ccce
Confidence            976          3355555555555555             799999999999999999999999877554333 2334


Q ss_pred             eecccc----cc-cccCCCCCCC
Q 047066          239 QGTLGY----YL-HTSQGTLNKE  256 (256)
Q Consensus       239 ~Gt~~y----~~-~~~~~t~ksD  256 (256)
                      +||+.|    .+ ....++.++|
T Consensus       161 ~gt~~y~aPE~~~~~~~~~~~~D  183 (299)
T d1ua2a_         161 VVTRWYRAPELLFGARMYGVGVD  183 (299)
T ss_dssp             CCCCTTCCHHHHTTCSCCCHHHH
T ss_pred             ecChhhccHHHHccCCCCChhhh
Confidence            699999    33 3445677766

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=3.1e-27  Score=197.93  Aligned_cols=152  Identities=20%  Similarity=0.385  Sum_probs=117.6

Q ss_pred             CCCcccceeeeeCceEEEEEEEC-CCc----EEEEEEeccc-ChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEE
Q 047066          104 NNYAYDRMIGRGGYGTVFLGSLS-DNK----AIAIKKSRIV-YQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLL  177 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~V~~~~~~-~~~----~vavK~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~l  177 (256)
                      ++|++.+.||+|+||+||+|.+. +++    .||+|.++.. .....+++.+|+.++++++||||++++|+|.+++ .++
T Consensus         9 ~dy~~~~~lG~G~fG~Vy~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~g~~~~~~-~~~   87 (317)
T d1xkka_           9 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTST-VQL   87 (317)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEECC----CCEEEEEEEECC----CTHHHHHHHHHHHHHCCCTTBCCEEEEEESSS-EEE
T ss_pred             HHCEEeeEEecCCCeEEEEEEEcCCCCEEEEEEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCC-eeE
Confidence            46999999999999999999864 343    5899987643 3445678999999999999999999999998755 567


Q ss_pred             EEecCCCCC-----------CCHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCce
Q 047066          178 VNEFVKLPT-----------ISWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQ  233 (256)
Q Consensus       178 v~e~~~~~~-----------l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~  233 (256)
                      ++|++.+++           +++...+.++.|++             |||||+|||++.++.+||+|||+|+.+......
T Consensus        88 v~e~~~~~~l~~~~~~~~~~~~~~~~~~i~~qi~~gl~yLH~~~iiHrDlKp~NIll~~~~~~kl~DFGla~~~~~~~~~  167 (317)
T d1xkka_          88 ITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKE  167 (317)
T ss_dssp             EEECCTTCBHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEEETTEEEECCCSHHHHTTTTCC-
T ss_pred             EEEeccCCcccccccccccCCCHHHHHHHHHHHHHHHHHHHHcCcccCcchhhcceeCCCCCeEeeccccceeccccccc
Confidence            788887654           56777778888876             699999999999999999999999987654433


Q ss_pred             e-eeeeeecccc----cccccCCCCCCC
Q 047066          234 L-STMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       234 ~-~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      . .....||+.|    .+.++.+|.++|
T Consensus       168 ~~~~~~~gt~~y~APE~l~~~~~~~~sD  195 (317)
T d1xkka_         168 YHAEGGKVPIKWMALESILHRIYTHQSD  195 (317)
T ss_dssp             -------CCTTTSCHHHHHHCCCCHHHH
T ss_pred             ccccccccCccccChHHHhcCCCChhhh
Confidence            2 2345689999    567788888876

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.2e-27  Score=199.80  Aligned_cols=152  Identities=27%  Similarity=0.424  Sum_probs=119.2

Q ss_pred             cCCCcccceeeeeCceEEEEEEEC-CCc--EEEEEEeccc-ChhHHHHHHHHHHHHHhC-CCCcccceeeEEEECCEEEE
Q 047066          103 TNNYAYDRMIGRGGYGTVFLGSLS-DNK--AIAIKKSRIV-YQSQIEQCINKVVVLSQI-NHRNVVGLLGCCLETEVPLL  177 (256)
Q Consensus       103 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~--~vavK~~~~~-~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~l  177 (256)
                      -++|++.++||+|+||.||+|.++ ++.  .||||++... .....+.+.+|+.+|.++ +||||++++|++.+.+..++
T Consensus         9 ~~~~~~~~~iG~G~fg~Vy~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~~HpnIv~~~~~~~~~~~~~i   88 (309)
T d1fvra_           9 WNDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYL   88 (309)
T ss_dssp             GGGCEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC------CHHHHHHHHHTTCCCCTTBCCEEEEEEETTEEEE
T ss_pred             HHHcEEEEEEeeCCCcEEEEEEECCCCeEEEEEEEEECcccChHHHHHHHHHHHHHHhccCCCCEeeEEEEEecCCeeEE
Confidence            367889999999999999999975 444  5788887543 344557899999999999 79999999999999999999


Q ss_pred             EEecCCCCCC--------------------------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEE
Q 047066          178 VNEFVKLPTI--------------------------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKV  218 (256)
Q Consensus       178 v~e~~~~~~l--------------------------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki  218 (256)
                      ||||+++|+|                          ++....+++.|++             |||||+|||++.++.+||
T Consensus        89 V~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~~lH~~~iiHrDlkp~NIL~~~~~~~kl  168 (309)
T d1fvra_          89 AIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQKQFIHRDLAARNILVGENYVAKI  168 (309)
T ss_dssp             EECCCTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECGGGCEEE
T ss_pred             EEEecCCCcHHHHHhhccccccchhhhccccccCCCCHHHHHHHHHHHHHHHHhhhcCCccccccccceEEEcCCCceEE
Confidence            9999998664                          5566777788866             699999999999999999


Q ss_pred             EecCCceecCCCCceeeeeeeecccc----cccccCCCCCCC
Q 047066          219 CDFGASKLVPIDETQLSTMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       219 ~DFGla~~~~~~~~~~~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      +|||+|+.......  .....||+.|    .+..+.+|.+||
T Consensus       169 ~DfG~a~~~~~~~~--~~~~~gt~~y~aPE~l~~~~~~~~sD  208 (309)
T d1fvra_         169 ADFGLSRGQEVYVK--KTMGRLPVRWMAIESLNYSVYTTNSD  208 (309)
T ss_dssp             CCTTCEESSCEECC--C----CCTTTCCHHHHHHCEECHHHH
T ss_pred             cccccccccccccc--ccceecCCcccchHHhccCCCCccce
Confidence            99999986543221  2234588888    666777887776

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.94  E-value=1.2e-26  Score=190.73  Aligned_cols=154  Identities=21%  Similarity=0.311  Sum_probs=118.1

Q ss_pred             cCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEeccc---ChhHHHHHHHHHHHHHhCCCCcccceeeEEEECC----E
Q 047066          103 TNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIV---YQSQIEQCINKVVVLSQINHRNVVGLLGCCLETE----V  174 (256)
Q Consensus       103 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~----~  174 (256)
                      .++|++.+.||+|+||.||+|... +++.||+|.++..   +....+.+.+|+.+++.++||||+++++++...+    .
T Consensus         6 ~drY~i~~~lG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~~l~~~~hpniv~~~~~~~~~~~~~~~   85 (277)
T d1o6ya_           6 SDRYELGEILGFGGMSEVHLARDLRLHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPAGPL   85 (277)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSTTTTCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEEECSSSEE
T ss_pred             cceeEEeEEEeeCCCeEEEEEEECCCCCEEEEEEEchhhccCHHHHHHHHHHHHHHHhcCCCCCCcccceeeeccCCCce
Confidence            367999999999999999999974 7899999998643   2344567999999999999999999999998643    4


Q ss_pred             EEEEEecCCCCC----------CCHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCC
Q 047066          175 PLLVNEFVKLPT----------ISWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDE  231 (256)
Q Consensus       175 ~~lv~e~~~~~~----------l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~  231 (256)
                      +++||||+++++          +++.....++.|++             |||||+|||++.++..+|+|||.++......
T Consensus        86 ~~lvmE~~~g~~L~~~~~~~~~l~~~~~~~i~~qi~~al~~lH~~~iiHrDiKP~NIll~~~~~~~l~d~~~~~~~~~~~  165 (277)
T d1o6ya_          86 PYIVMEYVDGVTLRDIVHTEGPMTPKRAIEVIADACQALNFSHQNGIIHRDVKPANIMISATNAVKVMDFGIARAIADSG  165 (277)
T ss_dssp             EEEEEECCCEEEHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEETTSCEEECCCTTCEECC---
T ss_pred             EEEEEECCCCCEehhhhcccCCCCHHHHHHHHHHHHHHHHHHHhCCccCccccCcccccCccccceeehhhhhhhhcccc
Confidence            899999998844          56777777777766             6999999999999999999999998764332


Q ss_pred             c--eeeeeeeecccc----cccccCCCCCCC
Q 047066          232 T--QLSTMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       232 ~--~~~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      .  ......+||+.|    .+.+..+++++|
T Consensus       166 ~~~~~~~~~~Gt~~Y~aPE~~~~~~~~~~~D  196 (277)
T d1o6ya_         166 NSVTQTAAVIGTAQYLSPEQARGDSVDARSD  196 (277)
T ss_dssp             -------------TTCCHHHHTTCCCCHHHH
T ss_pred             ccccccccccCcccccCHHHHcCCCCCccee
Confidence            2  223456799999    556667887776

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=2.9e-27  Score=196.89  Aligned_cols=137  Identities=23%  Similarity=0.324  Sum_probs=108.0

