Citrus Sinensis ID: 047187

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------34
Protein Sequence
MGEEVRMTEYEVNDKGDYNGDDERIPEWEMGLPNGTDLTPLSQSLIPPELASAFSILPIPCRTHLDVNRASQTTLSSIRGSHAHSLSSTDNNNSNNLKTLTENRDPMVTETEEQDQNGSFVDSRSKSRRPDCTEEADSALRTDNSNEDPSARTLKRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRMQGLSNDDPSSSDHQLFASTPVPPHNNGSGNSGHVGMAAYGAPAGMMTAPMYGMINHQGFHHGHGFDPSMYNMNMNMGMGMNMNMGMNNMMHQQRDWSVNKHGYGHGHGQGSVVSYPQHVAPSSDK
Secondary Structure (PSIPRED)
cccccccccEEEccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccHHHHHHHccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccEEEEccccccccccccccccHHHHHHcccccHHHccccccccccHHHHHHccccccccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcHHHHHHHHHHHHHHcccccccHHHHHHHccccccHHHHHHHHHHHHHHHHHHcccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mgeevrmteyevndkgdyngdderipewemglpngtdltplsqslippelasafsilpipcrthldvnrasqttlssirgshahslsstdnnnsnnlktltenrdpmvteteeqdqngsfvdsrsksrrpdcteeadsalrtdnsnedpsartlkrprlvwtpqlHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRMqglsnddpsssdhqlfastpvpphnngsgnsghvgmaaygapagmmtapmygminhqgfhhghgfdpsmynmnmnmgmgmnmnmgmnnmmhqqrdwsvnkhgyghghgqgsvvsypqhvapssdk
Flexible Loop (DISEMBL)
mgeevrmteyevndkgdyngddeRIPEWEMGLPNGTDLTPLSQSLIPPELASAFSILPIPCRTHLDVNRASQTTLSSIRgshahslsstdnnnsnnLKTLTENRDPmvteteeqdqngsfvdsrsksrrpdcteeadsalrtdnsnedpsartlkrprlvwtpqLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRMQGLSNDDPSSSDHQLFASTPVPPHNNGSGNSGHVGMAAYGAPAGMMTAPMYGMINHQGFHHGHGFDPSMYNMNMNMGMGMNMNMGMNNMMHQQRDWSVNKHGYGHGHGqgsvvsypqhvapssdk
Low Complexity Region (SEG)
MGEEVRMTEYEVNDKGDYNGDDERIPEWEMGLPNGTDLTPLSQSLIPPELASAFSILPIPCRTHLDVNRASQTTLSSIRGSHAHslsstdnnnsnnlktltenRDPMVTETEEQDQNGSFVDSRSKSRRPDCTEEADSALRTDNSNEDPSARTLKRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRMQGLSNDDPSSSDHQLFASTpvpphnngsgnsghvgmaaygapagmmtapmygmINHQGFHHGHGFDPSMYnmnmnmgmgmnmnmgmnnmmHQQRDWSVNKHGYGHGHGQGSVVSYPQHVAPSSDK
Disordered region (IsUnstruct)
********************************************LIPPELASAFSILPIPCRTHLDV******************************************************************************************RLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKR*************************************AAYGAPAGMMTAPMYGMINHQGFHHGHGFDPSMY*******************************************************
Disordered Region (DISOPRED)
********EYEVNDKGDYNGDDERIPEWEMGLPNGTDLTPL***LIPPELASAFSILPIPCRTHLD*********************************************************************************************VWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYR***********************************************************************************************************************************
Disordered Region (DISEMBL)
********EYEVNDKGDYNGDDERIPEWEMGLPNGTDLTPLSQSLIPPELASAFSILPIPCRTHLDVNRASQ*******************NNSNNLKTLTENRDPM********************************************RTLKRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRMQG***********QLFASTPVPPHNNGSGNSGHVGMAAYGAPAGMMTAPMYGMINHQGFHHGHGFDPSMYNMNMNMGMGMNMNMGMNNMMHQQRDWSVNKHGYGHGHGQGSVVSYP*********
Disordered Region (DISPRO)
****VR*****VN****YNGDDERIPEWEMGLPNGTDLTPLSQSLIPPELASAFSILPIPCRTHLDVNRASQTT*********************************************************************************RPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRMQ*********************************GMAAYGAPAGMMTAPMYGMINHQGFHHGHGFDPSMYNMNMNMGMGMNMNMGMNNMMH****W*VNKH************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGEEVRMTEYEVNDKGDYNGDDERIPEWEMGLPNGTDLTPLSQSLIPPELASAFSILPIPCRTHLDVNRASQTTLSSIRGSHAHSLSSTDNNNSNNLKTLTENRDPMVTETEEQDQNGSFVDSRSKSRRPDCTEEADSALRTDNSNEDPSARTLKRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRMQGLSNDDPSSSDHQLFASTPVPPHNNGSGNSGHVGMAAYGAPAGMMTAPMYGMINHQGFHHGHGFDPSMYNMNMNMGMGMNMNMGMNNMMHQQRDWSVNKHGYGHGHGQGSVVSYPQHVAPSSDK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	339	2.2.26 [Sep-21-2011]
Q9ZWJ9	664	Two-component response re	no	no	0.327	0.167	0.461	5e-22
Q940D0	690	Two-component response re	no	no	0.262	0.128	0.531	1e-21
P62598	596	Two-component response re	no	no	0.300	0.171	0.444	3e-19
Q9FGT7	635	Two-component response re	no	no	0.182	0.097	0.645	4e-19
O49397	552	Two-component response re	no	no	0.203	0.125	0.577	2e-18
Q8L9Y3	382	Two-component response re	no	no	0.218	0.193	0.571	2e-18
Q9FFH0	386	Transcription activator G	no	no	0.176	0.155	0.55	2e-14
Q9LYP5	613	Putative two-component re	no	no	0.271	0.150	0.376	3e-14
Q6LA43	535	Two-component response re	no	no	0.327	0.207	0.362	4e-14
Q7Y0W3	341	Two-component response re	N/A	no	0.374	0.372	0.35	5e-14

>sp|Q9ZWJ9|ARR2_ARATH Two-component response regulator ARR2 OS=Arabidopsis thaliana GN=ARR2 PE=1 SV=1

 Score =  105 bits (262), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 54/117 (46%), Positives = 76/117 (64%), Gaps = 6/117 (5%)

Query: 103 NRDPMVTETEEQDQNGSFV-DSRSKSRRPDCTEEADSALRTDNSNEDPSARTLKRPRLVW 161
           +RD      E+ D N S V +   +S R    EE D     D  ++   + +LK+PR+VW
Sbjct: 167 DRDRQQQHREDADNNSSSVNEGNGRSSRKRKEEEVD-----DQGDDKEDSSSLKKPRVVW 221

Query: 162 TPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRMQGLS 218
           + +LH++FV  V  LG+  AVPK I+++MNV GLTRENVASHLQKYR+YL+R+ G+S
Sbjct: 222 SVELHQQFVAAVNQLGVDKAVPKKILEMMNVPGLTRENVASHLQKYRIYLRRLGGVS 278

Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Involved in the expression of nuclear genes for components of mitochondrial complex I. Promotes cytokinin-mediated leaf longevity. Involved in the ethylene signaling pathway in an ETR1-dependent manner and in the cytokinin signaling pathway.
Arabidopsis thaliana (taxid: 3702)

>sp|Q940D0|ARR1_ARATH Two-component response regulator ARR1 OS=Arabidopsis thaliana GN=ARR1 PE=1 SV=2

 Score =  103 bits (258), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 51/96 (53%), Positives = 71/96 (73%), Gaps = 7/96 (7%)

Query: 123 SRSKSRRPDCTEEADSALRTDNSNEDPSARTLKRPRLVWTPQLHKRFVDVVAHLGIKNAV 182
           S S+ R+ +  EE     + D+ +ED  A  LK+PR+VW+ +LH++FV  V  LG++ AV
Sbjct: 211 SSSRKRKDEEGEE-----QGDDKDED--ASNLKKPRVVWSVELHQQFVAAVNQLGVEKAV 263

Query: 183 PKTIMQLMNVEGLTRENVASHLQKYRLYLKRMQGLS 218
           PK I++LMNV GLTRENVASHLQKYR+YL+R+ G+S
Sbjct: 264 PKKILELMNVPGLTRENVASHLQKYRIYLRRLGGVS 299

Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins.

