Citrus Sinensis ID: 047115
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 522 | 2.2.26 [Sep-21-2011] | |||||||
| Q07423 | 510 | Hexose carrier protein HE | N/A | no | 0.917 | 0.939 | 0.576 | 1e-167 | |
| Q8L7R8 | 514 | Sugar transport protein 3 | yes | no | 0.904 | 0.918 | 0.486 | 1e-122 | |
| O04249 | 513 | Sugar transport protein 7 | no | no | 0.906 | 0.922 | 0.428 | 1e-117 | |
| Q41144 | 523 | Sugar carrier protein C O | N/A | no | 0.911 | 0.910 | 0.453 | 1e-115 | |
| P23586 | 522 | Sugar transport protein 1 | no | no | 0.898 | 0.898 | 0.454 | 1e-115 | |
| Q94AZ2 | 526 | Sugar transport protein 1 | no | no | 0.896 | 0.889 | 0.438 | 1e-113 | |
| Q9SX48 | 517 | Sugar transport protein 9 | no | no | 0.915 | 0.924 | 0.439 | 1e-112 | |
| Q39228 | 514 | Sugar transport protein 4 | no | no | 0.888 | 0.902 | 0.460 | 1e-111 | |
| O65413 | 508 | Sugar transport protein 1 | no | no | 0.908 | 0.933 | 0.455 | 1e-111 | |
| Q9LT15 | 514 | Sugar transport protein 1 | no | no | 0.896 | 0.910 | 0.434 | 1e-109 |
| >sp|Q07423|HEX6_RICCO Hexose carrier protein HEX6 OS=Ricinus communis GN=HEX6 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 589 bits (1519), Expect = e-167, Method: Compositional matrix adjust.
Identities = 308/534 (57%), Positives = 381/534 (71%), Gaps = 55/534 (10%)
Query: 1 MTIFIVLSCIVAATSGLIFGYDIGVSGGVTLMEPFLKKCFLEVYKKMKEDPKISNYGKFD 60
MT F+ LSC++AA G+IFGYDIGVSGGVT M+PFLKK F +VY+KMKED +ISNY KFD
Sbjct: 18 MTSFVALSCMMAAMGGVIFGYDIGVSGGVTSMDPFLKKFFPDVYRKMKEDTEISNYCKFD 77
Query: 61 SQLLAAFTSSLYIAGLIAFLFASKVTRAFGRKASILPKFQGRNADAIGLQKTEKELSYKR 120
SQLL +FTSSLY+AGL+A FAS VTRAFGRK SIL
Sbjct: 78 SQLLTSFTSSLYVAGLVASFFASSVTRAFGRKPSIL------------------------ 113
Query: 121 IETNLEQCSCCSCCYSNHCSIGGAAFNIYMLILGCVLLGVGIGFTSQSIQRFNQFAYMIL 180
+ ++GGAA N+YMLI G VLLGVG+GF +Q++ +
Sbjct: 114 ---------LGGXVFLAXAALGGAAVNVYMLIFGRVLLGVGVGFANQAVPLY-------- 156
Query: 181 LSSNFETTRLSHIDFLLQISICYLILSANLLNYGTQKIKGSWGWRISLAMAAVPASILTI 240
LS I+ Q S+ LSANL+NYGT+KI+G WGWRISLAMAAVPA+ILT
Sbjct: 157 LSEMAPPRYRGAINNGFQFSVGIGALSANLINYGTEKIEGGWGWRISLAMAAVPAAILTF 216
Query: 241 GSLFLPETPNSIIQRNKDHQKAEEILQIVRNTTDVKAELDDIIRAS----------SKII 290
G+LFLPETPNS+IQR+ DH++A+ +LQ VR TTDV+AELDD+I+AS I+
Sbjct: 217 GALFLPETPNSLIQRSNDHERAKLMLQRVRGTTDVQAELDDLIKASIISRTIQHPFKNIM 276
Query: 291 HRIYRPQLVMAILIPF-QQVTRVNVISFNAPVLFMTIKVRKSTSLLMSAVVPDGIGTVST 349
R YRPQLVMA+ IPF QQVT +NVI+F AP+LF TI + +S SLL S++V +G+ ST
Sbjct: 277 RRKYRPQLVMAVAIPFFQQVTGINVIAFYAPILFRTIGLEESASLL-SSIVTGLVGSAST 335
Query: 350 ILPMILADKLGRTVLFLLGGIQILVSQVMIRSIMAAQLGDHGGFNIGYAYLILFLICVYK 409
+ M++ DKLGR LF+ GG+Q+ V+Q+M+ SIMAA+LGDHGG GYAY++L LIC+Y
Sbjct: 336 FISMLIVDKLGRRALFIFGGVQMFVAQIMVGSIMAAELGDHGGIGKGYAYIVLILICIYV 395
Query: 410 AGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLVAQTFLAMLCHFKAGVFFC 469
AGF +S GPLGWLVPSEIFPLEIRSAGQSI VAV LFTF+VAQTFL+MLCHFK+G+FF
Sbjct: 396 AGFGWSWGPLGWLVPSEIFPLEIRSAGQSIVVAVSFLFTFVVAQTFLSMLCHFKSGIFFF 455
Query: 470 FGGWVAFMTTFVHFFLPETKYMPIEFMDKVWREHWFWRKIVDD--VGEESKIQA 521
FGGWV MT FVHF LPETK +PIE MD VWR+HWFW+KI+ + E +K++A
Sbjct: 456 FGGWVVVMTAFVHFLLPETKKVPIEKMDIVWRDHWFWKKIIGEEAAEENNKMEA 509
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Active uptake of hexoses. Probable glucose/hydrogen symport. Ricinus communis (taxid: 3988) |
| >sp|Q8L7R8|STP3_ARATH Sugar transport protein 3 OS=Arabidopsis thaliana GN=STP3 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 440 bits (1132), Expect = e-122, Method: Compositional matrix adjust.
Identities = 261/536 (48%), Positives = 340/536 (63%), Gaps = 64/536 (11%)
Query: 1 MTIFIVLSCIVAATSGLIFGYDIGVSGGVTLMEPFLKKCFLEVYKKMKEDPKI-----SN 55
+T F+V SC++AA G+IFGYDIGVSGGV M PFLK+ F +VYK +ED + ++
Sbjct: 20 ITYFVVASCVMAAMGGVIFGYDIGVSGGVMSMGPFLKRFFPKVYKLQEEDRRRRGNSNNH 79
Query: 56 YGKFDSQLLAAFTSSLYIAGLIAFLFASKVTRAFGRKASILPKFQGRNADAIGLQKTEKE 115
Y F+SQLL +FTSSLY++GLIA L AS VTR++GRK SI
Sbjct: 80 YCLFNSQLLTSFTSSLYVSGLIATLLASSVTRSWGRKPSIF------------------- 120
Query: 116 LSYKRIETNLEQCSCCSCCYSNHCSIGGAAFNIYMLILGCVLLGVGIGFTSQSIQRFNQF 175
+ ++GG+A N+ MLI+ +LLGVG+GF +QS+ +
Sbjct: 121 --------------LGGVSFLAGAALGGSAQNVAMLIIARLLLGVGVGFANQSVPLY--- 163
Query: 176 AYMILLSSNFETTRLSHIDFLLQISICYLILSANLLNYGTQKIKGSWGWRISLAMAAVPA 235
LS I Q+ I LSAN++NY TQ IK GWRISLA AA+PA
Sbjct: 164 -----LSEMAPAKYRGAISNGFQLCIGIGFLSANVINYETQNIKH--GWRISLATAAIPA 216
Query: 236 SILTIGSLFLPETPNSIIQRNKDHQKAEEILQIVRNTTDVKAELDDIIRASS-------- 287
SILT+GSLFLPETPNSIIQ D K E +L+ VR T DV+ EL D++ ASS
Sbjct: 217 SILTLGSLFLPETPNSIIQTTGDVHKTELMLRRVRGTNDVQDELTDLVEASSGSDTDSNA 276
Query: 288 --KIIHRIYRPQLVMAILIPF-QQVTRVNVISFNAPVLFMTIKVRKSTSLLMSAVVPDGI 344
K++ R YRP+LVMA++IPF QQVT +NV++F APVL+ T+ +S SL MS +V +
Sbjct: 277 FLKLLQRKYRPELVMALVIPFFQQVTGINVVAFYAPVLYRTVGFGESGSL-MSTLVTGIV 335
Query: 345 GTVSTILPMILADKLGRTVLFLLGGIQILVSQVMIRSI-MAAQLGDHGGFNIGYAYLILF 403
GT ST+L M++ D++GR LFL+GG+Q+LVSQV I I M A + D G GY Y ++
Sbjct: 336 GTSSTLLSMLVVDRIGRKTLFLIGGLQMLVSQVTIGVIVMVADVHD-GVIKEGYGYAVVV 394
Query: 404 LICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLVAQTFLAMLCHFK 463
L+CVY AGF +S GPLGWLVPSEIFPLEIRS QS+TVAV +FTF VAQ+ MLC F+
Sbjct: 395 LVCVYVAGFGWSWGPLGWLVPSEIFPLEIRSVAQSVTVAVSFVFTFAVAQSAPPMLCKFR 454
Query: 464 AGVFFCFGGWVAFMTTFVHFFLPETKYMPIEFMDKVWREHWFWRKIVD--DVGEES 517
AG+FF +GGW+ MT V FLPETK +PIE + +W +HWFWR++ D+ E +
Sbjct: 455 AGIFFFYGGWLVVMTVAVQLFLPETKNVPIEKVVGLWEKHWFWRRMTSKRDIQETT 510
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Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Arabidopsis thaliana (taxid: 3702) |
| >sp|O04249|STP7_ARATH Sugar transport protein 7 OS=Arabidopsis thaliana GN=STP7 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 422 bits (1084), Expect = e-117, Method: Compositional matrix adjust.
Identities = 228/532 (42%), Positives = 332/532 (62%), Gaps = 59/532 (11%)
Query: 1 MTIFIVLSCIVAATSGLIFGYDIGVSGGVTLMEPFLKKCFLEVYKKMKEDPKISNYGKFD 60
+T +++++C+VAA G IFGYDIG+SGGVT M+ FL++ F VY+K K+ + SNY K+D
Sbjct: 23 VTSYVIIACLVAAIGGSIFGYDIGISGGVTSMDEFLEEFFHTVYEKKKQAHE-SNYCKYD 81
Query: 61 SQLLAAFTSSLYIAGLIAFLFASKVTRAFGRKASILPKFQGRNADAIGLQKTEKELSYKR 120
+Q LAAFTSSLY+AGL++ L AS +TR +GR+ASI+
Sbjct: 82 NQGLAAFTSSLYLAGLVSTLVASPITRNYGRRASIV------------------------ 117
Query: 121 IETNLEQCSCCSCCYSNHCSIGGAAFNIYMLILGCVLLGVGIGFTSQSIQRFNQFAYMIL 180
C + + A N+ ML+ G ++LGVGIGF +Q++ +
Sbjct: 118 ---------CGGISFLIGSGLNAGAVNLAMLLAGRIMLGVGIGFGNQAVPLY-------- 160
Query: 181 LSSNFETTRLSHIDFLLQISICYLILSANLLNYGTQKIKGSWGWRISLAMAAVPASILTI 240
LS T ++ + Q++ I +AN++NYGTQ++K WGWR+SL +AA PA ++T+
Sbjct: 161 LSEVAPTHLRGGLNMMFQLATTIGIFTANMVNYGTQQLK-PWGWRLSLGLAAFPALLMTL 219
Query: 241 GSLFLPETPNSIIQRNKDHQKAEEILQIVRNTTDVKAELDDIIRASS----------KII 290
G FLPETPNS+++R ++ +L +R T +V AEL D++ AS I+
Sbjct: 220 GGYFLPETPNSLVERGLT-ERGRRVLVKLRGTENVNAELQDMVDASELANSIKHPFRNIL 278
Query: 291 HRIYRPQLVMAILIP-FQQVTRVNVISFNAPVLFMTIKVRKSTSLLMSAVVPDGIGTVST 349
+ +RPQLVMAI +P FQ +T +N I F APVLF T+ + SL SA+ + +ST
Sbjct: 279 QKRHRPQLVMAICMPMFQILTGINSILFYAPVLFQTMGFGGNASLYSSALT-GAVLVLST 337
Query: 350 ILPMILADKLGRTVLFLLGGIQILVSQVMIRSIMAAQLGDHGGFNIGYAYLILFLICVYK 409
+ + L D+LGR L + GGIQ+++ QV++ I+ + GD+ + GY+ +++ IC++
Sbjct: 338 FISIGLVDRLGRRALLITGGIQMIICQVIVAVILGVKFGDNQELSKGYSVIVVIFICLFV 397
Query: 410 AGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLVAQTFLAMLCHFKAGVFFC 469
F +S GPLGW +PSEIFPLE RSAGQSITVAV+LLFTF++AQ FL +LC FK G+F
Sbjct: 398 VAFGWSWGPLGWTIPSEIFPLETRSAGQSITVAVNLLFTFIIAQAFLGLLCAFKFGIFLF 457
Query: 470 FGGWVAFMTTFVHFFLPETKYMPIEFMDKVWREHWFWRKIVDD---VGEESK 518
F GWV MT FV+F LPETK +PIE M +W +HWFW+K++ D + +ESK
Sbjct: 458 FAGWVTVMTIFVYFLLPETKGVPIEEMTLLWSKHWFWKKVLPDATNLEDESK 509
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Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q41144|STC_RICCO Sugar carrier protein C OS=Ricinus communis GN=STC PE=2 SV=1 | Back alignment and function description |
|---|
Score = 417 bits (1072), Expect = e-115, Method: Compositional matrix adjust.
Identities = 246/542 (45%), Positives = 330/542 (60%), Gaps = 66/542 (12%)
Query: 1 MTIFIVLSCIVAATSGLIFGYDIGVSGGVTLMEPFLKKCFLEVYKKMKEDPKISNYGKFD 60
+T+++ ++C+VAA GLIFGYDIG+SGGVT M+ FLKK F VY+K K D + Y ++D
Sbjct: 21 LTLYVTVTCVVAAMGGLIFGYDIGISGGVTSMDSFLKKFFPSVYRKKKADESSNQYCQYD 80
Query: 61 SQLLAAFTSSLYIAGLIAFLFASKVTRAFGRKASILPKFQGRNADAIGLQKTEKELSYKR 120
SQ L FTSSLY+A LIA L AS +TR FGRK S+L F G
Sbjct: 81 SQTLTMFTSSLYLAALIASLVASTITRKFGRKLSML--FGG------------------- 119
Query: 121 IETNLEQCSCCSCCYSNHCSIGGAAFNIYMLILGCVLLGVGIGFTSQSIQRFNQFAYMIL 180
+ I GAA ++MLILG +LLG GIGF +QS+ +
Sbjct: 120 ------------VLFCAGAIINGAAKAVWMLILGRILLGFGIGFANQSVPLY-------- 159
Query: 181 LSSNFETTRLSHIDFLLQISICYLILSANLLNYGTQKIKGSWGWRISLAMAAVPASILTI 240
LS ++ Q+SI IL AN+LNY KIKG WGWR+SL A VPA I+T+
Sbjct: 160 LSEMAPYKYRGALNIGFQLSITIGILVANVLNYFFAKIKGGWGWRLSLGGAMVPALIITV 219
Query: 241 GSLFLPETPNSIIQRNKDHQKAEEILQIVRNTTDVKAELDDIIRASS----------KII 290
GSL LP+TPNS+I+R + H++A L+ VR DV E D++ AS ++
Sbjct: 220 GSLVLPDTPNSMIERGQ-HEEARAHLKRVRGVEDVDEEFTDLVHASEDSKKVEHPWRNLL 278
Query: 291 HRIYRPQLVMAILIPF-QQVTRVNVISFNAPVLFMTIKVRKSTSLLMSAVVPDGIGTVST 349
R YRP L MAI IPF QQ+T +NVI F APVLF TI S + LMSAV+ + +T
Sbjct: 279 QRKYRPHLSMAIAIPFFQQLTGINVIMFYAPVLFDTIGF-GSDAALMSAVITGLVNVFAT 337
Query: 350 ILPMILADKLGRTVLFLLGGIQILVSQVMIRSIMAAQLGDHGG---FNIGYAYLILFLIC 406
++ + DK GR LFL GG+Q+L+ Q ++ + + A+ G G YA +++ IC
Sbjct: 338 MVSIYGVDKWGRRFLFLEGGVQMLICQAIVAACIGAKFGVDGAPGDLPQWYAVVVVLFIC 397
Query: 407 VYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLVAQTFLAMLCHFKAGV 466
+Y +GFA+S GPLGWLVPSEIFPLEIRSA QS+ V+V++ FTF+VAQ FL MLCH K G+
Sbjct: 398 IYVSGFAWSWGPLGWLVPSEIFPLEIRSAAQSVNVSVNMFFTFVVAQVFLIMLCHLKFGL 457
Query: 467 FFCFGGWVAFMTTFVHFFLPETKYMPIEFMDKVWREHWFW-RKIVD--------DVGEES 517
F F +V M+ FV++FLPETK +PIE M +VW++HW+W R +VD ++G+E
Sbjct: 458 FIFFSFFVLIMSIFVYYFLPETKGIPIEEMGQVWKQHWYWSRYVVDEDYPNGGLEMGKEG 517
Query: 518 KI 519
+I
Sbjct: 518 RI 519
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Ricinus communis (taxid: 3988) |
| >sp|P23586|STP1_ARATH Sugar transport protein 1 OS=Arabidopsis thaliana GN=STP1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 416 bits (1068), Expect = e-115, Method: Compositional matrix adjust.
Identities = 239/526 (45%), Positives = 322/526 (61%), Gaps = 57/526 (10%)
Query: 1 MTIFIVLSCIVAATSGLIFGYDIGVSGGVTLMEPFLKKCFLEVYKKMKEDPKISNYGKFD 60
+T F++ +C+VAA GLIFGYDIG+SGGVT M FLK+ F VY+K +ED + Y ++D
Sbjct: 19 LTPFVLFTCVVAAMGGLIFGYDIGISGGVTSMPSFLKRFFPSVYRKQQEDASTNQYCQYD 78
Query: 61 SQLLAAFTSSLYIAGLIAFLFASKVTRAFGRKASILPKFQGRNADAIGLQKTEKELSYKR 120
S L FTSSLY+A LI+ L AS VTR FGR+ S+L F G
Sbjct: 79 SPTLTMFTSSLYLAALISSLVASTVTRKFGRRLSML--FGG------------------- 117
Query: 121 IETNLEQCSCCSCCYSNHCSIGGAAFNIYMLILGCVLLGVGIGFTSQSIQRFNQFAYMIL 180
+ I G A +++MLI+G +LLG GIGF +Q++ +
Sbjct: 118 ------------ILFCAGALINGFAKHVWMLIVGRILLGFGIGFANQAVPLY-------- 157
Query: 181 LSSNFETTRLSHIDFLLQISICYLILSANLLNYGTQKIKGSWGWRISLAMAAVPASILTI 240
LS ++ Q+SI IL A +LNY KIKG WGWR+SL A VPA I+TI
Sbjct: 158 LSEMAPYKYRGALNIGFQLSITIGILVAEVLNYFFAKIKGGWGWRLSLGGAVVPALIITI 217
Query: 241 GSLFLPETPNSIIQRNKDHQKAEEILQIVRNTTDVKAELDDIIRASSK----------II 290
GSL LP+TPNS+I+R + H++A+ L+ +R DV E DD++ AS + ++
Sbjct: 218 GSLVLPDTPNSMIERGQ-HEEAKTKLRRIRGVDDVSQEFDDLVAASKESQSIEHPWRNLL 276
Query: 291 HRIYRPQLVMAILIPF-QQVTRVNVISFNAPVLFMTIKVRKSTSLLMSAVVPDGIGTVST 349
R YRP L MA++IPF QQ+T +NVI F APVLF TI SL MSAVV + +T
Sbjct: 277 RRKYRPHLTMAVMIPFFQQLTGINVIMFYAPVLFNTIGFTTDASL-MSAVVTGSVNVAAT 335
Query: 350 ILPMILADKLGRTVLFLLGGIQILVSQVMIRSIMAAQLG---DHGGFNIGYAYLILFLIC 406
++ + D+ GR LFL GG Q+L+ Q ++ + + A+ G G YA +++ IC
Sbjct: 336 LVSIYGVDRWGRRFLFLEGGTQMLICQAVVAACIGAKFGVDGTPGELPKWYAIVVVTFIC 395
Query: 407 VYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLVAQTFLAMLCHFKAGV 466
+Y AGFA+S GPLGWLVPSEIFPLEIRSA QSITV+V+++FTF++AQ FL MLCH K G+
Sbjct: 396 IYVAGFAWSWGPLGWLVPSEIFPLEIRSAAQSITVSVNMIFTFIIAQIFLTMLCHLKFGL 455
Query: 467 FFCFGGWVAFMTTFVHFFLPETKYMPIEFMDKVWREHWFWRKIVDD 512
F F +V M+ FV+ FLPETK +PIE M +VWR HW+W + V+D
Sbjct: 456 FLVFAFFVVVMSIFVYIFLPETKGIPIEEMGQVWRSHWYWSRFVED 501
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Major hexose transporter. Mediates an active uptake of hexoses, by sugar/hydrogen symport. Can transport glucose, 3-O-methylglucose, fructose, xylose, mannose, galactose, fucose, 2-deoxyglucose and arabinose. Confers sensitivity to galactose in seedlings. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q94AZ2|STP13_ARATH Sugar transport protein 13 OS=Arabidopsis thaliana GN=STP13 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 409 bits (1051), Expect = e-113, Method: Compositional matrix adjust.
Identities = 231/527 (43%), Positives = 321/527 (60%), Gaps = 59/527 (11%)
Query: 1 MTIFIVLSCIVAATSGLIFGYDIGVSGGVTLMEPFLKKCFLEVYKKMKEDP-KISNYGKF 59
+T +++SCI+AAT GL+FGYD+GVSGGVT M FL+K F VY+K+ K SNY K+
Sbjct: 19 ITPIVIISCIMAATGGLMFGYDVGVSGGVTSMPDFLEKFFPVVYRKVVAGADKDSNYCKY 78
Query: 60 DSQLLAAFTSSLYIAGLIAFLFASKVTRAFGRKASILPKFQGRNADAIGLQKTEKELSYK 119
D+Q L FTSSLY+AGL A FAS TR GR+ ++L
Sbjct: 79 DNQGLQLFTSSLYLAGLTATFFASYTTRTLGRRLTML----------------------- 115
Query: 120 RIETNLEQCSCCSCCYSNHCSIGGAAFNIYMLILGCVLLGVGIGFTSQSIQRFNQFAYMI 179
+ ++ A ++ MLI G +LLG G+GF +Q++ F
Sbjct: 116 ----------IAGVFFIIGVALNAGAQDLAMLIAGRILLGCGVGFANQAVPLF------- 158
Query: 180 LLSSNFETTRLSHIDFLLQISICYLILSANLLNYGTQKIKGSWGWRISLAMAAVPASILT 239
LS T ++ L Q+++ IL ANL+NYGT KIKG WGWR+SL +A +PA +LT
Sbjct: 159 -LSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTAKIKGGWGWRLSLGLAGIPALLLT 217
Query: 240 IGSLFLPETPNSIIQRNK-DHQKAEEILQIVRNTTDVKAELDDIIRASS----------K 288
+G+L + ETPNS+++R + D KA +L+ +R T +V+ E D++ AS
Sbjct: 218 VGALLVTETPNSLVERGRLDEGKA--VLRRIRGTDNVEPEFADLLEASRLAKEVKHPFRN 275
Query: 289 IIHRIYRPQLVMAILIP-FQQVTRVNVISFNAPVLFMTIKVRKSTSLLMSAVVPDGIGTV 347
++ R RPQLV+A+ + FQQ T +N I F APVLF T+ SL SAVV + +
Sbjct: 276 LLQRRNRPQLVIAVALQIFQQCTGINAIMFYAPVLFSTLGFGSDASL-YSAVVTGAVNVL 334
Query: 348 STILPMILADKLGRTVLFLLGGIQILVSQVMIRSIMAAQLGDHG-GFNIGYAYLILFLIC 406
ST++ + DK+GR VL L G+Q+ SQV+I I+ ++ D + G+A L++ +IC
Sbjct: 335 STLVSIYSVDKVGRRVLLLEAGVQMFFSQVVIAIILGVKVTDTSTNLSKGFAILVVVMIC 394
Query: 407 VYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLVAQTFLAMLCHFKAGV 466
Y A FA+S GPLGWL+PSE FPLE RSAGQS+TV V+LLFTF++AQ FL+MLCHFK G+
Sbjct: 395 TYVAAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFIIAQAFLSMLCHFKFGI 454
Query: 467 FFCFGGWVAFMTTFVHFFLPETKYMPIEFM-DKVWREHWFWRKIVDD 512
F F WV M+ FV F LPETK +PIE M ++VW++HWFW + +DD
Sbjct: 455 FIFFSAWVLIMSVFVMFLLPETKNIPIEEMTERVWKKHWFWARFMDD 501
|
Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SX48|STP9_ARATH Sugar transport protein 9 OS=Arabidopsis thaliana GN=STP9 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 404 bits (1039), Expect = e-112, Method: Compositional matrix adjust.
Identities = 238/541 (43%), Positives = 328/541 (60%), Gaps = 63/541 (11%)
Query: 1 MTIFIVLSCIVAATSGLIFGYDIGVSGGVTLMEPFLKKCFLEVYKKMKEDPKISNYGKFD 60
+T+F++++CIVAA GL+FGYD+G+SGGVT ME FL K F EV K+M E + + Y KFD
Sbjct: 21 VTVFVIMTCIVAAMGGLLFGYDLGISGGVTSMEEFLSKFFPEVDKQMHEARRETAYCKFD 80
Query: 61 SQLLAAFTSSLYIAGLIAFLFASKVTRAFGRKASILPKFQGRNADAIGLQKTEKELSYKR 120
+QLL FTSSLY+A L + AS VTR +GRK S+ F G A IG
Sbjct: 81 NQLLQLFTSSLYLAALASSFVASAVTRKYGRKISM---FVGGVAFLIG------------ 125
Query: 121 IETNLEQCSCCSCCYSNHCSIGGAAFNIYMLILGCVLLGVGIGFTSQSIQRFNQFAYMIL 180
A N+ MLI+G +LLGVG+GF +QS +
Sbjct: 126 ------------------SLFNAFATNVAMLIVGRLLLGVGVGFANQSTP--------VY 159
Query: 181 LSSNFETTRLSHIDFLLQISICYLILSANLLNYGTQKIKGSWGWRISLAMAAVPASILTI 240
LS ++ Q++I IL ANL+NYGT ++ + GWR+SL +AAVPA I+ I
Sbjct: 160 LSEMAPAKIRGALNIGFQMAITIGILIANLINYGTSQMAKN-GWRVSLGLAAVPAVIMVI 218
Query: 241 GSLFLPETPNSIIQRNKDHQKAEEILQIVRNTTDVKAELDDII---RASSKIIH------ 291
GS LP+TPNS+++R K +++A E+LQ +R +V E D+ A+ K+ +
Sbjct: 219 GSFVLPDTPNSMLERGK-YEQAREMLQKIRGADNVDEEFQDLCDACEAAKKVDNPWKNIF 277
Query: 292 --RIYRPQLVMAILIPF-QQVTRVNVISFNAPVLFMTIKVRKSTSLLMSAVVPDGIGTVS 348
YRP LV IPF QQ+T +NVI F APVLF T+ SL+ SAV+ + VS
Sbjct: 278 QQAKYRPALVFCSAIPFFQQITGINVIMFYAPVLFKTLGFADDASLI-SAVITGAVNVVS 336
Query: 349 TILPMILADKLGRTVLFLLGGIQILVSQVMIRSIMAAQLGDHGGFNI--GYAYLILFLIC 406
T++ + D+ GR +LFL GGIQ++VSQ+++ +++ + G G + A IL IC
Sbjct: 337 TLVSIYAVDRYGRRILFLEGGIQMIVSQIVVGTLIGMKFGTTGSGTLTPATADWILAFIC 396
Query: 407 VYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLVAQTFLAMLCHFKAGV 466
+Y AGFA+S GPLGWLVPSEI PLEIR AGQ+I V+V++ FTFL+ Q FL MLCH K G+
Sbjct: 397 LYVAGFAWSWGPLGWLVPSEICPLEIRPAGQAINVSVNMFFTFLIGQFFLTMLCHMKFGL 456
Query: 467 FFCFGGWVAFMTTFVHFFLPETKYMPIEFMDKVWREHWFWRKIVDDV-----GEESKIQA 521
F+ FGG VA MT F++F LPETK +PIE M +VW++H FW++ + D GEE+ ++
Sbjct: 457 FYFFGGMVAVMTVFIYFLLPETKGVPIEEMGRVWKQHPFWKRYMPDDAVIGGGEENYVKE 516
Query: 522 V 522
V
Sbjct: 517 V 517
|
Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Mostly transports glucose, and barely galactose, xylose and mannose. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q39228|STP4_ARATH Sugar transport protein 4 OS=Arabidopsis thaliana GN=STP4 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 403 bits (1036), Expect = e-111, Method: Compositional matrix adjust.
Identities = 240/521 (46%), Positives = 323/521 (61%), Gaps = 57/521 (10%)
Query: 5 IVLSCIVAATSGLIFGYDIGVSGGVTLMEPFLKKCFLEVYKKMKEDPKISNYGKFDSQLL 64
+ ++C + A GLIFGYD+G+SGGVT MEPFL++ F VYKKMK + + Y +FDSQLL
Sbjct: 23 VFVTCFIGAFGGLIFGYDLGISGGVTSMEPFLEEFFPYVYKKMKSAHE-NEYCRFDSQLL 81
Query: 65 AAFTSSLYIAGLIAFLFASKVTRAFGRKASILPKFQGRNADAIGLQKTEKELSYKRIETN 124
FTSSLY+A L++ LFAS +TR FGRK S+ F G IG
Sbjct: 82 TLFTSSLYVAALVSSLFASTITRVFGRKWSM---FLGGFTFFIG---------------- 122
Query: 125 LEQCSCCSCCYSNHCSIGGAAFNIYMLILGCVLLGVGIGFTSQSIQRFNQFAYMILLSSN 184
+ G A NI ML++G +LLG G+GF +QS+ + LS
Sbjct: 123 --------------SAFNGFAQNIAMLLIGRILLGFGVGFANQSVP--------VYLSEM 160
Query: 185 FETTRLSHIDFLLQISICYLILSANLLNYGTQKIKGSWGWRISLAMAAVPASILTIGSLF 244
+ Q++I + I+ A ++NY T ++KG+ GWRISL +A VPA ++ IG+L
Sbjct: 161 APPNLRGAFNNGFQVAIIFGIVVATIINYFTAQMKGNIGWRISLGLACVPAVMIMIGALI 220
Query: 245 LPETPNSIIQRNKDHQKAEEILQIVRNTTDVKAELDDIIRASSK----------IIHRIY 294
LP+TPNS+I+R ++A+E+LQ +R T +V E D+I AS + I+ Y
Sbjct: 221 LPDTPNSLIERGYT-EEAKEMLQSIRGTNEVDEEFQDLIDASEESKQVKHPWKNIMLPRY 279
Query: 295 RPQLVMAILIPF-QQVTRVNVISFNAPVLFMTIKVRKSTSLLMSAVVPDGIGTVSTILPM 353
RPQL+M IPF QQ+T +NVI+F APVLF T+ SLL SA+V I + T + +
Sbjct: 280 RPQLIMTCFIPFFQQLTGINVITFYAPVLFQTLGFGSKASLL-SAMVTGIIELLCTFVSV 338
Query: 354 ILADKLGRTVLFLLGGIQILVSQVMIRSIMAAQLGDHGGFNIGY--AYLILFLICVYKAG 411
D+ GR +LFL GGIQ+LVSQ+ I +++ + G G NIG A LI+ LIC+Y AG
Sbjct: 339 FTVDRFGRRILFLQGGIQMLVSQIAIGAMIGVKFGVAGTGNIGKSDANLIVALICIYVAG 398
Query: 412 FAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLVAQTFLAMLCHFKAGVFFCFG 471
FA+S GPLGWLVPSEI PLEIRSA Q+I V+V++ FTFLVAQ FL MLCH K G+FF F
Sbjct: 399 FAWSWGPLGWLVPSEISPLEIRSAAQAINVSVNMFFTFLVAQLFLTMLCHMKFGLFFFFA 458
Query: 472 GWVAFMTTFVHFFLPETKYMPIEFMDKVWREHWFWRKIVDD 512
+V MT F++ LPETK +PIE M++VW+ HWFW K + D
Sbjct: 459 FFVVIMTIFIYLMLPETKNVPIEEMNRVWKAHWFWGKFIPD 499
|
Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Can transport glucose, methylglucose, galactose, xylose and mannose, but not fructose. Arabidopsis thaliana (taxid: 3702) |
| >sp|O65413|STP12_ARATH Sugar transport protein 12 OS=Arabidopsis thaliana GN=STP12 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 402 bits (1032), Expect = e-111, Method: Compositional matrix adjust.
Identities = 243/533 (45%), Positives = 325/533 (60%), Gaps = 59/533 (11%)
Query: 1 MTIFIVLSCIVAATSGLIFGYDIGVSGGVTLMEPFLKKCFLEVYKKMKEDPKISNYGKFD 60
+T+++ ++CIVAA GLIFGYDIG+SGGVT M+ F +K F VY+K K+D + Y +FD
Sbjct: 19 LTLYVTVTCIVAAMGGLIFGYDIGISGGVTTMDSFQQKFFPSVYEKQKKDHDSNQYCRFD 78
Query: 61 SQLLAAFTSSLYIAGLIAFLFASKVTRAFGRKASILPKFQGRNADAIGLQKTEKELSYKR 120
S L FTSSLY+A L + L AS VTR FGRK S+L
Sbjct: 79 SVSLTLFTSSLYLAALCSSLVASYVTRQFGRKISML------------------------ 114
Query: 121 IETNLEQCSCCSCCYSNHCSIGGAAFNIYMLILGCVLLGVGIGFTSQSIQRFNQFAYMIL 180
L C+ N G A ++MLI+G +LLG GIGFT+QS+ +
Sbjct: 115 ----LGGVLFCAGALLN-----GFATAVWMLIVGRLLLGFGIGFTNQSVPLY-------- 157
Query: 181 LSSNFETTRLSHIDFLLQISICYLILSANLLNYGTQKIKGSWGWRISLAMAAVPASILTI 240
LS ++ Q+SI IL AN+LN+ KI SWGWR+SL A VPA I+T+
Sbjct: 158 LSEMAPYKYRGALNIGFQLSITIGILVANVLNFFFSKI--SWGWRLSLGGAVVPALIITV 215
Query: 241 GSLFLPETPNSIIQRNKDHQKAEEILQIVRNTTDVKAELDDIIRASS----------KII 290
GSL LP+TPNS+I+R + + AE L+ +R D+ E++D+I AS ++
Sbjct: 216 GSLILPDTPNSMIERGQ-FRLAEAKLRKIRGVDDIDDEINDLIIASEASKLVEHPWRNLL 274
Query: 291 HRIYRPQLVMAILIP-FQQVTRVNVISFNAPVLFMTIKVRKSTSLLMSAVVPDGIGTVST 349
R YRP L MAILIP FQQ+T +NVI F APVLF TI S + L+SAVV + +T
Sbjct: 275 QRKYRPHLTMAILIPAFQQLTGINVIMFYAPVLFQTIGF-GSDAALISAVVTGLVNVGAT 333
Query: 350 ILPMILADKLGRTVLFLLGGIQILVSQVMIRSIMAAQLGDHGGFNI---GYAYLILFLIC 406
++ + DK GR LFL GG Q+L+SQV + + + A+ G G + YA +++ IC
Sbjct: 334 VVSIYGVDKWGRRFLFLEGGFQMLISQVAVAAAIGAKFGVDGTPGVLPKWYAIVVVLFIC 393
Query: 407 VYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLVAQTFLAMLCHFKAGV 466
+Y A FA+S GPLGWLVPSEIFPLEIRSA QSITV+V+++FTFL+AQ FL MLCH K G+
Sbjct: 394 IYVAAFAWSWGPLGWLVPSEIFPLEIRSAAQSITVSVNMIFTFLIAQVFLMMLCHLKFGL 453
Query: 467 FFCFGGWVAFMTTFVHFFLPETKYMPIEFMDKVWREHWFWRKIVDDVGEESKI 519
F F +V M+ FV+ FLPET+ +PIE M++VWR HW+W K VD +K+
Sbjct: 454 FIFFAFFVVVMSIFVYLFLPETRGVPIEEMNRVWRSHWYWSKFVDAEKNLTKV 506
|
Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LT15|STP10_ARATH Sugar transport protein 10 OS=Arabidopsis thaliana GN=STP10 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 396 bits (1017), Expect = e-109, Method: Compositional matrix adjust.
Identities = 228/525 (43%), Positives = 314/525 (59%), Gaps = 57/525 (10%)
Query: 1 MTIFIVLSCIVAATSGLIFGYDIGVSGGVTLMEPFLKKCFLEVYKKMKEDPKISNYGKFD 60
+T F++++CIVAA GL+FGYD+G+SGGVT ME FL K F +V +MK+ + Y KFD
Sbjct: 21 VTAFVIMTCIVAAMGGLLFGYDLGISGGVTSMEEFLTKFFPQVESQMKKAKHDTAYCKFD 80
Query: 61 SQLLAAFTSSLYIAGLIAFLFASKVTRAFGRKASILPKFQGRNADAIGLQKTEKELSYKR 120
+Q+L FTSSLY+A L+A AS +TR GRK S+ F G A IG
Sbjct: 81 NQMLQLFTSSLYLAALVASFMASVITRKHGRKVSM---FIGGLAFLIG------------ 125
Query: 121 IETNLEQCSCCSCCYSNHCSIGGAAFNIYMLILGCVLLGVGIGFTSQSIQRFNQFAYMIL 180
A N+ MLI+G +LLGVG+GF +QS +
Sbjct: 126 ------------------ALFNAFAVNVSMLIIGRLLLGVGVGFANQSTP--------VY 159
Query: 181 LSSNFETTRLSHIDFLLQISICYLILSANLLNYGTQKIKGSWGWRISLAMAAVPASILTI 240
LS ++ Q++I IL ANL+NYGT K+ GWR+SL +AAVPA ++ I
Sbjct: 160 LSEMAPAKIRGALNIGFQMAITIGILVANLINYGTSKM-AQHGWRVSLGLAAVPAVVMVI 218
Query: 241 GSLFLPETPNSIIQRNKDHQKAEEILQIVRNTTDVKAELDDIIRASS----------KII 290
GS LP+TPNS+++R K+ ++A+++L+ +R +V E D+I A I+
Sbjct: 219 GSFILPDTPNSMLERGKN-EEAKQMLKKIRGADNVDHEFQDLIDAVEAAKKVENPWKNIM 277
Query: 291 HRIYRPQLVMAILIPF-QQVTRVNVISFNAPVLFMTIKVRKSTSLLMSAVVPDGIGTVST 349
YRP L+ IPF QQ+T +NVI F APVLF T+ +L MSAV+ + +ST
Sbjct: 278 ESKYRPALIFCSAIPFFQQITGINVIMFYAPVLFKTLGFGDDAAL-MSAVITGVVNMLST 336
Query: 350 ILPMILADKLGRTVLFLLGGIQILVSQVMIRSIMAAQLGDHGGFNI--GYAYLILFLICV 407
+ + D+ GR +LFL GGIQ+ + Q+++ S + A+ G G + A IL ICV
Sbjct: 337 FVSIYAVDRYGRRLLFLEGGIQMFICQLLVGSFIGARFGTSGTGTLTPATADWILAFICV 396
Query: 408 YKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLVAQTFLAMLCHFKAGVF 467
Y AGFA+S GPLGWLVPSEI PLEIR AGQ+I V+V++ FTFL+ Q FL MLCH K G+F
Sbjct: 397 YVAGFAWSWGPLGWLVPSEICPLEIRPAGQAINVSVNMFFTFLIGQFFLTMLCHMKFGLF 456
Query: 468 FCFGGWVAFMTTFVHFFLPETKYMPIEFMDKVWREHWFWRKIVDD 512
+ F VA MT F++F LPETK +PIE M +VW++HWFW+K + +
Sbjct: 457 YFFASMVAIMTVFIYFLLPETKGVPIEEMGRVWKQHWFWKKYIPE 501
|
Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 522 | ||||||
| 224129904 | 516 | predicted protein [Populus trichocarpa] | 0.931 | 0.941 | 0.572 | 1e-168 | |
| 47078687 | 508 | putative hexose transporter [Vitis vinif | 0.915 | 0.940 | 0.585 | 1e-167 | |
| 225466031 | 508 | PREDICTED: hexose carrier protein HEX6 [ | 0.915 | 0.940 | 0.585 | 1e-166 | |
| 147816021 | 508 | hypothetical protein VITISV_025873 [Viti | 0.915 | 0.940 | 0.583 | 1e-166 | |
| 255539853 | 510 | sugar transporter, putative [Ricinus com | 0.917 | 0.939 | 0.576 | 1e-166 | |
| 1708191 | 510 | RecName: Full=Hexose carrier protein HEX | 0.917 | 0.939 | 0.576 | 1e-165 | |
| 357455795 | 509 | Hexose carrier [Medicago truncatula] gi| | 0.900 | 0.923 | 0.596 | 1e-163 | |
| 356515367 | 510 | PREDICTED: hexose carrier protein HEX6-l | 0.906 | 0.927 | 0.554 | 1e-158 | |
| 224139190 | 509 | predicted protein [Populus trichocarpa] | 0.917 | 0.941 | 0.584 | 1e-158 | |
| 357455797 | 510 | Hexose carrier protein HEX6 [Medicago tr | 0.906 | 0.927 | 0.555 | 1e-157 |
| >gi|224129904|ref|XP_002328832.1| predicted protein [Populus trichocarpa] gi|222839130|gb|EEE77481.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 598 bits (1541), Expect = e-168, Method: Compositional matrix adjust.
Identities = 304/531 (57%), Positives = 379/531 (71%), Gaps = 45/531 (8%)
Query: 1 MTIFIVLSCIVAATSGLIFGYDIGVSGGVTLMEPFLKKCFLEVYKKMKEDPKISNYGKFD 60
MT F+ LSC++A+ G+IFGYDIG+SGGVT MEPFLKK F EVY +MKED KISNY KFD
Sbjct: 18 MTWFVALSCMMASMGGVIFGYDIGISGGVTSMEPFLKKFFPEVYARMKEDTKISNYCKFD 77
Query: 61 SQLLAAFTSSLYIAGLIAFLFASKVTRAFGRKASILPKFQGRNADAIGLQKTEKELSYKR 120
SQLL +FTSSLY+AGL+A FAS +TR FGRK SIL
Sbjct: 78 SQLLTSFTSSLYVAGLVASFFASSITRYFGRKPSIL------------------------ 113
Query: 121 IETNLEQCSCCSCCYSNHCSIGGAAFNIYMLILGCVLLGVGIGFTSQSIQRFNQFAYMIL 180
+ + ++ GAA N+YMLI G VLLGVG+GF +Q+ + A +
Sbjct: 114 ---------AGGAAFLSGSALNGAATNLYMLIFGRVLLGVGVGFANQAGAEPRR-AVPLY 163
Query: 181 LSSNFETTRLSHIDFLLQISICYLILSANLLNYGTQKIKGSWGWRISLAMAAVPASILTI 240
LS I+ Q+ I +LSAN +N+GT+KI+G WGWRISLAM A+PA+ LTI
Sbjct: 164 LSEMAPPRYRGAINNGFQLCIAIGVLSANFINFGTEKIEGGWGWRISLAMGAIPATFLTI 223
Query: 241 GSLFLPETPNSIIQRNKDHQKAEEILQIVRNTTDVKAELDDIIRAS----------SKII 290
GSLFLPETPNS+IQR D QKA+ +LQ +R TTDV+AE +D+I+AS KII
Sbjct: 224 GSLFLPETPNSLIQRFNDEQKAKTMLQRIRGTTDVEAEFNDLIKASLVSKSIEHPIKKII 283
Query: 291 HRIYRPQLVMAILIPF-QQVTRVNVISFNAPVLFMTIKVRKSTSLLMSAVVPDGIGTVST 349
+ YRPQLVMAI IPF QQVT +NVISF AP+LF TI + +S SL+MSA++ +GT ST
Sbjct: 284 QKKYRPQLVMAIAIPFFQQVTGINVISFYAPILFRTIGLSESVSLIMSALIAGVVGTAST 343
Query: 350 ILPMILADKLGRTVLFLLGGIQILVSQVMIRSIMAAQLGDHGGFNIGYAYLILFLICVYK 409
L M++ DKLGR V+ + GG+Q+ VSQ+MI SIMAAQLGDHG N GYAY +L +I +Y
Sbjct: 344 FLSMLVVDKLGRRVMLICGGVQMFVSQIMIGSIMAAQLGDHGSINKGYAYFVLTMISIYV 403
Query: 410 AGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLVAQTFLAMLCHFKAGVFFC 469
+GFA+S GPLGWLVPSEIFPLEIRS GQSI VAV+ +FTF+VAQTFLAMLCHFK+G+FF
Sbjct: 404 SGFAWSWGPLGWLVPSEIFPLEIRSVGQSIVVAVNFVFTFIVAQTFLAMLCHFKSGIFFF 463
Query: 470 FGGWVAFMTTFVHFFLPETKYMPIEFMDKVWREHWFWRKIVDDVGEESKIQ 520
FGGWVA MT FV+ LPETK +PIE MD+VWREHWFW++IV++ ++SK++
Sbjct: 464 FGGWVAVMTAFVYLLLPETKKVPIEVMDRVWREHWFWKRIVEEFDDKSKME 514
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|47078687|gb|AAT09978.1| putative hexose transporter [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 593 bits (1528), Expect = e-167, Method: Compositional matrix adjust.
Identities = 311/531 (58%), Positives = 384/531 (72%), Gaps = 53/531 (9%)
Query: 1 MTIFIVLSCIVAATSGLIFGYDIGVSGGVTLMEPFLKKCFLEVYKKMKEDPKISNYGKFD 60
+T+F+VLSC++A G+IFGYDIG+SGGVT M+ FLKK F EVYK+MKED KISNY KFD
Sbjct: 18 ITLFVVLSCMMAGMGGVIFGYDIGISGGVTSMDSFLKKFFPEVYKRMKEDTKISNYCKFD 77
Query: 61 SQLLAAFTSSLYIAGLIAFLFASKVTRAFGRKASILPKFQGRNADAIGLQKTEKELSYKR 120
SQLL +FTSSLYIAGL+A AS +T+ FGRK +IL G A IG
Sbjct: 78 SQLLTSFTSSLYIAGLVASFVASWITKKFGRKPTIL---AGGAAFLIG------------ 122
Query: 121 IETNLEQCSCCSCCYSNHCSIGGAAFNIYMLILGCVLLGVGIGFTSQSIQRFNQFAYMIL 180
++GGAAFN+YM+ILG +LLGVG+GF +Q++ +
Sbjct: 123 ------------------SALGGAAFNVYMVILGRILLGVGVGFANQAVPLY-------- 156
Query: 181 LSSNFETTRLSHIDFLLQISICYLILSANLLNYGTQKIKGSWGWRISLAMAAVPASILTI 240
LS I+ Q SI LSANL+N+GT+KIKG WGWR+SLA+AAVPASILT+
Sbjct: 157 LSEMAPPRYRGAINNGFQFSIGVGALSANLINFGTEKIKGGWGWRVSLALAAVPASILTL 216
Query: 241 GSLFLPETPNSIIQRNKDHQKAEEILQIVRNTTDVKAELDDIIRASS----------KII 290
G+LFLPETPNS+IQR+KD+ KAE +LQ VR T DV+AELDD+++ASS KI+
Sbjct: 217 GALFLPETPNSLIQRSKDYGKAELMLQRVRGTNDVQAELDDLVKASSLAKTINDPFKKIL 276
Query: 291 HRIYRPQLVMAILIPF-QQVTRVNVISFNAPVLFMTIKVRKSTSLLMSAVVPDGIGTVST 349
R YRPQLVMAI IPF QQVT +NVI+F APVLF I + S SLL SAVV +G ST
Sbjct: 277 QRKYRPQLVMAIAIPFFQQVTGINVIAFYAPVLFRAIGLGVSASLL-SAVVTGVVGMAST 335
Query: 350 ILPMILADKLGRTVLFLLGGIQILVSQVMIRSIMAAQLGDHGGFNIGYAYLILFLICVYK 409
+ M++ DKLGR VLFL+GGIQ+LVSQ+M+ I+AA+LGDHGG + YA+L+L LICVY
Sbjct: 336 FISMLIVDKLGRRVLFLVGGIQMLVSQIMVGGILAAELGDHGGVSKVYAFLVLLLICVYV 395
Query: 410 AGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLVAQTFLAMLCHFKAGVFFC 469
AGF +S GPLGWLVPSEIFPLEIRSAGQSITVAV +FTF+VAQTFL+MLCHFK+G+FF
Sbjct: 396 AGFGWSWGPLGWLVPSEIFPLEIRSAGQSITVAVSFIFTFIVAQTFLSMLCHFKSGIFFF 455
Query: 470 FGGWVAFMTTFVHFFLPETKYMPIEFMDKVWREHWFWRKIVDDVGEESKIQ 520
FGGWV MT FV++ LPETK +PIE MD+VW+EHWFW++IV + K++
Sbjct: 456 FGGWVVLMTAFVYYLLPETKSIPIEQMDRVWKEHWFWKRIVVEKLSNPKME 506
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225466031|ref|XP_002267655.1| PREDICTED: hexose carrier protein HEX6 [Vitis vinifera] gi|310877794|gb|ADP37128.1| hexose transporter [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 593 bits (1528), Expect = e-166, Method: Compositional matrix adjust.
Identities = 311/531 (58%), Positives = 384/531 (72%), Gaps = 53/531 (9%)
Query: 1 MTIFIVLSCIVAATSGLIFGYDIGVSGGVTLMEPFLKKCFLEVYKKMKEDPKISNYGKFD 60
+T+F+VLSC++A G+IFGYDIG+SGGVT M+ FLKK F EVYK+MKED KISNY KFD
Sbjct: 18 ITLFVVLSCMMAGMGGVIFGYDIGISGGVTSMDSFLKKFFPEVYKRMKEDTKISNYCKFD 77
Query: 61 SQLLAAFTSSLYIAGLIAFLFASKVTRAFGRKASILPKFQGRNADAIGLQKTEKELSYKR 120
SQLL +FTSSLYIAGL+A AS +T+ FGRK +IL G A IG
Sbjct: 78 SQLLTSFTSSLYIAGLVASFVASWITKKFGRKPTIL---AGGAAFLIG------------ 122
Query: 121 IETNLEQCSCCSCCYSNHCSIGGAAFNIYMLILGCVLLGVGIGFTSQSIQRFNQFAYMIL 180
++GGAAFN+YM+ILG +LLGVG+GF +Q++ +
Sbjct: 123 ------------------SALGGAAFNVYMVILGRILLGVGVGFANQAVPLY-------- 156
Query: 181 LSSNFETTRLSHIDFLLQISICYLILSANLLNYGTQKIKGSWGWRISLAMAAVPASILTI 240
LS I+ Q SI LSANL+N+GT+KIKG WGWR+SLA+AAVPASILT+
Sbjct: 157 LSEMAPPRYRGAINNGFQFSIGVGALSANLINFGTEKIKGGWGWRVSLALAAVPASILTL 216
Query: 241 GSLFLPETPNSIIQRNKDHQKAEEILQIVRNTTDVKAELDDIIRASS----------KII 290
G+LFLPETPNS+IQR+KD+ KAE +LQ VR T DV+AELDD+++ASS KI+
Sbjct: 217 GALFLPETPNSLIQRSKDYGKAELMLQRVRGTNDVQAELDDLVKASSLAKTINDPFKKIL 276
Query: 291 HRIYRPQLVMAILIPF-QQVTRVNVISFNAPVLFMTIKVRKSTSLLMSAVVPDGIGTVST 349
R YRPQLVMAI IPF QQVT +NVI+F APVLF I + S SLL SAVV +G ST
Sbjct: 277 QRKYRPQLVMAIAIPFFQQVTGINVIAFYAPVLFRAIGLGVSASLL-SAVVTGVVGMAST 335
Query: 350 ILPMILADKLGRTVLFLLGGIQILVSQVMIRSIMAAQLGDHGGFNIGYAYLILFLICVYK 409
+ M++ DKLGR VLFL+GGIQ+LVSQ+M+ I+AA+LGDHGG + YA+L+L LICVY
Sbjct: 336 FISMLIVDKLGRRVLFLVGGIQMLVSQIMVGGILAAELGDHGGVSKVYAFLVLLLICVYV 395
Query: 410 AGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLVAQTFLAMLCHFKAGVFFC 469
AGF +S GPLGWLVPSEIFPLEIRSAGQSITVAV +FTF+VAQTFL+MLCHFK+G+FF
Sbjct: 396 AGFGWSWGPLGWLVPSEIFPLEIRSAGQSITVAVSFIFTFIVAQTFLSMLCHFKSGIFFF 455
Query: 470 FGGWVAFMTTFVHFFLPETKYMPIEFMDKVWREHWFWRKIVDDVGEESKIQ 520
FGGWV MT FV++ LPETK +PIE MD+VW+EHWFW++IV + K++
Sbjct: 456 FGGWVVLMTAFVYYLLPETKSIPIEQMDRVWKEHWFWKRIVVEELSNPKME 506
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147816021|emb|CAN72462.1| hypothetical protein VITISV_025873 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 590 bits (1522), Expect = e-166, Method: Compositional matrix adjust.
Identities = 310/531 (58%), Positives = 383/531 (72%), Gaps = 53/531 (9%)
Query: 1 MTIFIVLSCIVAATSGLIFGYDIGVSGGVTLMEPFLKKCFLEVYKKMKEDPKISNYGKFD 60
+T+F+VLSC++A G+IFGYDIG+SGGVT M+ FLKK F VYK+MKED KISNY KFD
Sbjct: 18 ITLFVVLSCMMAGMGGVIFGYDIGISGGVTSMDSFLKKFFPXVYKRMKEDTKISNYCKFD 77
Query: 61 SQLLAAFTSSLYIAGLIAFLFASKVTRAFGRKASILPKFQGRNADAIGLQKTEKELSYKR 120
SQLL +FTSSLYIAGL+A AS +T+ FGRK +IL G A IG
Sbjct: 78 SQLLTSFTSSLYIAGLVASFVASWITKKFGRKPTIL---AGGAAFLIG------------ 122
Query: 121 IETNLEQCSCCSCCYSNHCSIGGAAFNIYMLILGCVLLGVGIGFTSQSIQRFNQFAYMIL 180
++GGAAFN+YM+ILG +LLGVG+GF +Q++ +
Sbjct: 123 ------------------SALGGAAFNVYMVILGRILLGVGVGFANQAVPLY-------- 156
Query: 181 LSSNFETTRLSHIDFLLQISICYLILSANLLNYGTQKIKGSWGWRISLAMAAVPASILTI 240
LS I+ Q SI LSANL+N+GT+KIKG WGWR+SLA+AAVPASILT+
Sbjct: 157 LSEMAPPRYRGAINNGFQFSIGVGALSANLINFGTEKIKGGWGWRVSLALAAVPASILTL 216
Query: 241 GSLFLPETPNSIIQRNKDHQKAEEILQIVRNTTDVKAELDDIIRASS----------KII 290
G+LFLPETPNS+IQR+KD+ KAE +LQ VR T DV+AELDD+++ASS KI+
Sbjct: 217 GALFLPETPNSLIQRSKDYGKAELMLQRVRGTNDVQAELDDLVKASSLAKTINDPFKKIL 276
Query: 291 HRIYRPQLVMAILIPF-QQVTRVNVISFNAPVLFMTIKVRKSTSLLMSAVVPDGIGTVST 349
R YRPQLVMAI IPF QQVT +NVI+F APVLF I + S SLL SAVV +G ST
Sbjct: 277 QRKYRPQLVMAIAIPFFQQVTGINVIAFYAPVLFRAIGLGVSASLL-SAVVTGVVGMAST 335
Query: 350 ILPMILADKLGRTVLFLLGGIQILVSQVMIRSIMAAQLGDHGGFNIGYAYLILFLICVYK 409
+ M++ DKLGR VLFL+GGIQ+LVSQ+M+ I+AA+LGDHGG + YA+L+L LICVY
Sbjct: 336 FISMLIVDKLGRRVLFLVGGIQMLVSQIMVGGILAAELGDHGGVSKVYAFLVLLLICVYV 395
Query: 410 AGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLVAQTFLAMLCHFKAGVFFC 469
AGF +S GPLGWLVPSEIFPLEIRSAGQSITVAV +FTF+VAQTFL+MLCHFK+G+FF
Sbjct: 396 AGFGWSWGPLGWLVPSEIFPLEIRSAGQSITVAVSFIFTFIVAQTFLSMLCHFKSGIFFF 455
Query: 470 FGGWVAFMTTFVHFFLPETKYMPIEFMDKVWREHWFWRKIVDDVGEESKIQ 520
FGGWV MT FV++ LPETK +PIE MD+VW+EHWFW++IV + K++
Sbjct: 456 FGGWVVLMTAFVYYLLPETKSIPIEQMDRVWKEHWFWKRIVVEEXSNPKME 506
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255539853|ref|XP_002510991.1| sugar transporter, putative [Ricinus communis] gi|223550106|gb|EEF51593.1| sugar transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 590 bits (1521), Expect = e-166, Method: Compositional matrix adjust.
Identities = 308/534 (57%), Positives = 381/534 (71%), Gaps = 55/534 (10%)
Query: 1 MTIFIVLSCIVAATSGLIFGYDIGVSGGVTLMEPFLKKCFLEVYKKMKEDPKISNYGKFD 60
MT F+ LSC++AA G+IFGYDIGVSGGVT M+PFLKK F +VY+KMKED +ISNY KFD
Sbjct: 18 MTSFVALSCMMAAMGGVIFGYDIGVSGGVTSMDPFLKKFFPDVYRKMKEDTEISNYCKFD 77
Query: 61 SQLLAAFTSSLYIAGLIAFLFASKVTRAFGRKASILPKFQGRNADAIGLQKTEKELSYKR 120
SQLL +FTSSLY+AGL+A FAS VTRAFGRK SIL
Sbjct: 78 SQLLTSFTSSLYVAGLVASFFASSVTRAFGRKPSIL------------------------ 113
Query: 121 IETNLEQCSCCSCCYSNHCSIGGAAFNIYMLILGCVLLGVGIGFTSQSIQRFNQFAYMIL 180
+ ++GGAA N+YMLI G VLLGVG+GF +Q++ +
Sbjct: 114 ---------LGGAVFLAGAALGGAAVNVYMLIFGRVLLGVGVGFANQAVPLY-------- 156
Query: 181 LSSNFETTRLSHIDFLLQISICYLILSANLLNYGTQKIKGSWGWRISLAMAAVPASILTI 240
LS I+ Q S+ LSANL+NYGT+KI+G WGWRISLAMAAVPA+ILT
Sbjct: 157 LSEMAPPRYRGAINNGFQFSVGIGALSANLINYGTEKIEGGWGWRISLAMAAVPAAILTF 216
Query: 241 GSLFLPETPNSIIQRNKDHQKAEEILQIVRNTTDVKAELDDIIRAS----------SKII 290
G+LFLPETPNS+IQR+ DH++A+ +LQ VR TTDV+AELDD+I+AS I+
Sbjct: 217 GALFLPETPNSLIQRSNDHERAKLMLQRVRGTTDVQAELDDLIKASIISRTIQHPFKNIM 276
Query: 291 HRIYRPQLVMAILIPF-QQVTRVNVISFNAPVLFMTIKVRKSTSLLMSAVVPDGIGTVST 349
R YRPQLVMA+ IPF QQVT +NVI+F AP+LF TI + +S SLL S++V +G+ ST
Sbjct: 277 RRKYRPQLVMAVAIPFFQQVTGINVIAFYAPILFRTIGLEESASLL-SSIVTGLVGSAST 335
Query: 350 ILPMILADKLGRTVLFLLGGIQILVSQVMIRSIMAAQLGDHGGFNIGYAYLILFLICVYK 409
+ M++ DKLGR LF+ GG+Q+ V+Q+M+ SIMAA+LGDHGG GYAY++L LIC+Y
Sbjct: 336 FISMLIVDKLGRRALFIFGGVQMFVAQIMVGSIMAAELGDHGGIGKGYAYIVLILICIYV 395
Query: 410 AGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLVAQTFLAMLCHFKAGVFFC 469
AGF +S GPLGWLVPSEIFPLEIRSAGQSI VAV LFTF+VAQTFL+MLCHFK+G+FF
Sbjct: 396 AGFGWSWGPLGWLVPSEIFPLEIRSAGQSIVVAVSFLFTFVVAQTFLSMLCHFKSGIFFF 455
Query: 470 FGGWVAFMTTFVHFFLPETKYMPIEFMDKVWREHWFWRKIVDD--VGEESKIQA 521
FGGWV MT FVHF LPETK +PIE MD VWR+HWFW+KI+ + E +K++A
Sbjct: 456 FGGWVVVMTAFVHFLLPETKKVPIEKMDIVWRDHWFWKKIIGEEAAEENNKMEA 509
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|1708191|sp|Q07423.1|HEX6_RICCO RecName: Full=Hexose carrier protein HEX6 gi|467319|gb|AAA79857.1| hexose carrier protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 589 bits (1519), Expect = e-165, Method: Compositional matrix adjust.
Identities = 308/534 (57%), Positives = 381/534 (71%), Gaps = 55/534 (10%)
Query: 1 MTIFIVLSCIVAATSGLIFGYDIGVSGGVTLMEPFLKKCFLEVYKKMKEDPKISNYGKFD 60
MT F+ LSC++AA G+IFGYDIGVSGGVT M+PFLKK F +VY+KMKED +ISNY KFD
Sbjct: 18 MTSFVALSCMMAAMGGVIFGYDIGVSGGVTSMDPFLKKFFPDVYRKMKEDTEISNYCKFD 77
Query: 61 SQLLAAFTSSLYIAGLIAFLFASKVTRAFGRKASILPKFQGRNADAIGLQKTEKELSYKR 120
SQLL +FTSSLY+AGL+A FAS VTRAFGRK SIL
Sbjct: 78 SQLLTSFTSSLYVAGLVASFFASSVTRAFGRKPSIL------------------------ 113
Query: 121 IETNLEQCSCCSCCYSNHCSIGGAAFNIYMLILGCVLLGVGIGFTSQSIQRFNQFAYMIL 180
+ ++GGAA N+YMLI G VLLGVG+GF +Q++ +
Sbjct: 114 ---------LGGXVFLAXAALGGAAVNVYMLIFGRVLLGVGVGFANQAVPLY-------- 156
Query: 181 LSSNFETTRLSHIDFLLQISICYLILSANLLNYGTQKIKGSWGWRISLAMAAVPASILTI 240
LS I+ Q S+ LSANL+NYGT+KI+G WGWRISLAMAAVPA+ILT
Sbjct: 157 LSEMAPPRYRGAINNGFQFSVGIGALSANLINYGTEKIEGGWGWRISLAMAAVPAAILTF 216
Query: 241 GSLFLPETPNSIIQRNKDHQKAEEILQIVRNTTDVKAELDDIIRAS----------SKII 290
G+LFLPETPNS+IQR+ DH++A+ +LQ VR TTDV+AELDD+I+AS I+
Sbjct: 217 GALFLPETPNSLIQRSNDHERAKLMLQRVRGTTDVQAELDDLIKASIISRTIQHPFKNIM 276
Query: 291 HRIYRPQLVMAILIPF-QQVTRVNVISFNAPVLFMTIKVRKSTSLLMSAVVPDGIGTVST 349
R YRPQLVMA+ IPF QQVT +NVI+F AP+LF TI + +S SLL S++V +G+ ST
Sbjct: 277 RRKYRPQLVMAVAIPFFQQVTGINVIAFYAPILFRTIGLEESASLL-SSIVTGLVGSAST 335
Query: 350 ILPMILADKLGRTVLFLLGGIQILVSQVMIRSIMAAQLGDHGGFNIGYAYLILFLICVYK 409
+ M++ DKLGR LF+ GG+Q+ V+Q+M+ SIMAA+LGDHGG GYAY++L LIC+Y
Sbjct: 336 FISMLIVDKLGRRALFIFGGVQMFVAQIMVGSIMAAELGDHGGIGKGYAYIVLILICIYV 395
Query: 410 AGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLVAQTFLAMLCHFKAGVFFC 469
AGF +S GPLGWLVPSEIFPLEIRSAGQSI VAV LFTF+VAQTFL+MLCHFK+G+FF
Sbjct: 396 AGFGWSWGPLGWLVPSEIFPLEIRSAGQSIVVAVSFLFTFVVAQTFLSMLCHFKSGIFFF 455
Query: 470 FGGWVAFMTTFVHFFLPETKYMPIEFMDKVWREHWFWRKIVDD--VGEESKIQA 521
FGGWV MT FVHF LPETK +PIE MD VWR+HWFW+KI+ + E +K++A
Sbjct: 456 FGGWVVVMTAFVHFLLPETKKVPIEKMDIVWRDHWFWKKIIGEEAAEENNKMEA 509
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357455795|ref|XP_003598178.1| Hexose carrier [Medicago truncatula] gi|355487226|gb|AES68429.1| Hexose carrier [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 580 bits (1494), Expect = e-163, Method: Compositional matrix adjust.
Identities = 312/523 (59%), Positives = 373/523 (71%), Gaps = 53/523 (10%)
Query: 1 MTIFIVLSCIVAATSGLIFGYDIGVSGGVTLMEPFLKKCFLEVYKKMKEDPKISNYGKFD 60
MT ++LSC+VAAT G+IFGYDIG+SGGVT M PFL+K F +VY KMK+D KISNY KFD
Sbjct: 19 MTPIVILSCMVAATGGIIFGYDIGISGGVTSMVPFLEKFFPDVYTKMKQDNKISNYCKFD 78
Query: 61 SQLLAAFTSSLYIAGLIAFLFASKVTRAFGRKASILPKFQGRNADAIGLQKTEKELSYKR 120
SQLL FTSSLYIAGL+A FAS +TRAFGRK SIL G A IG
Sbjct: 79 SQLLTTFTSSLYIAGLLASFFASSITRAFGRKPSIL---VGGAAFLIG------------ 123
Query: 121 IETNLEQCSCCSCCYSNHCSIGGAAFNIYMLILGCVLLGVGIGFTSQSIQRFNQFAYMIL 180
++GGAA NIYMLILG VLLGVGIGF +Q++ +
Sbjct: 124 ------------------AALGGAALNIYMLILGRVLLGVGIGFANQAVPLY-------- 157
Query: 181 LSSNFETTRLSHIDFLLQISICYLILSANLLNYGTQKIKGSWGWRISLAMAAVPASILTI 240
LS I+ Q+ + +LSANL+N+GT+KIK WGWRISLAMAAVPA+ILT+
Sbjct: 158 LSEMALPRYRGAINIGFQLCVGIGVLSANLINFGTEKIKDGWGWRISLAMAAVPATILTL 217
Query: 241 GSLFLPETPNSIIQRNKDHQKAEEILQIVRNTTDVKAELDDIIRAS----------SKII 290
G+ FLPETPNSIIQ +K+HQKA+ +LQ +R T DV+ E +D+I AS I+
Sbjct: 218 GAFFLPETPNSIIQNSKNHQKAKLMLQSIRGTHDVQQEFEDLIEASIMSNSIKHPFKNIL 277
Query: 291 HRIYRPQLVMAILIPF-QQVTRVNVISFNAPVLFMTIKVRKSTSLLMSAVVPDGIGTVST 349
R YRPQLVMAI IPF QQ T +NVISF AP+LF+TI + +S SLL SAV+ +GT ST
Sbjct: 278 QRKYRPQLVMAIAIPFFQQFTGINVISFYAPILFLTIGLGESASLL-SAVMVGIVGTTST 336
Query: 350 ILPMILADKLGRTVLFLLGGIQILVSQVMIRSIMAAQLGDHGGFNIGYAYLILFLICVYK 409
+ M++ DKLGR VLF+ GGIQ+ SQ++I SIMAAQLGDHG + YAYLIL LIC+Y
Sbjct: 337 FISMLIVDKLGRRVLFISGGIQMFFSQILIGSIMAAQLGDHGEISKKYAYLILVLICIYV 396
Query: 410 AGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLVAQTFLAMLCHFKAGVFFC 469
AGFA+S GPLGWLVPSEIFPLEIRSA QSITVAV+ LFTF+VAQTFL+MLCHFK G FF
Sbjct: 397 AGFAWSWGPLGWLVPSEIFPLEIRSAAQSITVAVNFLFTFIVAQTFLSMLCHFKYGTFFF 456
Query: 470 FGGWVAFMTTFVHFFLPETKYMPIEFMDKVWREHWFWRKIVDD 512
FGGWV MT FV+F LPETK +PIE MD+VWREH+FW++IV D
Sbjct: 457 FGGWVVIMTVFVYFLLPETKNVPIEQMDRVWREHFFWKRIVGD 499
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356515367|ref|XP_003526372.1| PREDICTED: hexose carrier protein HEX6-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 566 bits (1459), Expect = e-158, Method: Compositional matrix adjust.
Identities = 294/530 (55%), Positives = 376/530 (70%), Gaps = 57/530 (10%)
Query: 1 MTIFIVLSCIVAATSGLIFGYDIGVSGGVTLMEPFLKKCFLEVYKKMK-EDPKISNYGKF 59
+T+++VLSC++AA G+IFGYDIG++GGVT MEPFLKK F +VY KMK D K+SNY F
Sbjct: 18 ITLYVVLSCMMAAMGGVIFGYDIGITGGVTSMEPFLKKFFHKVYLKMKLADDKVSNYCVF 77
Query: 60 DSQLLAAFTSSLYIAGLIAFLFASKVTRAFGRKASILPKFQGRNADAIGLQKTEKELSYK 119
DSQLL +FTSSLY+AGL+ FAS +T+AFGRK SI+
Sbjct: 78 DSQLLTSFTSSLYVAGLVTSFFASYITKAFGRKPSIV----------------------- 114
Query: 120 RIETNLEQCSCCSCCYSNHCSIGGAAFNIYMLILGCVLLGVGIGFTSQSIQRFNQFAYMI 179
+ +GGAAFN+YMLI+G +LLGVG+GF +Q++
Sbjct: 115 ----------VGGAAFLAGTGLGGAAFNVYMLIVGRLLLGVGVGFANQAVP--------- 155
Query: 180 LLSSNFETTRL-SHIDFLLQISICYLILSANLLNYGTQKIKGSWGWRISLAMAAVPASIL 238
L S RL I+ Q+SI LSANL+NYGT+KI+G WGWR+SLAMAAVPAS+L
Sbjct: 156 LYLSEMALPRLRGAINNGFQLSIGIGALSANLINYGTEKIEGGWGWRMSLAMAAVPASVL 215
Query: 239 TIGSLFLPETPNSIIQRNKDHQKAEEILQIVRNTTDVKAELDDIIRASSK---------- 288
T+G+LFLPETPNS+IQR+ D QKA+ +LQ +R DV+AELDD+I+ASS
Sbjct: 216 TLGALFLPETPNSVIQRSHDKQKAKLMLQRIRGMEDVQAELDDLIKASSPSKTNNKQSLK 275
Query: 289 -IIHRIYRPQLVMAILIPF-QQVTRVNVISFNAPVLFMTIKVRKSTSLLMSAVVPDGIGT 346
I+ YRPQLVMA+ IPF QQVT +NVI+F AP+LF TI + +S SLL SAV+ +GT
Sbjct: 276 LILKGRYRPQLVMALAIPFFQQVTGINVIAFYAPLLFRTIGLGESASLL-SAVMTGVVGT 334
Query: 347 VSTILPMILADKLGRTVLFLLGGIQILVSQVMIRSIMAAQLGDHGGFNIGYAYLILFLIC 406
ST + M + DKLGR LF++GGIQ+ VSQ ++ IMA L DHGG + GYA+++L +IC
Sbjct: 335 GSTFISMFVVDKLGRRTLFMIGGIQMFVSQCIVGGIMALHLKDHGGLSKGYAFVVLVMIC 394
Query: 407 VYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLVAQTFLAMLCHFKAGV 466
+Y AGF +S GPLGWLVPSEIFPLEIRSAGQSITVAV +FTF+VAQTFL+MLCHF++G+
Sbjct: 395 IYVAGFGWSWGPLGWLVPSEIFPLEIRSAGQSITVAVSFIFTFIVAQTFLSMLCHFRSGI 454
Query: 467 FFCFGGWVAFMTTFVHFFLPETKYMPIEFMDKVWREHWFWRKIVDDVGEE 516
FF FGGWV MTTFV++FLPETK +P+E M+KVW+EHWFW++IV +V +
Sbjct: 455 FFFFGGWVVVMTTFVYYFLPETKSVPLEQMEKVWQEHWFWKRIVGEVSDR 504
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224139190|ref|XP_002323002.1| predicted protein [Populus trichocarpa] gi|222867632|gb|EEF04763.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 563 bits (1452), Expect = e-158, Method: Compositional matrix adjust.
Identities = 311/532 (58%), Positives = 382/532 (71%), Gaps = 53/532 (9%)
Query: 1 MTIFIVLSCIVAATSGLIFGYDIGVSGGVTLMEPFLKKCFLEVYKKMKEDPKISNYGKFD 60
MT F+VLSC++AA G+IFGYDIG++GGVT MEPFL+K F +VY+KMKED +ISNY KFD
Sbjct: 19 MTWFVVLSCMMAAMGGVIFGYDIGITGGVTSMEPFLEKFFPKVYRKMKEDTEISNYCKFD 78
Query: 61 SQLLAAFTSSLYIAGLIAFLFASKVTRAFGRKASILPKFQGRNADAIGLQKTEKELSYKR 120
SQLL +FTSS+Y+AG IA FAS +T+AFGRK SI
Sbjct: 79 SQLLTSFTSSMYVAGFIASFFASSITKAFGRKPSI------------------------- 113
Query: 121 IETNLEQCSCCSCCYSNHCSIGGAAFNIYMLILGCVLLGVGIGFTSQSIQRFNQFAYMIL 180
+ ++GGAAFN+YMLI G VLLGVG+GF +Q++ +
Sbjct: 114 --------LLGGAAFLAGAALGGAAFNVYMLIFGRVLLGVGVGFANQAVPLY-------- 157
Query: 181 LSSNFETTRLSHIDFLLQISICYLILSANLLNYGTQKIKGSWGWRISLAMAAVPASILTI 240
LS I+ Q SI LSANL+NYGT+KIKG WGWRISLA+AAVPA+ILT+
Sbjct: 158 LSEMAPPRYRGAINNGFQFSIGIGALSANLINYGTEKIKGGWGWRISLALAAVPATILTL 217
Query: 241 GSLFLPETPNSIIQRNKDHQKAEEILQIVRNTTDVKAELDDIIRASS----------KII 290
G++FLPETPNS+IQ D ++A+ +LQ VR T DV+AELDD+I+ASS KII
Sbjct: 218 GAVFLPETPNSLIQLTDDTERAKLMLQRVRGTEDVQAELDDLIKASSISKTVEHPFKKII 277
Query: 291 HRIYRPQLVMAILIPF-QQVTRVNVISFNAPVLFMTIKVRKSTSLLMSAVVPDGIGTVST 349
R YRPQLVMAI IPF QQVT +NVI+F AP+LF TI + +S SL MS+VV +GT ST
Sbjct: 278 KRKYRPQLVMAIAIPFFQQVTGINVIAFYAPILFRTIGLGESASL-MSSVVTGIVGTGST 336
Query: 350 ILPMILADKLGRTVLFLLGGIQILVSQVMIRSIMAAQLGDHGGFNIGYAYLILFLICVYK 409
+ M++ DKLGR LF+ GG+Q+LVSQ+M+ IMAAQLGDHGG GYAY++L LIC+Y
Sbjct: 337 FISMLVVDKLGRRALFIFGGVQMLVSQIMVGGIMAAQLGDHGGIGGGYAYVVLILICIYV 396
Query: 410 AGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLVAQTFLAMLCHFKAGVFFC 469
AGF++S GPLGWLVPSEIFPLEIRSAGQSI VAV LFTF+VAQTFLAMLCHFK+G+FF
Sbjct: 397 AGFSWSWGPLGWLVPSEIFPLEIRSAGQSIVVAVSFLFTFIVAQTFLAMLCHFKSGIFFF 456
Query: 470 FGGWVAFMTTFVHFFLPETKYMPIEFMDKVWREHWFWRKIVDDVGEESKIQA 521
FGGWV MT FV++FLPETK PIE MD+VWREH FW KIV ++ E++KI+A
Sbjct: 457 FGGWVVVMTAFVYYFLPETKNTPIEKMDRVWREHGFWNKIVGEMDEQTKIEA 508
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357455797|ref|XP_003598179.1| Hexose carrier protein HEX6 [Medicago truncatula] gi|355487227|gb|AES68430.1| Hexose carrier protein HEX6 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 560 bits (1443), Expect = e-157, Method: Compositional matrix adjust.
Identities = 294/529 (55%), Positives = 369/529 (69%), Gaps = 56/529 (10%)
Query: 1 MTIFIVLSCIVAATSGLIFGYDIGVSGGVTLMEPFLKKCFLEVYKKMKEDPKISNYGKFD 60
+T+++VLSC++AA G+IFGYDIG++GGVT MEPFL K F +Y KMK D K+SNY FD
Sbjct: 19 ITLYVVLSCMMAAMGGVIFGYDIGITGGVTSMEPFLNKFFHNIYLKMKSDDKVSNYCMFD 78
Query: 61 SQLLAAFTSSLYIAGLIAFLFASKVTRAFGRKASILPKFQGRNADAIGLQKTEKELSYKR 120
SQLL +FTSSLY+AG + FAS VTR FGRK SI+
Sbjct: 79 SQLLTSFTSSLYVAGFVTSFFASYVTRVFGRKPSIV------------------------ 114
Query: 121 IETNLEQCSCCSCCYSNHCSIGGAAFNIYMLILGCVLLGVGIGFTSQSIQRFNQFAYMIL 180
+ ++GGAAFN+YMLI+G +LLGVG+GF +Q++ L
Sbjct: 115 ---------AGGAAFLAGTALGGAAFNVYMLIVGRLLLGVGVGFANQAVP---------L 156
Query: 181 LSSNFETTRL-SHIDFLLQISICYLILSANLLNYGTQKIKGSWGWRISLAMAAVPASILT 239
S R I+ Q+SI LSANL+NYGT+KI+G WGWR+SLAMAAVPAS LT
Sbjct: 157 YLSEMALPRFRGAINNGFQLSIGIGALSANLINYGTEKIEGGWGWRVSLAMAAVPASFLT 216
Query: 240 IGSLFLPETPNSIIQRNKDHQKAEEILQIVRNTTDVKAELDDIIRASSK----------- 288
+G+LFLPETPNS+IQ +DHQKA+ ILQ +R DV+AELDD+ +ASS
Sbjct: 217 LGALFLPETPNSLIQTTQDHQKAKRILQRIRGIEDVEAELDDLTKASSTSKTSSQQPFKI 276
Query: 289 IIHRIYRPQLVMAILIPF-QQVTRVNVISFNAPVLFMTIKVRKSTSLLMSAVVPDGIGTV 347
I+ R YRPQLVMAI IPF QQVT +NVI+F AP+LF TI + +S SLL S+V+ +GT
Sbjct: 277 IMKRRYRPQLVMAIAIPFFQQVTGINVIAFYAPLLFRTIGLGESASLL-SSVMTGIVGTG 335
Query: 348 STILPMILADKLGRTVLFLLGGIQILVSQVMIRSIMAAQLGDHGGFNIGYAYLILFLICV 407
ST + M + DKLGR LF++GGIQ+ VSQ ++ IMA L DHGG + GYAY++L +IC+
Sbjct: 336 STFISMFIVDKLGRRTLFIVGGIQMFVSQCIVGGIMAVHLKDHGGLSKGYAYMVLIMICI 395
Query: 408 YKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLVAQTFLAMLCHFKAGVF 467
Y AGF +S GPLGWLVPSEIFPLEIRSAGQSITVAV LFTF+VAQTFL+MLCHFK+G+F
Sbjct: 396 YVAGFGWSWGPLGWLVPSEIFPLEIRSAGQSITVAVSFLFTFIVAQTFLSMLCHFKSGIF 455
Query: 468 FCFGGWVAFMTTFVHFFLPETKYMPIEFMDKVWREHWFWRKIVDDVGEE 516
F FGGWV MT FV+ FLPETK +P+E M+KVW+EHWFW+KIV + ++
Sbjct: 456 FFFGGWVVVMTVFVYCFLPETKNVPLEQMEKVWQEHWFWKKIVGKISDD 504
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 522 | ||||||
| TAIR|locus:2151596 | 514 | AT5G61520 [Arabidopsis thalian | 0.695 | 0.706 | 0.503 | 1.4e-114 | |
| TAIR|locus:2202044 | 522 | STP1 "AT1G11260" [Arabidopsis | 0.603 | 0.603 | 0.509 | 3.5e-107 | |
| TAIR|locus:2132213 | 513 | STP7 "sugar transporter protei | 0.659 | 0.670 | 0.448 | 1.9e-106 | |
| TAIR|locus:2151074 | 526 | MSS1 "AT5G26340" [Arabidopsis | 0.632 | 0.627 | 0.474 | 8.2e-106 | |
| TAIR|locus:2092286 | 514 | STP4 "sugar transporter 4" [Ar | 0.599 | 0.608 | 0.515 | 2.8e-105 | |
| TAIR|locus:2011957 | 517 | STP9 "sugar transporter 9" [Ar | 0.616 | 0.622 | 0.476 | 3.2e-102 | |
| TAIR|locus:2092221 | 514 | AT3G19940 [Arabidopsis thalian | 0.597 | 0.607 | 0.475 | 4.1e-100 | |
| TAIR|locus:2166781 | 514 | STP11 "sugar transporter 11" [ | 0.607 | 0.616 | 0.486 | 5.3e-100 | |
| TAIR|locus:2009323 | 506 | AT1G34580 [Arabidopsis thalian | 0.576 | 0.594 | 0.433 | 4.2e-96 | |
| TAIR|locus:2195995 | 504 | STP14 "sugar transport protein | 0.613 | 0.634 | 0.426 | 3e-91 |
| TAIR|locus:2151596 AT5G61520 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 876 (313.4 bits), Expect = 1.4e-114, Sum P(2) = 1.4e-114
Identities = 196/389 (50%), Positives = 256/389 (65%)
Query: 141 IGGAAFNIYMXXXXXXXXXXXXXFTSQSIQRFNQFAYMILLSSNFETTRLSHIDFLLQIS 200
+GG+A N+ M F +QS+ Y+ ++ +S+ F L I
Sbjct: 132 LGGSAQNVAMLIIARLLLGVGVGFANQSVP-----LYLSEMAPAKYRGAISN-GFQLCIG 185
Query: 201 ICYLILSANLLNYGTQKIKGSWGWRISLAMAAVPASILTIGSLFLPETPNSIIQRNKDHQ 260
I +L SAN++NY TQ IK GWRISLA AA+PASILT+GSLFLPETPNSIIQ D
Sbjct: 186 IGFL--SANVINYETQNIKH--GWRISLATAAIPASILTLGSLFLPETPNSIIQTTGDVH 241
Query: 261 KAEEILQIVRNTTDVKAELDDIIRASS----------KIIHRIYRPQLVMAILIPF-QQV 309
K E +L+ VR T DV+ EL D++ ASS K++ R YRP+LVMA++IPF QQV
Sbjct: 242 KTELMLRRVRGTNDVQDELTDLVEASSGSDTDSNAFLKLLQRKYRPELVMALVIPFFQQV 301
Query: 310 TRVNVISFNAPVLFMTIKVRKSTSLLMSAVVPDGIGTVSTILPMILADKLGRTVLFLLGG 369
T +NV++F APVL+ T+ +S SL MS +V +GT ST+L M++ D++GR LFL+GG
Sbjct: 302 TGINVVAFYAPVLYRTVGFGESGSL-MSTLVTGIVGTSSTLLSMLVVDRIGRKTLFLIGG 360
Query: 370 IQILVSQVMIRSI-MAAQLGDHGGFNIGYAYLILFLICVYKAGFAFSRGPLGWLVPSEIF 428
+Q+LVSQV I I M A + D G GY Y ++ L+CVY AGF +S GPLGWLVPSEIF
Sbjct: 361 LQMLVSQVTIGVIVMVADVHD-GVIKEGYGYAVVVLVCVYVAGFGWSWGPLGWLVPSEIF 419
Query: 429 PLEIRSAGQSITVAVDLLFTFLVAQTFLAMLCHFKAGVFFCFGGWVAFMTTFVHFFLPET 488
PLEIRS QS+TVAV +FTF VAQ+ MLC F+AG+FF +GGW+ MT V FLPET
Sbjct: 420 PLEIRSVAQSVTVAVSFVFTFAVAQSAPPMLCKFRAGIFFFYGGWLVVMTVAVQLFLPET 479
Query: 489 KYMPIEFMDKVWREHWFWRKIVD--DVGE 515
K +PIE + +W +HWFWR++ D+ E
Sbjct: 480 KNVPIEKVVGLWEKHWFWRRMTSKRDIQE 508
|
|
| TAIR|locus:2202044 STP1 "AT1G11260" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 805 (288.4 bits), Expect = 3.5e-107, Sum P(2) = 3.5e-107
Identities = 169/332 (50%), Positives = 224/332 (67%)
Query: 198 QISICYLILSANLLNYGTQKIKGSWGWRISLAMAAVPASILTIGSLFLPETPNSIIQRNK 257
Q+SI IL A +LNY KIKG WGWR+SL A VPA I+TIGSL LP+TPNS+I+R +
Sbjct: 175 QLSITIGILVAEVLNYFFAKIKGGWGWRLSLGGAVVPALIITIGSLVLPDTPNSMIERGQ 234
Query: 258 DHQKAEEILQIVRNTTDVKAELDDIIRASSK----------IIHRIYRPQLVMAILIPF- 306
H++A+ L+ +R DV E DD++ AS + ++ R YRP L MA++IPF
Sbjct: 235 -HEEAKTKLRRIRGVDDVSQEFDDLVAASKESQSIEHPWRNLLRRKYRPHLTMAVMIPFF 293
Query: 307 QQVTRVNVISFNAPVLFMTIKVRKSTSLLMSAVVPDGIGTVSTILPMILADKLGRTVLFL 366
QQ+T +NVI F APVLF TI SL MSAVV + +T++ + D+ GR LFL
Sbjct: 294 QQLTGINVIMFYAPVLFNTIGFTTDASL-MSAVVTGSVNVAATLVSIYGVDRWGRRFLFL 352
Query: 367 LGGIQILVSQVMIRSIMAAQLGDHG--G-FNIGYAYLILFLICVYKAGFAFSRGPLGWLV 423
GG Q+L+ Q ++ + + A+ G G G YA +++ IC+Y AGFA+S GPLGWLV
Sbjct: 353 EGGTQMLICQAVVAACIGAKFGVDGTPGELPKWYAIVVVTFICIYVAGFAWSWGPLGWLV 412
Query: 424 PSEIFPLEIRSAGQSITVAVDLLFTFLVAQTFLAMLCHFKAGVFFCFGGWVAFMTTFVHF 483
PSEIFPLEIRSA QSITV+V+++FTF++AQ FL MLCH K G+F F +V M+ FV+
Sbjct: 413 PSEIFPLEIRSAAQSITVSVNMIFTFIIAQIFLTMLCHLKFGLFLVFAFFVVVMSIFVYI 472
Query: 484 FLPETKYMPIEFMDKVWREHWFWRKIVDDVGE 515
FLPETK +PIE M +VWR HW+W + V+D GE
Sbjct: 473 FLPETKGIPIEEMGQVWRSHWYWSRFVED-GE 503
|
|
| TAIR|locus:2132213 STP7 "sugar transporter protein 7" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 796 (285.3 bits), Expect = 1.9e-106, Sum P(2) = 1.9e-106
Identities = 162/361 (44%), Positives = 234/361 (64%)
Query: 172 FNQFAYMILLSSNFETTRLSHIDFLLQISICYLILSANLLNYGTQKIKGSWGWRISLAMA 231
F A + LS T ++ + Q++ I +AN++NYGTQ++K WGWR+SL +A
Sbjct: 152 FGNQAVPLYLSEVAPTHLRGGLNMMFQLATTIGIFTANMVNYGTQQLK-PWGWRLSLGLA 210
Query: 232 AVPASILTIGSLFLPETPNSIIQRNKDHQKAEEILQIVRNTTDVKAELDDIIRASS---- 287
A PA ++T+G FLPETPNS+++R ++ +L +R T +V AEL D++ AS
Sbjct: 211 AFPALLMTLGGYFLPETPNSLVERGLT-ERGRRVLVKLRGTENVNAELQDMVDASELANS 269
Query: 288 ------KIIHRIYRPQLVMAILIP-FQQVTRVNVISFNAPVLFMTIKVRKSTSLLMSAVV 340
I+ + +RPQLVMAI +P FQ +T +N I F APVLF T+ + SL SA+
Sbjct: 270 IKHPFRNILQKRHRPQLVMAICMPMFQILTGINSILFYAPVLFQTMGFGGNASLYSSALT 329
Query: 341 PDGIGTVSTILPMILADKLGRTVLFLLGGIQILVSQVMIRSIMAAQLGDHGGFNIGYAYL 400
+ +ST + + L D+LGR L + GGIQ+++ QV++ I+ + GD+ + GY+ +
Sbjct: 330 -GAVLVLSTFISIGLVDRLGRRALLITGGIQMIICQVIVAVILGVKFGDNQELSKGYSVI 388
Query: 401 ILFLICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLVAQTFLAMLC 460
++ IC++ F +S GPLGW +PSEIFPLE RSAGQSITVAV+LLFTF++AQ FL +LC
Sbjct: 389 VVIFICLFVVAFGWSWGPLGWTIPSEIFPLETRSAGQSITVAVNLLFTFIIAQAFLGLLC 448
Query: 461 HFKAGVFFCFGGWVAFMTTFVHFFLPETKYMPIEFMDKVWREHWFWRKIVDD---VGEES 517
FK G+F F GWV MT FV+F LPETK +PIE M +W +HWFW+K++ D + +ES
Sbjct: 449 AFKFGIFLFFAGWVTVMTIFVYFLLPETKGVPIEEMTLLWSKHWFWKKVLPDATNLEDES 508
Query: 518 K 518
K
Sbjct: 509 K 509
|
|
| TAIR|locus:2151074 MSS1 "AT5G26340" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 809 (289.8 bits), Expect = 8.2e-106, Sum P(2) = 8.2e-106
Identities = 165/348 (47%), Positives = 230/348 (66%)
Query: 180 LLSSNFETTRL-SHIDFLLQISICYLILSANLLNYGTQKIKGSWGWRISLAMAAVPASIL 238
L S TR+ ++ L Q+++ IL ANL+NYGT KIKG WGWR+SL +A +PA +L
Sbjct: 157 LFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTAKIKGGWGWRLSLGLAGIPALLL 216
Query: 239 TIGSLFLPETPNSIIQRNK-DHQKAEEILQIVRNTTDVKAELDDIIRASS---------- 287
T+G+L + ETPNS+++R + D KA +L+ +R T +V+ E D++ AS
Sbjct: 217 TVGALLVTETPNSLVERGRLDEGKA--VLRRIRGTDNVEPEFADLLEASRLAKEVKHPFR 274
Query: 288 KIIHRIYRPQLVMAILIP-FQQVTRVNVISFNAPVLFMTIKVRKSTSLLMSAVVPDGIGT 346
++ R RPQLV+A+ + FQQ T +N I F APVLF T+ SL SAVV +
Sbjct: 275 NLLQRRNRPQLVIAVALQIFQQCTGINAIMFYAPVLFSTLGFGSDASLY-SAVVTGAVNV 333
Query: 347 VSTILPMILADKLGRTVLFLLGGIQILVSQVMIRSIMAAQLGDHG-GFNIGYAYLILFLI 405
+ST++ + DK+GR VL L G+Q+ SQV+I I+ ++ D + G+A L++ +I
Sbjct: 334 LSTLVSIYSVDKVGRRVLLLEAGVQMFFSQVVIAIILGVKVTDTSTNLSKGFAILVVVMI 393
Query: 406 CVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLVAQTFLAMLCHFKAG 465
C Y A FA+S GPLGWL+PSE FPLE RSAGQS+TV V+LLFTF++AQ FL+MLCHFK G
Sbjct: 394 CTYVAAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFIIAQAFLSMLCHFKFG 453
Query: 466 VFFCFGGWVAFMTTFVHFFLPETKYMPIEFM-DKVWREHWFWRKIVDD 512
+F F WV M+ FV F LPETK +PIE M ++VW++HWFW + +DD
Sbjct: 454 IFIFFSAWVLIMSVFVMFLLPETKNIPIEEMTERVWKKHWFWARFMDD 501
|
|
| TAIR|locus:2092286 STP4 "sugar transporter 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 791 (283.5 bits), Expect = 2.8e-105, Sum P(2) = 2.8e-105
Identities = 169/328 (51%), Positives = 226/328 (68%)
Query: 198 QISICYLILSANLLNYGTQKIKGSWGWRISLAMAAVPASILTIGSLFLPETPNSIIQRNK 257
Q++I + I+ A ++NY T ++KG+ GWRISL +A VPA ++ IG+L LP+TPNS+I+R
Sbjct: 174 QVAIIFGIVVATIINYFTAQMKGNIGWRISLGLACVPAVMIMIGALILPDTPNSLIERGY 233
Query: 258 DHQKAEEILQIVRNTTDVKAELDDIIRAS--SKII-H---RI----YRPQLVMAILIPF- 306
++A+E+LQ +R T +V E D+I AS SK + H I YRPQL+M IPF
Sbjct: 234 T-EEAKEMLQSIRGTNEVDEEFQDLIDASEESKQVKHPWKNIMLPRYRPQLIMTCFIPFF 292
Query: 307 QQVTRVNVISFNAPVLFMTIKVRKSTSLLMSAVVPDGIGTVSTILPMILADKLGRTVLFL 366
QQ+T +NVI+F APVLF T+ SLL SA+V I + T + + D+ GR +LFL
Sbjct: 293 QQLTGINVITFYAPVLFQTLGFGSKASLL-SAMVTGIIELLCTFVSVFTVDRFGRRILFL 351
Query: 367 LGGIQILVSQVMIRSIMAAQLGDHGGFNIGY--AYLILFLICVYKAGFAFSRGPLGWLVP 424
GGIQ+LVSQ+ I +++ + G G NIG A LI+ LIC+Y AGFA+S GPLGWLVP
Sbjct: 352 QGGIQMLVSQIAIGAMIGVKFGVAGTGNIGKSDANLIVALICIYVAGFAWSWGPLGWLVP 411
Query: 425 SEIFPLEIRSAGQSITVAVDLLFTFLVAQTFLAMLCHFKAGVFFCFGGWVAFMTTFVHFF 484
SEI PLEIRSA Q+I V+V++ FTFLVAQ FL MLCH K G+FF F +V MT F++
Sbjct: 412 SEISPLEIRSAAQAINVSVNMFFTFLVAQLFLTMLCHMKFGLFFFFAFFVVIMTIFIYLM 471
Query: 485 LPETKYMPIEFMDKVWREHWFWRKIVDD 512
LPETK +PIE M++VW+ HWFW K + D
Sbjct: 472 LPETKNVPIEEMNRVWKAHWFWGKFIPD 499
|
|
| TAIR|locus:2011957 STP9 "sugar transporter 9" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 759 (272.2 bits), Expect = 3.2e-102, Sum P(2) = 3.2e-102
Identities = 164/344 (47%), Positives = 229/344 (66%)
Query: 198 QISICYLILSANLLNYGTQKIKGSWGWRISLAMAAVPASILTIGSLFLPETPNSIIQRNK 257
Q++I IL ANL+NYGT ++ + GWR+SL +AAVPA I+ IGS LP+TPNS+++R K
Sbjct: 177 QMAITIGILIANLINYGTSQMAKN-GWRVSLGLAAVPAVIMVIGSFVLPDTPNSMLERGK 235
Query: 258 DHQKAEEILQIVRNTTDVKAELDDII---RASSKIIH---RI-----YRPQLVMAILIPF 306
+++A E+LQ +R +V E D+ A+ K+ + I YRP LV IPF
Sbjct: 236 -YEQAREMLQKIRGADNVDEEFQDLCDACEAAKKVDNPWKNIFQQAKYRPALVFCSAIPF 294
Query: 307 -QQVTRVNVISFNAPVLFMTIKVRKSTSLLMSAVVPDGIGTVSTILPMILADKLGRTVLF 365
QQ+T +NVI F APVLF T+ SL+ SAV+ + VST++ + D+ GR +LF
Sbjct: 295 FQQITGINVIMFYAPVLFKTLGFADDASLI-SAVITGAVNVVSTLVSIYAVDRYGRRILF 353
Query: 366 LLGGIQILVSQVMIRSIMAAQLGDHGGFNI--GYAYLILFLICVYKAGFAFSRGPLGWLV 423
L GGIQ++VSQ+++ +++ + G G + A IL IC+Y AGFA+S GPLGWLV
Sbjct: 354 LEGGIQMIVSQIVVGTLIGMKFGTTGSGTLTPATADWILAFICLYVAGFAWSWGPLGWLV 413
Query: 424 PSEIFPLEIRSAGQSITVAVDLLFTFLVAQTFLAMLCHFKAGVFFCFGGWVAFMTTFVHF 483
PSEI PLEIR AGQ+I V+V++ FTFL+ Q FL MLCH K G+F+ FGG VA MT F++F
Sbjct: 414 PSEICPLEIRPAGQAINVSVNMFFTFLIGQFFLTMLCHMKFGLFYFFGGMVAVMTVFIYF 473
Query: 484 FLPETKYMPIEFMDKVWREHWFWRKIV-DDV----GEESKIQAV 522
LPETK +PIE M +VW++H FW++ + DD GEE+ ++ V
Sbjct: 474 LLPETKGVPIEEMGRVWKQHPFWKRYMPDDAVIGGGEENYVKEV 517
|
|
| TAIR|locus:2092221 AT3G19940 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 751 (269.4 bits), Expect = 4.1e-100, Sum P(2) = 4.1e-100
Identities = 156/328 (47%), Positives = 217/328 (66%)
Query: 198 QISICYLILSANLLNYGTQKIKGSWGWRISLAMAAVPASILTIGSLFLPETPNSIIQRNK 257
Q++I IL ANL+NYGT K+ GWR+SL +AAVPA ++ IGS LP+TPNS+++R K
Sbjct: 177 QMAITIGILVANLINYGTSKM-AQHGWRVSLGLAAVPAVVMVIGSFILPDTPNSMLERGK 235
Query: 258 DHQKAEEILQIVRNTTDVKAELDDII---RASSK-------IIHRIYRPQLVMAILIPF- 306
+ ++A+++L+ +R +V E D+I A+ K I+ YRP L+ IPF
Sbjct: 236 N-EEAKQMLKKIRGADNVDHEFQDLIDAVEAAKKVENPWKNIMESKYRPALIFCSAIPFF 294
Query: 307 QQVTRVNVISFNAPVLFMTIKVRKSTSLLMSAVVPDGIGTVSTILPMILADKLGRTVLFL 366
QQ+T +NVI F APVLF T+ +L MSAV+ + +ST + + D+ GR +LFL
Sbjct: 295 QQITGINVIMFYAPVLFKTLGFGDDAAL-MSAVITGVVNMLSTFVSIYAVDRYGRRLLFL 353
Query: 367 LGGIQILVSQVMIRSIMAAQLGDHGGFNI--GYAYLILFLICVYKAGFAFSRGPLGWLVP 424
GGIQ+ + Q+++ S + A+ G G + A IL ICVY AGFA+S GPLGWLVP
Sbjct: 354 EGGIQMFICQLLVGSFIGARFGTSGTGTLTPATADWILAFICVYVAGFAWSWGPLGWLVP 413
Query: 425 SEIFPLEIRSAGQSITVAVDLLFTFLVAQTFLAMLCHFKAGVFFCFGGWVAFMTTFVHFF 484
SEI PLEIR AGQ+I V+V++ FTFL+ Q FL MLCH K G+F+ F VA MT F++F
Sbjct: 414 SEICPLEIRPAGQAINVSVNMFFTFLIGQFFLTMLCHMKFGLFYFFASMVAIMTVFIYFL 473
Query: 485 LPETKYMPIEFMDKVWREHWFWRKIVDD 512
LPETK +PIE M +VW++HWFW+K + +
Sbjct: 474 LPETKGVPIEEMGRVWKQHWFWKKYIPE 501
|
|
| TAIR|locus:2166781 STP11 "sugar transporter 11" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 760 (272.6 bits), Expect = 5.3e-100, Sum P(2) = 5.3e-100
Identities = 162/333 (48%), Positives = 225/333 (67%)
Query: 198 QISICYLILSANLLNYGTQKIKGSWGWRISLAMAAVPASILTIGSLFLPETPNSIIQRNK 257
Q++I IL+AN++NY T K++ GWR+SL +A VPA ++ +G FLP+TPNSI++R
Sbjct: 177 QLAITIGILAANIVNYVTPKLQNGIGWRLSLGLAGVPAVMMLVGCFFLPDTPNSILERG- 235
Query: 258 DHQKAEEILQIVRNTTDVKAELDDIIRA---SSKIIH---RI----YRPQLVMAILIPF- 306
+ +KA+E+LQ +R T +V+ E +++ A + K+ H I YRPQL IPF
Sbjct: 236 NKEKAKEMLQKIRGTMEVEHEFNELCNACEAAKKVKHPWTNIMQARYRPQLTFCTFIPFF 295
Query: 307 QQVTRVNVISFNAPVLFMTIKVRKSTSLLMSAVVPDGIGTVSTILPMILADKLGRTVLFL 366
QQ+T +NVI F APVLF TI SL+ SAV+ + +STI+ + DK GR LFL
Sbjct: 296 QQLTGINVIMFYAPVLFKTIGFGNDASLI-SAVITGLVNVLSTIVSIYSVDKFGRRALFL 354
Query: 367 LGGIQILVSQVMIRSIMAAQLGDHGGFNI-GY-AYLILFLICVYKAGFAFSRGPLGWLVP 424
GG Q++V+Q+ + S++ + G +G N+ G A +IL LIC+Y AGFA+S GPLGWLVP
Sbjct: 355 QGGFQMIVTQIAVGSMIGWKFGFNGEGNLSGVDADIILALICLYVAGFAWSWGPLGWLVP 414
Query: 425 SEIFPLEIRSAGQSITVAVDLLFTFLVAQTFLAMLCHFKAGVFFCFGGWVAFMTTFVHFF 484
SEI PLEIRSAGQS+ V+V++ FTF + Q FL MLCH K G+F+ F G V MT F++F
Sbjct: 415 SEICPLEIRSAGQSLNVSVNMFFTFFIGQFFLTMLCHMKFGLFYFFAGMVLIMTIFIYFL 474
Query: 485 LPETKYMPIEFMDKVWREHWFWRKIVD-DVGEE 516
LPETK +PIE M KVW+EH +W K + D G++
Sbjct: 475 LPETKGVPIEEMGKVWKEHRYWGKYSNNDDGDD 507
|
|
| TAIR|locus:2009323 AT1G34580 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 693 (249.0 bits), Expect = 4.2e-96, Sum P(2) = 4.2e-96
Identities = 139/321 (43%), Positives = 211/321 (65%)
Query: 205 ILSANLLNYGTQKIKGSWGWRISLAMAAVPASILTIGSLFLPETPNSIIQRNKDHQKAEE 264
+++ANL+NYGT + GWRISL +AAVPA+I+T+G LF+ +TP+S++ R K +
Sbjct: 182 VVAANLINYGTDSHRN--GWRISLGLAAVPAAIMTVGCLFISDTPSSLLARGKHDEAHTS 239
Query: 265 ILQI--VRNTTDVKAELDDIIRASS------------KIIHRIYRPQLVMAILIP-FQQV 309
+L++ V N DV+ EL +++R+S I+ R YRP LV+A++IP FQQ+
Sbjct: 240 LLKLRGVENIADVETELAELVRSSQLAIEARAELFMKTILQRRYRPHLVVAVVIPCFQQL 299
Query: 310 TRVNVISFNAPVLFMTIKVRKSTSLLMSAVVPDGIGTVSTILPMILADKLGRTVLFLLGG 369
T + V +F APVLF ++ +L+ + ++ + S +L ++ D+ GR LF+ GG
Sbjct: 300 TGITVNAFYAPVLFRSVGFGSGPALIATFIL-GFVNLGSLLLSTMVIDRFGRRFLFIAGG 358
Query: 370 IQILVSQVMIRSIMAAQLGDHGGFNI--GYAYLILFLICVYKAGFAFSRGPLGWLVPSEI 427
I +L+ Q+ + ++A +G G + GYA ++ L+C+Y AGF +S GPL WLVPSEI
Sbjct: 359 ILMLLCQIAVAVLLAVTVGATGDGEMKKGYAVTVVVLLCIYAAGFGWSWGPLSWLVPSEI 418
Query: 428 FPLEIRSAGQSITVAVDLLFTFLVAQTFLAMLCHFKAGVFFCFGGWVAFMTTFVHFFLPE 487
FPL+IR AGQS++VAV+ TF ++QTFLA LC FK G F +GGW+ MT FV FLPE
Sbjct: 419 FPLKIRPAGQSLSVAVNFAATFALSQTFLATLCDFKYGAFLFYGGWIFTMTIFVIMFLPE 478
Query: 488 TKYMPIEFMDKVWREHWFWRK 508
TK +P++ M +VW +HW+W++
Sbjct: 479 TKGIPVDSMYQVWEKHWYWQR 499
|
|
| TAIR|locus:2195995 STP14 "sugar transport protein 14" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 684 (245.8 bits), Expect = 3.0e-91, Sum P(2) = 3.0e-91
Identities = 143/335 (42%), Positives = 210/335 (62%)
Query: 193 IDFLLQISICYLILSANLLNYGTQKIKGSWGWRISLAMAAVPASILTIGSLFLPETPNSI 252
++ L Q++ C IL ANL+NY T++I WGWR+SL +A VPA ++ +G L LPETPNS+
Sbjct: 173 VNQLFQLTTCIGILVANLINYKTEQIH-PWGWRLSLGLATVPAILMFLGGLVLPETPNSL 231
Query: 253 IQRNKDHQKAEEILQIVRNTTDVKAELDDIIRASS----------KIIHRIYRPQLVM-A 301
+++ K +KA+ +L VR T +++AE D++ AS ++ R RPQLV+ A
Sbjct: 232 VEQGK-LEKAKAVLIKVRGTNNIEAEFQDLVEASDAARAVKNPFRNLLARRNRPQLVIGA 290
Query: 302 ILIP-FQQVTRVNVISFNAPVLFMTIKVRKSTSLLMSAVVPDGIGTVSTILPMILADKLG 360
I +P FQQ+T +N I F APV+F ++ S SL+ S + + V+ I+ M ADK G
Sbjct: 291 IGLPAFQQLTGMNSILFYAPVMFQSLGFGGSASLISSTITNAAL-VVAAIMSMYSADKFG 349
Query: 361 RTVLFLLGGIQILVSQVMIRSIMAAQLGDHGGFNIGYAYLILFLICVYKAGFAFSRGPLG 420
R L L +++ V++ +A + G+ +++ LIC++ + S GP+G
Sbjct: 350 RRFLLLEASVEMFCYMVVVGVTLALKFGEGKELPKSLGLILVVLICLFVLAYGRSWGPMG 409
Query: 421 WLVPSEIFPLEIRSAGQSITVAVDLLFTFLVAQTFLAMLCHFKAGVFFCFGGWVAFMTTF 480
WLVPSE+FPLE RSAGQS+ V V+L FT L+AQ FL LCH K G+F F G + M +F
Sbjct: 410 WLVPSELFPLETRSAGQSVVVCVNLFFTALIAQCFLVSLCHLKYGIFLLFAGLILGMGSF 469
Query: 481 VHFFLPETKYMPIEFMDKVWREHWFWRKIVDDVGE 515
V+F LPETK +PIE + +WR+HW W+K V+DV E
Sbjct: 470 VYFLLPETKQVPIEEVYLLWRQHWLWKKYVEDVDE 504
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q8L7R8 | STP3_ARATH | No assigned EC number | 0.4869 | 0.9042 | 0.9182 | yes | no |
| Q07423 | HEX6_RICCO | No assigned EC number | 0.5767 | 0.9176 | 0.9392 | N/A | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 522 | |||
| pfam00083 | 449 | pfam00083, Sugar_tr, Sugar (and other) transporter | 4e-60 | |
| TIGR00879 | 481 | TIGR00879, SP, MFS transporter, sugar porter (SP) | 4e-50 | |
| PRK10077 | 479 | PRK10077, xylE, D-xylose transporter XylE; Provisi | 2e-30 | |
| TIGR00883 | 394 | TIGR00883, 2A0106, metabolite-proton symporter | 2e-06 |
| >gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter | Back alignment and domain information |
|---|
Score = 204 bits (521), Expect = 4e-60
Identities = 133/505 (26%), Positives = 220/505 (43%), Gaps = 70/505 (13%)
Query: 9 CIVAATSGLIFGYDIGVSGGVTLMEPFLKKCFLEVYKKMKEDPKISNYGKFDSQLLAAFT 68
+VAA G +FGYD GV G + F K+ + L
Sbjct: 2 ALVAALGGFLFGYDTGVIGAFLTLIKFFKRFGALTSIGACAASTV---------LSGLIV 52
Query: 69 SSLYIAGLIAFLFASKVTRAFGRKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQC 128
S + LI LFA K+ FGRK S+L
Sbjct: 53 SIFSVGCLIGSLFAGKLGDRFGRKKSLL--------------------------IGNVLF 86
Query: 129 SCCSCCYSNHCSIGGAAFNIYMLILGCVLLGVGIGFTSQSIQRFNQFAYMILLSSNFETT 188
+ + G + YMLI+G V++G+G+G S + + +S
Sbjct: 87 VIGALL--QGFAKG---KSFYMLIVGRVIVGLGVGGISVLVP--------MYISEIAPKK 133
Query: 189 RLSHIDFLLQISICYLILSANLLNYGTQKIKGSWGWRISLAMAAVPASILTIGSLFLPET 248
+ L Q+ I + IL A ++ G K S GWRI L + VPA +L IG LFLPE+
Sbjct: 134 LRGALGSLYQLGITFGILVAAIIGLGLNKYSNSDGWRIPLGLQFVPAILLLIGLLFLPES 193
Query: 249 PNSIIQRNKDHQKAEEILQIVRNTTDVKAELDDIIRASSKII------------HRIYRP 296
P ++ + K ++A +L +R +DV E+ + + + + + R
Sbjct: 194 PRWLVLKGK-LEEARAVLAKLRGVSDVDQEIQEEKDSLERSVEAEKASWLELFRGKTVRQ 252
Query: 297 QLVMAILIP-FQQVTRVNVISFNAPVLFMTIKVRKSTSLLMSAVVPDGIGTVSTILPMIL 355
+L+M +++ FQQ+T +N I + +P +F T+ + S SLL++ +V + V T + + L
Sbjct: 253 RLLMGVMLQIFQQLTGINAIFYYSPTIFETLGL--SDSLLVTIIV-GVVNFVFTFIAIFL 309
Query: 356 ADKLGRTVLFLLGGIQILVSQVMIRSIMAAQLGDHGGFNIGYAYLILFLICVYKAGFAFS 415
D+ GR L LLG + + +++ + + G + + I ++ A FA
Sbjct: 310 VDRFGRRPLLLLGAAGMAICFLVL-GVALLGVAKSKG----AGIVAIVFILLFIAFFALG 364
Query: 416 RGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLVAQTFLAMLCHFKAGVFFCFGGWVA 475
GP+ W++ SE+FPL +R +I A + L FL+ F + VF F G +
Sbjct: 365 WGPVPWVIVSELFPLGVRPKAMAIATAANWLANFLIGFLFPIITGAIGGYVFLVFAGLLV 424
Query: 476 FMTTFVHFFLPETKYMPIEFMDKVW 500
FV FF+PETK +E +D+++
Sbjct: 425 LFILFVFFFVPETKGRTLEEIDELF 449
|
Length = 449 |
| >gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Score = 178 bits (453), Expect = 4e-50
Identities = 141/525 (26%), Positives = 212/525 (40%), Gaps = 104/525 (19%)
Query: 4 FIVLSCIVAATSGLIFGYDIGVSGGVTLMEPFLKKCFLEVYKKMKEDPKISNYGKFDSQL 63
+ L ++AA GL+FGYD GV GG + F K S+ + S L
Sbjct: 25 KVALLSLIAAIGGLMFGYDTGVIGGALALPAFEFK----------FTSANSDS--YSSSL 72
Query: 64 LAAFTSSLYIAGLIAFLFASKVTRAFGRKASILPKFQGRNADAIGLQKTEKELSYKRIET 123
S + G I LFA ++ FGRK S+L I L
Sbjct: 73 WGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLL---------IIAL-------------- 109
Query: 124 NLEQCSCCSCCYSNHCSIGGAAFNIY--------MLILGCVLLGVGIGFTSQ-------S 168
+ GA MLI+G VLLG+G+G S
Sbjct: 110 ---------------LFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSE 154
Query: 169 IQRFNQFAYMILLSSNFETTRLSHIDFLLQISICYLILSANLLNYGTQKIKGSWGWRISL 228
I + L Q++I + IL A G + + GWRI L
Sbjct: 155 IAPKALRGALTSLY---------------QLAITFGILVAYGFGSGKVSLNNTLGWRIPL 199
Query: 229 AMAAVPASILTIGSLFLPETPNSIIQRNKDHQKAEEILQIVRNTTDVKAELDDIIR---- 284
+ +PA +L +G FLPE+P ++ + + ++A + L +R T+ EL D +
Sbjct: 200 GLQLIPAGLLFLGLFFLPESPRWLVGKGR-VEEARKSLARLRGTSGEDKELLDELELIDI 258
Query: 285 -------------ASSKIIHRIYRPQLVMAILIP-FQQVTRVNVISFNAPVLFMTIKVRK 330
S R R +L + +++ FQQ T +N I + +P +F V
Sbjct: 259 KRSIEKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVST 318
Query: 331 STSLLMSAVVPDGIGTVSTILPMILADKLGRTVLFLLGGIQILVSQVMIRSIMAAQLGDH 390
+ L+S +V + T + + L D+ GR L L+G + + ++ I+ A
Sbjct: 319 DHAFLVSIIV-GAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVL-GILGASFV-- 374
Query: 391 GGFNIGYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFL 450
G + + + I ++ A FA GP+ W++ SEIFPL +R G SI VA + L F+
Sbjct: 375 TGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFI 434
Query: 451 VAQTFLAMLCHFKAGV-FFCFGGWVAFMTTFVHFFLPETKYMPIE 494
V F ML G F FGG FV+FFLPETK +E
Sbjct: 435 VGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETKGRTLE 479
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481 |
| >gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Score = 123 bits (310), Expect = 2e-30
Identities = 136/543 (25%), Positives = 212/543 (39%), Gaps = 133/543 (24%)
Query: 10 IVAATSGLIFGYDIGVSGGVTLMEPFLKKCFLEVYKKMKEDPKISNYGKFDSQLLAAFTS 69
+VA GL+FGYD V G L F+ P+ + + LL +
Sbjct: 15 LVATLGGLLFGYDTAVISGT---VESLNTVFV--------APQNLSES-AANSLLGFCVA 62
Query: 70 SLYIAGLIAFLFASKVTRAFGRKASILPKFQGRNADAI-----GLQKTEKELSYKRIETN 124
S I +I + FGR+ S+ A+ L E + I
Sbjct: 63 SALIGCIIGGALGGYCSNRFGRRDSLK-------IAAVLFFISALGSAWPEFGFTSI--- 112
Query: 125 LEQCSCCSCCYSNHCSIGGA-AFNIYMLILGCVLLGVGIGFTSQ---------------- 167
+ G F IY I+G G+G+G S
Sbjct: 113 ------------GPDNTGYVPEFVIYR-IIG----GIGVGLASMLSPMYIAEIAPAHIRG 155
Query: 168 SIQRFNQFAYMILLSSNFETTRLSHIDF--LLQISICYLIL---SANLLNYGTQKIKGSW 222
+ FNQFA I F L+ + Y I A+ LN +
Sbjct: 156 KLVSFNQFA----------------IIFGQLVVYFVNYFIARSGDASWLN--------TD 191
Query: 223 GWRISLAMAAVPASILTIGSLFLPETPNSIIQRNKDHQKAEEILQIVRNTTDVKAELDDI 282
GWR A A+PA + + F+PETP ++ R K ++AE IL+ + T L +I
Sbjct: 192 GWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQ-EQAEGILRKIMGNTLATQALQEI 250
Query: 283 IRASSKIIHRIYRPQL-------VMAILIP-FQQVTRVNVISFNAPVLFMTIKVRKSTSL 334
+ S + L V+ +++ FQQ +NV+ + AP +F T+ +L
Sbjct: 251 -KHSLDHGRKTGGKLLMFGVGVIVIGVMLSVFQQFVGINVVLYYAPEIFKTLGASTDIAL 309
Query: 335 LMSAVVPDGIGTVS-TILPMILADKLGRTVLFLLGGIQILVSQVMIRSIMAAQLGDHGGF 393
L + +V G+ ++ T+L ++ DK GR L ++G + MA G F
Sbjct: 310 LQTIIV--GVINLTFTVLAIMTVDKFGRKPLQIIGAL-----------GMAI-----GMF 351
Query: 394 NIGYA-------YLILFLICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLL 446
++G A + L + Y A FA S GP+ W++ SEIFP IR +I VA +
Sbjct: 352 SLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWI 411
Query: 447 FTFLVAQTFLAM------LCHFKAGVFFCFGGWVAFMTT-FVHFFLPETKYMPIEFMDKV 499
+ V+ TF M + HF G + G + + F+ F+PETK +E M+ +
Sbjct: 412 ANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEEMEAL 471
Query: 500 WRE 502
W
Sbjct: 472 WEP 474
|
Length = 479 |
| >gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 2e-06
Identities = 51/261 (19%), Positives = 90/261 (34%), Gaps = 55/261 (21%)
Query: 197 LQISICYLILSANLLNYGTQKIKG-----SWGWRISLAMAAVPASILTIGSLFLPETPNS 251
Q+ +L A L + G WGWRI ++AV I L ETP
Sbjct: 137 QQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIGLYLRRNLEETPVF 196
Query: 252 IIQRNKDHQKAEEILQIVRNTTDVKAELDDIIRASSKIIHRIYRPQLVMAILIPFQQVTR 311
+ K +K I + + +R ++ + +
Sbjct: 197 EKAQEKHKKKRGPIAETLTK----------------------HRKPFLLGLGL------- 227
Query: 312 VNVISFNAPVLFMTIKVRK--STSLLMSAVVPDGIGTVSTILPMI-------LADKLGRT 362
VI+ +T + + +L +SA + +S IL I L+D++GR
Sbjct: 228 --VIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRR 285
Query: 363 VLFLLGGIQILVSQVMIRSIMAAQLGDHGGFNIGYAYLILFLICVYKAGFAFSRGPLGWL 422
+ ++ + + V + + G L FL+ GP+G
Sbjct: 286 PVLIIFTVLAALLAVPLLMALLDS---------GSFTLFFFLVLGMALIGGMYTGPMGSF 336
Query: 423 VPSEIFPLEIRSAGQSITVAV 443
+P E+FP E+R G S+ +
Sbjct: 337 LP-ELFPTEVRYTGASLAYNL 356
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc [Transport and binding proteins, Unknown substrate]. Length = 394 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 522 | |||
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 100.0 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 100.0 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 100.0 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 100.0 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 100.0 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 100.0 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 100.0 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 100.0 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 100.0 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 100.0 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 100.0 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 100.0 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 100.0 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 100.0 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 100.0 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 100.0 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.98 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.98 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.98 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.97 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.97 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.97 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.97 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.97 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 99.97 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.97 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.97 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.97 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.97 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.97 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.97 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.96 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.96 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.96 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.96 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.96 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.96 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 99.96 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.96 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.96 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.96 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.96 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.95 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.95 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.95 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.95 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.95 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.95 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.95 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.95 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.95 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.95 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.95 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.95 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.95 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 99.95 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.94 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.94 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.94 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.94 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 99.94 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.94 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.94 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.94 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.94 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 99.93 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.93 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.93 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.93 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.93 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.93 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.93 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.93 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.92 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.92 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.92 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.91 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.91 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.91 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.9 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.9 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.9 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.89 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.89 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.89 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 99.88 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.88 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 99.87 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 99.86 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 99.86 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.86 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.85 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.85 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.84 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.84 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 99.82 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.82 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.81 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.81 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 99.79 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.77 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 99.77 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 99.75 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.75 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 99.73 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.71 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.7 | |
| PRK11462 | 460 | putative transporter; Provisional | 99.69 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.69 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 99.68 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.66 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.66 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 99.63 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 99.6 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 99.59 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.49 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 99.48 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 99.43 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 99.42 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 99.39 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 99.33 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.32 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.31 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.31 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.28 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.26 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.25 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.25 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.25 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.24 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 99.24 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.2 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.19 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.17 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.17 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 99.16 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.15 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.15 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.14 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.14 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.13 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.13 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.13 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.13 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.13 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 99.12 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.12 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.11 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.1 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.1 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.1 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.1 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.1 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.09 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.09 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.09 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.08 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.07 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.07 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.06 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.05 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.05 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.05 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.04 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.04 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.03 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.03 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.02 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.02 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.01 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.01 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.0 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 98.99 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 98.99 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 98.99 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 98.99 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 98.99 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 98.99 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 98.98 | |
| PRK11043 | 401 | putative transporter; Provisional | 98.98 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 98.97 | |
| PRK12382 | 392 | putative transporter; Provisional | 98.96 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 98.95 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 98.95 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 98.94 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 98.93 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 98.93 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 98.9 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 98.88 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 98.88 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 98.86 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 98.84 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 98.81 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 98.8 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 98.8 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 98.8 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 98.8 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 98.79 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 98.79 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 98.78 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 98.78 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 98.78 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 98.77 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 98.74 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 98.73 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 98.73 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 98.7 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 98.69 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 98.69 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 98.69 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 98.69 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 98.68 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 98.68 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 98.67 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 98.65 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 98.64 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 98.61 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 98.6 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 98.56 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 98.53 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 98.51 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 98.51 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 98.5 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 98.5 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 98.47 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 98.47 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 98.46 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 98.46 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 98.42 | |
| KOG3810 | 433 | consensus Micronutrient transporters (folate trans | 98.41 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 98.41 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 98.37 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 98.36 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 98.34 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 98.23 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 98.21 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 98.2 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 98.19 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 98.19 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 98.18 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 98.15 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 98.15 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 98.14 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 98.13 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 98.12 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 98.1 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 98.09 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 98.03 | |
| PRK11462 | 460 | putative transporter; Provisional | 97.98 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 97.98 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 97.95 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 97.95 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 97.85 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 97.83 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 97.78 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 97.66 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 97.66 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 97.56 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 97.55 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 97.52 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 97.48 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 97.27 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 97.19 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 96.9 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 96.85 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 96.79 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 96.79 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 96.76 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 96.57 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 96.55 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 96.54 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 96.46 | |
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 96.46 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 96.42 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 96.27 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 95.52 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 95.51 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 95.13 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 95.1 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 94.79 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 94.22 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 94.01 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 93.67 | |
| PF07672 | 267 | MFS_Mycoplasma: Mycoplasma MFS transporter; InterP | 93.61 | |
| PF01733 | 309 | Nucleoside_tran: Nucleoside transporter; InterPro: | 93.38 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 92.63 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 91.19 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 89.7 | |
| KOG3097 | 390 | consensus Predicted membrane protein [Function unk | 89.63 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 89.32 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 88.24 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 88.11 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 87.81 | |
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 86.68 | |
| KOG3880 | 409 | consensus Predicted small molecule transporter inv | 84.87 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 84.4 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 83.85 |
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-43 Score=364.60 Aligned_cols=447 Identities=25% Similarity=0.374 Sum_probs=377.5
Q ss_pred hHHHHHHHHHHHHHHhhhhhcchhhccccccHHHHHHhhhhhhhcccCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHH
Q 047115 2 TIFIVLSCIVAATSGLIFGYDIGVSGGVTLMEPFLKKCFLEVYKKMKEDPKISNYGKFDSQLLAAFTSSLYIAGLIAFLF 81 (522)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~~~~~s~~~~~~~i~~~~ 81 (522)
+++....+++++++++.+||+.+++|... ...+++.++.+.+..+.|.-.+ .-+...+.+.+++.+|.++|+++
T Consensus 6 t~~L~~~~~~~~~gsf~~Gy~~~~iNap~---~~i~~f~n~t~~~r~g~~~s~~---~~~~lwS~~vs~f~iG~~~Gs~~ 79 (485)
T KOG0569|consen 6 TRRLLLAVIVATLGSFQFGYNIGVVNAPQ---ELIKSFINETLIERYGLPLSDS---TLDLLWSLIVSIFFIGGMIGSFS 79 (485)
T ss_pred cHHHHHHHHHHHHhchhhhhhheecCchH---HHHHHHHHHHHHHhcCCCCChH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888889999999999999999874 7788888777776664322111 12335788899999999999999
Q ss_pred HHHhhhhhccccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhhhhHHHHHHHhhh---hhhHHHHHHHHHH
Q 047115 82 ASKVTRAFGRKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCCYSNHCSIGGAA---FNIYMLILGCVLL 158 (522)
Q Consensus 82 ~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a---~~~~~l~~~r~l~ 158 (522)
.|.++||+|||..+. .+.++..++.++..++ +++.+++++|++.
T Consensus 80 ~~~la~~~GRK~~l~---------------------------------~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~ 126 (485)
T KOG0569|consen 80 SGLLADRFGRKNALL---------------------------------LSNLLAVLAALLMGLSKSAPSFEMLILGRLIV 126 (485)
T ss_pred HHHHHHhhcchHHHH---------------------------------HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 999999999999998 7777777777766654 7889999999999
Q ss_pred HhhhhhhhccccccccccccccccccccCCcc-hhHHHHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHhhHHHHHH
Q 047115 159 GVGIGFTSQSIQRFNQFAYMILLSSNFETTRL-SHIDFLLQISICYLILSANLLNYGTQKIKGSWGWRISLAMAAVPASI 237 (522)
Q Consensus 159 G~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~-g~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~gwr~~f~i~~~~~~~ 237 (522)
|+..|......+.| +.| ..|++. |....+.+.+.++|.+++..++..-. ...+..|++.+....+++++
T Consensus 127 Gl~~gl~~~~~pmy--------l~E-~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~i-lGt~~~W~~l~~~~~i~~~~ 196 (485)
T KOG0569|consen 127 GLACGLSTGLVPMY--------LTE-ISPKNLRGALGTLLQIGVVIGILLGQVLGLPSL-LGTEDLWPYLLAFPLIPALL 196 (485)
T ss_pred HHHhHHHHHHHHHH--------Hhh-cChhhhccHHHHHHHHHHHHHHHHHHHHccHHh-cCCCcchHHHHHHHHHHHHH
Confidence 99999999999999 999 999999 99999999999999999987764222 11234799999999999999
Q ss_pred HHHHhcccCCChHHHHH-hCCCHHHHHHHHHHHcCCcchHHHHHHHHHHH-------------Hhhcc-ccchhHHHHHH
Q 047115 238 LTIGSLFLPETPNSIIQ-RNKDHQKAEEILQIVRNTTDVKAELDDIIRAS-------------SKIIH-RIYRPQLVMAI 302 (522)
Q Consensus 238 ~~~~~~~lpesp~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~l~~-~~~~~~~~~~~ 302 (522)
.++...++||||||+.. +++ .++|++.++.+++.+|.+++.++..+.. .++++ +..|+...+.+
T Consensus 197 ~l~~l~~~PESPk~Ll~~k~~-~~~A~~sl~~y~G~~~~~~~~e~~~~e~~~~~~~~~~~~sl~~~~~~~~lR~~~~i~~ 275 (485)
T KOG0569|consen 197 QLALLPFLPESPKYLLIKKGD-EEEARKALKFYRGKEDVEAEIEEMLREIEEEELEKKKQISLRQLLKNPTLRRPLLIGI 275 (485)
T ss_pred HHHHHhcCCCCcchHHHHcCC-HHHHHHHHHHHhCCCcchhHHHHHHHHHHHhccccccCCcHHHHhcCcchhHHHHHHH
Confidence 99999999999999988 666 9999999999999876544433322211 15554 45666666666
Q ss_pred HHH-HhhhccchhhHhcHHHHHHHcCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhhccchHHHHHHHHHHHHHHHHHHH
Q 047115 303 LIP-FQQVTRVNVISFNAPVLFMTIKVRKSTSLLMSAVVPDGIGTVSTILPMILADKLGRTVLFLLGGIQILVSQVMIRS 381 (522)
Q Consensus 303 ~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~ 381 (522)
.+. ..++.+.+...+|...++++.|++..++. +.....++..++.++++.++.||.|||++++.+..++.+..+++..
T Consensus 276 ~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~-~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~ 354 (485)
T KOG0569|consen 276 VVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQ-YANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSI 354 (485)
T ss_pred HHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHH
Confidence 666 88999999999999999999999999999 9999999999999999999999999999999999999888887776
Q ss_pred HHHHhhCCCCCCcchhhHHHHHHHHHHHHhhhccccccccccccccCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047115 382 IMAAQLGDHGGFNIGYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLVAQTFLAMLCH 461 (522)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 461 (522)
........ .++..+..+...+.+...++.+.+|++|.+.+|++|++.|++++++...++++..++....+..+.+.
T Consensus 355 ~~~l~~~~----~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~ 430 (485)
T KOG0569|consen 355 ALFLSNSF----GSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNV 430 (485)
T ss_pred HHHHHHHh----hhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65433111 02344556788889999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHhcc
Q 047115 462 FKAGVFFCFGGWVAFMTTFVHFFLPETKYMPIEFMDKVWREH 503 (522)
Q Consensus 462 ~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 (522)
.|...++.+.+.+++..+..++.+||||+|+.+|+.++.+++
T Consensus 431 ~g~~~filF~i~~~~~~i~~~~~lPETkgr~~~eI~~~~~~~ 472 (485)
T KOG0569|consen 431 IGPYVFILFVIPLAIFLIYLYRYLPETKGRTPYEIIEELEKR 472 (485)
T ss_pred hcchhhHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHhC
Confidence 998899999999999999999999999999999998887765
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-39 Score=340.26 Aligned_cols=437 Identities=24% Similarity=0.402 Sum_probs=329.4
Q ss_pred HHHHHHHHHHHHHHhhhhhcchhhccccccHHHHHHhhhhhhhcccCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHH
Q 047115 3 IFIVLSCIVAATSGLIFGYDIGVSGGVTLMEPFLKKCFLEVYKKMKEDPKISNYGKFDSQLLAAFTSSLYIAGLIAFLFA 82 (522)
Q Consensus 3 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~~~~~s~~~~~~~i~~~~~ 82 (522)
.++...+++++++.+.+|||.+++++.. |.+.+.+. +....++++++.+.+++.+++.++..++++++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~----------~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~ 75 (479)
T PRK10077 8 SYIFSITLVATLGGLLFGYDTAVISGTV--ESLNTVFV----------APQNLSESAANSLLGFCVASALIGCIIGGALG 75 (479)
T ss_pred hHHHHHHHHHHHHHHhcCcccceehHhH--HHHHHHhc----------ccccccccCChhHHHHHHHHHHHHHHHHHHHH
Confidence 4567888889999999999999999876 66777663 33455668899999999999999999999999
Q ss_pred HHhhhhhccccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhhhhHHHHHHHhhh------------hhhHH
Q 047115 83 SKVTRAFGRKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCCYSNHCSIGGAA------------FNIYM 150 (522)
Q Consensus 83 g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a------------~~~~~ 150 (522)
|+++||+|||++++ ++.++++++.+.++++ ++++.
T Consensus 76 G~l~dr~Grr~~~~---------------------------------~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (479)
T PRK10077 76 GYCSNRFGRRDSLK---------------------------------IAAVLFFISALGSAWPEFGFTSIGPDNTGYVPE 122 (479)
T ss_pred HHHHHHhccHHHHH---------------------------------HHHHHHHHHHHHHHhhccccccccccchhHHHH
Confidence 99999999999999 9999988888877763 23567
Q ss_pred HHHHHHHHHhhhhhhhccccccccccccccccccccCCcc-hhHHHHHHHHHHHHHHHHHHHHhhhhcc-----CCCCch
Q 047115 151 LILGCVLLGVGIGFTSQSIQRFNQFAYMILLSSNFETTRL-SHIDFLLQISICYLILSANLLNYGTQKI-----KGSWGW 224 (522)
Q Consensus 151 l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~-g~~~~~~~~~~~lG~~~~~~~~~~l~~~-----~~~~gw 224 (522)
++++|+++|++.|...+...++ ++| ++|+++ ++++++.+.+..+|.++++.++..+... .+.+||
T Consensus 123 l~~~R~l~G~~~g~~~~~~~~~--------i~e-~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gW 193 (479)
T PRK10077 123 FVIYRIIGGIGVGLASMLSPMY--------IAE-IAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGW 193 (479)
T ss_pred HHHHHHHHhhhHhHHhhHHHHH--------HHh-hCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCCh
Confidence 8899999999999999999999 999 888887 9999999999999999998887665421 134689
Q ss_pred HHHHHhhHHHHHHHHHHhcccCCChHHHHHhCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHHhhc-c--c---cchhHH
Q 047115 225 RISLAMAAVPASILTIGSLFLPETPNSIIQRNKDHQKAEEILQIVRNTTDVKAELDDIIRASSKII-H--R---IYRPQL 298 (522)
Q Consensus 225 r~~f~i~~~~~~~~~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~--~---~~~~~~ 298 (522)
|+.|++.+++.++..+..+++||+|+++..+++ .+++++..++..+.++.+...++.++..++-. + + ......
T Consensus 194 r~~f~~~~~~~~~~~~~~~~l~~s~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (479)
T PRK10077 194 RYMFASEAIPALLFLMLLYFVPETPRYLMSRGK-QEQAEGILRKIMGNTLATQALQEIKHSLDHGRKTGGKLLMFGVGVI 272 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCcHHHHHcCC-HHHHHHHHHHHcCChhHHHHHHHHHHHHHHhhhhhhhhcchhHHHH
Confidence 999999888777776777889999999877777 77777666666554443333333322221000 0 0 001111
Q ss_pred HHHHHHH-HhhhccchhhHhcHHHHHHHcCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhhccchHHHHHHHHHHHHHHH
Q 047115 299 VMAILIP-FQQVTRVNVISFNAPVLFMTIKVRKSTSLLMSAVVPDGIGTVSTILPMILADKLGRTVLFLLGGIQILVSQV 377 (522)
Q Consensus 299 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~ 377 (522)
....... +.+..+.+...++.|.+.++.|++..... ......++..+++.++.++++||+|||+++..+.++..++.+
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~-~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~ 351 (479)
T PRK10077 273 VIGVMLSVFQQFVGINVVLYYAPEIFKTLGASTDIAL-LQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMF 351 (479)
T ss_pred HHHHHHHHHHHHhChhHHHHHHHHHHHHcCCCCchHH-HHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHH
Confidence 2222222 44455566667788998888999887777 777778889999999999999999999999998888888776
Q ss_pred HHHHHHHHhhCCCCCCcchhhHHHHHHHHHHHHhhhccccccccccccccCchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 047115 378 MIRSIMAAQLGDHGGFNIGYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLVAQTFLA 457 (522)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~ 457 (522)
.+..... ............+++..+++....+..+.+++|.+|++.|+++.|+.+..++++.++++.+++.
T Consensus 352 ~l~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~ 422 (479)
T PRK10077 352 SLGTAFY---------TQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPM 422 (479)
T ss_pred HHHHHHh---------cCcccHHHHHHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 6654321 1111223333444555555555667777888999999999999999999999999999888775
Q ss_pred HH------Hhcc-chhhHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHhccc
Q 047115 458 ML------CHFK-AGVFFCFGGWVAFMTTFVHFFLPETKYMPIEFMDKVWREHW 504 (522)
Q Consensus 458 ~~------~~~g-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 504 (522)
+. ++.+ ...+.+++.++++..++.+++.||+|+++.||.++.+++..
T Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~ 476 (479)
T PRK10077 423 MDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEEMEALWEPET 476 (479)
T ss_pred HHhccchhhhccCccHHHHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHhhcc
Confidence 54 3444 34566666666666667777889999999988877765543
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-38 Score=337.57 Aligned_cols=441 Identities=30% Similarity=0.524 Sum_probs=368.6
Q ss_pred HHHHHHHHHHHHHHhhhhhcchhhccccccHHHHHHhhhhhhhcccCCCCCCCCCCCch--hHHHHHHHHHHHHHHHHHH
Q 047115 3 IFIVLSCIVAATSGLIFGYDIGVSGGVTLMEPFLKKCFLEVYKKMKEDPKISNYGKFDS--QLLAAFTSSLYIAGLIAFL 80 (522)
Q Consensus 3 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~--~~~~~~~s~~~~~~~i~~~ 80 (522)
......++.+.++++.+|+| +..+....+....++.....+. +.+. ++.+++.++..++.+++++
T Consensus 41 ~~~~~~~~~~~~~~~~fg~~-g~~g~~s~~~~~~~~~~~~~~~------------~~~~~~~~~s~~~s~~~lga~~g~l 107 (513)
T KOG0254|consen 41 PFVILLALVAALGGLLFGYD-GDIGGISGALDFLQRFASLYDL------------STGEYSVRQGLLTSILNLGALVGSL 107 (513)
T ss_pred eehHHHHHHHHHHHHHhCcc-cccccchhhHHHHHhccccccc------------ccchhHHHHHHHHHHHHHHHHHHHH
Confidence 35677888999999999998 4333333234555554321111 1122 5679999999999999999
Q ss_pred HHHHhhhhhccccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhhhhHHHHHHHhhhhhhHHHHHHHHHHHh
Q 047115 81 FASKVTRAFGRKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCCYSNHCSIGGAAFNIYMLILGCVLLGV 160 (522)
Q Consensus 81 ~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~l~~~r~l~G~ 160 (522)
++|+++|++|||+.++ ++.+++.++.+++++++|+++++++|+++|+
T Consensus 108 ~~g~l~d~~GRk~~l~---------------------------------~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~ 154 (513)
T KOG0254|consen 108 LAGRLGDRIGRKKTLL---------------------------------LAVVLFLIGAIIIALAPSWYQLIVGRILTGL 154 (513)
T ss_pred HHHHHHHHhhhHHHHH---------------------------------HHHHHHHHHHHHHHHhhhHHHHHHHHHHhcc
Confidence 9999999999999999 9999999999999999999999999999999
Q ss_pred hhhhhhccccccccccccccccccccCCcc-hhHHHHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHhhHHHHHHHH
Q 047115 161 GIGFTSQSIQRFNQFAYMILLSSNFETTRL-SHIDFLLQISICYLILSANLLNYGTQKIKGSWGWRISLAMAAVPASILT 239 (522)
Q Consensus 161 ~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~-g~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~gwr~~f~i~~~~~~~~~ 239 (522)
|.|+.....+.| ++| ..|++. |...+..+....+|..++..++....+. . ++||..+.+..+++++..
T Consensus 155 g~G~~~~~~piy--------~sE-iap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~-~-~~Wr~~~~~~~i~~~~~~ 223 (513)
T KOG0254|consen 155 GVGGASVLAPVY--------ISE-IAPAHIRGTLVSLYQLFITIGILLGYCINYGTSKV-Y-AGWRIPLGLALIPAVILA 223 (513)
T ss_pred chhhhhhcchhh--------Hhh-cCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhccC-C-ccHHHHHHHHHHHHHHHH
Confidence 999999999999 999 999987 9999999999999999998888877654 1 589999999999998888
Q ss_pred HHhcccCCChHHHHHhCCCHHHHHHHHHHHcC--CcchHHHHHHHHHH-------------HHhhccccchhHHHHHHHH
Q 047115 240 IGSLFLPETPNSIIQRNKDHQKAEEILQIVRN--TTDVKAELDDIIRA-------------SSKIIHRIYRPQLVMAILI 304 (522)
Q Consensus 240 ~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-------------~~~l~~~~~~~~~~~~~~~ 304 (522)
+..+++||+|+|+.++++ .+++++.++++++ +.+.+.+.++++.. ..+++++..+++..+.+.+
T Consensus 224 ~~~~~~pesp~~L~~~g~-~~~a~~~l~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~l 302 (513)
T KOG0254|consen 224 LGMLFLPESPRWLIEKGR-LEEAKRSLKRLRGLSPEDVEVELELLKIKLLVEAEVAEGKASWGELFSPKVRKRLIIGLLL 302 (513)
T ss_pred HHHHhCCCChHHHHHcCC-hHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhhhcccccccHHHhcCcchHHHHHHHHHH
Confidence 888899999999999999 9999999999998 45666665554411 1134455577778878888
Q ss_pred H-HhhhccchhhHhcHHHHHHHcCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHH
Q 047115 305 P-FQQVTRVNVISFNAPVLFMTIKVRKSTSLLMSAVVPDGIGTVSTILPMILADKLGRTVLFLLGGIQILVSQVMIRSIM 383 (522)
Q Consensus 305 ~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~ 383 (522)
. ++++++.+...+|.+.+++..|.+... . ......++..+++.++...+.||+|||++++.+...+.++.++++...
T Consensus 303 ~~fqq~tG~~~~~~Y~~~if~~~g~~~~~-~-~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~~ 380 (513)
T KOG0254|consen 303 QLFQQLTGINYVFYYSTTIFKSAGLKSDT-F-LASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSICLVILAVVG 380 (513)
T ss_pred HHHHHHhCCceEEeehHHHHHhcCCCCch-H-HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHH
Confidence 8 999999999999999999999988765 4 677888899999999999999999999999999999999999888776
Q ss_pred HHhhCCCCCCcchhhHHHHHHHHHHHHhhhccccccccccccccCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 047115 384 AAQLGDHGGFNIGYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLVAQTFLAMLCHFK 463 (522)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g 463 (522)
.....+. .......+..+...+++...+..++++++|.+.+|.+|.+.|+.+.++...++++.+++....+....+..+
T Consensus 381 ~~~~~~~-~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~~ 459 (513)
T KOG0254|consen 381 VFALYYP-NSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFITEALG 459 (513)
T ss_pred HHhccCC-CcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4432111 023355677888888999999999999999999999999999999999999999999999888888888776
Q ss_pred -chhhHHHHHHHHHHHH-HHHhhccCCCCCCHHHHHHHHhccc
Q 047115 464 -AGVFFCFGGWVAFMTT-FVHFFLPETKYMPIEFMDKVWREHW 504 (522)
Q Consensus 464 -~~~~~~~~~~~~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 504 (522)
...+..+++++.+... ++++++||||+++.||+++.+.++.
T Consensus 460 ~~~~f~~f~~~~~~~~~~fv~~~~pETkg~sleei~~~~~~~~ 502 (513)
T KOG0254|consen 460 IGGTFGYFGGICLLSLIIFVFFFVPETKGLTLEEINELFEEGI 502 (513)
T ss_pred ccchHHHHHHHHHHHHHHHheEEcccCCCCcHHHHHHHHHcCC
Confidence 6777888888887777 7899999999999999998776543
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-38 Score=340.50 Aligned_cols=430 Identities=19% Similarity=0.153 Sum_probs=308.2
Q ss_pred ChHHHHHHHHHHHHHHhhhhhcchhhccccccHHHHHHhhhhhhhcccCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHH
Q 047115 1 MTIFIVLSCIVAATSGLIFGYDIGVSGGVTLMEPFLKKCFLEVYKKMKEDPKISNYGKFDSQLLAAFTSSLYIAGLIAFL 80 (522)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~~~~~s~~~~~~~i~~~ 80 (522)
++++++.++++++++.+.+|||.+.++.+. |.+.++++. .+.+.++.+.+++.+...+++.++++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~g~d~~~~~~~~--~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~ig~~ig~~ 74 (502)
T TIGR00887 10 FGWQHFRAIVIAGVGFFTDSYDLFCISLVT--KMLGYVYYH-------------GKGPLPSSVSAAVNGSASIGTLAGQL 74 (502)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhcc-------------CcccchHHHHHHHHHHHHHHHHHHHH
Confidence 357888999999999999999999999876 443332210 11245677889999999999999999
Q ss_pred HHHHhhhhhccccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhhhhHHHHHHHhhhhh------hHHHHHH
Q 047115 81 FASKVTRAFGRKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCCYSNHCSIGGAAFN------IYMLILG 154 (522)
Q Consensus 81 ~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~------~~~l~~~ 154 (522)
++|+++||+|||+++. ++.+++.++.++++++++ ++.++++
T Consensus 75 ~~g~l~d~~Grr~~~~---------------------------------~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 121 (502)
T TIGR00887 75 FFGWLADKLGRKRVYG---------------------------------MELIIMIIATVASGLSPGSSPKSVMATLCFW 121 (502)
T ss_pred HHHHHHHhhccHHHHH---------------------------------HHHHHHHHHHHHHHHccCcccchHHHHHHHH
Confidence 9999999999999999 999999999998888765 7899999
Q ss_pred HHHHHhhhhhhhccccccccccccccccccccCCcc-hhHHHHHHHHHHHHHHHHHHHHhhhhcc---------------
Q 047115 155 CVLLGVGIGFTSQSIQRFNQFAYMILLSSNFETTRL-SHIDFLLQISICYLILSANLLNYGTQKI--------------- 218 (522)
Q Consensus 155 r~l~G~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~-g~~~~~~~~~~~lG~~~~~~~~~~l~~~--------------- 218 (522)
|+++|++.|...+....+ ++| ++|+++ ++..++.+....+|.++++.++..+...
T Consensus 122 r~l~G~~~g~~~~~~~~~--------~~e-~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (502)
T TIGR00887 122 RFWLGVGIGGDYPLSAII--------TSE-FATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCT 192 (502)
T ss_pred HHHHHHHHhhhhHHHHHH--------HHH-hcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccc
Confidence 999999999999999999 999 899888 9999999999999999999887655321
Q ss_pred -----CCCCchHHHHHhhHHHHHHHHHHhcccCCChHHHHHhCCCHHHHHHHHHHHcCCc--chHHHHH-------HHHH
Q 047115 219 -----KGSWGWRISLAMAAVPASILTIGSLFLPETPNSIIQRNKDHQKAEEILQIVRNTT--DVKAELD-------DIIR 284 (522)
Q Consensus 219 -----~~~~gwr~~f~i~~~~~~~~~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-------~~~~ 284 (522)
...++||+++.+.+++.++..+..+++||||+|+..++++.+++++.+++..+.+ +..++.+ +.+.
T Consensus 193 ~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~~lpESpr~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (502)
T TIGR00887 193 GSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRYTADVAKDVEQAASDMSAVLQVKIEAEPDEVEKASTAVEVPKA 272 (502)
T ss_pred ccccchhcccHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhCcchHHHHHHHHHHhccccccCcccccchhccccchhh
Confidence 0125899999999998888888888999999999888772244555555543321 1111110 0111
Q ss_pred HHHhhccccc---hhHHHHHHHH-HHhhhccchhhHhcHHHHHHHcCCCCchhhH-----------HHhHHHHHHHHHHH
Q 047115 285 ASSKIIHRIY---RPQLVMAILI-PFQQVTRVNVISFNAPVLFMTIKVRKSTSLL-----------MSAVVPDGIGTVST 349 (522)
Q Consensus 285 ~~~~l~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-----------~~~~~~~~~~~~~~ 349 (522)
..++++++.. .++..+.... .+.....++....|.|.++++.|++...... .......++.+++.
T Consensus 273 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~ 352 (502)
T TIGR00887 273 SWSDFFTHFFKWRHGKHLLGTAGSWFLLDIAFYGVNLNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGY 352 (502)
T ss_pred hHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2334443211 1122222222 2333333445667789999888887553210 12333455667788
Q ss_pred HhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcchhhHHHHHHHHHHHHhhhccccccccccccccCc
Q 047115 350 ILPMILADKLGRTVLFLLGGIQILVSQVMIRSIMAAQLGDHGGFNIGYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFP 429 (522)
Q Consensus 350 ~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p 429 (522)
++.++++||+|||+.+..+..+..++..++...... .... ......+.....+..+..++.+.+.+|.+|
T Consensus 353 ~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~--------~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p 422 (502)
T TIGR00887 353 WVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNH--------LSTH--GFLAIYVLAQFFANFGPNATTFIVPGEVFP 422 (502)
T ss_pred HHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHh--------cchh--HHHHHHHHHHHHHhcCCCchhhhhhhccCc
Confidence 899999999999999888877776666555543210 0011 111222222233344566677888899999
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------c-chhhHHHHHHHHHHHHHHHhhccCCCCCCHHHHHH
Q 047115 430 LEIRSAGQSITVAVDLLFTFLVAQTFLAMLCHF----------K-AGVFFCFGGWVAFMTTFVHFFLPETKYMPIEFMDK 498 (522)
Q Consensus 430 ~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~----------g-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 498 (522)
++.|+++.|+.+.++++++++++.+.+.+.+.. + ...++++++++++..+ ..+++||||+++.||+++
T Consensus 423 ~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i-~~~~lpEt~~~~leei~~ 501 (502)
T TIGR00887 423 TRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGIL-FTLLIPETKGKSLEELSG 501 (502)
T ss_pred hhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHH-HheEeccCCCCCHHhhhC
Confidence 999999999999999999999999999998843 2 2456667666665544 456789999999887654
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-38 Score=340.24 Aligned_cols=412 Identities=15% Similarity=0.133 Sum_probs=320.9
Q ss_pred hHHHHHHHHHHHHHHhhhhhcchhhccccccHHHHHHhhhhhhhcccCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHH
Q 047115 2 TIFIVLSCIVAATSGLIFGYDIGVSGGVTLMEPFLKKCFLEVYKKMKEDPKISNYGKFDSQLLAAFTSSLYIAGLIAFLF 81 (522)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~~~~~s~~~~~~~i~~~~ 81 (522)
++++|.++++++++.+.+++|...++.+. |.+.+++ +++..+.+++.++++++.++++++
T Consensus 162 ~~~~~~l~~i~~l~~~~~g~d~~~is~il--p~i~~~~------------------gls~~~~g~l~s~~~lG~iiG~li 221 (742)
T TIGR01299 162 GRFQWALFFVLGLALMADGVEVFVVGFVL--PSAEKDL------------------CIPDSGKGMLGLIVYLGMMVGAFF 221 (742)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHh------------------CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 56788889999999999999999988765 6666666 678899999999999999999999
Q ss_pred HHHhhhhhccccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhhhhHHHHHHHhhhhhhHHHHHHHHHHHhh
Q 047115 82 ASKVTRAFGRKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCCYSNHCSIGGAAFNIYMLILGCVLLGVG 161 (522)
Q Consensus 82 ~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~l~~~r~l~G~~ 161 (522)
+|+++||+|||++++ ++.++.++++++++++++++.++++|+++|++
T Consensus 222 ~G~LsDR~GRR~~li---------------------------------i~lil~~i~~ll~afa~s~~~llv~R~l~G~g 268 (742)
T TIGR01299 222 WGGLADKLGRKQCLL---------------------------------ICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFG 268 (742)
T ss_pred HHHHHHHhCcHHHHH---------------------------------HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 999999999999999 99999999999999999999999999999999
Q ss_pred hhhhhccccccccccccccccccccCCcc-hhHHHHHHHHHHHHHHHHHHHHhhhhccC----------CCCchHHHHHh
Q 047115 162 IGFTSQSIQRFNQFAYMILLSSNFETTRL-SHIDFLLQISICYLILSANLLNYGTQKIK----------GSWGWRISLAM 230 (522)
Q Consensus 162 ~g~~~~~~~~~~~~~~~~~i~~~~~~~~~-g~~~~~~~~~~~lG~~~~~~~~~~l~~~~----------~~~gwr~~f~i 230 (522)
.|+..+....+ ++| ++|+++ ++..+++.+++.+|.++++.++..+.... ...+||+.+++
T Consensus 269 ~g~~~p~~~~~--------isE-~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~~~~~~gWR~l~~i 339 (742)
T TIGR01299 269 IGGAIPIVFSY--------FAE-FLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIV 339 (742)
T ss_pred HHHHHHHHHHH--------HHH-HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhccccccccccHHHHHHH
Confidence 99999999999 999 899888 99999999999999999998876654321 12479999999
Q ss_pred hHHHHHHHHHHhcccCCChHHHHHhCCCHHHHHHHHHHHcCCcch-----HHH-----HHHH------------------
Q 047115 231 AAVPASILTIGSLFLPETPNSIIQRNKDHQKAEEILQIVRNTTDV-----KAE-----LDDI------------------ 282 (522)
Q Consensus 231 ~~~~~~~~~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~-----~~~~------------------ 282 (522)
.+++.++.++..+++||||+|+..+++ .+++.+.+++++..+.. ... .+..
T Consensus 340 ~~lp~ll~ll~~~~lPESPrwL~~~gr-~~eA~~iL~~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (742)
T TIGR01299 340 CAFPCVFAIGALTFMPESPRFFLENGK-HDEAWMILKLIHDTNMRAKGHPEKVFSVNHIKTIHQEDELIEIESDTGTWYQ 418 (742)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHCCC-HHHHHHHHHHHhcCCCCCcCchhHHHHHHHHHHhhhhhhhhcccccccchhh
Confidence 988888888888899999999999999 99999988887654311 000 0000
Q ss_pred -------------HHHHHhhccccchhHHHHHHHHHHhhhccchhhHhcHHHHHHHc-----------------------
Q 047115 283 -------------IRASSKIIHRIYRPQLVMAILIPFQQVTRVNVISFNAPVLFMTI----------------------- 326 (522)
Q Consensus 283 -------------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------- 326 (522)
.....+++++++++++++.+++.+....+++.+..|.|.++++.
T Consensus 419 ~~~~~~~~~~~~~~~~~~~lf~~~~~~~tl~l~~~wf~~~~~yygl~~w~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 498 (742)
T TIGR01299 419 RCFVRALSEGGGIWGNFLRCFNPEVREITIKLMGVWFTLSFGYYGLSVWFPDMIKHLQADDYAALTKNFPGDKVAHFSFN 498 (742)
T ss_pred cchhhhhhhhhhHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccchhccccc
Confidence 00123566777788888888777888888899999999876431
Q ss_pred -------------------CC-----C----------------C------------------------------------
Q 047115 327 -------------------KV-----R----------------K------------------------------------ 330 (522)
Q Consensus 327 -------------------g~-----~----------------~------------------------------------ 330 (522)
|+ + .
T Consensus 499 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 578 (742)
T TIGR01299 499 FTLENQIHRGGEYDNDKFIGLKFKSVSFEDSLFEECTFDDVTSSNTFFKNCTFIDTLFENTDFEEYKFIDSEFQNCSFLH 578 (742)
T ss_pred cchhhhhccccccccchhhcccccccccccccccccceeeccccchhhhccchhhhhccccchhhhhhhhhhhhhccccc
Confidence 00 0 0
Q ss_pred -----------c-----hhhHHHhHHHHHHHHHHHHhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCc
Q 047115 331 -----------S-----TSLLMSAVVPDGIGTVSTILPMILADKLGRTVLFLLGGIQILVSQVMIRSIMAAQLGDHGGFN 394 (522)
Q Consensus 331 -----------~-----~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (522)
+ ... ....+..++.+++.++.++++||+|||+++.++.++.+++.+++.+..
T Consensus 579 ~~~~c~~~~~~~~~~~~~~~-~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~----------- 646 (742)
T TIGR01299 579 NKEGCPIDFDGDDEGAYMIY-FVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGN----------- 646 (742)
T ss_pred cCCccCccCCccchhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHc-----------
Confidence 0 012 335566788999999999999999999999888888777776665431
Q ss_pred chhhHHHHHHHHHHHHhhhccccccccccccccCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHH
Q 047115 395 IGYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLVAQTFLAMLCHFKAGVFFCFGGWV 474 (522)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 474 (522)
. ....+++.++.+++.... .+....+++|.+|++.|++++|+.++...+|++++|++.+.+.+.....++.+++++.
T Consensus 647 -s-~~~ll~~~~l~g~~~~~~-~~~~~a~~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~~~~~pf~i~a~~l 723 (742)
T TIGR01299 647 -S-ESAMIALLCLFGGLSIAA-WNALDVLTVELYPSDKRATAFGFLNALCKAAAVLGILIFGSFVGITKAAPILFASAAL 723 (742)
T ss_pred -c-HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 1 122233333333333333 3455677899999999999999999999999999999999887754445555555555
Q ss_pred HHHHHHHHhhccCCCCCC
Q 047115 475 AFMTTFVHFFLPETKYMP 492 (522)
Q Consensus 475 ~i~~~~~~~~~~~~~~~~ 492 (522)
++. .++..++|||+++.
