Citrus Sinensis ID: 047082


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260---
MEYPKNSCSLNSIFASPVCGKPTFSLGSDGNLVLAEADGTVVCQSNTANKGVVGFKLLPNGNMVLHDSKGNFIWQSFDCPTDTLLVGQSLLSVKENVSFVMEPKRFTLYYKGSNSPQPVLYDPSVQNLTFNSRPETDEAFAFKLTLDISDSGSDILARPKYNIRSSFLRLGMHGNLKIYTHYDKVDSQPTQLPERCSKLGVCDDNQCVACPTEKGLLGWSKEWVNHYMSKYTSGTAIKVEDCGRKCTSDCKCSGYFYHQETSK
ccccccEEEEEcccccccccccEEEEcccccEEEEcccccEEEEcccccccccEEEEEccccEEEEcccccEEEEcccccccccccccccccccccEEEEEccccEEEEEEcccccccEEcccccccEEEEEcccccccEEEEEEEEEcccccEEEEEEcccccEEEEEEEEEccEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccEEEEEcccccc
ccccccEEEEEEccccccccccEEEEEEccEEEEEcccccEEEEccccccccEHEEEcccccEEEEEccccEEEEEccccccccccccEcccccccEEEEccccccccEEEEccccEEEEEccccccEEEccccccccccEEEEEEEccccEEEEEEEEccccEEEEEEEcccccEEEEEEEccccccccccHHccccccccccccccccccccccccccccccccccEEEEccccccHHHHHHHHHHccccEEEEEcccccc
meypknscslnsifaspvcgkptfslgsdgnlvlaeadgtvvcqsntankgvvgfkllpngnmvlhdskgnfiwqsfdcptdtllvGQSLLSVKENvsfvmepkrftlyykgsnspqpvlydpsvqnltfnsrpeTDEAFAFKLTLdisdsgsdilarpkynirSSFLrlgmhgnlkiythydkvdsqptqlpercsklgvcddnqcvacptekgllgWSKEWVNHYMSkytsgtaikvedcgrkctsdckcsgyfyhqetsk
meypknscslnsifASPVCGKPTFSLGSDGNLVLAEADGTVVCQSNTANKGVVGFKLLPNGNMVLHDSKGNFIWQSFDCPTDTLLVGQSLLSVKENVSFVMEPKRFTLYYKGSNSPQPVLYDPSVQNLTFNSRPETDEAFAFKLTLDisdsgsdilarpkyniRSSFLRLGMHGNLKIYTHYDKVDSQPTQLPERCSKLGVCDDNQCVACPTEKGLLGWSKEWVNHYMSKYTSGTAIKVEDCGRKCtsdckcsgyfyhqetsk
MEYPKNSCSLNSIFASPVCGKPTFSLGSDGNLVLAEADGTVVCQSNTANKGVVGFKLLPNGNMVLHDSKGNFIWQSFDCPTDTLLVGQSLLSVKENVSFVMEPKRFTLYYKGSNSPQPVLYDPSVQNLTFNSRPETDEAFAFKLTLDISDSGSDILARPKYNIRSSFLRLGMHGNLKIYTHYDKVDSQPTQLPERCSKLGVCDDNQCVACPTEKGLLGWSKEWVNHYMSKYTSGTAIKVEDCGRKCTSDCKCSGYFYHQETSK
*********LNSIFASPVCGKPTFSLGSDGNLVLAEADGTVVCQSNTANKGVVGFKLLPNGNMVLHDSKGNFIWQSFDCPTDTLLVGQSLLSVKENVSFVMEPKRFTLYYKGS*****VLYDPSVQNLTF******DEAFAFKLTLDISDSGSDILARPKYNIRSSFLRLGMHGNLKIYTHYDKVDSQPTQLPERCSKLGVCDDNQCVACPTEKGLLGWSKEWVNHYMSKYTSGTAIKVEDCGRKCTSDCKCSGYFYH*****
MEYPKNSCSLNSIFASPVCGKPTFSLGSDGNLVLAEADGTVVCQSNTANKGVVGFKLLPNGNMVLHDSKGNFIWQSFDCPTDTLLVGQSLLSVKENVSFVMEPKRFTLYYKGSNSPQPVLYDPSVQNLTFNSRPETDEAFAFKLTLDISDSGSDILARPKYNIRSSFLRLGMHGNLKIYTHYDKVDSQPTQLPERCSKLGVCDDNQCVACPTEKGLLGWSKEWVNHYMSKYTSGTAIKVEDCGRKCTSDCKCSGYFYHQE***
MEYPKNSCSLNSIFASPVCGKPTFSLGSDGNLVLAEADGTVVCQSNTANKGVVGFKLLPNGNMVLHDSKGNFIWQSFDCPTDTLLVGQSLLSVKENVSFVMEPKRFTLYYKGSNSPQPVLYDPSVQNLTFNSRPETDEAFAFKLTLDISDSGSDILARPKYNIRSSFLRLGMHGNLKIYTHYDKVDSQPTQLPERCSKLGVCDDNQCVACPTEKGLLGWSKEWVNHYMSKYTSGTAIKVEDCGRKCTSDCKCSGYFYHQETSK
*EYPKNSCSLNSIFASPVCGKPTFSLGSDGNLVLAEADGTVVCQSNTANKGVVGFKLLPNGNMVLHDSKGNFIWQSFDCPTDTLLVGQSLLSVKENVSFVMEPKRFTLYYKGSNSPQPVLYDPSVQNLTFNSRPETDEAFAFKLTLDISDSGSDILARPKYNIRSSFLRLGMHGNLKIYTHYDKVDSQPTQLPERCSKLGVCDDNQCVACPTEKGLLGWSKEWVNHYMSKYTSGTAIKVEDCGRKCTSDCKCSGYFYHQET**
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MEYPKNSCSLNSIFASPVCGKPTFSLGSDGNLVLAEADGTVVCQSNTANKGVVGFKLLPNGNMVLHDSKGNFIWQSFDCPTDTLLVGQSLLSVKENVSFVMEPKRFTLYYKGSNSPQPVLYDPSVQNLTFNSRPETDEAFAFKLTLDISDSGSDILARPKYNIRSSFLRLGMHGNLKIYTHYDKVDSQPTQLPERCSKLGVCDDNQCVACPTEKGLLGWSKEWVNHYMSKYTSGTAIKVEDCGRKCTSDCKCSGYFYHQETSK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query263 2.2.26 [Sep-21-2011]
Q39688389 Epidermis-specific secret N/A no 0.787 0.532 0.460 3e-52
P17801 817 Putative receptor protein N/A no 0.882 0.283 0.252 4e-11
Q9FLV4 872 G-type lectin S-receptor- no no 0.935 0.282 0.247 4e-07
Q8RWZ5 821 G-type lectin S-receptor- no no 0.342 0.109 0.333 2e-06
Q9ZR08 852 G-type lectin S-receptor- no no 0.406 0.125 0.312 7e-06
Q39203 797 G-type lectin S-receptor- no no 0.722 0.238 0.236 1e-05
P22551444 S-locus-specific glycopro N/A no 0.813 0.481 0.25 2e-05
Q9S972 847 Receptor-like serine/thre no no 0.220 0.068 0.476 2e-05
P0DH86 853 G-type lectin S-receptor- no no 0.422 0.130 0.358 3e-05
Q39086 843 Receptor-like serine/thre no no 0.239 0.074 0.424 3e-05
>sp|Q39688|EP1G_DAUCA Epidermis-specific secreted glycoprotein EP1 OS=Daucus carota GN=EP1 PE=1 SV=1 Back     alignment and function desciption
 Score =  205 bits (521), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 123/267 (46%), Positives = 151/267 (56%), Gaps = 60/267 (22%)

