Citrus Sinensis ID: 047100

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230---
Protein Sequence
MNRENMSESDLALLESIRQQLLEDDFEIFTTFPSETLPINNNETLNSPVSSFNSFSFTENINEYLSQGVSSSSHSSLHDGVNGGWISFDDQLGRNNDIGSAIANIDTSMTSPPHPPPLPTPQMDVARGTHVRMQYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYDTPEGAAFAYDRAAFKMRGSKAKLNFPHLIGSNVEPPVRVTKKRGSPEPPSSSSSLSSSSSVVSFRPG
Secondary Structure (PSIPRED)
ccccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccEEEEcccccHHHHHHHHHHHHHHccccccEEcccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccHcHHHHccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccHHccccEccEEEcccccEEEEEccccccccEEEEcccccHHHHHHHHHHHHHHHHcccEEEcccccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MNRENMSESDLALLESIRQQLLEDDfeifttfpsetlpinnnetlnspvssfnsfsfTENINEYLSqgvsssshsslhdgvnggwisfddqlgrnndigsaianidtsmtspphppplptpqmdvargthvrmqyrgvrrrpwgkfaaeirdpkkngarvwlgtydtpegaafaYDRAAFKMRgskaklnfphligsnveppvrvtkkrgspeppssssslsssssvvsfrpg
Flexible Loop (DISEMBL)
MNRENMSESDLALLESIRQQLLEDDFEIFTTFPSETLPINNNETLNSPVSSFNSFSFTENINEYLSQGVSSSSHSSLHDGVNGGWISFDDQLGRNNDIGSAIANIDTSMTSPPHPPPLPTPQMDVARGTHVRMqyrgvrrrpwgkfaaeirdpkkngarVWLGTYDTPEGAAFAYDRAAFKMRGSKAKlnfphligsnveppvrVTKKRgspeppssssslsssssvvsfrpg
Low Complexity Region (SEG)
MNRENMSESDLALLESIRQQLLEDDFEIFTTFPSETLPINNNETLNSPVssfnsfsfTENINEYLSQGVsssshssLHDGVNGGWISFDDQLGRNNDIGSAIANIDTSMTSpphppplptpQMDVARGTHVRMQYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYDTPEGAAFAYDRAAFKMRGSKAKLNFPHLIGSNVEPPVRVTKKRGspeppssssslsssssvvsFRPG
Disordered region (IsUnstruct)
*************LESIRQQLLEDDFEIFTTFPSETLPI***************FSFT*NI******************GVNGGWISFDDQLGR***********************************HVRMQYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYDTPEGAAFAYDRAAFKMRGSKAKLNFPHLI**************************************
Disordered Region (DISOPRED)
*********DLALLESIRQQLLEDDFEIFT***********************************************************************************************************VRRRPWGKFAAEIRDPKKNGARVWLGTYDTPEGAAFAYDRAAFKMRGSKAKLNFPH****************************************
Disordered Region (DISEMBL)
**********LALLESIRQQLLEDDFEIFTTFPSETLPINNNETLNSPVSSFNSFSFTENINEYLS***********HDGVNGGWISFDDQLGRNNDIGSAIANIDTSMTSPPHPPPLPTPQMDVARGTHVRMQYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYDTPEGAAFAYDRAAFKMRGSKAKLNFPHLIGSNVEPP*******************************
Disordered Region (DISPRO)
******SESDLALLESIRQQLLEDDF*************************F*SFSFTENINEYLSQGVSSSSHSSLHDGVNGGWIS********************************************RMQYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYDTPEGAAFAYDRAAFKMRGSKAKLNFPHLI**************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNRENMSESDLALLESIRQQLLEDDFEIFTTFPSETLPINNNETLNSPVSSFNSFSFTENINEYLSQGVSSSSHSSLHDGVNGGWISFDDQLGRNNDIGSAIANIDTSMTSPPHPPPLPTPQMDVARGTHVRMQYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYDTPEGAAFAYDRAAFKMRGSKAKLNFPHLIGSNVEPPVRVTKKRGSPEPPSSSSSLSSSSSVVSFRPG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	233	2.2.26 [Sep-21-2011]
Q8L9K1	226	Ethylene-responsive trans	yes	no	0.472	0.486	0.652	8e-36
Q40479	233	Ethylene-responsive trans	N/A	no	0.592	0.592	0.544	6e-34
Q40476	236	Ethylene-responsive trans	N/A	no	0.394	0.389	0.731	1e-32
Q9LW50	237	Ethylene-responsive trans	N/A	no	0.562	0.552	0.535	8e-32
Q84XB3	244	Ethylene-responsive trans	N/A	no	0.433	0.413	0.603	1e-28
O80337	268	Ethylene-responsive trans	no	no	0.828	0.720	0.408	3e-28
O80338	243	Ethylene-responsive trans	no	no	0.729	0.699	0.393	3e-27
O04681	161	Pathogenesis-related gene	N/A	no	0.266	0.385	0.741	7e-23
Q8VY90	221	Ethylene-responsive trans	no	no	0.442	0.466	0.514	8e-22
Q9LW48	282	Ethylene-responsive trans	N/A	no	0.334	0.276	0.564	1e-21

>sp|Q8L9K1|ERF99_ARATH Ethylene-responsive transcription factor 13 OS=Arabidopsis thaliana GN=ERF13 PE=2 SV=2

 Score =  150 bits (379), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 79/121 (65%), Positives = 89/121 (73%), Gaps = 11/121 (9%)

Query: 113 PHPPPLPTPQMD------VARGTHV----RMQYRGVRRRPWGKFAAEIRDPKKNGARVWL 162
           P  PP+ +P  +       A G+H      MQYRGVRRRPWGKFAAEIRDPKKNGARVWL
Sbjct: 60  PSVPPVTSPAEENKPPATKASGSHAPRQKGMQYRGVRRRPWGKFAAEIRDPKKNGARVWL 119

Query: 163 GTYDTPEGAAFAYDRAAFKMRGSKAKLNFPHLIGSNVEPPVRVTKKRGSPEPPSSSSSLS 222
           GTY+TPE AA AYDRAAF++RGSKAKLNFPHLIGS    PVR+  +R SPE PS S  L+
Sbjct: 120 GTYETPEDAAVAYDRAAFQLRGSKAKLNFPHLIGSCKYEPVRIRPRRRSPE-PSVSDQLT 178

Query: 223 S 223
           S
Sbjct: 179 S 179

Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.
Arabidopsis thaliana (taxid: 3702)

>sp|Q40479|ERF2_TOBAC Ethylene-responsive transcription factor 2 OS=Nicotiana tabacum GN=ERF2 PE=2 SV=1

 Score =  144 bits (362), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 80/147 (54%), Positives = 92/147 (62%), Gaps = 9/147 (6%)

Query: 77  LHDGVNGGWISFD---DQLGRNNDIGSAIANIDTSMTSPPHPPPLPTPQMDVARGTHVRM 133
           L D +  GW  F+    ++          A I     +PP      T Q  V +G H   
Sbjct: 44  LSDALTAGWTPFNLTSTEIKAEPREEIEPATIPVPSVAPPAE--TTTAQAVVPKGRH--- 98

Query: 134 QYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYDTPEGAAFAYDRAAFKMRGSKAKLNFPH 193
            YRGVR+RPWGKFAAEIRDP KNGARVWLGTY+T E AA AYD+AA++MRGSKA LNFPH
Sbjct: 99  -YRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEEAALAYDKAAYRMRGSKALLNFPH 157

Query: 194 LIGSNVEPPVRVTKKRGSPEPPSSSSS 220
            IG N   PVR+T KR SPEP SSS S
Sbjct: 158 RIGLNEPEPVRLTAKRRSPEPASSSIS 184

Acts as a transcriptional activator and may be involved in disease resistance pathways. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase cascade, and to be influenced by methyl-jasmonate.

