Citrus Sinensis ID: 047072
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 570 | ||||||
| 449459056 | 992 | PREDICTED: histone-lysine N-methyltransf | 0.849 | 0.487 | 0.683 | 0.0 | |
| 359496368 | 1109 | PREDICTED: uncharacterized protein LOC10 | 0.984 | 0.505 | 0.613 | 0.0 | |
| 147799414 | 1126 | hypothetical protein VITISV_038835 [Viti | 0.984 | 0.498 | 0.615 | 0.0 | |
| 224126633 | 513 | SET domain protein [Populus trichocarpa] | 0.847 | 0.941 | 0.683 | 0.0 | |
| 357482201 | 1091 | Histone-lysine N-methyltransferase, H3 l | 0.847 | 0.442 | 0.671 | 0.0 | |
| 356497095 | 561 | PREDICTED: histone-lysine N-methyltransf | 0.871 | 0.885 | 0.650 | 0.0 | |
| 356540561 | 1086 | PREDICTED: uncharacterized protein LOC10 | 0.852 | 0.447 | 0.646 | 0.0 | |
| 255580797 | 455 | histone-lysine n-methyltransferase, suvh | 0.747 | 0.936 | 0.724 | 0.0 | |
| 297825147 | 808 | predicted protein [Arabidopsis lyrata su | 0.845 | 0.596 | 0.588 | 1e-171 | |
| 30681803 | 790 | histone-lysine N-methyltransferase, H3 l | 0.845 | 0.610 | 0.591 | 1e-169 |
| >gi|449459056|ref|XP_004147262.1| PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH6-like [Cucumis sativus] gi|449510495|ref|XP_004163682.1| PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH6-like [Cucumis sativus] | Back alignment and taxonomy information |
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Score = 743 bits (1918), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/509 (68%), Positives = 420/509 (82%), Gaps = 25/509 (4%)
Query: 86 GQRSRVRETFRLFQAVCRKLLHEKEA-KPDRQNSHKRVDYLVARILKDKKKYIPVHKKVI 144
G R+RVRET R+F AVCRKLL E+EA K + N+ +R+D++ A+ILKDK KY+ V K+++
Sbjct: 485 GTRTRVRETLRIFHAVCRKLLQEEEAGKKAQGNAPRRIDFIAAKILKDKGKYVNVCKQIL 544
Query: 145 GSVPGVEVGDEFQYRVELNMIGLHLQIQGGIDYVKHEGKINATSIVASGGYDDKLDNSDV 204
G VPGVEVGDEF+YR+ELN+IGLH Q QGGIDYVK KI ATSIVASGGY + LDNSDV
Sbjct: 545 GQVPGVEVGDEFRYRIELNIIGLHRQTQGGIDYVKCGQKILATSIVASGGYANNLDNSDV 604
Query: 205 LIYTGQGGNVMNGGKEPEDQKLERGNVALANNIHEQNPVRVIRGDTKAFEYRTCIYDGLY 264
LIYTGQGGN+M+ K+PEDQKLERGN+AL N+ E++PVRVIRG +++ + RT +YDGLY
Sbjct: 605 LIYTGQGGNLMHSDKKPEDQKLERGNLALKNSFDEKSPVRVIRG-SESSDGRTYVYDGLY 663
Query: 265 LVERYWQDVGSHGKLVYKFKLARIPGQPELSWKV-----------GLCVDDISQGKELIP 313
LVE++WQD+G HGKL++KF+L RIPGQPEL+WK GLCVDDISQGKE P
Sbjct: 664 LVEKWWQDMGPHGKLIFKFQLCRIPGQPELAWKEIKRSKKFKVREGLCVDDISQGKESTP 723
Query: 314 ICAVNTVDDEMPPSFKYITNIIYPDWCRPVPPKGCDCTNGCSKLEKCACVAKNGGEIPYN 373
ICAVN +D+E PP F YITN+IYPDWCRP+P KGC+CTNGCS E+C CV NGGEIP+N
Sbjct: 724 ICAVNIIDNEKPPPFNYITNMIYPDWCRPLPFKGCNCTNGCSDSERCYCVVLNGGEIPFN 783
Query: 374 HNRAIVQAKLLVYECGPSCKCPPSCYNRVSQQGIKVQLEIYKTEARGWGVRSLNSIAPGS 433
HN AIV+AK LVYECGPSCKCPPSC+NRVSQ GIK QLEI+KT++RGWGVRSLNSI GS
Sbjct: 784 HNGAIVEAKALVYECGPSCKCPPSCHNRVSQHGIKFQLEIFKTKSRGWGVRSLNSIPSGS 843
Query: 434 FIYEFVGELLEEKEAERRTSNDKYLFNIGNNYNDGSLWGGLSNVMPDAPSSSCGV----- 488
FI E++GELLE+KEA++RT ND+YLF+IGNNY+D SLW GLS ++PDA +++C +
Sbjct: 844 FICEYIGELLEDKEADQRTGNDEYLFDIGNNYSDNSLWDGLSTLLPDAQANACDIVEDGS 903
Query: 489 -------YGNVGRFVNHSCSPNLYAQNVLYDHEDKRMPHKMLFAAENISPLQELTYHYSY 541
YGN+GRF+NHSC+PNLYAQNVLYDHEDKR+PH M FAAENI PLQEL+YHY+Y
Sbjct: 904 FTIDAASYGNIGRFINHSCTPNLYAQNVLYDHEDKRIPHIMFFAAENIPPLQELSYHYNY 963
Query: 542 MIDQVYDSSGNIKKKSCFCGSSECTGWLY 570
M+DQV DS GNIKKK C CGS+ECTGW+Y
Sbjct: 964 MMDQVRDSEGNIKKKRCHCGSAECTGWMY 992
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Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359496368|ref|XP_003635220.1| PREDICTED: uncharacterized protein LOC100242100 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|147799414|emb|CAN76871.1| hypothetical protein VITISV_038835 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|224126633|ref|XP_002329603.1| SET domain protein [Populus trichocarpa] gi|222870312|gb|EEF07443.1| SET domain protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|357482201|ref|XP_003611386.1| Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH6 [Medicago truncatula] gi|355512721|gb|AES94344.1| Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH6 [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|356497095|ref|XP_003517399.1| PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH6-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|356540561|ref|XP_003538756.1| PREDICTED: uncharacterized protein LOC100776895 [Glycine max] | Back alignment and taxonomy information |
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| >gi|255580797|ref|XP_002531219.1| histone-lysine n-methyltransferase, suvh, putative [Ricinus communis] gi|223529179|gb|EEF31155.1| histone-lysine n-methyltransferase, suvh, putative [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|297825147|ref|XP_002880456.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297326295|gb|EFH56715.1| predicted protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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| >gi|30681803|ref|NP_850030.1| histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH6 [Arabidopsis thaliana] gi|42570881|ref|NP_973514.1| histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH6 [Arabidopsis thaliana] gi|30580521|sp|Q8VZ17.2|SUVH6_ARATH RecName: Full=Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH6; AltName: Full=Histone H3-K9 methyltransferase 6; Short=H3-K9-HMTase 6; AltName: Full=Protein SET DOMAIN GROUP 23; AltName: Full=Suppressor of variegation 3-9 homolog protein 6; Short=Su(var)3-9 homolog protein 6 gi|13517753|gb|AAK28971.1|AF344449_1 SUVH6 [Arabidopsis thaliana] gi|27754253|gb|AAO22580.1| putative mammalian MHC III region protein G9a [Arabidopsis thaliana] gi|330252253|gb|AEC07347.1| histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH6 [Arabidopsis thaliana] gi|330252254|gb|AEC07348.1| histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH6 [Arabidopsis thaliana] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 570 | ||||||
| TAIR|locus:2063384 | 794 | SUVH5 "SU(VAR)3-9 homolog 5" [ | 0.819 | 0.588 | 0.585 | 3.8e-156 | |
| TAIR|locus:2065988 | 790 | SUVH6 "SU(VAR)3-9 homolog 6" [ | 0.615 | 0.444 | 0.607 | 3.3e-118 | |
| TAIR|locus:2159133 | 624 | SUVH4 "SU(VAR)3-9 homolog 4" [ | 0.407 | 0.371 | 0.371 | 5.4e-80 | |
| TAIR|locus:2140827 | 650 | SUVH9 "SU(VAR)3-9 homolog 9" [ | 0.484 | 0.424 | 0.367 | 3.6e-78 | |
| TAIR|locus:2051083 | 651 | SUVH2 "SU(VAR)3-9 homolog 2" [ | 0.466 | 0.408 | 0.353 | 3.5e-75 | |
| TAIR|locus:2030953 | 693 | SUVH7 "SU(VAR)3-9 homolog 7" [ | 0.459 | 0.378 | 0.360 | 1e-65 | |
| TAIR|locus:2175289 | 670 | SUVH1 "SU(VAR)3-9 homolog 1" [ | 0.659 | 0.561 | 0.373 | 2e-63 | |