Q ss_pred             CCCcccceeeeeCceEEEEEEECCCcEEEEEEecccChhHHHHHHHHHH--HHHhCCCCcccceeeEEEECC----EEEE
Q 047066          104 NNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVV--VLSQINHRNVVGLLGCCLETE----VPLL  177 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~--~l~~l~h~niv~l~~~~~~~~----~~~l  177 (256)
                      ++|.+.+.||+|+||.||+|+. +|+.||||+++...   .+.+..|.+  .+..++||||+++++++.+.+    ..++
T Consensus         3 ~~~~l~~~iG~G~fg~Vy~~~~-~g~~vAvK~~~~~~---~~~~~~e~ei~~~~~~~HpnIv~~~~~~~~~~~~~~~~~l   78 (303)
T d1vjya_           3 RTIVLQESIGKGRFGEVWRGKW-RGEEVAVKIFSSRE---ERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWL   78 (303)
T ss_dssp             GGEEEEEEEECCSSSEEEEEEE-TTEEEEEEEECGGG---HHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEE
T ss_pred             cEEEEEEEEeeCCCeEEEEEEE-CCEEEEEEEECccc---hhHHHHHHHHHHHhhCCCCcCcceEEEEEeCCCcceEEEE
Confidence            5688889999999999999997 68899999886432   234444544  456789999999999998754    6899


Q ss_pred             EEecCCCCCC---------CHHHHHHHHHHHH---------------------hccCCCcEEEcCCCcEEEEecCCceec
Q 047066          178 VNEFVKLPTI---------SWEVRIRIAAETA---------------------EDIKSINILLDDNYTTKVCDFGASKLV  227 (256)
Q Consensus       178 v~e~~~~~~l---------~~~~~~~~~~~i~---------------------rdlk~~NiLi~~~~~~ki~DFGla~~~  227 (256)
                      ||||+++|+|         ++..++.++.+++                     |||||+|||++.++.+||+|||+++..
T Consensus        79 v~Ey~~~g~L~~~l~~~~l~~~~~~~~~~~ia~gl~~lH~~~~~~~~~~~IvHrDlKp~NILl~~~~~~Kl~DFGl~~~~  158 (303)
T d1vjya_          79 VSDYHEHGSLFDYLNRYTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRH  158 (303)
T ss_dssp             EEECCTTCBHHHHHHHCCBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCEEECSCCCGGGEEECTTSCEEECCCTTCEEE
T ss_pred             EEecccCCCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCCeeccccCccceEEcCCCCeEEEecCccccc
Confidence            9999999775         5666667776654                     699999999999999999999999987


Q ss_pred             CCCCcee---eeeeeecccc
Q 047066          228 PIDETQL---STMVQGTLGY  244 (256)
Q Consensus       228 ~~~~~~~---~~~~~Gt~~y  244 (256)
                      .......   .....||+.|
T Consensus       159 ~~~~~~~~~~~~~~~gt~~y  178 (303)
T d1vjya_         159 DSATDTIDIAPNHRVGTKRY  178 (303)
T ss_dssp             ETTTTEECC----CCSCGGG
T ss_pred             cCCCcceeccccceecccCc
Confidence            6544332   2345699999

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=2.4e-27  Score=194.51  Aligned_cols=153  Identities=21%  Similarity=0.335  Sum_probs=112.7

Q ss_pred             cCCCcccceeeeeCceEEEEEEEC--CC--cEEEEEEeccc---ChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEE
Q 047066          103 TNNYAYDRMIGRGGYGTVFLGSLS--DN--KAIAIKKSRIV---YQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVP  175 (256)
Q Consensus       103 ~~~~~~~~~lg~G~~g~V~~~~~~--~~--~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~  175 (256)
                      .++|++.+.||+|+||+||+|+..  ++  ..||||++...   .....++|.+|+.+|++++||||++++|++.+ +..
T Consensus         7 ~~d~~~~~~iG~G~fg~Vy~~~~~~~~~~~~~vAiK~l~~~~~~~~~~~~~~~~Ei~~l~~l~H~nIv~~~g~~~~-~~~   85 (273)
T d1u46a_           7 EKDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLT-PPM   85 (273)
T ss_dssp             GGGEEEEEECC----CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSC
T ss_pred             hHHeEEEEEEecCCCeEEEEEEEECCCCcEEEEEEEEEChhhcCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEee-cch
Confidence            367999999999999999999853  22  37899987543   23445789999999999999999999999975 467


Q ss_pred             EEEEecCCCCC-----------CCHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCC
Q 047066          176 LLVNEFVKLPT-----------ISWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDE  231 (256)
Q Consensus       176 ~lv~e~~~~~~-----------l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~  231 (256)
                      ++||||+++++           +++...+.++.|++             |||||+|||++.++.+||+|||+++.+....
T Consensus        86 ~lv~e~~~~~~l~~~~~~~~~~l~~~~~~~~~~qi~~gl~ylH~~~iiHrDikp~NIll~~~~~vkl~DfGl~~~~~~~~  165 (273)
T d1u46a_          86 KMVTELAPLGSLLDRLRKHQGHFLLGTLSRYAVQVAEGMGYLESKRFIHRDLAARNLLLATRDLVKIGDFGLMRALPQND  165 (273)
T ss_dssp             EEEEECCTTCBHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEEEETTEEEECCCTTCEECCC-C
T ss_pred             heeeeeecCcchhhhhhcccCCCCHHHHHHHHHHHHHHHHHhhhCCEeeeeecHHHhccccccceeeccchhhhhcccCC
Confidence            89999998855           57777788888877             6999999999999999999999999876554


Q ss_pred             cee--eeeeeecccc----cccccCCCCCCC
Q 047066          232 TQL--STMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       232 ~~~--~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      ...  .....||+.|    .+.+..+|.++|
T Consensus       166 ~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~D  196 (273)
T d1u46a_         166 DHYVMQEHRKVPFAWCAPESLKTRTFSHASD  196 (273)
T ss_dssp             CEEEC-----CCGGGCCHHHHHHCEEEHHHH
T ss_pred             CcceecCccccCcccCCHHHHhCCCCCcchh
Confidence            332  2334577777    555666666665

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.6e-27  Score=198.13  Aligned_cols=159  Identities=18%  Similarity=0.324  Sum_probs=125.8

Q ss_pred             HHHhhcCCCcccceeeeeCceEEEEEEECC--------CcEEEEEEecccC-hhHHHHHHHHHHHHHhC-CCCcccceee
Q 047066           98 ELKIATNNYAYDRMIGRGGYGTVFLGSLSD--------NKAIAIKKSRIVY-QSQIEQCINKVVVLSQI-NHRNVVGLLG  167 (256)
Q Consensus        98 ~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~--------~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l-~h~niv~l~~  167 (256)
                      +|+++.++|++.+.||+|+||.||+|+...        +..||||+++... ......+.+|...+.++ +||||+++++
T Consensus         7 ~~~i~~~~~~l~~~iG~G~fg~Vy~~~~~~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~e~~~l~~~~~HpnIv~~~~   86 (299)
T d1fgka_           7 RWELPRDRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLG   86 (299)
T ss_dssp             TTBCCGGGEEEEEECC-----CEEEEEEECC----CCCEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEE
T ss_pred             cCcccHHHeEEeeEEeecCCcEEEEEEEcCCCcccccCceEEEEEEECcccChHHHHHHHHHHHHHHHhcCCCeEEeccc
Confidence            477888999999999999999999998532        2479999986544 45567899999999888 8999999999


Q ss_pred             EEEECCEEEEEEecCCCCC--------------------------CCHHHHHHHHHHHH-------------hccCCCcE
Q 047066          168 CCLETEVPLLVNEFVKLPT--------------------------ISWEVRIRIAAETA-------------EDIKSINI  208 (256)
Q Consensus       168 ~~~~~~~~~lv~e~~~~~~--------------------------l~~~~~~~~~~~i~-------------rdlk~~Ni  208 (256)
                      +|.+++..++||||+++|+                          +++...+.++.|++             |||||+||
T Consensus        87 ~~~~~~~~~~v~e~~~~g~l~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~ylH~~~ivHrDiKp~Ni  166 (299)
T d1fgka_          87 ACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLASKKCIHRDLAARNV  166 (299)
T ss_dssp             EECSSSSCEEEECCCTTCBHHHHHHTTSCC------------CCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGE
T ss_pred             ccccCCeEEEEEEccCCCcHHHHHHhhcCCccccccccccCccccCCHHHHHHHHHHHHHHHHHhhhCCEEeeeecccce
Confidence            9999999999999998864                          46666777777766             69999999


Q ss_pred             EEcCCCcEEEEecCCceecCCCCce-eeeeeeecccc----cccccCCCCCCC
Q 047066          209 LLDDNYTTKVCDFGASKLVPIDETQ-LSTMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       209 Li~~~~~~ki~DFGla~~~~~~~~~-~~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      |++.++.+||+|||+++........ ......||+.|    .+.++.+++|+|
T Consensus       167 Ll~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~l~~~~y~~k~D  219 (299)
T d1fgka_         167 LVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSD  219 (299)
T ss_dssp             EECTTCCEEECSTTCCCCGGGCCTTCCCTTSCCGGGGSCHHHHHHCCCCHHHH
T ss_pred             eecCCCCeEeccchhhccccccccccccccCCCChhhhhhhHhcCCCCCchhh
Confidence            9999999999999999987544322 22345689999    577788888876

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=8.9e-26  Score=190.23  Aligned_cols=146  Identities=18%  Similarity=0.175  Sum_probs=115.0

Q ss_pred             CCCccc-ceeeeeCceEEEEEEEC-CCcEEEEEEecccChhHHHHHHHHHHHHHhC-CCCcccceeeEEEE----CCEEE
Q 047066          104 NNYAYD-RMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVYQSQIEQCINKVVVLSQI-NHRNVVGLLGCCLE----TEVPL  176 (256)
Q Consensus       104 ~~~~~~-~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~----~~~~~  176 (256)
                      ++|.+. ++||+|+||.||+|... +++.||||+++..     ..+.+|+.++.++ +||||+++++++.+    .+.++
T Consensus        11 ~~y~i~~~~lG~G~fg~Vy~a~~~~~~~~vAiK~i~~~-----~~~~~E~~~~~~~~~hpnIv~l~~~~~~~~~~~~~~~   85 (335)
T d2ozaa1          11 DDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDC-----PKARREVELHWRASQCPHIVRIVDVYENLYAGRKCLL   85 (335)
T ss_dssp             GTEEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEECS-----HHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEEE
T ss_pred             cCEEEeeEEeeeccCeEEEEEEECCCCCEEEEEEECCc-----HHHHHHHHHHHHhcCCCCCCeEEEEEeecccCCCEEE
Confidence            578876 46999999999999974 6899999998642     4567899987655 89999999999875    46689