Nicotiana tabacum (taxid: 4097)

>sp|Q40476|ERF1_TOBAC Ethylene-responsive transcription factor 1 OS=Nicotiana tabacum GN=ERF1 PE=2 SV=1

 Score =  139 bits (351), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 71/97 (73%), Positives = 77/97 (79%), Gaps = 5/97 (5%)

Query: 127 RGTHVRMQYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYDTPEGAAFAYDRAAFKMRGSK 186
           RG H    YRGVRRRPWGKFAAEIRDP KNGARVWLGTY+T E AA AYD+AA++MRGSK
Sbjct: 101 RGRH----YRGVRRRPWGKFAAEIRDPAKNGARVWLGTYETDEEAAIAYDKAAYRMRGSK 156

Query: 187 AKLNFPHLIGSNVEPPVRVT-KKRGSPEPPSSSSSLS 222
           A LNFPH IG N   PVRVT K+R SPEP SSS + S
Sbjct: 157 AHLNFPHRIGLNEPEPVRVTAKRRASPEPASSSENSS 193

Probably acts as a transcriptional activator and may be involved in disease resistance pathways (By similarity). Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase cascade and to be influenced by methyl-jasmonate.

Nicotiana tabacum (taxid: 4097)

>sp|Q9LW50|ERF2_NICSY Ethylene-responsive transcription factor 2 OS=Nicotiana sylvestris GN=ERF2 PE=2 SV=1

 Score =  137 bits (344), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 75/140 (53%), Positives = 87/140 (62%), Gaps = 9/140 (6%)

Query: 77  LHDGVNGGWISFDDQLGRNNDIGSAIANIDTSMTSPPH---PPPLPTPQMDVARGTHVRM 133
           L D +  GW  F+  L            I+ + +  P    P    T Q  V +G H   
Sbjct: 48  LSDALTTGWTPFN--LTSTEIKAEPREEIEPATSPVPSVAPPAETTTAQAVVPKGRH--- 102

Query: 134 QYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYDTPEGAAFAYDRAAFKMRGSKAKLNFPH 193
            YRGVR+RPWGKFAAEIRDP KNGARVWLGTY+T E AA AYD+AA++MRGSKA LNFPH
Sbjct: 103 -YRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEEAALAYDKAAYRMRGSKALLNFPH 161

Query: 194 LIGSNVEPPVRVTKKRGSPE 213
            IG N   PVR+T KR SPE
Sbjct: 162 RIGLNEPEPVRLTVKRRSPE 181

Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional activator.

Nicotiana sylvestris (taxid: 4096)

>sp|Q84XB3|ERF1_SOLLC Ethylene-responsive transcription factor 1 OS=Solanum lycopersicum GN=ERF1 PE=2 SV=1

 Score =  126 bits (316), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 64/106 (60%), Positives = 76/106 (71%), Gaps = 5/106 (4%)

Query: 104 NIDTSMTSPPHPPPLPTPQMDVARGTHVRMQYRGVRRRPWGKFAAEIRDPKKNGARVWLG 163
            I+ +M++   PP +  P     +G H    YRGVR+RPWGKFAAEIRDP KNGARVWLG
Sbjct: 81  EIEPAMSTSVSPPTV-APAALQPKGRH----YRGVRQRPWGKFAAEIRDPAKNGARVWLG 135

Query: 164 TYDTPEGAAFAYDRAAFKMRGSKAKLNFPHLIGSNVEPPVRVTKKR 209
           TY++ E AA AY +AAF+MRG+KA LNFPH IG N   PVRVT KR
Sbjct: 136 TYESAEEAALAYGKAAFRMRGTKALLNFPHRIGLNEPEPVRVTVKR 181

Involved in the regulation of gene expression during fruit ripening, by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Probably acts as a transcriptional activator and may be involved in disease resistance pathways.

Solanum lycopersicum (taxid: 4081)

>sp|O80337|EF100_ARATH Ethylene-responsive transcription factor 1A OS=Arabidopsis thaliana GN=ERF1A PE=1 SV=2

 Score =  125 bits (314), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 89/218 (40%), Positives = 118/218 (54%), Gaps = 25/218 (11%)

Query: 7   SESDLALLESIRQQLLEDDFEIFT--TFPSETLPINNNETLNSPVSSFN-SFS-----FT 58
           S+SD A LESIR+ LL +   I +  T  S T      +++  PV   N SFS     FT
Sbjct: 7   SQSDYAFLESIRRHLLGESEPILSESTASSVTQSCVTGQSIK-PVYGRNPSFSKLYPCFT 65

Query: 59  ENINEY-LSQGVSSS--SHSSLHDGVNGGWISFDDQLGRNN--------DIGSAIANIDT 107
           E+  +  L +  S     +  L+D  +GGW         +         +   + A +D+
Sbjct: 66  ESWGDLPLKENDSEDMLVYGILNDAFHGGWEPSSSSSDEDRSSFPSVKIETPESFAAVDS 125

Query: 108 SMTSPPHPPPLPTPQMDVARGTHVRMQYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYDT 167
                    P+ +  +  A+G H    YRGVR+RPWGKFAAEIRDP KNGARVWLGT++T
Sbjct: 126 VPVKKEKTSPV-SAAVTAAKGKH----YRGVRQRPWGKFAAEIRDPAKNGARVWLGTFET 180

Query: 168 PEGAAFAYDRAAFKMRGSKAKLNFPHLIGSNVEPPVRV 205
            E AA AYDRAAF+MRGS+A LNFP  + S    PVR+
Sbjct: 181 AEDAALAYDRAAFRMRGSRALLNFPLRVNSGEPDPVRI 218

Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|O80338|EF101_ARATH Ethylene-responsive transcription factor 2 OS=Arabidopsis thaliana GN=ERF2 PE=2 SV=1

 Score =  122 bits (305), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 85/216 (39%), Positives = 108/216 (50%), Gaps = 46/216 (21%)

Query: 8   ESDLALLESIRQQLL----EDDFEIFTTFPSET-------LPINNNETLNSPVSSF--NS 54
           ESD ALLESI + LL    E++  +  + PS         LP+  N++ +  V     ++
Sbjct: 8   ESDYALLESITRHLLGGGGENELRLNESTPSSCFTESWGGLPLKENDSEDMLVYGLLKDA 67

Query: 55  FSFTENINEYLSQGVSSSSHSSLHDGVNGGWISFDDQLGRNNDIGSAIANIDTSMTSPPH 114
           F F            SSS  S L D                    +       + T+   
Sbjct: 68  FHFD----------TSSSDLSCLFD------------------FPAVKVEPTENFTAMEE 99

Query: 115 PPPLPTPQMDVA-RGTHVRMQYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYDTPEGAAF 173
            P    P  + A +  H    YRGVR+RPWGKFAAEIRDP KNGARVWLGT++T E AA 
Sbjct: 100 KPKKAIPVTETAVKAKH----YRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAAL 155

Query: 174 AYDRAAFKMRGSKAKLNFPHLIGSNVEPPVRVTKKR 209
           AYD AAF+MRGS+A LNFP  + S    PVR+T KR
Sbjct: 156 AYDIAAFRMRGSRALLNFPLRVNSGEPDPVRITSKR 191

Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Involved in disease resistance pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|O04681|PTI5_SOLLC Pathogenesis-related genes transcriptional activator PTI5 OS=Solanum lycopersicum GN=PTI5 PE=2 SV=1

 Score =  107 bits (267), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 46/62 (74%), Positives = 54/62 (87%)

Query: 134 QYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYDTPEGAAFAYDRAAFKMRGSKAKLNFPH 193
           +YRGVRRRPWGK+AAEIRD  ++GARVWLGT++T E AA AYDRAAF+MRG+KA LNFP 
Sbjct: 58  KYRGVRRRPWGKYAAEIRDSARHGARVWLGTFETAEEAALAYDRAAFRMRGAKALLNFPS 117

Query: 194 LI 195
            I
Sbjct: 118 EI 119

Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Activates plants defense genes. Can confer resistance to Pseudomonas syringae tomato by potentiating the transcription of a set of pathogenesis related genes, downstream to a defense signaling pathway involving PTO and PRF, but probably independent of ethylene, jasmonate and salicylic acid.