T Consensus 724 ll~-~ll~~~LPET~~~~ 740 (742)
T TIGR01299 724 ACG-GLLALKLPDTRGQV 740 (742)
T ss_pred HHH-HHHHHhCCCCcccc
Confidence 444 44455679998764
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-42 Score=363.19 Aligned_cols=431 Identities=26% Similarity=0.496 Sum_probs=339.3
Q ss_pred HHHHHHHhhhhhcchhhccccccHHHHHHhhhhhhhcccCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 047115 10 IVAATSGLIFGYDIGVSGGVTLMEPFLKKCFLEVYKKMKEDPKISNYGKFDSQLLAAFTSSLYIAGLIAFLFASKVTRAF 89 (522)
Q Consensus 10 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~ 89 (522)
++++++++.+|||.+.++.....+.....+..+.... +.+.++.+.++..++..+|..+|++++|.++||+
T Consensus 3 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~ 73 (451)
T PF00083_consen 3 LIASLGGFLFGYDLGLIGSFASLLGFLQFFGWSSSES---------SCEKSSLLSSLLTSSFFIGAIVGALIFGFLADRY 73 (451)
T ss_pred EeeHHHHHHHHHHHHHHhhHHhhhhhhhccccccccc---------cccchHHHHHHHHHHHHhhhcccccccccccccc
Confidence 4567788999999999987764333333332211111 1112567889999999999999999999999999
Q ss_pred ccccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhhhhHHHHHHHhhhh---hhHHHHHHHHHHHhhhhhhh
Q 047115 90 GRKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCCYSNHCSIGGAAF---NIYMLILGCVLLGVGIGFTS 166 (522)
Q Consensus 90 Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~---~~~~l~~~r~l~G~~~g~~~ 166 (522)
|||+.++ .+.++..+++++.++++ |++.+.++|+++|++.|...
T Consensus 74 GRk~~~~---------------------------------~~~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~ 120 (451)
T PF00083_consen 74 GRKPALI---------------------------------ISALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAY 120 (451)
T ss_pred ccccccc---------------------------------cccccccccccccccccccccccccccccccccccccccc
Confidence 9999999 99999999999999999 99999999999999999999
Q ss_pred ccccccccccccccccccccCCcc-hhHHHHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHhhHHHHHHHHHHhccc
Q 047115 167 QSIQRFNQFAYMILLSSNFETTRL-SHIDFLLQISICYLILSANLLNYGTQKIKGSWGWRISLAMAAVPASILTIGSLFL 245 (522)
Q Consensus 167 ~~~~~~~~~~~~~~i~~~~~~~~~-g~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~gwr~~f~i~~~~~~~~~~~~~~l 245 (522)
+....+ +.| ..|+++ ++..++.+.+..+|.+++..++.......++++||+.+.+.+++.++.++...++
T Consensus 121 ~~~~~~--------~~E-~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~~~~~~ 191 (451)
T PF00083_consen 121 VVSPIY--------ISE-IAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVLLLRFFL 191 (451)
T ss_pred cccccc--------ccc-cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999 999 988888 9999999999999999999888777544434679999999999988888888899
Q ss_pred CCChHHHHHhCCCHHHHHHHHHHHcCCcchHHHHHHHHHHH----------Hhhcccc-chhHHHHHHHHH-Hhhhccch
Q 047115 246 PETPNSIIQRNKDHQKAEEILQIVRNTTDVKAELDDIIRAS----------SKIIHRI-YRPQLVMAILIP-FQQVTRVN 313 (522)
Q Consensus 246 pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~l~~~~-~~~~~~~~~~~~-~~~~~~~~ 313 (522)
||||+|+..++| .+|+++.+++.++.+..+++.++..++. .++++++ .+++....+.+. +.+..+.+
T Consensus 192 pESP~wL~~~~~-~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~ 270 (451)
T PF00083_consen 192 PESPRWLLSKGR-DEEAEKVLRKLRGKEIEDEEIEEIKAEKKESQESKASWRDLFRNKKYRKRLLIALLLQFFQQFSGIN 270 (451)
T ss_pred ccccceeccccc-ccccccccccccccccccccccccccccccccccceeeeeccccccccccccccccccccccccccc
Confidence 999999999999 8899998888765544333333322221 2344432 345566666666 66677777
Q ss_pred hhHhcHHHHHHHcCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC
Q 047115 314 VISFNAPVLFMTIKVRKSTSLLMSAVVPDGIGTVSTILPMILADKLGRTVLFLLGGIQILVSQVMIRSIMAAQLGDHGGF 393 (522)
Q Consensus 314 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (522)
....|.+.+++..+.+.. . .......+..+++.++..++.||+|||++++.+...+.++.+.+...... ..+ .
T Consensus 271 ~~~~~~~~i~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~--~~~--~ 343 (451)
T PF00083_consen 271 FIFYYSPSIFENAGISNS--F-LATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFL--GVS--S 343 (451)
T ss_pred cccccccccccccccccc--c-cccccccccccccccccccccccccccccccccccccccccccccccccc--ccc--c
Confidence 788888988888888777 2 44556667788888888899999999999998888877777666511100 000 0
Q ss_pred cchhhHHHHHHHHHHHHhhhccccccccccccccCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-chhhHHHHH
Q 047115 394 NIGYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLVAQTFLAMLCHFK-AGVFFCFGG 472 (522)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~ 472 (522)
++......+...+++...++.+++++.+.+.+|.+|++.|+++.|+...++++++++.+.+...+.+..+ ...+.++++
T Consensus 344 ~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~ 423 (451)
T PF00083_consen 344 SSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAG 423 (451)
T ss_pred ccccccccceeeeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhHH
Confidence 0112334444555555667777888888999999999999999999999999999999999988888877 778888888
Q ss_pred HHHHHHHHHHhhccCCCCCCHHHHHHH
Q 047115 473 WVAFMTTFVHFFLPETKYMPIEFMDKV 499 (522)
Q Consensus 473 ~~~i~~~~~~~~~~~~~~~~~~~~~~~ 499 (522)
++.+..+++++++||||++++||+++.
T Consensus 424 ~~~i~~i~~~~~lpET~g~~l~ei~~~ 450 (451)
T PF00083_consen 424 VCLIAIIFVYFFLPETKGKTLEEIQEM 450 (451)
T ss_pred HHHHHHhheeEEEeeCCCCCHHHHHhh
Confidence 888888899999999999999999875
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-34 Score=299.55 Aligned_cols=430 Identities=31% Similarity=0.536 Sum_probs=314.4
Q ss_pred HHHHHHHHHHHHHHhhhhhcchhhccccccHHHHHHhhhhhhhcccCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHH
Q 047115 3 IFIVLSCIVAATSGLIFGYDIGVSGGVTLMEPFLKKCFLEVYKKMKEDPKISNYGKFDSQLLAAFTSSLYIAGLIAFLFA 82 (522)
Q Consensus 3 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~~~~~s~~~~~~~i~~~~~ 82 (522)
|+.+..++++.++.+..++|.+.++... +....++..+. ..+-+.+..+.+++.+++.++..++++++
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 91 (481)
T TIGR00879 24 WKVALLSLIAAIGGLMFGYDTGVIGGAL--ALPAFEFKFTS----------ANSDSYSSSLWGLVVSIFLVGGFIGALFA 91 (481)
T ss_pred HHHHHHHHHHHHHHHhcccccchhhhhh--hcHHHHHhcCC----------cccCCCChhHHHHHHHHHHHHHHHHHHHh
Confidence 5566777778888899999999998876 45555543210 01114578999999999999999999999
Q ss_pred HHhhhhhccccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhhhhHHHHHHHhhh---hhhHHHHHHHHHHH
Q 047115 83 SKVTRAFGRKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCCYSNHCSIGGAA---FNIYMLILGCVLLG 159 (522)
Q Consensus 83 g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a---~~~~~l~~~r~l~G 159 (522)
|+++||+|||++++ .+.++++++.+++.+. .+++.++++|+++|
T Consensus 92 g~l~d~~grr~~~~---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G 138 (481)
T TIGR00879 92 GWLSDRFGRKKSLL---------------------------------IIALLFVIGAILMGLAAFALSVEMLIVGRVLLG 138 (481)
T ss_pred hHhhhhhhhHHHHH---------------------------------HHHHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 99999999999999 9999999999888554 34568999999999
Q ss_pred hhhhhhhccccccccccccccccccccCCcc-hhHHHHHHHHHHHHHHHHHHHH---hhhhccCCCCchHHHHHhhHHHH
Q 047115 160 VGIGFTSQSIQRFNQFAYMILLSSNFETTRL-SHIDFLLQISICYLILSANLLN---YGTQKIKGSWGWRISLAMAAVPA 235 (522)
Q Consensus 160 ~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~-g~~~~~~~~~~~lG~~~~~~~~---~~l~~~~~~~gwr~~f~i~~~~~ 235 (522)
++.+...+....+ ++| ++|+++ ++++++.+.+..+|..+++.++ .... ...+||+.|++.++..
T Consensus 139 ~~~~~~~~~~~~~--------i~~-~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~---~~~~w~~~f~~~~~~~ 206 (481)
T TIGR00879 139 IGVGIASALVPMY--------LSE-IAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLN---NTLGWRIPLGLQLIPA 206 (481)
T ss_pred hhhhHHHhHHHHH--------HHc-cCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCC---CCccHHHHHHHHHHHH
Confidence 9999999999899 999 888888 9999999999999999999998 4333 2358999999987777
Q ss_pred HHHHHHhcccCCChHHHHHhCCCHHHHHHHHHHHcCCcchHHHHHH------HHHH---------HHhhcccc--chhHH
Q 047115 236 SILTIGSLFLPETPNSIIQRNKDHQKAEEILQIVRNTTDVKAELDD------IIRA---------SSKIIHRI--YRPQL 298 (522)
Q Consensus 236 ~~~~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~---------~~~l~~~~--~~~~~ 298 (522)
++..+..+++||+|++...+++ .++.++..++..+.++.+.+..+ ..+. ..+.++.. ..++.
T Consensus 207 ~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (481)
T TIGR00879 207 GLLFLGLFFLPESPRWLVGKGR-VEEARKSLARLRGTSGEDKELLDELELIDIKRSIEKRSVQPSWGSLFSSTRRIRRRL 285 (481)
T ss_pred HHHHHHHhcCCCChHHHHHcCC-hHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHhhccccHHHHHhcCchhHHHH
Confidence 7777777889999987766666 55555444443332211111100 0000 01122111 23444
Q ss_pred HHHHHHH-HhhhccchhhHhcHHHHHHHcCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhhccchHHHHHHHHHHHHHHH
Q 047115 299 VMAILIP-FQQVTRVNVISFNAPVLFMTIKVRKSTSLLMSAVVPDGIGTVSTILPMILADKLGRTVLFLLGGIQILVSQV 377 (522)
Q Consensus 299 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~ 377 (522)
++..++. +......+....+.|.+.++.|++..+.. .......++.+++.++.++++||++||+.+..+.....++.+
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~ 364 (481)
T TIGR00879 286 FLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHAF-LVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLF 364 (481)
T ss_pred HHHHHHHHHHHHhCCeehHHHHHHHHHHcCCCchHHH-HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 4444444 55555566677888998899999997777 888888999999999999999999999998888777766666
Q ss_pred HHHHHHHHhhCCCCCCcchhhHHHHHHHHHHHHhhhccccccccccccccCchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 047115 378 MIRSIMAAQLGDHGGFNIGYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLVAQTFLA 457 (522)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~ 457 (522)
++.......... .+....+..+...+++..+++.+..+....+..|.+|++.|+++.++.+...++++++++.+.+.
T Consensus 365 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~ 441 (481)
T TIGR00879 365 VLGILGASFVTG---SSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPT 441 (481)
T ss_pred HHHHHhhcccCC---cccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555322110000 00011333344445555666666667777787899999999999999999999999999999999
Q ss_pred HHHhccc-hhhHHHHHHHHHHHHHHHhhccCCCCCCHH
Q 047115 458 MLCHFKA-GVFFCFGGWVAFMTTFVHFFLPETKYMPIE 494 (522)
Q Consensus 458 ~~~~~g~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 494 (522)
+.++.++ ..+.+.++++++.+++.+++.||+|+++.+
T Consensus 442 ~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~~~~~~~~ 479 (481)
T TIGR00879 442 MLESIGVGGVFIFFGGLNVLGLIFVYFFLPETKGRTLE 479 (481)
T ss_pred HHHhcCccceehhHHHHHHHHHHHHheecccCCCCChh
Confidence 9988775 345666666667777777778888776543
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-34 Score=306.47 Aligned_cols=401 Identities=16% Similarity=0.145 Sum_probs=271.2
Q ss_pred HHHHHHHHHHHhhhhhcchhhccccccHHHHHHhhhhhhhcccCCCCCCCCCCCch--hHHHH--HHHHHHHHHHHHHHH
Q 047115 6 VLSCIVAATSGLIFGYDIGVSGGVTLMEPFLKKCFLEVYKKMKEDPKISNYGKFDS--QLLAA--FTSSLYIAGLIAFLF 81 (522)
Q Consensus 6 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~--~~~~~--~~s~~~~~~~i~~~~ 81 (522)
+...+.+.++.++++||.++++.+. |.+.++++++ .++ +..+. ..++.++++.+++++
T Consensus 15 ~~~~~~~~~g~~~~~~d~~~~~~~~--~~i~~~~~~~----------------~~~~~~~~~~~~~~~~~~l~~~ig~~~ 76 (490)
T PRK10642 15 RKAITAASLGNAMEWFDFGVYGFVA--YALGKVFFPG----------------ADPSVQMIAALATFSVPFLIRPLGGLF 76 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhhCCC----------------CCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777889999999999998775 6666666531 112 12222 258888999999999
Q ss_pred HHHhhhhhccccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhhhhHHHHHHHhhhhhhHH--------HHH
Q 047115 82 ASKVTRAFGRKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCCYSNHCSIGGAAFNIYM--------LIL 153 (522)
Q Consensus 82 ~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~--------l~~ 153 (522)
+|+++||+|||+++. .+.++++++++++++++|+.. +++
T Consensus 77 ~G~l~Dr~Grr~~l~---------------------------------~~~~l~~i~~~~~a~~~~~~~~g~~a~~~l~~ 123 (490)
T PRK10642 77 FGMLGDKYGRQKILA---------------------------------ITIVIMSISTFCIGLIPSYATIGIWAPILLLL 123 (490)
T ss_pred HHHHHHhcccHHHHH---------------------------------HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 999999999999999 999999999999999999864 889
Q ss_pred HHHHHHhhhhhhhccccccccccccccccccccCCcc-hhHHHHHHHHHHHHHHHHHHHHhhhhcc-----CCCCchHHH
Q 047115 154 GCVLLGVGIGFTSQSIQRFNQFAYMILLSSNFETTRL-SHIDFLLQISICYLILSANLLNYGTQKI-----KGSWGWRIS 227 (522)
Q Consensus 154 ~r~l~G~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~-g~~~~~~~~~~~lG~~~~~~~~~~l~~~-----~~~~gwr~~ 227 (522)
+|+++|++.|..++....+ ++| ++|+++ |+..++.+.+..+|..+++.+...+... ..++|||+.
T Consensus 124 ~R~l~G~g~g~~~~~~~~~--------~~e-~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~ 194 (490)
T PRK10642 124 CKMAQGFSVGGEYTGASIF--------VAE-YSPDRKRGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIP 194 (490)
T ss_pred HHHHHHhHhHhhHHHHHHH--------HHH-hCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHH
Confidence 9999999999999999999 999 888888 9999999999888988888766544321 124799999
Q ss_pred HHhhHHHHHHHHHHhcccCCChHHHHHhCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHHhhccccchhHHHHHHHHHHh
Q 047115 228 LAMAAVPASILTIGSLFLPETPNSIIQRNKDHQKAEEILQIVRNTTDVKAELDDIIRASSKIIHRIYRPQLVMAILIPFQ 307 (522)
Q Consensus 228 f~i~~~~~~~~~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 307 (522)
|++++++.++.++...++||+|++...+++ .++.++ +... ++.+.+.+ +++++ +++.........+.
T Consensus 195 f~i~~~~~l~~~~~~~~~~esp~~~~~~~~-~~~~~~--~~~~--~~~~~~~~-------~~~~~-~~~~~~~~~~~~~~ 261 (490)
T PRK10642 195 FFIALPLGIIGLYLRHALEETPAFQQHVDK-LEQGDR--EGLQ--DGPKVSFK-------EIATK-HWRSLLTCIGLVIA 261 (490)
T ss_pred HHHHHHHHHHHHHHHHcCCCChhHHHHHHh-hhhhcc--cccc--ccccCCHH-------HHHHH-hHHHHHHHHHHHHH
Confidence 999887766666666789999987543222 111100 0000 00000111 23332 23333333333333
Q ss_pred hhccchhhHhcHHHHHH-HcCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHh
Q 047115 308 QVTRVNVISFNAPVLFM-TIKVRKSTSLLMSAVVPDGIGTVSTILPMILADKLGRTVLFLLGGIQILVSQVMIRSIMAAQ 386 (522)
Q Consensus 308 ~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (522)
....++.+..|.|.+++ ..|++..+.. .......++.+++.++.|+++||+|||+.+..+.+...+....+....
T Consensus 262 ~~~~~~~~~~~~p~~l~~~~g~s~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~--- 337 (490)
T PRK10642 262 TNVTYYMLLTYMPSYLSHNLHYSEDHGV-LIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILI--- 337 (490)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH---
Confidence 34455567778999885 5688887776 677777888999999999999999999988776654333322211111
Q ss_pred hCCCCCCcchhhHHHHHHHHHHHHhhhccccccccccccccCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ch
Q 047115 387 LGDHGGFNIGYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLVAQTFLAMLCHFK-AG 465 (522)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g-~~ 465 (522)
............++...+.+...+. ...+..|.+|++.|+++.|+.+....+++.++|.+.+.+.+..+ +.
T Consensus 338 -------~~~~~~~~~~~~~~~g~~~~~~~g~-~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~ 409 (490)
T PRK10642 338 -------NSNVIGLIFAGLLMLAVILNCFTGV-MASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLM 409 (490)
T ss_pred -------hCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCch
Confidence 0111112222222222222222222 23455789999999999998777777888899999999887654 33
Q ss_pred -hhHHHHHHHHHHHHHHHhhccCCCCCC
Q 047115 466 -VFFCFGGWVAFMTTFVHFFLPETKYMP 492 (522)
Q Consensus 466 -~~~~~~~~~~i~~~~~~~~~~~~~~~~ 492 (522)
.+++. .+..+.+++..+++||++++.
T Consensus 410 ~~~~~~-~~~~~i~~~~~~~~pes~~~~ 436 (490)
T PRK10642 410 MPAYYL-MVVAVIGLITGVTMKETANRP 436 (490)
T ss_pred HHHHHH-HHHHHHHHHHHHHhccccCCC
Confidence 33333 333344444555678876543
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-32 Score=293.59 Aligned_cols=375 Identities=16% Similarity=0.222 Sum_probs=271.3
Q ss_pred CCCCCCCCCCc---hhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccCcccchhhhhhhhhhhhhhhhcccc
Q 047115 50 DPKISNYGKFD---SQLLAAFTSSLYIAGLIAFLFASKVTRAFGRKASILPKFQGRNADAIGLQKTEKELSYKRIETNLE 126 (522)
Q Consensus 50 ~p~i~~~~~~~---~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (522)
.|.+.+|++++ +.+.++..+++.++..++++++|+++||+|||++++
T Consensus 112 ~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~------------------------------ 161 (505)
T TIGR00898 112 SSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLL------------------------------ 161 (505)
T ss_pred cccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHH------------------------------
Confidence 35677899998 899999999999999999999999999999999999
Q ss_pred cccchhhhhHHHHHHHhhhhhhHHHHHHHHHHHhhhhhhhccccccccccccccccccccCCcc-hhHHHHHHHHHHHHH
Q 047115 127 QCSCCSCCYSNHCSIGGAAFNIYMLILGCVLLGVGIGFTSQSIQRFNQFAYMILLSSNFETTRL-SHIDFLLQISICYLI 205 (522)
Q Consensus 127 ~~~~~~~l~~~~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~-g~~~~~~~~~~~lG~ 205 (522)
.+.++.+++.+++++++|++.+++.|++.|++.+...+....+ +.| +.|+++ +++.++.+.+..+|.
T Consensus 162 ---~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~--------~~e-~~~~~~r~~~~~~~~~~~~~g~ 229 (505)
T TIGR00898 162 ---LSTLVTAVSGVLTAFSPNYTVFLVFRLLVGMGIGGIWVQAVVL--------NTE-FLPKKQRAIVGTLIQVFFSLGL 229 (505)
T ss_pred ---HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhhccchHHHHHHH--------hhe-ecChhhhHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999 999 888888 999999999999999
Q ss_pred HHHHHHHhhhhccCCCCchHHHHHhhHHHHHHHHHHhcccCCChHHHHHhCCCHHHHHHHHHHHcCCcc---hHHHH---
Q 047115 206 LSANLLNYGTQKIKGSWGWRISLAMAAVPASILTIGSLFLPETPNSIIQRNKDHQKAEEILQIVRNTTD---VKAEL--- 279 (522)
Q Consensus 206 ~~~~~~~~~l~~~~~~~gwr~~f~i~~~~~~~~~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~--- 279 (522)
++++.+++.+. +||+.+++.+++.++..+..+++||+|+|+..+++ .+++++.+++..+.+. .++..
T Consensus 230 ~~~~~~~~~~~------~wr~~~~~~~i~~~~~~~~~~~~~esp~~l~~~~~-~~~a~~~l~~~~~~~~~~~~~~~~~~~ 302 (505)
T TIGR00898 230 VLLPLVAYFIP------DWRWLQLAVSLPTFLFFLLSWFVPESPRWLISQGR-IEEALKILQRIAKINGKKLPAEVLSLS 302 (505)
T ss_pred HHHHHHHHHhh------HHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHCCC-HHHHHHHHHHHHHHcCCCCCHHHHhhh
Confidence 99999987765 59999999888877777777889999999998888 8887776665433221 10000
Q ss_pred -HHH-H-----HHHHhhccccchhHHHHHHHHH-HhhhccchhhHhcHHHHHHHcCCCCchhhHHHhHHHHHHHHHHHHh
Q 047115 280 -DDI-I-----RASSKIIHRIYRPQLVMAILIP-FQQVTRVNVISFNAPVLFMTIKVRKSTSLLMSAVVPDGIGTVSTIL 351 (522)
Q Consensus 280 -~~~-~-----~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 351 (522)
++. . ....++++++..+...+..... +.....++.. +......+.+. . ......++..+++.++
T Consensus 303 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~---~-~~~~~~~~~~i~~~~~ 374 (505)
T TIGR00898 303 LEKDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWFTTAFSYYGL----VLDLGNLGGNI---Y-LDLFISGLVELPAKLI 374 (505)
T ss_pred hhhhhhhccCCCcHHHHhCChHHHHHHHHHHHHHHHHHHHHHHH----hccccccCCCh---H-HHHHHHHHHHHHHHHH
Confidence 000 0 0122444433333333332222 2222211212 22223333332 2 3445667888899999
Q ss_pred HHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcchhhHHHHHHHHHHHHhhhccccccccccccccCchh
Q 047115 352 PMILADKLGRTVLFLLGGIQILVSQVMIRSIMAAQLGDHGGFNIGYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFPLE 431 (522)
Q Consensus 352 ~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~ 431 (522)
.+++.||+|||+.+.++.++.+++.+++.... ....+......++..++.... .+..+.+.+|.+|++
T Consensus 375 ~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~e~~p~~ 442 (505)
T TIGR00898 375 TLLLIDRLGRRYTMAASLLLAGVALLLLLFVP-----------VDLYFLRTALAVLGKFGITSA-FQMVYLYTAELYPTV 442 (505)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcC-----------CCchHHHHHHHHHHHHHHHHH-HHHHHHHhcccccHH
Confidence 99999999999999888877777766554431 111122233333333333322 234557778999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHhhccCCCCCCHHH
Q 047115 432 IRSAGQSITVAVDLLFTFLVAQTFLAMLCHFKAGVFFCFGGWVAFMTTFVHFFLPETKYMPIEF 495 (522)
Q Consensus 432 ~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 495 (522)
.|+++.|+.++...++++++|.+.+ +.+.....++.+++++..+.+++ .+++||+++++++|
T Consensus 443 ~r~~~~g~~~~~~~ig~~i~p~i~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~lpet~~~~l~~ 504 (505)
T TIGR00898 443 VRNLGVGVCSTMARVGSIISPFLVY-LGEKWLFLPLVLFGGLALLAGIL-TLFLPETKGVPLPE 504 (505)
T ss_pred HHhhhHhHHHHHHHHHHHHHhHHHH-HHHHHHhhHHHHHHHHHHHHHHH-HHcCcCCCCCCCCC
Confidence 9999999999999999999999988 44433355666666555555444 45789998877643
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-31 Score=280.24 Aligned_cols=372 Identities=14% Similarity=0.111 Sum_probs=268.5
Q ss_pred HHHHHHHHHHHHHHhhhhhcchhhccccccHHHHHHhhhhhhhcccCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHH
Q 047115 3 IFIVLSCIVAATSGLIFGYDIGVSGGVTLMEPFLKKCFLEVYKKMKEDPKISNYGKFDSQLLAAFTSSLYIAGLIAFLFA 82 (522)
Q Consensus 3 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~~~~~s~~~~~~~i~~~~~ 82 (522)
++++.....+.++.+.+++|.....+.. |.+.+++ |+++.+.+++.+++.+++.+++++.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~------------------~~s~~~~~~~~~~~~~~~~l~~~~~ 73 (426)
T PRK12307 14 RPQKNALFSAWLGYVFDGFDFMLIFYIM--YLIKADL------------------GLTDMEGAFLATAAFIGRPFGGALF 73 (426)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHH--HHHHHHh------------------CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677788888899999998887654 5666555 7899999999999999999999999
Q ss_pred HHhhhhhccccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhhhhHHHHHHHhhhhhhHHHHHHHHHHHhhh
Q 047115 83 SKVTRAFGRKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCCYSNHCSIGGAAFNIYMLILGCVLLGVGI 162 (522)
Q Consensus 83 g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~l~~~r~l~G~~~ 162 (522)
|+++||+|||+++. .+.++.++++++++++++++.++++|+++|++.
T Consensus 74 g~l~dr~g~r~~l~---------------------------------~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~ 120 (426)
T PRK12307 74 GLLADKFGRKPLMM---------------------------------WSIVAYSVGTGLSGLASGVIMLTLSRFIVGMGM 120 (426)
T ss_pred HHHHHHhCChHHHH---------------------------------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 99999999999999 999999999999999999999999999999999
Q ss_pred hhhhccccccccccccccccccccCCcc-hhHHHHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHhhHHHHHHHHHH
Q 047115 163 GFTSQSIQRFNQFAYMILLSSNFETTRL-SHIDFLLQISICYLILSANLLNYGTQKIKGSWGWRISLAMAAVPASILTIG 241 (522)
Q Consensus 163 g~~~~~~~~~~~~~~~~~i~~~~~~~~~-g~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~gwr~~f~i~~~~~~~~~~~ 241 (522)
|..++....+ +.| ++|+++ +++.++...+..+|.++++.+...+.+. .+||+.|++..+..++....
T Consensus 121 g~~~~~~~~~--------~~~-~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~---~~w~~~f~i~~~~~~~~~~~ 188 (426)
T PRK12307 121 AGEYACASTY--------AVE-SWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEA---YGWRAAFFVGLLPVLLVIYI 188 (426)
T ss_pred hhHHHHHHHH--------HHH-hCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHccc---CCHHHHHHHHHHHHHHHHHH
Confidence 9999999898 999 888888 9999999999999999999887776643 48999998866555444444
Q ss_pred hcccCCChHHHHHhCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHHhhccccchhHHHHHHHHHHhhhccchhhHhcHHH
Q 047115 242 SLFLPETPNSIIQRNKDHQKAEEILQIVRNTTDVKAELDDIIRASSKIIHRIYRPQLVMAILIPFQQVTRVNVISFNAPV 321 (522)
Q Consensus 242 ~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (522)
....||++++..++.+ .+ . +..++ ..++.....+++++++..+.........+........+..+.|.
T Consensus 189 ~~~~p~~~~~~~~~~~-~~-~-------~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (426)
T PRK12307 189 RARAPESKEWEEAKLS-GK-G-------KHSQS---AWSVFSLSMKGLFNRAQFPLTLCVFIVLFSIFGANWPIFGLLPT 256 (426)
T ss_pred HHHCCCChHHHHhhhh-cc-c-------ccccc---chhhhhHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4446777654221111 00 0 00000 00111112224454443333333222223333333345567888
Q ss_pred HHHHcCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcchhhHHH
Q 047115 322 LFMTIKVRKSTSLLMSAVVPDGIGTVSTILPMILADKLGRTVLFLLGGIQILVSQVMIRSIMAAQLGDHGGFNIGYAYLI 401 (522)
Q Consensus 322 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (522)
++++.|++....+ .......++.++++++.+++.||++||+....+.....+..+.+.... .. ...
T Consensus 257 ~~~~~g~~~~~~~-~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~-~~~- 322 (426)
T PRK12307 257 YLAGEGFDTGVVS-NLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIP-----------QD-NYL- 322 (426)
T ss_pred HHHHcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHc-----------cc-cHH-
Confidence 8888899888888 778888999999999999999999999988877666554443332211 11 111
Q ss_pred HHHHHHHHHhh-hccccccccccccccCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Q 047115 402 LFLICVYKAGF-AFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLVAQTFLAMLCHFKAG 465 (522)
Q Consensus 402 ~~~~~~~~~~~-~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~ 465 (522)
.+..+.++.++ ..+..+....++.|.+|++.|+++.|+.+.+..+++.++|.+.+.+.++.+..
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g~~ 387 (426)
T PRK12307 323 LLGACLFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGITMGLG 387 (426)
T ss_pred HHHHHHHHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHcccHH
Confidence 11122222221 12223334456689999999999999999999999999999999999988744
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-31 Score=278.93 Aligned_cols=381 Identities=15% Similarity=0.122 Sum_probs=276.8
Q ss_pred hHHHHHHHHHHHHHHhhhhhcchhhccccccHHHHHHhhhhhhhcccCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHH
Q 047115 2 TIFIVLSCIVAATSGLIFGYDIGVSGGVTLMEPFLKKCFLEVYKKMKEDPKISNYGKFDSQLLAAFTSSLYIAGLIAFLF 81 (522)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~~~~~s~~~~~~~i~~~~ 81 (522)
+++.|....++.+..+.+++|....+... |.+.+++ |+++++.+++.+.+.++..+++++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~------------------~~s~~~~g~~~~~~~~~~~~~~~~ 69 (406)
T PRK11551 10 SSRLALTIGLCFLVALLEGLDLQSAGVAA--PRMAQEF------------------GLDVAQMGWAFSAGILGLLPGALL 69 (406)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHh------------------CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 35778889999999999999999988765 6777666 679999999999999999999999
Q ss_pred HHHhhhhhccccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhhhhHHHHHHHhhhhhhHHHHHHHHHHHhh
Q 047115 82 ASKVTRAFGRKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCCYSNHCSIGGAAFNIYMLILGCVLLGVG 161 (522)
Q Consensus 82 ~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~l~~~r~l~G~~ 161 (522)
.|+++||+|||+++. .+.++.+++.+++.++++++.+++.|++.|++
T Consensus 70 ~g~l~dr~g~r~~~~---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~ 116 (406)
T PRK11551 70 GGRLADRIGRKRILI---------------------------------VSVALFGLFSLATAQAWDFPSLLVARLLTGVG 116 (406)
T ss_pred HHHHHHHhCCchhHH---------------------------------HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhh
Confidence 999999999999999 99989999999999999999999999999999
Q ss_pred hhhhhccccccccccccccccccccCCcc-hhHHHHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHhhHHHHHHH-H
Q 047115 162 IGFTSQSIQRFNQFAYMILLSSNFETTRL-SHIDFLLQISICYLILSANLLNYGTQKIKGSWGWRISLAMAAVPASIL-T 239 (522)
Q Consensus 162 ~g~~~~~~~~~~~~~~~~~i~~~~~~~~~-g~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~gwr~~f~i~~~~~~~~-~ 239 (522)
.+...+....+ +.| ++|+++ ++++++.+.+..+|..+++.++..+.+. .+||+.|++.++..++. .
T Consensus 117 ~~~~~~~~~~~--------~~~-~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 184 (406)
T PRK11551 117 LGGALPNLIAL--------TSE-AVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGD---AAWRHIFYVGGVGPLLLVP 184 (406)
T ss_pred HHHHHHHHHHH--------HHH-HcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---cCHHHHHHHHHHHHHHHHH
Confidence 99999998888 999 888877 9999999999999999999998766543 47999998876654443 3
Q ss_pred HHhcccCCChHHHHHhCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHHhhccccchhHHHHHHHHHHhhhccchhhHhcH
Q 047115 240 IGSLFLPETPNSIIQRNKDHQKAEEILQIVRNTTDVKAELDDIIRASSKIIHRIYRPQLVMAILIPFQQVTRVNVISFNA 319 (522)
Q Consensus 240 ~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (522)
....++||+|++..++++ .++.++..+ ..+++...++........+......+....+.
T Consensus 185 ~~~~~l~~~~~~~~~~~~-~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (406)
T PRK11551 185 LLMRWLPESRAFAQAAGA-GKQRAPVLR--------------------ALFGEGRATATLLLWISYFFTLIVLYFLLNWL 243 (406)
T ss_pred HHHHhCCCChhHHhccCc-chhhhhhHH--------------------HHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445568998764322211 111100000 11111111111111111222223334556778
Q ss_pred HHHHHHcCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcchhhH
Q 047115 320 PVLFMTIKVRKSTSLLMSAVVPDGIGTVSTILPMILADKLGRTVLFLLGGIQILVSQVMIRSIMAAQLGDHGGFNIGYAY 399 (522)
Q Consensus 320 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (522)
|.++++.|++..+.+ .......++.++++++.|++.||++||+.+..+.....++...+... ...+
T Consensus 244 p~~~~~~g~s~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~-------------~~~~ 309 (406)
T PRK11551 244 PSLLVGQGLSRSQAG-LVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAA-------------PSFA 309 (406)
T ss_pred HHHHHhCCCChhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhc-------------CcHH
Confidence 998988999998888 88888899999999999999999999998877655554444333221 1122
Q ss_pred HHHHHHHHHHHhhhccccccccccccccCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-chhhHHHHHHHHHHH
Q 047115 400 LILFLICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLVAQTFLAMLCHFK-AGVFFCFGGWVAFMT 478 (522)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~i~~ 478 (522)
...+...+.+.+.. +..+....+..|.+|++.|+++.|+.+....++..++|.+.+.+.++.+ +...+.....+.+.+
T Consensus 310 ~~~~~~~~~g~~~~-~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~ 388 (406)
T PRK11551 310 GMLLAGFAAGLFVV-GGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVA 388 (406)
T ss_pred HHHHHHHHHHHHHH-hHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHH
Confidence 22222222222222 2334455677899999999999999999999999999999999998765 333333333333333
Q ss_pred HHHHh
Q 047115 479 TFVHF 483 (522)
Q Consensus 479 ~~~~~ 483 (522)
.+..+
T Consensus 389 ~~~~~ 393 (406)
T PRK11551 389 ALAAL 393 (406)
T ss_pred HHHHH
Confidence 33333
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-31 Score=277.13 Aligned_cols=384 Identities=14% Similarity=0.073 Sum_probs=274.3
Q ss_pred ChHHHHHHHHHHHHHHhhhhhcchhhccccccHHHHHHhhhhhhhcccCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHH
Q 047115 1 MTIFIVLSCIVAATSGLIFGYDIGVSGGVTLMEPFLKKCFLEVYKKMKEDPKISNYGKFDSQLLAAFTSSLYIAGLIAFL 80 (522)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~~~~~s~~~~~~~i~~~ 80 (522)
+++++|.....+.++.+.+++|....+.+. |++.+++ |+++.+.+++.+++.++..++++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~------------------~~s~~~~g~~~~~~~~~~~~~~~ 65 (405)
T TIGR00891 6 LTRAQWNAFSAAWLGWLLDAFDFFLVALVL--AEVAGEF------------------GLTTVDAASLISAALISRWFGAL 65 (405)
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHh------------------CCChhhHHHHHHHHHHHHHHHHH
Confidence 467889999999999999999999998776 6766666 77999999999999999999999
Q ss_pred HHHHhhhhhccccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhhhhHHHHHHHhhhhhhHHHHHHHHHHHh
Q 047115 81 FASKVTRAFGRKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCCYSNHCSIGGAAFNIYMLILGCVLLGV 160 (522)
Q Consensus 81 ~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~l~~~r~l~G~ 160 (522)
+.|+++||+|||++++ .+.++.++++++++++++++.+++.|++.|+
T Consensus 66 ~~G~l~Dr~g~r~~~~---------------------------------~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~ 112 (405)
T TIGR00891 66 MFGLWGDRYGRRLPMV---------------------------------TSIVLFSAGTLACGFAPGYITMFIARLVIGI 112 (405)
T ss_pred HHHHHHHHhccHHHHH---------------------------------HHHHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 9999999999999999 9999999999999999999999999999999
Q ss_pred hhhhhhccccccccccccccccccccCCcc-hhHHHHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHhhHHHHHHHH
Q 047115 161 GIGFTSQSIQRFNQFAYMILLSSNFETTRL-SHIDFLLQISICYLILSANLLNYGTQKIKGSWGWRISLAMAAVPASILT 239 (522)
Q Consensus 161 ~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~-g~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~gwr~~f~i~~~~~~~~~ 239 (522)
+.+...+....+ +.| +.|+++ +++.++.+.+..+|..+++.++..+.+..+ .+||+.|.+.+++.++.+
T Consensus 113 ~~~~~~~~~~~~--------i~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~-~~w~~~f~~~~~~~~~~~ 182 (405)
T TIGR00891 113 GMGGEYGSSAAY--------VIE-SWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWG-DGWRALFFISILPIIFAL 182 (405)
T ss_pred hhhhhhHHHHHH--------HHH-hCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-ccHHHHHHHHHHHHHHHH
Confidence 999999999998 999 888888 999999999999999999999887775432 259999998877776666
Q ss_pred HHhcccCCChHHHHHhCCCHHHHHHHHHHHcCCc-chHHHHHHHHHHHHhhccccchhHHHHHHHHHHhhhccchhhHhc
Q 047115 240 IGSLFLPETPNSIIQRNKDHQKAEEILQIVRNTT-DVKAELDDIIRASSKIIHRIYRPQLVMAILIPFQQVTRVNVISFN 318 (522)
Q Consensus 240 ~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (522)
+....+||++++..++++ .++.++..++..+.+ ..+...++......+.. ++.++.....................+
T Consensus 183 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (405)
T TIGR00891 183 WLRKNIPEAEDWKEKHAG-KALVRTMVDILYGGEHRIANIVMTLAAAMVQSA-GKRWPTFVYLVVLVLFANLYSHPIQDL 260 (405)
T ss_pred HHHHhCCCChhHHHHhhh-hhhhhhHHHHHhccchhhhhhhhhhhHHhhhhh-hhhhHHHHHHHHHHHHHHHHHhhhhhh
Confidence 666778998765432222 222222222221111 11111111111110100 111111111112222112222234456
Q ss_pred HHHHH-HHcCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcchh
Q 047115 319 APVLF-MTIKVRKSTSLLMSAVVPDGIGTVSTILPMILADKLGRTVLFLLGGIQILVSQVMIRSIMAAQLGDHGGFNIGY 397 (522)
Q Consensus 319 ~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (522)
.|.++ ++.|++..+.+ .......++.+++.++.+++.||++||+.+..+.....+........ . ..
T Consensus 261 ~~~~~~~~~g~s~~~~~-~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~-----------~-~~ 327 (405)
T TIGR00891 261 LPTYLKADLGLSPHTVA-NIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAI-----------G-AN 327 (405)
T ss_pred hHHHHHHHhCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHh-----------C-Cc
Confidence 67766 45799998888 88888999999999999999999999998877665443222221111 1 11
Q ss_pred hHHHHHHHHHHHHhhhccccccccccccccCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 047115 398 AYLILFLICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLVAQTFLAMLCHFK 463 (522)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g 463 (522)
.+...+..++...... +..+....+.+|.+|++.|+++.|+.+.+..++..++|.+.+.+.++.|
T Consensus 328 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g 392 (405)
T TIGR00891 328 VAVLGLGLFFQQMLVQ-GIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLD 392 (405)
T ss_pred hHHHHHHHHHHHHHHc-cchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 2222222222222222 2333445666899999999999999999999999999999999999888
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-31 Score=280.42 Aligned_cols=387 Identities=18% Similarity=0.177 Sum_probs=255.0
Q ss_pred hHHHHHHHHHHHHHHhhhhhcchhhccccccHHHHHHhhhhhhhcccCCCCCCCCCCCchhH---HHHHHHHHHHHHHHH
Q 047115 2 TIFIVLSCIVAATSGLIFGYDIGVSGGVTLMEPFLKKCFLEVYKKMKEDPKISNYGKFDSQL---LAAFTSSLYIAGLIA 78 (522)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~---~~~~~s~~~~~~~i~ 78 (522)
+.+++...+.+.++.++++||...++... |.+.+++++. +.+..+ .+...+..+++..++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~--~~l~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~ig 79 (432)
T PRK10406 17 TRRRIWAIVGASSGNLVEWFDFYVYSFCS--LYFAHIFFPS---------------GNTTTQLLQTAGVFAAGFLMRPIG 79 (432)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhCCC---------------CCchHHHHHHHHHHHHHHHHHHHH
Confidence 45666677778889999999999988665 6777776421 123333 344455566666799
Q ss_pred HHHHHHhhhhhccccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhhhhHHHHHHHhhhhhhH--------H
Q 047115 79 FLFASKVTRAFGRKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCCYSNHCSIGGAAFNIY--------M 150 (522)
Q Consensus 79 ~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~--------~ 150 (522)
++++|+++||+|||+++. .+.++++++++++++++++. .
T Consensus 80 ~~~~G~l~Dr~Grr~~l~---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (432)
T PRK10406 80 GWLFGRIADKHGRKKSML---------------------------------ISVCMMCFGSLVIACLPGYETIGTWAPAL 126 (432)
T ss_pred HHHHHHHHHhcCcHHHHH---------------------------------HHHHHHHHHHHHHhhcCCchhHHHHHHHH
Confidence 999999999999999999 99999999999999988764 5
Q ss_pred HHHHHHHHHhhhhhhhccccccccccccccccccccCCcc-hhHHHHHHHHHHHHHHHHHHHHhhhhccC-----CCCch
Q 047115 151 LILGCVLLGVGIGFTSQSIQRFNQFAYMILLSSNFETTRL-SHIDFLLQISICYLILSANLLNYGTQKIK-----GSWGW 224 (522)
Q Consensus 151 l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~-g~~~~~~~~~~~lG~~~~~~~~~~l~~~~-----~~~gw 224 (522)
+++.|+++|++.|..++...++ ++| +.|+++ ++..++.+.+...|.++++.+...+.... ..+||
T Consensus 127 l~~~R~l~G~g~g~~~~~~~~~--------i~e-~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gW 197 (432)
T PRK10406 127 LLLARLFQGLSVGGEYGTSATY--------MSE-VAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGW 197 (432)
T ss_pred HHHHHHHHHhhhhhhHhhHHHH--------HHH-hCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccch
Confidence 8899999999999999999999 999 888887 99999999998899888887765554321 24699
Q ss_pred HHHHHhhHHHHHHHHHHhcccCCChHHHHHhCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHHhhccccchhHHHHHHHH
Q 047115 225 RISLAMAAVPASILTIGSLFLPETPNSIIQRNKDHQKAEEILQIVRNTTDVKAELDDIIRASSKIIHRIYRPQLVMAILI 304 (522)
Q Consensus 225 r~~f~i~~~~~~~~~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 304 (522)
|++|++++++.++.......+||+|++..++ .++ +.+.+ +++++ ++........
T Consensus 198 r~~F~i~~~~~ll~~~~~~~~~e~~~~~~~~---~~~--------------~~~~~-------~l~~~--~~~~~~~~~~ 251 (432)
T PRK10406 198 RIPFALGAVLAVVALWLRRQLDETSQQETRA---LKE--------------AGSLK-------GLWRN--RRAFIMVLGF 251 (432)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCchHHHhh---hcc--------------cccHH-------HHHhh--HHHHHHHHHH
Confidence 9999998888777666666788887531100 000 00011 23321 1222222222
Q ss_pred HHhhhccchhhHhcHHHHHH-HcCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHH
Q 047115 305 PFQQVTRVNVISFNAPVLFM-TIKVRKSTSLLMSAVVPDGIGTVSTILPMILADKLGRTVLFLLGGIQILVSQVMIRSIM 383 (522)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~ 383 (522)
.+.....++.+..|.|.+++ ..|++..+.+ .......+...++..+.|+++||++||+.+........+....+....
T Consensus 252 ~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~-~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~ 330 (432)
T PRK10406 252 TAAGSLCFYTFTTYMQKYLVNTAGMHANVAS-GIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSAL 330 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHH
Confidence 22223334556778898885 4688887877 677777777888889999999999999887665554333322121111
Q ss_pred HHhhCCCCCCcchhhHHHHHHHHHHHHhhhccccccccccccccCchhhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHhc
Q 047115 384 AAQLGDHGGFNIGYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLL-FTFLVAQTFLAMLCHF 462 (522)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~ 462 (522)
. .....+..+.+.++.....+. ..+..+.+.+|.+|++.|+++.|+.+..+++ .+...|.+.+ +.+..
T Consensus 331 ~---------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~-~l~~~ 399 (432)
T PRK10406 331 Q---------NVSSPYAAFGLVMCALLIVSF-YTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVAL-SLKSI 399 (432)
T ss_pred H---------cCCcHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHH-HHHHh
Confidence 0 001112111111111111111 1223456678999999999999999988775 3445666666 44555
Q ss_pred c-chhhHHHHHHHHHHHHHHHhhc
Q 047115 463 K-AGVFFCFGGWVAFMTTFVHFFL 485 (522)
Q Consensus 463 g-~~~~~~~~~~~~i~~~~~~~~~ 485 (522)
+ +...+.+.+...+.+.+..+++
T Consensus 400 g~~~~~~~~~~~~~~i~~~~~~~l 423 (432)
T PRK10406 400 GMETAFFWYVTLMAVVAFLVSLML 423 (432)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHh
Confidence 5 4434444444444444444443
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-32 Score=280.91 Aligned_cols=380 Identities=13% Similarity=0.098 Sum_probs=263.2
Q ss_pred HHHHHHHHHHHHhhhhhcchhhccccccHHHHHHhhhhhhhcccCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 047115 5 IVLSCIVAATSGLIFGYDIGVSGGVTLMEPFLKKCFLEVYKKMKEDPKISNYGKFDSQLLAAFTSSLYIAGLIAFLFASK 84 (522)
Q Consensus 5 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~ 84 (522)
.|.....+.++.+++++|....+... |.+.+++ |++.++.+++.+++.+++.+++++.|+
T Consensus 6 ~~~~~~~~~~~~~~~~~d~~~~~~~~--~~l~~~~------------------~~s~~~~g~~~s~~~~~~~~~~~~~g~ 65 (412)
T TIGR02332 6 FRRLIIFLFILFIFSFLDRINIGFAG--LTMGKDL------------------GLSATMFGLAATLFYAAYVICGIPSNI 65 (412)
T ss_pred hhHHHHHHHHHHHHHHhhhhhHHHHH--HhhHhhc------------------CCCHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 56677777888889999999998765 4444444 889999999999999999999999999
Q ss_pred hhhhhccccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhhhhHHHHHHHhhhhhhHHHHHHHHHHHhhhhh
Q 047115 85 VTRAFGRKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCCYSNHCSIGGAAFNIYMLILGCVLLGVGIGF 164 (522)
Q Consensus 85 l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~l~~~r~l~G~~~g~ 164 (522)
++||+|||+++. .+.++++++++++++++|++.+++.|+++|++.|.
T Consensus 66 l~dr~G~r~~~~---------------------------------~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~ 112 (412)
T TIGR02332 66 MLAIIGARRWIA---------------------------------GIMVLWGIASTATMFATGPESLYLLRILVGIAEAG 112 (412)
T ss_pred HHHHhChHHHHH---------------------------------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhh
Confidence 999999999999 99999999999999999999999999999999999
Q ss_pred hhccccccccccccccccccccCCcc-hhHHHHHHHHHHHHHHHHHHHHhhhhcc---CCCCchHHHHHhhHHHHHH-HH
Q 047115 165 TSQSIQRFNQFAYMILLSSNFETTRL-SHIDFLLQISICYLILSANLLNYGTQKI---KGSWGWRISLAMAAVPASI-LT 239 (522)
Q Consensus 165 ~~~~~~~~~~~~~~~~i~~~~~~~~~-g~~~~~~~~~~~lG~~~~~~~~~~l~~~---~~~~gwr~~f~i~~~~~~~-~~ 239 (522)
..+....+ +.| ++|+++ ++++++++.+..+|..+++.+++.+.+. .+..|||+.|.+.+++.++ ..
T Consensus 113 ~~~~~~~~--------~~~-~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~ 183 (412)
T TIGR02332 113 FLPGILLY--------LTF-WFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGV 183 (412)
T ss_pred HHHHHHHH--------HHH-HcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHH
Confidence 99888888 999 888887 9999999999999999999998877532 1346899999997776655 44
Q ss_pred HHhcccCCChHHHHHhCCCHHHHHHHHHHHcCCc-c---hHHHHHHHHHHHHhhccccchhHHHHHHHHHHhhhccchhh
Q 047115 240 IGSLFLPETPNSIIQRNKDHQKAEEILQIVRNTT-D---VKAELDDIIRASSKIIHRIYRPQLVMAILIPFQQVTRVNVI 315 (522)
Q Consensus 240 ~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (522)
+..+++||+|+.. +.-..++.+...+..+.++ + .+.+.++.....++.+++...+..+......++.....+.+
T Consensus 184 ~~~~~~~~~p~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (412)
T TIGR02332 184 MTWFWLDDSPDKA--KWLDEEDKKALKEMIDNDQLTLEQPEGAFAHAAMPQRSMLREIFTPAIMLYTLAYFCLTNTLSAI 261 (412)
T ss_pred HHhhccCCCcccC--CCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHhcChHHHHHHHHHHHHHHHHHHH
Confidence 4556789988421 1000111111111111010 0 00000000000001111111223333333335555556677
Q ss_pred HhcHHHHHHHc--CCCCchhhHHHhHHHHHHHHHHHHhHHHHhhhccchHHH-HHHHHHHHHHHHHHHHHHHHhhCCCCC
Q 047115 316 SFNAPVLFMTI--KVRKSTSLLMSAVVPDGIGTVSTILPMILADKLGRTVLF-LLGGIQILVSQVMIRSIMAAQLGDHGG 392 (522)
Q Consensus 316 ~~~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (522)
..|.|.++++. |++..+.+ .......++.+++.++.++++||+++|+.. ........++. ++...
T Consensus 262 ~~~~p~~l~~~~~~~s~~~~~-~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~~-~~~~~---------- 329 (412)
T TIGR02332 262 NIWTPQILQSFNQGSSNIMIG-LLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAGW-LLASA---------- 329 (412)
T ss_pred HHHHHHHHHhcCCCCcHHHhH-HHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHHH-HHHHh----------
Confidence 88999999874 56777777 788899999999999999999999977643 33332322222 11111
Q ss_pred CcchhhHHHHHHHHHHHHhhhccccccccccccccCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 047115 393 FNIGYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLVAQTFLAMLCHFK 463 (522)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g 463 (522)
... ........+....+... ..+..+....|.+|++.|+++.|+.+..++++++++|.+.+.+.++.+
T Consensus 330 -~~~-~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g 397 (412)
T TIGR02332 330 -TDH-NLIQLLGIIMASMGSFS-AMAIFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGILKDATG 397 (412)
T ss_pred -cCC-HHHHHHHHHHHHHHhhh-hhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhcccccccCC
Confidence 011 11111112222222211 123334555688999999999999999999999999999999999876
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-31 Score=276.30 Aligned_cols=392 Identities=11% Similarity=0.123 Sum_probs=260.4
Q ss_pred HHHHHHHHHHHHhhhhhcchhhccccccHHHH-HHhhhhhhhcccCCCCCCCCCCCchhHHHHHH-----HHHHHHHHHH
Q 047115 5 IVLSCIVAATSGLIFGYDIGVSGGVTLMEPFL-KKCFLEVYKKMKEDPKISNYGKFDSQLLAAFT-----SSLYIAGLIA 78 (522)
Q Consensus 5 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~p~i~~~~~~~~~~~~~~~-----s~~~~~~~i~ 78 (522)
++.....+.++.++++||...++.+. |... +++++ ++++. .+++. ++.+++..++
T Consensus 20 ~~~~~~~~~~~~~~~~~d~~~~~~~~--~~~~~~~~~~----------------~~~~~-~~~~~~~~~~~~~~~~~~~g 80 (438)
T PRK09952 20 ARRAALGSFAGAVVDWYDFLLYGITA--ALVFNREFFP----------------QVSPA-MGTLAAFATFGVGFLFRPLG 80 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhcCC----------------CCCcH-HHHHHHHHHHHHHHHHHhhH
Confidence 45567777889999999999988664 4333 34432 12333 23332 4566778899
Q ss_pred HHHHHHhhhhhccccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhhhhHHHHHHHhhhhhhH--------H
Q 047115 79 FLFASKVTRAFGRKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCCYSNHCSIGGAAFNIY--------M 150 (522)
Q Consensus 79 ~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~--------~ 150 (522)
+++.|+++||+|||++++ .+.++++++++++++++++. .
T Consensus 81 ~~~~G~l~Dr~Grr~~l~---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (438)
T PRK09952 81 GVVFGHFGDRLGRKRMLM---------------------------------LTVWMMGIATALIGLLPSFSTIGWWAPVL 127 (438)
T ss_pred HHHHHHHHHhhccHHHHH---------------------------------HHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 999999999999999999 99999999999999999987 5
Q ss_pred HHHHHHHHHhhhhhhhccccccccccccccccccccCCcc-hhHHHHHHHHHHHHHHHHHHHHhhhhccC-----CCCch
Q 047115 151 LILGCVLLGVGIGFTSQSIQRFNQFAYMILLSSNFETTRL-SHIDFLLQISICYLILSANLLNYGTQKIK-----GSWGW 224 (522)
Q Consensus 151 l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~-g~~~~~~~~~~~lG~~~~~~~~~~l~~~~-----~~~gw 224 (522)
++++|+++|++.|..++....+ +.| +.|+++ ++..+..+.+..+|.+++..+...+.... .++||
T Consensus 128 l~~~R~l~G~~~g~~~~~~~~~--------~~e-~~p~~~rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gW 198 (438)
T PRK09952 128 LVTLRAIQGFAVGGEWGGAALL--------AVE-SAPKNKKAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGW 198 (438)
T ss_pred HHHHHHHHHhhhcccHHHHHHH--------HHH-hCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccCh
Confidence 8889999999999999999999 999 888888 99999999999999999887766554321 24699
Q ss_pred HHHHHhhHHHHHHHHHHhcccCCChHHHHHhCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHHhhccccchhHHHHHHHH
Q 047115 225 RISLAMAAVPASILTIGSLFLPETPNSIIQRNKDHQKAEEILQIVRNTTDVKAELDDIIRASSKIIHRIYRPQLVMAILI 304 (522)
Q Consensus 225 r~~f~i~~~~~~~~~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 304 (522)
|+.|++.+++.++........||+|++..++++ .++.++ +. ...+ .++++ ++........
T Consensus 199 r~~f~~~~~~~l~~~~l~~~~~es~~~~~~~~~-~~~~~~---------~~-~~~~-------~l~~~--~~~~~~~~~~ 258 (438)
T PRK09952 199 RIPFLFSIVLVLIALWVRNGMEESAEFEQQQHE-QAAAKK---------RI-PVIE-------ALLRH--PGAFLKIIAL 258 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCChhHHHHHhh-cccccc---------cC-CHHH-------HHHHc--hHHHHHHHHH
Confidence 999999888776665556678999876433222 111100 00 0000 11221 1122222222
Q ss_pred HHhhhccchhhHhcHHHHHH-HcCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHH
Q 047115 305 PFQQVTRVNVISFNAPVLFM-TIKVRKSTSLLMSAVVPDGIGTVSTILPMILADKLGRTVLFLLGGIQILVSQVMIRSIM 383 (522)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~ 383 (522)
.+......+....|.|.+++ ..|++..... ......++..+++.++.|+++||++||+.+..+.+...++...+....
T Consensus 259 ~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~-~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~ 337 (438)
T PRK09952 259 RLCELLTMYIVTAFALNYSTQNLGLPRELFL-NIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMAL 337 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHH
Confidence 23333344556667787774 5677776554 455566777888999999999999999988776655444332222211
Q ss_pred HHhhCCCCCCcchhhHHHHHHHHHHHHhhhccccccccccccccCchhhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHhc
Q 047115 384 AAQLGDHGGFNIGYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDL-LFTFLVAQTFLAMLCHF 462 (522)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~ 462 (522)
. ..+..+..++..++...+.+.. .+..+.+.+|.+|++.|+++.++.+..+. +++.++|.+.+.+.+..
T Consensus 338 ~---------~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~ 407 (438)
T PRK09952 338 E---------AQSIFWIVFFSIMLANIAHDMV-VCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYF 407 (438)
T ss_pred H---------cCChHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 0 0111222222223322333322 23345677899999999999999776655 78899999999998854
Q ss_pred c--chhhHHHHHHHHHHHHHHHhhccCC
Q 047115 463 K--AGVFFCFGGWVAFMTTFVHFFLPET 488 (522)
Q Consensus 463 g--~~~~~~~~~~~~i~~~~~~~~~~~~ 488 (522)
+ +...+.+.+++.+.+.+..+.++|+
T Consensus 408 ~~~~~~~~~~~~~~~~i~~v~~~~~~~~ 435 (438)
T PRK09952 408 GGSWHSVAIYLLAGCLISAMTALLMKDN 435 (438)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHcccc
Confidence 2 4343444444455555555556654
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-33 Score=274.11 Aligned_cols=436 Identities=19% Similarity=0.182 Sum_probs=305.8
Q ss_pred ChHHHHHHHHHHHHHHhhhhhcchhhccccccHHHHHHhhhhhhhcccCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHH
Q 047115 1 MTIFIVLSCIVAATSGLIFGYDIGVSGGVTLMEPFLKKCFLEVYKKMKEDPKISNYGKFDSQLLAAFTSSLYIAGLIAFL 80 (522)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~~~~~s~~~~~~~i~~~ 80 (522)
++|+......++.++.+.++||...++.+. ++.+..+. ++. +..-+.++...+.+..+..+|..+||+
T Consensus 35 ~qw~~fk~i~iAG~GfftDsYDlF~I~lVt---~il~~lY~---~~~------~~~g~~ps~i~~~Vn~~A~vGti~GQl 102 (538)
T KOG0252|consen 35 LQWKHFKAIIIAGMGFFTDSYDLFSISLVT---KILGYLYY---HGD------ESGGHYPSGVLALVNAAALVGTIFGQL 102 (538)
T ss_pred hhHHHHHHHHHhhhhhcccchhhhhHHHHH---HHHHHHhc---CCC------CCCCcCCchHHHHHHHHHHHHHHHHHH
Confidence 378999999999999999999999999775 44444432 211 111356788889999999999999999
Q ss_pred HHHHhhhhhccccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhhhhHHHHHHHhhhh-------hhHHHHH
Q 047115 81 FASKVTRAFGRKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCCYSNHCSIGGAAF-------NIYMLIL 153 (522)
Q Consensus 81 ~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~-------~~~~l~~ 153 (522)
++|++.||+|||+++. ..+++..+++++++++. -.+++..
T Consensus 103 ~FG~lgD~~GRK~vYG---------------------------------~~liImIi~t~~~~~s~~~~~~~~~m~~L~~ 149 (538)
T KOG0252|consen 103 FFGWLGDKFGRKKVYG---------------------------------KELIIMIICSALSGLSVGTTSPLGVMMTLCF 149 (538)
T ss_pred HHHHHHhhhcchhhhh---------------------------------HHHHHHHHHHHHhccCCCCCCCcchhhHHHH
Confidence 9999999999999999 89999999998887752 2378889
Q ss_pred HHHHHHhhhhhhhccccccccccccccccccccCCcc-hhHHHHHHHHHHHHHHHHHHHHhhhhcc----CC--------
Q 047115 154 GCVLLGVGIGFTSQSIQRFNQFAYMILLSSNFETTRL-SHIDFLLQISICYLILSANLLNYGTQKI----KG-------- 220 (522)
Q Consensus 154 ~r~l~G~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~-g~~~~~~~~~~~lG~~~~~~~~~~l~~~----~~-------- 220 (522)
.|+++|+|.|+-+|...+. .+| ...+++ |...+.+.+...+|.+.|.+++..+... .+
T Consensus 150 ~R~~LGiGIGGDYPlSAtI--------~SE-~an~~~RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~~~l 220 (538)
T KOG0252|consen 150 FRFLLGIGIGGDYPLSATI--------MSE-SANKKTRGAFIAAVFAMQGFGILAGGIVALIVSAIFEKIFNGPSTYPHL 220 (538)
T ss_pred HHHHhhccccCCCcchHHH--------hhh-hhhhccccceeEEEEEecchhHhhccHHHHHHHHHHhccCCCCCCchHH
Confidence 9999999999999999999 999 998888 9988888888888888777776555421 11
Q ss_pred CCchHHHHHhhHHHHHHHHHHhcccCCChHHHHHhCCCHHHHHHHHHHHcCCc-----chHHHHHHHHH---HHHhhccc
Q 047115 221 SWGWRISLAMAAVPASILTIGSLFLPETPNSIIQRNKDHQKAEEILQIVRNTT-----DVKAELDDIIR---ASSKIIHR 292 (522)
Q Consensus 221 ~~gwr~~f~i~~~~~~~~~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~---~~~~l~~~ 292 (522)
..-||..+.+++++++..++..+.+|||+++.....+|.+++.+..++....+ +.+.+.++.++ .....+.+
T Consensus 221 d~vWRl~~glg~vpa~~~ly~Rl~M~Et~~Y~al~~~~~~~a~~d~~k~~~~~~~~~~~~~~~~~~~~~~~~~F~~~f~~ 300 (538)
T KOG0252|consen 221 DGVWRIIFGLGAVPALLVLYFRLKMPETARYTALVSKKLKQAAGDMKKVLSVDIEAESTAESDVPPPSNSFGLFSRLFLR 300 (538)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHhhcCHhhhhhccccccccccchhhccccCCCCcccccchHHHHHHH
Confidence 13599999999999999999999999999986444342333332211111110 00000000000 00122222
Q ss_pred cchhHHHHHHHHHHhhhccchhhHhcHHHHHHHcCCCCchhhHH-----H----hHHHHHHHHHHHHhHHHHhhhccchH
Q 047115 293 IYRPQLVMAILIPFQQVTRVNVISFNAPVLFMTIKVRKSTSLLM-----S----AVVPDGIGTVSTILPMILADKLGRTV 363 (522)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-----~----~~~~~~~~~~~~~~~g~l~dr~g~~~ 363 (522)
.+-+.++......|..-..++....+...+++.+|+.+.... . . ..+.....++|..+...++|++|||+
T Consensus 301 ~hg~~Llgt~~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~-~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~ 379 (538)
T KOG0252|consen 301 WHGKHLLGTAGTWFLLDIAFYGQNLFQSVIFSAIGVIPSANT-YHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKY 379 (538)
T ss_pred HHHHHHHHHHHHHHhhhhhhhccccHHHHHHHhhccCCCcch-HHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHH
Confidence 222333333333366666667777888888998888776655 3 1 11112222335555667899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcchhhHHHHHHHHHHHHhhhccccccccccccccCchhhhhHHHHHHHHH
Q 047115 364 LFLLGGIQILVSQVMIRSIMAAQLGDHGGFNIGYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAV 443 (522)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~ 443 (522)
..+.+++++.+..+.+...+. + .......+++..+..++..++.+.....+++|.+|++.|+++.|+..+.
T Consensus 380 iq~~GF~~~~i~~~~~~~~y~-----~----~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~ 450 (538)
T KOG0252|consen 380 IQLMGFFIMTIFFFVIAGPYN-----Q----LENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAAS 450 (538)
T ss_pred HHHhhHHHHHHHHHHHcCCcc-----c----ccccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHh
Confidence 999999988888777766431 0 1112223334444445555666777778999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH-----hccc-hhhHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHh
Q 047115 444 DLLFTFLVAQTFLAMLC-----HFKA-GVFFCFGGWVAFMTTFVHFFLPETKYMPIEFMDKVWR 501 (522)
Q Consensus 444 ~~~~~~~~~~~~~~~~~-----~~g~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 501 (522)
+-.|++++...+.+..+ ..+. ..++++++ +.+...+.-+++||+|++++||++.+.+
T Consensus 451 GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~-~~~~gi~~T~l~pEtk~~~leei~~e~~ 513 (538)
T KOG0252|consen 451 GKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAG-CMLLGILFTLLIPETKGKSLEEISNEEE 513 (538)
T ss_pred ccchHHHHHHHhhHhhhccCCccccchHHHHHHHH-HHHHhHheeEEeecccccCHHHhcChhh
Confidence 99999999999999998 4453 34555544 4444555566788999999999865443
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.1e-30 Score=272.68 Aligned_cols=386 Identities=14% Similarity=0.085 Sum_probs=269.3
Q ss_pred hHHHHHHHHHHHHHHhhhhhcchhhccccccHHHHHHhhhhhhhcccCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHH
Q 047115 2 TIFIVLSCIVAATSGLIFGYDIGVSGGVTLMEPFLKKCFLEVYKKMKEDPKISNYGKFDSQLLAAFTSSLYIAGLIAFLF 81 (522)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~~~~~s~~~~~~~i~~~~ 81 (522)
+++++.....+.++.+++++|....+... |.+.+++ |++..+.+++.+.+.+++.++.++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~------------------~~s~~~~~~~~~~~~~~~~~~~~~ 74 (496)
T PRK03893 15 NRAQWKAFSAAWLGYLLDGFDFVLITLVL--TEVQGEF------------------GLTTVQAASLISAAFISRWFGGLL 74 (496)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHh------------------CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777788888899999999887665 6666665 779999999999999999999999
Q ss_pred HHHhhhhhccccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhhhhHHHHHHHhhhhhhHHHHHHHHHHHhh
Q 047115 82 ASKVTRAFGRKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCCYSNHCSIGGAAFNIYMLILGCVLLGVG 161 (522)
Q Consensus 82 ~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~l~~~r~l~G~~ 161 (522)
.|+++||+|||++++ .+.++.++++++.+++++++.+++.|++.|++
T Consensus 75 ~g~l~dr~g~r~~~~---------------------------------~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~ 121 (496)
T PRK03893 75 LGAMGDRYGRRLAMV---------------------------------ISIVLFSVGTLACGFAPGYWTLFIARLVIGMG 121 (496)
T ss_pred HHHHHHHhCcHHHHH---------------------------------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 999999999999999 99999999999999999999999999999999
Q ss_pred hhhhhccccccccccccccccccccCCcc-hhHHHHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHhhHHHHHHHHH
Q 047115 162 IGFTSQSIQRFNQFAYMILLSSNFETTRL-SHIDFLLQISICYLILSANLLNYGTQKIKGSWGWRISLAMAAVPASILTI 240 (522)
Q Consensus 162 ~g~~~~~~~~~~~~~~~~~i~~~~~~~~~-g~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~gwr~~f~i~~~~~~~~~~ 240 (522)
.+...+....+ +.| ++|+++ ++..++...+..+|..+++.++..+.+. ++||+.|++.++..++.++
T Consensus 122 ~~~~~~~~~~~--------~~~-~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~---~~w~~~f~~~~~~~~~~~~ 189 (496)
T PRK03893 122 MAGEYGSSATY--------VIE-SWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPV---WGWRALFFIGILPIIFALW 189 (496)
T ss_pred HHHHHHHHHHH--------HHH-HcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---CCHHHHHHHHHHHHHHHHH
Confidence 99999988888 999 888888 9999999999999999999998887643 4899999887666655555
Q ss_pred HhcccCCChHHHHHhCCCHHHHHHHHHHHcCCcchHHHHH-HHHH--HHHhhc---------------------------
Q 047115 241 GSLFLPETPNSIIQRNKDHQKAEEILQIVRNTTDVKAELD-DIIR--ASSKII--------------------------- 290 (522)
Q Consensus 241 ~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~l~--------------------------- 290 (522)
....+||++++..++++ .++.++..+.....+....... .... .....+
T Consensus 190 ~~~~~p~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (496)
T PRK03893 190 LRKNLPEAEDWKEKHAG-KAPVRTMVDILYRGEHRIINILLTLAAAAALWFCFAGNLQNAAIVAVLGLLCAAIFISFMVQ 268 (496)
T ss_pred HHHhCCCchhhhhhccc-cccchhHHHHHhcchhHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHH
Confidence 55667887764322221 1111111111110000000000 0000 000000
Q ss_pred cccchhHHHHHHHHH-HhhhccchhhHhcHHHHHH-HcCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhhccchHHHHHH
Q 047115 291 HRIYRPQLVMAILIP-FQQVTRVNVISFNAPVLFM-TIKVRKSTSLLMSAVVPDGIGTVSTILPMILADKLGRTVLFLLG 368 (522)
Q Consensus 291 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~ 368 (522)
.+..+++........ +...........+.|.+++ +.|++..+.+ ...+...++.+++.++.++++||++||+.+..+
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~~~~~~g-~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~ 347 (496)
T PRK03893 269 SSGKRWPTGVMLMVVVLFAFLYSWPIQALLPTYLKTDLGYDPHTVA-NVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCS 347 (496)
T ss_pred hcccchhHHHHHHHHHHHHHhccchHHHHHHHHHHhhcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 001111111111111 2222222234567888884 7899999998 888999999999999999999999999988776
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCCCCcchhhHHHHHHHHHHHHhhhccccccccccccccCchhhhhHHHHHHHHHHHHHH
Q 047115 369 GIQILVSQVMIRSIMAAQLGDHGGFNIGYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFT 448 (522)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~ 448 (522)
.....+..+.+... .....+..... .....+.+.+..+....+..|.+|++.|++++|+.+....+++
T Consensus 348 ~~~~~~~~~~~~~~-----------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~ 415 (496)
T PRK03893 348 LLISQLLIIPVFAI-----------GGANVWVLGLL-LFFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGG 415 (496)
T ss_pred HHHHHHHHHHHhhc-----------cccHHHHHHHH-HHHHHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHH
Confidence 55544443322221 11112222111 1111222223333444566899999999999999999999999
Q ss_pred HHHHHHHHHHHHhccchh
Q 047115 449 FLVAQTFLAMLCHFKAGV 466 (522)
Q Consensus 449 ~~~~~~~~~~~~~~g~~~ 466 (522)
.++|.+.+.+.++.++..
T Consensus 416 ~lgp~l~g~l~~~~g~~~ 433 (496)
T PRK03893 416 ALAPILGALIAQRLDLGT 433 (496)
T ss_pred HHHHHHHHHHhccCChHH
Confidence 999999999999888543
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.6e-30 Score=272.44 Aligned_cols=403 Identities=12% Similarity=0.036 Sum_probs=265.6
Q ss_pred HHHHHHHHHHHHHHhhhhhcchhhccccccHHHHHHhhhhhhhcccCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHH
Q 047115 3 IFIVLSCIVAATSGLIFGYDIGVSGGVTLMEPFLKKCFLEVYKKMKEDPKISNYGKFDSQLLAAFTSSLYIAGLIAFLFA 82 (522)
Q Consensus 3 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~~~~~s~~~~~~~i~~~~~ 82 (522)
++++.......++.+...++...++... |.+.+++ |++.++.+++.+.+.+++.+++++.
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~------------------g~s~~~~g~~~~~~~~~~~~~~~~~ 78 (434)
T PRK11663 19 YWRRHILITMYLGYALFYFTRKSFNAAM--PEMLADL------------------GLSRSDIGLLATLFYITYGVSKFVS 78 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHhh--HHHHHhc------------------CCCHHHHHHHHHHHHHHHHHHHhhh
Confidence 3445566667777777777777766554 6666665 7899999999999999999999999
Q ss_pred HHhhhhhccccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhhhhHHHHHHHhhhhhhHHHHHHHHHHHhhh
Q 047115 83 SKVTRAFGRKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCCYSNHCSIGGAAFNIYMLILGCVLLGVGI 162 (522)
Q Consensus 83 g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~l~~~r~l~G~~~ 162 (522)
|+++||+|||+++. ++.++.++++++.++++|++.+++.|++.|++.
T Consensus 79 G~l~dr~g~r~~~~---------------------------------~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~ 125 (434)
T PRK11663 79 GIVSDRSNARYFMG---------------------------------IGLIATGIINILFGFSSSLWAFALLWVLNAFFQ 125 (434)
T ss_pred hHHHhhcCCchhHH---------------------------------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 99999999999999 999999999999999999999999999999999
Q ss_pred hhhhccccccccccccccccccccCCcc-hhHHHHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHhhHHHHHH-HHH
Q 047115 163 GFTSQSIQRFNQFAYMILLSSNFETTRL-SHIDFLLQISICYLILSANLLNYGTQKIKGSWGWRISLAMAAVPASI-LTI 240 (522)
Q Consensus 163 g~~~~~~~~~~~~~~~~~i~~~~~~~~~-g~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~gwr~~f~i~~~~~~~-~~~ 240 (522)
|...+....+ +.| ++++++ ++++++.+.+..+|..+++.+++.+.+. +|||+.|.+.++..++ .++
T Consensus 126 g~~~~~~~~~--------~~~-~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~---~gw~~~f~~~~i~~~~~~~~ 193 (434)
T PRK11663 126 GWGWPVCAKL--------LTA-WYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALH---YGWRYGMMIAGIIAIVVGLF 193 (434)
T ss_pred HccchHHHHH--------HHH-hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---ccHHHHHHHHHHHHHHHHHH
Confidence 9888888888 999 888887 9999999999999999999998877743 4899999887765544 344
Q ss_pred HhcccCCChHHHHHhCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHHhhccccchhHHHHHHHHHHhhhccchhhHhcHH
Q 047115 241 GSLFLPETPNSIIQRNKDHQKAEEILQIVRNTTDVKAELDDIIRASSKIIHRIYRPQLVMAILIPFQQVTRVNVISFNAP 320 (522)
Q Consensus 241 ~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (522)
..+++||+|++...+.. .+..++..+..+..++.+.+.++..+ ...+++ +..+......+........+..|.|
T Consensus 194 ~~~~~~~~p~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~p 267 (434)
T PRK11663 194 LCWRLRDKPQAMGLPSV-GEWRHDALELAQQQEGAGLSRKEILT--KYVLLN---PYIWLLSFSYVLVYVVRAAINDWGN 267 (434)
T ss_pred HHHHcCCCHhhcCCCCc-ccccccccccchhccccCCChhhhHH--HHHhcC---hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567888754211110 00000000000000000000111000 011221 2222222222333333445667888
Q ss_pred HHH-HHcCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhhc--cchHHH-HHHHHHHHHHHHHHHHHHHHhhCCCCCCcch
Q 047115 321 VLF-MTIKVRKSTSLLMSAVVPDGIGTVSTILPMILADKL--GRTVLF-LLGGIQILVSQVMIRSIMAAQLGDHGGFNIG 396 (522)
Q Consensus 321 ~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~--g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (522)
.++ ++.|++..+++ .......+++++++++.|+++||+ ++|+.. ........+....+.... ..
T Consensus 268 ~~l~~~~g~s~~~a~-~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~~-----------~~ 335 (434)
T PRK11663 268 LYMSETLGVDLVTAN-SAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWLMP-----------FA 335 (434)
T ss_pred HHHHhccCCCHHHHH-HHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHHcc-----------cc
Confidence 888 45699998888 888889999999999999999998 333332 222222222221111110 01
Q ss_pred hhHHHHHHHHHHHHhhhccccccccccccccCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchh-hHHHHHHHH
Q 047115 397 YAYLILFLICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLVAQTFLAMLCHFKAGV-FFCFGGWVA 475 (522)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~ 475 (522)
............ +.+..+..........|.+|++.|+++.|+.++..+++..++|.+.+.+.++.++.. +...+++.+
T Consensus 336 ~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~ 414 (434)
T PRK11663 336 SYVMQAACFFTI-GFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAG 414 (434)
T ss_pred cHHHHHHHHHHH-HHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHH
Confidence 111111111111 111111122223455799999999999999999999999999999999999988544 444545445
Q ss_pred HHHHHHHhhccCCC
Q 047115 476 FMTTFVHFFLPETK 489 (522)
Q Consensus 476 i~~~~~~~~~~~~~ 489 (522)
+.++..+...++++
T Consensus 415 ~~~~~~~~~~~~~~ 428 (434)
T PRK11663 415 ISALLLLPFLNAQA 428 (434)
T ss_pred HHHHHHHHHHhhhc
Confidence 55544444444433
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.2e-29 Score=253.59 Aligned_cols=371 Identities=15% Similarity=0.133 Sum_probs=282.9
Q ss_pred HHHHHHHHHHHHHhhhhhcchhhccccccHHHHHHhhhhhhhcccCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 047115 4 FIVLSCIVAATSGLIFGYDIGVSGGVTLMEPFLKKCFLEVYKKMKEDPKISNYGKFDSQLLAAFTSSLYIAGLIAFLFAS 83 (522)
Q Consensus 4 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g 83 (522)
..+...+..+++.|..|.+-.+..+.+ |++.+++ |+|..+.|++.|.|.++..++.|+..
T Consensus 10 ~~~~~l~aLa~~~F~igttEfv~~gLL--p~iA~dl------------------~vs~~~aG~lis~yAl~~ai~ap~l~ 69 (394)
T COG2814 10 PMWLALLALALAAFAIGTTEFVPVGLL--PPIAADL------------------GVSEGAAGQLITAYALGVALGAPLLA 69 (394)
T ss_pred cchHHHHHHHHHHHHHHhHHHHHHhch--HHHHHHc------------------CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777888888899999988888776 7776666 88999999999999999999999999
Q ss_pred HhhhhhccccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhhhhHHHHHHHhhhhhhHHHHHHHHHHHhhhh
Q 047115 84 KVTRAFGRKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCCYSNHCSIGGAAFNIYMLILGCVLLGVGIG 163 (522)
Q Consensus 84 ~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~l~~~r~l~G~~~g 163 (522)
.++||+.||++++ ..+.++.++++++++++||+.++++|++.|+..|
T Consensus 70 ~lt~r~~Rr~lLl---------------------------------~~l~lFi~~n~l~alAp~f~~Ll~aR~~~g~a~G 116 (394)
T COG2814 70 LLTGRLERRRLLL---------------------------------GLLALFIVSNLLSALAPSFAVLLLARALAGLAHG 116 (394)
T ss_pred HHHcccchHHHHH---------------------------------HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 9999999999999 9999999999999999999999999999999999
Q ss_pred hhhccccccccccccccccccccCCcc-hhHHHHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHhhHHHHHHHHH-H
Q 047115 164 FTSQSIQRFNQFAYMILLSSNFETTRL-SHIDFLLQISICYLILSANLLNYGTQKIKGSWGWRISLAMAAVPASILTI-G 241 (522)
Q Consensus 164 ~~~~~~~~~~~~~~~~~i~~~~~~~~~-g~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~gwr~~f~i~~~~~~~~~~-~ 241 (522)
.+++....+ ..+ ..|++| ++++++...+..++.++|.+++.++.+.. |||..|+..++..++.++ .
T Consensus 117 ~f~~i~~~~--------a~~-lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~---GWR~~F~~ia~l~ll~~~~~ 184 (394)
T COG2814 117 VFWSIAAAL--------AAR-LVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLF---GWRATFLAIAVLALLALLLL 184 (394)
T ss_pred HHHHHHHHH--------HHH-HcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHh---hHHHHHHHHHHHHHHHHHHH
Confidence 999999999 999 999999 99999999999999999999999998665 899999987777666544 4
Q ss_pred hcccCCChHHHHHhCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHHhhccccchhHHHHHHHHHHhhhccchhhHhcHHH
Q 047115 242 SLFLPETPNSIIQRNKDHQKAEEILQIVRNTTDVKAELDDIIRASSKIIHRIYRPQLVMAILIPFQQVTRVNVISFNAPV 321 (522)
Q Consensus 242 ~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (522)
+..+| |+.. .+.+ ..+.++.. +.++ ++..+..+...+..+.+.+....|...
T Consensus 185 ~~~lP--~~~~-~~~~-~~~~~~~~---------------------~~l~---~p~v~~~l~~t~l~~~g~F~~ftYi~P 236 (394)
T COG2814 185 WKLLP--PSEI-SGSL-PGPLRTLL---------------------RLLR---RPGVLLGLLATFLFMTGHFALYTYIRP 236 (394)
T ss_pred HHhCC--CccC-CCCC-CcchhHHH---------------------HHhc---CchHHHHHHHHHHHHcchhhhHHhHHH
Confidence 55678 2110 0111 11111111 2233 334444444444444444444455544
Q ss_pred HH-HHcCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcchhhHH
Q 047115 322 LF-MTIKVRKSTSLLMSAVVPDGIGTVSTILPMILADKLGRTVLFLLGGIQILVSQVMIRSIMAAQLGDHGGFNIGYAYL 400 (522)
Q Consensus 322 ~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (522)
++ +..|++.+..+ +....+++++++|..++|++.|| +.|+.+.....+..+..+.+.+.. .+.+.
T Consensus 237 ~L~~v~g~s~~~vs-~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~~------------~~~~~ 302 (394)
T COG2814 237 FLESVAGFSVSAVS-LVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTFTG------------ASPAL 302 (394)
T ss_pred HHHHccCCCHhHHH-HHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHHhc------------chHHH
Confidence 44 56699999999 99999999999999999999999 888888877777777766655542 22333
Q ss_pred HHHHHHHHHHhhhcccccccc-ccccccCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHH
Q 047115 401 ILFLICVYKAGFAFSRGPLGW-LVPSEIFPLEIRSAGQSITVAVDLLFTFLVAQTFLAMLCHFKAGVFFCFGGWVAFMTT 479 (522)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~-~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~ 479 (522)
.+....+ .++.....+..+ ...++ .-++.+..+.+++....+++..++..+.|.+.|+.|+......++...+.+.
T Consensus 303 ~~~~~~~--wg~a~~~~~~~~~~~~a~-~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~ 379 (394)
T COG2814 303 ALALLFL--WGFAFSPALQGLQTRLAR-LAPDAADLAGSLNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLAL 379 (394)
T ss_pred HHHHHHH--HHHHhhhhhhHHHHHhcc-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Confidence 3333333 333333232222 33345 3357889999999999999999999999999999887766666666666665
Q ss_pred HHHhh
Q 047115 480 FVHFF 484 (522)
Q Consensus 480 ~~~~~ 484 (522)
...+.
T Consensus 380 ~~~~~ 384 (394)
T COG2814 380 LLALL 384 (394)
T ss_pred HHHHH
Confidence 55443
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-29 Score=265.88 Aligned_cols=363 Identities=13% Similarity=0.171 Sum_probs=242.7
Q ss_pred HHHHHHHHHHHHhhhhhcchhhccccccHHHHHHhhhhhhhcccCCCCCCCCCCCchhHHHHH-HHH-----HHHHHHHH
Q 047115 5 IVLSCIVAATSGLIFGYDIGVSGGVTLMEPFLKKCFLEVYKKMKEDPKISNYGKFDSQLLAAF-TSS-----LYIAGLIA 78 (522)
Q Consensus 5 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~~~~-~s~-----~~~~~~i~ 78 (522)
++.......++.+++.+|...++... |.+.++++ .++.+.+.+ .+. .+++..++
T Consensus 13 ~~~~~~~~~~~~~~~~~d~~~~~~~~--~~i~~~~~------------------~~~~~~~~~~~~~~~~~~~~l~~~ig 72 (434)
T PRK15075 13 KARAILRVTSGNFLEMFDFFLFGFYA--TAIAKTFF------------------PAGNEFASLMLTFAVFGAGFLMRPLG 72 (434)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhC------------------CCCCchHHHHHHHHHHHHHHHHhhhH
Confidence 45567788889999999999998776 77777763 344443332 222 23344578
Q ss_pred HHHHHHhhhhhccccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhhhhHHHHHHHhhhhhhH--------H
Q 047115 79 FLFASKVTRAFGRKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCCYSNHCSIGGAAFNIY--------M 150 (522)
Q Consensus 79 ~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~--------~ 150 (522)
+++.|+++||+|||++++ .+.+++++++++++++++++ .
T Consensus 73 ~~~~G~l~Dr~Grr~~l~---------------------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 119 (434)
T PRK15075 73 AIVLGAYIDRVGRRKGLI---------------------------------VTLSIMASGTLLIAFVPGYATIGLAAPLL 119 (434)
T ss_pred HHHHHHHhhhhchHHHHH---------------------------------HHHHHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 999999999999999999 99999999999999999987 4
Q ss_pred HHHHHHHHHhhhhhhhccccccccccccccccccccCCcc-hhHHHHHHHHHHHHHHHHHHHHhhhhccC-----CCCch
Q 047115 151 LILGCVLLGVGIGFTSQSIQRFNQFAYMILLSSNFETTRL-SHIDFLLQISICYLILSANLLNYGTQKIK-----GSWGW 224 (522)
Q Consensus 151 l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~-g~~~~~~~~~~~lG~~~~~~~~~~l~~~~-----~~~gw 224 (522)
++++|+++|++.|...+....+ ++| ++|+++ ++.+++...+..+|..+++.++..+.... +.+||
T Consensus 120 l~~~R~l~G~~~g~~~~~~~~~--------~~e-~~p~~~rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gW 190 (434)
T PRK15075 120 VLLGRLLQGFSAGVELGGVSVY--------LAE-IATPGRKGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGW 190 (434)
T ss_pred HHHHHHHhhccccccHHHHHHH--------HHh-hCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccch
Confidence 6889999999999999888888 999 888888 99999999988888888888777654221 24689
Q ss_pred HHHHHhhHHHHHHHHHHhcccCCChHHHHHhCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHHhhccccchhHHHHHHHH
Q 047115 225 RISLAMAAVPASILTIGSLFLPETPNSIIQRNKDHQKAEEILQIVRNTTDVKAELDDIIRASSKIIHRIYRPQLVMAILI 304 (522)
Q Consensus 225 r~~f~i~~~~~~~~~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 304 (522)
|++|++..+...+........||++++..++++ . +.++..+ +..+ .++........
T Consensus 191 r~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~-~--------------~~~~~~~-------~~~~--~~~~~~~~~~~ 246 (434)
T PRK15075 191 RIPFLIGCLIVPFIFLIRRSLEETEEFLARKHR-P--------------SMREIFR-------SLAA--NWRIVLAGMLM 246 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCHHHHHhhhc-c--------------ccccHHH-------HHHH--hHHHHHHHHHH
Confidence 999998655443333333345555432111100 0 0000011 1111 11222222222
Q ss_pred HHhhhccchhhHhcHHHHHHH-cCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHH
Q 047115 305 PFQQVTRVNVISFNAPVLFMT-IKVRKSTSLLMSAVVPDGIGTVSTILPMILADKLGRTVLFLLGGIQILVSQVMIRSIM 383 (522)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~ 383 (522)
.+......+.+..|.|.++++ .|++..+.. +......++++++.++.|+++||++||+.+..+.....+.........
T Consensus 247 ~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~ 325 (434)
T PRK15075 247 VAMTTVSFYLITVYTPTFGKTVLHLSAADSL-LVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWL 325 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 233444456677889999875 699988887 778888899999999999999999999987765444322211111110
Q ss_pred HHhhCCCCCCcchhhHHHHHHHHHHHHhhhccccccccccccccCchhhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHhc
Q 047115 384 AAQLGDHGGFNIGYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLL-FTFLVAQTFLAMLCHF 462 (522)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~ 462 (522)
. + ..... .......+...+++. ..+..+.+..|.+|++.|+++.++.+.++.. ++.++|.+.+.+.|+.
T Consensus 326 -~---~----~~~~~-~~~~~~~~~~~~~g~-~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~ 395 (434)
T PRK15075 326 -V---A----APSFA-RMLAVELWLSFLYGS-YNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVT 395 (434)
T ss_pred -H---c----CCchH-HHHHHHHHHHHHHHH-HHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhc
Confidence 0 0 11111 111111122222222 2233345668999999999999997666554 5788999999999988
Q ss_pred cc
Q 047115 463 KA 464 (522)
Q Consensus 463 g~ 464 (522)
++
T Consensus 396 g~ 397 (434)
T PRK15075 396 GD 397 (434)
T ss_pred CC
Confidence 74
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.7e-29 Score=259.77 Aligned_cols=345 Identities=12% Similarity=0.004 Sum_probs=245.2
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhhhhHH
Q 047115 58 KFDSQLLAAFTSSLYIAGLIAFLFASKVTRAFGRKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCCYSN 137 (522)
Q Consensus 58 ~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 137 (522)
++|..+.+++.+.+.+++.+++++.|+++||+|||+++. .+..++++
T Consensus 40 ~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~---------------------------------~~~~l~~~ 86 (393)
T PRK09705 40 GMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVA---------------------------------ISLLLIAV 86 (393)
T ss_pred CCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHH---------------------------------HHHHHHHH
Confidence 789999999999999999999999999999999999999 99999999
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHhhhhhhhccccccccccccccccccccCCcchhHHHHHHHHHHHHHHHHHHHHhhhhc
Q 047115 138 HCSIGGAAFNIYMLILGCVLLGVGIGFTSQSIQRFNQFAYMILLSSNFETTRLSHIDFLLQISICYLILSANLLNYGTQK 217 (522)
Q Consensus 138 ~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~lG~~~~~~~~~~l~~ 217 (522)
+.+.+++++|++.++++|+++|++.+...+....+ +.+ ++|++++++++.+..+..+|..+++.++..+.+
T Consensus 87 ~~~~~~~a~~~~~ll~~r~l~Gig~~~~~~~~~~~--------~~~-~~~~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~ 157 (393)
T PRK09705 87 GALMRELYPQSALLLSSALLGGVGIGIIQAVMPSV--------IKR-RFQQRTPLVMGLWSAALMGGGGLGAAITPWLVQ 157 (393)
T ss_pred HHHHHHHCcchHHHHHHHHHHHhHHHHHhhhhhHH--------HHH-HccccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998888888 999 787444999999999999999999998887764
Q ss_pred cCCCCchHHHHHhhHHHHHHHHHHhccc-CCChHHHHHhCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHHhhccccchh
Q 047115 218 IKGSWGWRISLAMAAVPASILTIGSLFL-PETPNSIIQRNKDHQKAEEILQIVRNTTDVKAELDDIIRASSKIIHRIYRP 296 (522)
Q Consensus 218 ~~~~~gwr~~f~i~~~~~~~~~~~~~~l-pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 296 (522)
.. .+||+.+.+.++..++.....+.. ++.|+ +++ .++ . +. .+.++ ++
T Consensus 158 ~~--~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~~~--~---------~~-----------~~~l~---~~ 205 (393)
T PRK09705 158 HS--ETWYQTLAWWALPAVVALFAWWWQSAREVA----SSH-KTT--T---------TP-----------VRVVF---TP 205 (393)
T ss_pred hc--CCHHHHHHHHHHHHHHHHHHHHHHhcCCCc----ccc-CCC--c---------CC-----------ccccc---CH
Confidence 43 279988766555444333332222 22111 000 000 0 00 01111 12
Q ss_pred HHHHHHHHHHhhhccchhhHhcHHHHHHHcCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhhccchHHHHHHHHHHHHHH
Q 047115 297 QLVMAILIPFQQVTRVNVISFNAPVLFMTIKVRKSTSLLMSAVVPDGIGTVSTILPMILADKLGRTVLFLLGGIQILVSQ 376 (522)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~ 376 (522)
+.+...+..+.....+.....+.|.++++.|++..+++ .......++.++++++.+++.||++||+....+..+..++.
T Consensus 206 ~~~~l~~~~~~~~~~~~~~~~~lp~~l~~~g~s~~~ag-~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~ 284 (393)
T PRK09705 206 RAWTLGVYFGLINGGYASLIAWLPAFYIEIGASAQYSG-SLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGF 284 (393)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhhh-HHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH
Confidence 22222222233333445667788988888899998888 88899999999999999999999999998888766666655
Q ss_pred HHHHHHHHHhhCCCCCCcchhhHHHHHHHHHHHHhhhccccccccccccccC-chhhhhHHHHHHHHHHHHHHHHHHHHH
Q 047115 377 VMIRSIMAAQLGDHGGFNIGYAYLILFLICVYKAGFAFSRGPLGWLVPSEIF-PLEIRSAGQSITVAVDLLFTFLVAQTF 455 (522)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-p~~~r~~~~g~~~~~~~~~~~~~~~~~ 455 (522)
.++... +.... ... .++.+.+.+... +.......+.. |++.|++..|+.+..+.+++.++|.+.
T Consensus 285 ~~~~~~-----------~~~~~-~~~--~~l~g~g~g~~~-~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~ 349 (393)
T PRK09705 285 CGFIWL-----------PLQLP-VLW--AMVCGLGLGGAF-PLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFS 349 (393)
T ss_pred HHHHHc-----------cchHH-HHH--HHHHHHhccchH-HHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 443322 11111 111 122233333222 23333334555 568899999999999999999999999
Q ss_pred HHHHHhcc-chh-hHHHHHHHHHHHHHHHhhccCCCCCC
Q 047115 456 LAMLCHFK-AGV-FFCFGGWVAFMTTFVHFFLPETKYMP 492 (522)
Q Consensus 456 ~~~~~~~g-~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~ 492 (522)
+.+.|+.| +.. +.+....+++..+....+.||+++|.
T Consensus 350 G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (393)
T PRK09705 350 GVLRSISGNYLMDWAFHALCVVGLMIITLRFAPARFPQL 388 (393)
T ss_pred HHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccccccch
Confidence 99999887 443 34444444444455566778877664
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.9e-30 Score=272.07 Aligned_cols=375 Identities=10% Similarity=-0.043 Sum_probs=248.1
Q ss_pred HHHHHHHHHHHHhhhhhcchhhccccccHHHHHHhhhhhhhcccCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 047115 5 IVLSCIVAATSGLIFGYDIGVSGGVTLMEPFLKKCFLEVYKKMKEDPKISNYGKFDSQLLAAFTSSLYIAGLIAFLFASK 84 (522)
Q Consensus 5 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~ 84 (522)
.+.+.....++.+....|...++... |++.+++ |++.++.|++.+.+.+++.+++++.|+
T Consensus 27 ~~~i~~~~~~~~~~~y~~r~~~~~~~--~~i~~~~------------------~~s~~~~g~~~s~~~~~~~~~~~~~G~ 86 (467)
T PRK09556 27 FMQSYLVVFIGYLTMYLIRKNFKAAQ--NDMISTY------------------GLSTTELGMIGLGFSITYGVGKTLVGY 86 (467)
T ss_pred HHHHHHHHHHHHHHHHHHhcChhhhh--HHHHHhc------------------CCCHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 45556667777777777888888665 6766666 789999999999999999999999999
Q ss_pred hhhhhccccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhhhhHHHHHHHhh-----hhhhHHHHHHHHHHH
Q 047115 85 VTRAFGRKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCCYSNHCSIGGA-----AFNIYMLILGCVLLG 159 (522)
Q Consensus 85 l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----a~~~~~l~~~r~l~G 159 (522)
++||+|||+++. .+.++++++.+..++ ++|++.+++.|+++|
T Consensus 87 l~Dr~g~r~~l~---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G 133 (467)
T PRK09556 87 YADGKNTKQFLP---------------------------------FLLILSAICMLGFGASLGSGSVSLGLMIALWALSG 133 (467)
T ss_pred HhhccCccchHH---------------------------------HHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 999999999998 777666666655444 689999999999999
Q ss_pred hhhhhhhccccccccccccccccccccCCcc-hhHHHHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHhhHHHHHH-
Q 047115 160 VGIGFTSQSIQRFNQFAYMILLSSNFETTRL-SHIDFLLQISICYLILSANLLNYGTQKIKGSWGWRISLAMAAVPASI- 237 (522)
Q Consensus 160 ~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~-g~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~gwr~~f~i~~~~~~~- 237 (522)
++.+...+....+ ++| ++|+++ |+++++.+.+.++|.++++.+...+.......+||..|.+.++..++
T Consensus 134 ~~~~~~~~~~~~~--------i~~-~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~~g~~~~~~ 204 (467)
T PRK09556 134 FFQSTGGPCSYST--------ITR-WTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGMFIFPSIIALII 204 (467)
T ss_pred HHHhccchHHHHH--------HHH-HcCccceeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchhHHHHHHHHHHHH
Confidence 9999999988888 999 888887 99999999999999999998876554321112699888876655544
Q ss_pred HHHHhcccCCChHHHHHhCCCHHHH-HHHHHHHcCCcchHHHHHHHHHHHHhhccccchhHHHHHHHHHHhhhccchhhH
Q 047115 238 LTIGSLFLPETPNSIIQRNKDHQKA-EEILQIVRNTTDVKAELDDIIRASSKIIHRIYRPQLVMAILIPFQQVTRVNVIS 316 (522)
Q Consensus 238 ~~~~~~~lpesp~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (522)
.++.+++.+++|+.... .+ .++. ++.....+.. +.+++....+...+..+++ +..+......++.........
T Consensus 205 ~i~~~~~~~~~p~~~~~-~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~ 278 (467)
T PRK09556 205 GFIGLRYGSDSPEELGW-GK-AEEIFGEPISEEDKE-TESTDMTKWQIFVEYVLKN---PVIWLLCFANIFLYIVRIGID 278 (467)
T ss_pred HHHHHHhCCCChhhcCC-CC-hhhcccCccchhhhc-cccccCcHHHHHHHHHHcC---hHHHHHHHHHHHHHHHHHHHH
Confidence 34444556776642100 01 1110 0000000000 0000000000000112322 223333333344444445577
Q ss_pred hcHHHHHH-HcCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcc
Q 047115 317 FNAPVLFM-TIKVRKSTSLLMSAVVPDGIGTVSTILPMILADKLGRTVLFLLGGIQILVSQVMIRSIMAAQLGDHGGFNI 395 (522)
Q Consensus 317 ~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (522)
.|.|.+++ ..|++..+++ .......++.+++.++.|+++||++||+..........++...+.... .
T Consensus 279 ~~~p~yl~~~~g~s~~~a~-~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~----------~- 346 (467)
T PRK09556 279 NWSPVYAFQELGFSKEDAI-NTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQH----------A- 346 (467)
T ss_pred HHHHHHHHHccCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHh----------c-
Confidence 88998885 5799998888 888888999999999999999999998876654433333222211110 1
Q ss_pred hhhHHHHHHHHHHHHhhhccccccccccccccCchhhhhHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q 047115 396 GYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLL-FTFLVAQTFLAMLC 460 (522)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~-~~~~~~~~~~~~~~ 460 (522)
...+...+..+..+... .+..........|.+|++.||++.|+.+..+++ +.+++|.+.|.+.|
T Consensus 347 ~~~~~~~~~~~~~G~~~-~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~ 411 (467)
T PRK09556 347 TSEYMYLASLFALGFLV-FGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIAD 411 (467)
T ss_pred CcHHHHHHHHHHHHHHH-hhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhc
Confidence 11222222222222111 111112124446999999999999999999997 66999999999999
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.1e-29 Score=256.40 Aligned_cols=370 Identities=11% Similarity=0.074 Sum_probs=253.1
Q ss_pred HHHHHHHHHHHHHhhhhhcchhhccccccHHHHHHhhhhhhhcccCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 047115 4 FIVLSCIVAATSGLIFGYDIGVSGGVTLMEPFLKKCFLEVYKKMKEDPKISNYGKFDSQLLAAFTSSLYIAGLIAFLFAS 83 (522)
Q Consensus 4 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g 83 (522)
++|.......++++...++.....+.. |++.+++ |+++++.+++.+.+.+++.+++++.|
T Consensus 6 ~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~l~~~~------------------~~s~~~~g~~~~~~~~~~~~~~~~~g 65 (390)
T PRK03545 6 VAWLRVVTLALAAFIFNTTEFVPVGLL--SDIAQSF------------------HMQTAQVGLMLTIYAWVVALMSLPLM 65 (390)
T ss_pred cchHHHHHHHHHHHHHHhHHHHHHcch--HHHHhHc------------------CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555665566555544443333 6665555 78999999999999999999999999
Q ss_pred HhhhhhccccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhhhhHHHHHHHhhhhhhHHHHHHHHHHHhhhh
Q 047115 84 KVTRAFGRKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCCYSNHCSIGGAAFNIYMLILGCVLLGVGIG 163 (522)
Q Consensus 84 ~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~l~~~r~l~G~~~g 163 (522)
.++||+|||+++. .+.++.+++++.+++++|++.++++|+++|++.+
T Consensus 66 ~l~dr~g~r~~~~---------------------------------~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~ 112 (390)
T PRK03545 66 LLTSNVERRKLLI---------------------------------GLFVLFIASHVLSALAWNFTVLLISRIGIAFAHA 112 (390)
T ss_pred HHHcCCChHHHHH---------------------------------HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 9999999999999 9999999999999999999999999999999999
Q ss_pred hhhccccccccccccccccccccCCcc-hhHHHHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHhhHHHHHHHHH-H
Q 047115 164 FTSQSIQRFNQFAYMILLSSNFETTRL-SHIDFLLQISICYLILSANLLNYGTQKIKGSWGWRISLAMAAVPASILTI-G 241 (522)
Q Consensus 164 ~~~~~~~~~~~~~~~~~i~~~~~~~~~-g~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~gwr~~f~i~~~~~~~~~~-~ 241 (522)
...+....+ +.| +.|+++ ++++++...+..+|..+++.+++.+.+. .|||+.|++.++..++..+ .
T Consensus 113 ~~~~~~~~~--------i~~-~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~---~gw~~~f~~~~~~~~l~~~~~ 180 (390)
T PRK03545 113 IFWSITASL--------AIR-VAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQY---LGWRTTFLAIGGGALITLLLL 180 (390)
T ss_pred HHHHHHHHH--------HHH-hCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHH---hcHHHHHHHHHHHHHHHHHHH
Confidence 988888888 999 888887 9999999999999999999999887744 4899999997776655433 3
Q ss_pred hcccCCChHHHHHhCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHHhhccccchhHHHHHHHHHHhhhccchhhHhcHHH
Q 047115 242 SLFLPETPNSIIQRNKDHQKAEEILQIVRNTTDVKAELDDIIRASSKIIHRIYRPQLVMAILIPFQQVTRVNVISFNAPV 321 (522)
Q Consensus 242 ~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (522)
..++||.|+ ++ +++.+ + .++.++++..+........ ..........+.+.
T Consensus 181 ~~~~~~~~~-----~~-~~~~~-----------------~----~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 230 (390)
T PRK03545 181 IKLLPLLPS-----EH-SGSLK-----------------S----LPLLFRRPALVSLYLLTVV---VVTAHFTAYSYIEP 230 (390)
T ss_pred HHhCCCCCC-----CC-cchHH-----------------H----HHHHHhCcHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 344666542 11 11000 0 0123333322222221111 11112223345555
Q ss_pred HHH-HcCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcchhhHH
Q 047115 322 LFM-TIKVRKSTSLLMSAVVPDGIGTVSTILPMILADKLGRTVLFLLGGIQILVSQVMIRSIMAAQLGDHGGFNIGYAYL 400 (522)
Q Consensus 322 ~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (522)
+++ ..|++..+.+ .......+++++++++.+++.||+++|+.. .+......+...+.... ...+.
T Consensus 231 ~l~~~~g~s~~~~~-~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~-~~~~~~~~~~~~l~~~~------------~~~~~ 296 (390)
T PRK03545 231 FVQQVAGLSENFAT-LLLLLFGGAGIIGSVLFSRLGNRHPSGFLL-IAIALLLVCLLLLLPAA------------NSEWH 296 (390)
T ss_pred HHHHhcCCCccHHH-HHHHHHHHHHHHHHHHHHHHhhccchhHHH-HHHHHHHHHHHHHHHHh------------chHHH
Confidence 554 4689988888 888888999999999999999999987654 33333333332222211 11223
Q ss_pred HHHHHHHHHHhhhccccccccccccccCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHH-HH
Q 047115 401 ILFLICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLVAQTFLAMLCHFKAGVFFCFGGWVAFM-TT 479 (522)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~-~~ 479 (522)
......+.+.+.. ...+.......|..| +.|+++.|+.+...+++..++|.+.|.+.++.++...+...+.+.+. ..
T Consensus 297 ~~~~~~l~g~~~~-~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~ 374 (390)
T PRK03545 297 LSVLSIFWGIAIM-CIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALV 374 (390)
T ss_pred HHHHHHHHHHHHh-cchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHH
Confidence 3333333333332 222333344456666 68899999999999999999999999999999865444444444343 44
Q ss_pred HHHhh
Q 047115 480 FVHFF 484 (522)
Q Consensus 480 ~~~~~ 484 (522)
+.+..
T Consensus 375 ~~~~~ 379 (390)
T PRK03545 375 WSILI 379 (390)
T ss_pred HHHHH
Confidence 44333
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.8e-30 Score=254.67 Aligned_cols=397 Identities=14% Similarity=0.056 Sum_probs=275.3
Q ss_pred HHHHHHHHHHHHHHhhhhhcchhhccccccHHHHHHhhhhhhhcccCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHH
Q 047115 3 IFIVLSCIVAATSGLIFGYDIGVSGGVTLMEPFLKKCFLEVYKKMKEDPKISNYGKFDSQLLAAFTSSLYIAGLIAFLFA 82 (522)
Q Consensus 3 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~~~~~s~~~~~~~i~~~~~ 82 (522)
++++.+.+...++...+.+..-.++.+ +|.++++. ++|.+|+|.+.|.+++++.++-.+.
T Consensus 25 ~~r~qif~~~fiGYa~fYl~RknF~~a--~p~l~e~~------------------~lsk~~lG~i~s~f~i~YG~sKf~~ 84 (448)
T COG2271 25 RWRIQIFLSIFIGYAAFYLTRKNFNLA--MPALIEDG------------------GLSKTQLGILGSAFSITYGVSKFVM 84 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhc--cHHHHHhc------------------CCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 345566666777777767666666644 46766665 6799999999999999999999999
Q ss_pred HHhhhhhccccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhhhhHHHHHHHhhhhhhHHHHHHHHHHHhhh
Q 047115 83 SKVTRAFGRKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCCYSNHCSIGGAAFNIYMLILGCVLLGVGI 162 (522)
Q Consensus 83 g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~l~~~r~l~G~~~ 162 (522)
|.++||.++|+.+. .++++.++.+++++++++.+.+.+..++.|..+
T Consensus 85 G~~sDr~npr~fm~---------------------------------~gLilsai~nil~Gfs~s~~~~~~l~~lng~fQ 131 (448)
T COG2271 85 GVLSDRSNPRYFMA---------------------------------FGLILSAIVNILFGFSPSLFLFAVLWVLNGWFQ 131 (448)
T ss_pred hhhcccCCCceeeh---------------------------------HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHh
Confidence 99999999999999 999999999999999999999999999999999
Q ss_pred hhhhccccccccccccccccccccCCcc-hhHHHHHHHHHHHHHHHHHHHH--hhhhccCCCCchHHHHHhhHHHHHH-H
Q 047115 163 GFTSQSIQRFNQFAYMILLSSNFETTRL-SHIDFLLQISICYLILSANLLN--YGTQKIKGSWGWRISLAMAAVPASI-L 238 (522)
Q Consensus 163 g~~~~~~~~~~~~~~~~~i~~~~~~~~~-g~~~~~~~~~~~lG~~~~~~~~--~~l~~~~~~~gwr~~f~i~~~~~~~-~ 238 (522)
|.-.|.+... ++. |+++++ |+..++++.+.++|..+.+++. +.+.. +.+||..|++.++.+++ .
T Consensus 132 g~Gwpp~~~~--------i~~-Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~---~~~w~~~f~~pgiiaiiva 199 (448)
T COG2271 132 GMGWPPCART--------ITH-WFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAF---HGGWRAAFYFPGIIAIIVA 199 (448)
T ss_pred cCCCcHHHHH--------HHH-HcCccccCceEEEehhhhhcccchHHHHHHHHHHHh---ccchhHHHHHHHHHHHHHH
Confidence 9999999999 999 777777 9999999999999999999988 55553 34899999998777665 5
Q ss_pred HHHhcccCCChHHHHHhCCCHHHHHH-HHHHHcCCcchHHHHHHHHHHHHhhccccchhHHHHHHHHH-HhhhccchhhH
Q 047115 239 TIGSLFLPETPNSIIQRNKDHQKAEE-ILQIVRNTTDVKAELDDIIRASSKIIHRIYRPQLVMAILIP-FQQVTRVNVIS 316 (522)
Q Consensus 239 ~~~~~~lpesp~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 316 (522)
++.++..+|+|+..--+ + .++.++ ..+..+ +++.++.+...+ ..++...+++.++.+++. +.....-+.+.
T Consensus 200 l~~~~~~rd~Pqs~GLP-~-ie~~~~d~~e~~~-~~~~~~~ls~~~----i~~~YVL~Nk~iW~la~a~vfvYivR~gi~ 272 (448)
T COG2271 200 LILLFLLRDRPQSEGLP-P-IEEYRGDPLEIYE-EEKENEGLTAWQ----IFVKYVLKNKLIWLLALANVFVYVVRYGIN 272 (448)
T ss_pred HHHHHHhCCCccccCCC-C-HHHhhcCchhhhh-hhccCCCccHHH----HHHHHHHcChHHHHHHHHHHHHHHHHHHHh
Confidence 55666678888532100 0 111110 000000 000000011111 112222334445555555 55555566788
Q ss_pred hcHHHHHH-HcCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhhc--cchHHHHH-HHHHHHHHHHHHHHHHHHhhCCCCC
Q 047115 317 FNAPVLFM-TIKVRKSTSLLMSAVVPDGIGTVSTILPMILADKL--GRTVLFLL-GGIQILVSQVMIRSIMAAQLGDHGG 392 (522)
Q Consensus 317 ~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~--g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (522)
.|.|.|+. ..|++...+. ...+.+-+++++|++++|+++||+ |||....+ ..++..++.+.+...
T Consensus 273 dW~p~YL~e~k~~s~~~a~-~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~~~~w~~---------- 341 (448)
T COG2271 273 DWGPLYLSEVKGFSLVKAN-WAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLITASLVLYWLA---------- 341 (448)
T ss_pred hhHHHHHHHhcCCCHHHHH-HHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHcC----------
Confidence 99999984 5699999999 999999999999999999999996 45544333 222223332222221
Q ss_pred CcchhhHHHHHHHHHHHHhh-hccccccccccccccCchhhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHhccchh-hHH
Q 047115 393 FNIGYAYLILFLICVYKAGF-AFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLL-FTFLVAQTFLAMLCHFKAGV-FFC 469 (522)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~g~~~-~~~ 469 (522)
+.. .+. +...+++..++ -.+...+......|..|++..|++.|+...++++ |+..+....+.+.|++||.. |.+
T Consensus 342 -~~~-~~~-l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~ 418 (448)
T COG2271 342 -PNG-SYL-LDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADTWGWDGGFIV 418 (448)
T ss_pred -CCc-cHH-HHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEecCCCcchHHH
Confidence 112 222 22222222332 2233334446668999999999999999999999 88888888999989888654 444
Q ss_pred HHHHHHHHHHHHHhhc
Q 047115 470 FGGWVAFMTTFVHFFL 485 (522)
Q Consensus 470 ~~~~~~i~~~~~~~~~ 485 (522)
+.+.+.+..++.....
T Consensus 419 ~~~~a~l~~lll~~~~ 434 (448)
T COG2271 419 LSIAALLAILLLLPVW 434 (448)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444333333
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.5e-29 Score=240.52 Aligned_cols=375 Identities=15% Similarity=0.144 Sum_probs=285.7
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhhh
Q 047115 55 NYGKFDSQLLAAFTSSLYIAGLIAFLFASKVTRAFGRKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCC 134 (522)
Q Consensus 55 ~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 134 (522)
..++.+..+..++......|..+++-.+|.++|++|||+.+. ...+.
T Consensus 106 ~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~---------------------------------~T~l~ 152 (528)
T KOG0253|consen 106 EVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFN---------------------------------LTFLV 152 (528)
T ss_pred hhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhh---------------------------------hhHHH
Confidence 334678889999999999999999999999999999999999 89999
Q ss_pred hHHHHHHHhhhhhhHHHHHHHHHHHhhhhhhhccccccccccccccccccccCCcc-hhHHHHHHHHHHHHHHHHHHHHh
Q 047115 135 YSNHCSIGGAAFNIYMLILGCVLLGVGIGFTSQSIQRFNQFAYMILLSSNFETTRL-SHIDFLLQISICYLILSANLLNY 213 (522)
Q Consensus 135 ~~~~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~-g~~~~~~~~~~~lG~~~~~~~~~ 213 (522)
..+...+.++++|+..+++.|.+.|+|.|+ .|...++ -.| +-|..+ ...+... ..+.+|.+....++.
T Consensus 153 t~v~~~is~~spnf~~L~~f~~l~~~g~gg-~pv~~~~--------yle-~lp~~~r~~~~V~~-~~waig~v~ea~law 221 (528)
T KOG0253|consen 153 TGVFGVISGASPNFASLCVFRALWGFGVGG-LPVDSAI--------YLE-FLPSSHRWLLTVMS-FFWAIGQVFEALLAW 221 (528)
T ss_pred HHHHHHhhcCCCCeehhhHHHHHHhccCCC-ccHhHHH--------HHH-hccCcCCCcchhHH-HHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998 6666666 788 777766 6666555 899999999999998
Q ss_pred hhhccCCCCchHHHHHhhHHHHHHHHHHhcccCCChHHHHHhCCCHHHHHHHHHHHcCCcc-----------hH----HH
Q 047115 214 GTQKIKGSWGWRISLAMAAVPASILTIGSLFLPETPNSIIQRNKDHQKAEEILQIVRNTTD-----------VK----AE 278 (522)
Q Consensus 214 ~l~~~~~~~gwr~~f~i~~~~~~~~~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~----~~ 278 (522)
...... ||||......++..+.....+++|||||+...+++ ++++-+.++++...+. .+ +|
T Consensus 222 ~vm~~~---gwr~~l~~~~~pl~~~a~f~~w~~ESpRf~~~~G~-~~kAletL~kiArmNg~qlplgvl~~s~~~~~e~e 297 (528)
T KOG0253|consen 222 GVMSNF---GWRYLLFTSSTPLMFAARFLVWVYESPRFYLAKGD-DYKALETLHKIARMNGKQLPLGVLESSAIDRQEQE 297 (528)
T ss_pred HHHHhh---hHHHHHHHHHhHHHHHHHHHhhcccCcchhhhcCC-hHHHHHHHHHHHHhcCCCCCcceeeeehhhhhhhh
Confidence 888544 89999988888888888888999999999999999 8888777776643221 00 11
Q ss_pred ---HHHHH--------HHHHhhccccchhHHHHHHHHHHhhhccchhhHhcHHHHHHHcC--------------------
Q 047115 279 ---LDDII--------RASSKIIHRIYRPQLVMAILIPFQQVTRVNVISFNAPVLFMTIK-------------------- 327 (522)
Q Consensus 279 ---~~~~~--------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-------------------- 327 (522)
+++.+ ....+++.++.++..+....+++.+-..++........+++...
T Consensus 298 ~~~~~~~~~~a~ke~rg~~~nLlsp~lrkttlllw~iwfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~ 377 (528)
T KOG0253|consen 298 ESDLDDSKSSAAKEVRGGTTNLLSPKLRKTTLLLWRIWFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCP 377 (528)
T ss_pred hhchhhhhhccccccccchHhhcChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCC
Confidence 11111 11126777888888887777776554444444444444433211
Q ss_pred CCCchhhHHHhHHHHHHHHHHHHhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcchhhHHHHHHHHH
Q 047115 328 VRKSTSLLMSAVVPDGIGTVSTILPMILADKLGRTVLFLLGGIQILVSQVMIRSIMAAQLGDHGGFNIGYAYLILFLICV 407 (522)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (522)
.+..... .-..+..+..+.|.++.+++.||+|||+.+..+++++++..+++.... ......+..+.
T Consensus 378 ~s~~~dY-rdllitslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~-------------~rn~~tvllf~ 443 (528)
T KOG0253|consen 378 LSVAKDY-RDLLITSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCK-------------TRNAYTVLLFT 443 (528)
T ss_pred ccchhHH-HHHHHHHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhc-------------CcchhHHHHHH
Confidence 1111222 345567888999999999999999999999988888877766655431 12234444555
Q ss_pred HHHhhhccccccccccccccCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHhhccC
Q 047115 408 YKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLVAQTFLAMLCHFKAGVFFCFGGWVAFMTTFVHFFLPE 487 (522)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~ 487 (522)
..++.+.++. +.+.|..|++|+..|+++.|.++..+++++++.|.+. ...+.....+.+++++++++.++.++++--|
T Consensus 444 arafisg~fq-vaYvYtPEVyPTavRatgvGtcSsmaRIggI~~p~iA-~~~e~s~sl~i~vy~~~~ilagIavcffPiE 521 (528)
T KOG0253|consen 444 ARAFISGAFQ-VAYVYTPEVYPTAVRATGVGTCSSMARIGGIFSPVIA-MRAELSTSLPIFVYGALFILAGIAVCFFPIE 521 (528)
T ss_pred HHHHHhchhe-EEEEecCcccchhhhhcchhhhhhHHhhhhhhhhHHH-HHhccceeehHHHHHHHHHHHHHHheeeeec
Confidence 5555555554 5679999999999999999999999999999999887 4444444677888888888888888877779
Q ss_pred CCCCCH
Q 047115 488 TKYMPI 493 (522)
Q Consensus 488 ~~~~~~ 493 (522)
||+|..
T Consensus 522 tkGR~l 527 (528)
T KOG0253|consen 522 TKGRSL 527 (528)
T ss_pred cCCCCC
Confidence 988753
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.5e-29 Score=255.84 Aligned_cols=336 Identities=10% Similarity=-0.000 Sum_probs=237.1
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhhhhHH
Q 047115 58 KFDSQLLAAFTSSLYIAGLIAFLFASKVTRAFGRKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCCYSN 137 (522)
Q Consensus 58 ~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 137 (522)
|++.++.+++.+++.++..++++++|+++||+|||+++. .+.++.++
T Consensus 34 ~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~---------------------------------~~~~~~~~ 80 (377)
T TIGR00890 34 GVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAM---------------------------------LGGILYGL 80 (377)
T ss_pred CCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhH---------------------------------HhHHHHHH
Confidence 789999999999999999999999999999999999999 99999999
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHhhhhhhhccccccccccccccccccccCCcchhHHHHHHHHHHHHHHHHHHHHhhhhc
Q 047115 138 HCSIGGAAFNIYMLILGCVLLGVGIGFTSQSIQRFNQFAYMILLSSNFETTRLSHIDFLLQISICYLILSANLLNYGTQK 217 (522)
Q Consensus 138 ~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~lG~~~~~~~~~~l~~ 217 (522)
+++++++++|++.+++.|++.|++.+..++..... +.+ ++|++|+++.++...+..+|..+++.+...+.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--------~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 151 (377)
T TIGR00890 81 GFTFYAIADSLAALYLTYGLASAGVGIAYGIALNT--------AVK-WFPDKRGLASGIIIGGYGLGSFILSPLITSVIN 151 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHH--------HHH-HcCcccHHHHHHHHHhcchhHhHHHHHHHHHHh
Confidence 99999999999999999999999999888877777 889 777666999999999999998776655554443
Q ss_pred cCCCCchHHHHHhhHHHHHHHHHH-hcccCCChHHHHHhCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHHhhccccchh
Q 047115 218 IKGSWGWRISLAMAAVPASILTIG-SLFLPETPNSIIQRNKDHQKAEEILQIVRNTTDVKAELDDIIRASSKIIHRIYRP 296 (522)
Q Consensus 218 ~~~~~gwr~~f~i~~~~~~~~~~~-~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 296 (522)
..|||+.|.+.++..++..+. .++++|+|+.. +++ +++. ++.+. ...+.++++..+
T Consensus 152 ---~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~----------~~~~~-------~~~~~~~~~~~~ 208 (377)
T TIGR00890 152 ---LEGVPAAFIYMGIIFLLVIVLGAFLIGYPPGQL--IKT-NIEV----------SVKDY-------TVWEMLRTPQFW 208 (377)
T ss_pred ---cccHHHHHHHHHHHHHHHHHHHHHheecCchhc--ccc-Cccc----------chhhh-------hHHHHHcCccHH
Confidence 348999999877766655444 34455543210 000 0000 00000 011333333332
Q ss_pred HHHHHHHHHHhhhccchhhHhcHHHHHHHcCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhhccchHHHHHHHHHHHHHH
Q 047115 297 QLVMAILIPFQQVTRVNVISFNAPVLFMTIKVRKSTSLLMSAVVPDGIGTVSTILPMILADKLGRTVLFLLGGIQILVSQ 376 (522)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~ 376 (522)
...... +...........+.+.+.++.|.+..+.+ .......++.++++++.+++.||++||+.+..+.....++.
T Consensus 209 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~ 284 (377)
T TIGR00890 209 VLYLSF---FLNAVSGLLLIGLYKPYGQSLGLSDGFLV-LAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGM 284 (377)
T ss_pred HHHHHH---HHHhHHHHHHHHHHHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Confidence 222222 11111222233445556677888887777 78888999999999999999999999999888777776666
Q ss_pred HHHHHHHHHhhCCCCCCcchhhHHHHHHHHHHHHhhhccccccccccccccCchhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 047115 377 VMIRSIMAAQLGDHGGFNIGYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLVAQTFL 456 (522)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~ 456 (522)
+.+.... ............+...+.+.. .+....+..|.+|+++|+++.|+.+....++..++|.+.+
T Consensus 285 ~~~~~~~-----------~~~~~~~~~~~~~~g~~~g~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g 352 (377)
T TIGR00890 285 AAMLFIP-----------MLNDVLFLATVALVFFTWGGT-ISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIAS 352 (377)
T ss_pred HHHHHcc-----------cchhHHHHHHHHHHHHHhccc-hhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHH
Confidence 5544321 111222222223333333322 2233456689999999999999999999999999999999
Q ss_pred HHHHhccchhhHHHHHHH
Q 047115 457 AMLCHFKAGVFFCFGGWV 474 (522)
Q Consensus 457 ~~~~~~g~~~~~~~~~~~ 474 (522)
.+.++.++...+...+++
T Consensus 353 ~l~~~~g~~~~f~~~~~~ 370 (377)
T TIGR00890 353 HALTEIGFEYTFIVTGAF 370 (377)
T ss_pred HHHhhhchhhHHHHHHHH
Confidence 999988865544443333
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.4e-29 Score=254.57 Aligned_cols=338 Identities=10% Similarity=0.016 Sum_probs=222.5
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhhhhHH
Q 047115 58 KFDSQLLAAFTSSLYIAGLIAFLFASKVTRAFGRKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCCYSN 137 (522)
Q Consensus 58 ~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 137 (522)
|+|.++.|++.+.+.+++.+++++.|+++||+|||+++. .+......
T Consensus 22 ~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~---------------------------------~~~~~~~~ 68 (368)
T TIGR00903 22 DVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLF---------------------------------GSLATFAA 68 (368)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHH---------------------------------HHHHHHHH
Confidence 789999999999999999999999999999999998766 55554444
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHhhhhhhhccccccccccccccccccccCCcc-hhHHHHHHHHHHHHHHHHHHHHhhhh
Q 047115 138 HCSIGGAAFNIYMLILGCVLLGVGIGFTSQSIQRFNQFAYMILLSSNFETTRL-SHIDFLLQISICYLILSANLLNYGTQ 216 (522)
Q Consensus 138 ~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~-g~~~~~~~~~~~lG~~~~~~~~~~l~ 216 (522)
+.+....++|++.+++.|+++|++.+. .+..... ++| ++|+++ ++++++.+.+..+|.+++++++..+.
T Consensus 69 ~~~~~~~~~~~~~l~~~R~l~G~g~~~-~~~~~~~--------~~~-~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~ 138 (368)
T TIGR00903 69 AAGRLLDPFNYEWLLACQLLAALGQPF-LLNAFAP--------AAS-QIREERRDLVISLLSFAMYLGIIFALAAGLKIY 138 (368)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhHhHH-HHHHHHH--------HHH-HcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 433333347999999999999999985 4555555 789 777777 99999999999999999999999887
Q ss_pred ccCCCCchHHHHHhhHHHHHH-HHHHhcccCCChHHHHHhCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHHhhccccch
Q 047115 217 KIKGSWGWRISLAMAAVPASI-LTIGSLFLPETPNSIIQRNKDHQKAEEILQIVRNTTDVKAELDDIIRASSKIIHRIYR 295 (522)
Q Consensus 217 ~~~~~~gwr~~f~i~~~~~~~-~~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 295 (522)
+. +|||+.|++.+++.++ .++..+++||+|++. ++ ..+.++ .. +..+++++++..
T Consensus 139 ~~---~gWr~~f~~~~~l~~~~~~~~~~~lp~~p~~~---~~-~~~~~~-------------~~----~~~~~ll~~~~~ 194 (368)
T TIGR00903 139 TA---GGLQLLIIPIAAVAAAGIILVLAALPALPFQA---AE-GFGFKD-------------AV----KEFGALAGRKDL 194 (368)
T ss_pred Hc---cchHHHHHHHHHHHHHHHHHHHHHcCCCCCCC---CC-CcchHH-------------HH----HHHHHHHcChhH
Confidence 53 5899999886555444 445566789988641 11 100000 00 011244544332
Q ss_pred hHHHHHHHHHHhhhccchhhHhcHHHHHHHcCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhhccch---HHHHH-HHHH
Q 047115 296 PQLVMAILIPFQQVTRVNVISFNAPVLFMTIKVRKSTSLLMSAVVPDGIGTVSTILPMILADKLGRT---VLFLL-GGIQ 371 (522)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~---~~~~~-~~~~ 371 (522)
+......++.....+.+..|.|.++++.|++.. .+ .......+.+.++ .++++||..|| +.... ....
T Consensus 195 ---~~~~~~~~~~~~~~~~~~~wlp~~L~~~g~s~~-~~-~~~~l~~~~g~~g---~~~~~d~~~r~~~r~~~~~~~~~~ 266 (368)
T TIGR00903 195 ---WIIGAILGFGVALFDNLAIWLEAALRPAGLEDI-AG-DAVALAILAGLIG---VAVIPDRVARAGLRSIYIRAAALL 266 (368)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCChH-HH-HHHHHHHHHHHHH---HHHhhHHhhhhhhHHHHHHHHHHH
Confidence 222233344555566778899999988888764 44 4555555555555 47788887543 32222 2222
Q ss_pred HHHHHHHHHHHHHHhhCCCCCCcchhhHHHHHHHHHHHHhhhccccccccccccccCchhhhhHHHHHHHHHHHHHHHHH
Q 047115 372 ILVSQVMIRSIMAAQLGDHGGFNIGYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLV 451 (522)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~ 451 (522)
..+....+... ...+..+...++...+.. ...+..+.+.+|.+|++.|+++.|+.+..+++++..+
T Consensus 267 ~a~~~~~~~~~-------------~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~ 332 (368)
T TIGR00903 267 IAAFFLALAFE-------------LNRLALFAFIGIAGLLML-PAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVAL 332 (368)
T ss_pred HHHHHHHHHHc-------------cccHHHHHHHHHHHHhhh-hhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHH
Confidence 22222222111 111222222232222222 2223455778899999999999999999999999999
Q ss_pred HHHHHHHHHhcc-chhhHHHHHHHHHHHHHHHhhccC
Q 047115 452 AQTFLAMLCHFK-AGVFFCFGGWVAFMTTFVHFFLPE 487 (522)
Q Consensus 452 ~~~~~~~~~~~g-~~~~~~~~~~~~i~~~~~~~~~~~ 487 (522)
|.+.+.+.. + ...+.+++....+..+.+. ..++
T Consensus 333 ~~~~~~~~~--~~~~~f~~~~~~~~i~~~~~~-~~~~ 366 (368)
T TIGR00903 333 ALAAMLFIS--SAEAYFTFLAILITIAFAIAL-LLPN 366 (368)
T ss_pred HHHHHHHhc--CHHHHHHHHHHHHHHHHHHHH-hCCC
Confidence 999887773 4 3456666666666555543 3344
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=8e-29 Score=254.31 Aligned_cols=360 Identities=13% Similarity=0.093 Sum_probs=242.0
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhhhhHH
Q 047115 58 KFDSQLLAAFTSSLYIAGLIAFLFASKVTRAFGRKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCCYSN 137 (522)
Q Consensus 58 ~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 137 (522)
|+++.+.+++.+++.++..++.++.|+++||+|||+++. .+.++.++
T Consensus 25 g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~---------------------------------~~~~~~~~ 71 (399)
T TIGR00893 25 GLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLA---------------------------------VFIVIWGV 71 (399)
T ss_pred CCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeH---------------------------------HHHHHHHH
Confidence 789999999999999999999999999999999999999 99999999
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHhhhhhhhccccccccccccccccccccCCcc-hhHHHHHHHHHHHHHHHHHHHHhhhh
Q 047115 138 HCSIGGAAFNIYMLILGCVLLGVGIGFTSQSIQRFNQFAYMILLSSNFETTRL-SHIDFLLQISICYLILSANLLNYGTQ 216 (522)
Q Consensus 138 ~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~-g~~~~~~~~~~~lG~~~~~~~~~~l~ 216 (522)
+.++.++++|++.++++|++.|++.+...+....+ +.| +.|+++ ++.+++.+....+|.++++.+++.+.
T Consensus 72 ~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~--------~~~-~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~ 142 (399)
T TIGR00893 72 FTGLQAFAGAYVSLYILRVLLGAAEAPFFPGIILI--------VAS-WFPASERATAVSIFNSAQGLGGIIGGPLVGWIL 142 (399)
T ss_pred HHHHHHHHcCHHHHHHHHHHHHHHHHhhhhHHHHH--------HHH-hCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999 999 888888 99999999999999999999988776
Q ss_pred ccCCCCchHHHHHhhHHHHHHHHH-HhcccCCChHHHHHhCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHHhhccccch
Q 047115 217 KIKGSWGWRISLAMAAVPASILTI-GSLFLPETPNSIIQRNKDHQKAEEILQIVRNTTDVKAELDDIIRASSKIIHRIYR 295 (522)
Q Consensus 217 ~~~~~~gwr~~f~i~~~~~~~~~~-~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 295 (522)
+. .+||+.|.+.++..++..+ ..++.||+|+.. +..++++.+...++.+.+.+.+++.++..+...+.+++
T Consensus 143 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 214 (399)
T TIGR00893 143 IH---FSWQWAFIIEGVLGIIWGVLWLKFIPDPPQKA--KWLTEEEKYIVVGGLLAEQQGKGPSTPKKYQIKELLKD--- 214 (399)
T ss_pred Hh---CCchHHHHHHHHHHHHHHHHhhheecCCCCcc--ccCCHHHHhhcchhhccccccccccCCCccchHHHhcC---
Confidence 44 3799999987766555444 344566665311 11101111111111000000000000000011122322
Q ss_pred hHHHHHHHHHHhhhccchhhHhcHHHHHH-HcCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhhccchHHHHH-HHHHHH
Q 047115 296 PQLVMAILIPFQQVTRVNVISFNAPVLFM-TIKVRKSTSLLMSAVVPDGIGTVSTILPMILADKLGRTVLFLL-GGIQIL 373 (522)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~-~~~~~~ 373 (522)
++.+......+...........+.|.+++ ..|.+..+.+ .......++.+++.++.++++||++||+.... ......
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 293 (399)
T TIGR00893 215 RRVWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAG-FMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAI 293 (399)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhh-HHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHH
Confidence 22333333334444445566677888775 5688888888 88888899999999999999999999862111 111111
Q ss_pred HHHHHHHHHHHHhhCCCCCCcchhhHHHHHHHHHHHHhhhccccccccccccccCchhhhhHHHHHHHHHHHHHHHHHHH
Q 047115 374 VSQVMIRSIMAAQLGDHGGFNIGYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLVAQ 453 (522)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~ 453 (522)
++.+......... + .....+.......+ .+...+..+..+.+.+|.+|++.|+++.|+.+.+..++..++|.
T Consensus 294 ~~~~~~~~~~~~~-~-----~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~ 365 (399)
T TIGR00893 294 IAGLVLSLLMFAT-N-----YVNIPYAALALVAL--GFFGLGAGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPI 365 (399)
T ss_pred HHHHHHHHHHHHh-c-----cchhHHHHHHHHHH--HHhchhhhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhH
Confidence 1111111111000 0 01122222222222 22222245666778899999999999999999999999999999
Q ss_pred HHHHHHHhcc-chhhHHHHHHHHH
Q 047115 454 TFLAMLCHFK-AGVFFCFGGWVAF 476 (522)
Q Consensus 454 ~~~~~~~~~g-~~~~~~~~~~~~i 476 (522)
+.+.+.+..+ +...+.+.+...+
T Consensus 366 i~g~l~~~~g~~~~~~~~~~~~~~ 389 (399)
T TIGR00893 366 VIGAIAATTGSFAGALMVVAALAL 389 (399)
T ss_pred HhhhhccCCCchhHHHHHHHHHHH
Confidence 9999999887 5444433333333
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-28 Score=257.35 Aligned_cols=360 Identities=13% Similarity=0.001 Sum_probs=227.3
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhhhhHH
Q 047115 58 KFDSQLLAAFTSSLYIAGLIAFLFASKVTRAFGRKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCCYSN 137 (522)
Q Consensus 58 ~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 137 (522)
|++.++.+++.+++.+++.++++++|+++||+|||++++ .+.++.++
T Consensus 59 g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~---------------------------------~~~~~~~i 105 (452)
T PRK11273 59 GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLP---------------------------------AGLILAAA 105 (452)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHH---------------------------------HHHHHHHH
Confidence 679999999999999999999999999999999999999 99999999
Q ss_pred HHHHHhhhh----hhHHHHHHHHHHHhhhhhhhccccccccccccccccccccCCcc-hhHHHHHHHHHHHHH-HHHHHH
Q 047115 138 HCSIGGAAF----NIYMLILGCVLLGVGIGFTSQSIQRFNQFAYMILLSSNFETTRL-SHIDFLLQISICYLI-LSANLL 211 (522)
Q Consensus 138 ~~~~~~~a~----~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~-g~~~~~~~~~~~lG~-~~~~~~ 211 (522)
+.+++++++ +++.+++.|++.|++.|...+..... +.+ ++|+++ ++++++++.+..+|. +.++++
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~--------~~~-~~~~~~r~~~~~~~~~~~~~g~~~~~~l~ 176 (452)
T PRK11273 106 VMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRT--------MVH-WWSQKERGGIVSVWNCAHNVGGGLPPLLF 176 (452)
T ss_pred HHHHHHhhhcccccHHHHHHHHHHHHHHHhccchHHHHH--------HHH-hCChHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 988887753 78888999999999999888877777 899 888887 999999999999886 445554
Q ss_pred HhhhhccCCCCchHHHHHhhHHHHHH-HHHHhcccCCChHHHHHhCCCHHHHHHHHHHH-cCCcchHHHHHHHHHHHHhh
Q 047115 212 NYGTQKIKGSWGWRISLAMAAVPASI-LTIGSLFLPETPNSIIQRNKDHQKAEEILQIV-RNTTDVKAELDDIIRASSKI 289 (522)
Q Consensus 212 ~~~l~~~~~~~gwr~~f~i~~~~~~~-~~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l 289 (522)
+..+... .+||+.|++.+++.++ .++..+++||+|+.... .+ .++.++..++. ..+++.+.+.++.. .+..
T Consensus 177 ~~~~~~~---~gw~~~f~i~~~~~~~~~~l~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 249 (452)
T PRK11273 177 LLGMAWF---NDWHAALYMPAFAAILVALFAFAMMRDTPQSCGL-PP-IEEYKNDYPDDYNEKHEQELTAKQIF--MQYV 249 (452)
T ss_pred HHHHHHh---ccHHHHHHHHHHHHHHHHHHHHHHccCCHhhcCC-CC-hhhhhhccccccccccCCCccHHHHH--HHHH
Confidence 4333322 2899999987665555 44555677888753110 11 11111000000 00000000011100 0012
Q ss_pred ccccchhHHHHHHHHHHhhhccchhhHhcHHHHHHH-cCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhhc--cchHHHH
Q 047115 290 IHRIYRPQLVMAILIPFQQVTRVNVISFNAPVLFMT-IKVRKSTSLLMSAVVPDGIGTVSTILPMILADKL--GRTVLFL 366 (522)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~--g~~~~~~ 366 (522)
+++ +..+...+..+......+....|.|.++++ .|++..+.+ .......++.+++.++.|+++||+ +||+...
T Consensus 250 ~~~---~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~-~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~ 325 (452)
T PRK11273 250 LPN---KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSS-WAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATG 325 (452)
T ss_pred HcC---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHccCCcchHH
Confidence 222 222222222233333334566789999975 689888887 777888899999999999999999 4444322
Q ss_pred H-HHHHHHHHHHHHHHHHHHhhCCCCCCcchhhHHHHHHHHHHHHhhhccccccccccccccCchhhhhHHHHHHHHHHH
Q 047115 367 L-GGIQILVSQVMIRSIMAAQLGDHGGFNIGYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDL 445 (522)
Q Consensus 367 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ 445 (522)
. ...+..++.+.+... .....+...+.....+.... +.......+..|.+|++.||++.|+.+....
T Consensus 326 ~~~~~l~~~~~~~~~~~-----------~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 393 (452)
T PRK11273 326 VFFMTLVTIATIVYWLN-----------PAGNPTVDMACMIVIGFLIY-GPVMLIGLHALELAPKKAAGTAAGFTGLFGY 393 (452)
T ss_pred HHHHHHHHHHHHHHHHh-----------cccChHHHHHHHHHHHHHHH-hHHHHHHHHHHHHcChhhhhhHHHHHHHHHH
Confidence 2 112222222221111 01111122222222212111 1111222445699999999999999999988
Q ss_pred HHHHH-HHHHHHHHHHhccchh-hHHHHHHHHHHHHHHH
Q 047115 446 LFTFL-VAQTFLAMLCHFKAGV-FFCFGGWVAFMTTFVH 482 (522)
Q Consensus 446 ~~~~~-~~~~~~~~~~~~g~~~-~~~~~~~~~i~~~~~~ 482 (522)
+++.+ +|.+.+.+.|+.++.. +.+.++++.+..+...
T Consensus 394 ~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~ 432 (452)
T PRK11273 394 LGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLI 432 (452)
T ss_pred HHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 88765 7999999999988644 4444444444433333
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.2e-28 Score=248.62 Aligned_cols=373 Identities=18% Similarity=0.193 Sum_probs=262.7
Q ss_pred HHHHHHHHHHHHHhhhhhcchhhccccccHHHHHHhhhhhhhcccCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 047115 4 FIVLSCIVAATSGLIFGYDIGVSGGVTLMEPFLKKCFLEVYKKMKEDPKISNYGKFDSQLLAAFTSSLYIAGLIAFLFAS 83 (522)
Q Consensus 4 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g 83 (522)
+.+.....+.+..+..+++....+... |.+.+++ |++..+.+++.+...++..++.++.|
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~g 73 (398)
T TIGR00895 14 YQWRAIILSFLIMLMDGYDLAAMGFAA--PAISAEW------------------GLDPVQLGFLFSAGLIGMAFGALFFG 73 (398)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhH--HHHhhcc------------------CCCHHHHHHHHHHHHHHHHHHHHHhH
Confidence 456666667777788888887766543 5555544 77899999999999999999999999
Q ss_pred HhhhhhccccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhhhhHHHHHHHhhhhhhHHHHHHHHHHHhhhh
Q 047115 84 KVTRAFGRKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCCYSNHCSIGGAAFNIYMLILGCVLLGVGIG 163 (522)
Q Consensus 84 ~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~l~~~r~l~G~~~g 163 (522)
+++||+|||+.+. .+.++.+++.++..++++++.+++.|++.|++.+
T Consensus 74 ~l~d~~g~~~~~~---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 120 (398)
T TIGR00895 74 PLADRIGRKRVLL---------------------------------WSILLFSVFTLLCALATNVTQLLILRFLAGLGLG 120 (398)
T ss_pred HHHHHhhhHHHHH---------------------------------HHHHHHHHHHHHHHHccchHHHHHHHHHHhcccc
Confidence 9999999999999 9999999999999999999999999999999999
Q ss_pred hhhccccccccccccccccccccCCcc-hhHHHHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHhhHH-HHHHHHHH
Q 047115 164 FTSQSIQRFNQFAYMILLSSNFETTRL-SHIDFLLQISICYLILSANLLNYGTQKIKGSWGWRISLAMAAV-PASILTIG 241 (522)
Q Consensus 164 ~~~~~~~~~~~~~~~~~i~~~~~~~~~-g~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~gwr~~f~i~~~-~~~~~~~~ 241 (522)
...+....+ +.| ++|+++ +++.++.+.+..+|..+++.+++.+.+. .|||+.|++.++ ..+...+.
T Consensus 121 ~~~~~~~~~--------~~~-~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~---~g~~~~~~~~~~~~~~~~~~~ 188 (398)
T TIGR00895 121 GLMPNLNAL--------VSE-YAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPV---FGWRSLFYVGGIAPLLLLLLL 188 (398)
T ss_pred cchhhHHHH--------HHH-HcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhc---ccceeehhhhhhHHHHHHHHH
Confidence 999999999 999 888887 9999999999999999999998877644 489999988754 44445555
Q ss_pred hcccCCChHHHHHhCCCHHHHHHHHHHHcCC----c-----chHHHHHHHHHHHHhhccccchhHHHHHHHHHHhhhccc
Q 047115 242 SLFLPETPNSIIQRNKDHQKAEEILQIVRNT----T-----DVKAELDDIIRASSKIIHRIYRPQLVMAILIPFQQVTRV 312 (522)
Q Consensus 242 ~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~----~-----~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 312 (522)
..++||++++..++ + .++.++..++.... + +.+.+.+..++..+.+++++..+.........+......
T Consensus 189 ~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (398)
T TIGR00895 189 MRFLPESIDFLVSK-R-PETVRRIVNAIAPQMQAEAQSALPEQKATQGTKRSVFKALFQGKTARITVLLWLLYFMLLVGV 266 (398)
T ss_pred HHhCCCCChHHHhc-C-HHHHHHHHHHHHHhccccccccccccccccchhhHHHHHHhcchhHHHHHHHHHHHHHHHHHH
Confidence 66789988764433 2 33322222221110 0 000000011111112333333333333333333333444
Q ss_pred hhhHhcHHHHHHHcCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC
Q 047115 313 NVISFNAPVLFMTIKVRKSTSLLMSAVVPDGIGTVSTILPMILADKLGRTVLFLLGGIQILVSQVMIRSIMAAQLGDHGG 392 (522)
Q Consensus 313 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (522)
.....+.|.+.++.|++..+.+ .......++.+++.++.+++.||+++|+.... .....+...++....
T Consensus 267 ~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~--------- 335 (398)
T TIGR00895 267 YFLTNWLPKLMVELGFSLSLAA-TGGALFNFGGVIGSIIFGWLADRLGPRVTALL-LLLGAVFAVLVGSTL--------- 335 (398)
T ss_pred HHHHHHHHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHhhcchHHHHHH-HHHHHHHHHHHHHHh---------
Confidence 5566778877788899988888 88888999999999999999999999854433 333333222222211
Q ss_pred CcchhhHHHHHHHHHHHHhhhccccccccccccccCchhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 047115 393 FNIGYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLVAQTFLAM 458 (522)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~ 458 (522)
...+......++.+.+.+.. .+....+..|.+|++.|+++.|+.+.+..++..++|.+.|.+
T Consensus 336 ---~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l 397 (398)
T TIGR00895 336 ---FSPTLLLLLGAIAGFFVNGG-QSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL 397 (398)
T ss_pred ---hCHHHHHHHHHHHHHHHHHH-HHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence 11222333334444444333 334557778999999999999999999999999999988764
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.3e-28 Score=250.23 Aligned_cols=376 Identities=9% Similarity=-0.038 Sum_probs=259.0
Q ss_pred HHHHHHHHHHHHHhhhhhcchhhccccccHHHHHHhhhhhhhcccCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 047115 4 FIVLSCIVAATSGLIFGYDIGVSGGVTLMEPFLKKCFLEVYKKMKEDPKISNYGKFDSQLLAAFTSSLYIAGLIAFLFAS 83 (522)
Q Consensus 4 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g 83 (522)
.++.+...+.++.++.+++....+... |++.+++ |+|.++.+++.+.+.+++.+++++.|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~i~~~~------------------~~s~~~~g~~~s~~~~~~~i~~~~~g 63 (394)
T PRK03699 4 NRIKLTWISFLSYALTGALVIVTGMVM--GPIAEYF------------------NLPVSSMSNTFTFLNAGILISIFLNA 63 (394)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhh--HHHHHHh------------------CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666677788899999988877665 7777766 78999999999999999999999999
Q ss_pred HhhhhhccccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhhhhHHHHHHHhhhhhhHHHHHHHHHHHhhhh
Q 047115 84 KVTRAFGRKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCCYSNHCSIGGAAFNIYMLILGCVLLGVGIG 163 (522)
Q Consensus 84 ~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~l~~~r~l~G~~~g 163 (522)
+++||+|||+++. .+.++.+++.++++++++++.+++.|+++|++.|
T Consensus 64 ~l~dr~g~r~~~~---------------------------------~~~~~~~i~~~l~~~~~~~~~~~~~~~l~G~~~g 110 (394)
T PRK03699 64 WLMEIIPLKRQLI---------------------------------FGFALMILAVAGLMFSHSLALFSIAMFVLGVVSG 110 (394)
T ss_pred HHHHHhhHHHHHH---------------------------------HHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhhH
Confidence 9999999999999 9999999999999999999999999999999999
Q ss_pred hhhccccccccccccccccccccCCcc-hhHHHHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHhhHHHHHHHHHHh
Q 047115 164 FTSQSIQRFNQFAYMILLSSNFETTRL-SHIDFLLQISICYLILSANLLNYGTQKIKGSWGWRISLAMAAVPASILTIGS 242 (522)
Q Consensus 164 ~~~~~~~~~~~~~~~~~i~~~~~~~~~-g~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~gwr~~f~i~~~~~~~~~~~~ 242 (522)
...+....+ +.| ++|+++ ++..+..+....+|..++|.+...+... ..|||+.|.+.++..++..+..
T Consensus 111 ~~~~~~~~~--------i~~-~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~--~~gw~~~f~~~~~~~~~~~~~~ 179 (394)
T PRK03699 111 ITMSIGTFL--------ITH-VYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLAR--SIEWYWVYACIGLVYVAIFILT 179 (394)
T ss_pred hhccchhHH--------hhh-hcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHHHHHH
Confidence 988888888 999 888877 9999998888899988888887665432 2489999988766655544333
Q ss_pred cccCCChHHHHHhCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHHhhccccchhHHHHHHHHHHhhhccchhhHhcHHHH
Q 047115 243 LFLPETPNSIIQRNKDHQKAEEILQIVRNTTDVKAELDDIIRASSKIIHRIYRPQLVMAILIPFQQVTRVNVISFNAPVL 322 (522)
Q Consensus 243 ~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (522)
++ .+.|+. ++++ .++ + . +..++...+..+......+........+..|.|.+
T Consensus 180 ~~-~~~p~~--~~~~-~~~----------~--~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 231 (394)
T PRK03699 180 LF-SEFPAL--GKHA-PKA----------D--K------------PVAKEKWGIGVLFLAIAALLYILAQLTFISWVPEY 231 (394)
T ss_pred Hh-cCCccc--cccC-ccc----------c--C------------ccccccCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32 222210 0111 000 0 0 00011112222222222233333344567889998
Q ss_pred HH-HcCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcchhhHHH
Q 047115 323 FM-TIKVRKSTSLLMSAVVPDGIGTVSTILPMILADKLGRTVLFLLGGIQILVSQVMIRSIMAAQLGDHGGFNIGYAYLI 401 (522)
Q Consensus 323 ~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (522)
++ +.|++..+.+ ...+...++..+++++.++++||+++|+.+........+...++... ++ .+..
T Consensus 232 l~~~~g~s~~~~~-~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~------------~~-~~~~ 297 (394)
T PRK03699 232 AQKKFGMSLEDAG-NLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNT------------DD-PSHL 297 (394)
T ss_pred HHHHcCCChHHhh-HHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHc------------CC-chHH
Confidence 84 5699999988 88888889999999999999999999998876655544433332211 11 1122
Q ss_pred HHHHHHHHHhhhccccccccccccccCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHH
Q 047115 402 LFLICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLVAQTFLAMLCHFKAGVFFCFGGWVAFMTTFV 481 (522)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~ 481 (522)
.+..+..+.+.+. ..+.......|..| +.+++..+.......++..++|.+.+.+.++.++...+.....+.+.+...
T Consensus 298 ~~~~~~~G~~~~~-~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~ 375 (394)
T PRK03699 298 LYAILGLGFFSSA-IYTTIITLGSQQTK-VASPKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFVM 375 (394)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHcc-CCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHHH
Confidence 2222333332222 22233344455555 345777888888999999999999999999888544433333334444344
Q ss_pred HhhccC
Q 047115 482 HFFLPE 487 (522)
Q Consensus 482 ~~~~~~ 487 (522)
+..+++
T Consensus 376 ~~~~~~ 381 (394)
T PRK03699 376 CILLGF 381 (394)
T ss_pred HHHHHH
Confidence 444443
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.9e-28 Score=252.36 Aligned_cols=357 Identities=10% Similarity=-0.013 Sum_probs=255.6
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhhhhHH
Q 047115 58 KFDSQLLAAFTSSLYIAGLIAFLFASKVTRAFGRKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCCYSN 137 (522)
Q Consensus 58 ~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 137 (522)
+.++.+.|++.+.+.++..+++++.|+++||+|||+++. .+.++.++
T Consensus 48 ~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~---------------------------------~~~~~~~~ 94 (417)
T PRK10489 48 TGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLIL---------------------------------LARGTCGL 94 (417)
T ss_pred HCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEE---------------------------------ehHHHHHH
Confidence 348889999999999999999999999999999999999 87777776
Q ss_pred HHHHHhh-----hhhhHHHHHHHHHHHhhhhhhhccccccccccccccccccccCCcc-hhHHHHHHHHHHHHHHHHHHH
Q 047115 138 HCSIGGA-----AFNIYMLILGCVLLGVGIGFTSQSIQRFNQFAYMILLSSNFETTRL-SHIDFLLQISICYLILSANLL 211 (522)
Q Consensus 138 ~~~~~~~-----a~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~-g~~~~~~~~~~~lG~~~~~~~ 211 (522)
+.+..+. .++++.+++.|+++|++.+...+....+ +.| +.|+++ +++.++.+.+..+|..+|+.+
T Consensus 95 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~--------~~~-~~~~~~~~~~~~~~~~~~~~g~~~g~~l 165 (417)
T PRK10489 95 GFIGLALNAFLPEPSLLAIYLLGLWDGFFGSLGVTALLAA--------TPA-LVGRENLMQAGAITMLTVRLGSVISPAL 165 (417)
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhhh--------hhh-ccCHHHHHHHHHHHHHHHhHHHHhHHHH
Confidence 6655432 5678899999999999999888888888 999 888888 999999999999999999999
Q ss_pred HhhhhccCCCCchHHHHHhhHHHHHHHHHHhcccCCChHHHHHhCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHHhhcc
Q 047115 212 NYGTQKIKGSWGWRISLAMAAVPASILTIGSLFLPETPNSIIQRNKDHQKAEEILQIVRNTTDVKAELDDIIRASSKIIH 291 (522)
Q Consensus 212 ~~~l~~~~~~~gwr~~f~i~~~~~~~~~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 291 (522)
++.+.+.. +||+.|.+.++..++..+..+.+||+++. +.+ +++.. ++..+..+..++
T Consensus 166 ~g~l~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~-~~~~~----------------~~~~~~~~~~~~ 222 (417)
T PRK10489 166 GGLLIAAG---GVAWNYGLAAAGTFITLLPLLRLPALPPP---PQP-REHPL----------------RSLLAGFRFLLA 222 (417)
T ss_pred HHHHHHHH---hhHHHHHHHHHHHHHHHHHHHhCCCCCCC---Ccc-cccch----------------HHHHHHHHHHHc
Confidence 98877543 79999988777766666666677775431 111 00000 011111112333
Q ss_pred ccchhHHHHHHHHHHhhhccchhhHhcHHHHHHH-cCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhhccchHHHHHHHH
Q 047115 292 RIYRPQLVMAILIPFQQVTRVNVISFNAPVLFMT-IKVRKSTSLLMSAVVPDGIGTVSTILPMILADKLGRTVLFLLGGI 370 (522)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~ 370 (522)
++..+...+..+... . ......+.|.+.++ .|.+....+ +......++.+++.++.+++.||.++++.+..+..
T Consensus 223 ~~~~~~~~~~~~~~~---~-~~~~~~~~p~~~~~~~g~~~~~~g-~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~ 297 (417)
T PRK10489 223 SPVVGGIALLGGLLT---M-ASAVRVLYPALADEVWQMGAAQIG-LLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTL 297 (417)
T ss_pred ChHHHHHHHHHHHHH---H-HHhHHHhhHHHHHhccCCChhHhH-HHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHH
Confidence 322222222111111 1 22345667888876 799988888 88888899999999999999999877777776666
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCCcchhhHHHHHHHHHHHHhhhccccccccccccccCchhhhhHHHHHHHHHHHHHHHH
Q 047115 371 QILVSQVMIRSIMAAQLGDHGGFNIGYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFL 450 (522)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~ 450 (522)
+..++.+.+... +..+...+..++++.+.+. ..+...++..|..|++.|+++.|+.+....++..+
T Consensus 298 ~~~~~~~~~~~~-------------~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~ 363 (417)
T PRK10489 298 GSFLAVGLFGLM-------------PMWILAVLCLALFGYLSAI-SSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAI 363 (417)
T ss_pred HHHHHHHHHHcc-------------chHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhH
Confidence 655554443321 1222223333333333322 22344566689999999999999999999999999
Q ss_pred HHHHHHHHHHhccc-hhhHHHHHHHHHHHHHHHhhccCCCCCCHHHHHH
Q 047115 451 VAQTFLAMLCHFKA-GVFFCFGGWVAFMTTFVHFFLPETKYMPIEFMDK 498 (522)
Q Consensus 451 ~~~~~~~~~~~~g~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 498 (522)
++.+.|.+.+..+. ..+...+++..+.+++.+..++++|+++.||+++
T Consensus 364 g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (417)
T PRK10489 364 GAALLGGLGAMMTPVASASASGFGLLIIGVLLLLVLGELRRFRQTPPEV 412 (417)
T ss_pred HHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhcccccccccccccC
Confidence 99999999998884 5566666677777777778888888777666544
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.4e-27 Score=245.56 Aligned_cols=365 Identities=13% Similarity=0.078 Sum_probs=244.7
Q ss_pred HHHHHhhhhhcchhhccccccHHHHHHhhhhhhhcccCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 047115 12 AATSGLIFGYDIGVSGGVTLMEPFLKKCFLEVYKKMKEDPKISNYGKFDSQLLAAFTSSLYIAGLIAFLFASKVTRAFGR 91 (522)
Q Consensus 12 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Gr 91 (522)
..++.++...+.+...+.. |.+.++. +|+|+.+.|++.+++.+++.+++++.|+++||+||
T Consensus 20 l~~~~~~~~~~~~~~~~~l--~~~i~~~-----------------~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~ 80 (399)
T PRK05122 20 IVMFTFISYLTIGLPLAVL--PGYVHDQ-----------------LGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGP 80 (399)
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHh-----------------cCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCC
Confidence 4445555566666665554 5543322 27799999999999999999999999999999999
Q ss_pred ccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhhhhHHHHHHHhhh--------hhhHHHHHHHHHHHhhhh
Q 047115 92 KASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCCYSNHCSIGGAA--------FNIYMLILGCVLLGVGIG 163 (522)
Q Consensus 92 k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a--------~~~~~l~~~r~l~G~~~g 163 (522)
|++++ .+.++++++.+.+.++ .+++.+++.|+++|++.+
T Consensus 81 r~~l~---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~ 127 (399)
T PRK05122 81 KKAVV---------------------------------FGLCGCALSGLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGES 127 (399)
T ss_pred cchHH---------------------------------HHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHhhHH
Confidence 99999 8888887776665543 256789999999999999
Q ss_pred hhhccccccccccccccccccccCCcc-hhHHHHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHhhHHHHHHHHHHh
Q 047115 164 FTSQSIQRFNQFAYMILLSSNFETTRL-SHIDFLLQISICYLILSANLLNYGTQKIKGSWGWRISLAMAAVPASILTIGS 242 (522)
Q Consensus 164 ~~~~~~~~~~~~~~~~~i~~~~~~~~~-g~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~gwr~~f~i~~~~~~~~~~~~ 242 (522)
...+....+ +.| +.|+++ ++++++.+.+..+|.++++.++..+.+. .|||+.+.+..+..++..+..