Q ss_pred             EEEecCCCCCC------------CHHHHHHHHHHHH-------------hccCCCcEEEcC---CCcEEEEecCCceecC
Q 047066          177 LVNEFVKLPTI------------SWEVRIRIAAETA-------------EDIKSINILLDD---NYTTKVCDFGASKLVP  228 (256)
Q Consensus       177 lv~e~~~~~~l------------~~~~~~~~~~~i~-------------rdlk~~NiLi~~---~~~~ki~DFGla~~~~  228 (256)
                      +|||||++|+|            ++.....++.|++             |||||+|||++.   ++.+||+|||+|+...
T Consensus        86 ivmEy~~gg~L~~~i~~~~~~~l~e~~~~~i~~qi~~al~ylH~~~iiHRDiKp~NIll~~~~~~~~~Kl~DFG~a~~~~  165 (335)
T d2ozaa1          86 IVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHSINIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETT  165 (335)
T ss_dssp             EEEECCCSEEHHHHHHSCSCCCEEHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEESCSSTTCCEEECCCTTCEECC
T ss_pred             EEEECCCCCcHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHcCCccccccccccccccccccccccccccceeeecc
Confidence            99999988654            5555666666655             799999999975   5679999999999875


Q ss_pred             CCCceeeeeeeecccc----cccccCCCCCCC
Q 047066          229 IDETQLSTMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       229 ~~~~~~~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      ....  ....+||+.|    .+.+..+++++|
T Consensus       166 ~~~~--~~~~~gt~~y~aPE~~~~~~y~~~~D  195 (335)
T d2ozaa1         166 SHNS--LTTPCYTPYYVAPEVLGPEKYDKSCD  195 (335)
T ss_dssp             CCCC--CCCCSCCCSSCCCCCCCGGGGSHHHH
T ss_pred             CCCc--cccccCCcccCCcHHHcCCCCCHHHH
Confidence            4432  3345699999    556667887776

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=4.7e-25  Score=182.21  Aligned_cols=152  Identities=23%  Similarity=0.320  Sum_probs=121.0

Q ss_pred             CCCcccceeeeeCceEEEEEEEC-CCcEEEEEEeccc--ChhHHHHHHHHHHHHHhCCCCcccceeeEEEECCEEEEEEe
Q 047066          104 NNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIV--YQSQIEQCINKVVVLSQINHRNVVGLLGCCLETEVPLLVNE  180 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e  180 (256)
                      ++|++.+.||+|+||+||+|... +++.||||+++..  ......++.+|+.+|+.++||||+++++++.+.+..++++|
T Consensus         2 ~ry~~i~~LG~G~fg~V~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~h~niv~~~~~~~~~~~~~iv~~   81 (292)
T d1unla_           2 QKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLVFE   81 (292)
T ss_dssp             CSEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEESSCSSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEE
T ss_pred             CCCEeeeEEecCcCeEEEEEEECCCCcEEEEEEEehhhCChHHHHHHHHHHHHHHhcCcCCEEeeccccccccceeEEee
Confidence            57999999999999999999975 6889999998543  34456789999999999999999999999999999999999


Q ss_pred             cCCC----------CCCCHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCceeeee
Q 047066          181 FVKL----------PTISWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQLSTM  237 (256)
Q Consensus       181 ~~~~----------~~l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~~~~  237 (256)
                      ++.+          +.+++.....++.|++             |||||+|||++.++.+||+|||.|+....+.... ..
T Consensus        82 ~~~~~~l~~~~~~~~~~~~~~~~~~~~q~~~aL~~lH~~~IvHrDiKP~NIli~~~~~~kl~DFG~a~~~~~~~~~~-~~  160 (292)
T d1unla_          82 FCDQDLKKYFDSCNGDLDPEIVKSFLFQLLKGLGFCHSRNVLHRDLKPQNLLINRNGELKLANFGLARAFGIPVRCY-SA  160 (292)
T ss_dssp             CCSEEHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTCCEEECCCTTCEECCSCCSCC-CS
T ss_pred             eccccccccccccccccchhHHHHHHHHHHHHHHHhhcCCEeeecccCcccccccCCceeeeecchhhcccCCCccc-ee
Confidence            9966          4456666666666655             6999999999999999999999999876543332 22


Q ss_pred             eeecccc----ccc-ccCCCCCCC
Q 047066          238 VQGTLGY----YLH-TSQGTLNKE  256 (256)
Q Consensus       238 ~~Gt~~y----~~~-~~~~t~ksD  256 (256)
                      ..+++.|    .+. ...++.++|
T Consensus       161 ~~~~~~~~~pe~~~~~~~~~~~~D  184 (292)
T d1unla_         161 EVVTLWYRPPDVLFGAKLYSTSID  184 (292)
T ss_dssp             CCSCGGGCCHHHHTTCSCCCTHHH
T ss_pred             eccccchhhhhHhccCCCCCchhh
Confidence            3355656    233 333577665

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=4.6e-26  Score=186.86  Aligned_cols=138  Identities=27%  Similarity=0.329  Sum_probs=112.0

Q ss_pred             CCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC---h---hHHHHHHHHHHHHHhCC--CCcccceeeEEEECCE
Q 047066          104 NNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY---Q---SQIEQCINKVVVLSQIN--HRNVVGLLGCCLETEV  174 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~---~~~~~~~~E~~~l~~l~--h~niv~l~~~~~~~~~  174 (256)
                      ++|++.+.||+|+||.||+|... +++.||+|.+....   .   ....++.+|+.++++++  ||||+++++++.+++.
T Consensus         4 ~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~~~h~nIv~~~~~~~~~~~   83 (273)
T d1xwsa_           4 SQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFERPDS   83 (273)
T ss_dssp             TTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEEEEEECSSE
T ss_pred             CeEEEeEEEeeCCCeEEEEEEECCCCCEEEEEEEehHHccchhhhhHHHHHHHHHHHHHHhccCCCCccEEEEEEeeCCe
Confidence            57999999999999999999975 68999999875421   1   11234678999999996  8999999999999999


Q ss_pred             EEEEEecCCC-----------CCCCHHHHHHHHHHHH-------------hccCCCcEEEcC-CCcEEEEecCCceecCC
Q 047066          175 PLLVNEFVKL-----------PTISWEVRIRIAAETA-------------EDIKSINILLDD-NYTTKVCDFGASKLVPI  229 (256)
Q Consensus       175 ~~lv~e~~~~-----------~~l~~~~~~~~~~~i~-------------rdlk~~NiLi~~-~~~~ki~DFGla~~~~~  229 (256)
                      .++||||+.+           +.+++.....++.|++             |||||+|||++. ++.+||+|||+|+....
T Consensus        84 ~~lv~e~~~~~~~l~~~~~~~~~l~e~~~~~~~~qi~~al~~lH~~~iiHrDiKp~NIll~~~~~~vkl~DFG~a~~~~~  163 (273)
T d1xwsa_          84 FVLILERPEPVQDLFDFITERGALQEELARSFFWQVLEAVRHCHNCGVLHRDIKDENILIDLNRGELKLIDFGSGALLKD  163 (273)
T ss_dssp             EEEEEECCSSEEEHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEETTTTEEEECCCTTCEECCS
T ss_pred             EEEEEEeccCcchHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCCccccCcccceEEecCCCeEEECccccceeccc
Confidence            9999999976           3456666677777766             699999999985 47999999999987643


Q ss_pred             CCceeeeeeeecccc
Q 047066          230 DETQLSTMVQGTLGY  244 (256)
Q Consensus       230 ~~~~~~~~~~Gt~~y  244 (256)
                      ..   .+...||+.|
T Consensus       164 ~~---~~~~~GT~~y  175 (273)
T d1xwsa_         164 TV---YTDFDGTRVY  175 (273)
T ss_dssp             SC---BCCCCSCGGG
T ss_pred             cc---ccccccCCCc
Confidence            32   3345699999

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=3.7e-25  Score=187.32  Aligned_cols=150  Identities=21%  Similarity=0.230  Sum_probs=117.0

Q ss_pred             cCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEeccc--ChhHHHHHHHHHHHHHhCCCCcccceeeEEEECC------
Q 047066          103 TNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIV--YQSQIEQCINKVVVLSQINHRNVVGLLGCCLETE------  173 (256)
Q Consensus       103 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~------  173 (256)
                      .++|++.+.||+|+||+||+|..+ +++.||||+++..  .....+.+.+|+.+|+.++||||++++++|...+      
T Consensus        17 ~~~Y~~i~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~hpniv~l~~~~~~~~~~~~~~   96 (346)
T d1cm8a_          17 RAVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMRHENVIGLLDVFTPDETLDDFT   96 (346)
T ss_dssp             BSSEEEEEEC------CEEEEEETTTCCEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCBTTBCCCSEEECSCSSTTTCC
T ss_pred             CCcEEEEEEEecCCCeEEEEEEECCCCCEEEEEEEchhhcChHHHHHHHHHHHHHHhcCCCCeeEEEEEeccCccccccc
Confidence            478999999999999999999975 6899999998643  3445678899999999999999999999998654      


Q ss_pred             EEEEEEecCCC--------CCCCHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCc
Q 047066          174 VPLLVNEFVKL--------PTISWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDET  232 (256)
Q Consensus       174 ~~~lv~e~~~~--------~~l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~  232 (256)
                      ..++||||+..        +.+++.....++.|++             |||||+|||++.++.+|++|||+|+...... 
T Consensus        97 ~~~lv~e~~~~~l~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~~IiHrDiKp~NIL~~~~~~~kl~Dfg~a~~~~~~~-  175 (346)
T d1cm8a_          97 DFYLVMPFMGTDLGKLMKHEKLGEDRIQFLVYQMLKGLRYIHAAGIIHRDLKPGNLAVNEDCELKILDFGLARQADSEM-  175 (346)
T ss_dssp             CCEEEEECCSEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCTTCEECCSSC-
T ss_pred             eEEEEEecccccHHHHHHhccccHHHHHHHHHHHHHHHHHHHhCCCcccccCcchhhcccccccccccccceeccCCcc-
Confidence            47999999954        5678888777777766             6999999999999999999999999865432 