Solanum lycopersicum (taxid: 4081)

>sp|Q8VY90|EF105_ARATH Ethylene-responsive transcription factor ERF105 OS=Arabidopsis thaliana GN=ERF105 PE=2 SV=1

 Score =  103 bits (258), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 54/105 (51%), Positives = 64/105 (60%), Gaps = 2/105 (1%)

Query: 96  NDIGSAIANIDTSMTSPPHPP--PLPTPQMDVARGTHVRMQYRGVRRRPWGKFAAEIRDP 153
           +   S I +  TS  S   PP   +  P        + +  YRGVRRRPWGK+AAEIRDP
Sbjct: 31  DTFASTIHHCTTSTLSQRKPPLATIAVPTTAPVVQENDQRHYRGVRRRPWGKYAAEIRDP 90

Query: 154 KKNGARVWLGTYDTPEGAAFAYDRAAFKMRGSKAKLNFPHLIGSN 198
            K G RVWLGT+DT   AA  YD+AAFK+RGSKA LNFP   G +
Sbjct: 91  NKKGVRVWLGTFDTAMEAARGYDKAAFKLRGSKAILNFPLEAGKH 135

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LW48|ERF5_NICSY Ethylene-responsive transcription factor 5 OS=Nicotiana sylvestris GN=ERF5 PE=2 SV=1

 Score =  103 bits (256), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 48/85 (56%), Positives = 60/85 (70%), Gaps = 7/85 (8%)

Query: 132 RMQYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYDTPEGAAFAYDRAAFKMRGSKAKLNF 191
           +  YRGVR+RPWGKFAAEIRDP + G RVWLGT+DT   AA AYDRAA+K+RGSKA +NF
Sbjct: 135 KKHYRGVRQRPWGKFAAEIRDPNRKGTRVWLGTFDTAIEAAKAYDRAAYKLRGSKAIVNF 194

Query: 192 PHLIG-------SNVEPPVRVTKKR 209
           P  +        + + P V  ++KR
Sbjct: 195 PLEVANFKQEFNNEIRPLVNSSRKR 219

Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional activator.

Nicotiana sylvestris (taxid: 4096)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	233
292668939	278	AP2 domain class transcription factor [M	0.815	0.683	0.469	8e-37
255541048	221	Ethylene-responsive transcription factor	0.776	0.819	0.469	9e-37
224137170	227	AP2/ERF domain-containing transcription	0.802	0.823	0.483	4e-36
255541050	225	Ethylene-responsive transcription factor	0.781	0.808	0.425	7e-36
21594007	226	putative ethylene response element bindi	0.472	0.486	0.652	4e-34
356540552	240	PREDICTED: ethylene-responsive transcrip	0.879	0.854	0.436	4e-34
297824519	240	hypothetical protein ARALYDRAFT_903921 [	0.472	0.458	0.634	4e-34
15225361	226	ethylene-responsive transcription factor	0.472	0.486	0.652	4e-34
224137164	193	AP2/ERF domain-containing transcription	0.407	0.492	0.707	2e-33
255541056	223	Ethylene-responsive transcription factor	0.708	0.739	0.444	3e-33

>gi|292668939|gb|ADE41124.1| AP2 domain class transcription factor [Malus x domestica]

 Score =  159 bits (402), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 101/215 (46%), Positives = 127/215 (59%), Gaps = 25/215 (11%)

Query: 9   SDLALLESIRQQLLEDDFEIFTTFPSETLPINNNET--LNSPVSSFNSFSFTENINEY-- 64
           SD +LLESIRQ LL+D+F+   T   E  P  +     ++S   SF++   TE+  +   
Sbjct: 9   SDFSLLESIRQHLLDDNFD---TTLQELSPTASGSPPPMHSQSLSFSTLFSTESWMDMPF 65

Query: 65  -LSQGVSSSSHSSLHDGVNGGWISFDDQLGRNNDIGSAIANIDTSMTSPPHPPPLPTPQM 123
            +    ++    SL DG +    S D              ++D   ++P  P P    + 
Sbjct: 66  KVELEDTNDVVGSLSDGTDEWSPSSDHH------------HVDVIESTPVKPEPWEVVRQ 113

Query: 124 D--VARGTHV---RMQYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYDTPEGAAFAYDRA 178
           +  V R TH    R  +RGVRRRPWGK+AAEIRDPKKNGARVWLGTY+T EGAA AYD+A
Sbjct: 114 EIVVVRETHTPPSRQHFRGVRRRPWGKYAAEIRDPKKNGARVWLGTYETAEGAALAYDQA 173

Query: 179 AFKMRGSKAKLNFPHLIGSNVEPPVRVTKKRGSPE 213
           AFK+RGSKAKLNFPHLIGS    PVRVT KR  PE
Sbjct: 174 AFKIRGSKAKLNFPHLIGSEGYEPVRVTVKRRVPE 208

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255541048|ref|XP_002511588.1| Ethylene-responsive transcription factor, putative [Ricinus communis] gi|223548768|gb|EEF50257.1| Ethylene-responsive transcription factor, putative [Ricinus communis]

 Score =  159 bits (402), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 101/215 (46%), Positives = 133/215 (61%), Gaps = 34/215 (15%)

Query: 13  LLESIRQQLLED-DFEIFTTFPSETLPINN---NETLNSPVSSFNSFSFTENINEYLSQG 68
           L +SI+Q LLED +F+  T+ P    P N+   N +L S + +  SF   ++I++ +S  
Sbjct: 14  LFDSIQQYLLEDHEFQTLTSVP----PFNSFQENSSLTSLLLTDPSFD-VDDIDDRISCS 68

Query: 69  VSSSSHSSLHDGVNGGWISFDDQLGRNNDIGSAI-----ANIDTSMTSPPHPPPLPTPQM 123
            SS+        +   WI+  DQL    +I + I     + ++ ++TSP           
Sbjct: 69  FSSTD-------LLDEWINSSDQLDSTVNIKAEIPDEVASTLEDAVTSP---------NA 112

Query: 124 DVARGTHV---RMQYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYDTPEGAAFAYDRAAF 180
           + A   +      QYRGVRRRPWGK+AAEIRDPKKNGARVWLGTY+TPE AA AYD+AAF
Sbjct: 113 ETAGKKNAPSKGWQYRGVRRRPWGKYAAEIRDPKKNGARVWLGTYETPEDAALAYDQAAF 172

Query: 181 KMRGSKAKLNFPHLIGSN-VEPPVRVTKKRGSPEP 214
           KMRG KAKLNFPHLIGSN  +PPVRV+ KR S +P
Sbjct: 173 KMRGCKAKLNFPHLIGSNDYQPPVRVSPKRRSLDP 207

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224137170|ref|XP_002327053.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa] gi|222835368|gb|EEE73803.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa]

 Score =  157 bits (397), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 104/215 (48%), Positives = 122/215 (56%), Gaps = 28/215 (13%)

Query: 1   MNRENMSESDLALLESIRQQLLEDDFEIFTTFPSETLPINNNETLNSPVS----SFNSFS 56
           M  +  S SD ALLESIR  LLED          E +P  NN     PV     SFN   
Sbjct: 1   MYSQAASRSDFALLESIRHHLLED----------EPVPEINNGIQARPVYCESLSFNRLF 50

Query: 57  FTENINEYLSQGVSSSSHSSLHDGVNGGWISFDDQLGRNNDIGS--AIANIDTSMTSPPH 114
             EN ++ L Q  +SS   +    V     S D Q    N + S    +N +  ++    
Sbjct: 51  SMENWSDILLQIDNSSQTMACDTQVPE---SLDMQWSLWNQVDSMTTTSNYEFEVSVEDA 107