| TAIR|locus:2047266 | 755 | SDG21 "SET domain group 21" [A | 0.710 | 0.536 | 0.375 | 4.2e-63 | |
| TAIR|locus:2032592 | 669 | SUVH3 "SU(VAR)3-9 homolog 3" [ | 0.626 | 0.533 | 0.307 | 7.7e-48 | |
| TAIR|locus:2151997 | 328 | AT5G47150 [Arabidopsis thalian | 0.363 | 0.631 | 0.448 | 3.6e-41 |
| TAIR|locus:2063384 SUVH5 "SU(VAR)3-9 homolog 5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 1522 (540.8 bits), Expect = 3.8e-156, P = 3.8e-156
Identities = 295/504 (58%), Positives = 372/504 (73%)
Query: 88 RSRVRETFRLFQAVCRKLLHEKEAKP-DRQNSHKRVDYLVARILKDKKKYIPVHKKVIGS 146
R +V+ET RLF C+K++ E+EA+P R + +V ++ILK K K + ++IG+
Sbjct: 307 RYKVKETMRLFHETCKKIMQEEEARPRKRDGGNFKVVCEASKILKSKGKNLYSGTQIIGT 366
Query: 147 VPGVEVGDEFQYRVELNMIGLHLQIQGGIDYVKHEG-KINATSIVASGGYDDKLDNSDVL 205
VPGVEVGDEFQYR+ELN++G+H Q GIDY+K +G ++ ATSIV+SGGY+D LDNSDVL
Sbjct: 367 VPGVEVGDEFQYRMELNLLGIHRPSQSGIDYMKDDGGELVATSIVSSGGYNDVLDNSDVL 426
Query: 206 IYTGQGGNV--MNGGKEPEDQKLERGNVALANNIHEQNPVRVIRG--DT---KAFEYRTC 258
IYTGQGGNV + P+DQ+L GN+AL N+I+++NPVRVIRG +T + +
Sbjct: 427 IYTGQGGNVGKKKNNEPPKDQQLVTGNLALKNSINKKNPVRVIRGIKNTTLQSSVVAKNY 486
Query: 259 IYDGLYLVERYWQDVGSHGKLVYKFKLARIPGQPELSWKV-----------GLCVDDISQ 307
+YDGLYLVE YW++ GSHGKLV+KFKL RIPGQPEL WK GLC DI++
Sbjct: 487 VYDGLYLVEEYWEETGSHGKLVFKFKLRRIPGQPELPWKEVAKSKKSEFRDGLCNVDITE 546
Query: 308 GKELIPICAVNTVDDEMPPSFKYITNIIYPDWCRPVPPKGCDCTNGCSKLEKCACVAKNG 367
GKE +PICAVN +DDE PP F Y +IYPDWCRP+PPK C CTNGCSK + CAC+ KNG
Sbjct: 547 GKETLPICAVNNLDDEKPPPFIYTAKMIYPDWCRPIPPKSCGCTNGCSKSKNCACIVKNG 606
Query: 368 GEIPYNHNRAIVQAKLLVYECGPSCKCPPSCYNRVSQQGIKVQLEIYKTEARGWGVRSLN 427
G+IPY ++ AIV+ K LVYECGP CKCPPSC RVSQ GIK++LEI+KTE+RGWGVRSL
Sbjct: 607 GKIPY-YDGAIVEIKPLVYECGPHCKCPPSCNMRVSQHGIKIKLEIFKTESRGWGVRSLE 665
Query: 428 SIAPGSFIYEFVGELLEEKEAERRTSNDKYLFNIGNNYNDGSLWGGLSNVMPDAPSS-SC 486
SI GSFI E+ GELLE+K+AE T D+YLF++G+ D P + +
Sbjct: 666 SIPIGSFICEYAGELLEDKQAESLTGKDEYLFDLGDE---------------DDPFTINA 710
Query: 487 GVYGNVGRFVNHSCSPNLYAQNVLYDHEDKRMPHKMLFAAENISPLQELTYHYSYMIDQV 546
GN+GRF+NHSCSPNLYAQ+VLYDHE+ R+PH M FA +NI PLQEL+Y Y+Y IDQV
Sbjct: 711 AQKGNIGRFINHSCSPNLYAQDVLYDHEEIRIPHIMFFALDNIPPLQELSYDYNYKIDQV 770
Query: 547 YDSSGNIKKKSCFCGSSECTGWLY 570
YDS+GNIKKK C+CGS+EC+G LY
Sbjct: 771 YDSNGNIKKKFCYCGSAECSGRLY 794
|
|
| TAIR|locus:2065988 SUVH6 "SU(VAR)3-9 homolog 6" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2159133 SUVH4 "SU(VAR)3-9 homolog 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2140827 SUVH9 "SU(VAR)3-9 homolog 9" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2051083 SUVH2 "SU(VAR)3-9 homolog 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2030953 SUVH7 "SU(VAR)3-9 homolog 7" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2175289 SUVH1 "SU(VAR)3-9 homolog 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2047266 SDG21 "SET domain group 21" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2032592 SUVH3 "SU(VAR)3-9 homolog 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2151997 AT5G47150 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 570 | |||
| pfam02182 | 154 | pfam02182, YDG_SRA, YDG/SRA domain | 3e-73 | |
| smart00466 | 155 | smart00466, SRA, SET and RING finger associated do | 2e-65 | |
| pfam05033 | 103 | pfam05033, Pre-SET, Pre-SET motif | 6e-33 | |
| smart00317 | 124 | smart00317, SET, SET (Su(var)3-9, Enhancer-of-zest | 1e-27 | |
| smart00468 | 98 | smart00468, PreSET, N-terminal to some SET domains | 1e-26 | |
| pfam00856 | 113 | pfam00856, SET, SET domain | 1e-21 | |
| COG2940 | 480 | COG2940, COG2940, Proteins containing SET domain [ | 2e-11 |
| >gnl|CDD|216920 pfam02182, YDG_SRA, YDG/SRA domain | Back alignment and domain information |
|---|
Score = 230 bits (588), Expect = 3e-73
Identities = 93/154 (60%), Positives = 111/154 (72%), Gaps = 4/154 (2%)
Query: 142 KVIGSVPGVEVGDEFQYRVELNMIGLHLQIQGGIDYVKHEGKINATSIVASGGYDDKLDN 201
K IG VPGVEVGD F YRVEL ++GLH Q GID +K EG ATSIV+SGGY+D DN
Sbjct: 1 KRIGHVPGVEVGDIFFYRVELCVVGLHRPHQAGIDGMKSEGGTIATSIVSSGGYEDDEDN 60
Query: 202 SDVLIYTGQGGNVMNGGKEPEDQKLERGNVALANNIHEQNPVRVIRGDTKAFEYR----T 257
DVL+YTGQGGN ++G K+ EDQKLERGN+ALAN+ + NPVRVIRG+ +
Sbjct: 61 GDVLVYTGQGGNDLSGNKQSEDQKLERGNLALANSCRKGNPVRVIRGEKGPSSHAPKGGI 120
Query: 258 CIYDGLYLVERYWQDVGSHGKLVYKFKLARIPGQ 291
YDGLY VE+YW++ G G V+KFKL RIPGQ
Sbjct: 121 YRYDGLYRVEKYWREKGKSGFKVFKFKLVRIPGQ 154
|
The function of this domain is unknown, it contains a conserved motif YDG after which it has been named. Length = 154 |
| >gnl|CDD|197742 smart00466, SRA, SET and RING finger associated domain | Back alignment and domain information |
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| >gnl|CDD|218393 pfam05033, Pre-SET, Pre-SET motif | Back alignment and domain information |
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| >gnl|CDD|214614 smart00317, SET, SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain | Back alignment and domain information |
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| >gnl|CDD|128744 smart00468, PreSET, N-terminal to some SET domains | Back alignment and domain information |
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| >gnl|CDD|216155 pfam00856, SET, SET domain | Back alignment and domain information |
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| >gnl|CDD|225491 COG2940, COG2940, Proteins containing SET domain [General function prediction only] | Back alignment and domain information |
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Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 570 | |||
| smart00466 | 155 | SRA SET and RING finger associated domain. Domain | 100.0 | |
| PF02182 | 155 | SAD_SRA: SAD/SRA domain; InterPro: IPR003105 This | 100.0 | |
| KOG1082 | 364 | consensus Histone H3 (Lys9) methyltransferase SUV3 | 100.0 | |
| KOG4442 | 729 | consensus Clathrin coat binding protein/Huntingtin | 100.0 | |
| KOG1141 | 1262 | consensus Predicted histone methyl transferase [Ch | 100.0 | |
| KOG1080 | 1005 | consensus Histone H3 (Lys4) methyltransferase comp | 99.95 | |
| KOG1079 | 739 | consensus Transcriptional repressor EZH1 [Transcri | 99.93 | |
| smart00317 | 116 | SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) | 99.87 | |
| KOG1083 | 1306 | consensus Putative transcription factor ASH1/LIN-5 | 99.84 | |
| PF05033 | 103 | Pre-SET: Pre-SET motif; InterPro: IPR007728 This r | 99.83 | |
| smart00468 | 98 | PreSET N-terminal to some SET domains. A Cys-rich | 99.81 | |
| KOG1085 | 392 | consensus Predicted methyltransferase (contains a | 99.66 | |
| COG2940 | 480 | Proteins containing SET domain [General function p | 99.65 | |
| PF00856 | 162 | SET: SET domain; InterPro: IPR001214 The SET domai | 99.34 | |