Q ss_pred             eeeeeeeecccc----ccc-ccCCCCCCC
Q 047066          233 QLSTMVQGTLGY----YLH-TSQGTLNKE  256 (256)
Q Consensus       233 ~~~~~~~Gt~~y----~~~-~~~~t~ksD  256 (256)
                         +...||+.|    .+. ...++.++|
T Consensus       176 ---~~~~~t~~y~aPE~~~~~~~~~~~~D  201 (346)
T d1cm8a_         176 ---TGYVVTRWYRAPEVILNWMRYTQTVD  201 (346)
T ss_dssp             ---CSSCSCGGGCCTHHHHTTTCCCTTHH
T ss_pred             ---ccccccccccCHHHHcCCCCCCccch
Confidence               334699999    333 345577766

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=4.3e-25  Score=184.76  Aligned_cols=153  Identities=22%  Similarity=0.310  Sum_probs=116.2

Q ss_pred             CCCcccceeeeeCceEEEEEEEC-CCcEEEEEEeccc--ChhHHHHHHHHHHHHHhCCCCcccceeeEEEE--------C
Q 047066          104 NNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIV--YQSQIEQCINKVVVLSQINHRNVVGLLGCCLE--------T  172 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~--------~  172 (256)
                      ++|++.+.||+|+||+||+|... +|+.||||++...  ......++.+|+.+|++++|||++++++++..        .
T Consensus        10 ~rY~i~~~LG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~h~nii~~~~~~~~~~~~~~~~~   89 (318)
T d3blha1          10 SKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKASPYNRCK   89 (318)
T ss_dssp             GGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEC----CTTSSCHHHHHHHHHHHHCCCTTBCCEEEEEEC---------
T ss_pred             CCEEEEEEEecCcCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHHHhcCCCccceEeeeecccccccccC
Confidence            68999999999999999999975 7899999987543  23344678999999999999999999998864        3


Q ss_pred             CEEEEEEecCCC----------CCCCHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCC
Q 047066          173 EVPLLVNEFVKL----------PTISWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPI  229 (256)
Q Consensus       173 ~~~~lv~e~~~~----------~~l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~  229 (256)
                      +..+++|||+++          ..++......++.|++             |||||+|||++.++.+||+|||+|+.+..
T Consensus        90 ~~~~iv~e~~~~~~~~~~~~~~~~~~~~~~~~i~~qil~~l~~lH~~~ivHrDlKp~NILl~~~~~~kl~dfg~~~~~~~  169 (318)
T d3blha1          90 GSIYLVFDFCEHDLAGLLSNVLVKFTLSEIKRVMQMLLNGLYYIHRNKILHRDMKAANVLITRDGVLKLADFGLARAFSL  169 (318)
T ss_dssp             -CEEEEEECCCEEHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTSCEEECCCTTCEECCC
T ss_pred             ceEEEEEeccCCCccchhhhcccccccHHHHHHHHHHHHHHHHhccCCEEecCcCchheeecCCCcEEeeecceeeeccc
Confidence            458999999976          3345555566666655             79999999999999999999999987754


Q ss_pred             CCce---eeeeeeecccc----cc-cccCCCCCCC
Q 047066          230 DETQ---LSTMVQGTLGY----YL-HTSQGTLNKE  256 (256)
Q Consensus       230 ~~~~---~~~~~~Gt~~y----~~-~~~~~t~ksD  256 (256)
                      ....   .....+||+.|    .+ ....+++|+|
T Consensus       170 ~~~~~~~~~~~~~gT~~Y~aPE~~~~~~~~~~k~D  204 (318)
T d3blha1         170 AKNSQPNRYTNRVVTLWYRPPELLLGERDYGPPID  204 (318)
T ss_dssp             -----CCCCCSCCSCGGGCCHHHHTTCSSCCTHHH
T ss_pred             ccccccccccceecCHHHhhHHHHcCCCCCCcHHH
Confidence            3222   12234699999    33 3345777776

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=9.6e-25  Score=185.05  Aligned_cols=146  Identities=24%  Similarity=0.309  Sum_probs=114.9

Q ss_pred             CCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccChhHHHHHHHHHHHHHhCCCCcccceeeEEEEC------CEEEE
Q 047066          105 NYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVGLLGCCLET------EVPLL  177 (256)
Q Consensus       105 ~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~------~~~~l  177 (256)
                      +|+..++||+|+||+||+|+.. +++.||||++......    ..+|+.+|++++||||+++++++...      ..+++
T Consensus        21 ~Y~~~k~LG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~----~~~Ei~il~~l~h~niv~~~~~~~~~~~~~~~~~~~l   96 (350)
T d1q5ka_          21 SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRF----KNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNL   96 (350)
T ss_dssp             EEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSSS----CCHHHHHHHHCCCTTBCCEEEEEEEC--CCSCCEEEE
T ss_pred             CcEeeeEEeeCcCeEEEEEEECCCCCEEEEEEECccchH----HHHHHHHHHhcCCCCCCcEEEEEEecCccCCceEEEE
Confidence            5888899999999999999975 6899999998654322    24699999999999999999998643      34789


Q ss_pred             EEecCCCC-------------CCCHHHHHHHHHHHH-------------hccCCCcEEEcCCC-cEEEEecCCceecCCC
Q 047066          178 VNEFVKLP-------------TISWEVRIRIAAETA-------------EDIKSINILLDDNY-TTKVCDFGASKLVPID  230 (256)
Q Consensus       178 v~e~~~~~-------------~l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~-~~ki~DFGla~~~~~~  230 (256)
                      ||||++++             .+++.....++.|++             |||||+|||++.++ .+||+|||+|+.+...
T Consensus        97 v~Ey~~~~~~~~l~~~~~~~~~l~~~~~~~i~~qil~aL~yLH~~~IiHrDiKp~NILl~~~~~~~kl~DFG~a~~~~~~  176 (350)
T d1q5ka_          97 VLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSFGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRG  176 (350)
T ss_dssp             EEECCSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHTTTEECCCCCGGGEEECTTTCCEEECCCTTCEECCTT
T ss_pred             EEeccCCccHHHHHhhhhccCCCCHHHHHHHHHHHHHHHHHHHhcCCcccCCCcceEEEecCCCceeEecccchhhccCC
Confidence            99999763             467777777777766             69999999999775 8999999999987544


Q ss_pred             Cceeeeeeeecccc-----cccccCCCCCCC
Q 047066          231 ETQLSTMVQGTLGY-----YLHTSQGTLNKE  256 (256)
Q Consensus       231 ~~~~~~~~~Gt~~y-----~~~~~~~t~ksD  256 (256)
                      ...  ....||+.|     ......++.++|
T Consensus       177 ~~~--~~~~gt~~y~aPE~~~~~~~~~~~~D  205 (350)
T d1q5ka_         177 EPN--VSYICSRYYRAPELIFGATDYTSSID  205 (350)
T ss_dssp             SCC--CSCCSCTTSCCHHHHTTCSSCCTHHH
T ss_pred             ccc--ccccccccccChHHhhcccCCCccee
Confidence            322  334688888     233456777766

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

Probab=99.91  E-value=1.4e-24  Score=182.43  Aligned_cols=148  Identities=18%  Similarity=0.259  Sum_probs=117.5

Q ss_pred             CCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccChhHHHHHHHHHHHHHhCC-CCcccceeeEEEE--CCEEEEEE
Q 047066          104 NNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVYQSQIEQCINKVVVLSQIN-HRNVVGLLGCCLE--TEVPLLVN  179 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~l~~~~~~--~~~~~lv~  179 (256)
                      ++|++.+.||+|+||+||+|+.. +++.||+|+++...   .+++.+|+.+|+.++ ||||+++++++..  ....++||
T Consensus        35 d~y~i~~~LG~G~fg~V~~a~~~~~~~~vAiK~i~~~~---~~~~~~Ei~il~~l~~hpnIv~~~~~~~~~~~~~~~~v~  111 (328)
T d3bqca1          35 DDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPVK---KKKIKREIKILENLRGGPNIITLADIVKDPVSRTPALVF  111 (328)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSSC---HHHHHHHHHHHHHHTTSTTBCCEEEEEECTTTCSEEEEE
T ss_pred             cCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEECHHH---HHHHHHHHHHHHhccCCCCCcEEEEEEEecCCCceeEEE
Confidence            57999999999999999999974 68999999986543   356889999999994 9999999999985  35689999


Q ss_pred             ecCCCCC-------CCHHHHHHHHHHHH-------------hccCCCcEEEcCCC-cEEEEecCCceecCCCCceeeeee
Q 047066          180 EFVKLPT-------ISWEVRIRIAAETA-------------EDIKSINILLDDNY-TTKVCDFGASKLVPIDETQLSTMV  238 (256)
Q Consensus       180 e~~~~~~-------l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~-~~ki~DFGla~~~~~~~~~~~~~~  238 (256)
                      ||+.+++       ++......++.|++             |||||+|||++.++ .+||+|||+|+.......  ....
T Consensus       112 e~~~~~~L~~~~~~l~e~~i~~i~~qil~aL~~LH~~gIvHrDiKp~NILi~~~~~~vkl~DFG~a~~~~~~~~--~~~~  189 (328)
T d3bqca1         112 EHVNNTDFKQLYQTLTDYDIRFYMYEILKALDYCHSMGIMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHPGQE--YNVR  189 (328)
T ss_dssp             ECCCSCBGGGTTTSCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEETTTTEEEECCGGGCEECCTTCC--CCSC
T ss_pred             eecCCCcHHHHhcCCCHHHHHHHHHHHHHHHHHHhhcccccccccccceEEcCCCCeeeecccccceeccCCCc--cccc
Confidence            9999865       56677777777766             69999999998655 699999999998754432  2345