Query: 15  ASPVCGKPTFSLGSDGNLVLAEADGTVVCQSNTANKGVVGFKLLPNGNMVLHDSKGNFIW 74
            +PV    T + G DGNLVLA ++G V  Q++TANKGVVG K+LPNGNMVL+DSKG F+W
Sbjct: 97  GNPVDENATLTFGPDGNLVLARSNGQVAWQTSTANKGVVGLKILPNGNMVLYDSKGKFLW 156

Query: 75  QSFDCPTDTLLVGQSL-----------LSVKENV----SFVMEPKRFTLYYKGSNSPQPV 119
           QSFD PTDTLLVGQSL            S  ENV    S VMEPK   LYYK + SP+P+
Sbjct: 157 QSFDTPTDTLLVGQSLKMGAVTKLVSRASPGENVNGPYSLVMEPKGLHLYYKPTTSPKPI 216

Query: 120 LY-----------DPSVQNLTFNSRPETDEAFAFKLTLDISDS----GSDILARPKYNIR 164
            Y           + S+QN+TF    E D+ FAF L+L    S    G+ IL R KYN  
Sbjct: 217 RYYSFSLFTKLNKNESLQNVTFEFENENDQGFAFLLSLKYGTSNSLGGASILNRIKYNTT 276

Query: 165 SSFLRLGMHGNLKIYTHYDKVD-----------------------------SQPTQLPER 195
            SFLRL + GN+KIYT+ DKVD                             S   QLP++
Sbjct: 277 LSFLRLEIDGNVKIYTYNDKVDYGAWEVTYTLFLKAPPPLFQVSLAATESESSECQLPKK 336

Query: 196 CSKLGVCDDNQCVACPTEKG-LLGWSK 221
           C   G+C+++QCV CPT  G +L WSK
Sbjct: 337 CGNFGLCEESQCVGCPTSSGPVLAWSK 363




May be involved in the limitation of water flow through the outer epidermal cell wall, either by direct modification of wall structure or as a signal instructing the protoplast to restrict water transport across the cell wall.
Daucus carota (taxid: 4039)
>sp|P17801|KPRO_MAIZE Putative receptor protein kinase ZmPK1 OS=Zea mays GN=PK1 PE=2 SV=2 Back     alignment and function description
>sp|Q9FLV4|Y5248_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase At5g24080 OS=Arabidopsis thaliana GN=At5g24080 PE=2 SV=1 Back     alignment and function description
>sp|Q8RWZ5|SD25_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 OS=Arabidopsis thaliana GN=SD25 PE=1 SV=1 Back     alignment and function description
>sp|Q9ZR08|Y4230_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 OS=Arabidopsis thaliana GN=At4g03230 PE=3 SV=3 Back     alignment and function description
>sp|Q39203|SD22_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase SD2-2 OS=Arabidopsis thaliana GN=SD22 PE=1 SV=1 Back     alignment and function description
>sp|P22551|SLSG0_BRAOA S-locus-specific glycoprotein OS=Brassica oleracea var. alboglabra GN=SLSG PE=2 SV=1 Back     alignment and function description
>sp|Q9S972|SD16_ARATH Receptor-like serine/threonine-protein kinase SD1-6 OS=Arabidopsis thaliana GN=SD16 PE=1 SV=2 Back     alignment and function description
>sp|P0DH86|SRK_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase SRK OS=Arabidopsis thaliana GN=SRK PE=2 SV=1 Back     alignment and function description
>sp|Q39086|SD17_ARATH Receptor-like serine/threonine-protein kinase SD1-7 OS=Arabidopsis thaliana GN=SD17 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query263
383932356 440 epidermis-specific secreted glycoprotein 0.942 0.563 0.506 2e-76
224117046 426 predicted protein [Populus trichocarpa] 0.946 0.584 0.503 4e-73
224117048 426 predicted protein [Populus trichocarpa] 0.946 0.584 0.503 7e-73
224114792 428 predicted protein [Populus trichocarpa] 0.946 0.581 0.508 4e-72
224114796 428 predicted protein [Populus trichocarpa] 0.946 0.581 0.508 8e-72
356549665 435 PREDICTED: epidermis-specific secreted g 0.942 0.570 0.488 6e-70
302142899 364 unnamed protein product [Vitis vinifera] 0.939 0.678 0.471 1e-69
449483158 440 PREDICTED: epidermis-specific secreted g 0.935 0.559 0.471 1e-68
359493596 434 PREDICTED: epidermis-specific secreted g 0.942 0.571 0.483 1e-68
224114788 426 predicted protein [Populus trichocarpa] 0.946 0.584 0.483 2e-68
>gi|383932356|gb|AFH57275.1| epidermis-specific secreted glycoprotein EP1-like protein [Gossypium hirsutum] Back     alignment and taxonomy information
 Score =  291 bits (745), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 160/316 (50%), Positives = 194/316 (61%), Gaps = 68/316 (21%)

Query: 15  ASPVCGKPTFSLGSDGNLVLAEADGTVVCQSNTANKGVVGFKLLPNGNMVLHDSKGNFIW 74
            +PV    TFSLG+DGNLVLA+ADG +  QSNTANK VVGF+LLPNGNMVLHDS G FIW
Sbjct: 99  GNPVRENATFSLGTDGNLVLADADGRIAWQSNTANKAVVGFQLLPNGNMVLHDSNGKFIW 158

Query: 75  QSFDCPTDTLLVGQSL-----------LSVKENV----SFVMEPKRFTLYYKGSNSPQPV 119
           QSFD PTDTLLVGQSL            S + NV    S VMEPK+  L YKG NS +P+
Sbjct: 159 QSFDHPTDTLLVGQSLRAGGATKLVSRASAQNNVNGAYSLVMEPKQLVLQYKGMNSSKPL 218

Query: 120 LY----------DPSVQNLTFNSRPETDEAFAFKLTLDIS------DSGSDILARPKYNI 163
           +Y          D ++Q +T N   ET++ FA+ + LD +       +G+ IL RPKYN 
Sbjct: 219 VYFKSSVWPNTQDGTLQTVTLNVE-ETNDGFAYDVLLDYTVANSSIGTGNLILTRPKYNS 277

Query: 164 RSSFLRLGMHGNLKIYTHYDKVDSQPT-----------------QLPERCSKLGVCDDNQ 206
             S LRLG+ GNL+++T+YDKVDSQ                   +LPERC   G+C++NQ
Sbjct: 278 TLSILRLGIDGNLRVFTYYDKVDSQAWEETFTLFSRDSVWGNECELPERCGNFGLCEENQ 337