| KOG1141 | 1262 | consensus Predicted histone methyl transferase [Ch | 99.09 | |
| KOG1081 | 463 | consensus Transcription factor NSD1 and related SE | 98.74 | |
| KOG2589 | 453 | consensus Histone tail methylase [Chromatin struct | 98.37 | |
| KOG2461 | 396 | consensus Transcription factor BLIMP-1/PRDI-BF1, c | 97.65 | |
| smart00508 | 26 | PostSET Cysteine-rich motif following a subset of | 96.41 | |
| COG3440 | 301 | Predicted restriction endonuclease [Defense mechan | 95.9 | |
| smart00570 | 51 | AWS associated with SET domains. subdomain of PRES | 95.08 | |
| KOG2084 | 482 | consensus Predicted histone tail methylase contain | 89.68 |
| >smart00466 SRA SET and RING finger associated domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-58 Score=432.15 Aligned_cols=150 Identities=57% Similarity=0.933 Sum_probs=141.2
Q ss_pred CceeecCCCccCCceechhhhhhhhcccCCccCCcceecC-CCceeEEEEEeeCCcCCCCCCCCeEEEeCCCCCCCCCCC
Q 047072 141 KKVIGSVPGVEVGDEFQYRVELNMIGLHLQIQGGIDYVKH-EGKINATSIVASGGYDDKLDNSDVLIYTGQGGNVMNGGK 219 (570)
Q Consensus 141 ~~~~G~vpGv~vGd~f~~r~e~~~~GlH~~~~~GI~~~~~-~g~~~A~SIV~Sggy~dd~d~gd~l~YtG~gg~~~~~~~ 219 (570)
+++||+||||+|||+|++|+||+++|||+++|+||||++. +|+++|+|||+||||+||+|+||+|+||||||++. .++
T Consensus 2 ~~~~G~vpGv~vGd~f~~R~el~~~GlH~~~~~GI~~~~~~~~~~~A~SIV~SggYedd~D~gd~liYtG~gg~~~-~~~ 80 (155)
T smart00466 2 KHIFGPVPGVEVGDIFFFRVELCLVGLHRPTQAGIDGLTADEGEPGATSVVSSGGYEDDTDDGDVLIYTGQGGRDM-THG 80 (155)
T ss_pred CceEeCCCCccCCCEEcchhHhhhhcccCcccCCcccccccCCCccEEEEEECCCccCcccCCCEEEEEccCCccC-CCC
Confidence 4689999999999999999999999999999999999984 57888999999999999999999999999999987 568
Q ss_pred CCcccccccccHHHHhhhhhCCCceEEeCCCCC---CcceeeeeeeeEEEEEEEeecCCCCeeEEeeeecccCCC
Q 047072 220 EPEDQKLERGNVALANNIHEQNPVRVIRGDTKA---FEYRTCIYDGLYLVERYWQDVGSHGKLVYKFKLARIPGQ 291 (570)
Q Consensus 220 ~~~dQ~l~~gN~AL~~s~~~~~pVRViRg~~~~---~~~~~y~YDGLY~V~~~w~e~g~~G~~v~kf~L~R~~GQ 291 (570)
|+.||+|++||+||++||++++|||||||.... .+.++|||||||+|++||.|+|++|+.||||+|+|+|||
T Consensus 81 ~~~dQkl~~gNlAL~~S~~~~~PVRViRg~~~~~~~~p~~gyrYDGLY~V~~~w~e~g~~G~~v~kfkL~R~~gQ 155 (155)
T smart00466 81 QPEDQKLERGNLALEASCRKGIPVRVVRGMKGYSKYAPGKGYIYDGLYRIVDYWREVGKSGFLVFKFKLVRIPGQ 155 (155)
T ss_pred CccccEecchhHHHHHHHhcCCceEEEccccccCCCCCCCeEEECcEEEEEEEEEecCCCCcEEEEEEEEeCCCC
Confidence 999999999999999999999999999997633 345899999999999999999999999999999999998
|
Domain of unknown function in SET domain containing proteins and in Deinococcus radiodurans DRA1533. Domain in SET domain containing proteins and in Deinococcus radiodurans DRA1533. |
| >PF02182 SAD_SRA: SAD/SRA domain; InterPro: IPR003105 This domain has been termed SRA-YDG, for SET and Ring finger Associated, and because of the conserved YDG motif within the domain | Back alignment and domain information |
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| >KOG1082 consensus Histone H3 (Lys9) methyltransferase SUV39H1/Clr4, required for transcriptional silencing [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
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| >KOG4442 consensus Clathrin coat binding protein/Huntingtin interacting protein HIP1, involved in regulation of endocytosis [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
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| >KOG1141 consensus Predicted histone methyl transferase [Chromatin structure and dynamics] | Back alignment and domain information |
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| >KOG1080 consensus Histone H3 (Lys4) methyltransferase complex, subunit SET1 and related methyltransferases [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
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| >KOG1079 consensus Transcriptional repressor EZH1 [Transcription] | Back alignment and domain information |
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| >smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain | Back alignment and domain information |
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| >KOG1083 consensus Putative transcription factor ASH1/LIN-59 [Transcription] | Back alignment and domain information |
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| >PF05033 Pre-SET: Pre-SET motif; InterPro: IPR007728 This region is found in a number of histone lysine methyltransferases (HMTase), N-terminal to the SET domain; it is generally described as the pre-SET domain | Back alignment and domain information |
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| >smart00468 PreSET N-terminal to some SET domains | Back alignment and domain information |
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| >KOG1085 consensus Predicted methyltransferase (contains a SET domain) [General function prediction only] | Back alignment and domain information |
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| >COG2940 Proteins containing SET domain [General function prediction only] | Back alignment and domain information |
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| >PF00856 SET: SET domain; InterPro: IPR001214 The SET domain appears generally as one part of a larger multidomain protein, and recently there were described three structures of very different proteins with distinct domain compositions: Neurospora crassa DIM-5, a member of the Su(var) family of HKMTs which methylate histone H3 on lysine 9,human SET7 (also called SET9), which methylates H3 on lysine 4 and garden pea Rubisco LSMT, an enzyme that does not modify histones, but instead methylates lysine 14 in the flexible tail of the large subunit of the enzyme Rubisco | Back alignment and domain information |
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| >KOG1141 consensus Predicted histone methyl transferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
| >KOG1081 consensus Transcription factor NSD1 and related SET domain proteins [Transcription] | Back alignment and domain information |
|---|
| >KOG2589 consensus Histone tail methylase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
| >KOG2461 consensus Transcription factor BLIMP-1/PRDI-BF1, contains C2H2-type Zn-finger and SET domains [Transcription] | Back alignment and domain information |
|---|
| >smart00508 PostSET Cysteine-rich motif following a subset of SET domains | Back alignment and domain information |
|---|
| >COG3440 Predicted restriction endonuclease [Defense mechanisms] | Back alignment and domain information |
|---|
| >smart00570 AWS associated with SET domains | Back alignment and domain information |
|---|