Q ss_pred             eecccc----c-ccccCCCCCCC
Q 047066          239 QGTLGY----Y-LHTSQGTLNKE  256 (256)
Q Consensus       239 ~Gt~~y----~-~~~~~~t~ksD  256 (256)
                      .||+.|    . .....++.++|
T Consensus       190 ~~t~~y~aPE~~~~~~~~~~~~D  212 (328)
T d3bqca1         190 VASRYFKGPELLVDYQMYDYSLD  212 (328)
T ss_dssp             CSCGGGCCHHHHTTCCCCCTHHH
T ss_pred             ccCccccCcccccCCCCCCcccc
Confidence            689988    2 22334566655

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1e-24  Score=184.56  Aligned_cols=152  Identities=22%  Similarity=0.312  Sum_probs=114.0

Q ss_pred             CCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC-hhHHHHHHHHHHHHHhCCCCcccceeeEEEECC-----EEE
Q 047066          104 NNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY-QSQIEQCINKVVVLSQINHRNVVGLLGCCLETE-----VPL  176 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~-----~~~  176 (256)
                      ++|++.+.||+|+||+||+|..+ +++.||||.+.... ....+++++|+.+|+.++||||+++++++....     ..+
T Consensus         8 ~rY~~~~~LG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~Ei~il~~l~hp~iv~~~~~~~~~~~~~~~~~~   87 (345)
T d1pmea_           8 PRYTNLSYIGEGAYGMVCSAYDNVNKVRVAIKKISPFEHQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIEQMKDVY   87 (345)
T ss_dssp             TTEEEEEECC---CCCEEEEEETTTCSEEEEEEECCTTCHHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSSTTTCCCEE
T ss_pred             CCeEEEEEEeeccCeEEEEEEECCCCcEEEEEEEehhcChHHHHHHHHHHHHHHHcCCCCCCcEEEEEeeccccccceEE
Confidence            57999999999999999999864 79999999986543 455678999999999999999999999997643     345


Q ss_pred             EEEecCCCC---------CCCHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCce-
Q 047066          177 LVNEFVKLP---------TISWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQ-  233 (256)
Q Consensus       177 lv~e~~~~~---------~l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~-  233 (256)
                      +++ ++.++         .+++.....++.|++             |||||+|||++.++.+||+|||+|+........ 
T Consensus        88 l~~-~~~~g~L~~~l~~~~l~~~~i~~i~~qil~al~yLH~~~iiHRDIKp~NILl~~~~~~kl~DfG~a~~~~~~~~~~  166 (345)
T d1pmea_          88 LVT-HLMGADLYKLLKTQHLSNDHICYFLYQILRGLKYIHSANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDHT  166 (345)
T ss_dssp             EEE-ECCCEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCTTCEECCGGGCBC
T ss_pred             EEE-eecCCchhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHCCCcCCCCCcceEEECCCCCEEEcccCceeeccCCCccc
Confidence            554 55554         456666677777765             799999999999999999999999876433222 


Q ss_pred             -eeeeeeecccc----cc-cccCCCCCCC
Q 047066          234 -LSTMVQGTLGY----YL-HTSQGTLNKE  256 (256)
Q Consensus       234 -~~~~~~Gt~~y----~~-~~~~~t~ksD  256 (256)
                       .....+||+.|    .+ ....+++++|
T Consensus       167 ~~~~~~~gt~~y~aPE~l~~~~~~~~~~D  195 (345)
T d1pmea_         167 GFLTEYVATRWYRAPEIMLNSKGYTKSID  195 (345)
T ss_dssp             CTTCCCCSCGGGCCGGGTTTBCSCSTHHH
T ss_pred             eeeccccccceechHHHhhcCCCCCchhh
Confidence             12345699999    23 3445566655

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=8.6e-25  Score=181.86  Aligned_cols=151  Identities=28%  Similarity=0.353  Sum_probs=117.3

Q ss_pred             CCCcccceeeeeCceEEEEEEEC-C-CcEEEEEEecccC--hhHHHHHHHHHHHHHhC---CCCcccceeeEEEE-----
Q 047066          104 NNYAYDRMIGRGGYGTVFLGSLS-D-NKAIAIKKSRIVY--QSQIEQCINKVVVLSQI---NHRNVVGLLGCCLE-----  171 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~V~~~~~~-~-~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l---~h~niv~l~~~~~~-----  171 (256)
                      ++|++.+.||+|+||+||+|... + ++.||||+++...  ......+.+|+.+++.+   +||||+++++++..     
T Consensus         7 ~~Y~i~~~LG~G~fg~V~~a~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~~l~~l~~~~HpnIv~~~~~~~~~~~~~   86 (305)
T d1blxa_           7 QQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRTDR   86 (305)
T ss_dssp             GTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTTSCBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEEECSS
T ss_pred             CCEEEEEEEecccCeEEEEEEEECCCCEEEEEEEEehhhccchHHHHHHHHHHHHHHHhhcCCCCcceeeeeeccccccc
Confidence            68999999999999999999974 4 5679999875432  22234566788877665   79999999999863     


Q ss_pred             CCEEEEEEecCCCCC-----------CCHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceec
Q 047066          172 TEVPLLVNEFVKLPT-----------ISWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLV  227 (256)
Q Consensus       172 ~~~~~lv~e~~~~~~-----------l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~  227 (256)
                      ....+++|||+.++.           +++.....++.|++             |||||+|||+++++.+||+|||+++..
T Consensus        87 ~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~ivHrDiKp~NILi~~~~~~kl~dfg~~~~~  166 (305)
T d1blxa_          87 ETKLTLVFEHVDQDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLHSHRVVHRDLKPQNILVTSSGQIKLADFGLARIY  166 (305)
T ss_dssp             EEEEEEEEECCSCBHHHHHHHSCTTCSCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTCCEEECSCCSCCCC
T ss_pred             CceEEEEEEeccCCchhhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhCCEEecCCCccEEEEcCCCCeeecchhhhhhh
Confidence            246899999998743           45666666666655             799999999999999999999999875


Q ss_pred             CCCCceeeeeeeecccc----cccccCCCCCCC
Q 047066          228 PIDETQLSTMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       228 ~~~~~~~~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      ...  .......||+.|    .+.+..++.++|
T Consensus       167 ~~~--~~~~~~~gT~~Y~APE~~~~~~y~~~~D  197 (305)
T d1blxa_         167 SFQ--MALTSVVVTLWYRAPEVLLQSSYATPVD  197 (305)
T ss_dssp             CGG--GGGCCCCCCCTTCCHHHHTTCCCCTHHH
T ss_pred             ccc--ccCCCcccChhhcCcchhcCCCCChheh
Confidence            432  223445799999    567788888877

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.91  E-value=3.3e-24  Score=177.45  Aligned_cols=152  Identities=21%  Similarity=0.219  Sum_probs=119.6

Q ss_pred             cCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccChhHHHHHHHHHHHHHhCC-CCcccceeeEEEECCEEEEEEe
Q 047066          103 TNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVYQSQIEQCINKVVVLSQIN-HRNVVGLLGCCLETEVPLLVNE  180 (256)
Q Consensus       103 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~l~~~~~~~~~~~lv~e  180 (256)
                      .++|++.+.||+|+||+||+|.+. +++.||+|.+....  ..+.+.+|++.++.++ |+|++.+++++......++|||
T Consensus         4 g~~Y~i~~~iG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~--~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~~vme   81 (293)
T d1csna_           4 GVHYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRS--DAPQLRDEYRTYKLLAGCTGIPNVYYFGQEGLHNVLVID   81 (293)
T ss_dssp             TTTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEECCT--TSCCHHHHHHHHHHTTTCTTCCCEEEEEEETTEEEEEEE
T ss_pred             CCceEEEEEEecCCCeEEEEEEECCCCCEEEEEEEcccc--CcHHHHHHHHHHHHhcCCCCCCEEEEEeecCCccEEEEE
Confidence            468999999999999999999975 68899999875432  2245678999999995 5999999999999999999999


Q ss_pred             cCCC----------CCCCHHHHHHHHHHHH-------------hccCCCcEEEcC-----CCcEEEEecCCceecCCCCc
Q 047066          181 FVKL----------PTISWEVRIRIAAETA-------------EDIKSINILLDD-----NYTTKVCDFGASKLVPIDET  232 (256)
Q Consensus       181 ~~~~----------~~l~~~~~~~~~~~i~-------------rdlk~~NiLi~~-----~~~~ki~DFGla~~~~~~~~  232 (256)
                      |+.+          ..++......++.|++             |||||+|||++.     ++.+||+|||+|+.+.....
T Consensus        82 ~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~~~l~~lH~~giiHrDiKp~Nili~~~~~~~~~~vkl~DFG~a~~~~~~~~  161 (293)
T d1csna_          82 LLGPSLEDLLDLCGRKFSVKTVAMAAKQMLARVQSIHEKSLVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVKFYRDPVT  161 (293)
T ss_dssp             CCCCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHTTTEECCCCCGGGEEECCSSSTTTTCEEECCCTTCEESBCTTT
T ss_pred             ecCCCHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHCCceeccCCccceeecCcccccCCceEEcccceeEEcccCcc
Confidence            9954          3456666666776655             799999999974     56899999999998754322


Q ss_pred             e------eeeeeeecccc----cccccCCCCCCC
Q 047066          233 Q------LSTMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       233 ~------~~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      .      .....+||+.|    .+.+..+++++|
T Consensus       162 ~~~~~~~~~~~~~GT~~y~aPE~~~~~~~~~~~D  195 (293)
T d1csna_         162 KQHIPYREKKNLSGTARYMSINTHLGREQSRRDD  195 (293)
T ss_dssp             CCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHH
T ss_pred             ccceeecccCceEEchhhcCHHHhcCCCCChHHH
Confidence            1      12345799999    555667887776

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=2.3e-25  Score=186.72  Aligned_cols=153  Identities=26%  Similarity=0.281  Sum_probs=117.4