T Consensus 128 ~~~~~~~~~--------~~~-~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~---~g~~~~~~~~~~~~~~~~~~~ 195 (399)
T PRK05122 128 LAGTGSILW--------GIG-RVGALHTGRVISWNGIATYGALAIGAPLGVLLYHW---GGLAGLGLLIMLLALLGLLLA 195 (399)
T ss_pred hhcchHHHH--------HHh-hcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHc---ccHHHHHHHHHHHHHHHHHHH
Confidence 998888888 899 788787 9999999999999999999998887754 489998887666555444333
Q ss_pred cccCCChHHHHHhCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHHhhccccchhHHHHHHHHHHhhhccchhhHhcHHHH
Q 047115 243 LFLPETPNSIIQRNKDHQKAEEILQIVRNTTDVKAELDDIIRASSKIIHRIYRPQLVMAILIPFQQVTRVNVISFNAPVL 322 (522)
Q Consensus 243 ~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (522)
...|+++. ++++ +.+ .+ +.+++ .+.. .....+. .........+.|.+
T Consensus 196 ~~~~~~~~---~~~~-~~~-----------------~~-------~~~~~-~~~~-~~~~~~~---~~~~~~~~~~~~~~ 242 (399)
T PRK05122 196 RPRPAVPP---VKGE-RLP-----------------FR-------RVLGR-VWPY-GMGLALA---SIGFGTIATFITLY 242 (399)
T ss_pred hcCCCCCC---CCcc-chh-----------------HH-------HHHHH-HHHH-HHHHHHH---HHHHHHHHHHHHHH
Confidence 33343321 0000 000 00 01111 0111 1111111 11122344566777
Q ss_pred HHHcCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcchhhHHHH
Q 047115 323 FMTIKVRKSTSLLMSAVVPDGIGTVSTILPMILADKLGRTVLFLLGGIQILVSQVMIRSIMAAQLGDHGGFNIGYAYLIL 402 (522)
Q Consensus 323 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (522)
+.+.|++ ..+ .......++.+++.+..+++.||+++|+.+..+.....++...+... ++.+...
T Consensus 243 ~~~~~~~--~~~-~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~ 306 (399)
T PRK05122 243 YAARGWD--GAA-LALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLA-------------PSPWMAL 306 (399)
T ss_pred HHHcccc--cch-HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHh-------------ccHHHHH
Confidence 7666663 334 55667788889999999999999999998887777666665544432 1122333
Q ss_pred HHHHHHHHhhhccccccccccccccCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHH
Q 047115 403 FLICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLVAQTFLAMLCHFKAGVFFCFGGWVAFMTTFVH 482 (522)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~ 482 (522)
+...+.+.+.+... +.......|..|++.|+++.|+.+....++..+++.+.+.+.++.++...+...+.+.+.+++..
T Consensus 307 ~~~~l~G~~~~~~~-~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~ 385 (399)
T PRK05122 307 IGAALTGFGFSLVF-PALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALT 385 (399)
T ss_pred HHHHHHHHhHHHHH-HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHH
Confidence 33344444443322 22234446888999999999999999999999999999999998886554444444444444444
Q ss_pred hhccCCCC
Q 047115 483 FFLPETKY 490 (522)
Q Consensus 483 ~~~~~~~~ 490 (522)
.+++++++
T Consensus 386 ~~~~~~~~ 393 (399)
T PRK05122 386 WLLYRRAP 393 (399)
T ss_pred HHhccccc
Confidence 44554433
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-27 Score=246.23 Aligned_cols=358 Identities=12% Similarity=0.000 Sum_probs=246.0
Q ss_pred HHHHHhhhhhcchhhccccccHHHHHHhhhhhhhcccCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 047115 12 AATSGLIFGYDIGVSGGVTLMEPFLKKCFLEVYKKMKEDPKISNYGKFDSQLLAAFTSSLYIAGLIAFLFASKVTRAFGR 91 (522)
Q Consensus 12 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Gr 91 (522)
...+.+..++.....++.. |.+.+++ |++.++.+++.+.+.+++.++++++|+++||+||
T Consensus 8 ~~~~~~~~~~~~~~~~~~l--~~~~~~~------------------g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~ 67 (382)
T PRK10091 8 LALGTFGLGMAEFGIMGVL--TELAHDV------------------GISIPAAGHMISYYALGVVVGAPIIALFSSRYSL 67 (382)
T ss_pred HHHHHHHHHhhHHHHHhCh--HHHHHHc------------------CCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCcc
Confidence 3445566666666666654 7777666 7799999999999999999999999999999999
Q ss_pred ccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhhhhHHHHHHHhhhhhhHHHHHHHHHHHhhhhhhhccccc
Q 047115 92 KASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCCYSNHCSIGGAAFNIYMLILGCVLLGVGIGFTSQSIQR 171 (522)
Q Consensus 92 k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~ 171 (522)
|+++. .+.++.+++.+++++++|++.+++.|+++|++.|...+....
T Consensus 68 r~~~~---------------------------------~~~~~~~~~~~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~ 114 (382)
T PRK10091 68 KHILL---------------------------------FLVALCVIGNAMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAI 114 (382)
T ss_pred HHHHH---------------------------------HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 99999 999999999999999999999999999999999988888878
Q ss_pred cccccccccccccccCCcc-hhHHHHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHhhHHHHHHHHH-HhcccCCCh
Q 047115 172 FNQFAYMILLSSNFETTRL-SHIDFLLQISICYLILSANLLNYGTQKIKGSWGWRISLAMAAVPASILTI-GSLFLPETP 249 (522)
Q Consensus 172 ~~~~~~~~~i~~~~~~~~~-g~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~gwr~~f~i~~~~~~~~~~-~~~~lpesp 249 (522)
+ +.| +.++++ ++++++...+..+|..+++.+++.+.+. .|||+.|.+.++..++..+ ...++||.+
T Consensus 115 ~--------~~~-~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~---~gwr~~f~~~~~~~~~~~~~~~~~lp~~~ 182 (382)
T PRK10091 115 V--------LSK-IIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQE---FSWRYTFLLIAVFNIAVLASIYFWVPDIR 182 (382)
T ss_pred H--------HHH-hCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhh---ccHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 8 899 888888 9999999999999999999998877643 4899999987776555433 345678754
Q ss_pred HHHHHhCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHHhhccccchhHHHHHHHHHHhhhccchhhHhcHHHHH-HHcCC
Q 047115 250 NSIIQRNKDHQKAEEILQIVRNTTDVKAELDDIIRASSKIIHRIYRPQLVMAILIPFQQVTRVNVISFNAPVLF-MTIKV 328 (522)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~ 328 (522)
+ +.+ .+ .++.. +.++++. .+......+....+......|.+.++ +..|+
T Consensus 183 ~----~~~-~~-~~~~~---------------------~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 232 (382)
T PRK10091 183 D----EAK-GG-LREQF---------------------HFLRSPA---PWLIFAATMFGNAGVFAWFSYIKPYMMFISGF 232 (382)
T ss_pred c----ccc-cC-HHHHH---------------------HHhcChH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 2 111 10 00000 1112211 11111111221222222333445455 45799
Q ss_pred CCchhhHHHhHHHHHHHHHHHHhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcchhhHHHHHHHHHH
Q 047115 329 RKSTSLLMSAVVPDGIGTVSTILPMILADKLGRTVLFLLGGIQILVSQVMIRSIMAAQLGDHGGFNIGYAYLILFLICVY 408 (522)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (522)
++.+.+ .......++.++++++.+++.||+++|+.+..+..+..++.+++.... +..+......++.
T Consensus 233 s~~~~~-~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~------------~~~~~~~~~~~~~ 299 (382)
T PRK10091 233 SETSMT-FIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFG------------GMKTASLIFAFIC 299 (382)
T ss_pred CHHHHH-HHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHH------------hhHHHHHHHHHHH
Confidence 998888 888899999999999999999999999988887776666654443321 1122222222333
Q ss_pred HHhhhccccccccccccccCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cchhhHHHHHHHHHHHH
Q 047115 409 KAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLVAQTFLAMLCHF-KAGVFFCFGGWVAFMTT 479 (522)
Q Consensus 409 ~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~i~~~ 479 (522)
..+......+.......+..|++.++.+ ..+....++..++|.+.|.+.|+. ++...+...++..+..+
T Consensus 300 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~ 369 (382)
T PRK10091 300 CAGLFALSAPLQILLLQNAKGGELLGAA--GGQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAM 369 (382)
T ss_pred HHHHHhhhHHHHHHHHHhCCcchHHHHH--HHHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHH
Confidence 3332222222222333455555555554 346678899999999999999964 45444444333333333
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-27 Score=254.94 Aligned_cols=376 Identities=9% Similarity=-0.033 Sum_probs=267.7
Q ss_pred HHHHHHHHHHHHHhhhhhcchhhccccccHHHHHHhhhhhhhcccCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 047115 4 FIVLSCIVAATSGLIFGYDIGVSGGVTLMEPFLKKCFLEVYKKMKEDPKISNYGKFDSQLLAAFTSSLYIAGLIAFLFAS 83 (522)
Q Consensus 4 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g 83 (522)
+.|......+++.++...|.++++... |++.+++ |.+.++.+|+.+.+.++..++++++|
T Consensus 3 ~~~~~~~~~~~~~~~~~ld~tiv~~a~--p~i~~~l------------------~~s~~~~~~~~~~~~l~~~~~~~~~G 62 (495)
T PRK14995 3 RQWLTLVIIVLVYIPVAIDATVLHVAA--PTLSMTL------------------GASGNELLWIIDIYSLVMAGMVLPMG 62 (495)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHh------------------CCCHhHHHHHHHHHHHHHHHHHHHHH
Confidence 457788889999999999999999775 7777776 67889999999999999999999999
Q ss_pred HhhhhhccccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhhhhHHHHHHHhhhhhhHHHHHHHHHHHhhhh
Q 047115 84 KVTRAFGRKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCCYSNHCSIGGAAFNIYMLILGCVLLGVGIG 163 (522)
Q Consensus 84 ~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~l~~~r~l~G~~~g 163 (522)
+++||+|||++++ .+.++++++++++++++|++.++++|+++|+|.+
T Consensus 63 ~l~D~~Grk~~l~---------------------------------~~~~~~~~~~~~~~~a~~~~~li~~r~l~G~g~~ 109 (495)
T PRK14995 63 ALGDRIGFKRLLM---------------------------------LGGTLFGLASLAAAFSPTASWLIATRALLAIGAA 109 (495)
T ss_pred HHHHHhccHHHHH---------------------------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 9999999999999 9999999999999999999999999999999999
Q ss_pred hhhccccccccccccccccccccCCcc-hhHHHHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHhhHHHHHHH-HHH
Q 047115 164 FTSQSIQRFNQFAYMILLSSNFETTRL-SHIDFLLQISICYLILSANLLNYGTQKIKGSWGWRISLAMAAVPASIL-TIG 241 (522)
Q Consensus 164 ~~~~~~~~~~~~~~~~~i~~~~~~~~~-g~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~gwr~~f~i~~~~~~~~-~~~ 241 (522)
...+..... +.+++.|+++ ++++++......+|..+||.+++.+.+.. |||+.|++.....++. .+.
T Consensus 110 ~~~~~~~~~--------l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~---gwr~~f~i~~~~~~~~~~l~ 178 (495)
T PRK14995 110 MIVPATLAG--------IRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHF---YWGSVFLINVPIVLVVMGLT 178 (495)
T ss_pred HHHHHHHHH--------HHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC---ChHHHHHHHHHHHHHHHHHH
Confidence 988877776 7662446666 99999999999999999999999998554 8999999876655543 344
Q ss_pred hcccCCChHHHHHhCCCHHHHHHH------------HHHHcCCc-chHHH---------------HHHHHHHH----Hhh
Q 047115 242 SLFLPETPNSIIQRNKDHQKAEEI------------LQIVRNTT-DVKAE---------------LDDIIRAS----SKI 289 (522)
Q Consensus 242 ~~~lpesp~~~~~~~~~~~~~~~~------------~~~~~~~~-~~~~~---------------~~~~~~~~----~~l 289 (522)
.+++||+|+. ++++ .+..... .++..... +...- ..+.+... .++
T Consensus 179 ~~~l~~~~~~--~~~~-~d~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~f~~~e~~~~~p~~~~~l 255 (495)
T PRK14995 179 ARYVPRQAGR--RDQP-LNLGHALMLIVAILLLVYSAKTALKGFLSLWVTSLTLLTGALLLGLFIRTQLAASRPMIDMRL 255 (495)
T ss_pred HHhCCCCCCC--CCCC-CChHhHHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCcCHHH
Confidence 4567776531 1111 1111100 00000000 00000 00000000 022
Q ss_pred ccccchhHHHHHHHHHHhhhccchhhHhcHHHHHHH-cCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhhccchHHHHHH
Q 047115 290 IHRIYRPQLVMAILIPFQQVTRVNVISFNAPVLFMT-IKVRKSTSLLMSAVVPDGIGTVSTILPMILADKLGRTVLFLLG 368 (522)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~ 368 (522)
++++. ........+...........+.|.+++. .|+++.+++ ....+..++..++.++.|++.||+|+|+.+..+
T Consensus 256 f~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag-~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g 331 (495)
T PRK14995 256 FTHRI---ILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAG-MFMLPVMVASGFSGPIAGILVSRLGLRLVATGG 331 (495)
T ss_pred hCCcc---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHH
Confidence 33222 1222222233333344456677888765 699999999 888999999999999999999999999988877
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCCCCcchhhHHHHHHHHHHHHhhhccccccccccccccCchhhhhHHHHHHHHHHHHHH
Q 047115 369 GIQILVSQVMIRSIMAAQLGDHGGFNIGYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFT 448 (522)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~ 448 (522)
.....++..++.... .....+.......+.+.+.+....+.. ....+..|++.++.+.++.++...+|+
T Consensus 332 ~~~~~~~~~~l~~~~----------~~~~~~~~~~~~~l~G~g~g~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~lG~ 400 (495)
T PRK14995 332 MALSALSFYGLAMTD----------FSTQQWQAWGLMALLGFSAASALLAST-SAIMAAAPPEKAAAAGAIETMAYELGA 400 (495)
T ss_pred HHHHHHHHHHHHHhc----------CCCchHHHHHHHHHHHHhHHHHHHHHH-HHHHhcCCHHhcchHHHHHHHHHHHHH
Confidence 776666655444321 111122233334444455444433333 344578899999999999999999999
Q ss_pred HHHHHHHHHHHHh
Q 047115 449 FLVAQTFLAMLCH 461 (522)
Q Consensus 449 ~~~~~~~~~~~~~ 461 (522)
.+++.+.+.+.++
T Consensus 401 ~~G~ai~g~i~~~ 413 (495)
T PRK14995 401 GLGIAIFGLLLSR 413 (495)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988764
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.5e-27 Score=243.18 Aligned_cols=360 Identities=13% Similarity=0.068 Sum_probs=247.1
Q ss_pred HHHHHHHHHHHHHHhhhhhcchhhccccccHHHHHHhhhhhhhcccCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHH
Q 047115 3 IFIVLSCIVAATSGLIFGYDIGVSGGVTLMEPFLKKCFLEVYKKMKEDPKISNYGKFDSQLLAAFTSSLYIAGLIAFLFA 82 (522)
Q Consensus 3 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~~~~~s~~~~~~~i~~~~~ 82 (522)
+..|.....+....+....+.....+. +|++.+++ |+++++.++..+.+.++..+++++.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~------------------g~s~~~~g~~~~~~~~~~~~~~~~~ 75 (394)
T PRK10213 16 RPNWSAVFSVAFCVACLIIVEFLPVSL--LTPMAQDL------------------GISEGVAGQSVTVTAFVAMFASLFI 75 (394)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhh--HHHHHHHc------------------CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666655555543332222 36665555 7899999999999999999999999
Q ss_pred HHhhhhhccccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhhhhHHHHHHHhhhhhhHHHHHHHHHHHhhh
Q 047115 83 SKVTRAFGRKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCCYSNHCSIGGAAFNIYMLILGCVLLGVGI 162 (522)
Q Consensus 83 g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~l~~~r~l~G~~~ 162 (522)
|+++||+|||+++. .+.++.+++++++.+++|++.+++.|+++|++.
T Consensus 76 g~l~Dr~grr~~~~---------------------------------~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~ 122 (394)
T PRK10213 76 TQTIQATDRRYVVI---------------------------------LFAVLLTLSCLLVSFANSFSLLLIGRACLGLAL 122 (394)
T ss_pred HHHhcccCcHHHHH---------------------------------HHHHHHHHHHHHHHHHChHHHHHHHHHHHHHhh
Confidence 99999999999999 999999999999999999999999999999999
Q ss_pred hhhhccccccccccccccccccccCCcc-hhHHHHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHhhHHHHHHHHHH
Q 047115 163 GFTSQSIQRFNQFAYMILLSSNFETTRL-SHIDFLLQISICYLILSANLLNYGTQKIKGSWGWRISLAMAAVPASILTIG 241 (522)
Q Consensus 163 g~~~~~~~~~~~~~~~~~i~~~~~~~~~-g~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~gwr~~f~i~~~~~~~~~~~ 241 (522)
|...+....+ +.| ++|+++ +++.++...+.++|..+++.++..+.+. +|||+.|++.++..++..+.
T Consensus 123 g~~~~~~~~~--------i~~-~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~---~gw~~~f~~~~~l~~~~~l~ 190 (394)
T PRK10213 123 GGFWAMSASL--------TMR-LVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGEL---IGWRNVFNAAAVMGVLCIFW 190 (394)
T ss_pred HHHHHHHHHH--------HHH-HcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---cCHHHHHHHHHHHHHHHHHH
Confidence 9999999999 999 888888 9999999999999999999999988754 48999999877665554333
Q ss_pred -hcccCCChHHHHHhCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHHhhccccchhHHHHHHHHHHhhhccchhhHhc-H
Q 047115 242 -SLFLPETPNSIIQRNKDHQKAEEILQIVRNTTDVKAELDDIIRASSKIIHRIYRPQLVMAILIPFQQVTRVNVISFN-A 319 (522)
Q Consensus 242 -~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 319 (522)
....||+|+. +++ .+ ++. .+.+++ +..+......+...........+ .
T Consensus 191 ~~~~~p~~~~~---~~~-~~--~~~---------------------~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (394)
T PRK10213 191 IIKSLPSLPGE---PSH-QK--QNT---------------------FRLLQR---PGVMAGMIAIFMSFAGQFAFFTYIR 240 (394)
T ss_pred HHHHCCCCCcc---ccc-ch--hHH---------------------HHHhcC---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3346775421 101 00 000 022222 22222212222222222223344 4
Q ss_pred HHHHHHcCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcchhhH
Q 047115 320 PVLFMTIKVRKSTSLLMSAVVPDGIGTVSTILPMILADKLGRTVLFLLGGIQILVSQVMIRSIMAAQLGDHGGFNIGYAY 399 (522)
Q Consensus 320 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (522)
|.+.++.|++..+.+ ......+++.+++.++.+++.||.+++ .+..+..........+.... +..+
T Consensus 241 p~~~~~~g~s~~~~g-~~~~~~~~~~iig~~~~~~l~~r~~~~-~l~~~~~~~~~~~~~l~~~~------------~~~~ 306 (394)
T PRK10213 241 PVYMNLAGFGVDGLT-LVLLSFGIASFVGTSLSSFILKRSVKL-ALAGAPLVLAVSALVLTLWG------------SDKI 306 (394)
T ss_pred HHHHHhcCCChhHHH-HHHHHHHHHHHHHHHHHHHHHhccchh-HHHHHHHHHHHHHHHHHHHh------------hhHH
Confidence 777778899998888 788888999999999999999996544 43333333233322222211 1233
Q ss_pred HHHHHHHHHHHhhhccccccccccccccCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHH
Q 047115 400 LILFLICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLVAQTFLAMLCHFKAGVFFCFGGW 473 (522)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 473 (522)
.......+.+.+++... +.......+..| +.+++..++.....+++..+++.+.|.+.|+.+....+..+++
T Consensus 307 ~~~~~~~l~G~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~ 378 (394)
T PRK10213 307 VATGVAIIWGLTFALVP-VGWSTWITRSLA-DQAEKAGSIQVAVIQLANTCGAAIGGYALDNIGLTSPLMLSGT 378 (394)
T ss_pred HHHHHHHHHHHHHHhhh-HHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHH
Confidence 33344444444444332 222334456666 4466777777788889999999999999998886555544443
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.7e-26 Score=239.84 Aligned_cols=376 Identities=11% Similarity=0.026 Sum_probs=262.5
Q ss_pred HHHHHHHHHHHHHHhhhhhcchhhccccccHHHHHHhhhhhhhcccCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHH
Q 047115 3 IFIVLSCIVAATSGLIFGYDIGVSGGVTLMEPFLKKCFLEVYKKMKEDPKISNYGKFDSQLLAAFTSSLYIAGLIAFLFA 82 (522)
Q Consensus 3 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~~~~~s~~~~~~~i~~~~~ 82 (522)
+..+...+...++.+...++.+.+.+.. |++.+++ |++..+.++..+.+.+++.+++++.
T Consensus 9 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~------------------~~s~~~~~~~~~~~~~~~~~~~~~~ 68 (406)
T PRK15402 9 RQALLFPLCLVLFEFATYIANDMIQPGM--LAVVEDF------------------NAGAEWVPTSMTAYLAGGMFLQWLL 68 (406)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHhcch--HHHHHHh------------------CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456777778888888888888877664 7777776 6799999999999999999999999
Q ss_pred HHhhhhhccccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhhhhHHHHHHHhhhhhhHHHHHHHHHHHhhh
Q 047115 83 SKVTRAFGRKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCCYSNHCSIGGAAFNIYMLILGCVLLGVGI 162 (522)
Q Consensus 83 g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~l~~~r~l~G~~~ 162 (522)
|+++||+|||+++. .+..+.+++++...++++++.+++.|+++|++.
T Consensus 69 G~l~dr~g~r~~l~---------------------------------~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~ 115 (406)
T PRK15402 69 GPLSDRIGRRPVML---------------------------------AGVAFFILTCLAILLAQSIEQFTLLRFLQGIGL 115 (406)
T ss_pred HHHHHHhCChHHHH---------------------------------HHHHHHHHHHHHHHHHccHHHHHHHHHHHHhHh
Confidence 99999999999999 999999999999999999999999999999999
Q ss_pred hhhhccccccccccccccccccccCCcc-hhHHHHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHhhHHHHHHHHH-
Q 047115 163 GFTSQSIQRFNQFAYMILLSSNFETTRL-SHIDFLLQISICYLILSANLLNYGTQKIKGSWGWRISLAMAAVPASILTI- 240 (522)
Q Consensus 163 g~~~~~~~~~~~~~~~~~i~~~~~~~~~-g~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~gwr~~f~i~~~~~~~~~~- 240 (522)
+...+....+ +.| .+|+++ .+..++......+|..++|.++..+.+. .+||+.|++.++..++..+
T Consensus 116 ~~~~~~~~~~--------i~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~---~~w~~~~~~~~~~~~~~~~~ 183 (406)
T PRK15402 116 CFIGAVGYAA--------IQE-SFEEADAIKITALMANVALLAPLLGPLVGAALIHV---LPWRGMFVLFAALAALSFFG 183 (406)
T ss_pred hhHHHHHHHH--------HHH-HhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---cCccHHHHHHHHHHHHHHHH
Confidence 9888888888 999 888888 8889998888889999999998877654 3899999887666555444
Q ss_pred HhcccCCChHHHHHhCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHHhhccccchhHHHHHHHHHHhhhccchhhHhcHH
Q 047115 241 GSLFLPETPNSIIQRNKDHQKAEEILQIVRNTTDVKAELDDIIRASSKIIHRIYRPQLVMAILIPFQQVTRVNVISFNAP 320 (522)
Q Consensus 241 ~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (522)
.....||+++. +++ +.+. ++..+..+++++++..+......... .........+.|
T Consensus 184 ~~~~~~~~~~~---~~~-~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~p 239 (406)
T PRK15402 184 LWRAMPETAGR---VGE-KLSL-----------------KELGRDYKLVLKNRRFVAGALALGLV---SLPLLAWIALSP 239 (406)
T ss_pred HHHhCCCCCcc---ccc-cccH-----------------HHHHHHHHHHHcCcHHHHHHHHHHHH---HHHHHHHHHHhH
Confidence 33456776431 111 0000 01111112334433222222221111 111223344567
Q ss_pred HHH-HHcCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcchhhH
Q 047115 321 VLF-MTIKVRKSTSLLMSAVVPDGIGTVSTILPMILADKLGRTVLFLLGGIQILVSQVMIRSIMAAQLGDHGGFNIGYAY 399 (522)
Q Consensus 321 ~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (522)
.++ +..|++..+.+ .......++.+++.++.+++.||+++|+.+..+.....++..++...... .....+
T Consensus 240 ~~~~~~~g~~~~~~g-~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~--------~~~~~~ 310 (406)
T PRK15402 240 VILISGEQLSSYEYG-LLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVI--------SSHAYL 310 (406)
T ss_pred HHHHHHhCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHc--------ccccHH
Confidence 665 45788888877 66667777889999999999999999999888777666666655543210 111222
Q ss_pred HHHHHHHHHHHhhhccccccccccccccCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHH
Q 047115 400 LILFLICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLVAQTFLAMLCHFKAGVFFCFGGWVAFMT 478 (522)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~ 478 (522)
.......+.+.+.+....+. .... ...++++|++..++.+....++..+++.+.+.+.+..+...+.....++.+..
T Consensus 311 ~~~~~~~~~g~g~~~~~~~~-~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~ 387 (406)
T PRK15402 311 WLTAGLSLYAFGIGLANAGL-YRLT-LFSSDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLGGGNGLFNLFNLANGLLW 387 (406)
T ss_pred HHHHHHHHHHHHHHHHhhhH-HHHH-hhhccccccHHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHHH
Confidence 33333444444444332222 2222 23344889999999999999999999999999888777555444444333333
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.7e-26 Score=246.24 Aligned_cols=379 Identities=16% Similarity=0.105 Sum_probs=268.2
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhhh
Q 047115 55 NYGKFDSQLLAAFTSSLYIAGLIAFLFASKVTRAFGRKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCC 134 (522)
Q Consensus 55 ~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 134 (522)
+.++.+.....+..+++++|.++|.+++|+++||+|||++++ .+.++
T Consensus 111 ~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~---------------------------------~~~~~ 157 (521)
T KOG0255|consen 111 NLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLL---------------------------------VSLLL 157 (521)
T ss_pred ceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHH---------------------------------HHHHH
Confidence 445667788899999999999999999999999999999999 99999
Q ss_pred hHHHHHHHhhhhhhHHHHHHHHHHHhhhhhhhccccccccccccccccccccCCcc-hhHHHHHHHHHHHHHHHHHHHHh
Q 047115 135 YSNHCSIGGAAFNIYMLILGCVLLGVGIGFTSQSIQRFNQFAYMILLSSNFETTRL-SHIDFLLQISICYLILSANLLNY 213 (522)
Q Consensus 135 ~~~~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~-g~~~~~~~~~~~lG~~~~~~~~~ 213 (522)
..++.+++++++|++.+++.|++.|++.+........+ ++| +.++++ +.+..+ ......+..+++.+++
T Consensus 158 ~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~~~~~~--------~~E-~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a 227 (521)
T KOG0255|consen 158 FIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLTVGFGL--------VAE-IVSPKQRGLALTL-GGFFFVGGLMLPAGAA 227 (521)
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHhhccchhHHhHhh--------hee-ecCcchhhHHHHH-HHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999 999 777777 999998 5455555555555554
Q ss_pred hhhccCCCCchHHHHHhhHHHHHHHHHHhcccCCChHHHHHhCCCHHHHHHHHHHHcCC----cchHHHHHHH--HHHH-
Q 047115 214 GTQKIKGSWGWRISLAMAAVPASILTIGSLFLPETPNSIIQRNKDHQKAEEILQIVRNT----TDVKAELDDI--IRAS- 286 (522)
Q Consensus 214 ~l~~~~~~~gwr~~f~i~~~~~~~~~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~--~~~~- 286 (522)
.+.. +||+.+++..++.++.++..++.||+|||+..+++ .+++.+.+++..+. .+.+...+.. .+..
T Consensus 228 ~~~~-----~Wr~~~~~~~~~~~~~~~~~~l~~Es~rwl~~~g~-~~~a~~~l~~~a~~n~~~~~~~~~~~~~~~~~~~~ 301 (521)
T KOG0255|consen 228 YITR-----DWRWLFWIISIPSGLFLLLWFLPPESPRWLLSKGR-IDEAIKILKKIAKLNGRKLSVKELLRLELLLRPLK 301 (521)
T ss_pred HHHh-----hHHHHHHHHHHHHHHHHHHHHccCcChHHHHHcCc-hHHHHHHHHHHHhhcCCCCCcHHHHHHHHHhhHhh
Confidence 4442 79999999988888877776777799999999999 88888888776432 1221111111 0100
Q ss_pred ----------Hhhcccc-chhHHHHHHHHHHhhhccchhhHhcHHHHHHHcCCCCchhhHHHhHHHHHHHHHHHHhHHHH
Q 047115 287 ----------SKIIHRI-YRPQLVMAILIPFQQVTRVNVISFNAPVLFMTIKVRKSTSLLMSAVVPDGIGTVSTILPMIL 355 (522)
Q Consensus 287 ----------~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l 355 (522)
.++++.+ .++.+....+..+..... ++. ..+...+++.+.. ......+.....+....+..
T Consensus 302 ~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~-----y~g-l~~~~~~lg~~~~--~~~~~~~~~~~p~~~~~~~~ 373 (521)
T KOG0255|consen 302 LLFTEPKISFLDLFRTPRLRYRTLYLLFIWFVFSLV-----YYG-LSLNVSGLGGNIY--LNFTLSGLVELPAYFRNGLL 373 (521)
T ss_pred hhccCCCCchhhhhcCHHHHHHHHHHHHHHHHHhHH-----HHh-hhhhhhhcCchHH--HHHHHHHHHHhhHHHHHHHH
Confidence 1233222 233333333222221111 121 1122223333433 34455555778888888999
Q ss_pred hhhccchHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcchhhHHHHHHHHHHHHhhhccccccccccccccCchhhhhH
Q 047115 356 ADKLGRTVLFLLGGIQILVSQVMIRSIMAAQLGDHGGFNIGYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFPLEIRSA 435 (522)
Q Consensus 356 ~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~ 435 (522)
.|++|||.....+.....++.+...+... ....+.......+..++.+.++... +.+.+|++|+..|..
T Consensus 374 ~~~~gR~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~el~pt~~r~~ 442 (521)
T KOG0255|consen 374 LPEFGRRPPLFLSLFLAGIGLLLFGWLPD----------DLGGWLHWILPLLGKFFIGSAFNLI-FLYSAELIPTVVRNT 442 (521)
T ss_pred HHHhCcHHHHHHHHHHHHHHHHHHHHhhc----------cchhHHHHHHHHHHHHHHHHHHHHH-HHHHHhhccHHHHHH
Confidence 99999999999999998888888877642 1111233333444444444455544 688899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHh
Q 047115 436 GQSITVAVDLLFTFLVAQTFLAMLCHFKAGVFFCFGGWVAFMTTFVHFFLPETKYMPIEFMDKVWR 501 (522)
Q Consensus 436 ~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 501 (522)
+.+..++...++++++|.+............+..++....+.+.+...++||++++.+.+..++.+
T Consensus 443 ~~~~~~~~~~~~~i~ap~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lpet~~~~l~~t~~~~~ 508 (521)
T KOG0255|consen 443 AVGAISAAARLGSILAPLFPLLLRQMFPLLGLILFGWLALLLGLLSLLLLPETKGKPLPGTLLDAE 508 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHhcCcccCCCCCchhHHHHH
Confidence 999999999999999998865554432222233356666777777778999999998765544433
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.8e-27 Score=251.63 Aligned_cols=392 Identities=11% Similarity=0.009 Sum_probs=255.3
Q ss_pred hHHHHHHHHHHHHHHhhhhhcchhhccccccHHHHHHhhhhhhh----cccCCCCCCCCCCCchhHHHHHHHHHHHHHHH
Q 047115 2 TIFIVLSCIVAATSGLIFGYDIGVSGGVTLMEPFLKKCFLEVYK----KMKEDPKISNYGKFDSQLLAAFTSSLYIAGLI 77 (522)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~p~i~~~~~~~~~~~~~~~s~~~~~~~i 77 (522)
.+.++.++....++..+...|...++... +.+.++.....+. +...+.....|++++..+.|++.+.+.+++.+
T Consensus 14 ~~~r~~i~~~~~~~~~~~y~dr~~~~~a~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~ 91 (465)
T TIGR00894 14 CSFRLFLSFLLHICNVIIIAQRICLSLTM--VAMVNKENSTDLACLSAENELDNIKNPNFKWSGALQGLILSSHFYGQII 91 (465)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHhhheEEE--EEcccCCCCCCccccccccccccccCCCCCCCHHHhhHHHHHHHHHHHH
Confidence 45567777777777778888888887664 3333311000000 00111122337899999999999999999999
Q ss_pred HHHHHHHhhhhhccccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhhhhHHHHHHHhhh--hhhHHHHHHH
Q 047115 78 AFLFASKVTRAFGRKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCCYSNHCSIGGAA--FNIYMLILGC 155 (522)
Q Consensus 78 ~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a--~~~~~l~~~r 155 (522)
++++.|+++||+|||+++. .+.++++++.+++.++ .+++.+++.|
T Consensus 92 ~~~~~g~l~dr~g~r~~l~---------------------------------~~~~~~~~~~~~~~~~~~~~~~~l~~~r 138 (465)
T TIGR00894 92 IQIPVGYLAGKYVFKWSIG---------------------------------IGMFLSSVISIVIPWAAGGGIALVVFCR 138 (465)
T ss_pred HHcchHHHHHHhCcchhhH---------------------------------HHHHHHHHHHHHHHHHHHcCchHHHHHH
Confidence 9999999999999999999 9999988888887554 5678899999
Q ss_pred HHHHhhhhhhhccccccccccccccccccccCCcc-hhHHHHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHhhHHH
Q 047115 156 VLLGVGIGFTSQSIQRFNQFAYMILLSSNFETTRL-SHIDFLLQISICYLILSANLLNYGTQKIKGSWGWRISLAMAAVP 234 (522)
Q Consensus 156 ~l~G~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~-g~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~gwr~~f~i~~~~ 234 (522)
+++|++.+...+....+ ++| ++|+++ +++.++...+..+|..+++.+++.+.+.. .|||+.|++.++.
T Consensus 139 ~~~G~~~~~~~~~~~~~--------~~~-~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~--~gw~~~f~i~~~~ 207 (465)
T TIGR00894 139 VIQGLAQGSVSPATHKI--------IVK-WAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESW--GGWPMIFYVFGIV 207 (465)
T ss_pred HHHHHhcccchhhHHHH--------HHh-cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--CCCCeehhhhhHH
Confidence 99999999999999999 999 888888 99999999999999999999988877431 2899999998777
Q ss_pred HHHHHHHh-cccCCChHHHHHhCCCHHHHHHHHHHH-cCCcchHHHHHHHHHHHHhhccccchhHHHHHHHHHHhhhccc
Q 047115 235 ASILTIGS-LFLPETPNSIIQRNKDHQKAEEILQIV-RNTTDVKAELDDIIRASSKIIHRIYRPQLVMAILIPFQQVTRV 312 (522)
Q Consensus 235 ~~~~~~~~-~~lpesp~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 312 (522)
.++..+.+ .+.+|+|+. ++.. .++.++..++. +.+++.+.. +...++++++ +..+......+......
T Consensus 208 ~~~~~~~~~~~~~~~p~~--~~~~-~~~~~~~i~~~~~~~~~~~~~----~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 277 (465)
T TIGR00894 208 GCAWSLLWFVFPADDPSI--HPCI-SKFEKKYINSSLQGQKGSTRQ----SLPIKAIPKS---LPVWAIWFAIFGHFWLY 277 (465)
T ss_pred HHHHHHHHHHHhcCCccc--CCCC-CHHHHHHHHhhcccccCCCCC----CCCHHHHhcC---HHHHHHHHHHHHHHHHH
Confidence 66654444 445677642 1111 11111111111 110000000 0001122222 22333333335555566
Q ss_pred hhhHhcHHHHHH-HcCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhhccchHHH--------HHHHHHHHHHHHHHHHHH
Q 047115 313 NVISFNAPVLFM-TIKVRKSTSLLMSAVVPDGIGTVSTILPMILADKLGRTVLF--------LLGGIQILVSQVMIRSIM 383 (522)
Q Consensus 313 ~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~--------~~~~~~~~~~~~~~~~~~ 383 (522)
+.+..|.|.+++ ..|++..+.+ +....+.++.+++.++.|+++||+++|+.. ..+......+...+....
T Consensus 278 ~~~~~~lp~~l~~~~g~s~~~~g-~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (465)
T TIGR00894 278 TILPTYLPTFISWVLRVSGKENG-LLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPY 356 (465)
T ss_pred HHHHHHHHHHHHHHhCcChHHhH-HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677889999885 4699998888 888889999999999999999997644211 111111111111111110
Q ss_pred HHhhCCCCCCcchhhHHHHHHHHHHHHhhhccccccccccccccCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 047115 384 AAQLGDHGGFNIGYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLVAQTFLAMLCHF 462 (522)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 462 (522)
.....+..+...++...+.+.. .+..+....|..| +.+|.+.|+.+..+.++++++|.+.+.+.+..
T Consensus 357 ----------~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~-~~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~ 423 (465)
T TIGR00894 357 ----------LSAAFYLTIIILTLANAVSSGP-LAGVLINSLDLAP-RFLGFIKGITGLPGFIGGLIASTLAGNILSQD 423 (465)
T ss_pred ----------cCCchHHHHHHHHHHHHHhhhh-hhhhhhchhhcCh-hHHHHHHHHHHHHHHHHHHHHHHhhheeeCCC
Confidence 0111222222333332322222 2223344446666 48999999999999999999999999887654
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=3e-27 Score=243.02 Aligned_cols=360 Identities=16% Similarity=0.189 Sum_probs=241.8
Q ss_pred hhhhhcchhhccccccHHHHHHhhhhhhhcccCCCCCCCCCCCchhHHHHHHH-----HHHHHHHHHHHHHHHhhhhhcc
Q 047115 17 LIFGYDIGVSGGVTLMEPFLKKCFLEVYKKMKEDPKISNYGKFDSQLLAAFTS-----SLYIAGLIAFLFASKVTRAFGR 91 (522)
Q Consensus 17 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~~~~~s-----~~~~~~~i~~~~~g~l~dr~Gr 91 (522)
+.+.+|...++... +.+.++++. +.++++.+...+ ..+++..+++++.|+++||+||
T Consensus 3 ~~~~~~~~~~~~~~--~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~ 64 (394)
T TIGR00883 3 AVEWFDFYLYGFAA--VLVFHTFFP----------------PSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGR 64 (394)
T ss_pred chhHHHHHHHHHHH--HHHHHHhcC----------------CCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhh
Confidence 45677777776543 444444431 123444444333 3344556789999999999999
Q ss_pred ccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhhhhHHHHHHHhhhhhhH--------HHHHHHHHHHhhhh
Q 047115 92 KASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCCYSNHCSIGGAAFNIY--------MLILGCVLLGVGIG 163 (522)
Q Consensus 92 k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~--------~l~~~r~l~G~~~g 163 (522)
|++++ .+.++.+++++++++++++. .+++.|+++|++.+
T Consensus 65 r~~l~---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~ 111 (394)
T TIGR00883 65 KKTLV---------------------------------ITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQGFSLG 111 (394)
T ss_pred HHHHH---------------------------------HHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHHhhcc
Confidence 99999 99999999999999998875 47889999999999
Q ss_pred hhhccccccccccccccccccccCCcc-hhHHHHHHHHHHHHHHHHHHHHhhhhccC-----CCCchHHHHHhhHHHHHH
Q 047115 164 FTSQSIQRFNQFAYMILLSSNFETTRL-SHIDFLLQISICYLILSANLLNYGTQKIK-----GSWGWRISLAMAAVPASI 237 (522)
Q Consensus 164 ~~~~~~~~~~~~~~~~~i~~~~~~~~~-g~~~~~~~~~~~lG~~~~~~~~~~l~~~~-----~~~gwr~~f~i~~~~~~~ 237 (522)
...+....+ +.| +.++++ ++..++.+.+..+|.++++.++..+.... ..++||+.|.+.++..++
T Consensus 112 ~~~~~~~~~--------~~~-~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 182 (394)
T TIGR00883 112 GEWGGAALY--------LAE-YAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVSAVLVLI 182 (394)
T ss_pred ccccccHHH--------hhh-cCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchHHHHHHHHHHHHH
Confidence 999999999 999 888888 99999999999999999998876654311 246899999988777766
Q ss_pred HHHHhcccCCChHHHHHhCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHHhhccccchhHHHHHHHHHHhhhccchhhHh
Q 047115 238 LTIGSLFLPETPNSIIQRNKDHQKAEEILQIVRNTTDVKAELDDIIRASSKIIHRIYRPQLVMAILIPFQQVTRVNVISF 317 (522)
Q Consensus 238 ~~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (522)
........||+|++..++++ +++ .+.+.. +.++++ +++.+......+...........
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~-~~~-------------~~~~~~-------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 240 (394)
T TIGR00883 183 GLYLRRNLEETPVFEKAQEK-HKK-------------KRGPIR-------ETLTKH-RKPFLLGLGLVIATTTTFYLITT 240 (394)
T ss_pred HHHHHHhcCCChhHHHHHhc-ccc-------------ccCCHH-------HHHHhc-hHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666667887653211111 000 000011 122221 12233333333333344455667
Q ss_pred cHHHHH-HHcCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhhccchHHHHHHHHHHHHHH-HHHHHHHHHhhCCCCCCcc
Q 047115 318 NAPVLF-MTIKVRKSTSLLMSAVVPDGIGTVSTILPMILADKLGRTVLFLLGGIQILVSQ-VMIRSIMAAQLGDHGGFNI 395 (522)
Q Consensus 318 ~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 395 (522)
+.|.++ ++.|.+..+.+ .......+...++.++.++++||+|||+.+.....+..+.. ..+.... ..
T Consensus 241 ~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~----------~~ 309 (394)
T TIGR00883 241 YLPTYLTQTLGLSANSAL-LVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALL----------DS 309 (394)
T ss_pred HHHHHHHHhcCCChhHHH-HHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHh----------cC
Confidence 788888 56788888888 78888899999999999999999999998775544433322 2221111 11
Q ss_pred hhhHHHHHHHHHHHHhhhccccccccccccccCchhhhhHHHHHHH-HHHHHHHHHHHHHHHHHHHhcc-chhhHHH
Q 047115 396 GYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITV-AVDLLFTFLVAQTFLAMLCHFK-AGVFFCF 470 (522)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~ 470 (522)
...+......++...+.+... +....+..|.+|++.|+++.++.. ....++..++|.+.+.+.++.+ +.....+
T Consensus 310 ~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~ 385 (394)
T TIGR00883 310 GSFTLFFFLVLGLALIGGMYT-GPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYY 385 (394)
T ss_pred CchHHHHHHHHHHHHHHHHHh-hhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHH
Confidence 122233333333333333333 344567789999999999999854 4456788899999999999887 4444433
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.8e-27 Score=250.73 Aligned_cols=350 Identities=13% Similarity=0.066 Sum_probs=227.6
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhhhhHH
Q 047115 58 KFDSQLLAAFTSSLYIAGLIAFLFASKVTRAFGRKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCCYSN 137 (522)
Q Consensus 58 ~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 137 (522)
|++.++.+++.+.+.++..++.++.|+++||+|||++++ .+.++.++
T Consensus 50 g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~---------------------------------~~~~~~~~ 96 (455)
T TIGR00892 50 QATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVI---------------------------------AGGLLASL 96 (455)
T ss_pred CcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHH---------------------------------hhHHHHHH
Confidence 789999999999999999999999999999999999999 99999999
Q ss_pred HHHHHhhhhhhHHHHH-HHHHHHhhhhhhhccccccccccccccccccccCCcchhHHHHHHHHHHHHHHHHHHHHhhhh
Q 047115 138 HCSIGGAAFNIYMLIL-GCVLLGVGIGFTSQSIQRFNQFAYMILLSSNFETTRLSHIDFLLQISICYLILSANLLNYGTQ 216 (522)
Q Consensus 138 ~~~~~~~a~~~~~l~~-~r~l~G~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~lG~~~~~~~~~~l~ 216 (522)
++++++++++++.+++ .|+++|++.|...+....+ +.+ +++++|+++.++.+.+..+|..+++.+++.+.
T Consensus 97 ~~~~~~~~~~~~~l~~~~~~l~G~~~~~~~~~~~~~--------~~~-~~~~~r~~a~g~~~~~~~~g~~~~~~l~~~l~ 167 (455)
T TIGR00892 97 GMILASFSSNVIELYLTAGFITGLGLAFNFQPSLTM--------LGK-YFYRRRPLANGLAMAGSPVFLSTLAPLNQYLF 167 (455)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhcchhhhhHHHHH--------HHH-HHHhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 9999999999988865 5799999999776666667 889 77754499999999999999999999988777
Q ss_pred ccCCCCchHHHHHhhHHHHHHHHHHhcc-cCCChHHHHHhCCCHHHHHHHHHHHcCCcc--hHHHHHHHHHHH-Hhhccc
Q 047115 217 KIKGSWGWRISLAMAAVPASILTIGSLF-LPETPNSIIQRNKDHQKAEEILQIVRNTTD--VKAELDDIIRAS-SKIIHR 292 (522)
Q Consensus 217 ~~~~~~gwr~~f~i~~~~~~~~~~~~~~-lpesp~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~l~~~ 292 (522)
+. +|||+.|++.++..++..+..++ .|+.+.. ++.+ .++.++ .+.....++ .....++..+.. .+++++
T Consensus 168 ~~---~gwr~~f~~~~~~~~~~~v~~~~~~~~~~~~--~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (455)
T TIGR00892 168 ES---FGWRGSFLILGGLLLHCCVCGALMRPVGPSQ--RVSK-SKSKEG-LPPDGSTKKLSKKSTAEKINRFLDFSLFTH 240 (455)
T ss_pred HH---hChHHHHHHHHHHHHHHHHHHHHhCCCCccc--cccc-cccccc-CCCCCccccccccchhhhhhhhcchHHhcC
Confidence 54 48999999987766554443333 3322210 0000 000000 000000000 000001111000 022332
Q ss_pred cchhHHHHHHHHHHhhhccchhhHhcHHHHHHHcCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhhc--cchHHHHHHHH
Q 047115 293 IYRPQLVMAILIPFQQVTRVNVISFNAPVLFMTIKVRKSTSLLMSAVVPDGIGTVSTILPMILADKL--GRTVLFLLGGI 370 (522)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~--g~~~~~~~~~~ 370 (522)
+ ..+......+...........+.|.+.++.|++..+.+ ...+..+++.++++++.+++.||. ++|+...++..
T Consensus 241 ~---~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~g~s~~~~g-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~ 316 (455)
T TIGR00892 241 R---GFLVYLSGNVIMFLGFFAPIIFLVPYAKDKGVDEYEAA-FLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFA 316 (455)
T ss_pred c---hHHHHHHHHHHHHHHccchHHHHHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHH
Confidence 2 22222222232333334455677888888899999988 888889999999999999999973 33433333322
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCCcchhhHHHHHHHHHHHHhhhccccccccccccccCchhhhhHHHHHHHHHHHHHHHH
Q 047115 371 QILVSQVMIRSIMAAQLGDHGGFNIGYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFL 450 (522)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~ 450 (522)
....+...+.... . ...+...+..++.+.+.+.. .+....+..|.+|+++++++.|+.+....+++++
T Consensus 317 ~~~~~l~~ll~~~----------~-~~~~~~~i~~~~~G~~~g~~-~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i 384 (455)
T TIGR00892 317 LLFNGLTHLLCAL----------A-GDYTGLVIYCIFFGLSFGSV-GALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLI 384 (455)
T ss_pred HHHHHHHHHHHHH----------h-chHHHHHHHHHHHHHHhchH-HHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHc
Confidence 2222211111111 0 12233333344444444332 3344566678999999999999999999999999
Q ss_pred HHHHHHHHHHhcc-ch-hhHHHHH
Q 047115 451 VAQTFLAMLCHFK-AG-VFFCFGG 472 (522)
Q Consensus 451 ~~~~~~~~~~~~g-~~-~~~~~~~ 472 (522)
+|.+.+.+.+..+ +. .+.+.++
T Consensus 385 gp~i~G~l~~~~g~~~~~f~~~~~ 408 (455)
T TIGR00892 385 GPPLAGRLVDATKNYKYIFYASGS 408 (455)
T ss_pred cccceeeeehhcCCcchHHHHhhH
Confidence 9999999998775 43 3333333
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.9e-27 Score=237.51 Aligned_cols=350 Identities=11% Similarity=0.012 Sum_probs=250.0
Q ss_pred HHHhhhhhcchhhccccccHHHHHHhhhhhhhcccCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhcccc
Q 047115 14 TSGLIFGYDIGVSGGVTLMEPFLKKCFLEVYKKMKEDPKISNYGKFDSQLLAAFTSSLYIAGLIAFLFASKVTRAFGRKA 93 (522)
Q Consensus 14 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~ 93 (522)
.+.++..+..+...... |.+..+. +.+..+.+++.+.+.++..++++++|+++||+|||+
T Consensus 6 ~~~~~~~~~~~~~~~~~--~~~~~~~------------------~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~ 65 (365)
T TIGR00900 6 AAQLISLIGTAITQVAL--PLYVLAG------------------TGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKK 65 (365)
T ss_pred HHHHHHHHHHHHHHHHH--HHHHHHh------------------hccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhH
Confidence 33444555555555444 6666665 458899999999999999999999999999999999
Q ss_pred ccccccccCcccchhhhhhhhhhhhhhhhcccccccchhhhhHHHHHHHhhhh-----hhHHHHHHHHHHHhhhhhhhcc
Q 047115 94 SILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCCYSNHCSIGGAAF-----NIYMLILGCVLLGVGIGFTSQS 168 (522)
Q Consensus 94 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~-----~~~~l~~~r~l~G~~~g~~~~~ 168 (522)
+++ .+.++.+++.++..++. +++.+++.|+++|++.+...+.
T Consensus 66 ~~~---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~ 112 (365)
T TIGR00900 66 VMI---------------------------------GADLIRAVLVAVLPFVALLGGLNIWQVYVLAGILAIAQAFFTPA 112 (365)
T ss_pred HHH---------------------------------HHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 999 89888888888888887 9999999999999999999999
Q ss_pred ccccccccccccccccccCCcc-hhHHHHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHhhHHHHHHHHHHhcc--c
Q 047115 169 IQRFNQFAYMILLSSNFETTRL-SHIDFLLQISICYLILSANLLNYGTQKIKGSWGWRISLAMAAVPASILTIGSLF--L 245 (522)
Q Consensus 169 ~~~~~~~~~~~~i~~~~~~~~~-g~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~gwr~~f~i~~~~~~~~~~~~~~--l 245 (522)
..++ +.| +.|+++ ++..++.+.+..+|.++++.+++.+.+.. |||+.|++.++..++..+..+. .
T Consensus 113 ~~~~--------~~~-~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~ 180 (365)
T TIGR00900 113 YQAM--------LPD-LVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATL---GIKWAIWVDAVGFAISALLIVSVRI 180 (365)
T ss_pred HHHH--------HHh-cCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999 999 888888 99999999999999999999998887543 7999998877665554443333 3
Q ss_pred CCChHHHHHhCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHHhhccccchhHHHHHHHHHHhhhccchhh-HhcHHHHHH
Q 047115 246 PETPNSIIQRNKDHQKAEEILQIVRNTTDVKAELDDIIRASSKIIHRIYRPQLVMAILIPFQQVTRVNVI-SFNAPVLFM 324 (522)
Q Consensus 246 pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 324 (522)
||+++ +++ ++..++ ..++..+..+++++++..+.......+. ....... ..+.|.+.+
T Consensus 181 ~~~~~----~~~-~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 239 (365)
T TIGR00900 181 PELAA----SEI-QALSNA-------------VLRDTREGIKFVLKNPLLRTLLLLALLF---NLVFAPAIVALFPYVQS 239 (365)
T ss_pred ccCCC----ccc-cccchh-------------HHHHHHhHHHHHHcCcHHHHHHHHHHHH---HHHHHHHHHHHhHHHHH
Confidence 33321 011 000000 0111111222334433333222222222 1112222 256777776
Q ss_pred H-cCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcchhhHHHHH
Q 047115 325 T-IKVRKSTSLLMSAVVPDGIGTVSTILPMILADKLGRTVLFLLGGIQILVSQVMIRSIMAAQLGDHGGFNIGYAYLILF 403 (522)
Q Consensus 325 ~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (522)
+ .|.+..+.+ .......++.+++.++.+++.||.+||+.+..+.....++...+... ++ +.+...+
T Consensus 240 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~-~~~~~~~ 306 (365)
T TIGR00900 240 KYLGRGSTHYG-WVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLT-----------PP-NFPLFLV 306 (365)
T ss_pred HHhCCchHHHH-HHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhh-----------ch-hHHHHHH
Confidence 5 788888888 88888899999999999999999999998887766555555444332 11 1333334
Q ss_pred HHHHHHHhhhccccccccccccccCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 047115 404 LICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLVAQTFLAMLCHFK 463 (522)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g 463 (522)
..++.+.+.+.. .+....+..|..|++.|+++.|+.+....++..+++.+.+.+.|+.|
T Consensus 307 ~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~~g 365 (365)
T TIGR00900 307 LWFAIGVGYGPI-NVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLADHLG 365 (365)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 444444444433 34455667899999999999999999999999999999999988753
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.9e-27 Score=244.86 Aligned_cols=371 Identities=12% Similarity=-0.013 Sum_probs=236.9
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhhhhHH
Q 047115 58 KFDSQLLAAFTSSLYIAGLIAFLFASKVTRAFGRKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCCYSN 137 (522)
Q Consensus 58 ~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 137 (522)
|+++++.+++.+.+.++..+++++.|+++||+|||+.+. .+.++.++
T Consensus 57 g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~---------------------------------~~~~~~~~ 103 (438)
T TIGR00712 57 GFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLP---------------------------------AGLILSAA 103 (438)
T ss_pred CCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehH---------------------------------HHHHHHHH
Confidence 679999999999999999999999999999999999999 88888888
Q ss_pred HHHHHhhh----hhhHHHHHHHHHHHhhhhhhhccccccccccccccccccccCCcc-hhHHHHHHHHHHHHHHHHHHHH
Q 047115 138 HCSIGGAA----FNIYMLILGCVLLGVGIGFTSQSIQRFNQFAYMILLSSNFETTRL-SHIDFLLQISICYLILSANLLN 212 (522)
Q Consensus 138 ~~~~~~~a----~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~-g~~~~~~~~~~~lG~~~~~~~~ 212 (522)
+.++.++. ++++.+.+.|++.|++.|..++..... +.| ++|+++ ++++++.+.+..+|..+++.+.
T Consensus 104 ~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~--------i~~-~~~~~~rg~~~~~~~~~~~~g~~~~~~l~ 174 (438)
T TIGR00712 104 VMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRT--------MVH-WWSQSERGTIVSIWNCAHNIGGGIPPLLV 174 (438)
T ss_pred HHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHH--------HHH-hcCcccchhHHHHHHHHHHhHhHHHHHHH
Confidence 88877664 467788899999999999988888888 999 898887 9999999999999999888775
Q ss_pred hhhhccCCCCchHHHHHhhHHHHHH-HHHHhcccCCChHHHHHhCCCHHHHHHH-HHHHcCCcchHHHHHHHHHHHHhhc
Q 047115 213 YGTQKIKGSWGWRISLAMAAVPASI-LTIGSLFLPETPNSIIQRNKDHQKAEEI-LQIVRNTTDVKAELDDIIRASSKII 290 (522)
Q Consensus 213 ~~l~~~~~~~gwr~~f~i~~~~~~~-~~~~~~~lpesp~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~ 290 (522)
...... ..+||+.|++.++..++ .++..+++||+|+... .++ .++.++. .++...+++.+.+.++. ..+..+
T Consensus 175 ~~~~~~--~~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 248 (438)
T TIGR00712 175 LLGMAW--FNDWHAALYFPAICAIIVALFAFAMMRDTPQSCG-LPP-IEEYRNDYPDDYNEKAEQELTAKEI--FMQYVL 248 (438)
T ss_pred HHHHHH--hhhhHHHHHHHHHHHHHHHHHHHHhccCCHHhcC-CCC-chhcccccccccccccccccchHHH--HHHHHc
Confidence 543322 23899999987776555 4455566788775310 001 0100000 00000000000000100 001233
Q ss_pred cccchhHHHHHHHHHHhhhccchhhHhcHHHHHHH-cCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhhccchHHHHHHH
Q 047115 291 HRIYRPQLVMAILIPFQQVTRVNVISFNAPVLFMT-IKVRKSTSLLMSAVVPDGIGTVSTILPMILADKLGRTVLFLLGG 369 (522)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~ 369 (522)
+++..+ ......+......+.+..|.|.++++ .|++..+++ .......+.++++.++.++++||+++++....+.
T Consensus 249 ~~~~~~---~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~-~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~ 324 (438)
T TIGR00712 249 PNKLLW---YIAIANVFVYLLRYGVLDWSPTYLKEVKHFALDKSS-WAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGV 324 (438)
T ss_pred cCchHH---HHHHHHHHHHHHHHHHHHhHHHHHHHccCCChhhHH-HHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHH
Confidence 332222 22222223333334566788998876 588988888 7888888999999999999999996443222222
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCCCcchhhHHHHHHHHHHHHhhhccccccccccccccCchhhhhHHHHHHHHHHHHHH-
Q 047115 370 IQILVSQVMIRSIMAAQLGDHGGFNIGYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFT- 448 (522)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~- 448 (522)
.......+....... . +....+.........+.+. .+..........|.+|++.|+++.|+.+...++++
T Consensus 325 ~~~~~~~~~~~~~~~---~-----~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~ 395 (438)
T TIGR00712 325 FFMTLVTIAVIVYWM---N-----PAGNPLVDMICMIVIGFLI-YGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGS 395 (438)
T ss_pred HHHHHHHHHHHHHHh---c-----CCCchHHHHHHHHHHHHHH-ccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhh
Confidence 222111111111110 0 0111122212222222111 11111212345699999999999999999888875
Q ss_pred HHHHHHHHHHHHhccch-hhHHHHHHHHHHHHHHHhhccCCC
Q 047115 449 FLVAQTFLAMLCHFKAG-VFFCFGGWVAFMTTFVHFFLPETK 489 (522)
Q Consensus 449 ~~~~~~~~~~~~~~g~~-~~~~~~~~~~i~~~~~~~~~~~~~ 489 (522)
.++|.+.|.+.++.++. .+.+..++.++..+......||.|
T Consensus 396 ~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (438)
T TIGR00712 396 VAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEK 437 (438)
T ss_pred hhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 67899999999988853 445555555666666666667665
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.2e-26 Score=232.79 Aligned_cols=352 Identities=12% Similarity=0.083 Sum_probs=242.2
Q ss_pred HHHHHHHHhhhhhcchhhccccccHHHHHHhhhhhhhcccCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 047115 9 CIVAATSGLIFGYDIGVSGGVTLMEPFLKKCFLEVYKKMKEDPKISNYGKFDSQLLAAFTSSLYIAGLIAFLFASKVTRA 88 (522)
Q Consensus 9 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr 88 (522)
.....++.++.+.+.+..++.. |.+++++ |+|..+.|++.+.+.+++.+++++.|+++||
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~l--p~~~~~~------------------~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr 67 (381)
T PRK03633 8 VLLLLCGLLLLTLAIAVLNTLV--PLWLAQE------------------HLPTWQVGVVSSSYFTGNLVGTLLAGYVIKR 67 (381)
T ss_pred HHHHHHHHHHHHHhhhhHHHHH--HHHHHHc------------------CCCHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3444577778888888888775 7777776 6799999999999999999999999999999
Q ss_pred hccccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhhhhHHHHHHHhhhhhhHHHHHHHHHHHhhhhhhhcc
Q 047115 89 FGRKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCCYSNHCSIGGAAFNIYMLILGCVLLGVGIGFTSQS 168 (522)
Q Consensus 89 ~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~ 168 (522)
+|||+++. .+.++.+++++++++++|++.+++.|+++|++.+...+.
T Consensus 68 ~g~k~~~~---------------------------------~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~ 114 (381)
T PRK03633 68 IGFNRSYY---------------------------------LASLIFAAGCAGLGLMVGFWSWLAWRFVAGIGCAMIWVV 114 (381)
T ss_pred HHHHHHHH---------------------------------HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999 999999999999999999999999999999999998888
Q ss_pred ccccccccccccccccccCCcc-hhHHHHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHhhHHHHHHHHHHhcccCC
Q 047115 169 IQRFNQFAYMILLSSNFETTRL-SHIDFLLQISICYLILSANLLNYGTQKIKGSWGWRISLAMAAVPASILTIGSLFLPE 247 (522)
Q Consensus 169 ~~~~~~~~~~~~i~~~~~~~~~-g~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~gwr~~f~i~~~~~~~~~~~~~~lpe 247 (522)
.... +.+ ..++++ +++++..+.+..+|..+|+.++..+.+.. .|+..+....+......+.....+|
T Consensus 115 ~~~~--------~~~-~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (381)
T PRK03633 115 VESA--------LMC-SGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTEL---MSVLPWVTGLVLAAILPLLFTRILN 182 (381)
T ss_pred HHHH--------HHH-hCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc---cchHHHHHHHHHHHHHHHHHhcccC
Confidence 7777 778 677777 99999999999999999999988876432 1222222221111111111212222
Q ss_pred ChHHHHHhCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHHhhccccchhHHHHHHHHHHhhhccchhhHhcHHHHHHHcC
Q 047115 248 TPNSIIQRNKDHQKAEEILQIVRNTTDVKAELDDIIRASSKIIHRIYRPQLVMAILIPFQQVTRVNVISFNAPVLFMTIK 327 (522)
Q Consensus 248 sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 327 (522)
++ .+ +++ ..+ .. +.++++..+......+.. .........+.|.+.++.|
T Consensus 183 ~~------~~-~~~----------~~~----~~-------~~~~~~~~~~~~~~~~~~---~~~~~~~~~~lp~~~~~~g 231 (381)
T PRK03633 183 QQ------AE-NHD----------STS----IW-------PMLKLRQARLGVNGCIIS---GIVLGSLYGLMPLYLNHQG 231 (381)
T ss_pred CC------CC-CCC----------CCC----HH-------HHHHhcchHHHHHHHHHH---HHHHHHHHHHHHHHHHHcC
Confidence 11 00 000 000 00 122222222211111111 1122334456788888889
Q ss_pred CCCchhhHHHhHHHHHHHHHHHHhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcchhhHHHHHHHHH
Q 047115 328 VRKSTSLLMSAVVPDGIGTVSTILPMILADKLGRTVLFLLGGIQILVSQVMIRSIMAAQLGDHGGFNIGYAYLILFLICV 407 (522)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (522)
.+....+ .......++.+++++..+++.||+++|+.+..+.....++.+.+... . .......+
T Consensus 232 ~s~~~~g-~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~-------------~---~~~~~~~l 294 (381)
T PRK03633 232 MSDASIG-FWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAMLSQ-------------A---AMAPALFI 294 (381)
T ss_pred CCHHHHH-HHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHhhh-------------H---HHHHHHHH
Confidence 9888888 77888889999999999999999999998887766666554433210 1 11111112
Q ss_pred HHHhhhccccccccccccccCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchh-hHHHHHHH
Q 047115 408 YKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLVAQTFLAMLCHFKAGV-FFCFGGWV 474 (522)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~ 474 (522)
.+.+.. ...|.......|..|+++++...+..+....++..++|.+.|.+.|+.++.. +.+.+.+.
T Consensus 295 ~g~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~ 361 (381)
T PRK03633 295 LGAAGF-TLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVS 361 (381)
T ss_pred HHHHHH-hHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHH
Confidence 222211 2234455556788888888888888888889999999999999999888544 44443333
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-26 Score=245.73 Aligned_cols=351 Identities=11% Similarity=-0.021 Sum_probs=213.0
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhhhhHH
Q 047115 58 KFDSQLLAAFTSSLYIAGLIAFLFASKVTRAFGRKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCCYSN 137 (522)
Q Consensus 58 ~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 137 (522)
|++.++.+++.+.+.+++.+++++.|+++||+|||+++. .+.+++++
T Consensus 67 gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~---------------------------------~~~~~~~~ 113 (476)
T PLN00028 67 NLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSA---------------------------------FLLMLTAP 113 (476)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHH---------------------------------HHHHHHHH
Confidence 789999999999999999999999999999999999999 99999999
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHhhhhhhhccccccccccccccccccccCCcc-hhHHHHHHHHHHHHHHHHHHHHhhhh
Q 047115 138 HCSIGGAAFNIYMLILGCVLLGVGIGFTSQSIQRFNQFAYMILLSSNFETTRL-SHIDFLLQISICYLILSANLLNYGTQ 216 (522)
Q Consensus 138 ~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~-g~~~~~~~~~~~lG~~~~~~~~~~l~ 216 (522)
+.++++++++++.+++.|+++|++.+... ....+ ++| ++|+++ ++++++......+|..+++.+...+.
T Consensus 114 ~~~~~~~~~s~~~l~~~r~l~G~~~~~~~-~~~~~--------i~~-~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~ 183 (476)
T PLN00028 114 AVFCMSLVSSATGFIAVRFFIGFSLATFV-SCQYW--------MST-MFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVF 183 (476)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHhhH-HHHHH--------HHH-hcChhheeHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988643 34556 899 888877 99999998777777766655543332
Q ss_pred c----c--CCCCchHHHHHhhHHHHHHHHHHhcccC-CChHHHHHhCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHHhh
Q 047115 217 K----I--KGSWGWRISLAMAAVPASILTIGSLFLP-ETPNSIIQRNKDHQKAEEILQIVRNTTDVKAELDDIIRASSKI 289 (522)
Q Consensus 217 ~----~--~~~~gwr~~f~i~~~~~~~~~~~~~~lp-esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 289 (522)
. . .+..|||+.|++.+++.++..+..++++ +.|+ ++ .++.++ + ...+ +.+. .+...+.
T Consensus 184 ~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~~~~~~p~-----~~-~~~~~~---~-~~~~--~~~~---~~~~~~~ 248 (476)
T PLN00028 184 PLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLTLGQDLPD-----GN-YRELKK---S-GTMP--KDSF---SKVLRYG 248 (476)
T ss_pred HHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHcCcCCC-----Cc-hhhHHh---c-Cccc--cccH---HHHHHHH
Confidence 1 1 1124899999997777666544444444 3332 11 111000 0 0000 0000 0111122
Q ss_pred ccccchhHHHHHHHHHHhhhccchhhHhcHHHHH-HHcCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhhccchH-----
Q 047115 290 IHRIYRPQLVMAILIPFQQVTRVNVISFNAPVLF-MTIKVRKSTSLLMSAVVPDGIGTVSTILPMILADKLGRTV----- 363 (522)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~----- 363 (522)
++.+ +.+...+..+........+..+.|.++ ++.|++..+++ .......+++++++++.|+++||++||+
T Consensus 249 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~-~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r 324 (476)
T PLN00028 249 VTNY---RTWILALTYGYSFGVELTMDNIIAEYFYDRFGLSLETAG-AIAASFGLMNLFARPAGGYLSDVAARRFGMRGR 324 (476)
T ss_pred HcCc---hhHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHH-HHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchh
Confidence 2222 222222222222222233455677776 45699998888 8888999999999999999999998752
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcchhhHHHHHHHHHHHHhhhccccccccccccccCchhhhhHHHHHHHHH
Q 047115 364 LFLLGGIQILVSQVMIRSIMAAQLGDHGGFNIGYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAV 443 (522)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~ 443 (522)
.... .....++.+.+..... . ...+..+...+++..+..... +..+.+..+.. ++.||++.|+.+..
T Consensus 325 ~~~~-~~~~~l~~i~~~~~~~---------~-~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~-~~~~g~~~g~~~~~ 391 (476)
T PLN00028 325 LWAL-WIVQTLGGVFCIWLGR---------A-NSLGAAIVVMILFSIFVQAAC-GATFGIVPFVS-RRSLGVISGLTGAG 391 (476)
T ss_pred HHHH-HHHHHHHHHHHHHhcc---------c-chHHHHHHHHHHHHHHHHHhh-hhhcccCcccC-hhhchhhhhhhhcc
Confidence 1111 1111111111111110 1 112222222233323222222 22344445654 47899999999888
Q ss_pred HHHHHHHHHHHHHHHHHhccc-hhhHHHHHHHHHHHHHHHhhc
Q 047115 444 DLLFTFLVAQTFLAMLCHFKA-GVFFCFGGWVAFMTTFVHFFL 485 (522)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~i~~~~~~~~~ 485 (522)
+.+++++++.+.+ ..+..++ ..+.+.+++.++. .++.++.
T Consensus 392 g~lg~~i~~~l~~-~~~~~~y~~~f~~~~~~~~i~-~~~~~~~ 432 (476)
T PLN00028 392 GNVGAVLTQLLFF-TGSSYSTETGISLMGVMIIAC-TLPVAFI 432 (476)
T ss_pred ccHHHHHHHHHHH-hcCCccHhhHHHHHHHHHHHH-HHHHHhe
Confidence 8888888877654 1122233 3444554444444 4444444
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.8e-26 Score=231.78 Aligned_cols=342 Identities=13% Similarity=0.080 Sum_probs=239.9
Q ss_pred hhhhhcchhhccccccHHHHHHhhhhhhhcccCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccc
Q 047115 17 LIFGYDIGVSGGVTLMEPFLKKCFLEVYKKMKEDPKISNYGKFDSQLLAAFTSSLYIAGLIAFLFASKVTRAFGRKASIL 96 (522)
Q Consensus 17 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~ 96 (522)
+..+.+.....+.. |.+.+++ |+++.+.+++.+.+.++..+++++.|+++||+|||+++.
T Consensus 15 ~~~~~~~~~~~~~~--p~~~~~~------------------g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~ 74 (385)
T TIGR00710 15 ILGPLGIDMYLPAF--PEIAADL------------------STPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLL 74 (385)
T ss_pred HHHHHHHHHhcccH--HHHHHHh------------------CCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHH
Confidence 44455666665554 6666665 679999999999999999999999999999999999999
Q ss_pred cccccCcccchhhhhhhhhhhhhhhhcccccccchhhhhHHHHHHHhhhhhhHHHHHHHHHHHhhhhhhhcccccccccc
Q 047115 97 PKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCCYSNHCSIGGAAFNIYMLILGCVLLGVGIGFTSQSIQRFNQFA 176 (522)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~ 176 (522)
.+.++.+++.+...++++++.+++.|++.|++.+...+....+
T Consensus 75 ---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~---- 117 (385)
T TIGR00710 75 ---------------------------------LGLFIFALSSLGLALSNNIETLLVLRFVQAFGASAGSVISQAL---- 117 (385)
T ss_pred ---------------------------------HHHHHHHHHHHHHHHHccHHHHHHHHHHHHcchhHHHHHHHHH----
Confidence 9999999999999999999999999999999999999999999
Q ss_pred ccccccccccCCcc-hhHHHHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHhhHHHHHHHH-HHhcccCCChHHHHH
Q 047115 177 YMILLSSNFETTRL-SHIDFLLQISICYLILSANLLNYGTQKIKGSWGWRISLAMAAVPASILT-IGSLFLPETPNSIIQ 254 (522)
Q Consensus 177 ~~~~i~~~~~~~~~-g~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~gwr~~f~i~~~~~~~~~-~~~~~lpesp~~~~~ 254 (522)
+.| ++|+++ ++..++.+....+|..+++.+++.+.+. .+||+.|++.++..++.. ...++.||+++.
T Consensus 118 ----~~~-~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 186 (385)
T TIGR00710 118 ----VRD-IYPGEELSRIYSILMPVLALAPAVAPLLGGYILVW---LSWHAIFAFLSLAGILLSALIFFILPETLPY--- 186 (385)
T ss_pred ----HHH-hcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---cCHHHHHHHHHHHHHHHHHHHHHhCCCCCCC---
Confidence 999 888888 9999999999999999999999887754 379999988766555543 334456775421
Q ss_pred hCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHHhhccccchhHHHHHHHHHHhhhccchhhHhcHHHHHH-HcCCCCchh
Q 047115 255 RNKDHQKAEEILQIVRNTTDVKAELDDIIRASSKIIHRIYRPQLVMAILIPFQQVTRVNVISFNAPVLFM-TIKVRKSTS 333 (522)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~ 333 (522)
++ +++.++ ..+ ..++.++++..+...... ............+.|.+++ +.|+++.+.
T Consensus 187 -~~-~~~~~~-------------~~~----~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 244 (385)
T TIGR00710 187 -EA-RIQIST-------------YFE----TFLLLLKSKMFWGYALIY---GASFGGFFAFFSGAPFVYIDIMGVSPSVF 244 (385)
T ss_pred -cc-cCCHHH-------------HHH----HHHHHHcCchhHHHHHHH---HHHHHHHHHHHHcChHHHHHHcCCCHHHH
Confidence 11 000000 000 111333333222222221 1122223344556677764 679998888
Q ss_pred hHHHhHHHHHHHHHHHHhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcchhhHHHHHHHHHHHHhhh
Q 047115 334 LLMSAVVPDGIGTVSTILPMILADKLGRTVLFLLGGIQILVSQVMIRSIMAAQLGDHGGFNIGYAYLILFLICVYKAGFA 413 (522)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (522)
+ .......++.+++.++.+++.||+++|+.+..+.....++.+++...... .............+.+.+.+
T Consensus 245 g-~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~g~~~~ 315 (385)
T TIGR00710 245 G-LLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAIL--------GLGSWAMIIGPMMFVGIGNS 315 (385)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHh--------ccchHHHHHHHHHHHHHHHH
Confidence 8 88888899999999999999999999998888776666665555443210 00111222222333333333
Q ss_pred ccccccccccccccCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047115 414 FSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLVAQTFLAML 459 (522)
Q Consensus 414 ~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~ 459 (522)
.. .+.......|..| +.|+++.++.+.....++.+.+.+.+...
T Consensus 316 ~~-~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~~~~ 359 (385)
T TIGR00710 316 MI-SSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVSLIH 359 (385)
T ss_pred HH-HHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 22 2333455567776 57899999999888877777777766443
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.4e-26 Score=240.77 Aligned_cols=372 Identities=10% Similarity=0.052 Sum_probs=256.7
Q ss_pred HHHHHHHHhhhhhcchhhccccccHHHHHHhhhhhhhcccCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 047115 9 CIVAATSGLIFGYDIGVSGGVTLMEPFLKKCFLEVYKKMKEDPKISNYGKFDSQLLAAFTSSLYIAGLIAFLFASKVTRA 88 (522)
Q Consensus 9 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr 88 (522)
....+++.++..+|.+.+++.. |.+.+++ |++..+.+++.+.+.++..++.+++|+++||
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~--p~~~~~~------------------g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~ 71 (471)
T PRK10504 12 LWIVAFGFFMQSLDTTIVNTAL--PSMAQSL------------------GESPLHMHMVIVSYVLTVAVMLPASGWLADR 71 (471)
T ss_pred HHHHHHHHHHHHHhHHHHHHHH--HHHHHHh------------------CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566788888888887654 7777776 6799999999999999999999999999999
Q ss_pred hccccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhhhhHHHHHHHhhhhhhHHHHHHHHHHHhhhhhhhcc
Q 047115 89 FGRKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCCYSNHCSIGGAAFNIYMLILGCVLLGVGIGFTSQS 168 (522)
Q Consensus 89 ~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~ 168 (522)
+|||++++ .+..+.+++.+++.++++++.+++.|+++|++.+...+.
T Consensus 72 ~g~r~~~~---------------------------------~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~ 118 (471)
T PRK10504 72 VGVRNIFF---------------------------------TAIVLFTLGSLFCALSGTLNELLLARVLQGVGGAMMVPV 118 (471)
T ss_pred hchHHHHH---------------------------------HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhHHHHHH
Confidence 99999999 889999999999999999999999999999999999998
Q ss_pred ccccccccccccccccccCCcc-hhHHHHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHhhHHHHHHHHHH-hcccC
Q 047115 169 IQRFNQFAYMILLSSNFETTRL-SHIDFLLQISICYLILSANLLNYGTQKIKGSWGWRISLAMAAVPASILTIG-SLFLP 246 (522)
Q Consensus 169 ~~~~~~~~~~~~i~~~~~~~~~-g~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~gwr~~f~i~~~~~~~~~~~-~~~lp 246 (522)
...+ +.| +.|+++ ++..++......+|..+++.+++.+.+. .|||+.|.+.....++..+. ....|
T Consensus 119 ~~~~--------~~~-~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~---~gw~~~f~~~~~~~~l~~~~~~~~~~ 186 (471)
T PRK10504 119 GRLT--------VMK-IVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEY---ASWHWIFLINIPVGIIGAIATLMLMP 186 (471)
T ss_pred HHHH--------HHH-HcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhh---ccHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 8888 999 889888 9999999999999999999999888754 48999999876655544333 33445
Q ss_pred CChHHHHHhCCCHHHHHHHHH---------HHcCCcc---hHHHH---------------HHHHHH-----HHhhccccc
Q 047115 247 ETPNSIIQRNKDHQKAEEILQ---------IVRNTTD---VKAEL---------------DDIIRA-----SSKIIHRIY 294 (522)
Q Consensus 247 esp~~~~~~~~~~~~~~~~~~---------~~~~~~~---~~~~~---------------~~~~~~-----~~~l~~~~~ 294 (522)
+.+. ++.+ .+....... ...+.+. ..... .+.++. ..++++++.
T Consensus 187 ~~~~---~~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 262 (471)
T PRK10504 187 NYTM---QTRR-FDLSGFLLLAVGMATLTLALDGSKGLGLSPLAIAGLVAVGVVALLLYLLHARNNNRALFSLKLFRTRT 262 (471)
T ss_pred Cccc---cCCC-CChHHHHHHHHHHHHHHHHHhcCCcCCcchHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHhcccc
Confidence 4431 1111 111110000 0000000 00000 000000 002233322
Q ss_pred hhHHHHHHHHHHhhhccchhhHhcHHHHHH-HcCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhhccchHHHHHHHHHHH
Q 047115 295 RPQLVMAILIPFQQVTRVNVISFNAPVLFM-TIKVRKSTSLLMSAVVPDGIGTVSTILPMILADKLGRTVLFLLGGIQIL 373 (522)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~ 373 (522)
.... ....+...........+.|.+++ ..|.++...+ +......++.+++.++.+++.||+|+|+.+..+..+..
T Consensus 263 ~~~~---l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g-~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~ 338 (471)
T PRK10504 263 FSLG---LAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAG-LMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLA 338 (471)
T ss_pred hHHH---HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHH
Confidence 2222 22222222333445567788876 4788888888 78888888888888999999999999999888777666
Q ss_pred HHHHHHHHHHHHhhCCCCCCcchhhHHHHHHHHHHHHhhhccccccccccccccCchhhhhHHHHHHHHHHHHHHHHHHH
Q 047115 374 VSQVMIRSIMAAQLGDHGGFNIGYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLVAQ 453 (522)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~ 453 (522)
+...++.... .....+.......+.+.+.+....+. .....+..|++.++.+.|+.++...++..+++.
T Consensus 339 ~~~~~~~~~~----------~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~ 407 (471)
T PRK10504 339 LVSLLFMLVA----------LLGWYYLLPFVLFLQGMVNSTRFSSM-NTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVT 407 (471)
T ss_pred HHHHHHHhcc----------ccccHHHHHHHHHHHHHHHHHHHHHH-HHHHHHcCCHHhccchHHHHHHHHHHHHHHHHH
Confidence 6655444321 11112222222223223333333333 355568899999999999999999999999999
Q ss_pred HHHHHHHhccc
Q 047115 454 TFLAMLCHFKA 464 (522)
Q Consensus 454 ~~~~~~~~~g~ 464 (522)
+.+.+.+..++
T Consensus 408 i~g~ll~~~g~ 418 (471)
T PRK10504 408 IAGLLLGLFGQ 418 (471)
T ss_pred HHHHHHHHhhh
Confidence 99988876653
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.2e-26 Score=232.53 Aligned_cols=364 Identities=12% Similarity=0.135 Sum_probs=241.0
Q ss_pred HhhhhhcchhhccccccHHHHHHhhhhhhhcccCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccc
Q 047115 16 GLIFGYDIGVSGGVTLMEPFLKKCFLEVYKKMKEDPKISNYGKFDSQLLAAFTSSLYIAGLIAFLFASKVTRAFGRKASI 95 (522)
Q Consensus 16 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l 95 (522)
.+..++..+...+.. |.+.+ +++|++..+.|++.+.+.++..+.+++.|+++||+||||.+
T Consensus 6 ~~~~~~~~~~~~~~l--~~~l~-----------------~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~ 66 (375)
T TIGR00899 6 AFLTGIAGALQFPTL--SLFLS-----------------EEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGL 66 (375)
T ss_pred HHHHHHHHHHHhhHH--HHHHH-----------------cccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHH
Confidence 455566666665544 44432 22378999999999999999999999999999999999876
Q ss_pred ccccccCcccchhhhhhhhhhhhhhhhcccccccchhhhhHHHHHHHhhhhhhHHHHHHHHHHHhhhhhhhccccccccc
Q 047115 96 LPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCCYSNHCSIGGAAFNIYMLILGCVLLGVGIGFTSQSIQRFNQF 175 (522)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~ 175 (522)
+ ..+..+..++.++++++++++.+++.|+++|.+.+...|....+
T Consensus 67 ~--------------------------------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~p~~~~~--- 111 (375)
T TIGR00899 67 I--------------------------------LFCCLLAALACLLFAWNRNYFLLLVLGVLLSSFASTANPQLFAL--- 111 (375)
T ss_pred H--------------------------------HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhhhhhHHHHHHH---
Confidence 5 04556666777888899999999999999998888777777777
Q ss_pred cccccccccccCCcc-hhH--HHHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHhhHHHHHHHHH-HhcccCCChHH
Q 047115 176 AYMILLSSNFETTRL-SHI--DFLLQISICYLILSANLLNYGTQKIKGSWGWRISLAMAAVPASILTI-GSLFLPETPNS 251 (522)
Q Consensus 176 ~~~~~i~~~~~~~~~-g~~--~~~~~~~~~lG~~~~~~~~~~l~~~~~~~gwr~~f~i~~~~~~~~~~-~~~~lpesp~~ 251 (522)
..| +.++++ ++. .+....+.++|.++++.+++.+.+. .|||+.|++.++..++..+ ..+++||+|+.
T Consensus 112 -----~~~-~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~---~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 182 (375)
T TIGR00899 112 -----ARE-HADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALG---FGFTVMFLTAALAFVLCGVLVWLFLPSYPRG 182 (375)
T ss_pred -----HHH-HhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHh---cccHHHHHHHHHHHHHHHHHHHHhCCCcccC
Confidence 888 776655 543 5778888899999999998888744 4899999998776655444 34557887642
Q ss_pred HHHhCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHHhhccccchhHHHHHHHHHHhhhccchhhHhcHHHHH-HHcCCCC
Q 047115 252 IIQRNKDHQKAEEILQIVRNTTDVKAELDDIIRASSKIIHRIYRPQLVMAILIPFQQVTRVNVISFNAPVLF-MTIKVRK 330 (522)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~ 330 (522)
. ++ .++ + .+.+ +.++++..+......... .........+.|.++ ++.|.+.
T Consensus 183 ~---~~-~~~-~-------------~~~~-------~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~g~~~ 234 (375)
T TIGR00899 183 A---PG-ALT-R-------------LEVR-------GLLASRDTRLLFVACTLM---WGCNILYIINMPLLIIHELGLPD 234 (375)
T ss_pred c---cc-ccC-c-------------chhh-------hhhcCcchHHHHHHHHHH---HHHHHHHHhhhHHHHHHHcCCCH
Confidence 1 11 000 0 0000 122222233222222222 111222344556666 5678888
Q ss_pred chhhHHHhHHHHHHHHHHHHhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcchhhHHHHHHHHHHHH
Q 047115 331 STSLLMSAVVPDGIGTVSTILPMILADKLGRTVLFLLGGIQILVSQVMIRSIMAAQLGDHGGFNIGYAYLILFLICVYKA 410 (522)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (522)
.+.+ .......+...++.++.+++.||++||+.+..+.....+....+... +..+.......+.+.
T Consensus 235 ~~~g-~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~g~ 300 (375)
T TIGR00899 235 KLAG-LMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAAD-------------NSLWALLMLQLLNAI 300 (375)
T ss_pred HHHH-HHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHH
Confidence 8887 66666677778888999999999999998877655444333222221 122233333333333
Q ss_pred hhhccccccccccccccCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHhhcc
Q 047115 411 GFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLVAQTFLAMLCHFKAGVFFCFGGWVAFMTTFVHFFLP 486 (522)
Q Consensus 411 ~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~ 486 (522)
+.+.. .+....+..|..|+ +++++.++.+...+++..++|.+.+.+.+..++...+...++..+.+.+...+++
T Consensus 301 ~~g~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 374 (375)
T TIGR00899 301 FIGIL-AGIGMLYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCLLLIK 374 (375)
T ss_pred HHHHH-HHHHHHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHheec
Confidence 33322 23444566788876 5679999999999999999999999999988865544444444455554444443
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-25 Score=231.83 Aligned_cols=328 Identities=13% Similarity=0.101 Sum_probs=223.1
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhhhhHH
Q 047115 58 KFDSQLLAAFTSSLYIAGLIAFLFASKVTRAFGRKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCCYSN 137 (522)
Q Consensus 58 ~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 137 (522)
|+|..+.|++.+.+.+++.++++++|+++||+|||++++ .+.++..+
T Consensus 47 g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~---------------------------------~~~~~~~~ 93 (392)
T PRK12382 47 GFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSAL---------------------------------QGMLACGL 93 (392)
T ss_pred CCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHH---------------------------------HHHHHHHH
Confidence 789999999999999999999999999999999999999 77777666
Q ss_pred HHHHH---h-----hhhhhHHHHHHHHHHHhhhhhhhccccccccccccccccccccCCcc-hhHHHHHHHHHHHHHHHH
Q 047115 138 HCSIG---G-----AAFNIYMLILGCVLLGVGIGFTSQSIQRFNQFAYMILLSSNFETTRL-SHIDFLLQISICYLILSA 208 (522)
Q Consensus 138 ~~~~~---~-----~a~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~-g~~~~~~~~~~~lG~~~~ 208 (522)
+.+.. + ..++++.++++|+++|++.+...+...++ +.| +.|+++ ++++++.+.+...|..++
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~--------~~~-~~~~~~r~~a~~~~~~~~~~g~~~g 164 (392)
T PRK12382 94 AGLAYLLAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTW--------GLG-LVGPKHSGKVMSWNGMAMYGALAAG 164 (392)
T ss_pred HHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHh-hCCccccchhhhHHHHHHHHHHHHH
Confidence 54432 1 13578999999999999999888888888 899 888888 999999999999999999
Q ss_pred HHHHhhhhccCCCCchHHHHHhhHHHHHHHHHHhcccCCChHHHHHhCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHHh
Q 047115 209 NLLNYGTQKIKGSWGWRISLAMAAVPASILTIGSLFLPETPNSIIQRNKDHQKAEEILQIVRNTTDVKAELDDIIRASSK 288 (522)
Q Consensus 209 ~~~~~~l~~~~~~~gwr~~f~i~~~~~~~~~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (522)
+.++..+.+. .|||+.+.+..+..++........||.+.. +++ +++ .++. .+.
T Consensus 165 ~~~~~~l~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~-----------------~~~~---~~~ 217 (392)
T PRK12382 165 APLGLLLHSH---FGFAALALTTMVLPLLAWAFNGTVRKVPAH---AGE-RPS-----------------LWSV---VGL 217 (392)
T ss_pred HHHHHHHHhc---cChHHHHHHHHHHHHHHHHHHHhccCCCCC---ccc-Cch-----------------HHHH---HHH
Confidence 9998887644 479988776555444333333333443210 000 000 0000 001
Q ss_pred hccccchhHHHHHHHHHHhhhccchhhHhcHHHHHHHcCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhhccchHHHHHH
Q 047115 289 IIHRIYRPQLVMAILIPFQQVTRVNVISFNAPVLFMTIKVRKSTSLLMSAVVPDGIGTVSTILPMILADKLGRTVLFLLG 368 (522)
Q Consensus 289 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~ 368 (522)
.+ .... ..++. .........+.|.++++.+++. .+ .......++.+++++..+++.||+++|+.+..+
T Consensus 218 ~~----~~~~--~~~l~---~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~ 285 (392)
T PRK12382 218 IW----KPGL--GLALQ---GVGFAVIGTFVSLYFASKGWAM--AG-FTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVS 285 (392)
T ss_pred HH----HhHH--HHHHH---HHHHhHHHHHHHHHHHhcCCch--hH-HHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHH
Confidence 11 1111 11111 1122234456677777766653 34 455667778889999999999999999988877
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCCCCcchhhHHHHHHHHHHHHhhhccccccccccccccCchhhhhHHHHHHHHHHHHHH
Q 047115 369 GIQILVSQVMIRSIMAAQLGDHGGFNIGYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFT 448 (522)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~ 448 (522)
.....++.+++... +..+.......+.+.+.+... +.......|.+|+++|+++.|+.+....++.
T Consensus 286 ~~~~~~~~~~~~~~-------------~~~~~~~~~~~l~g~~~~~~~-~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~ 351 (392)
T PRK12382 286 LLVETVGLLLLWLA-------------PTAWVALAGAALTGAGCSLIF-PALGVEVVKRVPSQVRGTALGGYAAFQDIAY 351 (392)
T ss_pred HHHHHHHHHHHHHc-------------ccHHHHHHHHHHHHHHHHhHH-HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence 77666665544331 112223333334334433322 2333445688999999999999999999999
Q ss_pred HHHHHHHHHHHHhccchhhHHHHHHHHHHHHH
Q 047115 449 FLVAQTFLAMLCHFKAGVFFCFGGWVAFMTTF 480 (522)
Q Consensus 449 ~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~ 480 (522)
.++|.+.+.+.++.++...+.+.+.+.+.+.+
T Consensus 352 ~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~ 383 (392)
T PRK12382 352 GVSGPLAGMLATSFGYPSVFLAGAISAVLGII 383 (392)
T ss_pred HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence 99999999999998865544444444443333
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.5e-27 Score=242.35 Aligned_cols=368 Identities=13% Similarity=0.002 Sum_probs=242.3
Q ss_pred HhhhhhcchhhccccccHHHHHHhhhhhhhcccCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccc
Q 047115 16 GLIFGYDIGVSGGVTLMEPFLKKCFLEVYKKMKEDPKISNYGKFDSQLLAAFTSSLYIAGLIAFLFASKVTRAFGRKASI 95 (522)
Q Consensus 16 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l 95 (522)
.+...++....+... |.+.+++ |++..+.+++.+++.++..+++++.|+++||+|||+++
T Consensus 4 ~~~~~~~~~~~~~~~--~~~~~~~------------------g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~ 63 (379)
T TIGR00881 4 YAAYYLVRKNFALAM--PYLVEEI------------------GLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFL 63 (379)
T ss_pred hhHHHHhHHhhhhhh--HHHHHHh------------------CCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehh
Confidence 345556666666554 6666555 77999999999999999999999999999999999999
Q ss_pred ccccccCcccchhhhhhhhhhhhhhhhcccccccchhhhhHHHHHHHhhhhhhHHHHHHHHHHHhhhhhhhccccccccc
Q 047115 96 LPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCCYSNHCSIGGAAFNIYMLILGCVLLGVGIGFTSQSIQRFNQF 175 (522)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~ 175 (522)
. .+.++.+++.++.+++++++.+++.|++.|++.+...+....+
T Consensus 64 ~---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--- 107 (379)
T TIGR00881 64 P---------------------------------IGLILCAIVNLFFGFSTSLWVMAALWALNGIFQGMGWPPCGRT--- 107 (379)
T ss_pred H---------------------------------HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccccCCchHHH---
Confidence 9 9999999999999999999999999999999999999999988
Q ss_pred cccccccccccCCcc-hhHHHHHHHHHHHHHHHHH-HHHhhhhccCCCCchHHHHHhhHHHHHH-HHHHhcccCCChHHH
Q 047115 176 AYMILLSSNFETTRL-SHIDFLLQISICYLILSAN-LLNYGTQKIKGSWGWRISLAMAAVPASI-LTIGSLFLPETPNSI 252 (522)
Q Consensus 176 ~~~~~i~~~~~~~~~-g~~~~~~~~~~~lG~~~~~-~~~~~l~~~~~~~gwr~~f~i~~~~~~~-~~~~~~~lpesp~~~ 252 (522)
+.| +.|+++ ++..++.+.+..+|..+++ .++..+.+. .+||+.|++.++..++ .++..++.||+|+..
T Consensus 108 -----~~~-~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (379)
T TIGR00881 108 -----VTK-WFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAEL---YSWHWVFIVPGIIAIIVSLICFLLLRDSPQSC 178 (379)
T ss_pred -----HHH-hcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhc---CCchhHHHHHHHHHHHHHHHHheeeCCCcccc
Confidence 999 888887 9999999999999999999 466555533 4899999887665544 445556677766421
Q ss_pred HHhCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHHhhccccchhHHHHHHHHHHhhhccchhhHhcHHHHHH-HcCCCCc
Q 047115 253 IQRNKDHQKAEEILQIVRNTTDVKAELDDIIRASSKIIHRIYRPQLVMAILIPFQQVTRVNVISFNAPVLFM-TIKVRKS 331 (522)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~ 331 (522)
..+++ .++..+..++ ..++.+++.++.+...+++++++..+.. ....+........+..+.|.+++ ..|++..
T Consensus 179 ~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 252 (379)
T TIGR00881 179 GLPPA-EEMPNEEPDG--DAEKKEEELTKKQIFLQYVLLNKVLWYI---SLGYVFVYVVRTGILDWSPLYLTQEKGFSKE 252 (379)
T ss_pred ccCcc-ccCccccccc--ccccccccccchHHHHHHHHhcchHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH
Confidence 11110 0000000000 0000000001111111133333222222 22223333333455667787774 5699988
Q ss_pred hhhHHHhHHHHHHHHHHHHhHHHHhhhccc-hHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcchhhHHHHHHHHHHHH
Q 047115 332 TSLLMSAVVPDGIGTVSTILPMILADKLGR-TVLFLLGGIQILVSQVMIRSIMAAQLGDHGGFNIGYAYLILFLICVYKA 410 (522)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (522)
+.+ .......++.+++.++.+++.||..+ |+... ...........+..... .+....+.........+.
T Consensus 253 ~~~-~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~-~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~g~ 322 (379)
T TIGR00881 253 KAS-WAFTLYELGGLVGTLLAGWLSDKLFNGRRGPL-AVFFMALIIVSLLVYWL--------NPAANPLMDLICLFALGF 322 (379)
T ss_pred HHH-HHHHHHHHHcchhHHHHHHHHHHHcCCcchHH-HHHHHHHHHHHHHHHhc--------CcchhHHHHHHHHHHHHH
Confidence 888 88888999999999999999998643 33222 11111111111111110 011112222222222222
Q ss_pred hhhccccccccccccccCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Q 047115 411 GFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLVAQTFLAMLCHFKAG 465 (522)
Q Consensus 411 ~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~ 465 (522)
...+..+....+..|.+|++.|+++.|+.+....+++.++|.+.+.+.++.++.
T Consensus 323 -~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~ 376 (379)
T TIGR00881 323 -LVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGFGWA 376 (379)
T ss_pred -HHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhccc
Confidence 222223334456689999999999999999999999999999999999987754
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.2e-25 Score=225.14 Aligned_cols=339 Identities=18% Similarity=0.181 Sum_probs=263.0
Q ss_pred HHHHHhhhhhcchhhccccccHHHHHHhhhhhhhcccCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 047115 12 AATSGLIFGYDIGVSGGVTLMEPFLKKCFLEVYKKMKEDPKISNYGKFDSQLLAAFTSSLYIAGLIAFLFASKVTRAFGR 91 (522)
Q Consensus 12 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Gr 91 (522)
...+.+..+++....++.. |.+.+++ +.+..+.+++.+...++..+++++.|+++||+||
T Consensus 4 ~~~~~~~~~~~~~~~~~~~--~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~ 63 (352)
T cd06174 4 LFLGFFLSGLDRGLLSPAL--PLLAEDL------------------GLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGR 63 (352)
T ss_pred HHHHHHHHHHhhhhhHhhH--HHHHHHc------------------CCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCC
Confidence 3445566666666666554 5665555 5688999999999999999999999999999999
Q ss_pred ccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhhhhHHHHHHHhhhhhhHHHHHHHHHHHhhhhhhhccccc
Q 047115 92 KASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCCYSNHCSIGGAAFNIYMLILGCVLLGVGIGFTSQSIQR 171 (522)
Q Consensus 92 k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~ 171 (522)
|+.+. .+.++..++.+...++++++.+++.|++.|++.+...+....
T Consensus 64 r~~~~---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~ 110 (352)
T cd06174 64 RRVLL---------------------------------LGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAA 110 (352)
T ss_pred chhhH---------------------------------HHHHHHHHHHHHHHHhccHHHHHHHHHHHHcccccccHhHHH
Confidence 99999 999999999999999999999999999999999999999999
Q ss_pred cccccccccccccccCCcc-hhHHHHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHhhHHHHHHHHHHhcccCCChH
Q 047115 172 FNQFAYMILLSSNFETTRL-SHIDFLLQISICYLILSANLLNYGTQKIKGSWGWRISLAMAAVPASILTIGSLFLPETPN 250 (522)
Q Consensus 172 ~~~~~~~~~i~~~~~~~~~-g~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~gwr~~f~i~~~~~~~~~~~~~~lpesp~ 250 (522)
+ +.| +.|+++ ++..++.+....+|..+++.++..+.+.. +||+.+.+.++..++..+...+++
T Consensus 111 ~--------~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~---- 174 (352)
T cd06174 111 L--------IAE-WFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESL---GWRWLFLILAILGLLLALLLLFLL---- 174 (352)
T ss_pred H--------HHH-hCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 9 999 888877 99999999999999999999999887654 699999987776666555443322
Q ss_pred HHHHhCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHHhhccccchhHHHHHHHHHHhhhccchhhHhcHHHHHHHc-CCC
Q 047115 251 SIIQRNKDHQKAEEILQIVRNTTDVKAELDDIIRASSKIIHRIYRPQLVMAILIPFQQVTRVNVISFNAPVLFMTI-KVR 329 (522)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~ 329 (522)
+..+......+...........+.|.+.++. |.+
T Consensus 175 ---------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (352)
T cd06174 175 ---------------------------------------------RLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLS 209 (352)
T ss_pred ---------------------------------------------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCC
Confidence 0111112222333444455667788888765 888
Q ss_pred CchhhHHHhHHHHHHHHHHHHhHHHHhhhccchH-HHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcchhhHHHHHHHHHH
Q 047115 330 KSTSLLMSAVVPDGIGTVSTILPMILADKLGRTV-LFLLGGIQILVSQVMIRSIMAAQLGDHGGFNIGYAYLILFLICVY 408 (522)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (522)
..+.+ .......++..++.++.+++.||++||+ .+..+.....++.+.+... ...+.......+.
T Consensus 210 ~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-------------~~~~~~~~~~~~~ 275 (352)
T cd06174 210 AAEAG-LLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALA-------------PSLALLLVALLLL 275 (352)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh-------------ccHHHHHHHHHHH
Confidence 88888 8899999999999999999999999999 8888877777776665543 1123334444444
Q ss_pred HHhhhccccccccccccccCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHH
Q 047115 409 KAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLVAQTFLAMLCHFKAGVFFCFGGWVAFMTT 479 (522)
Q Consensus 409 ~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~ 479 (522)
+.+.+. ..+....+..|..|+++|++..|+.+....++..+++.+.+.+.+..++...+...++..+.+.
T Consensus 276 g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~ 345 (352)
T cd06174 276 GFGLGF-AFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAA 345 (352)
T ss_pred HHHHhc-cchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHH
Confidence 444443 3455567778999999999999999999999999999999999987775444333333333333
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.8e-25 Score=229.44 Aligned_cols=367 Identities=11% Similarity=0.012 Sum_probs=241.7
Q ss_pred HHHHHHHHhhhhhcchhhccccccHHHHHHhhhhhhhcccCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 047115 9 CIVAATSGLIFGYDIGVSGGVTLMEPFLKKCFLEVYKKMKEDPKISNYGKFDSQLLAAFTSSLYIAGLIAFLFASKVTRA 88 (522)
Q Consensus 9 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr 88 (522)
+....+..+....+.....+.. |.+.+++ +.+..+.++..+++.+++.++++++|+++||
T Consensus 18 ~~~~~~~~~~~~~~~~~~~p~l--~~i~~~~------------------~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr 77 (413)
T PRK15403 18 PMALILYDFAAYLTTDLIQPGI--INVVRDF------------------NADVSLAPASVSLYLAGGMALQWLLGPLSDR 77 (413)
T ss_pred HHHHHHHHHHHHHHHHhhccCH--HHHHHHh------------------CCCHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 3444555566666666666654 6666655 6789999999999999999999999999999
Q ss_pred hccccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhhhhHHHHHHHhhhhhhHHHHHHHHHHHhhhhhhhcc
Q 047115 89 FGRKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCCYSNHCSIGGAAFNIYMLILGCVLLGVGIGFTSQS 168 (522)
Q Consensus 89 ~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~ 168 (522)
+|||++++ .+.++++++++++.+++|++.++++|+++|++.+...+.
T Consensus 78 ~Grr~~l~---------------------------------~~~~~~~~~~~~~~~a~~~~~l~~~r~l~Gi~~~~~~~~ 124 (413)
T PRK15403 78 IGRRPVLI---------------------------------TGALIFTLACAATLFTTSMTQFLIARFIQGTSICFIATV 124 (413)
T ss_pred cCchHHHH---------------------------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999 999999999999999999999999999999999876666
Q ss_pred ccccccccccccccccccCCcc-hhHHHHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHhhHHHHHHHHHH-hcccC
Q 047115 169 IQRFNQFAYMILLSSNFETTRL-SHIDFLLQISICYLILSANLLNYGTQKIKGSWGWRISLAMAAVPASILTIG-SLFLP 246 (522)
Q Consensus 169 ~~~~~~~~~~~~i~~~~~~~~~-g~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~gwr~~f~i~~~~~~~~~~~-~~~lp 246 (522)
...+ +.| ++++++ ++++++...+..+|..+|+.+++.+.+. .|||+.|++.++..++..+. .+++|
T Consensus 125 ~~~~--------~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~---~gw~~~f~~~~~~~~i~~~~~~~~lp 192 (413)
T PRK15403 125 GYVT--------VQE-AFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHF---VHWKVLFAIIAVMGLIAFVGLLLAMP 192 (413)
T ss_pred HHHH--------HHH-hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 6667 899 888888 9999999999999999999999888744 48999999877766665443 45678
Q ss_pred CChHHHHHhCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHHhhccccchhHHHHHHHHHHhhhccchhhHhcHHHHHHH-
Q 047115 247 ETPNSIIQRNKDHQKAEEILQIVRNTTDVKAELDDIIRASSKIIHRIYRPQLVMAILIPFQQVTRVNVISFNAPVLFMT- 325 (522)
Q Consensus 247 esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 325 (522)
|+++. +++ ..+.++ ..+ ..+++++++ ..+......+........+..+.|.++++
T Consensus 193 ~~~~~---~~~-~~~~~~-------------~~~----~~~~ll~~~---~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~ 248 (413)
T PRK15403 193 ETVKR---GAV-PFSAKS-------------VLR----DFRNVFRNR---LFLTGAATLSLSYIPMMSWVAVSPVILIDA 248 (413)
T ss_pred CCccc---cCC-CCChHH-------------HHH----HHHHHHcCH---HHHHHHHHHHHHHHHHHHHHHhChHHHHHh
Confidence 87531 111 000000 011 111333332 22222222222333334455667888765
Q ss_pred cCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcchhhHHHHHHH
Q 047115 326 IKVRKSTSLLMSAVVPDGIGTVSTILPMILADKLGRTVLFLLGGIQILVSQVMIRSIMAAQLGDHGGFNIGYAYLILFLI 405 (522)
Q Consensus 326 ~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (522)
.|++..+.+ +.......+.+++..+.+++.+|..+++..........++.+++...... ..+..+...+..
T Consensus 249 ~g~s~~~~g-l~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~--------~~~~~~~~~~~~ 319 (413)
T PRK15403 249 GGMTTSQFA-WTQVPVFGAVIVANAIVARFVKDPTEPRFIWRAVPIQLVGLALLIVGNLL--------WPHVWLWSVLGT 319 (413)
T ss_pred cCCCHHHHH-HHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHH--------ccccHHHHHHHH
Confidence 489988888 77777778888888888877655444444333322333333222221100 011122223344
Q ss_pred HHHHHhhhcccccccc-ccccccCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHH
Q 047115 406 CVYKAGFAFSRGPLGW-LVPSEIFPLEIRSAGQSITVAVDLLFTFLVAQTFLAMLCHFKAGVFFCFGGWVAF 476 (522)
Q Consensus 406 ~~~~~~~~~~~~~~~~-~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i 476 (522)
+++..+.+........ ++.. ....+|++.++.+.....+...++...+++.++.....+...+.++.+
T Consensus 320 ~l~~~G~~~~~p~~~~~al~~---~~~~~G~a~a~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 388 (413)
T PRK15403 320 SLYAFGIGLIFPTLFRFTLFS---NNLPKGTVSASLNMVILMVMAVSVEIGRWLWFNGGRLPFHLLAVVAGV 388 (413)
T ss_pred HHHHHHHHHHhHHHHHHHhcc---CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 4444444443332221 2211 122468899999999988888999888888777545555554444443
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.3e-25 Score=229.99 Aligned_cols=345 Identities=14% Similarity=0.043 Sum_probs=224.4
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhhhhHH
Q 047115 58 KFDSQLLAAFTSSLYIAGLIAFLFASKVTRAFGRKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCCYSN 137 (522)
Q Consensus 58 ~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 137 (522)
|+++++.+++.+.+.+++.++++++|+++||+|||+++. .+.++.++
T Consensus 44 g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~---------------------------------~~~~~~~~ 90 (402)
T TIGR00897 44 GLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMM---------------------------------IGLLLWCV 90 (402)
T ss_pred CCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHH---------------------------------HHHHHHHH
Confidence 679999999999999999999999999999999999999 88888888
Q ss_pred HHHHHh---h-hhhhHHHHHHHHHHHhhhhhhhccccccccccccccccccccCCcc-hhHHHHHHHHHHHHH-HHHHHH
Q 047115 138 HCSIGG---A-AFNIYMLILGCVLLGVGIGFTSQSIQRFNQFAYMILLSSNFETTRL-SHIDFLLQISICYLI-LSANLL 211 (522)
Q Consensus 138 ~~~~~~---~-a~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~-g~~~~~~~~~~~lG~-~~~~~~ 211 (522)
+++++. + .++++.+++.|+++|++.+...+....+ +.+ ..++++ ++++++.+.+.++|. ++++.+
T Consensus 91 ~~~~~~~~~~~~~~~~~l~~~~~i~G~g~~~~~~~~~~~--------~~~-~~~~~~~g~~~g~~~~~~~~g~~~~g~~~ 161 (402)
T TIGR00897 91 GHAAFIVFGLGHANYPLILLFYGIRGLGYPLFAYSFLVW--------VVY-NTKQDNLSSAVGWFWAVYSIGIGVFGSYY 161 (402)
T ss_pred HHHHHHHHhccCccHHHHHHHHHHHHcchHHHHhHHHHH--------HHH-hCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 776542 3 3578888999999999998887777777 888 777777 999999999999997 578888
Q ss_pred HhhhhccCCCCchHHHHHhhHHHHHH-HHHHhcccCCChHHHHHhCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHHhhc
Q 047115 212 NYGTQKIKGSWGWRISLAMAAVPASI-LTIGSLFLPETPNSIIQRNKDHQKAEEILQIVRNTTDVKAELDDIIRASSKII 290 (522)
Q Consensus 212 ~~~l~~~~~~~gwr~~f~i~~~~~~~-~~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 290 (522)
++.+.+. .||+..++.......+ ..+..++.++.++.. ++++ +++. ++..+..++++
T Consensus 162 ~~~l~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~-----------------~~~~~~~~~~~ 219 (402)
T TIGR00897 162 SSYAIPA---FGEMNTLWSALAFVLTGGVIALFSNKDIFTPQ-HMQT-REKF-----------------SELGKAATILF 219 (402)
T ss_pred HHhcccc---cchHHHHHHHHHHHHHHHHHHHhccCCCCCcc-cccC-Ccch-----------------hhHHHHHHHHH
Confidence 7766643 3655444433222222 222233334432100 0000 0000 01111111334
Q ss_pred cccchhHHHHHHHHHHhhhccchhhHhcHHHHHHHcCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhhccchHHHH-HHH
Q 047115 291 HRIYRPQLVMAILIPFQQVTRVNVISFNAPVLFMTIKVRKSTSLLMSAVVPDGIGTVSTILPMILADKLGRTVLFL-LGG 369 (522)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~-~~~ 369 (522)
+++. .+......+...........+.|.+.++.|++..+.+ .......+++.++.+..|+++||++||+... .+.
T Consensus 220 ~~~~---~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~-~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~ 295 (402)
T TIGR00897 220 TNPN---VLLGGMVRIINTIGLFGFAVFLPMFVAELGFSTSEWL-QIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGG 295 (402)
T ss_pred cChh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHH-HHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHH
Confidence 3322 2222222333344455667788999988999998888 7778888999999999999999999888654 223
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCCCcchhhHHHHHHHHHHHHhhhccccccccccccccCchhhhhHHHHHHHHHHHHHHH
Q 047115 370 IQILVSQVMIRSIMAAQLGDHGGFNIGYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTF 449 (522)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~ 449 (522)
....++...+...... .....+.......+.+.+.+. ..+.. ....|..| ++|+++.|+.+....+++.
T Consensus 296 l~~~~~~~~l~~~~~~--------~~~~~~~~~~~~~~~G~~~~~-~~~~~-~~~~~~~~-~~~g~~~g~~~~~~~lg~~ 364 (402)
T TIGR00897 296 VGCGIFTLALYYIPQH--------FGHSFAVALIIAIALGIFLAG-YVPLA-AVFPTLAP-KHKGAAMSVLNLSAGLSAF 364 (402)
T ss_pred HHHHHHHHHHHHHHHc--------cCCcHHHHHHHHHHHHHHHHH-HHHHH-HHHHhhCc-chhHHHHHHHHHHHHHHHH
Confidence 3333332222221100 011122222333333333332 23333 33456555 6899999999999999999
Q ss_pred HHHHHHHHHHHhccc-hhhHHHHHHHHHHHHHH
Q 047115 450 LVAQTFLAMLCHFKA-GVFFCFGGWVAFMTTFV 481 (522)
Q Consensus 450 ~~~~~~~~~~~~~g~-~~~~~~~~~~~i~~~~~ 481 (522)
++|.+.+.+.+..|+ ..+++.+++.++..++.
T Consensus 365 ~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~~ 397 (402)
T TIGR00897 365 LAPAIAVLFIGFFGAIGVVWIFAALYVVSAFLT 397 (402)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHH
Confidence 999999999998884 44555554444444433
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-26 Score=245.60 Aligned_cols=373 Identities=12% Similarity=0.039 Sum_probs=263.4
Q ss_pred HHHHHHHHHhhhhhcchhhccccccHHHHHHhhhhhhhcccCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 047115 8 SCIVAATSGLIFGYDIGVSGGVTLMEPFLKKCFLEVYKKMKEDPKISNYGKFDSQLLAAFTSSLYIAGLIAFLFASKVTR 87 (522)
Q Consensus 8 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d 87 (522)
..+.+.++.++..+|.+..+... |.+.+++ |.+..+.+++.+.+.++..++.++.|+++|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~--p~~~~~~------------------g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d 62 (485)
T TIGR00711 3 LTIVLMLGTFMAVLDSTIVNVAI--PTIAGDL------------------GSSLSQVQWVITSYMLANAISIPLTGWLAK 62 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHhc------------------CCChhhhhHHHHHHHHHHHHHHHhHHHHHH
Confidence 45566778888999999888665 6666666 678899999999999999999999999999
Q ss_pred hhccccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhhhhHHHHHHHhhhhhhHHHHHHHHHHHhhhhhhhc
Q 047115 88 AFGRKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCCYSNHCSIGGAAFNIYMLILGCVLLGVGIGFTSQ 167 (522)
Q Consensus 88 r~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~ 167 (522)
|+|||++++ .+.++.+++++++++++|++.++++|+++|++.+...+
T Consensus 63 r~g~r~~~~---------------------------------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~ 109 (485)
T TIGR00711 63 RFGTRRLFL---------------------------------ISTFAFTLGSLLCGVAPNLELMIIFRVIQGFGGGPLIP 109 (485)
T ss_pred HhCcHHHHH---------------------------------HHHHHHHHHHHHHhCcCCHHHHHHHHHHHHhhhhhHHH
Confidence 999999999 99999999999999999999999999999999999999
Q ss_pred cccccccccccccccccccCCcc-hhHHHHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHhhHHHHHHHHH-Hhccc
Q 047115 168 SIQRFNQFAYMILLSSNFETTRL-SHIDFLLQISICYLILSANLLNYGTQKIKGSWGWRISLAMAAVPASILTI-GSLFL 245 (522)
Q Consensus 168 ~~~~~~~~~~~~~i~~~~~~~~~-g~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~gwr~~f~i~~~~~~~~~~-~~~~l 245 (522)
....+ +.| ++|+++ +++.++...+..+|..+++.+++.+.+. ++||+.|++.+...++..+ ..+++
T Consensus 110 ~~~~~--------i~~-~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~---~~w~~~f~~~~~~~~~~~~~~~~~~ 177 (485)
T TIGR00711 110 LSFST--------LLN-IYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIEN---YHWRWIFLINVPIGIIVVVVAFFIL 177 (485)
T ss_pred HHHHH--------HHH-HCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccC---cCceehhhhhhHHHHHHHHHHHHHc
Confidence 99999 999 888888 9999999999999999999999888743 5899999987666555433 34456
Q ss_pred CCChHHHHHhCCCHHHHHHHH---------HH-HcCC-cc--hHHHH----------------HHHHHH----HHhhccc
Q 047115 246 PETPNSIIQRNKDHQKAEEIL---------QI-VRNT-TD--VKAEL----------------DDIIRA----SSKIIHR 292 (522)
Q Consensus 246 pesp~~~~~~~~~~~~~~~~~---------~~-~~~~-~~--~~~~~----------------~~~~~~----~~~l~~~ 292 (522)
||+++. ++++ .+...... .. .+++ .+ .+.+. .+.+++ ..+++++
T Consensus 178 ~~~~~~--~~~~-~d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (485)
T TIGR00711 178 PRDKPA--ASEN-FDFLGLLLLSVGLGSLLYGLSEGPERGWFDSNEILILSITGLVAIIAFVVWELTDDNPLVDLRLFKY 254 (485)
T ss_pred CCcccc--ccCC-CcHHHHHHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHcCCCCccCHHHHcC
Confidence 664421 1111 11111000 00 0000 00 00000 000000 0022332
Q ss_pred cchhHHHHHHHHHHhhhccchhhHhcHHHHHHH-cCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhhccchHHHHHHHHH
Q 047115 293 IYRPQLVMAILIPFQQVTRVNVISFNAPVLFMT-IKVRKSTSLLMSAVVPDGIGTVSTILPMILADKLGRTVLFLLGGIQ 371 (522)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~ 371 (522)
+.... .....+...........+.|.++++ .|+++.+.+ .......++.+++.++.+++.||++||+.+..+..+
T Consensus 255 ~~~~~---~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g-~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~ 330 (485)
T TIGR00711 255 RNFTI---GCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAG-LHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLIL 330 (485)
T ss_pred CChHH---HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHH
Confidence 22222 2222232333334456678888865 699999998 888889999999999999999999999998887777
Q ss_pred HHHHHHHHHHHHHHhhCCCCCCcchhhHHHHHHHHHHHHhhhccccccccccccccCchhhhhHHHHHHHHHHHHHHHHH
Q 047115 372 ILVSQVMIRSIMAAQLGDHGGFNIGYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLV 451 (522)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~ 451 (522)
..++..++.... . +....+.......+.+.+.+....+... ...+..|+++|+++.|+.+....+++.++
T Consensus 331 ~~~~~~~~~~~~--------~-~~~~~~~~~~~~~l~g~g~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~g~~ig 400 (485)
T TIGR00711 331 YAVGFYWRAFTF--------T-PDTPFLAIALPQFIRGFGMGCFFMPLTT-IALSGLPPHKIARGSSLSNFTRQLGGSIG 400 (485)
T ss_pred HHHHHHHHhccC--------C-CCCCHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCCHHHHhHHHHHHHHHHHHHHHHH
Confidence 666665544211 0 1112222333334444444443334433 33577899999999999999999999999
Q ss_pred HHHHHHHHHhc
Q 047115 452 AQTFLAMLCHF 462 (522)
Q Consensus 452 ~~~~~~~~~~~ 462 (522)
+.+.+.+.++.
T Consensus 401 ~~i~g~~~~~~ 411 (485)
T TIGR00711 401 TALITTILTNR 411 (485)
T ss_pred HHHHHHHHHHH
Confidence 99999888753
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.8e-25 Score=227.96 Aligned_cols=321 Identities=13% Similarity=0.056 Sum_probs=225.4
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhhhhHH
Q 047115 58 KFDSQLLAAFTSSLYIAGLIAFLFASKVTRAFGRKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCCYSN 137 (522)
Q Consensus 58 ~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 137 (522)
|+++++.+++.+++.++..++++++|+++||+|||+++. .+..+.++
T Consensus 37 ~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~---------------------------------~~~~~~~~ 83 (401)
T PRK11043 37 QTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLL---------------------------------AGLSLFAL 83 (401)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHH---------------------------------HHHHHHHH
Confidence 779999999999999999999999999999999999999 99999999
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHhhhhhhhccccccccccccccccccccCCcc-hhHHHHHHHHHHHHHHHHHHHHhhhh
Q 047115 138 HCSIGGAAFNIYMLILGCVLLGVGIGFTSQSIQRFNQFAYMILLSSNFETTRL-SHIDFLLQISICYLILSANLLNYGTQ 216 (522)
Q Consensus 138 ~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~-g~~~~~~~~~~~lG~~~~~~~~~~l~ 216 (522)
+.+++.++++++.+++.|+++|++.+...+....+ +.| ++++++ ++..+.......+|..+++.+++.+.
T Consensus 84 ~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~--------~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~ 154 (401)
T PRK11043 84 GSLGMLWVESAAQLLVLRFVQAVGVCSAAVIWQAL--------VID-RYPAQKANRVFATIMPLVALSPALAPLLGAWLL 154 (401)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHhhhHHHHHHHHHH--------HHH-hcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988887777777 899 888888 88999988889999999999988877
Q ss_pred ccCCCCchHHHHHhhHHHHHHHHHHhcccCCChHHHHHhCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHHhhccccchh
Q 047115 217 KIKGSWGWRISLAMAAVPASILTIGSLFLPETPNSIIQRNKDHQKAEEILQIVRNTTDVKAELDDIIRASSKIIHRIYRP 296 (522)
Q Consensus 217 ~~~~~~gwr~~f~i~~~~~~~~~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 296 (522)
+. .|||+.|++.++..++..+..++++|+++. ++ .++.++. . ++.++++..+
T Consensus 155 ~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~-------------~-------~~~~~~~~~~ 206 (401)
T PRK11043 155 NH---FGWQAIFATLFAITLLLILPTLRLKPSKKA----RK-QSQDALT-------------F-------KQLLKSKTYL 206 (401)
T ss_pred hc---CChHHHHHHHHHHHHHHHHHHHHcCCCCCc----cc-cchHHHH-------------H-------HHHHcChhHH
Confidence 44 489999988777666655555555554321 11 1100000 0 1223222222
Q ss_pred HHHHHHHHHHhhhccchhhHhcHHHHHHHcCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhhccchHHHHHHHHHHHHHH
Q 047115 297 QLVMAILIPFQQVTRVNVISFNAPVLFMTIKVRKSTSLLMSAVVPDGIGTVSTILPMILADKLGRTVLFLLGGIQILVSQ 376 (522)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~ 376 (522)
........ ..........+.|.++++.|++..+.+ .......++.+++.+..+++.||+++|+..........++.
T Consensus 207 ~~~~~~~~---~~~~~~~~~~~~p~~~~~~g~s~~~~g-~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~ 282 (401)
T PRK11043 207 GNVLIFAA---CSAAFFAWLTGSPFILEQMGYSPADIG-LSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSV 282 (401)
T ss_pred HHHHHHHH---HHHHHHHHHHHhHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHH
Confidence 21111111 111223345667888888899988888 77777788889999999999999999987665555544443
Q ss_pred HHHHHHHHHhhCCCCCCcchhhHHHHHHHHHHHHhhhccccccccccccccCchhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 047115 377 VMIRSIMAAQLGDHGGFNIGYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLVAQTFL 456 (522)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~ 456 (522)
+.+...... .....+..+...++...+.+... +.......|..| ++++++.|+.+..+..++..++.+.+
T Consensus 283 ~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g 352 (401)
T PRK11043 283 IAIWLASLL--------SHPSLVPLLIPFCVMAAANGAIY-PIVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLVS 352 (401)
T ss_pred HHHHHHHHh--------ccCcHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHH
Confidence 333222110 11112222333333333333322 333334345566 57999999999999999999999998
Q ss_pred HHHHhc
Q 047115 457 AMLCHF 462 (522)
Q Consensus 457 ~~~~~~ 462 (522)
.+.+..
T Consensus 353 ~l~~~~ 358 (401)
T PRK11043 353 ALISTP 358 (401)
T ss_pred HccCCC
Confidence 887643
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.5e-27 Score=232.13 Aligned_cols=367 Identities=14% Similarity=0.115 Sum_probs=250.6
Q ss_pred HHHHHHHHHHHHhhhhhcchhhccccccHHHHHHhhhhhhhcccCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 047115 5 IVLSCIVAATSGLIFGYDIGVSGGVTLMEPFLKKCFLEVYKKMKEDPKISNYGKFDSQLLAAFTSSLYIAGLIAFLFASK 84 (522)
Q Consensus 5 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~ 84 (522)
.+..+++.++.++++..|...+.++. +. +++++|++++..|++.+.+.+.+.+.+|++|+
T Consensus 31 ~~~~l~il~~vnlmny~Dr~~iagv~--~~------------------v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gy 90 (493)
T KOG1330|consen 31 PTLTLVILCLVNLMNYADRYTIAGVL--KE------------------VQTYFNISDSELGLLQTVFIVVFMIASPLFGY 90 (493)
T ss_pred chHHHHHHHHHHHHHHhhhhhhhhhh--HH------------------HHHhcCCCchhccchhHHHHHHHHHHHHHHHH
Confidence 35667788888999999999988765 33 34455899999999999999999999999999
Q ss_pred hhhhhccccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhhhhHHHHHHHhhhhhhHHHHHHHHHHHhhhhh
Q 047115 85 VTRAFGRKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCCYSNHCSIGGAAFNIYMLILGCVLLGVGIGF 164 (522)
Q Consensus 85 l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~l~~~r~l~G~~~g~ 164 (522)
++|||+||+++. .|..+|.++.+++++++.+|++.++|.+.|+|.+.
T Consensus 91 LadryNR~~v~~---------------------------------vG~~iW~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs 137 (493)
T KOG1330|consen 91 LADRYNRKRVIA---------------------------------VGIFIWTLAVFASGFSNHFWQVLLCRGFVGIGEAS 137 (493)
T ss_pred HHhhcCcceEEe---------------------------------eHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhh
Confidence 999999999999 99999999999999999999999999999999999
Q ss_pred hhccccccccccccccccccccCCcc-hhHHHHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHhhHHHHHHHHH-Hh
Q 047115 165 TSQSIQRFNQFAYMILLSSNFETTRL-SHIDFLLQISICYLILSANLLNYGTQKIKGSWGWRISLAMAAVPASILTI-GS 242 (522)
Q Consensus 165 ~~~~~~~~~~~~~~~~i~~~~~~~~~-g~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~gwr~~f~i~~~~~~~~~~-~~ 242 (522)
..+.++.+ ++| .+|+.+ ++.+++++.+..+|..+|.+++..+.+... .|||.|...+++.++..+ ..
T Consensus 138 ~~~ia~s~--------IaD-~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~--~Wr~af~~~avl~vi~~~L~~ 206 (493)
T KOG1330|consen 138 YSPIAPSL--------IAD-SFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTF--WWRWAFRGSAVLGVIVGLLVF 206 (493)
T ss_pred hcccchhH--------hhh-cCcchhhhHHHHHhhhhcccccceeEEeeeeeccCcc--ceEEEEEeehHHHHHHHHHHH
Confidence 99999999 999 999888 999999999999999999999988887764 399999998887776554 45
Q ss_pred cccCCChHHHHHhCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHHhhccccchhHHHHHHHHH-HhhhccchhhHhcHHH
Q 047115 243 LFLPETPNSIIQRNKDHQKAEEILQIVRNTTDVKAELDDIIRASSKIIHRIYRPQLVMAILIP-FQQVTRVNVISFNAPV 321 (522)
Q Consensus 243 ~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 321 (522)
++.+|++|- . .++.++.. ....+.....+|++ .+.+.+......+.+... +.. ..+..+.|.
T Consensus 207 ~f~~eP~rg-----a-~~~~~~~~---~~~~~~ts~~kDl~----~l~~~~v~v~~sl~~~a~~fv~----Gs~sww~p~ 269 (493)
T KOG1330|consen 207 LFVREPERG-----A-RDEVDGEN---KMVKPFTSVWKDLK----VLAKIKVFVLSSLGIIAAQFVI----GSLSWWAPA 269 (493)
T ss_pred hhccCcccc-----c-ccccccCC---cCCCCccchHHHHH----HHHccCceeeehHHHHHHHHhc----cccchhhhh
Confidence 666775431 1 11111100 00011222223322 222212111112222222 221 223444554
Q ss_pred HH----HHcCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhhccch----HHHHH----HHHHHHHHHHHHHHHHHHhhCC
Q 047115 322 LF----MTIKVRKSTSLLMSAVVPDGIGTVSTILPMILADKLGRT----VLFLL----GGIQILVSQVMIRSIMAAQLGD 389 (522)
Q Consensus 322 ~~----~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~----~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 389 (522)
+. +-.|++.+... +...+...++.+|.+.+|.++||+.|+ ..... +......+...+......
T Consensus 270 ~~~~~~~~~~~~~~~~~-ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~~~~---- 344 (493)
T KOG1330|consen 270 FIYYSYELIGFDHNATL-IFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFLFPAF---- 344 (493)
T ss_pred HHHHHHHHhCCccccch-hhhhHHHhhchhhheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHHHHHhh----
Confidence 43 34477777777 888899999999999999999995332 11111 111112222111111110
Q ss_pred CCCCcchhhHHHHHHHHHHHHhhhccccccccccccccCchhhhhHHHHHHHHHHHHHHHHHHH-HHHHHHHhc
Q 047115 390 HGGFNIGYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLVAQ-TFLAMLCHF 462 (522)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~ 462 (522)
.....+..++++.+........+++..... .|+.|++.|.++.++...+..+.+-.+++ +.|.+.|+.
T Consensus 345 ----~~~s~~~~~il~~~g~~~~~~~~a~n~~i~-l~vV~p~~Rt~a~a~~~~~~h~fgd~~~p~ivGilsd~l 413 (493)
T KOG1330|consen 345 ----TSSSMIFGLILFLVGETISWFNWATNNPIF-LEVVPPSRRTTAYALDTVFEHIFGDAASPYIVGILSDKL 413 (493)
T ss_pred ----hhHHHHHHHHHHHHHHHHHhccccccccee-eEecCcccccHHHHHHHHHHHHhccCCCcceehhHHHHh
Confidence 122333333333333333333445444344 69999999999999988887765555544 889988865
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-24 Score=224.76 Aligned_cols=347 Identities=14% Similarity=0.058 Sum_probs=236.8
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhhhh
Q 047115 56 YGKFDSQLLAAFTSSLYIAGLIAFLFASKVTRAFGRKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCCY 135 (522)
Q Consensus 56 ~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 135 (522)
++|+|++|.+++.+++.+++.++.++.|++.||+|+|+++. ++.+++
T Consensus 64 ~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~---------------------------------~~~ll~ 110 (462)
T PRK15034 64 GFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTV---------------------------------FSTAIL 110 (462)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHH---------------------------------HHHHHH
Confidence 34899999999999999999999999999999999999999 999999
Q ss_pred HHHHHHHhhh-----hhhHHHHHHHHHHHhhhhhhhccccccccccccccccccccCCcc-hhHHHHHHHHHHHHHHHHH
Q 047115 136 SNHCSIGGAA-----FNIYMLILGCVLLGVGIGFTSQSIQRFNQFAYMILLSSNFETTRL-SHIDFLLQISICYLILSAN 209 (522)
Q Consensus 136 ~~~~~~~~~a-----~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~-g~~~~~~~~~~~lG~~~~~ 209 (522)
++.++..+++ ++++.+++.|++.|++ |..++..... +++ ++|+++ |+++++.....++|..+++
T Consensus 111 ~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~--------vs~-wfp~~~rG~A~Gi~~g~G~~G~~l~~ 180 (462)
T PRK15034 111 IIPCVWLGIAVQNPNTPFGIFIVIALLCGFA-GANFASSMGN--------ISF-FFPKAKQGSALGINGGLGNLGVSVMQ 180 (462)
T ss_pred HHHHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHHHHHH--------HHH-HCCHhHhHHHHHHHHHHHhhHHHHHH
Confidence 9999999887 8999999999999998 6688888888 999 899888 9999999766666666555
Q ss_pred HHHhhhh-----cc----------CCCCchHHHHHhhHHHHHHHHHHhc-ccCCChHHHHHhCCCHHHHHHHHHHHcCCc
Q 047115 210 LLNYGTQ-----KI----------KGSWGWRISLAMAAVPASILTIGSL-FLPETPNSIIQRNKDHQKAEEILQIVRNTT 273 (522)
Q Consensus 210 ~~~~~l~-----~~----------~~~~gwr~~f~i~~~~~~~~~~~~~-~lpesp~~~~~~~~~~~~~~~~~~~~~~~~ 273 (522)
++...+. .. .+..+||...++.++..++..+..+ +.++.|. ++.+ .++..
T Consensus 181 ~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~~---~~~~-~~~~~---------- 246 (462)
T PRK15034 181 LVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDIAS---SRAS-IADQL---------- 246 (462)
T ss_pred HHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCccc---cccC-HHHHH----------
Confidence 4443221 10 1134588877776666555544443 3443321 1111 11110
Q ss_pred chHHHHHHHHHHHHhhccccchhHHHHHHHHHHhhhccchhhHhcHHHHHHHcCCCCchhhHHHhHHHHHHHHHHHHhHH
Q 047115 274 DVKAELDDIIRASSKIIHRIYRPQLVMAILIPFQQVTRVNVISFNAPVLFMTIKVRKSTSLLMSAVVPDGIGTVSTILPM 353 (522)
Q Consensus 274 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g 353 (522)
+.+|+ +.+++...++++.+..+..++.+.|.+.++ .++..... .......+.+.+.++++|
T Consensus 247 --------------~vlk~---~~~Wllslly~~tFG~fvg~s~~lp~~~~~-~~~~~~~l-~~~~l~~l~~~l~rplgG 307 (462)
T PRK15034 247 --------------PVLQR---LHLWLLSLLYLATFGSFIGFSAGFAMLAKT-QFPDVNIL-RLAFFGPFIGAIARSVGG 307 (462)
T ss_pred --------------HHhCC---CchhHHHHHHHHHHHHHHHHHHHHHHHHHH-HcChHHHH-HHHHHHHHHHHHHHHhhH
Confidence 22333 334444555566666666677888988765 34433333 334556788889999999
Q ss_pred HHhhhccchHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcchhhHHHHHHHHHHHHhhhccccccccccccccCch---
Q 047115 354 ILADKLGRTVLFLLGGIQILVSQVMIRSIMAAQLGDHGGFNIGYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFPL--- 430 (522)
Q Consensus 354 ~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~--- 430 (522)
+++||+|+|+++.++.+.+.++...+..... .......+.............+.+.+.+. -++.+.+|+
T Consensus 308 ~LADRiG~~~vl~~~~i~~~i~~~~~~l~lp-------~~~~~~~~~~~~~~~~l~~~~G~gngsvf-k~ip~~f~~~~~ 379 (462)
T PRK15034 308 AISDKFGGVRVTLINFIFMAIFSALLFLTLP-------GTGSGNFIAFYAVFMGLFLTAGLGSGSTF-QMIAVIFRQITI 379 (462)
T ss_pred HHHHhcCchHHHHHHHHHHHHHHHHHHHHhc-------cccccHHHHHHHHHHHHHHHhcccchHHH-HhhHHHHhhhhh
Confidence 9999999999999888777666544333220 00112223333333332334444433333 333566663
Q ss_pred ------------------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--hhhHHHHHHHHHHHHHHHhhcc
Q 047115 431 ------------------EIRSAGQSITVAVDLLFTFLVAQTFLAMLCHFKA--GVFFCFGGWVAFMTTFVHFFLP 486 (522)
Q Consensus 431 ------------------~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~--~~~~~~~~~~~i~~~~~~~~~~ 486 (522)
++-|.+.|+..+.+.+|+++.|..++...+..|. ..+..+.+..+++.++.+.++.
T Consensus 380 ~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~y~ 455 (462)
T PRK15034 380 YRVKMKGGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWLVYG 455 (462)
T ss_pred hcccccccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHhc
Confidence 1567889999999999999999999999888762 3466666666777777776654
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.7e-24 Score=223.76 Aligned_cols=318 Identities=15% Similarity=0.158 Sum_probs=216.3
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhhhhHH
Q 047115 58 KFDSQLLAAFTSSLYIAGLIAFLFASKVTRAFGRKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCCYSN 137 (522)
Q Consensus 58 ~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 137 (522)
|.+..+.++..+.+.++..+++++.|+++||+|||+.++ .+.++.++
T Consensus 34 ~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~---------------------------------~~~~~~~i 80 (392)
T PRK10473 34 NASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAI---------------------------------PGAALFII 80 (392)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHH---------------------------------HHHHHHHH
Confidence 679999999999999999999999999999999999999 99999999
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHhhhhhhhccccccccccccccccccccCCcc-hhHHHHHHHHHHHHHHHHHHHHhhhh
Q 047115 138 HCSIGGAAFNIYMLILGCVLLGVGIGFTSQSIQRFNQFAYMILLSSNFETTRL-SHIDFLLQISICYLILSANLLNYGTQ 216 (522)
Q Consensus 138 ~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~-g~~~~~~~~~~~lG~~~~~~~~~~l~ 216 (522)
+.+++.++++++.+++.|+++|++.+...+....+ +.| ++++++ ++..++.+....+|..+++.+++.+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~--------i~~-~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~ 151 (392)
T PRK10473 81 ASLLCSLAETSSLFLAGRFLQGIGAGCCYVVAFAI--------LRD-TLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIM 151 (392)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHhhhhHHHHHHHHH--------HHH-HcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988888888 999 888888 99999999999999999999988776
Q ss_pred ccCCCCchHHHHHhhHHHHHHHH-HHhcccCCChHHHHHhCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHHhhccccch
Q 047115 217 KIKGSWGWRISLAMAAVPASILT-IGSLFLPETPNSIIQRNKDHQKAEEILQIVRNTTDVKAELDDIIRASSKIIHRIYR 295 (522)
Q Consensus 217 ~~~~~~gwr~~f~i~~~~~~~~~-~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 295 (522)
+. .+||+.|++.++..++.. +..+++||+++. ++++ .++. .++.+ +.++++..
T Consensus 152 ~~---~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~--~~~~-~~~~-------------~~~~~-------~~~~~~~~ 205 (392)
T PRK10473 152 LK---FPWQSLFYTMAAMGILVLLLSLFILKETRPA--RAPA-ASSK-------------PRENS-------ESLLNRFF 205 (392)
T ss_pred hC---cChHHHHHHHHHHHHHHHHHHHHHcCCCCCc--ccCC-ccch-------------HHHHH-------HHHhCHHH
Confidence 43 489999988766555443 344566776421 0011 0000 00000 22222211
Q ss_pred hHHHHHHHHHHhhhccchhhHhcHHHHH-HHcCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhhccchHHHHHHHHHHHH
Q 047115 296 PQLVMAILIPFQQVTRVNVISFNAPVLF-MTIKVRKSTSLLMSAVVPDGIGTVSTILPMILADKLGRTVLFLLGGIQILV 374 (522)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~ 374 (522)
........+. .........+.|.++ ++.|++..+.+ .......++.+++.++.+++.||++||+....+.....+
T Consensus 206 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~ 281 (392)
T PRK10473 206 LSRLVITTLS---VTVILTFVNTSPVLLMEQMGFSRGEYA-IIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLA 281 (392)
T ss_pred HHHHHHHHHH---HHHHHHHHHhCHHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 1111111111 111122334456555 46699888888 788888999999999999999999999998888777766
Q ss_pred HHHHHHHHHHHhhCCCCCCcchhhHHHHHHHHHHHHhhhccccccccccccccCchhhhhHHHHHHHHHHHHHHHHHHHH
Q 047115 375 SQVMIRSIMAAQLGDHGGFNIGYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLVAQT 454 (522)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~ 454 (522)
+.+.+.... . .+.......+...+++.+... ....+..|.+.|+ |.......++..+++.+
T Consensus 282 ~~~~~~~~~------------~-~~~~~~~~~l~~~g~~~~~~~---~~~~~~~~~~~~~---g~~~~~~~~~~~~g~~~ 342 (392)
T PRK10473 282 AGITLALSP------------S-HAVSLFGITLICAGFSVGFGV---AMSQALGPFSLRA---GVASSTLGIAQVCGSSL 342 (392)
T ss_pred HHHHHHHHH------------H-HHHHHHHHHHHHHHHHHHhHH---HHHHHhccCcccc---cHHHHHHHHHHHHHHHH
Confidence 665555432 1 112222222222333322221 1223444544443 33444455666777777
Q ss_pred HHHHHHhccchh
Q 047115 455 FLAMLCHFKAGV 466 (522)
Q Consensus 455 ~~~~~~~~g~~~ 466 (522)
.+.+.++.++..
T Consensus 343 ~~~l~~~~g~~~ 354 (392)
T PRK10473 343 WIWLAAVLGISA 354 (392)
T ss_pred HHHHHHHhccch
Confidence 777777776543
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.6e-25 Score=224.17 Aligned_cols=317 Identities=13% Similarity=0.110 Sum_probs=217.3
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhhhhHH
Q 047115 58 KFDSQLLAAFTSSLYIAGLIAFLFASKVTRAFGRKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCCYSN 137 (522)
Q Consensus 58 ~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 137 (522)
|+++++.+++.+.+.++..++.+++|+++||+|||+++. .+.++.++
T Consensus 22 ~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~---------------------------------~~~~~~~i 68 (377)
T PRK11102 22 GVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVIL---------------------------------GGTLVFAL 68 (377)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHH---------------------------------HHHHHHHH
Confidence 789999999999999999999999999999999999999 99999999
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHhhhhhhhccccccccccccccccccccCCcc-hhHHHHHHHHHHHHHHHHHHHHhhhh
Q 047115 138 HCSIGGAAFNIYMLILGCVLLGVGIGFTSQSIQRFNQFAYMILLSSNFETTRL-SHIDFLLQISICYLILSANLLNYGTQ 216 (522)
Q Consensus 138 ~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~-g~~~~~~~~~~~lG~~~~~~~~~~l~ 216 (522)
+.+.+.++++++.+++.|+++|++.+...+....+ +.| ++|+++ ++.+++.+.+..+|..+++.+++.+.
T Consensus 69 ~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~--------~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~ 139 (377)
T PRK11102 69 AAVACALAQTIDQLIYMRFLHGLAAAAASVVINAL--------MRD-MFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLL 139 (377)
T ss_pred HHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHH--------HHH-hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998888888 999 888888 99999999999999999999988887
Q ss_pred ccCCCCchHHHHHhhHHHHHHH-HHHhcccCCChHHHHHhCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHHhhccccch
Q 047115 217 KIKGSWGWRISLAMAAVPASIL-TIGSLFLPETPNSIIQRNKDHQKAEEILQIVRNTTDVKAELDDIIRASSKIIHRIYR 295 (522)
Q Consensus 217 ~~~~~~gwr~~f~i~~~~~~~~-~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 295 (522)
+. .+||+.|++.++..++. +...+++||+++. ++++ +.+ .++..+ ...+.++++.
T Consensus 140 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~-------------~~~~~~----~~~~~~~~~~- 195 (377)
T PRK11102 140 VW---FSWHAIFWVLALAAILAAALVFFFIPETLPK--ERRQ-PFH-------------LRTTIR----NFASLFRHKR- 195 (377)
T ss_pred HH---cChHHHHHHHHHHHHHHHHHHHHhCCccCcc--cccC-CCC-------------hHHHHH----HHHHHHcChH-
Confidence 54 37999998876665554 3444567775421 0000 000 000111 1113333322
Q ss_pred hHHHHHHHHHHhhhccchhhHhcHHHHH-HHcCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhhccchHHHHHHHHHHHH
Q 047115 296 PQLVMAILIPFQQVTRVNVISFNAPVLF-MTIKVRKSTSLLMSAVVPDGIGTVSTILPMILADKLGRTVLFLLGGIQILV 374 (522)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~ 374 (522)
.+......+....+......+.|.++ +..|++..+.+ .......+..+++.++.+++.||+|+|+.+..+.....+
T Consensus 196 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g-~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~ 272 (377)
T PRK11102 196 --VLGYMLASGFSFAGMFSFLTAGPFVYIELNGVSPQNFG-YYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFI 272 (377)
T ss_pred --HHHHHHHHHHHHHHHHHHHHcCHHHHHHHhCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 22222222222233334445556555 55799988888 888899999999999999999999999988877765444
Q ss_pred HHHHHHHHHHHhhCCCCCCcchhhHHHHHHHHHHHHhhhccccccccccccccCchhhhhHHHHHHHHHHH-HHHHHHHH
Q 047115 375 SQVMIRSIMAAQLGDHGGFNIGYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDL-LFTFLVAQ 453 (522)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~-~~~~~~~~ 453 (522)
..+.+..... .+...+...+....+..+.+.. .+.......|..| +.++++.++.+.... ++..+++.
T Consensus 273 ~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~~ 341 (377)
T PRK11102 273 MGIWLVVSAL---------LDLGFWALVVGVAAFVGCVSMI-SSNAMAVILDEFP-HMAGTASSLAGTLRFGIGAIVGAL 341 (377)
T ss_pred HHHHHHHHHH---------HhhhHHHHHHHHHHHHHHHHHh-hHHHHHHHhcccc-ccchHHHHHHHHHHHHHHHHHHHH
Confidence 3333222211 0111222222222222222222 2222234456666 788999998877654 44444443
Q ss_pred H
Q 047115 454 T 454 (522)
Q Consensus 454 ~ 454 (522)
+
T Consensus 342 ~ 342 (377)
T PRK11102 342 L 342 (377)
T ss_pred H
Confidence 3
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.7e-26 Score=234.02 Aligned_cols=324 Identities=17% Similarity=0.233 Sum_probs=226.6
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhhh
Q 047115 55 NYGKFDSQLLAAFTSSLYIAGLIAFLFASKVTRAFGRKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCC 134 (522)
Q Consensus 55 ~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 134 (522)
+++|.+..+.+++.+.+.++..+++++.|+++||+|||+++. .+.++
T Consensus 25 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~---------------------------------~~~~~ 71 (352)
T PF07690_consen 25 EELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLI---------------------------------IGLLL 71 (352)
T ss_dssp CCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHH---------------------------------HHHHH
T ss_pred HccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEe---------------------------------ehhhh
Confidence 344789999999999999999999999999999999999999 99999
Q ss_pred hHHHHHHHhhhhhhHHHHHHHHHHHhhhhhhhccccccccccccccccccccCCcc-hhHHHHHHHHHHHHHHHHHHHHh
Q 047115 135 YSNHCSIGGAAFNIYMLILGCVLLGVGIGFTSQSIQRFNQFAYMILLSSNFETTRL-SHIDFLLQISICYLILSANLLNY 213 (522)
Q Consensus 135 ~~~~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~-g~~~~~~~~~~~lG~~~~~~~~~ 213 (522)
.+++.++..+++|.+.+++.|++.|++.+...+....+ +.| ++|+++ ++.+++.+.+..+|.++++.+++
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~--------i~~-~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~ 142 (352)
T PF07690_consen 72 FALGSLLLAFASNFWLLLIARFLLGIGSGFFSPASNAL--------IAD-WFPPEERGRAFGILSAGFSLGSILGPLLGG 142 (352)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH--------HHH-CCCTCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHhhhhhhHHHHhhhcccccccccccccccccc--------ccc-cchhhhhhhccccccchhhhhhhcccchhh
Confidence 99997777677888899999999999999999999999 999 888877 99999999999999999999999
Q ss_pred hhhccCCCCchHHHHHhhHHHHHHHHHH-hcccCCChHHHHHhCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHHhhccc
Q 047115 214 GTQKIKGSWGWRISLAMAAVPASILTIG-SLFLPETPNSIIQRNKDHQKAEEILQIVRNTTDVKAELDDIIRASSKIIHR 292 (522)
Q Consensus 214 ~l~~~~~~~gwr~~f~i~~~~~~~~~~~-~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 292 (522)
.+.+. .+||+.|++.++..++..++ ..+++++|+....+++ .++.++ .+.+..+ ..+.++++
T Consensus 143 ~l~~~---~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~-~~~~~~----------~~~~~~~---~~~~~~~~ 205 (352)
T PF07690_consen 143 FLISY---FGWRWAFLISAILSLIAAILFILFLPEPPPPRERESP-KESESK----------KPKPLKP---GFKSLFKN 205 (352)
T ss_dssp HCCCH---CHHCCHHHHHHHHHHHHHHHHHCCC---STTTT--SS-TTTT------------HHHCCCH----CTHHHHH
T ss_pred hhhhc---cccccccccccchhhhhhhhHhhhhhhcccccccccc-cccccc----------ccccccc---cccccccc
Confidence 88744 37999999988877766553 3455544321111111 111000 0000000 00011222
Q ss_pred cchhHHHHHHHHHHhhhccchhhHhcHHHH-HHHcCCC-CchhhHHHhHHHHHHHHHHHHhHHHHhhhccchHHHHHHHH
Q 047115 293 IYRPQLVMAILIPFQQVTRVNVISFNAPVL-FMTIKVR-KSTSLLMSAVVPDGIGTVSTILPMILADKLGRTVLFLLGGI 370 (522)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~ 370 (522)
+..+..+... +...........+.|.+ .+..|++ ..+.+ .......+.+.++.++.+++.||+++|+.......
T Consensus 206 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 281 (352)
T PF07690_consen 206 PVLWILLIAF---FLFFFVFSGFSFFLPLYLQEVLGFSGPSQAG-LLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAIL 281 (352)
T ss_dssp HCCHHHHHHH---HHHHHHHHHHHHHHHHHCCHHHHCCTHHHHH-HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred chhhhhhhhh---hHHHHHHHHhhcccchhhhhccCCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 2122122222 22222334467788887 4677888 56777 77888899999999999999999999877776666
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCCcchhhHHHHHHHHHHHHhhhccccccccccccccCchhhhhHHHHHHHHHHHHHHHH
Q 047115 371 QILVSQVMIRSIMAAQLGDHGGFNIGYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFL 450 (522)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~ 450 (522)
...+..+.+..... ............+.+.+.+.. .+....+..|..|+++|+++.|+.+....++..+
T Consensus 282 ~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i 350 (352)
T PF07690_consen 282 LLILGALGLLLLPF----------SSSPVWLIIALFLIGFGFGIV-FPILFSLIQELVPPEYRGTAFGLFNSIGSLGGII 350 (352)
T ss_dssp HHHHHHHHHCCSHH----------HCHHHHHHHHHHHHHHHHHHH-CHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----------hhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 65555554443321 112223333333344444433 4455577789999999999999999999999988
Q ss_pred HH
Q 047115 451 VA 452 (522)
Q Consensus 451 ~~ 452 (522)
+|
T Consensus 351 gP 352 (352)
T PF07690_consen 351 GP 352 (352)
T ss_dssp HH
T ss_pred CC
Confidence 86
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.7e-26 Score=235.46 Aligned_cols=297 Identities=15% Similarity=0.100 Sum_probs=218.5
Q ss_pred HHHHHHHHHHHhhhhhcchhhccccccHHHHHHhhhhhhhcccCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHh
Q 047115 6 VLSCIVAATSGLIFGYDIGVSGGVTLMEPFLKKCFLEVYKKMKEDPKISNYGKFDSQLLAAFTSSLYIAGLIAFLFASKV 85 (522)
Q Consensus 6 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l 85 (522)
+.+....++..+....|...++-...+. +.+|.+....+++.+.++++++++++.+++|.+
T Consensus 44 l~i~~~~~~~y~~~~~d~~si~~a~l~g-------------------~~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L 104 (495)
T KOG2533|consen 44 LFILPFLCYLYFHAYLDKSSIVNASLSG-------------------LKEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLL 104 (495)
T ss_pred HHHHHHHHHHHHHHhcchhcchhHHHcC-------------------CccccchhhhhhhhHHHHHHHHHHHHHhhHHHH
Confidence 4445556666677777777665443211 346668899999999999999999999999999
Q ss_pred hhhhccccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhhhhHHHHHHHhhhhhhHHHHHHHHHHHhhhhhh
Q 047115 86 TRAFGRKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCCYSNHCSIGGAAFNIYMLILGCVLLGVGIGFT 165 (522)
Q Consensus 86 ~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~l~~~r~l~G~~~g~~ 165 (522)
.||++-.+.+. .+.+++++..++.....|++.+++.|+++|+.++..
T Consensus 105 ~~r~~ls~~l~---------------------------------~~~~~w~~~~~~~~~~~s~~~~ialr~llGl~es~~ 151 (495)
T KOG2533|consen 105 GDRFPLSKGLS---------------------------------VSGILWGLFGFLTAAVHSFPGLIALRFLLGLFESGG 151 (495)
T ss_pred HHhCChHHHHH---------------------------------HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhccc
Confidence 99999888888 888899888888888999999999999999999999
Q ss_pred hccccccccccccccccccccCCcc-hhHHHHHHHHHHHHHHHHHHHHhhhhccC---CCCchHHHHHhhHHHHHH-HHH
Q 047115 166 SQSIQRFNQFAYMILLSSNFETTRL-SHIDFLLQISICYLILSANLLNYGTQKIK---GSWGWRISLAMAAVPASI-LTI 240 (522)
Q Consensus 166 ~~~~~~~~~~~~~~~i~~~~~~~~~-g~~~~~~~~~~~lG~~~~~~~~~~l~~~~---~~~gwr~~f~i~~~~~~~-~~~ 240 (522)
+|....+ ++. |+.+++ +..++++.+..++|.++|+++++.+.+.. ...||||.|++.++..++ .++
T Consensus 152 wP~~~~~--------lg~-wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~ 222 (495)
T KOG2533|consen 152 WPGVVAI--------LGN-WYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIV 222 (495)
T ss_pred chHHHHH--------HHh-hcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHhe
Confidence 9999999 999 888888 99999999999999999999999865422 246999999997766655 556
Q ss_pred HhcccCCChH--HHHHhCCCHHHHHHHHHHHcCCcchH-HHHHHHHHHHHhhccccchhHHHHHHHHHHhhhccchhhHh
Q 047115 241 GSLFLPETPN--SIIQRNKDHQKAEEILQIVRNTTDVK-AELDDIIRASSKIIHRIYRPQLVMAILIPFQQVTRVNVISF 317 (522)
Q Consensus 241 ~~~~lpesp~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (522)
..+++|+.|. +..++++ .+-..+..++.+.....+ .+....+ +.++ .+.++...+..++.....+.+.+
T Consensus 223 ~f~~lp~~P~~~~fl~~~e-k~~~~~~~~~~~~~~~~~~~~~~~~~----~a~~---dp~vw~~~l~~~~~~lv~~~~~~ 294 (495)
T KOG2533|consen 223 VFFFLPDNPSKAWFLTDEE-KELVVERLRESPSGGIENKFKWKGFK----EALK---DPGVWPFSLCYFFLKLVNYGFSY 294 (495)
T ss_pred EEEEecCChhhccccchHH-HHHHHHHHHhccCCCcccccCHHHHH----HHHh---chhHHHHHHHHHHHhhccccHHH
Confidence 6778999996 2221111 111112222211111111 1111111 2232 33344334444666666677899
Q ss_pred cHHHHHHH-cCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhh----ccchHHHHHHHHHH
Q 047115 318 NAPVLFMT-IKVRKSTSLLMSAVVPDGIGTVSTILPMILADK----LGRTVLFLLGGIQI 372 (522)
Q Consensus 318 ~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr----~g~~~~~~~~~~~~ 372 (522)
|.|.++++ .|++..++. .+.++..++++++.++.|+++|| ..+|........+.
T Consensus 295 ~lpl~l~~~~~~s~~~a~-~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~ 353 (495)
T KOG2533|consen 295 WLPLYLKSNGGYSELQAN-LLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLY 353 (495)
T ss_pred HHHHHHHcCCCcChHHhc-cccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 99999988 569999998 99999999999999999999999 45555444444333
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.5e-25 Score=226.92 Aligned_cols=365 Identities=13% Similarity=0.025 Sum_probs=237.9
Q ss_pred HHHHhhhhhcchhhccccccHHHHHHhhhhhhhcccCCCCCCCCCCCchh-----HHHHHHHHHHHHHHHHHHHHHHhhh
Q 047115 13 ATSGLIFGYDIGVSGGVTLMEPFLKKCFLEVYKKMKEDPKISNYGKFDSQ-----LLAAFTSSLYIAGLIAFLFASKVTR 87 (522)
Q Consensus 13 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~-----~~~~~~s~~~~~~~i~~~~~g~l~d 87 (522)
.++.++.++..+...+.. |.+.+++ |++.. ..+++.+++.++..++++++|+++|
T Consensus 20 ~~~~~~~~~~~~~~~~~l--~~~~~~~------------------g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~d 79 (408)
T PRK09874 20 WLGCFLTGAAFSLVMPFL--PLYVEQL------------------GVTGHSALNMWSGLVFSITFLFSAIASPFWGGLAD 79 (408)
T ss_pred HHHHHHHHHHHHHhhhhH--HHHHHHh------------------CCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445566666666665544 7777776 33432 3589999999999999999999999
Q ss_pred hhccccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhhhhHHHHHHHhhhhhhHHHHHHHHHHHhhhhhhhc
Q 047115 88 AFGRKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCCYSNHCSIGGAAFNIYMLILGCVLLGVGIGFTSQ 167 (522)
Q Consensus 88 r~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~ 167 (522)
|+|||+++. .+.++.+++.++..++++++.+++.|++.|++.+ ..+
T Consensus 80 r~g~r~~~~---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~ 125 (408)
T PRK09874 80 RKGRKIMLL---------------------------------RSALGMGIVMVLMGLAQNIWQFLILRALLGLLGG-FVP 125 (408)
T ss_pred hhCcHHHHH---------------------------------HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhh-hHH
Confidence 999999999 9999999999988899999999999999999865 456
Q ss_pred cccccccccccccccccccCCcc-hhHHHHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHhhHHHHHHHHH-Hhccc
Q 047115 168 SIQRFNQFAYMILLSSNFETTRL-SHIDFLLQISICYLILSANLLNYGTQKIKGSWGWRISLAMAAVPASILTI-GSLFL 245 (522)
Q Consensus 168 ~~~~~~~~~~~~~i~~~~~~~~~-g~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~gwr~~f~i~~~~~~~~~~-~~~~l 245 (522)
....+ +.+ ..++++ +++.++...+..+|..+++.+++.+.+. .+||+.|.+.++..++..+ ..+++
T Consensus 126 ~~~~~--------~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (408)
T PRK09874 126 NANAL--------IAT-QVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADS---YGLRPVFFITASVLFLCFLVTLFCI 193 (408)
T ss_pred hHHHH--------HHH-hcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56666 888 778777 9999999999999999999999887654 3799999887766555433 34455
Q ss_pred CCChHHHHHhCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHHhhccccchhHHHHHHHHHHhhhccchhhHhcHHHHHHH
Q 047115 246 PETPNSIIQRNKDHQKAEEILQIVRNTTDVKAELDDIIRASSKIIHRIYRPQLVMAILIPFQQVTRVNVISFNAPVLFMT 325 (522)
Q Consensus 246 pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (522)
||+++. .++ +++. + .++. . +.++++....... ...+...........+.+.+..+
T Consensus 194 ~~~~~~---~~~-~~~~-~--------------~~~~---~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 248 (408)
T PRK09874 194 RENFQP---VSK-KEML-H--------------MREV---V-TSLKNPKLVLSLF--VTTLIIQVATGSIAPILTLYVRE 248 (408)
T ss_pred ccCccc---ccc-hhhh-H--------------HHHH---H-HhCcCCchHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 664321 001 0000 0 0000 0 1222221111111 11111111112233445555555
Q ss_pred cCCCCch----hhHHHhHHHHHHHHHHHHhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcchhhHHH
Q 047115 326 IKVRKST----SLLMSAVVPDGIGTVSTILPMILADKLGRTVLFLLGGIQILVSQVMIRSIMAAQLGDHGGFNIGYAYLI 401 (522)
Q Consensus 326 ~g~~~~~----~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (522)
.+.+..+ .+ ......+++.+++.+..+++.||++||+.+..+.....++.+..... ...+..