Query: 207 CVACPTEKGLLGWSK-------------------EWVNHYMSKYTSGTAIKVEDCGRKCT 247
           CVACP+  GLLGWS+                   E VNH+MS+Y  G  IK  DCGRKCT
Sbjct: 338 CVACPSPNGLLGWSRNCQQKKVNCRPNDFSYYKLEGVNHFMSQYNEGEGIKESDCGRKCT 397

Query: 248 SDCKCSGYFYHQETSK 263
           SDC C GYFYH+ETSK
Sbjct: 398 SDCNCLGYFYHRETSK 413




Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224117046|ref|XP_002317461.1| predicted protein [Populus trichocarpa] gi|222860526|gb|EEE98073.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224117048|ref|XP_002317462.1| predicted protein [Populus trichocarpa] gi|222860527|gb|EEE98074.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224114792|ref|XP_002316858.1| predicted protein [Populus trichocarpa] gi|222859923|gb|EEE97470.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224114796|ref|XP_002316859.1| predicted protein [Populus trichocarpa] gi|222859924|gb|EEE97471.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356549665|ref|XP_003543212.1| PREDICTED: epidermis-specific secreted glycoprotein EP1-like [Glycine max] Back     alignment and taxonomy information
>gi|302142899|emb|CBI20194.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449483158|ref|XP_004156509.1| PREDICTED: epidermis-specific secreted glycoprotein EP1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|359493596|ref|XP_002283223.2| PREDICTED: epidermis-specific secreted glycoprotein EP1-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|224114788|ref|XP_002316857.1| predicted protein [Populus trichocarpa] gi|222859922|gb|EEE97469.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query263
TAIR|locus:2037508441 AT1G78850 [Arabidopsis thalian 0.403 0.240 0.553 9e-49
TAIR|locus:2037568443 AT1G78860 [Arabidopsis thalian 0.403 0.239 0.570 6.2e-48
TAIR|locus:2037548 455 AT1G78830 [Arabidopsis thalian 0.285 0.164 0.706 1.8e-43
TAIR|locus:2037563 455 AT1G78820 [Arabidopsis thalian 0.387 0.224 0.551 4e-42
UNIPROTKB|Q39688389 EP1 "Epidermis-specific secret 0.566 0.383 0.481 1.2e-39
TAIR|locus:4010713447423 AT1G16905 [Arabidopsis thalian 0.349 0.217 0.490 1.1e-25
TAIR|locus:2098237 476 AT3G51710 [Arabidopsis thalian 0.718 0.397 0.293 4.9e-10
TAIR|locus:2088619439 AT3G12000 [Arabidopsis thalian 0.220 0.132 0.531 5.5e-09
TAIR|locus:2116525 821 SD2-5 "S-domain-2 5" [Arabidop 0.342 0.109 0.333 8.3e-07
TAIR|locus:2141181 850 RK3 "receptor kinase 3" [Arabi 0.220 0.068 0.461 1.4e-06
TAIR|locus:2037508 AT1G78850 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 308 (113.5 bits), Expect = 9.0e-49, Sum P(3) = 9.0e-49
 Identities = 67/121 (55%), Positives = 79/121 (65%)

Query:    16 SPVCGKPTFSLGSDGNLVLAEADGTVVCQSNTANKGVVGFKLLPNGNMVLHDSKGNFIWQ 75
             SPV    T + G DGNLVLAEADG +V Q+NTANKG VG K+L NGNMV++DS G F+WQ
Sbjct:    97 SPVKENATLTFGEDGNLVLAEADGRLVWQTNTANKGAVGIKILENGNMVIYDSSGKFVWQ 156

Query:    76 SFDCPTDTLLVGQSLL-------------SVKEN--VSFVMEPKRFTLYYKGSNSPQPVL 120
             SFD PTDTLLVGQSL              SV  N   S VME K+  LYY  + +P+P+ 
Sbjct:   157 SFDSPTDTLLVGQSLKLNGRTKLVSRLSPSVNTNGPYSLVMEAKKLVLYYTTNKTPKPIA 216

Query:   121 Y 121
             Y
Sbjct:   217 Y 217


GO:0005886 "plasma membrane" evidence=ISM
GO:0030246 "carbohydrate binding" evidence=IEA;ISS
GO:0005618 "cell wall" evidence=IDA
GO:0005774 "vacuolar membrane" evidence=IDA
GO:0009505 "plant-type cell wall" evidence=IDA
GO:0048046 "apoplast" evidence=IDA
GO:0005829 "cytosol" evidence=IDA
GO:0005794 "Golgi apparatus" evidence=IDA
TAIR|locus:2037568 AT1G78860 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2037548 AT1G78830 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2037563 AT1G78820 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q39688 EP1 "Epidermis-specific secreted glycoprotein EP1" [Daucus carota (taxid:4039)] Back     alignment and assigned GO terms
TAIR|locus:4010713447 AT1G16905 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2098237 AT3G51710 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2088619 AT3G12000 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2116525 SD2-5 "S-domain-2 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2141181 RK3 "receptor kinase 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Fail to connect to STRING server


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query263
pfam01453109 pfam01453, B_lectin, D-mannose binding lectin 1e-21
cd00028116 cd00028, B_lectin, Bulb-type mannose-specific lect 2e-20
smart00108114 smart00108, B_lectin, Bulb-type mannose-specific l 1e-18
>gnl|CDD|216511 pfam01453, B_lectin, D-mannose binding lectin Back     alignment and domain information
 Score = 86.2 bits (214), Expect = 1e-21
 Identities = 39/80 (48%), Positives = 48/80 (60%), Gaps = 1/80 (1%)

Query: 20 GKPTFSLGSDGNLVLAEADGTVVCQSNTANKG-VVGFKLLPNGNMVLHDSKGNFIWQSFD 78
             T  L SDGNLVL + +G VV  SNT+ KG      L  +GN+VL+D+ G  +WQSFD
Sbjct: 17 SSYTLILQSDGNLVLYDGNGRVVWSSNTSGKGSGCVAVLQDDGNLVLYDNSGKVLWQSFD 76

Query: 79 CPTDTLLVGQSLLSVKENVS 98
           PTDTLL GQ   +V    S
Sbjct: 77 HPTDTLLPGQKDGNVVIGGS 96


These proteins include mannose-specific lectins from plants as well as bacteriocins from bacteria. Length = 109