Arabidopsis thaliana (taxid: 3702)

>sp|P62598|ARR12_ARATH Two-component response regulator ARR12 OS=Arabidopsis thaliana GN=ARR12 PE=2 SV=2

 Score = 96.3 bits (238), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 56/126 (44%), Positives = 74/126 (58%), Gaps = 24/126 (19%)

Query: 155 KRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRM 214
           K+ R+VWT +LHK+FV  V  LG + A+PK I+ LMNVE LTRENVASHLQK+RLYLKR+
Sbjct: 194 KKQRVVWTVELHKKFVAAVNQLGYEKAMPKKILDLMNVEKLTRENVASHLQKFRLYLKRI 253

Query: 215 QGLSNDDPSSSDHQL----------FASTPVPPHNNGSGNSGHVGMAAY--GAPAGMMTA 262
            G++N     ++ +L          F   P+P           VG   Y  GAPA M + 
Sbjct: 254 SGVANQQAIMANSELHFMQMNGLDGFHHRPIP-----------VGSGQYHGGAPA-MRSF 301

Query: 263 PMYGMI 268
           P  G++
Sbjct: 302 PPNGIL 307

Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FGT7|ARR18_ARATH Two-component response regulator ARR18 OS=Arabidopsis thaliana GN=ARR18 PE=2 SV=2

 Score = 95.9 bits (237), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 40/62 (64%), Positives = 52/62 (83%)

Query: 153 TLKRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLK 212
           T K+PR+VW+ +LH++FV  V  LG+  AVPK I+ LM++EGLTRENVASHLQKYRLYLK
Sbjct: 191 TRKKPRVVWSQELHQKFVSAVQQLGLDKAVPKKILDLMSIEGLTRENVASHLQKYRLYLK 250

Query: 213 RM 214
           ++
Sbjct: 251 KI 252

Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins.

Arabidopsis thaliana (taxid: 3702)

>sp|O49397|ARR10_ARATH Two-component response regulator ARR10 OS=Arabidopsis thaliana GN=ARR10 PE=1 SV=1

 Score = 93.2 bits (230), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 41/71 (57%), Positives = 58/71 (81%), Gaps = 2/71 (2%)

Query: 144 NSNEDPSARTLKRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASH 203
           N N+DP+A+  K+PR++WT +LH +F+  V HLG++ AVPK I+ LMNV+ LTRENVASH
Sbjct: 173 NDNDDPTAQ--KKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASH 230

Query: 204 LQKYRLYLKRM 214
           LQK+R+ LK++
Sbjct: 231 LQKFRVALKKV 241

Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8L9Y3|ARR14_ARATH Two-component response regulator ARR14 OS=Arabidopsis thaliana GN=ARR14 PE=1 SV=2

 Score = 93.2 bits (230), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 44/77 (57%), Positives = 59/77 (76%), Gaps = 3/77 (3%)

Query: 155 KRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRM 214
           K+ R+VW+ +LH++FV+ V  LGI  AVPK I++LMNV GL+RENVASHLQK+RLYLKR+
Sbjct: 199 KKSRVVWSIELHQQFVNAVNKLGIDKAVPKRILELMNVPGLSRENVASHLQKFRLYLKRL 258

Query: 215 QG---LSNDDPSSSDHQ 228
            G    SND  S+  ++
Sbjct: 259 SGEASQSNDSESTKRYE 275

Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FFH0|GLK2_ARATH Transcription activator GLK2 OS=Arabidopsis thaliana GN=GLK2 PE=2 SV=1

 Score = 80.1 bits (196), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 33/60 (55%), Positives = 46/60 (76%)

Query: 155 KRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRM 214
           K+P++ WTP+LH++FV  V  LG+  AVP  I+++MNV+ LTR NVASHLQKYR + K +
Sbjct: 146 KKPKVDWTPELHRKFVQAVEQLGVDKAVPSRILEIMNVKSLTRHNVASHLQKYRSHRKHL 205

Transcriptional activator that functions with GLK1 to promote chloroplast development. Acts as an activator of nuclear photosynthetic genes involved in chlorophyll biosynthesis, light harvesting, and electron transport. Acts in a cell-autonomous manner to coordinate and maintain the photosynthetic apparatus within individual cells. May function in photosynthetic capacity optimization by integrating responses to variable environmental and endogenous cues.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LYP5|ARR21_ARATH Putative two-component response regulator ARR21 OS=Arabidopsis thaliana GN=ARR21 PE=2 SV=3

 Score = 79.3 bits (194), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 44/117 (37%), Positives = 68/117 (58%), Gaps = 25/117 (21%)

Query: 126 KSRRPDCTEEADS---------ALRTDNSNED--------PS------ARTLKRPRLVWT 162
           K++R +C+ ++DS          + TD S ++        PS      ++  K+ ++ WT
Sbjct: 169 KTKRKNCSFKSDSRTVNSTNGSCVSTDGSRKNRKRKPNGGPSDDGESMSQPAKKKKIQWT 228

Query: 163 PQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRM--QGL 217
             LH  F+  + H+G+  AVPK I+  M+V  LTRENVASHLQKYR++L+R+  QGL
Sbjct: 229 DSLHDLFLQAIRHIGLDKAVPKKILAFMSVPYLTRENVASHLQKYRIFLRRVAEQGL 285

Putative transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6LA43|APRR2_ARATH Two-component response regulator-like APRR2 OS=Arabidopsis thaliana GN=APRR2 PE=2 SV=2

 Score = 79.0 bits (193), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 41/113 (36%), Positives = 63/113 (55%), Gaps = 2/113 (1%)

Query: 109 TETEEQDQNGSFVDSRSKSRRPDCTEEADSALRTDNSNEDPSARTLKRPRLVWTPQLHKR 168
           +E EE+ + G  +  ++ S      E+    +   +  ++ S     R ++ WTP+LHK+
Sbjct: 249 SEKEEEGETGDLISEKTDSVDIHKKEDETKPINKSSGIKNVSGNKTSRKKVDWTPELHKK 308

Query: 169 FVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRMQGLSNDD 221
           FV  V  LG+  A+P  I++LM V  LTR NVASHLQK+R + K +  L  DD
Sbjct: 309 FVQAVEQLGVDQAIPSRILELMKVGTLTRHNVASHLQKFRQHRKNI--LPKDD 359

Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'.

Arabidopsis thaliana (taxid: 3702)

>sp|Q7Y0W3|EHD1_ORYSI Two-component response regulator EHD1 OS=Oryza sativa subsp. indica PE=2 SV=1

 Score = 79.0 bits (193), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 49/140 (35%), Positives = 70/140 (50%), Gaps = 13/140 (9%)

Query: 147 EDPSARTLKRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQK 206
           E    R L + RL WT QLH++F+  V HLG   AVPK I+ +M V+ LTRE VASHLQK
Sbjct: 189 EITDIRDLGKSRLTWTTQLHRQFIAAVNHLGEDKAVPKKILGIMKVKHLTREQVASHLQK 248

Query: 207 YRLYLKRMQGLSNDDPSSSDH-QLFASTPV------PPHNNGSGNSGHVGMAAYGAPAGM 259
           YR+ LK+        P++S H    +ST +      P  +      G + +  Y  P   
Sbjct: 249 YRMQLKK------SIPTTSKHGATLSSTALDKTQDHPSRSQYFNQDGCMEIMDYSLPRDD 302

Query: 260 MTAPMYGMINHQGFHHGHGF 279
           +++    M+     +   GF
Sbjct: 303 LSSGSECMLEELNDYSSEGF 322

Transcriptional activator that acts as floral inducer to promote short-day (SD) flowering pathway. Activates Hd3a and other FT-like genes independently from Hd1. May also activate MADS-box transcription factors involved in flowering regulation.

Oryza sativa subsp. indica (taxid: 39946)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	339
225434873	311	PREDICTED: uncharacterized protein LOC10	0.820	0.893	0.610	3e-87
449455086	336	PREDICTED: uncharacterized protein LOC10	0.840	0.848	0.557	6e-87
147860003	362	hypothetical protein VITISV_006762 [Viti	0.820	0.767	0.610	8e-87
255559022	316	DNA binding protein, putative [Ricinus c	0.766	0.822	0.627	9e-81
297746038	395	unnamed protein product [Vitis vinifera]	0.749	0.643	0.574	3e-77
224106431	210	predicted protein [Populus trichocarpa]	0.604	0.976	0.614	2e-69
356538978	323	PREDICTED: putative two-component respon	0.646	0.678	0.65	2e-68
15232597	323	protein phytoclock 1 [Arabidopsis thalia	0.861	0.904	0.492	3e-68
356542300	306	PREDICTED: putative two-component respon	0.672	0.745	0.621	4e-68
222424975	323	AT3G46640 [Arabidopsis thaliana]	0.861	0.904	0.490	1e-67

>gi|225434873|ref|XP_002283159.1| PREDICTED: uncharacterized protein LOC100253567 [Vitis vinifera]

 Score =  328 bits (840), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 204/334 (61%), Positives = 227/334 (67%), Gaps = 56/334 (16%)

Query: 1   MGEEVRMTEYEVNDKGDYNGDDERIPEWEMGLPNGTDLTPLSQSLIPPELASAFSILPIP 60
           MGEEVRM++    D GD    DER+ EWE GLP   DLTPLSQ LIPPELASAFSI P P
Sbjct: 1   MGEEVRMSDINGGDGGD----DERVLEWEAGLPAADDLTPLSQPLIPPELASAFSITPEP 56