T Consensus 249 ~~~~~~~~~~~~g-~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~ 314 (408)
T PRK09874 249 LAGNVSNIAFISG-MIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFV-------------QTPLQL 314 (408)
T ss_pred HhccchHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHh-------------ccHHHH
Confidence 4333222 23 44555677888889999999999999998887766655544433321 112222
Q ss_pred HHHHHHHHHhhhccccccccccccccCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchh-hHHHHHHHHHHHHH
Q 047115 402 LFLICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLVAQTFLAMLCHFKAGV-FFCFGGWVAFMTTF 480 (522)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~i~~~~ 480 (522)
.+...+.+.+.+.. .+.......+..|++.|++..++.+....++..++|.+.+.+.++.++.. +...+++.++..+.
T Consensus 315 ~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~ 393 (408)
T PRK09874 315 GILRFLLGAADGAL-LPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVY 393 (408)
T ss_pred HHHHHHHHhhhHhh-HHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHH
Confidence 33333333333322 23333444677888999999999999999999999999999999888644 44444444444443
Q ss_pred HHh
Q 047115 481 VHF 483 (522)
Q Consensus 481 ~~~ 483 (522)
.++
T Consensus 394 ~~~ 396 (408)
T PRK09874 394 SWN 396 (408)
T ss_pred HHH
Confidence 333
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.5e-24 Score=222.67 Aligned_cols=337 Identities=11% Similarity=0.022 Sum_probs=226.2
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhhhhHH
Q 047115 58 KFDSQLLAAFTSSLYIAGLIAFLFASKVTRAFGRKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCCYSN 137 (522)
Q Consensus 58 ~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 137 (522)
+.+..+.+++.+.+.+++.++++++|+++||+|||++++ .+.++.++
T Consensus 34 ~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~---------------------------------~~~~~~~~ 80 (393)
T PRK11195 34 HYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMF---------------------------------IANGIKLL 80 (393)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhH---------------------------------HHHHHHHH
Confidence 457888999999999999999999999999999999999 99999988
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHhhhhhhhccccccccccccccccccccCCcc-hhHHHHHHHHHHHHHHHHHHHHhhhh
Q 047115 138 HCSIGGAAFNIYMLILGCVLLGVGIGFTSQSIQRFNQFAYMILLSSNFETTRL-SHIDFLLQISICYLILSANLLNYGTQ 216 (522)
Q Consensus 138 ~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~-g~~~~~~~~~~~lG~~~~~~~~~~l~ 216 (522)
+++.+.++.+. ++.|+++|++.+...|...++ +.| ++|+++ ++++++.+....+|.++||.+++.+.
T Consensus 81 ~~~~~~~~~~~---~~~r~l~G~~~a~~~pa~~a~--------i~~-~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~ 148 (393)
T PRK11195 81 GCLLMLFGIHP---LLAYGLVGIGAAAYSPAKYGI--------LTE-LLPGEKLVKANGWMEGSTIAAILLGTVLGGALA 148 (393)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH--------HHH-HcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88887777664 678999999999999999999 999 999888 99999999999999999999999887
Q ss_pred ccCCCCchHHHHHhhHHHHHHHHHHhcccCCChHHHHHhCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHHhhccccchh
Q 047115 217 KIKGSWGWRISLAMAAVPASILTIGSLFLPETPNSIIQRNKDHQKAEEILQIVRNTTDVKAELDDIIRASSKIIHRIYRP 296 (522)
Q Consensus 217 ~~~~~~gwr~~f~i~~~~~~~~~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 296 (522)
+. .|+..+.+.+...++..+..+.+||+|+.. +++ +++..+. .++..+..+.+++++..+
T Consensus 149 ~~----~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~--~~~-~~~~~~~-------------~~~~~~~~~~l~~~~~~~ 208 (393)
T PRK11195 149 DP----HAEAALAVCALIYLLAALFNLFIPRLGARR--PGQ-SWNPIAL-------------LRDFFHACRVLWRDKLGR 208 (393)
T ss_pred HH----HHHHHHHHHHHHHHHHHHHHhcCCCCcccc--ccc-CCCHHHH-------------HHHHHHHHHHHHhCchhH
Confidence 53 377777665555444445556788876321 111 1111110 111111122444444333
Q ss_pred HHHHHHHHHHhhhccchhhHhcHHHHHH-HcCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhhccchHHHHHHHHHHHHH
Q 047115 297 QLVMAILIPFQQVTRVNVISFNAPVLFM-TIKVRKSTSLLMSAVVPDGIGTVSTILPMILADKLGRTVLFLLGGIQILVS 375 (522)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~ 375 (522)
.......+. ........+..|.+.+ ..|.++.+.+ .......++.+++++..+++.||.++++.+..+. ...+.
T Consensus 209 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~lg~s~~~~G-~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~-~~~~~ 283 (393)
T PRK11195 209 FSLAGTTLF---WGAGATLRFLVLAWAPVALGITLNQPA-YLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGI-LMGLV 283 (393)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHcCCChhHHH-HHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHH-HHHHH
Confidence 332222221 1111222333444443 4689999998 8889999999999999999999999888776654 22222
Q ss_pred HHHHHHHHHHhhCCCCCCcchhhHHHHHHHHHHHHhhhccccccccccccccCchhh-hhHHHHHHHHHHHHHHHHHHHH
Q 047115 376 QVMIRSIMAAQLGDHGGFNIGYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFPLEI-RSAGQSITVAVDLLFTFLVAQT 454 (522)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~-r~~~~g~~~~~~~~~~~~~~~~ 454 (522)
...+... +..+.......+.+.+.+....+.. +...+..|++. +|++.++.+...+++..++..+
T Consensus 284 ~~~~~~~-------------~~~~~~~~~~~~~G~~~g~~~~~~~-~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~ 349 (393)
T PRK11195 284 VLLMALQ-------------HSLLPAYPLLILIGALGGFFVVPMN-ALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGL 349 (393)
T ss_pred HHHHHHH-------------hHHHHHHHHHHHHHHhhhhhhhhHH-HHHHhhCcccccchhHHHHHhHHHHHHHHHHHHH
Confidence 2222211 1223233333344444443333333 44457666554 7999999999999999999988
Q ss_pred HHHHHHhccchhhHHHHHHHHHHHH
Q 047115 455 FLAMLCHFKAGVFFCFGGWVAFMTT 479 (522)
Q Consensus 455 ~~~~~~~~g~~~~~~~~~~~~i~~~ 479 (522)
.+.+ +..+-..-..+.+++.+.+.
T Consensus 350 ~~~~-~~~~~~~~~~~~~~~~~~~~ 373 (393)
T PRK11195 350 YSLL-VKLGVPVVAVIVGFGLLVAL 373 (393)
T ss_pred HHHH-HHcCCCHHHHHHHHHHHHHH
Confidence 8855 56664333333333333333
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.94 E-value=3e-24 Score=228.01 Aligned_cols=380 Identities=11% Similarity=0.043 Sum_probs=249.8
Q ss_pred HHHHHHHHhhhhhcchhhccccccHHHHHHhhhhhhhcccCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 047115 9 CIVAATSGLIFGYDIGVSGGVTLMEPFLKKCFLEVYKKMKEDPKISNYGKFDSQLLAAFTSSLYIAGLIAFLFASKVTRA 88 (522)
Q Consensus 9 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr 88 (522)
.....+.++..|......++.. |.+.++. |.+.++++.+ +.....+ ++.+++|+++||
T Consensus 14 ~~~~~~l~~~~gl~~~~~~~~l--~~~l~~~------------------g~~~~~ig~~-~~~~~~~-~~~~l~gpl~Dr 71 (491)
T PRK11010 14 SAILLILGFASGLPLALTSGTL--QAWMTVE------------------NIDLKTIGFF-SLVGQAY-VFKFLWSPLMDR 71 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHhC------------------CCCHHHHHHH-HHHHHHH-HHHHHHHHHHHc
Confidence 3444555566677777766554 5665554 6688888886 4444444 689999999999
Q ss_pred h-----ccccc-cccccccCcccchhhhhhhhhhhhhhhhcccccccchhhhhHHHHHHHhhh---hhhHHHHHHHHHHH
Q 047115 89 F-----GRKAS-ILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCCYSNHCSIGGAA---FNIYMLILGCVLLG 159 (522)
Q Consensus 89 ~-----Grk~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a---~~~~~l~~~r~l~G 159 (522)
+ ||||. ++ .+.++.+++...+++. .+++.+.+.|++.|
T Consensus 72 ~~~~~~Grrr~~ll---------------------------------~~~i~~~~~~~~~a~~~~~~~l~~l~~~~~l~~ 118 (491)
T PRK11010 72 YTPPFLGRRRGWLL---------------------------------ATQLLLLVAIAAMGFLEPGTQLRWLAALAVVIA 118 (491)
T ss_pred ccccCCCCchHHHH---------------------------------HHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHH
Confidence 9 99986 55 6666666666666664 47888999999999
Q ss_pred hhhhhhhccccccccccccccccccccCCcc-hhHHHHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHhhHHHHHHH
Q 047115 160 VGIGFTSQSIQRFNQFAYMILLSSNFETTRL-SHIDFLLQISICYLILSANLLNYGTQKIKGSWGWRISLAMAAVPASIL 238 (522)
Q Consensus 160 ~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~-g~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~gwr~~f~i~~~~~~~~ 238 (522)
++.+...+...++ ..| ++|+++ +++.++...+..+|.++++.++..+.+. .+|||..|++.++..++.
T Consensus 119 ~~~a~~~i~~~a~--------~~~-~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~--~~GWr~~f~i~a~l~ll~ 187 (491)
T PRK11010 119 FCSASQDIVFDAW--------KTD-VLPAEERGAGAAISVLGYRLAMLVSGGLALWLADR--YLGWQGMYWLMAALLIPC 187 (491)
T ss_pred HHHHHHHHHHHHH--------HHH-hcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc--ccCHHHHHHHHHHHHHHH
Confidence 9999998998898 999 888887 9999999999999999999998888752 248999999987776666
Q ss_pred HHHhcccCCChHHHHHhCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHHhhccccchhHHHHHHHHHHhhhccchhhHhc
Q 047115 239 TIGSLFLPETPNSIIQRNKDHQKAEEILQIVRNTTDVKAELDDIIRASSKIIHRIYRPQLVMAILIPFQQVTRVNVISFN 318 (522)
Q Consensus 239 ~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (522)
.+..++.||+++.. ++ +++.++ . ..+..++.++++..+......+... ........+
T Consensus 188 ~l~~~~~~e~~~~~---~~-~~~~~~------------~----~~~~l~~~~~~~~~~~~ll~~~l~~---~~~~~~~~~ 244 (491)
T PRK11010 188 IIATLLAPEPTDTI---PV-PKTLEQ------------A----VVAPLRDFFGRNNAWLILLLIVLYK---LGDAFAMSL 244 (491)
T ss_pred HHHHHhcCCCcccc---cc-ccchhh------------h----HHHHHHHHHcCcCHHHHHHHHHHHH---HHHHHHHHH
Confidence 66555678865310 11 000000 0 0011113444333333322222221 111222334
Q ss_pred HHHHH-HHcCCCCchhhHHHh-HHHHHHHHHHHHhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcch
Q 047115 319 APVLF-MTIKVRKSTSLLMSA-VVPDGIGTVSTILPMILADKLGRTVLFLLGGIQILVSQVMIRSIMAAQLGDHGGFNIG 396 (522)
Q Consensus 319 ~~~~~-~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (522)
.+.++ ++.|++..+.+ ... ....++.+++.++.|+++||+++|+.+.++..+..+..+.+..... ...
T Consensus 245 ~~~~l~~~~G~s~~~~g-~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~---------~~~ 314 (491)
T PRK11010 245 TTTFLIRGVGFDAGEVG-LVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSI---------TDK 314 (491)
T ss_pred HHHHHHHhcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh---------ccc
Confidence 45554 56899999988 665 4556899999999999999999988777665554444433322111 001
Q ss_pred hhHHHHHHHHHHHHhhhccccccccccccccCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHH
Q 047115 397 YAYLILFLICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLVAQTFLAMLCHFKAGVFFCFGGWVAF 476 (522)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i 476 (522)
..+......++.....+.+.. ..+.+..+..|++.+++..|+.+....++..+++.+.|.+.+..|+..++.+..++.+
T Consensus 315 ~~~~l~~~~~l~~~~~g~~~~-~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l 393 (491)
T PRK11010 315 NLYSMGAAVFFENLCGGMGTA-AFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAV 393 (491)
T ss_pred cHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHH
Confidence 112222222221122222222 2245556788888899999999999999999999999999999888776666666666
Q ss_pred HHHHHHhhccCC
Q 047115 477 MTTFVHFFLPET 488 (522)
Q Consensus 477 ~~~~~~~~~~~~ 488 (522)
.+++.....+++
T Consensus 394 ~~l~~~~~~~~~ 405 (491)
T PRK11010 394 PGLLLLLVCRQT 405 (491)
T ss_pred HHHHHHHHHHhc
Confidence 666655555543
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.3e-24 Score=223.73 Aligned_cols=354 Identities=9% Similarity=0.005 Sum_probs=236.9
Q ss_pred HHHHHHHHHHHhhhhhcchhhccccccHHHHHHhhhhhhhcccCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHh
Q 047115 6 VLSCIVAATSGLIFGYDIGVSGGVTLMEPFLKKCFLEVYKKMKEDPKISNYGKFDSQLLAAFTSSLYIAGLIAFLFASKV 85 (522)
Q Consensus 6 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l 85 (522)
+.......+..+..+++....+... |.+++++ |+++.+.+++.+.+.+++.+++++.|++
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~--p~i~~~~------------------~~s~~~~gl~~~~~~~g~~i~~~~~g~l 84 (438)
T PRK10133 25 IIPFALLCSLFFLWAVANNLNDILL--PQFQQAF------------------TLTNFQAGLIQSAFYFGYFIIPIPAGIL 84 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHh------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566677788877766554 6665555 7899999999999999999999999999
Q ss_pred hhhhccccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhhhhHHHHHHH---hhhhhhHHHHHHHHHHHhhh
Q 047115 86 TRAFGRKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCCYSNHCSIG---GAAFNIYMLILGCVLLGVGI 162 (522)
Q Consensus 86 ~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~a~~~~~l~~~r~l~G~~~ 162 (522)
+||+|||+++. .+.++++++++++ .++++++.++++|+++|+|.
T Consensus 85 ~dr~G~r~~l~---------------------------------~g~~~~~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~ 131 (438)
T PRK10133 85 MKKLSYKAGII---------------------------------TGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGL 131 (438)
T ss_pred HHHhCcHHHHH---------------------------------HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 99999999999 9999999999875 46889999999999999999
Q ss_pred hhhhccccccccccccccccccccCCcc-hhHHHHHHHHHHHHHHHHHHHHhhhhc-cCC----------------C---
Q 047115 163 GFTSQSIQRFNQFAYMILLSSNFETTRL-SHIDFLLQISICYLILSANLLNYGTQK-IKG----------------S--- 221 (522)
Q Consensus 163 g~~~~~~~~~~~~~~~~~i~~~~~~~~~-g~~~~~~~~~~~lG~~~~~~~~~~l~~-~~~----------------~--- 221 (522)
|...+....+ +.| +.++++ .+.+++.+..+.+|..+++.++..+.. ..+ .
T Consensus 132 g~~~~~~~~~--------v~~-~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~~~~~~~~~~~~~~~l~~~~~~~w~~ 202 (438)
T PRK10133 132 GCLETAANPF--------VTV-LGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMTPEQLSAYKH 202 (438)
T ss_pred HHHHhhHHHH--------HHH-hCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhhhccChhhHHHHHH
Confidence 9999999999 999 877777 678999999999999999998765431 100 0
Q ss_pred ---CchHHHHHh-hHHHHHHHHH-HhcccCCChHHHHHhCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHHhhccccchh
Q 047115 222 ---WGWRISLAM-AAVPASILTI-GSLFLPETPNSIIQRNKDHQKAEEILQIVRNTTDVKAELDDIIRASSKIIHRIYRP 296 (522)
Q Consensus 222 ---~gwr~~f~i-~~~~~~~~~~-~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 296 (522)
.+||++|+. .++..++.++ ....+||.+. +++ .++.++ +. .+..+++++++..+
T Consensus 203 ~~~~~w~~~f~~~~~v~~~~~~~~~~~~~p~~~~----~~~-~~~~~~---------~~-------~~~~~~ll~~~~~~ 261 (438)
T PRK10133 203 SLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQS----DNH-SDAKQG---------SF-------SASLSRLARIRHWR 261 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc----ccc-cccccc---------ch-------hhhHHHHHhCchHH
Confidence 256767754 3333333222 2334555321 000 000000 00 00011333333333
Q ss_pred HHHHHHHHHHhhhccchhhHhcHHHHH-H-HcCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhhccchHHHHHHHHHHHH
Q 047115 297 QLVMAILIPFQQVTRVNVISFNAPVLF-M-TIKVRKSTSLLMSAVVPDGIGTVSTILPMILADKLGRTVLFLLGGIQILV 374 (522)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~ 374 (522)
...+..+.. .........|.+.++ + ..|+++.+++ .......++.++++++.+++.||+++|+++..+..+..+
T Consensus 262 ~~~l~~~~~---~~~~~~~~~~~~~~l~~~~~g~s~~~ag-~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~ 337 (438)
T PRK10133 262 WAVLAQFCY---VGAQTACWSYLIRYAVEEIPGMTAGFAA-NYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMA 337 (438)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHhhhcCCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 222222222 222223344566554 4 4699999999 899999999999999999999999999988877665554
Q ss_pred HHHHHHHHHHHhhCCCCCCcchhhHHHHHHHHHHHHhhhccccccccccccccCchhhhhHHHHHHHHHHHHHHHHHHHH
Q 047115 375 SQVMIRSIMAAQLGDHGGFNIGYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLVAQT 454 (522)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~ 454 (522)
...+.... +.. ..+....+.+.+.+..++ .......|..|+ +.+++.++.. ....++.++|++
T Consensus 338 ~~~~~~~~-----------~~~---~~~~~~~l~glg~~~i~P-~~~s~a~~~~~~-~~~~as~l~~-~~~~g~~~~~~i 400 (438)
T PRK10133 338 LCLISAFA-----------GGH---VGLIALTLCSAFMSIQYP-TIFSLGIKNLGQ-DTKYGSSFIV-MTIIGGGIVTPV 400 (438)
T ss_pred HHHHHHHc-----------CCh---HHHHHHHHHHHHHHHHHH-HHHHHHHcccch-hhccchhHHh-HHhccchHHHHH
Confidence 44333221 111 112233344445444433 334555576765 4567777775 455678899999
Q ss_pred HHHHHHhcc
Q 047115 455 FLAMLCHFK 463 (522)
Q Consensus 455 ~~~~~~~~g 463 (522)
.+.+.+..+
T Consensus 401 ~G~l~~~~g 409 (438)
T PRK10133 401 MGFVSDAAG 409 (438)
T ss_pred HHHHHHhcc
Confidence 999999876
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=8e-25 Score=227.72 Aligned_cols=359 Identities=14% Similarity=0.087 Sum_probs=252.6
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhh
Q 047115 54 SNYGKFDSQLLAAFTSSLYIAGLIAFLFASKVTRAFGRKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSC 133 (522)
Q Consensus 54 ~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (522)
+.++++++++.+++.+.+++|+.+++++.|++.||+|.|+++. .+.+
T Consensus 65 ~~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~---------------------------------~~~~ 111 (466)
T KOG2532|consen 65 AGEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFF---------------------------------ISGL 111 (466)
T ss_pred CceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHH---------------------------------HHHH
Confidence 6688999999999999999999999999999999999999999 9999
Q ss_pred hhHHHHHHHhhhh--hhHHHHHHHHHHHhhhhhhhccccccccccccccccccccCCcc-hhHHHHHHHHHHHHHHHHHH
Q 047115 134 CYSNHCSIGGAAF--NIYMLILGCVLLGVGIGFTSQSIQRFNQFAYMILLSSNFETTRL-SHIDFLLQISICYLILSANL 210 (522)
Q Consensus 134 l~~~~~~~~~~a~--~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~-g~~~~~~~~~~~lG~~~~~~ 210 (522)
+.++++++...+. +++.+++.|++||++.|..+|+...+ .++ |.|+++ ++..++...+..+|.+++.+
T Consensus 112 ~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~~~pa~~~i--------~~~-W~P~~Ers~~~ail~~g~q~g~v~~mp 182 (466)
T KOG2532|consen 112 ISALLTLLTPLAASIGFYLLLVLRFLQGLGQGVLFPAIGSI--------LAK-WAPPNERSTFIAILTAGSQLGTIITMP 182 (466)
T ss_pred HHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhHHHhhhhce--------eee-ECCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998875 44678999999999999999999999 999 888888 99999999999999999999
Q ss_pred HHhhhhccCCCCchHHHHHhhHHHHHHHHHHh-cccCCChHHHHHhCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHHhh
Q 047115 211 LNYGTQKIKGSWGWRISLAMAAVPASILTIGS-LFLPETPNSIIQRNKDHQKAEEILQIVRNTTDVKAELDDIIRASSKI 289 (522)
Q Consensus 211 ~~~~l~~~~~~~gwr~~f~i~~~~~~~~~~~~-~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 289 (522)
+++.+.+. ..||+..|++.++..++..+++ ++..|+|.. ++.-..+|.+...+... +++.++. .. ..
T Consensus 183 ~sg~lc~s--~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~--h~~is~~El~~I~~~k~-~~~~~~~---~~----vP 250 (466)
T KOG2532|consen 183 VSGLLCES--SLGWPSIFYVFGIVGLIWFILWFLFYSDSPSK--HPNISEKELKYIEKGKS-EAHVKKK---PP----VP 250 (466)
T ss_pred hHHHHhcc--CCCCchHHHHHHHHHHHHHHHHHHHhcCCccc--CCCCCHHHHHHHHhccc-ccccCCC---CC----CC
Confidence 99988865 2599999999888777765554 456677752 11110222222221111 1101000 00 01
Q ss_pred ccccchhHHHHHHHHH-HhhhccchhhHhcHHHHHHH-cCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhhccch-----
Q 047115 290 IHRIYRPQLVMAILIP-FQQVTRVNVISFNAPVLFMT-IKVRKSTSLLMSAVVPDGIGTVSTILPMILADKLGRT----- 362 (522)
Q Consensus 290 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~----- 362 (522)
+++....+.+++..+. ++...+...+..|.|.|+++ +|++..+.+ +..+++.+...+..++.|.++||+.+|
T Consensus 251 ~~~i~ts~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G-~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t 329 (466)
T KOG2532|consen 251 YKAILTSPPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETG-FLSALPFLAMAIVKFVAGQLSDRLTFRILSET 329 (466)
T ss_pred HHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhccCchH
Confidence 1122233445555555 88888889999999999965 599999999 999999999999999999999998662
Q ss_pred ---HH-HHHHHHHHHHHHHHHHHHHHHhhCCCCCCcchhhHHHHHHHHHHHHhhhccccccccccccccCchhhhhHHHH
Q 047115 363 ---VL-FLLGGIQILVSQVMIRSIMAAQLGDHGGFNIGYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQS 438 (522)
Q Consensus 363 ---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g 438 (522)
|. -.++....++.++.+... +....+..+++..+.....+... ...........+++.+..+|
T Consensus 330 ~~rkifn~i~~~~~ai~l~~l~~~-----------~~~~~~~a~~~l~~~~~~~g~~~--~Gf~~~~~~~apq~a~~l~g 396 (466)
T KOG2532|consen 330 TVRKIFNTIAFGGPAVFLLVLAFT-----------SDEHRLLAVILLTIAIGLSGFNI--SGFYKNHQDIAPQHAGFVMG 396 (466)
T ss_pred hHHHHHHhHHHHHHHHHHHeeeec-----------CCCcchHHHHHHHHHHHHcccch--hhhHhhhhhccchHHHHHHH
Confidence 11 122233333333333332 12222233333333223322222 22222112215678899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh---ccch-hhHHHHHHHHHHHHH
Q 047115 439 ITVAVDLLFTFLVAQTFLAMLCH---FKAG-VFFCFGGWVAFMTTF 480 (522)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~---~g~~-~~~~~~~~~~i~~~~ 480 (522)
+.+.+..+.++++|.+.+.+... ..|. +|++.+++..+..++
T Consensus 397 ~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~ 442 (466)
T KOG2532|consen 397 IINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGNII 442 (466)
T ss_pred HHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhchh
Confidence 99999999999999999988842 2354 455555555444433
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.2e-24 Score=218.84 Aligned_cols=341 Identities=12% Similarity=0.132 Sum_probs=216.9
Q ss_pred CCCchhHHHHHHHHHHH-HHHHHHHHHHHhhhhhccccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhhhh
Q 047115 57 GKFDSQLLAAFTSSLYI-AGLIAFLFASKVTRAFGRKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCCY 135 (522)
Q Consensus 57 ~~~~~~~~~~~~s~~~~-~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 135 (522)
+|+|.++.|++.+...+ +..++.+++++ +||+||||.++ ..+.++.
T Consensus 46 ~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~--------------------------------~~~~~~~ 92 (393)
T PRK15011 46 VHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLI--------------------------------VFCCLLG 92 (393)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHH--------------------------------HHHHHHH
Confidence 37899999999877655 55556655556 99999998754 0455666
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHhhhhhhhccccccccccccccccccccCCc-c--hhHHHHHHHHHHHHHHHHHHHH
Q 047115 136 SNHCSIGGAAFNIYMLILGCVLLGVGIGFTSQSIQRFNQFAYMILLSSNFETTR-L--SHIDFLLQISICYLILSANLLN 212 (522)
Q Consensus 136 ~~~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~-~--g~~~~~~~~~~~lG~~~~~~~~ 212 (522)
+++..+.+++++++.+++.+.+.|...+...+....+ ..+ +.+++ + +...++.+++.++|.++++.++
T Consensus 93 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--------~~~-~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~ 163 (393)
T PRK15011 93 VLACTLFAWNRNYFVLLFVGVFLSSFGSTANPQMFAL--------ARE-HADKTGREAVMFSSFLRAQVSLAWVIGPPLA 163 (393)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHH--------HHH-HhhhccchHHHHHHHHHHHHHHHHHHhhHHH
Confidence 6777778889999988766665555555667777777 777 65543 2 4556888999999999999999
Q ss_pred hhhhccCCCCchHHHHHhhHHHHHHH-HHHhcccCCChHHHHHhCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHHhhcc
Q 047115 213 YGTQKIKGSWGWRISLAMAAVPASIL-TIGSLFLPETPNSIIQRNKDHQKAEEILQIVRNTTDVKAELDDIIRASSKIIH 291 (522)
Q Consensus 213 ~~l~~~~~~~gwr~~f~i~~~~~~~~-~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 291 (522)
+.+.+. .|||..|++.++..++. .....++||.++. +++ .++ + .+ . .+
T Consensus 164 ~~l~~~---~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~--~-~~--------------------~-~~ 212 (393)
T PRK15011 164 YALAMG---FSFTVMYLSAAVAFIVCGVMVWLFLPSMRKE---LPL-ATG--T-LE--------------------A-PR 212 (393)
T ss_pred HHHHHh---cChHHHHHHHHHHHHHHHHHHHhhcCccCCC---Ccc-ccc--c-cc--------------------c-cc
Confidence 988754 38999998877665554 3445567876521 111 000 0 00 0 00
Q ss_pred ccchhHHHHHHHHHHhhhccchhhHhcHHHHH-HHcCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhhccchHHHHHHHH
Q 047115 292 RIYRPQLVMAILIPFQQVTRVNVISFNAPVLF-MTIKVRKSTSLLMSAVVPDGIGTVSTILPMILADKLGRTVLFLLGGI 370 (522)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~ 370 (522)
++ ++..+..................+.|.++ ++.|++..+.+ .......+..+++.++.|+++||++||+.+..+..
T Consensus 213 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~g-~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~ 290 (393)
T PRK15011 213 RN-RRDTLLLFVICTLMWGTNSLYIINMPLFIINELHLPEKLAG-VMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAV 290 (393)
T ss_pred cc-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHH
Confidence 11 11111111222112222333445677777 45788888887 66667677888899999999999999997776554
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCCcchhhHHHHHHHHHHHHhhhccccccccccccccCchhhhhHHHHHHHHHHHHHHHH
Q 047115 371 QILVSQVMIRSIMAAQLGDHGGFNIGYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFL 450 (522)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~ 450 (522)
...+....+... +..+..+....+.....+...+ ....+..|..|+ .|+++.++.+...+++..+
T Consensus 291 ~~~~~~~~~~~~-------------~~~~~~l~~~~l~~~~~g~~~~-~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~ 355 (393)
T PRK15011 291 AGVCFYAGMLMA-------------HSPAILLGLQLLNAIYIGILGG-IGMLYFQDLMPG-QAGSATTLYTNTSRVGWII 355 (393)
T ss_pred HHHHHHHHHHHH-------------hhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCCC-CcchHHHHHHHHHHHHHHH
Confidence 444332222111 1122222222222222222112 223445688885 5899999999999999999
Q ss_pred HHHHHHHHHHhccchhhHHHHHHHHHHHHHHHhhccC
Q 047115 451 VAQTFLAMLCHFKAGVFFCFGGWVAFMTTFVHFFLPE 487 (522)
Q Consensus 451 ~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~ 487 (522)
++.+.+.+.++.++...+..+....+.+.+..++.||
T Consensus 356 g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 392 (393)
T PRK15011 356 AGSLAGIVAEIWNYHAVFWFALVMIIATLFCLLRIKD 392 (393)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhcC
Confidence 9999999999888766555555556666666666654
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.9e-24 Score=210.46 Aligned_cols=353 Identities=15% Similarity=0.100 Sum_probs=256.6
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhh
Q 047115 54 SNYGKFDSQLLAAFTSSLYIAGLIAFLFASKVTRAFGRKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSC 133 (522)
Q Consensus 54 ~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (522)
.+|+++|+.|.+++.++..+...+..++.|.+.||+|.|++.. .+.+
T Consensus 41 ~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~---------------------------------~s~~ 87 (417)
T COG2223 41 KSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTI---------------------------------LSML 87 (417)
T ss_pred ccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHH---------------------------------HHHH
Confidence 4566999999999999999999999999999999999999999 9999
Q ss_pred hhHHHHHHHhhhhhh---HHHHHHHHHHHhhhhhhhccccccccccccccccccccCCcc-hhHHHHHHHHHHHHHHHHH
Q 047115 134 CYSNHCSIGGAAFNI---YMLILGCVLLGVGIGFTSQSIQRFNQFAYMILLSSNFETTRL-SHIDFLLQISICYLILSAN 209 (522)
Q Consensus 134 l~~~~~~~~~~a~~~---~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~-g~~~~~~~~~~~lG~~~~~ 209 (522)
+..+-++..+++.+. +++++.+++.|++.| .+.+...+ +++ |+||++ |.++|+.. ..++|..+..
T Consensus 88 l~~IP~~~~~~a~~~~~~~~ll~~gll~G~~Ga-sFav~m~~--------~s~-~fP~~~qG~AlGI~g-~GN~G~av~q 156 (417)
T COG2223 88 LLLIPCLGLAFAVTYPSTWQLLVIGLLLGLAGA-SFAVGMPN--------ASF-FFPKEKQGLALGIAG-AGNLGVAVAQ 156 (417)
T ss_pred HHHHHHHHHHHHccCCchHHHHHHHHHHhcccc-eehccccc--------ccc-cCChhhhhHHHHHhc-cccccHHHHH
Confidence 999999999988655 499999999999855 55666666 899 999999 99999999 8888888877
Q ss_pred HHHhhhhccCCCCchHHHHHhhHHHHHH-HHHHhcccCCChHHHHHhCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHHh
Q 047115 210 LLNYGTQKIKGSWGWRISLAMAAVPASI-LTIGSLFLPETPNSIIQRNKDHQKAEEILQIVRNTTDVKAELDDIIRASSK 288 (522)
Q Consensus 210 ~~~~~l~~~~~~~gwr~~f~i~~~~~~~-~~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (522)
.++..+....+...||....+..+..++ .+..++...|.|......++ .+. .+++ .
T Consensus 157 ~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r~~~~~--~~~--------------~~~~-------~ 213 (417)
T COG2223 157 LVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMNDVPEHRASVKP--QLP--------------AQLK-------A 213 (417)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhccccc--cch--------------hHHH-------H
Confidence 7777666544100299888776666655 44445556666643111111 100 0111 2
Q ss_pred hccccchhHHHHHHHHHHhhhccchhhHhcHHHHHH-HcCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhhccchHHHHH
Q 047115 289 IIHRIYRPQLVMAILIPFQQVTRVNVISFNAPVLFM-TIKVRKSTSLLMSAVVPDGIGTVSTILPMILADKLGRTVLFLL 367 (522)
Q Consensus 289 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~ 367 (522)
+++ .+..+.....++..+.++..++.+.|.+++ ++|.++.+++ .........+.+.++++|+++||+|.+|+...
T Consensus 214 v~~---~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag-~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~ 289 (417)
T COG2223 214 VFS---NKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAG-LIAFLFPLIGALARPLGGWLSDRIGGRRVTLA 289 (417)
T ss_pred Hhc---CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHH-HHHHHHHHHHHHHHhccchhhhhccchhHHHH
Confidence 232 334455555556666667778899999884 6799999998 88889999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCCCCcchhhHHHHHHHHHHHHhhhccccccccccccccCchhhhhHHHHHHHHHHHHH
Q 047115 368 GGIQILVSQVMIRSIMAAQLGDHGGFNIGYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLF 447 (522)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~ 447 (522)
....+.++......... ..+. .......+..........+.+-+.+ +-++..++|. +-|...|+..+.+.+|
T Consensus 290 ~f~~~~~~~~~l~~~~~----~~~~--~~~~~~~~~~~l~l~~~~G~GnGsv-fk~Ip~if~~-~~G~v~G~vga~G~lG 361 (417)
T COG2223 290 VFVGMALAAALLSLFLT----GFGH--GGSFVVFVAVFLALFVFAGLGNGSV-FKMIPVIFPK-ETGAVTGIVGAIGGLG 361 (417)
T ss_pred HHHHHHHHHHHHHcccc----cccc--CcchHHHHHHHHHHHHHhccCcchh-eeechHHHHh-hhhHHHHHHHHhcccc
Confidence 88888887776665421 1100 1223333333334444445454444 3444677775 5688899999999999
Q ss_pred HHHHHHHHHHHHHhcc--chhhHHHHHHHHHHHHHHHhhc
Q 047115 448 TFLVAQTFLAMLCHFK--AGVFFCFGGWVAFMTTFVHFFL 485 (522)
Q Consensus 448 ~~~~~~~~~~~~~~~g--~~~~~~~~~~~~i~~~~~~~~~ 485 (522)
++..|..++...+..+ ...+.++..+..++.+..+...
T Consensus 362 Gf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~~~y 401 (417)
T COG2223 362 GFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTWALY 401 (417)
T ss_pred ccchhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988 3446666666666555555543
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.8e-24 Score=220.53 Aligned_cols=318 Identities=14% Similarity=0.076 Sum_probs=220.2
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhhhhHH
Q 047115 58 KFDSQLLAAFTSSLYIAGLIAFLFASKVTRAFGRKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCCYSN 137 (522)
Q Consensus 58 ~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 137 (522)
|++.++.+++.+.+.++..+++++.|+++||+|||+++. .+.++..+
T Consensus 31 ~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~---------------------------------~~~~~~~~ 77 (355)
T TIGR00896 31 GMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVA---------------------------------AGLLLIAA 77 (355)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHH---------------------------------HHHHHHHH
Confidence 789999999999999999999999999999999999999 88888888
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHhhhhhhhccccccccccccccccccccCCcchhHHHHHHHHHHHHHHHHHHHHhhhhc
Q 047115 138 HCSIGGAAFNIYMLILGCVLLGVGIGFTSQSIQRFNQFAYMILLSSNFETTRLSHIDFLLQISICYLILSANLLNYGTQK 217 (522)
Q Consensus 138 ~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~lG~~~~~~~~~~l~~ 217 (522)
+.+.+ .+++.+.+++.|++.|++.+...+....+ +.| +++++++++.++.+.+..+|..+++.++..+.+
T Consensus 78 ~~~~~-~~~~~~~l~~~~~~~g~g~~~~~~~~~~~--------~~~-~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~ 147 (355)
T TIGR00896 78 GILIR-SAPGTALLFAGTALIGVGIAIINVLLPSL--------IKR-DFPQRVGLMTGLYSMALMGGAALAAAATVPLAQ 147 (355)
T ss_pred HHHHH-HhccHHHHHHHHHHHHHHHHHHhccchHH--------HHH-hCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88777 77899999999999999999888887777 888 777544999999999999999999988877764
Q ss_pred cCCCCchHHHHHhhHHHHHHHHHHhcccCCChHHHHHhCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHHhhccccchhH
Q 047115 218 IKGSWGWRISLAMAAVPASILTIGSLFLPETPNSIIQRNKDHQKAEEILQIVRNTTDVKAELDDIIRASSKIIHRIYRPQ 297 (522)
Q Consensus 218 ~~~~~gwr~~f~i~~~~~~~~~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 297 (522)
..+ .+||+.|.+.++..++... .++|+.++ +++ .++. +.+.. ..+.++++.
T Consensus 148 ~~~-~~w~~~f~~~~~~~~~~~~--~~~~~~~~----~~~-~~~~-----------~~~~~-------~~~~~~~~~--- 198 (355)
T TIGR00896 148 HSG-GHWQQALAWWALPALLALL--AWIPQVRR----RVA-ANQT-----------TTRLT-------PVRIWRSPL--- 198 (355)
T ss_pred hhh-hhHHHHHHHHHHHHHHHHH--HHhhhhcc----ccC-CCCC-----------CCCCC-------CchhhcCHh---
Confidence 432 2499988776554433322 23444321 000 0000 00000 002222221
Q ss_pred HHHHHHHHHhhhccchhhHhcHHHHHHHcCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhhc-cchHHHHHHHHHHHHHH
Q 047115 298 LVMAILIPFQQVTRVNVISFNAPVLFMTIKVRKSTSLLMSAVVPDGIGTVSTILPMILADKL-GRTVLFLLGGIQILVSQ 376 (522)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~ 376 (522)
.+......+...........+.|.++++.|++..+.+ ...+...++.++++++.+++.||+ +||+....+.....++.
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~lp~~~~~~g~~~~~~g-~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~ 277 (355)
T TIGR00896 199 AWQVTVFFGLQSGLYYSLIGWLPAILISHGASAATAG-SLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGL 277 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHH
Confidence 1211112222223334456788999988899998888 888899999999999999999999 45666666666666665
Q ss_pred HHHHHHHHHhhCCCCCCcchhhHHHHHHHHHHHHhhhcccccccccccc-ccCchhhhhHHHHHHHHHHHHHHHHHHHHH
Q 047115 377 VMIRSIMAAQLGDHGGFNIGYAYLILFLICVYKAGFAFSRGPLGWLVPS-EIFPLEIRSAGQSITVAVDLLFTFLVAQTF 455 (522)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~ 455 (522)
+.+.... ....+ . ...+++.+.+... +....... +..+++.+++..++.+..++++..++|.+.
T Consensus 278 ~~~~~~~-----------~~~~~--~-~~~l~g~~~g~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~ 342 (355)
T TIGR00896 278 CGLLFAP-----------MHGLW--A-WALVLGLGQGGAF-PLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFV 342 (355)
T ss_pred HHHHHhh-----------hhHHH--H-HHHHHHHhhhhHh-HHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5444321 11111 1 2223333333222 22223323 444567789999999999999999999999
Q ss_pred HHHHHhcc
Q 047115 456 LAMLCHFK 463 (522)
Q Consensus 456 ~~~~~~~g 463 (522)
|.+.|+.+
T Consensus 343 G~l~~~~g 350 (355)
T TIGR00896 343 GVLHDISG 350 (355)
T ss_pred HHHHHHhc
Confidence 99999876
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.9e-24 Score=218.69 Aligned_cols=316 Identities=11% Similarity=0.056 Sum_probs=221.2
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhhhhHH
Q 047115 58 KFDSQLLAAFTSSLYIAGLIAFLFASKVTRAFGRKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCCYSN 137 (522)
Q Consensus 58 ~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 137 (522)
|++..+.|++.+...++..+..+++|+++||+|||+++. .+.++.++
T Consensus 42 g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~---------------------------------~~~~~~~~ 88 (400)
T PRK11646 42 GWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIV---------------------------------TGMLMRAA 88 (400)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHH---------------------------------HHHHHHHH
Confidence 789999999999999999999999999999999999999 99999999
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHhhhhhhhccccccccccccccccccccCCcc-hhHHHHHHHHHHHHHHHHHHHHhhhh
Q 047115 138 HCSIGGAAFNIYMLILGCVLLGVGIGFTSQSIQRFNQFAYMILLSSNFETTRL-SHIDFLLQISICYLILSANLLNYGTQ 216 (522)
Q Consensus 138 ~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~-g~~~~~~~~~~~lG~~~~~~~~~~l~ 216 (522)
+.+.+.++++++.+++.|+++|++.+...+...++ +.| +.|+++ +++.++......+|..+|+.+++.+.
T Consensus 89 ~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~--------~~~-~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~ 159 (400)
T PRK11646 89 GFATMAIAHEPWLLWLSCILSGLGGTLFDPPRTAL--------VIK-LIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL 159 (400)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH--------HHH-hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999888888888 999 888888 99999999999999999999998887
Q ss_pred ccCCCCchHHHHHhhHHHHHHHH-HHhcccCCChHHHHHhCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHHhhccccch
Q 047115 217 KIKGSWGWRISLAMAAVPASILT-IGSLFLPETPNSIIQRNKDHQKAEEILQIVRNTTDVKAELDDIIRASSKIIHRIYR 295 (522)
Q Consensus 217 ~~~~~~gwr~~f~i~~~~~~~~~-~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 295 (522)
. +|||+.|++.++..++.. +..++.||.+. +++ .++.+ ++ .+++++++..
T Consensus 160 -~---~g~~~~f~~~~~~~~~~~i~~~~~~~~~~~----~~~-~~~~~-------------~~-------~~~~~~~~~~ 210 (400)
T PRK11646 160 -Q---YDFRLVCATGAVLFVLAAAFNAWLLPAYKL----STV-RTPVR-------------EG-------MTRVLRDKRF 210 (400)
T ss_pred -H---hhHHHHHHHHHHHHHHHHHHHHHhCCcccc----ccc-chhhH-------------HH-------HHHHHcCchH
Confidence 2 389999998766655433 33345555311 001 11100 00 1122322222
Q ss_pred hHHHHHHHHHHhhhccchhhHhcHHHHHHHcCCCCchhhHHHhHHHHHHHHHHHHhHHHHhh-hccchHHHHHHHHHHHH
Q 047115 296 PQLVMAILIPFQQVTRVNVISFNAPVLFMTIKVRKSTSLLMSAVVPDGIGTVSTILPMILAD-KLGRTVLFLLGGIQILV 374 (522)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-r~g~~~~~~~~~~~~~~ 374 (522)
...... .+...........+.|.+.++.+.++.+.+ .......+....+....+++.| |++.++.+..+.....+
T Consensus 211 ~~~~~~---~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g-~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~ 286 (400)
T PRK11646 211 VTYVLT---LTGYYMLAVQVMLMLPIMVNDIAGSPSAVK-WMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSL 286 (400)
T ss_pred HHHHHH---HHHHHHHHHHHHHhhhhhHHhhcCCchHHH-HHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 211111 111111112234567888877666666676 6666666666655555565554 56666666666665555
Q ss_pred HHHHHHHHHHHhhCCCCCCcchhhHHHHHHHHHHHHhhhccccccccccccccCchhhhhHHHHHHHHHHHHHHHHHHHH
Q 047115 375 SQVMIRSIMAAQLGDHGGFNIGYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLVAQT 454 (522)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~ 454 (522)
+..++... +..+.......++..+.... .|...++..+..|++.||++.|+.+....++..++|.+
T Consensus 287 ~~~~l~~~-------------~~~~~~~~~~~l~~~g~~~~-~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l 352 (400)
T PRK11646 287 SMFPIGMV-------------SNLQQLFTLICLFYIGSIIA-EPARETLSASLADARARGSYMGFSRLGLALGGAIGYIG 352 (400)
T ss_pred HHHHHHHh-------------hhHHHHHHHHHHHHHHHHHH-HccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccc
Confidence 55444332 11222223333333333322 23444666799999999999999999999999999999
Q ss_pred HHHHHHhc
Q 047115 455 FLAMLCHF 462 (522)
Q Consensus 455 ~~~~~~~~ 462 (522)
.|.+.++.
T Consensus 353 ~G~l~~~~ 360 (400)
T PRK11646 353 GGWLFDLG 360 (400)
T ss_pred hHHHHHHH
Confidence 99999875
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.3e-23 Score=213.47 Aligned_cols=319 Identities=13% Similarity=0.133 Sum_probs=217.9
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhhhhHH
Q 047115 58 KFDSQLLAAFTSSLYIAGLIAFLFASKVTRAFGRKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCCYSN 137 (522)
Q Consensus 58 ~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 137 (522)
|+++.+.+++.+.+.++..++++++|+++||+|||+++. .+..+.++
T Consensus 39 ~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~---------------------------------~~~~~~~~ 85 (394)
T PRK11652 39 NVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVIL---------------------------------VGMSIFIL 85 (394)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHH---------------------------------HHHHHHHH
Confidence 789999999999999999999999999999999999999 89999999
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHhhhhhhhccccccccccccccccccccCCcc-hhHHHHHHHHHHHHHHHHHHHHhhhh
Q 047115 138 HCSIGGAAFNIYMLILGCVLLGVGIGFTSQSIQRFNQFAYMILLSSNFETTRL-SHIDFLLQISICYLILSANLLNYGTQ 216 (522)
Q Consensus 138 ~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~-g~~~~~~~~~~~lG~~~~~~~~~~l~ 216 (522)
+.+++.++++++.+++.|++.|++.+...+....+ ..| ..++++ +++.++.+.+..+|..++|.+++.+.
T Consensus 86 ~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~--------~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~ 156 (394)
T PRK11652 86 GTLVALFAHSLTVLIAASAIQGLGTGVGGVMARTL--------PRD-LYEGTQLRHANSLLNMGILVSPLLAPLIGGLLT 156 (394)
T ss_pred HHHHHHHHccHHHHHHHHHHHHhhhhHHHHHHHHH--------HHH-hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998877777777 888 888888 99999999999999999999998876
Q ss_pred ccCCCCchHHHHHhhHHHHHHH-HHHhcccCCChHHHHHhCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHHhhccccch
Q 047115 217 KIKGSWGWRISLAMAAVPASIL-TIGSLFLPETPNSIIQRNKDHQKAEEILQIVRNTTDVKAELDDIIRASSKIIHRIYR 295 (522)
Q Consensus 217 ~~~~~~gwr~~f~i~~~~~~~~-~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 295 (522)
+. .|||+.|++.++..++. ....++.||+++. +++ +++.++ ..++.++++..
T Consensus 157 ~~---~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~--------------------~~~~~~~~~~~ 209 (394)
T PRK11652 157 TL---FGWRACYLFLLLLGAGVTFSMARWMPETRPA---DAR-RTRVLA--------------------SYRTLLSNRRF 209 (394)
T ss_pred hc---cChHHHHHHHHHHHHHHHHHHHHhCCccCcc---ccc-hhHHHH--------------------HHHHHHcChHH
Confidence 43 48999998876655443 3344567876531 111 111010 01122332222
Q ss_pred hHHHHHHHHHHhhhccchhhHhcHHHHHHH-cCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhhccchHHHHHHHHHHHH
Q 047115 296 PQLVMAILIPFQQVTRVNVISFNAPVLFMT-IKVRKSTSLLMSAVVPDGIGTVSTILPMILADKLGRTVLFLLGGIQILV 374 (522)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~ 374 (522)
+...... +........+..+.+.++++ .|++..+.+ .......++.+++..+.+++.||.+++... ......+
T Consensus 210 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~--~~~~~~~ 283 (394)
T PRK11652 210 NCYLLML---IGTLAGIAVFEACSGVLMGAVLGLSSMTVS-ILFILPIPAAFFGAWFAGRPNKRFSTLMWQ--SVICCLL 283 (394)
T ss_pred HHHHHHH---HHHHHHHHHHHHhChHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH
Confidence 2222221 11122223334455666655 788888888 777777888888888899999988843322 2222222
Q ss_pred HHHHHHHHHHHhhCCCCCCcchhhHHHHHHHHHHHHhhhccccccccccccccCchhhhhHHHHHHHHHHHHHHHHHHHH
Q 047115 375 SQVMIRSIMAAQLGDHGGFNIGYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLVAQT 454 (522)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~ 454 (522)
+.+.+...... .....+......++...+.+.. .+....+..|..| ++++++.++.+....++..+++.+
T Consensus 284 ~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~ 353 (394)
T PRK11652 284 AGLLMWIPGWF--------GVMNVWTLLVPAALFFFGAGML-FPLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALL 353 (394)
T ss_pred HHHHHHHHHHh--------ccccHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHH
Confidence 22222111100 1112233333444444444433 3333455567776 578999999999999999999998
Q ss_pred HHHHHHh
Q 047115 455 FLAMLCH 461 (522)
Q Consensus 455 ~~~~~~~ 461 (522)
.+.+.+.
T Consensus 354 ~~~~~~~ 360 (394)
T PRK11652 354 SAMLPQT 360 (394)
T ss_pred HHHccCC
Confidence 8876554
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-23 Score=218.29 Aligned_cols=347 Identities=11% Similarity=0.039 Sum_probs=237.0
Q ss_pred HHHHHHHHhhhhhcchhhccccccHHHHHHhhhhhhhcccCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 047115 9 CIVAATSGLIFGYDIGVSGGVTLMEPFLKKCFLEVYKKMKEDPKISNYGKFDSQLLAAFTSSLYIAGLIAFLFASKVTRA 88 (522)
Q Consensus 9 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr 88 (522)
.++.+...+..|++.+..++.. |.+++++ |++..+.|++.+.+++++.+++++.|++.||
T Consensus 5 ~~~~~~~f~~~G~~~~~~~~l~--~~~~~~~------------------~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r 64 (410)
T TIGR00885 5 FALITSLFALWGFANDITNPMV--PQFQQAF------------------TLTAFQAALVQSAFYGGYFIMAIPAAIFMKK 64 (410)
T ss_pred HHHHHHHHHHHHHHHHhHHHHH--HHHHHHh------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566788888888887775 6776666 7899999999999999999999999999999
Q ss_pred hccccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhhhhHHHHHHHhh---hhhhHHHHHHHHHHHhhhhhh
Q 047115 89 FGRKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCCYSNHCSIGGA---AFNIYMLILGCVLLGVGIGFT 165 (522)
Q Consensus 89 ~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---a~~~~~l~~~r~l~G~~~g~~ 165 (522)
+|||+++. .+.++++++.++... .++++.+++.|++.|+|.|..
T Consensus 65 ~G~r~~~~---------------------------------~g~~l~~~g~~l~~~~~~~~~~~~~l~~~~l~G~g~g~~ 111 (410)
T TIGR00885 65 LSYKAGIL---------------------------------LGLFLYALGAFLFWPAAEIMNYTLFLVGLFILTAGLGFL 111 (410)
T ss_pred hCchHHHH---------------------------------HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhHHHH
Confidence 99999999 999999999888644 368999999999999999999
Q ss_pred hccccccccccccccccccccCCcc-hhHHHHHHHHHHHHHHHHHHHHhhhhccC-----------------------CC
Q 047115 166 SQSIQRFNQFAYMILLSSNFETTRL-SHIDFLLQISICYLILSANLLNYGTQKIK-----------------------GS 221 (522)
Q Consensus 166 ~~~~~~~~~~~~~~~i~~~~~~~~~-g~~~~~~~~~~~lG~~~~~~~~~~l~~~~-----------------------~~ 221 (522)
.+....+ +.+ ..|+++ ++..++.+...++|..+++.++..+.... +.
T Consensus 112 ~~~~~~~--------~~~-~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (410)
T TIGR00885 112 ETAANPY--------ILV-MGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDL 182 (410)
T ss_pred HhhhhHH--------HHH-HCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHH
Confidence 9999999 999 888888 99999999999999999999987664221 11
Q ss_pred CchHHHHHhhHHHHHHHHHHhc--ccCCChHHHHHhCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHHhhccccchhHHH
Q 047115 222 WGWRISLAMAAVPASILTIGSL--FLPETPNSIIQRNKDHQKAEEILQIVRNTTDVKAELDDIIRASSKIIHRIYRPQLV 299 (522)
Q Consensus 222 ~gwr~~f~i~~~~~~~~~~~~~--~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 299 (522)
.+||++|.+.++..++..+... ..||.++ ++ .++ . +..++.+ ++++++..+...
T Consensus 183 ~~w~~~fl~~a~~~~~~~~~~~~~~~p~~~~-----~~-~~~-~----------~~~~~~~-------~~~~~~~~~~~~ 238 (410)
T TIGR00885 183 ASVQTPYMIIGAVVLAVALLIMLTKMPALNH-----SD-AKQ-I----------SFSASLS-------RLARIRHYREGV 238 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc-----cc-ccc-c----------cchhhHH-------HHHhChhHHHHH
Confidence 3699999877665554433332 2444211 00 000 0 0000000 223333233323
Q ss_pred HHHHHHHhhhccchhhHhcHHHHHHHc--CCCCchhhHHHhHHHHHHHHHHHHhHHHHhhhccchHHHHHHHHHHHHHHH
Q 047115 300 MAILIPFQQVTRVNVISFNAPVLFMTI--KVRKSTSLLMSAVVPDGIGTVSTILPMILADKLGRTVLFLLGGIQILVSQV 377 (522)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~ 377 (522)
+..+++ .........|.+.+.++. +.+..... ........+..+|+++++++.||+++|+++.+......+..+
T Consensus 239 l~~f~y---vg~e~~~~s~l~~y~~~~~~~~~~~~a~-~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~l 314 (410)
T TIGR00885 239 IAQFFY---VGVQIMCWTFIIQYAVRLIPGMTAGFAA-NYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCL 314 (410)
T ss_pred HHHHHH---HHHHHHHHHHHHHHHhhccCCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH
Confidence 232222 222223446677777654 33333334 445555678899999999999999999988777666666555
Q ss_pred HHHHHHHHhhCCCCCCcchhhHHHHHHHHHHHHhhhccccccccccccccCchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 047115 378 MIRSIMAAQLGDHGGFNIGYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLVAQTFLA 457 (522)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~ 457 (522)
+.... + +. .......+.+.+.+..+ |..+....+..+++.+..+.++..+. +|+.+.|++.|.
T Consensus 315 l~~~~-----------~-~~--~~~~~l~~~glf~s~~f-p~i~sl~~~~~g~~~~~~s~~l~~~~--~Gga~~p~l~G~ 377 (410)
T TIGR00885 315 GSIFA-----------G-GH--VGLYCLTLCSAFMSLMF-PTIYGIALKGLGQDTKYGAAGLVMAI--IGGGIVPPLQGF 377 (410)
T ss_pred HHHHc-----------C-Ch--HHHHHHHHHHHHHHHHH-HHHHHHHHhhhhhhhhhhHHHHHHHH--hccchHHHHHHH
Confidence 54432 1 11 12233333334444444 45556666778876655555555544 899999999999
Q ss_pred HHHhc
Q 047115 458 MLCHF 462 (522)
Q Consensus 458 ~~~~~ 462 (522)
+.|+.
T Consensus 378 ~~d~~ 382 (410)
T TIGR00885 378 IIDMK 382 (410)
T ss_pred HHHHh
Confidence 99954
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.6e-23 Score=214.23 Aligned_cols=361 Identities=12% Similarity=0.034 Sum_probs=245.3
Q ss_pred HHHHHhhhhhcchhhccccccHHHHHHhhhhhhhcccCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 047115 12 AATSGLIFGYDIGVSGGVTLMEPFLKKCFLEVYKKMKEDPKISNYGKFDSQLLAAFTSSLYIAGLIAFLFASKVTRAFGR 91 (522)
Q Consensus 12 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Gr 91 (522)
..++.+.+.+..++..+.. |.+.+++ |+|.++.|++.+++.++..++++++|+++||+||
T Consensus 9 l~~~~~~~~~~~~~~~p~l--~~~l~~~------------------g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~ 68 (382)
T TIGR00902 9 LALGFFGYFCAYGIFLPFF--PAWLKGI------------------GLGEEMIGLLIGAALIARFAGGLFFAPLIKDANH 68 (382)
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHc------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 3444555555556665553 6666665 7899999999999999999999999999999998
Q ss_pred ccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhhhhHHHHHHHhhhhhhHHHHHHHHHHHhhhhhhhccccc
Q 047115 92 KASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCCYSNHCSIGGAAFNIYMLILGCVLLGVGIGFTSQSIQR 171 (522)
Q Consensus 92 k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~ 171 (522)
|.... + ....+..+..+ ..+..+++++.+++.|+++|.+.+...|...+
T Consensus 69 ~~~~~-----------------------~------~~~~~~~l~~~--~~~~~~~~~~~l~~~~~l~~~~~~~~~p~~~a 117 (382)
T TIGR00902 69 IIIAL-----------------------R------LLALASAIFAA--AFSAGAHNAWLLFIAIGLFALFFSAGMPIGDA 117 (382)
T ss_pred HHHHH-----------------------H------HHHHHHHHHHH--HHHHhhhhHHHHHHHHHHHHHHHccchhHHHH
Confidence 54332 0 00022222222 24446789999999999999998888888777
Q ss_pred cccccccccccccccCCcchhHHHHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHhhHHHHHHHHHHhcccCCChHH
Q 047115 172 FNQFAYMILLSSNFETTRLSHIDFLLQISICYLILSANLLNYGTQKIKGSWGWRISLAMAAVPASILTIGSLFLPETPNS 251 (522)
Q Consensus 172 ~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~gwr~~f~i~~~~~~~~~~~~~~lpesp~~ 251 (522)
+ ..+ + ++++++..+......++|.++++.+++.+.+. +|||..|++..+..++.+... .++|+++
T Consensus 118 l--------~~~-~-~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~---~g~~~~f~~~~~~~~~~~~~~-~~~~~~~- 182 (382)
T TIGR00902 118 L--------ANT-W-QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGM---FDEQNILAILTAGLAFMLIGF-LIKPTIP- 182 (382)
T ss_pred H--------HHH-H-HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHH---cChhHHHHHHHHHHHHHHHHH-HcCCCCC-
Confidence 7 666 4 43348899999999999999999998888754 489999887655433333333 3333321
Q ss_pred HHHhCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHHhhccccchhHHHHHHHHHHhhhccchhhHhcHHHHHHHcCCCCc
Q 047115 252 IIQRNKDHQKAEEILQIVRNTTDVKAELDDIIRASSKIIHRIYRPQLVMAILIPFQQVTRVNVISFNAPVLFMTIKVRKS 331 (522)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 331 (522)
++++ .++.+ . +..++ ..++++++. .+......+...........+.|.++++.|.+..
T Consensus 183 --~~~~-~~~~~--------~-~~~~~-------~~~~l~~~~---~~~~l~~~~l~~~~~~~~~~~~~~~l~~~g~s~~ 240 (382)
T TIGR00902 183 --PKDA-IPEDE--------S-QGDSA-------FIALLKNPM---NLRFLAAVCLIQGAHAAYYGFSAIYWQAAGISAS 240 (382)
T ss_pred --CCcc-ccccc--------c-ccchh-------HHHHHcChH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHh
Confidence 0000 00000 0 00000 113333322 2222222232333344556677888888999999
Q ss_pred hhhHHHhHHHHHHHHHHHHhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcchhhHHHHHHHHHHHHh
Q 047115 332 TSLLMSAVVPDGIGTVSTILPMILADKLGRTVLFLLGGIQILVSQVMIRSIMAAQLGDHGGFNIGYAYLILFLICVYKAG 411 (522)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (522)
+.+ .......+..+++..+.+++.||+++|+.+.++.....+....+... +..+......++.+..
T Consensus 241 ~~g-~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~-------------~~~~~~~~~q~l~g~~ 306 (382)
T TIGR00902 241 ATG-LLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAI-------------EAFPLIFLLQILHCGT 306 (382)
T ss_pred HHH-HHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhH-------------hhHHHHHHHHHHHHHH
Confidence 998 78888899999999999999999999999998888888877666543 2334445555666666
Q ss_pred hhccccccccccccccCchhhhhHHHHHHHH-HHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHH
Q 047115 412 FAFSRGPLGWLVPSEIFPLEIRSAGQSITVA-VDLLFTFLVAQTFLAMLCHFKAGVFFCFGGWVAF 476 (522)
Q Consensus 412 ~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i 476 (522)
++..... ...++++. |++.|++++++.++ ...++..+++.+.|.+.|+.+...++..+.+.++
T Consensus 307 ~~~~~~~-~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~~~~~~~~~~~~~ 370 (382)
T TIGR00902 307 FAVCHLA-AMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGAGTFVFMAIIAAA 370 (382)
T ss_pred HHHHHHH-HHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 6554443 34566676 99999999999874 5678999999999999999987667666665544
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.5e-23 Score=216.87 Aligned_cols=324 Identities=10% Similarity=0.035 Sum_probs=222.9
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhhhhHH
Q 047115 58 KFDSQLLAAFTSSLYIAGLIAFLFASKVTRAFGRKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCCYSN 137 (522)
Q Consensus 58 ~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 137 (522)
|++..+.|++.+.+.+++.+++++.|+++||+|||++++ .+.++.++
T Consensus 39 g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~---------------------------------~~~~~~~~ 85 (395)
T PRK10054 39 SLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYML---------------------------------LAITAFAS 85 (395)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHH---------------------------------HHHHHHHH
Confidence 789999999999999999999999999999999999999 89999999
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHhhhhhhhccccccccccccccccccccCCcc-hhHHHHHHHHHHHHHHHHHHHHhhhh
Q 047115 138 HCSIGGAAFNIYMLILGCVLLGVGIGFTSQSIQRFNQFAYMILLSSNFETTRL-SHIDFLLQISICYLILSANLLNYGTQ 216 (522)
Q Consensus 138 ~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~-g~~~~~~~~~~~lG~~~~~~~~~~l~ 216 (522)
+.+..+++++++.++++|++.|.+.+...+....+ ..| ..++++ ++..++.....++|..++|.+++.+.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--------~~~-~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~ 156 (395)
T PRK10054 86 GFIAIPLVNNVTLVVLFFALINCAYSVFSTVLKAW--------FAD-NLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLV 156 (395)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHH-hcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998888777888888 899 888888 99999999999999999999999876
Q ss_pred ccCCCCchHHHHHhhHHHHHHHHHH-hcccCCChHHHHHhCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHHhhccccch
Q 047115 217 KIKGSWGWRISLAMAAVPASILTIG-SLFLPETPNSIIQRNKDHQKAEEILQIVRNTTDVKAELDDIIRASSKIIHRIYR 295 (522)
Q Consensus 217 ~~~~~~gwr~~f~i~~~~~~~~~~~-~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 295 (522)
. .+||..|.+.++..++..+. .+++||+++. +++ +++ +. . + .++.++++..
T Consensus 157 ~----~g~~~~f~~~~~~~~i~~i~~~~~~~~~~~~---~~~-~~~--~~-------------~-~----~~~~~~~~~~ 208 (395)
T PRK10054 157 M----QSINLPFWLAAICSAFPLVFIQIWVQRSEKA---IAT-ETG--SV-------------W-S----PSVLLQDKAL 208 (395)
T ss_pred H----hccCcHHHHHHHHHHHHHHHHHHHHhccccc---ccc-chh--hh-------------h-h----hhhhccCcee
Confidence 3 37999999877766655433 3445554310 001 000 00 0 0 0133333333
Q ss_pred hHHHHHHHHH-HhhhccchhhHhcHHHHH---HHcCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhhccchHHHHHHHHH
Q 047115 296 PQLVMAILIP-FQQVTRVNVISFNAPVLF---MTIKVRKSTSLLMSAVVPDGIGTVSTILPMILADKLGRTVLFLLGGIQ 371 (522)
Q Consensus 296 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~ 371 (522)
+......++. +.. .....+.+.+. .+.+.+....+ .......+.........+++.||.++|+.+..+...
T Consensus 209 ~~~~~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~ 283 (395)
T PRK10054 209 LWFTCSGFLASFVS----GAFASCISQYVMVVADSDFAEKVVA-VVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLC 283 (395)
T ss_pred hHHHHHHHHHHHHH----HHhhhhHHHHHHHhcccchHHHHHH-HHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHH
Confidence 2222222221 221 11222333433 23344444555 556666666666777888999999999988877766
Q ss_pred HHHHHHHHHHHHHHhhCCCCCCcchhhHHHHHHHHHHHHhhhccccccccccccccCchhhhhHHHHHHHHHHHHHHHHH
Q 047115 372 ILVSQVMIRSIMAAQLGDHGGFNIGYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLV 451 (522)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~ 451 (522)
..++...+.... +..+...+...++..+... ..|.....+.+..|++.|++..+..+ ...++..++
T Consensus 284 ~~~~~~~~~~~~------------~~~~~~~~~~~~~~~g~~~-~~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~G 349 (395)
T PRK10054 284 FVIGLVGFIFSG------------NSLLLWGMSAAVFTVGEII-YAPGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAIN 349 (395)
T ss_pred HHHHHHHHHHcc------------hHHHHHHHHHHHHHHHHHH-HHhhHHHHHHHhCCcccceehHhHHH-HHHHHHHHH
Confidence 666655443321 1122223333344444332 23344456678889999999988655 667899999
Q ss_pred HHHHHHHHHhccchhhHHH
Q 047115 452 AQTFLAMLCHFKAGVFFCF 470 (522)
Q Consensus 452 ~~~~~~~~~~~g~~~~~~~ 470 (522)
|.+.|.+.|+.+...++..
T Consensus 350 p~~~G~l~~~~g~~~~~~~ 368 (395)
T PRK10054 350 PLVSGVILTTLPPWSLFVI 368 (395)
T ss_pred HHHHHHHHHHcChhhHHHH
Confidence 9999999999986544433
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-23 Score=214.65 Aligned_cols=321 Identities=14% Similarity=0.073 Sum_probs=209.9
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhhhhHH
Q 047115 58 KFDSQLLAAFTSSLYIAGLIAFLFASKVTRAFGRKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCCYSN 137 (522)
Q Consensus 58 ~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 137 (522)
|+|+.+.+++.+.+.+++.++++++|+++||+|||+.++ .+.++.++
T Consensus 33 ~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~---------------------------------~~~~~~~i 79 (366)
T TIGR00886 33 GLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTT---------------------------------LSLLLLAI 79 (366)
T ss_pred CCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHH---------------------------------HHHHHHHH
Confidence 789999999999999999999999999999999999999 99999999
Q ss_pred HHHHHhhhh-hhHHHHHHHHHHHhhhhhhhccccccccccccccccccccCCcc-hhHHHHHHHHHHHHHHHHHHHHhhh
Q 047115 138 HCSIGGAAF-NIYMLILGCVLLGVGIGFTSQSIQRFNQFAYMILLSSNFETTRL-SHIDFLLQISICYLILSANLLNYGT 215 (522)
Q Consensus 138 ~~~~~~~a~-~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~-g~~~~~~~~~~~lG~~~~~~~~~~l 215 (522)
+.+++++++ +++.+++.|+++|++.+. .+....+ ++| ++|+++ +++.++......+|..+++.++..+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~--------~~~-~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l 149 (366)
T TIGR00886 80 PCLWAGLAVQSYSVLLLLRLFIGIAGGS-FASCMPW--------ISF-FFPKKIQGTALGLAAGWGNMGGGVAQFVMPPI 149 (366)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhchh-hHhHHHH--------HHH-hcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 999999999 999999999999998654 4556667 899 888877 9999999977777777777666554
Q ss_pred hccC-------CCCchHHHHHh--hHHHHHHHHHHhcccCCChHHHHHhCCCHHHHHHHHHHHcCCcchHHHHHHHHHHH
Q 047115 216 QKIK-------GSWGWRISLAM--AAVPASILTIGSLFLPETPNSIIQRNKDHQKAEEILQIVRNTTDVKAELDDIIRAS 286 (522)
Q Consensus 216 ~~~~-------~~~gwr~~f~i--~~~~~~~~~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (522)
.... ...+||+.|++ ..+..+...+...+.+|+|+. +++ .++.+. ++.+ ....++..+ ..
T Consensus 150 ~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~--~~~~-~~~~~~~~~----~~ 218 (366)
T TIGR00886 150 IGSLIFGAGLPAHLAWGWAFVIVPAGILLLPALLIFFVGADTPPG---KPA-TGKLSF--KGAR-WSVGTGALG----DQ 218 (366)
T ss_pred HHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHhcccCCcc---ccc-chhccc--cccc-ccccchhHH----HH
Confidence 4310 12479999843 333333444445556776531 111 111000 0000 000000111 11
Q ss_pred HhhccccchhHHHHHHHHHHhhhccchhhHhcHHHHHH-HcCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhhccchHHH
Q 047115 287 SKIIHRIYRPQLVMAILIPFQQVTRVNVISFNAPVLFM-TIKVRKSTSLLMSAVVPDGIGTVSTILPMILADKLGRTVLF 365 (522)
Q Consensus 287 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~ 365 (522)
.+.++++..+... ...+...........+.|.+++ ..|++..+.+ .......+.+++++++.++++||+++|+..
T Consensus 219 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~ 294 (366)
T TIGR00886 219 LKVFRDRHTWILA---LLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAG-AYASLGGLLGSLARPLGGAISDRLGGARKL 294 (366)
T ss_pred HHHHhccchhhHH---HHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHH-HHHHHHHHHHHHHhhccchHHHhhccchhH
Confidence 1333332222222 2222222233445667777775 4688888888 788888899999999999999999999877
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCCCCcchhhHHHHHHHHHHHHhhhccccccccccccccCchhhhhHHHHHHHHHHH
Q 047115 366 LLGGIQILVSQVMIRSIMAAQLGDHGGFNIGYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDL 445 (522)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ 445 (522)
..+......+..++..... .+...+...........+.+...+ ..+...++..| +++|++.|+.+..++
T Consensus 295 ~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~-~~~g~~~g~~~~~~~ 363 (366)
T TIGR00886 295 LMSFLGVAMGAFLVVLGLV---------SPLSLAVFIVLFVALFFFSGAGNG-STFALVPHIFR-RATGAVSGLVGAIGN 363 (366)
T ss_pred HHHHHHHHHHHHHHHhcCC---------CcchHHHHHHHHHHHHHHhccccc-hhhhcchhhch-hhcccHHHHHHHhcc
Confidence 7666655555444433210 000233333333333344443333 34456677777 689999999888776
Q ss_pred HH
Q 047115 446 LF 447 (522)
Q Consensus 446 ~~ 447 (522)
++
T Consensus 364 ~g 365 (366)
T TIGR00886 364 LG 365 (366)
T ss_pred CC
Confidence 54
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.9e-23 Score=214.61 Aligned_cols=352 Identities=10% Similarity=0.034 Sum_probs=222.8
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhcc-ccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhhhhH
Q 047115 58 KFDSQLLAAFTSSLYIAGLIAFLFASKVTRAFGR-KASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCCYS 136 (522)
Q Consensus 58 ~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Gr-k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 136 (522)
|++..+.|++.+++.++..++++++|.++||+|| |+++. .+.++.+
T Consensus 34 g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~---------------------------------~~~~~~~ 80 (418)
T TIGR00889 34 HFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYA---------------------------------VCHFAGA 80 (418)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHH---------------------------------HHHHHHH
Confidence 7899999999999999999999999999999965 76777 7888888
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHhhhhhhhcccccccccccccccc----ccccCCcc-hhHHHHHHHHHHHHHHHHHHH
Q 047115 137 NHCSIGGAAFNIYMLILGCVLLGVGIGFTSQSIQRFNQFAYMILLS----SNFETTRL-SHIDFLLQISICYLILSANLL 211 (522)
Q Consensus 137 ~~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~i~----~~~~~~~~-g~~~~~~~~~~~lG~~~~~~~ 211 (522)
++..+..+.++++.+.+.|++.|++.+...+...+.. .+... | ...... .+..| .+|.++++.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~----~~~~~~~g~~-~~~~~~~~r~~G------~lG~~ig~~l 149 (418)
T TIGR00889 81 LLLFFAAQVTTPAGMFPVLLANSLAYMPTIALTNSIS----YANLPQAGLD-VVTDFPPIRVMG------TIGFIAAMWA 149 (418)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHccHHHHHHHHH----HHHHhhcCCC-chhcCCCeeeeh------hHHHHHHHHH
Confidence 8888888889999999999999998776666554430 00011 2 122112 33333 3577777777
Q ss_pred HhhhhccCCCCchHHHHHhhHHHHHHHHHHhcccCCChHHHHHhCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHHhhcc
Q 047115 212 NYGTQKIKGSWGWRISLAMAAVPASILTIGSLFLPETPNSIIQRNKDHQKAEEILQIVRNTTDVKAELDDIIRASSKIIH 291 (522)
Q Consensus 212 ~~~l~~~~~~~gwr~~f~i~~~~~~~~~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 291 (522)
++.+... ..|+. |++.++..++..+..+++||+|+. ++++ +.+.++ . ......++++
T Consensus 150 ~g~l~~~---~~~~~-f~~~~~~~~~~~~~~~~~~e~~~~--~~~~-~~~~~~-------------~---~~~~~~~~~k 206 (418)
T TIGR00889 150 VSLLDIE---LSNIQ-LYITAGSSALLGVFALTLPDIPVA--KSTA-KMSIKV-------------M---LGLDAFILFK 206 (418)
T ss_pred HHHhccc---chhHH-HHHHHHHHHHHHHHHhcCCCCCCC--cccc-ccCHHH-------------H---hhhhHHHHhc
Confidence 7666321 24554 445444444444556678887631 0111 000000 0 0000012333
Q ss_pred ccchhHHHHHHHHHHhhhccchhhHhcHHHHHHHcCCCC--------chhhHHHhHHHHHHHHHHHHhHHHHhhhccchH
Q 047115 292 RIYRPQLVMAILIPFQQVTRVNVISFNAPVLFMTIKVRK--------STSLLMSAVVPDGIGTVSTILPMILADKLGRTV 363 (522)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--------~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~ 363 (522)
++.........++. .........+.+.++++.|.++ ...+ ...+...+..+++.+..++++||+|+|+
T Consensus 207 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g-~~~~~~~i~~i~~~~~~g~l~dr~g~r~ 282 (418)
T TIGR00889 207 NKRMAIFFFFSMLL---GAPLQITNIFGNGFLHEFGRNPEFADSFVVKNAS-IWMSLSQFSEIFFILTIPFFLKRFGIKK 282 (418)
T ss_pred CCCeeeHHHHHHHH---HhHHHHHHHhHHHHHHHhcccccccchhhhhhHH-HHHHHHHHHHHHHHHHHHHHHHHhCcHH
Confidence 33222222222221 1112233355577777666554 4446 7778888899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcch-hhHHHHHHHHHHHHhhhccccccccccccccCchhhhhHHHHHHH-
Q 047115 364 LFLLGGIQILVSQVMIRSIMAAQLGDHGGFNIG-YAYLILFLICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITV- 441 (522)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~- 441 (522)
++..+.+...++..++.... ... ..+...+..++.+.+.+.. .+....+++|.+|++.|++++|+.+
T Consensus 283 ~l~~~~~~~~v~~~l~~~~~----------~~~~~~~~l~l~~~l~g~~~~~~-~~~~~~~i~~~~p~~~~g~~~g~~~~ 351 (418)
T TIGR00889 283 VMLLSLVAWALRFGFFAYGD----------PEYFGYALLFLSMIVYGCAFDFF-NISGSVFVEKEVPVHIRASAQGLFTL 351 (418)
T ss_pred HHHHHHHHHHHHHHHHHHcC----------cchhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCHHHHHHHHHHHHH
Confidence 99988887776655444310 111 1122233334444443322 3343456689999999999999997
Q ss_pred HHHHHHHHHHHHHHHHHHHhcc------c-hhhHHHHHHHHHHHHHHHhhccCCCCC
Q 047115 442 AVDLLFTFLVAQTFLAMLCHFK------A-GVFFCFGGWVAFMTTFVHFFLPETKYM 491 (522)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~~~g------~-~~~~~~~~~~~i~~~~~~~~~~~~~~~ 491 (522)
....++..++|.+.|.+.++.+ | ..+.+.+++..+.+++.+++++|+++.
T Consensus 352 ~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~~~ 408 (418)
T TIGR00889 352 MCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYSHNA 408 (418)
T ss_pred HHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCcccC
Confidence 5678899999999999999854 3 345566666677777777788876543
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.1e-22 Score=206.81 Aligned_cols=364 Identities=12% Similarity=0.065 Sum_probs=233.5
Q ss_pred HhhhhhcchhhccccccHHHHHHhhhhhhhcccCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhh-----c
Q 047115 16 GLIFGYDIGVSGGVTLMEPFLKKCFLEVYKKMKEDPKISNYGKFDSQLLAAFTSSLYIAGLIAFLFASKVTRAF-----G 90 (522)
Q Consensus 16 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~-----G 90 (522)
++.+|+..+...... |.++++. |+|.+++|++..+... .+..+++|+++||+ |
T Consensus 8 ~~~~~~~~~~~~~~~--~~~l~~~------------------g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g 65 (402)
T PRK11902 8 GFASGLPLALTSGTL--QAWMTVE------------------GLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLG 65 (402)
T ss_pred HHHHhhhHHHHHHHH--HHHHHHc------------------CCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCC
Confidence 456666666666554 7777665 7899999999777665 69999999999999 8
Q ss_pred ccc-ccccccccCcccchhhhhhhhhhhhhhhhcccccccchhhhhHHHHHHHhhh---hhhHHHHHHHHHHHhhhhhhh
Q 047115 91 RKA-SILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCCYSNHCSIGGAA---FNIYMLILGCVLLGVGIGFTS 166 (522)
Q Consensus 91 rk~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a---~~~~~l~~~r~l~G~~~g~~~ 166 (522)
||| .++ .+.++.+++....++. .+++.+.+..++.++..+...
T Consensus 66 ~rr~~l~---------------------------------~~~~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~ 112 (402)
T PRK11902 66 RRRGWLL---------------------------------LTQVGLAASIAAMAFCPPHAALWPLAGLAVLVAFLSASQD 112 (402)
T ss_pred cchhHHH---------------------------------HHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHH
Confidence 876 566 7777777777776666 457778888888888888888
Q ss_pred ccccccccccccccccccccCCcc-hhHHHHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHhhHHHHHHHHHHhccc
Q 047115 167 QSIQRFNQFAYMILLSSNFETTRL-SHIDFLLQISICYLILSANLLNYGTQKIKGSWGWRISLAMAAVPASILTIGSLFL 245 (522)
Q Consensus 167 ~~~~~~~~~~~~~~i~~~~~~~~~-g~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~gwr~~f~i~~~~~~~~~~~~~~l 245 (522)
+...++ +.| +.|+++ +++.++...+..+|.++++.++..+.+.. +|||..|++.++..++..+..++.
T Consensus 113 ~~~~al--------~~~-~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~--~gw~~~f~i~a~~~l~~~l~~~~~ 181 (402)
T PRK11902 113 IVFDAY--------STD-VLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRV--LGWGNTYLLMAGLMLAGALTTLWA 181 (402)
T ss_pred HHHHHH--------HHH-hcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcc--cCHHHHHHHHHHHHHHHHHHHHhc
Confidence 888888 999 888887 99999999999999999999888776432 389999998777665555555667
Q ss_pred CCChHHHHHhCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHHhhccccchhHHHHHHHHH-HhhhccchhhHhcHHHHHH
Q 047115 246 PETPNSIIQRNKDHQKAEEILQIVRNTTDVKAELDDIIRASSKIIHRIYRPQLVMAILIP-FQQVTRVNVISFNAPVLFM 324 (522)
Q Consensus 246 pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 324 (522)
||+++. +++ .++.++ +..+..+++++++..+.......+. ..... ......+.+.+
T Consensus 182 ~e~~~~---~~~-~~~~~~----------------~~~~~~~~l~~~~~~~~~l~~~~l~~~~~~~---~~~~~~~~l~~ 238 (402)
T PRK11902 182 PEPEVP---ARP-PRSLGE----------------AVVGPLRDFFSRRGAWALLLLIVLYKLGDAF---AGSLSTTFLIR 238 (402)
T ss_pred CCCccc---ccc-cchhHH----------------HHHHHHHHHHhCcCHHHHHHHHHHHHhHHHH---HHHHHHHHHHH
Confidence 776531 111 110000 0111222445554444443333332 22111 11122344456
Q ss_pred HcCCCCchhhHHHhHHH-HHHHHHHHHhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcchhhHHHHH
Q 047115 325 TIKVRKSTSLLMSAVVP-DGIGTVSTILPMILADKLGRTVLFLLGGIQILVSQVMIRSIMAAQLGDHGGFNIGYAYLILF 403 (522)
Q Consensus 325 ~~g~~~~~~~~~~~~~~-~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (522)
+.|++..+.+ ...... .++.+++.++.+++.||+++|+.+..+.....+..+.+..... ..+..+....
T Consensus 239 ~~G~~~~~~g-~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~---------~~~~~~~~~~ 308 (402)
T PRK11902 239 GAGFSAGEVG-IVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAV---------TPKHLWTMAL 308 (402)
T ss_pred hcCCCHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh---------cCCcHHHHHH
Confidence 6899988888 665444 4568899999999999999998877666555544433322211 1111222222
Q ss_pred HHH----HHHHhhhccccccccccccccCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHH
Q 047115 404 LIC----VYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLVAQTFLAMLCHFKAGVFFCFGGWVAFMTT 479 (522)
Q Consensus 404 ~~~----~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~ 479 (522)
... ..+...+ ........++.+.+|.+.+ ++.+....++..+++.+.|.+.|+.|+..++..++++.+.++
T Consensus 309 ~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~ 383 (402)
T PRK11902 309 AIGIENLCGGMGTA-AFVALLMALCNRSFSATQY----ALLSALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIALPGL 383 (402)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHhcCCCCcHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHH
Confidence 221 1112222 1223334556677776554 445555566676667789999999997766665555555444
Q ss_pred HHHh
Q 047115 480 FVHF 483 (522)
Q Consensus 480 ~~~~ 483 (522)
....
T Consensus 384 ~~~~ 387 (402)
T PRK11902 384 ALLW 387 (402)
T ss_pred HHHH
Confidence 4433
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.2e-22 Score=206.18 Aligned_cols=354 Identities=10% Similarity=0.011 Sum_probs=228.9
Q ss_pred HhhhhhcchhhccccccHHHHHHhhhhhhhcccCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccc
Q 047115 16 GLIFGYDIGVSGGVTLMEPFLKKCFLEVYKKMKEDPKISNYGKFDSQLLAAFTSSLYIAGLIAFLFASKVTRAFGRKASI 95 (522)
Q Consensus 16 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l 95 (522)
.+......++..+.. |.+.+++ +.|..+.|++.+++.++..++++++|+++||+|||+..
T Consensus 13 ~~~~~~~~g~~~p~l--~~~l~~~------------------g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~ 72 (382)
T PRK11128 13 YFGYFFAYGVFLPFW--SVWLKGQ------------------GYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPA 72 (382)
T ss_pred HHHHHHHHHHHhhhH--HHHHHhc------------------CCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHH
Confidence 334444445655554 6677665 67999999999999999999999999999999995322
Q ss_pred ccccccCcccchhhhhhhhhhhhhhhhcccccccchhhhhHHHHHHHhhhhhhHHHHHHHHHHHhhhhhhhccccccccc
Q 047115 96 LPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCCYSNHCSIGGAAFNIYMLILGCVLLGVGIGFTSQSIQRFNQF 175 (522)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~ 175 (522)
. + .+ .++.++. .......+++++.+++.|++.|++.+...+...++
T Consensus 73 ~-----------------------~-----~~-~~~~~~~--~~~~~~~~~~~~~l~i~~~l~g~~~~~~~~~~~a~--- 118 (382)
T PRK11128 73 L-----------------------R-----LL-ALLTLLF--AVAFWFGAHSFWLLFVAIGLFNLFFSPLVPLTDAL--- 118 (382)
T ss_pred H-----------------------H-----HH-HHHHHHH--HHHHHHhcccHHHHHHHHHHHHHHHcccccHHHHH---
Confidence 1 0 00 0222211 22333446889999999999999988888877776
Q ss_pred cccccccccccCCcchhHHHHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHhhHHHHHHHHHHhcccCCChHHHHHh
Q 047115 176 AYMILLSSNFETTRLSHIDFLLQISICYLILSANLLNYGTQKIKGSWGWRISLAMAAVPASILTIGSLFLPETPNSIIQR 255 (522)
Q Consensus 176 ~~~~~i~~~~~~~~~g~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~gwr~~f~i~~~~~~~~~~~~~~lpesp~~~~~~ 255 (522)
..+ + .+++++..+......++|..+||++++.+.+. +|||..|++.++..++..+...+.||.++ +
T Consensus 119 -----~~~-~-~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~---~g~~~~f~~~~~~~~~~~~~~~~~~~~~~----~ 184 (382)
T PRK11128 119 -----ANT-W-QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSW---FGEQAILWILTAGVASMLLGQLLRPTIMP----Q 184 (382)
T ss_pred -----HHH-H-HhhccCCcchHHHHHHHHHHHHHHHHHHHHHH---cChhHHHHHHHHHHHHHHHHHHccCCCCC----c
Confidence 777 5 33347888888888899999999999998754 38999998776654444444444555321 1
Q ss_pred CCCHHHHHHHHHHHcCCcchHHHHHHHHHHHHhhccccchhHHHHHHHHHHhhhccchhhHhcHHHHHHHcCCCCchhhH
Q 047115 256 NKDHQKAEEILQIVRNTTDVKAELDDIIRASSKIIHRIYRPQLVMAILIPFQQVTRVNVISFNAPVLFMTIKVRKSTSLL 335 (522)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 335 (522)
++ +++. .++...+ .+++++++..+......++. .........+.|.+.++.|.+..+.+
T Consensus 185 ~~-~~~~---------~~~~~~~-------~~~i~~~~~~~~~~~~~~l~---~~~~~~~~~~~~~~~~~~g~s~~~~g- 243 (382)
T PRK11128 185 GE-SRQQ---------ESAGWPA-------WKALLKEPTVWRFLLCVSLL---QGSHAAYYGFSAIYWQAAGYSASTIG- 243 (382)
T ss_pred cc-cccc---------cccccch-------HHHHHcChhHHHHHHHHHHH---HHHhHhHHHHHHHHHHHCCCCHhHHH-
Confidence 11 1000 0000001 11334433233222222222 12223344566777788899988888
Q ss_pred HHhHHHHHHHHHHHHhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcchhhHHHHHHHHHHHHhhhcc
Q 047115 336 MSAVVPDGIGTVSTILPMILADKLGRTVLFLLGGIQILVSQVMIRSIMAAQLGDHGGFNIGYAYLILFLICVYKAGFAFS 415 (522)
Q Consensus 336 ~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (522)
.......+..++..++.+++.||+++|+.+..+.....++.+.+... +..+...+..++.+.+++..
T Consensus 244 ~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~l~g~~~~~~ 310 (382)
T PRK11128 244 YLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGST-------------TALPWLIVIQILHCGTFTVC 310 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhh-------------hhHHHHHHHHHHHHHHHHHH
Confidence 77778888899999999999999999999888877777665544332 22334444444444544443
Q ss_pred ccccccccccccCchhhhhHHHHHHHHH-HHHHHHHHHHHHHHHHHhccchhhHHHHHH
Q 047115 416 RGPLGWLVPSEIFPLEIRSAGQSITVAV-DLLFTFLVAQTFLAMLCHFKAGVFFCFGGW 473 (522)
Q Consensus 416 ~~~~~~~~~~e~~p~~~r~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 473 (522)
.. ....+..+. +++++++.+++.+.. ..++..++|.+.|.+.|+.+...++..+++
T Consensus 311 ~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~~~~~~~~~~ 367 (382)
T PRK11128 311 HL-AAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGAGVFWVMALV 367 (382)
T ss_pred HH-HHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 23 233444555 566678888887644 456778999999999999887555544443
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.1e-22 Score=208.95 Aligned_cols=349 Identities=12% Similarity=0.028 Sum_probs=203.8
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhhhhHH
Q 047115 58 KFDSQLLAAFTSSLYIAGLIAFLFASKVTRAFGRKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCCYSN 137 (522)
Q Consensus 58 ~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 137 (522)
|++..+.|++.+++.++..++++++|+++||+|||++++ ++..+.++
T Consensus 42 g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~---------------------------------~~~~~~~~ 88 (420)
T PRK09528 42 GLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLL---------------------------------WIISGLLV 88 (420)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHH---------------------------------HHHHHHHH
Confidence 789999999999999999999999999999999999998 65555444
Q ss_pred HHHHHh---hhhhhH-HHHHHHHHHHhhhhhhhcccccccccccccccccccc---CCcchhHHHHHHHHHHHHHHHHHH
Q 047115 138 HCSIGG---AAFNIY-MLILGCVLLGVGIGFTSQSIQRFNQFAYMILLSSNFE---TTRLSHIDFLLQISICYLILSANL 210 (522)
Q Consensus 138 ~~~~~~---~a~~~~-~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~i~~~~~---~~~~g~~~~~~~~~~~lG~~~~~~ 210 (522)
+..... .++... ....+.++.++..+......... +.+ +. ++++++..+......++|..+++.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~-~~~~~~~~~g~~~g~~~~~~~~g~~i~~~ 159 (420)
T PRK09528 89 LFGPFFIYVFAPLLQYNILLGAIVGGIYLGFGFLAGAGA--------IEA-YIERVSRRSGFEYGRARMWGSLGWALCAF 159 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhh--------hhh-HHHHHHhhccccchhhHHhhhHHHHHHHH
Confidence 332211 111110 11122223333333333222222 333 22 222377888888889999999999
Q ss_pred HHhhhhccCCCCchHHHHHhhHHHHHHHHHHhccc-CCChHHHHHhCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHHhh
Q 047115 211 LNYGTQKIKGSWGWRISLAMAAVPASILTIGSLFL-PETPNSIIQRNKDHQKAEEILQIVRNTTDVKAELDDIIRASSKI 289 (522)
Q Consensus 211 ~~~~l~~~~~~~gwr~~f~i~~~~~~~~~~~~~~l-pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 289 (522)
+++.+.+ .+||+.|++.++..++..+..++. ||.++. +++ .++.+ +++.+.+.++. .+.
T Consensus 160 ~~g~l~~----~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~--------~~~~~~~~~~~----~~~ 219 (420)
T PRK09528 160 IAGILFN----INPQINFWLGSGSALILLVLLFFAKPDAPST---AKV-ANALG--------ANASAVSLKDA----LAL 219 (420)
T ss_pred HHHHHHh----cCchHhHHHHHHHHHHHHHHHhcccccccch---hhh-ccchh--------cccccccHHHH----HHH
Confidence 9888764 269999998877766655555444 333221 000 00000 00000111111 133
Q ss_pred ccccchhHHHHHHHHHHhhhccchhhHhcHHHHHH----HcCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhhccchHHH
Q 047115 290 IHRIYRPQLVMAILIPFQQVTRVNVISFNAPVLFM----TIKVRKSTSLLMSAVVPDGIGTVSTILPMILADKLGRTVLF 365 (522)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~ 365 (522)
++++..+...+..+... ........+.|.++. +.+.+....+ ...+...+...++.++.+++.||+++|+.+
T Consensus 220 l~~~~~~~l~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~ 295 (420)
T PRK09528 220 LKLPKFWFLVLYVIGVA---CFYDVFDQQFPNFFASFFATPEQGTRVFG-YLNSFQVFLEALIMFFAPFIINRIGAKNAL 295 (420)
T ss_pred ccCCCeEeehHHHHHHH---HHHHHHHHHHHHHHHHHHhccCcchHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCcchhh
Confidence 43333222222211111 111112223444443 2355555666 777777888899999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCCCCcchhhHHHHHHHHHHHHhhhccccccccccccccCchhhhhHHHHH-HHHHH
Q 047115 366 LLGGIQILVSQVMIRSIMAAQLGDHGGFNIGYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSI-TVAVD 444 (522)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~-~~~~~ 444 (522)
..+..+..+...++... .+.+.......+.+.+.+.. .+....+..|.+|++.|++..+. .++..
T Consensus 296 ~~~~~l~~~~~~l~~~~-------------~~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 361 (420)
T PRK09528 296 LLAGTIMAVRIIGSGFA-------------TGPLEVSILKLLHAFEVPFL-LVGVFKYITLNFDVRLSATIYLVGFQFAK 361 (420)
T ss_pred HHHHHHHHHHHHHHHhc-------------ccHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCccceeeeeeehHHHHH
Confidence 88777776665555432 11223333333333333222 12233566788899999887765 56778
Q ss_pred HHHHHHHHHHHHHHHHhccchh-hHHHHHHHHHHHHHHHhhcc
Q 047115 445 LLFTFLVAQTFLAMLCHFKAGV-FFCFGGWVAFMTTFVHFFLP 486 (522)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~i~~~~~~~~~~ 486 (522)
.++..+++.+.|.+.|..|+.. +...+.+.++..++.+...+
T Consensus 362 ~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~~~~ 404 (420)
T PRK09528 362 QLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVFTLS 404 (420)
T ss_pred HHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHhc
Confidence 8999999999999999988654 44455555555545454444
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.1e-22 Score=203.19 Aligned_cols=320 Identities=10% Similarity=0.037 Sum_probs=209.6
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHhhhhh-----cccccc-ccccccCcccchhhhhhhhhhhhhhhhcccccccch
Q 047115 58 KFDSQLLAAFTSSLYIAGLIAFLFASKVTRAF-----GRKASI-LPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCC 131 (522)
Q Consensus 58 ~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~-----Grk~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (522)
|+|.++.++..+. .+...+ .+++|+++||+ ||||.+ + .+
T Consensus 19 g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~---------------------------------~~ 63 (356)
T TIGR00901 19 NVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLV---------------------------------LT 63 (356)
T ss_pred CCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHH---------------------------------HH
Confidence 7899999999755 555555 99999999998 899974 5 66
Q ss_pred hhhhHHHHHHHhhh---hhhHHHHHHHHHHHhhhhhhhccccccccccccccccccccCCcc-hhHHHHHHHHHHHHHHH
Q 047115 132 SCCYSNHCSIGGAA---FNIYMLILGCVLLGVGIGFTSQSIQRFNQFAYMILLSSNFETTRL-SHIDFLLQISICYLILS 207 (522)
Q Consensus 132 ~~l~~~~~~~~~~a---~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~-g~~~~~~~~~~~lG~~~ 207 (522)
.++.++.....++. .+.+.+....++.+++.+...+...++ +.| +.|+++ +++.++...+..+|.++
T Consensus 64 ~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~a~--------~~~-~~~~~~r~~~~~~~~~~~~~G~~~ 134 (356)
T TIGR00901 64 QVLLLSLLLILSFLVPSTDLPLLAGLAFLIAFFSATQDIALDAW--------RLE-ILSDEELGYGSTIYIVGYRAGMLL 134 (356)
T ss_pred HHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHH--------HHH-hCCHhhhchHHHHHHHHHHHHHHH
Confidence 77777776666666 456677778888888888888888888 999 888888 99999999999999999
Q ss_pred HHHHHhhhhccCC-----CCchHHHHHhhHHHHHHHHHHhcc-cCCChHHHHHhCCCHHHHHHHHHHHcCCcchHHHHHH
Q 047115 208 ANLLNYGTQKIKG-----SWGWRISLAMAAVPASILTIGSLF-LPETPNSIIQRNKDHQKAEEILQIVRNTTDVKAELDD 281 (522)
Q Consensus 208 ~~~~~~~l~~~~~-----~~gwr~~f~i~~~~~~~~~~~~~~-lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (522)
++.++..+....+ .++||..|++.++..++..+..++ .||+++. +++ .++.+ ++
T Consensus 135 ~~~l~~~l~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~~~~~~~e~~~~---~~~-~~~~~----------------~~ 194 (356)
T TIGR00901 135 SGSLALVLASPEFANTGLITLWGYIFFWTALLILPGLLVTLFLAKEPQED---ASV-PKPLT----------------QA 194 (356)
T ss_pred HHHHHHHHhhhcccccccccccHHHHHHHHHHHHHHHHHHHHhccCCCcc---ccc-chhHH----------------HH
Confidence 9999887765442 234999999988876665555443 5664321 001 00000 00
Q ss_pred HHHHHHhhccccchhHHHHHHHHHHhhhccchhhHhcHHHHHHHcCCCCchhhHHHhHHHH-HHHHHHHHhHHHHhhhcc
Q 047115 282 IIRASSKIIHRIYRPQLVMAILIPFQQVTRVNVISFNAPVLFMTIKVRKSTSLLMSAVVPD-GIGTVSTILPMILADKLG 360 (522)
Q Consensus 282 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~g~l~dr~g 360 (522)
.++..+++++++..++.+......+...........+.|.++++.|++..+.+ ......+ +..+++.++++++.||+|
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~g-~~~~~~~~~~~~~g~~~~g~l~~r~g 273 (356)
T TIGR00901 195 VLKPIREFFQRKNMIQALLLLLLIVLYKLGDSAATVLTTLFLLDMGFSKEEIA-LVAKINGLLGAILGGLIGGIIMQPLN 273 (356)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH-HHhHHHHHHHHHHHHHHHHHHHhhhh
Confidence 11112233443332233333333332333344556777888877899998887 5555444 677899999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcchhhHHHHHHHHHHHHhhhccccccccccccccCchhhhhHHHHHH
Q 047115 361 RTVLFLLGGIQILVSQVMIRSIMAAQLGDHGGFNIGYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSIT 440 (522)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~ 440 (522)
+|+.+..+.++..+...++...... .++.+.+....+......++...+.+.. .+....+..|.+|+++||+.+|+.
T Consensus 274 ~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~p~~~~g~~~g~~ 350 (356)
T TIGR00901 274 ILYALLLFGIVQALTNAGFVWLASN--GHHDGITFPHLLMLFLTITLEAVTGGLG-TVAFVAFLSKLSNPKFGATQMALL 350 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc--CcccccccchHHHHHHHHHHHHHHhHHH-HHHHHHHHHHhcCCCccHHHHHHH
Confidence 9998887777666655444332110 0000000012233333333333333333 334457778999999999999998
Q ss_pred HHHHH
Q 047115 441 VAVDL 445 (522)
Q Consensus 441 ~~~~~ 445 (522)
+...+
T Consensus 351 ~~~~~ 355 (356)
T TIGR00901 351 SSLSA 355 (356)
T ss_pred HHHHh
Confidence 87654
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.1e-21 Score=229.88 Aligned_cols=325 Identities=11% Similarity=-0.042 Sum_probs=219.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhhhhHHHH
Q 047115 60 DSQLLAAFTSSLYIAGLIAFLFASKVTRAFGRKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCCYSNHC 139 (522)
Q Consensus 60 ~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 139 (522)
+....+++.+++.+++.++++++|+++||+|||++++ .+.++..+..
T Consensus 45 ~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~---------------------------------~~~~~~~~~~ 91 (1146)
T PRK08633 45 QVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIR---------------------------------IVKLFEVGLT 91 (1146)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHH---------------------------------HHHHHHHHHH
Confidence 4556899999999999999999999999999999999 7776655555
Q ss_pred HHH---hhhhhhHHHHHHHHHHHhhhhhhhccccccccccccccccccccCCcc-hhHHHHHHHHHHHHHHHHHHHHhhh
Q 047115 140 SIG---GAAFNIYMLILGCVLLGVGIGFTSQSIQRFNQFAYMILLSSNFETTRL-SHIDFLLQISICYLILSANLLNYGT 215 (522)
Q Consensus 140 ~~~---~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~-g~~~~~~~~~~~lG~~~~~~~~~~l 215 (522)
++. ..+++++.++++|+++|++.+...+...++ +.| ++++++ ++++++.+.+..+|.++|+++++.+
T Consensus 92 ~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~--------i~~-~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l 162 (1146)
T PRK08633 92 LLIVLAYYLGWFWLAFAVTFLLGAQSAIYSPAKYGI--------IPE-LVGKENLSRANGLLEAFTIVAILAGTALFSFL 162 (1146)
T ss_pred HHHHHHHHHccHHHHHHHHHHHHHHHHhhchHHHhh--------hHH-hcCcccchhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 443 345789999999999999999999999999 999 888888 9999999999999999999999888
Q ss_pred hccCC------CCchHHHHHhh-HHHHHHHHHHhcccCCChHHHHHhCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHHh
Q 047115 216 QKIKG------SWGWRISLAMA-AVPASILTIGSLFLPETPNSIIQRNKDHQKAEEILQIVRNTTDVKAELDDIIRASSK 288 (522)
Q Consensus 216 ~~~~~------~~gwr~~f~i~-~~~~~~~~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (522)
..... ..+|++.+.+. ....++.++..+.+||+|.....+.+ ++.. ...++..+..+.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-------------~~~~~~~~~~~~ 227 (1146)
T PRK08633 163 FESVNGNTPSEILGRIAPAGLVLLAVAVLGLIFAYRLPKVPAAAPEVFD--KKKY-------------LFPKLLWRNLKL 227 (1146)
T ss_pred HHhhccccccccccchHHHHHHHHHHHHHHHHHHhcCcCCCCCCccccc--cccc-------------ccHHHHHHHHHH
Confidence 75410 11344444333 33344444555667887642111000 0000 000111112223
Q ss_pred hccccchhHHHHHHHHHHhhhccchhhHhcHHHHH-HHcCCCCc-hhhHHHhHHHHHHHHHHHHhHHHHhhhccchHHHH
Q 047115 289 IIHRIYRPQLVMAILIPFQQVTRVNVISFNAPVLF-MTIKVRKS-TSLLMSAVVPDGIGTVSTILPMILADKLGRTVLFL 366 (522)
Q Consensus 289 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~ 366 (522)
+++++..+...+...+. .........+.|.++ +..|++.. ..+ ++.+...++.+++.++.+++.||+++++.+.
T Consensus 228 l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~g~s~~~~~g-~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~ 303 (1146)
T PRK08633 228 LRSDRVLWLAIIGLSYF---WFISQLAQANFPAYAKEVLGLDNTFQVQ-YLLAASAIGIGIGSLLAGRLSGRHIELGLVP 303 (1146)
T ss_pred HhcCcHHHHHHHHHHHH---HHHHHHHHHhhHHHHHHHhCCCcHHHHH-HHHHHHHHHHHHHHHHHHHHhCCceEccchh
Confidence 44433333222222222 122233445566666 45789888 777 8888889999999999999999999988887
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCCCcchhhHHHHHHHHHHHHhhhccccccccccccccCchhhhhHHHHHHHHHHHH
Q 047115 367 LGGIQILVSQVMIRSIMAAQLGDHGGFNIGYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLL 446 (522)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~ 446 (522)
++.++..++.+++... ...+..++..++++.+.+.... ...++..+..|++.||+++|+.+.+..+
T Consensus 304 ~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~p~~~rg~~~~~~~~~~~l 369 (1146)
T PRK08633 304 LGALGLALSLFLLPTA-------------PSLASVLVLFFLFGFSAGLFIV-PLNALIQFRAPEKELGKVLAANNFLQNV 369 (1146)
T ss_pred HHHHHHHHHHHHHHHh-------------hhHHHHHHHHHHHHHHHHHhhH-HHHHHHhhcCCccchhhhhHHHHHHHHH
Confidence 7776666665554432 1222333333444444433333 3346667899999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 047115 447 FTFLVAQTFLAML 459 (522)
Q Consensus 447 ~~~~~~~~~~~~~ 459 (522)
+..+++.+.+.+.
T Consensus 370 g~~~~~~~~~~l~ 382 (1146)
T PRK08633 370 GMLLFLALTTLFS 382 (1146)
T ss_pred HHHHHHHHHHHHH
Confidence 8877766655443
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.4e-22 Score=232.01 Aligned_cols=337 Identities=11% Similarity=0.018 Sum_probs=222.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhhhhHHHHH
Q 047115 61 SQLLAAFTSSLYIAGLIAFLFASKVTRAFGRKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCCYSNHCS 140 (522)
Q Consensus 61 ~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 140 (522)
....++..+++.++++++++++|+++||+|||+++. . ...+.+..+...+
T Consensus 51 ~~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~----------------------------~--~~~~~~~~~~~~~ 100 (1140)
T PRK06814 51 NALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAK----------------------------I--LKFAEIGIAALAI 100 (1140)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHH----------------------------H--HHHHHHHHHHHHH
Confidence 345788899999999999999999999999999864 0 0022223333333
Q ss_pred HHhhhhhhHHHHHHHHHHHhhhhhhhccccccccccccccccccccCCcc-hhHHHHHHHHHHHHHHHHHHHHhhhhccC
Q 047115 141 IGGAAFNIYMLILGCVLLGVGIGFTSQSIQRFNQFAYMILLSSNFETTRL-SHIDFLLQISICYLILSANLLNYGTQKIK 219 (522)
Q Consensus 141 ~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~-g~~~~~~~~~~~lG~~~~~~~~~~l~~~~ 219 (522)
.+...++++.++++|+++|++.+...|...++ +.+ ++++++ ++++++.+++..+|.++|+++++.+....
T Consensus 101 ~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a~--------l~~-~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~ 171 (1140)
T PRK06814 101 YGFHLNSVPLLFAALFLMGIHSALFGPIKYSI--------LPD-HLNKDELLGANALVEAGTFIAILLGTIIGGLATISG 171 (1140)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHhhchHHHHh--------hHh-hcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33445899999999999999999999999999 999 888888 99999999999999999999999998654
Q ss_pred CCCchHHHHHhhHHHHHHHHHHhcccCCChHHHHHhCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHHhhccccchhHHH
Q 047115 220 GSWGWRISLAMAAVPASILTIGSLFLPETPNSIIQRNKDHQKAEEILQIVRNTTDVKAELDDIIRASSKIIHRIYRPQLV 299 (522)
Q Consensus 220 ~~~gwr~~f~i~~~~~~~~~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 299 (522)
+|++.|+..++..++.++..+++|+++.. +++. ..+ .+ ..++..+..+.+.+++..+...
T Consensus 172 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~-~~-------------~~~~~~~~~~~~~~~~~~~~~~ 231 (1140)
T PRK06814 172 ---NFVILVALLMGIAVLGWLASLFIPKTGNA--APDL-KID-RN-------------IIRSTITLLKYAKADKRIWLAI 231 (1140)
T ss_pred ---ccHHHHHHHHHHHHHHHHHHhhCCCCCCC--CCCC-eec-cc-------------hHHHHHHHHHHHhcCchHHHHH
Confidence 79999966666666666666777776421 0111 000 00 0001111111333333222222
Q ss_pred HHHHHHHhhhccchhhHhcHHHHHHH-cCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhhccchHHHHHHHHHHHHHHHH
Q 047115 300 MAILIPFQQVTRVNVISFNAPVLFMT-IKVRKSTSLLMSAVVPDGIGTVSTILPMILADKLGRTVLFLLGGIQILVSQVM 378 (522)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~ 378 (522)
+.. +........+..+.|.++++ +|.+....+ ++.+...++.+++.++.+++.|+..+++.+..+.++..+..+.
T Consensus 232 ~~~---~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g-~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~ 307 (1140)
T PRK06814 232 LGI---SWFWLVGAVVLSQLPLLAKETLGGDENVAT-LFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLD 307 (1140)
T ss_pred HHH---HHHHHHHHHHHHHhHHHHHHHcCCchHHHH-HHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHH
Confidence 222 22222233455677888754 688988888 8899999999999999999998877766555555444444333
Q ss_pred HHHHHHHhhCCCC-------CCcchhhHHHHHHHHHHHHhhhccccccccccccccCchhhhhHHHHHHHHHHHHHHHHH
Q 047115 379 IRSIMAAQLGDHG-------GFNIGYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLV 451 (522)
Q Consensus 379 ~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~ 451 (522)
+.+.......... -......+...+..++++.+.+....+ ..++..+..|++.||+++|+.+++..++..++
T Consensus 308 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig 386 (1140)
T PRK06814 308 LAFASSSVPAEPAQLKSILVFLSKRHGWRILIDLFGLAAAGGLYIVP-LFAALQAWANPAHRARVIAANNVLNAAFMVAG 386 (1140)
T ss_pred HHhcccccccccccccchhhhhcccccHHHHHHHHHHHHHHHHhHHH-HHHHHHhhCCcccceeeeHHHHHHHHHHHHHH
Confidence 3221000000000 000022233333344444444333333 44666899999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 047115 452 AQTFLAMLCH 461 (522)
Q Consensus 452 ~~~~~~~~~~ 461 (522)
+.+.+.+.+.
T Consensus 387 ~~~~g~l~~~ 396 (1140)
T PRK06814 387 TIILALLQAL 396 (1140)
T ss_pred HHHHHHHHHh
Confidence 9999888754
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.2e-21 Score=199.72 Aligned_cols=342 Identities=11% Similarity=0.038 Sum_probs=210.5
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhhhhHH
Q 047115 58 KFDSQLLAAFTSSLYIAGLIAFLFASKVTRAFGRKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCCYSN 137 (522)
Q Consensus 58 ~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 137 (522)
|++..+.+++.+++.++..+++++.|+++||+|||+.++ .+....++
T Consensus 34 g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~---------------------------------~~~~~~~~ 80 (396)
T TIGR00882 34 GLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLL---------------------------------WIISGLLV 80 (396)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHH---------------------------------HHHHHHHH
Confidence 779999999999999999999999999999999999998 66555544
Q ss_pred HHHHH---hhh-----hhhHHHHHHHHHHHhhhhhhhccccccccccccccccccccCCcchhHHHHHHHHHHHHHHHHH
Q 047115 138 HCSIG---GAA-----FNIYMLILGCVLLGVGIGFTSQSIQRFNQFAYMILLSSNFETTRLSHIDFLLQISICYLILSAN 209 (522)
Q Consensus 138 ~~~~~---~~a-----~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~lG~~~~~ 209 (522)
+.... .++ +....+++.|++.|++.+...+....+ ..+ ..+ ++++..+......++|.++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--------~~~-~~~-~~~~~~g~~~~~~~~g~~~g~ 150 (396)
T TIGR00882 81 LFAPFFIYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAY--------IEK-VSR-NSNFEYGKARMFGCVGWALCA 150 (396)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHH--------HHH-hhh-hcccccchhhhhcccHHHHHH
Confidence 33322 111 223445667888888888777777666 666 432 225566777788889999999
Q ss_pred HHHhhhhccCCCCchHHHHHhhHHHHHHHHHHhcc-cCCChHHHHHhCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHHh
Q 047115 210 LLNYGTQKIKGSWGWRISLAMAAVPASILTIGSLF-LPETPNSIIQRNKDHQKAEEILQIVRNTTDVKAELDDIIRASSK 288 (522)
Q Consensus 210 ~~~~~l~~~~~~~gwr~~f~i~~~~~~~~~~~~~~-lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (522)
.+++.+.+ .+||.+|++.++..++..+..++ .||+|+. +++ ++.. + .++.+.+.++. .+
T Consensus 151 ~~~g~l~~----~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~------~-~~~~~~~~~~~----~~ 210 (396)
T TIGR00882 151 SIAGILFS----IDPQIVFWLGSGFALILMLLLMFAKPKAPSS---ATV--ANAL------G-ANASAFSLKLA----LE 210 (396)
T ss_pred HHHhhhhc----cCchHHHHHHHHHHHHHHHHHHHhCCCCchh---hhh--hccc------c-cccCCCCHHHH----HH
Confidence 99887753 37999999877766655444433 4544321 000 0000 0 00000011111 14
Q ss_pred hccccchhHHHHHHHHHHhhhccchhhHhcHHHHHHHc----CCCCchhhHHHhHHHHHHHHHHHHhHHHHhhhccchHH
Q 047115 289 IIHRIYRPQLVMAILIPFQQVTRVNVISFNAPVLFMTI----KVRKSTSLLMSAVVPDGIGTVSTILPMILADKLGRTVL 364 (522)
Q Consensus 289 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~ 364 (522)
+++++..+...+. .+.....+.....+.+.++++. +.+....+ .......+...++.+..+++.||+++|+.
T Consensus 211 ~l~~~~~~~~~l~---~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g-~~~~~~~i~~~~~~~~~g~l~~r~g~~~~ 286 (396)
T TIGR00882 211 LFRQRKFWMFVLY---VVGVACVYDVFDQQFANFFTSFFATPQQGTRVFG-YVTTMGELLNALIMFCAPLIINRIGAKNA 286 (396)
T ss_pred HHcCCcHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhccccccchHHHH-HHHHHHHHHHHHHHHHHHHHHHHhccchh
Confidence 4444332222221 1111122222333445555432 44445556 67777888888899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCCCCcchhhHHHHHHHHHHHHhhhccccccccccccccCchhhhhHHHHH-HHHH
Q 047115 365 FLLGGIQILVSQVMIRSIMAAQLGDHGGFNIGYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSI-TVAV 443 (522)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~-~~~~ 443 (522)
+.++..+..+...+.... .+.+......++.+.+..... .....+..+..|++.++++.+. .+..
T Consensus 287 l~~~~~l~~l~~~~~~~~-------------~~~~~~~~~~~l~g~~~~~~~-~~~~~~~~~~~~~~~~at~~~~~~~~~ 352 (396)
T TIGR00882 287 LLIAGTIMSVRIIGSSFA-------------TTALEVVILKMLHAFEVPFLL-VGCFKYITSQFDVRLSATIYLIGFQFA 352 (396)
T ss_pred HHHHHHHHHHHHHHHHhc-------------CChHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCcceEEEeehHHHHHH
Confidence 888777666655443321 122233333333333322211 1222344566788888887766 5678
Q ss_pred HHHHHHHHHHHHHHHHHhccc-hhhHHHHHHHHHHHHH
Q 047115 444 DLLFTFLVAQTFLAMLCHFKA-GVFFCFGGWVAFMTTF 480 (522)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~i~~~~ 480 (522)
..+++.+++.+.|.+.+..|+ ..+.+.+.+.++.+++
T Consensus 353 ~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~ 390 (396)
T TIGR00882 353 KQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLI 390 (396)
T ss_pred HHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 899999999999999998885 4455555555444444
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.4e-21 Score=212.63 Aligned_cols=298 Identities=12% Similarity=0.100 Sum_probs=205.2
Q ss_pred HHHHHhhhhhcchhhccccccHHHHHHhhhhhhhcccCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 047115 12 AATSGLIFGYDIGVSGGVTLMEPFLKKCFLEVYKKMKEDPKISNYGKFDSQLLAAFTSSLYIAGLIAFLFASKVTRAFGR 91 (522)
Q Consensus 12 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Gr 91 (522)
..+..+..+.+.+..+.+. +.+.++| ++++++.|++.+.+.++++++.++.|++.||+||
T Consensus 38 ~~~~~~~~~~~~g~~~~~l--~~iek~F------------------~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r 97 (633)
T TIGR00805 38 LTCAQLQGLLYNGLVNSSL--TTIERRF------------------KLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHR 97 (633)
T ss_pred HHHHHHHHHHHHHHHHhhc--hhhhhhh------------------CCCCCcceeeeehhhHHHHHHHHHHHHhhcccCc
Confidence 3445566666666666655 4554444 7899999999999999999999999999999999
Q ss_pred ccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhhhhHHHHHHHhhhh-------------------------
Q 047115 92 KASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCCYSNHCSIGGAAF------------------------- 146 (522)
Q Consensus 92 k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~------------------------- 146 (522)
|+.+. ++.+++++++++.++.+
T Consensus 98 ~~~i~---------------------------------~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~ 144 (633)
T TIGR00805 98 PIVIG---------------------------------IGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFL 144 (633)
T ss_pred ceEEE---------------------------------ecHHHHHHHHHHHhChHHhcCCcccccccccccccccccccc
Confidence 99999 99999999999987753
Q ss_pred --------------------------hhHHHHHHHHHHHhhhhhhhccccccccccccccccccccCCcc-hhHHHHHHH
Q 047115 147 --------------------------NIYMLILGCVLLGVGIGFTSQSIQRFNQFAYMILLSSNFETTRL-SHIDFLLQI 199 (522)
Q Consensus 147 --------------------------~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~-g~~~~~~~~ 199 (522)
.+..++++|+++|+|.+..++...++ +.| ++|+++ +++.++++.
T Consensus 145 c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~--------i~d-~~~~~~~~~~~~i~~~ 215 (633)
T TIGR00805 145 CMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISY--------IDD-FAKSKNSPLYIGILES 215 (633)
T ss_pred ccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchh--------hhc-cCCccccHHHHHHHHH
Confidence 24567889999999999999999999 999 888888 999999999
Q ss_pred HHHHHHHHHHHHHhhhhccCCC-----------------C--chHHHHHhhHHHHHHHHHHhcccCCC-hHHHHHhCCCH
Q 047115 200 SICYLILSANLLNYGTQKIKGS-----------------W--GWRISLAMAAVPASILTIGSLFLPET-PNSIIQRNKDH 259 (522)
Q Consensus 200 ~~~lG~~~~~~~~~~l~~~~~~-----------------~--gwr~~f~i~~~~~~~~~~~~~~lpes-p~~~~~~~~~~ 259 (522)
+..+|.++|+++++.+.+.... | +||..|++.+++.++..+.++++|++ |+.. .+.+ .
T Consensus 216 ~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~~~p~~lp~~~-~~~~-~ 293 (633)
T TIGR00805 216 IAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIPFFFFPKALPKEG-KRVN-V 293 (633)
T ss_pred HHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhCccccCCcc-cccc-h
Confidence 9999999999999887753211 1 37778888777666655555566654 2110 0000 0
Q ss_pred HHHHH-HHHHHcCC--cchHHHHHHHHHHHHhhccccchhHHHHHHHHH-HhhhccchhhHhcHHHHHH-HcCCCCchhh
Q 047115 260 QKAEE-ILQIVRNT--TDVKAELDDIIRASSKIIHRIYRPQLVMAILIP-FQQVTRVNVISFNAPVLFM-TIKVRKSTSL 334 (522)
Q Consensus 260 ~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~ 334 (522)
+..++ ...+...+ .+.....++..+..+++++++ .++...+. +........+..|.|.+++ .+|++..+++
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~n~----~f~~~~l~~~~~~~~~~~~~~~lP~yl~~~~g~s~~~ag 369 (633)
T TIGR00805 294 DVHETEKLEKSEDKSRKKNSDITKDFPKIIKRLLCNP----IYMLVILAQVIDSLAFNGYITFLPKYLENQYGISSAEAN 369 (633)
T ss_pred hhhhhhcccccccccchhhhhhHHHHHHHHHHHHcCc----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHH
Confidence 00000 00000000 000011222223333455433 22222223 4445555667789999986 5799999988
Q ss_pred HHHhHHHHH-HHHHHHHhHHHHhhhcc--chHHHHHHHHHHHHHHHH
Q 047115 335 LMSAVVPDG-IGTVSTILPMILADKLG--RTVLFLLGGIQILVSQVM 378 (522)
Q Consensus 335 ~~~~~~~~~-~~~~~~~~~g~l~dr~g--~~~~~~~~~~~~~~~~~~ 378 (522)
++.....+ +.+++.+++|+++||++ .|+.+..+.....++.+.
T Consensus 370 -~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~~~~~~~~~~~ 415 (633)
T TIGR00805 370 -FLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYFAICLSTLSYLL 415 (633)
T ss_pred -HHhhhhhhhHHHHHHhhhhheeeeecccHHHHHHHHHHHHHHHHHH
Confidence 66666555 56899999999999998 446666666555555443
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.2e-21 Score=201.95 Aligned_cols=340 Identities=13% Similarity=0.083 Sum_probs=235.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhhhhHHHH
Q 047115 60 DSQLLAAFTSSLYIAGLIAFLFASKVTRAFGRKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCCYSNHC 139 (522)
Q Consensus 60 ~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 139 (522)
|+...+++..+..+...+.++++|.++||+.||++++ .+-++.++..
T Consensus 43 S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili---------------------------------~~~~~~~~~~ 89 (524)
T PF05977_consen 43 SPLMVALVQAASTLPILLLSLFAGALADRFDRRRILI---------------------------------LSQLLRALVA 89 (524)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHH---------------------------------HHHHHHHHHH
Confidence 7889999999999999999999999999999999999 6655554443
Q ss_pred HHHhh-----hhhhHHHHHHHHHHHhhhhhhhccccccccccccccccccccCCcc-hhHHHHHHHHHHHHHHHHHHHHh
Q 047115 140 SIGGA-----AFNIYMLILGCVLLGVGIGFTSQSIQRFNQFAYMILLSSNFETTRL-SHIDFLLQISICYLILSANLLNY 213 (522)
Q Consensus 140 ~~~~~-----a~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~-g~~~~~~~~~~~lG~~~~~~~~~ 213 (522)
+..++ ..+.+.+++.-++.|++.+...|+.+++ +.| ..|+++ ..+.++.+...++..++||.+++
T Consensus 90 ~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~--------ip~-lV~~~~L~~A~al~s~~~niar~iGPalgG 160 (524)
T PF05977_consen 90 LLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAI--------IPE-LVPKEDLPAANALNSISFNIARIIGPALGG 160 (524)
T ss_pred HHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHH--------HHH-hccHhhHHHHHHHHHHHHHHHHhccchHHH
Confidence 33322 2477899999999999999999999999 999 999999 99999999999999999999999
Q ss_pred hhhccCCCCchHHHHHhhHHHHHHHHHHhcccCCChHHHHHhCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHHhhcccc
Q 047115 214 GTQKIKGSWGWRISLAMAAVPASILTIGSLFLPETPNSIIQRNKDHQKAEEILQIVRNTTDVKAELDDIIRASSKIIHRI 293 (522)
Q Consensus 214 ~l~~~~~~~gwr~~f~i~~~~~~~~~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 293 (522)
.+.... |-.+.|.+.++..++.+......+..++ +++. +.++. .+++++..+-+.+++
T Consensus 161 ~Lva~~---G~~~~f~inalsfl~~i~~l~~~~~~~~---~~~~---~~e~~-------------~~~l~~G~ryv~~~~ 218 (524)
T PF05977_consen 161 ILVAFF---GAAAAFLINALSFLISILALLRWKPPPP---PSSL---PRERF-------------FSALREGLRYVRSSP 218 (524)
T ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHHHHHcccccc---cccc---chhhh-------------hhhHHHHHHHHhcch
Confidence 887554 5677888876655554443333332211 0111 01111 111111221222222
Q ss_pred chhHHHHHHHHHHhhhccchhhHhcHHHHHH-HcCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhhccchHHHHHHHHHH
Q 047115 294 YRPQLVMAILIPFQQVTRVNVISFNAPVLFM-TIKVRKSTSLLMSAVVPDGIGTVSTILPMILADKLGRTVLFLLGGIQI 372 (522)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~ 372 (522)
..+..+....+.. .....+...+|.+.+ .+|.+....+ ++.+..+++.++|+++.+++.+|+++++++..+.+..
T Consensus 219 ~l~~~l~~~~~~~---l~~~a~~aLlPl~a~~~l~~~a~~yG-ll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~ 294 (524)
T PF05977_consen 219 PLRSVLLRSFLFN---LFASAVWALLPLFARDVLGGGASGYG-LLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLF 294 (524)
T ss_pred HHHHHHHHHHHHH---HhhhHHHHhhhHHHHHHhCCcHHHHH-HHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHH
Confidence 2222222121221 111223345677764 5688888888 9999999999999999999999999999888887777
Q ss_pred HHHHHHHHHHHHHhhCCCCCCcchhhHHHHHHHHHHHHhhhccccccccccccccCchhhhhHHHHHHHHHHHHHHHHHH
Q 047115 373 LVSQVMIRSIMAAQLGDHGGFNIGYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLVA 452 (522)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~ 452 (522)
+++.+.+.+. .+.+......++.+.+......+ ..+...+..|++.||++.++..++...+..++.
T Consensus 295 a~~~~~lal~-------------~~~~~~~~~l~l~G~~~~~~~~~-~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGs 360 (524)
T PF05977_consen 295 ALALLLLALS-------------PSFWLALIALFLAGAAWIIANSS-LNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGS 360 (524)
T ss_pred HHHHHHHhcc-------------hHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHH
Confidence 7766665553 22334444444444444333332 335557899999999999999999999999999
Q ss_pred HHHHHHHHhccchhhHHHHHHHHHHHHHH
Q 047115 453 QTFLAMLCHFKAGVFFCFGGWVAFMTTFV 481 (522)
Q Consensus 453 ~~~~~~~~~~g~~~~~~~~~~~~i~~~~~ 481 (522)
.+.|.+.++.+....+..++++.+.+.++
T Consensus 361 ll~G~la~~~g~~~al~~a~~~lll~~~~ 389 (524)
T PF05977_consen 361 LLWGFLADHFGVRTALLIAGAALLLSALI 389 (524)
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Confidence 99999999998544444444444433333
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.2e-22 Score=214.03 Aligned_cols=365 Identities=15% Similarity=0.105 Sum_probs=253.5
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhhhhHH
Q 047115 58 KFDSQLLAAFTSSLYIAGLIAFLFASKVTRAFGRKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCCYSN 137 (522)
Q Consensus 58 ~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 137 (522)
+-+..+.+|+.++......+..|+.+.+.||+|.|.+.+ .|.++.++
T Consensus 77 ~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i---------------------------------~G~~v~~~ 123 (509)
T KOG2504|consen 77 GSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMI---------------------------------AGGLVAAL 123 (509)
T ss_pred CCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHH---------------------------------HHHHHHHH
Confidence 557778999999999999999999999999999999999 99999999
Q ss_pred HHHHHhhhhhhHHHHH-HHHHHHhhhhhhhccccccccccccccccccccCCcchhHHHHHHHHHHHHHHHHHHHHhhhh
Q 047115 138 HCSIGGAAFNIYMLIL-GCVLLGVGIGFTSQSIQRFNQFAYMILLSSNFETTRLSHIDFLLQISICYLILSANLLNYGTQ 216 (522)
Q Consensus 138 ~~~~~~~a~~~~~l~~-~r~l~G~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~lG~~~~~~~~~~l~ 216 (522)
|.++.++++++|++++ .-++.|+|.|+.+...... +.. ++++||+.+.|+...+.++|..+-|.+...+.
T Consensus 124 g~~lssF~~~i~~l~lt~gvi~G~G~~~~~~paivi--------v~~-YF~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~ 194 (509)
T KOG2504|consen 124 GLLLSSFATSLWQLYLTFGVIGGLGLGLIYLPAVVI--------LGT-YFEKKRALATGIAVSGTGVGTVVFPPLLKYLL 194 (509)
T ss_pred HHHHHHHHhhHHHHHHHHHHHhhccchhhhcchhhh--------hhh-HhHHHHHHHHhhhhccCCcceeeHHHHHHHHH
Confidence 9999999999988877 6788999999999999999 999 99999999999999999999999888877777
Q ss_pred ccCCCCchHHHHHhhHHHHHHHH-HHhcccCCChHHHHH---hCCC----HHHHHHHHHHHc---CCcch------HHHH
Q 047115 217 KIKGSWGWRISLAMAAVPASILT-IGSLFLPETPNSIIQ---RNKD----HQKAEEILQIVR---NTTDV------KAEL 279 (522)
Q Consensus 217 ~~~~~~gwr~~f~i~~~~~~~~~-~~~~~lpesp~~~~~---~~~~----~~~~~~~~~~~~---~~~~~------~~~~ 279 (522)
+. .|||+.+++.+.+.+-.. .....-|.++..... +.++ .+......++.. +.... +.+.
T Consensus 195 ~~---~G~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (509)
T KOG2504|consen 195 SK---YGWRGALLIFGGISLNVLVAGALLRPLSPPKKPNEEKDLRNSAASVESTPKPVELRISERDSGLKKLSLSNLATL 271 (509)
T ss_pred HH---hCcHHHHHHHHHHHHHHHHHHHHcCCCCcCCCchhhhhhccccccccccccccccccccCCCCCCcccccchhhh
Confidence 44 489998887555444333 333344422211000 0000 000000000000 00000 0000
Q ss_pred H---------HHHHHH----HhhccccchhHHHHHHHHH-HhhhccchhhHhcHHHHHHHcCCCCchhhHHHhHHHHHHH
Q 047115 280 D---------DIIRAS----SKIIHRIYRPQLVMAILIP-FQQVTRVNVISFNAPVLFMTIKVRKSTSLLMSAVVPDGIG 345 (522)
Q Consensus 280 ~---------~~~~~~----~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 345 (522)
+ ..+... .++++. +.++.+.+. .....++.....++|.+.+..|++..++. .+.+..++..
T Consensus 272 ~~~~~~~~~~~~~~~~~~~d~~ll~~----~~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa-~l~Siigi~~ 346 (509)
T KOG2504|consen 272 KRGPDKWRNSPLQAFLSMLDLSLLKD----PKFLLLALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDAA-FLLSIIGVSD 346 (509)
T ss_pred hhCCccccccchhhhhhhhhHHHHcC----chHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhH-HHHHHHHHhh
Confidence 0 000000 133332 444444444 55566677788889999999999999999 9999999999
Q ss_pred HHHHHhHHHHhhhccch--HHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcchhhHHHHHHHHHHHHhhhcccccccccc
Q 047115 346 TVSTILPMILADKLGRT--VLFLLGGIQILVSQVMIRSIMAAQLGDHGGFNIGYAYLILFLICVYKAGFAFSRGPLGWLV 423 (522)
Q Consensus 346 ~~~~~~~g~l~dr~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (522)
++++++.|+++|+...+ .+..++.+..+++.+.+... ..+..+...++..+.....+......+
T Consensus 347 i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~--------------~~~~~l~~~~~~fG~~~g~~~~l~~~i 412 (509)
T KOG2504|consen 347 IIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPFA--------------TTYVGLIVFSILFGFCVGSFSSLTPVI 412 (509)
T ss_pred hhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHh--------------ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998843 34444444444444333322 122233333333222223344444456
Q ss_pred ccccCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-chhhHHHHHHHHHHHHHHHhhcc
Q 047115 424 PSEIFPLEIRSAGQSITVAVDLLFTFLVAQTFLAMLCHFK-AGVFFCFGGWVAFMTTFVHFFLP 486 (522)
Q Consensus 424 ~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~i~~~~~~~~~~ 486 (522)
+.|+.+.++-..+.|+...+..++..++|++.+.+.|..+ +...+.+.+++.+.+..+++..+
T Consensus 413 ~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 413 LVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred HHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHHHHhH
Confidence 6899999999999999999999999999999999999887 66666666666666666666666
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.9e-21 Score=203.83 Aligned_cols=329 Identities=13% Similarity=0.086 Sum_probs=210.7
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhh----hcccc-ccccccccCcccchhhhhhhhhhhhhhhhcccccccc
Q 047115 56 YGKFDSQLLAAFTSSLYIAGLIAFLFASKVTRA----FGRKA-SILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSC 130 (522)
Q Consensus 56 ~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr----~Grk~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (522)
++|+++.+.|++.++..+..++..|+.|+++|| +|||| .++ .
T Consensus 29 ~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~---------------------------------~ 75 (437)
T TIGR00792 29 VLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLL---------------------------------I 75 (437)
T ss_pred ccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHH---------------------------------H
Confidence 348899999999999999999999999999997 67755 455 7
Q ss_pred hhhhhHHHHHHHhhhhh------hHHHHHHHHHHHhhhhhhhcccccccccccccccccccc-CCcc-hhHHHHHHHHHH
Q 047115 131 CSCCYSNHCSIGGAAFN------IYMLILGCVLLGVGIGFTSQSIQRFNQFAYMILLSSNFE-TTRL-SHIDFLLQISIC 202 (522)
Q Consensus 131 ~~~l~~~~~~~~~~a~~------~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~i~~~~~-~~~~-g~~~~~~~~~~~ 202 (522)
+....+++.+++.+.++ ...+++.+++.+++.+...+...++ ..| .. ++++ ++..++.+.+..
T Consensus 76 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al--------~~~-~~~~~~~R~~~~~~~~~~~~ 146 (437)
T TIGR00792 76 GAIPFSIVLVLLFTTPDFSATGKLVYAYITYILLGLFYSFVNIPYWSL--------VPA-ITLDPRERESLSTFRRFGAT 146 (437)
T ss_pred hHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHhhcccHhhC--------ccc-ccCCHHHHHHHHHHHHHHHH
Confidence 77778877777766553 4566778888898888776666666 888 66 4455 899999888888
Q ss_pred HHHHHHHHHHhhhhcc----CCCCchHHHHHhhHHHHHHHH-HHhcccCCChHHHHHhCCCHHHHHHHHHHHcCCcchHH
Q 047115 203 YLILSANLLNYGTQKI----KGSWGWRISLAMAAVPASILT-IGSLFLPETPNSIIQRNKDHQKAEEILQIVRNTTDVKA 277 (522)
Q Consensus 203 lG~~~~~~~~~~l~~~----~~~~gwr~~f~i~~~~~~~~~-~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (522)
+|.++++.+...+... .+..+||+.+.+.++..++.. +..++.||+++. .+ .++.+ +.+.
T Consensus 147 ~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~e~~~~----~~-~~~~~--------~~~~-- 211 (437)
T TIGR00792 147 LGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIGVVSLIICFFGTKERYSE----IP-KNIEK--------KLSL-- 211 (437)
T ss_pred HHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHHHHHHcCCEecCCC----CC-ccccc--------CCCH--
Confidence 8887776665444321 124589999888776655544 445667776421 01 00000 0001
Q ss_pred HHHHHHHHHHhhccccchhHHHHHHHHHHhhhccchhhHhcHHHHHHH-cCCCCchhhHHHhHHHHHHHHHHHHhHHHHh
Q 047115 278 ELDDIIRASSKIIHRIYRPQLVMAILIPFQQVTRVNVISFNAPVLFMT-IKVRKSTSLLMSAVVPDGIGTVSTILPMILA 356 (522)
Q Consensus 278 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 356 (522)
.+..+++++++..+......++ .....+....+.+.+.+. .+ +....+ .......++.+++.++.++++
T Consensus 212 -----~~~~~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~i~~ii~~~~~~~l~ 281 (437)
T TIGR00792 212 -----KQIFKALFKNDQLLILCLAYLF---YNLAFNIKNGVQVYYFTYVLG-DPELFS-YMGSIAIVAGLIGVLLFPRLV 281 (437)
T ss_pred -----HHHHHHHhCCHHHHHHHHHHHH---HHHHHHHHcchhheeEeeecC-ChHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 1111133433322222222222 222222222233333332 23 344445 566677899999999999999
Q ss_pred hhccchHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcchhhHHHHHHHHHHHHhhhccccccccccccccCc-------
Q 047115 357 DKLGRTVLFLLGGIQILVSQVMIRSIMAAQLGDHGGFNIGYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFP------- 429 (522)
Q Consensus 357 dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p------- 429 (522)
||+|+|+.+..+..+..++.+.+... + +..+...+..++.+.+.+.. .+..+++.+|..+
T Consensus 282 ~r~g~~~~~~~~~~~~~~~~~~~~~~-----------~-~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~ 348 (437)
T TIGR00792 282 KKFGRKILFAGGILLMVLGYLIFFFA-----------G-SNLPLILVLIILAGFGQNFV-TGLVWALVADTVDYGEWKTG 348 (437)
T ss_pred HHhCcHHHHHHHHHHHHHHHHHHHHc-----------c-hhHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhhhhhhhcC
Confidence 99999999888877766665544332 1 11223333333333333332 3344555566654
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 047115 430 LEIRSAGQSITVAVDLLFTFLVAQTFLAMLCHFKA 464 (522)
Q Consensus 430 ~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~ 464 (522)
++.+|...|+.+....++..+++.+.+.+.+..|+
T Consensus 349 ~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G~ 383 (437)
T TIGR00792 349 VRAEGLVYSVRTFVRKLGQALAGFLVGLILGIIGY 383 (437)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 55679999999999999999999999999887653
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=3e-21 Score=187.59 Aligned_cols=338 Identities=13% Similarity=0.065 Sum_probs=209.5
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhhhhHHH
Q 047115 59 FDSQLLAAFTSSLYIAGLIAFLFASKVTRAFGRKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCCYSNH 138 (522)
Q Consensus 59 ~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 138 (522)
.+....|.+.|++++...+.++.+|.++||+|||++++ +|....++.
T Consensus 65 ~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll---------------------------------~c~~~va~s 111 (451)
T KOG2615|consen 65 ASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLL---------------------------------ACLIGVALS 111 (451)
T ss_pred ccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHH---------------------------------HHHHHHHHH
Confidence 46778899999999999999999999999999999999 999999999
Q ss_pred HHHHhhhhhhHHHHHHHHHHHhhhhhhhccccccccccccccccccccCCcc-hhHHHHHHHHHHHHHHHHHHHHhhhhc
Q 047115 139 CSIGGAAFNIYMLILGCVLLGVGIGFTSQSIQRFNQFAYMILLSSNFETTRL-SHIDFLLQISICYLILSANLLNYGTQK 217 (522)
Q Consensus 139 ~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~-g~~~~~~~~~~~lG~~~~~~~~~~l~~ 217 (522)
..+.+.++|+..+++.|++.|+..| |.-+.+++++| ..++++ ++.++.....+++|.++||.+|+.+..
T Consensus 112 ~ll~~~S~~F~afv~aR~l~Gi~kg---------nl~v~rAiisd-V~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~ 181 (451)
T KOG2615|consen 112 YLLWALSRNFAAFVLARFLGGIFKG---------NLSVIRAIISD-VVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ 181 (451)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhccC---------chHHHHHHHHh-hcChhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence 9999999999777778999999998 44444555999 888888 999999999999999999999999987
Q ss_pred c---CCCCchHHHHHhhHHHHHH-HHHHhcccCCChHHHHHhCCCHHHHHHHHHHHcCCcchHHHHHHHHHH-HHhhccc
Q 047115 218 I---KGSWGWRISLAMAAVPASI-LTIGSLFLPETPNSIIQRNKDHQKAEEILQIVRNTTDVKAELDDIIRA-SSKIIHR 292 (522)
Q Consensus 218 ~---~~~~gwr~~f~i~~~~~~~-~~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~ 292 (522)
+ .+.+-+-.+-++..+.+.. .....+++||+-. .+++ +++..+ .++..++ +.+.....+. .....++
T Consensus 182 f~~~~g~~p~alP~~~v~i~a~~~v~~~~~~lpETL~---~rk~-~~~~~~-~~~~~~~---~~~~~~~~~~~~v~~lrn 253 (451)
T KOG2615|consen 182 FSSISGSYPFALPCLLVFILAAGDVTFFPWFLPETLP---LRKR-NDEHST-LQEAADD---RLALLKFARIFKVAALRN 253 (451)
T ss_pred hHhhhccCchHHHHHHHHHHHHHHHHHHHHhCCcccc---chhh-cccccc-hhhhhhh---hhhhcchhhhhhhhhhcC
Confidence 2 2222122222223333333 4556688999842 2222 211110 0010000 0111111100 0011222
Q ss_pred cchhHHHHHHHH---H-HhhhccchhhHhcHHHHH-HHcCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhhcc--chHHH
Q 047115 293 IYRPQLVMAILI---P-FQQVTRVNVISFNAPVLF-MTIKVRKSTSLLMSAVVPDGIGTVSTILPMILADKLG--RTVLF 365 (522)
Q Consensus 293 ~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g--~~~~~ 365 (522)
............ . +.....+....++.+.+. .++|+++.+.+ .+....++.+.+.+....+..||.. .+-.+
T Consensus 254 ~p~~~~i~~~~i~~l~~~ly~~l~s~~~~t~~~l~~~rfg~ss~~~G-~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l 332 (451)
T KOG2615|consen 254 PPLLDFISVLRIFGLHYFLYLELFSGLENTVLFLTHGRFGYSSMQQG-KVLSTTGLLMLVIQLALVPILPRYKGNIKAVL 332 (451)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcCccCCChhhhe-eeeehhhHHHHHHHHhccccccccccchhhHH
Confidence 111111111111 1 222222222223333331 56799999988 7777778877777777777777665 33333
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCCCCcchhhHHHHHHHHHHHHhhhccccccccccccccCchhhhhHHHHHHHHHHH
Q 047115 366 LLGGIQILVSQVMIRSIMAAQLGDHGGFNIGYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDL 445 (522)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ 445 (522)
..+...+.-..+++... ..+........+..+......+.+ ..+.....|++.||+.+|+....+.
T Consensus 333 ~~~l~~~vP~~llls~~-------------~~~~~l~~~s~l~sf~~A~~vt~L-t~Lv~~~~~~~qrG~~~Gi~~Sl~a 398 (451)
T KOG2615|consen 333 LFSLLLIVPAFLLLSLA-------------RTPVVLYLGSTLKSFSTASVVTCL-TSLVHKYGPQSQRGTLNGIFRSLGA 398 (451)
T ss_pred HHHHHHHHHHHHHHhcc-------------ccchhhhHHHHHHHHHHHHhhHHH-HHHHHhcCCcccchHHHHHHHHHHH
Confidence 33333322222222211 112222233333333333233333 4555788999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhc
Q 047115 446 LFTFLVAQTFLAMLCHF 462 (522)
Q Consensus 446 ~~~~~~~~~~~~~~~~~ 462 (522)
++-+++|.+.|......
T Consensus 399 laRaiGPlv~g~i~~Ws 415 (451)
T KOG2615|consen 399 LARAIGPLVSGVIFSWS 415 (451)
T ss_pred HHHHhhhhhhheeEEEe
Confidence 99999999988776543
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.6e-19 Score=175.33 Aligned_cols=322 Identities=16% Similarity=0.080 Sum_probs=240.0
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhh
Q 047115 54 SNYGKFDSQLLAAFTSSLYIAGLIAFLFASKVTRAFGRKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSC 133 (522)
Q Consensus 54 ~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (522)
++|+|+|.+..|+++++..++..+.+++..++++|+|.++.+. .+++
T Consensus 39 r~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~---------------------------------~~Ll 85 (395)
T COG2807 39 RQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLF---------------------------------LALL 85 (395)
T ss_pred HHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHH---------------------------------HHHH
Confidence 4555899999999999999999999999999999999999999 9999
Q ss_pred hhHHHHHHHhhhhhhHHHHHHHHHHHhhhhhhhccccccccccccccccccccCCcchhHHHHHHHHHHHHHHHHHHHHh
Q 047115 134 CYSNHCSIGGAAFNIYMLILGCVLLGVGIGFTSQSIQRFNQFAYMILLSSNFETTRLSHIDFLLQISICYLILSANLLNY 213 (522)
Q Consensus 134 l~~~~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~lG~~~~~~~~~ 213 (522)
+.++|.++-... +.+.++.+-.+.|.|.+...+..+.. +.+ .+|++-+..++++.+..++|..+++.+..
T Consensus 86 li~~G~~iR~~~-~~~~L~~gt~l~G~gIav~nVLLPsl--------IK~-~Fpk~~~~mtglYs~sl~~~aaLaa~lav 155 (395)
T COG2807 86 LIAAGILIRSLG-GLPLLFLGTLLAGAGIAVINVLLPSL--------IKR-DFPKRVGLMTGLYSTSLGAGAALAAALAV 155 (395)
T ss_pred HHHHHHHHHhcc-cHHHHHHHHHHHHhhHHHHHHhhhHH--------HHh-hcccchhhHHhHHHHHHHHHHHHHhhhhh
Confidence 999999988777 88899999999999999999999999 999 88877799999999999999999999988
Q ss_pred hhhccCCCCchHHHHHhhHHHHHHHHHHhcccCCChHHHHHhCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHHhhcccc
Q 047115 214 GTQKIKGSWGWRISLAMAAVPASILTIGSLFLPETPNSIIQRNKDHQKAEEILQIVRNTTDVKAELDDIIRASSKIIHRI 293 (522)
Q Consensus 214 ~l~~~~~~~gwr~~f~i~~~~~~~~~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 293 (522)
.+.+.. .|||....+-+++++..++.++. ...|.. . .....+..++ .++++++
T Consensus 156 pla~~~--~gW~~aL~~WAl~allAl~~WlP--q~~r~~----~-~~~~~~~~~~------------------~~vw~~~ 208 (395)
T COG2807 156 PLAQHS--GGWRGALGFWALLALLALLIWLP--QALREQ----A-ASIATKLVSV------------------RKVWRSP 208 (395)
T ss_pred HHHHhh--ccHHHHHHHHHHHHHHHHHHHhh--hccccc----c-cccccccccc------------------cccccCc
Confidence 888665 38999998888888777665542 211110 0 0000000000 0234333
Q ss_pred chhHHHHHHHHHHhhhccchhhHhcHHHHHHHcCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhhc-cchHHHHHHHHHH
Q 047115 294 YRPQLVMAILIPFQQVTRVNVISFNAPVLFMTIKVRKSTSLLMSAVVPDGIGTVSTILPMILADKL-GRTVLFLLGGIQI 372 (522)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~ 372 (522)
.-+.+.+ ....+...++....|+|.++.+.|+|..+++ .+.+...+..++.++....+.+|. .+|+........+
T Consensus 209 ~aW~vtL---fmGlqS~~~Y~~~~WLP~ili~~G~sa~~aG-~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~ 284 (395)
T COG2807 209 LAWQVTL---FMGLQSLLYYIVIGWLPAILIDRGLSAAEAG-SLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLM 284 (395)
T ss_pred hhHHHHH---HHHhhHHHHHHHHHHHHHHHHHcCCCHHHhh-hHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHH
Confidence 3333322 2245555667788999999999999999999 999999999999999999999975 4566666666666
Q ss_pred HHHHHHHHHHHHHhhCCCCCCcchhhHHHHHHHHHHHHhhhcccccccc-ccccccCchhhhhHHHHHHHHHHHHHHHHH
Q 047115 373 LVSQVMIRSIMAAQLGDHGGFNIGYAYLILFLICVYKAGFAFSRGPLGW-LVPSEIFPLEIRSAGQSITVAVDLLFTFLV 451 (522)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~ 451 (522)
.++.+.+.+.. ....+.. ..+.+.+.+..+ ++.. ....+.-.++..++-.|+.+.++++....+
T Consensus 285 l~G~~G~~~~P-----------~~~~~lw---~~llG~G~G~~F-~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~G 349 (395)
T COG2807 285 LVGLVGLLLAP-----------GQLPILW---ALLLGLGQGGAF-PLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFG 349 (395)
T ss_pred HHHHHHHHHhh-----------hhHHHHH---HHHHhCccchHH-HHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhh
Confidence 66666655432 1222222 223333333222 2222 222344556777888899999999999999
Q ss_pred HHHHHHHHHhccc
Q 047115 452 AQTFLAMLCHFKA 464 (522)
Q Consensus 452 ~~~~~~~~~~~g~ 464 (522)
|.++|.+.|..|.
T Consensus 350 P~l~G~lhDa~gs 362 (395)
T COG2807 350 PWLFGFLHDATGS 362 (395)
T ss_pred hhhHhHHHHhcCC
Confidence 9999999999883
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.3e-19 Score=178.55 Aligned_cols=352 Identities=11% Similarity=0.034 Sum_probs=248.0
Q ss_pred HHHHHHHHhhhhhcchhhccccccHHHHHHhhhhhhhcccCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 047115 9 CIVAATSGLIFGYDIGVSGGVTLMEPFLKKCFLEVYKKMKEDPKISNYGKFDSQLLAAFTSSLYIAGLIAFLFASKVTRA 88 (522)
Q Consensus 9 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr 88 (522)
.+....-.++.|+.....+... |.+++.| +++..+.+++...++.|+.+++++.|++.+|
T Consensus 15 ~v~~t~lFfl~G~~~~l~diLi--p~l~~~f------------------~ls~~~a~liqfaff~gYf~~~lpa~~~~kk 74 (422)
T COG0738 15 FVLLTSLFFLWGFITCLNDILI--PHLKEVF------------------DLTYFEASLIQFAFFGGYFIMSLPAGLLIKK 74 (422)
T ss_pred HHHHHHHHHHHHHHhhcchhhH--HHHHHHh------------------CccHHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 3445555678888887777665 6666666 7899999999999999999999999999999
Q ss_pred hccccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhhhhHHHHHHHh---hhhhhHHHHHHHHHHHhhhhhh
Q 047115 89 FGRKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCCYSNHCSIGG---AAFNIYMLILGCVLLGVGIGFT 165 (522)
Q Consensus 89 ~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~a~~~~~l~~~r~l~G~~~g~~ 165 (522)
+|+|+.++ .++.++++++.+.. ...++..++++-++.|.|.|..
T Consensus 75 ~gyk~gi~---------------------------------lgL~l~avg~~lF~pAa~~~~y~~FL~~lFila~Gi~~L 121 (422)
T COG0738 75 LGYKAGIV---------------------------------LGLLLYAVGAALFWPAASSKSYGFFLVALFILASGIGLL 121 (422)
T ss_pred hhhHHHHH---------------------------------HHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhHHH
Confidence 99999999 99999999999985 5578899999999999999999
Q ss_pred hccccccccccccccccccccCCcc-hhHHHHHHHHHHHHHHHHHHHHhhhhccC-----C-----------CCchHHHH
Q 047115 166 SQSIQRFNQFAYMILLSSNFETTRL-SHIDFLLQISICYLILSANLLNYGTQKIK-----G-----------SWGWRISL 228 (522)
Q Consensus 166 ~~~~~~~~~~~~~~~i~~~~~~~~~-g~~~~~~~~~~~lG~~~~~~~~~~l~~~~-----~-----------~~gwr~~f 228 (522)
.+.+..+ ++. ..++++ .+.+.+.+...++|.+++|+++..+.... + ...||++|
T Consensus 122 etaaNp~--------v~~-lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~~~~~~~~~~~~~~~v~~pY 192 (422)
T COG0738 122 ETAANPY--------VTL-LGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMSAAQILAIKGADASSVQFPY 192 (422)
T ss_pred HhccchH--------HHH-hCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhHH
Confidence 9999999 999 999988 99999999999999999999988776420 0 12477788
Q ss_pred HhhHHHHHHHHHHhc--ccCCChHHHHHhCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Q 047115 229 AMAAVPASILTIGSL--FLPETPNSIIQRNKDHQKAEEILQIVRNTTDVKAELDDIIRASSKIIHRIYRPQLVMAILIPF 306 (522)
Q Consensus 229 ~i~~~~~~~~~~~~~--~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 306 (522)
...+...+++.+... ..|+.+.- . +++.++ + + .. ..+++++++.+...++.+++
T Consensus 193 l~~~~~lvll~v~~~~~k~p~~~~~-----~-~~~~~~-------~-~--~~-------~~~l~~~~~~~~gvl~~FlY- 248 (422)
T COG0738 193 LILAGLLVLLAVLILLSKLPDLQVA-----A-PSLGAS-------G-S--AG-------LSSLFQNKHLRLGVLAIFLY- 248 (422)
T ss_pred HHHHHHHHHHHHHHHhccCCcCCcc-----c-cccccc-------c-c--ch-------HHHHHhChHHHHHHHHHHHH-
Confidence 776555544444333 33443211 0 110000 0 0 00 00344444445444444444
Q ss_pred hhhccchhhHhcHHHHHHH-cCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHH
Q 047115 307 QQVTRVNVISFNAPVLFMT-IKVRKSTSLLMSAVVPDGIGTVSTILPMILADKLGRTVLFLLGGIQILVSQVMIRSIMAA 385 (522)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (522)
.........+.+.++.+ .|.+..++. ...+...++.++|++++.++..|+...|.+........+.++......
T Consensus 249 --VG~Eva~gsfl~~y~~~~~g~~~~~aa-~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~~~l~~-- 323 (422)
T COG0738 249 --VGAEVAIGSFLVSYLEELLGLNEQQAA-YYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLLAVALIG-- 323 (422)
T ss_pred --HhHHHHHHHHHHHHHHhcCCccHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhc--
Confidence 33334456777888866 788888888 999999999999999999999999988888766554444444333331
Q ss_pred hhCCCCCCcchhhHHHHHHHHHHHHhhhccccccccccccccCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Q 047115 386 QLGDHGGFNIGYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLVAQTFLAMLCHFKAG 465 (522)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~ 465 (522)
+ ...+....+.+.+.+..++ ..++...+..| ++.+.+ |.......+|+.+.|++.|.+.|+.+..
T Consensus 324 ----------g--~v~~~~l~~ig~F~simfP-TIfslal~~l~-~~ts~~-s~~l~maivGGAiiP~l~G~i~d~~g~~ 388 (422)
T COG0738 324 ----------G--VVALYALFLIGLFNSIMFP-TIFSLALKNLG-EHTSVG-SGLLVMAIVGGAIIPPLQGVIADMFGIQ 388 (422)
T ss_pred ----------C--hHHHHHHHHHHHHhHHHHH-HHHHHHHhccC-cccccc-ceeeeeheecchHHHHHHHHHHHhhhhH
Confidence 1 1223333333344444333 44455567777 443333 3444556678899999999999998844
Q ss_pred h
Q 047115 466 V 466 (522)
Q Consensus 466 ~ 466 (522)
.
T Consensus 389 ~ 389 (422)
T COG0738 389 L 389 (422)
T ss_pred H
Confidence 3
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.6e-19 Score=183.92 Aligned_cols=368 Identities=9% Similarity=-0.067 Sum_probs=223.8
Q ss_pred HHHHHHhhhhhcchhhccccccHHHHHHhhhhhhhcccCCCCCCCCCCCchhHHHHH--HHHHHHHHHHHHHHHH-Hhhh
Q 047115 11 VAATSGLIFGYDIGVSGGVTLMEPFLKKCFLEVYKKMKEDPKISNYGKFDSQLLAAF--TSSLYIAGLIAFLFAS-KVTR 87 (522)
Q Consensus 11 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~~~~--~s~~~~~~~i~~~~~g-~l~d 87 (522)
......+.+|.-.+...+.. |.+.++. |.|.+++|.+ .+++.+...+.+|+.+ +..|
T Consensus 5 ~~~~ly~~~g~~~~~~~p~l--p~~l~~~------------------g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~ 64 (390)
T TIGR02718 5 TLGLLYLSQGIPIGLAMDAL--PTLLRED------------------GAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSW 64 (390)
T ss_pred HHHHHHHHHHhHHHHHHHHH--HHHHHHc------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 33445577788777776665 7777766 6799999997 4677888888888884 5799
Q ss_pred hhccccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhhh-hHHHHHHHh---hhhh-hHHHHHHHHHHHhhh
Q 047115 88 AFGRKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCC-YSNHCSIGG---AAFN-IYMLILGCVLLGVGI 162 (522)
Q Consensus 88 r~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~---~a~~-~~~l~~~r~l~G~~~ 162 (522)
|+||||.++ ++..+ .+......+ ...+ ...++..-++.++..
T Consensus 65 ~~g~r~~~i---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (390)
T TIGR02718 65 RLGRRRSWV---------------------------------LPMQCLVSACLASLALVGPDVAGAGWAVGLLACASLAS 111 (390)
T ss_pred cCCcchhHH---------------------------------HHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHH
Confidence 999999975 33322 221111111 2222 334445555666777
Q ss_pred hhhhccccccccccccccccccccCCcc-hhHHHHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHhhHHHHHHHHHH
Q 047115 163 GFTSQSIQRFNQFAYMILLSSNFETTRL-SHIDFLLQISICYLILSANLLNYGTQKIKGSWGWRISLAMAAVPASILTIG 241 (522)
Q Consensus 163 g~~~~~~~~~~~~~~~~~i~~~~~~~~~-g~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~gwr~~f~i~~~~~~~~~~~ 241 (522)
+...+....+ ..| ..++++ +...+....+..+|.++++.....+.+. .|||..|++.++..++..+.