| >KOG2084 consensus Predicted histone tail methylase containing SET domain [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 570 | ||||
| 3q0c_X | 167 | Crystal Structure Of Suvh5 Sra-Fully Methylated Cg | 4e-52 | ||
| 3q0b_X | 167 | Crystal Structure Of Suvh5 Sra- Fully Methylated Cg | 1e-51 | ||
| 3hna_A | 287 | Crystal Structure Of Catalytic Domain Of Human Euch | 2e-34 | ||
| 2igq_A | 285 | Human Euchromatic Histone Methyltransferase 1 Lengt | 2e-34 | ||
| 3fpd_A | 261 | G9a-Like Protein Lysine Methyltransferase Inhibitio | 2e-34 | ||
| 3k5k_A | 283 | Discovery Of A 2,4-Diamino-7-Aminoalkoxy-Quinazolin | 1e-33 | ||
| 2o8j_A | 281 | Human Euchromatic Histone Methyltransferase 2 Lengt | 1e-33 | ||
| 4i51_A | 286 | Methyltransferase Domain Of Human Euchromatic Histo | 2e-33 | ||
| 2r3a_A | 300 | Methyltransferase Domain Of Human Suppressor Of Var | 2e-32 | ||
| 1mvh_A | 299 | Structure Of The Set Domain Histone Lysine Methyltr | 4e-32 | ||
| 3bo5_A | 290 | Crystal Structure Of Methyltransferase Domain Of Hu | 7e-27 | ||
| 1ml9_A | 302 | Structure Of The Neurospora Set Domain Protein Dim- | 7e-26 | ||
| 2zkd_A | 210 | Crystal Structure Of The Sra Domain Of Mouse Np95 I | 5e-18 | ||
| 2zo0_B | 212 | Mouse Np95 Sra Domain Dna Specific Complex 1 Length | 5e-18 | ||
| 3f8j_B | 212 | Mouse Uhrf1 Sra Domain Bound With Hemi-methylated C | 5e-18 | ||
| 3ooi_A | 232 | Crystal Structure Of Human Histone-Lysine N-Methylt | 2e-16 | ||
| 2pb7_A | 239 | Crystal Structure Of The Sra Domain Of The Human Uh | 5e-16 | ||
| 3bi7_A | 212 | Crystal Structure Of The Sra Domain Of E3 Ubiquitin | 6e-16 | ||
| 3clz_A | 212 | The Set And Ring Associated (Sra) Domain Of Uhrf1 B | 7e-16 | ||
| 3dwh_A | 208 | Structural And Functional Analysis Of Sra Domain Le | 9e-16 | ||
| 3oln_A | 231 | Crystal Structure Of The Sra Domain Of E3 Ubiquitin | 2e-15 | ||
| 4fmu_A | 278 | Crystal Structure Of Methyltransferase Domain Of Hu | 2e-15 | ||
| 3ope_A | 222 | Structural Basis Of Auto-Inhibitory Mechanism Of Hi | 8e-14 | ||
| 2w5y_A | 192 | Binary Complex Of The Mixed Lineage Leukaemia (Mll1 | 1e-10 | ||
| 4ij8_A | 165 | Crystal Structure Of The Complex Of Setd8 With Sam | 1e-04 | ||
| 3f9z_A | 166 | Structural Insights Into Lysine Multiple Methylatio | 1e-04 | ||
| 1zkk_A | 167 | Crystal Structure Of Hset8 In Ternary Complex With | 4e-04 | ||
| 2bqz_A | 161 | Crystal Structure Of A Ternary Complex Of The Human | 4e-04 |
| >pdb|3Q0C|X Chain X, Crystal Structure Of Suvh5 Sra-Fully Methylated Cg Dna Complex In Space Group P6122 Length = 167 | Back alignment and structure |
|
| >pdb|3Q0B|X Chain X, Crystal Structure Of Suvh5 Sra- Fully Methylated Cg Dna Complex In Space Group P42212 Length = 167 | Back alignment and structure |
| >pdb|3HNA|A Chain A, Crystal Structure Of Catalytic Domain Of Human Euchromatic Histone Methyltransferase 1 In Complex With Sah And Mono- Methylated H3k9 Peptide Length = 287 | Back alignment and structure |
| >pdb|2IGQ|A Chain A, Human Euchromatic Histone Methyltransferase 1 Length = 285 | Back alignment and structure |
| >pdb|3FPD|A Chain A, G9a-Like Protein Lysine Methyltransferase Inhibition By Bix- 01294 Length = 261 | Back alignment and structure |
| >pdb|3K5K|A Chain A, Discovery Of A 2,4-Diamino-7-Aminoalkoxy-Quinazoline As A Potent Inhibitor Of Histone Lysine Methyltransferase, G9a Length = 283 | Back alignment and structure |
| >pdb|2O8J|A Chain A, Human Euchromatic Histone Methyltransferase 2 Length = 281 | Back alignment and structure |
| >pdb|4I51|A Chain A, Methyltransferase Domain Of Human Euchromatic Histone Methyltransferase 1, Mutant Y1211a Length = 286 | Back alignment and structure |
| >pdb|2R3A|A Chain A, Methyltransferase Domain Of Human Suppressor Of Variegation 3-9 Homolog 2 Length = 300 | Back alignment and structure |
| >pdb|1MVH|A Chain A, Structure Of The Set Domain Histone Lysine Methyltransferase Clr4 Length = 299 | Back alignment and structure |
| >pdb|3BO5|A Chain A, Crystal Structure Of Methyltransferase Domain Of Human Histone-Lysine N-Methyltransferase Setmar Length = 290 | Back alignment and structure |
| >pdb|1ML9|A Chain A, Structure Of The Neurospora Set Domain Protein Dim-5, A Histone Lysine Methyltransferase Length = 302 | Back alignment and structure |
| >pdb|2ZKD|A Chain A, Crystal Structure Of The Sra Domain Of Mouse Np95 In Complex With Hemi-Methylated Cpg Dna Length = 210 | Back alignment and structure |
| >pdb|2ZO0|B Chain B, Mouse Np95 Sra Domain Dna Specific Complex 1 Length = 212 | Back alignment and structure |
| >pdb|3F8J|B Chain B, Mouse Uhrf1 Sra Domain Bound With Hemi-methylated Cpg, Crystal Structure In Space Group C222(1) Length = 212 | Back alignment and structure |
| >pdb|3OOI|A Chain A, Crystal Structure Of Human Histone-Lysine N-Methyltransferase Nsd1 Set Domain In Complex With S-Adenosyl-L-Methionine Length = 232 | Back alignment and structure |
| >pdb|2PB7|A Chain A, Crystal Structure Of The Sra Domain Of The Human Uhrf1 Protein Length = 239 | Back alignment and structure |
| >pdb|3BI7|A Chain A, Crystal Structure Of The Sra Domain Of E3 Ubiquitin-Protein Ligase Uhrf1 Length = 212 | Back alignment and structure |
| >pdb|3CLZ|A Chain A, The Set And Ring Associated (Sra) Domain Of Uhrf1 Bound To Methylated Dna Length = 212 | Back alignment and structure |
| >pdb|3DWH|A Chain A, Structural And Functional Analysis Of Sra Domain Length = 208 | Back alignment and structure |
| >pdb|3OLN|A Chain A, Crystal Structure Of The Sra Domain Of E3 Ubiquitin-Protein Ligase Uhrf2 Length = 231 | Back alignment and structure |
| >pdb|4FMU|A Chain A, Crystal Structure Of Methyltransferase Domain Of Human Set Domain- Containing Protein 2 Compound: Pr-Snf Length = 278 | Back alignment and structure |
| >pdb|3OPE|A Chain A, Structural Basis Of Auto-Inhibitory Mechanism Of Histone Methyltransferase Length = 222 | Back alignment and structure |
| >pdb|2W5Y|A Chain A, Binary Complex Of The Mixed Lineage Leukaemia (Mll1) Set Domain With The Cofactor Product S-Adenosylhomocysteine. Length = 192 | Back alignment and structure |
| >pdb|4IJ8|A Chain A, Crystal Structure Of The Complex Of Setd8 With Sam Length = 165 | Back alignment and structure |
| >pdb|3F9Z|A Chain A, Structural Insights Into Lysine Multiple Methylation By Set Domain Methyltransferases, Set8-Y245f H4-Lys20 ADOHCY Length = 166 | Back alignment and structure |
| >pdb|1ZKK|A Chain A, Crystal Structure Of Hset8 In Ternary Complex With H4 Peptide (16-24) And Adohcy Length = 167 | Back alignment and structure |
| >pdb|2BQZ|A Chain A, Crystal Structure Of A Ternary Complex Of The Human Histone Methyltransferase Pr-Set7 (Also Known As Set8) Length = 161 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 570 | |||