Query: 61  CRTHLDVNRASQTTLSSIRGSHAHSLSSTDNNNSNNLKTLTE--NRDPMVTETEEQ-DQN 117
           CRT L+VNRASQ+T S+IRG  +HS SS      NN K+  E  NR+P V E EE  D++
Sbjct: 57  CRTLLEVNRASQSTFSTIRG-QSHSFSS------NNFKSFNEERNREPAVVEPEETGDRD 109

Query: 118 GSFVDSRSKSRRPDCTEEADSALRTDNSNEDPSARTLKRPRLVWTPQLHKRFVDVVAHLG 177
           GS  +SR K R+ DC EEADSA+RT+NSN+DPSARTLKRPRLVWTPQLHKRFVDVV HLG
Sbjct: 110 GSGSESR-KVRKVDCAEEADSAMRTENSNDDPSARTLKRPRLVWTPQLHKRFVDVVGHLG 168

Query: 178 IKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRMQGLSNDDPSSSDHQLFASTPVPP 237
           IKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRMQGLSN+ PSSSDH LFASTPVP 
Sbjct: 169 IKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRMQGLSNEGPSSSDH-LFASTPVPQ 227

Query: 238 ---------HNNGSGNSGHVGMAA---YGAPAGMMTAPMYGMINHQGFHHGHGFDPSMYN 285
                    H NG GN GH+ +     YG    MM  P+ G+       HGHG       
Sbjct: 228 SLHESGGSVHGNGHGN-GHMSVPIPMPYG--QTMMHMPVLGV------SHGHG------- 271

Query: 286 MNMNMGMGMNMNMGMNNM-------MHQQRDWSV 312
                 MGM+   G +         M QQRDWSV
Sbjct: 272 -----QMGMSGPGGYHGYESHHPYNMLQQRDWSV 300

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449455086|ref|XP_004145284.1| PREDICTED: uncharacterized protein LOC101216423 [Cucumis sativus] gi|449470904|ref|XP_004153145.1| PREDICTED: uncharacterized protein LOC101205712 [Cucumis sativus] gi|449525506|ref|XP_004169758.1| PREDICTED: uncharacterized LOC101205712 [Cucumis sativus]

 Score =  327 bits (837), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 194/348 (55%), Positives = 223/348 (64%), Gaps = 63/348 (18%)

Query: 1   MGEEVRMTEYE----VNDKGDYNGDDERIPEWEMGLPNGTDLTPLSQSLIPPELASAFSI 56
           MGEEV+M EYE    V  + +    +ER+ EWE GLP+  DLTPLSQ+LIPPELASAFSI
Sbjct: 1   MGEEVKMAEYESGGGVGGEDESCAHEERVFEWETGLPDADDLTPLSQTLIPPELASAFSI 60

Query: 57  LPIPCRTHLDVNRASQTTLSSIRGSHAHSLSSTDNNNSNNLKTLTENR----DPMVTETE 112
              PCRT +DVNRASQ TLS++RG  A + SS      NN K+  ++R    D MV E +
Sbjct: 61  STGPCRTLMDVNRASQNTLSNLRGFQAQAFSS------NNFKSFNDDRTQDHDAMVVEGD 114

Query: 113 EQDQNGSFVDSRSKSRRPDCTEEADSALRTDNSNEDPSARTLKRPRLVWTPQLHKRFVDV 172
           E  +  +  DSR K R+ DC EEADSALRTDNS +DPSARTLKRPRLVWTPQLHKRFVDV
Sbjct: 115 EATERDAGSDSR-KLRKVDCAEEADSALRTDNSMDDPSARTLKRPRLVWTPQLHKRFVDV 173

Query: 173 VAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRMQGLSNDDPSSSDHQLFAS 232
           VAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRMQG SN+ PSS D ++FAS
Sbjct: 174 VAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRMQGSSNEGPSSPD-RIFAS 232

Query: 233 TPVPPHNNGSGNSGH------------------------VGMAAYGAPAGMMTAPMYGMI 268
           TPVPP  + S NSG                         +GMAA G     M  P    +
Sbjct: 233 TPVPPTLHESTNSGQANGNGHLPVPTPMPYGPPMMPMPVLGMAASGHAHSYMGMP----V 288

Query: 269 NHQGFHHGH-GFDPSMYNMNMNMGMGMNMNMGMNNMMHQQRDWSVNKH 315
            H G   G+ GF+   +                 NMMH QRDWS NK+
Sbjct: 289 AHPGSAQGYPGFETHPF-----------------NMMH-QRDWSGNKY 318

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147860003|emb|CAN81044.1| hypothetical protein VITISV_006762 [Vitis vinifera]

 Score =  326 bits (836), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 204/334 (61%), Positives = 227/334 (67%), Gaps = 56/334 (16%)

Query: 1   MGEEVRMTEYEVNDKGDYNGDDERIPEWEMGLPNGTDLTPLSQSLIPPELASAFSILPIP 60
           MGEEVRM++    D GD    DER+ EWE GLP   DLTPLSQ LIPPELASAFSI P P
Sbjct: 52  MGEEVRMSDINGGDGGD----DERVLEWEAGLPAADDLTPLSQPLIPPELASAFSITPEP 107

Query: 61  CRTHLDVNRASQTTLSSIRGSHAHSLSSTDNNNSNNLKTLTE--NRDPMVTETEEQ-DQN 117
           CRT L+VNRASQ+T S+IRG  +HS SS      NN K+  E  NR+P V E EE  D++
Sbjct: 108 CRTLLEVNRASQSTFSTIRG-QSHSFSS------NNFKSFNEERNREPAVVEPEETGDRD 160

Query: 118 GSFVDSRSKSRRPDCTEEADSALRTDNSNEDPSARTLKRPRLVWTPQLHKRFVDVVAHLG 177
           GS  +SR K R+ DC EEADSA+RT+NSN+DPSARTLKRPRLVWTPQLHKRFVDVV HLG
Sbjct: 161 GSGSESR-KVRKVDCAEEADSAMRTENSNDDPSARTLKRPRLVWTPQLHKRFVDVVGHLG 219

Query: 178 IKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRMQGLSNDDPSSSDHQLFASTPVPP 237
           IKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRMQGLSN+ PSSSDH LFASTPVP 
Sbjct: 220 IKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRMQGLSNEGPSSSDH-LFASTPVPQ 278

Query: 238 ---------HNNGSGNSGHVGMAA---YGAPAGMMTAPMYGMINHQGFHHGHGFDPSMYN 285
                    H NG GN GH+ +     YG    MM  P+ G+       HGHG       
Sbjct: 279 SLHESGGSVHGNGHGN-GHMSVPIPMPYG--QTMMHMPVLGV------SHGHG------- 322

Query: 286 MNMNMGMGMNMNMGMNNM-------MHQQRDWSV 312
                 MGM+   G +         M QQRDWSV
Sbjct: 323 -----QMGMSGPGGYHGYESHHPYNMLQQRDWSV 351

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255559022|ref|XP_002520534.1| DNA binding protein, putative [Ricinus communis] gi|223540376|gb|EEF41947.1| DNA binding protein, putative [Ricinus communis]

 Score =  306 bits (784), Expect = 9e-81,   Method: Compositional matrix adjust.
 Identities = 180/287 (62%), Positives = 204/287 (71%), Gaps = 27/287 (9%)

Query: 1   MGEEVRMTEYEVNDKGDYNGDDE-RIPEWEMGLPNGTDLTPLSQSLIPPELASAFSILPI 59
           MGEEV+M+EYE N   + NGDDE R+ +WE GLP   DLTPLSQ LIPPELASAFSI P 
Sbjct: 1   MGEEVKMSEYESNGVINNNGDDEERVRDWEFGLPTADDLTPLSQPLIPPELASAFSISPE 60

Query: 60  PCRTHLDVNRASQTTLSSIRGSHAHSLSSTDNNNSNNLKTLTENRDPMV-TETEE--QDQ 116
           P R+ +DVNR SQ TL S+R       S+T   +SN  K+   N DP   T  EE   + 
Sbjct: 61  PHRSIIDVNRESQNTLLSLR-------SATGAFSSNKFKSYNNNDDPTAETAVEEINNNT 113

Query: 117 NGSFVDSRSKSRRPDCTEEADSALRTDN-SNEDP-SARTLKRPRLVWTPQLHKRFVDVVA 174
           N +    + K RR D  EEADSALRT+N + EDP +ARTLKRPRLVWTPQLHKRFVDVVA
Sbjct: 114 NNNNDTDQEKLRRIDSGEEADSALRTENLTGEDPATARTLKRPRLVWTPQLHKRFVDVVA 173

Query: 175 HLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRMQGLSNDDPSSSDHQLFASTP 234
           +LGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRMQGLS++ PS+SD+QLFASTP
Sbjct: 174 YLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRMQGLSSEGPSASDNQLFASTP 233