T Consensus 112 a~~d~~~d~~--------~~~-~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~---~gw~~~f~~~a~l~~~~~~~ 179 (390)
T TIGR02718 112 ATQDIATDGM--------AAE-HFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGK---FGQRPAFLLVACVPLASLVC 179 (390)
T ss_pred HHHHHHHHHH--------HHH-hCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCHHHHHHHHHHHHHHHHHH
Confidence 7777777777 788 777777 8888888888899999998877776644 38999999987776665544
Q ss_pred hcccCCChHHHHHhCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHHhhccccchhHHHHHHHHHHhhhccchhhHhcHHH
Q 047115 242 SLFLPETPNSIIQRNKDHQKAEEILQIVRNTTDVKAELDDIIRASSKIIHRIYRPQLVMAILIPFQQVTRVNVISFNAPV 321 (522)
Q Consensus 242 ~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (522)
.++++|+++ ++++ .++.+ . + ...+.++++..+......++. .........+.+.
T Consensus 180 ~~~~~~~~~---~~~~-~~~~~------------~---~----~~~~~l~~~~~~~~~~~~~l~---~~~~~~~~~~~~~ 233 (390)
T TIGR02718 180 VLWLKDRAV---ASPE-APLAR------------R---A----SLFRFFRRPLAWSLLALALLS---AMTAVSGFGLSKL 233 (390)
T ss_pred HHHcCCCCc---Cccc-cchhh------------H---H----HHHHHHcCcCHHHHHHHHHHH---HHHHHHHHHHhhH
Confidence 444444321 0111 00000 0 0 011344444333333322222 1122233345677
Q ss_pred HHHHcCCCCchhhHHHhHHHH-HHHHHHHHhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcchhhHH
Q 047115 322 LFMTIKVRKSTSLLMSAVVPD-GIGTVSTILPMILADKLGRTVLFLLGGIQILVSQVMIRSIMAAQLGDHGGFNIGYAYL 400 (522)
Q Consensus 322 ~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (522)
++++.|++.++.+ ....... ...+++.++.|++.||+|+|+.+..+.....+........... . .......
T Consensus 234 ~l~~~G~s~~~ig-~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~------~-~~~~~~~ 305 (390)
T TIGR02718 234 YLVDAGWPLEWIG-RLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAF------W-LAPGIAV 305 (390)
T ss_pred HHHhcCCCHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHc------c-cCCcHHH
Confidence 7788899999988 6666655 4667788999999999999998887665543332222211100 0 0011111
Q ss_pred HHHHHHHHHHhhhccccccccccccccCch-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHH
Q 047115 401 ILFLICVYKAGFAFSRGPLGWLVPSEIFPL-EIRSAGQSITVAVDLLFTFLVAQTFLAMLCHFKAGVFFCFGGWVAFMT 478 (522)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~-~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~ 478 (522)
......+.....+...... .....+..++ +.+++.+++.+....++..++|.+.|.+.++.|+...+..+..+.+.+
T Consensus 306 ~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a 383 (390)
T TIGR02718 306 AWSCSAFGSLITGITSVAI-YTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLA 383 (390)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHH
Confidence 1222222222223222222 2332344554 889999999999999999999999999999988755444444444433
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.3e-18 Score=185.14 Aligned_cols=366 Identities=10% Similarity=0.015 Sum_probs=224.1
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhhhhHH
Q 047115 58 KFDSQLLAAFTSSLYIAGLIAFLFASKVTRAFGRKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCCYSN 137 (522)
Q Consensus 58 ~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 137 (522)
|+|.++.+++.++. ....+++++.|++.||+|||+++. ++.+++++
T Consensus 58 gls~~~l~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vll---------------------------------ig~ll~~i 103 (591)
T PTZ00207 58 NLTQRDLSTITTVG-IAVGYFLLPYSFIYDYLGPRPIFV---------------------------------LSMTVFCL 103 (591)
T ss_pred CcCHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHH---------------------------------HHHHHHHH
Confidence 78999999998874 455677888999999999999999 99999999
Q ss_pred HHHHHhhh------hhhHHHHHHHHHHHhhhhhhhccccccccccccccccccccCCcchhHHHHHHHHHHHHHHHHH-H
Q 047115 138 HCSIGGAA------FNIYMLILGCVLLGVGIGFTSQSIQRFNQFAYMILLSSNFETTRLSHIDFLLQISICYLILSAN-L 210 (522)
Q Consensus 138 ~~~~~~~a------~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~lG~~~~~-~ 210 (522)
+.++++++ .+++.+++.|++.|+|.+...+..... +.+ ++|++||++.++...+..+|.++.+ +
T Consensus 104 G~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~--------i~~-~Fp~~RG~a~Gi~~~~~gLGsaI~~~l 174 (591)
T PTZ00207 104 GTLLFALTFQEVIEGSVVRLSVYNGLMTLGCMLFDLGAVVT--------VLS-VFPSNRGAVVAIMKTFTGLGSAILGSI 174 (591)
T ss_pred HHHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHH--------HHH-hChhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999987 689999999999999999998888888 999 8886669999999999999997644 4
Q ss_pred HHhhhhccCCCCchHHHHHhhHHHHHH-HHHHhcc--cCCChHHHHHhCCCHHHHHHHHHHHcCCc--------------
Q 047115 211 LNYGTQKIKGSWGWRISLAMAAVPASI-LTIGSLF--LPETPNSIIQRNKDHQKAEEILQIVRNTT-------------- 273 (522)
Q Consensus 211 ~~~~l~~~~~~~gwr~~f~i~~~~~~~-~~~~~~~--lpesp~~~~~~~~~~~~~~~~~~~~~~~~-------------- 273 (522)
....+. .+|+..|++.++..++ .++...+ .|++|++..++++ .++.++..++.++..
T Consensus 175 ~~~l~~-----~~~~~~fl~l~vl~~vv~ll~~~~vr~p~~~~~~~~~~~-~~~~~~~~~~~~~~~y~~q~~p~~~f~~~ 248 (591)
T PTZ00207 175 QLAFFS-----DNTSAYFFFLMSFALVVGILAIVFMRLPPFHLTGYQEKH-LDEEEKAQRLMRKGVYLKQKAPMWRFVYG 248 (591)
T ss_pred HHHHHH-----HhHHHHHHHHHHHHHHHHHHHHhheeCCcchhhcccccC-CCHHHHHHHhhhhhhhhhcCCCceehhhH
Confidence 444443 2577766665444333 3333343 4555554323322 122222111100000
Q ss_pred -------------------------ch----------------------------------HHHHHH----------H--
Q 047115 274 -------------------------DV----------------------------------KAELDD----------I-- 282 (522)
Q Consensus 274 -------------------------~~----------------------------------~~~~~~----------~-- 282 (522)
.. +.+..+ .
T Consensus 249 ~~i~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~v~~~lll~~p~l~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (591)
T PTZ00207 249 FVILIILIVFLPLQGALVAYLKLGSNFKVGFAVTVIVLTVIFPFMAFPLTTFDGKRPHDDSDGKAKEHVEAGEEVSAAED 328 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCcCCCcccccccccccccccccccc
Confidence 00 000000 0
Q ss_pred ---HHHHH--------hhccccchhHHHHHHHHHHhhhccchhhHhcHHHHHHHc-CCCCch--hhHHHhHHHHHHHHHH
Q 047115 283 ---IRASS--------KIIHRIYRPQLVMAILIPFQQVTRVNVISFNAPVLFMTI-KVRKST--SLLMSAVVPDGIGTVS 348 (522)
Q Consensus 283 ---~~~~~--------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~--~~~~~~~~~~~~~~~~ 348 (522)
..+.+ .++.......+|+.+...++.......+...+..+.+.+ |.+.++ .. ...++.++.+.+|
T Consensus 329 ~~~~~~~~~~~P~~~~t~~q~l~~~d~Wll~~~~~cg~g~gl~~~~N~~qI~~sl~g~~~~~~~~~-~~vsL~si~~~~G 407 (591)
T PTZ00207 329 KVVETDVDYIAPQFQETFIEGLKTARLWCLLWSIFCCVGAHFVIIFNARFIYTALAGEAPDDALNT-LLTVLNGVGSAVG 407 (591)
T ss_pred ccccccccCCCCCCcchHHHHHhchhHHHHHHHHHHhhCchheeeecHHHHHHHhcCCCCCcccee-eehhhhhHHHHhh
Confidence 00000 000001122334444444555555556677788888888 774433 33 3678889999999
Q ss_pred HHhHHHHhhhccchH---------HHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcchhhHHHHHHHHHHHHhhhcccccc
Q 047115 349 TILPMILADKLGRTV---------LFLLGGIQILVSQVMIRSIMAAQLGDHGGFNIGYAYLILFLICVYKAGFAFSRGPL 419 (522)
Q Consensus 349 ~~~~g~l~dr~g~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (522)
++..|.+.....+|+ .+.+..+ +.++.+++.... +. ....+..++.+.+++..++..
T Consensus 408 Rl~~g~~~~~~~~~~~~~r~prt~~l~~~~~-~~~~~lll~~~~----------p~---~~L~~~~~lvg~~~G~~~~~~ 473 (591)
T PTZ00207 408 RLCMSYFEIWSQKRRAEDRVPITIALFIPSV-CIITMLTLFLTL----------PK---AALPLPYFIAAFANGFMAATI 473 (591)
T ss_pred HHHHHHHHHHHHhhccccccchhHHHHHHHH-HHHHHHHHHHHC----------Cc---cHhHHHHHHHHHHhhHhHHHH
Confidence 999998873322222 1222222 334433333321 11 233344444445555554433
Q ss_pred ccccccccCchhhhhHHHHHHHHHHHHHHHHH-HHHHHHHHHhcc--------------chhhHHHHHHHHHHHHHHHhh
Q 047115 420 GWLVPSEIFPLEIRSAGQSITVAVDLLFTFLV-AQTFLAMLCHFK--------------AGVFFCFGGWVAFMTTFVHFF 484 (522)
Q Consensus 420 ~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~g--------------~~~~~~~~~~~~i~~~~~~~~ 484 (522)
...++|+|. ++-|+-.-+.....-+++.+. ..++|.++|+-. ..++++.++++++..+.....
T Consensus 474 -~~i~selFg-k~~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~~l 551 (591)
T PTZ00207 474 -ALVTRTIFA-KDPAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQADKLGQDVCTERVCVVMPLAFLLGLSFLAFITSTYV 551 (591)
T ss_pred -HHHHHHHhc-cchHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCCceeeHhHHHHHHHHHHHHHHHHhhe
Confidence 466689999 787877777666666777666 446777877431 134777777777776665554
Q ss_pred ccCCC
Q 047115 485 LPETK 489 (522)
Q Consensus 485 ~~~~~ 489 (522)
.-++|
T Consensus 552 ~~R~r 556 (591)
T PTZ00207 552 HLQYR 556 (591)
T ss_pred eeehH
Confidence 44443
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.85 E-value=1e-19 Score=185.16 Aligned_cols=332 Identities=9% Similarity=0.091 Sum_probs=218.5
Q ss_pred CCCchhH-HHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhhhh
Q 047115 57 GKFDSQL-LAAFTSSLYIAGLIAFLFASKVTRAFGRKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCCY 135 (522)
Q Consensus 57 ~~~~~~~-~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 135 (522)
+|+|.++ .|.+.++++.++++++++.|+++||+|.|+++. .+.+.+
T Consensus 56 lglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~---------------------------------l~~l~W 102 (511)
T TIGR00806 56 LNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLV---------------------------------LQALSF 102 (511)
T ss_pred cCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHH---------------------------------HHHHHH
Confidence 3889999 999999999999999999999999999999999 999999
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHhhhhhhhccccccccccccccccccccCCcc-hhHHHHHHHHHHHHHHHHHHHHhh
Q 047115 136 SNHCSIGGAAFNIYMLILGCVLLGVGIGFTSQSIQRFNQFAYMILLSSNFETTRL-SHIDFLLQISICYLILSANLLNYG 214 (522)
Q Consensus 136 ~~~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~-g~~~~~~~~~~~lG~~~~~~~~~~ 214 (522)
++.+++.++++++..+.+.|++.|++.|... +...+ +.. |+|+++ +++.++..++..+|.+++++++..
T Consensus 103 sl~t~L~~fa~Sl~~L~i~R~llGvaEA~~~-A~~sy--------I~~-WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql 172 (511)
T TIGR00806 103 VCVWLLLLLGTSVWHMQLMEVFYSVTMAARI-AYSSY--------IFS-LVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL 172 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH--------HHH-HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999 88888 999 888888 999999999999999999999988
Q ss_pred hhccCCCCchHHHHH---hhHHHHHHHHHHhcccCCChHHHHHhCCCHHH---HHHHHHHHcCCcc--h----H----HH
Q 047115 215 TQKIKGSWGWRISLA---MAAVPASILTIGSLFLPETPNSIIQRNKDHQK---AEEILQIVRNTTD--V----K----AE 278 (522)
Q Consensus 215 l~~~~~~~gwr~~f~---i~~~~~~~~~~~~~~lpesp~~~~~~~~~~~~---~~~~~~~~~~~~~--~----~----~~ 278 (522)
+. .+|||+.+. +......+.++..+++|..++.+.-++++..+ ..+ .+....++. . + ..
T Consensus 173 l~----s~gWr~y~~Ln~Isl~s~~~a~~~a~~LP~~~~sl~f~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 247 (511)
T TIGR00806 173 LV----TLGWISYSTLNIISLVFMTFSVFLALFLKRPKRSLFFNRLEDVRGALPCE-LDQMVPGPGGKLEDYLGTCRDSF 247 (511)
T ss_pred HH----hcCchhHHHHHHHHHHHHHHHHHHHHhCCCCchhhhhccccccccccccc-cccCCCCCccccchhhhhhhhHH
Confidence 44 247886554 44445556677778888666544322220000 000 011100000 0 0 11
Q ss_pred HHHHHHHHHhhccccchhHHHHHHHHH-HhhhccchhhHhcHHHHHHHcCCC-CchhhHHHhHHHHHHHHHHHHhHHHHh
Q 047115 279 LDDIIRASSKIIHRIYRPQLVMAILIP-FQQVTRVNVISFNAPVLFMTIKVR-KSTSLLMSAVVPDGIGTVSTILPMILA 356 (522)
Q Consensus 279 ~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~g~l~ 356 (522)
+..+.++..+..++ +.++-..+. ....++++-+..|...+.++..-+ +.-.+ ..-.+..+.+.+.++..|++-
T Consensus 248 ~~~l~~~~~~~y~n----~~vl~WSlWwa~a~~g~~qv~~Y~Q~LW~~v~~~~~~yNG-~veA~~tllga~~a~~ag~~~ 322 (511)
T TIGR00806 248 LVRMLSELVTIYRN----PQLLLWSLWWVFNSAGYYLITYYVHTLWGTLDESLNKYNG-AVDAASTLLGAITSFIAGFVN 322 (511)
T ss_pred HHHHHHHHHHHhcC----cchhhhhHHHHHHhhHHHHHHHHHHHHHHHcCCCccccCC-HHHHHHHHHHHHHHHHHHhhc
Confidence 12222222233322 222222333 334455566777888777766332 22344 666777788888889999986
Q ss_pred hhccchHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcchhhHHHHHHHHHHHHhhhccccccccccccccCchhhhhHH
Q 047115 357 DKLGRTVLFLLGGIQILVSQVMIRSIMAAQLGDHGGFNIGYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAG 436 (522)
Q Consensus 357 dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~ 436 (522)
.++.+--.+.++.....-+.+++... ..++.|...+...++...+.+..+ +...-+++....+.-|-.
T Consensus 323 ~~w~~~~~l~l~v~s~~~~gll~~m~-----------~t~~Iw~~Y~~yvlf~~~y~flit-ia~~~iA~~L~~~~~aLv 390 (511)
T TIGR00806 323 IRWARWSKLLIAVVSAIQAGLVFWMS-----------QSHDIWVLYVTYVLFRGIYQFLVP-IATFQIASSLSKELCALV 390 (511)
T ss_pred CCchhhHHHHHHHHHHHHHHHhhhhh-----------cccchHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcccceEEE
Confidence 66644333333333222222222111 124556666666666666665443 333333455555566777
Q ss_pred HHHHHHHHHHHHHHHHH
Q 047115 437 QSITVAVDLLFTFLVAQ 453 (522)
Q Consensus 437 ~g~~~~~~~~~~~~~~~ 453 (522)
.|+.+++..+...+...
T Consensus 391 FGiNtfvAl~LQtilT~ 407 (511)
T TIGR00806 391 FGINTFVATALKTIITA 407 (511)
T ss_pred EecHHHHHHHHHHheEE
Confidence 88877777666655443
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.2e-18 Score=184.25 Aligned_cols=377 Identities=11% Similarity=0.020 Sum_probs=227.4
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHhhhh-hccccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhhhh
Q 047115 57 GKFDSQLLAAFTSSLYIAGLIAFLFASKVTRA-FGRKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCCY 135 (522)
Q Consensus 57 ~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr-~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 135 (522)
+|++..+.+++.+.+.++..++.+++|+++|| +|||+++. .+.++.
T Consensus 43 lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~---------------------------------~~~~~~ 89 (475)
T TIGR00924 43 LGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMV---------------------------------LGGIVL 89 (475)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHH---------------------------------HHHHHH
Confidence 47899999999999999999999999999999 89999999 999999
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHhhhhhhhccccccccccccccccccccCCc---c-hhHHHHHHHHHHHHHHHHHHH
Q 047115 136 SNHCSIGGAAFNIYMLILGCVLLGVGIGFTSQSIQRFNQFAYMILLSSNFETTR---L-SHIDFLLQISICYLILSANLL 211 (522)
Q Consensus 136 ~~~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~---~-g~~~~~~~~~~~lG~~~~~~~ 211 (522)
+++.++.+++++++.++++|++.|+|.|...+...++ ++| ++|++ + +++.++.+.+.++|.++|+.+
T Consensus 90 ~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~--------~a~-~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l 160 (475)
T TIGR00924 90 MLGHFMLAMSIYPDLIFYGLGTIAVGSGLFKANPSSM--------VGK-LYERGDMPRRDGGFTLFYMSINIGSFISPLL 160 (475)
T ss_pred HHHHHHHHhcccHhHHHHHHHHHHhccccccCCHHHH--------HHH-hcCCCCcccccceehhHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998988888 999 77653 3 778999999999999999999
Q ss_pred HhhhhccCCCCchHHHHHhhHHHHHHHHHHhcccC----CChHHHHHhCCCHHHHHHHHH---------------HHcCC
Q 047115 212 NYGTQKIKGSWGWRISLAMAAVPASILTIGSLFLP----ETPNSIIQRNKDHQKAEEILQ---------------IVRNT 272 (522)
Q Consensus 212 ~~~l~~~~~~~gwr~~f~i~~~~~~~~~~~~~~lp----esp~~~~~~~~~~~~~~~~~~---------------~~~~~ 272 (522)
++.+.+. .|||+.|.+.++..++..+...+.+ +.|+. .++.+.++.+.... .....
T Consensus 161 ~g~l~~~---~g~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (475)
T TIGR00924 161 AGVIAEN---YGYHVGFNLAAVGMVIGLLTFFAGRHMLRDIGSV--PDPLSGQGKTYGKLLLALLAALALVFFCAWLMHH 235 (475)
T ss_pred HHHHHHh---cChHHHHHHHHHHHHHHHHHHHHcccccccCCCC--CCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9988754 4799999887765554444333322 22210 00000111000000 00000
Q ss_pred cchHHHHH---------HHHH-HHHhhccccchhH--HHHHHHHH-HhhhccchhhHhcHHHHHHH-cCCCCc----hhh
Q 047115 273 TDVKAELD---------DIIR-ASSKIIHRIYRPQ--LVMAILIP-FQQVTRVNVISFNAPVLFMT-IKVRKS----TSL 334 (522)
Q Consensus 273 ~~~~~~~~---------~~~~-~~~~l~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~g~~~~----~~~ 334 (522)
.+...... ...+ ..+...+...+++ ..+.+++. ...+..+.-.....+.+.++ .+.+.. ..+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~ 315 (475)
T TIGR00924 236 VVIANILLMTVTLAVIIFFFRLAFKPRLDAVARNKMYAYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVI 315 (475)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHH
Confidence 00000000 0000 0000000001111 11222222 22222222233333444332 222211 134
Q ss_pred HHHhHHHHHHHHHHHHhHHH----Hhhh-ccchHHH--HHHHHHHHHHHHHHHHHHHHhhCCCCCCcchhhHHHHHHHHH
Q 047115 335 LMSAVVPDGIGTVSTILPMI----LADK-LGRTVLF--LLGGIQILVSQVMIRSIMAAQLGDHGGFNIGYAYLILFLICV 407 (522)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~g~----l~dr-~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (522)
++.+...+.-++.+++..+ +.|| .+.+... .++.++.+++...+...... .+. ....+.++.+....+
T Consensus 316 -~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~--~~~--~~~~s~~~~i~~~~~ 390 (475)
T TIGR00924 316 -WFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWF--ADA--GGLTSPWFMVLIYLF 390 (475)
T ss_pred -HHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhh--cCC--CCccCHHHHHHHHHH
Confidence 5666666666666665444 4443 2223333 55666666666655543211 111 112344445555555
Q ss_pred HHHhhhccccccccccccccCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-hhhHHHHHHHHHHHHHHHhhcc
Q 047115 408 YKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLVAQTFLAMLCHFKA-GVFFCFGGWVAFMTTFVHFFLP 486 (522)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~i~~~~~~~~~~ 486 (522)
...+... ..|....+.++..|++.||+.+|+......++..+++.+.....+..++ +.+...+.++++.+++.++..|
T Consensus 391 ~~~ge~~-~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (475)
T TIGR00924 391 QTLGELM-ISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMALMVP 469 (475)
T ss_pred HHHHHHH-HhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 5555543 3556667778999999999999999999999999998887776665543 4455555555555555544433
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1e-18 Score=185.21 Aligned_cols=375 Identities=11% Similarity=0.040 Sum_probs=222.4
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHhhhh-hccccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhhhh
Q 047115 57 GKFDSQLLAAFTSSLYIAGLIAFLFASKVTRA-FGRKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCCY 135 (522)
Q Consensus 57 ~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr-~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 135 (522)
+|++.++.+++.+.+.....+..+++|+++|| +||||+++ .+.+++
T Consensus 45 lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~---------------------------------~g~~~~ 91 (489)
T PRK10207 45 LGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIV---------------------------------LGAIVL 91 (489)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHH---------------------------------HHHHHH
Confidence 37899999999999998889999999999999 99999999 999999
Q ss_pred HHHHHHHhhhhhhHH-HHHHHHHHHhhhhhhhccccccccccccccccccccCCc--c-hhHHHHHHHHHHHHHHHHHHH
Q 047115 136 SNHCSIGGAAFNIYM-LILGCVLLGVGIGFTSQSIQRFNQFAYMILLSSNFETTR--L-SHIDFLLQISICYLILSANLL 211 (522)
Q Consensus 136 ~~~~~~~~~a~~~~~-l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~--~-g~~~~~~~~~~~lG~~~~~~~ 211 (522)
++++++++++.+... ++++|+++|+|.|...+...++ +.| .+|++ | +++.+++..+.++|..+||.+
T Consensus 92 ~~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~~~~~l--------i~~-~~p~~~~~~~~~~~~~~~~~nig~~~g~~l 162 (489)
T PRK10207 92 AIGYFMTGMSLLKPDLIFIALGTIAVGNGLFKANPASL--------LSK-CYPPKDPRLDGAFTLFYMSINIGSLISLSL 162 (489)
T ss_pred HHHHHHHHHhccchhHHHHHHHHHHhccccccCCHHHH--------HHH-hcCCCchhhhcchhHHHHHHHHHHHHHHHH
Confidence 999999999876554 5589999999999999998888 999 77665 4 778999999999999999999
Q ss_pred HhhhhccCCCCchHHHHHhhHHHHHHHHHHhcccCCChHHHHHhCCC-HHHHHHHH-------------HHHcCCcchHH
Q 047115 212 NYGTQKIKGSWGWRISLAMAAVPASILTIGSLFLPETPNSIIQRNKD-HQKAEEIL-------------QIVRNTTDVKA 277 (522)
Q Consensus 212 ~~~l~~~~~~~gwr~~f~i~~~~~~~~~~~~~~lpesp~~~~~~~~~-~~~~~~~~-------------~~~~~~~~~~~ 277 (522)
++.+.+.. |||+.|++.++..++.++.....++..+....+.++ +.+..... .......+...
T Consensus 163 ~g~l~~~~---gw~~~F~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 239 (489)
T PRK10207 163 APVIADKF---GYSVTYNLCGAGLIIALLVYFACRGMVKDIGSEPDHKPMSFSKLLLVLLGSVVMIFVCAWLMHNVEVAN 239 (489)
T ss_pred HHHHHHhh---ChHHHHHHHHHHHHHHHHHHHHcchhhcccCCCCCccchhhhhHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 99998654 899999987554444443333333221100000000 00100000 00000000000
Q ss_pred HH-HH---------HHHHHHhhccccchhHHHHHHHH---HHhhhccchhhHhcHHHHHHH-c-----CCCCchhhHHHh
Q 047115 278 EL-DD---------IIRASSKIIHRIYRPQLVMAILI---PFQQVTRVNVISFNAPVLFMT-I-----KVRKSTSLLMSA 338 (522)
Q Consensus 278 ~~-~~---------~~~~~~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-~-----g~~~~~~~~~~~ 338 (522)
-. .. ..+.. + .++..+++.+....+ ....+..+.......+.+.++ . |+.... . ...
T Consensus 240 ~~~~~~~~i~~~~f~~~~~-~-~~~~~r~r~~~~~~l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~-~-~~~ 315 (489)
T PRK10207 240 LVLIVLSIVVTIIFFREAF-K-LDKTGRNKMFVAFVLMLEAVVFYILYAQMPTSLNFFAINNVHHEILGFSINP-V-SFQ 315 (489)
T ss_pred HHHHHHHHHHHHHHHHHHh-c-CCHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHhccccccceEECH-H-HHH
Confidence 00 00 00000 0 011112222222111 111122222222334444432 2 222221 2 244
Q ss_pred HHHHHHHHHHHHhHHHHhhhccchH-------HHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcchhhHHHHHHHHHHHHh
Q 047115 339 VVPDGIGTVSTILPMILADKLGRTV-------LFLLGGIQILVSQVMIRSIMAAQLGDHGGFNIGYAYLILFLICVYKAG 411 (522)
Q Consensus 339 ~~~~~~~~~~~~~~g~l~dr~g~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (522)
....+..++..++.+++.||+++|+ .+.++.++.+++.+.+...... ..+.+ .....++.+....+.+.+
T Consensus 316 ~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~-~~~~~--~~~s~~~~i~~~~l~g~G 392 (489)
T PRK10207 316 ALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMW-FADAQ--GLTSPWFIVLVYLFQSLG 392 (489)
T ss_pred hHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHh-hcCCC--CccCHHHHHHHHHHHHHH
Confidence 4455666677788899999999886 3556666666665444321110 11110 112234444445555555
Q ss_pred hhccccccccccccccCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH---------hcc--chhhHHHHHHHHHHHHH
Q 047115 412 FAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLVAQTFLAMLC---------HFK--AGVFFCFGGWVAFMTTF 480 (522)
Q Consensus 412 ~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~---------~~g--~~~~~~~~~~~~i~~~~ 480 (522)
.... .+.....+.+..|++.++.++|+.+....+++.++..+...... ..+ ...|..++....+.+++
T Consensus 393 e~~~-~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~v~ 471 (489)
T PRK10207 393 ELFI-SALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFTAVPDNITDPLETLPVYTNVFGKIGLVTLGVAVV 471 (489)
T ss_pred HHHH-hHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHH
Confidence 5443 44445666788999999999999999999999888877654421 011 23455555555555555
Q ss_pred HHhh
Q 047115 481 VHFF 484 (522)
Q Consensus 481 ~~~~ 484 (522)
.+..
T Consensus 472 ~~~~ 475 (489)
T PRK10207 472 MALM 475 (489)
T ss_pred HHHH
Confidence 4443
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.9e-20 Score=179.19 Aligned_cols=388 Identities=12% Similarity=-0.024 Sum_probs=254.4
Q ss_pred HHHHHHHHHhhhhhcchhhccccccHHHHHHhhh-------hhh--h-----------------------cccCCCCCCC
Q 047115 8 SCIVAATSGLIFGYDIGVSGGVTLMEPFLKKCFL-------EVY--K-----------------------KMKEDPKISN 55 (522)
Q Consensus 8 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-------~~~--~-----------------------~~~~~p~i~~ 55 (522)
+..+.+++.+.+.+..+++.+.. |.++.+... ... + ....+|+...
T Consensus 22 ilviv~ialllDnmL~~vivPii--P~~L~d~~~~p~~~~~~~~is~~~~~~~~~~~~~~~~~~~~~t~a~~~~~~~~~~ 99 (464)
T KOG3764|consen 22 ILVIVSIALLLDNMLYTVIVPII--PGYLYDIQAEPTIIQPFFPISTAPIPPGSMSSFSSLNISTESTNASAGKSPAEAI 99 (464)
T ss_pred EEEEEehhhhccCccceeeeccC--ccHHHHhccCCccCccccccccCCCCCccccceecccCCccccccccccCchhcc
Confidence 34455667788888888887776 777776642 000 0 0001223345
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhhhh
Q 047115 56 YGKFDSQLLAAFTSSLYIAGLIAFLFASKVTRAFGRKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCCY 135 (522)
Q Consensus 56 ~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 135 (522)
+.+-++++.|++..+..+.+.+..++.|.+.||+|+|-.++ +|.+..
T Consensus 100 ~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~---------------------------------~Gl~vm 146 (464)
T KOG3764|consen 100 SLDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMV---------------------------------AGLFVM 146 (464)
T ss_pred CccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHH---------------------------------HHHHHH
Confidence 55667889999999999999999999999999999999999 999999
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHhhhhhhhccccccccccccccccccccCCcc--hhHHHHHHHHHHHHHHHHHHHHh
Q 047115 136 SNHCSIGGAAFNIYMLILGCVLLGVGIGFTSQSIQRFNQFAYMILLSSNFETTRL--SHIDFLLQISICYLILSANLLNY 213 (522)
Q Consensus 136 ~~~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~--g~~~~~~~~~~~lG~~~~~~~~~ 213 (522)
..++++.++.+++++++++|.+||+|.+...++..++ ++| .+|+++ ++++|+...+.++|.++||..|+
T Consensus 147 f~sTilFafg~sy~~l~vAR~LQgvgsA~~~tsglam--------lAd-~f~~d~er~~vmGialgfislG~lvgPpfGG 217 (464)
T KOG3764|consen 147 FLSTILFAFGNSYPMLFVARSLQGVGSAFADTSGLAM--------LAD-VFPEDNERGSVMGIALGFISLGVLVGPPFGG 217 (464)
T ss_pred HHHHHHHHHcchhHHHHHHHHHhhhhHHHHHhhhHHH--------HHH-HcccchhhhHHHHHHHHHHhccceecCCccc
Confidence 9999999999999999999999999999999999999 999 777665 99999999999999999999999
Q ss_pred hhhccCCCCchHHHHHhhHHHHHHHHHHhcccCCChHHHHHhCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHHhhcccc
Q 047115 214 GTQKIKGSWGWRISLAMAAVPASILTIGSLFLPETPNSIIQRNKDHQKAEEILQIVRNTTDVKAELDDIIRASSKIIHRI 293 (522)
Q Consensus 214 ~l~~~~~~~gwr~~f~i~~~~~~~~~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 293 (522)
.+.+.. |.+.+|.+.++.++.-..+.+++-|..+ ++++..++.. +.. ++++++
T Consensus 218 ilYe~~---Gk~aPFlVL~~v~Lld~~L~l~vi~p~~---~~~~~~~~~~--------------~~~-------~Ll~dP 270 (464)
T KOG3764|consen 218 ILYEFA---GKSAPFLVLAIVLLLDGALQLLVIEPTE---MDPDSTEQGT--------------PMW-------SLLMDP 270 (464)
T ss_pred chHhhc---CCcCcHHHHHHHHHHHHHHHHheeCccc---cCccccccCc--------------cHH-------HHHhCc
Confidence 999776 7999999988877776666555433211 0110000000 000 222221
Q ss_pred chhHHHHHHHHH-HhhhccchhhHhcHHHHH-HHcCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhhccchHHHHH--HH
Q 047115 294 YRPQLVMAILIP-FQQVTRVNVISFNAPVLF-MTIKVRKSTSLLMSAVVPDGIGTVSTILPMILADKLGRTVLFLL--GG 369 (522)
Q Consensus 294 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~--~~ 369 (522)
.+....... +++. +....---.+.+. ++..-+.-+.+ +.+....+...++..+.|.+.||++..+.+.. +.
T Consensus 271 ---~I~~~agai~~~n~-~lafLePtlslwm~e~m~~p~w~~G-~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl 345 (464)
T KOG3764|consen 271 ---YILLIAGAITFSNS-SLAFLEPTLSLWMLETMFTPGWEVG-LAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGL 345 (464)
T ss_pred ---hHhhhhcchhhccc-hHHHhCcccHHHHHHhccCCCccee-eeecccccchhccCchHHHHHHhcCchhHHHHHHHH
Confidence 222111111 2221 1122222223323 45554444677 88888999999999999999999995544333 22
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCCCcchhhHHHHHHHHHHHHhhhccccccccccccccCchh---hhhHHHHHHHHHHHH
Q 047115 370 IQILVSQVMIRSIMAAQLGDHGGFNIGYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFPLE---IRSAGQSITVAVDLL 446 (522)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~---~r~~~~g~~~~~~~~ 446 (522)
+..+.+.....+.. .....|......++..........|..... .+....+ ..|...++......+
T Consensus 346 ~~~G~~~~~iP~~~----------~~~~L~vp~~~l~~~i~~~dasl~P~l~~l-vd~rh~s~~~vYGsVyaIad~a~sl 414 (464)
T KOG3764|consen 346 ATVGVSSGPIPFAT----------SIAQLWVPNFGLGFGIGLADASLIPTLGYL-VDPRHVSGFNVYGSVYAIADAAFSL 414 (464)
T ss_pred HHHHHHhchhHhhh----------hHHHHhhhhHHHHHHHHHHHHHHhhhhHHh-cchhhccccceeeeHHHHHHHHHHH
Confidence 32332222222221 111222333333333333333333332222 2333233 567888999999999
Q ss_pred HHHHHHHHHHHHHHhcc-chhhHHHHHHHHHHHHHHH
Q 047115 447 FTFLVAQTFLAMLCHFK-AGVFFCFGGWVAFMTTFVH 482 (522)
Q Consensus 447 ~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~i~~~~~~ 482 (522)
+.+++|.+.|.+.+..| .+...+.+....+-+-++.
T Consensus 415 a~a~GP~~gg~iv~~iGF~wl~~iig~~n~iyapvl~ 451 (464)
T KOG3764|consen 415 AYAIGPTFGGSLVEAIGFEWLMTIIGILNLIYAPVLL 451 (464)
T ss_pred hhhccccccchheeehhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988 3445555555555554443
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.82 E-value=2e-17 Score=175.07 Aligned_cols=333 Identities=14% Similarity=0.119 Sum_probs=196.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhhhhHHHHH
Q 047115 61 SQLLAAFTSSLYIAGLIAFLFASKVTRAFGRKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCCYSNHCS 140 (522)
Q Consensus 61 ~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 140 (522)
.....|+.+...++.+++.++.|+++|.||||.+++ .+.++..+|++
T Consensus 77 ~~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i---------------------------------~g~~l~vvG~I 123 (599)
T PF06609_consen 77 SDNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFI---------------------------------IGSLLGVVGSI 123 (599)
T ss_pred CccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHH---------------------------------HHHHHHHhHHH
Confidence 456779999999999999999999999999999999 99999999999
Q ss_pred HHhhhhhhHHHHHHHHHHHhhhhhhhccccccccccccccccccccCCcc-hhHHHHHHHHHHHHHHHHHHHHhhhhccC
Q 047115 141 IGGAAFNIYMLILGCVLLGVGIGFTSQSIQRFNQFAYMILLSSNFETTRL-SHIDFLLQISICYLILSANLLNYGTQKIK 219 (522)
Q Consensus 141 ~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~-g~~~~~~~~~~~lG~~~~~~~~~~l~~~~ 219 (522)
+++.++|...++.+-.+.|+|.|.... .... ++| ..|.|. +...++...........++.++..+..
T Consensus 124 v~atA~~~~~~iag~~l~GvgaG~~~~-~~~~--------isE-l~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~-- 191 (599)
T PF06609_consen 124 VCATAQNMNTFIAGMVLYGVGAGVQEL-AALA--------ISE-LVPNKWRGLGLAIASIPFIITTWISPLIAQLFAA-- 191 (599)
T ss_pred HhhcCCcHHHHHHHHHHHHHhhHHHHH-HHHH--------HHH-hcccchhhhHhHHHHHHHHhhhcccHHHHHHhcc--
Confidence 999999999999999999999886653 3444 799 888777 666665555544444556666655442
Q ss_pred CCCchHHHHHhhHHHHHHHHHHh--cccCCChHHHHHhCCCHHHHHHHHHHH---------------------cCCc---
Q 047115 220 GSWGWRISLAMAAVPASILTIGS--LFLPETPNSIIQRNKDHQKAEEILQIV---------------------RNTT--- 273 (522)
Q Consensus 220 ~~~gwr~~f~i~~~~~~~~~~~~--~~lpesp~~~~~~~~~~~~~~~~~~~~---------------------~~~~--- 273 (522)
+.+|||.|++.++...+.++.. ++.|.+.+ ..+++ +...++.++++ .+..
T Consensus 192 -~~~WRw~~~~~~i~~~i~~vl~~~fY~PP~~~--~~~~~-~~s~~~~l~~lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~ 267 (599)
T PF06609_consen 192 -HSGWRWIFYIFIIWSGIALVLIFFFYFPPPRA--QLHGR-KLSKREQLKELDWIGIFLFIAGLALFLLGLSWGGYPYYP 267 (599)
T ss_pred -CCCcchHHHHHHHHHHHHHHHHHHHhCCCchh--hhccc-cCcHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCCCC
Confidence 2489999999877655543332 23343321 11221 11111112211 0110
Q ss_pred -chHHHHHHH------------HHHH----H-----hhccccchhHHHHHHH-HHHhhhccchhhHhcHHHHHH-HcCCC
Q 047115 274 -DVKAELDDI------------IRAS----S-----KIIHRIYRPQLVMAIL-IPFQQVTRVNVISFNAPVLFM-TIKVR 329 (522)
Q Consensus 274 -~~~~~~~~~------------~~~~----~-----~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~g~~ 329 (522)
+...-+..+ .+.. + +++++ ++.+.+.+ +.+.....++....+-|.... -++-+
T Consensus 268 W~Sa~VIa~lviG~~~Lv~F~~wE~~~~~~~Pl~P~~Lf~~---~r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d 344 (599)
T PF06609_consen 268 WKSAHVIAPLVIGFVLLVAFVVWEWFGAPKDPLFPHRLFKD---RRGFAALLVISFISGMNFFSVNILWPQQVVNVFGSD 344 (599)
T ss_pred CCCccchhhHHHHHHHHHHHHHhhhhccCCCCcCCHHHhcc---chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC
Confidence 000000000 0000 0 23322 12222222 223322223333344444433 23333
Q ss_pred C---chhhHHHhHHHHHHHHHHHHhHHHHhhhccchHHH-HHHHHHHHHHHHHHHHHHHHhhCCCCCCcchhhHHHHHHH
Q 047115 330 K---STSLLMSAVVPDGIGTVSTILPMILADKLGRTVLF-LLGGIQILVSQVMIRSIMAAQLGDHGGFNIGYAYLILFLI 405 (522)
Q Consensus 330 ~---~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (522)
. ...+ +.....+.+..++.++.+.+..+++|-|.. +.+...+.+...++.... +.+....+ ...
T Consensus 345 ~~~~~~~~-~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~ta~~Gama~~~--------~~n~~~~i---~~~ 412 (599)
T PF06609_consen 345 PISITEIG-WISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLMTAFCGAMAAVR--------PDNKNAAI---AFL 412 (599)
T ss_pred Ccccceee-hhhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHcc--------CCCcchHH---HHH
Confidence 3 2345 667778888888999999999888765554 455444444333333321 11222222 222
Q ss_pred HHHHHhhhccccccccccccccCchhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 047115 406 CVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLVAQTFLAM 458 (522)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~ 458 (522)
.+.+.+.+....+ ......-..|++.-+++.|+..++..+|+.++..++..+
T Consensus 413 ~l~g~giG~~~~~-~~~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy~~I 464 (599)
T PF06609_consen 413 VLAGFGIGGILVP-AIVIAQLIVPDEDIGTATGLTGSIRSIGGSIGYAIYNAI 464 (599)
T ss_pred HHHHHhHHHHHHH-HHHeeEeeeCchHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 2222333322222 234445578899999999999999999888888776543
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.7e-17 Score=171.63 Aligned_cols=379 Identities=10% Similarity=0.022 Sum_probs=235.3
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHhhh----hhccccccccccccCcccchhhhhhhhhhhhhhhhcccccccc-hh
Q 047115 58 KFDSQLLAAFTSSLYIAGLIAFLFASKVTR----AFGRKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSC-CS 132 (522)
Q Consensus 58 ~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d----r~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 132 (522)
|++..+.+++..+..+...+.+|+.|+++| |+||||.++ . +.
T Consensus 35 g~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~i---------------------------------l~g~ 81 (477)
T TIGR01301 35 GIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFI---------------------------------AAGA 81 (477)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHH---------------------------------HHHH
Confidence 679999999999999999999999999999 599999988 5 46
Q ss_pred hhhHHHHHHHhhhhhhHH-----------------HHHHHHHHHhhhhhhhccccccccccccccccccccCCc--c-hh
Q 047115 133 CCYSNHCSIGGAAFNIYM-----------------LILGCVLLGVGIGFTSQSIQRFNQFAYMILLSSNFETTR--L-SH 192 (522)
Q Consensus 133 ~l~~~~~~~~~~a~~~~~-----------------l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~--~-g~ 192 (522)
....++.++.+++++.+. ++++-.+..++.....+...++ ++| ..|++ + +.
T Consensus 82 ~~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rAL--------iaD-l~p~~~~~~~~ 152 (477)
T TIGR01301 82 ALVAFAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAF--------LAD-LTGGDARRTRI 152 (477)
T ss_pred HHHHHHHHHHHhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHh--------ccc-ccCchhHHHHH
Confidence 666666667777665432 2223333444666655555566 999 88876 3 67
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhh--ccC--------C--CCchHHHHHhhHHHHHHHH-HHhcccCCChHHHHHhCCCH
Q 047115 193 IDFLLQISICYLILSANLLNYGTQ--KIK--------G--SWGWRISLAMAAVPASILT-IGSLFLPETPNSIIQRNKDH 259 (522)
Q Consensus 193 ~~~~~~~~~~lG~~~~~~~~~~l~--~~~--------~--~~gwr~~f~i~~~~~~~~~-~~~~~lpesp~~~~~~~~~~ 259 (522)
+.++.+.+.++|.++|+.+++... +.. + ..+.|..|++.++..++.. +..+..+|.|.. ++++ .
T Consensus 153 a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~--~~~~-~ 229 (477)
T TIGR01301 153 ANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLI--GSDD-F 229 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCC--cccc-c
Confidence 999999999999999999987641 110 0 1267899999877666644 455668887521 1111 1
Q ss_pred HHHHHHHHHHcCCcchHHHHHHHHHHHHhhccccchhHHHHHHHHHHhhhccchhhHhcHHHHHHH--cCCCCc------
Q 047115 260 QKAEEILQIVRNTTDVKAELDDIIRASSKIIHRIYRPQLVMAILIPFQQVTRVNVISFNAPVLFMT--IKVRKS------ 331 (522)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~------ 331 (522)
++ +..++.+ +.+.+..++++.+..++ .-+.+...+...+..+.+...+..|.+.+..+ ++-++.
T Consensus 230 ~~--~~~~~~~-~~~~~~~~~~i~~~~~~-----mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~ 301 (477)
T TIGR01301 230 IN--SEAAPPS-KHGEEAFFGELFGAFKY-----LPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYD 301 (477)
T ss_pred hh--hhccccc-ccchhhhHHHHHHHHHH-----CCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHH
Confidence 00 0000000 00111122222222111 12233333334466666666677777777643 222211
Q ss_pred hh---hHHHhHHHHHHHHHHHHhHHHHhhhccc-hHHHHHHHHHHHHHHHHHHHHHHHhhC--CC----C--CCcchhhH
Q 047115 332 TS---LLMSAVVPDGIGTVSTILPMILADKLGR-TVLFLLGGIQILVSQVMIRSIMAAQLG--DH----G--GFNIGYAY 399 (522)
Q Consensus 332 ~~---~~~~~~~~~~~~~~~~~~~g~l~dr~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~----~--~~~~~~~~ 399 (522)
+. +.+......+...+.+++..++.+|+|+ |++..++.++.++++....+......+ .. . ..+....+
T Consensus 302 ~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (477)
T TIGR01301 302 DGVRAGAFGLMLNSVVLGITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKA 381 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHH
Confidence 11 3245556667767778888899999985 677677877777777766654321100 00 0 00111124
Q ss_pred HHHHHHHHHHHhhhccccccccccccccCch--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---chhhHHHHHHH
Q 047115 400 LILFLICVYKAGFAFSRGPLGWLVPSEIFPL--EIRSAGQSITVAVDLLFTFLVAQTFLAMLCHFK---AGVFFCFGGWV 474 (522)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~--~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g---~~~~~~~~~~~ 474 (522)
..++.....+..++. ...++++++++..|+ +..|..+|+.|.+-.+.+.+.+...|.+.+..+ ...+.+-++..
T Consensus 382 ~~l~~~~~~Gi~~A~-~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~ 460 (477)
T TIGR01301 382 SALIVFAILGIPLAI-TYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAA 460 (477)
T ss_pred HHHHHHHHhhHHHHH-HHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHH
Confidence 445555555555543 345778888888885 455999999999999999999988888666665 33455555556
Q ss_pred HHHHHHHHhhccCCCC
Q 047115 475 AFMTTFVHFFLPETKY 490 (522)
Q Consensus 475 ~i~~~~~~~~~~~~~~ 490 (522)
++.++..++.+|+++.
T Consensus 461 ~~aa~~~~~~~~~~~~ 476 (477)
T TIGR01301 461 FVSGLLALILLPRPRV 476 (477)
T ss_pred HHHHHHHHHhCCCCCC
Confidence 6667777788887653
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.4e-17 Score=171.29 Aligned_cols=327 Identities=14% Similarity=0.063 Sum_probs=207.5
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhcc-ccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhhhhH
Q 047115 58 KFDSQLLAAFTSSLYIAGLIAFLFASKVTRAFGR-KASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCCYS 136 (522)
Q Consensus 58 ~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Gr-k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 136 (522)
|+|..|+|.+.+...+...++++++|.++||+++ ||.+. ++.++.+
T Consensus 33 G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~---------------------------------~~~l~~~ 79 (400)
T PF03825_consen 33 GFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILA---------------------------------LLSLLSA 79 (400)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHH---------------------------------HHHHHHH
Confidence 7899999999999999999999999999999864 66776 6777777
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHhhhhhhhccccccccccccccccccccC--Ccc-hhHHHHHHHHHHHHHHHHHHHHh
Q 047115 137 NHCSIGGAAFNIYMLILGCVLLGVGIGFTSQSIQRFNQFAYMILLSSNFET--TRL-SHIDFLLQISICYLILSANLLNY 213 (522)
Q Consensus 137 ~~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~i~~~~~~--~~~-g~~~~~~~~~~~lG~~~~~~~~~ 213 (522)
+........++++.+++.-++..+......|...++ ..+ ... +++ |+.-.+=..++.++... .+.
T Consensus 80 ~~~~~~~~~~~f~~~~~~~~l~~~~~~p~~pl~dsi--------~~~-~~~~~~~~YG~iRlwGSiGf~~~~~~---~~~ 147 (400)
T PF03825_consen 80 LALLLLAFSSSFWWLFVIMLLFSFFFSPTMPLSDSI--------ALS-YLGDRGKDYGRIRLWGSIGFIVAALA---FGG 147 (400)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHccHHHHHHHH--------HHH-HcccccCCCCcchhhhhHHHHHHHHH---HHH
Confidence 777777778889888888888888777777777776 555 333 223 55444434444333222 111
Q ss_pred hhhccCCCCchHHHHHhhHHHHHHHHHHhcccCCChHHHHHhCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHHhhcccc
Q 047115 214 GTQKIKGSWGWRISLAMAAVPASILTIGSLFLPETPNSIIQRNKDHQKAEEILQIVRNTTDVKAELDDIIRASSKIIHRI 293 (522)
Q Consensus 214 ~l~~~~~~~gwr~~f~i~~~~~~~~~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 293 (522)
.+....+..+..+.+++.+...++.....+.+|+.|.. ++. +++.++. .. ++ ..++++++
T Consensus 148 ~~~~~~~~~~~~~~~~i~~~~~~ll~~~~l~lp~~~~~---~~~-~~~~~~~---------~~---~~----~~~llk~~ 207 (400)
T PF03825_consen 148 LLGGYLGISGTSLIFYIAAILSLLLAGFALFLPKTPPK---RSA-KESVKKL---------LG---LD----ALKLLKNP 207 (400)
T ss_pred HHHhhhccccccHHHHHHHHHHHHHHHHHHhCCCCccc---ccc-CCCcccc---------cc---hH----HHHHhcCc
Confidence 12211111123345566555554544455667887621 111 0000000 00 00 00344443
Q ss_pred chhHHHHHHHHHHhhhccchhhHhcHHHHHHHcC-CCCchhhHHHhHHHHHHHHHHHHhHHHHhhhccchHHHHHHHHHH
Q 047115 294 YRPQLVMAILIPFQQVTRVNVISFNAPVLFMTIK-VRKSTSLLMSAVVPDGIGTVSTILPMILADKLGRTVLFLLGGIQI 372 (522)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~ 372 (522)
.....++.. +...........|.+.++++.| .+....+ ...+...+..++.-...+++..|+|.|+++.++....
T Consensus 208 ~~~~Fll~~---~l~~~~~~~~~~f~~~yl~~~gg~~~~~~g-~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~ 283 (400)
T PF03825_consen 208 RFLVFLLAA---FLIGISHAAYYTFFSIYLQELGGYSGSTIG-ILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAY 283 (400)
T ss_pred cHHHHHHHH---HHHHHHHHHHHHHHHHHHHHcccchhhHHH-HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 332222222 2222233445677788888887 7777777 6777888899999999999999999999999888887
Q ss_pred HHHHHHHHHHHHHhhCCCCCCcchhhHHHHHH-HHHHHHhhhccccccccccccccCchhhhhHHHHHHHHH-HHHHHHH
Q 047115 373 LVSQVMIRSIMAAQLGDHGGFNIGYAYLILFL-ICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAV-DLLFTFL 450 (522)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~-~~~~~~~ 450 (522)
.+=..++.... .+.+..+....+ ..+.+..++..+. ....++.+..|++.|++++++.++. ..++..+
T Consensus 284 ~vR~~l~a~~~---------~~~~~~~~~~~l~q~lhG~tf~~~~~-a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~i 353 (400)
T PF03825_consen 284 AVRWLLYAYFS---------DPWPFIVALQLLGQLLHGLTFGLFHA-ASVRYIDRIAPPELRATAQGLYSALSFGLGGAI 353 (400)
T ss_pred HHHHHHHHHhc---------CCcHHHHHHHHHHHhhhhHHHHHHHH-HHHHHHHHhCCccchHHHHHHHHHHHhhHHHHH
Confidence 77766666541 011111111111 2234555554433 2346678999999999999998876 5689999
Q ss_pred HHHHHHHHHHhcc
Q 047115 451 VAQTFLAMLCHFK 463 (522)
Q Consensus 451 ~~~~~~~~~~~~g 463 (522)
++.+.|.+.|+.+
T Consensus 354 G~~igG~l~~~~g 366 (400)
T PF03825_consen 354 GSLIGGWLYDAFG 366 (400)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999999876
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.1e-17 Score=176.52 Aligned_cols=348 Identities=11% Similarity=-0.046 Sum_probs=214.1
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhc-----cccccccccccCcccchhhhhhhhhhhhhhhhcccccccchh
Q 047115 58 KFDSQLLAAFTSSLYIAGLIAFLFASKVTRAFG-----RKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCS 132 (522)
Q Consensus 58 ~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~G-----rk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (522)
|++.++.+...+...+...+-.+ +|+++||++ ||+.++ ++.
T Consensus 57 g~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~---------------------------------~~~ 102 (468)
T TIGR00788 57 GLDGARYQRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLV---------------------------------LSG 102 (468)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHH---------------------------------HHH
Confidence 88999999999999999999766 999999997 666666 555
Q ss_pred hhh-HHHHHHHhhhhhhH-HHHHHHHHHHhhhhhhhccccccccccccccccccccCCcchh---HHHHHHHHHHHHHHH
Q 047115 133 CCY-SNHCSIGGAAFNIY-MLILGCVLLGVGIGFTSQSIQRFNQFAYMILLSSNFETTRLSH---IDFLLQISICYLILS 207 (522)
Q Consensus 133 ~l~-~~~~~~~~~a~~~~-~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~g~---~~~~~~~~~~lG~~~ 207 (522)
++. ++.....+..++.. ...+.+++.+++.+...+...++ ..| ..+++++. ..+.......+|.++
T Consensus 103 ~l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~a~~dv~~da~--------~~e-~~~~~~~~~~~~~s~~~~~~~~G~~v 173 (468)
T TIGR00788 103 LLGSAILYGLLPGKVSSAKVAAAFIFLAALAKALYDVLVDSL--------YSE-RIRESPSAGPSLVSWMWGASATGGLI 173 (468)
T ss_pred HHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhHHHH--------Hhh-hhhcCCCcCCCeeeHHHHHHHHHHHH
Confidence 554 23333333334543 44448899999999999999999 999 77733233 333444445689999
Q ss_pred HHHHHhhhhccCCCCchHHHHHhhHHHHHHHHHHhcccCCChHHHHHhCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHH
Q 047115 208 ANLLNYGTQKIKGSWGWRISLAMAAVPASILTIGSLFLPETPNSIIQRNKDHQKAEEILQIVRNTTDVKAELDDIIRASS 287 (522)
Q Consensus 208 ~~~~~~~l~~~~~~~gwr~~f~i~~~~~~~~~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (522)
++.+++.+.+.. +||..|++.++..++......++||+++....+.+ ++........ +.+.....++..+...
T Consensus 174 g~~l~G~l~~~~---~~~~~f~~~a~l~ll~~~~~~~~~E~~~~~~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~~l~ 246 (468)
T TIGR00788 174 SSLLGGPLLDKT---LTRILFLITAALLLLQLFVSNLSKERRAFVRPRIG--TYLEMNMALL--TLGVLANVKVQILGLR 246 (468)
T ss_pred HHHHHHHHHHhc---CcchHHHHHHHHHHHHHHHHHhccccccccccccc--ccchhhhhhh--hhhHHHHHHHHHHHHH
Confidence 999998887543 79999988777666665666778886411000000 1000000000 0000001111111111
Q ss_pred hhccccchhHHHHHHHH-HHhhhccchhhHhcHHHHHHHcCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhhccchHHHH
Q 047115 288 KIIHRIYRPQLVMAILI-PFQQVTRVNVISFNAPVLFMTIKVRKSTSLLMSAVVPDGIGTVSTILPMILADKLGRTVLFL 366 (522)
Q Consensus 288 ~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~ 366 (522)
+.++++..++.....++ +.......+...++.+ +..|+++...+ ......+++.+++..+.+++.+|++.|+.+.
T Consensus 247 ~~l~~~~i~~~l~fifl~~~~~~~~~~~~f~~~~---~~lG~s~~~~G-~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~ 322 (468)
T TIGR00788 247 GAIQLLEIAKPLIFIFLSYANLPGASGSVFCATT---QCLPGGPSFSG-MSKVVGNLGSLCGVGGYDRFLKTFPYRLLFG 322 (468)
T ss_pred HHHhcHHHHHHHHHHHHHHhhcCCCCceeEEEEc---ccCCCCcchhh-hHHHHHHHHHHHHHHHHHHHHhhCCHHHHHH
Confidence 22333222222222222 2111111111111222 45799999999 8888899999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCCCcchhhHHHHHHHHHHHHhhhccccccccccccccCchhhhhHHHHHHHHHHHH
Q 047115 367 LGGIQILVSQVMIRSIMAAQLGDHGGFNIGYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLL 446 (522)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~ 446 (522)
++.++..++............... .....+.......+...+.+....+. ..+..+..|++.+|+.+++.+.+.++
T Consensus 323 ~~~~l~~~~~~~~~~l~~~~~~~~---gi~~~~~~~~~~~l~~~~~g~~~~~~-~~~~~~~~p~~~egt~~al~~s~~~l 398 (468)
T TIGR00788 323 VTTLLYTLSSLFDLILVKRWNLAF---GISDEVFVLGDSIIAEVLAQLKFMPF-LVLLARLCPSGCESSVFALLASILHL 398 (468)
T ss_pred HHHHHHHHHHhCceeeeecccccc---CCCCeeeeeehhHHHHHHHHHHHccH-HHHHHHhCCCCceehHHHHHHHHHHH
Confidence 887777766544321110000000 00112222233334444444455555 46668999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcc
Q 047115 447 FTFLVAQTFLAMLCHFK 463 (522)
Q Consensus 447 ~~~~~~~~~~~~~~~~g 463 (522)
+..+++.+.+.+.++.|
T Consensus 399 g~~v~~~~gg~l~~~~g 415 (468)
T TIGR00788 399 GSSVSGFLGVLLMETIG 415 (468)
T ss_pred HHHHHHHHHHHHHHHcC
Confidence 99999999999998877
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.77 E-value=1e-16 Score=170.65 Aligned_cols=345 Identities=11% Similarity=0.046 Sum_probs=199.0
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHhhhh-hccccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhhhhH
Q 047115 58 KFDSQLLAAFTSSLYIAGLIAFLFASKVTRA-FGRKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCCYS 136 (522)
Q Consensus 58 ~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr-~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 136 (522)
|++.++.+++.+.+........+++|+++|| +|||+.++ .+.++.+
T Consensus 53 g~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~---------------------------------~g~~~~~ 99 (500)
T PRK09584 53 GMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIM---------------------------------LGAIVLA 99 (500)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHH---------------------------------HHHHHHH
Confidence 7788888888888776666777899999999 59999999 9999999
Q ss_pred HHHHHHhhhh-hhHHHHHHHHHHHhhhhhhhccccccccccccccccccccCCcc---hhHHHHHHHHHHHHHHHHHHHH
Q 047115 137 NHCSIGGAAF-NIYMLILGCVLLGVGIGFTSQSIQRFNQFAYMILLSSNFETTRL---SHIDFLLQISICYLILSANLLN 212 (522)
Q Consensus 137 ~~~~~~~~a~-~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~---g~~~~~~~~~~~lG~~~~~~~~ 212 (522)
++..+++++. +.+.+.++|+++|++.|...+....+ +.| ++|+++ +.+.++++.+.++|..++|.++
T Consensus 100 ig~~l~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~l--------~~~-~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~ 170 (500)
T PRK09584 100 IGYALVAWSGHDAGIVYMGMATIAVGNGLFKANPSSL--------LST-CYEKDDPRLDGAFTMYYMSINIGSFFSMLAT 170 (500)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHhhhcccCCHHHH--------HHH-hcCCCchhhhhcchHHHHHHHHHHHHHHHHH
Confidence 9999888874 55677789999999999988888888 999 776543 4578888999999999999999
Q ss_pred hhhhccCCCCchHHHHHhhHHHHHHHHHHh----cccCCChHHHHHhCCCHHHHHHHH------------HH-HcCCcch
Q 047115 213 YGTQKIKGSWGWRISLAMAAVPASILTIGS----LFLPETPNSIIQRNKDHQKAEEIL------------QI-VRNTTDV 275 (522)
Q Consensus 213 ~~l~~~~~~~gwr~~f~i~~~~~~~~~~~~----~~lpesp~~~~~~~~~~~~~~~~~------------~~-~~~~~~~ 275 (522)
+.+.+. .|||+.|.+.++..++.++.. ..++|.++. .++++ .+..+... .. ..+.+..
T Consensus 171 g~l~~~---~g~~~~F~i~~i~~~i~~i~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (500)
T PRK09584 171 PWLAAK---YGWSVAFALSVVGMLITVVNFAFCQRWVKQYGSK-PDFEP-INYRKLLLTIVGVVALIAIATWLLHNQEIA 245 (500)
T ss_pred HHHHHh---hCHHHHHHHHHHHHHHHHHHHHHhHHHhccCCCC-CCccc-cchhhHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 988754 489999998775444433222 223332110 00000 01000000 00 0111000
Q ss_pred HHHH-----HHHHHHHHh--hccccchhHHHHHHHHHHhhhccchhhHhcHHHHHHH---cCCCCc------hhhHHHhH
Q 047115 276 KAEL-----DDIIRASSK--IIHRIYRPQLVMAILIPFQQVTRVNVISFNAPVLFMT---IKVRKS------TSLLMSAV 339 (522)
Q Consensus 276 ~~~~-----~~~~~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~------~~~~~~~~ 339 (522)
+... ........+ ..++..+++.+..+.+. .....++......|..+.. .+.+.+ ... ...+
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i~~~-~~~s 323 (500)
T PRK09584 246 RMALGVVALGIVVIFGKEAFAMKGAARRKMIVAFILM-LEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIAVEPE-QYQA 323 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH-HHHHHHHHHHHHhccHHHHHHHHhccccccceEECHH-HHHH
Confidence 0000 000000000 01112233333222222 1111112222222333211 111111 122 3444
Q ss_pred HHHHHHHHHHHhH----HHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcchhhHHHHHHHHHHHHhhhcc
Q 047115 340 VPDGIGTVSTILP----MILADKLGRTVLFLLGGIQILVSQVMIRSIMAAQLGDHGGFNIGYAYLILFLICVYKAGFAFS 415 (522)
Q Consensus 340 ~~~~~~~~~~~~~----g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (522)
...+..++..++. +++.||.+..+.+.++.++.+++.+.+....... +.. ..-+.++.+....+...+-. .
T Consensus 324 ~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~--~~~--~~vs~~~~~~~~~l~~~ge~-~ 398 (500)
T PRK09584 324 LNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFA--NDA--GIVSVNWLIASYGLQSIGEL-M 398 (500)
T ss_pred HhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhc--CCC--CccCHHHHHHHHHHHHHHHH-H
Confidence 5555555555554 5556666666777888888888877765543211 110 11223334444444444433 3
Q ss_pred ccccccccccccCchhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 047115 416 RGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLVAQTFL 456 (522)
Q Consensus 416 ~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~ 456 (522)
..|....++.+..|++.||+.+|+......+++.++..+..
T Consensus 399 ~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~ 439 (500)
T PRK09584 399 ISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVAN 439 (500)
T ss_pred HhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666677789999999999999877666666666666554
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.6e-17 Score=171.90 Aligned_cols=334 Identities=13% Similarity=0.019 Sum_probs=191.9
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHhhh----hhccccc-cccccccCcccchhhhhhhhhhhhhhhhcccccccchh
Q 047115 58 KFDSQLLAAFTSSLYIAGLIAFLFASKVTR----AFGRKAS-ILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCS 132 (522)
Q Consensus 58 ~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d----r~Grk~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (522)
|++....|.+..+..+..++..|+.|.++| |+||||. ++ .+.
T Consensus 38 Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il---------------------------------~g~ 84 (473)
T PRK10429 38 GLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWIL---------------------------------IGT 84 (473)
T ss_pred CCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHh---------------------------------hhh
Confidence 789999999999999999999999999999 6699554 45 677
Q ss_pred hhhHHHHHHHhhhhh------hHHHHHHHHHHHhhhhhhhccccccccccccccccccccC-Ccc-hhHHHHHHHHHHHH
Q 047115 133 CCYSNHCSIGGAAFN------IYMLILGCVLLGVGIGFTSQSIQRFNQFAYMILLSSNFET-TRL-SHIDFLLQISICYL 204 (522)
Q Consensus 133 ~l~~~~~~~~~~a~~------~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~i~~~~~~-~~~-g~~~~~~~~~~~lG 204 (522)
+..+++..+....++ +..+++.-++.+++.....+...++ ..| ..+ +++ .+..++...+..+|
T Consensus 85 i~~~i~~~llf~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al--------~~~-lt~~~~eR~~l~~~~~~~~~ig 155 (473)
T PRK10429 85 LANSVVLFLLFSAHLFEGTAQYVFVCVTYILWGMTYTIMDIPFWSL--------VPT-LTLDKREREQLVPYPRFFASLA 155 (473)
T ss_pred HHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHHcchHHhh--------hHH-hCCCHHHHHHHHHHHHHHHHHH
Confidence 777777555543321 3345555566667666665555555 899 774 555 88788767777777
Q ss_pred HHHHHHHHhhhhcc----CCCCchHHHHHhhHHHHHH-HHHHhcccCCChHHHHHhCCCHHHHHHHHHHHcCCcchHHHH
Q 047115 205 ILSANLLNYGTQKI----KGSWGWRISLAMAAVPASI-LTIGSLFLPETPNSIIQRNKDHQKAEEILQIVRNTTDVKAEL 279 (522)
Q Consensus 205 ~~~~~~~~~~l~~~----~~~~gwr~~f~i~~~~~~~-~~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (522)
..+.+.+...+... ....+|+....+.++..++ .++..+..+|.+.. .+.+ .++. .+.+.++
T Consensus 156 ~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~e~~~~--~~~~-~~~~--------~~~~~~~-- 222 (473)
T PRK10429 156 GFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFFIVSTIITLRNVHEVYSS--DNQV-SAEG--------SHLTLKD-- 222 (473)
T ss_pred HHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHcCceecCCc--cccc-cccc--------cCCCHHH--
Confidence 55555443322111 1123677776665555444 33344456765311 0000 0000 0001111
Q ss_pred HHHHHHHHhhccccchhHHHHHHHHHHhhhccchhhHhcHHHHHHHcCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhhc
Q 047115 280 DDIIRASSKIIHRIYRPQLVMAILIPFQQVTRVNVISFNAPVLFMTIKVRKSTSLLMSAVVPDGIGTVSTILPMILADKL 359 (522)
Q Consensus 280 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~ 359 (522)
..+.+++++..+.. +...+......+....+.+++.+...-+....+ .......+..+++.++.+++.||+
T Consensus 223 -----~~~~~~~n~~~~~l---l~~~~~~~~~~~~~~~~~~y~~~y~~~~~~~~~-~~~~~~~i~~ii~~~~~~~l~~r~ 293 (473)
T PRK10429 223 -----IVALIYKNDQLSCL---LGMALAYNIASNIINGFAIYYFTYVIGDADLFP-YYLSYAGAANLVTLILFPRLVKSL 293 (473)
T ss_pred -----HHHHHhcCHHHHHH---HHHHHHHHHHHHHHhhheeeEEEEECCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 11123333222222 222222222223333333433333322334444 555666788899999999999999
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcchhhHHHHHHHHHHHHhhhccccccccccccccCc-------hhh
Q 047115 360 GRTVLFLLGGIQILVSQVMIRSIMAAQLGDHGGFNIGYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFP-------LEI 432 (522)
Q Consensus 360 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p-------~~~ 432 (522)
|+|+.+..+..+..++.+.+...... .....+..++...+.+.+.+... +..+++.+|..+ .+.
T Consensus 294 gkk~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~i~~~l~g~~~~~~~-~~~~am~ad~id~~e~~tG~R~ 364 (473)
T PRK10429 294 SRRILWAGASIFPVLSCGVLLLMGLA--------APHNALLIVIAGILLNIGTALFW-VLQVIMVADTVDYGEYKLGIRC 364 (473)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHhcc--------CchhHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhhhhhhHhcCccc
Confidence 99999887776655554443322100 11223333333333334443332 344566677754 334
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 047115 433 RSAGQSITVAVDLLFTFLVAQTFLAMLCHFKA 464 (522)
Q Consensus 433 r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~ 464 (522)
.|...|..+.+..++..+++.+.|.+.+..|+
T Consensus 365 ~G~~~s~~~~~~K~~~al~~~i~g~~l~~~Gy 396 (473)
T PRK10429 365 ESIAYSVQTMVVKGGSAFAAFFIGVVLGLIGY 396 (473)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 56678888999999999999999998876553
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.2e-16 Score=166.14 Aligned_cols=326 Identities=10% Similarity=0.037 Sum_probs=191.3
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHhhhh----hccccc-cccccccCcccchhhhhhhhhhhhhhhhcccccccch
Q 047115 57 GKFDSQLLAAFTSSLYIAGLIAFLFASKVTRA----FGRKAS-ILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCC 131 (522)
Q Consensus 57 ~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr----~Grk~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (522)
+|++..+.|.+.++..+..++..|+.|.++|| +||||. ++ .+
T Consensus 40 ~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il---------------------------------~~ 86 (444)
T PRK09669 40 FGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLL---------------------------------WF 86 (444)
T ss_pred cCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHH---------------------------------HH
Confidence 48999999999999999999999999999998 788555 44 56
Q ss_pred hhhhHHHHHHHhhhhh------hHHHHHHHHHHHhhhhhhhccccccccccccccccccccC-Ccc-hhHHHHHHHHHHH
Q 047115 132 SCCYSNHCSIGGAAFN------IYMLILGCVLLGVGIGFTSQSIQRFNQFAYMILLSSNFET-TRL-SHIDFLLQISICY 203 (522)
Q Consensus 132 ~~l~~~~~~~~~~a~~------~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~i~~~~~~-~~~-g~~~~~~~~~~~l 203 (522)
.+..++...+....++ ...+++..++.+.+.........++ .+| +.+ +++ ++..++...+..+
T Consensus 87 ~~~~~i~~~l~f~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al--------~~~-~t~~~~eR~~l~~~r~~~~~~ 157 (444)
T PRK09669 87 AIPFGVVCLLTFYTPDFGATGKIIYACVTYILLSLVYTAINVPYCAM--------PGA-ITNDPRERHSLQSWRFALSFI 157 (444)
T ss_pred HHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHhhcchHHHh--------HHH-hcCCHHHHHHHHHHHHHHHHH
Confidence 6666666655544432 3455556666666655554444445 889 664 444 7777888888888
Q ss_pred HHHHHHHHHhhhhccC----CCCchHHHHHhhHHHHHHHHH-HhcccCCChHHHHHhCCCHHHHHHHHHHHcCCcchHHH
Q 047115 204 LILSANLLNYGTQKIK----GSWGWRISLAMAAVPASILTI-GSLFLPETPNSIIQRNKDHQKAEEILQIVRNTTDVKAE 278 (522)
Q Consensus 204 G~~~~~~~~~~l~~~~----~~~gwr~~f~i~~~~~~~~~~-~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (522)
|..+++.+...+.... ...+|+..+.+.++..++..+ ..+..+|.++. ++++ . .+..
T Consensus 158 G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~~~~~~~~~e~~~~--~~~~-~-------------~~~~-- 219 (444)
T PRK09669 158 GGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVLFFCCFFMTKERYTP--EVDN-S-------------SSVW-- 219 (444)
T ss_pred HHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHhCCeEEecCC--CCcC-C-------------CCHH--
Confidence 8777766544333221 135788888776665554433 33444553210 0000 0 0001
Q ss_pred HHHHHHHHHhhccccchhHHHHHHHHH-HhhhccchhhHhcHHHHHHHcCCCCchhhHHHhHHHHHHHHHHHHhHHHHhh
Q 047115 279 LDDIIRASSKIIHRIYRPQLVMAILIP-FQQVTRVNVISFNAPVLFMTIKVRKSTSLLMSAVVPDGIGTVSTILPMILAD 357 (522)
Q Consensus 279 ~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d 357 (522)
+..+++++++..+......++. .... ......+++.+. .++..+..........+..+++.++.++++|
T Consensus 220 -----~~~~~~~~n~~~~~l~~~~~~~~~~~~----~~~~~~~y~~~~-~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~ 289 (444)
T PRK09669 220 -----KDLKLLLGNSQWRIMFIFNVVLLTAVV----TRGGATLYYVNY-VLLRPDLATLFLVTGMIAGLFGALLSERLLG 289 (444)
T ss_pred -----HHHHHHhCCchHHHHHHHHHHHHHHHH----HHhhhhheeeee-ecCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111444444444443333222 1111 111111222221 1222222214455556777888889999999
Q ss_pred hccchHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcchhhHHHHHHHHHHHHhhhccccccccccccccCc-------h
Q 047115 358 KLGRTVLFLLGGIQILVSQVMIRSIMAAQLGDHGGFNIGYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFP-------L 430 (522)
Q Consensus 358 r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p-------~ 430 (522)
|+|+|+....+.....+....+... +.+..+...+..++.+.+.+. ..+..+++.+|..+ .
T Consensus 290 r~gk~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~i~g~~~~~-~~~~~~am~ad~~d~~e~~~G~ 357 (444)
T PRK09669 290 KFDRVRAFKWTIVAFVILSALIFFI-----------PPSNVWLIFALNILFNFIQNL-TTPLQWSMFSDVVDYEEKRSGR 357 (444)
T ss_pred HhChHHHHHHHHHHHHHHHHHHHHh-----------CcchHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhhhhhhcCc
Confidence 9999999887765544333222221 122233334444444444443 33556677777765 2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 047115 431 EIRSAGQSITVAVDLLFTFLVAQTFLAMLCHFKA 464 (522)
Q Consensus 431 ~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~ 464 (522)
+..|...|..+.+..++..+++.+.+.+.+..|+
T Consensus 358 r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~Gy 391 (444)
T PRK09669 358 RLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVDY 391 (444)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3346677888889999999999999999886653
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.2e-15 Score=160.02 Aligned_cols=366 Identities=13% Similarity=0.061 Sum_probs=224.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhhhhHHHHH
Q 047115 61 SQLLAAFTSSLYIAGLIAFLFASKVTRAFGRKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCCYSNHCS 140 (522)
Q Consensus 61 ~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 140 (522)
.+..++..++..+..++..|+.|.++|+-|+||.++ .....+..+.+.
T Consensus 69 ~s~~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l--------------------------------~~~~~~~~~~~~ 116 (477)
T PF11700_consen 69 SSLWLYANSISGLLQALLAPFLGAIADYGGRRKRFL--------------------------------LIFTLLGVLATA 116 (477)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcccccchHHH--------------------------------HHHHHHHHHHHH
Confidence 345678899999999999999999999999988776 044455555556
Q ss_pred HHhhh-h-hhHHHHHHHHHHHhhhhhhhccccccccccccccccccccCCcc---------------------------h
Q 047115 141 IGGAA-F-NIYMLILGCVLLGVGIGFTSQSIQRFNQFAYMILLSSNFETTRL---------------------------S 191 (522)
Q Consensus 141 ~~~~a-~-~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~---------------------------g 191 (522)
+..+. + +++...+.-++.-++.+...+...++ +.| ..++++ +
T Consensus 117 ~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna~--------LP~-la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (477)
T PF11700_consen 117 LLWFVSPGQWWLALVLFIIANVGYEASNVFYNAY--------LPD-LARPEPRVRAAREPSANGNISDSEYEAVDSLTRG 187 (477)
T ss_pred HHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHH--------hHh-hcCCChhhhhhhhhhccCCCChhhhhhHHHhhhc
Confidence 55553 3 34333444444445555555555666 777 655443 4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhccCC-----CCchHHHHHhhHHHH-HHHHHHhcccCCChHHHHHhCCCHHHHHHH
Q 047115 192 HIDFLLQISICYLILSANLLNYGTQKIKG-----SWGWRISLAMAAVPA-SILTIGSLFLPETPNSIIQRNKDHQKAEEI 265 (522)
Q Consensus 192 ~~~~~~~~~~~lG~~~~~~~~~~l~~~~~-----~~gwr~~f~i~~~~~-~~~~~~~~~lpesp~~~~~~~~~~~~~~~~ 265 (522)
+..+.-.+...+|.++.-++...+....+ .++-|..+.+.++.- +..+...+++||.|+. +.. ++..+.
T Consensus 188 ~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~~~~~a~ww~vfsiP~~~~~~~~~~~---~~~--~~~~~~ 262 (477)
T PF11700_consen 188 RVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVAFLIVALWWLVFSIPLFLWLPDRPGP---RPL--PSGSSY 262 (477)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHHHHHHHHHHHHHHHHHHHhCCCCCCC---CCC--CcchhH
Confidence 66666666677777777666655432222 134588887776654 4456667788887642 111 111110
Q ss_pred HHHHcCCcchHHHHHHHHHHHHhhccccchhHHHHHHHHHHhhhccchhhHhcHHHHHH-HcCCCCchhhHHHhHHHHHH
Q 047115 266 LQIVRNTTDVKAELDDIIRASSKIIHRIYRPQLVMAILIPFQQVTRVNVISFNAPVLFM-TIKVRKSTSLLMSAVVPDGI 344 (522)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~ 344 (522)
.....+++.+..+++.+ .+.+...++..+...-+.+.+......+.+ .+|++..+.. .......+.
T Consensus 263 ---------~~~g~~~l~~t~k~~~~---~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~-~~~l~~~i~ 329 (477)
T PF11700_consen 263 ---------LRFGFKRLWRTFKEIRK---LRQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLI-VFGLVVQIV 329 (477)
T ss_pred ---------HHHHHHHHHHHHHHHHh---ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHH-HHHHHHHHH
Confidence 11222333333323322 233333333334444555666666666664 7899999988 888899999
Q ss_pred HHHHHHhHHHHhhhccch--HHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcchhhHHHHHHHHHHHHhhhccccccccc
Q 047115 345 GTVSTILPMILADKLGRT--VLFLLGGIQILVSQVMIRSIMAAQLGDHGGFNIGYAYLILFLICVYKAGFAFSRGPLGWL 422 (522)
Q Consensus 345 ~~~~~~~~g~l~dr~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (522)
+++|+++.+++.||+|.| +.+..+.+...+..+.-.+-.. .... .....+...++..+.+...+ +..+...+
T Consensus 330 a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~--~~~~---g~~~~~~f~~~a~~~G~~~G-~~qs~sRs 403 (477)
T PF11700_consen 330 AIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFW--PSFF---GLKSPWEFWVLAVLIGLFMG-GIQSASRS 403 (477)
T ss_pred HHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhh--hccc---CcccHHHHHHHHHHHHHHhh-hHHHHHHH
Confidence 999999999999999999 7766665554322222111000 0011 11223333444444444433 33445667
Q ss_pred cccccCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-chhhHHHHHHHHHHHHHHHhhccCCCCC
Q 047115 423 VPSEIFPLEIRSAGQSITVAVDLLFTFLVAQTFLAMLCHFK-AGVFFCFGGWVAFMTTFVHFFLPETKYM 491 (522)
Q Consensus 423 ~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 491 (522)
+.+|+.|+++.+.-+|+....+...++++|.+++.+.+..+ ...-+....+.++.+++++..++.+|.+
T Consensus 404 ~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~~v~~~~g~ 473 (477)
T PF11700_consen 404 LFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILLFFVDVEKGR 473 (477)
T ss_pred HHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhccchhhh
Confidence 77999999999999999999999999999999999999887 3222333333444445555556554443
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.1e-15 Score=160.14 Aligned_cols=327 Identities=12% Similarity=0.098 Sum_probs=217.0
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHhhh----hhccccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhh
Q 047115 58 KFDSQLLAAFTSSLYIAGLIAFLFASKVTR----AFGRKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSC 133 (522)
Q Consensus 58 ~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d----r~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (522)
++++...|.+..+..+..++..|+.|.++| |+||||..+ +.+..
T Consensus 33 gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~--------------------------------l~g~i 80 (428)
T PF13347_consen 33 GLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWI--------------------------------LIGAI 80 (428)
T ss_pred CCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEe--------------------------------ehhhH
Confidence 789999999999999999999999999999 899877665 16777
Q ss_pred hhHHHHHHHhhh-h-------hhHHHHHHHHHHHhhhhhhhccccccccccccccccccccCC-cc-hhHHHHHHHHHHH
Q 047115 134 CYSNHCSIGGAA-F-------NIYMLILGCVLLGVGIGFTSQSIQRFNQFAYMILLSSNFETT-RL-SHIDFLLQISICY 203 (522)
Q Consensus 134 l~~~~~~~~~~a-~-------~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~i~~~~~~~-~~-g~~~~~~~~~~~l 203 (522)
+.+++.+++... + ....+.+.-++..++.........++ ..| ..++ ++ .+..+.-+.+..+
T Consensus 81 ~~~~~~~llf~~~p~~~~~~~~~~~~~~~~~l~~~~~t~~~i~~~al--------~~~-lt~~~~~R~~l~~~~~~~~~~ 151 (428)
T PF13347_consen 81 LLALSFFLLFSPPPAGLSFTAKLVWLFVFYILFDIAYTFVQIPYNAL--------IPE-LTPDPDERTRLSSWRMIFSMI 151 (428)
T ss_pred HHHHHHHHhhccccchhhhhhHHHHHHHHHHHHHHhhhhccCchhhc--------Ccc-ccccHhhhhhHHHHHHHHHHH
Confidence 888877777655 3 22334556666677776665555555 999 7764 44 8888888888888
Q ss_pred HHHHHHHHHhhhhccCCC----CchHHHHHhhHHHHHHHH-HHhcccCCChHHHHHhCCCHHHHHHHHHHHcCCcchHHH
Q 047115 204 LILSANLLNYGTQKIKGS----WGWRISLAMAAVPASILT-IGSLFLPETPNSIIQRNKDHQKAEEILQIVRNTTDVKAE 278 (522)
Q Consensus 204 G~~~~~~~~~~l~~~~~~----~gwr~~f~i~~~~~~~~~-~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (522)
|.++...+...+.+..+. .+|++...+.++..++.. +..+..+|.++...++++ +.+.+
T Consensus 152 g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~~i~~~~~ke~~~~~~~~~~-~~~~~--------------- 215 (428)
T PF13347_consen 152 GSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFFLITFFFVKERSVEVTEQEK-KISLR--------------- 215 (428)
T ss_pred HHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHhhhhhheeeecccccccccc-ccccc---------------
Confidence 887666666555543331 279988887766655544 444566772211000000 00001
Q ss_pred HHHHHHHHHhhccccchhHHHHHHHHHHhhhccchhhHhcHHHHHHH-cCCCCchhhHHHhHHHHHHHHHHHHhHHHHhh
Q 047115 279 LDDIIRASSKIIHRIYRPQLVMAILIPFQQVTRVNVISFNAPVLFMT-IKVRKSTSLLMSAVVPDGIGTVSTILPMILAD 357 (522)
Q Consensus 279 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d 357 (522)
+..+++++++..+..+....+ ...+........+++.+. .|.+ ...+ .......+..+++.++.++++|
T Consensus 216 -----~~~~~~~~nr~~~~l~~~~~~---~~~~~~~~~~~~~y~~~~vl~~~-~~~~-~~~~~~~~~~~v~~~~~~~l~~ 285 (428)
T PF13347_consen 216 -----DSLRSLFRNRPFRILLLAFFL---QWLAFALMNTFLPYYFTYVLGNE-GLIS-IFMLIFFVASIVGSPLWGRLSK 285 (428)
T ss_pred -----cchhhhcccchHHHHHHHHHH---HHhhhhhhhhHHHHHHHHHhcCc-hhhH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 111144444433333333333 233333334444555543 3444 4444 5677788999999999999999
Q ss_pred hccchHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcchhhHHHHHHHHHHHHhhhccccccccccccccCch-------
Q 047115 358 KLGRTVLFLLGGIQILVSQVMIRSIMAAQLGDHGGFNIGYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFPL------- 430 (522)
Q Consensus 358 r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~------- 430 (522)
|+|+|+....+..+..++.+.+.+.. .++.+...+...+.+.+.+... ...+++.+|..+.
T Consensus 286 r~gk~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~i~~~l~gi~~~~~~-~~~~a~~ad~id~~e~~tg~ 353 (428)
T PF13347_consen 286 RFGKKKVYIIGLLLAALGFLLLFFLG-----------PGSPWLVLILFILAGIGYGAFF-VIPWAMLADVIDYDEWKTGR 353 (428)
T ss_pred HccceeehhhhHHHHHHHHHHHHHHH-----------hhhHHHHHHHHHHhHhhhcccc-cccccccccchhhHHHhcCC
Confidence 99999999999888888877766652 1344555555555555555443 5666777888763
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 047115 431 EIRSAGQSITVAVDLLFTFLVAQTFLAMLCHFK 463 (522)
Q Consensus 431 ~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g 463 (522)
+..|...|+.+....++..+++.+.+.+.+..|
T Consensus 354 r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~G 386 (428)
T PF13347_consen 354 RREGMYFSVNSFFIKIGQGLAGAIVGLLLALVG 386 (428)
T ss_pred CchHHHHHhhhhhhHHHHHHHHHHHHHHHHHhC
Confidence 345788899999999999999999998887654
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.4e-16 Score=158.71 Aligned_cols=352 Identities=14% Similarity=0.081 Sum_probs=207.4
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccCcccchhhhhhhhhhhhhhhhcccccccchh--hhh
Q 047115 58 KFDSQLLAAFTSSLYIAGLIAFLFASKVTRAFGRKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCS--CCY 135 (522)
Q Consensus 58 ~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~ 135 (522)
|+|.++.|.+.++..+...+.+|+.|.++||+|.||-++ ... ++.
T Consensus 39 GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll---------------------------------~~i~~l~~ 85 (412)
T PF01306_consen 39 GLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLL---------------------------------WFIAILLL 85 (412)
T ss_dssp ---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHH---------------------------------HHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHH---------------------------------HHHHHHHH
Confidence 789999999999999999999999999999999877655 222 211
Q ss_pred HHHHH-HHhhh----hhhH-HHHHHHHHHHhhhhhhhccccccccccccccccccccCCcchhHHHHHHHHHHHHHHHHH
Q 047115 136 SNHCS-IGGAA----FNIY-MLILGCVLLGVGIGFTSQSIQRFNQFAYMILLSSNFETTRLSHIDFLLQISICYLILSAN 209 (522)
Q Consensus 136 ~~~~~-~~~~a----~~~~-~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~lG~~~~~ 209 (522)
..+.+ ...+. .|.+ ..+++-+..|+......+...++ +.+ +. ++++.-.|-.....++|.+++.
T Consensus 86 l~~pff~~v~~pll~~n~~lg~iig~i~l~~~f~~~~~~~Ea~--------~er-~s-r~~~feYG~~R~wGSig~ai~s 155 (412)
T PF01306_consen 86 LFGPFFIYVFGPLLQSNFWLGAIIGGIYLGLVFNAGVPLSEAY--------AER-VS-RRNGFEYGRARMWGSIGFAIAS 155 (412)
T ss_dssp TCHHHHHHTHHHHHHTT-HHHHHHTTTTTTTTTTTHHHHHHHH--------HHH-HH-HHHSS-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHH--------HHH-HH-HHhcCCcchHHHHhhHHHHHHH
Confidence 11222 21222 2322 22333333444444444555555 333 22 2224455556677788888888
Q ss_pred HHHhhhhccCCCCchHHHHHhhHHHHHHHHHHhcc-cCCChHHHHHhCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHHh
Q 047115 210 LLNYGTQKIKGSWGWRISLAMAAVPASILTIGSLF-LPETPNSIIQRNKDHQKAEEILQIVRNTTDVKAELDDIIRASSK 288 (522)
Q Consensus 210 ~~~~~l~~~~~~~gwr~~f~i~~~~~~~~~~~~~~-lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (522)
.+++.+.+. +-+..|+++...+++..++.++ -|+.++....++. ++++ +.+...++.. +
T Consensus 156 ~~~G~L~~i----~p~~~fwi~s~~~~il~lll~~~~~~~~~~~~~~~~--~~~~----------~~~~~~~~~~----~ 215 (412)
T PF01306_consen 156 LLAGILFNI----NPNIIFWIASAAAIILLLLLLLLKPDVPPQAEVADA--LGAK----------KDKVSLKDVL----S 215 (412)
T ss_dssp HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHSS---SSSSS-SSTT--SSS----------------HHHHH----H
T ss_pred HHhheeeee----CccHHHHHHHHHHHHHHHHHHHcCCcCchhhhhhcc--cccC----------CCCCcHHHHH----H
Confidence 888777643 3457777766655554444333 3333221000110 0000 0000111111 3
Q ss_pred hccccchhHHHHHHHHHHhhhccchhhHhcHHHHHHHc----CCCCchhhHHHhHHHHHHHHHHHHhHHHHhhhccchHH
Q 047115 289 IIHRIYRPQLVMAILIPFQQVTRVNVISFNAPVLFMTI----KVRKSTSLLMSAVVPDGIGTVSTILPMILADKLGRTVL 364 (522)
Q Consensus 289 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~ 364 (522)
+++.+ +.+..........+.++.+-...+.++... +.++...+ .+.+...+..++.-.+.+++.+|+|.|+.
T Consensus 216 l~k~~---~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G-~l~s~~v~~E~~~m~~~p~li~rig~k~~ 291 (412)
T PF01306_consen 216 LFKMR---NFWFFVLFVIGVAAIYDVFDQQFPIYFASFFQSAGQGNQMYG-YLWSVQVFLEALMMFFSPWLINRIGAKNL 291 (412)
T ss_dssp HTTSH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH-HHHH
T ss_pred Hhcch---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChhHHh-HHHHHHHHHHHHHHHHHHHHHHhcChHhH
Confidence 44333 333222222222233343433345555443 33445566 77888888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCCCCcchhhHHHHHHHHHHHHhhhccccccccccccccCchhhhhHHHHHH-HHH
Q 047115 365 FLLGGIQILVSQVMIRSIMAAQLGDHGGFNIGYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSIT-VAV 443 (522)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~-~~~ 443 (522)
++++..++.+=....++. +.++.....=.+.+..+....... .-+.++.+|++..++...+. +..
T Consensus 292 Lllag~i~~iRi~~~~~~-------------~~~~~i~~~klLH~~e~~l~lva~-fkYI~~~fd~rlsAt~y~v~~~~~ 357 (412)
T PF01306_consen 292 LLLAGVIMAIRIIGSGFA-------------TNPWVISLIKLLHALEFPLLLVAA-FKYITAHFDKRLSATLYLVGFQFA 357 (412)
T ss_dssp HHHHHHHHHHHHHHHHT---------------SHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHS-GGGHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHhhh-------------cchHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCCHhHHHHHHHHHHHHH
Confidence 999988888887776654 334445555555555554443333 35668999999999999886 567
Q ss_pred HHHHHHHHHHHHHHHHHhccc-hhhHHHHHHHHHHHHHHHhhccCCCC
Q 047115 444 DLLFTFLVAQTFLAMLCHFKA-GVFFCFGGWVAFMTTFVHFFLPETKY 490 (522)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~i~~~~~~~~~~~~~~ 490 (522)
.+++..+.+.+.|.++|+.|. ..+++.+.+.+...++..+.+++.++
T Consensus 358 ~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~~~~~ 405 (412)
T PF01306_consen 358 KQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLKKDKK 405 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--SSS
T ss_pred HHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeeecCCCc
Confidence 889999999999999999995 57888888877777777777765544
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.9e-15 Score=156.79 Aligned_cols=323 Identities=10% Similarity=0.047 Sum_probs=179.8
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHhhhhh----cccccc-ccccccCcccchhhhhhhhhhhhhhhhcccccccchh
Q 047115 58 KFDSQLLAAFTSSLYIAGLIAFLFASKVTRAF----GRKASI-LPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCS 132 (522)
Q Consensus 58 ~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~----Grk~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (522)
|++..+.|.+.+...+..++..++.|+++||. ||||.+ . .+.
T Consensus 40 gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~---------------------------------~~~ 86 (448)
T PRK09848 40 GVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLL---------------------------------FGT 86 (448)
T ss_pred CCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHH---------------------------------HHH
Confidence 78999999999999999999999999999996 776655 3 444
Q ss_pred hhhHHHHHHHh-h----hh--hhHHHHHHHHHHHhhhhhhhccccccccccccccccccccCC-cc-hhHHHHHHHH---
Q 047115 133 CCYSNHCSIGG-A----AF--NIYMLILGCVLLGVGIGFTSQSIQRFNQFAYMILLSSNFETT-RL-SHIDFLLQIS--- 200 (522)
Q Consensus 133 ~l~~~~~~~~~-~----a~--~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~i~~~~~~~-~~-g~~~~~~~~~--- 200 (522)
+...+.+++.. . +. ....+++.-++.+++.+...+...++ ..+ ...+ ++ .+..++-..+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al--------~~~-~~~~~~~r~~~~~~r~~~~~~ 157 (448)
T PRK09848 87 APLMIFSVLVFWVPTDWSHSSKVVYAYLTYMGLGLCYSLVNIPYGSL--------ATA-MTQQPQSRARLGAARGIAASL 157 (448)
T ss_pred HHHHHHHHHHHhCcCCCCcchHHHHHHHHHHHHHHHHHHhcccHhhh--------hhh-hcCCHHHHHHHHHHHHHHHHH
Confidence 44443333321 1 11 22334445567787777776665555 666 5444 33 6665555443
Q ss_pred --HHHHHHHHHHHHhhhhccCCCCchHHHHHhhHHHHH-HHHHHhcccCCChHHHHHhCCCHHHHHHHHHHHcCCcchHH
Q 047115 201 --ICYLILSANLLNYGTQKIKGSWGWRISLAMAAVPAS-ILTIGSLFLPETPNSIIQRNKDHQKAEEILQIVRNTTDVKA 277 (522)
Q Consensus 201 --~~lG~~~~~~~~~~l~~~~~~~gwr~~f~i~~~~~~-~~~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (522)
..++..++|.++....... ..+|.....+.++..+ ..++.....||++. ++.+ ++. ..+
T Consensus 158 ~~~~~~~~~~p~i~~~~g~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~e~~~---~~~~-~~~-------------~~~ 219 (448)
T PRK09848 158 TFVCLAFLIGPSIKNSSPEEM-VSVYHFWTIVLAIAGMVLYFICFKSTRENVV---RIVA-QPS-------------LKI 219 (448)
T ss_pred HHHHHHHHHHHHHHHhCCCch-hhhHHHHHHHHHHHHHHHHHHHHcCcEeccC---CCcc-CCC-------------HHH
Confidence 3345555665554322110 0122211122222222 22233344566532 0111 000 001
Q ss_pred HHHHHHHHHHhhccccchhHHHHHHHHHHhhhccchhhHhcHHHHHH-HcCCCCchhhHHHhHHHHHHHHHHHHhHHHHh
Q 047115 278 ELDDIIRASSKIIHRIYRPQLVMAILIPFQQVTRVNVISFNAPVLFM-TIKVRKSTSLLMSAVVPDGIGTVSTILPMILA 356 (522)
Q Consensus 278 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 356 (522)
..+++++++.........++ ............|.+++ ..|.+..... +......++.+++.++.+++.
T Consensus 220 -------~~~~l~~n~~f~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~l~~~l~ 288 (448)
T PRK09848 220 -------SLQTLKRNRPLFMLCIGALC---VLISTFAVSASSLFYVRYVLNDTGLFTV-LVLVQNLVGTVASAPLVPGMV 288 (448)
T ss_pred -------HHHHHhCCchHHHHHHHHHH---HHHHHHHHhhhheeeEeeecCChHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 11134443333322222222 22222233334455444 3465554444 444444567788999999999
Q ss_pred hhccchHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcchhhHHHHHHHHHHHHhhhccccccccccccccCchh-----
Q 047115 357 DKLGRTVLFLLGGIQILVSQVMIRSIMAAQLGDHGGFNIGYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFPLE----- 431 (522)
Q Consensus 357 dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~----- 431 (522)
||+++|+.+..+..+..++.+.+... +....+...+...+.+.+.+... +..++..+|..|.+
T Consensus 289 ~r~g~~~~~~~g~~~~~i~~~~~~~~-----------~~~~~~~~~~~~~l~g~G~~~~~-~~~~al~~~~~~~~~~~~g 356 (448)
T PRK09848 289 ARIGKKNTFLIGALLGTCGYLLFFWV-----------SVWSLPVALVALAIASIGQGVTM-TVMWALEADTVEYGEYLTG 356 (448)
T ss_pred HHhCcHHHHHHHHHHHHHHHHHHHHc-----------CchhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhhHHhhC
Confidence 99999999998887777766555432 11223333333334444444333 33445556766543
Q ss_pred --hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 047115 432 --IRSAGQSITVAVDLLFTFLVAQTFLAMLCHFK 463 (522)
Q Consensus 432 --~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g 463 (522)
.+|...|+.+....++..+++.+.+.+.+..|
T Consensus 357 ~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~G 390 (448)
T PRK09848 357 VRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLSG 390 (448)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 45888999999999999999999998877654
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=2e-14 Score=151.71 Aligned_cols=326 Identities=9% Similarity=-0.007 Sum_probs=184.6
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHhhhh----hccccccccccccCcccchhhhhhhhhhhhhhhhcccccccchh
Q 047115 57 GKFDSQLLAAFTSSLYIAGLIAFLFASKVTRA----FGRKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCS 132 (522)
Q Consensus 57 ~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr----~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (522)
+|+++...|.+..+.-+--++..|+.|.++|| +||||..+ +.+.
T Consensus 40 ~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~i--------------------------------l~g~ 87 (460)
T PRK11462 40 FGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWV--------------------------------LFGA 87 (460)
T ss_pred hCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhH--------------------------------hHHH
Confidence 38899999999999999999999999999995 68877655 1566
Q ss_pred hhhHHHHHHHhhhhh------hHHHHHHHHHHHhhhhhhhccccccccccccccccccccCCc-c-hhHHHHHHHHHHHH
Q 047115 133 CCYSNHCSIGGAAFN------IYMLILGCVLLGVGIGFTSQSIQRFNQFAYMILLSSNFETTR-L-SHIDFLLQISICYL 204 (522)
Q Consensus 133 ~l~~~~~~~~~~a~~------~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~-~-g~~~~~~~~~~~lG 204 (522)
+..+++..++...++ ...+.+.-++..++.......-.++ .+| ..++. + ++..++...+..+|
T Consensus 88 i~~~i~~~llf~~p~~s~~~~~~y~~~~~~~~~~~~t~~~ipy~al--------~~~-lt~d~~eRt~l~s~r~~~~~iG 158 (460)
T PRK11462 88 LPFGIVCVLAYSTPDLSMNGKMIYAAITYTLLTLLYTVVNIPYCAL--------GGV-ITNDPTQRISLQSWRFVLATAG 158 (460)
T ss_pred HHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHHHhccHHHH--------HHH-hcCCHHHHHHHHHHHHHHHHHH
Confidence 777777666544432 3344445555566665554444444 888 77644 4 89999999999988
Q ss_pred HHHHHHHHhhhhccCC----CCchHHHHHhhHHHHHHHHH-HhcccCCChHHHHHhCCCHHHHHHHHHHHcCCcchHHHH
Q 047115 205 ILSANLLNYGTQKIKG----SWGWRISLAMAAVPASILTI-GSLFLPETPNSIIQRNKDHQKAEEILQIVRNTTDVKAEL 279 (522)
Q Consensus 205 ~~~~~~~~~~l~~~~~----~~gwr~~f~i~~~~~~~~~~-~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (522)
..+++.+...+....+ ..+|+....+.+++.++... .....+|.++. + .++ .+.
T Consensus 159 ~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~~i~~~~~kE~~~~-----~-~~~-----------~~~---- 217 (460)
T PRK11462 159 GMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMMLAFCFFTTKERVEA-----P-PTT-----------TSM---- 217 (460)
T ss_pred HHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHhcceeccCC-----C-ccC-----------CCH----
Confidence 8887776544433221 23688766665555444433 33344553210 0 000 000
Q ss_pred HHHHHHHHhhccccchhHHHHHHHHHHhhhccchhhHhcHHHHHHHcCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhhc
Q 047115 280 DDIIRASSKIIHRIYRPQLVMAILIPFQQVTRVNVISFNAPVLFMTIKVRKSTSLLMSAVVPDGIGTVSTILPMILADKL 359 (522)
Q Consensus 280 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~ 359 (522)
++..+..++++.++......++.............|...+. .|. ....+ .......+..+++.+++++++||+
T Consensus 218 ---~~~l~~~~~Nk~~~~l~~~~~~~~~~~~~~~~~~~y~~~y~--~g~-~~~~~-~~l~~~~i~~iig~~l~~~l~~r~ 290 (460)
T PRK11462 218 ---REDLRDIWQNDQWRIVGLLTIFNILAVCVRGGAMMYYVTWI--LGT-PEVFV-AFLTTYCVGNLIGSALAKPLTDWK 290 (460)
T ss_pred ---HHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhh--cCC-hHHHH-HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 11111334444444333332222221111122222222222 122 22333 456677788889999999999999
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcchhhHHHHHHHHHHHHhhhccccccccccccccCc-------hhh
Q 047115 360 GRTVLFLLGGIQILVSQVMIRSIMAAQLGDHGGFNIGYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFP-------LEI 432 (522)
Q Consensus 360 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p-------~~~ 432 (522)
++|+....+.....+..+++.+. +....+...+..++.+.+.+ ...++.+.+.+|..+ .+.
T Consensus 291 gkk~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~l~g~~~~-~~~~l~~~m~ad~~d~~e~~tG~r~ 358 (460)
T PRK11462 291 CKVTIFWWTNALLAVISLAMFFV-----------PMQASITMFVFIFVIGVLHQ-LVTPIQWVMMSDTVDYGEWCNGKRL 358 (460)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHh-----------chhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhHhhhHHhcCCCc
Confidence 99988765544333322222221 11212122222233333322 223444555566554 223
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 047115 433 RSAGQSITVAVDLLFTFLVAQTFLAMLCHFK 463 (522)
Q Consensus 433 r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g 463 (522)
.|...+.......++..+++.+.+.+++..|
T Consensus 359 ~g~~~a~~~f~~Klg~alg~~i~g~iL~~~G 389 (460)
T PRK11462 359 TGISFAGTLFVLKLGLAFGGALIGWMLAYGG 389 (460)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3444566668888999999999888887544
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=6e-15 Score=146.75 Aligned_cols=356 Identities=9% Similarity=-0.004 Sum_probs=234.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhhhhHHHH
Q 047115 60 DSQLLAAFTSSLYIAGLIAFLFASKVTRAFGRKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCCYSNHC 139 (522)
Q Consensus 60 ~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 139 (522)
+.+.++...++..+..++.+|+-|.++|+.|+||...- ....+..+..
T Consensus 56 ~~a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~--------------------------------~f~~i~i~~~ 103 (438)
T COG2270 56 STAYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFG--------------------------------FFTAIGIIST 103 (438)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHH--------------------------------HHHHHHHHHH
Confidence 45678899999999999999999999999999887770 4444455555
Q ss_pred HHHhhhhh--h-HHHHHHHHHHHhhhhhhhccccccccccccccccccccCCcc-hhHHHHHHHHHHHHHHHHHHHHhhh
Q 047115 140 SIGGAAFN--I-YMLILGCVLLGVGIGFTSQSIQRFNQFAYMILLSSNFETTRL-SHIDFLLQISICYLILSANLLNYGT 215 (522)
Q Consensus 140 ~~~~~a~~--~-~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~-g~~~~~~~~~~~lG~~~~~~~~~~l 215 (522)
++..+.++ + +..++.-.+..++.....+.-.++ +.+ ..++++ ++..+.-.....+|..+.-+.....
T Consensus 104 ~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vfyds~--------L~~-~~~k~~~~riS~lg~~~gylgs~i~li~~~~~ 174 (438)
T COG2270 104 FLLWFIPPGSYLLLLLLFLILASIGFEFSNVFYDSM--------LPR-LTTKDNMGRISGLGWALGYLGSVILLIFVVLG 174 (438)
T ss_pred HHHHHhCCCchHHHHHHHHHHHHHhcchhheehhhH--------hhh-hcCccccCcccccccccccccchHHHHHHHHH
Confidence 55555544 4 455556677788877777777777 999 999999 9998887777777776665553222
Q ss_pred hccC---------------CCCchHHHHHhhHHHHHH-HHHHhcccCCChHHHHHhCCCHHHHHHHHHHHcCCcchHHHH
Q 047115 216 QKIK---------------GSWGWRISLAMAAVPASI-LTIGSLFLPETPNSIIQRNKDHQKAEEILQIVRNTTDVKAEL 279 (522)
Q Consensus 216 ~~~~---------------~~~gwr~~f~i~~~~~~~-~~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (522)
.-.. +...=|..+.+.++..++ .+.+++..|+.++- +.+ ..+ ......
T Consensus 175 ~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iPm~~~v~~~~~~---~~~-~~~------------~l~~g~ 238 (438)
T COG2270 175 FALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFALPMILNVHDAEKI---SSP-PPT------------ALRNGF 238 (438)
T ss_pred HhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHhHHHhcccccccc---ccc-chH------------HHHHHH
Confidence 1111 123467777777665554 44455566665431 001 100 122334
Q ss_pred HHHHHHHHhhccccchhHHHHHHHHHHhhhccchhhHhcHHHHHH-HcCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhh
Q 047115 280 DDIIRASSKIIHRIYRPQLVMAILIPFQQVTRVNVISFNAPVLFM-TIKVRKSTSLLMSAVVPDGIGTVSTILPMILADK 358 (522)
Q Consensus 280 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr 358 (522)
+++.++.+++.+++.....+++. +...-+.+.+......+-. ++|++..+.. +......+.+++|+++.|++.||
T Consensus 239 k~L~~t~k~i~~~~~i~~FLiA~---~~~~DGv~til~~~~~fg~~~~gls~~~ll-l~g~~~~vvA~lg~ii~g~Ld~r 314 (438)
T COG2270 239 KELKSTFKEIRGRKNLVLFLIAR---FFYIDGVNTILAMGGVFGAADLGLSSTELL-LIGIALSVVAALGAIIAGFLDER 314 (438)
T ss_pred HHHHHHHHHHhcccchHHHHHHH---HHHHhhHHHHHHHHHHHHHHHcCccHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555544333333333 4444556667777777765 7899999998 88888999999999999999999
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcchhhHHHHHHHHHHHHhhhccccccccccccccCchhhhhHHHH
Q 047115 359 LGRTVLFLLGGIQILVSQVMIRSIMAAQLGDHGGFNIGYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQS 438 (522)
Q Consensus 359 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g 438 (522)
+|.|+++..+.+...+..+...+.. .+...| .+..+.+...+ +.......+..+..|+++-++.+|
T Consensus 315 fg~k~vl~~~lvi~~~~~~~~~~~~----------~~~~f~---i~gll~g~s~G-~~qA~SRSy~~~lvp~~k~~~fFg 380 (438)
T COG2270 315 FGSKPVLMIGLVILSIAALYLIFLE----------GELDFW---ILGLLVGTSLG-GAQASSRSYLARLVPKGKEGRFFG 380 (438)
T ss_pred hCCceeehHHHHHHHHHHHHHHHcc----------ccHHHH---HHHHHHHHhcc-hHHHHHHHHHHHhCCCccccceee
Confidence 9999998888777666555444321 111122 22222222222 233455677789999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhh-HHHHHHHHHHHHHHHhhccCCCC
Q 047115 439 ITVAVDLLFTFLVAQTFLAMLCHFKAGVF-FCFGGWVAFMTTFVHFFLPETKY 490 (522)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~i~~~~~~~~~~~~~~ 490 (522)
+++..+...++++|.+.+.+.+..+.... +....+.+..+++.+...|+.++
T Consensus 381 lyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~L~~v~~~~~ 433 (438)
T COG2270 381 LYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLLLLRVKVPGR 433 (438)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhhEEeecCCCC
Confidence 99999999999999999999988774322 22223334444455555565433
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.3e-16 Score=149.06 Aligned_cols=330 Identities=12% Similarity=0.056 Sum_probs=209.9
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhh-hccccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhhh
Q 047115 56 YGKFDSQLLAAFTSSLYIAGLIAFLFASKVTRA-FGRKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCC 134 (522)
Q Consensus 56 ~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr-~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 134 (522)
|.+++.++..++.|.+++...+.++++|++.|| +|-|..-+ +-++.
T Consensus 73 d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gti---------------------------------i~~~f 119 (459)
T KOG4686|consen 73 DSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTI---------------------------------ILCIF 119 (459)
T ss_pred ccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHH---------------------------------HHHHH
Confidence 446778888899999999999999999999996 57666555 44455
Q ss_pred hHHHHHHHh---hhhhhHHHHHHHHHHHhhhhhhhccccccccccccccccccccCCcc-hhHHHHHHHHHHHHHHHHHH
Q 047115 135 YSNHCSIGG---AAFNIYMLILGCVLLGVGIGFTSQSIQRFNQFAYMILLSSNFETTRL-SHIDFLLQISICYLILSANL 210 (522)
Q Consensus 135 ~~~~~~~~~---~a~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~-g~~~~~~~~~~~lG~~~~~~ 210 (522)
..+|.++.+ ..+.+|.+..+|++.|+|.-..-+....| ... |+..|+ +.++|+.....-+|..+-..
T Consensus 120 v~~GqliFa~Ggi~~aFw~M~~GRF~FGIGgESlAVaQN~y--------av~-wFKGKELn~vfGlqlSvAR~GstvNf~ 190 (459)
T KOG4686|consen 120 VFLGQLIFAAGGISHAFWTMLAGRFLFGIGGESLAVAQNKY--------AVY-WFKGKELNFVFGLQLSVARLGSTVNFL 190 (459)
T ss_pred HHHHHHHHHhchHHHHHHHHHhhheeeccCchhhhhhhcce--------eEE-EecCccccchhhHHHHHHHhhceeeee
Confidence 556666554 46889999999999999988888888888 888 899999 99999999888888765544
Q ss_pred HHhhhhcc----CCCCchHH---HHHhhHHHHHHHHHHhcccCCChHHHHHhCCCHHHHHHHHHHHcCCcchHHHHHHHH
Q 047115 211 LNYGTQKI----KGSWGWRI---SLAMAAVPASILTIGSLFLPETPNSIIQRNKDHQKAEEILQIVRNTTDVKAELDDII 283 (522)
Q Consensus 211 ~~~~l~~~----~~~~gwr~---~f~i~~~~~~~~~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (522)
+..++.+. .+..|-.. ...+....+...++...- ..| . ++.+++.+++-++.......+.+
T Consensus 191 lm~~ly~~~~~~~~~~ghT~LG~~l~~~~~tc~~slical~----lg~-----~-D~rAerilh~e~g~~Ge~pkLtd-- 258 (459)
T KOG4686|consen 191 LMPFLYDTMGRMFPGVGHTLLGLWLCFEVKTCKQSLICALS----LGL-----S-DDRAERILHLEEGFLGEEPKLTD-- 258 (459)
T ss_pred ecHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHH----hhh-----h-hhHHHHHHhhhcCcccCCccccc--
Confidence 44443322 11111110 011111111111111110 001 1 23344444333222111111111
Q ss_pred HHHHhhccccchhHHHHHHHHHHhhhccchhhHhcHHHHH-HHcCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhhccch
Q 047115 284 RASSKIIHRIYRPQLVMAILIPFQQVTRVNVISFNAPVLF-MTIKVRKSTSLLMSAVVPDGIGTVSTILPMILADKLGRT 362 (522)
Q Consensus 284 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~ 362 (522)
.+...++.++...++++.......+....|.++ +++|+++..++ .+.+.......+.+++.|.++||.|++
T Consensus 259 -------v~~f~ppfw~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~-~i~s~vy~Isav~spvfg~i~Dk~G~n 330 (459)
T KOG4686|consen 259 -------VNTFYPPFWVLVIICVLYYVAWFPFITLGPMFFQKRFGLSAVSAG-NILSTVYGISAVLSPVFGAISDKYGFN 330 (459)
T ss_pred -------ccccCccHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhhcc-chhhhhhhhhhhhhhhHHHhHhhhcce
Confidence 122334444444444444444445556667777 57899999998 777888888899999999999999999
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHhhCCCCCCcchhhHHHHHHHHHHHHhhhccccccccccccccCchhhhhHHHHHHH
Q 047115 363 VLFLLGGIQI-LVSQVMIRSIMAAQLGDHGGFNIGYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITV 441 (522)
Q Consensus 363 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~ 441 (522)
...+.+..+. ..+...+.+.. .++|....+..+.....+. ..|..++.+.|.++.|++.|..+
T Consensus 331 ~~wv~~a~~~tl~~H~~l~Ft~------------lsPy~~m~~lGLsysllAc----slWP~va~~vpE~qLGTaygf~q 394 (459)
T KOG4686|consen 331 LWWVASACILTLLGHSGLFFTF------------LSPYTSMTFLGLSYSLLAC----SLWPCVASLVPEEQLGTAYGFIQ 394 (459)
T ss_pred ehhHHHHHHHHHHHhhhHHhhh------------ccHHHHHHHHhhhHHHHHH----HHhhhhhhhCCHHHhcchHHHHH
Confidence 8776655443 33334443332 3333333222222121221 23455567788899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcc
Q 047115 442 AVDLLFTFLVAQTFLAMLCHFK 463 (522)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~~~g 463 (522)
...+++-.+.|.+.+.+.|+.|
T Consensus 395 sIqNLgla~i~Iiag~i~d~~g 416 (459)
T KOG4686|consen 395 SIQNLGLAFIPIIAGFIADGDG 416 (459)
T ss_pred HHHhhhhhHHhhhhheeecCCC
Confidence 9999999999999999999876
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=6.1e-14 Score=147.12 Aligned_cols=348 Identities=11% Similarity=0.001 Sum_probs=195.4
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHhhhhh-ccccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhhhhH
Q 047115 58 KFDSQLLAAFTSSLYIAGLIAFLFASKVTRAF-GRKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCCYS 136 (522)
Q Consensus 58 ~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~-Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 136 (522)
|+++.+.+.+.+.+.....++.+++|+++||+ ||||+++ ++.++.+
T Consensus 41 gls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~il---------------------------------iG~il~~ 87 (493)
T PRK15462 41 KYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVM---------------------------------LGALLMA 87 (493)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHH---------------------------------HHHHHHH
Confidence 77999999999999999999999999999999 9999999 9999999
Q ss_pred HHHHHHhhhh-hhHHHHHHHHHHHhhhhhhhccccccccccccccccccccCCc--c-hhHHHHHHHHHHHHHHHHHHHH
Q 047115 137 NHCSIGGAAF-NIYMLILGCVLLGVGIGFTSQSIQRFNQFAYMILLSSNFETTR--L-SHIDFLLQISICYLILSANLLN 212 (522)
Q Consensus 137 ~~~~~~~~a~-~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~--~-g~~~~~~~~~~~lG~~~~~~~~ 212 (522)
++.++.+... +...+.++..+.++|.|...+...++ ++| .+|++ + ....++...+.++|..++|.+.
T Consensus 88 lg~lll~~~~~~~~~~~l~l~li~iG~G~~~~~~~al--------v~e-lfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~ 158 (493)
T PRK15462 88 IGHVVLGASEIHPSFLYLSLAIIVCGYGLFKSNVSCL--------LGE-LYEPTDPRRDGGFSLMYAAGNVGSIIAPIAC 158 (493)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHhcccccccHHHH--------HHH-HCCCCCccccceehHHHHHHHHHHHHHHHHH
Confidence 9887776543 22334444445556667666666677 999 87764 4 7789999999999999999999
Q ss_pred hhhhccCCCCchHHHHHhhHHHHHHHHHHhcccCCChHHH-HHhCCCHHHHHHHHHHH-------------cCCcchHHH
Q 047115 213 YGTQKIKGSWGWRISLAMAAVPASILTIGSLFLPETPNSI-IQRNKDHQKAEEILQIV-------------RNTTDVKAE 278 (522)
Q Consensus 213 ~~l~~~~~~~gwr~~f~i~~~~~~~~~~~~~~lpesp~~~-~~~~~~~~~~~~~~~~~-------------~~~~~~~~~ 278 (522)
+.+.+. .|||+.|.++++..++.++..+...+..... ..+++ +.+.++..... -......++
T Consensus 159 g~L~~~---~Gw~~~F~iaaigm~l~li~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (493)
T PRK15462 159 GYAQEE---YSWAMGFGLAAVGMIAGLVIFLCGNRHFTHTRGVNKK-VLRATNFLLPNWGWLLVLLVATPALITVLFWKE 234 (493)
T ss_pred HHHHhh---hChHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCC-CchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 988754 4899999987665554444333211110000 00001 00000000000 000000000
Q ss_pred HHH-H------------HHHHHhhccccchhHHHHHHHHH---HhhhccchhhHhcHHHHHHH------cCCCCchhhHH
Q 047115 279 LDD-I------------IRASSKIIHRIYRPQLVMAILIP---FQQVTRVNVISFNAPVLFMT------IKVRKSTSLLM 336 (522)
Q Consensus 279 ~~~-~------------~~~~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~ 336 (522)
... . ........++..|+++...+.+. ...+..+.-...-...+.++ .|++-. .. +
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~er~r~~~~~~l~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~g~~ip-~~-~ 312 (493)
T PRK15462 235 WSVYALIVATIIGLGVLAKIYRKAENQKQRKELGLIVTLTFFSMLFWAFAQQGGSSISLYIDRFVNRDMFGYTVP-TA-M 312 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccchhcceeeC-HH-H
Confidence 000 0 00000001222233433322222 11111111111111222222 133322 33 4
Q ss_pred HhHHHHHHHHHHHHhHHHHhhhccc--h-----HHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcchhhHHHHHHHHHHH
Q 047115 337 SAVVPDGIGTVSTILPMILADKLGR--T-----VLFLLGGIQILVSQVMIRSIMAAQLGDHGGFNIGYAYLILFLICVYK 409 (522)
Q Consensus 337 ~~~~~~~~~~~~~~~~g~l~dr~g~--~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (522)
..+...+.-++.+++..++-.|..| | .-+.++.++++++.+.+....... +++ .....++.+....+..
T Consensus 313 ~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~-~~~---~~~s~~wl~~~~~~~t 388 (493)
T PRK15462 313 FQSINAFAVMLCGVFLAWVVKESVAGNRTVRIWGKFALGLGLMSAGFCILTLSARWS-AMY---GHSSLPLMVLGLAVMG 388 (493)
T ss_pred HHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhc-CCC---CCcCHHHHHHHHHHHH
Confidence 5667777677777766666555522 2 125567777777776665433211 111 1123344444444444
Q ss_pred HhhhccccccccccccccCchhhhhHHHHHHHHHH-HHHHHHHHHHHHHH
Q 047115 410 AGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVD-LLFTFLVAQTFLAM 458 (522)
Q Consensus 410 ~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~-~~~~~~~~~~~~~~ 458 (522)
.+ -...+|+..+.++++.|++.||..+|+..... .+++.++..+.+..
T Consensus 389 ~g-El~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~~~g~~~~~~ 437 (493)
T PRK15462 389 FA-ELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYLAGVIADQT 437 (493)
T ss_pred HH-HHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44 34567888888899999999999999986543 46666665555443
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.1e-14 Score=145.42 Aligned_cols=271 Identities=10% Similarity=0.015 Sum_probs=177.3
Q ss_pred hhhhhhHHHHHHHHHHHhhhhhhhccccccccccccccccccccCCcc-hhHHHHHHHHHHHHHHHHHHHHhhhhccCC-
Q 047115 143 GAAFNIYMLILGCVLLGVGIGFTSQSIQRFNQFAYMILLSSNFETTRL-SHIDFLLQISICYLILSANLLNYGTQKIKG- 220 (522)
Q Consensus 143 ~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~-g~~~~~~~~~~~lG~~~~~~~~~~l~~~~~- 220 (522)
+..++++.++++-++.|.|.+...+....+ +++ ..++++ .+.+++.+...++|..++|.++..+.....
T Consensus 5 ~~~~~~~~~l~~~f~~g~G~~~lq~~~n~~--------v~~-~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~ 75 (310)
T TIGR01272 5 ASQRYYVLFLGALFVLASGLTILQVAANPY--------VSI-LGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAG 75 (310)
T ss_pred HHhhHHHHHHHHHHHHHhhHHHHHhhHHHH--------HHH-HCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCc
Confidence 355789999999999999999999999999 999 988888 999999999999999999999987763211
Q ss_pred ------------CCchHHHHHhhHHHHHHHHHHh--cccCCChHHHHHhCCCHHHHHHHHHHHcCCcchHHHHHHHHHHH
Q 047115 221 ------------SWGWRISLAMAAVPASILTIGS--LFLPETPNSIIQRNKDHQKAEEILQIVRNTTDVKAELDDIIRAS 286 (522)
Q Consensus 221 ------------~~gwr~~f~i~~~~~~~~~~~~--~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (522)
..+||+++++.+...++..+.+ ..+||... ++ .++..+ + +. .+.+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~~-----~~-~~~~~~-------~-~~-~~~~------ 134 (310)
T TIGR01272 76 DLSMQVATANAEAAKVHTPYLLLAGALAVLAIIFAFLPLPELQE-----AD-VARVSS-------G-DT-TQKT------ 134 (310)
T ss_pred chhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCc-----cc-cccccc-------c-cc-cchh------
Confidence 1379999985544433333333 23455321 11 110000 0 00 0000
Q ss_pred HhhccccchhHHHHHHHHHHhhhccchhhHhcHHHHHHH---cCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhhccchH
Q 047115 287 SKIIHRIYRPQLVMAILIPFQQVTRVNVISFNAPVLFMT---IKVRKSTSLLMSAVVPDGIGTVSTILPMILADKLGRTV 363 (522)
Q Consensus 287 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~ 363 (522)
+.++ ++..++.....+...........|.+.|+++ .|+++.+.+ ...+....+.++|+++.+++.||+++|+
T Consensus 135 -~~~~---~~~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~-~~~s~~~~~~~iGr~~~~~l~~r~g~~~ 209 (310)
T TIGR01272 135 -SAFQ---FTHLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAA-HFTAYTWGGAMVGRFIGSAVMPMISQGR 209 (310)
T ss_pred -hHHh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCHHH
Confidence 1111 2233333333344444455667788888864 489999998 8899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcchhhHHHHHHHHHHHHhhhccccccccccccccCchhhhhHHHHHHHHH
Q 047115 364 LFLLGGIQILVSQVMIRSIMAAQLGDHGGFNIGYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAV 443 (522)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~ 443 (522)
.+..+..+..++.++.... + . . .......+.+.+.+..++ .......+..|++ .+++.++. ..
T Consensus 210 ~l~~~~~l~~~~~~l~~~~-----------~-~-~-~~~~~~~l~g~~~s~i~P-~~~s~a~~~~~~~-~~~asai~-~~ 272 (310)
T TIGR01272 210 YLAFNAFLAVLLSIGAALT-----------H-G-Y-VAMWFVLALGLFNSIMFP-TIFSLALNALGRH-TSQGSGIL-CL 272 (310)
T ss_pred HHHHHHHHHHHHHHHHHHc-----------C-C-H-HHHHHHHHHHHHHHHHHH-HHHHHHHhhhhhh-hhhhHHHH-HH
Confidence 8877766665554333221 1 1 1 112223333444443333 3334445666653 45666664 67
Q ss_pred HHHHHHHHHHHHHHHHHhccch
Q 047115 444 DLLFTFLVAQTFLAMLCHFKAG 465 (522)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~g~~ 465 (522)
+.+|+.+.|++.|.+.|+.+..
T Consensus 273 ~~~Gg~i~P~l~G~lad~~g~~ 294 (310)
T TIGR01272 273 AIVGGAIVPLLQGSLADCLGIQ 294 (310)
T ss_pred HHhcchHHHHHHHHHHHhccch
Confidence 7899999999999999987743
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.8e-13 Score=140.34 Aligned_cols=331 Identities=14% Similarity=0.070 Sum_probs=212.0
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHhhhh----hccccccccccccCcccchhhhhhhhhhhhhhhhcccccccchh
Q 047115 57 GKFDSQLLAAFTSSLYIAGLIAFLFASKVTRA----FGRKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCS 132 (522)
Q Consensus 57 ~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr----~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (522)
+|+++...|.+..+.-+--++.-|+.|.++|| +||+|..+ +.+.
T Consensus 43 ~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~l--------------------------------L~g~ 90 (467)
T COG2211 43 FGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWL--------------------------------LWGA 90 (467)
T ss_pred cCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHH--------------------------------HHHh
Confidence 48999999999999999999999999999995 67766544 1777
Q ss_pred hhhHHHHHHHhhhhh------hHHHHHHHHHHHhhhhhhhccccccccccccccccccccCCc-c-hhHHHHHHHHHHHH
Q 047115 133 CCYSNHCSIGGAAFN------IYMLILGCVLLGVGIGFTSQSIQRFNQFAYMILLSSNFETTR-L-SHIDFLLQISICYL 204 (522)
Q Consensus 133 ~l~~~~~~~~~~a~~------~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~-~-g~~~~~~~~~~~lG 204 (522)
+..++.+.++-.+++ ....++.-.+.+++......+-.++ .++ .+++. + .+..++-+.+..+|
T Consensus 91 ip~~i~~~l~F~~p~~~~~~k~~ya~vtY~l~~l~YT~vniPy~al--------~~~-iT~d~~ER~~l~s~R~~~~~~g 161 (467)
T COG2211 91 IPFAIVAVLLFITPDFSMTGKLIYALVTYMLLGLGYTLVNIPYGAL--------GPE-ITQDPQERASLTSWRMVFASLG 161 (467)
T ss_pred HHHHHHHHHHHcCCCcccCcchHHHHHHHHHHHHHHHheeCchhhc--------chh-hcCCHHHHHHHHHHHHHHHHHH
Confidence 888888888877763 3455667777787777665555555 888 66543 4 88889999998888
Q ss_pred HHHHHHHHhhhhccCC----CCchHHHHHhhHHHHHHHHHHhc-ccCCChHHHHHhCCCHHHHHHHHHHHcCCcchHHHH
Q 047115 205 ILSANLLNYGTQKIKG----SWGWRISLAMAAVPASILTIGSL-FLPETPNSIIQRNKDHQKAEEILQIVRNTTDVKAEL 279 (522)
Q Consensus 205 ~~~~~~~~~~l~~~~~----~~gwr~~f~i~~~~~~~~~~~~~-~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (522)
.++...+...+....+ ..||+..-.+.++..++.++..+ -.+|.+. ++.+ .++ +.+.+
T Consensus 162 ~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~~l~~~~~v~ER~~---~~~~-~~~------------~~~~~- 224 (467)
T COG2211 162 GLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVILLLFCFFNVKERVV---ETQP-TKT------------GVKLK- 224 (467)
T ss_pred HHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcccC---cccc-Ccc------------ccccc-
Confidence 7776666555554332 34788777666666555544443 3455432 0110 000 00000
Q ss_pred HHHHHHHHhhccccchhHHHHHHHHHHhhhccchhhHhcHHHHHH-HcCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhh
Q 047115 280 DDIIRASSKIIHRIYRPQLVMAILIPFQQVTRVNVISFNAPVLFM-TIKVRKSTSLLMSAVVPDGIGTVSTILPMILADK 358 (522)
Q Consensus 280 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr 358 (522)
.++....+++++.++...... ++...+.+.......+|.+ ..|.+..... ..........+++.++..++.+|
T Consensus 225 --~~~~~~~~~~Nrp~~~~l~~~---l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~-~~~~~~~~~~l~~~~~~p~L~~~ 298 (467)
T COG2211 225 --LKDSFLLIFKNRPLLLLLLMN---LLLFIAFNIRGSIMVYYVTYVLGDPELFAY-LLLLASGAGLLIGLILWPRLVKK 298 (467)
T ss_pred --HHHHHHHHHccchHHHHHHHH---HHHHHHHHHHhhhhheeEEEEcCChHHHHH-HHHHHHHHHHHHHHHhHHHHHHH
Confidence 111111233333333333222 2222222322222222222 2355555555 56666667777779999999999
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcchhhHHHHHHHHHHHHhhhccccccccccccccCc-------hh
Q 047115 359 LGRTVLFLLGGIQILVSQVMIRSIMAAQLGDHGGFNIGYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFP-------LE 431 (522)
Q Consensus 359 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p-------~~ 431 (522)
+|+|+++.++.++..++.+++.+. +.++.+..++..++...+.+. ..+++|++.+|... .+
T Consensus 299 ~gkk~~~~~~~~~~~i~~~~~~f~-----------~~~~~~l~~~~~~i~~~g~~~-~~~l~wam~~d~vDyge~~TG~R 366 (467)
T COG2211 299 FGKKKLFLIGLLLLAVGYLLLYFT-----------PAGSVVLIVVALIIAGVGTGI-ANPLPWAMVADTVDYGEWKTGVR 366 (467)
T ss_pred hchHHHHHHHHHHHHHHHHHHHhh-----------cCcchHHHHHHHHHHHHHhhc-cccccHHHhcchhhHHHHHhCCC
Confidence 999999999988888888777665 223344445555555555554 45688888888753 23
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 047115 432 IRSAGQSITVAVDLLFTFLVAQTFLAMLCHFK 463 (522)
Q Consensus 432 ~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g 463 (522)
.-|...|....+.-++..++..+.+..++..|
T Consensus 367 ~eGi~~s~~tF~~K~g~ala~~~~g~~L~~~G 398 (467)
T COG2211 367 REGIVYSGMTFFRKLGLALAGFIPGWILGAIG 398 (467)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 44667788888888999999999999888765
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.60 E-value=6e-14 Score=140.33 Aligned_cols=396 Identities=11% Similarity=0.023 Sum_probs=243.0
Q ss_pred HHHHHHHHHHHHHHhhhhhcchhhccccccHHHHHHhhhhhhhcccCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHH
Q 047115 3 IFIVLSCIVAATSGLIFGYDIGVSGGVTLMEPFLKKCFLEVYKKMKEDPKISNYGKFDSQLLAAFTSSLYIAGLIAFLFA 82 (522)
Q Consensus 3 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~~~~~s~~~~~~~i~~~~~ 82 (522)
.++|.+.++.++-++.+++.---.++. ..+...++ + +....-|+..+|++.+....+++
T Consensus 41 ~rRW~vLl~~slL~~SN~~qWI~ya~i---~n~~~~~Y-----------------g-s~~~~~wlsmIym~v~vp~gf~~ 99 (480)
T KOG2563|consen 41 PRRWVVLLAFSLLNFSNGMQWIQYAPI---NNYVNSFY-----------------G-SSSAADWLSMIYMVVSVPFGFAA 99 (480)
T ss_pred hhHhHHHHHHHHHHhcCcchheeehhH---HHHHHHHh-----------------c-chHHHHHHHHHHHHHHHHHhhHH
Confidence 567888888888777777665555444 34455553 3 56677799999999999999999
Q ss_pred HHhhhhhccccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhhhhHHHHHHHhhhh------hhH--HHHHH
Q 047115 83 SKVTRAFGRKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCCYSNHCSIGGAAF------NIY--MLILG 154 (522)
Q Consensus 83 g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~------~~~--~l~~~ 154 (522)
-|+.||+|-|...+ ++..+.++|+.+-..+. .++ ....+
T Consensus 100 mw~ldk~GLR~a~l---------------------------------lgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~G 146 (480)
T KOG2563|consen 100 MWILDKFGLRTALL---------------------------------LGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTG 146 (480)
T ss_pred HHhhcccchHHHHH---------------------------------HHHHHHHHHHHHhhhccCccccccchhhhhHHh
Confidence 99999999999999 99999999999876653 334 66678
Q ss_pred HHHHHhhhhhhhccccccccccccccccccccCCcc-hhHHHHHHHHHHHHHHHHHHHHhhhhccC---CCCchHH--HH
Q 047115 155 CVLLGVGIGFTSQSIQRFNQFAYMILLSSNFETTRL-SHIDFLLQISICYLILSANLLNYGTQKIK---GSWGWRI--SL 228 (522)
Q Consensus 155 r~l~G~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~-g~~~~~~~~~~~lG~~~~~~~~~~l~~~~---~~~gwr~--~f 228 (522)
..+.+.++-.....-..+ ... |+++++ ..+..+-..+..+|.+++.++...+.... ++..|.. .|
T Consensus 147 q~iaa~Aq~Fim~lPski--------A~~-WF~~~qra~A~~~~v~~n~LGvavg~llppilV~~~~~~~~~~~~~~~~f 217 (480)
T KOG2563|consen 147 QSIAAAAQPFILGLPSKI--------AAV-WFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVPSSKDSEDNSWLFFTLF 217 (480)
T ss_pred HHHHHHhhhHhhccccHH--------HHh-hCCcchhhhhhhHHHhcchHHHHHHhhccceecCCCCCcchhHHHHHHHH
Confidence 888888777666555555 556 777777 88888888888888888888877776544 2345654 34
Q ss_pred HhhHHHHHH-HHHHhcccCCChHHHHHhCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHHhhccccchhHHHHHHHHHHh
Q 047115 229 AMAAVPASI-LTIGSLFLPETPNSIIQRNKDHQKAEEILQIVRNTTDVKAELDDIIRASSKIIHRIYRPQLVMAILIPFQ 307 (522)
Q Consensus 229 ~i~~~~~~~-~~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 307 (522)
+.....+++ .....+..++.|+. + ...+....+ +.+ ..+...+.++++..-.. ...+..
T Consensus 218 ~~~~~l~~l~l~l~~~~~~~~P~t---P---ps~s~~~~~----~~~-------f~~si~~~~~n~~F~il---~~~ygi 277 (480)
T KOG2563|consen 218 LGVECLAALLLALVLFVFTKKPPT---P---PSASQAALQ----DAS-------FPKSIKSCFKNRQFIIL---AICYGI 277 (480)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCC---C---CchhHhhhh----cCc-------HHHHHHHHHcCccHHHH---HHHHhh
Confidence 433333322 22222333333321 0 000000000 000 11122244544333222 222222
Q ss_pred hhccchhhHhcHHHHHHHcCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhhccchHHH-HHHHHHHHHHHHHHHHHHHHh
Q 047115 308 QVTRVNVISFNAPVLFMTIKVRKSTSLLMSAVVPDGIGTVSTILPMILADKLGRTVLF-LLGGIQILVSQVMIRSIMAAQ 386 (522)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~-~~~~~~~~~~~~~~~~~~~~~ 386 (522)
....++.....+-..+...|++...++ .......+.+++++++.|.+.||.++-+.. .+......++...+....
T Consensus 278 ~~g~F~~l~~~l~~~l~~sgY~~~~aG-~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t--- 353 (480)
T KOG2563|consen 278 GLGLFNSLSTLLNLALCPSGYEGVFAG-YIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTCT--- 353 (480)
T ss_pred hHHHHHHHHHHhhhccccccCCccccc-hhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhh---
Confidence 222233333333222334477777777 899999999999999999999998765543 333333333322222111
Q ss_pred hCCCCCCcchhhHHHHHHHHHHHHhhhccccccccccccccCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---
Q 047115 387 LGDHGGFNIGYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLVAQTFLAMLCHFK--- 463 (522)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g--- 463 (522)
......+.+...+...+.+..+..|+..-+..|..-|..-++..|+.+..+++.+++-..+.+...+..+
T Consensus 354 -------~~~~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~~~~~~~~ 426 (480)
T KOG2563|consen 354 -------LFLGDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIMGILAEDLGPPG 426 (480)
T ss_pred -------ccCCceEehhhhHHHHHHhhcCCCCcceeeeeeeccccCCcccceeEEeehhHHHHHHHHHHHHHhhccCCCC
Confidence 0111223333444444555667778888777787666667888999999999999999988888887665
Q ss_pred -chh-hHHHHHHHHHHHHHHHhhccCCCCCC
Q 047115 464 -AGV-FFCFGGWVAFMTTFVHFFLPETKYMP 492 (522)
Q Consensus 464 -~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~ 492 (522)
+.. -+.....+.+..+++.++.|+.++++
T Consensus 427 ~~~~~~i~~~~~~~l~~~lva~~r~~y~R~~ 457 (480)
T KOG2563|consen 427 NTFPANIFLTVSALLGAILVAFFRPDYRRLR 457 (480)
T ss_pred CCccchhHhHHHHHHHHHHHhhhhhhHHhHh
Confidence 333 33444444555555555555444433
|
|
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.2e-13 Score=147.25 Aligned_cols=301 Identities=12% Similarity=0.095 Sum_probs=202.0
Q ss_pred HHHHHHHHhhhhhcchhhccccccHHHHHHhhhhhhhcccCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 047115 9 CIVAATSGLIFGYDIGVSGGVTLMEPFLKKCFLEVYKKMKEDPKISNYGKFDSQLLAAFTSSLYIAGLIAFLFASKVTRA 88 (522)
Q Consensus 9 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr 88 (522)
.++.++..+.+++..+.++.+. ..+.+. +++++++.|++.+.+-++..+...+..+...|
T Consensus 99 l~~l~~~~~~q~l~~~y~~s~I--ttiErR------------------F~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r 158 (735)
T KOG3626|consen 99 LVLLSLAAFAQGLYVGYFNSVI--TTIERR------------------FKISSSQSGLIASSYDIGNLLLIIFVSYFGSR 158 (735)
T ss_pred HHHHHHHHHHHHhhhhhhhhhh--hhhhhh------------------cCCCCCcceeEeeecccchhhhhHhHHHhccc
Confidence 3344555566666665555443 233333 37899999999999999999999999999999
Q ss_pred hccccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhhhhHHHHHHHhhh--------------------h--
Q 047115 89 FGRKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCCYSNHCSIGGAA--------------------F-- 146 (522)
Q Consensus 89 ~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a--------------------~-- 146 (522)
.-|-+.+- +|.++++++++++++- +
T Consensus 159 ~HrPr~Ig---------------------------------~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~ 205 (735)
T KOG3626|consen 159 GHRPRWIG---------------------------------IGLVLMGLGSLLFALPHFFSGPYEYELEVIKQSVENPSS 205 (735)
T ss_pred cCccceee---------------------------------echhHHHHHHHHHhChHHhcCcchhhhhhhhccccCCcc
Confidence 88877777 8888888888887761 0
Q ss_pred ---------------------------h--hH-HHHHHHHHHHhhhhhhhccccccccccccccccccccCCcc-hhHHH
Q 047115 147 ---------------------------N--IY-MLILGCVLLGVGIGFTSQSIQRFNQFAYMILLSSNFETTRL-SHIDF 195 (522)
Q Consensus 147 ---------------------------~--~~-~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~-g~~~~ 195 (522)
+ ++ .++++.++.|+|....++...+| +-| ...+++ +..+|
T Consensus 206 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisY--------iDD-nvk~~~SplYlg 276 (735)
T KOG3626|consen 206 SLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISY--------IDD-NVKKKNSPLYLG 276 (735)
T ss_pred ccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCcc--------ccc-cccccCCcHHHH
Confidence 0 22 56779999999999999999999 999 899999 99999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccCCC----------------CchHHHHHhhHHHHHHHHHHhcccCCChHHHHHhCCCH
Q 047115 196 LLQISICYLILSANLLNYGTQKIKGS----------------WGWRISLAMAAVPASILTIGSLFLPETPNSIIQRNKDH 259 (522)
Q Consensus 196 ~~~~~~~lG~~~~~~~~~~l~~~~~~----------------~gwr~~f~i~~~~~~~~~~~~~~lpesp~~~~~~~~~~ 259 (522)
+......+|.++|.+++.++.++... --|..-|++.+...++..+.++++|.......++ + .
T Consensus 277 i~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~fPk~lp~~~~~-~-~ 354 (735)
T KOG3626|consen 277 ILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVPLFFFPKELPKSQKR-K-R 354 (735)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhCcccCcccccc-c-h
Confidence 99999999999999999887753211 1366667777777777666677777654210000 0 0
Q ss_pred HHHHHHHHHHc----CCcchHHHHHHHHHHHHhhccccchhHHHHHHHHH-HhhhccchhhHhcHHHHHH-HcCCCCchh
Q 047115 260 QKAEEILQIVR----NTTDVKAELDDIIRASSKIIHRIYRPQLVMAILIP-FQQVTRVNVISFNAPVLFM-TIKVRKSTS 333 (522)
Q Consensus 260 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~g~~~~~~ 333 (522)
.+..+..+.-+ .+....+.+++..+..+++++ .++++...+. ......+..+..|+|.|++ ++|.+...+
T Consensus 355 ~~~~~~~k~~~~~~~~~~~~~~~ikdfp~s~~~ll~----N~if~~~~l~~~~~~~~~~G~~tFlPKyLE~Qfg~sas~A 430 (735)
T KOG3626|consen 355 ARDLHVLKTESGGAKSDKTFGKKIKDFPKSIKRLLS----NPIFMLVVLASVIESLAITGYITFLPKYLETQFGISASLA 430 (735)
T ss_pred hhhhcccccccccccCCcchhhhHHHHHHHHHHHhc----CchHHHHHHHHHHHHHHHhhHHHhhHHHHHHHcCCCHHHH
Confidence 00000000000 011222334444444444443 4455555555 6666677788899999995 679999998
Q ss_pred hHHHh-HHHHHHHHHHHHhHHHHhhhcc--chHHHHHHHHHHHHHHHH
Q 047115 334 LLMSA-VVPDGIGTVSTILPMILADKLG--RTVLFLLGGIQILVSQVM 378 (522)
Q Consensus 334 ~~~~~-~~~~~~~~~~~~~~g~l~dr~g--~~~~~~~~~~~~~~~~~~ 378 (522)
. .++ .+.--+..+|.+++|++..|+. .|....+..+...++++.
T Consensus 431 n-~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~~~~~~l~l~~ 477 (735)
T KOG3626|consen 431 N-ILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKFVIVCSVLSLLF 477 (735)
T ss_pred H-HHhhhhhhhhhhhhhhccceeeeeecccHHHHHHHHHHHHHHHHHH
Confidence 8 555 4444555677888999999875 344444444444444443
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.9e-13 Score=144.22 Aligned_cols=179 Identities=16% Similarity=0.078 Sum_probs=128.9
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhhhhHH
Q 047115 58 KFDSQLLAAFTSSLYIAGLIAFLFASKVTRAFGRKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCCYSN 137 (522)
Q Consensus 58 ~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 137 (522)
|++..+.++..+...++..++.+++|+++||+|||+++. .+.++..+
T Consensus 282 g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~---------------------------------~~~~~~~~ 328 (490)
T PRK10642 282 HYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVI---------------------------------LGSVALFV 328 (490)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHH---------------------------------HHHHHHHH
Confidence 567777778888888999999999999999999999888 66654433
Q ss_pred HHHH---HhhhhhhHHHHHHHHHHHhhhhhhhccccccccccccccccccccCCcc-hhHHHHHHHHHHHHHHHHHHHHh
Q 047115 138 HCSI---GGAAFNIYMLILGCVLLGVGIGFTSQSIQRFNQFAYMILLSSNFETTRL-SHIDFLLQISICYLILSANLLNY 213 (522)
Q Consensus 138 ~~~~---~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~-g~~~~~~~~~~~lG~~~~~~~~~ 213 (522)
+.+. ...+++...++++|++.|++.+........+ +.| .+|++. +...++......++..++|.+.+
T Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~--------~~~-~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g 399 (490)
T PRK10642 329 LAIPAFILINSNVIGLIFAGLLMLAVILNCFTGVMAST--------LPA-MFPTHIRYSALAAAFNISVLVAGLTPTLAA 399 (490)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHH--------HHH-HCCCccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3322 2234567778889999998877776666777 899 889888 99888643334444566666666
Q ss_pred hhhccCCCCchHHHHHhhHHHHHHHHHHhcccCCChHHHHHh-----CCCHHHHHHHHHHHcCCcchHHHHHHHH
Q 047115 214 GTQKIKGSWGWRISLAMAAVPASILTIGSLFLPETPNSIIQR-----NKDHQKAEEILQIVRNTTDVKAELDDII 283 (522)
Q Consensus 214 ~l~~~~~~~gwr~~f~i~~~~~~~~~~~~~~lpesp~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (522)
.+.+..+ +|+.++++..+++++.++..+++||+|+|+.++ +| .+|+++.+++++. +.+.|.++++
T Consensus 400 ~l~~~~~--~~~~~~~~~~~~~~i~~~~~~~~pes~~~~~~~~~~~~~~-~~~a~~~l~~~~~--~~~~~~~~i~ 469 (490)
T PRK10642 400 WLVESTQ--NLMMPAYYLMVVAVIGLITGVTMKETANRPLKGATPAASD-IQEAKEILVEHYD--NIEQKIDDID 469 (490)
T ss_pred HHHHHhC--CchHHHHHHHHHHHHHHHHHHHhccccCCCCCCccccccc-hhhHHHHhhcccc--cccchhhhcc
Confidence 5554322 578777766666666666677789999987754 77 8889999888874 3444555444
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.6e-15 Score=158.66 Aligned_cols=361 Identities=14% Similarity=0.071 Sum_probs=3.0
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhh
Q 047115 54 SNYGKFDSQLLAAFTSSLYIAGLIAFLFASKVTRAFGRKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSC 133 (522)
Q Consensus 54 ~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (522)
++.|++++++.|++.+.+-++..+..++..+..+|..|-|.+- .|.+
T Consensus 30 ErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig---------------------------------~g~~ 76 (539)
T PF03137_consen 30 ERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIG---------------------------------IGAL 76 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceee---------------------------------ecHH
Confidence 3344899999999999999999999999999999866655555 6666
Q ss_pred hhHHHHHHHhhh--------------------------------------------------hhhHHHHHHHHHHHhhhh
Q 047115 134 CYSNHCSIGGAA--------------------------------------------------FNIYMLILGCVLLGVGIG 163 (522)
Q Consensus 134 l~~~~~~~~~~a--------------------------------------------------~~~~~l~~~r~l~G~~~g 163 (522)
+.++|++++++- .-++.++++.++.|+|..
T Consensus 77 ~~~~g~~l~~lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~ 156 (539)
T PF03137_consen 77 LMGLGSLLFALPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGAT 156 (539)
T ss_dssp ---------------------------------------------------------------------------SSS--
T ss_pred HHHHHHHHHhccHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhcccc
Confidence 666666655431 013667889999999999
Q ss_pred hhhccccccccccccccccccccCCcc-hhHHHHHHHHHHHHHHHHHHHHhhhhccCC---------------CC----c
Q 047115 164 FTSQSIQRFNQFAYMILLSSNFETTRL-SHIDFLLQISICYLILSANLLNYGTQKIKG---------------SW----G 223 (522)
Q Consensus 164 ~~~~~~~~~~~~~~~~~i~~~~~~~~~-g~~~~~~~~~~~lG~~~~~~~~~~l~~~~~---------------~~----g 223 (522)
..++...+| +-| ..++++ +...|+..+...+|.++|.++++.+.+... .. .
T Consensus 157 pl~tLG~tY--------iDD-nv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGA 227 (539)
T PF03137_consen 157 PLYTLGITY--------IDD-NVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGA 227 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCccceeee--------ecc-ccccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHH
Confidence 999999999 999 899999 999999999999999999999887664310 01 2
Q ss_pred hHHHHHhhHHHHHHHHHHhcccCCChHHHHHhCCCHHHHHHHHHHHcCCc----ch----HHHHHHHHHHHHhhccccch
Q 047115 224 WRISLAMAAVPASILTIGSLFLPETPNSIIQRNKDHQKAEEILQIVRNTT----DV----KAELDDIIRASSKIIHRIYR 295 (522)
Q Consensus 224 wr~~f~i~~~~~~~~~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~----~~----~~~~~~~~~~~~~l~~~~~~ 295 (522)
|..-|.+.++..++..+.++++|+.-....+..+..+..++..++.+.++ +. ....++.. ..+++..+
T Consensus 228 WWLGfli~g~~~~l~aipl~~FPk~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~----~~l~~Ll~ 303 (539)
T PF03137_consen 228 WWLGFLICGILLFLSAIPLFFFPKKLPGTSERQEEKESSERKEEDSDKDSFKDPKSKKSFGKSIKDFP----KALKRLLT 303 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCccCCCcccccchhhhhhcchhhhhhhcccccccccchhhhhhhHH----HHHHHHhc
Confidence 55556555555555555555566542211000000000000000000000 00 11122222 22334445
Q ss_pred hHHHHHHHHH-HhhhccchhhHhcHHHHHH-HcCCCCchhhHHHhH-HHHHHHHHHHHhHHHHhhhcc--chHHHHHHHH
Q 047115 296 PQLVMAILIP-FQQVTRVNVISFNAPVLFM-TIKVRKSTSLLMSAV-VPDGIGTVSTILPMILADKLG--RTVLFLLGGI 370 (522)
Q Consensus 296 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~-~~~~~~~~~~~~~g~l~dr~g--~~~~~~~~~~ 370 (522)
+++++...+. .........+..|.|.|++ +++.++.++. ++.. ..-.+..+|.+++|++.+|+. .|.......+
T Consensus 304 Np~f~~~~la~~~~~~~~~G~~tF~pKylE~QF~~sas~A~-~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v 382 (539)
T PF03137_consen 304 NPVFMCLILAGVFESFIVSGFATFLPKYLESQFGLSASQAS-LLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIV 382 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH-HHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHH
Confidence 5666666666 6666667778899999995 6799998888 5444 444477788999999999975 3444444444
Q ss_pred HHHHHHHHHHHHHHHh--------h-CCC------CC-------------------------Cc-chhhHHHHHHHHHHH
Q 047115 371 QILVSQVMIRSIMAAQ--------L-GDH------GG-------------------------FN-IGYAYLILFLICVYK 409 (522)
Q Consensus 371 ~~~~~~~~~~~~~~~~--------~-~~~------~~-------------------------~~-~~~~~~~~~~~~~~~ 409 (522)
...++.+......... . ..+ .. .+ .......++..++..
T Consensus 383 ~~~v~~~~~~~~~~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~ 462 (539)
T PF03137_consen 383 VSIVSVILYSPLFFLGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILS 462 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHeecCCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHH
Confidence 4333333311110000 0 000 00 00 011122222222322
Q ss_pred HhhhccccccccccccccCchhhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHhc
Q 047115 410 AGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDL-LFTFLVAQTFLAMLCHF 462 (522)
Q Consensus 410 ~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~ 462 (522)
+..+....|..... -..+|+++|+.+.|+...+.+ ++.+-+|.++|.+.|+.
T Consensus 463 ~~~~~~~~p~~~i~-LR~V~~~~rs~AlGv~~~~~rllg~IPgPIifG~iiD~t 515 (539)
T PF03137_consen 463 FFTFMSQVPSTLIT-LRCVPPEQRSFALGVQWLIIRLLGFIPGPIIFGAIIDST 515 (539)
T ss_dssp ------------------------------------------------------
T ss_pred HHHHhcccchheee-eccCChhhcchhhhHHHHHHHhhcCcchHHHHhHHHhhh
Confidence 33333344444333 488999999999999887765 56788899999988863
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.1e-11 Score=126.21 Aligned_cols=379 Identities=14% Similarity=0.051 Sum_probs=223.2
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhh-ccccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhhhh
Q 047115 57 GKFDSQLLAAFTSSLYIAGLIAFLFASKVTRAF-GRKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCCY 135 (522)
Q Consensus 57 ~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~-Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 135 (522)
+++|+++..-+.+.|..-.-+...++|+++||+ |+|+.+. ++.+++
T Consensus 56 Lg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~---------------------------------lGail~ 102 (498)
T COG3104 56 LGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIV---------------------------------LGAILM 102 (498)
T ss_pred CCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHH---------------------------------HHHHHH
Confidence 578999999999999988888999999999996 9999999 999999
Q ss_pred HHHHHHHhhhh--hhHHHHHHHHHHHhhhhhhhccccccccccccccccccccCCcc---hhHHHHHHHHHHHHHHHHHH
Q 047115 136 SNHCSIGGAAF--NIYMLILGCVLLGVGIGFTSQSIQRFNQFAYMILLSSNFETTRL---SHIDFLLQISICYLILSANL 210 (522)
Q Consensus 136 ~~~~~~~~~a~--~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~---g~~~~~~~~~~~lG~~~~~~ 210 (522)
.+|.++.+.+. +...+.++-.+.++|.|..-+....+ +.| .+|++. -..++++.++.++|.+++|+
T Consensus 103 ~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~l--------lg~-ly~~~DprrD~gFt~fY~~iNiGsl~~p~ 173 (498)
T COG3104 103 AIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSL--------LGE-LYPKDDPRRDGGFTLFYMGINIGSLIAPI 173 (498)
T ss_pred HHHHHHHhccccccccHHHHHHHHHHhccccccccHHHH--------HHH-hcCCCCcccCCCccEEEEEeehHHHHHHH
Confidence 99999999884 78899999999999999999999999 999 777664 55677788899999999999
Q ss_pred HHhhhhccCCCCchHHHHHhhHHHHHHHHHHhcccCCChHHHH----HhCCCHHHHHHHHHH----H-cC--Cc-chHHH
Q 047115 211 LNYGTQKIKGSWGWRISLAMAAVPASILTIGSLFLPETPNSII----QRNKDHQKAEEILQI----V-RN--TT-DVKAE 278 (522)
Q Consensus 211 ~~~~l~~~~~~~gwr~~f~i~~~~~~~~~~~~~~lpesp~~~~----~~~~~~~~~~~~~~~----~-~~--~~-~~~~~ 278 (522)
+...+... .||+..|.++++-....++..+..+..-.... .+.+...+....... . .. .. ...+.
T Consensus 174 i~~~~~~~---~g~~~gF~~aavGm~~gl~~f~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 250 (498)
T COG3104 174 ITGLLAIN---YGWHVGFGLAAVGMIIGLVIFLLGRRHVKGIGGVPDPNPLSFNFLLPVLGGLVVMILAALLTLLLNQNT 250 (498)
T ss_pred HHHHHHHh---hCHHHHHHHHHHHHHHHHHHHHHccchhcCCCCCCCccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 99988854 48999999988877776665544432100000 000000011100000 0 00 00 00000
Q ss_pred HHHHHHH---------HHhhcc--c--cchhHHHHHHHHH-------HhhhccchhhHhcHHHHHHH--cCCCCchhhHH
Q 047115 279 LDDIIRA---------SSKIIH--R--IYRPQLVMAILIP-------FQQVTRVNVISFNAPVLFMT--IKVRKSTSLLM 336 (522)
Q Consensus 279 ~~~~~~~---------~~~l~~--~--~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~--~g~~~~~~~~~ 336 (522)
.+..... ..+.++ + ..|++++..+.+. ...--..+.+..|.....++ +|++-... +
T Consensus 251 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~er~r~~~~~~Lfl~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~g~~vp~~--~ 328 (498)
T COG3104 251 FSGVLLVISILIAIIYFAEAFRSPKVFDERRRLLAAIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIFGFEVPPA--W 328 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHhhcccccceecCHH--H
Confidence 0000000 001111 1 2233333322222 11111122233333332221 23333322 4
Q ss_pred HhHHHHHHHHHHHHhHHHHhhhccch-------HHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcchhhHHHHHHHHHHH
Q 047115 337 SAVVPDGIGTVSTILPMILADKLGRT-------VLFLLGGIQILVSQVMIRSIMAAQLGDHGGFNIGYAYLILFLICVYK 409 (522)
Q Consensus 337 ~~~~~~~~~~~~~~~~g~l~dr~g~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (522)
..+...+.-++.+++..++..|.+++ .-+-++..+++.+.+++........++ .+..+.++.+....+.
T Consensus 329 fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~~~---~~~~s~~~lil~y~l~- 404 (498)
T COG3104 329 FQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWFGGP---SGLVSVWWLVLSYVLQ- 404 (498)
T ss_pred HHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCC---CCCcCHHHHHHHHHHH-
Confidence 55666666666666666666664333 234456666666666665542221111 1223333333333333
Q ss_pred HhhhccccccccccccccCchhhhhHHHHHHHHHHHHHHHHHHHHHHH------HHHhcc-chhhHHHHHHHHHHHHHHH
Q 047115 410 AGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLVAQTFLA------MLCHFK-AGVFFCFGGWVAFMTTFVH 482 (522)
Q Consensus 410 ~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~------~~~~~g-~~~~~~~~~~~~i~~~~~~ 482 (522)
...-...+|+...+++...|++..+..++........++.++..+.+. ..+... ...|..++.+..+......
T Consensus 405 s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~~~~~~~~~~~~~~~~~~F~~~g~v~i~~~~~~~ 484 (498)
T COG3104 405 SFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAGLTAVTDPAYTAFIEGRVFGTIGVVAIVIGILLL 484 (498)
T ss_pred HHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecccccccchhhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 333445677888888899999999999998888777777777766652 222222 3345555554445444444
Q ss_pred hhcc
Q 047115 483 FFLP 486 (522)
Q Consensus 483 ~~~~ 486 (522)
...|
T Consensus 485 ~~~~ 488 (498)
T COG3104 485 LLSP 488 (498)
T ss_pred HhhH
Confidence 4333
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.2e-12 Score=134.51 Aligned_cols=395 Identities=14% Similarity=0.132 Sum_probs=227.6
Q ss_pred HHHHHHHHHHHHhhhhhcchhhccccccHHHHHHhhhhhhhcccCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 047115 5 IVLSCIVAATSGLIFGYDIGVSGGVTLMEPFLKKCFLEVYKKMKEDPKISNYGKFDSQLLAAFTSSLYIAGLIAFLFASK 84 (522)
Q Consensus 5 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~ 84 (522)
.|....++.+-+++.+...+++.+.. -++.++. || +.+.+..|++.++..++.+++++.+|.