Query: 115 PPPLPTPQMDVARGTHVRMQYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYDTPEGAAFA 174
              LP P     +G +    Y+GVRRRPWGK+AAEIRDPKKNGAR WLGTY+TPE AA A
Sbjct: 108 SNYLPPP-----KGRN----YKGVRRRPWGKYAAEIRDPKKNGARQWLGTYETPEDAAMA 158

Query: 175 YDRAAFKMRGSKAKLNFPHLIGSNVEPPVRVTKKR 209
           YDRAAFKMRG+KAKLNFPHLIGS+   PVRVT KR
Sbjct: 159 YDRAAFKMRGAKAKLNFPHLIGSSNYEPVRVTNKR 193

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255541050|ref|XP_002511589.1| Ethylene-responsive transcription factor, putative [Ricinus communis] gi|223548769|gb|EEF50258.1| Ethylene-responsive transcription factor, putative [Ricinus communis]

 Score =  156 bits (394), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 94/221 (42%), Positives = 120/221 (54%), Gaps = 39/221 (17%)

Query: 5   NMSESDLALLESIRQQLLEDDFEIFTTFPSETLPINNNETLNSPVSSFNSFSFT------ 58
           +++  DLA L+SIRQ LLEDDFE   T P   L   ++ T    + + N   F       
Sbjct: 7   SLAGDDLAFLDSIRQYLLEDDFE---TLPKVNLFDCSSSTSLPSIGACNGLPFKLDNLLD 63

Query: 59  ---ENINEYLSQGVSSSSHSSLHDGVNGGWISFDDQLGRNNDIGSAIANIDTSMTSPPHP 115
              ENI   LSQ                    FD ++ +     + I +      +    
Sbjct: 64  IDEENIETPLSQ--------------------FDSEVEKTTVPAATIISESQKAVTSEEE 103

Query: 116 PPLPTPQMDVARGTHVRMQYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYDTPEGAAFAY 175
             +   +   ++G     QYRGVRRRPWGK+AAEIRDPKKNGAR+WLGTY+ PE AA AY
Sbjct: 104 VAMALKENTPSKGC----QYRGVRRRPWGKYAAEIRDPKKNGARIWLGTYEKPEDAALAY 159

Query: 176 DRAAFKMRGSKAKLNFPHLIGSNVEPPVRV---TKKRGSPE 213
           DRAAFKMRG++AKLNFPHLIGS+   P+R     +KR SPE
Sbjct: 160 DRAAFKMRGARAKLNFPHLIGSDEYEPIRAGNNKRKRCSPE 200

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21594007|gb|AAM65925.1| putative ethylene response element binding protein (EREBP) [Arabidopsis thaliana]

 Score =  150 bits (379), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 79/121 (65%), Positives = 89/121 (73%), Gaps = 11/121 (9%)

Query: 113 PHPPPLPTPQMD------VARGTHV----RMQYRGVRRRPWGKFAAEIRDPKKNGARVWL 162
           P  PP+ +P  +       A G+H      MQYRGVRRRPWGKFAAEIRDPKKNGARVWL
Sbjct: 60  PSVPPVTSPAEEDKPPATKASGSHAPRQKGMQYRGVRRRPWGKFAAEIRDPKKNGARVWL 119

Query: 163 GTYDTPEGAAFAYDRAAFKMRGSKAKLNFPHLIGSNVEPPVRVTKKRGSPEPPSSSSSLS 222
           GTY+TPE AA AYDRAAF++RGSKAKLNFPHLIGS    PVR+  +R SPE PS S  L+
Sbjct: 120 GTYETPEDAAVAYDRAAFQLRGSKAKLNFPHLIGSCKYEPVRIRPRRRSPE-PSVSDQLT 178

Query: 223 S 223
           S
Sbjct: 179 S 179

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356540552|ref|XP_003538752.1| PREDICTED: ethylene-responsive transcription factor 1A-like [Glycine max]

 Score =  150 bits (379), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 106/243 (43%), Positives = 132/243 (54%), Gaps = 38/243 (15%)

Query: 1   MNRENMSESDLALLESIRQQLLEDDFEIFTTFPSETLPINNNET-LNSPVSSFNSFS--- 56
           M  ++  ESDLALL+SIR+ LL D  E     P+    +N+  T L S  SSF       
Sbjct: 1   MYGQSCYESDLALLDSIRRHLLGDSEEHRFGAPN----VNSGSTPLYSRSSSFGRLYPCL 56

Query: 57  ---------FTENINEYLSQGVSSSSHSSLHDGVNGGWISFDDQLGRNNDIGSAIANI-- 105
                      ++  + L  GV       L D VN GW+   D     +   + +  +  
Sbjct: 57  SNDWGELPLMEDDSEDMLLYGV-------LRDAVNVGWVPSLDASSPESFSSAFMPPVTV 109

Query: 106 --DTSMTSPPHP---PPL---PTPQMDVARGTHVRMQYRGVRRRPWGKFAAEIRDPKKNG 157
             +T +   P P   PP+   P P +  A+G H    YRGVR+RPWGKFAAEIRDP KNG
Sbjct: 110 KSETDLFPAPEPICNPPVVQGPAPAVVPAKGKH----YRGVRQRPWGKFAAEIRDPAKNG 165

Query: 158 ARVWLGTYDTPEGAAFAYDRAAFKMRGSKAKLNFPHLIGSNVEPPVRVTKKRGSPEPPSS 217
           ARVWLGT++T E AA AYDRAA++MRGS+A LNFP  I S    PVRVT KR S EP SS
Sbjct: 166 ARVWLGTFETAEDAALAYDRAAYRMRGSRALLNFPLRINSGEPEPVRVTAKRASAEPCSS 225

Query: 218 SSS 220
           S S
Sbjct: 226 SES 228

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297824519|ref|XP_002880142.1| hypothetical protein ARALYDRAFT_903921 [Arabidopsis lyrata subsp. lyrata] gi|297325981|gb|EFH56401.1| hypothetical protein ARALYDRAFT_903921 [Arabidopsis lyrata subsp. lyrata]

 Score =  150 bits (379), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 80/126 (63%), Positives = 90/126 (71%), Gaps = 16/126 (12%)

Query: 113 PHPPPLPTPQMDV-----------ARGTHV----RMQYRGVRRRPWGKFAAEIRDPKKNG 157
           P  PP+ +P  +V           A G+H      MQYRGVRRRPWGKFAAEIRDPKKNG
Sbjct: 69  PSVPPVTSPAEEVSVRGEEKPPATASGSHAPRQKGMQYRGVRRRPWGKFAAEIRDPKKNG 128

Query: 158 ARVWLGTYDTPEGAAFAYDRAAFKMRGSKAKLNFPHLIGSNVEPPVRVTKKRGSPEPPSS 217
           ARVWLGTY+TPE AA AYDRAAF++RGSKAKLNFPHLIGS    PVR+  +R SPE PS 
Sbjct: 129 ARVWLGTYETPEDAAVAYDRAAFQLRGSKAKLNFPHLIGSCKYEPVRIRPRRRSPE-PSV 187

Query: 218 SSSLSS 223
           S  L+S
Sbjct: 188 SDQLTS 193

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15225361|ref|NP_182011.1| ethylene-responsive transcription factor 13 [Arabidopsis thaliana] gi|57012834|sp|Q8L9K1.2|ERF99_ARATH RecName: Full=Ethylene-responsive transcription factor 13; Short=AtERF13; AltName: Full=Ethylene-responsive element-binding factor 13; Short=EREBP-13 gi|13272437|gb|AAK17157.1|AF325089_1 putative ethylene response element binding protein (EREBP) [Arabidopsis thaliana] gi|13899091|gb|AAK48967.1|AF370540_1 putative ethylene response element binding protein; EREBP [Arabidopsis thaliana] gi|2344900|gb|AAC31840.1| putative ethylene response element binding protein (EREBP) [Arabidopsis thaliana] gi|18377440|gb|AAL66886.1| putative ethylene response element binding protein (EREBP) [Arabidopsis thaliana] gi|330255379|gb|AEC10473.1| ethylene-responsive transcription factor 13 [Arabidopsis thaliana]