Query: 235 VPPHNNGSGNS--------GHVGMAA-----YGAPAG-MMTAPMYGM 267
           VP     +GNS        GH+GMA      Y    G MMT PMYGM
Sbjct: 234 VPQSLQDNGNSNGNAGEGNGHLGMAVSVPVPYHPGVGPMMTMPMYGM 280

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297746038|emb|CBI16094.3| unnamed protein product [Vitis vinifera]

 Score =  295 bits (754), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 190/331 (57%), Positives = 209/331 (63%), Gaps = 77/331 (23%)

Query: 1   MGEEVRMTEYEVNDKGDYNGDDERIPEWEMGLPNGTDLTPLSQSLIPPELASAFSILPIP 60
           MGEEVRM++    D GD    DER+ EWE GLP   DLTPLSQ LIPPELASAFSI P P
Sbjct: 112 MGEEVRMSDINGGDGGD----DERVLEWEAGLPAADDLTPLSQPLIPPELASAFSITPEP 167

Query: 61  CRTHLDVNRASQTTLSSIRGSHAHSLSSTDNNNSNNLKTLTENRDPMVTETEEQDQNGSF 120
           CRT L+VNRASQ+T S+IRG  +HS SS      NN K+  E R+               
Sbjct: 168 CRTLLEVNRASQSTFSTIRG-QSHSFSS------NNFKSFNEERN--------------- 205

Query: 121 VDSRSKSRRPDCTEEADSALRTDNSNEDPSARTLKRPRLVWTPQLHKRFVDVVAHLGIKN 180
                  R P    EADSA+RT+NSN+DPSARTLKRPRLVWTPQLHKRFVDVV HLGIKN
Sbjct: 206 -------REP---AEADSAMRTENSNDDPSARTLKRPRLVWTPQLHKRFVDVVGHLGIKN 255

Query: 181 AVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRMQGLSNDDPSSSDHQLFASTPVPP--- 237
           AVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRMQGLSN+ PSSSDH LFASTPVP    
Sbjct: 256 AVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRMQGLSNEGPSSSDH-LFASTPVPQSLH 314

Query: 238 ------HNNGSGNSGHVGMAA---YGAPAGMMTAPMYGMINHQGFHHGHGFDPSMYNMNM 288
                 H NG GN GH+ +     YG    MM  P+ G+       HGHG          
Sbjct: 315 ESGGSVHGNGHGN-GHMSVPIPMPYG--QTMMHMPVLGV------SHGHG---------- 355

Query: 289 NMGMGMNMNMGMNNM-------MHQQRDWSV 312
              MGM+   G +         M QQRDWSV
Sbjct: 356 --QMGMSGPGGYHGYESHHPYNMLQQRDWSV 384

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224106431|ref|XP_002314163.1| predicted protein [Populus trichocarpa] gi|222850571|gb|EEE88118.1| predicted protein [Populus trichocarpa]

 Score =  268 bits (686), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 148/241 (61%), Positives = 176/241 (73%), Gaps = 36/241 (14%)

Query: 1   MGEEVRMTEYEVND-KGDYNGDDERIPEWEMGLPNGTDLTPLSQSLIPPELASAFSILPI 59
           MGEEV+M+EYE+ND + + NGDDER+  WE+GLP   DLTPLSQ+LIPPELASAFSI P 
Sbjct: 1   MGEEVKMSEYEINDGEENINGDDERVAVWEIGLPTPDDLTPLSQTLIPPELASAFSIFPE 60

Query: 60  PCRTHLDVNRASQTTLSSIRGSHAHSLSSTDNNNSNNLKTLTENRDPMVTETEEQ----D 115
           P RT LDVNRA QTTLS++RG   ++LSS  NN  +  +T  +  DP+V + + +    D
Sbjct: 61  PHRTPLDVNRACQTTLSNLRG-QLNALSS--NNFKSFNETTGQTHDPIVVDLDNKTGAVD 117

Query: 116 QNGSFVDSRSKSRRPDCTEEADSALRTDNSNEDPSARTLKRPRLVWTPQLHKRFVDVVAH 175
           ++GS  ++R                           +TLKRPRLVWTPQLHKRFVDVV H
Sbjct: 118 RDGSGSEAR---------------------------KTLKRPRLVWTPQLHKRFVDVVGH 150

Query: 176 LGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRMQGLSNDDPSSSDHQLFASTPV 235
           LGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRMQGLS++ PS+SD QLFASTP+
Sbjct: 151 LGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRMQGLSSEGPSASD-QLFASTPL 209

Query: 236 P 236
           P
Sbjct: 210 P 210

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356538978|ref|XP_003537977.1| PREDICTED: putative two-component response regulator ARR21-like [Glycine max]

 Score =  265 bits (677), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 156/240 (65%), Positives = 176/240 (73%), Gaps = 21/240 (8%)

Query: 1   MGEEVRMTEYEVNDKGDYNGDDERIPEWEMGLPNGTDLTPLSQSLIPPELASAFSILPIP 60
           MGEEV+ +EY          D+ER+ EWE GLP   DLTPLSQ LIPPELASAFSILP P
Sbjct: 1   MGEEVKTSEY----------DEERVMEWEAGLPTANDLTPLSQPLIPPELASAFSILPEP 50

Query: 61  CRTHLDVNRASQTTLSSIRGS--HAHSLSSTDNNNSNNLKTLTENRDPMVTETEEQDQNG 118
            RT LDVNRAS+ TLS++RG     H   S+ NNN N              E ++ D++G
Sbjct: 51  HRTLLDVNRASRNTLSTLRGGGGSVHQAFSSSNNNHNYDGDGDGGV--EEEEDDDDDRDG 108

Query: 119 SFVDSRSKSRRPDC--TEEADSALRTDNSNEDPSARTLKRPRLVWTPQLHKRFVDVVAHL 176
           S  DSR K R+ DC   EEADSA++T+ S E  +   +KRPRLVWTPQLHKRFVDVVAHL
Sbjct: 109 SGPDSR-KQRKIDCGAAEEADSAVQTETSAERTA---VKRPRLVWTPQLHKRFVDVVAHL 164

Query: 177 GIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRMQGLSNDDPSSSDHQLFASTPVP 236
           GIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRMQGLSN+ PS+SD QLFASTPVP
Sbjct: 165 GIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRMQGLSNEGPSASD-QLFASTPVP 223

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15232597|ref|NP_190248.1| protein phytoclock 1 [Arabidopsis thaliana] gi|79314533|ref|NP_001030823.1| protein phytoclock 1 [Arabidopsis thaliana] gi|6523067|emb|CAB62334.1| putative protein [Arabidopsis thaliana] gi|30102630|gb|AAP21233.1| At3g46640 [Arabidopsis thaliana] gi|71067050|dbj|BAE16277.1| PHYTOCLOCK 1 [Arabidopsis thaliana] gi|110743672|dbj|BAE99673.1| hypothetical protein [Arabidopsis thaliana] gi|332644665|gb|AEE78186.1| protein phytoclock 1 [Arabidopsis thaliana] gi|332644666|gb|AEE78187.1| protein phytoclock 1 [Arabidopsis thaliana]

 Score =  265 bits (676), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 173/351 (49%), Positives = 206/351 (58%), Gaps = 59/351 (16%)

Query: 1   MGEEVRMTEYEVNDKGDYNGDDERIPEWEMGLPNGTDLTPLSQSLIPPELASAFSILPIP 60
           MGEEV+M++Y+V+      GD +R+ EWEMGLP+  DL  LS SLIPP LA AFSI P  
Sbjct: 1   MGEEVQMSDYDVS------GDGDRVSEWEMGLPSDEDLASLSYSLIPPNLAMAFSITPER 54

Query: 61  CRTHLDVNRASQTTLSSIRGSHAHSLSSTDNNNSNNLKTLTENRDPMVTETEEQDQNGSF 120
            RT  DVNRAS+TTLSS+RG  +   +S+ NNN                  EE+D+ GS 
Sbjct: 55  SRTIQDVNRASETTLSSLRGGSSGPNTSSSNNN-----------------VEEEDRVGSS 97

Query: 121 V-DSRSKSRRPD----------CTEEADSALRTDNSNEDPSARTLKRPRLVWTPQLHKRF 169
              S SK ++              + A +A   D+  ED S +TLKRPRLVWTPQLHKRF
Sbjct: 98  SPGSDSKKQKTSNGDGDDGGGVDPDSAMAAEEGDSGTEDLSGKTLKRPRLVWTPQLHKRF 157

Query: 170 VDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRMQGLSNDDPSSSDHQL 229
           VDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRMQGL+N+ PS+SD +L
Sbjct: 158 VDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRMQGLTNEGPSASD-KL 216

Query: 230 FASTPVPPHNNGSGNSGHVGM--------AAYGAPAGMMTAPMYG-MINHQGFHH-GHGF 279
           F+STPVPP +      G             AYG    MM  P+Y   +  QG+HH  H  
Sbjct: 217 FSSTPVPPQSFQDIGGGGGSSGNVGVPIPGAYGTQQ-MMQMPVYAHHMGMQGYHHQNHNH 275