T Consensus 32 ~wrsi~l~~~~sfl~~v~~sI~~~s~--wpYl~~l----------D~------~A~~~ffG~viaa~slg~~i~~liF~~ 93 (488)
T KOG2325|consen 32 NWRSIYLALLNSFLVAVQFSIYLTSM--WPYLQKL----------DP------TATATFFGLVIAASSLGHAIFSLIFGI 93 (488)
T ss_pred chHhHHHHHHHHHHHhhhheEEEeec--chhhhhc----------CC------CCCcchhhHHHHHHHHHHHhcchhhcc
Confidence 46666667777788888888876553 6777775 12 558888999999999999999999999
Q ss_pred hhhhhcc-ccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhhhhHHHHHHH-hhh---h-hhHHHHHHHHHH
Q 047115 85 VTRAFGR-KASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCCYSNHCSIG-GAA---F-NIYMLILGCVLL 158 (522)
Q Consensus 85 l~dr~Gr-k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~a---~-~~~~l~~~r~l~ 158 (522)
.+.|.+. |+.++ .+.++..+|+++- +.. + ..+.++++|++.
T Consensus 94 Ws~k~~~~k~Pli---------------------------------~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~ 140 (488)
T KOG2325|consen 94 WSNKTGSVKKPLI---------------------------------VSFLIAIIGNLLYLALAYVPNGVKYLMLVARILT 140 (488)
T ss_pred cccccCCcccCHH---------------------------------HHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHc
Confidence 9999996 77777 7888889998887 332 3 568899999999
Q ss_pred HhhhhhhhccccccccccccccccccccCCcc-hhHHHHHHHHHHHHHHHHHHHHhhhhccCCC-------Cc---hHHH
Q 047115 159 GVGIGFTSQSIQRFNQFAYMILLSSNFETTRL-SHIDFLLQISICYLILSANLLNYGTQKIKGS-------WG---WRIS 227 (522)
Q Consensus 159 G~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~-g~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~-------~g---wr~~ 227 (522)
|+|.| |..+.+.-+++ -...+. .++++....+..+|..+||.++..+...... .. +..+
T Consensus 141 Gvg~~---------n~a~lR~Y~a~-~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap 210 (488)
T KOG2325|consen 141 GVGVG---------NFAVLRAYIAD-ASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAP 210 (488)
T ss_pred CcCcc---------cHHHHHHHHHh-ccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchH
Confidence 99988 44444444888 666666 9999999999999999999998877654320 11 1244
Q ss_pred HHhhHHHHHHH-HHHhcccCCChHHHHHhCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHHhhccccc-hhHHHHHHHHH
Q 047115 228 LAMAAVPASIL-TIGSLFLPETPNSIIQRNKDHQKAEEILQIVRNTTDVKAELDDIIRASSKIIHRIY-RPQLVMAILIP 305 (522)
Q Consensus 228 f~i~~~~~~~~-~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~ 305 (522)
-++.++..++. +++..++.|.++...+++. .++ ++ .+.+.+ +.-..+. +...+.++...
T Consensus 211 ~w~m~i~~i~~~v~i~~~f~E~~~~~~~~~~-~~~-----~~------~~~~~~-------~~~~~~~d~~~~~vc~~~~ 271 (488)
T KOG2325|consen 211 AWLMAILWIIYIVIILFFFKEVYRGIIDKKK-RSV-----EE------EKSDIE-------KVKKPKLDWVAVLVCIFLR 271 (488)
T ss_pred HHHHHHHHHHHHHHHHhheeecccCcccccc-ccc-----hh------hccchh-------hhccCChhHHHHHHHHHHH
Confidence 55555555554 3445567776542111111 000 00 000000 1111222 22333333333
Q ss_pred Hhhhccchh-hHhcHHHHHHHcCCCCchhhHHHhHHHHHHHHHHHHh---HHHHh-hhccchHHHHHHHHHHHHHHHHHH
Q 047115 306 FQQVTRVNV-ISFNAPVLFMTIKVRKSTSLLMSAVVPDGIGTVSTIL---PMILA-DKLGRTVLFLLGGIQILVSQVMIR 380 (522)
Q Consensus 306 ~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~---~g~l~-dr~g~~~~~~~~~~~~~~~~~~~~ 380 (522)
+........ -..+.+......+++.+++.........+.+.+...+ ..... .++.+|+.+..+......+..+..
T Consensus 272 ~~~~~~~~~iet~~~~~~m~~y~w~~~~av~~~gi~~~~~g~ls~~~~l~~~f~~l~~i~~r~~~~~g~l~~f~~~~i~~ 351 (488)
T KOG2325|consen 272 FVVNFIATTIETLSSALTMVMYGWTGSEAVLYNGITLSISGILSVILLLLYIFTRLGKIDKRRIILLGFLIFFLSYYIFT 351 (488)
T ss_pred HHHHHHHHHHHhccchHHHHHhccccchHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhhccceeeeehHHHHHHhhheee
Confidence 333332222 3334444445668887776623333334444433332 22222 233445555544333333332221
Q ss_pred HHHHHhhC-----C--C-CCCcchh---------hHHHHH--HHHHHHHhhhccccccccccccccCchhhhhHHHHHHH
Q 047115 381 SIMAAQLG-----D--H-GGFNIGY---------AYLILF--LICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITV 441 (522)
Q Consensus 381 ~~~~~~~~-----~--~-~~~~~~~---------~~~~~~--~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~ 441 (522)
........ + + +...... +..... ...+++.++...-.+.. ++-+|+..++.+++..++..
T Consensus 352 yp~~~~s~pv~~~~~~~~~~~~~~y~wc~~~~~v~~~~~l~~~i~~~g~~~P~~~~~~~-tlySkiLgp~~q~~~qg~~~ 430 (488)
T KOG2325|consen 352 YPWGFYSGPVQPYNTTYAGCDFEEYSWCDTTTAVPLILYLISFIVVFGIAFPFISTALD-TLYSKILGPRDQGTMQGVFS 430 (488)
T ss_pred eeccccccccccccccccCcCcccchhhccCcccChhhheeehhheeccccccccchHH-HHHHHHhCCccccceeEEEE
Confidence 11111000 0 0 0000011 111111 11122222221112233 44589999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHH
Q 047115 442 AVDLLFTFLVAQTFLAMLCHFKAGVFFCFGGWVAFMTTF 480 (522)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~ 480 (522)
..+..+..++|.+........|....+.+..+.++....
T Consensus 431 ~~~s~~~~~~~~~~t~~~~~~g~~~v~~~~~~~~l~~~~ 469 (488)
T KOG2325|consen 431 ISGSIARVVGPIFSTAIFTLSGPRPVWIILLCLLLVVAA 469 (488)
T ss_pred eccchhhhhhHHHHhhhHHhcCccHHHHHHHHHHHHHHH
Confidence 999999999999999988888866655555544444443
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.8e-10 Score=115.43 Aligned_cols=330 Identities=11% Similarity=0.019 Sum_probs=202.2
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhc-----cccccccccccCcccchhhhhhhhhhhhhhhhcccccccc
Q 047115 56 YGKFDSQLLAAFTSSLYIAGLIAFLFASKVTRAFG-----RKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSC 130 (522)
Q Consensus 56 ~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~G-----rk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (522)
|++++....+.+.+..++... ..+.+|+.||+.+ ||..++ | .
T Consensus 9 EL~vpA~lv~~lval~~~~ap-~R~~~G~~SD~~~s~~G~rRtPyI---------------------~-----------~ 55 (403)
T PF03209_consen 9 ELGVPAWLVALLVALHYLVAP-LRVWFGHRSDTHPSILGWRRTPYI---------------------W-----------G 55 (403)
T ss_pred HhccHHHHHHHHHHHHHHHHH-HHHHhccccccCcccCcCCchhhh---------------------H-----------H
Confidence 457888888999988887665 6899999999999 887776 1 4
Q ss_pred hhhhhHHHHHHHhhh-----h-------hh--H--HHHHHHHHHHhhhhhhhccccccccccccccccccccCCcc-hhH
Q 047115 131 CSCCYSNHCSIGGAA-----F-------NI--Y--MLILGCVLLGVGIGFTSQSIQRFNQFAYMILLSSNFETTRL-SHI 193 (522)
Q Consensus 131 ~~~l~~~~~~~~~~a-----~-------~~--~--~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~-g~~ 193 (522)
|..+...+..+..++ . +. + ...+.-.+.|+|.+...++..++ ++| ..|+++ +++
T Consensus 56 G~~~~~~g~~~ap~a~~~l~~~~~~~~~~~~~g~~~a~l~F~l~G~G~~~s~T~~lAL--------l~D-~~~e~~R~~~ 126 (403)
T PF03209_consen 56 GTLLQAGGLAIAPFALLLLAESGQQSSGPFWLGLALAALAFLLYGLGVHASGTSFLAL--------LAD-LAPEERRPRV 126 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHhhHhHhHHHHHHH--------HHh-cCCHhhhhhh
Confidence 455555544444332 2 12 2 23335566788888877777777 999 999988 999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHhhH--HHHHHHHHHhcccCCChHHHHHhCCCHHHHHHHHHHHcC
Q 047115 194 DFLLQISICYLILSANLLNYGTQKIKGSWGWRISLAMAA--VPASILTIGSLFLPETPNSIIQRNKDHQKAEEILQIVRN 271 (522)
Q Consensus 194 ~~~~~~~~~lG~~~~~~~~~~l~~~~~~~gwr~~f~i~~--~~~~~~~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~ 271 (522)
.++...+..+|.+++.++.+.+.+..+ .-|..-.+.. +..+...+...+=.|.++....+.+
T Consensus 127 v~ivw~Mli~G~iv~ai~~g~lL~~~s--~~rL~~v~~~~a~i~~~l~~ia~wg~E~r~~~~~~~~-------------- 190 (403)
T PF03209_consen 127 VAIVWVMLIVGIIVSAIVFGRLLDPFS--PERLIQVIQGVALIALLLNLIALWGQEPRRSRRAAAA-------------- 190 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccccC--HHHHHHHHHHHHHHHHHHHHHHHHhcccCCcccccCC--------------
Confidence 999999999999999998877765433 2333333322 2222222222332332210000000
Q ss_pred CcchHHHHHHHHHHHHhhccccchhHHHHHHHHHHhhhccchhhHhcHHHHHHHcCCCCchhhHHHhHHHHHHHHHHHHh
Q 047115 272 TTDVKAELDDIIRASSKIIHRIYRPQLVMAILIPFQQVTRVNVISFNAPVLFMTIKVRKSTSLLMSAVVPDGIGTVSTIL 351 (522)
Q Consensus 272 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 351 (522)
++.+. +.++...+++.++..++++..+++....+.....+ .-|+=-+-+|++..+.. .++...+.+.+++-.+
T Consensus 191 -~~~~~---~f~~a~~~~~~~~~a~~f~~fl~l~t~a~~~QD~i--LEPygg~Vfgmsv~eTT-~Lta~~~~G~L~G~~~ 263 (403)
T PF03209_consen 191 -ERPRP---PFREAWRQVWASPQARRFFVFLFLGTLAFFMQDVI--LEPYGGEVFGMSVGETT-RLTAFWGGGTLLGMLL 263 (403)
T ss_pred -CCCCc---cHHHHHHHHHhCCChhHHHHHHHHHHHHHHhhHHH--cCCchhHHcCCCHHHHH-HHHHHHHHHHHHHHHH
Confidence 00000 11111124444455555555554442222211111 01111244699999988 8999999999999988
Q ss_pred HHHHhh-hccchHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcchhhHHHHHHHHHHHHhhhccccccccccccccCch
Q 047115 352 PMILAD-KLGRTVLFLLGGIQILVSQVMIRSIMAAQLGDHGGFNIGYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFPL 430 (522)
Q Consensus 352 ~g~l~d-r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~ 430 (522)
.+++.. |.++++...+++....+++.++..... ..+.+.......+++.+.+....... ...-+..++
T Consensus 264 ~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~----------~~~~~~~~~~~~l~G~g~G~f~vgal-s~mM~lt~~ 332 (403)
T PF03209_consen 264 AGFLLSRRLGKKRTAALGCLLGALAFALIILAGP----------LGSPWLFRPGVFLLGLGNGLFTVGAL-SLMMDLTSA 332 (403)
T ss_pred HHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHh----------cccchHHHHHHHHHHHhhhHHHHHHH-HHHHhCCCC
Confidence 887766 678888888888877777776655431 12233444444444444333222222 233477778
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047115 431 EIRSAGQSITVAVDLLFTFLVAQTFLAMLCH 461 (522)
Q Consensus 431 ~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 461 (522)
++.|..+|.-...+.++..++..+.+.+.|-
T Consensus 333 ~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~ 363 (403)
T PF03209_consen 333 GRAGLFMGAWGAAQAIARGLGTFLGGALRDL 363 (403)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999888888888888773
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.3e-10 Score=121.15 Aligned_cols=314 Identities=14% Similarity=0.085 Sum_probs=198.9
Q ss_pred HHHHHHHHHHHHHHHhhhhhccccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhhhhHHHHHHHhhhhhhH
Q 047115 70 SLYIAGLIAFLFASKVTRAFGRKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCCYSNHCSIGGAAFNIY 149 (522)
Q Consensus 70 ~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~ 149 (522)
...+...+.++..|.++||+|||..+. ...+...+..++..+.. +|
T Consensus 70 ~~~~~~~i~s~~iG~lSD~~grk~~L~---------------------------------~~~~~~~l~~~~~~~~~-~~ 115 (463)
T KOG2816|consen 70 TAGLLTLISSPLIGALSDRYGRKVVLL---------------------------------LPLFGTILPALCLLFQG-YW 115 (463)
T ss_pred hhHHHHHHHHhhhHHhhhhhhhhhhHH---------------------------------HHHHHHHHhHHHHHHHH-HH
Confidence 456778889999999999999999999 77777777777666655 33
Q ss_pred HHHHHHHHHHhh--hhhhhccccccccccccccccccccCCcc-hhHHHHHHHHHHHHHHHHHHHHhhhhccCCCCchHH
Q 047115 150 MLILGCVLLGVG--IGFTSQSIQRFNQFAYMILLSSNFETTRL-SHIDFLLQISICYLILSANLLNYGTQKIKGSWGWRI 226 (522)
Q Consensus 150 ~l~~~r~l~G~~--~g~~~~~~~~~~~~~~~~~i~~~~~~~~~-g~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~gwr~ 226 (522)
.+ + +.|+. .+.......++ ++| ...+++ ....++.......+..++|.++..+.+.. |.-.
T Consensus 116 ~~-~---~~~l~g~~~~~~s~~~a~--------vad-is~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~---~~a~ 179 (463)
T KOG2816|consen 116 FF-L---LLGLSGGFSAIFSVGFAY--------VAD-ISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKFL---GIAL 179 (463)
T ss_pred Hh-h---hcccccchhhhhhhhhhh--------eee-ccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhc---CchH
Confidence 33 3 44443 33445555666 999 888877 99999999999999999999999888664 5677
Q ss_pred HHHhhHHHHHHH-HHHhcccCCChHHHHHhCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHHhhccccchhHHHHHHHHH
Q 047115 227 SLAMAAVPASIL-TIGSLFLPETPNSIIQRNKDHQKAEEILQIVRNTTDVKAELDDIIRASSKIIHRIYRPQLVMAILIP 305 (522)
Q Consensus 227 ~f~i~~~~~~~~-~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 305 (522)
.|.+..+..++. .....++||+-. ++.+ .+ ....+.........+..+..+ ...+...+|..+......
T Consensus 180 ~f~ia~~~~~~~~~y~~~~l~Esl~---~~~~-~~---~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~r~~l~l~l~~ 249 (463)
T KOG2816|consen 180 VFLIAAASGILSLLYMLLFLPESLQ---EKER-SD---ATLRELTPGSLDSSHVADAFQ---SLTKVGPDRLLLLLLLVA 249 (463)
T ss_pred HHHHHHHHHHHHHHHHhhccccccC---cccc-cc---ccccccCCCcccchhhhhhhh---hhcccCCCccchHHHHHH
Confidence 888877766664 445667898742 1111 10 000000000000111111110 111111122221111111
Q ss_pred ----HhhhccchhhHhcHHHHH-HHcCCCCchhhHHHhHHHHHHHHHHHHhHH-HHhhhccchHHHHHHHHHHHHHHHHH
Q 047115 306 ----FQQVTRVNVISFNAPVLF-MTIKVRKSTSLLMSAVVPDGIGTVSTILPM-ILADKLGRTVLFLLGGIQILVSQVMI 379 (522)
Q Consensus 306 ----~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g-~l~dr~g~~~~~~~~~~~~~~~~~~~ 379 (522)
.....+... ..+.++ ..++++.++.+ ...+..+....++.++.. .+...++.|+...++.....+.....
T Consensus 250 ~~~~~~~~~~~~~---~~~~yl~~~f~w~~~~~s-~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~ 325 (463)
T KOG2816|consen 250 FLSSLPEAGGASD---VLLLYLKAKFGWNKKEFS-DLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLF 325 (463)
T ss_pred HHHHHHHhcCcee---EEEEEEeeecCcCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHH
Confidence 222211110 111222 35699999998 888888888888888777 77778899998888888888887777
Q ss_pred HHHHHHhhCCCCCCcchhhHHHHHHHHHHHHhhhccccccccccccccCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047115 380 RSIMAAQLGDHGGFNIGYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLVAQTFLAML 459 (522)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~ 459 (522)
++.. ..+..+...+. ..+.....|...+..+...+++.+|+++++...+..+.+.++|.+++.++
T Consensus 326 af~~----------~~w~~~~~~v~-----~~~~~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~ 390 (463)
T KOG2816|consen 326 AFAT----------ETWMMFAAGVV-----VALAGIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIF 390 (463)
T ss_pred HHhc----------cchhhhHHHHH-----HHhhcchhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHH
Confidence 7653 12222222221 22222334555567678889999999999999999999999999998876
Q ss_pred Hhc
Q 047115 460 CHF 462 (522)
Q Consensus 460 ~~~ 462 (522)
...
T Consensus 391 ~~t 393 (463)
T KOG2816|consen 391 ALT 393 (463)
T ss_pred HHH
Confidence 543
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.8e-11 Score=124.46 Aligned_cols=169 Identities=15% Similarity=0.045 Sum_probs=123.0
Q ss_pred HhhhccchhhHhcHHHHHHHcCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHH
Q 047115 306 FQQVTRVNVISFNAPVLFMTIKVRKSTSLLMSAVVPDGIGTVSTILPMILADKLGRTVLFLLGGIQILVSQVMIRSIMAA 385 (522)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (522)
+...........+.|.+.++.|++..+.+ +..+...++..++.++.|+++||+|||+.+..+..+..++.++....
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~--- 102 (398)
T TIGR00895 27 LMDGYDLAAMGFAAPAISAEWGLDPVQLG-FLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCALA--- 102 (398)
T ss_pred HHHHHHHHHHHhhHHHHhhccCCCHHHHH-HHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHc---
Confidence 44444445566778888888999999888 88888999999999999999999999999998887777766555432
Q ss_pred hhCCCCCCcchhhHHHHHHHHHHHHhhhccccccccccccccCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Q 047115 386 QLGDHGGFNIGYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLVAQTFLAMLCHFKAG 465 (522)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~ 465 (522)
...+...+...+.+.+.+. ..+....+..|.+|++.|+++.++......++..+++.+.+.+.+..++.
T Consensus 103 ----------~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~ 171 (398)
T TIGR00895 103 ----------TNVTQLLILRFLAGLGLGG-LMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWR 171 (398)
T ss_pred ----------cchHHHHHHHHHHhccccc-chhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccce
Confidence 1122333333343333332 23445577789999999999999999999999999999999998887765
Q ss_pred h-hHHHHHHHHHHHHHHHhhccCCC
Q 047115 466 V-FFCFGGWVAFMTTFVHFFLPETK 489 (522)
Q Consensus 466 ~-~~~~~~~~~i~~~~~~~~~~~~~ 489 (522)
. +.+.+.+..+...+...++||+.
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (398)
T TIGR00895 172 SLFYVGGIAPLLLLLLLMRFLPESI 196 (398)
T ss_pred eehhhhhhHHHHHHHHHHHhCCCCC
Confidence 4 33443455555555666677653
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.31 E-value=4.7e-12 Score=109.78 Aligned_cols=135 Identities=21% Similarity=0.231 Sum_probs=115.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhccccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhhhhHHHHHHHhhhhh
Q 047115 68 TSSLYIAGLIAFLFASKVTRAFGRKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCCYSNHCSIGGAAFN 147 (522)
Q Consensus 68 ~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~ 147 (522)
.+.+.++..++.++.|++.||+|||+.+. .+..+..++.+...+.++
T Consensus 4 ~~~~~~~~~~~~~~~g~~~d~~g~~~~~~---------------------------------~~~~~~~~~~~~~~~~~~ 50 (141)
T TIGR00880 4 LAGYALGQLIYSPLSGLLTDRFGRKPVLL---------------------------------VGLFIFVLSTAMFALSSN 50 (141)
T ss_pred EEeehhHHHHHHhhHHHHHhhcchhHHHH---------------------------------HHHHHHHHHHHHHHHhcc
Confidence 34567888999999999999999999999 888888899888888899
Q ss_pred hHHHHHHHHHHHhhhhhhhccccccccccccccccccccCCcc-hhHHHHHHHHHHHHHHHHHHHHhhhhccCCCCchHH
Q 047115 148 IYMLILGCVLLGVGIGFTSQSIQRFNQFAYMILLSSNFETTRL-SHIDFLLQISICYLILSANLLNYGTQKIKGSWGWRI 226 (522)
Q Consensus 148 ~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~-g~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~gwr~ 226 (522)
++.+.+.+++.|++.+...+....+ +.| ..|+++ ++..++.+....+|..+++.+++.+.+. .+|++
T Consensus 51 ~~~~~~~~~~~g~~~~~~~~~~~~~--------~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~---~~~~~ 118 (141)
T TIGR00880 51 ITVLIIARFLQGFGAAFALVAGAAL--------IAD-IYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQF---LGWRA 118 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHH--------HHH-HCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcc---cchHH
Confidence 9999999999999999998888888 999 898888 9999999999999999999999888744 47999
Q ss_pred HHHhhHHHHHHHHHH-hcccCC
Q 047115 227 SLAMAAVPASILTIG-SLFLPE 247 (522)
Q Consensus 227 ~f~i~~~~~~~~~~~-~~~lpe 247 (522)
.+.+.++..++..+. ..+.||
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~ 140 (141)
T TIGR00880 119 PFLFLAILALAAFILLAFLLPE 140 (141)
T ss_pred HHHHHHHHHHHHHHHHhhcCCC
Confidence 988876665554443 334454
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.31 E-value=8.5e-11 Score=121.39 Aligned_cols=169 Identities=8% Similarity=0.019 Sum_probs=122.9
Q ss_pred HhhhccchhhHhcHHHHHHHcCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHH
Q 047115 306 FQQVTRVNVISFNAPVLFMTIKVRKSTSLLMSAVVPDGIGTVSTILPMILADKLGRTVLFLLGGIQILVSQVMIRSIMAA 385 (522)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (522)
+.............|.+.++.|++..+.+ +..+...++..++.++.|+++||+|||+.+..+.....++.++....
T Consensus 22 ~~~~~~~~~~~~~~~~l~~~~~~s~~~~g-~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~--- 97 (405)
T TIGR00891 22 LLDAFDFFLVALVLAEVAGEFGLTTVDAA-SLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFA--- 97 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCChhhHH-HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHh---
Confidence 55555555666777888889999999999 89999999999999999999999999999998887777776655443
Q ss_pred hhCCCCCCcchhhHHHHHHHHHHHHhhhccccccccccccccCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--
Q 047115 386 QLGDHGGFNIGYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLVAQTFLAMLCHFK-- 463 (522)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g-- 463 (522)
...+..++...+.+.+.+.. .+....+..|.+|+++|+++.++.+....++..+++.+.+.+.+..+
T Consensus 98 ----------~~~~~l~~~~~l~G~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~ 166 (405)
T TIGR00891 98 ----------PGYITMFIARLVIGIGMGGE-YGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDG 166 (405)
T ss_pred ----------ccHHHHHHHHHHHHhhhhhh-hHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 12223333334444443332 23444666899999999999999999999999999999888887765
Q ss_pred chhhHHHHHHHHHHHHHHHhhccCCC
Q 047115 464 AGVFFCFGGWVAFMTTFVHFFLPETK 489 (522)
Q Consensus 464 ~~~~~~~~~~~~i~~~~~~~~~~~~~ 489 (522)
|...+..+++..+..++.....||++
T Consensus 167 w~~~f~~~~~~~~~~~~~~~~~~~~~ 192 (405)
T TIGR00891 167 WRALFFISILPIIFALWLRKNIPEAE 192 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 55444444544444555555566654
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.6e-10 Score=124.42 Aligned_cols=161 Identities=19% Similarity=0.091 Sum_probs=119.4
Q ss_pred hhhHhcHHHHHHHcCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC
Q 047115 313 NVISFNAPVLFMTIKVRKSTSLLMSAVVPDGIGTVSTILPMILADKLGRTVLFLLGGIQILVSQVMIRSIMAAQLGDHGG 392 (522)
Q Consensus 313 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (522)
..+....|.+.++.|++..+.+ ++.+...++.+++.+++|+++||+|||+.++++.++..++.++..+.
T Consensus 184 ~~is~ilp~i~~~~gls~~~~g-~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil~~i~~ll~afa---------- 252 (742)
T TIGR01299 184 FVVGFVLPSAEKDLCIPDSGKG-MLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFV---------- 252 (742)
T ss_pred HHHHHHHHHHHHHhCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHH----------
Confidence 3455667777788899998888 88899999999999999999999999999998887777766655543
Q ss_pred CcchhhHHHHHHHHHHHHhhhccccccccccccccCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------
Q 047115 393 FNIGYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLVAQTFLAMLCHF---------- 462 (522)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~---------- 462 (522)
...+.+++.-++.+++.+.. .+....+++|.+|++.|+...++..+...+|..+++.+...+..+.
T Consensus 253 ---~s~~~llv~R~l~G~g~g~~-~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~~~ 328 (742)
T TIGR01299 253 ---QGYGFFLFCRLLSGFGIGGA-IPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAY 328 (742)
T ss_pred ---hhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhcccccc
Confidence 12233344444444444433 3566688899999999999999999999999988888766655433
Q ss_pred ---cchhhHHHHHHHHHHHHHHHhhccCC
Q 047115 463 ---KAGVFFCFGGWVAFMTTFVHFFLPET 488 (522)
Q Consensus 463 ---g~~~~~~~~~~~~i~~~~~~~~~~~~ 488 (522)
+|..++.+.++..+..++..+++||+
T Consensus 329 ~~~gWR~l~~i~~lp~ll~ll~~~~lPES 357 (742)
T TIGR01299 329 QFHSWRVFVIVCAFPCVFAIGALTFMPES 357 (742)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 24455555555666666677788886
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=2e-10 Score=118.92 Aligned_cols=168 Identities=10% Similarity=0.040 Sum_probs=116.2
Q ss_pred HhhhccchhhHhcHHHHH-HHcCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHH
Q 047115 306 FQQVTRVNVISFNAPVLF-MTIKVRKSTSLLMSAVVPDGIGTVSTILPMILADKLGRTVLFLLGGIQILVSQVMIRSIMA 384 (522)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~ 384 (522)
+....+......+.|.++ ++.|++..+.+ +..+...+...++++..|+++||+|||+.+..+.....++.+.+.+.
T Consensus 17 ~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g-~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~-- 93 (395)
T PRK10054 17 LLLTIGRGATLPFMTIYLSRQYSLSVDLIG-YAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLV-- 93 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHH--
Confidence 444555555666777776 56799999999 88888899999999999999999999999988887777666655443
Q ss_pred HhhCCCCCCcchhhHHHHHHHHHHHHhhhccccccccccccccCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 047115 385 AQLGDHGGFNIGYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLVAQTFLAMLCHFKA 464 (522)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~ 464 (522)
++.+..++..++...+.+ ...+....+..|..|+++|+++.|+.+...+++..++|.+.+.+.+ .++
T Consensus 94 -----------~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~ 160 (395)
T PRK10054 94 -----------NNVTLVVLFFALINCAYS-VFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-QSI 160 (395)
T ss_pred -----------hHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcc
Confidence 112222222223333322 2234445666899999999999999999999999999999888775 454
Q ss_pred h-hhHHHHHHHHHHHHHHHhhccCCC
Q 047115 465 G-VFFCFGGWVAFMTTFVHFFLPETK 489 (522)
Q Consensus 465 ~-~~~~~~~~~~i~~~~~~~~~~~~~ 489 (522)
. .+...+.+..+..++..+++|+.+
T Consensus 161 ~~~f~~~~~~~~i~~i~~~~~~~~~~ 186 (395)
T PRK10054 161 NLPFWLAAICSAFPLVFIQIWVQRSE 186 (395)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3 444444444444344445555543
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.5e-10 Score=121.41 Aligned_cols=168 Identities=11% Similarity=0.023 Sum_probs=122.1
Q ss_pred HhhhccchhhHhcHHHHHHHcCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHH
Q 047115 306 FQQVTRVNVISFNAPVLFMTIKVRKSTSLLMSAVVPDGIGTVSTILPMILADKLGRTVLFLLGGIQILVSQVMIRSIMAA 385 (522)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (522)
+...........+.|.+.++.|++..+.+ +..+...++..+++++.|++.||+|||+.+.++.....++.++....
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~~g~s~~~~g-~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~--- 108 (434)
T PRK11663 33 ALFYFTRKSFNAAMPEMLADLGLSRSDIG-LLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGFS--- 108 (434)
T ss_pred HHHHHhhhhHHHhhHHHHHhcCCCHHHHH-HHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHHH---
Confidence 44333334556778888899999999998 88899999999999999999999999999988888887777655543
Q ss_pred hhCCCCCCcchhhHHHHHHHHHHHHhhhccccccccccccccCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Q 047115 386 QLGDHGGFNIGYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLVAQTFLAMLCHFKAG 465 (522)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~ 465 (522)
++.+...+...+.+.+.+... +....+..|.+|+++|+++.++.+....++..+++.+.+.+.++.+|.
T Consensus 109 ----------~~~~~l~~~~~l~g~~~g~~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~ 177 (434)
T PRK11663 109 ----------SSLWAFALLWVLNAFFQGWGW-PVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWR 177 (434)
T ss_pred ----------hHHHHHHHHHHHHHHHHHccc-hHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHH
Confidence 122233333333334444333 334466689999999999999999999999999999999999888865
Q ss_pred hh-HHHHHHHHHHHHHHHhhccCC
Q 047115 466 VF-FCFGGWVAFMTTFVHFFLPET 488 (522)
Q Consensus 466 ~~-~~~~~~~~i~~~~~~~~~~~~ 488 (522)
.. .+.+.+..+.+++..++++|+
T Consensus 178 ~~f~~~~i~~~~~~~~~~~~~~~~ 201 (434)
T PRK11663 178 YGMMIAGIIAIVVGLFLCWRLRDK 201 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCC
Confidence 44 444444444444445555654
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.25 E-value=4.4e-10 Score=117.06 Aligned_cols=170 Identities=11% Similarity=-0.055 Sum_probs=124.9
Q ss_pred HhhhccchhhHhcHHHHHHHcCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHH
Q 047115 306 FQQVTRVNVISFNAPVLFMTIKVRKSTSLLMSAVVPDGIGTVSTILPMILADKLGRTVLFLLGGIQILVSQVMIRSIMAA 385 (522)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (522)
+.+......+....|.+.+++|++..+.+ +..+...++..++++..|++.||+|||+.+..+.++..++.++....
T Consensus 18 ~~~~~d~~~~~~~~~~l~~~~~~s~~~~g-~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~--- 93 (412)
T TIGR02332 18 IFSFLDRINIGFAGLTMGKDLGLSATMFG-LAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIASTATMFA--- 93 (412)
T ss_pred HHHHhhhhhHHHHHHhhHhhcCCCHHHHH-HHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHHHHHHHHh---
Confidence 55455455566677777789999999999 89999999999999999999999999999988888888777766553
Q ss_pred hhCCCCCCcchhhHHHHHHHHHHHHhhhccccccccccccccCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh----
Q 047115 386 QLGDHGGFNIGYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLVAQTFLAMLCH---- 461 (522)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~---- 461 (522)
++.+...+.-.+.+.+.+.. .+....+.+|.+|+++|+++.++.+....++..+++.+.+.+.++
T Consensus 94 ----------~~~~~l~~~r~l~G~~~~~~-~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ 162 (412)
T TIGR02332 94 ----------TGPESLYLLRILVGIAEAGF-LPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLM 162 (412)
T ss_pred ----------cCHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 11233333334444444432 344456678999999999999999999999999999998887652
Q ss_pred --ccch-hhHHHHHHHHHHHHHHHhhccCCCC
Q 047115 462 --FKAG-VFFCFGGWVAFMTTFVHFFLPETKY 490 (522)
Q Consensus 462 --~g~~-~~~~~~~~~~i~~~~~~~~~~~~~~ 490 (522)
.+|. .+.+.+...++...+.++++||+++
T Consensus 163 ~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~ 194 (412)
T TIGR02332 163 ALKGWQWLFLLEGFPSVILGVMTWFWLDDSPD 194 (412)
T ss_pred CccchhHHHHHHHHHHHHHHHHHhhccCCCcc
Confidence 4554 4445455555556666677787654
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.4e-10 Score=118.66 Aligned_cols=162 Identities=18% Similarity=0.035 Sum_probs=120.5
Q ss_pred hhHhcHHHHHHHcCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC
Q 047115 314 VISFNAPVLFMTIKVRKSTSLLMSAVVPDGIGTVSTILPMILADKLGRTVLFLLGGIQILVSQVMIRSIMAAQLGDHGGF 393 (522)
Q Consensus 314 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (522)
.+....|.+.++.|++..+.+ +..+...++..++.++.|+++||+|||+.+..+.....++..+....
T Consensus 12 ~~~~~~~~~~~~~g~s~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~----------- 79 (399)
T TIGR00893 12 NLSFAAPMLQEDLGLSAAQYG-YVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFA----------- 79 (399)
T ss_pred hhhHhHHHHHHhhCCChhhHH-HHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHH-----------
Confidence 445566777788999999999 99999999999999999999999999999988887777776665543
Q ss_pred cchhhHHHHHHHHHHHHhhhccccccccccccccCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchh-hHHHHH
Q 047115 394 NIGYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLVAQTFLAMLCHFKAGV-FFCFGG 472 (522)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~ 472 (522)
.+.+...+..++.+.+.+.. .+....+..|.+|+++|+++.++.+....++..+++.+.+.+.++.+|.. +...+.
T Consensus 80 --~~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~ 156 (399)
T TIGR00893 80 --GAYVSLYILRVLLGAAEAPF-FPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGV 156 (399)
T ss_pred --cCHHHHHHHHHHHHHHHHhh-hhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHH
Confidence 12333444444444444433 34445677899999999999999999999999999999998888887654 444444
Q ss_pred HHHHHHHHHHhhccCCCC
Q 047115 473 WVAFMTTFVHFFLPETKY 490 (522)
Q Consensus 473 ~~~i~~~~~~~~~~~~~~ 490 (522)
...+..++.++..||+++
T Consensus 157 ~~~~~~~~~~~~~~~~~~ 174 (399)
T TIGR00893 157 LGIIWGVLWLKFIPDPPQ 174 (399)
T ss_pred HHHHHHHHhhheecCCCC
Confidence 444444555555565443
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.3e-10 Score=117.45 Aligned_cols=170 Identities=18% Similarity=0.097 Sum_probs=123.1
Q ss_pred HhhhccchhhHhcHHHHHHHcCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHH
Q 047115 306 FQQVTRVNVISFNAPVLFMTIKVRKSTSLLMSAVVPDGIGTVSTILPMILADKLGRTVLFLLGGIQILVSQVMIRSIMAA 385 (522)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (522)
+....+........|.+.++.|.+..+.+ +..+...++..++.++.|++.||+|||+.+..+.....++.+.....
T Consensus 15 ~~~~~~~~~~~~~~p~~~~~~g~s~~~~g-~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~--- 90 (385)
T TIGR00710 15 ILGPLGIDMYLPAFPEIAADLSTPASIVQ-MTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALS--- 90 (385)
T ss_pred HHHHHHHHHhcccHHHHHHHhCCCHHHHH-HHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHH---
Confidence 33334445555667888889999999999 89999999999999999999999999999998887777776665543
Q ss_pred hhCCCCCCcchhhHHHHHHHHHHHHhhhccccccccccccccCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Q 047115 386 QLGDHGGFNIGYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLVAQTFLAMLCHFKAG 465 (522)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~ 465 (522)
+..+...+..++.+.+.+.. .+....+..|.+|+++|+++.++.+....++..+++.+.+.+.++.+|.
T Consensus 91 ----------~~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~ 159 (385)
T TIGR00710 91 ----------NNIETLLVLRFVQAFGASAG-SVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWH 159 (385)
T ss_pred ----------ccHHHHHHHHHHHHcchhHH-HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHH
Confidence 11223333333333333322 2344466689999999999999999999999999999999988888764
Q ss_pred h-hHHHHHHHHHHHHHHHhhccCCCC
Q 047115 466 V-FFCFGGWVAFMTTFVHFFLPETKY 490 (522)
Q Consensus 466 ~-~~~~~~~~~i~~~~~~~~~~~~~~ 490 (522)
. +.+.+.+..+..+..++..||+++
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (385)
T TIGR00710 160 AIFAFLSLAGILLSALIFFILPETLP 185 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 4 444455555555555556676544
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=99.24 E-value=8.1e-11 Score=122.95 Aligned_cols=376 Identities=9% Similarity=0.016 Sum_probs=205.6
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhc----cccc-cccccccCcccchhhhhhhhhhhhhhhhccccccc
Q 047115 55 NYGKFDSQLLAAFTSSLYIAGLIAFLFASKVTRAFG----RKAS-ILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCS 129 (522)
Q Consensus 55 ~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~G----rk~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (522)
+++|+++++.+...+...+...+ -++.|.++|.+- |||. ++
T Consensus 18 ~~l~ls~~~~~~~~~~~~lPw~~-Kp~~g~lsD~~pi~G~rr~~Y~~--------------------------------- 63 (433)
T PF03092_consen 18 DDLGLSPAQLQRLSSLASLPWSI-KPLYGLLSDSFPIFGYRRKPYMI--------------------------------- 63 (433)
T ss_pred HHcCCCHHHHHHHHHHHhCchHH-hhhHHhhcccccccCCcchHHHH---------------------------------
Confidence 34589999999998888887765 578999999872 4444 44
Q ss_pred chhhhhHHHHHHHhhh----hhhHHHHHHHHHHHhhhhhhhccccccccccccccccccccCCc--c-hhHHHHHHHHHH
Q 047115 130 CCSCCYSNHCSIGGAA----FNIYMLILGCVLLGVGIGFTSQSIQRFNQFAYMILLSSNFETTR--L-SHIDFLLQISIC 202 (522)
Q Consensus 130 ~~~~l~~~~~~~~~~a----~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~--~-g~~~~~~~~~~~ 202 (522)
++.++.+++.+..+.. .+.....+.-++..+|.......+.+. ..| ...++ . |...+.......
T Consensus 64 i~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~la~~g~a~~DV~aDa~--------vvE-~~~~~p~~~g~lqS~~~~~~~ 134 (433)
T PF03092_consen 64 IGWLLGAVSALVLALLPASESSAAIAVVLLFLASFGYAFADVAADAL--------VVE-LARREPESRGDLQSFVWGVRS 134 (433)
T ss_pred HHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHHHhhhHH--------HHH-HhhcCCchhHHHHHHHHHHHH
Confidence 5555554444444432 345666667788889999999999988 888 66433 3 677788888889
Q ss_pred HHHHHHHHHHhhhhccCCCCchHHHHHhhHHHHHHHHHHhc-ccCCChHHHHHhCCCHHHHHHHHHHHcCCcchHHHHHH
Q 047115 203 YLILSANLLNYGTQKIKGSWGWRISLAMAAVPASILTIGSL-FLPETPNSIIQRNKDHQKAEEILQIVRNTTDVKAELDD 281 (522)
Q Consensus 203 lG~~~~~~~~~~l~~~~~~~gwr~~f~i~~~~~~~~~~~~~-~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (522)
+|.+++..+++.+.+.. ++|..|.+.++...+..+..+ ..+|.++ +.+ ++.....++ ..+......++
T Consensus 135 ~G~lv~~~l~G~l~~~~---~~~~~f~i~~~~~~l~~~~~~~~~~e~~~----~~~--~~~~~~~~~--~~~~~~~~~~~ 203 (433)
T PF03092_consen 135 VGSLVGSLLSGPLLDSF---GPQGVFLISAALPLLMLIVALFLLEERKV----RPA--DEVFSFGKE--EVPCLFGSFRE 203 (433)
T ss_pred HHHHHHHHhhhhhhhcC---CCeEEehHHHHHHHHHHHHHHHhhhhccc----ccc--chhhccccc--ccchhhHHHHH
Confidence 99999999988887554 688888877665555444433 4444111 110 000000000 00000000112
Q ss_pred HHHHHHhhcccc-chhHHHHHHHHH-Hhhhccchh-hHhcHHHHHHHcCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhh
Q 047115 282 IIRASSKIIHRI-YRPQLVMAILIP-FQQVTRVNV-ISFNAPVLFMTIKVRKSTSLLMSAVVPDGIGTVSTILPMILADK 358 (522)
Q Consensus 282 ~~~~~~~l~~~~-~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr 358 (522)
..+...+.++.+ .++......++. +..... .. ..++........++++...+ .+..+..++.++|..+......+
T Consensus 204 ~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~-~a~~fy~~~~~~~gp~fs~~f~~-~~~~vg~~~~l~g~~~y~~~~~~ 281 (433)
T PF03092_consen 204 QLSELWRALQQRAIWQPILFFIFFFNLPPSIS-SASSFYFQTDALGGPHFSPSFYG-TLSIVGSIASLLGILLYRKYFSN 281 (433)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHhccCCC-CccEEEEEeccccccccCHHHHH-HHHHHHHHHHHHHHHHHHHHHhC
Confidence 222222333222 122222112122 111111 11 11222111112237777777 66677777888888888777777
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcchhhHHHHHHHHHHHHhhhccccccccccccccCchhhhhHHHH
Q 047115 359 LGRTVLFLLGGIQILVSQVMIRSIMAAQLGDHGGFNIGYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQS 438 (522)
Q Consensus 359 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g 438 (522)
..-|+++..+.+...+..+.-..... ..+..-+.++ .+..+.-..+........+-|.. .+.+|+.|+..-|+.++
T Consensus 282 ~~~R~~~~~t~~~~~~~~l~~~~lv~-~~n~~~Gi~d--~~f~lgd~~l~~~~~~i~~mP~l-vl~a~lcP~G~Egt~ya 357 (433)
T PF03092_consen 282 WSWRRIFVVTTLVSVLASLFDLLLVT-RWNLDLGIPD--QWFALGDTILEEVIGMIAFMPSL-VLAARLCPKGSEGTVYA 357 (433)
T ss_pred CCHHHHHHHHHHHHHHHhcccEEEEE-EEeeeeCcCC--eEEEEEhHHHHHHHHHHHHHHHH-HHHHHHCCCCchHHHHH
Confidence 77777776655444333222111100 0000000011 11111122222233333333443 44579999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccc--------hhhHHHHHHHHHHHHHHHhhccCCCC
Q 047115 439 ITVAVDLLFTFLVAQTFLAMLCHFKA--------GVFFCFGGWVAFMTTFVHFFLPETKY 490 (522)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~g~--------~~~~~~~~~~~i~~~~~~~~~~~~~~ 490 (522)
+...+.+++..++..+...+.+..+. +...+.+.++.+..+....++|+.++
T Consensus 358 ll~s~~Nlg~~~s~~lg~~l~~~~~vt~~~f~~l~~lili~~~~~ll~l~ll~lLp~~~~ 417 (433)
T PF03092_consen 358 LLASFSNLGSSVSSTLGAFLMELFGVTRDDFSNLWLLILICSVIQLLPLPLLFLLPPQKR 417 (433)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHHHHHHcCCCch
Confidence 99999999999999888888776541 22333333333444444456666543
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=7.8e-10 Score=114.24 Aligned_cols=159 Identities=11% Similarity=-0.008 Sum_probs=116.8
Q ss_pred hHhcHHHHHHHcCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCc
Q 047115 315 ISFNAPVLFMTIKVRKSTSLLMSAVVPDGIGTVSTILPMILADKLGRTVLFLLGGIQILVSQVMIRSIMAAQLGDHGGFN 394 (522)
Q Consensus 315 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (522)
.....|.+.+++|.+..+.+ +..+...++..++.+..|++.||+|||+++..+.....++.+.....
T Consensus 28 ~~~~~~~l~~~~~~s~~~~g-~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~------------ 94 (390)
T PRK03545 28 PVGLLSDIAQSFHMQTAQVG-LMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALA------------ 94 (390)
T ss_pred HHcchHHHHhHcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHh------------
Confidence 44456888899999999999 88888888999999999999999999999999888887777666543
Q ss_pred chhhHHHHHHHHHHHHhhhccccccccccccccCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccch-hhHHHHHH
Q 047115 395 IGYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLVAQTFLAMLCHFKAG-VFFCFGGW 473 (522)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~ 473 (522)
++.+..++...+.+.+.+ ...+....+..|.+|+++|+++.|+......++..++|++.+.+.++.+|. .+.+.+.+
T Consensus 95 -~~~~~l~~~r~~~G~~~~-~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~ 172 (390)
T PRK03545 95 -WNFTVLLISRIGIAFAHA-IFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGG 172 (390)
T ss_pred -ccHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHH
Confidence 122333333333333322 223344466689999999999999999999999999999999988888865 45555555
Q ss_pred HHHHHHHHHhhccCC
Q 047115 474 VAFMTTFVHFFLPET 488 (522)
Q Consensus 474 ~~i~~~~~~~~~~~~ 488 (522)
.++.....+...|+.
T Consensus 173 ~~l~~~~~~~~~~~~ 187 (390)
T PRK03545 173 ALITLLLLIKLLPLL 187 (390)
T ss_pred HHHHHHHHHHhCCCC
Confidence 555544555556654
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.3e-10 Score=118.38 Aligned_cols=145 Identities=11% Similarity=-0.000 Sum_probs=118.8
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhhhhHH
Q 047115 58 KFDSQLLAAFTSSLYIAGLIAFLFASKVTRAFGRKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCCYSN 137 (522)
Q Consensus 58 ~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 137 (522)
|+++.+.+++.+...++..++.+++|+++||+|||+.+. .+.....+
T Consensus 248 ~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~---------------------------------~~~~~~~~ 294 (393)
T PRK15011 248 HLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMR---------------------------------VAAVAGVC 294 (393)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHH---------------------------------HHHHHHHH
Confidence 678888999888888888899999999999999999877 66555555
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHhhhhhhhccccccccccccccccccccCCcchhHHHHHHHHHHHHHHHHHHHHhhhhc
Q 047115 138 HCSIGGAAFNIYMLILGCVLLGVGIGFTSQSIQRFNQFAYMILLSSNFETTRLSHIDFLLQISICYLILSANLLNYGTQK 217 (522)
Q Consensus 138 ~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~lG~~~~~~~~~~l~~ 217 (522)
.......+++.+.+++.+++.+++.|...+....+ ..| ..|++++++.++++....+|..+++.+++.+.+
T Consensus 295 ~~~~~~~~~~~~~~l~~~~l~~~~~g~~~~~~~~~--------~~~-~~p~~~g~~~~~~~~~~~lg~~~g~~l~G~i~~ 365 (393)
T PRK15011 295 FYAGMLMAHSPAILLGLQLLNAIYIGILGGIGMLY--------FQD-LMPGQAGSATTLYTNTSRVGWIIAGSLAGIVAE 365 (393)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH--------HHH-hCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54445556778888889999998888777777677 889 888655999999999999999999999998875
Q ss_pred cCCCCchHHHHHhhHHHHHHHHHHhcccCC
Q 047115 218 IKGSWGWRISLAMAAVPASILTIGSLFLPE 247 (522)
Q Consensus 218 ~~~~~gwr~~f~i~~~~~~~~~~~~~~lpe 247 (522)
.. ||+..|.+.+++.++.++..++.||
T Consensus 366 ~~---g~~~~~~~~~~~~~~~~~~~~~~~~ 392 (393)
T PRK15011 366 IW---NYHAVFWFALVMIIATLFCLLRIKD 392 (393)
T ss_pred Hh---hhHHHHHHHHHHHHHHHHHHHhhcC
Confidence 43 7999999888888777777777665
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.5e-09 Score=112.40 Aligned_cols=159 Identities=8% Similarity=-0.034 Sum_probs=116.2
Q ss_pred hHhcHHHHHHHcCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCc
Q 047115 315 ISFNAPVLFMTIKVRKSTSLLMSAVVPDGIGTVSTILPMILADKLGRTVLFLLGGIQILVSQVMIRSIMAAQLGDHGGFN 394 (522)
Q Consensus 315 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (522)
.....|.+.++.|++..+.+ ...+...++..+++++.|++.||+|||+.+..+..+..++.++....
T Consensus 39 ~~~~l~~~~~~~g~s~~~~g-~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~------------ 105 (394)
T PRK10213 39 PVSLLTPMAQDLGISEGVAG-QSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFA------------ 105 (394)
T ss_pred HHhhHHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHH------------
Confidence 33456777889999999999 88888999999999999999999999999999988888776665442
Q ss_pred chhhHHHHHHHHHHHHhhhccccccccccccccCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchh-hHHHHHH
Q 047115 395 IGYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLVAQTFLAMLCHFKAGV-FFCFGGW 473 (522)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~ 473 (522)
++.+..++.-.+.+.+.+. ..+....++.|.+|+++|+++.++......++..++|.+.+.+.+..+|.. +.+.+.+
T Consensus 106 -~~~~~l~~~r~l~G~~~g~-~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l 183 (394)
T PRK10213 106 -NSFSLLLIGRACLGLALGG-FWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVM 183 (394)
T ss_pred -ChHHHHHHHHHHHHHhhHH-HHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 2223333333344444333 334555667899999999999999999999999999999999998888654 4443433
Q ss_pred HHHHHHHHHhhccCC
Q 047115 474 VAFMTTFVHFFLPET 488 (522)
Q Consensus 474 ~~i~~~~~~~~~~~~ 488 (522)
..+..+......||+
T Consensus 184 ~~~~~l~~~~~~p~~ 198 (394)
T PRK10213 184 GVLCIFWIIKSLPSL 198 (394)
T ss_pred HHHHHHHHHHHCCCC
Confidence 333333333445654
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.7e-10 Score=113.69 Aligned_cols=180 Identities=14% Similarity=0.072 Sum_probs=142.6
Q ss_pred hhHHHHHHHHH-HhhhccchhhHhcHHHHHHHcCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhhccchHHHHHHHHHHH
Q 047115 295 RPQLVMAILIP-FQQVTRVNVISFNAPVLFMTIKVRKSTSLLMSAVVPDGIGTVSTILPMILADKLGRTVLFLLGGIQIL 373 (522)
Q Consensus 295 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~ 373 (522)
|.+.++.+.+. ......-..+..-.|.+.++.++|..+.+ .+.+...+..-++..+.|.++||.+.|+.+..++++.+
T Consensus 27 r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG-~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsa 105 (448)
T COG2271 27 RIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLG-ILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSA 105 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHH-HHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHH
Confidence 44455555444 33333334566778888899899999999 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhCCCCCCcchhhHHHHHHHHHHHHhhhccccccccccccccCchhhhhHHHHHHHHHHHHHHHHHHH
Q 047115 374 VSQVMIRSIMAAQLGDHGGFNIGYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLVAQ 453 (522)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~ 453 (522)
+..+++++.. ..+...++..+-+.+.+.+++|...++ +.-+|+++||+..++-|+..++|+.+.|+
T Consensus 106 i~nil~Gfs~-------------s~~~~~~l~~lng~fQg~Gwpp~~~~i-~~Wfsr~eRG~~~siWn~shNiGGal~~~ 171 (448)
T COG2271 106 IVNILFGFSP-------------SLFLFAVLWVLNGWFQGMGWPPCARTI-THWFSRKERGTWWSIWNTSHNIGGALAPL 171 (448)
T ss_pred HHHHHHhhhh-------------HHHHHHHHHHHHHHHhcCCCcHHHHHH-HHHcCccccCceEEEehhhhhcccchHHH
Confidence 9999888752 344556666677777888888777565 68999999999999999999999999999
Q ss_pred HH--HHHHHhccch-hhHHHHHHHHHHHHHHHhhccCCC
Q 047115 454 TF--LAMLCHFKAG-VFFCFGGWVAFMTTFVHFFLPETK 489 (522)
Q Consensus 454 ~~--~~~~~~~g~~-~~~~~~~~~~i~~~~~~~~~~~~~ 489 (522)
+. +.+..+.+|. .|++-++++.+.+++.++..+++.
T Consensus 172 ~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~P 210 (448)
T COG2271 172 VALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRP 210 (448)
T ss_pred HHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 99 8888777764 455666666667777777666543
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.1e-09 Score=106.17 Aligned_cols=234 Identities=16% Similarity=0.128 Sum_probs=147.0
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhhhh
Q 047115 56 YGKFDSQLLAAFTSSLYIAGLIAFLFASKVTRAFGRKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCCY 135 (522)
Q Consensus 56 ~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 135 (522)
++|++..+++.+....+...++..++.|.++||+|||+.-+ +..+++
T Consensus 63 ~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl---------------------------------~~cily 109 (354)
T PF05631_consen 63 SYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACL---------------------------------LFCILY 109 (354)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHH---------------------------------HHHHHH
Confidence 35889999999999999999999999999999999999999 899999
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHhhhhhhhcccccccccccccccccccc----CCcc-hhHHHHHH-HHHHHHHHHHH
Q 047115 136 SNHCSIGGAAFNIYMLILGCVLLGVGIGFTSQSIQRFNQFAYMILLSSNFE----TTRL-SHIDFLLQ-ISICYLILSAN 209 (522)
Q Consensus 136 ~~~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~i~~~~~----~~~~-g~~~~~~~-~~~~lG~~~~~ 209 (522)
+++++. -..++++.++++|++.|++....+.+-.++ ++.| .. |++. +..++... ...++-.+.+.
T Consensus 110 ~~scl~-k~~~~~~~L~~GRvlgGiaTSLLfS~FEsW-------~V~E-h~~~g~~~~~L~~tF~~~tf~~n~~vAI~aG 180 (354)
T PF05631_consen 110 SLSCLT-KHSSNYPVLLLGRVLGGIATSLLFSAFESW-------MVHE-HNKRGFPQEWLSDTFSLATFFGNGVVAIGAG 180 (354)
T ss_pred HHHHHH-HhccccHHHHHHHHHHHHHHHHHHHHHHHH-------HHHH-HHHcCCChHHHHHHHHHHHHHHhHHHHHHHh
Confidence 999874 466899999999999999999999988887 1344 32 2222 33333222 22233334444
Q ss_pred HHHhhhhccCCCCchHHHHHhhHHHHHHHHHHh-cccCCChHHHHHhCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHHh
Q 047115 210 LLNYGTQKIKGSWGWRISLAMAAVPASILTIGS-LFLPETPNSIIQRNKDHQKAEEILQIVRNTTDVKAELDDIIRASSK 288 (522)
Q Consensus 210 ~~~~~l~~~~~~~gwr~~f~i~~~~~~~~~~~~-~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (522)
+++-.+.+..+ .|-..+|..+.+..++..+.. ..-+|.+. ++.+ ..+..+ ..++..+.
T Consensus 181 v~a~~l~~~~~-~g~vaPF~~a~~~l~~~~~~I~~~W~ENyg---~~~~-~~~~~~----------------~~~~a~~~ 239 (354)
T PF05631_consen 181 VVANVLADWFG-FGPVAPFDAAIVLLAVAAVLILKTWPENYG---DTSS-SSSLSG----------------SFREAWRA 239 (354)
T ss_pred HHHHHHHHHhC-CCCcchHHHHHHHHHHHHHHHHhcccccCC---Cccc-ccchHH----------------HHHHHHHH
Confidence 45544443332 234678888777666654443 33345321 0000 111010 11111112
Q ss_pred hccccchhHHHHHHHHH-HhhhccchhhHhcHHHHHHHcCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhh
Q 047115 289 IIHRIYRPQLVMAILIP-FQQVTRVNVISFNAPVLFMTIKVRKSTSLLMSAVVPDGIGTVSTILPMILADK 358 (522)
Q Consensus 289 l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr 358 (522)
+.+ .++++....+. +.....+.....|.|.+- ..+ .....+ ++++...+..++|+.+..++..+
T Consensus 240 i~~---d~ril~LG~~qslFE~smy~FVflWtPaL~-~~~-~~~P~G-lIFssFM~a~MlGS~lf~~l~s~ 304 (354)
T PF05631_consen 240 ILS---DPRILLLGLIQSLFEGSMYLFVFLWTPALD-PDD-EELPLG-LIFSSFMVAMMLGSSLFSRLLSK 304 (354)
T ss_pred HHc---CchhHHHHHHHHHHHHHHHHheeeeeceec-CCC-CCCCch-HHHHHHHHHHHHHHHHHHHHHhC
Confidence 222 23444444444 555555666677888765 111 223455 78888888999999888765543
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.4e-09 Score=109.69 Aligned_cols=166 Identities=14% Similarity=0.014 Sum_probs=136.3
Q ss_pred HhhhccchhhHhcHHHHHHHcCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHH
Q 047115 306 FQQVTRVNVISFNAPVLFMTIKVRKSTSLLMSAVVPDGIGTVSTILPMILADKLGRTVLFLLGGIQILVSQVMIRSIMAA 385 (522)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (522)
|.....-....-.+|.+.++++.+...++ ...+.+..+..+++++...+.||+.||++++....++.++.++..+..
T Consensus 23 F~igttEfv~~gLLp~iA~dl~vs~~~aG-~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~l~alAp-- 99 (394)
T COG2814 23 FAIGTTEFVPVGLLPPIAADLGVSEGAAG-QLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAP-- 99 (394)
T ss_pred HHHHhHHHHHHhchHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHhc--
Confidence 66666666777788999999999999999 999999999999999999999999999999999999999988887752
Q ss_pred hhCCCCCCcchhhHHHHHHHHHHHHhhhccccccccccccccCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Q 047115 386 QLGDHGGFNIGYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLVAQTFLAMLCHFKAG 465 (522)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~ 465 (522)
+.+..++.=.+.+...+. +.++...+..++.|+++|+++.++..+...++..++.++..++-+.+||.
T Consensus 100 -----------~f~~Ll~aR~~~g~a~G~-f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR 167 (394)
T COG2814 100 -----------SFAVLLLARALAGLAHGV-FWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWR 167 (394)
T ss_pred -----------cHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHH
Confidence 223333333443344443 33455677789999999999999999999999999999999999999974
Q ss_pred -hhHHHHHHHHHHHHHHHhhcc
Q 047115 466 -VFFCFGGWVAFMTTFVHFFLP 486 (522)
Q Consensus 466 -~~~~~~~~~~i~~~~~~~~~~ 486 (522)
.|++.+.+..+..+..+..+|
T Consensus 168 ~~F~~ia~l~ll~~~~~~~~lP 189 (394)
T COG2814 168 ATFLAIAVLALLALLLLWKLLP 189 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHhCC
Confidence 577777777777777888888
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.4e-10 Score=120.93 Aligned_cols=148 Identities=14% Similarity=0.112 Sum_probs=121.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhhhhHHHH
Q 047115 60 DSQLLAAFTSSLYIAGLIAFLFASKVTRAFGRKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCCYSNHC 139 (522)
Q Consensus 60 ~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 139 (522)
+.+..+...++..++..++.++.|+++||+|||+++. .+.++.+++.
T Consensus 249 ~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~---------------------------------~~~~~~~v~~ 295 (418)
T TIGR00889 249 VVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVML---------------------------------LSLVAWALRF 295 (418)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHH---------------------------------HHHHHHHHHH
Confidence 4567899999999999999999999999999999999 8888888876
Q ss_pred HHHhhhh----hhHHHHHHHHHHHhhhhhhhccccccccccccccccccccCCcc-hhHHHHHH-HHHHHHHHHHHHHHh
Q 047115 140 SIGGAAF----NIYMLILGCVLLGVGIGFTSQSIQRFNQFAYMILLSSNFETTRL-SHIDFLLQ-ISICYLILSANLLNY 213 (522)
Q Consensus 140 ~~~~~a~----~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~-g~~~~~~~-~~~~lG~~~~~~~~~ 213 (522)
.+..... +++.+++.+++.|++.+...+....+ +.| ..|+++ ++..++.+ ...++|..+||.+++
T Consensus 296 ~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~~~~--------i~~-~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G 366 (418)
T TIGR00889 296 GFFAYGDPEYFGYALLFLSMIVYGCAFDFFNISGSVF--------VEK-EVPVHIRASAQGLFTLMCNGFGSLLGYILSG 366 (418)
T ss_pred HHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH--------HHH-HCCHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 6665532 34667789999999999888888888 999 899888 99999997 678999999999999
Q ss_pred hhhccCCC---CchHHHHHhhHHHHHHH-HHHhcccCCCh
Q 047115 214 GTQKIKGS---WGWRISLAMAAVPASIL-TIGSLFLPETP 249 (522)
Q Consensus 214 ~l~~~~~~---~gwr~~f~i~~~~~~~~-~~~~~~lpesp 249 (522)
.+.+..+. +|||..|.+.++..++. ++..+++||+.
T Consensus 367 ~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~ 406 (418)
T TIGR00889 367 VMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYSH 406 (418)
T ss_pred HHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 88876543 57999998876665554 44455667764
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.3e-09 Score=113.98 Aligned_cols=153 Identities=13% Similarity=0.029 Sum_probs=113.4
Q ss_pred HhhhccchhhHhcHHHHHHHcCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHH
Q 047115 306 FQQVTRVNVISFNAPVLFMTIKVRKSTSLLMSAVVPDGIGTVSTILPMILADKLGRTVLFLLGGIQILVSQVMIRSIMAA 385 (522)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (522)
+.............|.+.++.|.++.+.+ +..+...++..++.++.|+++||+|||+.+..+.+...++.++.....
T Consensus 28 ~~~~~~~~~~~~~~~~i~~~~~~s~~~~~-~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~-- 104 (426)
T PRK12307 28 VFDGFDFMLIFYIMYLIKADLGLTDMEGA-FLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLAS-- 104 (426)
T ss_pred HHHHhHHHHHHHHHHHHHHHhCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHh--
Confidence 44444444555666777788999999988 888999999999999999999999999999999888888777655532
Q ss_pred hhCCCCCCcchhhHHHHHHHHHHHHhhhccccccccccccccCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Q 047115 386 QLGDHGGFNIGYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLVAQTFLAMLCHFKAG 465 (522)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~ 465 (522)
..+...+.-.+.+.+.+. ..+....+..|.+|+++|+++.++......++..+++.+.+.+.+..+|.
T Consensus 105 -----------~~~~l~~~r~l~G~g~g~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~ 172 (426)
T PRK12307 105 -----------GVIMLTLSRFIVGMGMAG-EYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWR 172 (426)
T ss_pred -----------HHHHHHHHHHHHHHHHhh-HHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHH
Confidence 223333333343333332 23344466689999999999999999999999999998888888877765
Q ss_pred hhHHHHHH
Q 047115 466 VFFCFGGW 473 (522)
Q Consensus 466 ~~~~~~~~ 473 (522)
..+.++.+
T Consensus 173 ~~f~i~~~ 180 (426)
T PRK12307 173 AAFFVGLL 180 (426)
T ss_pred HHHHHHHH
Confidence 54444443
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.3e-09 Score=112.68 Aligned_cols=170 Identities=11% Similarity=0.117 Sum_probs=122.8
Q ss_pred HhhhccchhhHhcHHHHHHHcCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHH
Q 047115 306 FQQVTRVNVISFNAPVLFMTIKVRKSTSLLMSAVVPDGIGTVSTILPMILADKLGRTVLFLLGGIQILVSQVMIRSIMAA 385 (522)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (522)
+....+.+......|.+.++.|.+..+.+ +..+...++..++.++.|+++||+|||+.+..+.....++..++...
T Consensus 13 ~~~~~~~~~~~~~lp~~~~~~~~s~~~~~-~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~--- 88 (392)
T PRK10473 13 LLYPAGIDMYLVGLPRIAADLNASEAQLH-IAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLA--- 88 (392)
T ss_pred HHHHHHHHHHhhhHHHHHHHhCCCHHHHH-HHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHh---
Confidence 45555555666778888899999999888 88888899999999999999999999999998887777776655442
Q ss_pred hhCCCCCCcchhhHHHHHHHHHHHHhhhccccccccccccccCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Q 047115 386 QLGDHGGFNIGYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLVAQTFLAMLCHFKAG 465 (522)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~ 465 (522)
+..+...+...+.+.+.+. ..+....+..|.+|+++|+++.++.+....++..++|.+.+.+.+..+|.
T Consensus 89 ----------~~~~~~~~~~~l~g~~~~~-~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~ 157 (392)
T PRK10473 89 ----------ETSSLFLAGRFLQGIGAGC-CYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQ 157 (392)
T ss_pred ----------CcHHHHHHHHHHHHhhhhH-HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChH
Confidence 1122222233333333222 22344566689999999999999999999999999999888877777764
Q ss_pred -hhHHHHHHHHHHHHHHHhhccCCCC
Q 047115 466 -VFFCFGGWVAFMTTFVHFFLPETKY 490 (522)
Q Consensus 466 -~~~~~~~~~~i~~~~~~~~~~~~~~ 490 (522)
.+.+.+.+..+..++.....||+++
T Consensus 158 ~~~~~~~~~~~i~~~~~~~~~~~~~~ 183 (392)
T PRK10473 158 SLFYTMAAMGILVLLLSLFILKETRP 183 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 4555555555666666666776543
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.2e-09 Score=116.53 Aligned_cols=177 Identities=17% Similarity=0.107 Sum_probs=127.0
Q ss_pred HHHHHHHH-HhhhccchhhHhcHHHHHHHcCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhhccchHHHHHHHHHHHHHH
Q 047115 298 LVMAILIP-FQQVTRVNVISFNAPVLFMTIKVRKSTSLLMSAVVPDGIGTVSTILPMILADKLGRTVLFLLGGIQILVSQ 376 (522)
Q Consensus 298 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~ 376 (522)
.+...++. +........+..-.|.+.+++|.+..+.. +..+.+.++..++.+..|+++||+|||+.+..+.....++.
T Consensus 7 ~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~~-~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~ 85 (495)
T PRK14995 7 TLVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNELL-WIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLAS 85 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHH-HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 33344444 55555556677778999999999999988 88889999999999999999999999999999988888887
Q ss_pred HHHHHHHHHhhCCCCCCcchhhHHHHHHHHHHHHhhhcccccccccccccc-CchhhhhHHHHHHHHHHHHHHHHHHHHH
Q 047115 377 VMIRSIMAAQLGDHGGFNIGYAYLILFLICVYKAGFAFSRGPLGWLVPSEI-FPLEIRSAGQSITVAVDLLFTFLVAQTF 455 (522)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~-~p~~~r~~~~g~~~~~~~~~~~~~~~~~ 455 (522)
++.... ++.+..++.-.+.+.+.+.. .+.......+. .|+++|+++.|+......++..++|.+.
T Consensus 86 ~~~~~a-------------~~~~~li~~r~l~G~g~~~~-~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lg 151 (495)
T PRK14995 86 LAAAFS-------------PTASWLIATRALLAIGAAMI-VPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVG 151 (495)
T ss_pred HHHHHc-------------CCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 776653 22333343334444443332 22223333344 4789999999999999999999999999
Q ss_pred HHHHHhccch-hhHHHHHHHHHHHHHHHhhccCCC
Q 047115 456 LAMLCHFKAG-VFFCFGGWVAFMTTFVHFFLPETK 489 (522)
Q Consensus 456 ~~~~~~~g~~-~~~~~~~~~~i~~~~~~~~~~~~~ 489 (522)
+.+.++.+|. .|++...+..+..++..+++|+.+
T Consensus 152 g~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~ 186 (495)
T PRK14995 152 GILLEHFYWGSVFLINVPIVLVVMGLTARYVPRQA 186 (495)
T ss_pred HHhhccCChHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 9999988864 454444455555555566667643
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.13 E-value=9.4e-10 Score=110.78 Aligned_cols=142 Identities=15% Similarity=0.135 Sum_probs=128.6
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhcccc-ccccccccCcccchhhhhhhhhhhhhhhhcccccccchhhhhH
Q 047115 58 KFDSQLLAAFTSSLYIAGLIAFLFASKVTRAFGRKA-SILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCCYS 136 (522)
Q Consensus 58 ~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 136 (522)
|.++.+.++..+...++..++.++.|++.||+|||+ .+. .+..+..
T Consensus 207 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~---------------------------------~~~~~~~ 253 (352)
T cd06174 207 GLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLL---------------------------------IGLLLAA 253 (352)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH---------------------------------HHHHHHH
Confidence 568899999999999999999999999999999999 888 8999999
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHhhhhhhhccccccccccccccccccccCCcc-hhHHHHHHHHHHHHHHHHHHHHhhh
Q 047115 137 NHCSIGGAAFNIYMLILGCVLLGVGIGFTSQSIQRFNQFAYMILLSSNFETTRL-SHIDFLLQISICYLILSANLLNYGT 215 (522)
Q Consensus 137 ~~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~-g~~~~~~~~~~~lG~~~~~~~~~~l 215 (522)
++.+.....++.+.+.+..++.|++.+...+....+ +.| ..|+++ ++..++.+....+|..+++.+.+.+
T Consensus 254 i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--------~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l 324 (352)
T cd06174 254 LGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTL--------ASE-LAPPEARGTASGLFNTFGSLGGALGPLLAGLL 324 (352)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHhccchhHHHH--------HHh-hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999 999 899888 9999999999999999999999888
Q ss_pred hccCCCCchHHHHHhhHHHHHHHHHHhcc
Q 047115 216 QKIKGSWGWRISLAMAAVPASILTIGSLF 244 (522)
Q Consensus 216 ~~~~~~~gwr~~f~i~~~~~~~~~~~~~~ 244 (522)
.+. .+|+..+.+.++..++..+...+
T Consensus 325 ~~~---~~~~~~~~~~~~~~~i~~i~~~~ 350 (352)
T cd06174 325 LDT---GGYGGVFLILAALALLAALLLLL 350 (352)
T ss_pred hcc---cCcchHHHHHHHHHHHHHHHhee
Confidence 754 47999999988877776665544
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.5e-10 Score=116.45 Aligned_cols=162 Identities=12% Similarity=0.045 Sum_probs=117.6
Q ss_pred hhhHhcHHHHHHHcCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC
Q 047115 313 NVISFNAPVLFMTIKVRKSTSLLMSAVVPDGIGTVSTILPMILADKLGRTVLFLLGGIQILVSQVMIRSIMAAQLGDHGG 392 (522)
Q Consensus 313 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (522)
..+....|.+.+++|++..+.+ +..+...++..++.++.|+++||+|||+.+..+..+..++.++.....
T Consensus 12 ~~~~~~~~~~~~~~g~s~~~~g-~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~--------- 81 (379)
T TIGR00881 12 KNFALAMPYLVEEIGLSKTDLG-LLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFST--------- 81 (379)
T ss_pred HhhhhhhHHHHHHhCCCHhHHH-HHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhh---------
Confidence 4455667887788899999999 999999999999999999999999999999998888877777665531
Q ss_pred CcchhhHHHHHHHHHHHHhhhccccccccccccccCchhhhhHHHHHHHHHHHHHHHHHHH-HHHHHHHhccch-hhHHH
Q 047115 393 FNIGYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLVAQ-TFLAMLCHFKAG-VFFCF 470 (522)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~g~~-~~~~~ 470 (522)
..+..++...+.+.+.+. ..+....+..|.+|+++|+++.++.+....++..+++. +.+.+.+..++. .+.+.
T Consensus 82 ----~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (379)
T TIGR00881 82 ----SLWVMAALWALNGIFQGM-GWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVP 156 (379)
T ss_pred ----hHHHHHHHHHHHHhhccc-cCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHH
Confidence 223333333343333333 34455567789999999999999999999999999994 555555555654 34444
Q ss_pred HHHHHHHHHHHHhhccCCC
Q 047115 471 GGWVAFMTTFVHFFLPETK 489 (522)
Q Consensus 471 ~~~~~i~~~~~~~~~~~~~ 489 (522)
+.+..+..++.+++.+|++
T Consensus 157 ~~~~~~~~~~~~~~~~~~~ 175 (379)
T TIGR00881 157 GIIAIIVSLICFLLLRDSP 175 (379)
T ss_pred HHHHHHHHHHHheeeCCCc
Confidence 5455555555666666543
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.13 E-value=6.7e-10 Score=112.80 Aligned_cols=157 Identities=13% Similarity=0.049 Sum_probs=113.8
Q ss_pred chhhHhcHHHHHHHcCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Q 047115 312 VNVISFNAPVLFMTIKVRKSTSLLMSAVVPDGIGTVSTILPMILADKLGRTVLFLLGGIQILVSQVMIRSIMAAQLGDHG 391 (522)
Q Consensus 312 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (522)
........|.+..+.+.+..+.+ +..+...++..++.++.|+++||+|||+.+..+..+..++..+.......
T Consensus 15 ~~~~~~~~~~~~~~~~~s~~~~g-~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~------ 87 (365)
T TIGR00900 15 TAITQVALPLYVLAGTGSASVLS-LAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALL------ 87 (365)
T ss_pred HHHHHHHHHHHHHHhhccHHHHH-HHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHc------
Confidence 34455566777888888988888 88999999999999999999999999999998887776666655544210
Q ss_pred CCcchhhHHHHHHHHHHHHhhhccccccccccccccCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHH
Q 047115 392 GFNIGYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLVAQTFLAMLCHFKAGVFFCFG 471 (522)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 471 (522)
+....+...+...+.+.+.+. ..+....+..|.+|+++|++..++.+....++..+++.+.+.+.++.+|...+...
T Consensus 88 --~~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~ 164 (365)
T TIGR00900 88 --GGLNIWQVYVLAGILAIAQAF-FTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVD 164 (365)
T ss_pred --CCCcHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 011233334444444444333 23444567789999999999999999999999999999999998888865544443
Q ss_pred HHHHHHH
Q 047115 472 GWVAFMT 478 (522)
Q Consensus 472 ~~~~i~~ 478 (522)
++..+..
T Consensus 165 ~~~~~~~ 171 (365)
T TIGR00900 165 AVGFAIS 171 (365)
T ss_pred HHHHHHH
Confidence 4333333
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=1e-09 Score=113.92 Aligned_cols=169 Identities=12% Similarity=0.005 Sum_probs=119.0
Q ss_pred HhhhccchhhHhcHHHHHHHcCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHH
Q 047115 306 FQQVTRVNVISFNAPVLFMTIKVRKSTSLLMSAVVPDGIGTVSTILPMILADKLGRTVLFLLGGIQILVSQVMIRSIMAA 385 (522)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (522)
+.............|.+.++.|+++.+.+ +..+...++..++.++.|+++||+|||+.+..+..+..++.++....
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~g-~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~--- 100 (406)
T PRK11551 25 LLEGLDLQSAGVAAPRMAQEFGLDVAQMG-WAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQA--- 100 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHh---
Confidence 44444444556667888889999999999 89999999999999999999999999999998877766665544432
Q ss_pred hhCCCCCCcchhhHHHHHHHHHHHHhhhccccccccccccccCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Q 047115 386 QLGDHGGFNIGYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLVAQTFLAMLCHFKAG 465 (522)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~ 465 (522)
.+.+..++..++.+.+.+.. .+....+..|.+|+++|+++.++.+....++..+++.+.+.+.+..+|.
T Consensus 101 ----------~~~~~~~~~~~l~G~~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 169 (406)
T PRK11551 101 ----------WDFPSLLVARLLTGVGLGGA-LPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAAWR 169 (406)
T ss_pred ----------ccHHHHHHHHHHHHhhHHHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCHH
Confidence 12233333344444433332 3344566789999999999999999999999999988887777766654
Q ss_pred h-hHHHHHHHHHHHHHHHhhccCCC
Q 047115 466 V-FFCFGGWVAFMTTFVHFFLPETK 489 (522)
Q Consensus 466 ~-~~~~~~~~~i~~~~~~~~~~~~~ 489 (522)
. +.+.+.+..+...+...++||+.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~l~~~~ 194 (406)
T PRK11551 170 HIFYVGGVGPLLLVPLLMRWLPESR 194 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 4 44444333444444455567653
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.3e-08 Score=103.26 Aligned_cols=264 Identities=11% Similarity=0.035 Sum_probs=173.8
Q ss_pred CCchhHHH-HHHHHHHHHHHHHHHHHHHhhhhhccccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhhhhH
Q 047115 58 KFDSQLLA-AFTSSLYIAGLIAFLFASKVTRAFGRKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCCYS 136 (522)
Q Consensus 58 ~~~~~~~~-~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 136 (522)
|++..++. -+.-...-.+....++...++|..|.|++++ .+.+...
T Consensus 36 n~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpvii---------------------------------l~~~~~i 82 (412)
T PF01770_consen 36 NFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVII---------------------------------LQALSYI 82 (412)
T ss_pred CCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHH---------------------------------HHHHHHH
Confidence 67777653 4555666778888999999999999999999 8999888
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHhhhhhhhccccccccccccccccccccCCcc-hhHHHHHHHHHHHHHHHHHHHHhhh
Q 047115 137 NHCSIGGAAFNIYMLILGCVLLGVGIGFTSQSIQRFNQFAYMILLSSNFETTRL-SHIDFLLQISICYLILSANLLNYGT 215 (522)
Q Consensus 137 ~~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~-g~~~~~~~~~~~lG~~~~~~~~~~l 215 (522)
+...+..+.++...+-+..++.|++.+. ..+-.+| +-. ..++++ .++.+...++..+|..++.++|-.+
T Consensus 83 ~t~~lll~~~sv~~mq~~q~~yg~~~a~-evay~sY--------iys-~v~~~~yq~vts~~raa~l~g~~~s~~lgQll 152 (412)
T PF01770_consen 83 ITWLLLLFGTSVLAMQLMQFFYGLATAA-EVAYYSY--------IYS-VVDKEHYQKVTSYTRAATLVGRFISSLLGQLL 152 (412)
T ss_pred HHHHHHHHHCcHHHHHHHHHHHHHHHHH-HHHHHHH--------hee-ecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8889999999999999999999999875 4555555 777 778888 9999999999999999999998877
Q ss_pred hccCCCCchHHHHHhhHHHHHHHHHHhcccCCChHHHHHhCCCHHH-------HHHHHHHHc-------CCc----chHH
Q 047115 216 QKIKGSWGWRISLAMAAVPASILTIGSLFLPETPNSIIQRNKDHQK-------AEEILQIVR-------NTT----DVKA 277 (522)
Q Consensus 216 ~~~~~~~gwr~~f~i~~~~~~~~~~~~~~lpesp~~~~~~~~~~~~-------~~~~~~~~~-------~~~----~~~~ 277 (522)
.... ..+++...++......+.++..+++|..++...-+++..++ .++..+... ..+ +.+.
T Consensus 153 vs~~-~~sy~~L~~isl~~~~~a~~~~~fLP~~~~S~~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (412)
T PF01770_consen 153 VSFG-GVSYFQLNYISLASVSLALLIALFLPMPKRSLFFHRKPPAEQDANESESDKMNESPESSSSTEKSPSTESSSRKS 231 (412)
T ss_pred HHhc-CCCHHHHHHHHHHHHHHHHHHHHHcCCCCcccceeccCccccccccccccccccccccccccccCcccccchHHH
Confidence 7543 24677777777776777777778888766532211110000 000000000 000 1111
Q ss_pred HHHHHHHHHHhhccccchhHHHHHHHHH-HhhhccchhhHhcHHHHHHHc---CCCCchhhHHHhHHHHHHHHHHHHhHH
Q 047115 278 ELDDIIRASSKIIHRIYRPQLVMAILIP-FQQVTRVNVISFNAPVLFMTI---KVRKSTSLLMSAVVPDGIGTVSTILPM 353 (522)
Q Consensus 278 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~g 353 (522)
.++.+.++.++.. ..+.++...+. ....+++..+..|...+.++. +-...-.+ ..-....+.+.++++..|
T Consensus 232 ~l~~l~~~~~~~y----~~~~ll~WSlWWa~atcgy~qv~nYvQ~LW~~v~~~~~~~vYNG-~VeA~~tllgA~~al~~g 306 (412)
T PF01770_consen 232 VLRLLWKDFKSCY----SNPRLLLWSLWWAFATCGYYQVINYVQSLWDTVPPSDNESVYNG-AVEAASTLLGAIAALLAG 306 (412)
T ss_pred HHHHHHHHHHHHh----cCchHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCCCCCcccch-HHHHHHHHHHHHHHHHHh
Confidence 2222222222333 22333333333 445556666777888877776 22233344 666777788888888899
Q ss_pred HHhhhccchHHHHHHHH
Q 047115 354 ILADKLGRTVLFLLGGI 370 (522)
Q Consensus 354 ~l~dr~g~~~~~~~~~~ 370 (522)
++..++.+..-+.++..
T Consensus 307 ~v~~~w~~~~~l~l~~~ 323 (412)
T PF01770_consen 307 YVKVNWDRWGELALGVF 323 (412)
T ss_pred HhhcchHHHHHHHHHHH
Confidence 88666666554444433
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.12 E-value=6.3e-10 Score=118.17 Aligned_cols=169 Identities=17% Similarity=0.150 Sum_probs=123.6
Q ss_pred HhhhccchhhHhcHHHHHHHcCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHH
Q 047115 306 FQQVTRVNVISFNAPVLFMTIKVRKSTSLLMSAVVPDGIGTVSTILPMILADKLGRTVLFLLGGIQILVSQVMIRSIMAA 385 (522)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (522)
+.............|.+.++.|.+..+.+ +..+...++..++.++.|+++||+|||+.+..+..+..++.++....
T Consensus 12 ~~~~~~~~~~~~~~p~~~~~~g~s~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~--- 87 (485)
T TIGR00711 12 FMAVLDSTIVNVAIPTIAGDLGSSLSQVQ-WVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVA--- 87 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCChhhhh-HHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhCc---
Confidence 44444445566778888899999999998 89999999999999999999999999999998888877776665442
Q ss_pred hhCCCCCCcchhhHHHHHHHHHHHHhhhccccccccccccccCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Q 047115 386 QLGDHGGFNIGYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLVAQTFLAMLCHFKAG 465 (522)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~ 465 (522)
++.+..++...+.+.+.+ ...+....+..|.+|+++|+++.++......++..++|.+.+.+.++.+|.
T Consensus 88 ----------~~~~~l~~~~~~~G~~~~-~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~ 156 (485)
T TIGR00711 88 ----------PNLELMIIFRVIQGFGGG-PLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWR 156 (485)
T ss_pred ----------CCHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCce
Confidence 122233333333333333 234455577789999999999999999999999999999999998888754
Q ss_pred -hhHHHHHHHHHHHHHHHhhccCCC
Q 047115 466 -VFFCFGGWVAFMTTFVHFFLPETK 489 (522)
Q Consensus 466 -~~~~~~~~~~i~~~~~~~~~~~~~ 489 (522)
.+++.+.+..+..++..+..|+++
T Consensus 157 ~~f~~~~~~~~~~~~~~~~~~~~~~ 181 (485)
T TIGR00711 157 WIFLINVPIGIIVVVVAFFILPRDK 181 (485)
T ss_pred ehhhhhhHHHHHHHHHHHHHcCCcc
Confidence 344444444444444555566543
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.6e-09 Score=110.83 Aligned_cols=145 Identities=12% Similarity=0.051 Sum_probs=119.1
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhhhhHH
Q 047115 58 KFDSQLLAAFTSSLYIAGLIAFLFASKVTRAFGRKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCCYSN 137 (522)
Q Consensus 58 ~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 137 (522)
|.++.+.+++.+.......++.++.|++.||+|||+.+. .+.++..+
T Consensus 231 g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~---------------------------------~~~~~~~~ 277 (375)
T TIGR00899 231 GLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLML---------------------------------LAALAGVA 277 (375)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHH---------------------------------HHHHHHHH
Confidence 568888888888887788889999999999999999988 76666666
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHhhhhhhhccccccccccccccccccccCCcchhHHHHHHHHHHHHHHHHHHHHhhhhc
Q 047115 138 HCSIGGAAFNIYMLILGCVLLGVGIGFTSQSIQRFNQFAYMILLSSNFETTRLSHIDFLLQISICYLILSANLLNYGTQK 217 (522)
Q Consensus 138 ~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~lG~~~~~~~~~~l~~ 217 (522)
..+...+.++.+.+.+.+++.|++.|...+....+ +.| ..|+++++..++.+....+|..+++.+++.+.+
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~--------~~~-~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~~~~ 348 (375)
T TIGR00899 278 FYTGLAADNSLWALLMLQLLNAIFIGILAGIGMLY--------FQD-LMPGRAGAATTLYTNTGRVGWIIAGSVGGILAE 348 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHH-hCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555667788888889999999999888887777 889 777655999999999999999999999988875
Q ss_pred cCCCCchHHHHHhhHHHHHHHHHHhcccCC
Q 047115 218 IKGSWGWRISLAMAAVPASILTIGSLFLPE 247 (522)
Q Consensus 218 ~~~~~gwr~~f~i~~~~~~~~~~~~~~lpe 247 (522)
.. ||+..|.+.++..++..+...+++|
T Consensus 349 ~~---g~~~~~~~~~~~~~~~~~~~~~~~~ 375 (375)
T TIGR00899 349 RW---SYHAVYWFAIVMLIVALFCLLLIKD 375 (375)
T ss_pred hc---cchhHHHHHHHHHHHHHHHHheecC
Confidence 43 7999999888877776666655543
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.8e-09 Score=113.00 Aligned_cols=177 Identities=15% Similarity=0.056 Sum_probs=123.9
Q ss_pred HHHHHHHHHHhhhccchhhHhcHHHHHHHcCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhhccchHHHHHHHHHHHHHH
Q 047115 297 QLVMAILIPFQQVTRVNVISFNAPVLFMTIKVRKSTSLLMSAVVPDGIGTVSTILPMILADKLGRTVLFLLGGIQILVSQ 376 (522)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~ 376 (522)
..+......+........+..+.|.+.++.|.+..+.+ +..+...++..++.++.|+++||+|||+.+..+..+..++.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~ 89 (471)
T PRK10504 11 QLWIVAFGFFMQSLDTTIVNTALPSMAQSLGESPLHMH-MVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGS 89 (471)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHH
Confidence 33333333355555556677789999999999999888 77788888889999999999999999999988777766666
Q ss_pred HHHHHHHHHhhCCCCCCcchhhHHHHHHHHHHHHhhhccccccccccccccCchhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 047115 377 VMIRSIMAAQLGDHGGFNIGYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLVAQTFL 456 (522)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~ 456 (522)
+..... ...+..++...+.+.+.+. ..+....+..|.+|+++|+++.|+.+....++..++|.+.+
T Consensus 90 ~~~~~~-------------~~~~~l~~~~~l~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g 155 (471)
T PRK10504 90 LFCALS-------------GTLNELLLARVLQGVGGAM-MVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGG 155 (471)
T ss_pred HHHHHh-------------CCHHHHHHHHHHHHhhhHH-HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 544332 1222333334444444333 23445566689999999999999999999999999999999
Q ss_pred HHHHhccch-hhHHHHHHHHHHHHHHHhhccCC
Q 047115 457 AMLCHFKAG-VFFCFGGWVAFMTTFVHFFLPET 488 (522)
Q Consensus 457 ~~~~~~g~~-~~~~~~~~~~i~~~~~~~~~~~~ 488 (522)
.+.++.+|. .+.+...+..+..+......|+.
T Consensus 156 ~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~ 188 (471)
T PRK10504 156 LLVEYASWHWIFLINIPVGIIGAIATLMLMPNY 188 (471)
T ss_pred HHHhhccHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 999988864 44444444444444444444543
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.1e-09 Score=113.12 Aligned_cols=171 Identities=11% Similarity=0.103 Sum_probs=118.3
Q ss_pred HHHHHHHHHhhhccchhhHhcHHHHHH-HcCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhhc-cchHHHHHHHHHHHHH
Q 047115 298 LVMAILIPFQQVTRVNVISFNAPVLFM-TIKVRKSTSLLMSAVVPDGIGTVSTILPMILADKL-GRTVLFLLGGIQILVS 375 (522)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~ 375 (522)
.+..+...+.....++.+..+.|.++. +.|++..+++ ...........++.+++|+++||+ |||+.+.++.+...++
T Consensus 11 l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~-~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg 89 (493)
T PRK15462 11 IYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAY-ELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIG 89 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHH
Confidence 333333335555566777788888874 5799999998 888888888899999999999999 9999999988888877
Q ss_pred HHHHHHHHHHhhCCCCCCcchhhHHHHHHHHHHHHhhhccccccccccccccCchh--hhhHHHHHHHHHHHHHHHHHHH
Q 047115 376 QVMIRSIMAAQLGDHGGFNIGYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFPLE--IRSAGQSITVAVDLLFTFLVAQ 453 (522)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~--~r~~~~g~~~~~~~~~~~~~~~ 453 (522)
.+++.... .......+...+...+.+.. .+...++.+|.+|++ .|.++.++..+..+++++++|.
T Consensus 90 ~lll~~~~------------~~~~~~~l~l~li~iG~G~~-~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~ 156 (493)
T PRK15462 90 HVVLGASE------------IHPSFLYLSLAIIVCGYGLF-KSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPI 156 (493)
T ss_pred HHHHHHhh------------cchhHHHHHHHHHHHhcccc-cccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHH
Confidence 66554210 11111122222222333322 233346678999976 7999999999999999999999
Q ss_pred HHHHHHHhccchhhHHHHHHHHHHHHHHH
Q 047115 454 TFLAMLCHFKAGVFFCFGGWVAFMTTFVH 482 (522)
Q Consensus 454 ~~~~~~~~~g~~~~~~~~~~~~i~~~~~~ 482 (522)
+.+.+.++.+|...+..+++..+.+++.+
T Consensus 157 l~g~L~~~~Gw~~~F~iaaigm~l~li~~ 185 (493)
T PRK15462 157 ACGYAQEEYSWAMGFGLAAVGMIAGLVIF 185 (493)
T ss_pred HHHHHHhhhChHHHHHHHHHHHHHHHHHH
Confidence 99999988886554444444444444443
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=3.2e-09 Score=111.97 Aligned_cols=163 Identities=11% Similarity=0.014 Sum_probs=107.3
Q ss_pred hHhcHHHHHHHcCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCc
Q 047115 315 ISFNAPVLFMTIKVRKSTSLLMSAVVPDGIGTVSTILPMILADKLGRTVLFLLGGIQILVSQVMIRSIMAAQLGDHGGFN 394 (522)
Q Consensus 315 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (522)
+....|.+.++ |++..+.+ +..+...++..++.++.|+++||+|||+++..+..+..++.+.+..... .
T Consensus 48 ~~~~~p~l~~~-g~s~~~~g-~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~---------~ 116 (452)
T PRK11273 48 FALAMPYLVEQ-GFSRGDLG-FALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPW---------A 116 (452)
T ss_pred HHHhhHHHHHc-CCCHHHHH-HHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhc---------c
Confidence 44566766666 99999999 8899999999999999999999999999999888877777665554310 0
Q ss_pred chhhHHHHHHHHHHHHhhhccccccccccccccCchhhhhHHHHHHHHHHHHHHHHHHHHHH-HHHHhccch-hhHHHHH
Q 047115 395 IGYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLVAQTFL-AMLCHFKAG-VFFCFGG 472 (522)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~g~~-~~~~~~~ 472 (522)
....+...+...+.+.+.+....+.. ....|.+|+++|+++.|+.+....+++.+.+++.+ ......+|. .+++.+.
T Consensus 117 ~~~~~~~~~~~~l~gi~~g~~~~~~~-~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~ 195 (452)
T PRK11273 117 TSSIAVMFVLLFLCGWFQGMGWPPCG-RTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAF 195 (452)
T ss_pred cccHHHHHHHHHHHHHHHhccchHHH-HHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 11222233333333444443333333 44578899999999999998888887655444432 222233543 4455555
Q ss_pred HHHHHHHHHHhhccCCC
Q 047115 473 WVAFMTTFVHFFLPETK 489 (522)
Q Consensus 473 ~~~i~~~~~~~~~~~~~ 489 (522)
+.++..++..+++||+.
T Consensus 196 ~~~~~~~l~~~~~~~~~ 212 (452)
T PRK11273 196 AAILVALFAFAMMRDTP 212 (452)
T ss_pred HHHHHHHHHHHHccCCH
Confidence 55555556666667653
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.8e-09 Score=115.19 Aligned_cols=168 Identities=11% Similarity=0.052 Sum_probs=119.9
Q ss_pred HhhhccchhhHhcHHHHHHHcCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHH
Q 047115 306 FQQVTRVNVISFNAPVLFMTIKVRKSTSLLMSAVVPDGIGTVSTILPMILADKLGRTVLFLLGGIQILVSQVMIRSIMAA 385 (522)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (522)
+.............|.+.+++|++..+.+ ...+...++..++.++.|+++||+|||+.+..+.....++.+++....
T Consensus 30 ~~~~~~~~~~~~~~~~i~~~~~~s~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~-- 106 (496)
T PRK03893 30 LLDGFDFVLITLVLTEVQGEFGLTTVQAA-SLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGTLACGFAP-- 106 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHh--
Confidence 44444445556667888888999999988 888888999999999999999999999999988877777766655431
Q ss_pred hhCCCCCCcchhhHHHHHHHHHHHHhhhccccccccccccccCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Q 047115 386 QLGDHGGFNIGYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLVAQTFLAMLCHFKAG 465 (522)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~ 465 (522)
+.+...+...+.+.+.+. ..+....+..|.+|+++|+++.++......++..+++.+.+.+.++.+|.
T Consensus 107 -----------~~~~l~~~~~l~G~~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~ 174 (496)
T PRK03893 107 -----------GYWTLFIARLVIGMGMAG-EYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWGWR 174 (496)
T ss_pred -----------HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHH
Confidence 122333333333333332 23334466689999999999999999999999999999999998888876
Q ss_pred hhHHHHHHHHHHHHHHHhhccCC
Q 047115 466 VFFCFGGWVAFMTTFVHFFLPET 488 (522)
Q Consensus 466 ~~~~~~~~~~i~~~~~~~~~~~~ 488 (522)
..+.++.+..+..++.....||.
T Consensus 175 ~~f~~~~~~~~~~~~~~~~~p~~ 197 (496)
T PRK03893 175 ALFFIGILPIIFALWLRKNLPEA 197 (496)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCc
Confidence 55555444444333333444543
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=3.2e-09 Score=109.77 Aligned_cols=181 Identities=13% Similarity=0.069 Sum_probs=121.1
Q ss_pred hhHHHHHHHHHHhhhccchhhHhcHHHHHHHcCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhhccchHHHHHHHHHHHH
Q 047115 295 RPQLVMAILIPFQQVTRVNVISFNAPVLFMTIKVRKSTSLLMSAVVPDGIGTVSTILPMILADKLGRTVLFLLGGIQILV 374 (522)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~ 374 (522)
++..+....................|.+.++.|.++.+.+ +..+...++..++.++.|+++||+|||+.+..+.....+
T Consensus 7 ~~~l~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~~-~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~ 85 (394)
T PRK11652 7 VNLLFMLVLLVAVGQMAQTIYVPAIADMARDLNVREGAVQ-AVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFIL 85 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhCCCHHHHH-HHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHH
Confidence 3344434444333333333444556778889999999999 889999999999999999999999999999888777766
Q ss_pred HHHHHHHHHHHhhCCCCCCcchhhHHHHHHHHHHHHhhhccccccccccccccCchhhhhHHHHHHHHHHHHHHHHHHHH
Q 047115 375 SQVMIRSIMAAQLGDHGGFNIGYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLVAQT 454 (522)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~ 454 (522)
+.+..... ++.+..++...+.+.+.+. ..+....+..|.++.+.++.+.+..+....++..++|.+
T Consensus 86 ~~~~~~~~-------------~~~~~l~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i 151 (394)
T PRK11652 86 GTLVALFA-------------HSLTVLIAASAIQGLGTGV-GGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLI 151 (394)
T ss_pred HHHHHHHH-------------ccHHHHHHHHHHHHhhhhH-HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66554432 1122223333333332222 223344556788888999999999998889999999999
Q ss_pred HHHHHHhccchh-hHHHHHHHHHHHHHHHhhccCCCC
Q 047115 455 FLAMLCHFKAGV-FFCFGGWVAFMTTFVHFFLPETKY 490 (522)
Q Consensus 455 ~~~~~~~~g~~~-~~~~~~~~~i~~~~~~~~~~~~~~ 490 (522)
.+.+.++.+|.. +.+.+....+......++.||+++
T Consensus 152 ~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 188 (394)
T PRK11652 152 GGLLTTLFGWRACYLFLLLLGAGVTFSMARWMPETRP 188 (394)
T ss_pred HHHHHhccChHHHHHHHHHHHHHHHHHHHHhCCccCc
Confidence 998888777654 444444444444445556677543
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=3.1e-09 Score=109.55 Aligned_cols=169 Identities=11% Similarity=-0.034 Sum_probs=121.4
Q ss_pred HhhhccchhhHhcHHHHHHHcCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHH
Q 047115 306 FQQVTRVNVISFNAPVLFMTIKVRKSTSLLMSAVVPDGIGTVSTILPMILADKLGRTVLFLLGGIQILVSQVMIRSIMAA 385 (522)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (522)
+.............|.+.++.|++..+.+ +..+...++..+++++.|++.||+|||+.+..+..+..++.++....
T Consensus 13 ~~~~~~~~~~~~~l~~~~~~~g~s~~~~g-~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~--- 88 (382)
T PRK10091 13 FGLGMAEFGIMGVLTELAHDVGISIPAAG-HMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLS--- 88 (382)
T ss_pred HHHHhhHHHHHhChHHHHHHcCCCHHHHh-HHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHh---
Confidence 33333344556677888899999999998 89999999999999999999999999999999888888777665543
Q ss_pred hhCCCCCCcchhhHHHHHHHHHHHHhhhccccccccccccccCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Q 047115 386 QLGDHGGFNIGYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLVAQTFLAMLCHFKAG 465 (522)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~ 465 (522)
++.+...+...+.+.+.+.. .+.......|.+|+++|+++.++......++..+++.+.+.+.+..+|.
T Consensus 89 ----------~~~~~l~~~r~l~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr 157 (382)
T PRK10091 89 ----------SSYLMLAIGRLVSGFPHGAF-FGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWR 157 (382)
T ss_pred ----------CcHHHHHHHHHHHHhhhHHH-HHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHH
Confidence 22233333333333333322 2333455678899999999999999989999999999988888877764
Q ss_pred -hhHHHHHHHHHHHHHHHhhccCCC
Q 047115 466 -VFFCFGGWVAFMTTFVHFFLPETK 489 (522)
Q Consensus 466 -~~~~~~~~~~i~~~~~~~~~~~~~ 489 (522)
.+.+.+.+..+..+..++.+||.+
T Consensus 158 ~~f~~~~~~~~~~~~~~~~~lp~~~ 182 (382)
T PRK10091 158 YTFLLIAVFNIAVLASIYFWVPDIR 182 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 444444444444444555677754
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.09 E-value=5.6e-10 Score=116.54 Aligned_cols=145 Identities=13% Similarity=0.113 Sum_probs=119.2
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhhhhHH
Q 047115 58 KFDSQLLAAFTSSLYIAGLIAFLFASKVTRAFGRKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCCYSN 137 (522)
Q Consensus 58 ~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 137 (522)
+.+..+.+++.++..++..++.+++|+++||+|||+.+. .+.++.++
T Consensus 258 ~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~---------------------------------~~~~l~~~ 304 (420)
T PRK09528 258 EQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALL---------------------------------LAGTIMAV 304 (420)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhH---------------------------------HHHHHHHH
Confidence 346678899999999999999999999999999999999 88888888
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHhhhhhhhccccccccccccccccccccCCcc-hhHHHH-HHHHHHHHHHHHHHHHhhh
Q 047115 138 HCSIGGAAFNIYMLILGCVLLGVGIGFTSQSIQRFNQFAYMILLSSNFETTRL-SHIDFL-LQISICYLILSANLLNYGT 215 (522)
Q Consensus 138 ~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~-g~~~~~-~~~~~~lG~~~~~~~~~~l 215 (522)
+.++.++++|.+.+++.+++.|++.+...+....+ +.+ ..|++. +...+. ++.+..+|..+++.+.+.+
T Consensus 305 ~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~--------~~~-~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l 375 (420)
T PRK09528 305 RIIGSGFATGPLEVSILKLLHAFEVPFLLVGVFKY--------ITL-NFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNL 375 (420)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHH--------HHH-HcCccceeeeeeehHHHHHHHHHHHHHHHHHHH
Confidence 88888889999999999999999988887777777 888 788877 776554 6777889999999999888
Q ss_pred hccCCCCchHHHHHhhHHHHHHHH-HHhcccCC
Q 047115 216 QKIKGSWGWRISLAMAAVPASILT-IGSLFLPE 247 (522)
Q Consensus 216 ~~~~~~~gwr~~f~i~~~~~~~~~-~~~~~lpe 247 (522)
.+.. |||..|.+.++..++.. +....+++
T Consensus 376 ~~~~---G~~~~f~~~~~~~~i~~~~~~~~~~~ 405 (420)
T PRK09528 376 YDSI---GFQGTYLILGGIVLLFTLISVFTLSG 405 (420)
T ss_pred HHhh---CchHHHHHHHHHHHHHHHHHHHHhcC
Confidence 8654 79999988666554433 33334443
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=6.3e-09 Score=107.84 Aligned_cols=166 Identities=11% Similarity=0.038 Sum_probs=114.8
Q ss_pred hhhccchhhHhcHHHHHHHcCCCCchh-----hHHHhHHHHHHHHHHHHhHHHHhhhccchHHHHHHHHHHHHHHHHHHH
Q 047115 307 QQVTRVNVISFNAPVLFMTIKVRKSTS-----LLMSAVVPDGIGTVSTILPMILADKLGRTVLFLLGGIQILVSQVMIRS 381 (522)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~g~~~~~~-----~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~ 381 (522)
...........+.|.+.++.|.+..+. + ...+...+...++.++.|+++||+|||+.+..+.....++.+++..
T Consensus 25 ~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~ 103 (408)
T PRK09874 25 LTGAAFSLVMPFLPLYVEQLGVTGHSALNMWSG-LVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMVLMGL 103 (408)
T ss_pred HHHHHHHHhhhhHHHHHHHhCCccchhHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHHHHHHHH
Confidence 333344455667888888888886553 5 6777888899999999999999999999998887777666655443
Q ss_pred HHHHhhCCCCCCcchhhHHHHHHHHHHHHhhhccccccccccccccCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047115 382 IMAAQLGDHGGFNIGYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLVAQTFLAMLCH 461 (522)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 461 (522)
. .+.+...+...+.+.+. +..+.......+.+|+++|+++.++.+....++..+++.+.+.+.+.
T Consensus 104 ~-------------~~~~~~~~~~~~~g~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~ 168 (408)
T PRK09874 104 A-------------QNIWQFLILRALLGLLG--GFVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADS 168 (408)
T ss_pred H-------------hhHHHHHHHHHHHHHhh--hhHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 11222333333333222 22334445557889999999999999999999999999999998887
Q ss_pred ccch-hhHHHHHHHHHHHHHHHhhccCC
Q 047115 462 FKAG-VFFCFGGWVAFMTTFVHFFLPET 488 (522)
Q Consensus 462 ~g~~-~~~~~~~~~~i~~~~~~~~~~~~ 488 (522)
.++. .+.+.+.+..+..+...++.+|+
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (408)
T PRK09874 169 YGLRPVFFITASVLFLCFLVTLFCIREN 196 (408)
T ss_pred hCHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 7754 44555554455555555556654
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=5.1e-09 Score=109.15 Aligned_cols=167 Identities=13% Similarity=0.077 Sum_probs=117.8
Q ss_pred hccchhhHhcHHHHHHHcCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 047115 309 VTRVNVISFNAPVLFMTIKVRKSTSLLMSAVVPDGIGTVSTILPMILADKLGRTVLFLLGGIQILVSQVMIRSIMAAQLG 388 (522)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (522)
.........-.|.+.++++.+..... ...+.+.++..++.++.|+++||+|||+++..+..+..++.+.....
T Consensus 29 ~~~~~~~~p~l~~i~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a------ 101 (413)
T PRK15403 29 YLTTDLIQPGIINVVRDFNADVSLAP-ASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFT------ 101 (413)
T ss_pred HHHHHhhccCHHHHHHHhCCCHHHHH-HHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHc------
Confidence 33334444555666788899999988 88888999999999999999999999999998877777666655442
Q ss_pred CCCCCcchhhHHHHHHHHHHHHhhhccccccccccccccCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccch-hh
Q 047115 389 DHGGFNIGYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLVAQTFLAMLCHFKAG-VF 467 (522)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~ 467 (522)
++.+..++.-.+.+.+.+. ..+....+..|.+|+++|+++.++.+....++..++|.+.+.+.++.+|. .|
T Consensus 102 -------~~~~~l~~~r~l~Gi~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f 173 (413)
T PRK15403 102 -------TSMTQFLIARFIQGTSICF-IATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLF 173 (413)
T ss_pred -------CCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 1222333333333333322 23344566689999999999999999999999999999988888877764 45
Q ss_pred HHHHHHHHHHHHHHHhhccCCCC
Q 047115 468 FCFGGWVAFMTTFVHFFLPETKY 490 (522)
Q Consensus 468 ~~~~~~~~i~~~~~~~~~~~~~~ 490 (522)
.+.+....+..+..++.+||+++
T Consensus 174 ~~~~~~~~i~~~~~~~~lp~~~~ 196 (413)
T PRK15403 174 AIIAVMGLIAFVGLLLAMPETVK 196 (413)
T ss_pred HHHHHHHHHHHHHHHHhCCCCcc
Confidence 45444444444444556787643
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=4.8e-09 Score=108.56 Aligned_cols=154 Identities=10% Similarity=0.001 Sum_probs=109.2
Q ss_pred HhhhccchhhHhcHHHHHHHcCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHH
Q 047115 306 FQQVTRVNVISFNAPVLFMTIKVRKSTSLLMSAVVPDGIGTVSTILPMILADKLGRTVLFLLGGIQILVSQVMIRSIMAA 385 (522)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (522)
+........+....|.+.++.|++..+.+ ...+...++..++.++.|++.||+|||+.+..+.....++.++....
T Consensus 17 ~~~~~~~~~~g~~~~~i~~~~~~s~~~~g-~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~l~~~~--- 92 (394)
T PRK03699 17 ALTGALVIVTGMVMGPIAEYFNLPVSSMS-NTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMILAVAGLMFS--- 92 (394)
T ss_pred HHHHHHHHHHhhhhHHHHHHhCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc---
Confidence 33333345566677888899999999999 88888999999999999999999999999988887777766655442
Q ss_pred hhCCCCCCcchhhHHHHHHHHHHHHhhhccccccccccccccCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-hccc
Q 047115 386 QLGDHGGFNIGYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLVAQTFLAMLC-HFKA 464 (522)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~g~ 464 (522)
++.+...+...+.+.+.+.... ....+..|.+|+++|+.+.+..+....+++.++|.+.+.+.+ ..+|
T Consensus 93 ----------~~~~~~~~~~~l~G~~~g~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw 161 (394)
T PRK03699 93 ----------HSLALFSIAMFVLGVVSGITMS-IGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEW 161 (394)
T ss_pred ----------chHHHHHHHHHHHHHhhHhhcc-chhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccH
Confidence 1223333333444444443332 334566799999999999999888888888899988887765 3455
Q ss_pred hh-hHHHHHHH
Q 047115 465 GV-FFCFGGWV 474 (522)
Q Consensus 465 ~~-~~~~~~~~ 474 (522)
.. +...+...
T Consensus 162 ~~~f~~~~~~~ 172 (394)
T PRK03699 162 YWVYACIGLVY 172 (394)
T ss_pred HHHHHHHHHHH
Confidence 44 33334333
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.9e-09 Score=109.91 Aligned_cols=136 Identities=10% Similarity=-0.043 Sum_probs=114.4
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhhhhHH
Q 047115 58 KFDSQLLAAFTSSLYIAGLIAFLFASKVTRAFGRKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCCYSN 137 (522)
Q Consensus 58 ~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 137 (522)
+.++.+.+.+.+...++..++.++.|+++||+|||+.+. .+..+.++
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~---------------------------------~~~~~~~~ 282 (377)
T TIGR00890 236 GLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMS---------------------------------IVFGISAV 282 (377)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh---------------------------------HHHHHHHH
Confidence 567888899999999999999999999999999999999 88888888
Q ss_pred HHHHHhhhhhh--HHHHHHHHHHHhhhhhhhccccccccccccccccccccCCcc-hhHHHHHHHHHHHHHHHHHHHHhh
Q 047115 138 HCSIGGAAFNI--YMLILGCVLLGVGIGFTSQSIQRFNQFAYMILLSSNFETTRL-SHIDFLLQISICYLILSANLLNYG 214 (522)
Q Consensus 138 ~~~~~~~a~~~--~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~-g~~~~~~~~~~~lG~~~~~~~~~~ 214 (522)
+.++..+.++. ..++...++.|++.|...+....+ +.| ..|+++ ++..++.+....+|..+++.+.+.
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~--------~~~-~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~ 353 (377)
T TIGR00890 283 GMAAMLFIPMLNDVLFLATVALVFFTWGGTISLFPSL--------VSD-IFGPANSAANYGFLYTAKAVAGIFGGLIASH 353 (377)
T ss_pred HHHHHHHcccchhHHHHHHHHHHHHHhccchhccHHH--------HHH-HhhhhhhhhHhHHHHHHHHHHHHHHHHHHHH
Confidence 88777766643 334566788888888777777777 899 888888 999999999999999999999988
Q ss_pred hhccCCCCchHHHHHhhHHHHHHH
Q 047115 215 TQKIKGSWGWRISLAMAAVPASIL 238 (522)
Q Consensus 215 l~~~~~~~gwr~~f~i~~~~~~~~ 238 (522)
+.+. .||++.|.+.++..++.
T Consensus 354 l~~~---~g~~~~f~~~~~~~~~~ 374 (377)
T TIGR00890 354 ALTE---IGFEYTFIVTGAFALTS 374 (377)
T ss_pred HHhh---hchhhHHHHHHHHHHHh
Confidence 8754 47999998877666554
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=6.2e-09 Score=108.10 Aligned_cols=170 Identities=18% Similarity=0.123 Sum_probs=118.6
Q ss_pred HhhhccchhhHhcHHHHHHHcCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHH
Q 047115 306 FQQVTRVNVISFNAPVLFMTIKVRKSTSLLMSAVVPDGIGTVSTILPMILADKLGRTVLFLLGGIQILVSQVMIRSIMAA 385 (522)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (522)
+........+....|.+.+++|.+..+.+ ...+...++..++.++.|+++||+|||+.+..+.....++.+.....
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~-~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~--- 98 (406)
T PRK15402 23 FATYIANDMIQPGMLAVVEDFNAGAEWVP-TSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLA--- 98 (406)
T ss_pred HHHHhhhhhHhcchHHHHHHhCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHH---
Confidence 44344445555566777789999999888 88889999999999999999999999999988877777766655442
Q ss_pred hhCCCCCCcchhhHHHHHHHHHHHHhhhccccccccccccccCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Q 047115 386 QLGDHGGFNIGYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLVAQTFLAMLCHFKAG 465 (522)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~ 465 (522)
+..+.......+.+.+.+. ..+.......|.+|++.|.++.++......++..++|.+.+.+.++.+|.
T Consensus 99 ----------~~~~~l~~~~~l~G~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~ 167 (406)
T PRK15402 99 ----------QSIEQFTLLRFLQGIGLCF-IGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLPWR 167 (406)
T ss_pred ----------ccHHHHHHHHHHHHhHhhh-HHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcc
Confidence 1122223332332333222 22344566679999999999999988888888899999988888877754
Q ss_pred -hhHHHHHHHHHHHHHHHhhccCCCC
Q 047115 466 -VFFCFGGWVAFMTTFVHFFLPETKY 490 (522)
Q Consensus 466 -~~~~~~~~~~i~~~~~~~~~~~~~~ 490 (522)
.+.+.+.+..+..+..++..||+++
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (406)
T PRK15402 168 GMFVLFAALAALSFFGLWRAMPETAG 193 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCc
Confidence 4555555555555545556676643
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.3e-09 Score=114.90 Aligned_cols=161 Identities=14% Similarity=0.076 Sum_probs=111.2
Q ss_pred HhcHHHHHHHcCCC--------CchhhHHHhHHHHHHHHHHHHhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHhh
Q 047115 316 SFNAPVLFMTIKVR--------KSTSLLMSAVVPDGIGTVSTILPMILADKLGRTVLFLLGGIQILVSQVMIRSIMAAQL 387 (522)
Q Consensus 316 ~~~~~~~~~~~g~~--------~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (522)
....|....+.+++ ..+.+ +..+...++..++.++.|+++||+|||+.+..+..+..++.++.....
T Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~---- 122 (481)
T TIGR00879 48 GGALALPAFEFKFTSANSDSYSSSLWG-LVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAA---- 122 (481)
T ss_pred hhhhhcHHHHHhcCCcccCCCChhHHH-HHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhc----
Confidence 33444444555555 77788 889999999999999999999999999999988888777776664431
Q ss_pred CCCCCCcchhhHHHHHHHHHHHHhhhccccccccccccccCchhhhhHHHHHHHHHHHHHHHHHHHHH---HHHHHhccc
Q 047115 388 GDHGGFNIGYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLVAQTF---LAMLCHFKA 464 (522)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~---~~~~~~~g~ 464 (522)
.....+..++...+.+.+.+.. .+....+.+|.+|+++|+++.++.+....+|..+++.+. ....+..+|
T Consensus 123 ------~~~~~~~~~~~r~l~G~~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w 195 (481)
T TIGR00879 123 ------FALSVEMLIVGRVLLGIGVGIA-SALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGW 195 (481)
T ss_pred ------cccchHHHHHHHHHHHhhhhHH-HhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccH
Confidence 1122223344444444444433 334556778999999999999999999999999999887 443344566
Q ss_pred hhhHHHHHHHHHHHHHHHhhccCC
Q 047115 465 GVFFCFGGWVAFMTTFVHFFLPET 488 (522)
Q Consensus 465 ~~~~~~~~~~~i~~~~~~~~~~~~ 488 (522)
...+.+.++..+..++..+++||+
T Consensus 196 ~~~f~~~~~~~~~~~~~~~~l~~~ 219 (481)
T TIGR00879 196 RIPLGLQLIPAGLLFLGLFFLPES 219 (481)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCC
Confidence 544444555555555556667775
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.8e-09 Score=110.68 Aligned_cols=161 Identities=17% Similarity=0.135 Sum_probs=118.5
Q ss_pred hhHhcHHHHHHHcCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC
Q 047115 314 VISFNAPVLFMTIKVRKSTSLLMSAVVPDGIGTVSTILPMILADKLGRTVLFLLGGIQILVSQVMIRSIMAAQLGDHGGF 393 (522)
Q Consensus 314 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (522)
......|.+.++.|++..+.+ ...+...++..++.++.|+++||+|||+.+..+..+..++...+....
T Consensus 9 ~~~p~~~~~~~~~~~s~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~---------- 77 (377)
T PRK11102 9 MYLPALPVIAADFGVSAGSVQ-MTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQ---------- 77 (377)
T ss_pred HHhccHHHHHHHhCCCHHHHH-HHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHc----------
Confidence 344566788888999999999 888999999999999999999999999999988888777777665431
Q ss_pred cchhhHHHHHHHHHHHHhhhccccccccccccccCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccch-hhHHHHH
Q 047115 394 NIGYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLVAQTFLAMLCHFKAG-VFFCFGG 472 (522)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~ 472 (522)
..+...+...+.+.+.+. ..+....+..|.+|+++|+++.++.+....++..++|.+.+.+.++.+|. .+.+.+.
T Consensus 78 ---~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~ 153 (377)
T PRK11102 78 ---TIDQLIYMRFLHGLAAAA-ASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLAL 153 (377)
T ss_pred ---cHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHH
Confidence 122233333333333332 23344466689999999999999999999999999999999998887764 4455555
Q ss_pred HHHHHHHHHHhhccCCC
Q 047115 473 WVAFMTTFVHFFLPETK 489 (522)
Q Consensus 473 ~~~i~~~~~~~~~~~~~ 489 (522)
+..+..+...++.||++
T Consensus 154 ~~~~~~~~~~~~~~~~~ 170 (377)
T PRK11102 154 AAILAAALVFFFIPETL 170 (377)
T ss_pred HHHHHHHHHHHhCCccC
Confidence 55555555556666653
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.1e-09 Score=110.63 Aligned_cols=161 Identities=18% Similarity=0.155 Sum_probs=114.8
Q ss_pred hhhHhcHH-HHHHHcCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Q 047115 313 NVISFNAP-VLFMTIKVRKSTSLLMSAVVPDGIGTVSTILPMILADKLGRTVLFLLGGIQILVSQVMIRSIMAAQLGDHG 391 (522)
Q Consensus 313 ~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (522)
.......| .+.++.|.+..+.+ +..+...++..++.++.|+++||+|||+.+..+..+..++.++..+.
T Consensus 13 ~~~~~~~~~~~~~~~~~s~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~--------- 82 (352)
T PF07690_consen 13 SIISPALPLYLAEELGLSPSQIG-LLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFA--------- 82 (352)
T ss_dssp HHHHHHHH-HHHCCSTTTSHCHH-HHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHHHHHccCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhh---------
Confidence 33455566 55678899999999 89999999999999999999999999999998888888884444321
Q ss_pred CCcchhhHHHHHHHHHHHHhhhccccccccccccccCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccch-hhHHH
Q 047115 392 GFNIGYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLVAQTFLAMLCHFKAG-VFFCF 470 (522)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~ 470 (522)
.+.+..++..++.+.+.+. ..+....+..|.+|+++|+++.++.+....++..+++.+.+.+.++.+|. .+.+.
T Consensus 83 ----~~~~~~~~~~~l~g~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~ 157 (352)
T PF07690_consen 83 ----SNFWLLLIARFLLGIGSGF-FSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLIS 157 (352)
T ss_dssp ----CCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHH
T ss_pred ----hhHHHHhhhcccccccccc-ccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccccccccccc
Confidence 1122344444444444433 34455567789999999999999999999999999999999888777754 45555
Q ss_pred HHHHHHHHHHHHhhccCC
Q 047115 471 GGWVAFMTTFVHFFLPET 488 (522)
Q Consensus 471 ~~~~~i~~~~~~~~~~~~ 488 (522)
+.+..+..++...+.+++
T Consensus 158 ~~~~~~~~il~~~~~~~~ 175 (352)
T PF07690_consen 158 AILSLIAAILFILFLPEP 175 (352)
T ss_dssp HHHHHHHHHHHHCCC---
T ss_pred cchhhhhhhhHhhhhhhc
Confidence 555555544433444443
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.04 E-value=5.5e-09 Score=107.03 Aligned_cols=161 Identities=13% Similarity=-0.064 Sum_probs=113.0
Q ss_pred hhHhcHHHHHHHcCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC
Q 047115 314 VISFNAPVLFMTIKVRKSTSLLMSAVVPDGIGTVSTILPMILADKLGRTVLFLLGGIQILVSQVMIRSIMAAQLGDHGGF 393 (522)
Q Consensus 314 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (522)
.+....|.+.+++|++..+.+ +..+...++..++++..|+++||+|||+++..+......+.. ....
T Consensus 9 ~~~~~lp~i~~~~~~s~~~~g-~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~-~~~~----------- 75 (368)
T TIGR00903 9 TFSPVLSLVAEDIDVSKEELG-LLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAG-RLLD----------- 75 (368)
T ss_pred HHHhhHHHHHHHhCcCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHH-HHHH-----------
Confidence 345667888889999999999 888999999999999999999999999876544333333221 1111
Q ss_pred cchhhHHHHHHHHHHHHhhhccccccccccccccCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchh-hHHHHH
Q 047115 394 NIGYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLVAQTFLAMLCHFKAGV-FFCFGG 472 (522)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~ 472 (522)
. ...+..++.-.+.+.+.+. .+......+|.+|+++|+++.++.+....++..+++.+.+.+.++.+|.. +.+.+.
T Consensus 76 ~-~~~~~l~~~R~l~G~g~~~--~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~ 152 (368)
T TIGR00903 76 P-FNYEWLLACQLLAALGQPF--LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAA 152 (368)
T ss_pred h-ccHHHHHHHHHHHHhHhHH--HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHH
Confidence 0 1222333333343333332 22223444799999999999999999999999999999999988888765 444466
Q ss_pred HHHHHHHHHHhhccCCCC
Q 047115 473 WVAFMTTFVHFFLPETKY 490 (522)
Q Consensus 473 ~~~i~~~~~~~~~~~~~~ 490 (522)
+..+..++.++++||.++
T Consensus 153 l~~~~~~~~~~~lp~~p~ 170 (368)
T TIGR00903 153 VAAAGIILVLAALPALPF 170 (368)
T ss_pred HHHHHHHHHHHHcCCCCC
Confidence 666666667777887543
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=9.6e-09 Score=109.09 Aligned_cols=176 Identities=11% Similarity=-0.069 Sum_probs=111.7
Q ss_pred chhHHHHHHHHHHhhhccchhhHhcHHHHHHHcCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhhccchHHHHHHHHHHH
Q 047115 294 YRPQLVMAILIPFQQVTRVNVISFNAPVLFMTIKVRKSTSLLMSAVVPDGIGTVSTILPMILADKLGRTVLFLLGGIQIL 373 (522)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~ 373 (522)
.++.........+...........+.|.+.+++|++..+.+ ...+...++..++.++.|+++||+|||+.+..+.+...
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gls~~~~g-~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~ 112 (476)
T PLN00028 34 HMRAFHLSWISFFTCFVSTFAAAPLLPIIRDNLNLTKSDIG-NAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTA 112 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 33444444333333333344455667778889999999988 77888888999999999999999999999888777776
Q ss_pred HHHHHHHHHHHHhhCCCCCCcchhhHHHHHHHHHHHHhhhccccccccccccccCchhhhhHHHHHHHHHHHHHHHHHHH
Q 047115 374 VSQVMIRSIMAAQLGDHGGFNIGYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLVAQ 453 (522)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~ 453 (522)
++.++..... ..+...+..++.+.+.+. ..+ ...+++|.+|+++|+.+.|+.+....++..+++.
T Consensus 113 ~~~~~~~~~~-------------s~~~l~~~r~l~G~~~~~-~~~-~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~ 177 (476)
T PLN00028 113 PAVFCMSLVS-------------SATGFIAVRFFIGFSLAT-FVS-CQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQL 177 (476)
T ss_pred HHHHHHHHhc-------------CHHHHHHHHHHHHHHHHh-hHH-HHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHH
Confidence 6655554431 122222222233333222 222 2345579999999999999998888777777766
Q ss_pred HHHHHHH----h-----ccc-hhhHHHHHHHHHHHHHHHhhc
Q 047115 454 TFLAMLC----H-----FKA-GVFFCFGGWVAFMTTFVHFFL 485 (522)
Q Consensus 454 ~~~~~~~----~-----~g~-~~~~~~~~~~~i~~~~~~~~~ 485 (522)
+.+.+.. . .+| ..+.+.+.+.++.+++.+++.
T Consensus 178 ~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~~~ 219 (476)
T PLN00028 178 LMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLTLG 219 (476)
T ss_pred HHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHc
Confidence 6654432 1 244 345555555555544444443
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.03 E-value=6.1e-09 Score=110.47 Aligned_cols=164 Identities=12% Similarity=0.099 Sum_probs=118.5
Q ss_pred HhhhccchhhHhcHHHHHHH---cCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhh-ccchHHHHHHHHHHHHHHHHHHH
Q 047115 306 FQQVTRVNVISFNAPVLFMT---IKVRKSTSLLMSAVVPDGIGTVSTILPMILADK-LGRTVLFLLGGIQILVSQVMIRS 381 (522)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~~~~~~~~~~~~~~~~~~ 381 (522)
+....+++.+..+.|.|+++ .|++..+++ .......++..++.+++|+++|| +|||+.+.++..+..++.+++..
T Consensus 20 ~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag-~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~ 98 (475)
T TIGR00924 20 LWERFSYYGMQGILAVYLVQQAGLGFSQEQAF-IIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAM 98 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHH-HHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHh
Confidence 55566667777888888865 799999999 89999999999999999999999 89999999999888888776654
Q ss_pred HHHHhhCCCCCCcchhhHHHHHHHHHHHHhhhccccccccccccccCchhh---hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 047115 382 IMAAQLGDHGGFNIGYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFPLEI---RSAGQSITVAVDLLFTFLVAQTFLAM 458 (522)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~---r~~~~g~~~~~~~~~~~~~~~~~~~~ 458 (522)
. ...+...+...+.+.+.+. ..+....+.+|.+|++. |+++.++.+...++|..++|.+.+.+
T Consensus 99 ~-------------~~~~~~~~~~~l~g~g~g~-~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l 164 (475)
T TIGR00924 99 S-------------IYPDLIFYGLGTIAVGSGL-FKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVI 164 (475)
T ss_pred c-------------ccHhHHHHHHHHHHhcccc-ccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHH
Confidence 2 1122222233333333332 23344466678887653 88899999999999999999999999
Q ss_pred HHhccchhhHHHHHHHHHHHHHHHhh
Q 047115 459 LCHFKAGVFFCFGGWVAFMTTFVHFF 484 (522)
Q Consensus 459 ~~~~g~~~~~~~~~~~~i~~~~~~~~ 484 (522)
.++.++...+...++..+.+++.+.+
T Consensus 165 ~~~~g~~~~f~~~~~~~~~~~l~~~~ 190 (475)
T TIGR00924 165 AENYGYHVGFNLAAVGMVIGLLTFFA 190 (475)
T ss_pred HHhcChHHHHHHHHHHHHHHHHHHHH
Confidence 99888655444444444444444433
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=3.1e-09 Score=110.81 Aligned_cols=167 Identities=13% Similarity=0.006 Sum_probs=114.4
Q ss_pred chhhHhcHHHHHHHcCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Q 047115 312 VNVISFNAPVLFMTIKVRKSTSLLMSAVVPDGIGTVSTILPMILADKLGRTVLFLLGGIQILVSQVMIRSIMAAQLGDHG 391 (522)
Q Consensus 312 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (522)
........|.+.++.+.+..+.+ +..+...++..+++++.|+++||+|||+.+..+.....++...+......
T Consensus 33 ~~~~~~~~~~~~~~~~~s~~~~g-~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~------ 105 (417)
T PRK10489 33 LGLLGVAVPVQIQMMTGSTLQVG-LSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFL------ 105 (417)
T ss_pred HHHHHHHHHHHHHHHHCCHHHHH-HHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHc------
Confidence 34556677888888888888888 99999999999999999999999999998887766666655544332110
Q ss_pred CCcchhhHHHHHHHHHHHHhhhccccccccccccccCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHH
Q 047115 392 GFNIGYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLVAQTFLAMLCHFKAGVFFCFG 471 (522)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 471 (522)
..+..+...+...+.+.+.+... +.......|..|+++|+++.++.+....++..+++.+.+.+.+..++...+.+.
T Consensus 106 --~~~~~~~l~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~ 182 (417)
T PRK10489 106 --PEPSLLAIYLLGLWDGFFGSLGV-TALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLA 182 (417)
T ss_pred --CCCcHHHHHHHHHHHHHHHHHHH-HHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHH
Confidence 01122223333333333333222 233355679999999999999999999999999999999998877754444444
Q ss_pred HHHHHHHHHHHhhccCC
Q 047115 472 GWVAFMTTFVHFFLPET 488 (522)
Q Consensus 472 ~~~~i~~~~~~~~~~~~ 488 (522)
++..+...+....+|++
T Consensus 183 ~~~~~~~~~~~~~l~~~ 199 (417)
T PRK10489 183 AAGTFITLLPLLRLPAL 199 (417)
T ss_pred HHHHHHHHHHHHhCCCC
Confidence 44444445555556654
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.1e-08 Score=104.47 Aligned_cols=140 Identities=14% Similarity=0.022 Sum_probs=101.1
Q ss_pred HhhhccchhhHhcHHH-HHHHcCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHH
Q 047115 306 FQQVTRVNVISFNAPV-LFMTIKVRKSTSLLMSAVVPDGIGTVSTILPMILADKLGRTVLFLLGGIQILVSQVMIRSIMA 384 (522)
Q Consensus 306 ~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~ 384 (522)
+..+........+.|. +.++.|++..+.+ +..+...++..++.++.|+++||+|||+.+..+.....++.+++....
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~- 88 (366)
T TIGR00886 11 FLSFSVWFAFSPLAVQMIKDDLGLSTAQLG-NLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAV- 88 (366)
T ss_pred HHHHHHHHHhHHhhhHHHHHHhCCCHHHhh-HhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHh-
Confidence 3334444556677785 5578899999999 899999999999999999999999999999998888888776665531
Q ss_pred HhhCCCCCCcchhhHHHHHHHHHHHHhhhccccccccccccccCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047115 385 AQLGDHGGFNIGYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLVAQTFLAMLC 460 (522)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~ 460 (522)
...+...+...+.+.+.+ .. +....+.+|.+|+++|+++.++......++..+++.+.+.+..
T Consensus 89 -----------~~~~~~~~~~~~~g~~~~-~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~ 151 (366)
T TIGR00886 89 -----------QSYSVLLLLRLFIGIAGG-SF-ASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIG 151 (366)
T ss_pred -----------hhHHHHHHHHHHHHHhch-hh-HhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 022333333333333322 22 2334566899999999999999988888877777777666554
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=3.3e-09 Score=109.85 Aligned_cols=140 Identities=12% Similarity=-0.049 Sum_probs=116.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhhhhHHHHHHH
Q 047115 63 LLAAFTSSLYIAGLIAFLFASKVTRAFGRKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCCYSNHCSIG 142 (522)
Q Consensus 63 ~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 142 (522)
+.++..+.+.++..++.++.|++.||+|||+.+. .+..+.+++.++.
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~---------------------------------~~~~~~~~~~~~~ 296 (399)
T PRK05122 250 GAALALTLFGVAFVGARLLFGNLINRLGGLRVAI---------------------------------VSLLVEILGLLLL 296 (399)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHH---------------------------------HHHHHHHHHHHHH
Confidence 3456677888899999999999999999999988 8888888888888
Q ss_pred hhhhhhHHHHHHHHHHHhhhhhhhccccccccccccccccccccCCcc-hhHHHHHHHHHHHHHHHHHHHHhhhhccCCC
Q 047115 143 GAAFNIYMLILGCVLLGVGIGFTSQSIQRFNQFAYMILLSSNFETTRL-SHIDFLLQISICYLILSANLLNYGTQKIKGS 221 (522)
Q Consensus 143 ~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~-g~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~ 221 (522)
.+.++.+.+++.+++.|++.+...+..... ..| ..|+++ ++..++++....+|..+++.+.+.+.+..
T Consensus 297 ~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~--------~~~-~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~-- 365 (399)
T PRK05122 297 WLAPSPWMALIGAALTGFGFSLVFPALGVE--------AVK-RVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWF-- 365 (399)
T ss_pred HHhccHHHHHHHHHHHHHhHHHHHHHHHHH--------HHH-hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--
Confidence 888888888889999999999888877777 788 788888 99999999999999988888887777543
Q ss_pred CchHHHHHhhHHHHHHHHHHhcccCC
Q 047115 222 WGWRISLAMAAVPASILTIGSLFLPE 247 (522)
Q Consensus 222 ~gwr~~f~i~~~~~~~~~~~~~~lpe 247 (522)
||+..|.+.++..++..+..+++++
T Consensus 366 -g~~~~~~~~~~~~~~~~~~~~~~~~ 390 (399)
T PRK05122 366 -GYPSIFLAAALAALLGLALTWLLYR 390 (399)
T ss_pred -CHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 7999998877776666655555544
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.6e-09 Score=114.34 Aligned_cols=141 Identities=13% Similarity=0.058 Sum_probs=112.8
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHhhhhh--ccccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhhhh
Q 047115 58 KFDSQLLAAFTSSLYIAGLIAFLFASKVTRAF--GRKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCCY 135 (522)
Q Consensus 58 ~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~--Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 135 (522)
|.+..+.+++.+...++..+++++.|+++||. ++|+... ...+.++.
T Consensus 272 g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~-------------------------------~~~~~~~~ 320 (455)
T TIGR00892 272 GVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYL-------------------------------FSFALLFN 320 (455)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHH-------------------------------HHHHHHHH
Confidence 67889999999999999999999999999974 3343333 00334444
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHhhhhhhhccccccccccccccccccccCCcc-hhHHHHHHHHHHHHHHHHHHHHhh
Q 047115 136 SNHCSIGGAAFNIYMLILGCVLLGVGIGFTSQSIQRFNQFAYMILLSSNFETTRL-SHIDFLLQISICYLILSANLLNYG 214 (522)
Q Consensus 136 ~~~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~-g~~~~~~~~~~~lG~~~~~~~~~~ 214 (522)
+++.++...+++++.+++.+++.|++.+...+....+ +.| ..|+++ ++..++++....+|..+||.+++.
T Consensus 321 ~l~~ll~~~~~~~~~~~i~~~~~G~~~g~~~~~~~~~--------~~~-~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~ 391 (455)
T TIGR00892 321 GLTHLLCALAGDYTGLVIYCIFFGLSFGSVGALLFEV--------LMD-LVGAQRFSSAVGLVTIVECCAVLIGPPLAGR 391 (455)
T ss_pred HHHHHHHHHhchHHHHHHHHHHHHHHhchHHHHHHHH--------HHH-HhhHHHHhhHHhHHHHHHHHHHHccccceee
Confidence 5555566677889999999999999999888888888 999 888888 999999999999999999999998
Q ss_pred hhccCCCCchHHHHHhhHHHHHHHHH
Q 047115 215 TQKIKGSWGWRISLAMAAVPASILTI 240 (522)
Q Consensus 215 l~~~~~~~gwr~~f~i~~~~~~~~~~ 240 (522)
+.+..+ +|++.|++.++..++..+
T Consensus 392 l~~~~g--~~~~~f~~~~~~~li~~~ 415 (455)
T TIGR00892 392 LVDATK--NYKYIFYASGSIVVSAGL 415 (455)
T ss_pred eehhcC--CcchHHHHhhHHHHHHHH
Confidence 876543 699999887766555443
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.8e-08 Score=107.81 Aligned_cols=151 Identities=19% Similarity=0.151 Sum_probs=104.1
Q ss_pred CCchhhHHHhHHHHHHHHHHHHhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcchhhHHHHHHHHHH
Q 047115 329 RKSTSLLMSAVVPDGIGTVSTILPMILADKLGRTVLFLLGGIQILVSQVMIRSIMAAQLGDHGGFNIGYAYLILFLICVY 408 (522)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (522)
+..+.+ ++.....++.+++.++.|+++||+|||+.+..+.++..++.++..... +. .+....+..++.-.+.
T Consensus 54 ~~~~~~-~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~-----~~--~~~~~~~~~~~~r~l~ 125 (502)
T TIGR00887 54 PSSVSA-AVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSP-----GS--SPKSVMATLCFWRFWL 125 (502)
T ss_pred hHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHcc-----Cc--ccchHHHHHHHHHHHH
Confidence 344555 788888999999999999999999999999888888777766555431 00 0001123344444444
Q ss_pred HHhhhccccccccccccccCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------hccch
Q 047115 409 KAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLVAQTFLAMLC-----------------------HFKAG 465 (522)
Q Consensus 409 ~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~-----------------------~~g~~ 465 (522)
+.+.+.. .+....+.+|.+|++.|+++.++.+....++..+++.+...+.. ..+|.
T Consensus 126 G~~~g~~-~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR 204 (502)
T TIGR00887 126 GVGIGGD-YPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWR 204 (502)
T ss_pred HHHHhhh-hHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHH
Confidence 4444433 34455788999999999999999999999988888877654432 12465
Q ss_pred hhHHHHHHHHHHHHHHHhhccCC
Q 047115 466 VFFCFGGWVAFMTTFVHFFLPET 488 (522)
Q Consensus 466 ~~~~~~~~~~i~~~~~~~~~~~~ 488 (522)
..+.++++..+...+..+++||+
T Consensus 205 ~~~~~~~ip~~i~~~~~~~lpES 227 (502)
T TIGR00887 205 ILIGFGAVPALLALYFRLTIPET 227 (502)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCC
Confidence 55566665555556666778986
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.00 E-value=3.9e-09 Score=110.90 Aligned_cols=162 Identities=10% Similarity=-0.016 Sum_probs=109.9
Q ss_pred hHhcHHHHHHHcCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCc
Q 047115 315 ISFNAPVLFMTIKVRKSTSLLMSAVVPDGIGTVSTILPMILADKLGRTVLFLLGGIQILVSQVMIRSIMAAQLGDHGGFN 394 (522)
Q Consensus 315 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (522)
+....|.+. +.|++..+.+ +..+...++..++.++.|+++||+|||+.+..+..+..++.++...... .
T Consensus 46 ~~~~~p~~~-~~g~s~~~~g-~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~---------~ 114 (438)
T TIGR00712 46 FALAMPYLV-EQGFSKGELG-FALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPW---------A 114 (438)
T ss_pred HHhhhHHHH-HcCCCHhHhH-HHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhcccc---------c
Confidence 344556544 4699999999 8999999999999999999999999999888877777766655443210 0
Q ss_pred chhhHHHHHHHHHHHHhhhccccccccccccccCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-hccchh-hHHHHH
Q 047115 395 IGYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLVAQTFLAMLC-HFKAGV-FFCFGG 472 (522)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~g~~~-~~~~~~ 472 (522)
....+...+...+.+.+.+....+. .....|.+|+++|+++.|+.+....+++.+++.+.+...+ +.+|.. +.+.+.
T Consensus 115 ~~~~~~l~~~~~l~g~~~g~~~~~~-~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~ 193 (438)
T TIGR00712 115 TSSIAIMFVLLFLNGWFQGMGWPPC-GRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAI 193 (438)
T ss_pred cchHHHHHHHHHHHHHHhhcchHHH-HHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 0112222233333344444333333 3455789999999999999999999999999888776544 345544 444455
Q ss_pred HHHHHHHHHHhhccCC
Q 047115 473 WVAFMTTFVHFFLPET 488 (522)
Q Consensus 473 ~~~i~~~~~~~~~~~~ 488 (522)
+..+..++.++++||+
T Consensus 194 ~~~i~~~~~~~~~~~~ 209 (438)
T TIGR00712 194 CAIIVALFAFAMMRDT 209 (438)
T ss_pred HHHHHHHHHHHhccCC
Confidence 5555555666666664
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.1e-08 Score=106.30 Aligned_cols=143 Identities=10% Similarity=-0.041 Sum_probs=99.8
Q ss_pred cchhhHhcHHHHHHHcCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Q 047115 311 RVNVISFNAPVLFMTIKVRKSTSLLMSAVVPDGIGTVSTILPMILADKLGRTVLFLLGGIQILVSQVMIRSIMAAQLGDH 390 (522)
Q Consensus 311 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (522)
+......+.+.+.++.|++..+.+ ...+...++..++.++.|++.||+|||+.+..+..+..++.++......
T Consensus 28 ~~~~~~~~~~~~~~~~g~s~~~~g-~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~------ 100 (402)
T TIGR00897 28 GDGLEQGWLSPFLKALGLSPQQSA-SAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGL------ 100 (402)
T ss_pred hhhhHHHhHHHHHHHhCCCHHHhH-HHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhc------
Confidence 333445567777888999999999 8899999999999999999999999999999888877776554322110
Q ss_pred CCCcchhhHHHHHHHHHHHHhhhccccccccccccccCchhhhhHHHHHHHHHHHHHH-HHHHHHHHHHHHhccc
Q 047115 391 GGFNIGYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFT-FLVAQTFLAMLCHFKA 464 (522)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~g~ 464 (522)
...+.+...+...+.+.+.+.. .+.......+.+|+++|+++.|+.++...++. .+++.+.+.+.+..++
T Consensus 101 ---~~~~~~~l~~~~~i~G~g~~~~-~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~ 171 (402)
T TIGR00897 101 ---GHANYPLILLFYGIRGLGYPLF-AYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGE 171 (402)
T ss_pred ---cCccHHHHHHHHHHHHcchHHH-HhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccch
Confidence 1112223333333333333222 22223444678899999999999999988886 5778877777777663
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.3e-08 Score=104.74 Aligned_cols=142 Identities=11% Similarity=-0.064 Sum_probs=106.8
Q ss_pred HhhhccchhhHhcHHHHHHHcCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHH
Q 047115 306 FQQVTRVNVISFNAPVLFMTIKVRKSTSLLMSAVVPDGIGTVSTILPMILADKLGRTVLFLLGGIQILVSQVMIRSIMAA 385 (522)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (522)
+.............|.+.++.|.+..+.+ +..+...++..+++++.|+++||+|||+.+..+.....++.......
T Consensus 16 ~~~~~~~~~~~~~lp~~~~~~~~s~~~~G-~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~~~~~~--- 91 (381)
T PRK03633 16 LLLTLAIAVLNTLVPLWLAQEHLPTWQVG-VVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCAGLGLM--- 91 (381)
T ss_pred HHHHHhhhhHHHHHHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---
Confidence 44555556677889999999999999999 99999999999999999999999999999998888877776665543
Q ss_pred hhCCCCCCcchhhHHHHHHHHHHHHhhhccccccccccccccCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 047115 386 QLGDHGGFNIGYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLVAQTFLAMLCHF 462 (522)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 462 (522)
++.+..++...+.+.+.+.. .+.......+..|+++|+++.+.......++..+++.+.+.+.+..
T Consensus 92 ----------~~~~~l~~~~~l~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~ 157 (381)
T PRK03633 92 ----------VGFWSWLAWRFVAGIGCAMI-WVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTEL 157 (381)
T ss_pred ----------ccHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 12233333334434433322 2232233357788899999999999999999999999988876653
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.7e-08 Score=103.64 Aligned_cols=132 Identities=8% Similarity=0.005 Sum_probs=89.8
Q ss_pred hHhcHHHHHH-HcCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC
Q 047115 315 ISFNAPVLFM-TIKVRKSTSLLMSAVVPDGIGTVSTILPMILADKLGRTVLFLLGGIQILVSQVMIRSIMAAQLGDHGGF 393 (522)
Q Consensus 315 ~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (522)
.....+.+-+ ++|++..+.+ ++.+.+.+...++++..|++.||+|.|+++..+.....+..+....... +
T Consensus 53 ~~~l~~~~~~~~~~ls~~q~g-~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~----~---- 123 (462)
T PRK15034 53 FSAVTVNLNKIGFNFTTDQLF-LLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQ----N---- 123 (462)
T ss_pred HHHHHHHhhhhhcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHc----c----
Confidence 3333444444 6899999999 8888899999999999999999999999998888887777665554310 0
Q ss_pred cchhhHHHHHHHHHHHHhhhccccccccccccccCchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 047115 394 NIGYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLVAQTFLA 457 (522)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~ 457 (522)
..++.+..++...+.+.+ +..+ +.....+++.+|+++||++.|+....++++..+++.+.+.
T Consensus 124 ~~~s~~~lli~r~l~Gig-g~~f-~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~ 185 (462)
T PRK15034 124 PNTPFGIFIVIALLCGFA-GANF-ASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPL 185 (462)
T ss_pred cCCCHHHHHHHHHHHHHH-HHhH-HHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 011222333333333333 3233 3344556899999999999999977777777666555544
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.3e-08 Score=108.14 Aligned_cols=176 Identities=11% Similarity=0.068 Sum_probs=121.1
Q ss_pred hhHHHHHHHHHHhhhccchhhHhcHHHHH-HHcCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhh-ccchHHHHHHHHHH
Q 047115 295 RPQLVMAILIPFQQVTRVNVISFNAPVLF-MTIKVRKSTSLLMSAVVPDGIGTVSTILPMILADK-LGRTVLFLLGGIQI 372 (522)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~~~~~~~~~ 372 (522)
.+..+..+...+..-..++.+..+.+.|+ +++|++..++. ...........+..+++|+++|| +|||+.+..+.++.
T Consensus 13 p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~-~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~ 91 (489)
T PRK10207 13 PRPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAF-ITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVL 91 (489)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHH
Confidence 34444444444555566666777777776 56899998888 77777777777888899999999 99999999999999
Q ss_pred HHHHHHHHHHHHHhhCCCCCCcchhhHHHHHHHHHHHHhhhccccccccccccccCchh--hhhHHHHHHHHHHHHHHHH
Q 047115 373 LVSQVMIRSIMAAQLGDHGGFNIGYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFPLE--IRSAGQSITVAVDLLFTFL 450 (522)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~--~r~~~~g~~~~~~~~~~~~ 450 (522)
.++.+.+.... .......+...+.+.+.+. ..|....+..|.+|++ +|+.+.++.....+++..+
T Consensus 92 ~~g~~~~~~~~------------~~~~ll~~~~~l~~ig~g~-~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~ 158 (489)
T PRK10207 92 AIGYFMTGMSL------------LKPDLIFIALGTIAVGNGL-FKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLI 158 (489)
T ss_pred HHHHHHHHHhc------------cchhHHHHHHHHHHhcccc-ccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHH
Confidence 88887766531 1111122223333333332 3334456778999877 4577899999999999999
Q ss_pred HHHHHHHHHHhccchhhHHHHHHHHHHHHHHHhh
Q 047115 451 VAQTFLAMLCHFKAGVFFCFGGWVAFMTTFVHFF 484 (522)
Q Consensus 451 ~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~ 484 (522)
+|.+.+.+.++.+|...+....+..+..++.+..
T Consensus 159 g~~l~g~l~~~~gw~~~F~i~~i~~~~~~~~~~~ 192 (489)
T PRK10207 159 SLSLAPVIADKFGYSVTYNLCGAGLIIALLVYFA 192 (489)
T ss_pred HHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999988765444444444444444433
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.8e-08 Score=104.57 Aligned_cols=162 Identities=12% Similarity=0.025 Sum_probs=113.9
Q ss_pred cchhhHhcHHHHH-HHcCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q 047115 311 RVNVISFNAPVLF-MTIKVRKSTSLLMSAVVPDGIGTVSTILPMILADKLGRTVLFLLGGIQILVSQVMIRSIMAAQLGD 389 (522)
Q Consensus 311 ~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (522)
+.+....+.+.++ ++.|++..+.+ +......+...+.+++.|+++||+|||+.+..+.....++.+.+...
T Consensus 25 ~~~~~~~~~~~~~~~~~g~s~~~~g-l~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~------- 96 (400)
T PRK11646 25 GFFVVFPLISIRFVDQLGWAAVMVG-IALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIA------- 96 (400)
T ss_pred HHHHHHHHHHHHHHHHhCCcHHHHH-HHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHh-------
Confidence 3344455556555 67899999999 88888889999999999999999999999999888888877765542
Q ss_pred CCCCcchhhHHHHHHHHHHHHhhhccccccccccccccCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccch-hhH
Q 047115 390 HGGFNIGYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLVAQTFLAMLCHFKAG-VFF 468 (522)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~ 468 (522)
++.+...+...+.+.+.+. ..+...++..|.+|+++|+++.|+.+....++..++|.+.+.+. ..++. .+.
T Consensus 97 ------~~~~~l~~~~~l~g~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~ 168 (400)
T PRK11646 97 ------HEPWLLWLSCILSGLGGTL-FDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYDFRLVCA 168 (400)
T ss_pred ------ccHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHH
Confidence 1223333333333333322 23344456679999999999999999999999999999999888 55654 344
Q ss_pred HHHHHHHHHHHHHHhhccCC
Q 047115 469 CFGGWVAFMTTFVHFFLPET 488 (522)
Q Consensus 469 ~~~~~~~i~~~~~~~~~~~~ 488 (522)
+.+....+..++..++.||.
T Consensus 169 ~~~~~~~~~~i~~~~~~~~~ 188 (400)
T PRK11646 169 TGAVLFVLAAAFNAWLLPAY 188 (400)
T ss_pred HHHHHHHHHHHHHHHhCCcc
Confidence 44444444444444555653
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.9e-08 Score=105.32 Aligned_cols=160 Identities=15% Similarity=0.071 Sum_probs=102.7
Q ss_pred CCCCchhhHHHhHHHHHHHHHHHHhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcchhhHHHHHHHH
Q 047115 327 KVRKSTSLLMSAVVPDGIGTVSTILPMILADKLGRTVLFLLGGIQILVSQVMIRSIMAAQLGDHGGFNIGYAYLILFLIC 406 (522)
Q Consensus 327 g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (522)
+.+..+.+ +..+...++..+++++.|+++||+|||+++..+..+..++.+.......... .....+....+..++.-+
T Consensus 51 ~~~~~~~~-~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~R~ 128 (479)
T PRK10077 51 SAANSLLG-FCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFT-SIGPDNTGYVPEFVIYRI 128 (479)
T ss_pred cCChhHHH-HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhccccc-cccccchhHHHHHHHHHH
Confidence 77778888 8899999999999999999999999999999988887776665543210000 000000111222233333
Q ss_pred HHHHhhhccccccccccccccCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH--------HhccchhhHHHHHHHHHHH
Q 047115 407 VYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLVAQTFLAML--------CHFKAGVFFCFGGWVAFMT 478 (522)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~--------~~~g~~~~~~~~~~~~i~~ 478 (522)
+.+.+.+. ..+...++.+|.+|+++|+++.++.+....++..+++.+...+. +..+|...+...++..+..
T Consensus 129 l~G~~~g~-~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~ 207 (479)
T PRK10077 129 IGGIGVGL-ASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLF 207 (479)
T ss_pred HHhhhHhH-HhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHH
Confidence 43344333 33455577789999999999999999888888877765544332 2345544444444444444
Q ss_pred HHHHhhccCCC
Q 047115 479 TFVHFFLPETK 489 (522)
Q Consensus 479 ~~~~~~~~~~~ 489 (522)
.+..+++||+.
T Consensus 208 ~~~~~~l~~s~ 218 (479)
T PRK10077 208 LMLLYFVPETP 218 (479)
T ss_pred HHHHHcCCCCc
Confidence 45566778764
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=98.98 E-value=4.9e-09 Score=110.97 Aligned_cols=150 Identities=15% Similarity=-0.005 Sum_probs=106.6
Q ss_pred HcCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcchhhHHHHHH
Q 047115 325 TIKVRKSTSLLMSAVVPDGIGTVSTILPMILADKLGRTVLFLLGGIQILVSQVMIRSIMAAQLGDHGGFNIGYAYLILFL 404 (522)
Q Consensus 325 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (522)
+.+++..+.+ .+.+...++..++.++.|+++||+|+|+.+..+.++..++.++...... ...+..++.
T Consensus 70 ~~~~s~~~~g-~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~-----------~~~~~l~~~ 137 (465)
T TIGR00894 70 NFKWSGALQG-LILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAG-----------GGIALVVFC 137 (465)
T ss_pred CCCCCHHHhh-HHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHH-----------cCchHHHHH
Confidence 4678888888 8899999999999999999999999999998888777666655433210 112223333
Q ss_pred HHHHHHhhhccccccccccccccCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cchh-hHHHHHHHHHHHHHHH
Q 047115 405 ICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLVAQTFLAMLCHF-KAGV-FFCFGGWVAFMTTFVH 482 (522)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-g~~~-~~~~~~~~~i~~~~~~ 482 (522)
-++.+.+.+. ..+....+.+|.+|+++|+++.|+.+....++..+++.+.+.+.+.. +|.. +.+.+.+..+..++.+
T Consensus 138 r~~~G~~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~ 216 (465)
T TIGR00894 138 RVIQGLAQGS-VSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWF 216 (465)
T ss_pred HHHHHHhccc-chhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHH
Confidence 3343333333 34455567789999999999999999999999999999999998874 7654 4444444444444444
Q ss_pred hhccC
Q 047115 483 FFLPE 487 (522)
Q Consensus 483 ~~~~~ 487 (522)
.+.+|
T Consensus 217 ~~~~~ 221 (465)
T TIGR00894 217 VFPAD 221 (465)
T ss_pred HHhcC
Confidence 44444
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.3e-08 Score=103.61 Aligned_cols=160 Identities=14% Similarity=0.040 Sum_probs=108.8
Q ss_pred hhhHhcHHHHHHHcCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC
Q 047115 313 NVISFNAPVLFMTIKVRKSTSLLMSAVVPDGIGTVSTILPMILADKLGRTVLFLLGGIQILVSQVMIRSIMAAQLGDHGG 392 (522)
Q Consensus 313 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (522)
+......|.+.++.|.+..+.+ +..+...++..++.++.|+++||+|||+.+..+.....++.++....
T Consensus 23 ~~~~p~~~~i~~~~~~s~~~~g-~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~---------- 91 (401)
T PRK11043 23 DMYLPAFKAIQADLQTSASAVS-ASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWV---------- 91 (401)
T ss_pred HHHHhhHHHHHHHHCCCHHHHH-HHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHh----------
Confidence 3333344555678899999999 89999999999999999999999999999988877776666554432
Q ss_pred CcchhhHHHHHHHHHHHHhhhccccccccccccccCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchh-hHHHH
Q 047115 393 FNIGYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLVAQTFLAMLCHFKAGV-FFCFG 471 (522)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~ 471 (522)
...+..++...+.+.+.+.. .+.......|.+|+++++...+..+....++..++|.+.+.+.++.+|.. +.+.+
T Consensus 92 ---~~~~~l~~~~~l~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~ 167 (401)
T PRK11043 92 ---ESAAQLLVLRFVQAVGVCSA-AVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLF 167 (401)
T ss_pred ---cCHHHHHHHHHHHHhhhHHH-HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Confidence 11222232223322222211 22333556789999999999999888888999999999999998888654 44444
Q ss_pred HHHHHHHHHHHhhccCC
Q 047115 472 GWVAFMTTFVHFFLPET 488 (522)
Q Consensus 472 ~~~~i~~~~~~~~~~~~ 488 (522)
.+..+..+. .++.++.
T Consensus 168 ~~~~~~~~~-~~~~~~~ 183 (401)
T PRK11043 168 AITLLLILP-TLRLKPS 183 (401)
T ss_pred HHHHHHHHH-HHHcCCC
Confidence 444443333 3344443
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.8e-08 Score=104.36 Aligned_cols=155 Identities=12% Similarity=0.082 Sum_probs=109.3
Q ss_pred HhcHHHHHHHcCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcc
Q 047115 316 SFNAPVLFMTIKVRKSTSLLMSAVVPDGIGTVSTILPMILADKLGRTVLFLLGGIQILVSQVMIRSIMAAQLGDHGGFNI 395 (522)
Q Consensus 316 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (522)
....+.+.++.+.+..+.+ +......+...+..++.|+++||+|||+++..+..+..++.+.+....
T Consensus 23 ~~~~~~~~~~~~~s~~~~~-~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~~------------ 89 (393)
T PRK11195 23 LFAAIALLKELHYPDWSQP-LLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFGI------------ 89 (393)
T ss_pred HHHHHHHHHHcCCcHHHHH-HHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHHH------------
Confidence 3444555678888888888 888899999999999999999999999999999888777665543321
Q ss_pred hhhHHHHHHHHHHHHhhhccccccccccccccCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHH
Q 047115 396 GYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLVAQTFLAMLCHFKAGVFFCFGGWVA 475 (522)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 475 (522)
. . ++..++.+.+.+ ...|...++..|.+|+++|+++.|+.+....++..++|.+.+.+.+......+.+. ..+.
T Consensus 90 ~-~---~~~r~l~G~~~a-~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~~~~~~~~i~-~~~~ 163 (393)
T PRK11195 90 H-P---LLAYGLVGIGAA-AYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADPHAEAALAVC-ALIY 163 (393)
T ss_pred H-H---HHHHHHHHHHHH-HHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 1 1 222222333332 34456667778999999999999999999999999999999999886422223222 2223
Q ss_pred HHHHHHHhhccCCC
Q 047115 476 FMTTFVHFFLPETK 489 (522)
Q Consensus 476 i~~~~~~~~~~~~~ 489 (522)
+.+.+..+.+||.+
T Consensus 164 ~~~~~~~~~l~~~~ 177 (393)
T PRK11195 164 LLAALFNLFIPRLG 177 (393)
T ss_pred HHHHHHHhcCCCCc
Confidence 33344456667643
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=8.8e-09 Score=106.43 Aligned_cols=134 Identities=10% Similarity=-0.059 Sum_probs=114.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhhhhHHHHHHHh
Q 047115 64 LAAFTSSLYIAGLIAFLFASKVTRAFGRKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCCYSNHCSIGG 143 (522)
Q Consensus 64 ~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 143 (522)
.+...+.+.++..+++++.|++.||+|||+.+. .+..+.+++.++..