>gnl|CDD|237995 cd00028, B_lectin, Bulb-type mannose-specific lectin Back     alignment and domain information
>gnl|CDD|214519 smart00108, B_lectin, Bulb-type mannose-specific lectin Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 263
PF01453114 B_lectin: D-mannose binding lectin; InterPro: IPR0 99.95
PF00954110 S_locus_glycop: S-locus glycoprotein family; Inter 99.85
cd00028116 B_lectin Bulb-type mannose-specific lectin. The do 99.84
smart00108114 B_lectin Bulb-type mannose-specific lectin. 99.81
smart00108114 B_lectin Bulb-type mannose-specific lectin. 98.39
cd00028116 B_lectin Bulb-type mannose-specific lectin. The do 98.38
PF0827666 PAN_2: PAN-like domain; InterPro: IPR013227 PAN do 98.36
PF01453114 B_lectin: D-mannose binding lectin; InterPro: IPR0 98.08
cd0109884 PAN_AP_plant Plant PAN/APPLE-like domain; present 98.06
cd0012980 PAN_APPLE PAN/APPLE-like domain; present in N-term 97.77
smart0047378 PAN_AP divergent subfamily of APPLE domains. Apple 96.55
cd0110073 APPLE_Factor_XI_like Subfamily of PAN/APPLE-like d 96.28
>PF01453 B_lectin: D-mannose binding lectin; InterPro: IPR001480 A bulb lectin super-family (Amaryllidaceae, Orchidaceae and Aliaceae) contains a ~115-residue-long domain whose overall three dimensional fold is very similar to that of [, ]: Dictyostelium discoideum comitin, an actin binding protein Curculigo latifolia curculin, a sweet tasting and taste-modifying protein This domain generally binds mannose, but in at least one protein, curculin, it is apparently devoid of mannose-binding activity Back     alignment and domain information
Probab=99.95  E-value=3e-29  Score=195.75  Aligned_cols=87  Identities=47%  Similarity=0.679  Sum_probs=67.0

Q ss_pred             CCcEEEEcCCCCCCC---CCCEEEEecCCcEEEEcCCCcEEEcC-CCCCCC--eeEEEEeeCCCeeEEcCCCceEeeecc
Q 047082            5 KNSCSLNSIFASPVC---GKPTFSLGSDGNLVLAEADGTVVCQS-NTANKG--VVGFKLLPNGNMVLHDSKGNFIWQSFD   78 (263)
Q Consensus         5 ~~~~vWvANr~~Pv~---~~~~l~l~~~G~L~l~~~~g~~~Wst-~~~~~~--~~~a~Lld~GNlvl~~~~~~~~WqSFd   78 (263)
                      ++++||+|||+.||.   +..+|.|+.||+|+|++..++.+|++ .+.+.+  ...|+|+|+|||||++..+.+||||||
T Consensus         1 ~~tvvW~an~~~p~~~~s~~~~L~l~~dGnLvl~~~~~~~iWss~~t~~~~~~~~~~~L~~~GNlvl~d~~~~~lW~Sf~   80 (114)
T PF01453_consen    1 PRTVVWVANRNSPLTSSSGNYTLILQSDGNLVLYDSNGSVIWSSNNTSGRGNSGCYLVLQDDGNLVLYDSSGNVLWQSFD   80 (114)
T ss_dssp             ---------TTEEEEECETTEEEEEETTSEEEEEETTTEEEEE--S-TTSS-SSEEEEEETTSEEEEEETTSEEEEESTT
T ss_pred             CcccccccccccccccccccccceECCCCeEEEEcCCCCEEEEecccCCccccCeEEEEeCCCCEEEEeecceEEEeecC
Confidence            468999999999994   34899999999999999998999999 666544  689999999999999988999999999


Q ss_pred             CCCceeccCcccC
Q 047082           79 CPTDTLLVGQSLL   91 (263)
Q Consensus        79 ~PTDTlLpGq~l~   91 (263)
                      |||||+||||+|+
T Consensus        81 ~ptdt~L~~q~l~   93 (114)
T PF01453_consen   81 YPTDTLLPGQKLG   93 (114)
T ss_dssp             SSS-EEEEEET--
T ss_pred             CCccEEEeccCcc
Confidence            9999999999986



Each bulb-type lectin domain consists of three sequential beta-sheet subdomains (I, II, III) that are inter-related by pseudo three-fold symmetry. The three subdomains are flat four-stranded, antiparrallel beta-sheets. Together they form a 12-stranded beta-barrel in which the barrel axis coincides with the pseudo 3-fold axis.; GO: 0005529 sugar binding; PDB: 3M7H_A 3M7J_B 3MEZ_D 1DLP_A 1BWU_D 1KJ1_A 1B2P_A 1XD6_A 2DPF_C 2D04_B ....

>PF00954 S_locus_glycop: S-locus glycoprotein family; InterPro: IPR000858 In Brassicaceae, self-incompatible plants have a self/non-self recognition system, which involves the inability of flowering plants to achieve self-fertilisation Back     alignment and domain information
>cd00028 B_lectin Bulb-type mannose-specific lectin Back     alignment and domain information
>smart00108 B_lectin Bulb-type mannose-specific lectin Back     alignment and domain information
>smart00108 B_lectin Bulb-type mannose-specific lectin Back     alignment and domain information
>cd00028 B_lectin Bulb-type mannose-specific lectin Back     alignment and domain information
>PF08276 PAN_2: PAN-like domain; InterPro: IPR013227 PAN domains have significant functional versatility fulfilling diverse biological functions by mediating protein-protein or protein-carbohydrate interactions [] Back     alignment and domain information
>PF01453 B_lectin: D-mannose binding lectin; InterPro: IPR001480 A bulb lectin super-family (Amaryllidaceae, Orchidaceae and Aliaceae) contains a ~115-residue-long domain whose overall three dimensional fold is very similar to that of [, ]: Dictyostelium discoideum comitin, an actin binding protein Curculigo latifolia curculin, a sweet tasting and taste-modifying protein This domain generally binds mannose, but in at least one protein, curculin, it is apparently devoid of mannose-binding activity Back     alignment and domain information
>cd01098 PAN_AP_plant Plant PAN/APPLE-like domain; present in plant S-receptor protein kinases and secreted glycoproteins Back     alignment and domain information
>cd00129 PAN_APPLE PAN/APPLE-like domain; present in N-terminal (N) domains of plasminogen/ hepatocyte growth factor proteins, plasma prekallikrein/coagulation factor XI and microneme antigen proteins, plant receptor-like protein kinases, and various nematode and leech anti-platelet proteins Back     alignment and domain information
>smart00473 PAN_AP divergent subfamily of APPLE domains Back     alignment and domain information
>cd01100 APPLE_Factor_XI_like Subfamily of PAN/APPLE-like domains; present in plasma prekallikrein/coagulation factor XI, microneme antigen proteins, and a few prokaryotic proteins Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query263
1b2p_A119 Protein (lectin); mannose-binding lectin, monocot, 2e-09
1b2p_A119 Protein (lectin); mannose-binding lectin, monocot, 2e-06
3a0c_A110 Mannose/sialic acid-binding lectin; beta-prism II, 6e-09
3a0c_A110 Mannose/sialic acid-binding lectin; beta-prism II, 8e-07
1xd5_A112 Gastrodianin-1, antifungal protein GAFP-1; monocot 5e-08
1xd5_A112 Gastrodianin-1, antifungal protein GAFP-1; monocot 2e-04
1dlp_A236 Lectin scafet precursor; two-domain lectin, beta p 6e-08
1dlp_A236 Lectin scafet precursor; two-domain lectin, beta p 5e-05
3r0e_B110 Lectin; carbohydrate binding, carbohydrate, sugar 6e-08
3r0e_B110 Lectin; carbohydrate binding, carbohydrate, sugar 2e-05
1kj1_A109 Lectin I, lecgna 1; BULB lectin, mannose, plant pr 1e-07
1kj1_A109 Lectin I, lecgna 1; BULB lectin, mannose, plant pr 2e-07
3mez_B113 Mannose-specific lectin 3 chain 2; heterotetramer, 2e-07
3mez_B113 Mannose-specific lectin 3 chain 2; heterotetramer, 5e-05
3m7h_A276 Putidacin L1; monocot mannose-binding lectin, bact 9e-07
3m7h_A276 Putidacin L1; monocot mannose-binding lectin, bact 4e-06
3r0e_A109 Lectin; carbohydrate binding, carbohydrate, sugar 3e-06
3r0e_A109 Lectin; carbohydrate binding, carbohydrate, sugar 6e-06
3dzw_A109 Agglutinin; lectin, mannobiose, mannose-alpha1, 3- 3e-06
3dzw_A109 Agglutinin; lectin, mannobiose, mannose-alpha1, 3- 2e-05
2dpf_A115 Curculin; sweet taste, taste modifying, plant prot 7e-06
2dpf_A115 Curculin; sweet taste, taste modifying, plant prot 5e-05
3mez_A111 Mannose-specific lectin 3 chain 1; heterotetramer, 2e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-04
>1b2p_A Protein (lectin); mannose-binding lectin, monocot, aglutinin, bluebell bulbs, carbohydrate interactions, sugar binding protein; 1.70A {Hyacinthoides hispanica} SCOP: b.78.1.1 Length = 119 Back     alignment and structure
 Score = 53.4 bits (128), Expect = 2e-09
 Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 4/72 (5%)