| 1mvh_A | 299 | Cryptic LOCI regulator 4; lysine methyltransferase | 7e-96 | |
| 3bo5_A | 290 | Histone-lysine N-methyltransferase setmar; SET dom | 7e-87 | |
| 1ml9_A | 302 | Histone H3 methyltransferase DIM-5; adoMet-depende | 8e-86 | |
| 3hna_A | 287 | Histone-lysine N-methyltransferase, H3 lysine-9 sp | 5e-85 | |
| 2r3a_A | 300 | Histone-lysine N-methyltransferase SUV39H2; histon | 1e-84 | |
| 3h6l_A | 278 | Histone-lysine N-methyltransferase SETD2; SET doma | 4e-67 | |
| 3ope_A | 222 | Probable histone-lysine N-methyltransferase ASH1L; | 9e-64 | |
| 3ooi_A | 232 | Histone-lysine N-methyltransferase, H3 lysine-36 l | 1e-63 | |
| 3q0b_X | 167 | Histone-lysine N-methyltransferase, H3 lysine-9 S | 3e-54 | |
| 2pb7_A | 239 | E3 ubiquitin-protein ligase UHRF1; beta barrel, NE | 1e-51 | |
| 3oln_A | 231 | E3 ubiquitin-protein ligase UHRF2; DNA-binding, me | 6e-50 | |
| 3fde_A | 212 | E3 ubiquitin-protein ligase UHRF1; SRA domain, bas | 4e-48 | |
| 2w5y_A | 192 | Histone-lysine N-methyltransferase HRX; transcript | 3e-36 | |
| 3f9x_A | 166 | Histone-lysine N-methyltransferase SETD8; methyltr | 1e-31 | |
| 3s8p_A | 273 | Histone-lysine N-methyltransferase SUV420H1; SET d | 4e-21 | |
| 1n3j_A | 119 | A612L, histone H3 lysine methyltransferase; beta b | 1e-20 | |
| 2f69_A | 261 | Histone-lysine N-methyltransferase, H3 lysine-4 sp | 2e-17 | |
| 3rq4_A | 247 | Histone-lysine N-methyltransferase SUV420H2; suppr | 5e-17 | |
| 2qpw_A | 149 | PR domain zinc finger protein 2; methyltransferase | 1e-12 | |
| 3ep0_A | 170 | PR domain zinc finger protein 12; PR domain-contai | 3e-11 | |
| 3db5_A | 151 | PR domain zinc finger protein 4; methyltransferase | 1e-09 | |
| 3dal_A | 196 | PR domain zinc finger protein 1; methyltransferase | 3e-09 | |
| 3ihx_A | 152 | PR domain zinc finger protein 10; PRDM10, methyltr | 2e-07 | |
| 3ray_A | 237 | PR domain-containing protein 11; structural genomi | 4e-05 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 9e-04 |
| >1mvh_A Cryptic LOCI regulator 4; lysine methyltransferase, CLR4, SET-domain; 2.30A {Schizosaccharomyces pombe} SCOP: b.85.7.1 PDB: 1mvx_A Length = 299 | Back alignment and structure |
|---|
Score = 293 bits (752), Expect = 7e-96
Identities = 89/292 (30%), Positives = 134/292 (45%), Gaps = 36/292 (12%)
Query: 303 DDISQGKELIPICAVNTVDDEMPPS--FKYITNIIYPDWCRPVPPK---GCDCTN----G 353
+ E + VN VDDE PS F++I+ P P GC+C++
Sbjct: 19 RKKLREIEGPEVTLVNEVDDEPCPSLDFQFISQYRLTQGVIPPDPNFQSGCNCSSLGGCD 78
Query: 354 CSKLEKCACVAK--NGGEIPYNH-NRAIVQAKLLVYECGPSCKCPPSCYNRVSQQGIKVQ 410
+ +C C+ Y+ R ++YEC C C C NRV Q+G +
Sbjct: 79 LNNPSRCECLDDLDEPTHFAYDAQGRVRADTGAVIYECNSFCSCSMECPNRVVQRGRTLP 138
Query: 411 LEIYKTEARGWGVRSLNSIAPGSFIYEFVGELLEEKEAERRTSN-----DKYLFNIGNNY 465
LEI+KT+ +GWGVRSL G+FI ++GE++ EA +R N YLF++
Sbjct: 139 LEIFKTKEKGWGVRSLRFAPAGTFITCYLGEVITSAEAAKRDKNYDDDGITYLFDLDMFD 198
Query: 466 NDGSLWGGLSNVMPDAPSSSCGVYGNVGRFVNHSCSPNLYAQNVLYDHEDKRMPHKMLFA 525
+ + DA YG+V RF NHSCSPN+ + + +H + + FA
Sbjct: 199 DASEY------TV-DA-----QNYGDVSRFFNHSCSPNIAIYSAVRNHGFRTIYDLAFFA 246
Query: 526 AENISPLQELTYHYSYMIDQVYDSSGNI-------KKKSCFCGSSECTGWLY 570
++I PL+ELT+ Y+ D S ++ C CGS+ C GWL+
Sbjct: 247 IKDIQPLEELTFDYAGAKDFSPVQSQKSQQNRISKLRRQCKCGSANCRGWLF 298
|
| >3bo5_A Histone-lysine N-methyltransferase setmar; SET domain, chromati regulator, DNA damage, DNA repair, DNA-binding, nucleus, ST genomics; HET: SAH; 1.59A {Homo sapiens} Length = 290 | Back alignment and structure |
|---|
| >1ml9_A Histone H3 methyltransferase DIM-5; adoMet-dependent methyltransferase histone H3 lysine- 9 methylation; 1.98A {Neurospora crassa} SCOP: b.85.7.1 PDB: 1peg_A* Length = 302 | Back alignment and structure |
|---|
| >3hna_A Histone-lysine N-methyltransferase, H3 lysine-9 specific 5; EHMT1, structural genomics, SGC, structural genomics consortium, alternative splicing, ANK repeat; HET: MLZ SAH; 1.50A {Homo sapiens} PDB: 2rfi_A* 2igq_A* 3mo0_A* 3mo2_A* 3mo5_A* 3sw9_A* 3swc_A* 3fpd_A* 3k5k_A* 3nni_A* 3rjw_A* 2o8j_A* Length = 287 | Back alignment and structure |
|---|
| >2r3a_A Histone-lysine N-methyltransferase SUV39H2; histone H3-K9 methyltransferase 2, H3 lysine-9 specific 2, alternative splicing, cell cycle; HET: SAM; 2.00A {Homo sapiens} Length = 300 | Back alignment and structure |
|---|
| >3ope_A Probable histone-lysine N-methyltransferase ASH1L; SET, nucleus; HET: SAM; 2.90A {Homo sapiens} Length = 222 | Back alignment and structure |
|---|
| >3ooi_A Histone-lysine N-methyltransferase, H3 lysine-36 lysine-20 specific; SET domain, S-adenosyl-L methionine; HET: SAM; 1.75A {Homo sapiens} Length = 232 | Back alignment and structure |
|---|
| >3q0b_X Histone-lysine N-methyltransferase, H3 lysine-9 S SUVH5; SRA, fully methylated CG, SUVH5, 5MC binding protein, fully methylated CG duplex DNA; HET: DNA 5CM; 2.20A {Arabidopsis thaliana} PDB: 3q0c_X* 3q0d_X* 3q0f_X* Length = 167 | Back alignment and structure |
|---|
| >2pb7_A E3 ubiquitin-protein ligase UHRF1; beta barrel, NEW fold; 1.90A {Homo sapiens} SCOP: b.122.1.12 Length = 239 | Back alignment and structure |
|---|
| >3oln_A E3 ubiquitin-protein ligase UHRF2; DNA-binding, metal-binding, nucleus, phosphorylation transcription, transcription regulation; 2.30A {Homo sapiens} Length = 231 | Back alignment and structure |
|---|
| >3fde_A E3 ubiquitin-protein ligase UHRF1; SRA domain, base flipping, DNA CPG methylation, cell cycle, developmental protein, DNA damage; HET: 5CM; 1.41A {Mus musculus} PDB: 2zo0_B* 2zo2_B* 3f8i_A* 2zo1_B* 3f8j_B* 2zkd_A* 2zke_A* 2zkf_A* 2zkg_A 3dwh_A 3bi7_A 3clz_A* Length = 212 | Back alignment and structure |
|---|
| >2w5y_A Histone-lysine N-methyltransferase HRX; transcription regulation, chromosomal rearrangement, protein lysine methyltransferase, proto-oncogene; HET: SAH; 2.00A {Homo sapiens} PDB: 2w5z_A* Length = 192 | Back alignment and structure |
|---|
| >3f9x_A Histone-lysine N-methyltransferase SETD8; methyltransferase, SET, lysine, alternative splicing, cell cycle, cell division, chromatin regulator, chromosomal protein, coiled coil; HET: MLY SAH; 1.25A {Homo sapiens} PDB: 3f9w_A* 3f9y_A* 3f9z_A* 1zkk_A* 2bqz_A* Length = 166 | Back alignment and structure |
|---|
| >3s8p_A Histone-lysine N-methyltransferase SUV420H1; SET domain, histone methyltransferase, transcription regulat histone lysine, SAM, methylation, nucleus; HET: MSE SAM; 1.85A {Homo sapiens} Length = 273 | Back alignment and structure |
|---|