T Consensus 251 ~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~---------------------------------~~~~~~~~~~~~~~ 297 (392)
T PRK12382 251 AGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAI---------------------------------VSLLVETVGLLLLW 297 (392)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehH---------------------------------HHHHHHHHHHHHHH
Confidence 455667778888999999999999999999999 88888888888888
Q ss_pred hhhhhHHHHHHHHHHHhhhhhhhccccccccccccccccccccCCcc-hhHHHHHHHHHHHHHHHHHHHHhhhhccCCCC
Q 047115 144 AAFNIYMLILGCVLLGVGIGFTSQSIQRFNQFAYMILLSSNFETTRL-SHIDFLLQISICYLILSANLLNYGTQKIKGSW 222 (522)
Q Consensus 144 ~a~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~-g~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~ 222 (522)
+.++.+.+++.+++.|++.+...+..... +.| ..++++ ++..++.+....+|..+++.+.+.+.+..
T Consensus 298 ~~~~~~~~~~~~~l~g~~~~~~~~~~~~~--------~~~-~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~--- 365 (392)
T PRK12382 298 LAPTAWVALAGAALTGAGCSLIFPALGVE--------VVK-RVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSF--- 365 (392)
T ss_pred HcccHHHHHHHHHHHHHHHHhHHHHHHHH--------HHH-hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---
Confidence 88888888889999999999888777777 888 788888 99999999999999999999998887554
Q ss_pred chHHHHHhhHHHHHHHHHHh
Q 047115 223 GWRISLAMAAVPASILTIGS 242 (522)
Q Consensus 223 gwr~~f~i~~~~~~~~~~~~ 242 (522)
||+..|.+.++..++..+..
T Consensus 366 g~~~~~~~~~~~~~~~~~~~ 385 (392)
T PRK12382 366 GYPSVFLAGAISAVLGIIVT 385 (392)
T ss_pred CchHHHHHHHHHHHHHHHHH
Confidence 79999998877666655444
|
|
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.3e-07 Score=95.78 Aligned_cols=323 Identities=15% Similarity=0.122 Sum_probs=179.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhccccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhhhhHHHHHHHhhhhh
Q 047115 68 TSSLYIAGLIAFLFASKVTRAFGRKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCCYSNHCSIGGAAFN 147 (522)
Q Consensus 68 ~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~ 147 (522)
.++.+....+.+++.+.+.|+.|.|+.+. ++..++..-.+..-+ .|
T Consensus 56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv---------------------------------~ga~~y~~f~~gfl~-~N 101 (461)
T KOG3098|consen 56 QAIIYAFFTVSCLFAPSIVNFLGPKWALV---------------------------------IGATCYAAFPLGFLF-PN 101 (461)
T ss_pred HHHHHHHHHHHHHhhHHHHHHhhHHHHHH---------------------------------HHhHHHHHHHHHHHh-cc
Confidence 78888899999999999999999999999 999998887776644 56
Q ss_pred hHHHHHHHHHHHhhhhhhhccccccccccccccccccccCCcc-hhHHHHHHHHHHHHHHHHHHHHhhhhccCC-----C
Q 047115 148 IYMLILGCVLLGVGIGFTSQSIQRFNQFAYMILLSSNFETTRL-SHIDFLLQISICYLILSANLLNYGTQKIKG-----S 221 (522)
Q Consensus 148 ~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~-g~~~~~~~~~~~lG~~~~~~~~~~l~~~~~-----~ 221 (522)
-+.++..-.+.|+|.+..+...-.| ++| ..++++ .+..++..+....+.++|..+-..+....+ .
T Consensus 102 ~y~~yfssallG~Gaallw~GqG~y--------lt~-~st~~tie~Nisi~Wai~~~~li~Ggi~l~~~~~~~~~~~~~~ 172 (461)
T KOG3098|consen 102 SYYLYFSSALLGFGAALLWTGQGGY--------LTS-NSTRETIERNISIFWAIGQSSLIIGGIILFIYFQFSSSSAIIT 172 (461)
T ss_pred hHHHHHHHHHhhhhHHheeccccee--------hhh-cCChhhHHHHHHHHHHHHHHHHHhhhHhheeeeEecccccccc
Confidence 7778889999999999999999999 999 899888 999999999999999888776554443221 1
Q ss_pred CchH-H----------HHHhhHHH---HHHHHHHhcccCCChHHHHHhCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHH
Q 047115 222 WGWR-I----------SLAMAAVP---ASILTIGSLFLPETPNSIIQRNKDHQKAEEILQIVRNTTDVKAELDDIIRASS 287 (522)
Q Consensus 222 ~gwr-~----------~f~i~~~~---~~~~~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (522)
.+-+ . ...+.+++ ..+..+...++|.... ..+.++. + +...+.++ ...
T Consensus 173 ~~~~~~~~~~~~~~~~i~~~~~v~~~~~~l~~i~~~~~p~~~~--------~~~~~~~-~-----~~~~~~l~---~~~- 234 (461)
T KOG3098|consen 173 DGTRRLVFEVLFIDFEIKVLFGVLLAISVLSIINFDFLPSKDV--------VNCKSSS-E-----TSFSELLK---LTF- 234 (461)
T ss_pred cchhhhhcchhhhhHHHHHHHHHHHHHHHHHhhheeecCccch--------hhhhhhc-c-----ccHHHHHH---HHH-
Confidence 1221 1 11111111 1112222233333211 0011100 0 01111111 111
Q ss_pred hhccccchhHHHHHHHHHHhhhccchhhHhcHHHHH--H-HcCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhh---ccc
Q 047115 288 KIIHRIYRPQLVMAILIPFQQVTRVNVISFNAPVLF--M-TIKVRKSTSLLMSAVVPDGIGTVSTILPMILADK---LGR 361 (522)
Q Consensus 288 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr---~g~ 361 (522)
++++ .++++......+.............|.-+ . ..+.+............+++.+.+.+..+.+.+| +|+
T Consensus 235 ~l~~---~~~ml~L~~~f~~tG~~~Sf~~~iypt~i~ft~~~~~n~~~~~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~ 311 (461)
T KOG3098|consen 235 KLLK---TPKMLLLFPFFFYTGLETSFWISIYPTCISFTRKLGSNTTYLIAIYSIGIGLGEVIGGLDFSILSKRIRGFGR 311 (461)
T ss_pred HHhc---CHhHHHHHHHHHHHHHHHHHHHhccchhhhhhhhccCcchhHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccc
Confidence 2222 22332222222111111111112222222 1 2333333333245566677778888888888765 577
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhC----CCCCCc-chhhHHHHHHHHHHHHhhhccccccccccccccCchhhhhHH
Q 047115 362 TVLFLLGGIQILVSQVMIRSIMAAQLG----DHGGFN-IGYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAG 436 (522)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~ 436 (522)
++.+.++..+..+..++.-.......+ +..+.. .+......++..+.+.+-. .+....+.++.... ++.|..+
T Consensus 312 ~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~D~-~~~t~~~~ii~~~~-~~~~~~~ 389 (461)
T KOG3098|consen 312 KPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFGDA-CFNTQRYVIIALLY-PDDRAQA 389 (461)
T ss_pred CcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHhhHHH-HHHHHHHHHHHHHh-cCchHHH
Confidence 787777766665555554433211110 000000 0112223333333333332 34445556667777 5678888
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 047115 437 QSITVAVDLLFTFLVAQTFL 456 (522)
Q Consensus 437 ~g~~~~~~~~~~~~~~~~~~ 456 (522)
.++...-..+.+.++....+
T Consensus 390 fsi~kfyq~~~s~v~~f~~~ 409 (461)
T KOG3098|consen 390 FSLFKFYQSVASCVAFFFSP 409 (461)
T ss_pred HHHHHHHHHHHHHHHhhhhh
Confidence 88887777777766554444
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.8e-08 Score=103.78 Aligned_cols=137 Identities=13% Similarity=0.085 Sum_probs=118.4
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhhhhHH
Q 047115 58 KFDSQLLAAFTSSLYIAGLIAFLFASKVTRAFGRKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCCYSN 137 (522)
Q Consensus 58 ~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 137 (522)
|.++.+.|.+.+...++..++.++.+++.||+|+|+.+. .+.++..+
T Consensus 236 g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~---------------------------------~~~~~~~~ 282 (382)
T TIGR00902 236 GISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLL---------------------------------ISAIACVG 282 (382)
T ss_pred CCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHH---------------------------------HHHHHHHH
Confidence 679999999999999999999999999999999999999 99999999
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHhhhhhhhccccccccccccccccccccCCcc-hhHHHHHH-HHHHHHHHHHHHHHhhh
Q 047115 138 HCSIGGAAFNIYMLILGCVLLGVGIGFTSQSIQRFNQFAYMILLSSNFETTRL-SHIDFLLQ-ISICYLILSANLLNYGT 215 (522)
Q Consensus 138 ~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~-g~~~~~~~-~~~~lG~~~~~~~~~~l 215 (522)
..+..+++++.+.+++.+++.|++.|...+....+ +.+ . |+++ ++..++++ ....+|..+++.+++.+
T Consensus 283 ~~~~~~~~~~~~~~~~~q~l~g~~~~~~~~~~~~~--------i~~-~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l 352 (382)
T TIGR00902 283 RWAIIGAIEAFPLIFLLQILHCGTFAVCHLAAMRY--------IAA-Q-PGSEIAKLQALYNALAMGGLIAIFTAFAGFI 352 (382)
T ss_pred HHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHH--------HHh-C-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999 999 7 7777 99999886 57789999999999999
Q ss_pred hccCCCCchHHHHHhhHHHHHHHHHH
Q 047115 216 QKIKGSWGWRISLAMAAVPASILTIG 241 (522)
Q Consensus 216 ~~~~~~~gwr~~f~i~~~~~~~~~~~ 241 (522)
.+.. |+ ..|.+.++..++.+++
T Consensus 353 ~~~~---g~-~~~~~~~~~~~~~~~~ 374 (382)
T TIGR00902 353 YPTL---GA-GTFVFMAIIAAAAFFL 374 (382)
T ss_pred HHhc---cH-HHHHHHHHHHHHHHHH
Confidence 8654 55 4455544444444433
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.94 E-value=6.1e-09 Score=110.36 Aligned_cols=165 Identities=10% Similarity=-0.113 Sum_probs=115.3
Q ss_pred hhhHhcHHHHHHHcCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC
Q 047115 313 NVISFNAPVLFMTIKVRKSTSLLMSAVVPDGIGTVSTILPMILADKLGRTVLFLLGGIQILVSQVMIRSIMAAQLGDHGG 392 (522)
Q Consensus 313 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (522)
..+....|.+.+++|++..+.+ ++.+...++..++.++.|+++||+|+|+++..+.+..++..+.+......
T Consensus 46 ~~~~~~~~~i~~~~~~s~~~~g-~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~------- 117 (467)
T PRK09556 46 KNFKAAQNDMISTYGLSTTELG-MIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAICMLGFGASLGS------- 117 (467)
T ss_pred cChhhhhHHHHHhcCCCHHHHH-HHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHHHHHHHHHHHhc-------
Confidence 3455567888899999999999 89999999999999999999999999999988877776666655543210
Q ss_pred CcchhhHHHHHHHHHHHHhhhccccccccccccccCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cch-hhH
Q 047115 393 FNIGYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLVAQTFLAMLCHF---KAG-VFF 468 (522)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~---g~~-~~~ 468 (522)
...+.+..++.-.+.+.+.+... +....+.+|.+|+++|+++.|+......++..+++.+.....+.. ++. .+.
T Consensus 118 -~~~~~~~l~~~r~l~G~~~~~~~-~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~ 195 (467)
T PRK09556 118 -GSVSLGLMIALWALSGFFQSTGG-PCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGMFI 195 (467)
T ss_pred -ccchHHHHHHHHHHHHHHHhccc-hHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchhHHH
Confidence 01223334444444445445443 344466789999999999999999999999999888876665543 232 344
Q ss_pred HHHHHHHHHHHHHHhhccC
Q 047115 469 CFGGWVAFMTTFVHFFLPE 487 (522)
Q Consensus 469 ~~~~~~~i~~~~~~~~~~~ 487 (522)
+.+.+.++.+++.+++.++
T Consensus 196 ~~g~~~~~~~i~~~~~~~~ 214 (467)
T PRK09556 196 FPSIIALIIGFIGLRYGSD 214 (467)
T ss_pred HHHHHHHHHHHHHHHhCCC
Confidence 4455555555555555443
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.9e-08 Score=104.48 Aligned_cols=173 Identities=14% Similarity=0.081 Sum_probs=116.0
Q ss_pred HHHHhhhccchhhHhcHHHHHHHcCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhhc-----cchH-HHHHHHHHHHHHH
Q 047115 303 LIPFQQVTRVNVISFNAPVLFMTIKVRKSTSLLMSAVVPDGIGTVSTILPMILADKL-----GRTV-LFLLGGIQILVSQ 376 (522)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-----g~~~-~~~~~~~~~~~~~ 376 (522)
.+++.+.........-.|.++++.|++.++.+ ++...... .+..+++|+++||+ |||| .+..+.....++.
T Consensus 6 ~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~ig-~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~ 82 (402)
T PRK11902 6 LLGFASGLPLALTSGTLQAWMTVEGLDIQTIG-FFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASI 82 (402)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHcCCCHHHHH-HHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHH
Confidence 34466666667777888999999999999998 65444443 68889999999999 7765 6776666666666
Q ss_pred HHHHHHHHHhhCCCCCCcchhhHHHHHHHHHHHHhhhccccccccccccccCchhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 047115 377 VMIRSIMAAQLGDHGGFNIGYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLVAQTFL 456 (522)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~ 456 (522)
..+.... +....+......++.. .+.....+...++..|.+|+++|+++.++......++..+++.+.+
T Consensus 83 ~~l~~~~----------~~~~~~~l~~~~~~~~-~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~ 151 (402)
T PRK11902 83 AAMAFCP----------PHAALWPLAGLAVLVA-FLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLAL 151 (402)
T ss_pred HHHHhcC----------ccchHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHH
Confidence 6554421 1122233333323333 3333344555677789999999999999999988999999999888
Q ss_pred HHHHhc-cchhhHHHHHHHHHHHHHHHhhccCCC
Q 047115 457 AMLCHF-KAGVFFCFGGWVAFMTTFVHFFLPETK 489 (522)
Q Consensus 457 ~~~~~~-g~~~~~~~~~~~~i~~~~~~~~~~~~~ 489 (522)
.+.+.. +|...+.+.+...+...+..++.||++
T Consensus 152 ~l~~~~~gw~~~f~i~a~~~l~~~l~~~~~~e~~ 185 (402)
T PRK11902 152 WLADRVLGWGNTYLLMAGLMLAGALTTLWAPEPE 185 (402)
T ss_pred HHHhcccCHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 888754 665544433333333444445566653
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=98.93 E-value=6.9e-08 Score=99.38 Aligned_cols=177 Identities=15% Similarity=0.086 Sum_probs=129.9
Q ss_pred hhHHHHHHHHH-HhhhccchhhHhcHHHHHHHcCCCCch-hhHHHhHHHHHHHHHHHHhHHHHhhhccchHHHHHHHHHH
Q 047115 295 RPQLVMAILIP-FQQVTRVNVISFNAPVLFMTIKVRKST-SLLMSAVVPDGIGTVSTILPMILADKLGRTVLFLLGGIQI 372 (522)
Q Consensus 295 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~ 372 (522)
+++....+|++ |..-...+ ..+-.|.+.++.|++..+ .+ .+......+..+..+..|+++||+|.|+++.++.+..
T Consensus 25 W~~~~~~lC~fGF~~e~R~n-~s~a~p~L~~elglT~~qv~G-~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~W 102 (511)
T TIGR00806 25 WRVLVLYLCFYGFMAQFRPG-ESFITPYLLTVLNFTEETVTN-EIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSF 102 (511)
T ss_pred hhHHHHHHHHHHHHHHhhch-HHHHHHHHHHHcCCCHHHhcc-hHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 33444444554 44444433 455667777899999999 88 9999999999999999999999999999999988888
Q ss_pred HHHHHHHHHHHHHhhCCCCCCcchhhHHHHHHHHHHHHhhhccccccccccccccCchhhhhHHHHHHHHHHHHHHHHHH
Q 047115 373 LVSQVMIRSIMAAQLGDHGGFNIGYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLVA 452 (522)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~ 452 (522)
.+..++.++.. ..+.+.+.-++++.+-+..+ ....++...+|+++|+++.|+.++...+|.++++
T Consensus 103 sl~t~L~~fa~-------------Sl~~L~i~R~llGvaEA~~~--A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~ 167 (511)
T TIGR00806 103 VCVWLLLLLGT-------------SVWHMQLMEVFYSVTMAARI--AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSS 167 (511)
T ss_pred HHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88877777642 23344555555556555554 4446668899999999999999999999999999
Q ss_pred HHHHHHHHhccchh---hHHHHHHHHHHHHHHHhhccCCC
Q 047115 453 QTFLAMLCHFKAGV---FFCFGGWVAFMTTFVHFFLPETK 489 (522)
Q Consensus 453 ~~~~~~~~~~g~~~---~~~~~~~~~i~~~~~~~~~~~~~ 489 (522)
++.+. ...++|.. ...+.....+.+++..+++|..+
T Consensus 168 ~L~ql-l~s~gWr~y~~Ln~Isl~s~~~a~~~a~~LP~~~ 206 (511)
T TIGR00806 168 VLGQL-LVTLGWISYSTLNIISLVFMTFSVFLALFLKRPK 206 (511)
T ss_pred HHHHH-HHhcCchhHHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 99988 55666543 33344445556666677787443
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=98.90 E-value=5.2e-08 Score=101.42 Aligned_cols=135 Identities=12% Similarity=0.063 Sum_probs=102.0
Q ss_pred hhhHhcHHHHHHHcCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC
Q 047115 313 NVISFNAPVLFMTIKVRKSTSLLMSAVVPDGIGTVSTILPMILADKLGRTVLFLLGGIQILVSQVMIRSIMAAQLGDHGG 392 (522)
Q Consensus 313 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (522)
+......|.+.++.|.+..+.+ +..+...++..++++..+++.||+|||+.+..+..+..++.++......
T Consensus 20 ~~~~~l~~~~~~~~~~s~~~~g-~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~~-------- 90 (410)
T TIGR00885 20 DITNPMVPQFQQAFTLTAFQAA-LVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAAE-------- 90 (410)
T ss_pred HhHHHHHHHHHHHhCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHh--------
Confidence 3444667888888999999999 9999999999999999999999999999999999888888766543210
Q ss_pred CcchhhHHHHHHHHHHHHhhhccccccccccccccCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047115 393 FNIGYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLVAQTFLAML 459 (522)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~ 459 (522)
.++.+..+...++.+.+.+....+. ..+..+..|+++|++..++.+....+|..+++.+.+.+.
T Consensus 91 --~~~~~~~l~~~~l~G~g~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~ 154 (410)
T TIGR00885 91 --IMNYTLFLVGLFILTAGLGFLETAA-NPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLI 154 (410)
T ss_pred --hccHHHHHHHHHHHHhhHHHHHhhh-hHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1122333344444444444433323 345567889999999999999999999999999888775
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=5.8e-08 Score=100.48 Aligned_cols=137 Identities=12% Similarity=-0.067 Sum_probs=106.4
Q ss_pred hhhHhcHHHHHHHcCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC
Q 047115 313 NVISFNAPVLFMTIKVRKSTSLLMSAVVPDGIGTVSTILPMILADKLGRTVLFLLGGIQILVSQVMIRSIMAAQLGDHGG 392 (522)
Q Consensus 313 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (522)
.......|.+.+++|++..+.+ +..+...++..++++..|++.||+|||+++..+..+..++.+...+..
T Consensus 26 ~~~~~~lp~i~~~~~~s~~~~g-~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~--------- 95 (393)
T PRK09705 26 TSVGPLLPQLRQASGMSFSVAA-LLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYP--------- 95 (393)
T ss_pred hccchhHHHHHHHhCCCHHHHH-HHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCc---------
Confidence 3455677888899999999999 999999999999999999999999999999999999999988777642
Q ss_pred CcchhhHHHHHHHHHHHHhhhccccccccccccccCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cch
Q 047115 393 FNIGYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLVAQTFLAMLCHF-KAG 465 (522)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-g~~ 465 (522)
+.+..++.-.+.+.+.+.... ....+..+.+| ++|+.++++.......+..+++.+.+.+.++. +|.
T Consensus 96 ----~~~~ll~~r~l~Gig~~~~~~-~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~ 163 (393)
T PRK09705 96 ----QSALLLSSALLGGVGIGIIQA-VMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWY 163 (393)
T ss_pred ----chHHHHHHHHHHHhHHHHHhh-hhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Confidence 222333444444444443332 33455577787 78999999999998899999999988888875 453
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.88 E-value=6e-08 Score=97.21 Aligned_cols=181 Identities=14% Similarity=0.070 Sum_probs=122.6
Q ss_pred cchhHHHHHHHHHHhhhccchhhHhcHHHHHHHcCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhhccchHHHHHHHHHH
Q 047115 293 IYRPQLVMAILIPFQQVTRVNVISFNAPVLFMTIKVRKSTSLLMSAVVPDGIGTVSTILPMILADKLGRTVLFLLGGIQI 372 (522)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~ 372 (522)
..++.+++........+.....+....+.+-+++++|+.|.. ++...+.+.+.+.++..|.+.||+|.|+...++.++.
T Consensus 11 ~~~~~L~~S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~~-ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~ 89 (417)
T COG2223 11 IARRNLWLSTLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKG-LLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLL 89 (417)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCHHHHH-HHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHH
Confidence 334444444333333333333344444555578899999999 9999999999999999999999999999999988887
Q ss_pred HHHHHHHHHHHHHhhCCCCCCcchhhHHHHHHHHHHHHhhhccccccccccccccCchhhhhHHHHHHHHHHHHHHHHHH
Q 047115 373 LVSQVMIRSIMAAQLGDHGGFNIGYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLVA 452 (522)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~ 452 (522)
.+-.+.+.+.. ..+..+..+++..+ .+.+.+.-.+....+++.+|++++|.+.|+.. .+++|..+..
T Consensus 90 ~IP~~~~~~a~----------~~~~~~~ll~~gll--~G~~GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q 156 (417)
T COG2223 90 LIPCLGLAFAV----------TYPSTWQLLVIGLL--LGLAGASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQ 156 (417)
T ss_pred HHHHHHHHHHc----------cCCchHHHHHHHHH--HhcccceehcccccccccCChhhhhHHHHHhc-cccccHHHHH
Confidence 77777666653 11211333333322 22222233345567789999999999999998 9999999988
Q ss_pred HHHHHHHHhcc---ch-hhHHHHHHHHHHHHHHHhhccC
Q 047115 453 QTFLAMLCHFK---AG-VFFCFGGWVAFMTTFVHFFLPE 487 (522)
Q Consensus 453 ~~~~~~~~~~g---~~-~~~~~~~~~~i~~~~~~~~~~~ 487 (522)
.+.+.+....+ |. +..++....++..+..++...+
T Consensus 157 ~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d 195 (417)
T COG2223 157 LVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMND 195 (417)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 88888888777 32 3444445555555556665543
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.1e-08 Score=86.64 Aligned_cols=136 Identities=18% Similarity=0.152 Sum_probs=95.2
Q ss_pred hHHHHHHHHHHHHhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcchhhHHHHHHHHHHHHhhhcccc
Q 047115 338 AVVPDGIGTVSTILPMILADKLGRTVLFLLGGIQILVSQVMIRSIMAAQLGDHGGFNIGYAYLILFLICVYKAGFAFSRG 417 (522)
Q Consensus 338 ~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (522)
.....++.+++.+..+++.||++||+.+..+.....++.+..... ...+...+...+.+.+.+. ..
T Consensus 4 ~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~g~~~~~-~~ 69 (141)
T TIGR00880 4 LAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALS-------------SNITVLIIARFLQGFGAAF-AL 69 (141)
T ss_pred EEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHh-------------ccHHHHHHHHHHHHHHHHH-HH
Confidence 344567888999999999999999999888777766665554432 1122333333333333332 23
Q ss_pred ccccccccccCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-hhhHHHHHHHHHHHHHHHhhccC
Q 047115 418 PLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLVAQTFLAMLCHFKA-GVFFCFGGWVAFMTTFVHFFLPE 487 (522)
Q Consensus 418 ~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~i~~~~~~~~~~~ 487 (522)
+....+..|.+|++.|+++.++.+....++..+++.+.+.+.+..++ ..+.+.+.+..+..+..++..||
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (141)
T TIGR00880 70 VAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPE 140 (141)
T ss_pred HhHHHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 44556678999999999999999999999999999999999887776 44555555555555555555554
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=8.1e-08 Score=100.91 Aligned_cols=148 Identities=8% Similarity=-0.012 Sum_probs=104.6
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhhhhHH
Q 047115 58 KFDSQLLAAFTSSLYIAGLIAFLFASKVTRAFGRKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCCYSN 137 (522)
Q Consensus 58 ~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 137 (522)
|++......+.....+...++.+++|+++||+|||+++. .+.++..+
T Consensus 282 g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~---------------------------------~~~~~~~~ 328 (438)
T PRK09952 282 GLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYI---------------------------------TGALIGTL 328 (438)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHH---------------------------------HHHHHHHH
Confidence 556665555666667777889999999999999999988 66655544
Q ss_pred HHHHHhh---h-hhhHHHHHHHHHHHhhhhhhhccccccccccccccccccccCCcc-hhHHHHH-HHHHHHHHHHHHHH
Q 047115 138 HCSIGGA---A-FNIYMLILGCVLLGVGIGFTSQSIQRFNQFAYMILLSSNFETTRL-SHIDFLL-QISICYLILSANLL 211 (522)
Q Consensus 138 ~~~~~~~---a-~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~-g~~~~~~-~~~~~lG~~~~~~~ 211 (522)
+.+.... . ++.+.+++..++.|++.+...+....+ ++| .+|++. +...++. ..+..+|..++|.+
T Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--------~~e-~~p~~~r~tg~g~~~~~~~~lgg~~~p~i 399 (438)
T PRK09952 329 SAFPFFMALEAQSIFWIVFFSIMLANIAHDMVVCVQQPM--------FTE-MFGASYRYSGAGVGYQVASVVGGGFTPFI 399 (438)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHH--------HHH-HCCcchhHHHHhHHHHHHHHHHHHHHHHH
Confidence 4433322 2 234444556677788888877777788 999 899877 7777774 44556888899999
Q ss_pred HhhhhccCCCCchHHHHHhhHHHHHHHHHHhcccCCC
Q 047115 212 NYGTQKIKGSWGWRISLAMAAVPASILTIGSLFLPET 248 (522)
Q Consensus 212 ~~~l~~~~~~~gwr~~f~i~~~~~~~~~~~~~~lpes 248 (522)
.+.+.+..+ .+|+..+...++..++..+..+.++|+
T Consensus 400 ~g~l~~~~~-~~~~~~~~~~~~~~~i~~v~~~~~~~~ 435 (438)
T PRK09952 400 AAALVTYFG-GSWHSVAIYLLAGCLISAMTALLMKDN 435 (438)
T ss_pred HHHHHHhcC-CCchHHHHHHHHHHHHHHHHHHHcccc
Confidence 888865432 258888877777776666665566664
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.1e-07 Score=99.76 Aligned_cols=166 Identities=11% Similarity=0.082 Sum_probs=106.8
Q ss_pred chhhHhcHHHHHHHcCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Q 047115 312 VNVISFNAPVLFMTIKVRKSTSLLMSAVVPDGIGTVSTILPMILADKLGRTVLFLLGGIQILVSQVMIRSIMAAQLGDHG 391 (522)
Q Consensus 312 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (522)
.+.+..+.|.+.+++|++..+.+ .+...... .....++.|++.||+|+|+++.++.+...++.++..+....
T Consensus 43 ~y~fsv~s~~L~~~lgls~~~l~-~i~svg~~-~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~------ 114 (591)
T PTZ00207 43 MYAFNLISGAMQARYNLTQRDLS-TITTVGIA-VGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQE------ 114 (591)
T ss_pred HHHHHHHHHHHHHHhCcCHHHHH-HHHHHHHH-HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcc------
Confidence 34567788888889999998888 55554333 33456678999999999999999999999988877764210
Q ss_pred CCcchhhHHHHHHHHHHHHhhhccccccccccccccCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHH
Q 047115 392 GFNIGYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLVAQTFLAMLCHFKAGVFFCFG 471 (522)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 471 (522)
.-....+...+..++.+.+.+.... .......+.+| ++||.+.|+......+++.+.+.+...+........+++.+
T Consensus 115 -~i~~s~~~l~l~r~l~G~G~~~~~~-~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~~~~~~fl~l~ 191 (591)
T PTZ00207 115 -VIEGSVVRLSVYNGLMTLGCMLFDL-GAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFSDNTSAYFFFLM 191 (591)
T ss_pred -cccCcHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 0012233333333333333222222 22234467787 78999999999999999987666666555422234455566
Q ss_pred HHHHHHHHHHHhhccCC
Q 047115 472 GWVAFMTTFVHFFLPET 488 (522)
Q Consensus 472 ~~~~i~~~~~~~~~~~~ 488 (522)
.+..+.+++.+.++++.
T Consensus 192 vl~~vv~ll~~~~vr~p 208 (591)
T PTZ00207 192 SFALVVGILAIVFMRLP 208 (591)
T ss_pred HHHHHHHHHHHhheeCC
Confidence 66666666666655443
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.9e-07 Score=97.99 Aligned_cols=176 Identities=13% Similarity=0.009 Sum_probs=103.0
Q ss_pred HhhhccchhhHhcHHHHHHHcC---CCCch---hhHHHhHHHHHHHHHHHHhHHHHhhhccchHHHHHHHHHHHHHHHHH
Q 047115 306 FQQVTRVNVISFNAPVLFMTIK---VRKST---SLLMSAVVPDGIGTVSTILPMILADKLGRTVLFLLGGIQILVSQVMI 379 (522)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~g---~~~~~---~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~ 379 (522)
+........+....|.+.++.+ .+..+ .. .......++..+++++.|+++||+|||+.+..+.....++.+..
T Consensus 32 ~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~ 110 (432)
T PRK10406 32 LVEWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTA-GVFAAGFLMRPIGGWLFGRIADKHGRKKSMLISVCMMCFGSLVI 110 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence 3334444445555666666653 33332 22 33445566667999999999999999999999998888887776
Q ss_pred HHHHHHhhCCCCCCcchhhHHHHHHHHHHHHhhhccccccccccccccCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047115 380 RSIMAAQLGDHGGFNIGYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLVAQTFLAML 459 (522)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~ 459 (522)
.+..... ..........+++-.+.+.+.+. ..+....+++|.+|+++|+...++.......+..+++.+...+.
T Consensus 111 ~~~~~~~-----~~~~~~~~~l~~~R~l~G~g~g~-~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~ 184 (432)
T PRK10406 111 ACLPGYE-----TIGTWAPALLLLARLFQGLSVGG-EYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQ 184 (432)
T ss_pred hhcCCch-----hHHHHHHHHHHHHHHHHHhhhhh-hHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6532000 00001111223333333333332 33455677799999999999988877766666666665544332
Q ss_pred --------HhccchhhHHHHHHHHHHHHHHHhhccCC
Q 047115 460 --------CHFKAGVFFCFGGWVAFMTTFVHFFLPET 488 (522)
Q Consensus 460 --------~~~g~~~~~~~~~~~~i~~~~~~~~~~~~ 488 (522)
+..+|...+..+++..+.........||+
T Consensus 185 ~~~~~~~~~~~gWr~~F~i~~~~~ll~~~~~~~~~e~ 221 (432)
T PRK10406 185 QTLEDAELREWGWRIPFALGAVLAVVALWLRRQLDET 221 (432)
T ss_pred HhCCHHHHhccchHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 24567655555554444444333344554
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.6e-08 Score=99.88 Aligned_cols=149 Identities=14% Similarity=0.023 Sum_probs=133.4
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhhhh
Q 047115 56 YGKFDSQLLAAFTSSLYIAGLIAFLFASKVTRAFGRKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCCY 135 (522)
Q Consensus 56 ~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 135 (522)
++|++..+...+.-...+..+++++++|++.||+|.|+++. .+.+++
T Consensus 282 ~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~---------------------------------~~lvi~ 328 (438)
T COG2270 282 DLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLM---------------------------------IGLVIL 328 (438)
T ss_pred HcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeh---------------------------------HHHHHH
Confidence 45899999999999999999999999999999999999999 999999
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHhhhhhhhccccccccccccccccccccCCcc-hhHHHHHHHHHHHHHHHHHHHHhh
Q 047115 136 SNHCSIGGAAFNIYMLILGCVLLGVGIGFTSQSIQRFNQFAYMILLSSNFETTRL-SHIDFLLQISICYLILSANLLNYG 214 (522)
Q Consensus 136 ~~~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~-g~~~~~~~~~~~lG~~~~~~~~~~ 214 (522)
.+.++...+...-..+.+.-.+.|+..|..+..+-+| .++ ..|++| ++.+|++....-.+..+||.+-+.
T Consensus 329 ~~~~~~~~~~~~~~~f~i~gll~g~s~G~~qA~SRSy--------~~~-lvp~~k~~~fFglyaltgra~S~~gp~lv~v 399 (438)
T COG2270 329 SIAALYLIFLEGELDFWILGLLVGTSLGGAQASSRSY--------LAR-LVPKGKEGRFFGLYALTGRAASFLGPFLVAV 399 (438)
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHhcchHHHHHHHH--------HHH-hCCCccccceeehhhhhhhHHHHHHHHHHHH
Confidence 9999988888888888888899999999999999999 999 999999 999999999999999999999988
Q ss_pred hhccCCCCchHHHHHhhHHHHHHHHHHhcccCCC
Q 047115 215 TQKIKGSWGWRISLAMAAVPASILTIGSLFLPET 248 (522)
Q Consensus 215 l~~~~~~~gwr~~f~i~~~~~~~~~~~~~~lpes 248 (522)
+.+..+ +-|..+....++..+.++.++..|+.
T Consensus 400 ~t~iTg--~~r~g~~~i~vll~iGl~~L~~v~~~ 431 (438)
T COG2270 400 ITQITG--SSRAGVLSIIVLLLIGLLLLLRVKVP 431 (438)
T ss_pred HHHHhc--chhhHHHHHHHHHHhhHhhEEeecCC
Confidence 887776 57777777677777777777777764
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.8e-07 Score=98.23 Aligned_cols=167 Identities=11% Similarity=0.017 Sum_probs=102.5
Q ss_pred HHHHHHH-HhhhccchhhHhcHHHHHHHcCCCCchhhHHHhHH-----HHHHHHHHHHhHHHHhhhccchHHHHHHHHHH
Q 047115 299 VMAILIP-FQQVTRVNVISFNAPVLFMTIKVRKSTSLLMSAVV-----PDGIGTVSTILPMILADKLGRTVLFLLGGIQI 372 (522)
Q Consensus 299 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-----~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~ 372 (522)
....++. +........+....|.+.++++.++.+...+..+. ..+...+++++.|+++||+|||+.+..+....
T Consensus 17 ~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~ 96 (434)
T PRK15075 17 ILRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIVTLSIM 96 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHHHHHHH
Confidence 3333444 55555566677888988888888776643122221 12233467899999999999999999998888
Q ss_pred HHHHHHHHHHHHHhhCCCCCCcchhhHHHHHHHHHHHHhhhccccccccccccccCchhhhhHHHHHHHHHHHHHHHHHH
Q 047115 373 LVSQVMIRSIMAAQLGDHGGFNIGYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLVA 452 (522)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~ 452 (522)
.++.++..+..... ..........++.-++.+.+.+... +....+.+|.+|+++|+++.++.....+++..+++
T Consensus 97 ~~~~~l~~~~~~~~-----~~~~~~~~~l~~~R~l~G~~~g~~~-~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~ 170 (434)
T PRK15075 97 ASGTLLIAFVPGYA-----TIGLAAPLLVLLGRLLQGFSAGVEL-GGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAA 170 (434)
T ss_pred HHHHHHHHhCCcHH-----HHHHHHHHHHHHHHHHhhccccccH-HHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHH
Confidence 88777766531000 0000000112222333333333222 23346778999999999999999888887777777
Q ss_pred HHHHHHH--------HhccchhhHHHH
Q 047115 453 QTFLAML--------CHFKAGVFFCFG 471 (522)
Q Consensus 453 ~~~~~~~--------~~~g~~~~~~~~ 471 (522)
.+.+.+. +..+|...+.++
T Consensus 171 ~~g~~l~~~~~~~~~~~~gWr~~f~~~ 197 (434)
T PRK15075 171 LLGYLLNQWLSPAQMAEWGWRIPFLIG 197 (434)
T ss_pred HHHHHHHHhCCHHHHhccchHHHHHHH
Confidence 6655542 345665444443
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.5e-07 Score=100.58 Aligned_cols=161 Identities=11% Similarity=0.030 Sum_probs=107.1
Q ss_pred HHHHHHHHHhhhccchhhHhcHHHHH-HHcCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhh-ccchHHHHHHHHHHHHH
Q 047115 298 LVMAILIPFQQVTRVNVISFNAPVLF-MTIKVRKSTSLLMSAVVPDGIGTVSTILPMILADK-LGRTVLFLLGGIQILVS 375 (522)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~~~~~~~~~~~~ 375 (522)
.+..+...+....+++.+..+.+.++ +++|++..++. ..............+++|+++|| +|||+.+..+..+..++
T Consensus 23 ~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~-~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig 101 (500)
T PRK09584 23 FYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSI-TLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIG 101 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence 33333343555556666777888887 67899988877 56655555555556789999999 59999999998888877
Q ss_pred HHHHHHHHHHhhCCCCCCcchhhHHHHHHHHHHHHhhhccccccccccccccCchhh--hhHHHHHHHHHHHHHHHHHHH
Q 047115 376 QVMIRSIMAAQLGDHGGFNIGYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFPLEI--RSAGQSITVAVDLLFTFLVAQ 453 (522)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~--r~~~~g~~~~~~~~~~~~~~~ 453 (522)
..++.... ...+...+...+.+.+.+.. .+....+.+|.+|++. |..+.++.+...++|..++|.
T Consensus 102 ~~l~~~~~------------~~~~~l~~~~~l~gig~g~~-~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~ 168 (500)
T PRK09584 102 YALVAWSG------------HDAGIVYMGMATIAVGNGLF-KANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSML 168 (500)
T ss_pred HHHHHHhc------------ccHHHHHHHHHHHHHhhhcc-cCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHH
Confidence 66555421 11122222233333333332 3344456688887643 456788889999999999999
Q ss_pred HHHHHHHhccchhhHHHHH
Q 047115 454 TFLAMLCHFKAGVFFCFGG 472 (522)
Q Consensus 454 ~~~~~~~~~g~~~~~~~~~ 472 (522)
+.+.+.++.+|...+...+
T Consensus 169 i~g~l~~~~g~~~~F~i~~ 187 (500)
T PRK09584 169 ATPWLAAKYGWSVAFALSV 187 (500)
T ss_pred HHHHHHHhhCHHHHHHHHH
Confidence 9999999888755444444
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=98.79 E-value=5e-08 Score=104.35 Aligned_cols=153 Identities=13% Similarity=0.065 Sum_probs=104.3
Q ss_pred cHHHHHHHcCCC---CchhhHHHhHHHHHHHHHHHHhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCc
Q 047115 318 NAPVLFMTIKVR---KSTSLLMSAVVPDGIGTVSTILPMILADKLGRTVLFLLGGIQILVSQVMIRSIMAAQLGDHGGFN 394 (522)
Q Consensus 318 ~~~~~~~~~g~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (522)
+.|.+.++.+++ ..+.+ +..+...++.+++.++.|+++||+|||+++.++.++..++.++..+.
T Consensus 111 ~~~~i~~e~~l~c~~~~~~~-~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~------------ 177 (505)
T TIGR00898 111 FSSTIVTEWDLVCEDAWKVD-LTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFS------------ 177 (505)
T ss_pred ccccEEEEecceechHHHHH-HHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHc------------
Confidence 445555677887 67777 88999999999999999999999999999998887777776655442
Q ss_pred chhhHHHHHHHHHHHHhhhccccccccccccccCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHH
Q 047115 395 IGYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLVAQTFLAMLCHFKAGVFFCFGGWV 474 (522)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 474 (522)
...+..++...+.+.+.+ ...+....+..|.+|+++|+.+.++......+|..+++.+...+.+ |...+...++.
T Consensus 178 -~~~~~~~~~r~l~G~~~~-~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~---wr~~~~~~~i~ 252 (505)
T TIGR00898 178 -PNYTVFLVFRLLVGMGIG-GIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPD---WRWLQLAVSLP 252 (505)
T ss_pred -ccHHHHHHHHHHHHhhcc-chHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHH
Confidence 122333333333333333 2345566778999999999999999988888888777776554433 33333333333
Q ss_pred HHHHHHHHhhccCC
Q 047115 475 AFMTTFVHFFLPET 488 (522)
Q Consensus 475 ~i~~~~~~~~~~~~ 488 (522)
.+...+..+++||+
T Consensus 253 ~~~~~~~~~~~~es 266 (505)
T TIGR00898 253 TFLFFLLSWFVPES 266 (505)
T ss_pred HHHHHHHHHhcCCC
Confidence 33334444667775
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.7e-07 Score=99.84 Aligned_cols=180 Identities=16% Similarity=0.076 Sum_probs=113.8
Q ss_pred hHHHHHHHHHHhhhccchhhHhcHHHHHHHcCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhhc-----cchHH-HHHHH
Q 047115 296 PQLVMAILIPFQQVTRVNVISFNAPVLFMTIKVRKSTSLLMSAVVPDGIGTVSTILPMILADKL-----GRTVL-FLLGG 369 (522)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-----g~~~~-~~~~~ 369 (522)
++......+.+.+...........|.++++.|.+..+.+ .. +..... .++.+++++++||+ |||+. +..+.
T Consensus 12 ~~~~~~~~l~~~~gl~~~~~~~~l~~~l~~~g~~~~~ig-~~-~~~~~~-~~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~ 88 (491)
T PRK11010 12 PNSAILLILGFASGLPLALTSGTLQAWMTVENIDLKTIG-FF-SLVGQA-YVFKFLWSPLMDRYTPPFLGRRRGWLLATQ 88 (491)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHH-HH-HHHHHH-HHHHHHHHHHHHcccccCCCCchHHHHHHH
Confidence 344444444455555555666678888888899988887 43 222222 26889999999999 98885 55555
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCCCcchhhHHHHHHHHHHHHhhhccccccccccccccCchhhhhHHHHHHHHHHHHHHH
Q 047115 370 IQILVSQVMIRSIMAAQLGDHGGFNIGYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTF 449 (522)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~ 449 (522)
+...++...+.... +....+.......+...+.+ ...+...++..|.+|+++|+++.++......++..
T Consensus 89 i~~~~~~~~~a~~~----------~~~~l~~l~~~~~l~~~~~a-~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~l 157 (491)
T PRK11010 89 LLLLVAIAAMGFLE----------PGTQLRWLAALAVVIAFCSA-SQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAML 157 (491)
T ss_pred HHHHHHHHHHHHcC----------CcchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHH
Confidence 55555555554431 11222222222333323322 34445557778999999999999999999999999
Q ss_pred HHHHHHHHHHH-hccchhhHHHHHHHHHHHHHHHhhccCCC
Q 047115 450 LVAQTFLAMLC-HFKAGVFFCFGGWVAFMTTFVHFFLPETK 489 (522)
Q Consensus 450 ~~~~~~~~~~~-~~g~~~~~~~~~~~~i~~~~~~~~~~~~~ 489 (522)
+++.+.+.+.+ ..+|...+...+...+...+..++.||+.
T Consensus 158 lg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~~~~~e~~ 198 (491)
T PRK11010 158 VSGGLALWLADRYLGWQGMYWLMAALLIPCIIATLLAPEPT 198 (491)
T ss_pred HHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 99999888888 45765544443333333444444567653
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=98.78 E-value=1e-07 Score=100.52 Aligned_cols=147 Identities=17% Similarity=0.065 Sum_probs=127.2
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhccc--cccccccccCcccchhhhhhhhhhhhhhhhcccccccchhhh
Q 047115 57 GKFDSQLLAAFTSSLYIAGLIAFLFASKVTRAFGRK--ASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCC 134 (522)
Q Consensus 57 ~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 134 (522)
+|++..+...+.-...+...+|++++|++.||+|.| ++++ +++++
T Consensus 312 lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~---------------------------------~~l~~ 358 (477)
T PF11700_consen 312 LGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLL---------------------------------ISLIL 358 (477)
T ss_pred cCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHH---------------------------------HHHHH
Confidence 388999999999999999999999999999999999 8888 77777
Q ss_pred hHHHHHHHhh--------hhhhHHHHHHHHHHHhhhhhhhccccccccccccccccccccCCcc-hhHHHHHHHHHHHHH
Q 047115 135 YSNHCSIGGA--------AFNIYMLILGCVLLGVGIGFTSQSIQRFNQFAYMILLSSNFETTRL-SHIDFLLQISICYLI 205 (522)
Q Consensus 135 ~~~~~~~~~~--------a~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~-g~~~~~~~~~~~lG~ 205 (522)
+.+..+...+ .++.+.+.+.-++.|+..|..++...++ .++ ..|+.+ +..+|++....-...
T Consensus 359 ~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~--------~~~-LiP~g~e~efFgly~i~gk~ss 429 (477)
T PF11700_consen 359 WIIIPLYGLFGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSL--------FSR-LIPPGREAEFFGLYAITGKASS 429 (477)
T ss_pred HHHHHHHHHHHhhhcccCcccHHHHHHHHHHHHHHhhhHHHHHHHH--------HHH-hCCCchhhHHHHHHHHHHHHHH
Confidence 7666666555 5778889999999999999999998888 999 999999 999999999999999
Q ss_pred HHHHHHHhhhhccCCCCchHHHHHhhHHHHHHHHHHhcccCC
Q 047115 206 LSANLLNYGTQKIKGSWGWRISLAMAAVPASILTIGSLFLPE 247 (522)
Q Consensus 206 ~~~~~~~~~l~~~~~~~gwr~~f~i~~~~~~~~~~~~~~lpe 247 (522)
.+||++-+.+.+..+ +-|+.+....++.++.+++++++++
T Consensus 430 ~lGPll~g~i~~~tg--~~r~g~~~l~~lf~~gl~ll~~v~~ 469 (477)
T PF11700_consen 430 WLGPLLFGLITDATG--SQRYGFLFLLVLFLIGLILLFFVDV 469 (477)
T ss_pred HHHHHHHHHHHHHhC--CchhHHHHHHHHHHHHHHHHhhccc
Confidence 999999998887775 5788887777777777666666654
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=98.78 E-value=9.6e-08 Score=97.27 Aligned_cols=162 Identities=15% Similarity=0.055 Sum_probs=102.6
Q ss_pred hhHhcHHHHHHHcCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhhc-----cchHHH-HHHHHHHHHHHHHHHHHHHHhh
Q 047115 314 VISFNAPVLFMTIKVRKSTSLLMSAVVPDGIGTVSTILPMILADKL-----GRTVLF-LLGGIQILVSQVMIRSIMAAQL 387 (522)
Q Consensus 314 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-----g~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 387 (522)
....-.|.+.++.|++..+.+ ..... .+...+ .++.|+++||+ ||||.+ ..+.+...++...+.+..
T Consensus 6 ~~~~~~~~~~~~~g~s~~~~g-~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~---- 78 (356)
T TIGR00901 6 LVGNTLPYWLRSKNVSLKTIG-FFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLV---- 78 (356)
T ss_pred hHHhHHHHHHHHcCCCHHHHH-HHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCC----
Confidence 344567888899999999988 55433 333333 88999999998 788864 445555555544443321
Q ss_pred CCCCCCcchhhHHHHHHHHHHHHhhhccccccccccccccCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----
Q 047115 388 GDHGGFNIGYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLVAQTFLAMLCHFK---- 463 (522)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g---- 463 (522)
+....+.......+.... .....+...+++.|.+|+++|+.+.++......++..+++.+.+.+.++.+
T Consensus 79 ------~~~~l~~l~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~ 151 (356)
T TIGR00901 79 ------PSTDLPLLAGLAFLIAFF-SATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTG 151 (356)
T ss_pred ------cchhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccc
Confidence 111222222222222222 222344445677899999999999999999999999999999988888777
Q ss_pred ----chhhHHHHHHHHHHHHHHHh-hccCCC
Q 047115 464 ----AGVFFCFGGWVAFMTTFVHF-FLPETK 489 (522)
Q Consensus 464 ----~~~~~~~~~~~~i~~~~~~~-~~~~~~ 489 (522)
|...+...++..+...+..+ ..||.+
T Consensus 152 ~~~~wr~~f~i~ai~~l~~~~~~~~~~~e~~ 182 (356)
T TIGR00901 152 LITLWGYIFFWTALLILPGLLVTLFLAKEPQ 182 (356)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 65555555554444444433 346643
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.4e-07 Score=97.23 Aligned_cols=136 Identities=13% Similarity=0.127 Sum_probs=111.4
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhhhhHH
Q 047115 58 KFDSQLLAAFTSSLYIAGLIAFLFASKVTRAFGRKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCCYSN 137 (522)
Q Consensus 58 ~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 137 (522)
|.+..+.|.+.+...++..+..++.|++.||+|+|+.+. .+.++.++
T Consensus 236 g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~---------------------------------~~~~~~~~ 282 (382)
T PRK11128 236 GYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLL---------------------------------LSAICGVV 282 (382)
T ss_pred CCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH---------------------------------HHHHHHHH
Confidence 678888999999999999999999999999999999999 88888888
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHhhhhhhhccccccccccccccccccccCCcchhHHHHHH-HHHHHHHHHHHHHHhhhh
Q 047115 138 HCSIGGAAFNIYMLILGCVLLGVGIGFTSQSIQRFNQFAYMILLSSNFETTRLSHIDFLLQ-ISICYLILSANLLNYGTQ 216 (522)
Q Consensus 138 ~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~g~~~~~~~-~~~~lG~~~~~~~~~~l~ 216 (522)
+.+..+++++.+.+++..++.|++.+...+....+ +.+ ..++++++..+..+ ....+|..+|+.+++.+.
T Consensus 283 ~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~--------~~~-~~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~ 353 (382)
T PRK11128 283 RWGLMGSTTALPWLIVIQILHCGTFTVCHLAAMRY--------IAA-RPGSEVIRLQALYSALAMGGSIAIMTVLSGFLY 353 (382)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH--------HHH-CCHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888999999999999999999988888888 888 64433388888776 566788899999999998
Q ss_pred ccCCCCchHHHHHhhHHHHHHHH
Q 047115 217 KIKGSWGWRISLAMAAVPASILT 239 (522)
Q Consensus 217 ~~~~~~gwr~~f~i~~~~~~~~~ 239 (522)
+.. |+. .++..++..++.+
T Consensus 354 ~~~---g~~-~~~~~~~~~~~~~ 372 (382)
T PRK11128 354 QHL---GAG-VFWVMALVALPAL 372 (382)
T ss_pred Hhc---cHH-HHHHHHHHHHHHH
Confidence 655 553 4555444444433
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=98.77 E-value=4.6e-08 Score=100.30 Aligned_cols=135 Identities=11% Similarity=0.052 Sum_probs=103.6
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhhhhHH
Q 047115 58 KFDSQLLAAFTSSLYIAGLIAFLFASKVTRAFGRKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCCYSN 137 (522)
Q Consensus 58 ~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 137 (522)
+.++.+.+...+...++..++.++.|+++||+|||+.+. .+..+..+
T Consensus 251 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~---------------------------------~~~~~~~~ 297 (394)
T TIGR00883 251 GLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLI---------------------------------IFTVLAAL 297 (394)
T ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHH---------------------------------HHHHHHHH
Confidence 568888999999999999999999999999999999877 55444433
Q ss_pred HH--HHHhh--hhhhHHHHHHHHHHHhhhhhhhccccccccccccccccccccCCcc-hhHHHH-HHHHHHHHHHHHHHH
Q 047115 138 HC--SIGGA--AFNIYMLILGCVLLGVGIGFTSQSIQRFNQFAYMILLSSNFETTRL-SHIDFL-LQISICYLILSANLL 211 (522)
Q Consensus 138 ~~--~~~~~--a~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~-g~~~~~-~~~~~~lG~~~~~~~ 211 (522)
.. +...+ .++.+.+.+..++.|++.+...+....+ +.| .+|+++ ++..++ .+.+..+|..++|.+
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--------~~~-~~p~~~~~~~~~~~~~~~~~~g~~~~p~~ 368 (394)
T TIGR00883 298 LAVPLLMALLDSGSFTLFFFLVLGLALIGGMYTGPMGSF--------LPE-LFPTEVRYTGASLAYNLAGAIFGGFAPYI 368 (394)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhhHHHH--------HHH-hCCccceeeEeeehhHhHHHHHhhHHHHH
Confidence 32 12222 2466777778899999998888888888 999 888887 888887 456677889899999
Q ss_pred HhhhhccCCCCchHHHHHhhHHHHH
Q 047115 212 NYGTQKIKGSWGWRISLAMAAVPAS 236 (522)
Q Consensus 212 ~~~l~~~~~~~gwr~~f~i~~~~~~ 236 (522)
++.+.+..+ +|++.++..++.++
T Consensus 369 ~g~l~~~~g--~~~~~~~~~~~~~l 391 (394)
T TIGR00883 369 AAALVAMTG--DWYAIGYYLAALAL 391 (394)
T ss_pred HHHHHHHcC--cchhHHHHHHHHHH
Confidence 988886653 38877766554443
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.74 E-value=7.3e-09 Score=104.61 Aligned_cols=175 Identities=14% Similarity=-0.045 Sum_probs=132.3
Q ss_pred HhhhccchhhHhcHHHHHHHcCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHH
Q 047115 306 FQQVTRVNVISFNAPVLFMTIKVRKSTSLLMSAVVPDGIGTVSTILPMILADKLGRTVLFLLGGIQILVSQVMIRSIMAA 385 (522)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (522)
..+..--+.+-.-.+..-+.++.++...+ ++.....+..++.+++.|++.||+.||+++.++..+..++.+...+..
T Consensus 43 lmny~Dr~~iagv~~~v~~~fni~~s~~G-ll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs~-- 119 (493)
T KOG1330|consen 43 LMNYADRYTIAGVLKEVQTYFNISDSELG-LLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFSN-- 119 (493)
T ss_pred HHHHhhhhhhhhhhHHHHHhcCCCchhcc-chhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHHH--
Confidence 44444444444444555566799999999 999999999999999999999999999999999888888877777652
Q ss_pred hhCCCCCCcchhhHHHHHHHHHHHHhhhccccccccccccccCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-c
Q 047115 386 QLGDHGGFNIGYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLVAQTFLAMLCHFK-A 464 (522)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g-~ 464 (522)
..|.++++-.+.+.+-+ ++.|+...+++|.+|..+|++.+++.+....+|+.++-.....+.++.+ |
T Consensus 120 -----------~Fwq~~l~R~~vGiGeA-s~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~W 187 (493)
T KOG1330|consen 120 -----------HFWQVLLCRGFVGIGEA-SYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWW 187 (493)
T ss_pred -----------HHHHHHHHHHHhccchh-hhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccce
Confidence 23445555555555544 5667777888999999999999999999999998887777777766665 3
Q ss_pred -hhhHHHHHHHHHHHHHHHhhccCCCCCCHHH
Q 047115 465 -GVFFCFGGWVAFMTTFVHFFLPETKYMPIEF 495 (522)
Q Consensus 465 -~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 495 (522)
+.+..-+++..+++++..++.+|..++..++
T Consensus 188 r~af~~~avl~vi~~~L~~~f~~eP~rga~~~ 219 (493)
T KOG1330|consen 188 RWAFRGSAVLGVIVGLLVFLFVREPERGARDE 219 (493)
T ss_pred EEEEEeehHHHHHHHHHHHhhccCcccccccc
Confidence 4566677777777888888888776654333
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=98.73 E-value=6.4e-08 Score=105.97 Aligned_cols=153 Identities=11% Similarity=-0.008 Sum_probs=108.6
Q ss_pred HhhhccchhhHhcHHHHHHHcCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHH
Q 047115 306 FQQVTRVNVISFNAPVLFMTIKVRKSTSLLMSAVVPDGIGTVSTILPMILADKLGRTVLFLLGGIQILVSQVMIRSIMAA 385 (522)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (522)
+.+.........-.+.+-++++++..+.+ ++.+...++..++.++.+++.||.+||+.+.++.++++++.++..+....
T Consensus 43 ~~~~~~~g~~~~~l~~iek~F~lss~~~G-~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~ 121 (633)
T TIGR00805 43 LQGLLYNGLVNSSLTTIERRFKLSTSSSG-LINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFL 121 (633)
T ss_pred HHHHHHHHHHHhhchhhhhhhCCCCCcce-eeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHh
Confidence 44443334445556677788999999999 99999999999999999999999999999999999998888877654321
Q ss_pred hhCCCCC--------------------C----------------cc--hhhHHHH-HHHHHHHHhhhccccccccccccc
Q 047115 386 QLGDHGG--------------------F----------------NI--GYAYLIL-FLICVYKAGFAFSRGPLGWLVPSE 426 (522)
Q Consensus 386 ~~~~~~~--------------------~----------------~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~e 426 (522)
. +.+.. . .. ...+..+ +.-++.+.+.+ ...++...++.|
T Consensus 122 ~-~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~-~~~~~~~~~i~d 199 (633)
T TIGR00805 122 S-GRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGAT-PIFPLGISYIDD 199 (633)
T ss_pred c-CCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCC-cchhcCchhhhc
Confidence 1 00000 0 00 1112222 22233323222 334566688899
Q ss_pred cCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047115 427 IFPLEIRSAGQSITVAVDLLFTFLVAQTFLAMLCH 461 (522)
Q Consensus 427 ~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 461 (522)
.+|++.|+...|+.+....+|..+++.+.+.+.+.
T Consensus 200 ~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~ 234 (633)
T TIGR00805 200 FAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQI 234 (633)
T ss_pred cCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhc
Confidence 99999999999999999999999999998887754
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.73 E-value=4.2e-08 Score=96.66 Aligned_cols=143 Identities=18% Similarity=0.040 Sum_probs=101.0
Q ss_pred hhhHHHhHHHHHHHHHHHHhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcchhhHHHHHHHHHHHHh
Q 047115 332 TSLLMSAVVPDGIGTVSTILPMILADKLGRTVLFLLGGIQILVSQVMIRSIMAAQLGDHGGFNIGYAYLILFLICVYKAG 411 (522)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (522)
-++ ++.+.++++.++.++.+|.++||+|||.++.++.+...++.++.+... ....++..-+.++.
T Consensus 69 yaG-flGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~--------------~F~afv~aR~l~Gi 133 (451)
T KOG2615|consen 69 YAG-FLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSR--------------NFAAFVLARFLGGI 133 (451)
T ss_pred hhh-hHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHhhhh
Confidence 455 888899999999999999999999999999999988888777666542 12222221222222
Q ss_pred hhccccccccccccccCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH---hccchhhHH---HHHHHHHH-HHHHHhh
Q 047115 412 FAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLVAQTFLAMLC---HFKAGVFFC---FGGWVAFM-TTFVHFF 484 (522)
Q Consensus 412 ~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~---~~g~~~~~~---~~~~~~i~-~~~~~~~ 484 (522)
+- +.-.+..++++|++++++|+.+++..+....+|-++||.+.+++.. ..+..++.. +..+..+. ..+..++
T Consensus 134 ~k-gnl~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a~~~v~~~~~~ 212 (451)
T KOG2615|consen 134 FK-GNLSVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVFILAAGDVTFFPWF 212 (451)
T ss_pred cc-CchHHHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHHHHHHHHHHHHHHHHHHHHh
Confidence 22 2333556888999999999999999999999999999999999887 344222222 11222222 3445667
Q ss_pred ccCCCC
Q 047115 485 LPETKY 490 (522)
Q Consensus 485 ~~~~~~ 490 (522)
+|||-.
T Consensus 213 lpETL~ 218 (451)
T KOG2615|consen 213 LPETLP 218 (451)
T ss_pred CCcccc
Confidence 888743
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=98.70 E-value=5.2e-07 Score=94.74 Aligned_cols=178 Identities=11% Similarity=0.022 Sum_probs=110.7
Q ss_pred cchhhHhcHHHHHHHcCCCCchhhHHHhHHHHHHHHHHHHhHHHHhh----hccchHHHHHH-HHHHHHHHHHHHHHHHH
Q 047115 311 RVNVISFNAPVLFMTIKVRKSTSLLMSAVVPDGIGTVSTILPMILAD----KLGRTVLFLLG-GIQILVSQVMIRSIMAA 385 (522)
Q Consensus 311 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d----r~g~~~~~~~~-~~~~~~~~~~~~~~~~~ 385 (522)
++.....+.+.++++.|.+....+ .......+.+++..++.|+++| |+|||+.+++. .....++..++......
T Consensus 19 ~~~l~~~~l~~yl~~lg~~~~~~~-~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~ 97 (477)
T TIGR01301 19 GWALQLSLLTPYVQELGIPHAWAS-IIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADI 97 (477)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchh
Confidence 345566777778899999999988 8899999999999999999999 59999988775 44444444444432110
Q ss_pred h--hCCC-CCCcchh-hHHHHHHHHHHHHhhhccccccccccccccCchhhh--hHHHHHHHHHHHHHHHHHHHHHHHH-
Q 047115 386 Q--LGDH-GGFNIGY-AYLILFLICVYKAGFAFSRGPLGWLVPSEIFPLEIR--SAGQSITVAVDLLFTFLVAQTFLAM- 458 (522)
Q Consensus 386 ~--~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r--~~~~g~~~~~~~~~~~~~~~~~~~~- 458 (522)
. ..+. ....... .+..++...+..........|. .++.+|..|+++| +.+.++.+....+|+.+++.+.+..
T Consensus 98 ~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~-rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~ 176 (477)
T TIGR01301 98 GHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPC-RAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSG 176 (477)
T ss_pred hhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHH-HHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 0 0000 0000011 1222222333333333333444 4677999998865 5788888888999998888877654
Q ss_pred -HHhc-------------c-chhhHHHHHHHHHHHHHHHhhccCCCC
Q 047115 459 -LCHF-------------K-AGVFFCFGGWVAFMTTFVHFFLPETKY 490 (522)
Q Consensus 459 -~~~~-------------g-~~~~~~~~~~~~i~~~~~~~~~~~~~~ 490 (522)
.+.. + ...|.+-+.++.+..++..+..+|...
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~ 223 (477)
T TIGR01301 177 LYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPL 223 (477)
T ss_pred HHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCC
Confidence 2221 1 123455445555556666777777543
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=4.3e-07 Score=106.98 Aligned_cols=143 Identities=12% Similarity=0.016 Sum_probs=97.4
Q ss_pred HHhHHHHHHHHHHHHhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcchhhHHHHHHHHHHHHhhhcc
Q 047115 336 MSAVVPDGIGTVSTILPMILADKLGRTVLFLLGGIQILVSQVMIRSIMAAQLGDHGGFNIGYAYLILFLICVYKAGFAFS 415 (522)
Q Consensus 336 ~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (522)
+..+...+..++.+++.|+++||++||+++........+.......... ..+.+.++++.++.+.+.+ .
T Consensus 56 l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~----------~~s~~~l~~~~~l~gi~~a-~ 124 (1140)
T PRK06814 56 LAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFH----------LNSVPLLFAALFLMGIHSA-L 124 (1140)
T ss_pred HHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHH----------HhhHHHHHHHHHHHHHHHH-h
Confidence 5666778888999999999999999999764422222221111111110 0223344444444444433 3
Q ss_pred ccccccccccccCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHhhccCCC
Q 047115 416 RGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLVAQTFLAMLCHFKAGVFFCFGGWVAFMTTFVHFFLPETK 489 (522)
Q Consensus 416 ~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~ 489 (522)
..|...+++.+.+|++.|+.++|+.++...++..++|.+.+.+.+..++..+++..++..+.++++.+++++++
T Consensus 125 ~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (1140)
T PRK06814 125 FGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGNFVILVALLMGIAVLGWLASLFIPKTG 198 (1140)
T ss_pred hchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHhhCCCCC
Confidence 45666677789999999999999999999999999999999999988876666555555555555666666553
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=98.69 E-value=4.2e-07 Score=92.53 Aligned_cols=134 Identities=15% Similarity=0.021 Sum_probs=97.1
Q ss_pred hhhHhcHHHHHHHcCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC
Q 047115 313 NVISFNAPVLFMTIKVRKSTSLLMSAVVPDGIGTVSTILPMILADKLGRTVLFLLGGIQILVSQVMIRSIMAAQLGDHGG 392 (522)
Q Consensus 313 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (522)
.......|.+.+++|++..+.+ +..+...++..++.+..|+++||+|||+.+.++.....++.+.. ..
T Consensus 17 ~~~~~~lp~l~~~~~~s~~~~g-~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~---------- 84 (355)
T TIGR00896 17 TSVGPLLPQIRSALGMSFSVAG-LLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SA---------- 84 (355)
T ss_pred ccCcccHHHHHHHhCCCHHHHH-HHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-Hh----------
Confidence 3345677888899999999999 99999999999999999999999999999988877666555443 21
Q ss_pred CcchhhHHHHHHHHHHHHhhhccccccccccccccCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 047115 393 FNIGYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLVAQTFLAMLCHFK 463 (522)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g 463 (522)
+..+..++...+.+.+.+.... .......|.+| ++|+++.++.+....++..+++.+.+.+.++.+
T Consensus 85 ---~~~~~l~~~~~~~g~g~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~ 150 (355)
T TIGR00896 85 ---PGTALLFAGTALIGVGIAIINV-LLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSG 150 (355)
T ss_pred ---ccHHHHHHHHHHHHHHHHHHhc-cchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 1122333333333333333222 22344467776 689999999999999999999998888877653
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.5e-07 Score=97.92 Aligned_cols=143 Identities=16% Similarity=0.137 Sum_probs=102.4
Q ss_pred HHhHHHHHHHHHHHHhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcchhhHHHHHHHHHHHHhhhcc
Q 047115 336 MSAVVPDGIGTVSTILPMILADKLGRTVLFLLGGIQILVSQVMIRSIMAAQLGDHGGFNIGYAYLILFLICVYKAGFAFS 415 (522)
Q Consensus 336 ~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (522)
...+...+++++|++..++++||+|||..+.++.+...++.+++..... .+.....++.-++.+...+..
T Consensus 64 ~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~----------~~~~e~li~GR~i~Gl~~gl~ 133 (485)
T KOG0569|consen 64 LIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKS----------APSFEMLILGRLIVGLACGLS 133 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHH----------hhhHHHHHHHHHHHHHHhHHH
Confidence 4667788999999999999999999999999888888888777766542 133344444445555455544
Q ss_pred ccccccccccccCchhhhhHHHHHHHHHHHHHHHHHHHHH-HHHHHhcc-chhhHHHHHHHHHHHHHHHhhccCCC
Q 047115 416 RGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLVAQTF-LAMLCHFK-AGVFFCFGGWVAFMTTFVHFFLPETK 489 (522)
Q Consensus 416 ~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~g-~~~~~~~~~~~~i~~~~~~~~~~~~~ 489 (522)
.... ..+..|..|++.||....+......++..++..+. ..+..+.. |...+.+..+..+...+...++||+.
T Consensus 134 ~~~~-pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~l~~~PESP 208 (485)
T KOG0569|consen 134 TGLV-PMYLTEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLALLPFLPESP 208 (485)
T ss_pred HHHH-HHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 4433 36678999999999998888888888877774443 33443333 55666666666677777788889864
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=9.1e-07 Score=92.93 Aligned_cols=136 Identities=10% Similarity=-0.017 Sum_probs=99.9
Q ss_pred chhhHhcHHHHHHHcCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Q 047115 312 VNVISFNAPVLFMTIKVRKSTSLLMSAVVPDGIGTVSTILPMILADKLGRTVLFLLGGIQILVSQVMIRSIMAAQLGDHG 391 (522)
Q Consensus 312 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (522)
........|.+.+++|.+..+.+ +..+...++..++.++.|++.||+|||+++..+..+..++.+++....
T Consensus 42 ~~~~~~~~p~i~~~~~~s~~~~g-l~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~-------- 112 (438)
T PRK10133 42 NNLNDILLPQFQQAFTLTNFQAG-LIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAA-------- 112 (438)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHH--------
Confidence 35566778888888999999999 999999999999999999999999999999999988888876653221
Q ss_pred CCcchhhHHHHHHHHHHHHhhhccccccccccccccCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047115 392 GFNIGYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLVAQTFLAML 459 (522)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~ 459 (522)
..++.+..++...+.+.+.+...... ..+..|..|++.|....++.+....++..+++.+.+.+.
T Consensus 113 --~a~~~~~ll~~r~l~G~g~g~~~~~~-~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~ 177 (438)
T PRK10133 113 --EIMNYTLFLVGLFIIAAGLGCLETAA-NPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_pred --hcCCHHHHHHHHHHHHHHHHHHHhhH-HHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01223334444444445444433333 344467777777767789999999999999888866543
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=98.68 E-value=2.7e-07 Score=98.35 Aligned_cols=137 Identities=10% Similarity=0.087 Sum_probs=121.3
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhhhhHH
Q 047115 58 KFDSQLLAAFTSSLYIAGLIAFLFASKVTRAFGRKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCCYSN 137 (522)
Q Consensus 58 ~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 137 (522)
|.++..+|++.+.+.+|..++.++.+++.+|+++++.+. .+.+++++
T Consensus 250 ~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~---------------------------------~~~~~~a~ 296 (524)
T PF05977_consen 250 GGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVL---------------------------------LASLLFAL 296 (524)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhH---------------------------------HHHHHHHH
Confidence 668899999999999999999999999999999999988 89999999
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHhhhhhhhccccccccccccccccccccCCcc-hhHHHHHHHHHHHHHHHHHHHHhhhh
Q 047115 138 HCSIGGAAFNIYMLILGCVLLGVGIGFTSQSIQRFNQFAYMILLSSNFETTRL-SHIDFLLQISICYLILSANLLNYGTQ 216 (522)
Q Consensus 138 ~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~-g~~~~~~~~~~~lG~~~~~~~~~~l~ 216 (522)
+.+..+++++.+..++.-++.|++.........+. +.+ ..|++. ||.+++++.....+..+|.++.+.+.
T Consensus 297 ~~~~lal~~~~~~~~~~l~l~G~~~~~~~~~~~t~--------~Q~-~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la 367 (524)
T PF05977_consen 297 ALLLLALSPSFWLALIALFLAGAAWIIANSSLNTL--------VQL-SVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLA 367 (524)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHH-hCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999888887777 888 888888 99999999999999999999999888
Q ss_pred ccCCCCchHHHHHhhHHHHHHHH
Q 047115 217 KIKGSWGWRISLAMAAVPASILT 239 (522)
Q Consensus 217 ~~~~~~gwr~~f~i~~~~~~~~~ 239 (522)
+.. |-+..+.++++..++..
T Consensus 368 ~~~---g~~~al~~a~~~lll~~ 387 (524)
T PF05977_consen 368 DHF---GVRTALLIAGAALLLSA 387 (524)
T ss_pred HHh---CHHHHHHHHHHHHHHHH
Confidence 654 67878777665544433
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=98.68 E-value=2.9e-07 Score=95.32 Aligned_cols=137 Identities=12% Similarity=0.123 Sum_probs=111.5
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhhhhHHH
Q 047115 59 FDSQLLAAFTSSLYIAGLIAFLFASKVTRAFGRKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCCYSNH 138 (522)
Q Consensus 59 ~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 138 (522)
.+....|.+.+...+...++.++.|++.||+|||+.+. ++.++.+++
T Consensus 251 ~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~---------------------------------~~~~l~~l~ 297 (396)
T TIGR00882 251 QGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALL---------------------------------IAGTIMSVR 297 (396)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHH---------------------------------HHHHHHHHH
Confidence 45667889999999999999999999999999999999 888888888
Q ss_pred HHHHhhhhhhHHHHHHHHHHHhhhhhhhccccccccccccccccccccCCcc-hhHHHH-HHHHHHHHHHHHHHHHhhhh
Q 047115 139 CSIGGAAFNIYMLILGCVLLGVGIGFTSQSIQRFNQFAYMILLSSNFETTRL-SHIDFL-LQISICYLILSANLLNYGTQ 216 (522)
Q Consensus 139 ~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~-g~~~~~-~~~~~~lG~~~~~~~~~~l~ 216 (522)
..+...++|.+.+++.+++.|++.+........+ ..+ ..+++. +...+. .+....+|..+++.+++.+.
T Consensus 298 ~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~--------~~~-~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~ 368 (396)
T TIGR00882 298 IIGSSFATTALEVVILKMLHAFEVPFLLVGCFKY--------ITS-QFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMY 368 (396)
T ss_pred HHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHH--------HHH-hCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHH
Confidence 8877788899999999999999877665555555 666 666666 666655 67889999999999999888
Q ss_pred ccCCCCchHHHHHhhHHHHHHHHH
Q 047115 217 KIKGSWGWRISLAMAAVPASILTI 240 (522)
Q Consensus 217 ~~~~~~gwr~~f~i~~~~~~~~~~ 240 (522)
+.. ||+..|.+.++..++..+
T Consensus 369 ~~~---G~~~~f~~~~~~~~i~~~ 389 (396)
T TIGR00882 369 DSI---GFQGAYLVLGCIVLLFTL 389 (396)
T ss_pred Hhc---ccHHHHHHHHHHHHHHHH
Confidence 654 799999887776555443
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=98.67 E-value=6.8e-07 Score=93.64 Aligned_cols=117 Identities=20% Similarity=0.145 Sum_probs=97.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhhhhHHHH
Q 047115 60 DSQLLAAFTSSLYIAGLIAFLFASKVTRAFGRKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCCYSNHC 139 (522)
Q Consensus 60 ~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 139 (522)
++.+.+++.+...++..++.+++++++||+|||+++. .+..+.+++.
T Consensus 255 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~---------------------------------~~~~~~~~~~ 301 (437)
T TIGR00792 255 DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFA---------------------------------GGILLMVLGY 301 (437)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHH---------------------------------HHHHHHHHHH
Confidence 3456777888889999999999999999999999999 8888887777
Q ss_pred HHHhhh-hhhHHHHHHHHHHHhhhhhhhccccccccccccccccccccC-------Ccc-hhHHHHHHHHHHHHHHHHHH
Q 047115 140 SIGGAA-FNIYMLILGCVLLGVGIGFTSQSIQRFNQFAYMILLSSNFET-------TRL-SHIDFLLQISICYLILSANL 210 (522)
Q Consensus 140 ~~~~~a-~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~i~~~~~~-------~~~-g~~~~~~~~~~~lG~~~~~~ 210 (522)
+...+. ++.+.+++..++.|++.+...+...++ ++| ..+ +++ |...++.+....+|..+++.
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--------~~~-~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~ 372 (437)
T TIGR00792 302 LIFFFAGSNLPLILVLIILAGFGQNFVTGLVWAL--------VAD-TVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGF 372 (437)
T ss_pred HHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHH--------Hhh-hhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHH
Confidence 766654 456777788889999999888887777 887 654 556 99999999999999999999
Q ss_pred HHhhhhcc
Q 047115 211 LNYGTQKI 218 (522)
Q Consensus 211 ~~~~l~~~ 218 (522)
+.+.+.+.
T Consensus 373 i~g~ll~~ 380 (437)
T TIGR00792 373 LVGLILGI 380 (437)
T ss_pred HHHHHHHH
Confidence 88877654
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.65 E-value=3.5e-07 Score=87.47 Aligned_cols=147 Identities=12% Similarity=0.029 Sum_probs=112.5
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhhhhH
Q 047115 57 GKFDSQLLAAFTSSLYIAGLIAFLFASKVTRAFGRKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCCYS 136 (522)
Q Consensus 57 ~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 136 (522)
+|+|.+|...+.+...+|..+| ++.|.+.|++|++.++. +|.+...
T Consensus 32 l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~gp~~~l~---------------------------------iG~~~~~ 77 (250)
T PF06813_consen 32 LGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRFGPWVVLL---------------------------------IGAVLGF 77 (250)
T ss_pred hCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhcchHHHHH---------------------------------HHHHHHH
Confidence 3889999999999999999875 88999999999999999 9999888
Q ss_pred HHHHHHhhh-------hhhHHHHHHHHHHHhhhhhhhccccccccccccccccccccCCcchhHHHHHHHHHHHHHHHHH
Q 047115 137 NHCSIGGAA-------FNIYMLILGCVLLGVGIGFTSQSIQRFNQFAYMILLSSNFETTRLSHIDFLLQISICYLILSAN 209 (522)
Q Consensus 137 ~~~~~~~~a-------~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~lG~~~~~ 209 (522)
+|..+...+ .++|.+.+..++.|.+.+.....+... ..+ .+|++||.+.++.-...+++..+-.
T Consensus 78 ~GY~~~~l~~~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt--------~~~-NFP~~RG~vvgilk~~~GLSaai~t 148 (250)
T PF06813_consen 78 VGYGLLWLAVSGRIPSLPVWLMCLFLFLGGNSSCWFNTASLVT--------CVR-NFPRSRGTVVGILKGFFGLSAAIFT 148 (250)
T ss_pred HHHHHHHHHHhCccCccchHHHHHHHHHHcccHHHhhhHHHHH--------HHH-hCccccCceehhhhHHHHhHHHHHH
Confidence 888877654 366888888888888877766666555 566 6788779999999999999887777
Q ss_pred HHHhhhhccCCCCchHHHHHhhHHHHHHHHHHhcccCCCh
Q 047115 210 LLNYGTQKIKGSWGWRISLAMAAVPASILTIGSLFLPETP 249 (522)
Q Consensus 210 ~~~~~l~~~~~~~gwr~~f~i~~~~~~~~~~~~~~lpesp 249 (522)
.+...+.+.. .-+..+.++..+.++.++..++++..|
T Consensus 149 ~i~~~~f~~~---~~~fll~la~~~~~v~l~~~~~vr~~~ 185 (250)
T PF06813_consen 149 QIYSAFFGDD---PSSFLLFLAVLPAVVCLVAMFFVRPVP 185 (250)
T ss_pred HHHHHHcCCC---hHHHHHHHHHHHHHHHHHHhhheeccC
Confidence 6655554332 344555556666666555555554433
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.64 E-value=7.4e-07 Score=91.66 Aligned_cols=145 Identities=13% Similarity=0.005 Sum_probs=104.5
Q ss_pred HhcHHHHHHHcCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcc
Q 047115 316 SFNAPVLFMTIKVRKSTSLLMSAVVPDGIGTVSTILPMILADKLGRTVLFLLGGIQILVSQVMIRSIMAAQLGDHGGFNI 395 (522)
Q Consensus 316 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (522)
.+++=..+++.+-.+.-.+ ........+.++.-++.+++.+|+|+-+++.+++.+..+=++.+...
T Consensus 391 ~tFLfWHled~~~~~~LfG-v~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L------------- 456 (618)
T KOG3762|consen 391 FTFLFWHLEDLGGIKTLFG-VVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYL------------- 456 (618)
T ss_pred HHHHHHHHhhcCCcceeee-ehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHh-------------
Confidence 3344334567775555555 66777778888888999999999999999988887777666655543
Q ss_pred hhhHHHHHHHHHHHHhhhccccccccccccccCchhhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHhccch-hhHHHHHH
Q 047115 396 GYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVD-LLFTFLVAQTFLAMLCHFKAG-VFFCFGGW 473 (522)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~ 473 (522)
+++|..+.+=.+-+..++..+..+. +|++...|++.|.+++++..... .+|-.+|+.+.|.+.++++.. .|.+++..
T Consensus 457 ~n~W~vLPieilqgit~aliWaa~~-sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giA 535 (618)
T KOG3762|consen 457 QNPWMVLPIEILQGITHALIWAAII-SYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIA 535 (618)
T ss_pred cCchheeeHHHHHHHHHHHHHHHHH-HHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHH
Confidence 4556666666666666666666554 77789999999999999887654 577788888889999888743 34444443
Q ss_pred HH
Q 047115 474 VA 475 (522)
Q Consensus 474 ~~ 475 (522)
++
T Consensus 536 cl 537 (618)
T KOG3762|consen 536 CL 537 (618)
T ss_pred HH
Confidence 33
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=98.61 E-value=7.3e-07 Score=92.10 Aligned_cols=139 Identities=12% Similarity=-0.066 Sum_probs=102.7
Q ss_pred CCchhHHHHHHHHHH-HHHHHHHHHHHHhhhhhccccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhhhhH
Q 047115 58 KFDSQLLAAFTSSLY-IAGLIAFLFASKVTRAFGRKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCCYS 136 (522)
Q Consensus 58 ~~~~~~~~~~~s~~~-~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 136 (522)
|+++++.|++.+... ....++.++.|++.||+|+|+.+. .+.++.+
T Consensus 239 G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~---------------------------------~~~~~~~ 285 (390)
T TIGR02718 239 GWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFI---------------------------------LGVGLAG 285 (390)
T ss_pred CCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHH---------------------------------HHHHHHH
Confidence 779999999988876 467778999999999999999988 6655543
Q ss_pred HHHHHHhh------hhhhHHHHHHHHHHHhhhhhhhccccccccccccccccccccCC-cc-hhHHHHHHHHHHHHHHHH
Q 047115 137 NHCSIGGA------AFNIYMLILGCVLLGVGIGFTSQSIQRFNQFAYMILLSSNFETT-RL-SHIDFLLQISICYLILSA 208 (522)
Q Consensus 137 ~~~~~~~~------a~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~i~~~~~~~-~~-g~~~~~~~~~~~lG~~~~ 208 (522)
+..+.... .++...+....++.+++.|...+..... +.+ ..++ ++ ++..++.+....+|..++
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--------~~~-~~~~~~~~g~~~~~~~~~~~lg~~~g 356 (390)
T TIGR02718 286 SLALLWFAQAAFWLAPGIAVAWSCSAFGSLITGITSVAIYTA--------FMR-FAGDGDQAGTDVTAVQSTRDLGELIA 356 (390)
T ss_pred HHHHHHHHHHHcccCCcHHHHHHHHHHHHHHHHHHHHHHHHH--------HHH-HhCcccchHHHHHHHHHHHHHHHHHH
Confidence 33222211 1233444555566677777777776666 777 6555 66 999999999999999999
Q ss_pred HHHHhhhhccCCCCchHHHHHhhHHHHHHHHHH
Q 047115 209 NLLNYGTQKIKGSWGWRISLAMAAVPASILTIG 241 (522)
Q Consensus 209 ~~~~~~l~~~~~~~gwr~~f~i~~~~~~~~~~~ 241 (522)
+.+++.+.+.. ||+..|.+.++..++....
T Consensus 357 ~~~~G~l~~~~---G~~~~f~~~~~~~l~a~~~ 386 (390)
T TIGR02718 357 SSIAGYLTDRF---GYAGGFLSGTVLAVLAILL 386 (390)
T ss_pred HHHHHHHHHHH---ccHHHHHHHHHHHHHHHHH
Confidence 99999888654 7888998877766655443
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.60 E-value=6.4e-07 Score=85.69 Aligned_cols=169 Identities=15% Similarity=0.124 Sum_probs=112.6
Q ss_pred hhhccchhhHhcHHHHHHHcCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHh
Q 047115 307 QQVTRVNVISFNAPVLFMTIKVRKSTSLLMSAVVPDGIGTVSTILPMILADKLGRTVLFLLGGIQILVSQVMIRSIMAAQ 386 (522)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (522)
......+.+..|.|.+-++.|++.++.. .+.....++..+ .++.|.+.||+|.+.++.++.....++..++......
T Consensus 13 ~~~Gt~Y~Fs~yS~~Lk~~l~~sq~~l~-~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~- 89 (250)
T PF06813_consen 13 LCSGTTYTFSAYSPQLKSRLGYSQSQLN-TLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSG- 89 (250)
T ss_pred HhcCcccchhhhhHHHHHHhCCCHHHHH-HHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhC-
Confidence 3334556788999999999999999998 888888888776 4888999999999999999999999998877665421
Q ss_pred hCCCCCCcchhhHHHHHHHHHHHHhhhccc-cccccccccccCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Q 047115 387 LGDHGGFNIGYAYLILFLICVYKAGFAFSR-GPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLVAQTFLAMLCHFKAG 465 (522)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~ 465 (522)
..+....|...+..+ ..+.+.++ .........+.|| ++||++.|+.-....+++.+-..+...+.+.....
T Consensus 90 -----~i~~~~~~~~~~~~~--l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~~~~~ 161 (250)
T PF06813_consen 90 -----RIPSLPVWLMCLFLF--LGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGDDPSS 161 (250)
T ss_pred -----ccCccchHHHHHHHH--HHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCCChHH
Confidence 111122222222222 23333222 2222222347788 58999999999999999988888877776654334
Q ss_pred hhHHHHHHHHHHHHHHHhhcc
Q 047115 466 VFFCFGGWVAFMTTFVHFFLP 486 (522)
Q Consensus 466 ~~~~~~~~~~i~~~~~~~~~~ 486 (522)
.+.+.+....+.+++...+++
T Consensus 162 fll~la~~~~~v~l~~~~~vr 182 (250)
T PF06813_consen 162 FLLFLAVLPAVVCLVAMFFVR 182 (250)
T ss_pred HHHHHHHHHHHHHHHHhhhee
Confidence 444444444444444444443
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.3e-07 Score=93.69 Aligned_cols=151 Identities=11% Similarity=0.083 Sum_probs=118.5
Q ss_pred CCCCchhhHHHhHHHHHHHHHHHHhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcchhhHHHHHHHH
Q 047115 327 KVRKSTSLLMSAVVPDGIGTVSTILPMILADKLGRTVLFLLGGIQILVSQVMIRSIMAAQLGDHGGFNIGYAYLILFLIC 406 (522)
Q Consensus 327 g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (522)
+-.+.+.+ +++....+.+++.+++.|.+.||+|+|..++++...+..+.+++++.- ..+..++.-.
T Consensus 102 ~~e~~~iG-~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~-------------sy~~l~vAR~ 167 (464)
T KOG3764|consen 102 DRENTQIG-LLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGN-------------SYPMLFVARS 167 (464)
T ss_pred cccccchh-HHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcc-------------hhHHHHHHHH
Confidence 44556777 899999999999999999999999999999999999999988888742 2223444444
Q ss_pred HHHHhhhccccccccccccccCchhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-chhhHHHHHHHHHHHHHHHhh
Q 047115 407 VYKAGFAFSRGPLGWLVPSEIFPLEI-RSAGQSITVAVDLLFTFLVAQTFLAMLCHFK-AGVFFCFGGWVAFMTTFVHFF 484 (522)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~e~~p~~~-r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~i~~~~~~~~ 484 (522)
+-+.+.+.... ....+.++.+|.+. |++++|+.-.+-.+|-.++|++.|.+++..| ..+|.+++.++++-..+.++.
T Consensus 168 LQgvgsA~~~t-sglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~v 246 (464)
T KOG3764|consen 168 LQGVGSAFADT-SGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLV 246 (464)
T ss_pred HhhhhHHHHHh-hhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHhe
Confidence 55555554433 44466688898876 7999999999999999999999999999998 566888888887777777776
Q ss_pred ccCCCCCC
Q 047115 485 LPETKYMP 492 (522)
Q Consensus 485 ~~~~~~~~ 492 (522)
++.++.++
T Consensus 247 i~p~~~~~ 254 (464)
T KOG3764|consen 247 IEPTEMDP 254 (464)
T ss_pred eCccccCc
Confidence 66655443
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.5e-06 Score=102.51 Aligned_cols=132 Identities=9% Similarity=-0.045 Sum_probs=111.3
Q ss_pred CCchh-HHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhhhhH
Q 047115 58 KFDSQ-LLAAFTSSLYIAGLIAFLFASKVTRAFGRKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCCYS 136 (522)
Q Consensus 58 ~~~~~-~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 136 (522)
+++.. +.+++.+...++..++.+++|+++||+++|+.+. ++.++.+
T Consensus 264 g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~---------------------------------~~~~~~~ 310 (1146)
T PRK08633 264 GLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVP---------------------------------LGALGLA 310 (1146)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchh---------------------------------HHHHHHH
Confidence 56777 8999999999999999999999999999999988 8888888
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHhhhhhhhccccccccccccccccccccCCcc-hhHHHHHHHHHHHHHHHHHHHHhhh
Q 047115 137 NHCSIGGAAFNIYMLILGCVLLGVGIGFTSQSIQRFNQFAYMILLSSNFETTRL-SHIDFLLQISICYLILSANLLNYGT 215 (522)
Q Consensus 137 ~~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~-g~~~~~~~~~~~lG~~~~~~~~~~l 215 (522)
++.++..+..+.+.+++..++.|++.+...+...++ +.+ ..|+++ |+++++.+....+|.++++.++..+
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--------~~~-~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l 381 (1146)
T PRK08633 311 LSLFLLPTAPSLASVLVLFFLFGFSAGLFIVPLNAL--------IQF-RAPEKELGKVLAANNFLQNVGMLLFLALTTLF 381 (1146)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHH--------Hhh-cCCccchhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888899999999999888888888 889 888888 9999999999999998888887766
Q ss_pred hccCCCCchHHHHHhhHH
Q 047115 216 QKIKGSWGWRISLAMAAV 233 (522)
Q Consensus 216 ~~~~~~~gwr~~f~i~~~ 233 (522)
.... .++...+.+.+.
T Consensus 382 ~~~~--~~~~~~~~~~~~ 397 (1146)
T PRK08633 382 SGLG--LSPAGLFYLIAL 397 (1146)
T ss_pred HHhc--cCHHHHHHHHHH
Confidence 5321 245555555443
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.6e-06 Score=93.19 Aligned_cols=147 Identities=10% Similarity=0.054 Sum_probs=102.3
Q ss_pred HcCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcchhhHHHHHH
Q 047115 325 TIKVRKSTSLLMSAVVPDGIGTVSTILPMILADKLGRTVLFLLGGIQILVSQVMIRSIMAAQLGDHGGFNIGYAYLILFL 404 (522)
Q Consensus 325 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (522)
....+..... +..+...++..+|.++.|.++||+|||++++.+..+..++.+..++. .+.+...++
T Consensus 112 ~~c~~~~~~~-~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a-------------~~~~~~~~~ 177 (521)
T KOG0255|consen 112 LVCDSSTLVA-LGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFA-------------PNYWMFLIF 177 (521)
T ss_pred eeeCcHhHHH-HHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHh-------------CcHHHHHHH
Confidence 3344555555 78888999999999999999999999999999999988888666554 223333344
Q ss_pred HHHHHHhhhccccccccccccccCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHhh
Q 047115 405 ICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLVAQTFLAMLCHFKAGVFFCFGGWVAFMTTFVHFF 484 (522)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~ 484 (522)
-++.+++.+ +...+...+..|.+++++|+.+..+ ......++.+++...+++.. +|........+..+..++.+++
T Consensus 178 Rfl~G~~~~-~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~~~~~~~~~~~~~l 253 (521)
T KOG0255|consen 178 RFLSGFFGS-GPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWIISIPSGLFLLLWFL 253 (521)
T ss_pred HHHHHhhcc-chhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHHc
Confidence 344333333 3444566777899999999999999 88888888888888888877 3433333333333333333555
Q ss_pred ccCCC
Q 047115 485 LPETK 489 (522)
Q Consensus 485 ~~~~~ 489 (522)
.+|.+
T Consensus 254 ~~Es~ 258 (521)
T KOG0255|consen 254 PPESP 258 (521)
T ss_pred cCcCh
Confidence 55653
|
|
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.6e-06 Score=81.44 Aligned_cols=312 Identities=11% Similarity=0.049 Sum_probs=167.8
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhhh
Q 047115 55 NYGKFDSQLLAAFTSSLYIAGLIAFLFASKVTRAFGRKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCC 134 (522)
Q Consensus 55 ~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 134 (522)
..+++...++|.+.-...-...+...+.|-++||-|||+.-+ .-.+.
T Consensus 65 stYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracv---------------------------------tycit 111 (454)
T KOG4332|consen 65 STYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACV---------------------------------TYCIT 111 (454)
T ss_pred hhcCccCCccceeeecccchHHHHHHHHHHHHhhhcccccee---------------------------------eehHH
Confidence 455777788888877777777888888999999999999888 66666
Q ss_pred hHHHHHHHhhhhhhHHHHHHHHHHHhhhhhhhccccccccccccccccccccCCcc--hhHHHHH-HHHHHHHH----HH
Q 047115 135 YSNHCSIGGAAFNIYMLILGCVLLGVGIGFTSQSIQRFNQFAYMILLSSNFETTRL--SHIDFLL-QISICYLI----LS 207 (522)
Q Consensus 135 ~~~~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~--g~~~~~~-~~~~~lG~----~~ 207 (522)
+.++|+ .-.++++-.++++|++-|+..+..+..-.++ ++.| --+++. ....+.. .=..-+|. ++
T Consensus 112 YiLsCi-TKhSpqYkVLmVGR~LGGiaTsLLFSaFEsW-------liaE-Hnekr~FeqqWls~TFskA~ffgNglvAii 182 (454)
T KOG4332|consen 112 YILSCI-TKHSPQYKVLMVGRVLGGIATSLLFSAFESW-------LIAE-HNEKRGFEQQWLSVTFSKAVFFGNGLVAII 182 (454)
T ss_pred HHHHHH-hhcCCceEEEeehhhhhhHHHHHHHHHHHHH-------HHHH-hhhccCChHhhhhHHHHHHHHhhccHHHHH
Confidence 666554 4578899999999999999999988887776 1455 433332 2222221 11122332 23
Q ss_pred HHHHHhhhhccCCCCchHHHHHhhHHHHHHHHHHhcccCCChHHHHHhCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHH
Q 047115 208 ANLLNYGTQKIKGSWGWRISLAMAAVPASILTIGSLFLPETPNSIIQRNKDHQKAEEILQIVRNTTDVKAELDDIIRASS 287 (522)
Q Consensus 208 ~~~~~~~l~~~~~~~gwr~~f~i~~~~~~~~~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (522)
+.+.+-.+.+..+ .|--.+|-.++....+...+.+ ..|-..-++ +.+.++.+.+.++.- .
T Consensus 183 aGlfgn~lvd~~s-lGPVAPFdAAacfLaigmAvil-----~~W~ENygd-ps~~kdlltqf~gaa-------------~ 242 (454)
T KOG4332|consen 183 AGLFGNLLVDTFS-LGPVAPFDAAACFLAIGMAVIL-----SSWSENYGD-PSENKDLLTQFKGAA-------------R 242 (454)
T ss_pred HHHHHHHHHHHhc-cCCCCchHHHHHHHHHHHHHHH-----hhhhhccCC-hhhhHHHHHHhhHhH-------------H
Confidence 3333333332221 2444556555444444332221 123222233 333333333322110 0
Q ss_pred hhccccchhHHHHHHHHHHhhhccchhhHhcHHHHH-HHcCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhhccch--HH
Q 047115 288 KIIHRIYRPQLVMAILIPFQQVTRVNVISFNAPVLF-MTIKVRKSTSLLMSAVVPDGIGTVSTILPMILADKLGRT--VL 364 (522)
Q Consensus 288 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~--~~ 364 (522)
.+.+ .++..++...-.......+.....|.|.+- ++.+ ...+ .++.-+.+..++|+-+..++..|-..| ..
T Consensus 243 aiaS--D~ki~LLG~iqsLFE~smytFVFLWTPaLspn~e~---iPhG-fiFatFMlASmLGSSla~Rl~s~s~~~ve~y 316 (454)
T KOG4332|consen 243 AIAS--DEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEE---IPHG-FIFATFMLASMLGSSLASRLLSRSSPKVESY 316 (454)
T ss_pred HHhc--chHHHHHHHHHHHHhhhhheeeeeecccCCCCccc---CCch-hHHHHHHHHHHHhhHHHHHHHhcCCcccchH
Confidence 1111 122222222222444444444556666532 0111 1234 566667777778877777776665443 34
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCCCCcchhhHHHHHHHHHHHHhhhccccccccccccccCchhhhhHHHHHHH
Q 047115 365 FLLGGIQILVSQVMIRSIMAAQLGDHGGFNIGYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITV 441 (522)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~ 441 (522)
+.+.+......+.+....... .+.+......++..|.+-...+..+..+... -+...|.+.|++.+-...
T Consensus 317 mqivf~vs~a~l~Lpilt~~v------sP~kes~~~s~i~F~~~E~cvGlfwPSimkm-RsqyIPEearstimNfFR 386 (454)
T KOG4332|consen 317 MQIVFLVSIAALLLPILTSSV------SPSKESPSESLIGFCLFEACVGLFWPSIMKM-RSQYIPEEARSTIMNFFR 386 (454)
T ss_pred HHHHHHHHHHHHHHHHHHhcc------CCCcCCchHHHHHHHHHHHHHhhcchHHHHH-HHhhCCHHHHhhhhhhee
Confidence 444444444443333332211 1112333344666777777777777666544 368889999987654433
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.50 E-value=2.5e-07 Score=98.14 Aligned_cols=145 Identities=15% Similarity=0.011 Sum_probs=127.0
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhcc--ccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhhhh
Q 047115 58 KFDSQLLAAFTSSLYIAGLIAFLFASKVTRAFGR--KASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCCY 135 (522)
Q Consensus 58 ~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Gr--k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 135 (522)
+.+..+.+.+.++..+...++.++.|+++|+... +.+.. ++++..
T Consensus 329 g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~---------------------------------~~ll~~ 375 (509)
T KOG2504|consen 329 GLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFL---------------------------------LTLLIA 375 (509)
T ss_pred CCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHH---------------------------------HHHHHH
Confidence 6799999999999999999999999999999884 33444 788888
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHhhhhhhhccccccccccccccccccccCCcc-hhHHHHHHHHHHHHHHHHHHHHhh
Q 047115 136 SNHCSIGGAAFNIYMLILGCVLLGVGIGFTSQSIQRFNQFAYMILLSSNFETTRL-SHIDFLLQISICYLILSANLLNYG 214 (522)
Q Consensus 136 ~~~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~-g~~~~~~~~~~~lG~~~~~~~~~~ 214 (522)
+++.+.+.++++++.++...++.|++.|......... +.| ....++ ..+.|+.....+++.++||.+++.
T Consensus 376 gl~~~~~p~~~~~~~l~~~~~~fG~~~g~~~~l~~~i--------~~~-~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~ 446 (509)
T KOG2504|consen 376 GLARLFLPFATTYVGLIVFSILFGFCVGSFSSLTPVI--------LVD-LVGLEKLSNAYGLLLLFQGIGALVGPPIAGL 446 (509)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH--------HHH-HcChhhcchHHHHHHHHhHHHHHcCccccee
Confidence 8888899999999999999999999999888887777 899 999999 999999999999999999999998
Q ss_pred hhccCCCCchHHHHHhhHHHHHHHHHHhcccC
Q 047115 215 TQKIKGSWGWRISLAMAAVPASILTIGSLFLP 246 (522)
Q Consensus 215 l~~~~~~~gwr~~f~i~~~~~~~~~~~~~~lp 246 (522)
+.+..+ +|...|+..++..++....++..|
T Consensus 447 ~~d~tg--~Y~~~f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 447 LYDITG--NYDHAFYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred eeeccC--CeeeehhhcChHHHHHHHHHHHhH
Confidence 887765 588899988887777666655555
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.6e-06 Score=90.96 Aligned_cols=150 Identities=16% Similarity=0.068 Sum_probs=117.5
Q ss_pred HcCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcchhhHHHHHH
Q 047115 325 TIKVRKSTSLLMSAVVPDGIGTVSTILPMILADKLGRTVLFLLGGIQILVSQVMIRSIMAAQLGDHGGFNIGYAYLILFL 404 (522)
Q Consensus 325 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (522)
+..++..+.+ ++.+....+.+++.+..+++.||+|-|+++..+.++..++.++...... ...+..+++
T Consensus 67 ~~~ws~~~k~-~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~-----------~~~~~~~~~ 134 (466)
T KOG2532|consen 67 EYDWSSTEKG-LIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAAS-----------IGFYLLLVL 134 (466)
T ss_pred eecCCHHHHH-HHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHH-----------hcchhhHHH
Confidence 4577888888 8999999999999999999999999999999999998888888777642 222333444
Q ss_pred HHHHHHhhhccccccccccccccCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccc-hhhHHHHHHHHHHHHHHH
Q 047115 405 ICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLVAQTFLAMLCH-FKA-GVFFCFGGWVAFMTTFVH 482 (522)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~g~-~~~~~~~~~~~i~~~~~~ 482 (522)
-.+.+.+.+..+..+ ..+.+.-.|+++|++..++..+..+++.++.-++.|.+.+. .|| ..|++.+++..+..++.+
T Consensus 135 R~lqGl~~g~~~pa~-~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~ 213 (466)
T KOG2532|consen 135 RFLQGLGQGVLFPAI-GSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWF 213 (466)
T ss_pred HHHhHHHHhHHHhhh-hceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHH
Confidence 455555555544444 46668999999999999999999999999999999999998 786 567777777777666655
Q ss_pred hhccC
Q 047115 483 FFLPE 487 (522)
Q Consensus 483 ~~~~~ 487 (522)
++..|
T Consensus 214 ~~~~d 218 (466)
T KOG2532|consen 214 LFYSD 218 (466)
T ss_pred HHhcC
Confidence 55543
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.8e-06 Score=84.20 Aligned_cols=133 Identities=19% Similarity=0.204 Sum_probs=107.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhhhhHHHHHH
Q 047115 62 QLLAAFTSSLYIAGLIAFLFASKVTRAFGRKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCCYSNHCSI 141 (522)
Q Consensus 62 ~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 141 (522)
...++..+.+.++..++.++.|.++||+|||+.+. .+.....++.+.
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~---------------------------------~~~~~~~~~~~~ 85 (338)
T COG0477 39 LLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLI---------------------------------IGLLLFLLGTLL 85 (338)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhccccccchHHHH---------------------------------HHHHHHHHHHHH
Confidence 47899999999999999999999999999998887 666555666666
Q ss_pred Hhhhhh--hHHHHHHHHHHHhhhhhhhccccccccccccccccccccCC-cc-hhHHHHHHH-HHHHHHHHHHHHHhhhh
Q 047115 142 GGAAFN--IYMLILGCVLLGVGIGFTSQSIQRFNQFAYMILLSSNFETT-RL-SHIDFLLQI-SICYLILSANLLNYGTQ 216 (522)
Q Consensus 142 ~~~a~~--~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~i~~~~~~~-~~-g~~~~~~~~-~~~lG~~~~~~~~~~l~ 216 (522)
..+..+ .+.+++.|+++|++.|...+....+ +.| +.++ ++ +...+.... ...+|..+++.++..+.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (338)
T COG0477 86 LALAPNVGLALLLILRLLQGLGGGGLLPVASAL--------LSE-WFPEATERGLAVGLVTLGAGALGLALGPLLAGLLL 156 (338)
T ss_pred HHhCccchHHHHHHHHHHHHhhhHHHHHHHHHH--------HHH-hcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666665 8999999999999999999999999 999 8886 45 888888887 58888888887777666
Q ss_pred ccCCCCchHHHHHhhHHHHHH
Q 047115 217 KIKGSWGWRISLAMAAVPASI 237 (522)
Q Consensus 217 ~~~~~~gwr~~f~i~~~~~~~ 237 (522)
.. ...+||..|.+.......
T Consensus 157 ~~-~~~~~~~~~~~~~~~~~~ 176 (338)
T COG0477 157 GA-LLWGWRAAFLLAALLGLL 176 (338)
T ss_pred HH-HhcchHHHHHHHHHHHHH
Confidence 55 445899966665554433
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=98.47 E-value=0.00027 Score=73.18 Aligned_cols=130 Identities=18% Similarity=0.034 Sum_probs=83.0
Q ss_pred hcHHHHHHHcCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcch
Q 047115 317 FNAPVLFMTIKVRKSTSLLMSAVVPDGIGTVSTILPMILADKLGRTVLFLLGGIQILVSQVMIRSIMAAQLGDHGGFNIG 396 (522)
Q Consensus 317 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (522)
..+..|+...|+++...+ ..-....+.++.++++..++.+|+|..|.-.++...-..++.+........ .. +.+..
T Consensus 279 ~lmt~yl~~~G~s~~~ig-i~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~--~~-~~~~~ 354 (432)
T PF06963_consen 279 GLMTAYLKSQGYSPSVIG-IFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAP--GS-PFSSI 354 (432)
T ss_pred HHHHHHHHHCCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcC--CC-Cchhh
Confidence 344556677799999999 888899999999999999999999998887777665554444333332211 00 00111
Q ss_pred hhHHHHHHHHHHHHhhhccccccccccccccCchhhhhHHHHHHHHHHHHHHHHH
Q 047115 397 YAYLILFLICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLV 451 (522)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~ 451 (522)
.....+..+.+.-.|.- ++-....-+..|..|+++||+..|+-+...++...+.
T Consensus 355 s~~~l~~gi~~SR~GLW-~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~ 408 (432)
T PF06963_consen 355 SAYLLLGGIALSRIGLW-SFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLS 408 (432)
T ss_pred HHHHHHHHHHHHHHHHH-hhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHH
Confidence 22222222222222221 1222223455799999999999999988888877543
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=98.46 E-value=9.2e-07 Score=90.36 Aligned_cols=170 Identities=13% Similarity=0.111 Sum_probs=133.8
Q ss_pred HHHHHHHHHhhhhhcchhhccccccHHHHHHhhhhhhhcccCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 047115 8 SCIVAATSGLIFGYDIGVSGGVTLMEPFLKKCFLEVYKKMKEDPKISNYGKFDSQLLAAFTSSLYIAGLIAFLFASKVTR 87 (522)
Q Consensus 8 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d 87 (522)
...+....++.+.+|... +.|.+.++.+. +.+.+..|.+.+...+.-++...+..++.+
T Consensus 226 ~l~v~g~~~~Y~vfdqqf-------~~y~~~~f~~~--------------~~g~~~~G~l~s~~v~~E~~~m~~~p~li~ 284 (412)
T PF01306_consen 226 VLFVIGVAAIYDVFDQQF-------PIYFASFFQSA--------------GQGNQMYGYLWSVQVFLEALMMFFSPWLIN 284 (412)
T ss_dssp HHHHHHHHHHHHHHHHHH-------HHHHHHTSSSH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHhccc--------------ccChhHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445556777777663 34555554321 235667999999999999999999999999
Q ss_pred hhccccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhhhhHHHHHHHhhhhhhHHHHHHHHHHHhhhhhhhc
Q 047115 88 AFGRKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCCYSNHCSIGGAAFNIYMLILGCVLLGVGIGFTSQ 167 (522)
Q Consensus 88 r~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~ 167 (522)
|+|.|+.++ ++.++.++=.+++++++|.+.+.+.+.+.|+-.+....
T Consensus 285 rig~k~~Ll---------------------------------lag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lv 331 (412)
T PF01306_consen 285 RIGAKNLLL---------------------------------LAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLV 331 (412)
T ss_dssp HH-HHHHHH---------------------------------HHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHH
T ss_pred hcChHhHHH---------------------------------HHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHH
Confidence 999999999 99999999999999999999999999999999999999
Q ss_pred cccccccccccccccccccCCcc-hhHHHH-HHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHhhHHHHHHHHHHhc
Q 047115 168 SIQRFNQFAYMILLSSNFETTRL-SHIDFL-LQISICYLILSANLLNYGTQKIKGSWGWRISLAMAAVPASILTIGSL 243 (522)
Q Consensus 168 ~~~~~~~~~~~~~i~~~~~~~~~-g~~~~~-~~~~~~lG~~~~~~~~~~l~~~~~~~gwr~~f~i~~~~~~~~~~~~~ 243 (522)
+...| +++ .+|+|. ++...+ .+.+..+|..+.+.+++.+.+.. |.+..|++.+...++..+...
T Consensus 332 a~fkY--------I~~-~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~---G~~~tylimg~iv~~~~li~~ 397 (412)
T PF01306_consen 332 AAFKY--------ITA-HFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRI---GFQHTYLIMGLIVLPFTLISA 397 (412)
T ss_dssp HHHHH--------HHH-HS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH--------HHH-hCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhc---CcHHHHHHHHHHHHHHHHHhe
Confidence 99999 999 999888 777766 47888999999999988888554 788888776665555444443
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=5.2e-06 Score=87.50 Aligned_cols=118 Identities=7% Similarity=-0.046 Sum_probs=92.7
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhhhhHH
Q 047115 58 KFDSQLLAAFTSSLYIAGLIAFLFASKVTRAFGRKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCCYSN 137 (522)
Q Consensus 58 ~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 137 (522)
|.++...++......++..++.++++++.||+|+|+++. .+.++.++
T Consensus 260 g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~---------------------------------~g~~~~~i 306 (448)
T PRK09848 260 NDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFL---------------------------------IGALLGTC 306 (448)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHH---------------------------------HHHHHHHH
Confidence 444444444445456778889999999999999999999 88888888
Q ss_pred HHHHHhhhh--hhHHHHHHHHHHHhhhhhhhccccccccccccccccccccCC-------cc-hhHHHHHHHHHHHHHHH
Q 047115 138 HCSIGGAAF--NIYMLILGCVLLGVGIGFTSQSIQRFNQFAYMILLSSNFETT-------RL-SHIDFLLQISICYLILS 207 (522)
Q Consensus 138 ~~~~~~~a~--~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~i~~~~~~~-------~~-g~~~~~~~~~~~lG~~~ 207 (522)
+.+...+.+ +++.+++..++.|+|.+...+...++ .+| ..++ ++ |...+..+....+|..+
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~~~~~~al--------~~~-~~~~~~~~~g~r~~G~~~~~~~~~~klg~ai 377 (448)
T PRK09848 307 GYLLFFWVSVWSLPVALVALAIASIGQGVTMTVMWAL--------EAD-TVEYGEYLTGVRIEGLTYSLFSFTRKCGQAI 377 (448)
T ss_pred HHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHH--------HHH-hhhhhHHhhCccchhHHHHHHHHHHHHHHHH
Confidence 777776643 56777778889999999998888777 777 6543 35 88999999999999999
Q ss_pred HHHHHhhhhc
Q 047115 208 ANLLNYGTQK 217 (522)
Q Consensus 208 ~~~~~~~l~~ 217 (522)
++.+.+.+.+
T Consensus 378 g~~i~g~~l~ 387 (448)
T PRK09848 378 GGSIPAFILG 387 (448)
T ss_pred HHHHHHHHHH
Confidence 9888776653
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=98.42 E-value=8.5e-07 Score=94.74 Aligned_cols=147 Identities=18% Similarity=0.205 Sum_probs=95.8
Q ss_pred HHHHHHHcCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcchhh
Q 047115 319 APVLFMTIKVRKSTSLLMSAVVPDGIGTVSTILPMILADKLGRTVLFLLGGIQILVSQVMIRSIMAAQLGDHGGFNIGYA 398 (522)
Q Consensus 319 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (522)
.+.+..++|-+++.. ++.....+...++.++.|+++|.+|||..++.+.++..++.++.... .+.
T Consensus 67 l~~I~~diG~~~~~~--w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA-------------~~~ 131 (599)
T PF06609_consen 67 LPYINADIGGSDNWS--WFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATA-------------QNM 131 (599)
T ss_pred HHHHHHhcCCCccch--HHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcC-------------CcH
Confidence 455567777765544 57777889999999999999999999999999999998888877653 222
Q ss_pred HHHHHHHHHHHHhhhccccccccccccccCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-hhhHHHHHHHHHH
Q 047115 399 YLILFLICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLVAQTFLAMLCHFKA-GVFFCFGGWVAFM 477 (522)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~i~ 477 (522)
...+....+.+.+.+ ...+....++|..|.+.|..+.++...........++.+...+..+.+| +.+++...+..+.
T Consensus 132 ~~~iag~~l~GvgaG--~~~~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~ 209 (599)
T PF06609_consen 132 NTFIAGMVLYGVGAG--VQELAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIA 209 (599)
T ss_pred HHHHHHHHHHHHhhH--HHHHHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHHH
Confidence 334444444444433 2334445568999999998887776655444444555555555444444 3344444444444
Q ss_pred HHHHH
Q 047115 478 TTFVH 482 (522)
Q Consensus 478 ~~~~~ 482 (522)
.+..+
T Consensus 210 ~vl~~ 214 (599)
T PF06609_consen 210 LVLIF 214 (599)
T ss_pred HHHHH
Confidence 43333
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.41 E-value=8.1e-06 Score=79.64 Aligned_cols=332 Identities=8% Similarity=0.030 Sum_probs=191.3
Q ss_pred CCchhHHH-HHHHHHHHHHHHHHHHHHHhhhhhccccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhhhhH
Q 047115 58 KFDSQLLA-AFTSSLYIAGLIAFLFASKVTRAFGRKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCCYS 136 (522)
Q Consensus 58 ~~~~~~~~-~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 136 (522)
+++..+.. -+.=...-.+.+.-.+.=.+.|-..-|++++ .-.+...
T Consensus 37 NlT~~~l~~evyPvwTYSYLv~LvpvFlLTD~lrYKPviv---------------------------------lq~ls~v 83 (433)
T KOG3810|consen 37 NLTEDQLTNEVYPVWTYSYLVGLVPVFLLTDYLRYKPVVV---------------------------------LQALSGV 83 (433)
T ss_pred CccHHHHhcccccchhHHHHHHHHHHHHHhhhhhcceeee---------------------------------eeccchh
Confidence 45555432 2222333455666667778899999999999 6666666
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHhhhhhhhccccccccccccccccccccCCcc-hhHHHHHHHHHHHHHHHHHHHHhhh
Q 047115 137 NHCSIGGAAFNIYMLILGCVLLGVGIGFTSQSIQRFNQFAYMILLSSNFETTRL-SHIDFLLQISICYLILSANLLNYGT 215 (522)
Q Consensus 137 ~~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~-g~~~~~~~~~~~lG~~~~~~~~~~l 215 (522)
...++.-+.++.+.+=+.-++.|...+ ...+-.+| +-+ ..++++ .++.+...+..-.|-..|..++-.+
T Consensus 84 ~~w~~lv~g~sV~~mQvlE~FyG~~tA-aEIAYysY--------IYs-~Vd~~~Yqrvt~y~RaA~L~g~~~g~vlaQlL 153 (433)
T KOG3810|consen 84 PVWIMLVFGPSVKAMQVLEFFYGPATA-AEIAYYSY--------IYS-KVDPEMYKRVTGYCRAAFLVGKFVGSVLAQLL 153 (433)
T ss_pred HHHHHHHhcCCchheeeehhhcChHHH-HHHhhhhe--------eee-ecCHHHHHHHHHHhHHHHHHHhHHHhHHHHHH
Confidence 777778889999999999999998876 33444555 778 788888 9999999999999998888888777
Q ss_pred hccCCCCchHHHHHhhHHHHHHHHHHhcccCCChHHHHHhCCCHHH-HHHHHHHHcCCcch----HHHHHHHHHHHHhhc
Q 047115 216 QKIKGSWGWRISLAMAAVPASILTIGSLFLPETPNSIIQRNKDHQK-AEEILQIVRNTTDV----KAELDDIIRASSKII 290 (522)
Q Consensus 216 ~~~~~~~gwr~~f~i~~~~~~~~~~~~~~lpesp~~~~~~~~~~~~-~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~ 290 (522)
.... ..+++..-.+......+.....+++|..+|....+.+ .++ .....++.....+. +..+..+.++..+..
T Consensus 154 vs~~-~~sy~~LN~ISL~~~~ia~~~A~fLP~v~rSl~f~~~-~~~~~v~~~e~~~~~~~~~~~l~~~~~~l~~~l~~~y 231 (433)
T KOG3810|consen 154 VSLE-TLSYTTLNYISLAEVTIAVLLALFLPRVKRSLYFHRL-EDKISVGDLEEMNPQASYMSYLRGAFVLLWRDLQECY 231 (433)
T ss_pred hhhc-ccchhhhchhhHHHHHHHHHHHhhCCCCchhhhhhcc-cccceeccchhcCccchhhHHHHHHHHHHHHHHHHHh
Confidence 6543 2345555566666666777778888887765544433 221 11111111111111 111222222222333
Q ss_pred cccchhHHHHHHHHH-HhhhccchhhHhcHHHHHHHcCCCCchh--hHHHhHHHHHHHHHHHHhHHHHhhhccchHHHHH
Q 047115 291 HRIYRPQLVMAILIP-FQQVTRVNVISFNAPVLFMTIKVRKSTS--LLMSAVVPDGIGTVSTILPMILADKLGRTVLFLL 367 (522)
Q Consensus 291 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~ 367 (522)
+ ++.++-..+. ....++++-...|...+.++.. +.... .+..-....+.+.++.+..|.+.-++.|..-+.+
T Consensus 232 ~----np~ll~WSlWwAl~scg~~QV~nY~Q~LW~~~~-~~~~~vyNG~veAv~tlLGa~~~~~~g~l~i~w~r~g~~ll 306 (433)
T KOG3810|consen 232 S----NPRLLKWSLWWALASCGYYQVTNYTQILWKEVA-PNPANVYNGAVEAVSTLLGAIAALAAGYLNINWNRWGDLLL 306 (433)
T ss_pred c----CchhhhhHHHHHHhhchhHHHHHHHHHHHHhhC-CCchhhhcCHHHHHHHHHHHHHHHHHHheeeccchhhHHHH
Confidence 2 2222233333 4455566667778777777653 22211 1134455666777788888888777766644433
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCCCCcchhhHHHHHHHHHHHHhhhccccccccccccccCchhhhhHHHHHHHHHHHHH
Q 047115 368 GGIQILVSQVMIRSIMAAQLGDHGGFNIGYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLF 447 (522)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~ 447 (522)
+......+.+++... .....|+......++...+....+ +....+++....+.-|-.+|+...+..+.
T Consensus 307 ~~~s~~~agllf~m~-----------~t~~Iw~~Ya~yvlfr~~y~l~it-iA~~~iA~nL~~e~~gLvFGiNTFvAl~l 374 (433)
T KOG3810|consen 307 AVGSAVQAGLLFIMA-----------QTQHIWVCYAGYVLFRVIYQLTIT-IATFQIARNLSSELFGLVFGINTFVALIL 374 (433)
T ss_pred HHHHHHhhhhhhhhh-----------cccceehhhhhHHHHHhhHhhhhh-HHHHHHHHhhhhhhheeeeehHHHHHHHH
Confidence 333222222222111 123345555555555555554433 33233345555566677777776666555
Q ss_pred HHHH
Q 047115 448 TFLV 451 (522)
Q Consensus 448 ~~~~ 451 (522)
..+.
T Consensus 375 Qsil 378 (433)
T KOG3810|consen 375 QSIL 378 (433)
T ss_pred HHhh
Confidence 5443
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.8e-06 Score=86.34 Aligned_cols=130 Identities=11% Similarity=-0.027 Sum_probs=101.0
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhhhhH
Q 047115 57 GKFDSQLLAAFTSSLYIAGLIAFLFASKVTRAFGRKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCCYS 136 (522)
Q Consensus 57 ~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 136 (522)
+|+++++.+...+.+..+..++.++.+++.||+|+|+.+. ++.++..
T Consensus 173 ~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~---------------------------------~~~~l~~ 219 (310)
T TIGR01272 173 LGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLA---------------------------------FNAFLAV 219 (310)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHH---------------------------------HHHHHHH
Confidence 4789999999999999999999999999999999999888 7777777
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHhhhhhhhccccccccccccccccccccCCcchhHHHHHHHHHHHHHHHHHHHHhhhh
Q 047115 137 NHCSIGGAAFNIYMLILGCVLLGVGIGFTSQSIQRFNQFAYMILLSSNFETTRLSHIDFLLQISICYLILSANLLNYGTQ 216 (522)
Q Consensus 137 ~~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~lG~~~~~~~~~~l~ 216 (522)
++.++....++...+ .+-++.|++.+..+|...+. ..+ ..+++.+++.++. ....+|..+.|.+.+.+.
T Consensus 220 ~~~~l~~~~~~~~~~-~~~~l~g~~~s~i~P~~~s~--------a~~-~~~~~~~~asai~-~~~~~Gg~i~P~l~G~la 288 (310)
T TIGR01272 220 LLSIGAALTHGYVAM-WFVLALGLFNSIMFPTIFSL--------ALN-ALGRHTSQGSGIL-CLAIVGGAIVPLLQGSLA 288 (310)
T ss_pred HHHHHHHHcCCHHHH-HHHHHHHHHHHHHHHHHHHH--------HHh-hhhhhhhhhHHHH-HHHHhcchHHHHHHHHHH
Confidence 776666555443333 35558899999999998888 777 6665446666765 556688999998877777
Q ss_pred ccCCCCchHHHHHhhHH
Q 047115 217 KIKGSWGWRISLAMAAV 233 (522)
Q Consensus 217 ~~~~~~gwr~~f~i~~~ 233 (522)
+.. |.+..|++..+
T Consensus 289 d~~---g~~~a~~v~~~ 302 (310)
T TIGR01272 289 DCL---GIQLAFALPVP 302 (310)
T ss_pred Hhc---cchHHHHHHHH
Confidence 543 67777765443
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.37 E-value=6.8e-06 Score=88.20 Aligned_cols=139 Identities=19% Similarity=0.125 Sum_probs=103.3
Q ss_pred hHHHhHHHHHHHHHHHHhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcchhhHHHHHHHHHHHHhhh
Q 047115 334 LLMSAVVPDGIGTVSTILPMILADKLGRTVLFLLGGIQILVSQVMIRSIMAAQLGDHGGFNIGYAYLILFLICVYKAGFA 413 (522)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (522)
+ ++.+...++..+++++.|+++|++|||+.+.++.+...++.++..... +.+...+.-++.+.+.+
T Consensus 92 s-~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~-------------~~~~l~~GR~l~G~g~G 157 (513)
T KOG0254|consen 92 G-LLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAP-------------SWYQLIVGRILTGLGVG 157 (513)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhh-------------hHHHHHHHHHHhccchh
Confidence 5 888999999999999999999999999999999999999988887752 33445555555555555
Q ss_pred ccccccccccccccCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cchhhHHHHHHHHHHHHHHHhhccCC
Q 047115 414 FSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLVAQTFLAMLCHF--KAGVFFCFGGWVAFMTTFVHFFLPET 488 (522)
Q Consensus 414 ~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~~i~~~~~~~~~~~~ 488 (522)
.... +...+.+|..|++.||...+..+....+|..++ ++.+....+. +|...+..+.+..+...+..++.||+
T Consensus 158 ~~~~-~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~-~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~pes 232 (513)
T KOG0254|consen 158 GASV-LAPVYISEIAPAHIRGTLVSLYQLFITIGILLG-YCINYGTSKVYAGWRIPLGLALIPAVILALGMLFLPES 232 (513)
T ss_pred hhhh-cchhhHhhcCChhhhHHHHHHHHHHHHHHHHHH-HHHhhhhccCCccHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 4433 444788999999999999999888888666555 6666666553 56655555454444444457777875
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.36 E-value=4.8e-06 Score=79.06 Aligned_cols=143 Identities=8% Similarity=-0.075 Sum_probs=104.3
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccCcccchhhhhhhhhhhhhhhhcccccccch-hhhhH
Q 047115 58 KFDSQLLAAFTSSLYIAGLIAFLFASKVTRAFGRKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCC-SCCYS 136 (522)
Q Consensus 58 ~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~ 136 (522)
|+|+...+.+.|..+.-.++.+++.|.++||+|++-..+ .+ .+...
T Consensus 296 GlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv---------------------------------~~a~~~tl 342 (459)
T KOG4686|consen 296 GLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWV---------------------------------ASACILTL 342 (459)
T ss_pred CCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhH---------------------------------HHHHHHHH
Confidence 889999999999999999999999999999999998877 44 34444
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHhhhhhhhccccccccccccccccccccCCcc-hhHHHHHHHHHHHHHHHHHHHHhhh
Q 047115 137 NHCSIGGAAFNIYMLILGCVLLGVGIGFTSQSIQRFNQFAYMILLSSNFETTRL-SHIDFLLQISICYLILSANLLNYGT 215 (522)
Q Consensus 137 ~~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~-g~~~~~~~~~~~lG~~~~~~~~~~l 215 (522)
++.....|+ .+.=..+-.++|+.....-.+.-.. ++. ..|+++ |++.+..+...++|..+.+++++.+
T Consensus 343 ~~H~~l~Ft--~lsPy~~m~~lGLsysllAcslWP~--------va~-~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i 411 (459)
T KOG4686|consen 343 LGHSGLFFT--FLSPYTSMTFLGLSYSLLACSLWPC--------VAS-LVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFI 411 (459)
T ss_pred HHhhhHHhh--hccHHHHHHHHhhhHHHHHHHHhhh--------hhh-hCCHHHhcchHHHHHHHHhhhhhHHhhhhhee
Confidence 444444443 3333345566777666554434444 677 788899 9999999999999999999999999
Q ss_pred hccCCCCchHHHHHhhHH-HHHHHHHHhcc
Q 047115 216 QKIKGSWGWRISLAMAAV-PASILTIGSLF 244 (522)
Q Consensus 216 ~~~~~~~gwr~~f~i~~~-~~~~~~~~~~~ 244 (522)
.+..+.+.|--.|.+... .++....+.+.
T Consensus 412 ~d~~g~y~~le~ffl~~~~~aL~svgil~~ 441 (459)
T KOG4686|consen 412 ADGDGSYDNLEAFFLIIGLMALTSVGILFY 441 (459)
T ss_pred ecCCCchhhHHHHHHHHHHHHHHHHHHHhh
Confidence 987765667666655433 44444333333
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=98.34 E-value=9.2e-06 Score=85.07 Aligned_cols=115 Identities=12% Similarity=0.040 Sum_probs=101.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhhhhHHHHHH
Q 047115 62 QLLAAFTSSLYIAGLIAFLFASKVTRAFGRKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCCYSNHCSI 141 (522)
Q Consensus 62 ~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 141 (522)
...+.+..+..++..++.+++++++||+|+|+.+. .+.++.+++.++
T Consensus 260 ~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~---------------------------------~~~~~~~~~~~~ 306 (428)
T PF13347_consen 260 GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYI---------------------------------IGLLLAALGFLL 306 (428)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehh---------------------------------hhHHHHHHHHHH
Confidence 46778888999999999999999999999999999 999999999998
Q ss_pred Hhhhh--hhHHHHHHHHHHHhhhhhhhccccccccccccccccccccC-------Ccc-hhHHHHHHHHHHHHHHHHHHH
Q 047115 142 GGAAF--NIYMLILGCVLLGVGIGFTSQSIQRFNQFAYMILLSSNFET-------TRL-SHIDFLLQISICYLILSANLL 211 (522)
Q Consensus 142 ~~~a~--~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~i~~~~~~-------~~~-g~~~~~~~~~~~lG~~~~~~~ 211 (522)
..+.+ |.+.+++.-++.|++.+...+...++ ++| ..+ +++ |...+......-+|..+++.+
T Consensus 307 ~~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~--------~ad-~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i 377 (428)
T PF13347_consen 307 LFFLGPGSPWLVLILFILAGIGYGAFFVIPWAM--------LAD-VIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAI 377 (428)
T ss_pred HHHHHhhhHHHHHHHHHHhHhhhcccccccccc--------ccc-chhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHH
Confidence 88886 99999999999999999999888888 888 665 355 999999999999999999988
Q ss_pred Hhhhhcc
Q 047115 212 NYGTQKI 218 (522)
Q Consensus 212 ~~~l~~~ 218 (522)
.+.+.+.
T Consensus 378 ~g~~l~~ 384 (428)
T PF13347_consen 378 VGLLLAL 384 (428)
T ss_pred HHHHHHH
Confidence 7766543
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.23 E-value=1.9e-05 Score=83.95 Aligned_cols=116 Identities=13% Similarity=0.096 Sum_probs=90.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhhhhHHHH
Q 047115 60 DSQLLAAFTSSLYIAGLIAFLFASKVTRAFGRKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCCYSNHC 139 (522)
Q Consensus 60 ~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 139 (522)
+....+.+.+...++..++.+++++++||+|+|+.+. .+..+..++.
T Consensus 264 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~---------------------------------~~~~~~~~~~ 310 (473)
T PRK10429 264 DADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWA---------------------------------GASIFPVLSC 310 (473)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHH---------------------------------HHHHHHHHHH
Confidence 3445667777777899999999999999999999998 7777666555
Q ss_pred HHHhh-----hhhhHHHHHHHHHHHhhhhhhhccccccccccccccccccccC-------Ccc-hhHHHHHHHHHHHHHH
Q 047115 140 SIGGA-----AFNIYMLILGCVLLGVGIGFTSQSIQRFNQFAYMILLSSNFET-------TRL-SHIDFLLQISICYLIL 206 (522)
Q Consensus 140 ~~~~~-----a~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~i~~~~~~-------~~~-g~~~~~~~~~~~lG~~ 206 (522)
+...+ ..+.+.+++.-++.|++.+...+...++ ++| ..+ +++ |...+......-+|..
T Consensus 311 ~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~am--------~ad-~id~~e~~tG~R~~G~~~s~~~~~~K~~~a 381 (473)
T PRK10429 311 GVLLLMGLAAPHNALLIVIAGILLNIGTALFWVLQVIM--------VAD-TVDYGEYKLGIRCESIAYSVQTMVVKGGSA 381 (473)
T ss_pred HHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHH--------Hhh-hhhhhhHhcCccchhHHHHHHHHHHHHHHH
Confidence 54432 3456777778888999999888888777 888 644 444 7799999999999999
Q ss_pred HHHHHHhhhhc
Q 047115 207 SANLLNYGTQK 217 (522)
Q Consensus 207 ~~~~~~~~l~~ 217 (522)
+++.+.+.+.+
T Consensus 382 l~~~i~g~~l~ 392 (473)
T PRK10429 382 FAAFFIGVVLG 392 (473)
T ss_pred HHHHHHHHHHH
Confidence 99888777654
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.21 E-value=8.5e-06 Score=83.78 Aligned_cols=177 Identities=11% Similarity=0.074 Sum_probs=120.8
Q ss_pred HHHHHHHHHHhhhccchhhHhcHHHHH-HHcC----CCCchhhHHHhHHHHHHHHHHHHhHHHHhhh-ccchHHHHHHHH
Q 047115 297 QLVMAILIPFQQVTRVNVISFNAPVLF-MTIK----VRKSTSLLMSAVVPDGIGTVSTILPMILADK-LGRTVLFLLGGI 370 (522)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~~~~~~~ 370 (522)
.++..++.-+..-.+++.+..-+..|+ .+.+ ++++++. -+...+...--+..+++||++|| +|+|+.+..+.+
T Consensus 22 ~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~-~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGai 100 (498)
T COG3104 22 GLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHAT-GLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAI 100 (498)
T ss_pred hHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhH-HHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 333333333555555555554444444 3444 9988888 67777777777888999999999 599999999999
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCCcchhhHHHHHHHHHHHHhhhccccccccccccccCchh--hhhHHHHHHHHHHHHHH
Q 047115 371 QILVSQVMIRSIMAAQLGDHGGFNIGYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFPLE--IRSAGQSITVAVDLLFT 448 (522)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~--~r~~~~g~~~~~~~~~~ 448 (522)
++.++.+++.... ... .....+...+...+.+ ..-+-...+.+|.+|++ .|-.+.++..+..++|+
T Consensus 101 l~~iGh~~L~~~~----------~~~-~~gl~i~L~~I~iG~G-l~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGs 168 (498)
T COG3104 101 LMAIGHLVLAISS----------VSG-PGGLYIGLALIIVGTG-LFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGS 168 (498)
T ss_pred HHHHHHHHHhccc----------ccc-ccHHHHHHHHHHhccc-cccccHHHHHHHhcCCCCcccCCCccEEEEEeehHH
Confidence 9999998887641 001 1122222222223333 23444556668888754 26677888888899999
Q ss_pred HHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHhhcc
Q 047115 449 FLVAQTFLAMLCHFKAGVFFCFGGWVAFMTTFVHFFLP 486 (522)
Q Consensus 449 ~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~ 486 (522)
+++|.+.+++.+..++..-+..+++....+++.+...+
T Consensus 169 l~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~ 206 (498)
T COG3104 169 LIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGR 206 (498)
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHcc
Confidence 99999999999999987777777777777776666554
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=98.20 E-value=1.6e-08 Score=106.47 Aligned_cols=144 Identities=17% Similarity=0.184 Sum_probs=98.7
Q ss_pred hhHHHhHHHHHHHHHHHHhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcchhhHHHHHHHHHHHHhh
Q 047115 333 SLLMSAVVPDGIGTVSTILPMILADKLGRTVLFLLGGIQILVSQVMIRSIMAAQLGDHGGFNIGYAYLILFLICVYKAGF 412 (522)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (522)
.. +..+...++..+|+++.|+++||+|||+.+..+..+..++.++...... ..+.+...+.-++.+.+.
T Consensus 48 ~~-~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~----------~~~~~~~~~~R~~~G~~~ 116 (451)
T PF00083_consen 48 SS-LLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAPS----------YNNFWMLLIGRFLIGFGI 116 (451)
T ss_pred HH-HHHHHHHhhhccccccccccccccccccccccccccccccccccccccc----------cccccccccccccccccc
Confidence 44 6788889999999999999999999999999998888888877766420 012333444444444444
Q ss_pred hccccccccccccccCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh---ccchhhHHHHHHHHHHHHHHHhhccCC
Q 047115 413 AFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLVAQTFLAMLCH---FKAGVFFCFGGWVAFMTTFVHFFLPET 488 (522)
Q Consensus 413 ~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~i~~~~~~~~~~~~ 488 (522)
+.. .+....+..|..|+++|+...++.+....+|..++..+....... ..|.....++.+..+...+...++||+
T Consensus 117 g~~-~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~~~~~~pES 194 (451)
T PF00083_consen 117 GGA-YVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVLLLRFFLPES 194 (451)
T ss_pred ccc-ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 433 345567889999999999998888887777766665554333222 225555555555555555566778876
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=98.19 E-value=2.3e-05 Score=81.02 Aligned_cols=147 Identities=15% Similarity=0.190 Sum_probs=116.0
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhhhhHHH
Q 047115 59 FDSQLLAAFTSSLYIAGLIAFLFASKVTRAFGRKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCCYSNH 138 (522)
Q Consensus 59 ~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 138 (522)
.+.+..+.+.++..++-.+.....+++..|+|.|+++. ++.+.+++=
T Consensus 240 ~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~---------------------------------~a~~~~~vR 286 (400)
T PF03825_consen 240 YSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLL---------------------------------LALVAYAVR 286 (400)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH---------------------------------HHHHHHHHH
Confidence 46677788888888999999999999999999999999 999999999
Q ss_pred HHHHhhh-hhhHHHHH----HHHHHHhhhhhhhccccccccccccccccccccCCcc-hhHHHHHHH-HHHHHHHHHHHH
Q 047115 139 CSIGGAA-FNIYMLIL----GCVLLGVGIGFTSQSIQRFNQFAYMILLSSNFETTRL-SHIDFLLQI-SICYLILSANLL 211 (522)
Q Consensus 139 ~~~~~~a-~~~~~l~~----~r~l~G~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~-g~~~~~~~~-~~~lG~~~~~~~ 211 (522)
..+.+.. ++.+.... ...++|+..|..+.+...| +.+ ..|++. ++..+++.+ ..++|..+|..+
T Consensus 287 ~~l~a~~~~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~y--------i~~-~~p~~~~at~Q~l~~~~~~Glg~~iG~~i 357 (400)
T PF03825_consen 287 WLLYAYFSDPWPFIVALQLLGQLLHGLTFGLFHAASVRY--------IDR-IAPPELRATAQGLYSALSFGLGGAIGSLI 357 (400)
T ss_pred HHHHHHhcCCcHHHHHHHHHHHhhhhHHHHHHHHHHHHH--------HHH-hCCccchHHHHHHHHHHHhhHHHHHHHHH
Confidence 9888887 55444333 3457999999999999999 999 999998 999999876 468999999999
Q ss_pred HhhhhccCC---CCchHHHHHhhHHHHHHHHHHh-cccCC
Q 047115 212 NYGTQKIKG---SWGWRISLAMAAVPASILTIGS-LFLPE 247 (522)
Q Consensus 212 ~~~l~~~~~---~~gwr~~f~i~~~~~~~~~~~~-~~lpe 247 (522)
++.+.+..+ ...|...+.+.++..++..+.+ .+.+|
T Consensus 358 gG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~fk~ 397 (400)
T PF03825_consen 358 GGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVILFKP 397 (400)
T ss_pred HHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 999887543 1345566666655554444333 33444
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=98.19 E-value=3.1e-05 Score=78.84 Aligned_cols=135 Identities=17% Similarity=0.145 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhhhhHHHHHHHhh
Q 047115 65 AAFTSSLYIAGLIAFLFASKVTRAFGRKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCCYSNHCSIGGA 144 (522)
Q Consensus 65 ~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 144 (522)
+.+.-+-.+...+.-+.+.+..+|..-+.-.. .+.++..++.++.++
T Consensus 62 ~~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~---------------------------------~~~~l~~~g~l~va~ 108 (402)
T PF02487_consen 62 GAVLLADILPSLLVKLIAPFFIHRVPYWIRIL---------------------------------ICVALSAAGMLLVAF 108 (402)
T ss_pred hHHHHHHHHHHHHHHHHhHhhhhhccchHHHH---------------------------------HHHHHHHHHHhheee
Confidence 33444445566677777778888876544445 567788899999999
Q ss_pred hhhhHHHHHHHHHHHhhhhhhhccccccccccccccccccccCCcchhHHHHHHHHHHHHHHHHHHHHhhhhccCCCCch
Q 047115 145 AFNIYMLILGCVLLGVGIGFTSQSIQRFNQFAYMILLSSNFETTRLSHIDFLLQISICYLILSANLLNYGTQKIKGSWGW 224 (522)
Q Consensus 145 a~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~gw 224 (522)
++|.+.=+++-++.+++.|........+ .. ++++ ...+-+..+.+.+.++|+..-..+.. .+ .+-
T Consensus 109 ~~~v~~~l~Gv~las~ssg~GE~tfL~l--------t~--~y~~---~~l~~wssGTG~aGl~Ga~~y~~lT~-~g-~s~ 173 (402)
T PF02487_consen 109 SPSVWVRLLGVVLASLSSGLGEVTFLSL--------TH--FYGK---SSLSAWSSGTGGAGLVGALYYLGLTT-LG-LSP 173 (402)
T ss_pred ccchhHHHHHHHHHhhhhhhhHHHHHHH--------HH--hcCc---cccccccCCcChhhHHHHHHHHHHHH-hC-cCH
Confidence 9999998999999999999877776665 33 3443 34556777777788888877666654 21 345
Q ss_pred HHHHHhhHHHHHHHHH-HhcccCC
Q 047115 225 RISLAMAAVPASILTI-GSLFLPE 247 (522)
Q Consensus 225 r~~f~i~~~~~~~~~~-~~~~lpe 247 (522)
|..+.+..+..++..+ .++.+|.
T Consensus 174 ~~tll~~~~lp~~~~~~~f~~L~~ 197 (402)
T PF02487_consen 174 RTTLLIMLVLPAIFLLSYFFLLPS 197 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcc
Confidence 6666665554443333 3334443
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.18 E-value=2e-05 Score=83.17 Aligned_cols=152 Identities=12% Similarity=-0.027 Sum_probs=110.4
Q ss_pred HHcCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcchhhHHHHH
Q 047115 324 MTIKVRKSTSLLMSAVVPDGIGTVSTILPMILADKLGRTVLFLLGGIQILVSQVMIRSIMAAQLGDHGGFNIGYAYLILF 403 (522)
Q Consensus 324 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (522)
++.++..++.+ ...+.+.++.+++.+.++.+.||++..+.+....+...+..++-... .+.+..++
T Consensus 74 edl~~~~~~l~-~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~-------------~s~~~~ia 139 (495)
T KOG2533|consen 74 EDLKLVGNQLG-VLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAV-------------HSFPGLIA 139 (495)
T ss_pred cccchhhhhhh-hHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHH-------------hhhHHHHH
Confidence 45677788888 89999999999999999999999996655544433333322222221 22344455
Q ss_pred HHHHHHHhhhccccccccccccccCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH------hccc-hhhHHHHHHHHH
Q 047115 404 LICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLVAQTFLAMLC------HFKA-GVFFCFGGWVAF 476 (522)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~g~-~~~~~~~~~~~i 476 (522)
.-++.+..-+.++++.. .+++..+.+++|+.-+|+.++...+++++++.+...+.. ..|| +.|++-+++.++
T Consensus 140 lr~llGl~es~~wP~~~-~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~ 218 (495)
T KOG2533|consen 140 LRFLLGLFESGGWPGVV-AILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLV 218 (495)
T ss_pred HHHHHHHHhcccchHHH-HHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHH
Confidence 55555666666655554 666899999999999999999999999999998877644 2234 467788888888
Q ss_pred HHHHHHhhccCCCC
Q 047115 477 MTTFVHFFLPETKY 490 (522)
Q Consensus 477 ~~~~~~~~~~~~~~ 490 (522)
.++++++++|+...
T Consensus 219 ~gi~~f~~lp~~P~ 232 (495)
T KOG2533|consen 219 LGIVVFFFLPDNPS 232 (495)
T ss_pred HHheEEEEecCChh
Confidence 88888999987654
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.00019 Score=78.52 Aligned_cols=143 Identities=14% Similarity=0.104 Sum_probs=112.6
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHhhhh-hccccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhhhhH
Q 047115 58 KFDSQLLAAFTSSLYIAGLIAFLFASKVTRA-FGRKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCCYS 136 (522)
Q Consensus 58 ~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr-~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 136 (522)
+++.+....+...+....-+..+++|.++|+ +||++.+. .+.+++.
T Consensus 19 g~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl---------------------------------~~~ii~~ 65 (654)
T TIGR00926 19 GFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTIL---------------------------------YLSIVYV 65 (654)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH---------------------------------HHHHHHH
Confidence 6788888888899988889999999999996 69999999 8999999
Q ss_pred HHHHHHhhhhh--------hHHHHHHHHHHHhhhhhhhccccccccccccccccccccCCc---c-hhHHHHHHHHHHHH
Q 047115 137 NHCSIGGAAFN--------IYMLILGCVLLGVGIGFTSQSIQRFNQFAYMILLSSNFETTR---L-SHIDFLLQISICYL 204 (522)
Q Consensus 137 ~~~~~~~~a~~--------~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~---~-g~~~~~~~~~~~lG 204 (522)
+|.++.+++.. ....+++-.+..+|.|++-+...+. ..| -++++ + ...+.++..+.++|
T Consensus 66 lG~~llai~a~~~~~~~~~~~~~l~gLaLia~G~GgiKp~vsaf--------~gd-qf~~~~~~~~~s~F~~fY~~iNiG 136 (654)
T TIGR00926 66 VGHALLSFGAIPSSGHPLHDLLDLLGLALIALGTGGIKPCVSAF--------GGD-QFEERQLSLRSRFFSFFYFAINAG 136 (654)
T ss_pred HHHHHHHhccCcccccchHHHHHHHHHHHHHhhccccccCchhh--------hHh-hcCccchhHHHHHHHHHHHHHHHH
Confidence 98888776421 2345677788888999999999998 888 77643 3 56777888888999
Q ss_pred HHHHHHHHhhhhccC----CCCchHHHHHhhHHHHHHHHHHh
Q 047115 205 ILSANLLNYGTQKIK----GSWGWRISLAMAAVPASILTIGS 242 (522)
Q Consensus 205 ~~~~~~~~~~l~~~~----~~~gwr~~f~i~~~~~~~~~~~~ 242 (522)
.++++.+...+.+.. ...+|...|.+.++..++.++..
T Consensus 137 Slis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf 178 (654)
T TIGR00926 137 SLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILALIVF 178 (654)
T ss_pred HHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHHH
Confidence 999988877776332 13479999999877766655544
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=98.15 E-value=3.6e-05 Score=81.03 Aligned_cols=115 Identities=14% Similarity=0.068 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhhhhHHHHHHH
Q 047115 63 LLAAFTSSLYIAGLIAFLFASKVTRAFGRKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCCYSNHCSIG 142 (522)
Q Consensus 63 ~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 142 (522)
..+.+.....++..++.+++++++||+|+|+.+. .+.++.++..+..
T Consensus 265 ~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~---------------------------------~~~~~~~~~~~~~ 311 (444)
T PRK09669 265 LATLFLVTGMIAGLFGALLSERLLGKFDRVRAFK---------------------------------WTIVAFVILSALI 311 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHH---------------------------------HHHHHHHHHHHHH
Confidence 3445566667888889999999999999999998 7766555433322
Q ss_pred hh--hhhhHHHHHHHHHHHhhhhhhhccccccccccccccccccccC-------Ccc-hhHHHHHHHHHHHHHHHHHHHH
Q 047115 143 GA--AFNIYMLILGCVLLGVGIGFTSQSIQRFNQFAYMILLSSNFET-------TRL-SHIDFLLQISICYLILSANLLN 212 (522)
Q Consensus 143 ~~--a~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~i~~~~~~-------~~~-g~~~~~~~~~~~lG~~~~~~~~ 212 (522)
.+ .++.+.+++..++.|++.+...+...++ ++| ..+ +++ |...+.......+|..+|+.++
T Consensus 312 ~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am--------~ad-~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~ 382 (444)
T PRK09669 312 FFIPPSNVWLIFALNILFNFIQNLTTPLQWSM--------FSD-VVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVV 382 (444)
T ss_pred HHhCcchHHHHHHHHHHHHHHHHHHHHHHHHH--------HHh-hhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 22 3567778888899999999998888888 887 664 334 7788888888899999999888
Q ss_pred hhhhccC
Q 047115 213 YGTQKIK 219 (522)
Q Consensus 213 ~~l~~~~ 219 (522)
+.+.+..
T Consensus 383 g~ll~~~ 389 (444)
T PRK09669 383 GWILAWV 389 (444)
T ss_pred HHHHHHc
Confidence 7766543
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.00012 Score=73.51 Aligned_cols=132 Identities=12% Similarity=0.015 Sum_probs=101.3
Q ss_pred HhcHHHHHHHcCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcc
Q 047115 316 SFNAPVLFMTIKVRKSTSLLMSAVVPDGIGTVSTILPMILADKLGRTVLFLLGGIQILVSQVMIRSIMAAQLGDHGGFNI 395 (522)
Q Consensus 316 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (522)
-...|.+.+.++.+..+++ .+......+..+.++..+++.+|+|+|+-+++++.++++++.++....
T Consensus 33 diLip~l~~~f~ls~~~a~-liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa------------ 99 (422)
T COG0738 33 DILIPHLKEVFDLTYFEAS-LIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAA------------ 99 (422)
T ss_pred hhhHHHHHHHhCccHHHHH-HHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhh------------
Confidence 3456777788899999999 999999999999999999999999999999999999999988876443
Q ss_pred hhhHHHHHHHHHHHHhhhccc-cccccccccccCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047115 396 GYAYLILFLICVYKAGFAFSR-GPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLVAQTFLAMLC 460 (522)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~ 460 (522)
.......++..++..+.+.+. ......+++.+.|++..+.-+.+.+.++.+|++++|.+.+.+..
T Consensus 100 ~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lil 165 (422)
T COG0738 100 SSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLIL 165 (422)
T ss_pred hhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 112222333333333333322 23344666788888888888999999999999999999988776
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.13 E-value=6.4e-05 Score=74.30 Aligned_cols=139 Identities=14% Similarity=0.072 Sum_probs=109.1
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHhhhhh-ccccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhhhhH
Q 047115 58 KFDSQLLAAFTSSLYIAGLIAFLFASKVTRAF-GRKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCCYS 136 (522)
Q Consensus 58 ~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~-Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 136 (522)
|+|.++.|++.+...+.....++....+.+|. .+|+..+ ...+++.
T Consensus 239 G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~---------------------------------~~~~~~l 285 (395)
T COG2807 239 GLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVV---------------------------------LALLLML 285 (395)
T ss_pred CCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHH---------------------------------HHHHHHH
Confidence 78999999999999999999999999999975 5566666 6777777
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHhhhhhhhccccccccccccccccccccCCcc-hhHHHHHHHHHHHHHHHHHHHHhhh
Q 047115 137 NHCSIGGAAFNIYMLILGCVLLGVGIGFTSQSIQRFNQFAYMILLSSNFETTRL-SHIDFLLQISICYLILSANLLNYGT 215 (522)
Q Consensus 137 ~~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~-g~~~~~~~~~~~lG~~~~~~~~~~l 215 (522)
++.+.+.+.+....+.- -++.|+|.|..++.+..+ +.+...++++ ++..++.|....+=...||.+.+.+
T Consensus 286 ~G~~G~~~~P~~~~~lw-~~llG~G~G~~F~laL~l--------i~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~l 356 (395)
T COG2807 286 VGLVGLLLAPGQLPILW-ALLLGLGQGGAFPLALTL--------ILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFL 356 (395)
T ss_pred HHHHHHHHhhhhHHHHH-HHHHhCccchHHHHHHHH--------HHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHH
Confidence 77777777665433333 489999999999999888 8872344455 8899988888888888999999999
Q ss_pred hccCCCCchHHHHHhhHHHHHHHHH
Q 047115 216 QKIKGSWGWRISLAMAAVPASILTI 240 (522)
Q Consensus 216 ~~~~~~~gwr~~f~i~~~~~~~~~~ 240 (522)
.+..+ +|+.+...-+...+...+
T Consensus 357 hDa~g--sw~~~~~~l~~~~i~m~i 379 (395)
T COG2807 357 HDATG--SWSAPLVLLALATLLMLI 379 (395)
T ss_pred HHhcC--ChHHHHHHHHHHHHHHHH
Confidence 88876 899877765555444433
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=98.12 E-value=6.6e-06 Score=87.14 Aligned_cols=151 Identities=9% Similarity=-0.054 Sum_probs=116.4
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhhh
Q 047115 55 NYGKFDSQLLAAFTSSLYIAGLIAFLFASKVTRAFGRKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCC 134 (522)
Q Consensus 55 ~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 134 (522)
++.|+++.+.|.+.+...++..++....+++.+|++.|+++. .+.++
T Consensus 281 ~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~---------------------------------~~~~l 327 (468)
T TIGR00788 281 QCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFG---------------------------------VTTLL 327 (468)
T ss_pred ccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHH---------------------------------HHHHH
Confidence 356899999999999999999999999999999999999999 88888
Q ss_pred hHHHHHHHhh----------hhhhHHHHHHHHHHHhhhhhhhccccccccccccccccccccCCcc-hhHHHHHHHHHHH
Q 047115 135 YSNHCSIGGA----------AFNIYMLILGCVLLGVGIGFTSQSIQRFNQFAYMILLSSNFETTRL-SHIDFLLQISICY 203 (522)
Q Consensus 135 ~~~~~~~~~~----------a~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~-g~~~~~~~~~~~l 203 (522)
.+++.+.... .++.+.++..-++.+++.+........+ +.+ ..|++. |...++.+...++
T Consensus 328 ~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l~~~~~g~~~~~~~~~--------~~~-~~p~~~egt~~al~~s~~~l 398 (468)
T TIGR00788 328 YTLSSLFDLILVKRWNLAFGISDEVFVLGDSIIAEVLAQLKFMPFLVL--------LAR-LCPSGCESSVFALLASILHL 398 (468)
T ss_pred HHHHHhCceeeeeccccccCCCCeeeeeehhHHHHHHHHHHHccHHHH--------HHH-hCCCCceehHHHHHHHHHHH
Confidence 8887755421 1334455667788999999888888888 999 999999 9999999999999
Q ss_pred HHHHHHHHHhhhhccCC----CCchHHHHHh-hHHHHHHHHHHhcccCC
Q 047115 204 LILSANLLNYGTQKIKG----SWGWRISLAM-AAVPASILTIGSLFLPE 247 (522)
Q Consensus 204 G~~~~~~~~~~l~~~~~----~~gwr~~f~i-~~~~~~~~~~~~~~lpe 247 (522)
|..+++.+++.+.+..+ +++.++...+ ..++.++.+....++|+
T Consensus 399 g~~v~~~~gg~l~~~~g~~~~~~~~~~~~i~i~~~~~l~~l~~~~llP~ 447 (468)
T TIGR00788 399 GSSVSGFLGVLLMETIGITCDNSNNLWLLILGHSLAPLLPLPLLHLLPR 447 (468)
T ss_pred HHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999988886543 1223333322 33333444444457786
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.10 E-value=1.3e-06 Score=88.38 Aligned_cols=137 Identities=15% Similarity=0.168 Sum_probs=91.7
Q ss_pred hhcchhhccccccHHHHHHhhhhhhhcccCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhh----hhcccccc
Q 047115 20 GYDIGVSGGVTLMEPFLKKCFLEVYKKMKEDPKISNYGKFDSQLLAAFTSSLYIAGLIAFLFASKVTR----AFGRKASI 95 (522)
Q Consensus 20 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d----r~Grk~~l 95 (522)
|...++..-....+|++.+. |++....+.+--...+...+.+|+.|..+| ||||||.+
T Consensus 43 Gvqf~wA~elsy~tPyl~~l------------------Gvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPf 104 (498)
T KOG0637|consen 43 GVQFGWALELSYLTPYLQSL------------------GVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPF 104 (498)
T ss_pred HHHHHHHHHhccccHHHHHc------------------CCCcccccccccccccccceecccccccccccccccccccch
Confidence 33333333333447888877 445566666666677788899999999999 68999887
Q ss_pred ccccccCcccchhhhhhhhhhhhhhhhcccccccchhhhhHHHHHHHhhhhhhHHH-----------------HHHHHHH
Q 047115 96 LPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCCYSNHCSIGGAAFNIYML-----------------ILGCVLL 158 (522)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~l-----------------~~~r~l~ 158 (522)
+ +++..+.+++.++..++.++..+ +++--+.
T Consensus 105 I--------------------------------~~~s~~i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LL 152 (498)
T KOG0637|consen 105 I--------------------------------LAGSLLIAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLL 152 (498)
T ss_pred H--------------------------------HHhhHHHHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHH
Confidence 7 15666777777777777554332 2333333
Q ss_pred HhhhhhhhccccccccccccccccccccCCcc-hh-HHHHHHHHHHHHHHHHHHHHhhh
Q 047115 159 GVGIGFTSQSIQRFNQFAYMILLSSNFETTRL-SH-IDFLLQISICYLILSANLLNYGT 215 (522)
Q Consensus 159 G~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~-g~-~~~~~~~~~~lG~~~~~~~~~~l 215 (522)
=++.-.....+-++ +.| ...+.+ .+ +.+++.....+|..+|..++..+
T Consensus 153 D~A~n~~qgp~ra~--------L~D-l~~~d~~~~~Ans~f~~f~avGnvLGY~~g~y~ 202 (498)
T KOG0637|consen 153 DVANNTLQGPCRAL--------LAD-LARGDAKKTRANSVFSFFMAVGNVLGYALGSYL 202 (498)
T ss_pred HhhhhhhhhhHHHH--------HHH-hccChhhhhccchhHHHHHHhcceeeeeccccc
Confidence 34444444445555 999 665554 44 99999999999999998887633
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.0047 Score=64.89 Aligned_cols=115 Identities=8% Similarity=0.042 Sum_probs=78.0
Q ss_pred chhHHHHHHHHHHHHHHHH-HHHHHHhhhhhccccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhhhhHHH
Q 047115 60 DSQLLAAFTSSLYIAGLIA-FLFASKVTRAFGRKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCCYSNH 138 (522)
Q Consensus 60 ~~~~~~~~~s~~~~~~~i~-~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 138 (522)
..+.+.++.+...+..++. .++.+++++|++|++++- .....+...
T Consensus 41 gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~---------------------------------~~~~~F~~~ 87 (472)
T TIGR00769 41 GAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFY---------------------------------TVISPFLGF 87 (472)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHH---------------------------------HHHHHHHHH
Confidence 4467889988888777777 999999999999999987 555544444
Q ss_pred HHHHhhh----h---------------------------hhHHHHHHHHHHHhhhhhhhc-ccccccccccccccccccc
Q 047115 139 CSIGGAA----F---------------------------NIYMLILGCVLLGVGIGFTSQ-SIQRFNQFAYMILLSSNFE 186 (522)
Q Consensus 139 ~~~~~~a----~---------------------------~~~~l~~~r~l~G~~~g~~~~-~~~~~~~~~~~~~i~~~~~ 186 (522)
.++.++. + +.|...+.-+...+-...... .--.+ ..| .+
T Consensus 88 f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~f--------and-i~ 158 (472)
T TIGR00769 88 FALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGF--------ANQ-IT 158 (472)
T ss_pred HHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH--------HHh-cC
Confidence 4443332 0 112222222222222222221 22334 889 99
Q ss_pred CCcc-hhHHHHHHHHHHHHHHHHHHHHhhhh
Q 047115 187 TTRL-SHIDFLLQISICYLILSANLLNYGTQ 216 (522)
Q Consensus 187 ~~~~-g~~~~~~~~~~~lG~~~~~~~~~~l~ 216 (522)
+.++ .|..++..++.++|.++++.+...+.