 Score =  150 bits (379), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 79/121 (65%), Positives = 89/121 (73%), Gaps = 11/121 (9%)

Query: 113 PHPPPLPTPQMD------VARGTHV----RMQYRGVRRRPWGKFAAEIRDPKKNGARVWL 162
           P  PP+ +P  +       A G+H      MQYRGVRRRPWGKFAAEIRDPKKNGARVWL
Sbjct: 60  PSVPPVTSPAEENKPPATKASGSHAPRQKGMQYRGVRRRPWGKFAAEIRDPKKNGARVWL 119

Query: 163 GTYDTPEGAAFAYDRAAFKMRGSKAKLNFPHLIGSNVEPPVRVTKKRGSPEPPSSSSSLS 222
           GTY+TPE AA AYDRAAF++RGSKAKLNFPHLIGS    PVR+  +R SPE PS S  L+
Sbjct: 120 GTYETPEDAAVAYDRAAFQLRGSKAKLNFPHLIGSCKYEPVRIRPRRRSPE-PSVSDQLT 178

Query: 223 S 223
           S
Sbjct: 179 S 179

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224137164|ref|XP_002327050.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa] gi|222835365|gb|EEE73800.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa]

 Score =  148 bits (374), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 70/99 (70%), Positives = 82/99 (82%), Gaps = 4/99 (4%)

Query: 120 TPQMDVARGTHVRM----QYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYDTPEGAAFAY 175
            P +DVA  +++ +    QYRGVRRRPWGK+AAEIRDPKKNGAR+WLGTY+TPE AA AY
Sbjct: 81  VPGVDVACKSNLALPKGSQYRGVRRRPWGKYAAEIRDPKKNGARMWLGTYETPEDAALAY 140

Query: 176 DRAAFKMRGSKAKLNFPHLIGSNVEPPVRVTKKRGSPEP 214
           D+AAFK+RGSKAKLNFPHLIGS    PVR++ KR SPEP
Sbjct: 141 DQAAFKIRGSKAKLNFPHLIGSEEYEPVRLSSKRRSPEP 179

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255541056|ref|XP_002511592.1| Ethylene-responsive transcription factor, putative [Ricinus communis] gi|223548772|gb|EEF50261.1| Ethylene-responsive transcription factor, putative [Ricinus communis]

 Score =  147 bits (372), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 92/207 (44%), Positives = 120/207 (57%), Gaps = 42/207 (20%)

Query: 13  LLESIRQQLLEDDFEIFTTFPSETLPINNNETLNSPVSSFNSFSFTENINEYLSQ-GVSS 71
           +LESI+Q LL DDFE  T F            +N+ +++F+      N   +L Q   S+
Sbjct: 18  VLESIQQHLLTDDFE--TPF------------MNTSLATFS------NNTSFLGQLDYST 57

Query: 72  SSHSSLHDGVNGGWISFDDQLGRNNDIGSAIANIDTSMTSPPHPPPLPTPQMDVARGTHV 131
            +  ++ D +        D    ++   +A   +   +  P H   LPT + +       
Sbjct: 58  YTQDNVSDNI--------DTFPSHHLDSTAFERVSPEVARPNH---LPTRKRN------- 99

Query: 132 RMQYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYDTPEGAAFAYDRAAFKMRGSKAKLNF 191
              Y GVR+RPWG +AAEIRDPKKNGARVWLGTY+TPE AA AYDRAAFKMRG+KAKLNF
Sbjct: 100 ---YMGVRKRPWGTYAAEIRDPKKNGARVWLGTYETPEDAALAYDRAAFKMRGTKAKLNF 156

Query: 192 PHLIGSNVEPPVRVTKKRGSPEPPSSS 218
           PHLIGS+   PVRV+ +R SPE   SS
Sbjct: 157 PHLIGSDDLEPVRVSNRRRSPESDESS 183

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	233
TAIR|locus:2055002	226	ERF13 "ethylene-responsive ele	0.360	0.371	0.761	2.6e-31
TAIR|locus:2129116	268	ERF-1 "ethylene responsive ele	0.549	0.477	0.475	4.2e-30
TAIR|locus:2171514	243	ERF2 "ethylene responsive elem	0.321	0.308	0.72	7.6e-29
UNIPROTKB|Q5MFV1	303	BIERF3 "BTH-induced ERF transc	0.819	0.630	0.383	7.6e-25
TAIR|locus:2176187	221	AT5G51190 [Arabidopsis thalian	0.248	0.262	0.775	7.9e-24
TAIR|locus:2156171	248	AT5G61890 [Arabidopsis thalian	0.283	0.266	0.710	3e-21
TAIR|locus:2018289	133	ERF14 "Ethylene-responsive ele	0.257	0.451	0.75	4.9e-21
TAIR|locus:2086203	139	ESE1 "ethylene and salt induci	0.261	0.438	0.737	4.9e-21
TAIR|locus:2171529	300	ERF5 "ethylene responsive elem	0.278	0.216	0.707	6.3e-21
TAIR|locus:2151576	201	AT5G61590 [Arabidopsis thalian	0.317	0.368	0.64	6.3e-21

TAIR|locus:2055002 ERF13 "ethylene-responsive element binding factor 13" [Arabidopsis thaliana (taxid:3702)]

 Score = 344 (126.2 bits), Expect = 2.6e-31, P = 2.6e-31
 Identities = 67/88 (76%), Positives = 73/88 (82%)

Query:   126 ARGTHVR----MQYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYDTPEGAAFAYDRAAFK 181
             A G+H      MQYRGVRRRPWGKFAAEIRDPKKNGARVWLGTY+TPE AA AYDRAAF+
Sbjct:    79 ASGSHAPRQKGMQYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYETPEDAAVAYDRAAFQ 138

Query:   182 MRGSKAKLNFPHLIGSNVEPPVRVTKKR 209
             +RGSKAKLNFPHLIGS    PVR+  +R
Sbjct:   139 LRGSKAKLNFPHLIGSCKYEPVRIRPRR 166

GO:0003677 "DNA binding" evidence=IEA;ISS;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;ISS;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA;TAS

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

TAIR|locus:2129116 ERF-1 "ethylene responsive element binding factor 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 297 (109.6 bits), Expect = 4.2e-30, Sum P(2) = 4.2e-30
 Identities = 67/141 (47%), Positives = 84/141 (59%)

Query:    77 LHDGVNGGW--ISFDDQLGRNN------DIGSAIANIDTSMTSXXXXXXXXXXQMDVARG 128
             L+D  +GGW   S      R++      +   + A +D S+             +  A+G
Sbjct:    87 LNDAFHGGWEPSSSSSDEDRSSFPSVKIETPESFAAVD-SVPVKKEKTSPVSAAVTAAKG 145

Query:   129 THVRMQYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYDTPEGAAFAYDRAAFKMRGSKAK 188
              H    YRGVR+RPWGKFAAEIRDP KNGARVWLGT++T E AA AYDRAAF+MRGS+A 
Sbjct:   146 KH----YRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRAL 201

Query:   189 LNFPHLIGSNVEPPVRVTKKR 209
             LNFP  + S    PVR+  KR
Sbjct:   202 LNFPLRVNSGEPDPVRIKSKR 222

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;IDA

GO:0005643 "nuclear pore" evidence=ISS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

TAIR|locus:2171514 ERF2 "ethylene responsive element binding factor 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 288 (106.4 bits), Expect = 7.6e-29, Sum P(2) = 7.6e-29
 Identities = 54/75 (72%), Positives = 61/75 (81%)

Query:   135 YRGVRRRPWGKFAAEIRDPKKNGARVWLGTYDTPEGAAFAYDRAAFKMRGSKAKLNFPHL 194
             YRGVR+RPWGKFAAEIRDP KNGARVWLGT++T E AA AYD AAF+MRGS+A LNFP  
Sbjct:   117 YRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDIAAFRMRGSRALLNFPLR 176

Query:   195 IGSNVEPPVRVTKKR 209
             + S    PVR+T KR
Sbjct:   177 VNSGEPDPVRITSKR 191

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IDA;TAS

GO:0005634 "nucleus" evidence=ISM;TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;IDA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA;TAS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IMP;IDA

GO:0009864 "induced systemic resistance, jasmonic acid mediated signaling pathway" evidence=IMP

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0009693 "ethylene biosynthetic process" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

UNIPROTKB|Q5MFV1 BIERF3 "BTH-induced ERF transcriptional factor 3" [Oryza sativa Indica Group (taxid:39946)]

 Score = 283 (104.7 bits), Expect = 7.6e-25, P = 7.6e-25
 Identities = 82/214 (38%), Positives = 111/214 (51%)

Query:     5 NMSESDLALLESIRQQLLEDDFEIFTTFPSETL-PIN-NNETLNSPVXXXXXXXXTENIN 62
             N +  ++A L+SIR  LLE++ E   T P+ T  P+   + +  S V            N
Sbjct:     4 NPASREVAALDSIRHHLLEEEEETPATAPAPTRRPVYCRSSSFGSLVADQWSESLPFRPN 63

Query:    63 EYLSQGVXXXXXXXLHDG--VNGGWISFDDQLGRNND---IGSAIANIDTS------MTS 111
             +     V          G   +G + +   +   + D   IGS +A+  +       +TS
Sbjct:    64 DAEDMVVYGALRDAFSSGWLPDGSFAAVKPESQDSYDGSSIGSFLASSSSEAGTPGEVTS 123

Query:   112 XXXXXXXXXXQMD---VA---RGTHVRMQYRGVRRRPWGKFAAEIRDPKKNGARVWLGTY 165
                       + +   VA   RG H    YRGVR+RPWGKFAAEIRDP KNGARVWLGT+
Sbjct:   124 TEATVTPGIREGEGEAVAVASRGKH----YRGVRQRPWGKFAAEIRDPAKNGARVWLGTF 179

Query:   166 DTPEGAAFAYDRAAFKMRGSKAKLNFPHLIGSNV 199
             D+ E AA AYDRAA++MRGS+A LNFP  IGS +
Sbjct:   180 DSAEEAAVAYDRAAYRMRGSRALLNFPLRIGSEI 213

GO:0009620 "response to fungus" evidence=IC

TAIR|locus:2176187 AT5G51190 [Arabidopsis thaliana (taxid:3702)]

 Score = 244 (91.0 bits), Expect = 7.9e-24, Sum P(2) = 7.9e-24
 Identities = 45/58 (77%), Positives = 49/58 (84%)

Query:   135 YRGVRRRPWGKFAAEIRDPKKNGARVWLGTYDTPEGAAFAYDRAAFKMRGSKAKLNFP 192
             YRGVRRRPWGK+AAEIRDP K G RVWLGT+DT   AA  YD+AAFK+RGSKA LNFP
Sbjct:    72 YRGVRRRPWGKYAAEIRDPNKKGVRVWLGTFDTAMEAARGYDKAAFKLRGSKAILNFP 129

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009612 "response to mechanical stimulus" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

TAIR|locus:2156171 AT5G61890 [Arabidopsis thaliana (taxid:3702)]

 Score = 249 (92.7 bits), Expect = 3.0e-21, P = 3.0e-21
 Identities = 49/69 (71%), Positives = 55/69 (79%)

Query:   132 RMQYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYDTPEGAAFAYDRAAFKMRGSKAKLNF 191
             R  YRGVR+RPWGK+AAEIRDPKK  ARVWLGT++T E AA AYD AA K +GSKAKLNF
Sbjct:    87 RRHYRGVRQRPWGKWAAEIRDPKK-AARVWLGTFETAESAALAYDEAALKFKGSKAKLNF 145

Query:   192 PHLI--GSN 198
             P  +  GSN
Sbjct:   146 PERVQLGSN 154

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0050832 "defense response to fungus" evidence=IEP

GO:0006865 "amino acid transport" evidence=RCA

TAIR|locus:2018289 ERF14 "Ethylene-responsive element binding factor 14" [Arabidopsis thaliana (taxid:3702)]

 Score = 247 (92.0 bits), Expect = 4.9e-21, P = 4.9e-21
 Identities = 45/60 (75%), Positives = 51/60 (85%)

Query:   134 QYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYDTPEGAAFAYDRAAFKMRGSKAKLNFPH 193
             +YRGVRRRPWGK+AAEIRD +K+G RVWLGT+DT E AA AYDRAA+ MRG  A LNFPH
Sbjct:    19 KYRGVRRRPWGKYAAEIRDSRKHGERVWLGTFDTAEDAARAYDRAAYSMRGKAAILNFPH 78

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0009873 "ethylene mediated signaling pathway" evidence=TAS

TAIR|locus:2086203 ESE1 "ethylene and salt inducible 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 247 (92.0 bits), Expect = 4.9e-21, P = 4.9e-21
 Identities = 45/61 (73%), Positives = 53/61 (86%)

Query:   133 MQYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYDTPEGAAFAYDRAAFKMRGSKAKLNFP 192
             M+YRGVR+RPWGK+AAEIRD  ++GARVWLGT++T E AA AYDRAAF MRG +A LNFP
Sbjct:    12 MKYRGVRKRPWGKYAAEIRDSARHGARVWLGTFNTAEDAARAYDRAAFGMRGQRAILNFP 71

Query:   193 H 193
             H
Sbjct:    72 H 72

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;ISS;TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0009873 "ethylene mediated signaling pathway" evidence=TAS

TAIR|locus:2171529 ERF5 "ethylene responsive element binding factor 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 246 (91.7 bits), Expect = 6.3e-21, P = 6.3e-21
 Identities = 46/65 (70%), Positives = 53/65 (81%)

Query:   132 RMQYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYDTPEGAAFAYDRAAFKMRGSKAKLNF 191
             +  YRGVR+RPWGKFAAEIRDP K G+RVWLGT+DT   AA AYD AAF++RGSKA LNF
Sbjct:   153 KKHYRGVRQRPWGKFAAEIRDPNKRGSRVWLGTFDTAIEAARAYDEAAFRLRGSKAILNF 212

Query:   192 PHLIG 196
             P  +G
Sbjct:   213 PLEVG 217

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;IC;TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;IDA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA;TAS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0009409 "response to cold" evidence=IEP

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

TAIR|locus:2151576 AT5G61590 [Arabidopsis thaliana (taxid:3702)]

 Score = 246 (91.7 bits), Expect = 6.3e-21, P = 6.3e-21
 Identities = 48/75 (64%), Positives = 56/75 (74%)

Query:   135 YRGVRRRPWGKFAAEIRDPKKNGARVWLGTYDTPEGAAFAYDRAAFKMRGSKAKLNFPHL 194
             YRGVRRRPWGKFAAEIRDP K G+R+WLGT+++   AA AYD AAFK+RG KA LNFP L
Sbjct:   107 YRGVRRRPWGKFAAEIRDPAKKGSRIWLGTFESDIDAARAYDYAAFKLRGRKAVLNFP-L 165

Query:   195 IGSNVEPPVRVTKKR 209
                  + PV   +KR
Sbjct:   166 DAGKYDAPVNSCRKR 180

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0009414 "response to water deprivation" evidence=IEP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	233
smart00380	64	smart00380, AP2, DNA-binding domain in plant prote	4e-35
cd00018	61	cd00018, AP2, DNA-binding domain found in transcri	1e-32
pfam00847	53	pfam00847, AP2, AP2 domain	3e-15

>gnl|CDD|197689 smart00380, AP2, DNA-binding domain in plant proteins such as APETALA2 and EREBPs

 Score =  118 bits (299), Expect = 4e-35
 Identities = 44/61 (72%), Positives = 50/61 (81%), Gaps = 1/61 (1%)