| >1n3j_A A612L, histone H3 lysine methyltransferase; beta barrel, homodimer; NMR {Paramecium bursaria chlorella virus 1} SCOP: b.85.7.2 PDB: 2g46_A* 3kma_A 3kmj_A 3kmt_A* Length = 119 | Back alignment and structure |
|---|
| >2f69_A Histone-lysine N-methyltransferase, H3 lysine-4 specific SET7; SET domain, protein lysine methyltransferase, enzyme- peptide-adohcy complex; HET: MLZ SAH; 1.30A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 3m53_A* 3m55_A* 3m54_A* 3m56_A* 3m58_A* 3m57_A* 3m59_A* 3m5a_A* 1xqh_A* 4e47_A* 1n6a_A* 1o9s_A* 3cbp_A* 3cbm_A* 3cbo_A* 3os5_A* Length = 261 | Back alignment and structure |
|---|
| >3rq4_A Histone-lysine N-methyltransferase SUV420H2; suppressor, variegation 4-20 homolog 2, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.80A {Homo sapiens} Length = 247 | Back alignment and structure |
|---|
| >2qpw_A PR domain zinc finger protein 2; methyltransferase, activator, alternative initiation, alternative splicing, DNA-binding, metal-binding, nucleus; 1.79A {Homo sapiens} PDB: 2jv0_A* Length = 149 | Back alignment and structure |
|---|
| >3ep0_A PR domain zinc finger protein 12; PR domain-containing protein 12, structural genomics, structural genomics consortium, SGC, DNA-binding; 2.10A {Homo sapiens} Length = 170 | Back alignment and structure |
|---|
| >3db5_A PR domain zinc finger protein 4; methyltransferase, PRDM4, structural genomics, structural GE consortium, SGC, DNA-binding, metal-binding, nucleus; 2.15A {Homo sapiens} Length = 151 | Back alignment and structure |
|---|
| >3dal_A PR domain zinc finger protein 1; methyltransferase, PRDM1, structural genomics, structural genomics consortium, SGC, DNA-binding, metal-binding; 1.65A {Homo sapiens} Length = 196 | Back alignment and structure |
|---|
| >3ihx_A PR domain zinc finger protein 10; PRDM10, methyltransferase, structural genomics, structural G consortium, SGC, DNA-binding, metal-binding, nucleus; 2.50A {Homo sapiens} Length = 152 | Back alignment and structure |
|---|
| >3ray_A PR domain-containing protein 11; structural genomics consortium, SGC, histone methylation, Zn transcriptional regulation, chromatin, transcription; 1.73A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* Length = 429 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 570 | |||
| 3hna_A | 287 | Histone-lysine N-methyltransferase, H3 lysine-9 sp | 100.0 | |
| 3q0b_X | 167 | Histone-lysine N-methyltransferase, H3 lysine-9 S | 100.0 | |
| 1mvh_A | 299 | Cryptic LOCI regulator 4; lysine methyltransferase | 100.0 | |
| 1ml9_A | 302 | Histone H3 methyltransferase DIM-5; adoMet-depende | 100.0 | |
| 3fde_A | 212 | E3 ubiquitin-protein ligase UHRF1; SRA domain, bas | 100.0 | |
| 3bo5_A | 290 | Histone-lysine N-methyltransferase setmar; SET dom | 100.0 | |
| 2pb7_A | 239 | E3 ubiquitin-protein ligase UHRF1; beta barrel, NE | 100.0 | |
| 3oln_A | 231 | E3 ubiquitin-protein ligase UHRF2; DNA-binding, me | 100.0 | |
| 2r3a_A | 300 | Histone-lysine N-methyltransferase SUV39H2; histon | 100.0 | |
| 3h6l_A | 278 | Histone-lysine N-methyltransferase SETD2; SET doma | 100.0 | |
| 3ooi_A | 232 | Histone-lysine N-methyltransferase, H3 lysine-36 l | 100.0 | |
| 3ope_A | 222 | Probable histone-lysine N-methyltransferase ASH1L; | 100.0 | |
| 2w5y_A | 192 | Histone-lysine N-methyltransferase HRX; transcript | 100.0 | |
| 3f9x_A | 166 | Histone-lysine N-methyltransferase SETD8; methyltr | 99.97 | |
| 2f69_A | 261 | Histone-lysine N-methyltransferase, H3 lysine-4 sp | 99.94 | |
| 1n3j_A | 119 | A612L, histone H3 lysine methyltransferase; beta b | 99.93 | |
| 2qpw_A | 149 | PR domain zinc finger protein 2; methyltransferase | 99.92 | |
| 1h3i_A | 293 | Histone H3 lysine 4 specific methyltransferase; 2. | 99.92 | |
| 3s8p_A | 273 | Histone-lysine N-methyltransferase SUV420H1; SET d | 99.91 | |
| 3rq4_A | 247 | Histone-lysine N-methyltransferase SUV420H2; suppr | 99.85 | |
| 3ep0_A | 170 | PR domain zinc finger protein 12; PR domain-contai | 99.74 | |
| 3db5_A | 151 | PR domain zinc finger protein 4; methyltransferase | 99.72 | |
| 3dal_A | 196 | PR domain zinc finger protein 1; methyltransferase | 99.69 | |
| 3ray_A | 237 | PR domain-containing protein 11; structural genomi | 99.53 | |
| 3ihx_A | 152 | PR domain zinc finger protein 10; PRDM10, methyltr | 99.4 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.64 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 98.55 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 98.45 | |
| 3qxy_A | 449 | N-lysine methyltransferase SETD6; epigenetics, pro | 96.23 | |
| 2h21_A | 440 | Ribulose-1,5 bisphosphate carboxylase/oxygenase; S | 95.16 | |
| 3smt_A | 497 | Histone-lysine N-methyltransferase SETD3; histone | 94.56 |
| >3hna_A Histone-lysine N-methyltransferase, H3 lysine-9 specific 5; EHMT1, structural genomics, SGC, structural genomics consortium, alternative splicing, ANK repeat; HET: MLZ SAH; 1.50A {Homo sapiens} PDB: 2rfi_A* 2igq_A* 3mo0_A* 3mo2_A* 3mo5_A* 3sw9_A* 3swc_A* 4h4h_A* 4i51_A* 3fpd_A* 3k5k_A* 3nni_A* 3rjw_A* 2o8j_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-61 Score=497.11 Aligned_cols=251 Identities=36% Similarity=0.693 Sum_probs=218.5
Q ss_pred eeeeeeecccCCCCCcCceEEeccCCCC-CCCceEeeeeecCCCCCC----CCCCCCccCCCCCCCCCcccccccCCCcc
Q 047072 297 KVGLCVDDISQGKELIPICAVNTVDDEM-PPSFKYITNIIYPDWCRP----VPPKGCDCTNGCSKLEKCACVAKNGGEIP 371 (570)
Q Consensus 297 k~~~~~~DIS~G~E~~PI~~vN~VD~~~-pp~F~Yi~~~~~~~~~~~----~~~~gC~C~~~C~~~~~C~C~~~ngg~~~ 371 (570)
.++|++.|||+|+|++||+++|+||+++ |+.|+|++++++...... .+..||+|.++|.+ .+|+|.+.+. .++
T Consensus 27 ~~~~~~~Dis~G~E~~pi~~~N~vD~~~~p~~f~Y~~~~~~~~~~~~~~~~~~~~gC~C~~~C~~-~~C~C~~~~~-~~~ 104 (287)
T 3hna_A 27 VERIVSRDIARGYERIPIPCVNAVDSEPCPSNYKYVSQNCVTSPMNIDRNITHLQYCVCIDDCSS-SNCMCGQLSM-RCW 104 (287)
T ss_dssp CCEEEESCTTTTCSSSCCCEEESSSSCCCCCSSEECSSCEESSCCCCCCBGGGCCCCCCSSSSCS-TTCHHHHHTS-SCC
T ss_pred cCCEEhHhhCCCCCCCCEEEEeCCCCCCCCCCcEEccccccCCCccccccCCCCCCCcCcCCCCC-CCCcCcccCc-ccc
Confidence 4789999999999999999999999987 558999999876543211 23579999999987 5899998774 578
Q ss_pred ccCCcceec-----cceeeeccCCcCCCCCCCCCcccccCceeeEEEEEcCCCCceEeecCccCCCCeEEEEeeeeecHH
Q 047072 372 YNHNRAIVQ-----AKLLVYECGPSCKCPPSCYNRVSQQGIKVQLEIYKTEARGWGVRSLNSIAPGSFIYEFVGELLEEK 446 (570)
Q Consensus 372 y~~~g~l~~-----~~~~i~EC~~~C~C~~~C~NRv~Q~g~~~~LeVfrT~~kGwGVrA~~~I~~GtfI~EY~GEvi~~~ 446 (570)
|+.+|++.. ..++||||++.|+|+++|.||++|+|++.+|+||+|+.+||||||+++|++|+||+||+|||++.+
T Consensus 105 y~~~g~l~~~~~~~~~~~i~EC~~~C~C~~~C~Nr~~q~g~~~~l~v~~t~~kG~Gv~A~~~I~~G~~I~eY~Gevi~~~ 184 (287)
T 3hna_A 105 YDKDGRLLPEFNMAEPPLIFECNHACSCWRNCRNRVVQNGLRARLQLYRTRDMGWGVRSLQDIPPGTFVCEYVGELISDS 184 (287)
T ss_dssp BCTTSCBCTTCCSSSCCCEECCCTTSSSCTTCSSCSGGGCCCSCEEEEECSSSSEEEEESSCBCTTCEEEEECEEEEEHH