Query: 20  GKPTFSLGSDGNLVLAEADGTVVCQSNTANKGVVGF-KLLPNGNMVLHDSKGNFIWQS-- 76
               F + +D NLVL + +   +  +NT   G      L P+G +V+  ++   +WQS  
Sbjct: 30  HVYRFIMQTDCNLVLYD-NNNPIWATNTGGLGNGCRAVLQPDGVLVVITNENVTVWQSPV 88

Query: 77  FDCPTDTLLVGQ 88
                  +LV Q
Sbjct: 89  AGKAGHYVLVLQ 100


>1b2p_A Protein (lectin); mannose-binding lectin, monocot, aglutinin, bluebell bulbs, carbohydrate interactions, sugar binding protein; 1.70A {Hyacinthoides hispanica} SCOP: b.78.1.1 Length = 119 Back     alignment and structure
>3a0c_A Mannose/sialic acid-binding lectin; beta-prism II, sugar binding protein; 2.00A {Polygonatum cyrtonema} PDB: 3a0d_A* 3a0e_A* Length = 110 Back     alignment and structure
>3a0c_A Mannose/sialic acid-binding lectin; beta-prism II, sugar binding protein; 2.00A {Polygonatum cyrtonema} PDB: 3a0d_A* 3a0e_A* Length = 110 Back     alignment and structure
>1xd5_A Gastrodianin-1, antifungal protein GAFP-1; monocot mannose binding lectin, monomer, homogeneous beta- sheet; 2.00A {Gastrodia elata} SCOP: b.78.1.1 PDB: 1xd6_A Length = 112 Back     alignment and structure
>1xd5_A Gastrodianin-1, antifungal protein GAFP-1; monocot mannose binding lectin, monomer, homogeneous beta- sheet; 2.00A {Gastrodia elata} SCOP: b.78.1.1 PDB: 1xd6_A Length = 112 Back     alignment and structure
>1dlp_A Lectin scafet precursor; two-domain lectin, beta prism II fold, native, sugar binding protein; 3.30A {Hyacinthoides hispanica} SCOP: b.78.1.1 b.78.1.1 Length = 236 Back     alignment and structure
>1dlp_A Lectin scafet precursor; two-domain lectin, beta prism II fold, native, sugar binding protein; 3.30A {Hyacinthoides hispanica} SCOP: b.78.1.1 b.78.1.1 Length = 236 Back     alignment and structure
>3r0e_B Lectin; carbohydrate binding, carbohydrate, sugar binding protein; 2.40A {Remusatia vivipara} Length = 110 Back     alignment and structure
>3r0e_B Lectin; carbohydrate binding, carbohydrate, sugar binding protein; 2.40A {Remusatia vivipara} Length = 110 Back     alignment and structure
>1kj1_A Lectin I, lecgna 1; BULB lectin, mannose, plant protein; HET: MAN; 2.20A {Allium sativum} SCOP: b.78.1.1 PDB: 1bwu_P* 1kj1_D* 1bwu_Q* 1bwu_A* 1bwu_D* Length = 109 Back     alignment and structure
>1kj1_A Lectin I, lecgna 1; BULB lectin, mannose, plant protein; HET: MAN; 2.20A {Allium sativum} SCOP: b.78.1.1 PDB: 1bwu_P* 1kj1_D* 1bwu_Q* 1bwu_A* 1bwu_D* Length = 109 Back     alignment and structure
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} Length = 113 Back     alignment and structure
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} Length = 113 Back     alignment and structure
>3m7h_A Putidacin L1; monocot mannose-binding lectin, bacteriocin, LLPA, pseudomon bacterial toxin, siras, antimicrobial protein; 2.20A {Pseudomonas SP} PDB: 3m7j_A* Length = 276 Back     alignment and structure
>3m7h_A Putidacin L1; monocot mannose-binding lectin, bacteriocin, LLPA, pseudomon bacterial toxin, siras, antimicrobial protein; 2.20A {Pseudomonas SP} PDB: 3m7j_A* Length = 276 Back     alignment and structure
>3r0e_A Lectin; carbohydrate binding, carbohydrate, sugar binding protein; 2.40A {Remusatia vivipara} Length = 109 Back     alignment and structure
>3r0e_A Lectin; carbohydrate binding, carbohydrate, sugar binding protein; 2.40A {Remusatia vivipara} Length = 109 Back     alignment and structure
>3dzw_A Agglutinin; lectin, mannobiose, mannose-alpha1, 3-mannose, D sugar binding protein; HET: MAN; 1.70A {Narcissus pseudonarcissus} PDB: 1npl_A* 1jpc_A* 1msa_A* 1niv_A* Length = 109 Back     alignment and structure
>3dzw_A Agglutinin; lectin, mannobiose, mannose-alpha1, 3-mannose, D sugar binding protein; HET: MAN; 1.70A {Narcissus pseudonarcissus} PDB: 1npl_A* 1jpc_A* 1msa_A* 1niv_A* Length = 109 Back     alignment and structure
>2dpf_A Curculin; sweet taste, taste modifying, plant protein; 1.50A {Curculigo latifolia} PDB: 2d04_B* 2d04_A* Length = 115 Back     alignment and structure
>2dpf_A Curculin; sweet taste, taste modifying, plant protein; 1.50A {Curculigo latifolia} PDB: 2d04_B* 2d04_A* Length = 115 Back     alignment and structure
>3mez_A Mannose-specific lectin 3 chain 1; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} Length = 111 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query263
3m7h_A276 Putidacin L1; monocot mannose-binding lectin, bact 99.97
1dlp_A236 Lectin scafet precursor; two-domain lectin, beta p 99.95
4h3o_A105 Lectin; cadmium, plant protein; 2.17A {Allium sati 99.73
3a0c_A110 Mannose/sialic acid-binding lectin; beta-prism II, 99.62
1xd5_A112 Gastrodianin-1, antifungal protein GAFP-1; monocot 99.61
2dpf_A115 Curculin; sweet taste, taste modifying, plant prot 99.57
3a0c_A110 Mannose/sialic acid-binding lectin; beta-prism II, 99.54
1xd5_A112 Gastrodianin-1, antifungal protein GAFP-1; monocot 99.52
3dzw_A109 Agglutinin; lectin, mannobiose, mannose-alpha1, 3- 99.49
2dpf_A115 Curculin; sweet taste, taste modifying, plant prot 99.48
1b2p_A119 Protein (lectin); mannose-binding lectin, monocot, 99.47
1b2p_A119 Protein (lectin); mannose-binding lectin, monocot, 99.45
3mez_B113 Mannose-specific lectin 3 chain 2; heterotetramer, 99.43
3r0e_B110 Lectin; carbohydrate binding, carbohydrate, sugar 99.35
3r0e_A109 Lectin; carbohydrate binding, carbohydrate, sugar 99.3
3mez_B113 Mannose-specific lectin 3 chain 2; heterotetramer, 99.2
3mez_A111 Mannose-specific lectin 3 chain 1; heterotetramer, 99.17
3mez_A111 Mannose-specific lectin 3 chain 1; heterotetramer, 99.15
3m7h_A276 Putidacin L1; monocot mannose-binding lectin, bact 99.07
3dzw_A109 Agglutinin; lectin, mannobiose, mannose-alpha1, 3- 99.05
3r0e_A109 Lectin; carbohydrate binding, carbohydrate, sugar 99.02
3r0e_B110 Lectin; carbohydrate binding, carbohydrate, sugar 98.97
4h3o_A105 Lectin; cadmium, plant protein; 2.17A {Allium sati 98.9
1dlp_A236 Lectin scafet precursor; two-domain lectin, beta p 98.51
2ll3_A82 Micronemal protein 4; cell adhesion; NMR {Toxoplas 86.07
3no2_A276 Uncharacterized protein; six-bladed beta-propeller 84.83
>3m7h_A Putidacin L1; monocot mannose-binding lectin, bacteriocin, LLPA, pseudomon bacterial toxin, siras, antimicrobial protein; 2.20A {Pseudomonas SP} PDB: 3m7j_A* Back     alignment and structure
Probab=99.97  E-value=5e-32  Score=240.59  Aligned_cols=166  Identities=13%  Similarity=0.064  Sum_probs=119.8