T Consensus 159 t~~qakRfy~l~~~ganlg~i~sg~~~~~~~ 189 (472)
T TIGR00769 159 TIDEAKRFYALFGLGANVALIFSGRTIKYFS 189 (472)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999 99999999999999999998877766
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.03 E-value=2.8e-05 Score=80.71 Aligned_cols=186 Identities=11% Similarity=0.052 Sum_probs=116.1
Q ss_pred chhHHHHHHHHHHhhhccchhhHhcHHHHHHH--cCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhhccc-hHHHHHHHH
Q 047115 294 YRPQLVMAILIPFQQVTRVNVISFNAPVLFMT--IKVRKSTSLLMSAVVPDGIGTVSTILPMILADKLGR-TVLFLLGGI 370 (522)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~-~~~~~~~~~ 370 (522)
.+|.+++.....+......+....-.-.|.++ .+-+.+..+ +..+...++..++++..++...|.++ |+.++.+.+
T Consensus 32 ~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG-~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~i 110 (488)
T KOG2325|consen 32 NWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFG-LVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFL 110 (488)
T ss_pred chHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhh-HHHHHHHHHHHhcchhhcccccccCCcccCHHHHHH
Confidence 34444444444444443333332223345555 566667777 88899999999999999999999885 667777888
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCCcchhhHHHHHHHHHHHHhhhccccccccccccccCchhhhhHHHHHHHHHHHHHHHH
Q 047115 371 QILVSQVMIRSIMAAQLGDHGGFNIGYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFL 450 (522)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~ 450 (522)
.+.++.++.....+. +....+..++.-.+ .|.+.+.......+.++....+.|.++++..+....++..+
T Consensus 111 i~~~g~llY~~l~~~--------~~~~~y~mL~~R~l--~Gvg~~n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~il 180 (488)
T KOG2325|consen 111 IAIIGNLLYLALAYV--------PNGVKYLMLVARIL--TGVGVGNFAVLRAYIADASTVEDRPRAFAATSGGFVLGIIL 180 (488)
T ss_pred HHHHHHHHHHHHHhc--------ccchHHHHHHHHHH--cCcCcccHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHH
Confidence 888888888555432 22234444444333 44444444455678788777788888888888777777777
Q ss_pred HHHHHHHHHHhc------------c--chhhHHHHHHHHHHHHHHHhhccCCCC
Q 047115 451 VAQTFLAMLCHF------------K--AGVFFCFGGWVAFMTTFVHFFLPETKY 490 (522)
Q Consensus 451 ~~~~~~~~~~~~------------g--~~~~~~~~~~~~i~~~~~~~~~~~~~~ 490 (522)
||.+...+.... . ..+.++.+...++..+++.++++|..+
T Consensus 181 Gp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~ 234 (488)
T KOG2325|consen 181 GPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYR 234 (488)
T ss_pred hHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeeccc
Confidence 776644333210 1 123445555556666666677776543
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00015 Score=76.82 Aligned_cols=142 Identities=13% Similarity=0.083 Sum_probs=90.0
Q ss_pred chhhHhcHHHHH-HHcCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhh----ccchHHH-HHHHHHHHHHHHHHHHHHHH
Q 047115 312 VNVISFNAPVLF-MTIKVRKSTSLLMSAVVPDGIGTVSTILPMILADK----LGRTVLF-LLGGIQILVSQVMIRSIMAA 385 (522)
Q Consensus 312 ~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr----~g~~~~~-~~~~~~~~~~~~~~~~~~~~ 385 (522)
......|...++ +..|+++...+ .+..+.-+...+.-++.|.++|| +||||.. .++.+...++..++....
T Consensus 25 ~~~~~~~l~~fyt~~~Gl~~~~~g-~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p-- 101 (460)
T PRK11462 25 FDNVMLYMMFFYTDIFGIPAGFVG-TMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTP-- 101 (460)
T ss_pred HHHHHHHHHHHHHHhhCCCHHHHH-HHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCC--
Confidence 344555666655 55699999999 88899999999999999999997 5776554 445555555544433210
Q ss_pred hhCCCCCCcchhhHHHHHHHHHHHHhhhccccccccccccccCc-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 047115 386 QLGDHGGFNIGYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFP-LEIRSAGQSITVAVDLLFTFLVAQTFLAMLCHF 462 (522)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p-~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 462 (522)
+. + .........+..+++..++.....|. .++.+|+.+ +++|++..+.-...+.++..+++.+...+....
T Consensus 102 ---~~-s-~~~~~~y~~~~~~~~~~~~t~~~ipy-~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~ 173 (460)
T PRK11462 102 ---DL-S-MNGKMIYAAITYTLLTLLYTVVNIPY-CALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLI 173 (460)
T ss_pred ---CC-C-cchHHHHHHHHHHHHHHHHHHHhccH-HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 10 0 11112223333334444444433333 255567765 788999999999888888878777766655544
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.0002 Score=75.07 Aligned_cols=136 Identities=17% Similarity=0.132 Sum_probs=99.8
Q ss_pred HHHHHHHHHhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcchhhHHHHHHHHHHHHhhhcccccccc
Q 047115 342 DGIGTVSTILPMILADKLGRTVLFLLGGIQILVSQVMIRSIMAAQLGDHGGFNIGYAYLILFLICVYKAGFAFSRGPLGW 421 (522)
Q Consensus 342 ~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (522)
++..++.+...|.++||+|||..+........+...++.+.. |+..+ ..-..++++. ......
T Consensus 72 ~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~---------------~~~~~-~~~l~g~~~~-~~s~~~ 134 (463)
T KOG2816|consen 72 GLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQG---------------YWFFL-LLGLSGGFSA-IFSVGF 134 (463)
T ss_pred HHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHH---------------HHHhh-hcccccchhh-hhhhhh
Confidence 678888999999999999999999988888877777665531 22222 2222222222 223445
Q ss_pred ccccccCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-hhhHHHHHHHHHHHHHHHhhccCCCCCCHH
Q 047115 422 LVPSEIFPLEIRSAGQSITVAVDLLFTFLVAQTFLAMLCHFKA-GVFFCFGGWVAFMTTFVHFFLPETKYMPIE 494 (522)
Q Consensus 422 ~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 494 (522)
++.++....+.|....|+.+..-..+..++|.+.+...+..+. .++.+-.+...+......+++||+..++.+
T Consensus 135 a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~ 208 (463)
T KOG2816|consen 135 AYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEKER 208 (463)
T ss_pred hheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCcccc
Confidence 7778999999999999999999999999999999999988774 455555555666666777888987665543
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.95 E-value=4.3e-05 Score=77.58 Aligned_cols=113 Identities=14% Similarity=0.052 Sum_probs=74.6
Q ss_pred CCCchhhHHHhHHHHHHHHHHHHhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcchhhHHHHHHHHH
Q 047115 328 VRKSTSLLMSAVVPDGIGTVSTILPMILADKLGRTVLFLLGGIQILVSQVMIRSIMAAQLGDHGGFNIGYAYLILFLICV 407 (522)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (522)
+++...+ .+.....++.++|+++.|++.||+|||++.....+++.++.++.+... ..+.+....+++.+.-.+
T Consensus 81 ~ps~i~~-~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~------~~~~~~~~m~~L~~~R~~ 153 (538)
T KOG0252|consen 81 YPSGVLA-LVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKELIIMIICSALSGLSV------GTTSPLGVMMTLCFFRFL 153 (538)
T ss_pred CCchHHH-HHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHhccCC------CCCCCcchhhHHHHHHHH
Confidence 4455555 788888999999999999999999999999988888888877544421 001111222222222233
Q ss_pred HHHhhhccccccccccccccCchhhhhHHHHHHHHHHHHHH
Q 047115 408 YKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFT 448 (522)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~ 448 (522)
.+.+.+. =-|+..+.++|....+.||+-.+...+.+..+.
T Consensus 154 LGiGIGG-DYPlSAtI~SE~an~~~RGa~iaavFa~Qg~Gi 193 (538)
T KOG0252|consen 154 LGIGIGG-DYPLSATIMSESANKKTRGAFIAAVFAMQGFGI 193 (538)
T ss_pred hhccccC-CCcchHHHhhhhhhhccccceeEEEEEecchhH
Confidence 3333332 236777888999999999988777655554433
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00012 Score=72.38 Aligned_cols=131 Identities=8% Similarity=-0.027 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHHHhhhhhccccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhhhhHHHHHHHhhhhhhHHH
Q 047115 72 YIAGLIAFLFASKVTRAFGRKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCCYSNHCSIGGAAFNIYML 151 (522)
Q Consensus 72 ~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~l 151 (522)
.+...-|.++.+.+.||+|||+.+- .+.+++++..++...+.+-...
T Consensus 391 slaefPGlLIt~~iverlGRKkTMa---------------------------------l~l~~f~iflfll~~c~~rn~~ 437 (528)
T KOG0253|consen 391 SLAEFPGLLITGVIVERLGRKKTMA---------------------------------LSLILFGIFLFLLTTCKTRNAY 437 (528)
T ss_pred HHhhCCchhHHHHHHHHhcchhHHH---------------------------------HHHHHHHHHHHHHHHhcCcchh
Confidence 3567778999999999999999999 8899998888877766443333
Q ss_pred HHHHHHHHhhhhhhhccccccccccccccccccccCCcc-hhHHHHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHh
Q 047115 152 ILGCVLLGVGIGFTSQSIQRFNQFAYMILLSSNFETTRL-SHIDFLLQISICYLILSANLLNYGTQKIKGSWGWRISLAM 230 (522)
Q Consensus 152 ~~~r~l~G~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~-g~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~gwr~~f~i 230 (522)
.+.-+..-+...+.+.+.+.| ..| .+|.+- +...|.-..+.-+|.++.|+++. ..+. .-..+..+
T Consensus 438 tvllf~arafisg~fqvaYvY--------tPE-VyPTavRatgvGtcSsmaRIggI~~p~iA~-~~e~----s~sl~i~v 503 (528)
T KOG0253|consen 438 TVLLFTARAFISGAFQVAYVY--------TPE-VYPTAVRATGVGTCSSMARIGGIFSPVIAM-RAEL----STSLPIFV 503 (528)
T ss_pred HHHHHHHHHHHhchheEEEEe--------cCc-ccchhhhhcchhhhhhHHhhhhhhhhHHHH-Hhcc----ceeehHHH
Confidence 233333333455667788889 999 999888 99999999999999999999982 3222 12244455
Q ss_pred hHHHHHHHHHHhcccCCCh
Q 047115 231 AAVPASILTIGSLFLPETP 249 (522)
Q Consensus 231 ~~~~~~~~~~~~~~lpesp 249 (522)
.+...+...+...++|-.+
T Consensus 504 y~~~~ilagIavcffPiEt 522 (528)
T KOG0253|consen 504 YGALFILAGIAVCFFPIET 522 (528)
T ss_pred HHHHHHHHHHHheeeeecc
Confidence 5555566666667777443
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00031 Score=72.85 Aligned_cols=117 Identities=10% Similarity=0.036 Sum_probs=95.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhhhhHHHH
Q 047115 60 DSQLLAAFTSSLYIAGLIAFLFASKVTRAFGRKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCCYSNHC 139 (522)
Q Consensus 60 ~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 139 (522)
++....+.......+..++.+++.++++|+|+|+++. ++.++..++.
T Consensus 270 ~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~---------------------------------~~~~~~~i~~ 316 (467)
T COG2211 270 PELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFL---------------------------------IGLLLLAVGY 316 (467)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHH---------------------------------HHHHHHHHHH
Confidence 5556667777777888888999999999999999999 9999999999
Q ss_pred HHHhhhh--hhHHHHHHHHHHHhhhhhhhccccccccccccccccc------cccCCcc-hhHHHHHHHHHHHHHHHHHH
Q 047115 140 SIGGAAF--NIYMLILGCVLLGVGIGFTSQSIQRFNQFAYMILLSS------NFETTRL-SHIDFLLQISICYLILSANL 210 (522)
Q Consensus 140 ~~~~~a~--~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~i~~------~~~~~~~-g~~~~~~~~~~~lG~~~~~~ 210 (522)
++..+.+ +.+.+++..++.++|.+...+..-++ ++| |-..+++ |...+......=+|..++..
T Consensus 317 ~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~l~wam--------~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~ 388 (467)
T COG2211 317 LLLYFTPAGSVVLIVVALIIAGVGTGIANPLPWAM--------VADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGF 388 (467)
T ss_pred HHHHhhcCcchHHHHHHHHHHHHHhhccccccHHH--------hcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHH
Confidence 9988876 77888889999999999988887777 765 2233455 88888888888888888886
Q ss_pred HHhhhhc
Q 047115 211 LNYGTQK 217 (522)
Q Consensus 211 ~~~~l~~ 217 (522)
+.++...
T Consensus 389 ~~g~~L~ 395 (467)
T COG2211 389 IPGWILG 395 (467)
T ss_pred HHHHHHH
Confidence 6665553
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00062 Score=67.80 Aligned_cols=156 Identities=15% Similarity=0.020 Sum_probs=91.3
Q ss_pred HHHHHcCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcchhhHH
Q 047115 321 VLFMTIKVRKSTSLLMSAVVPDGIGTVSTILPMILADKLGRTVLFLLGGIQILVSQVMIRSIMAAQLGDHGGFNIGYAYL 400 (522)
Q Consensus 321 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (522)
.++++.|++..+.. .+.....+...+...+.|.++||+|||+..+...++..++.+.... +..+.
T Consensus 59 ~LY~~yg~~~~qIa-~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k~~--------------~~~~~ 123 (354)
T PF05631_consen 59 ALYESYGFSEHQIA-ILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTKHS--------------SNYPV 123 (354)
T ss_pred HHHHHcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhc--------------cccHH
Confidence 44578899999999 8888888889999999999999999999988877777776653222 22222
Q ss_pred HHHHHHHHHHhhhccccccccccccc----cCchhhhhHHHHHHHHH-HHHHHHHHHHHHHHHHHhcc---chhhHHHHH
Q 047115 401 ILFLICVYKAGFAFSRGPLGWLVPSE----IFPLEIRSAGQSITVAV-DLLFTFLVAQTFLAMLCHFK---AGVFFCFGG 472 (522)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~e----~~p~~~r~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~g---~~~~~~~~~ 472 (522)
.++.-.+.+...+.-++.-=.-++.| -+|++..+...+..... +.+.+++...+...+.+..+ ..+|..-..
T Consensus 124 L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~ 203 (354)
T PF05631_consen 124 LLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIV 203 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHH
Confidence 22222222222222111111112233 35666656666655522 33444444444445555544 345555555
Q ss_pred HHHHHHHHHHhhccCCCCC
Q 047115 473 WVAFMTTFVHFFLPETKYM 491 (522)
Q Consensus 473 ~~~i~~~~~~~~~~~~~~~ 491 (522)
++.+..+++....+|..+.
T Consensus 204 ~l~~~~~~I~~~W~ENyg~ 222 (354)
T PF05631_consen 204 LLAVAAVLILKTWPENYGD 222 (354)
T ss_pred HHHHHHHHHHhcccccCCC
Confidence 5556666666666775543
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00017 Score=63.84 Aligned_cols=110 Identities=21% Similarity=0.168 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhhhhHHHHHHHhh
Q 047115 65 AAFTSSLYIAGLIAFLFASKVTRAFGRKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCCYSNHCSIGGA 144 (522)
Q Consensus 65 ~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 144 (522)
-.-.++.+....+++++.+.+.+++|.|+.++ ++.+++.+-.... +
T Consensus 40 ~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~---------------------------------lg~~~y~~y~~~~-~ 85 (156)
T PF05978_consen 40 YYSLAILYGSFAISCLFAPSIVNKLGPKWSMI---------------------------------LGSLGYAIYIASF-F 85 (156)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHH---------------------------------HHHHHHHHHHHHH-H
Confidence 34456667778888889999999999999999 9998888655443 5
Q ss_pred hhhhHHHHHHHHHHHhhhhhhhccccccccccccccccccccCCcc-hhHHHHHHHHHHHHHHHHHHHHhhhhc
Q 047115 145 AFNIYMLILGCVLLGVGIGFTSQSIQRFNQFAYMILLSSNFETTRL-SHIDFLLQISICYLILSANLLNYGTQK 217 (522)
Q Consensus 145 a~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~-g~~~~~~~~~~~lG~~~~~~~~~~l~~ 217 (522)
-++.+.++.+-++.|++.+..+++...+ +.+ ..++++ ++..++.......+.++|.++...+..
T Consensus 86 ~~~~~~l~~~s~l~G~~~a~lW~aqg~y--------lt~-~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~~~ 150 (156)
T PF05978_consen 86 YPNSYTLYPASALLGFGAALLWTAQGTY--------LTS-YSTEETIGRNTGIFWAIFQSSLIFGNLFLFFIFQ 150 (156)
T ss_pred hhhHHHHHHHHHHHhhhhHHhhHhhhHH--------HHH-cCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6788899999999999999999999999 999 888888 999999999999999999888766643
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.005 Score=61.38 Aligned_cols=41 Identities=10% Similarity=-0.117 Sum_probs=33.5
Q ss_pred cccccccCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047115 421 WLVPSEIFPLEIRSAGQSITVAVDLLFTFLVAQTFLAMLCH 461 (522)
Q Consensus 421 ~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 461 (522)
++..+.+.++...|+-+.+.|+..++|+-.-..+...+.|.
T Consensus 391 maf~aqisdp~iggTymTlLNTLsnLGg~wp~tv~l~l~D~ 431 (510)
T KOG3574|consen 391 MAFHAQISDPAIGGTYMTLLNTLSNLGGNWPGTVALWLADG 431 (510)
T ss_pred HHHHhhcCCcccCccHHHHHHHHHHhcCCcHHHHHHHhccc
Confidence 35557889999999999999999999887777777777664
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00069 Score=68.54 Aligned_cols=146 Identities=11% Similarity=0.027 Sum_probs=116.5
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhh-hhccccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhh
Q 047115 55 NYGKFDSQLLAAFTSSLYIAGLIAFLFASKVTR-AFGRKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSC 133 (522)
Q Consensus 55 ~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d-r~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (522)
+-+|++..+...+......|..++....|++.. |.++|+.-. .++.
T Consensus 237 ~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~---------------------------------~G~~ 283 (403)
T PF03209_consen 237 EVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAA---------------------------------LGCL 283 (403)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHH---------------------------------HHHH
Confidence 345889999999999999999999999998887 566666655 6666
Q ss_pred hhHHHHHHHh---hhhhhHHHHHHHHHHHhhhhhhhccccccccccccccccccccCCcc-hhHHHHHHHHHHHHHHHHH
Q 047115 134 CYSNHCSIGG---AAFNIYMLILGCVLLGVGIGFTSQSIQRFNQFAYMILLSSNFETTRL-SHIDFLLQISICYLILSAN 209 (522)
Q Consensus 134 l~~~~~~~~~---~a~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~-g~~~~~~~~~~~lG~~~~~ 209 (522)
...++..+.. ...+.+.+..+-++.|++.|.+.....+. +.+ ...+++ |..+|.+.+...++..++.
T Consensus 284 ~~~~~f~lii~a~~~~~~~~~~~~~~l~G~g~G~f~vgals~--------mM~-lt~~~~aG~~mG~WGaaQA~A~Glg~ 354 (403)
T PF03209_consen 284 LGALAFALIILAGPLGSPWLFRPGVFLLGLGNGLFTVGALSL--------MMD-LTSAGRAGLFMGAWGAAQAIARGLGT 354 (403)
T ss_pred HHHHHHHHHHHHHhcccchHHHHHHHHHHHhhhHHHHHHHHH--------HHh-CCCCcchhHHHHHHHHHHHHHHHHHH
Confidence 6655555443 34678899999999999999999999998 999 999999 9999999999999999999
Q ss_pred HHHhhhhccC-------CCCchHHHHHhhHHHHHHHHHHh
Q 047115 210 LLNYGTQKIK-------GSWGWRISLAMAAVPASILTIGS 242 (522)
Q Consensus 210 ~~~~~l~~~~-------~~~gwr~~f~i~~~~~~~~~~~~ 242 (522)
.+++.+.+.. ...+|-..|.+.++..++.+.+.
T Consensus 355 ~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~ll 394 (403)
T PF03209_consen 355 FLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAALVLL 394 (403)
T ss_pred HHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 9888776521 22467778888777666655443
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0095 Score=62.33 Aligned_cols=91 Identities=11% Similarity=0.035 Sum_probs=51.2
Q ss_pred hhHHHHHHHHHHHhhhhhhhccccccccccccccccccccCCcchhHHHHHHHHHHHHHHHHHHHHhhhhccCCC---Cc
Q 047115 147 NIYMLILGCVLLGVGIGFTSQSIQRFNQFAYMILLSSNFETTRLSHIDFLLQISICYLILSANLLNYGTQKIKGS---WG 223 (522)
Q Consensus 147 ~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~---~g 223 (522)
.++..++.-++.|++.+........+ .+. +|++. +..+..+.+++++++.++........+. ..
T Consensus 105 ~f~~~~~~v~~~g~~~~~~q~s~~gl--------a~~--fp~~~---~~a~~~G~g~aGv~~s~~~ii~~a~~~~~~~~~ 171 (437)
T TIGR00939 105 FFVTTMASVVIINSGMALLQGSLFGL--------AGV--FPSTY---SSAVMSGQGLAGVLTSLAMILVKASGNDSHGLK 171 (437)
T ss_pred HHHHHHHHHHHHHhhhhhhcccchhh--------ccc--CCHHH---HHHHHhcchhHHHHHHHHHHHHHHhcCCccchh
Confidence 45677778888999999888888777 555 55554 3334445555555544443222111111 11
Q ss_pred hH--HHHHhhHHHHHHHHHHhcccCCChH
Q 047115 224 WR--ISLAMAAVPASILTIGSLFLPETPN 250 (522)
Q Consensus 224 wr--~~f~i~~~~~~~~~~~~~~lpesp~ 250 (522)
++ ..|.++.+..++.++....+++.|.
T Consensus 172 ~~a~~YF~~a~~v~l~~i~~~~~l~k~~~ 200 (437)
T TIGR00939 172 KSALGYFGTPCVVQLICIVCYLLLPKLPF 200 (437)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 22 3344555556666666666777764
|
|
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00021 Score=55.93 Aligned_cols=62 Identities=11% Similarity=0.075 Sum_probs=57.1
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhhhhHH
Q 047115 58 KFDSQLLAAFTSSLYIAGLIAFLFASKVTRAFGRKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCCYSN 137 (522)
Q Consensus 58 ~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 137 (522)
++|.++.+++.|..++||.+|++...++.++.++++.+. .+.+...+
T Consensus 23 ~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~---------------------------------~~l~~~~~ 69 (85)
T PF06779_consen 23 GLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLR---------------------------------AGLLLTVL 69 (85)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHH---------------------------------HHHHHHHH
Confidence 789999999999999999999999999999988888888 99999999
Q ss_pred HHHHHhhhhhhHHHH
Q 047115 138 HCSIGGAAFNIYMLI 152 (522)
Q Consensus 138 ~~~~~~~a~~~~~l~ 152 (522)
..+.+++.++.+.+.
T Consensus 70 ~~~~ma~~~~~~~w~ 84 (85)
T PF06779_consen 70 STAAMALTHSFWLWS 84 (85)
T ss_pred HHHHHHHHhchHHHh
Confidence 999999998886553
|
Note that many members are hypothetical proteins. |
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00035 Score=54.03 Aligned_cols=64 Identities=20% Similarity=0.247 Sum_probs=54.6
Q ss_pred HhhhccchhhHhcHHHHHHHcCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhhccchHHHHHHHH
Q 047115 306 FQQVTRVNVISFNAPVLFMTIKVRKSTSLLMSAVVPDGIGTVSTILPMILADKLGRTVLFLLGGI 370 (522)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~ 370 (522)
+..+.....+.-|.|.++++.|++..+.+ .+..+..+..+++.+++|.++||.++++.......
T Consensus 10 f~~f~~~g~~~Pfl~~~~~~~Gl~~~~iG-il~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~ 73 (77)
T PF12832_consen 10 FFYFAALGCLYPFLPLYLKQLGLSPSQIG-ILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSL 73 (77)
T ss_pred HHHHHHHHHHHhhhhHhhhhcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHH
Confidence 44445556677889999999999999999 99999999999999999999999999988765443
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00017 Score=74.74 Aligned_cols=139 Identities=14% Similarity=0.075 Sum_probs=117.0
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhhhhHH
Q 047115 58 KFDSQLLAAFTSSLYIAGLIAFLFASKVTRAFGRKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCCYSN 137 (522)
Q Consensus 58 ~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 137 (522)
+-.+...|.....-..+-.+.-++.+++.+|+|+-+++. .++.+..+
T Consensus 402 ~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~---------------------------------lgLa~~~~ 448 (618)
T KOG3762|consen 402 GGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMY---------------------------------LGLACNVG 448 (618)
T ss_pred CCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceee---------------------------------ehhhHHHH
Confidence 345666777777777888889999999999999999999 99999999
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHhhhhhhhccccccccccccccccccccCCcc-hhHHHHHH-HHHHHHHHHHHHHHhhh
Q 047115 138 HCSIGGAAFNIYMLILGCVLLGVGIGFTSQSIQRFNQFAYMILLSSNFETTRL-SHIDFLLQ-ISICYLILSANLLNYGT 215 (522)
Q Consensus 138 ~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~-g~~~~~~~-~~~~lG~~~~~~~~~~l 215 (522)
=.+..+..+|.|+.+..-+++|+..+..+..+.+| ++. ..||+. ..+.++.+ ...++|--+|.++|+.+
T Consensus 449 Rf~~~S~L~n~W~vLPieilqgit~aliWaa~~sY--------~s~-vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~ 519 (618)
T KOG3762|consen 449 RFLYYSYLQNPWMVLPIEILQGITHALIWAAIISY--------ASH-VAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFV 519 (618)
T ss_pred HHHHHHHhcCchheeeHHHHHHHHHHHHHHHHHHH--------HHh-hCCCcchHHHHHHHHHHhcccCcchhhhhhhhh
Confidence 99999999999999999999999999999999999 999 999998 88888876 44577888888888888
Q ss_pred hccCCCCchHHHHHhhHHHHHHHHHH
Q 047115 216 QKIKGSWGWRISLAMAAVPASILTIG 241 (522)
Q Consensus 216 ~~~~~~~gwr~~f~i~~~~~~~~~~~ 241 (522)
.+.. |=|..|.+.++.+++.++.
T Consensus 520 v~~f---g~~ttf~~~giAcl~~l~~ 542 (618)
T KOG3762|consen 520 VERF---GARTTFRIFGIACLVTLAL 542 (618)
T ss_pred heee---hhHHHHHHHHHHHHHHHHH
Confidence 7554 6777777766655554443
|
|
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.018 Score=59.76 Aligned_cols=39 Identities=13% Similarity=-0.075 Sum_probs=30.4
Q ss_pred ccccccCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047115 422 LVPSEIFPLEIRSAGQSITVAVDLLFTFLVAQTFLAMLC 460 (522)
Q Consensus 422 ~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~ 460 (522)
+.=+.+..|..-|+.+.+.|++.++|+---..+.-.+.|
T Consensus 428 AFharISDP~IGGTYMTLLNTvSNLGGtWP~~~vL~lVD 466 (544)
T PF13000_consen 428 AFHARISDPAIGGTYMTLLNTVSNLGGTWPRTFVLWLVD 466 (544)
T ss_pred HHHhhccCcccchHHHHHHHHHHhcCCCchHHHHHHHhh
Confidence 444677888999999999999999988766656555555
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.021 Score=62.75 Aligned_cols=133 Identities=14% Similarity=-0.003 Sum_probs=86.1
Q ss_pred HHHcCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhh-ccchHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcchhhHHH
Q 047115 323 FMTIKVRKSTSLLMSAVVPDGIGTVSTILPMILADK-LGRTVLFLLGGIQILVSQVMIRSIMAAQLGDHGGFNIGYAYLI 401 (522)
Q Consensus 323 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (522)
.+..|++...+. .+........-+..+++|+++|+ +|+++.+.++.++..++..++..... .. ..........
T Consensus 15 ~~~lg~~~~~A~-~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~---~~--~~~~~~~~~~ 88 (654)
T TIGR00926 15 LNFLGFSESTST-VLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAI---PS--SGHPLHDLLD 88 (654)
T ss_pred HHHcCCcHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccC---cc--cccchHHHHH
Confidence 345788888877 66666666677778888999997 69999999888888888776654211 00 0001111223
Q ss_pred HHHHHHHHHhhhccccccccccccccCchh---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 047115 402 LFLICVYKAGFAFSRGPLGWLVPSEIFPLE---IRSAGQSITVAVDLLFTFLVAQTFLAMLCHF 462 (522)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~---~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 462 (522)
++.+.+..+|.+. .-|...+...|.++++ .|-+...+.....++|+++++.+.+.+.+..
T Consensus 89 l~gLaLia~G~Gg-iKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~ 151 (654)
T TIGR00926 89 LLGLALIALGTGG-IKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDV 151 (654)
T ss_pred HHHHHHHHhhccc-cccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3333333344333 2333345556777643 4677888888899999999999998887543
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0029 Score=48.84 Aligned_cols=39 Identities=13% Similarity=0.218 Sum_probs=37.7
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccc
Q 047115 58 KFDSQLLAAFTSSLYIAGLIAFLFASKVTRAFGRKASIL 96 (522)
Q Consensus 58 ~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~ 96 (522)
|+++.+.|.+.++..+...++.+++|.++||+||++.++
T Consensus 31 Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l 69 (77)
T PF12832_consen 31 GLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVIL 69 (77)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHH
Confidence 889999999999999999999999999999999998877
|
|
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.23 Score=50.64 Aligned_cols=90 Identities=14% Similarity=0.043 Sum_probs=51.1
Q ss_pred hhHHHHHHHHHHHhhhhhhhccccccccccccccccccccCCcc-hhHHHHHHHHHHHHHHHHHHHHhhhhccCC--CCc
Q 047115 147 NIYMLILGCVLLGVGIGFTSQSIQRFNQFAYMILLSSNFETTRL-SHIDFLLQISICYLILSANLLNYGTQKIKG--SWG 223 (522)
Q Consensus 147 ~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~-g~~~~~~~~~~~lG~~~~~~~~~~l~~~~~--~~g 223 (522)
.+...++.-++.|.+.|....+.... .++ .|++. +..+ ++.++++.+..++.-......+ ..+
T Consensus 116 ff~vt~~~vv~~~~a~a~~qgs~~G~--------a~~--~P~~ytqavm----~G~a~aG~l~Sl~~i~tka~~~~~~~s 181 (406)
T KOG1479|consen 116 FFLVTLIIVVLLNLANAVVQGSLYGL--------AGL--FPSEYTQAVM----SGQALAGTLTSLLRILTKAAFSDSRTS 181 (406)
T ss_pred hHHHHHHHHHHHhhhhhhhccchhhh--------hhc--CCHHHHHHHH----hcchhHhHHHHHHHHHHHHhcCCCCce
Confidence 44666667778899998888887777 666 66665 4333 2334443333333222221111 123
Q ss_pred hHHHHHhhHHHHHHHHHHhcccCCChH
Q 047115 224 WRISLAMAAVPASILTIGSLFLPETPN 250 (522)
Q Consensus 224 wr~~f~i~~~~~~~~~~~~~~lpesp~ 250 (522)
=...|.++.+..+++++....+|..|-
T Consensus 182 A~~yF~~s~~~~llC~i~y~~l~~lpf 208 (406)
T KOG1479|consen 182 ALIYFITSTVILLLCFVLYLVLPKLPF 208 (406)
T ss_pred eehhHHHHHHHHHHHHHHHHHhhcchH
Confidence 334566666666666666667777774
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.013 Score=61.49 Aligned_cols=155 Identities=19% Similarity=0.179 Sum_probs=90.0
Q ss_pred HHHHHHcCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhhc-----cchHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCc
Q 047115 320 PVLFMTIKVRKSTSLLMSAVVPDGIGTVSTILPMILADKL-----GRTVLFLLGGIQILVSQVMIRSIMAAQLGDHGGFN 394 (522)
Q Consensus 320 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (522)
|.+.+++|+++.+.. .......+ -....++.|.++|-+ +||+.++++.++..++...+..... .
T Consensus 14 ~~l~~~l~ls~~~~~-~~~~~~~l-Pw~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~---------~ 82 (433)
T PF03092_consen 14 PFLKDDLGLSPAQLQ-RLSSLASL-PWSIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPA---------S 82 (433)
T ss_pred HHHHHHcCCCHHHHH-HHHHHHhC-chHHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhccc---------c
Confidence 344467899998877 44444333 344567889999986 3556666666666555555444321 0
Q ss_pred chhhHHHHHHHHHHHHhhhccccccccccccccC---chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-hhhHHH
Q 047115 395 IGYAYLILFLICVYKAGFAFSRGPLGWLVPSEIF---PLEIRSAGQSITVAVDLLFTFLVAQTFLAMLCHFKA-GVFFCF 470 (522)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~---p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~ 470 (522)
........+++.+...+.... ..+.-....|.. |.+ |+..++....+..+|+.++..+.|.+.+..++ ..+.+.
T Consensus 83 ~~s~~~~~~~l~la~~g~a~~-DV~aDa~vvE~~~~~p~~-~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~ 160 (433)
T PF03092_consen 83 ESSAAIAVVLLFLASFGYAFA-DVAADALVVELARREPES-RGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLIS 160 (433)
T ss_pred cchhhhHHHHHHHHHHHHHHH-HHhhhHHHHHHhhcCCch-hHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHH
Confidence 111122222222222333221 112233444554 444 88889999999999999999999999988774 344444
Q ss_pred HHHHHHHHHHHHhhccC
Q 047115 471 GGWVAFMTTFVHFFLPE 487 (522)
Q Consensus 471 ~~~~~i~~~~~~~~~~~ 487 (522)
+.+..+..+...+..+|
T Consensus 161 ~~~~~l~~~~~~~~~~e 177 (433)
T PF03092_consen 161 AALPLLMLIVALFLLEE 177 (433)
T ss_pred HHHHHHHHHHHHHhhhh
Confidence 44445554555555555
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.00026 Score=75.91 Aligned_cols=151 Identities=9% Similarity=-0.043 Sum_probs=1.2
Q ss_pred HhhhccchhhHhcHHHHHHHcCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHH
Q 047115 306 FQQVTRVNVISFNAPVLFMTIKVRKSTSLLMSAVVPDGIGTVSTILPMILADKLGRTVLFLLGGIQILVSQVMIRSIMAA 385 (522)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (522)
+.+...........+.+-++++++..+.+ ++.+...++.++..++..++.+|-+|-|.+-.+.++++++.+++.+-...
T Consensus 13 ~~q~~~~g~~~~~lttiErRF~l~S~~~G-~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~ 91 (539)
T PF03137_consen 13 LFQMMVSGYVNSSLTTIERRFGLSSSQSG-LISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFL 91 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhh
Confidence 44433333344445566678899999999 99999999999999999999999888888888888888888777653221
Q ss_pred hhCCC-----C-----------------------------CCcchhhHHHHHHHHHHHHhhhcccc---ccccccccccC
Q 047115 386 QLGDH-----G-----------------------------GFNIGYAYLILFLICVYKAGFAFSRG---PLGWLVPSEIF 428 (522)
Q Consensus 386 ~~~~~-----~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~e~~ 428 (522)
. +.+ . .......+....++++.....+++.. ++..+|+-|..
T Consensus 92 ~-~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv 170 (539)
T PF03137_consen 92 S-GPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNV 170 (539)
T ss_dssp -------------------------------------------------------------SSS----------------
T ss_pred c-CCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeecccc
Confidence 1 100 0 00011112222333333333344433 45568888999
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 047115 429 PLEIRSAGQSITVAVDLLFTFLVAQTFLAM 458 (522)
Q Consensus 429 p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~ 458 (522)
+++.-+...|+..+...+|..+|-.+.+..
T Consensus 171 ~~~~splYiGi~~~~~~lGPa~Gf~lg~~~ 200 (539)
T PF03137_consen 171 SKKNSPLYIGILYAMSILGPALGFLLGSFC 200 (539)
T ss_dssp ------------------------------
T ss_pred ccccCccchhhhhHHhhccHHHHHHHHHHH
Confidence 999888888888888777776665555443
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.059 Score=56.73 Aligned_cols=129 Identities=9% Similarity=-0.061 Sum_probs=79.6
Q ss_pred chhhHHHhHHHHHHHHHH-HHhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHhhCC-CC---------CCcch---
Q 047115 331 STSLLMSAVVPDGIGTVS-TILPMILADKLGRTVLFLLGGIQILVSQVMIRSIMAAQLGD-HG---------GFNIG--- 396 (522)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~-~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---------~~~~~--- 396 (522)
+... ++.+...+...+. .++.+++++|++|++++............++....+...+. |. ..+.+
T Consensus 43 e~i~-fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~ 121 (472)
T TIGR00769 43 EIIP-FLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMG 121 (472)
T ss_pred hhHH-HHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHH
Confidence 3444 5555544444444 78899999999999988876666666665555543211000 00 00000
Q ss_pred -----hhHHHHHHHHHHHHhhhccccccccccccccCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047115 397 -----YAYLILFLICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLVAQTFLAMLC 460 (522)
Q Consensus 397 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~ 460 (522)
..|...++............+-+.|.+.+|.+..++..+-.++....++++..+++.+...+.+
T Consensus 122 ~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~ 190 (472)
T TIGR00769 122 FIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFSK 190 (472)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0222222222222222223333678889999999999999999999999999999988877663
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.05 Score=55.77 Aligned_cols=125 Identities=14% Similarity=-0.007 Sum_probs=79.2
Q ss_pred CCchhhHHHhHHHHHHHHHHHHhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcchhhH--HHHHHHH
Q 047115 329 RKSTSLLMSAVVPDGIGTVSTILPMILADKLGRTVLFLLGGIQILVSQVMIRSIMAAQLGDHGGFNIGYAY--LILFLIC 406 (522)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 406 (522)
+.+.+. +...++.+..++..+.+.|+.||+|-|....++.....++..+=..... +.-++..+ .....-.
T Consensus 77 s~~~~~-wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~-------p~v~~~f~~~l~~~Gq~ 148 (480)
T KOG2563|consen 77 SSSAAD-WLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSL-------PFVPPLFRRPLTHTGQS 148 (480)
T ss_pred chHHHH-HHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccC-------ccccccchhhhhHHhHH
Confidence 445555 7888889999999999999999999999999999888888765433210 00112222 1111111
Q ss_pred HHHHhhhccccccccccccccCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 047115 407 VYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLVAQTFLAMLCHF 462 (522)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 462 (522)
+......+. -.++.-...--||+++|+++..+..+.+.+|..++..+-+.+..+.
T Consensus 149 iaa~Aq~Fi-m~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~~~ 203 (480)
T KOG2563|consen 149 IAAAAQPFI-LGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVPSS 203 (480)
T ss_pred HHHHhhhHh-hccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecCCC
Confidence 111111111 1122223344689999999999999998888888777665555443
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.14 Score=52.52 Aligned_cols=159 Identities=11% Similarity=-0.041 Sum_probs=93.7
Q ss_pred HhcHHHHH-HH-cCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC
Q 047115 316 SFNAPVLF-MT-IKVRKSTSLLMSAVVPDGIGTVSTILPMILADKLGRTVLFLLGGIQILVSQVMIRSIMAAQLGDHGGF 393 (522)
Q Consensus 316 ~~~~~~~~-~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (522)
..|...++ .. .|++.++...-+.-...-..++..+....+.|.++.|++++++.+...+...++.+.
T Consensus 23 EPfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~----------- 91 (412)
T PF01770_consen 23 EPFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFG----------- 91 (412)
T ss_pred CccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH-----------
Confidence 34444455 33 688877765222333334445566677889999999999998888777776665553
Q ss_pred cchhhHHHHHHHHHHHHhhhccccccccccccccCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--chhhHHHH
Q 047115 394 NIGYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLVAQTFLAMLCHFK--AGVFFCFG 471 (522)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g--~~~~~~~~ 471 (522)
......-+.-+.++...+. -...++++=...|+++--++.+.+.+...+|.+++..+.-.+....+ +.....+.
T Consensus 92 --~sv~~mq~~q~~yg~~~a~--evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~is 167 (412)
T PF01770_consen 92 --TSVLAMQLMQFFYGLATAA--EVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYIS 167 (412)
T ss_pred --CcHHHHHHHHHHHHHHHHH--HHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 1222333333344333332 12223443456677877888888888888888777777655554332 33333444
Q ss_pred HHHHHHHHHHHhhccCCC
Q 047115 472 GWVAFMTTFVHFFLPETK 489 (522)
Q Consensus 472 ~~~~i~~~~~~~~~~~~~ 489 (522)
......+++..+++|..+
T Consensus 168 l~~~~~a~~~~~fLP~~~ 185 (412)
T PF01770_consen 168 LASVSLALLIALFLPMPK 185 (412)
T ss_pred HHHHHHHHHHHHHcCCCC
Confidence 444555555666777654
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.028 Score=61.43 Aligned_cols=186 Identities=12% Similarity=-0.023 Sum_probs=115.9
Q ss_pred HhhhccchhhHhcHHHHHHHcCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHH
Q 047115 306 FQQVTRVNVISFNAPVLFMTIKVRKSTSLLMSAVVPDGIGTVSTILPMILADKLGRTVLFLLGGIQILVSQVMIRSIMAA 385 (522)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (522)
+.+......+..-...+=++++++..+.+ ++.....++..+......+...|..|-+.+-++.++++++.++..+....
T Consensus 107 ~~q~l~~~y~~s~IttiErRF~i~Ss~sG-~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~alPHf~ 185 (735)
T KOG3626|consen 107 FAQGLYVGYFNSVITTIERRFKISSSQSG-LIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLFALPHFF 185 (735)
T ss_pred HHHHhhhhhhhhhhhhhhhhcCCCCCcce-eEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHHHHhChHHh
Confidence 33333333344444455577899999999 99999999999999999999999999999999999999888877664221
Q ss_pred hh-----------CCCCC--------------------Cc----chhhHHHHHHHHHHHHhhhcccc---cccccccccc
Q 047115 386 QL-----------GDHGG--------------------FN----IGYAYLILFLICVYKAGFAFSRG---PLGWLVPSEI 427 (522)
Q Consensus 386 ~~-----------~~~~~--------------------~~----~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~e~ 427 (522)
.. ....+ .+ ........+++++.....+++.+ ++...|+-|.
T Consensus 186 ~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDn 265 (735)
T KOG3626|consen 186 SGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDN 265 (735)
T ss_pred cCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCcccccc
Confidence 10 00000 00 01111122222222233333333 4556788888
Q ss_pred CchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh------------------cc-chhhHHHHHHHHHHHHHHHhhccCC
Q 047115 428 FPLEIRSAGQSITVAVDLLFTFLVAQTFLAMLCH------------------FK-AGVFFCFGGWVAFMTTFVHFFLPET 488 (522)
Q Consensus 428 ~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~------------------~g-~~~~~~~~~~~~i~~~~~~~~~~~~ 488 (522)
..+++-....|+...+..+|.++|-.+.+.+... .| ||.-+++.+.+.+...+.++++|++
T Consensus 266 vk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~fPk~ 345 (735)
T KOG3626|consen 266 VKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVPLFFFPKE 345 (735)
T ss_pred ccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 8888888888998888888777766666655431 12 4444444444555555566677766
Q ss_pred CCCC
Q 047115 489 KYMP 492 (522)
Q Consensus 489 ~~~~ 492 (522)
.+++
T Consensus 346 lp~~ 349 (735)
T KOG3626|consen 346 LPKS 349 (735)
T ss_pred Cccc
Confidence 5544
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.089 Score=46.61 Aligned_cols=107 Identities=14% Similarity=0.058 Sum_probs=75.0
Q ss_pred HHhHHHHHHHHHHHHhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcchhhHHHHHHHHHHHHhhhcc
Q 047115 336 MSAVVPDGIGTVSTILPMILADKLGRTVLFLLGGIQILVSQVMIRSIMAAQLGDHGGFNIGYAYLILFLICVYKAGFAFS 415 (522)
Q Consensus 336 ~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (522)
....+......++.++.+.+.+++|.|+.++++.+...+-...... ...+..+....+.+.+.+..
T Consensus 41 ~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~~--------------~~~~~l~~~s~l~G~~~a~l 106 (156)
T PF05978_consen 41 YSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASFFY--------------PNSYTLYPASALLGFGAALL 106 (156)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh--------------hhHHHHHHHHHHHhhhhHHh
Confidence 5566777778888899999999999999999887776654443322 22344455555656666655
Q ss_pred ccccccccccccCchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 047115 416 RGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLVAQTFLA 457 (522)
Q Consensus 416 ~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~ 457 (522)
+.... .++.+..+++.|++-.++.-.+...+.++|+.+.-.
T Consensus 107 W~aqg-~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~ 147 (156)
T PF05978_consen 107 WTAQG-TYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFF 147 (156)
T ss_pred hHhhh-HHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 65544 455678888899999998888888777776655433
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.12 Score=55.75 Aligned_cols=139 Identities=14% Similarity=0.018 Sum_probs=101.2
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHhhhhh-ccccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhhhhH
Q 047115 58 KFDSQLLAAFTSSLYIAGLIAFLFASKVTRAF-GRKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCCYS 136 (522)
Q Consensus 58 ~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~-Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 136 (522)
|.+...+.-..+.+.-......+.+++++|.| ||-+++. ++.++..
T Consensus 69 ~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~---------------------------------~~s~i~~ 115 (571)
T KOG1237|consen 69 HASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTIN---------------------------------IGSLISL 115 (571)
T ss_pred ccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHH---------------------------------HHHHHHH
Confidence 45667777788888888888889999999976 8888888 7777776
Q ss_pred HHHHHHhhhhh-------------------------hHHHHHHHHHHHhhhhhhhccccccccccccccccccccC---C
Q 047115 137 NHCSIGGAAFN-------------------------IYMLILGCVLLGVGIGFTSQSIQRFNQFAYMILLSSNFET---T 188 (522)
Q Consensus 137 ~~~~~~~~a~~-------------------------~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~i~~~~~~---~ 188 (522)
+|.++..++.. ...+..+.-+..+|.|+.-+....+ -+| -++ +
T Consensus 116 ~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~f--------Gad-Qfd~~~~ 186 (571)
T KOG1237|consen 116 LGLFGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAF--------GAD-QFDELDP 186 (571)
T ss_pred HHHHHHHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhh--------ccc-ccCccCc
Confidence 66544433211 1356667778888999999999888 777 676 2
Q ss_pred -cc---hhHHHHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHhhHHHHHHHHHH
Q 047115 189 -RL---SHIDFLLQISICYLILSANLLNYGTQKIKGSWGWRISLAMAAVPASILTIG 241 (522)
Q Consensus 189 -~~---g~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~gwr~~f~i~~~~~~~~~~~ 241 (522)
++ ...+.++....++|..++..+-...++. .+|.+-|.+..+..++++++
T Consensus 187 ~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~---~~w~lgf~i~~~~~~lai~i 240 (571)
T KOG1237|consen 187 VEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQDN---VGWKLGFGIPTVLNALAILI 240 (571)
T ss_pred chhhCcccchhHHHHHHHHHHHHHHHHHHhhhhc---ccceeeccHHHHHHHHHHHH
Confidence 22 4677888888999998888876666533 48998888876655554443
|
|
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=96.42 E-value=1.7 Score=46.22 Aligned_cols=36 Identities=8% Similarity=-0.035 Sum_probs=32.2
Q ss_pred ccccccCCcc-hhHHHHHHHHHHHHHHHHHHHHhhhhc
Q 047115 181 LSSNFETTRL-SHIDFLLQISICYLILSANLLNYGTQK 217 (522)
Q Consensus 181 i~~~~~~~~~-g~~~~~~~~~~~lG~~~~~~~~~~l~~ 217 (522)
..| .++.++ .|..+++..+.++|.++++.+...+.+
T Consensus 169 AN~-itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 169 ANE-ITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHh-cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678 888899 999999999999999999988877776
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.27 E-value=1.1 Score=46.64 Aligned_cols=117 Identities=7% Similarity=-0.016 Sum_probs=73.2
Q ss_pred chhHHHHHHHHHHH-HHHHHHHHHHHhhhhhccccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhhhhHHH
Q 047115 60 DSQLLAAFTSSLYI-AGLIAFLFASKVTRAFGRKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCCYSNH 138 (522)
Q Consensus 60 ~~~~~~~~~s~~~~-~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 138 (522)
.++.+..+-+..-+ +..+..++.+++.+++.|.+++- +....+...
T Consensus 59 gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~---------------------------------~~~~~F~~f 105 (509)
T COG3202 59 GAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFY---------------------------------IILGFFLGF 105 (509)
T ss_pred cchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHH---------------------------------HHHHHHHHH
Confidence 55667777777777 77888999999999999999887 444444444
Q ss_pred HHHHhhh---------hh-----------------------hHHHHHHHHHHHhhhhhhhc-cccccccccccccccccc
Q 047115 139 CSIGGAA---------FN-----------------------IYMLILGCVLLGVGIGFTSQ-SIQRFNQFAYMILLSSNF 185 (522)
Q Consensus 139 ~~~~~~a---------~~-----------------------~~~l~~~r~l~G~~~g~~~~-~~~~~~~~~~~~~i~~~~ 185 (522)
.+++++. ++ .|...+.-+..=+=...... .-- ....| .
T Consensus 106 F~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw--------~faNe-i 176 (509)
T COG3202 106 FALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLFYIMAELWGSLVLSLLFW--------QFANE-I 176 (509)
T ss_pred HHHHHHHHhccccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHHHHHHHHHHHHHHHHHHH--------HHHHH-h
Confidence 4444431 01 01111111111111110000 111 12567 7
Q ss_pred cCCcc-hhHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 047115 186 ETTRL-SHIDFLLQISICYLILSANLLNYGTQKI 218 (522)
Q Consensus 186 ~~~~~-g~~~~~~~~~~~lG~~~~~~~~~~l~~~ 218 (522)
++.++ .|..++++.+.+++..+++.+...+.+.
T Consensus 177 tt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k~ 210 (509)
T COG3202 177 TTIEEAKRFYPLFGLGANISLLLSGEVTSWLSKH 210 (509)
T ss_pred hhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 88888 9999999999999999999888887753
|
|
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.09 Score=41.19 Aligned_cols=68 Identities=13% Similarity=-0.041 Sum_probs=59.9
Q ss_pred hhHhcHHHHHHHcCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhhccchHHHHHHHHHHHHHHHHHHHH
Q 047115 314 VISFNAPVLFMTIKVRKSTSLLMSAVVPDGIGTVSTILPMILADKLGRTVLFLLGGIQILVSQVMIRSI 382 (522)
Q Consensus 314 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~ 382 (522)
.++...|...++.+++..+.+ ++.+...++.++|++...++.++.++++.+..+.+...++.+.+.+.
T Consensus 10 ayTplLP~M~~~~~ls~~~ag-~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~ 77 (85)
T PF06779_consen 10 AYTPLLPLMQADGGLSLSQAG-WLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALT 77 (85)
T ss_pred HHHhHhHHHHHhcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667888899999999999 99999999999999999999999888899998888888888877765
|
Note that many members are hypothetical proteins. |
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.031 Score=57.36 Aligned_cols=103 Identities=17% Similarity=0.114 Sum_probs=80.4
Q ss_pred chhhhhHHHHHHHhhhh---h------hHHHHHHHHHHHhhhhhhhccccccccccccccccccccCCc---c-hhHHHH
Q 047115 130 CCSCCYSNHCSIGGAAF---N------IYMLILGCVLLGVGIGFTSQSIQRFNQFAYMILLSSNFETTR---L-SHIDFL 196 (522)
Q Consensus 130 ~~~~l~~~~~~~~~~a~---~------~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~---~-g~~~~~ 196 (522)
.+.+++.+|.++..++. . .+.++++-.+.++|.|+.-+....+ .+| -++++ + .+.+.+
T Consensus 6 ~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~--------~~d-q~~~~~~~~~~~~F~~ 76 (372)
T PF00854_consen 6 LGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPF--------GAD-QYDEDDDSRRDSFFNW 76 (372)
T ss_dssp HHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHH--------HHH-CSSTTTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHH--------HHH-HhcccchhhhhhhHHH
Confidence 77888888888844432 2 2678899999999999999999999 999 77765 2 667778
Q ss_pred HHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHhhHHHHHHHHHHhcc
Q 047115 197 LQISICYLILSANLLNYGTQKIKGSWGWRISLAMAAVPASILTIGSLF 244 (522)
Q Consensus 197 ~~~~~~lG~~~~~~~~~~l~~~~~~~gwr~~f~i~~~~~~~~~~~~~~ 244 (522)
+..+.++|..++..+...+.+. .||.+.|.+.++..++.++.++.
T Consensus 77 fY~~in~G~~~~~~~~~~i~~~---~~~~~~f~i~~~~~~~~~~~f~~ 121 (372)
T PF00854_consen 77 FYWGINIGSLFSPTLVPYIQQN---YGWFLGFGIPAIGMLLALIVFLS 121 (372)
T ss_dssp HHHHHHHHHHHHHHCCCHHHHC---S-HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhhhhHhhcccchhhccc---cchhhhhhHHHHHHHHHHHHHHh
Confidence 8999999999999888888744 48999999988877776665544
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.41 Score=51.41 Aligned_cols=137 Identities=12% Similarity=-0.027 Sum_probs=76.8
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhhhhH-
Q 047115 58 KFDSQLLAAFTSSLYIAGLIAFLFASKVTRAFGRKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCCYS- 136 (522)
Q Consensus 58 ~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~- 136 (522)
|-+....+.+.+++..|.++|+.+++++.++.-|+.... | ++..+.+
T Consensus 46 G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~~~~-------------------------e-------~~i~l~~~ 93 (521)
T PRK03612 46 GDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGFVAV-------------------------E-------LLLALLGG 93 (521)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH-------------------------H-------HHHHHHHH
Confidence 447778899999999999999999988874433332222 0 1111111
Q ss_pred HHHHH----Hhhhhhh-HHHHHHHHHHHhhhhhhhccccccccccccccccccccCCcc-hhHHHHHHHHHHHHHHHHHH
Q 047115 137 NHCSI----GGAAFNI-YMLILGCVLLGVGIGFTSQSIQRFNQFAYMILLSSNFETTRL-SHIDFLLQISICYLILSANL 210 (522)
Q Consensus 137 ~~~~~----~~~a~~~-~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~-g~~~~~~~~~~~lG~~~~~~ 210 (522)
++..+ ..+.... ..+....++.|+..|+..|....+ ..+ .. .++ ++..|-......+|.++|.+
T Consensus 94 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~G~~~Pl~~~~--------~~~-~~-~~~~g~~~g~ly~~ntlGa~~G~l 163 (521)
T PRK03612 94 LSALILYAAFAFQGLSRLLLYVLVLLIGLLIGMEIPLLMRI--------LQR-IR-DQHLGHNVATVLAADYLGALVGGL 163 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHh-cc-ccchhhhhhhhHhHHhHHHHHHHH
Confidence 11111 1111111 223345567788888888887776 555 32 334 66667777777777777777
Q ss_pred HHhhhhc-cCCCCchHHHHHhhHHHHHHH
Q 047115 211 LNYGTQK-IKGSWGWRISLAMAAVPASIL 238 (522)
Q Consensus 211 ~~~~l~~-~~~~~gwr~~f~i~~~~~~~~ 238 (522)
+.+++.- ..+ ..+..+.++.+..+++
T Consensus 164 ~~~~vLlp~lG--~~~t~~~~a~l~~~~a 190 (521)
T PRK03612 164 AFPFLLLPRLG--LIRTAALTGSLNLLAA 190 (521)
T ss_pred HHHHHHHHhcc--hHHHHHHHHHHHHHHH
Confidence 7554442 222 2444444444433333
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=95.10 E-value=1.1 Score=46.76 Aligned_cols=148 Identities=10% Similarity=0.014 Sum_probs=74.4
Q ss_pred HHhHHHHHHHHHHHHhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC--cchhhHHHHHHHHHHHHhhh
Q 047115 336 MSAVVPDGIGTVSTILPMILADKLGRTVLFLLGGIQILVSQVMIRSIMAAQLGDHGGF--NIGYAYLILFLICVYKAGFA 413 (522)
Q Consensus 336 ~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 413 (522)
.....-.+..++.+...|...||..|.+....+...--++..+-.............. +............+......
T Consensus 42 iygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~ 121 (432)
T PF06963_consen 42 IYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVAASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAIER 121 (432)
T ss_pred HHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHHH
Confidence 3445556667777788889999999998877665443222222111111111111000 11111111111111111111
Q ss_pred ccc--cccc----ccc-ccccCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-hhhHHHHHHHHHHHHHHHhh
Q 047115 414 FSR--GPLG----WLV-PSEIFPLEIRSAGQSITVAVDLLFTFLVAQTFLAMLCHFKA-GVFFCFGGWVAFMTTFVHFF 484 (522)
Q Consensus 414 ~~~--~~~~----~~~-~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~i~~~~~~~~ 484 (522)
.+. ..+. |.. +++ -+++.....++...-+..+...++|.+.|.+.+..+. ....+++++.++...+=+++
T Consensus 122 Las~~~~iavERDWVvvi~~-~~~~~La~~NA~mRRIDL~ckllaPl~vG~l~t~~s~~~~~~~i~~~N~~S~~vEy~~ 199 (432)
T PF06963_consen 122 LASIANTIAVERDWVVVIAG-GDPGALARMNATMRRIDLFCKLLAPLFVGLLMTFASPVIAAIFIAGWNLASVFVEYFL 199 (432)
T ss_pred HHHhhhhheeccchhhhhcC-CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 110 1111 211 111 2455667777777778889999999999999987763 33444555555554443433
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=94.79 E-value=0.62 Score=44.66 Aligned_cols=133 Identities=18% Similarity=0.098 Sum_probs=79.2
Q ss_pred HhcHHHHHHHcCCCC--chhhHHHhHHHHHHHHHHHHhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC
Q 047115 316 SFNAPVLFMTIKVRK--STSLLMSAVVPDGIGTVSTILPMILADKLGRTVLFLLGGIQILVSQVMIRSIMAAQLGDHGGF 393 (522)
Q Consensus 316 ~~~~~~~~~~~g~~~--~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (522)
....+.+..+.+.+. ...+ .......+...++.+..|.+.||.|||+.+..+......+.+......
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~---------- 90 (338)
T COG0477 22 SPALPLLLSTLSLSSGRLLYG-LLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAP---------- 90 (338)
T ss_pred HHHHHHHHHHcCCCchhHHHH-HHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCc----------
Confidence 344555555555554 3455 777788888888889999999999999777766655333322222211
Q ss_pred cchhhHHHHHHHHHHHHhhhccccccccccccccCch-hhhhHHHHHHHH-HHHHHHHHHHHHHHHHHHh
Q 047115 394 NIGYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFPL-EIRSAGQSITVA-VDLLFTFLVAQTFLAMLCH 461 (522)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~-~~r~~~~g~~~~-~~~~~~~~~~~~~~~~~~~ 461 (522)
....+.........+.+.+ ...+....+..|..|. +.|+...+.... ...++..+++.+.+.+...
T Consensus 91 -~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (338)
T COG0477 91 -NVGLALLLILRLLQGLGGG-GLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGA 158 (338)
T ss_pred -cchHHHHHHHHHHHHhhhH-HHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1112222222222222222 2344555666788887 678888888777 4666777777665555544
|
|
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.22 E-value=3.9 Score=41.95 Aligned_cols=185 Identities=15% Similarity=0.169 Sum_probs=81.2
Q ss_pred HHHHHHHH-HhhhccchhhHhcHHHHHHHcCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhhccchHHHHHHHHHHHHHH
Q 047115 298 LVMAILIP-FQQVTRVNVISFNAPVLFMTIKVRKSTSLLMSAVVPDGIGTVSTILPMILADKLGRTVLFLLGGIQILVSQ 376 (522)
Q Consensus 298 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~ 376 (522)
..+.+++. .......+.+.+-.+++.++...+.. +. .......+...+..++...+.-|...|....++..+.....
T Consensus 19 v~~i~~llGiG~LlpWN~fiTa~~y~~~~~~~~~~-~~-~F~~~~~~~a~i~~ll~~~~n~~~~~~~~~~~~~~l~~~~i 96 (406)
T KOG1479|consen 19 VYLIFLLLGIGTLLPWNMFITASDYYYYRFPGYHN-SK-NFTSSYTLAAQIPLLLFNLLNAFLNTRLRTRVGYLLSLIAI 96 (406)
T ss_pred HHHHHHHHhcccccchHhhhccHHHHHhhcCCCch-HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333 66667777777777777766543333 32 34555555555555555555444433322222222222222
Q ss_pred HHHHHHHHHhhCCCCCCcchhhHHHHHHHHHHHHhhhccccccccccccccCchhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 047115 377 VMIRSIMAAQLGDHGGFNIGYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLVAQTFL 456 (522)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~ 456 (522)
+........ .-+.+.......+..+..+.....+.+...+.+ +-. +..+|++.-...++-.+.++.+.+ +...+..
T Consensus 97 l~i~~l~~~-~v~~~~~~~~ff~vt~~~vv~~~~a~a~~qgs~-~G~-a~~~P~~ytqavm~G~a~aG~l~S-l~~i~tk 172 (406)
T KOG1479|consen 97 LFIVTLDLA-LVKTDTWTNGFFLVTLIIVVLLNLANAVVQGSL-YGL-AGLFPSEYTQAVMSGQALAGTLTS-LLRILTK 172 (406)
T ss_pred HHHHHHHHH-hhccCCccchhHHHHHHHHHHHhhhhhhhccch-hhh-hhcCCHHHHHHHHhcchhHhHHHH-HHHHHHH
Confidence 111111110 101111111222233333333334333333333 233 356787775544433333333322 2233333
Q ss_pred HHHHhc--cchhhHHHHHHHHHHHHHHHhhccCC
Q 047115 457 AMLCHF--KAGVFFCFGGWVAFMTTFVHFFLPET 488 (522)
Q Consensus 457 ~~~~~~--g~~~~~~~~~~~~i~~~~~~~~~~~~ 488 (522)
...+.. +...|+..+.+..+.+++.+..+|+.
T Consensus 173 a~~~~~~~sA~~yF~~s~~~~llC~i~y~~l~~l 206 (406)
T KOG1479|consen 173 AAFSDSRTSALIYFITSTVILLLCFVLYLVLPKL 206 (406)
T ss_pred HhcCCCCceeehhHHHHHHHHHHHHHHHHHhhcc
Confidence 333322 24456677777777777777765543
|
|
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.01 E-value=0.07 Score=54.80 Aligned_cols=141 Identities=15% Similarity=0.096 Sum_probs=85.1
Q ss_pred cchhhHhcHHHHHHHcCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhh----ccchHHHHH-HHHHHHHHHHHHHHHHHH
Q 047115 311 RVNVISFNAPVLFMTIKVRKSTSLLMSAVVPDGIGTVSTILPMILADK----LGRTVLFLL-GGIQILVSQVMIRSIMAA 385 (522)
Q Consensus 311 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr----~g~~~~~~~-~~~~~~~~~~~~~~~~~~ 385 (522)
+...-..|.|.+.+..|.+....+ +......+.+++.+++.|..+|| +||||..+. +.....++..++.....+
T Consensus 47 ~wA~elsy~tPyl~~lGvphk~~S-~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDi 125 (498)
T KOG0637|consen 47 GWALELSYLTPYLQSLGVPHKWSS-IIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADI 125 (498)
T ss_pred HHHHHhccccHHHHHcCCCccccc-ccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhh
Confidence 344556788888999999999888 77788888999999999999997 677776554 445556666655554332
Q ss_pred hh--CCCCCCcchhhHHH--HHHHHHHHHhhhccccccccccccccCchhhhhH-HHHHHHHHHHHHHHHHHH
Q 047115 386 QL--GDHGGFNIGYAYLI--LFLICVYKAGFAFSRGPLGWLVPSEIFPLEIRSA-GQSITVAVDLLFTFLVAQ 453 (522)
Q Consensus 386 ~~--~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~-~~g~~~~~~~~~~~~~~~ 453 (522)
.. .+....+....... ++.+.+.-+......+|. -++..|+..++.+.+ +.+....+..+|+.++=.
T Consensus 126 g~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~-ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~ 197 (498)
T KOG0637|consen 126 GLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPC-RALLADLARGDAKKTRANSVFSFFMAVGNVLGYA 197 (498)
T ss_pred hHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhH-HHHHHHhccChhhhhccchhHHHHHHhcceeeee
Confidence 21 22211111111111 111222222222223333 356678776666666 888877777777765433
|
|
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.67 E-value=2 Score=45.03 Aligned_cols=106 Identities=15% Similarity=0.112 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh---hhccccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhhhhHHHHH
Q 047115 64 LAAFTSSLYIAGLIAFLFASKVTR---AFGRKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCCYSNHCS 140 (522)
Q Consensus 64 ~~~~~s~~~~~~~i~~~~~g~l~d---r~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 140 (522)
.+.-.-...++..++..+.+.+++ |+||++.+. ++.++..++++
T Consensus 281 ~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~---------------------------------~~~~~~~~~~~ 327 (461)
T KOG3098|consen 281 IAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVL---------------------------------IGIIIHLIGFL 327 (461)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchh---------------------------------HHHHHHHHHHH
Confidence 344444445666666677777775 578999988 88888888777
Q ss_pred HHhhh------------------hhhHHHHHHHHHHHhhhhhhhccccccccccccccccccccCCcchhHHHHHHHHHH
Q 047115 141 IGGAA------------------FNIYMLILGCVLLGVGIGFTSQSIQRFNQFAYMILLSSNFETTRLSHIDFLLQISIC 202 (522)
Q Consensus 141 ~~~~a------------------~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~ 202 (522)
+.... +++...++.-+++|++.+........+ +.+ ..|+++..+.++...-..
T Consensus 328 li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~D~~~~t~~~~i--------i~~-~~~~~~~~~fsi~kfyq~ 398 (461)
T KOG3098|consen 328 LIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFGDACFNTQRYVI--------IAL-LYPDDRAQAFSLFKFYQS 398 (461)
T ss_pred HHhccccccCCCCCCcccccccccchhHHHHHHHHHhhHHHHHHHHHHHH--------HHH-HhcCchHHHHHHHHHHHH
Confidence 76553 245577778899999999999999998 999 786655777777766666
Q ss_pred HHHHHHHHH
Q 047115 203 YLILSANLL 211 (522)
Q Consensus 203 lG~~~~~~~ 211 (522)
++..++...
T Consensus 399 ~~s~v~~f~ 407 (461)
T KOG3098|consen 399 VASCVAFFF 407 (461)
T ss_pred HHHHHHhhh
Confidence 666555443
|
|
| >PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS) | Back alignment and domain information |
|---|
Probab=93.61 E-value=0.92 Score=43.41 Aligned_cols=52 Identities=13% Similarity=-0.002 Sum_probs=30.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhc--cCCCCchHHHHHhhHHHHHHHHHHh
Q 047115 191 SHIDFLLQISICYLILSANLLNYGTQK--IKGSWGWRISLAMAAVPASILTIGS 242 (522)
Q Consensus 191 g~~~~~~~~~~~lG~~~~~~~~~~l~~--~~~~~gwr~~f~i~~~~~~~~~~~~ 242 (522)
+..+.+...+.++|.++..+.-..-.+ ......|++.+.+.+++.++-+++.
T Consensus 5 ~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly 58 (267)
T PF07672_consen 5 SILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILY 58 (267)
T ss_pred ceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666677778887776554222101 0112369999988776665544443
|
|
| >PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs | Back alignment and domain information |
|---|
Probab=93.38 E-value=0.02 Score=57.18 Aligned_cols=116 Identities=7% Similarity=-0.071 Sum_probs=2.2
Q ss_pred HHhHHHHHHHHHHHHhHHHHhhhc-cchHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcchhhHHHHHHHHHHHHhhhc
Q 047115 336 MSAVVPDGIGTVSTILPMILADKL-GRTVLFLLGGIQILVSQVMIRSIMAAQLGDHGGFNIGYAYLILFLICVYKAGFAF 414 (522)
Q Consensus 336 ~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (522)
..+..+.++.++|+.+.++..-+. .+|.+. +..+.-.+..-++.........+..+..-.+.+..++...+++...+.
T Consensus 186 ~~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~-~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGy 264 (309)
T PF01733_consen 186 VLFLLFNLGDFIGRFLASWPRWPGPSPRWLW-ILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGY 264 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhcchhcceeEecccccccHH-HHHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccch
Confidence 356678999999999888742221 233333 222221111111111100000000000112233334444444443332
Q ss_pred cccccccccccccCchhhhhHHHHHHHHHHHHHHHHHHH
Q 047115 415 SRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLVAQ 453 (522)
Q Consensus 415 ~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~ 453 (522)
.+.....+..+..++++|..+-.+....-.+|-.+|..
T Consensus 265 -l~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~ 302 (309)
T PF01733_consen 265 -LSTLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSV 302 (309)
T ss_dssp ---HHHH--------------------------------
T ss_pred -hhhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666678888888877766666555555555443
|
Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A. |
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=92.63 E-value=12 Score=39.72 Aligned_cols=116 Identities=16% Similarity=0.041 Sum_probs=72.5
Q ss_pred HHHHHHHhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC-----------cchh--------hHHHHHH
Q 047115 344 IGTVSTILPMILADKLGRTVLFLLGGIQILVSQVMIRSIMAAQLGDHGGF-----------NIGY--------AYLILFL 404 (522)
Q Consensus 344 ~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~--------~~~~~~~ 404 (522)
+.++...+..++++|+++.+++.+..........++++..+ +..+.-++ ++.. .|...++
T Consensus 71 ~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vly-P~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slf 149 (491)
T PF03219_consen 71 VAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLY-PNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLF 149 (491)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHh-hchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHH
Confidence 44555677889999999999887766666555555555432 11110000 0111 1111111
Q ss_pred HHHHHHhhhccccccccccccccCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047115 405 ICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLVAQTFLAMLC 460 (522)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~ 460 (522)
.+..-...+...+-+.|.+++|.++.++..+-.++.....+++..+++.+...+.+
T Consensus 150 Yv~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 150 YVMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111111222233568889999999999999999999999999999988887776
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=91.19 E-value=6.6 Score=42.20 Aligned_cols=49 Identities=12% Similarity=0.057 Sum_probs=31.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH-hcc-chhhHHHHHHHHHHHHHH
Q 047115 433 RSAGQSITVAVDLLFTFLVAQTFLAMLC-HFK-AGVFFCFGGWVAFMTTFV 481 (522)
Q Consensus 433 r~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~g-~~~~~~~~~~~~i~~~~~ 481 (522)
-+...|-....+.+|+.+|+.+.+.+.- ..| ....++++.+.++.+++.
T Consensus 143 ~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~a~~~ 193 (521)
T PRK03612 143 LGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNLLAALVF 193 (521)
T ss_pred hhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 3556777888888999999888887654 556 334445555444444433
|
|
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=89.70 E-value=15 Score=38.62 Aligned_cols=130 Identities=12% Similarity=-0.071 Sum_probs=82.1
Q ss_pred CchhhHHHhHHHHH-HHHHHHHhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC------------c-c
Q 047115 330 KSTSLLMSAVVPDG-IGTVSTILPMILADKLGRTVLFLLGGIQILVSQVMIRSIMAAQLGDHGGF------------N-I 395 (522)
Q Consensus 330 ~~~~~~~~~~~~~~-~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~-~ 395 (522)
++... ++-...-+ +.++..++..++.+++.+.+++...........++++...+- ..+.-++ + .
T Consensus 60 ae~I~-FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P-~~~~~hp~~~~~~~~~~~~p~~ 137 (509)
T COG3202 60 AESIS-FLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYP-YKDILHPDPEFSRDLFADLPMF 137 (509)
T ss_pred chhhH-HHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhc-cccccCCCHHHHHHHHhhCCcc
Confidence 44444 55555444 667778888999999999998887766666666666655431 1111000 0 0
Q ss_pred --h-----hhHHHHHHHHHHHHhhhccccccccccccccCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047115 396 --G-----YAYLILFLICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLVAQTFLAMLCH 461 (522)
Q Consensus 396 --~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 461 (522)
+ ..|...+...+.-..-+...+-+.|..++|....++..+-.++.+...+++..+++.+...+..+
T Consensus 138 l~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k~ 210 (509)
T COG3202 138 LKWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSKH 210 (509)
T ss_pred ceeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 0 11333333332222222333445677889999999999999999999999999988888777663
|
|
| >KOG3097 consensus Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.63 E-value=12 Score=37.18 Aligned_cols=97 Identities=15% Similarity=0.208 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHHhhhhhccccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhhhhHHHHHHHhhhhhhHHH
Q 047115 72 YIAGLIAFLFASKVTRAFGRKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCCYSNHCSIGGAAFNIYML 151 (522)
Q Consensus 72 ~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~l 151 (522)
++.....+.+.+.+.+++|.|+++. ++...+...-. .-+-+.+..+
T Consensus 68 y~~l~~s~m~~~~~Ir~~g~K~tm~---------------------------------lav~~Y~lyiA-~Nl~pr~~tl 113 (390)
T KOG3097|consen 68 YLSLIDSSMFMPLLIRFLGTKWTMV---------------------------------LAVFPYALYIA-ANLEPRYETL 113 (390)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHHH---------------------------------HHHHHHHHHHH-hhcchhHHhh
Confidence 3444555666669999999999999 77777665332 2244778899
Q ss_pred HHHHHHHHhhhhhhhccccccccccccccccccccCCc---------------c-hhHHHHHHHHHHHHHHHHHHH
Q 047115 152 ILGCVLLGVGIGFTSQSIQRFNQFAYMILLSSNFETTR---------------L-SHIDFLLQISICYLILSANLL 211 (522)
Q Consensus 152 ~~~r~l~G~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~---------------~-g~~~~~~~~~~~lG~~~~~~~ 211 (522)
+-.-...|++.+..+.+--+| +++ ...+. . |....+++.....|.+++..+
T Consensus 114 VPa~~~~G~aa~p~W~SkgtY--------lT~-~g~~ya~~~~~q~~~~~~~~ffg~Ffii~~~~qv~gn~issli 180 (390)
T KOG3097|consen 114 VPAGLVLGMAAGPIWASKGTY--------LTP-MGQNYANQRGEQAGDGMKVRFFGEFFIIFQCAQVWGNLISSLI 180 (390)
T ss_pred ccHHHhhccccccccccCcce--------ecH-HHHHHHHhhhhhccCceeeeehhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999888888 766 43322 1 345555666666665555544
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=89.32 E-value=2 Score=43.89 Aligned_cols=118 Identities=10% Similarity=-0.076 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcchhhHHHHHHHHHHHHhhhccccccccccccccCchh---hhhHHHHH
Q 047115 363 VLFLLGGIQILVSQVMIRSIMAAQLGDHGGFNIGYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFPLE---IRSAGQSI 439 (522)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~---~r~~~~g~ 439 (522)
+.+.++.+...++.+++....... .. ..........+.+.+...|.+. .-|....+.+|.++++ .|.+....
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~---~~-~~~~~~~~~~~gL~lia~G~G~-~K~ni~~~~~dq~~~~~~~~~~~~F~~ 76 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPP---SL-PSGIQLGLFYIGLALIAVGTGG-IKPNISPFGADQYDEDDDSRRDSFFNW 76 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSS---SC-------CHHHHHHHHHHHHHHC-CHHHHHHHHHHCSSTTTTTHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcc---hh-hhhHHHHHHHHHHHHHHhcccc-ccccHHHHHHHHhcccchhhhhhhHHH
Confidence 456677778888877765543211 00 0001112233333333444443 3344445557777654 56777888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHhhc
Q 047115 440 TVAVDLLFTFLVAQTFLAMLCHFKAGVFFCFGGWVAFMTTFVHFFL 485 (522)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~ 485 (522)
.....++|+.++....+++.++.+|...+..+.++.+.+++.+..-
T Consensus 77 fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~ 122 (372)
T PF00854_consen 77 FYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSG 122 (372)
T ss_dssp HHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhC
Confidence 8889999999999999999999998777777676666666655543
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=88.24 E-value=3.6 Score=42.39 Aligned_cols=129 Identities=9% Similarity=0.028 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcchhhHHHHHHHHHHHHhhhccccc
Q 047115 339 VVPDGIGTVSTILPMILADKLGRTVLFLLGGIQILVSQVMIRSIMAAQLGDHGGFNIGYAYLILFLICVYKAGFAFSRGP 418 (522)
Q Consensus 339 ~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (522)
..-.+-.++..++..+..+|+..+.-......+..+++++..+. ...+.-++.+++.... .+.+-
T Consensus 66 ladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~-------------~~v~~~l~Gv~las~s--sg~GE 130 (402)
T PF02487_consen 66 LADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFS-------------PSVWVRLLGVVLASLS--SGLGE 130 (402)
T ss_pred HHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeec-------------cchhHHHHHHHHHhhh--hhhhH
Confidence 33445566667778888998875554555555666666655442 2223334444443333 33343
Q ss_pred cccccccccCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---hhhHHHHHHHHHHHHHHHhhccC
Q 047115 419 LGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLVAQTFLAMLCHFKA---GVFFCFGGWVAFMTTFVHFFLPE 487 (522)
Q Consensus 419 ~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~---~~~~~~~~~~~i~~~~~~~~~~~ 487 (522)
+...-.+..+|+.. .+........++.+++.....+.+ .+. ....+...+.++..+..++.+|.
T Consensus 131 ~tfL~lt~~y~~~~----l~~wssGTG~aGl~Ga~~y~~lT~-~g~s~~~tll~~~~lp~~~~~~~f~~L~~ 197 (402)
T PF02487_consen 131 VTFLSLTHFYGKSS----LSAWSSGTGGAGLVGALYYLGLTT-LGLSPRTTLLIMLVLPAIFLLSYFFLLPS 197 (402)
T ss_pred HHHHHHHHhcCccc----cccccCCcChhhHHHHHHHHHHHH-hCcCHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 44333345666432 233333334455566666555554 442 23334333333333333444443
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=88.11 E-value=7.2 Score=41.07 Aligned_cols=67 Identities=16% Similarity=0.202 Sum_probs=33.9
Q ss_pred HHHHHHhhhccchhhHhcHHHHHHH--cCCCCchhhH--HHhHHHHHHHHHHHHhHHHHhhhccchHHHHH
Q 047115 301 AILIPFQQVTRVNVISFNAPVLFMT--IKVRKSTSLL--MSAVVPDGIGTVSTILPMILADKLGRTVLFLL 367 (522)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~~~~~--~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~ 367 (522)
.+++++.+........--.|.++++ .+.+-.+.+. +..-++++=-+-+.++=...++|+||||..++
T Consensus 5 L~~LY~lQGiP~GL~~gsiPflL~~~~~~~sy~q~~~fSla~~PfSlKlLWaPiVDs~y~~~~GRRKSWii 75 (544)
T PF13000_consen 5 LVLLYFLQGIPLGLAFGSIPFLLQSMAKKVSYSQQAIFSLASYPFSLKLLWAPIVDSVYSKRIGRRKSWII 75 (544)
T ss_pred HHHHHHHcCcccccccccchhhhccccCCCChhHheeeeeeechhHHHHhhhhhhhhhcccccCCcchhhh
Confidence 3445555555544333466887776 4555444430 12222333222223333355668999987654
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=87.81 E-value=7.5 Score=40.77 Aligned_cols=23 Identities=22% Similarity=0.241 Sum_probs=13.8
Q ss_pred chhhHHHHHHHHHHHHHHHhhcc
Q 047115 464 AGVFFCFGGWVAFMTTFVHFFLP 486 (522)
Q Consensus 464 ~~~~~~~~~~~~i~~~~~~~~~~ 486 (522)
...++..+.+..+.+++.+..++
T Consensus 174 a~~YF~~a~~v~l~~i~~~~~l~ 196 (437)
T TIGR00939 174 ALGYFGTPCVVQLICIVCYLLLP 196 (437)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHh
Confidence 34466666666666666665554
|
|
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=86.68 E-value=41 Score=36.59 Aligned_cols=141 Identities=12% Similarity=0.043 Sum_probs=80.7
Q ss_pred HHcCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhh-ccchHHHHHHHHHHHHHHHHHHHHHHHhhCC--------CC-CC
Q 047115 324 MTIKVRKSTSLLMSAVVPDGIGTVSTILPMILADK-LGRTVLFLLGGIQILVSQVMIRSIMAAQLGD--------HG-GF 393 (522)
Q Consensus 324 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~-~~ 393 (522)
...+.+...+. -.............+++++++|- +||-+.+.++.++..++..++.......... .+ .-
T Consensus 66 ~~~~~~~~~aa-~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c 144 (571)
T KOG1237|consen 66 LELHASGGGAA-NNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFKPGGNVC 144 (571)
T ss_pred HHhccchHHHH-HHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCCCCCcc
Confidence 55566666555 55666667777778899999997 5888888888888888876666555433211 10 00
Q ss_pred cc-hhhHHHHHHHHHHHHhhh-ccccccccccccccCc----hhhhh--HHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Q 047115 394 NI-GYAYLILFLICVYKAGFA-FSRGPLGWLVPSEIFP----LEIRS--AGQSITVAVDLLFTFLVAQTFLAMLCHFKAG 465 (522)
Q Consensus 394 ~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~e~~p----~~~r~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~ 465 (522)
+. ......++...++....+ .+.-|.....-+|.++ .+.+. .-+.......+.+..++..+..+..+..+|.
T Consensus 145 ~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~~w~ 224 (571)
T KOG1237|consen 145 ESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQDNVGWK 224 (571)
T ss_pred cCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhhhcccce
Confidence 11 111122222222222222 2233444456567776 22222 4455566666777777777777777776654
|
|
| >KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.87 E-value=0.77 Score=44.94 Aligned_cols=103 Identities=11% Similarity=-0.057 Sum_probs=59.8
Q ss_pred chhhhhHHHHHHHhhhhhhHHHHHHHHHHHhhhhhhhccccccccccccccccccccCCcchhHHHHHHHHHHHHHHHHH
Q 047115 130 CCSCCYSNHCSIGGAAFNIYMLILGCVLLGVGIGFTSQSIQRFNQFAYMILLSSNFETTRLSHIDFLLQISICYLILSAN 209 (522)
Q Consensus 130 ~~~~l~~~~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~lG~~~~~ 209 (522)
...++.+.+.++.+++++.++-+++-++..++.|.-...-..+ -+. +++. ..+.+..+.+..+++|.
T Consensus 97 ~~v~~sa~s~~lVafs~s~~~sL~GV~~aSissGlGEiTFL~l--------ss~--Y~~~---~i~~WSSGTGgAGliGa 163 (409)
T KOG3880|consen 97 LVVLLSALSFFLVAFSNSVPMSLLGVVFASISSGLGEITFLAL--------SSR--YPSI---VIAGWSSGTGGAGLIGA 163 (409)
T ss_pred HHHHHHhcceEEEEeccchhHHHhhhhhhhhcCCcceeehhhh--------hcc--CCCc---eeccccCCCCcchhhhh
Confidence 4467778888889999999999999999988888766555554 333 3332 22233334444445555
Q ss_pred HHHhhhhccCCCCchHHHHHhh-HHHHHHHHHHhcccC
Q 047115 210 LLNYGTQKIKGSWGWRISLAMA-AVPASILTIGSLFLP 246 (522)
Q Consensus 210 ~~~~~l~~~~~~~gwr~~f~i~-~~~~~~~~~~~~~lp 246 (522)
.--..+.+.. ..+-|...++. .++++.+...++.++
T Consensus 164 ~SYa~lT~~~-~~spk~Tlli~l~lP~lfa~~yf~lL~ 200 (409)
T KOG3880|consen 164 SSYAFLTSWA-NLSPKSTLLIMLFLPALFAFAYFFLLK 200 (409)
T ss_pred hHHHHHhhhc-CCChhhHHHHHHHHHHHHHHHHHheeC
Confidence 4434444322 23456666555 444444444444443
|
|
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=84.40 E-value=1.6 Score=42.01 Aligned_cols=52 Identities=21% Similarity=0.109 Sum_probs=36.8
Q ss_pred HHHHcCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhhccchHHHHHHHHHHHH
Q 047115 322 LFMTIKVRKSTSLLMSAVVPDGIGTVSTILPMILADKLGRTVLFLLGGIQILV 374 (522)
Q Consensus 322 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~ 374 (522)
+.++.|+...+.+ .+........++...+.|-++||.|||+..+.-.+...+
T Consensus 63 LYstYgFgkG~Ig-qLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiL 114 (454)
T KOG4332|consen 63 LYSTYGFGKGDIG-QLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYIL 114 (454)
T ss_pred eehhcCccCCccc-eeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHH
Confidence 3466788888887 666655566677777888999999999976544433333
|
|
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=83.85 E-value=12 Score=38.20 Aligned_cols=71 Identities=14% Similarity=0.207 Sum_probs=43.1
Q ss_pred cchhHHHHHHHHHHhhhccchhhHhcHHHHHHHcCCCCchhhHHHhHHHHHHHHHHHHhHHHHhh-----hccchHHHHH
Q 047115 293 IYRPQLVMAILIPFQQVTRVNVISFNAPVLFMTIKVRKSTSLLMSAVVPDGIGTVSTILPMILAD-----KLGRTVLFLL 367 (522)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-----r~g~~~~~~~ 367 (522)
..++.+....+++..+........ -.|.+++.-|.|-.+.+ ...... --.---+++..+.| |+||||..+.
T Consensus 28 ~d~~~illLl~LYllQGiP~GL~~-~iP~lL~ak~vSyt~~a-~fS~ay--~P~sLKllWaPiVDs~y~k~~GrrksWvv 103 (510)
T KOG3574|consen 28 GDRSSILLLLFLYLLQGIPLGLIG-AIPLLLQAKGVSYTSQA-IFSFAY--WPFSLKLLWAPIVDSVYSKRFGRRKSWVV 103 (510)
T ss_pred hhhhhHHHHHHHHHHcCCchhHhh-hhHHHhcCCCcchhhhh-hhhhhh--hHHHHHHHHHhhhHHHHHHhhccccceee
Confidence 345666777777777776666555 78988887777765544 211111 11122356667777 9999986543
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 522 | ||||
| 4gby_A | 491 | The Structure Of The Mfs (Major Facilitator Superfa | 3e-21 |
| >pdb|4GBY|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily) Proton:xylose Symporter Xyle Bound To D-Xylose Length = 491 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
No hit with e-value below 0.005
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 522 | |||
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 100.0 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 100.0 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.98 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.95 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.95 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.91 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.9 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.28 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.18 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.1 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.08 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.04 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 98.87 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 98.86 |
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-46 Score=396.32 Aligned_cols=438 Identities=23% Similarity=0.377 Sum_probs=351.8
Q ss_pred HHHHHHHHHHHHHHhhhhhcchhhccccccHHHHHHhhhhhhhcccCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHH
Q 047115 3 IFIVLSCIVAATSGLIFGYDIGVSGGVTLMEPFLKKCFLEVYKKMKEDPKISNYGKFDSQLLAAFTSSLYIAGLIAFLFA 82 (522)
Q Consensus 3 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~~~~~s~~~~~~~i~~~~~ 82 (522)
++.+.+++++++|++++|||.++++++. |.+.+++..+.. .+.+.++++.|++.+++.+|..+|++++
T Consensus 8 ~y~~~i~~~a~lg~~~~Gyd~~~i~~~~--~~~~~~~~~~~~----------~~~~~~~~~~g~~~s~~~~G~~iG~~~~ 75 (491)
T 4gc0_A 8 SYIFSITLVATLGGLLFGYDTAVISGTV--ESLNTVFVAPQN----------LSESAANSLLGFCVASALIGCIIGGALG 75 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHGGGGTH--HHHHHHHTGGGC----------CCHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhcCCCC----------CCcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678889999999999999999999875 677666642210 0113466788999999999999999999
Q ss_pred HHhhhhhccccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhhhhHHHHHHHh------------------h
Q 047115 83 SKVTRAFGRKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCCYSNHCSIGG------------------A 144 (522)
Q Consensus 83 g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------------------~ 144 (522)
|+++||+|||++++ ++.+++.+++++++ +
T Consensus 76 G~laDr~GRk~~l~---------------------------------~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~ 122 (491)
T 4gc0_A 76 GYCSNRFGRRDSLK---------------------------------IAAVLFFISGVGSAWPELGFTSINPDNTVPVYL 122 (491)
T ss_dssp HHHHHHTCHHHHHH---------------------------------HHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGG
T ss_pred HHHHHHhcCHHHHH---------------------------------HHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHH
Confidence 99999999999999 99999999999988 4
Q ss_pred hhhhHHHHHHHHHHHhhhhhhhccccccccccccccccccccCCcc-hhHHHHHHHHHHHHHHHHHHHHhhhhccCC---
Q 047115 145 AFNIYMLILGCVLLGVGIGFTSQSIQRFNQFAYMILLSSNFETTRL-SHIDFLLQISICYLILSANLLNYGTQKIKG--- 220 (522)
Q Consensus 145 a~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~-g~~~~~~~~~~~lG~~~~~~~~~~l~~~~~--- 220 (522)
++|+++++++|+++|+|.|...+....+ ++| +.|+++ ++..++.+.+..+|.++++.++.......+
T Consensus 123 a~~~~~l~~~R~l~G~g~G~~~~~~~~~--------i~E-~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 193 (491)
T 4gc0_A 123 AGYVPEFVIYRIIGGIGVGLASMLSPMY--------IAE-LAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASW 193 (491)
T ss_dssp GGCHHHHHHHHHHHHHHHHHHHHHHHHH--------HHT-TSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTT
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH--------HHh-hCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhcccccccc
Confidence 7899999999999999999999999999 999 999998 999999999999999999999887764332
Q ss_pred --CCchHHHHHhhHHHHHHHHHHhcccCCChHHHHHhCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHH------hhccc
Q 047115 221 --SWGWRISLAMAAVPASILTIGSLFLPETPNSIIQRNKDHQKAEEILQIVRNTTDVKAELDDIIRASS------KIIHR 292 (522)
Q Consensus 221 --~~gwr~~f~i~~~~~~~~~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~l~~~ 292 (522)
.++||+.+.+..++.++.++..+++||||+|+..+++ .+++++.+++.+++++.+++..+.++... .....
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~-~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (491)
T 4gc0_A 194 LNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGK-QEQAEGILRKIMGNTLATQAVQEIKHSLDHGRKTGGRLLM 272 (491)
T ss_dssp TTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred ccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCc-hhHHHHhHHHhcCCchhHHHHHHHHHHHHhhhhhhhHHHH
Confidence 3579999999999999988999999999999999999 99988888777655433333222221111 11111
Q ss_pred cchhHHHHHHHHH-HhhhccchhhHhcHHHHHHHcCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhhccchHHHHHHHHH
Q 047115 293 IYRPQLVMAILIP-FQQVTRVNVISFNAPVLFMTIKVRKSTSLLMSAVVPDGIGTVSTILPMILADKLGRTVLFLLGGIQ 371 (522)
Q Consensus 293 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~ 371 (522)
...++........ +.+..+.+.+..|.|.+.+..+.+..... ......++..+++.++.+++.||+|||+.+..+...
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~ 351 (491)
T 4gc0_A 273 FGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIAL-LQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALG 351 (491)
T ss_dssp SCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHH
T ss_pred hcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchh-hHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHH
Confidence 2234445555555 77788888889999999998888877777 777888899999999999999999999999988888
Q ss_pred HHHHHHHHHHHHHHhhCCCCCCcchhhHHHHHHHHHHHHhhhccccccccccccccCchhhhhHHHHHHHHHHHHHHHHH
Q 047115 372 ILVSQVMIRSIMAAQLGDHGGFNIGYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLV 451 (522)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~ 451 (522)
+.++.+.+..... .....+..++..+++..++..+..++.+.+.+|++|++.|+++.|+.+++++++++++
T Consensus 352 ~~~~~~~l~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~ 422 (491)
T 4gc0_A 352 MAIGMFSLGTAFY---------TQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFV 422 (491)
T ss_dssp HHHHHHHHHHHHH---------TTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh---------cccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHH
Confidence 8887776665542 1223344555566666777778888889999999999999999999999999999999
Q ss_pred HHHHHHHHHh------cc-chhhHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHhcccc
Q 047115 452 AQTFLAMLCH------FK-AGVFFCFGGWVAFMTTFVHFFLPETKYMPIEFMDKVWREHWF 505 (522)
Q Consensus 452 ~~~~~~~~~~------~g-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (522)
+.+++.+.+. .+ ...++++++++++..+++++++||||+|++||+|+.++++.+
T Consensus 423 ~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~~~f~~~~~ 483 (491)
T 4gc0_A 423 SWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEALWEPETK 483 (491)
T ss_dssp HTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHGGGTC----
T ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHHHHhCCCCc
Confidence 9888766442 22 346778888888888899999999999999999988766543
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-33 Score=291.83 Aligned_cols=393 Identities=12% Similarity=-0.032 Sum_probs=275.8
Q ss_pred HHHHHHHHHHHHHHhhhhhcchhhccccccHHHHHHhhhhhhhcccCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHH
Q 047115 3 IFIVLSCIVAATSGLIFGYDIGVSGGVTLMEPFLKKCFLEVYKKMKEDPKISNYGKFDSQLLAAFTSSLYIAGLIAFLFA 82 (522)
Q Consensus 3 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~~~~~s~~~~~~~i~~~~~ 82 (522)
++.+.......++.+..+++....++.. |. +.+++ ++..+.+++.+++.++..++++++
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~------------------~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~ 82 (451)
T 1pw4_A 24 RLRWQIFLGIFFGYAAYYLVRKNFALAM--PY------------------LVEQG-FSRGDLGFALSGISIAYGFSKFIM 82 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSHHHHH--HH------------------TTSST-TCSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH------------------HHHHh-ccHhHHHHHHHHHHHHHHHHHHhH
Confidence 3456667777788888888877776553 22 34455 688899999999999999999999
Q ss_pred HHhhhhhccccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhhhhHHHHHHHhh----hhhhHHHHHHHHHH
Q 047115 83 SKVTRAFGRKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCCYSNHCSIGGA----AFNIYMLILGCVLL 158 (522)
Q Consensus 83 g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----a~~~~~l~~~r~l~ 158 (522)
|+++||+|||++++ .+.++.+++.+++++ ++|++.++++|+++
T Consensus 83 G~l~dr~g~r~~l~---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~ 129 (451)
T 1pw4_A 83 GSVSDRSNPRVFLP---------------------------------AGLILAAAVMLFMGFVPWATSSIAVMFVLLFLC 129 (451)
T ss_dssp HHHHHHSCHHHHHH---------------------------------HHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHH
T ss_pred HHHHHhcCchHHHH---------------------------------HHHHHHHHHHHHHHhhhhccccHHHHHHHHHHH
Confidence 99999999999999 999999999999999 99999999999999
Q ss_pred HhhhhhhhccccccccccccccccccccCCcc-hhHHHHHHHHHHHHHHHHHHHHhhhhccCCCCc-hHHHHHhhHHHHH
Q 047115 159 GVGIGFTSQSIQRFNQFAYMILLSSNFETTRL-SHIDFLLQISICYLILSANLLNYGTQKIKGSWG-WRISLAMAAVPAS 236 (522)
Q Consensus 159 G~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~-g~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~g-wr~~f~i~~~~~~ 236 (522)
|++.+...+...++ +.| ++|+++ ++++++.+.+..+|.++++.+++.+.+.. | ||+.|++.++..+
T Consensus 130 G~~~~~~~~~~~~~--------i~~-~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~---g~w~~~f~~~~~~~~ 197 (451)
T 1pw4_A 130 GWFQGMGWPPCGRT--------MVH-WWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWF---NDWHAALYMPAFCAI 197 (451)
T ss_dssp HHHHHHTHHHHHHH--------HHT-TCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHT---CCSTTCTHHHHHHHH
T ss_pred HHHhhhccchHHHH--------HHH-HCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHH
Confidence 99999999999999 999 888888 99999999999999999999998766443 6 9999998877665
Q ss_pred HH-HHHhcccCCChHHHHHhCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHHhhccccchhHHHHHHHHHHhhhccchhh
Q 047115 237 IL-TIGSLFLPETPNSIIQRNKDHQKAEEILQIVRNTTDVKAELDDIIRASSKIIHRIYRPQLVMAILIPFQQVTRVNVI 315 (522)
Q Consensus 237 ~~-~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (522)
+. ++..+++||+|+....+++ .+..++...+...+++.+...++. ..++.+++ +..+......+........+
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 271 (451)
T 1pw4_A 198 LVALFAFAMMRDTPQSCGLPPI-EEYKNDYPDDYNEKAEQELTAKQI--FMQYVLPN---KLLWYIAIANVFVYLLRYGI 271 (451)
T ss_dssp HHHHHHHHHCCCSSTTTCCCSC-TTTCCC-------------CCTHH--HHHHTSSC---HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccCCHhhcCCCCh-hhhcccccccchhhhhcccccccc--hHHHHHcC---HHHHHHHHHHHHHHHHHHHH
Confidence 54 4455678888754211111 000000000000000000000000 00122222 23333333334444455667
Q ss_pred HhcHHHHHHH-cCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhhc--cchHHHHHHHHHHH-HHHHHHHHHHHHhhCCCC
Q 047115 316 SFNAPVLFMT-IKVRKSTSLLMSAVVPDGIGTVSTILPMILADKL--GRTVLFLLGGIQIL-VSQVMIRSIMAAQLGDHG 391 (522)
Q Consensus 316 ~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~--g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 391 (522)
..+.|.++++ .|++..+.+ .......++.+++.++.+++.||+ +||+.+..+..+.. ++.+++...
T Consensus 272 ~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 341 (451)
T 1pw4_A 272 LDWSPTYLKEVKHFALDKSS-WAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMN--------- 341 (451)
T ss_dssp HHHHHHHBTTBSCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSC---------
T ss_pred HHHHHHHHHHhcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHh---------
Confidence 7888988876 799998888 889999999999999999999999 99988776665544 333332211
Q ss_pred CCcchhhHHHHHHHHHHHHhhhccccccccccccccCchhhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHhccchh-hHH
Q 047115 392 GFNIGYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLL-FTFLVAQTFLAMLCHFKAGV-FFC 469 (522)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~g~~~-~~~ 469 (522)
+....+......++.+.+.+. ..+....+..|.+|++.|+++.|+.+.+..+ +..++|.+.+.+.++.++.. +.+
T Consensus 342 --~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~ 418 (451)
T 1pw4_A 342 --PAGNPTVDMICMIVIGFLIYG-PVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMV 418 (451)
T ss_dssp --CTTCHHHHHHHHHHHHHHHTH-HHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHH
T ss_pred --cccCHHHHHHHHHHHHHHHhc-hHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 111233333333343333332 2334456778999999999999999999999 99999999999999988654 444
Q ss_pred HHHHHHHHHHH
Q 047115 470 FGGWVAFMTTF 480 (522)
Q Consensus 470 ~~~~~~i~~~~ 480 (522)
.+++.++..++
T Consensus 419 ~~~~~~~~~~~ 429 (451)
T 1pw4_A 419 MIGGSILAVIL 429 (451)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44444443333
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=9.6e-31 Score=271.79 Aligned_cols=371 Identities=9% Similarity=0.018 Sum_probs=269.7
Q ss_pred HHHHHHHHHHHHhhhhhcchhhccccccHHHHHHhhhhhhhcccCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 047115 5 IVLSCIVAATSGLIFGYDIGVSGGVTLMEPFLKKCFLEVYKKMKEDPKISNYGKFDSQLLAAFTSSLYIAGLIAFLFASK 84 (522)
Q Consensus 5 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~ 84 (522)
.+...+..++..+..+++....++.. |.+.+++ |++..+.+++.+.+.++..++++++|+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~------------------g~s~~~~g~~~~~~~~~~~i~~~~~G~ 83 (438)
T 3o7q_A 24 YIIPFALLCSLFFLWAVANNLNDILL--PQFQQAF------------------TLTNFQAGLIQSAFYFGYFIIPIPAGI 83 (438)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHS------------------CCCSHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHH--HHHHHHc------------------CCCHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 34556666777788898888877664 6666666 789999999999999999999999999
Q ss_pred hhhhhccccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhhhhHHHHHHH---hhhhhhHHHHHHHHHHHhh
Q 047115 85 VTRAFGRKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCCYSNHCSIG---GAAFNIYMLILGCVLLGVG 161 (522)
Q Consensus 85 l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~a~~~~~l~~~r~l~G~~ 161 (522)
++||+|||++++ .+.++.+++.+++ +++++++.++++|+++|++
T Consensus 84 l~dr~g~r~~l~---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~ 130 (438)
T 3o7q_A 84 LMKKLSYKAGII---------------------------------TGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAG 130 (438)
T ss_dssp HHHHSCHHHHHH---------------------------------HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhcchHHHH---------------------------------HHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhh
Confidence 999999999999 9999999999999 8889999999999999999
Q ss_pred hhhhhccccccccccccccccccccCCcc-hhHHHHHHHHHHHHHHHHHHHHhhhh-ccCCCC-----------------
Q 047115 162 IGFTSQSIQRFNQFAYMILLSSNFETTRL-SHIDFLLQISICYLILSANLLNYGTQ-KIKGSW----------------- 222 (522)
Q Consensus 162 ~g~~~~~~~~~~~~~~~~~i~~~~~~~~~-g~~~~~~~~~~~lG~~~~~~~~~~l~-~~~~~~----------------- 222 (522)
.|...+....+ ++| ++|+++ ++++++.+.+..+|.++++.+++.+. +..+..
T Consensus 131 ~~~~~~~~~~~--------~~~-~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (438)
T 3o7q_A 131 LGCLETAANPF--------VTV-LGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYK 201 (438)
T ss_dssp HHHHHHHHHHH--------HHH-SSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHH
T ss_pred HHHhhhhHHHH--------HHH-HcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhh
Confidence 99999999999 999 888888 99999999999999999999998887 443210
Q ss_pred -----chHHHHHhhHHHHHHHHHH--hcccCCChHHHHHhCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHHhhccccch
Q 047115 223 -----GWRISLAMAAVPASILTIG--SLFLPETPNSIIQRNKDHQKAEEILQIVRNTTDVKAELDDIIRASSKIIHRIYR 295 (522)
Q Consensus 223 -----gwr~~f~i~~~~~~~~~~~--~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 295 (522)
+||+.|++.++..++..+. ....||+++. +++ +++ +++.+.. .+++++++..
T Consensus 202 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~---~~~-~~~----------~~~~~~~-------~~~~~~~~~~ 260 (438)
T 3o7q_A 202 HSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSD---NHS-DAK----------QGSFSAS-------LSRLARIRHW 260 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTT---CCC-CSS----------TTSHHHH-------HHHHTTCSHH
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCccccc---ccc-ccc----------ccchhhh-------HHHHHhChHH
Confidence 1999997765554443333 2335666531 111 100 0011111 1144444333
Q ss_pred hHHHHHHHHHHhhhccchhhHhcHHHH-HHHc-CCCCchhhHHHhHHHHHHHHHHHHhHHHHhhhccchHHHHHHHHHHH
Q 047115 296 PQLVMAILIPFQQVTRVNVISFNAPVL-FMTI-KVRKSTSLLMSAVVPDGIGTVSTILPMILADKLGRTVLFLLGGIQIL 373 (522)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~ 373 (522)
+...... +...........+.|.+ +++. |++..+.+ .......++.+++.++.++++||++||+.+..+..+..
T Consensus 261 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~ 336 (438)
T 3o7q_A 261 RWAVLAQ---FCYVGAQTACWSYLIRYAVEEIPGMTAGFAA-NYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAM 336 (438)
T ss_dssp HHHHHHH---HHHHHHHHHHHHHHHHHHHHHSTTCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHhhhccCCcchhHHH-HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 3333222 33333344566788888 7665 99999998 88888999999999999999999999999988877776
Q ss_pred HHHHHHHHHHHHhhCCCCCCcchhhHHHHHHHHHHHHhhhccccccccccccccCchhhhhHHHHHHHHHHHHHHHHHHH
Q 047115 374 VSQVMIRSIMAAQLGDHGGFNIGYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLVAQ 453 (522)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~ 453 (522)
++.+++... +. .+. .....+.+.+.+.. .+..+.+..|.+|++ ++.+.++.. .+.++..++|.
T Consensus 337 ~~~~~~~~~------------~~-~~~-~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~ 399 (438)
T 3o7q_A 337 ALCLISAFA------------GG-HVG-LIALTLCSAFMSIQ-YPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTP 399 (438)
T ss_dssp HHHHHHHHC------------CH-HHH-HHHHHHHHHHHTTH-HHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHH
T ss_pred HHHHHHHHc------------CC-cHH-HHHHHHHHHHHHHH-HHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHH
Confidence 665544432 11 122 22223333444333 345566667889876 888888877 67799999999
Q ss_pred HHHHHHHhcc-chhhHHHHHHHHHHHH
Q 047115 454 TFLAMLCHFK-AGVFFCFGGWVAFMTT 479 (522)
Q Consensus 454 ~~~~~~~~~g-~~~~~~~~~~~~i~~~ 479 (522)
+.+.+.++.+ +...+.+.+++.+...
T Consensus 400 ~~g~l~~~~g~~~~~~~~~~~~~~~~~ 426 (438)
T 3o7q_A 400 VMGFVSDAAGNIPTAELIPALCFAVIF 426 (438)
T ss_dssp HHHHHHHHHTSSGGGGHHHHHHHHHHH
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 9999999988 6554444444443333
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.8e-27 Score=249.78 Aligned_cols=384 Identities=11% Similarity=0.012 Sum_probs=246.3
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhh-hccccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhh
Q 047115 55 NYGKFDSQLLAAFTSSLYIAGLIAFLFASKVTRA-FGRKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSC 133 (522)
Q Consensus 55 ~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr-~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (522)
+|+|++..+.+++.+.+.++..++++++|+++|| +|||+++. .+.+
T Consensus 47 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~---------------------------------~~~~ 93 (491)
T 4aps_A 47 GDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVF---------------------------------WGGV 93 (491)
T ss_dssp TSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHH---------------------------------HHHH
T ss_pred hhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHH---------------------------------HHHH
Confidence 4558999999999999999999999999999999 89999999 9999
Q ss_pred hhHHHHHHHhhhhhhHHHHHHHHHHHhhhhhhhccccccccccccccccccccCCcc---hhHHHHHHHHHHHHHHHHHH
Q 047115 134 CYSNHCSIGGAAFNIYMLILGCVLLGVGIGFTSQSIQRFNQFAYMILLSSNFETTRL---SHIDFLLQISICYLILSANL 210 (522)
Q Consensus 134 l~~~~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~---g~~~~~~~~~~~lG~~~~~~ 210 (522)
+.+++.+++++++|++.++++|+++|++.|...+...++ ++| ++|+++ +...++++.+..+|..+++.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~--------~~~-~~~~~~~~r~~~~~~~~~~~~~g~~~~~~ 164 (491)
T 4aps_A 94 LIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTL--------VGT-LYDEHDRRRDAGFSIFVFGINLGAFIAPL 164 (491)
T ss_dssp HHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHH--------HHH-HSSSCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHH--------HHH-HcCcccccceeeehHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999 999 777654 56777789999999999999
Q ss_pred HHhhhhccCCCCchHHHHHhhHHHHHHHHHHhccc-CC----ChHHHHHhCCCHHHHHHHHHH----------------H
Q 047115 211 LNYGTQKIKGSWGWRISLAMAAVPASILTIGSLFL-PE----TPNSIIQRNKDHQKAEEILQI----------------V 269 (522)
Q Consensus 211 ~~~~l~~~~~~~gwr~~f~i~~~~~~~~~~~~~~l-pe----sp~~~~~~~~~~~~~~~~~~~----------------~ 269 (522)
+++.+.+.. |||+.|++.++..++..+..++. |+ ..+...++.+ .++.++..+. .
T Consensus 165 ~~~~l~~~~---g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~~~~~~ 240 (491)
T 4aps_A 165 IVGAAQEAA---GYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLA-PEEVKPLLVKVSLAVAGFIAIIVVMNL 240 (491)
T ss_dssp HHHHHHHHS---CHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCS-HHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHhhh---hHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccc-cchhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999887543 79999998766655544433322 11 1000000111 2222222221 0
Q ss_pred cCCcchHHHHHH--H-------------HHHHH-hhccccchhHHHHHHHHHHhhhccchhhHhcHHHHHHH-cCCCCch
Q 047115 270 RNTTDVKAELDD--I-------------IRASS-KIIHRIYRPQLVMAILIPFQQVTRVNVISFNAPVLFMT-IKVRKST 332 (522)
Q Consensus 270 ~~~~~~~~~~~~--~-------------~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~ 332 (522)
.+..+.++.... . .+... ....++............+...........+.|.+.++ .+.+...
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (491)
T 4aps_A 241 VGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFP 320 (491)
T ss_dssp HSSCCTTHHHHHHHHHHHHHHHHHHHHHC------------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSC
T ss_pred ccCcccccchhhhhHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccC
Confidence 111111100000 0 00000 00000111111111111122222233344556666655 4666566
Q ss_pred hhHHHhHHHHHHHHHHHHhHHHHhhhccchHHHH-----HHHHHHHHHHHHHHHHHHHhhCCCCCCcchhhHHHHHHHHH
Q 047115 333 SLLMSAVVPDGIGTVSTILPMILADKLGRTVLFL-----LGGIQILVSQVMIRSIMAAQLGDHGGFNIGYAYLILFLICV 407 (522)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (522)
.+ .......+..+++.++.+++.||++||+... .+..+..++.+++....... .+ ..+...+......++
T Consensus 321 ~~-~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~l 395 (491)
T 4aps_A 321 VS-WFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALY-GT---SGKVSPLWLVGSWAL 395 (491)
T ss_dssp SG-GGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHC-CC---CTTCCTHHHHHHHHH
T ss_pred HH-HHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhc-CC---CCCccHHHHHHHHHH
Confidence 66 7788888999999999999999999986544 55555555555444432110 00 011123333444444
Q ss_pred HHHhhhccccccccccccccCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHhhccC
Q 047115 408 YKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLVAQTFLAMLCHFKAGVFFCFGGWVAFMTTFVHFFLPE 487 (522)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~ 487 (522)
.+.+.+. ..+....+..|.+|++.|+++.|+.+....++..+++.+.+.+.+......+..++.++.+..++.+++.++
T Consensus 396 ~g~~~~~-~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (491)
T 4aps_A 396 VILGEML-ISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAKSEVAYFSYFGLGSVVLGIVLVFLSKR 474 (491)
T ss_dssp HHHHHHT-TTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGSSTTHHHHHTHHHHHHHHHHHHHC---
T ss_pred HHHHHHH-HhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444443 344556777899999999999999999999999999999887776554566777777777766666666555
Q ss_pred CCC
Q 047115 488 TKY 490 (522)
Q Consensus 488 ~~~ 490 (522)
.++
T Consensus 475 ~~~ 477 (491)
T 4aps_A 475 IQG 477 (491)
T ss_dssp ---
T ss_pred HHH
Confidence 443
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.95 E-value=5.1e-29 Score=253.78 Aligned_cols=357 Identities=12% Similarity=0.113 Sum_probs=254.7
Q ss_pred HHHHHHHhhhhhcchhhccccccHHHHHHhhhhhhhcccCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 047115 10 IVAATSGLIFGYDIGVSGGVTLMEPFLKKCFLEVYKKMKEDPKISNYGKFDSQLLAAFTSSLYIAGLIAFLFASKVTRAF 89 (522)
Q Consensus 10 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~ 89 (522)
...+++.+..+++.+...+.. |.+.+++ |.++.+.+++.+.+.++..++++++|+++||+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~------------------g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~ 62 (375)
T 2gfp_A 3 LMLVLLVAVGQMAQTIYIPAI--ADMARDL------------------NVREGAVQSVMGAYLLTYGVSQLFYGPISDRV 62 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--HHHHTTS------------------SSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHhhhh--HHHHHHc------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344556677777777776554 4544444 78999999999999999999999999999999
Q ss_pred ccccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhhhhHHHHHHHhhhhhhHHHHHHHHHHHhhhhhhhccc
Q 047115 90 GRKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCCYSNHCSIGGAAFNIYMLILGCVLLGVGIGFTSQSI 169 (522)
Q Consensus 90 Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~ 169 (522)
|||+++. .+.++.+++.++.+++++++.+++.|+++|++.+...+..
T Consensus 63 g~r~~~~---------------------------------~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~ 109 (375)
T 2gfp_A 63 GRRPVIL---------------------------------VGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGVMA 109 (375)
T ss_dssp CCCCCCH---------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCchhHH---------------------------------HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhhhH
Confidence 9999999 9999999999999999999999999999999999999999
Q ss_pred cccccccccccccccccCCcc-hhHHHHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHhhHHHHHHHHH-HhcccCC
Q 047115 170 QRFNQFAYMILLSSNFETTRL-SHIDFLLQISICYLILSANLLNYGTQKIKGSWGWRISLAMAAVPASILTI-GSLFLPE 247 (522)
Q Consensus 170 ~~~~~~~~~~~i~~~~~~~~~-g~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~gwr~~f~i~~~~~~~~~~-~~~~lpe 247 (522)
..+ +.| +.|+++ ++.+++.+.+..+|..+++.+++.+.+. .|||+.|.+.++..++..+ ..+++||
T Consensus 110 ~~~--------~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (375)
T 2gfp_A 110 RTL--------PRD-LYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTM---WNWRACYLFLLVLCAGVTFSMARWMPE 177 (375)
T ss_dssp HHH--------HHH-HHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCH---HHHHHHHHHHHHHHHHHHCCCCCSSCC
T ss_pred HHH--------HHH-HCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHHHCcc
Confidence 999 999 888777 9999999999999999999999988744 4899999987777666554 4567888
Q ss_pred ChHHHHHhCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHHhhccccchhHHHHHHHHHHhhhccchhhHhcHHHHHHH-c
Q 047115 248 TPNSIIQRNKDHQKAEEILQIVRNTTDVKAELDDIIRASSKIIHRIYRPQLVMAILIPFQQVTRVNVISFNAPVLFMT-I 326 (522)
Q Consensus 248 sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 326 (522)
+++. +++ +++.+ ++. + +.+++ ++.+......+...........+.|.++++ .
T Consensus 178 ~~~~---~~~-~~~~~---------~~~----~-------~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (375)
T 2gfp_A 178 TRPV---DAP-RTRLL---------TSY----K-------TLFGN---SGFNCYLLMLIGGLAGIAAFEACSGVLMGAVL 230 (375)
T ss_dssp CSTT---TCC-CCCTT---------TCS----T-------HHHHH---HHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHH
T ss_pred cCCC---Ccc-cccHH---------HHH----H-------HHhcC---cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7642 111 10000 000 0 11211 122222222233333344555666766655 6
Q ss_pred CCCCchhhHHHhHHHHHHHHHHHHhHHHHhhhccchHHHHHHHHH-HHHHHHHHHHHHHHhhCCCCCCcchhhHHHHHHH
Q 047115 327 KVRKSTSLLMSAVVPDGIGTVSTILPMILADKLGRTVLFLLGGIQ-ILVSQVMIRSIMAAQLGDHGGFNIGYAYLILFLI 405 (522)
Q Consensus 327 g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (522)
|++..+.+ .......++.+++.++.+++.||.+++. ..+... ...+...+..... .....+......
T Consensus 231 g~~~~~~g-~~~~~~~~~~~~~~~~~~~l~~r~~~~~--~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~ 298 (375)
T 2gfp_A 231 GLSSMTVS-ILFILPIPAAFFGAWFAGRPNKRFSTLM--WQSVICCLLAGLLMWIPDWF---------GVMNVWTLLVPA 298 (375)
T ss_dssp HHHHHHHH-HHHHTHHHHHHHHHHHHHTTTTHHHHHH--HHHHHHHHHTSSSSSHHHHH---------HHHHHHHHHHHH
T ss_pred CCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhh---------ccccHHHHHHHH
Confidence 88888888 8888889999999999999999998732 222222 2222221111110 012233333444
Q ss_pred HHHHHhhhccccccccccccccCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHH
Q 047115 406 CVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLVAQTFLAMLCHFKAGVFFCFGG 472 (522)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 472 (522)
++.+.+.+.. .+....+..|..| ++|+++.|+.+....++..+++.+.+.+.+..++...+.+.+
T Consensus 299 ~l~g~~~~~~-~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~ 363 (375)
T 2gfp_A 299 ALFFFGAGML-FPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMTL 363 (375)
T ss_dssp HHHHHHHHHT-SSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh-hHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 4444554443 3455566689888 899999999999999999999999999887766555544433
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.91 E-value=9.2e-24 Score=224.76 Aligned_cols=141 Identities=16% Similarity=0.110 Sum_probs=125.6
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHhhhhh-ccccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhhhhH
Q 047115 58 KFDSQLLAAFTSSLYIAGLIAFLFASKVTRAF-GRKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCCYS 136 (522)
Q Consensus 58 ~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~-Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 136 (522)
+++..+.+++.+.+.++..++.+++|+++||+ |||+++. .+.++.+
T Consensus 50 ~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~---------------------------------~~~~~~~ 96 (524)
T 2xut_A 50 ELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTIL---------------------------------WLSLIYC 96 (524)
T ss_dssp STTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHH---------------------------------HHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHH---------------------------------HHHHHHH
Confidence 38999999999999999999999999999999 9999999 9999999
Q ss_pred HHHHHHhhhh-hhHHHHHHHHHHHhhhhhhhccccccccccccccccccccCCcc-hhHHHH---HHHHHHHHHHHHHHH
Q 047115 137 NHCSIGGAAF-NIYMLILGCVLLGVGIGFTSQSIQRFNQFAYMILLSSNFETTRL-SHIDFL---LQISICYLILSANLL 211 (522)
Q Consensus 137 ~~~~~~~~a~-~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~-g~~~~~---~~~~~~lG~~~~~~~ 211 (522)
++.++.++++ +++.++++|++.|++.|...+...++ +.| ++|+++ +++.+. .+.+..+|..+++.+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~--------~~~-~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~ 167 (524)
T 2xut_A 97 VGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSF--------MGD-QFDQSNKSLAQKAFDMFYFTINFGSFFASLS 167 (524)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHH--------HHH-TCSTTTTTHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHH--------HHH-HcCccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998 99999999999999999999999999 999 888887 877666 889999999999999
Q ss_pred HhhhhccCCCCchHHHHHhhHHHHHHHHHHhc
Q 047115 212 NYGTQKIKGSWGWRISLAMAAVPASILTIGSL 243 (522)
Q Consensus 212 ~~~l~~~~~~~gwr~~f~i~~~~~~~~~~~~~ 243 (522)
++.+.+. .|||+.|++.++..++..+..+
T Consensus 168 ~~~l~~~---~g~~~~f~~~~~~~~~~~~~~~ 196 (524)
T 2xut_A 168 MPLLLKN---FGAAVAFGIPGVLMFVATVFFW 196 (524)
T ss_dssp STHHHHT---SCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcc---ccHHHHHHHHHHHHHHHHHHHH
Confidence 8888754 3799999987776665544443
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=2e-24 Score=223.57 Aligned_cols=353 Identities=10% Similarity=0.016 Sum_probs=209.9
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhhhhHH
Q 047115 58 KFDSQLLAAFTSSLYIAGLIAFLFASKVTRAFGRKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCCYSN 137 (522)
Q Consensus 58 ~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 137 (522)
|+++.+.|++.+.+.++..++++++|+++||+|||++++ .+..++++
T Consensus 39 g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~---------------------------------~~~~~~~~ 85 (417)
T 2cfq_A 39 HISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLL---------------------------------WIITGMLV 85 (417)
T ss_dssp CCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHH---------------------------------HHHHHTTS
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHH---------------------------------HHHHHHHH
Confidence 778999999999999999999999999999999999999 76666554
Q ss_pred HH---HHHhhhhhh-HHHHHHHHHHHhhhhhhhccccccccccccccccccccCC--cc-hhHHHHHHHHHHHHHHHHHH
Q 047115 138 HC---SIGGAAFNI-YMLILGCVLLGVGIGFTSQSIQRFNQFAYMILLSSNFETT--RL-SHIDFLLQISICYLILSANL 210 (522)
Q Consensus 138 ~~---~~~~~a~~~-~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~i~~~~~~~--~~-g~~~~~~~~~~~lG~~~~~~ 210 (522)
+. ....+++.. ..+..++++.|++.|...+..... +.+ +.++ ++ +...+....+..+|..++|.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--------~~~-~~~~~~~~~~~~~g~~~~~~~~g~~~~~~ 156 (417)
T 2cfq_A 86 MFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPA--------VEA-FIEKVSRRSNFEFGRARMFGCVGWALGAS 156 (417)
T ss_dssp CHHHHHHHTHHHHHHTTCCHHHHGGGSSTTHHHHTTHHH--------HHH-HHHHHHHHHTCCHHHHSSSTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH--------HHH-HHHHhhhhcccchHHHHHHHHHHHHHHHH
Confidence 32 212233222 123456666666666555444444 444 4332 23 66677777778889999999
Q ss_pred HHhhhhccCCCCchHHHHHhhHHHHHHHHHHhcccCCChHHHHHhCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHHhhc
Q 047115 211 LNYGTQKIKGSWGWRISLAMAAVPASILTIGSLFLPETPNSIIQRNKDHQKAEEILQIVRNTTDVKAELDDIIRASSKII 290 (522)
Q Consensus 211 ~~~~l~~~~~~~gwr~~f~i~~~~~~~~~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 290 (522)
+++.+.+ .+||+.|++.++..++..+..++.||+|+. +.+ .++.++ .+.++.. .++ ..+++
T Consensus 157 l~~~l~~----~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~----~~~~~~~---~~~----~~~~~ 217 (417)
T 2cfq_A 157 IVGIMFT----INNQFVFWLGSGCALILAVLLFFAKTDAPS---SAT-VANAVG----ANHSAFS---LKL----ALELF 217 (417)
T ss_dssp HHHHHHH----HCSHHHHTTTTTTTTTHHHHSCSSCCCCSC---SSC-SSSSSS----SCCCCCC---HHH----HHHHT
T ss_pred HHHHHHH----hchhHHHHHHHHHHHHHHHHHHHcCccccc---ccc-cccccc----ccccccc---HHH----HHHHh
Confidence 8887764 269999998776655555555555443311 001 000000 0000000 011 11334
Q ss_pred cccchhHHHHHHHHHHhhhccchhhHhcHHHHHHHc-C---CCCchhhHHHhHHHHHHHHHHHHhHHHHhhhccchHHHH
Q 047115 291 HRIYRPQLVMAILIPFQQVTRVNVISFNAPVLFMTI-K---VRKSTSLLMSAVVPDGIGTVSTILPMILADKLGRTVLFL 366 (522)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g---~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~ 366 (522)
+++..+...+. .+.....+.....+.|.++.+. + .+....+ .......++.+++.++.++++||+|||+.+.
T Consensus 218 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~ 293 (417)
T 2cfq_A 218 RQPKLWFLSLY---VIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFG-YVTTMGELLNASIMFFAPLIINRIGGKNALL 293 (417)
T ss_dssp TCHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHH-HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred cCCchhhHHHH---HHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHH-HHHHHHHHHHHHHHHHHHHHHHHhcHHHHHH
Confidence 33222222221 1111112222333456665443 2 1233334 5666777888899999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCCCcchhhHHHHHHHHHHHHhhhccccccccccccccCchhhhhHHHHHH-HHHHH
Q 047115 367 LGGIQILVSQVMIRSIMAAQLGDHGGFNIGYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSIT-VAVDL 445 (522)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~-~~~~~ 445 (522)
.+..+..++.+.+... ...+..++..++...+... ..+..+.+.+|.+|++.|+++.++. +....
T Consensus 294 ~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~ 359 (417)
T 2cfq_A 294 LAGTIMSVRIIGSSFA-------------TSALEVVILKTLHMFEVPF-LLVGCFKYITSQFEVRFSATIYLVCFCFFKQ 359 (417)
T ss_dssp HHHHHHHHHHHHHTTC-------------CSHHHHHHHTTHHHHHHHH-HHHHHHHHHHHHSCHHHHHHHHHHHHTTTHH
T ss_pred HHHHHHHHHHHHHHHh-------------ccHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHh
Confidence 7766665554333211 1122222222222222221 1223356778999999999999995 78888
Q ss_pred HHHHHHHHHHHHHHHhccch-hhHHHHHHHHHHHHHHHhhccCCC
Q 047115 446 LFTFLVAQTFLAMLCHFKAG-VFFCFGGWVAFMTTFVHFFLPETK 489 (522)
Q Consensus 446 ~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~i~~~~~~~~~~~~~ 489 (522)
+++.++|.+.|.+.++.++. .+.+.+++.++..++.+...||++
T Consensus 360 lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~ 404 (417)
T 2cfq_A 360 LAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp HHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred HHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 99999999999999887743 445555555555555555555543
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.28 E-value=1.2e-11 Score=127.85 Aligned_cols=173 Identities=10% Similarity=-0.028 Sum_probs=127.5
Q ss_pred HhhhccchhhHhcHHHHHHHcCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHH
Q 047115 306 FQQVTRVNVISFNAPVLFMTIKVRKSTSLLMSAVVPDGIGTVSTILPMILADKLGRTVLFLLGGIQILVSQVMIRSIMAA 385 (522)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (522)
+.............|.+.++. .+..+.+ +..+...++..++.++.|+++||+|||+.+..+.++..++.++.......
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~-~s~~~~g-~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~ 115 (451)
T 1pw4_A 38 AAYYLVRKNFALAMPYLVEQG-FSRGDLG-FALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWA 115 (451)
T ss_dssp HHHHHHHTSHHHHHHHTTSST-TCSSCHH-HHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh-ccHhHHH-HHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhc
Confidence 444444455666778888888 9999999 99999999999999999999999999999999998888887777652100
Q ss_pred hhCCCCCCcchhhHHHHHHHHHHHHhhhccccccccccccccCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-c
Q 047115 386 QLGDHGGFNIGYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLVAQTFLAMLCHFK-A 464 (522)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g-~ 464 (522)
..+.+..++...+.+.+.+.. .+....+++|.+|+++|+++.++.+....++..++|.+.+.+.+..+ |
T Consensus 116 ---------~~~~~~l~~~~~l~G~~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w 185 (451)
T 1pw4_A 116 ---------TSSIAVMFVLLFLCGWFQGMG-WPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDW 185 (451)
T ss_dssp ---------HSSSSHHHHHHHHHHHHHHHT-HHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCS
T ss_pred ---------cccHHHHHHHHHHHHHHhhhc-cchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH
Confidence 012223344444444444433 34445777899999999999999999999999999999999888877 6
Q ss_pred hh-hHHHHHHHHHHHHHHHhhccCCCC
Q 047115 465 GV-FFCFGGWVAFMTTFVHFFLPETKY 490 (522)
Q Consensus 465 ~~-~~~~~~~~~i~~~~~~~~~~~~~~ 490 (522)
.. +.+.+.+..+..++.++++||+++
T Consensus 186 ~~~f~~~~~~~~~~~~~~~~~~~~~~~ 212 (451)
T 1pw4_A 186 HAALYMPAFCAILVALFAFAMMRDTPQ 212 (451)
T ss_dssp TTCTHHHHHHHHHHHHHHHHHCCCSST
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCCHh
Confidence 54 455555555555666667776543
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=3.6e-10 Score=116.38 Aligned_cols=146 Identities=10% Similarity=-0.010 Sum_probs=113.0
Q ss_pred HhhhccchhhHhcHHHHHHHcCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHH
Q 047115 306 FQQVTRVNVISFNAPVLFMTIKVRKSTSLLMSAVVPDGIGTVSTILPMILADKLGRTVLFLLGGIQILVSQVMIRSIMAA 385 (522)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (522)
+.............|.+.+++|.+..+.+ +..+...++..++.++.|+++||+|||+.+..+..+..++.++......
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~s~~~~g-~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~- 113 (438)
T 3o7q_A 36 FLWAVANNLNDILLPQFQQAFTLTNFQAG-LIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAE- 113 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCCCSHHHH-HHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHhHHHHHHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccc-
Confidence 44444445666778888899999999999 9999999999999999999999999999999999888888777633221
Q ss_pred hhCCCCCCcchhhHHHHHHHHHHHHhhhccccccccccccccCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-Hhcc
Q 047115 386 QLGDHGGFNIGYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLVAQTFLAML-CHFK 463 (522)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~g 463 (522)
.+..+..++..++.+.+.+.. .+....+.+|.+|+++|+++.++.+....++..+++.+.+.+. +..+
T Consensus 114 ---------~~~~~~l~~~~~l~G~~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~ 182 (438)
T 3o7q_A 114 ---------IMNYTLFLVGLFIIAAGLGCL-ETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVP 182 (438)
T ss_dssp ---------TTCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSC
T ss_pred ---------cccHHHHHHHHHHHHhhHHHh-hhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 122344444445555554433 3344577789999999999999999999999999999999888 4443
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.10 E-value=1.6e-09 Score=113.59 Aligned_cols=156 Identities=16% Similarity=0.090 Sum_probs=113.6
Q ss_pred HhhhccchhhHhcHHHHHHH------cCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhh-ccchHHHHHHHHHHHHHHHH
Q 047115 306 FQQVTRVNVISFNAPVLFMT------IKVRKSTSLLMSAVVPDGIGTVSTILPMILADK-LGRTVLFLLGGIQILVSQVM 378 (522)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~~~~~~~~~~~~~~~ 378 (522)
+.....++....+.+.++++ .|++..+.+ +..+...++..++.++.|+++|| +|||+.+..+..+..++.++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~ 101 (491)
T 4aps_A 23 MWERFSYYGMRAILLYYMWFLISTGDLHITRATAA-SIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIV 101 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHH
Confidence 44444445555666666644 799999999 99999999999999999999999 89999999988888777766
Q ss_pred HHHHHHHhhCCCCCCcchhhHHHHHHHHHHHHhhhccccccccccccccCchhh--hhHHHHHHHHHHHHHHHHHHHHHH
Q 047115 379 IRSIMAAQLGDHGGFNIGYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFPLEI--RSAGQSITVAVDLLFTFLVAQTFL 456 (522)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~--r~~~~g~~~~~~~~~~~~~~~~~~ 456 (522)
+... ++.+...+...+.+.+.+.. .+....+.+|.+|++. |+.+.++.+....++..++|.+.+
T Consensus 102 ~~~~-------------~~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~ 167 (491)
T 4aps_A 102 LALP-------------FGASALFGSIILIIIGTGFL-KPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVG 167 (491)
T ss_dssp HHSC-------------CSTTHHHHHHHHHHHHHHHH-HHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHh-------------hhHHHHHHHHHHHHHHHHhc-cchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHH
Confidence 5432 12233334444444444433 3445577789999988 777888888999999999999999
Q ss_pred HHHHhccchhhHHHHHHHHH
Q 047115 457 AMLCHFKAGVFFCFGGWVAF 476 (522)
Q Consensus 457 ~~~~~~g~~~~~~~~~~~~i 476 (522)
.+.++.+|...+...++..+
T Consensus 168 ~l~~~~g~~~~f~~~~~~~~ 187 (491)
T 4aps_A 168 AAQEAAGYHVAFSLAAIGMF 187 (491)
T ss_dssp HHHHHSCHHHHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHH
Confidence 99998886554443333333
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.08 E-value=1.7e-10 Score=116.56 Aligned_cols=170 Identities=12% Similarity=0.058 Sum_probs=123.8
Q ss_pred HhhhccchhhHhcHHHHHHHcCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHH
Q 047115 306 FQQVTRVNVISFNAPVLFMTIKVRKSTSLLMSAVVPDGIGTVSTILPMILADKLGRTVLFLLGGIQILVSQVMIRSIMAA 385 (522)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (522)
+.............|.+.++.|.+..+.+ +..+...++..++.++.|+++||+|||+.+..+.....++.++.....
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~g~s~~~~g-~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~-- 86 (375)
T 2gfp_A 10 AVGQMAQTIYIPAIADMARDLNVREGAVQ-SVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTS-- 86 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSSSTTHHHH-HHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHhhhhHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhc--
Confidence 33333444555667777788999999999 999999999999999999999999999999988888888877666542
Q ss_pred hhCCCCCCcchhhHHHHHHHHHHHHhhhccccccccccccccCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Q 047115 386 QLGDHGGFNIGYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLVAQTFLAMLCHFKAG 465 (522)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~ 465 (522)
+.+...+...+.+.+.+. ..+....+..|.+|+++|+++.++.+....++..++|.+.+.+.++.+|.
T Consensus 87 -----------~~~~l~~~~~l~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ 154 (375)
T 2gfp_A 87 -----------SLTVLIAASAMQGMGTGV-GGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWR 154 (375)
T ss_dssp -----------HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred -----------cHHHHHHHHHHHHHHHHh-hhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHH
Confidence 223333344444444332 34455567789999999999999999999999999999999888877765
Q ss_pred h-hHHHHHHHHHHHHHHHhhccCCCC
Q 047115 466 V-FFCFGGWVAFMTTFVHFFLPETKY 490 (522)
Q Consensus 466 ~-~~~~~~~~~i~~~~~~~~~~~~~~ 490 (522)
. +.+.+....+..+...+.+||+++
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (375)
T 2gfp_A 155 ACYLFLLVLCAGVTFSMARWMPETRP 180 (375)
T ss_dssp HHHHHHHHHHHHHHCCCCCSSCCCST
T ss_pred HHHHHHHHHHHHHHHHHHHHCcccCC
Confidence 4 444444444444435556676543
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.04 E-value=1.6e-09 Score=114.51 Aligned_cols=156 Identities=14% Similarity=0.027 Sum_probs=111.2
Q ss_pred cchhhHhcHHHHH-HHcC------CCCchhhHHHhHHHHHHHHHHHHhHHHHhhhc-cchHHHHHHHHHHHHHHHHHHHH
Q 047115 311 RVNVISFNAPVLF-MTIK------VRKSTSLLMSAVVPDGIGTVSTILPMILADKL-GRTVLFLLGGIQILVSQVMIRSI 382 (522)
Q Consensus 311 ~~~~~~~~~~~~~-~~~g------~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~ 382 (522)
.++....+.+.++ ++.| ++..+.+ +..+...++..++.++.|+++||+ |||+.+..+.++..++.+++...
T Consensus 27 ~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g-~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~ 105 (524)
T 2xut_A 27 SFYGMRNILTPFLMTALLLSIPEELRGAVAK-DVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIF 105 (524)
T ss_dssp HHHHHHHHHHHHHHHSCSSCCSSSTTTTTHH-HHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhccccccccCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHh
Confidence 3444556666666 4578 9999999 899999999999999999999999 99999998888877776665542
Q ss_pred HHHhhCCCCCCcchhhHHHHHHHHHHHHhhhccccccccccccccCchhhhhHHHHH---HHHHHHHHHHHHHHHHHHHH
Q 047115 383 MAAQLGDHGGFNIGYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSI---TVAVDLLFTFLVAQTFLAML 459 (522)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~---~~~~~~~~~~~~~~~~~~~~ 459 (522)
....+...+...+.+.+.+. ..+....+.+|.+|++.|++..+. .+....++..++|.+.+.+.
T Consensus 106 ------------~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~ 172 (524)
T 2xut_A 106 ------------EHSVQGFYTGLFLIALGSGG-IKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLL 172 (524)
T ss_dssp ------------SSCHHHHHHHHHHHHHHHHT-THHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHH
T ss_pred ------------cccHHHHHHHHHHHHHhccc-cchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 11233344444444444443 334555777899999999776665 88889999999999999998
Q ss_pred HhccchhhHHHHHHHHHHHHH
Q 047115 460 CHFKAGVFFCFGGWVAFMTTF 480 (522)
Q Consensus 460 ~~~g~~~~~~~~~~~~i~~~~ 480 (522)
++.+|...+...++..+...+
T Consensus 173 ~~~g~~~~f~~~~~~~~~~~~ 193 (524)
T 2xut_A 173 KNFGAAVAFGIPGVLMFVATV 193 (524)
T ss_dssp HTSCHHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHH
Confidence 887765444433333333333
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=9e-09 Score=107.68 Aligned_cols=152 Identities=13% Similarity=0.043 Sum_probs=98.3
Q ss_pred HHhHHHHHHHHHHHHhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHhhCC-----CCCCcchhhHHHHHHHHHHHH
Q 047115 336 MSAVVPDGIGTVSTILPMILADKLGRTVLFLLGGIQILVSQVMIRSIMAAQLGD-----HGGFNIGYAYLILFLICVYKA 410 (522)
Q Consensus 336 ~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ 410 (522)
++.+...++.++|+++.|+++||+|||+.+.++.++..++.++.++........ ....-.++.+..++.-++.+.
T Consensus 59 ~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~ 138 (491)
T 4gc0_A 59 FCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGI 138 (491)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHH
Confidence 566778899999999999999999999999999988888877665321000000 000001233344444445444
Q ss_pred hhhccccccccccccccCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--------chhhHHHHHHHHHHHHHHH
Q 047115 411 GFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLVAQTFLAMLCHFK--------AGVFFCFGGWVAFMTTFVH 482 (522)
Q Consensus 411 ~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g--------~~~~~~~~~~~~i~~~~~~ 482 (522)
+.+. ..+....+.+|..|++.|+...++.+.....+..+++.+......... |........+..+...+..
T Consensus 139 g~G~-~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (491)
T 4gc0_A 139 GVGL-ASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLL 217 (491)
T ss_dssp HHHH-HHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHG
T ss_pred HHHH-HHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhh
Confidence 4443 334556788999999999999999988888888777766555544321 2333444444445555566
Q ss_pred hhccCC
Q 047115 483 FFLPET 488 (522)
Q Consensus 483 ~~~~~~ 488 (522)
++.||+
T Consensus 218 ~~~peS 223 (491)
T 4gc0_A 218 YTVPES 223 (491)
T ss_dssp GGSCCC
T ss_pred hcCCCC
Confidence 677875
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=3e-09 Score=109.38 Aligned_cols=145 Identities=12% Similarity=0.085 Sum_probs=116.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhhhhHHHH
Q 047115 60 DSQLLAAFTSSLYIAGLIAFLFASKVTRAFGRKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCCYSNHC 139 (522)
Q Consensus 60 ~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 139 (522)
+....++..+...++..++.++.|+++||+|||+++. .+.++.+++.
T Consensus 257 ~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~---------------------------------~~~~~~~~~~ 303 (417)
T 2cfq_A 257 GTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALL---------------------------------LAGTIMSVRI 303 (417)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH---------------------------------HHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHH---------------------------------HHHHHHHHHH
Confidence 3456788888888999999999999999999999999 8888888887
Q ss_pred HHHhhhhhhHHHHHHHHHHHhhhhhhhccccccccccccccccccccCCcc-hhHHHH-HHHHHHHHHHHHHHHHhhhhc
Q 047115 140 SIGGAAFNIYMLILGCVLLGVGIGFTSQSIQRFNQFAYMILLSSNFETTRL-SHIDFL-LQISICYLILSANLLNYGTQK 217 (522)
Q Consensus 140 ~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~-g~~~~~-~~~~~~lG~~~~~~~~~~l~~ 217 (522)
++.++.++.+.+++..++.|++.+...+....+ ++| .+|++. +...++ ++....+|..++|.+++.+.+
T Consensus 304 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--------~~~-~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~ 374 (417)
T 2cfq_A 304 IGSSFATSALEVVILKTLHMFEVPFLLVGCFKY--------ITS-QFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYE 374 (417)
T ss_dssp HHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHH--------HHH-HSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH--------HHH-HCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHH
Confidence 778888888888888888888877766666677 999 889888 998888 478888999999999887775
Q ss_pred cCCCCchHHHHHhhHHHHHHHHHH-hcccCCCh
Q 047115 218 IKGSWGWRISLAMAAVPASILTIG-SLFLPETP 249 (522)
Q Consensus 218 ~~~~~gwr~~f~i~~~~~~~~~~~-~~~lpesp 249 (522)
. .|++..|.+.++..++..+. ....||.+
T Consensus 375 ~---~g~~~~f~~~~~~~l~~~~~~~~~~~~~~ 404 (417)
T 2cfq_A 375 S---IGFQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp H---SHHHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred h---cCcHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 3 37888888877766665544 44456543
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 522 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.98 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.93 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.3 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 98.95 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.98 E-value=1.2e-32 Score=283.34 Aligned_cols=398 Identities=12% Similarity=-0.027 Sum_probs=264.7
Q ss_pred HHHHHHHHHHHHHhhhhhcchhhccccccHHHHHHhhhhhhhcccCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 047115 4 FIVLSCIVAATSGLIFGYDIGVSGGVTLMEPFLKKCFLEVYKKMKEDPKISNYGKFDSQLLAAFTSSLYIAGLIAFLFAS 83 (522)
Q Consensus 4 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g 83 (522)
++|.+.....++.+..++|...++.+. |++++ +|+|.++.|++.+++.+++.++++++|
T Consensus 22 ~~w~i~~~~~~~~~~~~~~~~~~~~~~---p~~~~------------------~g~s~~~~g~~~s~~~~~~~~~~~~~G 80 (447)
T d1pw4a_ 22 LRWQIFLGIFFGYAAYYLVRKNFALAM---PYLVE------------------QGFSRGDLGFALSGISIAYGFSKFIMG 80 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSHHHHH---HHTTS------------------STTCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH------------------hCcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457777777788888888877766443 23222 378999999999999999999999999
Q ss_pred HhhhhhccccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhhhhHHHHHHHhhhh----hhHHHHHHHHHHH
Q 047115 84 KVTRAFGRKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCCYSNHCSIGGAAF----NIYMLILGCVLLG 159 (522)
Q Consensus 84 ~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~----~~~~l~~~r~l~G 159 (522)
+++||+|||+++. .+.++.+++.++++++. +++.+++.|++.|
T Consensus 81 ~l~Dr~g~r~~~~---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 127 (447)
T d1pw4a_ 81 SVSDRSNPRVFLP---------------------------------AGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCG 127 (447)
T ss_dssp HHHHHSCHHHHHH---------------------------------HHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHH
T ss_pred HHHHHcCchHHHH---------------------------------HHHHHHHHHHhhccccchhhhhHHHHHHHHHHHH
Confidence 9999999999999 99999999999887764 7789999999999
Q ss_pred hhhhhhhccccccccccccccccccccCCcc-hhHHHHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHhhHHHHHHH
Q 047115 160 VGIGFTSQSIQRFNQFAYMILLSSNFETTRL-SHIDFLLQISICYLILSANLLNYGTQKIKGSWGWRISLAMAAVPASIL 238 (522)
Q Consensus 160 ~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~-g~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~gwr~~f~i~~~~~~~~ 238 (522)
++.|...+....+ ++| ++|+++ ++++++.+.+..+|..+++.++........ +||+.|++.++..++.
T Consensus 128 ~~~~~~~~~~~~~--------i~~-~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~--~w~~~~~~~~~~~~~~ 196 (447)
T d1pw4a_ 128 WFQGMGWPPCGRT--------MVH-WWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFN--DWHAALYMPAFCAILV 196 (447)
T ss_dssp HHHHHTHHHHHHH--------HHT-TCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTC--CSTTCTHHHHHHHHHH
T ss_pred HhhhhhhhHHHHH--------HHH-HHHhhcccccccccccccchhhhhhhhhhhhHhhhhh--cccccchhhhhhHHHH
Confidence 9999999999999 999 888888 999999999999999999988877665443 7999888876655554
Q ss_pred -HHHhcccCCChHHHHHhCCC---HHHHHHHHHHHcCCcchHHHHHHHHHHHHhhccccchhHHHHHHHHHHhhhccchh
Q 047115 239 -TIGSLFLPETPNSIIQRNKD---HQKAEEILQIVRNTTDVKAELDDIIRASSKIIHRIYRPQLVMAILIPFQQVTRVNV 314 (522)
Q Consensus 239 -~~~~~~lpesp~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (522)
++...+.+|+|+.......+ .++.++..++.+ ++....+...+..++ .+..+......+......+.
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 267 (447)
T d1pw4a_ 197 ALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAE------QELTAKQIFMQYVLP---NKLLWYIAIANVFVYLLRYG 267 (447)
T ss_dssp HHHHHHHCCCSSTTTCCCSCTTTCCC-------------------CCTHHHHHHTSS---CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcccchhhcccchhhhhhhhcccchhhccc------cccchhhHHHHHHHc---CchHHHHHHHhhhhhhhhhc
Confidence 44455566666432111110 000000000000 000000000112222 12222222222444444455
Q ss_pred hHhcHHHHHH-HcCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC
Q 047115 315 ISFNAPVLFM-TIKVRKSTSLLMSAVVPDGIGTVSTILPMILADKLGRTVLFLLGGIQILVSQVMIRSIMAAQLGDHGGF 393 (522)
Q Consensus 315 ~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (522)
...+.|.++. ..+++..+.+ .......+..+++.++.+++.||++|++..........+......... ..
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~ 338 (447)
T d1pw4a_ 268 ILDWSPTYLKEVKHFALDKSS-WAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYW--------MN 338 (447)
T ss_dssp HHHHHHHHBTTBSCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTT--------SC
T ss_pred chhhhhhhcccccccccchhh-hhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHH--------hc
Confidence 6677777775 4588888888 888999999999999999999999987654444333333222222211 00
Q ss_pred cchhhHHHHHHHHHHHHhhhccccccccccccccCchhhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHhccchh-hHHHH
Q 047115 394 NIGYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLF-TFLVAQTFLAMLCHFKAGV-FFCFG 471 (522)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~g~~~-~~~~~ 471 (522)
.....+...+..++.+.+.. ...+....+..|.+|++.|+++.|+.+.+++++ ..++|.+.+.+.++.|+.. +.+++
T Consensus 339 ~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~ 417 (447)
T d1pw4a_ 339 PAGNPTVDMICMIVIGFLIY-GPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMI 417 (447)
T ss_dssp CTTCHHHHHHHHHHHHHHHT-HHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHH
Confidence 12223333333333333322 233455567789999999999999999988875 5567888999999988644 44444
Q ss_pred HHHHHHHHHHHhhc
Q 047115 472 GWVAFMTTFVHFFL 485 (522)
Q Consensus 472 ~~~~i~~~~~~~~~ 485 (522)
++..+..++...+.
T Consensus 418 ~~~~~~~~~~~~~~ 431 (447)
T d1pw4a_ 418 GGSILAVILLIVVM 431 (447)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444444443
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.93 E-value=2.5e-25 Score=223.77 Aligned_cols=358 Identities=9% Similarity=0.001 Sum_probs=223.6
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhhhhHH
Q 047115 58 KFDSQLLAAFTSSLYIAGLIAFLFASKVTRAFGRKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCCYSN 137 (522)
Q Consensus 58 ~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 137 (522)
|+|+++.|++.+++.++..++++++|+++||+|||++++ .+..+..+
T Consensus 39 g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~---------------------------------~~~~~~~~ 85 (417)
T d1pv7a_ 39 HISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLL---------------------------------WIITGMLV 85 (417)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHH---------------------------------HHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHH---------------------------------HHHHHHHH
Confidence 789999999999999999999999999999999999999 88888888
Q ss_pred HHHHHhhhhhhHHH----HHHHHHHHhhhhhhhccccccccccccccccccccCC-cc-hhHHHHHHHHHHHHHHHHHHH
Q 047115 138 HCSIGGAAFNIYML----ILGCVLLGVGIGFTSQSIQRFNQFAYMILLSSNFETT-RL-SHIDFLLQISICYLILSANLL 211 (522)
Q Consensus 138 ~~~~~~~a~~~~~l----~~~r~l~G~~~g~~~~~~~~~~~~~~~~~i~~~~~~~-~~-g~~~~~~~~~~~lG~~~~~~~ 211 (522)
+..+..+..+.... ++.+.+.+.+.+......... ..+...++ ++ .+..+........+..+++.+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (417)
T d1pv7a_ 86 MFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPA--------VEAFIEKVSRRSNFEFGRARMFGCVGWALGASI 157 (417)
T ss_dssp THHHHHHHTHHHHHHTTCHHHHHHTTTTGGGGGTTHHHH--------HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHhhhcccccccchhhc--------ccccccchhhhhHHHHHHHhhhhcccccccccc
Confidence 88888777665544 344444444444443333332 33302222 23 556677778888888899988
Q ss_pred HhhhhccCCCCchHHHHHh-hHHHHHHHHHHhcccCCChHHHHHhCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHHhhc
Q 047115 212 NYGTQKIKGSWGWRISLAM-AAVPASILTIGSLFLPETPNSIIQRNKDHQKAEEILQIVRNTTDVKAELDDIIRASSKII 290 (522)
Q Consensus 212 ~~~l~~~~~~~gwr~~f~i-~~~~~~~~~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 290 (522)
++.+.+. +|+..+.. .....+...+..+..+|+|+. +++ .++.+ ...+........ +..
T Consensus 158 ~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~-----~~~~~~~~~~~~-------~~~ 217 (417)
T d1pv7a_ 158 VGIMFTI----NNQFVFWLGSGCALILAVLLFFAKTDAPSS---ATV-ANAVG-----ANHSAFSLKLAL-------ELF 217 (417)
T ss_dssp HHHHHHH----CHHHHHHHHHHHHHHHHHHHHSSCCCSCSS---SCS-SHHHH-----SCCCCCCHHHHH-------HHT
T ss_pred ccccccc----cccccccchhhHHHHHHHHHHHHhcccccc---hhh-hhhhh-----hhcccccccccc-------ccc
Confidence 8877644 35555544 445555556666777776642 111 11111 011111111111 112
Q ss_pred cccchhHHHHHHHHHHhhhccchhhHhcHHHHHHH----cCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhhccchHHHH
Q 047115 291 HRIYRPQLVMAILIPFQQVTRVNVISFNAPVLFMT----IKVRKSTSLLMSAVVPDGIGTVSTILPMILADKLGRTVLFL 366 (522)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~ 366 (522)
+.+..+............. .......+.+... .+.+..... .......++..++..+.+++.||.++|+.+.
T Consensus 218 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~ 293 (417)
T d1pv7a_ 218 RQPKLWFLSLYVIGVSCTY---DVFDQQFANFFTSFFATGEQGTRVFG-YVTTMGELLNASIMFFAPLIINRIGGKNALL 293 (417)
T ss_dssp TSSHHHHHHHHHHHHHHHH---HHHHHHHHHHHTTSSSCHHHHHHHHH-HHHHHHHHHHHHHHTTHHHHHHHHCHHHHHH
T ss_pred ccccccchhhhhHHHHHHH---Hhhhccccccccccccccccchhhhc-ccccccccccccchhhhhhhhcccccccchh
Confidence 2222222222222221111 1111122222211 122333444 5667778888999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCCCcchhhHHHHHHHHHHHHhhhccccccccccccccCchhhhhHHHHHHH-HHHH
Q 047115 367 LGGIQILVSQVMIRSIMAAQLGDHGGFNIGYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITV-AVDL 445 (522)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~-~~~~ 445 (522)
.+..+..++.+.+... ++.+...+...+.+.+.+... +....+..|.+|++.|+++.|+.. ....
T Consensus 294 ~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~l~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (417)
T d1pv7a_ 294 LAGTIMSVRIIGSSFA-------------TSALEVVILKTLHMFEVPFLL-VGCFKYITSQFEVRFSATIYLVCFCFFKQ 359 (417)
T ss_dssp HHHHHHHHHHHHHHTC-------------CCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHSCGGGHHHHHHHHHTTTHH
T ss_pred hhHHHHHHhhhccccc-------------cccchhhHHHHHHHHHHHHHH-HHHHHHHHHHCCHhHHHHHHHHHHHHHHH
Confidence 8887777766655432 223344444444444444333 344566789999999999999865 4567
Q ss_pred HHHHHHHHHHHHHHHhccc-hhhHHHHHHHHHHHHHHHhhccCCCCCCHH
Q 047115 446 LFTFLVAQTFLAMLCHFKA-GVFFCFGGWVAFMTTFVHFFLPETKYMPIE 494 (522)
Q Consensus 446 ~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 494 (522)
++..++|.+.|.+.|+.|+ ..+.+.+++.++..++..+.+++++..+.+
T Consensus 360 ~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 409 (417)
T d1pv7a_ 360 LAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLSLL 409 (417)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCCSSCTTHH
T ss_pred HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcCCCccchh
Confidence 8999999999999999985 456666777777777777777766555543
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.30 E-value=2.7e-12 Score=129.78 Aligned_cols=163 Identities=10% Similarity=0.014 Sum_probs=117.5
Q ss_pred hHhcHHHHHHHcCCCCchhhHHHhHHHHHHHHHHHHhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCc
Q 047115 315 ISFNAPVLFMTIKVRKSTSLLMSAVVPDGIGTVSTILPMILADKLGRTVLFLLGGIQILVSQVMIRSIMAAQLGDHGGFN 394 (522)
Q Consensus 315 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (522)
+....|. +++.|++..+.+ ++.+...++..++.++.|+++||+|||+.+..+.++..++.++........
T Consensus 44 ~~~~~p~-~~~~g~s~~~~g-~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~-------- 113 (447)
T d1pw4a_ 44 FALAMPY-LVEQGFSRGDLG-FALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWAT-------- 113 (447)
T ss_dssp HHHHHHH-TTSSTTCSSCHH-HHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHH--------
T ss_pred HHHHHHH-HHHhCcCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhccccchhh--------
Confidence 4444454 456899999999 999999999999999999999999999999999888888777766543211
Q ss_pred chhhHHHHHHHHHHHHhhhccccccccccccccCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-c-hhhHHHHH
Q 047115 395 IGYAYLILFLICVYKAGFAFSRGPLGWLVPSEIFPLEIRSAGQSITVAVDLLFTFLVAQTFLAMLCHFK-A-GVFFCFGG 472 (522)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g-~-~~~~~~~~ 472 (522)
...+..++...+.+.+.+... +....+.+|.+|+++|+++.++.+....++..+++.+.+...+..+ | ..+++.+.
T Consensus 114 -~~~~~~~~~~~~~g~~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~ 191 (447)
T d1pw4a_ 114 -SSIAVMFVLLFLCGWFQGMGW-PPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAF 191 (447)
T ss_dssp -SSSSHHHHHHHHHHHHHHHTH-HHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHH
T ss_pred -hhHHHHHHHHHHHHHhhhhhh-hHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhhhcccccchhhhh
Confidence 112233333344444443333 3444666899999999999999999999999999988887777654 4 34555555
Q ss_pred HHHHHHHHHHhhccCCC
Q 047115 473 WVAFMTTFVHFFLPETK 489 (522)
Q Consensus 473 ~~~i~~~~~~~~~~~~~ 489 (522)
+..+..++.+.+.++.+
T Consensus 192 ~~~~~~~~~~~~~~~~~ 208 (447)
T d1pw4a_ 192 CAILVALFAFAMMRDTP 208 (447)
T ss_dssp HHHHHHHHHHHHCCCSS
T ss_pred hHHHHHHHHHHhcccch
Confidence 55566666666665543
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=98.95 E-value=3.2e-10 Score=111.77 Aligned_cols=141 Identities=13% Similarity=0.082 Sum_probs=122.1
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccCcccchhhhhhhhhhhhhhhhcccccccchhhhhHH
Q 047115 58 KFDSQLLAAFTSSLYIAGLIAFLFASKVTRAFGRKASILPKFQGRNADAIGLQKTEKELSYKRIETNLEQCSCCSCCYSN 137 (522)
Q Consensus 58 ~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 137 (522)
+.+....+...+...++..++..+.+++.||+|||+.+. .+.++.++
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~---------------------------------~~~~~~~~ 301 (417)
T d1pv7a_ 255 EQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALL---------------------------------LAGTIMSV 301 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHH---------------------------------HHHHHHHH
T ss_pred ccchhhhcccccccccccccchhhhhhhhcccccccchh---------------------------------hhHHHHHH
Confidence 346677888889999999999999999999999999999 99999999
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHhhhhhhhccccccccccccccccccccCCcc-hhHHHHH-HHHHHHHHHHHHHHHhhh
Q 047115 138 HCSIGGAAFNIYMLILGCVLLGVGIGFTSQSIQRFNQFAYMILLSSNFETTRL-SHIDFLL-QISICYLILSANLLNYGT 215 (522)
Q Consensus 138 ~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~-g~~~~~~-~~~~~lG~~~~~~~~~~l 215 (522)
+.++..+.++.+.+++..++.|++.+...+....+ +.| ..|+++ ++..++. +....+|..+++.+++.+
T Consensus 302 ~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~--------~~~-~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l 372 (417)
T d1pv7a_ 302 RIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKY--------ITS-QFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNM 372 (417)
T ss_dssp HHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHH--------HHH-HSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred hhhccccccccchhhHHHHHHHHHHHHHHHHHHHH--------HHH-HCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999 999 999988 9999975 567789999999998888
Q ss_pred hccCCCCchHHHHHhhHHHHHHHHHHhc
Q 047115 216 QKIKGSWGWRISLAMAAVPASILTIGSL 243 (522)
Q Consensus 216 ~~~~~~~gwr~~f~i~~~~~~~~~~~~~ 243 (522)
.+.. ||+..|++.++..++..+...
T Consensus 373 ~~~~---g~~~~~~~~~~~~~~~~~~~~ 397 (417)
T d1pv7a_ 373 YESI---GFQGAYLVLGLVALGFTLISV 397 (417)
T ss_dssp HHHH---CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH---CHHHHHHHHHHHHHHHHHHHH
Confidence 7554 799998887666655444433
|