Q ss_pred             CCCcccceeeeeCceEEEEEEEC----CCcEEEEEEeccc----ChhHHHHHHHHHHHHHhCCC-CcccceeeEEEECCE
Q 047066          104 NNYAYDRMIGRGGYGTVFLGSLS----DNKAIAIKKSRIV----YQSQIEQCINKVVVLSQINH-RNVVGLLGCCLETEV  174 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~V~~~~~~----~~~~vavK~~~~~----~~~~~~~~~~E~~~l~~l~h-~niv~l~~~~~~~~~  174 (256)
                      ++|++.+.||+|+||+||+|...    +|+.||+|.++..    +....+.+.+|+.++++++| |||+++++++.+.+.
T Consensus        24 ~~y~~~~~IG~G~fg~Vy~~~~~~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~~E~~il~~l~h~pnIv~~~~~~~~~~~  103 (322)
T d1vzoa_          24 ENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTETK  103 (322)
T ss_dssp             GGEEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEEEETTE
T ss_pred             hceEEEEEEecCCCeEEEEEEECccCCCCcEEEEEEEehHHhccchHHHHHHHHHHHHHHhccCCCeEEEeeeeeccCCc
Confidence            67999999999999999999852    4789999987532    12234668899999999965 899999999999999


Q ss_pred             EEEEEecCCCCCC----------CHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCC
Q 047066          175 PLLVNEFVKLPTI----------SWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDE  231 (256)
Q Consensus       175 ~~lv~e~~~~~~l----------~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~  231 (256)
                      .+++|||+.+++|          +......++.|++             |||||+|||++.++.+||+|||+|+.+....
T Consensus       104 ~~~v~e~~~~~~L~~~i~~~~~~~e~~~~~~~~Qi~~al~~lH~~~ivHrDiKp~Nill~~~~~vkL~DFG~a~~~~~~~  183 (322)
T d1vzoa_         104 LHLILDYINGGELFTHLSQRERFTEHEVQIYVGEIVLALEHLHKLGIIYRDIKLENILLDSNGHVVLTDFGLSKEFVADE  183 (322)
T ss_dssp             EEEEECCCCSCBHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTSCEEESCSSEEEECCGGG
T ss_pred             eeeeeecccccHHHHHHHhcccccHHHHHHHHHHHHHHHHHhhcCCEEeccCCccceeecCCCCEEEeeccchhhhcccc
Confidence            9999999999776          3333344444444             6999999999999999999999999875544


Q ss_pred             ceeeeeeeecccc----cccc--cCCCCCCC
Q 047066          232 TQLSTMVQGTLGY----YLHT--SQGTLNKE  256 (256)
Q Consensus       232 ~~~~~~~~Gt~~y----~~~~--~~~t~ksD  256 (256)
                      ........||+.|    .+.+  ..++.++|
T Consensus       184 ~~~~~~~~g~~~~~~pe~~~~~~~~~~~ksD  214 (322)
T d1vzoa_         184 TERAYDFCGTIEYMAPDIVRGGDSGHDKAVD  214 (322)
T ss_dssp             GGGGCGGGSCCTTCCHHHHTTCC---CTHHH
T ss_pred             cccccccccccccchhHHhhcCCcCCCchhh
Confidence            4434445688888    2222  24566665

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=4.4e-24  Score=181.28  Aligned_cols=151  Identities=23%  Similarity=0.268  Sum_probs=114.1

Q ss_pred             CCCcccceeeeeCceEEEEEEEC-CCcEEEEEEeccc--ChhHHHHHHHHHHHHHhCCCCcccceeeEEEE------CCE
Q 047066          104 NNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIV--YQSQIEQCINKVVVLSQINHRNVVGLLGCCLE------TEV  174 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~------~~~  174 (256)
                      ++|++.+.||+|+||+||+|.+. +|+.||||++...  .......+.+|+.+++.++||||+++++++..      .+.
T Consensus        17 ~~Y~i~~~LG~G~fg~V~~~~d~~t~~~vAvK~i~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~~~~~f~~~~~~~~~~~   96 (355)
T d2b1pa1          17 KRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEFQD   96 (355)
T ss_dssp             TTEEEEEECSCC--CEEEEEEETTTTEEEEEEEEESTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCCSTTTCCE
T ss_pred             CCeEEEEEeecCcCeEEEEEEECCCCCEEEEEEEChhhcCHHHHHHHHHHHHHHHhcCCCCeeEEEEEEecccccccCce
Confidence            57999999999999999999976 6999999998643  34555678999999999999999999999964      368


Q ss_pred             EEEEEecCCCC-------CCCHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCcee
Q 047066          175 PLLVNEFVKLP-------TISWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDETQL  234 (256)
Q Consensus       175 ~~lv~e~~~~~-------~l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~~~  234 (256)
                      +++||||+.++       .+++.....++.|++             |||||+|||++.++.+|++|||+++......  .
T Consensus        97 ~~iv~Ey~~~~l~~~~~~~~~~~~i~~~~~qil~gl~~LH~~giiHrDlKP~Nil~~~~~~~kl~df~~~~~~~~~~--~  174 (355)
T d2b1pa1          97 VYLVMELMDANLCQVIQMELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSF--M  174 (355)
T ss_dssp             EEEEEECCSEEHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTCCEEECCCCC-----------
T ss_pred             eEEEEeccchHHHHhhhcCCCHHHHHHHHHHHHHHHHHhhhcccccccCCccccccccccceeeechhhhhcccccc--c
Confidence            89999999774       456677777776665             6999999999999999999999998764332  2


Q ss_pred             eeeeeecccc----cccccCCCCCCC
Q 047066          235 STMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       235 ~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      .+..+||+.|    .+.+..+++++|
T Consensus       175 ~~~~~~t~~y~aPE~l~~~~~~~~~D  200 (355)
T d2b1pa1         175 MTPYVVTRYYRAPEVILGMGYKENVD  200 (355)
T ss_dssp             ------CCTTCCHHHHTTCCCCTTHH
T ss_pred             cccccccccccChhhhcCCCCCCCcc
Confidence            3445699999    566777888876

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.90  E-value=9.8e-24  Score=174.97  Aligned_cols=151  Identities=21%  Similarity=0.283  Sum_probs=116.7

Q ss_pred             CCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccChhHHHHHHHHHHHHHhCCCCcccc-eeeEEEECCEEEEEEec
Q 047066          104 NNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNVVG-LLGCCLETEVPLLVNEF  181 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~-l~~~~~~~~~~~lv~e~  181 (256)
                      ++|++.+.||+|+||.||+|.+. +++.||||.+.....  .+++..|+++++.++|+|++. +.++....+..++||||
T Consensus         7 ~rY~l~~~iG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~--~~~~~~E~~i~~~l~~~~~i~~~~~~~~~~~~~~ivme~   84 (299)
T d1ckia_           7 NRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTK--HPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVMEL   84 (299)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEESCTT--SCCHHHHHHHHHHSTTSTTCCCEEEEEEETTEEEEEEEC
T ss_pred             CEEEEeEEEeeCCCcEEEEEEECCCCCEEEEEEEchhcc--CHHHHHHHHHHHHccCCCcccEEEEEEecCCEEEEEEEE
Confidence            56999999999999999999974 689999998765332  245788999999997766554 55556778899999999


Q ss_pred             CCC----------CCCCHHHHHHHHHHHH-------------hccCCCcEEEc---CCCcEEEEecCCceecCCCCce--
Q 047066          182 VKL----------PTISWEVRIRIAAETA-------------EDIKSINILLD---DNYTTKVCDFGASKLVPIDETQ--  233 (256)
Q Consensus       182 ~~~----------~~l~~~~~~~~~~~i~-------------rdlk~~NiLi~---~~~~~ki~DFGla~~~~~~~~~--  233 (256)
                      +.+          +.+++.....++.|++             |||||+|||++   .+..+||+|||+|+.+......  
T Consensus        85 ~~~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~iiHrDiKp~NIl~~~~~~~~~vkl~DFG~a~~~~~~~~~~~  164 (299)
T d1ckia_          85 LGPSLEDLFNFCSRKFSLKTVLLLADQMISRIEYIHSKNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDARTHQH  164 (299)
T ss_dssp             CCCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECCGGGTTCEEECCCSSCEECBCTTTCCB
T ss_pred             cCCchhhhhhhccCCCcHHHHHHHHHHHHHHHHHHHHCCeeeccCCHhhccccccCCCceeeeeccCcceeccccccccc
Confidence            966          4467777777777766             79999999985   4557999999999987644322  


Q ss_pred             ----eeeeeeecccc----cccccCCCCCCC
Q 047066          234 ----LSTMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       234 ----~~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                          ......||+.|    ...+..++.++|
T Consensus       165 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~D  195 (299)
T d1ckia_         165 IPYRENKNLTGTARYASINTHLGIEQSRRDD  195 (299)
T ss_dssp             CCCCBCCSCCCCSSSCCHHHHTTBCCCHHHH
T ss_pred             eeccccCCcCCCccccCHHHHhCCCCCChhh
Confidence                22345799999    555666787776

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=6.2e-23  Score=173.55  Aligned_cols=150  Identities=18%  Similarity=0.245  Sum_probs=111.6

Q ss_pred             cCCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccC--hhHHHHHHHHHHHHHhCCCCcccceeeEEEECC-----E
Q 047066          103 TNNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVY--QSQIEQCINKVVVLSQINHRNVVGLLGCCLETE-----V  174 (256)
Q Consensus       103 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~-----~  174 (256)
                      .++|++.+.||+|+||+||+|+.. +++.||||+++...  ....+++.+|+.+|+.++|||++++++++....     .
T Consensus        17 ~~rY~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~h~~iv~~~~~~~~~~~~~~~~   96 (348)
T d2gfsa1          17 PERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFN   96 (348)
T ss_dssp             ETTEEEEEECGGGTTSSEEEEEETTTTEEEEEEECSCTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSTTTCC
T ss_pred             CCCeEEEEEEecCCCeEEEEEEECCCCCEEEEEEECchhcChHHHHHHHHHHHHHHhcCCCCeeeEEEEEeeccccccCc
Confidence            367999999999999999999974 79999999986543  344567899999999999999999999986432     3