Q ss_pred             CCCcEEEEcCCCCCCCC-----CCEEEEecCCcEEE--EcCCCcEEEcCCCCC------CCeeEEEEeeCCCeeEEcCCC
Q 047082            4 PKNSCSLNSIFASPVCG-----KPTFSLGSDGNLVL--AEADGTVVCQSNTAN------KGVVGFKLLPNGNMVLHDSKG   70 (263)
Q Consensus         4 ~~~~~vWvANr~~Pv~~-----~~~l~l~~~G~L~l--~~~~g~~~Wst~~~~------~~~~~a~Lld~GNlvl~~~~~   70 (263)
                      +.+ +||+|||++||.+     +++|+|+.+|+|+|  .|+.|++||+++++.      ..++.|+|+|+|||||++  +
T Consensus        51 ~~~-vvW~Anr~~p~~~~~~~~~~~l~l~~~G~Lvl~~~~~~~~~vWst~~~~~~~~~~~~~~~a~L~d~GNlVl~~--~  127 (276)
T 3m7h_A           51 NGA-TVWVANEQQPFSSTIPLRNKKAPLAFYVQYGAFLDDYSRRRVWLTDNSTFTSNDQWNRTHLVLQDDGNIVLVD--S  127 (276)
T ss_dssp             TTE-EEEECSTTSTTEEEEECCCTTCCSEEEESSSEEEEEGGGTEEEEECCCCCCCTTHHHHEEEEECTTSCEEEEE--E
T ss_pred             CCC-eEEECCCCCCcCCcccccceEEEEeCCCcEEEEEeCCCCCEEEEeCCCcccccccCCceEEEEeCCCCEEecC--C
Confidence            455 9999999999987     68999999999999  788889999999864      235789999999999998  7


Q ss_pred             ceEeeeccCCCceeccCcccC----------CCCCCe----EEEEecCCceEEEecCCCCCceeecCCCCceeeecccCC
Q 047082           71 NFIWQSFDCPTDTLLVGQSLL----------SVKENV----SFVMEPKRFTLYYKGSNSPQPVLYDPSVQNLTFNSRPET  136 (263)
Q Consensus        71 ~~~WqSFd~PTDTlLpGq~l~----------S~~dps----sl~l~~~~~~~~~~~~~~~~~~~~sg~w~~~~f~~~p~~  136 (263)
                      .+||||  ||||||||||||+          |..||+    +|+|++++- ++ +..++.++||.+|.|+......  .+
T Consensus       128 ~~lWqS--~ptdtlLpg~~~~~~l~~g~~L~S~~dps~G~fsl~l~~dGn-lv-Ly~~~~~~yW~Sgt~~~~~~~l--~l  201 (276)
T 3m7h_A          128 LALWNG--TPAIPLVPGAIDSLLLAPGSELVQGVVYGAGASKLVFQGDGN-LV-AYGPNGAATWNAGTQGKGAVRA--VF  201 (276)
T ss_dssp             EEEEES--CTTSCCCCSCTTCEEECSSEEECTTCEEEETTEEEEECTTSC-EE-EECTTSSEEEECCCTTTTCCEE--EE
T ss_pred             ceeeCc--ccccccccccccccccccCcccccCCCCCCceEEEeecCCce-EE-EEeCCCeEEEECCCCCCccEEE--EE
Confidence            899999  9999999999944          667777    888887762 22 2233345788888886421100  11


Q ss_pred             CccceeEEEEEecCCCceEEEeecCCCceEEEEEeecCCEEEEEe
Q 047082          137 DEAFAFKLTLDISDSGSDILARPKYNIRSSFLRLGMHGNLKIYTH  181 (263)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~Ld~dG~lr~y~~  181 (263)
                      ...  ..+.+. ..++..+.+........+|++|+.||+|++|.|
T Consensus       202 ~~d--GnLvl~-d~~~~~vWsS~t~~~~~~rl~Ld~dGnLvly~~  243 (276)
T 3m7h_A          202 QGD--GNLVVY-GAGNAVLWHSHTGGHASAVLRLQANGSIAILDE  243 (276)
T ss_dssp             CTT--SCEEEE-CTTSCEEEECSCTTCTTCEEEECTTSCEEEEEE
T ss_pred             cCC--CeEEEE-eCCCcEEEEecCCCCCCEEEEEcCCccEEEEcC
Confidence            110  113332 222333333333223357999999999999998