Query: 280 DPSMYNMNMNMGMGMNMNMGMNNMMHQQRDWSVNKHGYGHGHGQGSVVSYP 330
           DP   N   + G G N     N  M QQ  +             GS+ SYP
Sbjct: 276 DPYHQNHRHHHGAGGNGAFESNPYMMQQNKF-------------GSMASYP 313

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356542300|ref|XP_003539607.1| PREDICTED: putative two-component response regulator ARR21-like isoform 1 [Glycine max] gi|356542302|ref|XP_003539608.1| PREDICTED: putative two-component response regulator ARR21-like isoform 2 [Glycine max]

 Score =  264 bits (675), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 159/256 (62%), Positives = 182/256 (71%), Gaps = 28/256 (10%)

Query: 1   MGEEVRMTEYEVNDKGDYNGDDERIPEWEMGLPNGTDLTPLSQSLIPPELASAFSILPIP 60
           MGEEV+ +EY          D+ER+ EWEMGLP   DLTPLSQ LIPPELASAFSI P P
Sbjct: 1   MGEEVKTSEY----------DEERVMEWEMGLPTANDLTPLSQPLIPPELASAFSISPEP 50

Query: 61  CRTHLDVNRASQTTLSSIRGSHAHSLSSTDNNNSNNLKTLTENRDPMVTETEEQDQNGSF 120
            RT L+VNRAS+ TLS+IRG       +  +NN+NN     +       E ++ D++GS 
Sbjct: 51  HRTLLEVNRASRNTLSTIRGG-GSVHQAFSSNNNNNHHYDGDGDGGDEEEYDDADRDGSG 109

Query: 121 VDSRSKSRRPDC--TEEADSALRTDNSNEDPSARTLKRPRLVWTPQLHKRFVDVVAHLGI 178
            DSR K R+ DC   EEADSA+RT+ S E  +   +KRPRLVWTPQLHKRFVDVVAHLGI
Sbjct: 110 SDSR-KQRKIDCGVAEEADSAVRTETSAERTA---VKRPRLVWTPQLHKRFVDVVAHLGI 165

Query: 179 KNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRMQGLSNDDPSSSDHQLFASTPVP-- 236
           KNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRMQGLSN+ PSSSD QLFAST VP  
Sbjct: 166 KNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRMQGLSNEGPSSSD-QLFASTAVPQS 224

Query: 237 --------PHNNGSGN 244
                    H+NG G+
Sbjct: 225 LHDSAPPSAHSNGHGH 240

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|222424975|dbj|BAH20438.1| AT3G46640 [Arabidopsis thaliana]

 Score =  263 bits (671), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 172/351 (49%), Positives = 206/351 (58%), Gaps = 59/351 (16%)

Query: 1   MGEEVRMTEYEVNDKGDYNGDDERIPEWEMGLPNGTDLTPLSQSLIPPELASAFSILPIP 60
           MGEEV+M++Y+V+      GD +R+ EWEMGLP+  DL  LS SLIPP LA AFSI P  
Sbjct: 1   MGEEVQMSDYDVS------GDGDRVSEWEMGLPSDEDLASLSYSLIPPNLAMAFSITPER 54

Query: 61  CRTHLDVNRASQTTLSSIRGSHAHSLSSTDNNNSNNLKTLTENRDPMVTETEEQDQNGSF 120
            RT  DVNRAS+TTLSS+RG  +   +S+ NNN                  EE+D+ GS 
Sbjct: 55  SRTIQDVNRASETTLSSLRGGSSGPNTSSSNNN-----------------VEEEDRVGSS 97

Query: 121 V-DSRSKSRRPD----------CTEEADSALRTDNSNEDPSARTLKRPRLVWTPQLHKRF 169
              S SK ++              + A +A   D+  ED S +TLKRPRLVWTPQLHKRF
Sbjct: 98  SPGSDSKKQKTSNGDGDDGGGVDPDSAMAAEEGDSGTEDLSGKTLKRPRLVWTPQLHKRF 157

Query: 170 VDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRMQGLSNDDPSSSDHQL 229
           VDVVAHLGIKNAVPKTIMQ+MNVEGLTRENVASHLQKYRLYLKRMQGL+N+ PS+SD +L
Sbjct: 158 VDVVAHLGIKNAVPKTIMQVMNVEGLTRENVASHLQKYRLYLKRMQGLTNEGPSASD-KL 216

Query: 230 FASTPVPPHNNGSGNSGHVGM--------AAYGAPAGMMTAPMYG-MINHQGFHH-GHGF 279
           F+STPVPP +      G             AYG    MM  P+Y   +  QG+HH  H  
Sbjct: 217 FSSTPVPPQSFQDIGGGGGSSGNVGVPIPGAYGTQQ-MMQMPVYAHHMGMQGYHHQNHNR 275

Query: 280 DPSMYNMNMNMGMGMNMNMGMNNMMHQQRDWSVNKHGYGHGHGQGSVVSYP 330
           DP   N   + G G N     N  M QQ  +             GS+ SYP
Sbjct: 276 DPYHQNHRHHHGAGGNGAFESNPYMMQQNKF-------------GSMASYP 313

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	339
TAIR|locus:2148348	298	BOA "AT5G59570" [Arabidopsis t	0.637	0.724	0.576	1.6e-56
TAIR|locus:2103247	335	AT3G10760 "AT3G10760" [Arabido	0.289	0.292	0.754	8.4e-41
TAIR|locus:2175364	266	AT5G05090 "AT5G05090" [Arabido	0.262	0.334	0.771	5.1e-39
TAIR|locus:2058445	248	MYBC1 "AT2G40970" [Arabidopsis	0.241	0.330	0.771	4.4e-36
TAIR|locus:2130095	664	RR2 "response regulator 2" [Ar	0.324	0.165	0.465	2.5e-21
TAIR|locus:2093668	690	RR1 "response regulator 1" [Ar	0.289	0.142	0.532	9.3e-21
TAIR|locus:2040194	596	RR12 "response regulator 12" [	0.315	0.179	0.469	1.7e-19
TAIR|locus:2116587	552	RR10 "response regulator 10" [	0.318	0.195	0.441	2.4e-19
TAIR|locus:2065398	382	RR14 "response regulator 14" [	0.333	0.295	0.435	1.4e-18
UNIPROTKB|Q5Z5I4	455	GLK1 "Probable transcription f	0.342	0.254	0.352	7.4e-16

TAIR|locus:2148348 BOA "AT5G59570" [Arabidopsis thaliana (taxid:3702)]

 Score = 582 (209.9 bits), Expect = 1.6e-56, P = 1.6e-56
 Identities = 136/236 (57%), Positives = 156/236 (66%)

Query:     1 MGEEVRMTEYEVNDKGDYNGDDE-RIPEWEMGLPNGTDLTPLSQSLIPPELASAFSILPI 59
             MG+EV +++Y  +D  D  G DE RIPEWE+GLPNG DLTPLSQ L+P  LA AFS++P 
Sbjct:     1 MGKEVMVSDYGDDDGEDAGGGDEYRIPEWEIGLPNGDDLTPLSQYLVPSILALAFSMIPE 60

Query:    60 PCRTHLDVNRASQTTLSSIRGSHAHXXXXXXXXXXXXXXXXXXXRDPMVTETEEQDQNGS 119
               RT  DVNRASQ TLSS+R S                       + +V   E     GS
Sbjct:    61 RSRTIHDVNRASQITLSSLRSS----------------TNASSVMEEVVDRVESSVP-GS 103

Query:   120 FVDSRSKSRRPDCTEEADS-ALRTDNSNEDPSARTLKRPRLVWTPQLHKRFVDVVAHLGI 178
                 + KS   +     DS A   D+  ED S +T KRPRLVWTPQLHKRFVDVVAHLGI
Sbjct:   104 DPKKQKKSDGGEAAAVEDSTAEEGDSGPEDASGKTSKRPRLVWTPQLHKRFVDVVAHLGI 163

Query:   179 KNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRMQGLSND-DPSSSDHQLFAST 233
             KNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKR+QGL+ + DP SS  QLF+ST
Sbjct:   164 KNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRIQGLTTEEDPYSSSDQLFSST 219

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0007623 "circadian rhythm" evidence=IMP

GO:0009909 "regulation of flower development" evidence=IMP

TAIR|locus:2103247 AT3G10760 "AT3G10760" [Arabidopsis thaliana (taxid:3702)]

 Score = 362 (132.5 bits), Expect = 8.4e-41, Sum P(2) = 8.4e-41
 Identities = 77/102 (75%), Positives = 85/102 (83%)

Query:   136 ADSA-LRTDNSNEDPSARTLKRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEG 194
             ADSA L +  +  D  ARTLKRPRLVWTPQLHKRFVD VAHLGIKNAVPKTIMQLM+V+G
Sbjct:    84 ADSADLGSGGAAGDEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDG 143