Query: 134 QYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYDTPEGAAFAYDRAAFKMRGSKAKLNFPH 193
           +YRGVR+RPWGK+ AEIRDP K G RVWLGT+DT E AA AYDRAAFK RG  A+LNFP+
Sbjct: 1   KYRGVRQRPWGKWVAEIRDPSK-GKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPN 59

Query: 194 L 194
            
Sbjct: 60  S 60

Length = 64

>gnl|CDD|237985 cd00018, AP2, DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

 Score =  112 bits (282), Expect = 1e-32
 Identities = 42/61 (68%), Positives = 48/61 (78%), Gaps = 1/61 (1%)

Query: 134 QYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYDTPEGAAFAYDRAAFKMRGSKAKLNFPH 193
           +YRGVR+RPWGK+ AEIRDP   G R+WLGT+DT E AA AYDRAA K+RGS A LNFP 
Sbjct: 2   KYRGVRQRPWGKWVAEIRDPSG-GRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFPD 60

Query: 194 L 194
            
Sbjct: 61  S 61

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies. Length = 61

>gnl|CDD|216148 pfam00847, AP2, AP2 domain

 Score = 67.3 bits (165), Expect = 3e-15
 Identities = 25/52 (48%), Positives = 31/52 (59%), Gaps = 3/52 (5%)

Query: 135 YRGVRRRP-WGKFAAEIRDPKKNGA-RVWLGTYDTPEGAAFAYDRAAFKMRG 184
           Y+GVR    WG++ AEIRDP +    R  LGT+ T E AA A   A  K+RG
Sbjct: 3   YKGVRYDKRWGRWVAEIRDPGEKKKKRFSLGTFGT-EEAARAAIAARLKLRG 53

This 60 amino acid residue domain can bind to DNA and is found in transcription factor proteins. Length = 53

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	233
cd00018	61	AP2 DNA-binding domain found in transcription regu	99.82
smart00380	64	AP2 DNA-binding domain in plant proteins such as A	99.79
PHA00280	121	putative NHN endonuclease	99.41
PF00847	56	AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-	99.17

>cd00018 AP2 DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

Probab=99.82  E-value=1.9e-20  Score=133.25  Aligned_cols=60  Identities=70%  Similarity=1.234  Sum_probs=56.1

Q ss_pred             CceEEeEECCCCcEEEEEeCCCCCCcEEeccCCCCHHHHHHHHHHHHHHhcCCCCCCCCCC
Q 047100          133 MQYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYDTPEGAAFAYDRAAFKMRGSKAKLNFPH  193 (233)
Q Consensus       133 S~YRGV~~r~~GKW~A~I~~~~~nGkrv~LGtFdT~EEAA~AYD~AA~~~~G~~A~lNFP~  193 (233)
                      |+|+||+++++|||+|+|+++.. |+++|||+|+|+||||.|||+|+++++|.++.+|||+
T Consensus         1 s~~~GV~~~~~gkw~A~I~~~~~-gk~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~   60 (61)
T cd00018           1 SKYRGVRQRPWGKWVAEIRDPSG-GRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFPD   60 (61)
T ss_pred             CCccCEEECCCCcEEEEEEeCCC-CceEccCCCCCHHHHHHHHHHHHHHhcCCccccCCCC
Confidence            68999998889999999999432 7999999999999999999999999999999999996

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies.

>smart00380 AP2 DNA-binding domain in plant proteins such as APETALA2 and EREBPs

Probab=99.79  E-value=3.3e-19  Score=128.50  Aligned_cols=60  Identities=73%  Similarity=1.293  Sum_probs=56.4

Q ss_pred             ceEEeEECCCCcEEEEEeCCCCCCcEEeccCCCCHHHHHHHHHHHHHHhcCCCCCCCCCCC
Q 047100          134 QYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYDTPEGAAFAYDRAAFKMRGSKAKLNFPHL  194 (233)
Q Consensus       134 ~YRGV~~r~~GKW~A~I~~~~~nGkrv~LGtFdT~EEAA~AYD~AA~~~~G~~A~lNFP~~  194 (233)
                      +|+||+++++|||+|+|+++.. |+++|||+|+|+||||.|||.|+++++|.++.+|||..
T Consensus         1 ~~kGV~~~~~gkw~A~I~~~~~-~k~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~   60 (64)
T smart00380        1 KYRGVRQRPWGKWVAEIRDPSK-GKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPNS   60 (64)
T ss_pred             CEeeEEeCCCCeEEEEEEecCC-CcEEecCCCCCHHHHHHHHHHHHHHhcCCccccCCCCc
Confidence            5999999889999999999764 78999999999999999999999999999999999985

>PHA00280 putative NHN endonuclease

Probab=99.41  E-value=4.4e-13  Score=109.25  Aligned_cols=58  Identities=14%  Similarity=0.186  Sum_probs=51.9

Q ss_pred             cCCCCCCceEEeEEC-CCCcEEEEEeCCCCCCcEEeccCCCCHHHHHHHHHHHHHHhcCCCCC
Q 047100          127 RGTHVRMQYRGVRRR-PWGKFAAEIRDPKKNGARVWLGTYDTPEGAAFAYDRAAFKMRGSKAK  188 (233)
Q Consensus       127 ~~~~~~S~YRGV~~r-~~GKW~A~I~~~~~nGkrv~LGtFdT~EEAA~AYD~AA~~~~G~~A~  188 (233)
                      ..+.++|+|+||++. ..|||+|+|++   +||+++||.|+++|+|+.||+ ++.++||.+|.
T Consensus        61 ~~~~N~SG~kGV~~~k~~~kw~A~I~~---~gK~~~lG~f~~~e~A~~a~~-~~~~lhGeFa~  119 (121)
T PHA00280         61 TPKSNTSGLKGLSWSKEREMWRGTVTA---EGKQHNFRSRDLLEVVAWIYR-TRRELHGQFAR  119 (121)
T ss_pred             CCCCCCCCCCeeEEecCCCeEEEEEEE---CCEEEEcCCCCCHHHHHHHHH-HHHHHhhcccc
Confidence            456789999999965 47999999999   999999999999999999997 77889999875

>PF00847 AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-related genes transcriptional activator binds to the GCC-box pathogenesis-related promoter element and activates the plant's defence genes

Probab=99.17  E-value=5.2e-11  Score=82.63  Aligned_cols=53  Identities=30%  Similarity=0.397  Sum_probs=45.9

Q ss_pred             CceEEeEECC-CCcEEEEEeCCCCCC--cEEeccCCCCHHHHHHHHHHHHHHhcCC
Q 047100          133 MQYRGVRRRP-WGKFAAEIRDPKKNG--ARVWLGTYDTPEGAAFAYDRAAFKMRGS  185 (233)
Q Consensus       133 S~YRGV~~r~-~GKW~A~I~~~~~nG--krv~LGtFdT~EEAA~AYD~AA~~~~G~  185 (233)
                      |+|+||++.+ .++|+|+|++...+|  ++++||.|++++||++||+.++..++|+
T Consensus         1 s~~~GV~~~~~~~~W~a~i~~~~~~g~~k~f~~g~fg~~~eA~~~a~~~r~~~~~e   56 (56)
T PF00847_consen    1 SGYKGVSWDKRRGRWRAQIRVWSENGKRKRFSVGKFGFEEEAKRAAIEARKELEGE   56 (56)
T ss_dssp             SSSTTEEEETTTTEEEEEEEECCCTTEEEEEEECCCCCHHHHHHHHHHHHHHCTS-
T ss_pred             CCcEEEEEcCCCCEEEEEEEEcccCcccEEEeCccCCCHHHHHHHHHHHHHHhcCC
Confidence            6899999554 799999999854444  8999999999999999999999999874