Q ss_pred             EEEEEecCCCCC---------CCHHHHHHHHHHHH-------------hccCCCcEEEcCCCcEEEEecCCceecCCCCc
Q 047066          175 PLLVNEFVKLPT---------ISWEVRIRIAAETA-------------EDIKSINILLDDNYTTKVCDFGASKLVPIDET  232 (256)
Q Consensus       175 ~~lv~e~~~~~~---------l~~~~~~~~~~~i~-------------rdlk~~NiLi~~~~~~ki~DFGla~~~~~~~~  232 (256)
                      .+++++++.+++         +++.....++.|++             |||||+|||++.++.+|++|||+|......  
T Consensus        97 ~~~i~~~~~gg~L~~~~~~~~l~e~~~~~i~~qil~aL~~LH~~giiHrDiKp~NILi~~~~~~kl~dfg~a~~~~~~--  174 (348)
T d2gfsa1          97 DVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDE--  174 (348)
T ss_dssp             CCEEEEECCSEEHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTCCEEECCC----CCTGG--
T ss_pred             eEEEEEeecCCchhhhcccccccHHHHHHHHHHHHHHHHHHHhCCCcccccCCccccccccccccccccchhcccCcc--
Confidence            355566666644         56666667776665             699999999999999999999999865422  


Q ss_pred             eeeeeeeecccc-----cccccCCCCCCC
Q 047066          233 QLSTMVQGTLGY-----YLHTSQGTLNKE  256 (256)
Q Consensus       233 ~~~~~~~Gt~~y-----~~~~~~~t~ksD  256 (256)
                        .....||+.|     ......++.++|
T Consensus       175 --~~~~~g~~~y~apE~~~~~~~~~~~~D  201 (348)
T d2gfsa1         175 --MTGYVATRWYRAPEIMLNWMHYNQTVD  201 (348)
T ss_dssp             --GSSSCHHHHTSCHHHHTTCSCCCTTHH
T ss_pred             --cccccccccccCchhhcCCccCCcccc
Confidence              2234588888     233334566665

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.78  E-value=3.9e-19  Score=150.52  Aligned_cols=148  Identities=22%  Similarity=0.223  Sum_probs=110.5

Q ss_pred             CCCcccceeeeeCceEEEEEEEC-CCcEEEEEEecccChhHHHHHHHHHHHHHhCC-----------CCcccceeeEEEE
Q 047066          104 NNYAYDRMIGRGGYGTVFLGSLS-DNKAIAIKKSRIVYQSQIEQCINKVVVLSQIN-----------HRNVVGLLGCCLE  171 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-----------h~niv~l~~~~~~  171 (256)
                      .+|++.+.||+|+||+||+|+.. +|+.||||+++... ...+.+.+|+.+++.++           |+||+++++++..
T Consensus        13 ~rY~i~~~LG~G~fg~Vy~~~~~~~g~~vAvKvi~~~~-~~~~~~~~Ei~~l~~l~~~~~~~~~~~~~~~iv~~~~~~~~   91 (362)
T d1q8ya_          13 ARYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGDK-VYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHFNH   91 (362)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCH-HHHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEEEEE
T ss_pred             CcEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeccc-cchHHHHHHHHHHHHhcchhhhhhhhcCcCceEEEEEEeee
Confidence            35999999999999999999975 78999999987533 33467788999888775           5789999998864


Q ss_pred             --CCEEEEEEecCCC-------------CCCCHHHHHHHHHHHH--------------hccCCCcEEEcCCC------cE
Q 047066          172 --TEVPLLVNEFVKL-------------PTISWEVRIRIAAETA--------------EDIKSINILLDDNY------TT  216 (256)
Q Consensus       172 --~~~~~lv~e~~~~-------------~~l~~~~~~~~~~~i~--------------rdlk~~NiLi~~~~------~~  216 (256)
                        ....+.+++++..             ..++......++.|++              |||||+|||++.++      .+
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~qil~al~~lh~~~~IvHrDlKp~NIll~~~~~~~~~~~~  171 (362)
T d1q8ya_          92 KGPNGVHVVMVFEVLGENLLALIKKYEHRGIPLIYVKQISKQLLLGLDYMHRRCGIIHTDIKPENVLMEIVDSPENLIQI  171 (362)
T ss_dssp             EETTEEEEEEEECCCCEEHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHTTCEECSCCSGGGEEEEEEETTTTEEEE
T ss_pred             ccccceeeeeeecccccccccccccccccCCcHHHHHHHHHHHHHHHHHHhhhcCcccccCChhHeeeeccCccccccee
Confidence              4566777776643             3445555555555543              69999999997654      49


Q ss_pred             EEEecCCceecCCCCceeeeeeeecccc----cccccCCCCCCC
Q 047066          217 KVCDFGASKLVPIDETQLSTMVQGTLGY----YLHTSQGTLNKE  256 (256)
Q Consensus       217 ki~DFGla~~~~~~~~~~~~~~~Gt~~y----~~~~~~~t~ksD  256 (256)
                      |++|||.|......    ....+||+.|    ......++.++|
T Consensus       172 kl~dfg~s~~~~~~----~~~~~gt~~y~aPE~~~~~~~~~~~D  211 (362)
T d1q8ya_         172 KIADLGNACWYDEH----YTNSIQTREYRSPEVLLGAPWGCGAD  211 (362)
T ss_dssp             EECCCTTCEETTBC----CCSCCSCGGGCCHHHHHTCCCCTHHH
T ss_pred             eEeecccccccccc----cccccccccccChhhccccCCCcccc
Confidence            99999999875432    2335699999    555667777766

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.74  E-value=4.5e-18  Score=131.42  Aligned_cols=119  Identities=16%  Similarity=0.166  Sum_probs=86.1

Q ss_pred             cccceeeeeCceEEEEEEECCCcEEEEEEecccCh------------------hHHHHHHHHHHHHHhCCCCcccceeeE
Q 047066          107 AYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQ------------------SQIEQCINKVVVLSQINHRNVVGLLGC  168 (256)
Q Consensus       107 ~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~------------------~~~~~~~~E~~~l~~l~h~niv~l~~~  168 (256)
                      .+.+.||+|+||+||+|...+|+.||||.++....                  .......+|...+.++.|++++..+++
T Consensus         3 ~vg~~IG~G~~g~Vy~a~~~~g~~vAvKi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~v~~~~~~   82 (191)
T d1zara2           3 AIGKLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQGLAVPKVYAW   82 (191)
T ss_dssp             EEEEEEEECSSEEEEEEEETTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHTTTSSSCCEEEE
T ss_pred             hhCCEeeeCcceEEEEEECCCCCEEEEEEEecccchhhhhhhhhhhccHHHHHHHHHHHHHHHHHHHHccCCCcceEEEe
Confidence            46789999999999999988899999997643110                  112345678889999999999887755


Q ss_pred             EEECCEEEEEEecCCCCCC---CHHHHHHHHHHH-------------HhccCCCcEEEcCCCcEEEEecCCceecCCC
Q 047066          169 CLETEVPLLVNEFVKLPTI---SWEVRIRIAAET-------------AEDIKSINILLDDNYTTKVCDFGASKLVPID  230 (256)
Q Consensus       169 ~~~~~~~~lv~e~~~~~~l---~~~~~~~~~~~i-------------~rdlk~~NiLi~~~~~~ki~DFGla~~~~~~  230 (256)
                      .  .  .+++|||+++..+   +......++.|+             |+||||+|||++++ .++|+|||+|.....+
T Consensus        83 ~--~--~~lvme~~~~~~~~~l~~~~~~~i~~ql~~~l~~lH~~giiHrDiKP~NILv~~~-~~~liDFG~a~~~~~~  155 (191)
T d1zara2          83 E--G--NAVLMELIDAKELYRVRVENPDEVLDMILEEVAKFYHRGIVHGDLSQYNVLVSEE-GIWIIDFPQSVEVGEE  155 (191)
T ss_dssp             E--T--TEEEEECCCCEEGGGCCCSCHHHHHHHHHHHHHHHHHTTEECSCCSTTSEEEETT-EEEECCCTTCEETTST
T ss_pred             c--C--CEEEEEeeccccccchhhHHHHHHHHHHHHHHHHHhhCCEEEccCChhheeeeCC-CEEEEECCCcccCCCC
Confidence            3  2  3689999988443   222222233333             26999999999965 5899999999876543

>d1j7la_ d.144.1.6 (A:) Type IIIa 3',5"-aminoglycoside phosphotransferase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Type IIIa 3',5"-aminoglycoside phosphotransferase
species: Enterococcus faecalis [TaxId: 1351]

Probab=97.97  E-value=5.6e-05  Score=59.02  Aligned_cols=83  Identities=10%  Similarity=-0.034  Sum_probs=55.7

Q ss_pred             CCCcccceeeeeCceEEEEEEECCCcEEEEEEecccChhHHHHHHHHHHHHHhC-CCCcccceeeEEEECCEEEEEEecC
Q 047066          104 NNYAYDRMIGRGGYGTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQI-NHRNVVGLLGCCLETEVPLLVNEFV  182 (256)
Q Consensus       104 ~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~lv~e~~  182 (256)
                      +.|...+..+-++.+.||+... ++..+.+|............+.+|...+..+ .+-.+.+++.+....+..+++|++.
T Consensus        14 ~~~~~~~~~~G~s~~~v~rv~~-~~~~~vlk~~~~~~~~~~~~~~~E~~~l~~l~~~vpvP~vl~~~~~~~~~~lv~~~l   92 (263)
T d1j7la_          14 EKYRCVKDTEGMSPAKVYKLVG-ENENLYLKMTDSRYKGTTYDVEREKDMMLWLEGKLPVPKVLHFERHDGWSNLLMSEA   92 (263)
T ss_dssp             TTSEEEECSCCCSSSEEEEEEC-SSCEEEEEEECGGGTTSTTCHHHHHHHHHHHTTTSCCCCEEEEEEETTEEEEEEECC
T ss_pred             hceEEEEcCCCCCCCcEEEEEe-CCCeEEEEEcCCCcccchhhHHHHHHHHHHHhccCCCCcEEEEEecCCceEEEEEec
Confidence            4555444332233468998765 5566778876544333334567888888877 3545678888888889999999999