Query:   195 LTRENVASHLQKYRLYLKRMQGLSNDDPSSSD---HQLFAST 233
             LTRENVASHLQKYRLYLKRMQGLS+   + SD    +LFAS+
Sbjct:   144 LTRENVASHLQKYRLYLKRMQGLSSGGGAGSDPATDRLFASS 185

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2175364 AT5G05090 "AT5G05090" [Arabidopsis thaliana (taxid:3702)]

 Score = 346 (126.9 bits), Expect = 5.1e-39, Sum P(2) = 5.1e-39
 Identities = 71/92 (77%), Positives = 79/92 (85%)

Query:   143 DNSNEDPSARTLKRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVAS 202
             D++ ++P ARTLKRPRLVWTPQLHKRFVD VAHLGIKNAVPKTIMQLM+V+GLTRENVAS
Sbjct:    69 DSTGDEP-ARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVAS 127

Query:   203 HLQKYRLYLKRMQ-GLSNDDPSSSDHQLFAST 233
             HLQKYRLYLKRM+ G        SDH LFAS+
Sbjct:   128 HLQKYRLYLKRMKSGGGGGGSGDSDH-LFASS 158

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2058445 MYBC1 "AT2G40970" [Arabidopsis thaliana (taxid:3702)]

 Score = 326 (119.8 bits), Expect = 4.4e-36, Sum P(2) = 4.4e-36
 Identities = 64/83 (77%), Positives = 71/83 (85%)

Query:   151 ARTLKRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLY 210
             ARTLKRPRLVWTPQLHKRFVD V HLGIKNAVPKTIMQLM+VEGLTRENVASHLQKYRLY
Sbjct:   100 ARTLKRPRLVWTPQLHKRFVDAVGHLGIKNAVPKTIMQLMSVEGLTRENVASHLQKYRLY 159

Query:   211 LKRMQGLSNDDPSSSDHQLFAST 233
             L+RMQG  N +  +  H + + +
Sbjct:   160 LRRMQG-GNGNGITGGHVIVSDS 181

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009409 "response to cold" evidence=IMP

TAIR|locus:2130095 RR2 "response regulator 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 259 (96.2 bits), Expect = 2.5e-21, P = 2.5e-21
 Identities = 54/116 (46%), Positives = 75/116 (64%)

Query:   104 RDPMVTETEEQDQNGSFV-DSRSKSRRPDCTEEADSALRTDNSNEDPSARTLKRPRLVWT 162
             RD      E+ D N S V +   +S R    EE D     D  ++   + +LK+PR+VW+
Sbjct:   168 RDRQQQHREDADNNSSSVNEGNGRSSRKRKEEEVD-----DQGDDKEDSSSLKKPRVVWS 222

Query:   163 PQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRMQGLS 218
              +LH++FV  V  LG+  AVPK I+++MNV GLTRENVASHLQKYR+YL+R+ G+S
Sbjct:   223 VELHQQFVAAVNQLGVDKAVPKKILEMMNVPGLTRENVASHLQKYRIYLRRLGGVS 278

GO:0000156 "phosphorelay response regulator activity" evidence=IEA;ISS

GO:0000160 "phosphorelay signal transduction system" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009736 "cytokinin mediated signaling pathway" evidence=RCA;TAS

GO:0009723 "response to ethylene stimulus" evidence=IMP

GO:0009735 "response to cytokinin stimulus" evidence=IEP;IGI

GO:0010150 "leaf senescence" evidence=IMP

GO:0009873 "ethylene mediated signaling pathway" evidence=IMP

GO:0010119 "regulation of stomatal movement" evidence=IMP

GO:0007623 "circadian rhythm" evidence=RCA

GO:0010029 "regulation of seed germination" evidence=RCA

GO:0031537 "regulation of anthocyanin metabolic process" evidence=RCA

GO:0048831 "regulation of shoot system development" evidence=RCA

TAIR|locus:2093668 RR1 "response regulator 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 254 (94.5 bits), Expect = 9.3e-21, P = 9.3e-21
 Identities = 58/109 (53%), Positives = 77/109 (70%)

Query:   115 DQNGSFVDS----RSKSR-RPDCTEEADSALRTDNSNEDPSARTLKRPRLVWTPQLHKRF 169
             D N S V+     RS SR R D  EE +   + D+ +ED S   LK+PR+VW+ +LH++F
Sbjct:   197 DDNSSSVNEGNNWRSSSRKRKD--EEGEE--QGDDKDEDAS--NLKKPRVVWSVELHQQF 250

Query:   170 VDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRMQGLS 218
             V  V  LG++ AVPK I++LMNV GLTRENVASHLQKYR+YL+R+ G+S
Sbjct:   251 VAAVNQLGVEKAVPKKILELMNVPGLTRENVASHLQKYRIYLRRLGGVS 299

GO:0000156 "phosphorelay response regulator activity" evidence=IEA;ISS

GO:0000160 "phosphorelay signal transduction system" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

GO:0009736 "cytokinin mediated signaling pathway" evidence=IGI;RCA;TAS

GO:0009735 "response to cytokinin stimulus" evidence=IGI;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0010380 "regulation of chlorophyll biosynthetic process" evidence=IGI

GO:0031537 "regulation of anthocyanin metabolic process" evidence=IGI;RCA

GO:0048367 "shoot system development" evidence=IGI

GO:0080022 "primary root development" evidence=IGI

GO:0006487 "protein N-linked glycosylation" evidence=RCA

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

GO:0010029 "regulation of seed germination" evidence=RCA

GO:0010043 "response to zinc ion" evidence=RCA

GO:0016558 "protein import into peroxisome matrix" evidence=RCA

GO:0048831 "regulation of shoot system development" evidence=RCA

TAIR|locus:2040194 RR12 "response regulator 12" [Arabidopsis thaliana (taxid:3702)]

 Score = 241 (89.9 bits), Expect = 1.7e-19, P = 1.7e-19
 Identities = 54/115 (46%), Positives = 74/115 (64%)

Query:   115 DQNGSFVDSRSKSRRPDCTEEADSALRTDNSNEDPSARTLKRPRLVWTPQLHKRFVDVVA 174
             DQN    + +   +R D   E +   R DN  +D  A+  K+ R+VWT +LHK+FV  V 
Sbjct:   162 DQN----NGKGNRKRKDQYNEDEDEDRDDN--DDSCAQ--KKQRVVWTVELHKKFVAAVN 213

Query:   175 HLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRMQGLSNDDPSSSDHQL 229
              LG + A+PK I+ LMNVE LTRENVASHLQK+RLYLKR+ G++N     ++ +L
Sbjct:   214 QLGYEKAMPKKILDLMNVEKLTRENVASHLQKFRLYLKRISGVANQQAIMANSEL 268

GO:0000156 "phosphorelay response regulator activity" evidence=IEA;ISS

GO:0000160 "phosphorelay signal transduction system" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009736 "cytokinin mediated signaling pathway" evidence=IGI;TAS

GO:0009735 "response to cytokinin stimulus" evidence=IGI

GO:0010380 "regulation of chlorophyll biosynthetic process" evidence=IGI

GO:0031537 "regulation of anthocyanin metabolic process" evidence=IGI

GO:0048367 "shoot system development" evidence=IGI

GO:0080022 "primary root development" evidence=IGI

TAIR|locus:2116587 RR10 "response regulator 10" [Arabidopsis thaliana (taxid:3702)]

 Score = 239 (89.2 bits), Expect = 2.4e-19, P = 2.4e-19
 Identities = 49/111 (44%), Positives = 74/111 (66%)

Query:   104 RDPMVTETEEQDQNGSFVDSRSKSRRPDCTEEADSALRTDNSNEDPSARTLKRPRLVWTP 163
             R   + + +    NGS    ++  +R +  EE +   R  N N+DP+A+  K+PR++WT 
Sbjct:   134 RKSKLKKNKSNVSNGSGNCDKANRKRKEQYEEEEEEER-GNDNDDPTAQ--KKPRVLWTH 190

Query:   164 QLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRM 214
             +LH +F+  V HLG++ AVPK I+ LMNV+ LTRENVASHLQK+R+ LK++
Sbjct:   191 ELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRVALKKV 241

GO:0000156 "phosphorelay response regulator activity" evidence=IEA;ISS

GO:0000160 "phosphorelay signal transduction system" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

GO:0009736 "cytokinin mediated signaling pathway" evidence=IGI;RCA;TAS

GO:0009735 "response to cytokinin stimulus" evidence=IGI

GO:0010380 "regulation of chlorophyll biosynthetic process" evidence=IGI

GO:0031537 "regulation of anthocyanin metabolic process" evidence=IGI;RCA

GO:0048367 "shoot system development" evidence=IGI

GO:0080022 "primary root development" evidence=IGI

GO:0010029 "regulation of seed germination" evidence=RCA

GO:0048831 "regulation of shoot system development" evidence=RCA

TAIR|locus:2065398 RR14 "response regulator 14" [Arabidopsis thaliana (taxid:3702)]