Ethylene, chemically the simplest plant hormone, participates in a number of stress responses and developmental processes: e.g., fruit ripening, inhibition of stem and root elongation, promotion of seed germination and flowering, senescence of leaves and flowers, and sex determination []. DNA sequence elements that confer ethylene responsiveness have been shown to contain two 11bp GCC boxes, which are necessary and sufficient for transcriptional control by ethylene. Ethylene responsive element binding proteins (EREBPs) have now been identified in a variety of plants. The proteins share a similar domain of around 59 amino acids, which interacts directly with the GCC box in the ERE.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3IGM_A 3GCC_A 1GCC_A 2GCC_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	233
2gcc_A	70	Solution Structure Of The Gcc-Box Binding Domain, N		8e-24
1gcc_A	63	Solution Nmr Structure Of The Complex Of Gcc-Box Bi		3e-23

>pdb|2GCC|A Chain A, Solution Structure Of The Gcc-Box Binding Domain, Nmr, Minimized Mean Structure Length = 70

Iteration: 1
 Score =  107 bits (266), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 52/72 (72%), Positives = 59/72 (81%), Gaps = 4/72 (5%)
Query: 126 ARGTHVRMQYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYDTPEGAAFAYDRAAFKMRGS 185
           A+G H    YRGVR+RPWGKFAAEIRDP KNGARVWLGT++T E AA AYDRAAF+MRGS
Sbjct: 1   AKGKH----YRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGS 56
Query: 186 KAKLNFPHLIGS 197
           +A LNFP  + S
Sbjct: 57  RALLNFPLRVNS 68

>pdb|1GCC|A Chain A, Solution Nmr Structure Of The Complex Of Gcc-Box Binding Domain Of Aterf1 And Gcc-Box Dna, Minimized Average Structure Length = 63

Iteration: 1
 Score =  105 bits (261), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 48/59 (81%), Positives = 53/59 (89%)
Query: 134 QYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYDTPEGAAFAYDRAAFKMRGSKAKLNFP 192
            YRGVR+RPWGKFAAEIRDP KNGARVWLGT++T E AA AYDRAAF+MRGS+A LNFP
Sbjct: 2   HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFP 60

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	233
1gcc_A	63	Ethylene responsive element binding factor 1; tran	1e-44

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A Length = 63

 Score =  142 bits (360), Expect = 1e-44
 Identities = 48/62 (77%), Positives = 54/62 (87%)

Query: 134 QYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYDTPEGAAFAYDRAAFKMRGSKAKLNFPH 193
            YRGVR+RPWGKFAAEIRDP KNGARVWLGT++T E AA AYDRAAF+MRGS+A LNFP 
Sbjct: 2   HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPL 61

Query: 194 LI 195
            +
Sbjct: 62  RV 63

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	233
1gcc_A	63	Ethylene responsive element binding factor 1; tran	99.92
3igm_B	77	PF14_0633 protein; AP2 domain, specific transcript	89.67
1u3e_M	174	HNH homing endonuclease; HNH catalytic motif, heli	80.04

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A

Probab=99.92  E-value=8.3e-26  Score=163.23  Aligned_cols=63  Identities=76%  Similarity=1.319  Sum_probs=60.0

Q ss_pred             CceEEeEECCCCcEEEEEeCCCCCCcEEeccCCCCHHHHHHHHHHHHHHhcCCCCCCCCCCCC
Q 047100          133 MQYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYDTPEGAAFAYDRAAFKMRGSKAKLNFPHLI  195 (233)
Q Consensus       133 S~YRGV~~r~~GKW~A~I~~~~~nGkrv~LGtFdT~EEAA~AYD~AA~~~~G~~A~lNFP~~i  195 (233)
                      .+||||+++++|||+|+|+++.++|+++|||+|+|+||||+|||.|+++++|.+|.+|||..|
T Consensus         1 ~~yrGV~~r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~~   63 (63)
T 1gcc_A            1 KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLRV   63 (63)
T ss_dssp             CCCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTTC
T ss_pred             CCcccEeeCCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCcC
Confidence            379999988899999999999888999999999999999999999999999999999999875

>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}

Probab=89.67  E-value=0.13  Score=38.43  Aligned_cols=28  Identities=25%  Similarity=0.310  Sum_probs=22.4

Q ss_pred             CCCCceEEeEECC-CCcEEEEEeCCCCCCcEE
Q 047100          130 HVRMQYRGVRRRP-WGKFAAEIRDPKKNGARV  160 (233)
Q Consensus       130 ~~~S~YRGV~~r~-~GKW~A~I~~~~~nGkrv  160 (233)
                      ...|+|.||++.+ .+.|.|+-.+   +|++.
T Consensus         3 ~~~Sg~pGVsw~kR~~~WlA~W~e---~g~rr   31 (77)
T 3igm_B            3 HMSSGYPGVSWNKRMCAWLAFFYD---GASRR   31 (77)
T ss_dssp             -CCSSSTTEEEETTTTEEEEEEEE---TTEEE
T ss_pred             CCCCCCCcEEeecCCceEEEEEec---CCeEe
Confidence            4689999999665 7999999998   66654

>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1

Probab=80.04  E-value=0.27  Score=40.04  Aligned_cols=38  Identities=8%  Similarity=-0.109  Sum_probs=28.7

Q ss_pred             eEEeEECCCCcEEEEEeCCCCCCcEEeccCCCCHHHHHHHHH
Q 047100          135 YRGVRRRPWGKFAAEIRDPKKNGARVWLGTYDTPEGAAFAYD  176 (233)
Q Consensus       135 YRGV~~r~~GKW~A~I~~~~~nGkrv~LGtFdT~EEAA~AYD  176 (233)
                      ++||.+...++|.+.|..   + +..+||.|++.+|||++|.
T Consensus       109 ~~g~~~~~~~k~~~vi~~---~-~~~~~~~f~s~~eAa~~~G  146 (174)
T 1u3e_M          109 SKAQQIAKIKNQKPIIVI---S-PDGIEKEYPSTKCACEELG  146 (174)
T ss_dssp             HHHHHHHHHHTCCCEEEE---C-TTSCEEEESCHHHHHHHHT
T ss_pred             eeeeeeccCCCCceEEEE---c-CCceEEeeCCHHHHHHHHC
Confidence            456654224568999988   4 4577999999999999974

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	233
d1gcca_	63	d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cr	2e-36

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 63

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  120 bits (304), Expect = 2e-36
 Identities = 48/62 (77%), Positives = 54/62 (87%)

Query: 134 QYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYDTPEGAAFAYDRAAFKMRGSKAKLNFPH 193
            YRGVR+RPWGKFAAEIRDP KNGARVWLGT++T E AA AYDRAAF+MRGS+A LNFP 
Sbjct: 2   HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPL 61

Query: 194 LI 195
            +
Sbjct: 62  RV 63

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	233
d1gcca_	63	GCC-box binding domain {Mouse-ear cress (Arabidops	99.92

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.92  E-value=2.2e-26  Score=165.17  Aligned_cols=63  Identities=76%  Similarity=1.319  Sum_probs=59.8

Q ss_pred             CceEEeEECCCCcEEEEEeCCCCCCcEEeccCCCCHHHHHHHHHHHHHHhcCCCCCCCCCCCC
Q 047100          133 MQYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYDTPEGAAFAYDRAAFKMRGSKAKLNFPHLI  195 (233)
Q Consensus       133 S~YRGV~~r~~GKW~A~I~~~~~nGkrv~LGtFdT~EEAA~AYD~AA~~~~G~~A~lNFP~~i  195 (233)
                      .+||||+++++|||+|+|+++.++++++|||+|+|+||||+|||+|+++++|.++.+|||.+|
T Consensus         1 ~~yrGVr~r~~gkw~A~Ir~~~~~~~r~~LGtf~t~eeAArAYD~aa~~~~G~~a~~NFP~~~   63 (63)
T d1gcca_           1 KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLRV   63 (63)
T ss_dssp             CCCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTTC
T ss_pred             CCcceEeECCCCCEEEEEecCCCCCcEeccccccCHHHHHHHHHHHHHHhcCCCcccCCCccC
Confidence            369999988899999999998888899999999999999999999999999999999999876