T ss_pred cCCCCcccccccccCCceEEecCCCCCCCCCCCCcccCcCCcccEEEEEcCCCceEEEeCcccCCCCEEEEeeeEEccHH
Confidence 999998764 467899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCeeEEecCCCCCCCCccCCCccccCCCCCCCCcccCCeecccccCCCCCceEEEEEEcCCCCccceEEEEEe
Q 047072 447 EAERRTSNDKYLFNIGNNYNDGSLWGGLSNVMPDAPSSSCGVYGNVGRFVNHSCSPNLYAQNVLYDHEDKRMPHKMLFAA 526 (570)
Q Consensus 447 e~~~r~~~d~Ylf~l~~~~~~~~~~~~~s~~~iDa~~~~~~~~GNvaRFINHSC~PN~~~~~V~~~~~d~~~prI~~FA~ 526 (570)
+++.|. .+.|+|+++.... ..+++|+ ..+||+||||||||+||+.++.|++.+.+...++|+|||+
T Consensus 185 e~~~r~-~~~Y~f~l~~~~~--------~~~~IDa-----~~~GN~aRFiNHSC~PN~~~~~v~~~~~d~~~~~i~~~A~ 250 (287)
T 3hna_A 185 EADVRE-EDSYLFDLDNKDG--------EVYCIDA-----RFYGNVSRFINHHCEPNLVPVRVFMAHQDLRFPRIAFFST 250 (287)
T ss_dssp HHHTCS-CCTTEEESCCSSS--------SCEEEEE-----EEEECGGGGCEECSSCSEEEEEEESSCCCTTCCEEEEEES
T ss_pred HHhhhc-ccceEEEeccCCC--------ceEEEec-----cccCCchheeeecCCCCceeEEEEEecCCCCceeEEEEEc
Confidence 998775 5789999875421 1246776 4799999999999999999999999988889999999999
Q ss_pred ecCCCCCeEEEecCCCcccccccCCCCcCeEEeeCCCCcccc
Q 047072 527 ENISPLQELTYHYSYMIDQVYDSSGNIKKKSCFCGSSECTGW 568 (570)
Q Consensus 527 rdI~~GEELT~DYg~~~~~~~~~~g~~k~~~C~CGS~~CRG~ 568 (570)
|||++||||||||+..++.... +.+.|+|||++|||+
T Consensus 251 RdI~~GEELT~dYg~~~~~~~~-----~~~~C~CGs~~CRgs 287 (287)
T 3hna_A 251 RLIEAGEQLGFDYGERFWDIKG-----KLFSCRCGSPKCRHS 287 (287)
T ss_dssp SCBCTTCBCEECCCHHHHHHHT-----TTCCCCCCCTTCSCC
T ss_pred ceeCCCCeEEEeCCCcccccCC-----CcCEeeCCCCCCCCC
Confidence 9999999999999987764321 358999999999985
|
| >3q0b_X Histone-lysine N-methyltransferase, H3 lysine-9 S SUVH5; SRA, fully methylated CG, SUVH5, 5MC binding protein, fully methylated CG duplex DNA; HET: DNA 5CM; 2.20A {Arabidopsis thaliana} PDB: 3q0c_X* 3q0d_X* 3q0f_X* | Back alignment and structure |
|---|
| >1mvh_A Cryptic LOCI regulator 4; lysine methyltransferase, CLR4, SET-domain; 2.30A {Schizosaccharomyces pombe} SCOP: b.85.7.1 PDB: 1mvx_A | Back alignment and structure |
|---|
| >1ml9_A Histone H3 methyltransferase DIM-5; adoMet-dependent methyltransferase histone H3 lysine- 9 methylation; 1.98A {Neurospora crassa} SCOP: b.85.7.1 PDB: 1peg_A* | Back alignment and structure |
|---|
| >3fde_A E3 ubiquitin-protein ligase UHRF1; SRA domain, base flipping, DNA CPG methylation, cell cycle, developmental protein, DNA damage; HET: 5CM; 1.41A {Mus musculus} SCOP: b.122.1.12 PDB: 2zo0_B* 2zo2_B* 3f8i_A* 2zo1_B* 3f8j_B* 2zkd_A* 2zke_A* 2zkf_A* 2zkg_A 3dwh_A 3bi7_A 3clz_A* | Back alignment and structure |
|---|
| >3bo5_A Histone-lysine N-methyltransferase setmar; SET domain, chromati regulator, DNA damage, DNA repair, DNA-binding, nucleus, ST genomics; HET: SAH; 1.59A {Homo sapiens} | Back alignment and structure |
|---|
| >2pb7_A E3 ubiquitin-protein ligase UHRF1; beta barrel, NEW fold; 1.90A {Homo sapiens} SCOP: b.122.1.12 | Back alignment and structure |
|---|
| >3oln_A E3 ubiquitin-protein ligase UHRF2; DNA-binding, metal-binding, nucleus, phosphorylation transcription, transcription regulation; 2.30A {Homo sapiens} SCOP: b.122.1.12 | Back alignment and structure |
|---|
| >2r3a_A Histone-lysine N-methyltransferase SUV39H2; histone H3-K9 methyltransferase 2, H3 lysine-9 specific 2, alternative splicing, cell cycle; HET: SAM; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
| >3ooi_A Histone-lysine N-methyltransferase, H3 lysine-36 lysine-20 specific; SET domain, S-adenosyl-L methionine; HET: SAM; 1.75A {Homo sapiens} | Back alignment and structure |
|---|
| >3ope_A Probable histone-lysine N-methyltransferase ASH1L; SET, nucleus; HET: SAM; 2.90A {Homo sapiens} | Back alignment and structure |
|---|
| >2w5y_A Histone-lysine N-methyltransferase HRX; transcription regulation, chromosomal rearrangement, protein lysine methyltransferase, proto-oncogene; HET: SAH; 2.00A {Homo sapiens} PDB: 2w5z_A* | Back alignment and structure |
|---|
| >3f9x_A Histone-lysine N-methyltransferase SETD8; methyltransferase, SET, lysine, alternative splicing, cell cycle, cell division, chromatin regulator, chromosomal protein, coiled coil; HET: MLY SAH; 1.25A {Homo sapiens} PDB: 3f9w_A* 3f9y_A* 3f9z_A* 1zkk_A* 4ij8_A* 2bqz_A* | Back alignment and structure |
|---|
| >2f69_A Histone-lysine N-methyltransferase, H3 lysine-4 specific SET7; SET domain, protein lysine methyltransferase, enzyme- peptide-adohcy complex; HET: MLZ SAH; 1.30A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 3m53_A* 3m55_A* 3m54_A* 3m56_A* 3m58_A* 3m57_A* 3m59_A* 3m5a_A* 1xqh_A* 4e47_A* 1n6a_A* 1o9s_A* 3cbp_A* 3cbm_A* 3cbo_A* 3os5_A* | Back alignment and structure |
|---|
| >1n3j_A A612L, histone H3 lysine methyltransferase; beta barrel, homodimer; NMR {Paramecium bursaria chlorella virus 1} SCOP: b.85.7.2 PDB: 2g46_A* 3kma_A 3kmj_A 3kmt_A* | Back alignment and structure |
|---|
| >2qpw_A PR domain zinc finger protein 2; methyltransferase, activator, alternative initiation, alternative splicing, DNA-binding, metal-binding, nucleus; 1.79A {Homo sapiens} PDB: 2jv0_A* | Back alignment and structure |
|---|
| >1h3i_A Histone H3 lysine 4 specific methyltransferase; 2.1A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 1mt6_A* 1n6c_A* 1muf_A | Back alignment and structure |
|---|
| >3s8p_A Histone-lysine N-methyltransferase SUV420H1; SET domain, histone methyltransferase, transcription regulat histone lysine, SAM, methylation, nucleus; HET: MSE SAM; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
| >3rq4_A Histone-lysine N-methyltransferase SUV420H2; suppressor, variegation 4-20 homolog 2, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
| >3ep0_A PR domain zinc finger protein 12; PR domain-containing protein 12, structural genomics, structural genomics consortium, SGC, DNA-binding; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
| >3db5_A PR domain zinc finger protein 4; methyltransferase, PRDM4, structural genomics, structural GE consortium, SGC, DNA-binding, metal-binding, nucleus; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
| >3dal_A PR domain zinc finger protein 1; methyltransferase, PRDM1, structural genomics, structural genomics consortium, SGC, DNA-binding, metal-binding; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
| >3ray_A PR domain-containing protein 11; structural genomics consortium, SGC, histone methylation, Zn transcriptional regulation, chromatin, transcription; 1.73A {Homo sapiens} | Back alignment and structure |
|---|
| >3ihx_A PR domain zinc finger protein 10; PRDM10, methyltransferase, structural genomics, structural G consortium, SGC, DNA-binding, metal-binding, nucleus; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