 Score = 227 (85.0 bits), Expect = 1.4e-18, P = 1.4e-18
 Identities = 54/124 (43%), Positives = 78/124 (62%)

Query:   108 VTETEEQDQNGSFVDSRSKSRRPDCTEEADSALRTDNSNEDPSARTLKRPRLVWTPQLHK 167
             V+E  E+    S +  R+K ++   + + D     D+   DP     K+ R+VW+ +LH+
Sbjct:   160 VSECSEE----SLMKCRNKKKKKKRSVDRDD--NEDDLLLDPG--NSKKSRVVWSIELHQ 211

Query:   168 RFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRMQG---LSNDDPSS 224
             +FV+ V  LGI  AVPK I++LMNV GL+RENVASHLQK+RLYLKR+ G    SND  S+
Sbjct:   212 QFVNAVNKLGIDKAVPKRILELMNVPGLSRENVASHLQKFRLYLKRLSGEASQSNDSEST 271

Query:   225 SDHQ 228
               ++
Sbjct:   272 KRYE 275

GO:0000156 "phosphorelay response regulator activity" evidence=IEA;ISS

GO:0000160 "phosphorelay signal transduction system" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009736 "cytokinin mediated signaling pathway" evidence=RCA;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0042802 "identical protein binding" evidence=IPI

GO:0010029 "regulation of seed germination" evidence=RCA

GO:0031537 "regulation of anthocyanin metabolic process" evidence=RCA

GO:0048831 "regulation of shoot system development" evidence=RCA

UNIPROTKB|Q5Z5I4 GLK1 "Probable transcription factor GLK1" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 205 (77.2 bits), Expect = 7.4e-16, P = 7.4e-16
 Identities = 42/119 (35%), Positives = 68/119 (57%)

Query:   115 DQNGSFVDSRSKSRRPDCTEEADSALRTDNSNEDPSARTLKRPRLVWTPQLHKRFVDVVA 174
             D   + V+++S S  P  T  +     + + +   S+   K+ ++ WTP+LH+RFV  V 
Sbjct:   141 DDGAAAVEAKSSS--PSSTTSSSQEAESRHKSSSKSSHGKKKAKVDWTPELHRRFVQAVE 198

Query:   175 HLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRMQGLSNDDPS-SSDHQLFAS 232
              LGI  AVP  I+++M ++ LTR N+ASHLQKYR + K M     +  S +   Q++A+
Sbjct:   199 QLGIDKAVPSRILEIMGIDSLTRHNIASHLQKYRSHRKHMIAREAEAASWTQRRQIYAA 257

GO:0010638 "positive regulation of organelle organization" evidence=IGI

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IGI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00024277001 SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (311 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	339
TIGR01557	57	TIGR01557, myb_SHAQKYF, myb-like DNA-binding domai	9e-21
PLN03162	526	PLN03162, PLN03162, golden-2 like transcription fa	9e-15
pfam00249	47	pfam00249, Myb_DNA-binding, Myb-like DNA-binding d	9e-07

>gnl|CDD|130620 TIGR01557, myb_SHAQKYF, myb-like DNA-binding domain, SHAQKYF class

 Score = 84.0 bits (208), Expect = 9e-21
 Identities = 33/55 (60%), Positives = 41/55 (74%), Gaps = 1/55 (1%)

Query: 156 RPRLVWTPQLHKRFVDVVAHLGIKN-AVPKTIMQLMNVEGLTRENVASHLQKYRL 209
           +PR+VWT  LH RF+  V  LG  + A PK I++LM V+GLTR+ VASHLQKYRL
Sbjct: 1   KPRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRL 55

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif. Length = 57

>gnl|CDD|178707 PLN03162, PLN03162, golden-2 like transcription factor; Provisional

 Score = 74.8 bits (183), Expect = 9e-15
 Identities = 39/106 (36%), Positives = 58/106 (54%), Gaps = 4/106 (3%)

Query: 135 EADSALRTDNSNEDPSARTL----KRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLM 190
           E  S  R DN     S +      K+ ++ WTP+LH+RFV  V  LG++ A P  I++LM
Sbjct: 210 ECSSVDRKDNQASPKSCKNAAPGKKKAKVDWTPELHRRFVHAVEQLGVEKAFPSRILELM 269

Query: 191 NVEGLTRENVASHLQKYRLYLKRMQGLSNDDPSSSDHQLFASTPVP 236
            V+ LTR N+ASHLQKYR + + +     +  S +  + +   P P
Sbjct: 270 GVQCLTRHNIASHLQKYRSHRRHLAAREAEAASWTHRRAYTQAPWP 315

Length = 526

>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain

 Score = 44.8 bits (107), Expect = 9e-07
 Identities = 11/51 (21%), Positives = 18/51 (35%), Gaps = 4/51 (7%)

Query: 158 RLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYR 208
           R  WTP+  +  ++ V   G  N     I + +   G T     +    Y 
Sbjct: 1   RGPWTPEEDELLIEAVKKHGNGN--WSKIAKHLP--GRTDNQCKNRWNNYL 47

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 47

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	339
PLN03162	526	golden-2 like transcription factor; Provisional	99.95
TIGR01557	57	myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c	99.85
PF00249	48	Myb_DNA-binding: Myb-like DNA-binding domain; Inte	98.06
smart00426	68	TEA TEA domain.	95.51
smart00717	49	SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi	94.85
cd00167	45	SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do	94.36
PF01285	431	TEA: TEA/ATTS domain family; InterPro: IPR000818 T	87.76
PF12776	96	Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain;	82.43

>PLN03162 golden-2 like transcription factor; Provisional

Probab=99.95  E-value=3e-28  Score=238.62  Aligned_cols=100  Identities=35%  Similarity=0.600  Sum_probs=84.3

Q ss_pred             ccCCCCCCeecChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhhHHHHhhhcCCCCCCCCCCccccc
Q 047187          151 ARTLKRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRMQGLSNDDPSSSDHQLF  230 (339)
Q Consensus       151 ~~~~kKpRl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTr~nVkSHLQKYRl~lkR~~~l~~~gps~sd~~l~  230 (339)
                      +...||+||+||+|||+|||+||++||+++||||+||++|+|+||||+||||||||||+++||+.....+..+.++++++
T Consensus       230 ~~g~KKpRLrWTpELH~rFVeAV~qLG~dKATPK~ILelMnV~GLTRenVKSHLQKYRl~rk~l~~rEaEa~swt~kr~~  309 (526)
T PLN03162        230 APGKKKAKVDWTPELHRRFVHAVEQLGVEKAFPSRILELMGVQCLTRHNIASHLQKYRSHRRHLAAREAEAASWTHRRAY  309 (526)
T ss_pred             CCCCCCCcccCCHHHHHHHHHHHHHhCcCccchHHHHHHcCCCCcCHHHHHHHHHHHHHhcccccchhhhhccchhhhhh
Confidence            34589999999999999999999999999999999999999999999999999999999999887777777777776778


Q ss_pred             ccCCCCCCCCCCCCCCcccccc
Q 047187          231 ASTPVPPHNNGSGNSGHVGMAA  252 (339)
Q Consensus       231 ~stpvp~s~~~~~~~g~~~~P~  252 (339)
                      ..+|.+.+...++  .+..+||
T Consensus       310 ~~~P~~rs~~~~g--~p~~~pi  329 (526)
T PLN03162        310 TQAPWPRSSRRDG--LPYLVPI  329 (526)
T ss_pred             ccCCcccCCCCCC--Ccccccc
Confidence            7777666544333  3444554

>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class

Probab=99.85  E-value=8.7e-22  Score=147.55  Aligned_cols=55  Identities=60%  Similarity=0.983  Sum_probs=53.0

Q ss_pred             CCCeecChHHHHHHHHHHHHhCC-CCCChHHHHHhhCCCCCCHHHHHHHhhhhHHH
Q 047187          156 RPRLVWTPQLHKRFVDVVAHLGI-KNAVPKTIMQLMNVEGLTRENVASHLQKYRLY  210 (339)
Q Consensus       156 KpRl~WT~ELH~rFVeAV~qLG~-dkAtPK~ILelM~V~GLTr~nVkSHLQKYRl~  210 (339)
                      |+|++||+|||++||+||++||. +.|+||+|+++|++++||+.||+|||||||++
T Consensus         1 k~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~~k   56 (57)
T TIGR01557         1 KPRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRLK   56 (57)
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence            68999999999999999999995 89999999999999999999999999999985

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.