>1dlp_A Lectin scafet precursor; two-domain lectin, beta prism II fold, native, sugar binding protein; 3.30A {Hyacinthoides hispanica} SCOP: b.78.1.1 b.78.1.1 Back     alignment and structure
>4h3o_A Lectin; cadmium, plant protein; 2.17A {Allium sativum} PDB: 1kj1_A* 1bwu_P* 1kj1_D* 1bwu_Q* 1bwu_A* 1bwu_D* Back     alignment and structure
>3a0c_A Mannose/sialic acid-binding lectin; beta-prism II, sugar binding protein; 2.00A {Polygonatum cyrtonema} PDB: 3a0d_A* 3a0e_A* Back     alignment and structure
>1xd5_A Gastrodianin-1, antifungal protein GAFP-1; monocot mannose binding lectin, monomer, homogeneous beta- sheet; 2.00A {Gastrodia elata} SCOP: b.78.1.1 PDB: 1xd6_A Back     alignment and structure
>2dpf_A Curculin; sweet taste, taste modifying, plant protein; 1.50A {Curculigo latifolia} PDB: 2d04_B* 2d04_A* Back     alignment and structure
>3a0c_A Mannose/sialic acid-binding lectin; beta-prism II, sugar binding protein; 2.00A {Polygonatum cyrtonema} PDB: 3a0d_A* 3a0e_A* Back     alignment and structure
>1xd5_A Gastrodianin-1, antifungal protein GAFP-1; monocot mannose binding lectin, monomer, homogeneous beta- sheet; 2.00A {Gastrodia elata} SCOP: b.78.1.1 PDB: 1xd6_A Back     alignment and structure
>3dzw_A Agglutinin; lectin, mannobiose, mannose-alpha1, 3-mannose, D sugar binding protein; HET: MAN; 1.70A {Narcissus pseudonarcissus} SCOP: b.78.1.1 PDB: 1npl_A* 1jpc_A* 1msa_A* 1niv_A* Back     alignment and structure
>2dpf_A Curculin; sweet taste, taste modifying, plant protein; 1.50A {Curculigo latifolia} PDB: 2d04_B* 2d04_A* Back     alignment and structure
>1b2p_A Protein (lectin); mannose-binding lectin, monocot, aglutinin, bluebell bulbs, carbohydrate interactions, sugar binding protein; 1.70A {Hyacinthoides hispanica} SCOP: b.78.1.1 Back     alignment and structure
>1b2p_A Protein (lectin); mannose-binding lectin, monocot, aglutinin, bluebell bulbs, carbohydrate interactions, sugar binding protein; 1.70A {Hyacinthoides hispanica} SCOP: b.78.1.1 Back     alignment and structure
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0 Back     alignment and structure
>3r0e_B Lectin; carbohydrate binding, carbohydrate, sugar binding protein; 2.40A {Remusatia vivipara} Back     alignment and structure
>3r0e_A Lectin; carbohydrate binding, carbohydrate, sugar binding protein; 2.40A {Remusatia vivipara} Back     alignment and structure
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0 Back     alignment and structure
>3mez_A Mannose-specific lectin 3 chain 1; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0 Back     alignment and structure
>3mez_A Mannose-specific lectin 3 chain 1; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0 Back     alignment and structure
>3m7h_A Putidacin L1; monocot mannose-binding lectin, bacteriocin, LLPA, pseudomon bacterial toxin, siras, antimicrobial protein; 2.20A {Pseudomonas SP} PDB: 3m7j_A* Back     alignment and structure
>3dzw_A Agglutinin; lectin, mannobiose, mannose-alpha1, 3-mannose, D sugar binding protein; HET: MAN; 1.70A {Narcissus pseudonarcissus} SCOP: b.78.1.1 PDB: 1npl_A* 1jpc_A* 1msa_A* 1niv_A* Back     alignment and structure
>3r0e_A Lectin; carbohydrate binding, carbohydrate, sugar binding protein; 2.40A {Remusatia vivipara} Back     alignment and structure
>3r0e_B Lectin; carbohydrate binding, carbohydrate, sugar binding protein; 2.40A {Remusatia vivipara} Back     alignment and structure
>4h3o_A Lectin; cadmium, plant protein; 2.17A {Allium sativum} PDB: 1kj1_A* 1bwu_P* 1kj1_D* 1bwu_Q* 1bwu_A* 1bwu_D* Back     alignment and structure
>1dlp_A Lectin scafet precursor; two-domain lectin, beta prism II fold, native, sugar binding protein; 3.30A {Hyacinthoides hispanica} SCOP: b.78.1.1 b.78.1.1 Back     alignment and structure
>2ll3_A Micronemal protein 4; cell adhesion; NMR {Toxoplasma gondii} PDB: 2ll4_M* Back     alignment and structure
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 263
d1dlpa2120 b.78.1.1 (A:116-235) Fetuin-binding protein Scafet 4e-12
d1dlpa2120 b.78.1.1 (A:116-235) Fetuin-binding protein Scafet 7e-05
d1dlpa1115 b.78.1.1 (A:1-115) Fetuin-binding protein Scafet p 4e-10
d1dlpa1115 b.78.1.1 (A:1-115) Fetuin-binding protein Scafet p 0.002
d1kj1a_109 b.78.1.1 (A:) Lectin (agglutinin) {Garlic (Allium 2e-08
d1kj1a_109 b.78.1.1 (A:) Lectin (agglutinin) {Garlic (Allium 4e-06
d1xd5a_112 b.78.1.1 (A:) Gastrodianin (antifungal protein) {G 2e-08
d1b2pa_119 b.78.1.1 (A:) Lectin (agglutinin) {Bluebell (Scill 3e-08
d1b2pa_119 b.78.1.1 (A:) Lectin (agglutinin) {Bluebell (Scill 0.001
d1jpca_108 b.78.1.1 (A:) Lectin (agglutinin) {Snowdrop (Galan 8e-04
d1jpca_108 b.78.1.1 (A:) Lectin (agglutinin) {Snowdrop (Galan 0.002
>d1dlpa2 b.78.1.1 (A:116-235) Fetuin-binding protein Scafet precursor {Bluebell (Scilla campanulata) [TaxId: 81759]} Length = 120 Back     information, alignment and structure

class: All beta proteins
fold: beta-Prism II
superfamily: alpha-D-mannose-specific plant lectins
family: alpha-D-mannose-specific plant lectins
domain: Fetuin-binding protein Scafet precursor
species: Bluebell (Scilla campanulata) [TaxId: 81759]
 Score = 59.6 bits (144), Expect = 4e-12
 Identities = 17/72 (23%), Positives = 27/72 (37%), Gaps = 2/72 (2%)

Query: 20  GKPTFSLGSDGNLVLAEADGTVVCQSNTANKGVVGFKLLPNGNMVLHDSKGNFIWQSFD- 78
                S+ +D NLVL + D  V   +           L PNG M +  ++   +W S + 
Sbjct: 35  SPYRLSMETDCNLVLFDRDDRVWSTNTAGKGTGCRAVLQPNGRMDVLTNQNIAVWTSGNS 94