| >3qxy_A N-lysine methyltransferase SETD6; epigenetics, protein lysine methyltransferase, transferase, network VIA methyllysine signaling; HET: SAM; 2.09A {Homo sapiens} PDB: 3rc0_A* | Back alignment and structure |
|---|
| >2h21_A Ribulose-1,5 bisphosphate carboxylase/oxygenase; SET domain, protein lysine methyltransferase, transferase; HET: SAM; 2.45A {Pisum sativum} SCOP: a.166.1.1 b.85.7.3 PDB: 2h23_A* 2h2e_A* 2h2j_A* 1p0y_A* 1ozv_A* 1mlv_A* | Back alignment and structure |
|---|
| >3smt_A Histone-lysine N-methyltransferase SETD3; histone methyltransferase, histone modification, LYSI translational modification, structural genomics; HET: SAM; 2.04A {Homo sapiens} | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 570 | ||||
| d2zkda1 | 209 | b.122.1.12 (A:405-613) E3 ubiquitin-protein ligase | 4e-56 | |
| d1mvha_ | 269 | b.85.7.1 (A:) SET domain of Clr4 {Fission yeast (S | 1e-53 | |
| d1ml9a_ | 284 | b.85.7.1 (A:) Dim-5 {Fungus (Neurospora crassa) [T | 9e-53 | |
| d2f69a2 | 171 | b.85.7.1 (A:194-364) Histone H3 K4-specific methyl | 1e-24 | |
| d2g46a1 | 119 | b.85.7.2 (A:1-119) Viral histone H3 Lysine 27 Meth | 3e-12 |
| >d2zkda1 b.122.1.12 (A:405-613) E3 ubiquitin-protein ligase UHRF1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 209 | Back information, alignment and structure |
|---|
class: All beta proteins fold: PUA domain-like superfamily: PUA domain-like family: SRA domain-like domain: E3 ubiquitin-protein ligase UHRF1 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 185 bits (471), Expect = 4e-56
Identities = 61/182 (33%), Positives = 90/182 (49%), Gaps = 26/182 (14%)
Query: 141 KKVIGSVPGVEVGDEFQYRVELNMIGLHLQIQGGIDYVKHEGKINATSIVASGGYDDKLD 200
G +PGV VG +++RV+++ G+H GI ++G A S+V +GGY+D +D
Sbjct: 16 ANHFGPIPGVPVGTMWRFRVQVSESGVHRPHVAGIHGRSNDG---AYSLVLAGGYEDDVD 72
Query: 201 NSDVLIYTGQGGNVMNGGK----EPEDQKLERGNVALANNIH--------------EQNP 242
N + YTG GG ++G K + DQKL N ALA N H + P
Sbjct: 73 NGNYFTYTGSGGRDLSGNKRTAGQSSDQKLTNNNRALALNCHSPINEKGAEAEDWRQGKP 132
Query: 243 VRVIRG-----DTKAFEYRTCIYDGLYLVERYWQDVGSHGKLVYKFKLARIPGQPELSWK 297
VRV+R +K YDG+Y V +YW + G G LV+++ L R +PE +
Sbjct: 133 VRVVRNMKGGKHSKYAPAEGNRYDGIYKVVKYWPERGKSGFLVWRYLLRRDDTEPEPWTR 192
Query: 298 VG 299
G
Sbjct: 193 EG 194
|
| >d1mvha_ b.85.7.1 (A:) SET domain of Clr4 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 269 | Back information, alignment and structure |
|---|
| >d1ml9a_ b.85.7.1 (A:) Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]} Length = 284 | Back information, alignment and structure |
|---|
| >d2f69a2 b.85.7.1 (A:194-364) Histone H3 K4-specific methyltransferase SET7/9 catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 171 | Back information, alignment and structure |
|---|
| >d2g46a1 b.85.7.2 (A:1-119) Viral histone H3 Lysine 27 Methyltransferase {Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId: 10506]} Length = 119 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 570 | |||
| d2zkda1 | 209 | E3 ubiquitin-protein ligase UHRF1 {Mouse (Mus musc | 100.0 | |
| d1mvha_ | 269 | SET domain of Clr4 {Fission yeast (Schizosaccharom | 100.0 | |
| d1ml9a_ | 284 | Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]} | 100.0 | |
| d2f69a2 | 171 | Histone H3 K4-specific methyltransferase SET7/9 ca | 99.93 | |
| d2g46a1 | 119 | Viral histone H3 Lysine 27 Methyltransferase {Para | 99.88 | |
| d2h2ja2 | 261 | RuBisCo LSMT catalytic domain {Garden pea (Pisum s | 98.0 |
| >d2zkda1 b.122.1.12 (A:405-613) E3 ubiquitin-protein ligase UHRF1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: PUA domain-like superfamily: PUA domain-like family: SRA domain-like domain: E3 ubiquitin-protein ligase UHRF1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=3.6e-57 Score=436.52 Aligned_cols=158 Identities=38% Similarity=0.670 Sum_probs=144.1
Q ss_pred ccccCCCceeecCCCccCCceechhhhhhhhcccCCccCCcceecCCCceeEEEEEeeCCcCCCCCCCCeEEEeCCCCCC
Q 047072 135 KYIPVHKKVIGSVPGVEVGDEFQYRVELNMIGLHLQIQGGIDYVKHEGKINATSIVASGGYDDKLDNSDVLIYTGQGGNV 214 (570)
Q Consensus 135 ~~~~~~~~~~G~vpGv~vGd~f~~r~e~~~~GlH~~~~~GI~~~~~~g~~~A~SIV~Sggy~dd~d~gd~l~YtG~gg~~ 214 (570)
..+++.+ +||+||||+|||||++|+||+++|||+++|+||+|++.+| |+|||+||||+||.|++|+|+||||||++
T Consensus 11 ~~~~p~~-~~G~vpGv~VGd~F~~R~el~~~GlH~~~~aGI~g~~~~G---A~SIV~SGgYeDD~D~gd~liYTG~GG~d 86 (209)
T d2zkda1 11 CTIVPAN-HFGPIPGVPVGTMWRFRVQVSESGVHRPHVAGIHGRSNDG---AYSLVLAGGYEDDVDNGNYFTYTGSGGRD 86 (209)
T ss_dssp CCSSCTT-CCSCCTTCCTTCEESSHHHHHHTTSSCCSSCSEEEETTTE---EEEEEECSCSTTCEECSSEEEEECSCCBC
T ss_pred EEeCCCC-cccCCCCCCCCCEECCHHHHHHcCCCCCccCcEeecCCCc---eEEEEECCCccccccCCcEEEEECCCCcc
Confidence 3455555 5999999999999999999999999999999999999888 99999999999999999999999999999
Q ss_pred CCCCC----CCcccccccccHHHHhh--------------hhhCCCceEEeCCCC-----CCcceeeeeeeeEEEEEEEe
Q 047072 215 MNGGK----EPEDQKLERGNVALANN--------------IHEQNPVRVIRGDTK-----AFEYRTCIYDGLYLVERYWQ 271 (570)
Q Consensus 215 ~~~~~----~~~dQ~l~~gN~AL~~s--------------~~~~~pVRViRg~~~-----~~~~~~y~YDGLY~V~~~w~ 271 (570)
+++++ |+.||+|++||+||++| +++++|||||||... ..+.++|||||||+|++||.
T Consensus 87 ~~~~k~~~~q~~DQkl~~gNlAL~~Sc~~~~n~~~~~~~~~~~g~PVRVIRg~k~~~~~~~~p~~gYrYDGLY~V~~~w~ 166 (209)
T d2zkda1 87 LSGNKRTAGQSSDQKLTNNNRALALNCHSPINEKGAEAEDWRQGKPVRVVRNMKGGKHSKYAPAEGNRYDGIYKVVKYWP 166 (209)
T ss_dssp CTTTCSCCCBCSCCCSSHHHHHHHHTSSSCCCTTCEECTTGGGSCCEEEEEEGGGGGTCTTSCSSSEEEEEEEEEEEEEE
T ss_pred ccCCccccccccceeeccchHHHhhccccccccccchhhhhhcCCceEEEEeeccccCCCcCCCceEEeCcEEEEEEEEE
Confidence 87655 88999999999999999 678999999999532 23458999999999999999
Q ss_pred ecCCCCeeEEeeeecccCCCCCCcee
Q 047072 272 DVGSHGKLVYKFKLARIPGQPELSWK 297 (570)
Q Consensus 272 e~g~~G~~v~kf~L~R~~GQp~l~~k 297 (570)
|+|++||+||||+|+|+||||+ +|.
T Consensus 167 e~gk~G~~V~rF~L~R~~gQp~-p~~ 191 (209)
T d2zkda1 167 ERGKSGFLVWRYLLRRDDTEPE-PWT 191 (209)
T ss_dssp EECTTSSEEEEEEEEECCSSCC-TTS
T ss_pred ccCCCCcEEEEEEEEECCCCCC-Ccc
Confidence 9999999999999999999999 564
|
| >d1mvha_ b.85.7.1 (A:) SET domain of Clr4 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
| >d1ml9a_ b.85.7.1 (A:) Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]} | Back information, alignment and structure |
|---|
| >d2f69a2 b.85.7.1 (A:194-364) Histone H3 K4-specific methyltransferase SET7/9 catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2g46a1 b.85.7.2 (A:1-119) Viral histone H3 Lysine 27 Methyltransferase {Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId: 10506]} | Back information, alignment and structure |
|---|
| >d2h2ja2 b.85.7.3 (A:50-310) RuBisCo LSMT catalytic domain {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|