Q ss_pred             CCCCC
Q 047066          183 KLPTI  187 (256)
Q Consensus       183 ~~~~l  187 (256)
                      ++.++
T Consensus        93 ~G~~~   97 (263)
T d1j7la_          93 DGVLC   97 (263)
T ss_dssp             SSEEH
T ss_pred             ccccc
Confidence            88543

>d1nd4a_ d.144.1.6 (A:) Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase) {Bacteria (Klebsiella pneumoniae) [TaxId: 573]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase)
species: Bacteria (Klebsiella pneumoniae) [TaxId: 573]

Probab=97.49  E-value=0.00073  Score=52.11  Aligned_cols=74  Identities=15%  Similarity=0.027  Sum_probs=52.0

Q ss_pred             eeeeeCc-eEEEEEEECCCcEEEEEEecccChhHHHHHHHHHHHHHhCC--CCcccceeeEEEECCEEEEEEecCCCCCC
Q 047066          111 MIGRGGY-GTVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQIN--HRNVVGLLGCCLETEVPLLVNEFVKLPTI  187 (256)
Q Consensus       111 ~lg~G~~-g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~--h~niv~l~~~~~~~~~~~lv~e~~~~~~l  187 (256)
                      .+..|.. +.||+....++..+.+|.......   ..+..|...++.+.  .-.+.+++.+..+++..+++|+++++.++
T Consensus        17 ~~~~G~s~~~v~r~~~~~~~~~vlK~~~~~~~---~~l~~E~~~l~~L~~~gvpvP~v~~~~~~~~~~~~v~~~i~G~~~   93 (255)
T d1nd4a_          17 QQTIGCSDAAVFRLSAQGRPVLFVKTDLSGAL---NELQDEAARLSWLATTGVPCAAVLDVVTEAGRDWLLLGEVPGQDL   93 (255)
T ss_dssp             ECSCTTSSCEEEEEECTTSCCEEEEEECSCTT---SCHHHHHHHHHHHHTTTCCBCCEEEEEECSSCEEEEEECCSSEET
T ss_pred             EcCCcccCCeEEEEEeCCCCEEEEEeCCccCH---hHHHHHHHHHHHHHhcCCCCCceeeecccccceEEEEEeeecccc
Confidence            3444443 578988877777788887654332   34567888777763  34466788888888889999999988544

>d2pula1 d.144.1.6 (A:5-396) Methylthioribose kinase MtnK {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Methylthioribose kinase MtnK
species: Bacillus subtilis [TaxId: 1423]

Probab=97.28  E-value=0.00082  Score=55.75  Aligned_cols=73  Identities=22%  Similarity=0.231  Sum_probs=46.7

Q ss_pred             ceeeeeCceEEEEEEEC-CCcEEEEEEeccc-------ChhHHHHHHHHHHHHHhC-CC--CcccceeeEEEECCEEEEE
Q 047066          110 RMIGRGGYGTVFLGSLS-DNKAIAIKKSRIV-------YQSQIEQCINKVVVLSQI-NH--RNVVGLLGCCLETEVPLLV  178 (256)
Q Consensus       110 ~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~-------~~~~~~~~~~E~~~l~~l-~h--~niv~l~~~~~~~~~~~lv  178 (256)
                      +.+|.|..-.||+.... +++.+++|...+.       .+...++...|.+.|+.+ .+  ..+.+++.+  +++...++
T Consensus        32 ~eig~G~~N~vfrV~~~~~~~svivKqa~p~~r~~g~~~~~~~~R~~~E~~~L~~~~~~~p~~vP~v~~~--d~~~~~lv  109 (392)
T d2pula1          32 QEIGDGNLNYVFHIYDQEHDRALIIKQAVPYAKVVGESWPLTIDRARIESSALIRQGEHVPHLVPRVFYS--DTEMAVTV  109 (392)
T ss_dssp             EECCSSSSEEEEEEEC----CEEEEEEECCGGGC--CCCCCCTTHHHHHHHHHHHHHTTCGGGSCCEEEE--ETTTTEEE
T ss_pred             EEeCCCceEeEEEEEeCCCCeEEEEecCCchhcccCCCCCCCHHHHHHHHHHHHHhhhhCCCCcceEEEE--cCCCCEEE
Confidence            46898999999999864 4678999975431       111234456788888766 33  334455543  45566789


Q ss_pred             EecCCC
Q 047066          179 NEFVKL  184 (256)
Q Consensus       179 ~e~~~~  184 (256)
                      ||++.+
T Consensus       110 mE~L~~  115 (392)
T d2pula1         110 MEDLSH  115 (392)
T ss_dssp             ECCCTT
T ss_pred             EeccCC
Confidence            999976

>d1zyla1 d.144.1.6 (A:4-328) RdoA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: RdoA
species: Escherichia coli [TaxId: 562]

Probab=96.22  E-value=0.022  Score=45.40  Aligned_cols=66  Identities=14%  Similarity=-0.013  Sum_probs=44.0

Q ss_pred             EEEEEEECCCcEEEEEEecccChhHHHHHHHHHHHHHhCCCCcc--c---cee--eEEEECCEEEEEEecCCCC
Q 047066          119 TVFLGSLSDNKAIAIKKSRIVYQSQIEQCINKVVVLSQINHRNV--V---GLL--GCCLETEVPLLVNEFVKLP  185 (256)
Q Consensus       119 ~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~ni--v---~l~--~~~~~~~~~~lv~e~~~~~  185 (256)
                      .||++...+|..+++|..++... ..+++..|...+..|...++  +   ..-  ......+..+.+++++.|.
T Consensus        37 ~vy~v~~~dg~~~VlK~~rp~~~-s~~~i~~E~~~l~~L~~~gipv~~p~~~~g~~~~~~~~~~~~l~~~~~G~  109 (325)
T d1zyla1          37 RVYQFQDEDRRRFVVKFYRPERW-TADQILEEHQFALQLVNDEVPVAAPVAFNGQTLLNHQGFYFAVFPSVGGR  109 (325)
T ss_dssp             EEEEECCTTCCCEEEEEECTTTS-CHHHHHHHHHHHHHHHHTTCSBCCCCCBTTBSCEEETTEEEEEEECCCCE
T ss_pred             eeEEEEcCCCCEEEEEEeCCCCC-CHHHHHHHHHHHHHHHhcCCCCCCceecCCCeeeeeeeEEEEEEeecCCc
Confidence            69999988899999998765432 23567788888877632211  1   111  1334567788999999873

>d1nw1a_ d.144.1.8 (A:) Choline kinase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Choline kinase
domain: Choline kinase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=93.17  E-value=0.14  Score=41.57  Aligned_cols=76  Identities=13%  Similarity=0.178  Sum_probs=45.1

Q ss_pred             CCcccceeeeeCceEEEEEEECC--------CcEEEEEEecccChhHHHHHHHHHHHHHhCC-CCcccceeeEEEECCEE
Q 047066          105 NYAYDRMIGRGGYGTVFLGSLSD--------NKAIAIKKSRIVYQSQIEQCINKVVVLSQIN-HRNVVGLLGCCLETEVP  175 (256)
Q Consensus       105 ~~~~~~~lg~G~~g~V~~~~~~~--------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~l~~~~~~~~~~  175 (256)
                      ++++ +.|+-|-.=.+|++...+        ...+.++..- ..... -...+|..+++.+. +.-..++++++.  +  
T Consensus        44 ~l~v-~~l~GGltN~~y~v~~~~~~~~~~~~~~~vllRi~g-~~~~~-idr~~E~~i~~~ls~~gl~Pkll~~~~--~--  116 (395)
T d1nw1a_          44 HLRI-SRIKGGMSNMLFLCRLSEVYPPIRNEPNKVLLRVYF-NPETE-SHLVAESVIFTLLSERHLGPKLYGIFS--G--  116 (395)
T ss_dssp             GEEE-EEECCCTTEEEEEEEECTTSCCSSSCCSEEEEEEEC-SCCCH-HHHHHHHHHHHHHHHTTSSSCEEEEET--T--
T ss_pred             ceEE-EEcCCccccceEEEEeCCCCccccCCCCcEEEEecC-Ccchh-hHHHHHHHHHHHHHhCCCCCeEEEEcC--C--
Confidence            3444 356656556799988643        2345555443 22222 34567888888884 433456777664  2  


Q ss_pred             EEEEecCCCCCC
Q 047066          176 LLVNEFVKLPTI  187 (256)
Q Consensus       176 ~lv~e~~~~~~l  187 (256)
                      .+|+||+++..+
T Consensus       117 g~I~efi~g~~l  128 (395)
T d1nw1a_         117 GRLEEYIPSRPL  128 (395)
T ss_dssp             EEEECCCCEEEC
T ss_pred             ceEEEEeccccC
Confidence            578999987443

>d2ppqa1 d.144.1.6 (A:5-320) Homoserine kinase ThrB {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Homoserine kinase ThrB
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=88.14  E-value=4.3  Score=30.91  Aligned_cols=25  Identities=16%  Similarity=0.103  Sum_probs=22.6

Q ss_pred             ccCCCcEEEcCCCcEEEEecCCcee
Q 047066          202 DIKSINILLDDNYTTKVCDFGASKL  226 (256)
Q Consensus       202 dlk~~NiLi~~~~~~ki~DFGla~~  226 (256)
                      |+.+.|++++.+...-|.||+.|..
T Consensus       189 Dl~~dNvl~~~~~v~gvIDF~~~~~  213 (316)
T d2ppqa1         189 DLFQDNVFFLGDELSGLIDFYFACN  213 (316)
T ss_dssp             CCCGGGEEEETTEEEEECCCTTCEE
T ss_pred             CcchhhhhcccccceeEeccccccc
Confidence            9999999999988778999998864