Query: 79  -CPTDTLLVGQS 89
                 + V Q 
Sbjct: 95  RSAGRYVFVLQP 106


>d1dlpa2 b.78.1.1 (A:116-235) Fetuin-binding protein Scafet precursor {Bluebell (Scilla campanulata) [TaxId: 81759]} Length = 120 Back     information, alignment and structure
>d1dlpa1 b.78.1.1 (A:1-115) Fetuin-binding protein Scafet precursor {Bluebell (Scilla campanulata) [TaxId: 81759]} Length = 115 Back     information, alignment and structure
>d1dlpa1 b.78.1.1 (A:1-115) Fetuin-binding protein Scafet precursor {Bluebell (Scilla campanulata) [TaxId: 81759]} Length = 115 Back     information, alignment and structure
>d1kj1a_ b.78.1.1 (A:) Lectin (agglutinin) {Garlic (Allium sativum) [TaxId: 4682]} Length = 109 Back     information, alignment and structure
>d1kj1a_ b.78.1.1 (A:) Lectin (agglutinin) {Garlic (Allium sativum) [TaxId: 4682]} Length = 109 Back     information, alignment and structure
>d1xd5a_ b.78.1.1 (A:) Gastrodianin (antifungal protein) {Gastrodia elata [TaxId: 91201]} Length = 112 Back     information, alignment and structure
>d1b2pa_ b.78.1.1 (A:) Lectin (agglutinin) {Bluebell (Scilla campanulata) [TaxId: 81759]} Length = 119 Back     information, alignment and structure
>d1b2pa_ b.78.1.1 (A:) Lectin (agglutinin) {Bluebell (Scilla campanulata) [TaxId: 81759]} Length = 119 Back     information, alignment and structure
>d1jpca_ b.78.1.1 (A:) Lectin (agglutinin) {Snowdrop (Galanthus nivalis) [TaxId: 4670]} Length = 108 Back     information, alignment and structure
>d1jpca_ b.78.1.1 (A:) Lectin (agglutinin) {Snowdrop (Galanthus nivalis) [TaxId: 4670]} Length = 108 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query263
d1kj1a_109 Lectin (agglutinin) {Garlic (Allium sativum) [TaxI 99.69
d1xd5a_112 Gastrodianin (antifungal protein) {Gastrodia elata 99.65
d1jpca_108 Lectin (agglutinin) {Snowdrop (Galanthus nivalis) 99.6
d1dlpa2120 Fetuin-binding protein Scafet precursor {Bluebell 99.55
d1dlpa1115 Fetuin-binding protein Scafet precursor {Bluebell 99.5
d1b2pa_119 Lectin (agglutinin) {Bluebell (Scilla campanulata) 99.36
d1b2pa_119 Lectin (agglutinin) {Bluebell (Scilla campanulata) 99.04
d1dlpa1115 Fetuin-binding protein Scafet precursor {Bluebell 98.96
d1kj1a_109 Lectin (agglutinin) {Garlic (Allium sativum) [TaxI 98.88
d1dlpa2120 Fetuin-binding protein Scafet precursor {Bluebell 98.86
d1jpca_108 Lectin (agglutinin) {Snowdrop (Galanthus nivalis) 98.8
d1xd5a_112 Gastrodianin (antifungal protein) {Gastrodia elata 98.52
>d1kj1a_ b.78.1.1 (A:) Lectin (agglutinin) {Garlic (Allium sativum) [TaxId: 4682]} Back     information, alignment and structure
class: All beta proteins
fold: beta-Prism II
superfamily: alpha-D-mannose-specific plant lectins
family: alpha-D-mannose-specific plant lectins
domain: Lectin (agglutinin)
species: Garlic (Allium sativum) [TaxId: 4682]
Probab=99.69  E-value=5.1e-17  Score=122.76  Aligned_cols=73  Identities=23%  Similarity=0.256  Sum_probs=64.1

Q ss_pred             CCCcEEEEcCCCCCCCCCCEEEEecCCcEEEEcCCCcEEEcCCCCC-CCeeEEEEeeCCCeeEEcCCCceEeeeccC
Q 047082            4 PKNSCSLNSIFASPVCGKPTFSLGSDGNLVLAEADGTVVCQSNTAN-KGVVGFKLLPNGNMVLHDSKGNFIWQSFDC   79 (263)
Q Consensus         4 ~~~~~vWvANr~~Pv~~~~~l~l~~~G~L~l~~~~g~~~Wst~~~~-~~~~~a~Lld~GNlvl~~~~~~~~WqSFd~   79 (263)
                      ...++||+||++.|+...+.|.|++||+|+|.|++|.+||+++++. .+...|+|+|+|||||++   ..+|||+-|
T Consensus        35 ~~~~~vW~ant~~~~~~~~~l~l~~dGnLvl~~~~g~~vW~s~t~~~~~~~~l~L~ddGNlvly~---~~~W~S~t~  108 (109)
T d1kj1a_          35 DHSTSVWASNTGILGKKGCKAVLQSDGNFVVYDAEGRSLWASHSVRGNGNYVLVLQEDGNVVIYG---SDIWSTGTY  108 (109)
T ss_dssp             ETTEEEEECCCCCTTCCCCEEEECTTSCEEEECSSSCEEEECCCCCCSSCCEEEECTTSCEEEEC---CEEEECCCC
T ss_pred             eCCEEEEEeCCCCCCceeEEEEEcCCceEEEEeCCCcEEEEEeeECCCCCEEEEEeCCCcEEEEC---CCEecCCCc
Confidence            3567899999999998889999999999999999999999998764 445679999999999996   479999865



>d1xd5a_ b.78.1.1 (A:) Gastrodianin (antifungal protein) {Gastrodia elata [TaxId: 91201]} Back     information, alignment and structure
>d1jpca_ b.78.1.1 (A:) Lectin (agglutinin) {Snowdrop (Galanthus nivalis) [TaxId: 4670]} Back     information, alignment and structure
>d1dlpa2 b.78.1.1 (A:116-235) Fetuin-binding protein Scafet precursor {Bluebell (Scilla campanulata) [TaxId: 81759]} Back     information, alignment and structure
>d1dlpa1 b.78.1.1 (A:1-115) Fetuin-binding protein Scafet precursor {Bluebell (Scilla campanulata) [TaxId: 81759]} Back     information, alignment and structure
>d1b2pa_ b.78.1.1 (A:) Lectin (agglutinin) {Bluebell (Scilla campanulata) [TaxId: 81759]} Back     information, alignment and structure
>d1b2pa_ b.78.1.1 (A:) Lectin (agglutinin) {Bluebell (Scilla campanulata) [TaxId: 81759]} Back     information, alignment and structure
>d1dlpa1 b.78.1.1 (A:1-115) Fetuin-binding protein Scafet precursor {Bluebell (Scilla campanulata) [TaxId: 81759]} Back     information, alignment and structure
>d1kj1a_ b.78.1.1 (A:) Lectin (agglutinin) {Garlic (Allium sativum) [TaxId: 4682]} Back     information, alignment and structure
>d1dlpa2 b.78.1.1 (A:116-235) Fetuin-binding protein Scafet precursor {Bluebell (Scilla campanulata) [TaxId: 81759]} Back     information, alignment and structure
>d1jpca_ b.78.1.1 (A:) Lectin (agglutinin) {Snowdrop (Galanthus nivalis) [TaxId: 4670]} Back     information, alignment and structure
>d1xd5a_ b.78.1.1 (A:) Gastrodianin (antifungal protein) {Gastrodia elata [TaxId: 91201]} Back     information, alignment and structure