>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins

Probab=98.06  E-value=8.5e-06  Score=57.60  Aligned_cols=48  Identities=25%  Similarity=0.322  Sum_probs=42.3

Q ss_pred             CeecChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhhH
Q 047187          158 RLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYR  208 (339)
Q Consensus       158 Rl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTr~nVkSHLQKYR  208 (339)
                      |..||+|.+.+|++||.++|.+  .++.|.+.|+ .+.|..++++|.++|+
T Consensus         1 r~~Wt~eE~~~l~~~v~~~g~~--~W~~Ia~~~~-~~Rt~~qc~~~~~~~~   48 (48)
T PF00249_consen    1 RGPWTEEEDEKLLEAVKKYGKD--NWKKIAKRMP-GGRTAKQCRSRYQNLL   48 (48)
T ss_dssp             S-SS-HHHHHHHHHHHHHSTTT--HHHHHHHHHS-SSSTHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhCCc--HHHHHHHHcC-CCCCHHHHHHHHHhhC
Confidence            5689999999999999999965  5999999999 7899999999999985

These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....

>smart00426 TEA TEA domain

Probab=95.51  E-value=0.015  Score=46.24  Aligned_cols=46  Identities=28%  Similarity=0.486  Sum_probs=30.7

Q ss_pred             ecChHHHHHHHHHHHHhCCCCCChH-HHHHh-------------hC-CCC--CCHHHHHHHhhh
Q 047187          160 VWTPQLHKRFVDVVAHLGIKNAVPK-TIMQL-------------MN-VEG--LTRENVASHLQK  206 (339)
Q Consensus       160 ~WT~ELH~rFVeAV~qLG~dkAtPK-~ILel-------------M~-V~G--LTr~nVkSHLQK  206 (339)
                      +|.++|-..|++|+..+=. ..+-| +|+..             +- ..|  .|++||.||||-
T Consensus         5 vWp~~lE~Af~~aL~~~~~-~g~~kik~~~r~k~~gRNelIs~YI~~~tGk~Rt~KQVsShIQv   67 (68)
T smart00426        5 VWSPDIEQAFQEALAIYPP-CGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQV   67 (68)
T ss_pred             cCcHHHHHHHHHHHHHcCc-cCcccchhhhcCcccchhHHHHHHHHHHhCCccchhhhcchhee
Confidence            7999999999999997652 22222 22211             11 133  699999999994

>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Probab=94.85  E-value=0.11  Score=34.25  Aligned_cols=43  Identities=19%  Similarity=0.295  Sum_probs=36.8

Q ss_pred             eecChHHHHHHHHHHHHhC-CCCCChHHHHHhhCCCCCCHHHHHHHhhh
Q 047187          159 LVWTPQLHKRFVDVVAHLG-IKNAVPKTIMQLMNVEGLTRENVASHLQK  206 (339)
Q Consensus       159 l~WT~ELH~rFVeAV~qLG-~dkAtPK~ILelM~V~GLTr~nVkSHLQK  206 (339)
                      -.||++-...|+.++.++| .+   ++.|.+.|.  +-|..+|+.+..+
T Consensus         2 ~~Wt~~E~~~l~~~~~~~g~~~---w~~Ia~~~~--~rt~~~~~~~~~~   45 (49)
T smart00717        2 GEWTEEEDELLIELVKKYGKNN---WEKIAKELP--GRTAEQCRERWNN   45 (49)
T ss_pred             CCCCHHHHHHHHHHHHHHCcCC---HHHHHHHcC--CCCHHHHHHHHHH
Confidence            4699999999999999999 54   899998886  7899999876443

>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

Probab=94.36  E-value=0.16  Score=33.11  Aligned_cols=44  Identities=14%  Similarity=0.191  Sum_probs=36.9

Q ss_pred             ecChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhh
Q 047187          160 VWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKY  207 (339)
Q Consensus       160 ~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTr~nVkSHLQKY  207 (339)
                      .||.+-.+.|+.++.++|.  ..++.|.+.|+-  -|..+|+.+.+++
T Consensus         1 ~Wt~eE~~~l~~~~~~~g~--~~w~~Ia~~~~~--rs~~~~~~~~~~~   44 (45)
T cd00167           1 PWTEEEDELLLEAVKKYGK--NNWEKIAKELPG--RTPKQCRERWRNL   44 (45)
T ss_pred             CCCHHHHHHHHHHHHHHCc--CCHHHHHhHcCC--CCHHHHHHHHHHh
Confidence            4999999999999999993  238999998854  8999999886654

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.

>PF01285 TEA: TEA/ATTS domain family; InterPro: IPR000818 Transcriptional enhancer activators are nuclear proteins that contain a TEA/ATTSdomain, a DNA-binding region of 66-68 amino acids

Probab=87.76  E-value=0.53  Score=48.07  Aligned_cols=53  Identities=25%  Similarity=0.436  Sum_probs=29.4

Q ss_pred             CCCCeecChHHHHHHHHHHHHh---CCCCC--------ChHHHHHhhCC---CCCCHHHHHHHhhhh
Q 047187          155 KRPRLVWTPQLHKRFVDVVAHL---GIKNA--------VPKTIMQLMNV---EGLTRENVASHLQKY  207 (339)
Q Consensus       155 kKpRl~WT~ELH~rFVeAV~qL---G~dkA--------tPK~ILelM~V---~GLTr~nVkSHLQKY  207 (339)
                      ++..-+|++++...|++|+..+   |..|-        .=+-|.+.+..   .-.|++||+||||--
T Consensus        46 ~~~~~vw~~~~e~af~~al~~~~~~g~~k~~~~~~~~grn~li~~yi~~~tg~~rt~kqvsshiqvl  112 (431)
T PF01285_consen   46 GDGEGVWPPDIEQAFQEALAIYPPCGRRKLSDEGKMYGRNELISDYIKLKTGKTRTRKQVSSHIQVL  112 (431)
T ss_dssp             GGGS--S-HHHHHHHHHHHHHS-SSS---HHHH-----THHHHHHHHHHHHS----SHHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHhCCCCCCcccccccccccchhHHHHHHHHHhCcccchhHHHHHHHHH
Confidence            4567899999999999999976   32220        00111111111   347999999999998

The TEA/ATTS domain is found in the N-termini of certain gene regulatory proteins, such as the Simian virus 40 (SV40) enhancer factor TEF-1, yeast trans-acting factor TEC-1 (which is required for TY1 enhancer activity), and the Aspergillus abaA regulatory gene product. SV40 and retroviral enhancers, and those to which TEF-1, TEC-1 and abaA proteins bind, contain GT-IIC sites: the TEA/ATTS domain may therefore recognise and bind such sites. Secondary structure predictions suggest the presence of 3 helices, but have not confirmed the presence of the helix-turn-helix motif characteristic of many DNA-binding proteins: DNA-binding may therefore be effected by a different mechanism [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3L15_B 2HZD_A 3KYS_A 3JUA_C 4EAZ_B.

>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains

Probab=82.43  E-value=2.2  Score=33.03  Aligned_cols=52  Identities=15%  Similarity=0.318  Sum_probs=38.1

Q ss_pred             ecChHHHHHHHHHHHHh---CCC-------CCChHHHHHhhCC---CCCCHHHHHHHhhhhHHHH
Q 047187          160 VWTPQLHKRFVDVVAHL---GIK-------NAVPKTIMQLMNV---EGLTRENVASHLQKYRLYL  211 (339)
Q Consensus       160 ~WT~ELH~rFVeAV~qL---G~d-------kAtPK~ILelM~V---~GLTr~nVkSHLQKYRl~l  211 (339)
                      .||++..+.||+++...   |..       +...+.|.+.++-   ..+|..||++|++..|...
T Consensus         1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~lk~~y   65 (96)
T PF12776_consen    1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTLKKDY   65 (96)
T ss_pred             CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHH
Confidence            59999999999998643   422       2346677777763   4579999999998766544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	339
1irz_A	64	Solution Structure Of Arr10-B Belonging To The Garp		3e-16

>pdb|1IRZ|A Chain A, Solution Structure Of Arr10-B Belonging To The Garp Family Of Plant Myb-Related Dna Binding Motifs Of The Arabidopsis Response Regulators Length = 64

Iteration: 1
 Score = 82.8 bits (203), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 36/60 (60%), Positives = 50/60 (83%)
Query: 155 KRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRM 214
           K+PR++WT +LH +F+  V HLG++ AVPK I+ LMNV+ LTRENVASHLQK+R+ LK++
Sbjct: 4   KKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRVALKKV 63

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	339
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	1e-29

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11 Length = 64

 Score =  107 bits (268), Expect = 1e-29
 Identities = 36/62 (58%), Positives = 50/62 (80%)

Query: 153 TLKRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLK 212
             K+PR++WT +LH +F+  V HLG++ AVPK I+ LMNV+ LTRENVASHLQK+R+ LK
Sbjct: 2   AQKKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRVALK 61

Query: 213 RM 214
           ++
Sbjct: 62  KV 63

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	339
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	99.96
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	97.46
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	97.42
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	97.14
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	96.7
2iw5_B	235	Protein corest, REST corepressor 1; oxidoreductase	96.27
3sjm_A	64	Telomeric repeat-binding factor 2; human telomeric	96.23
2xag_B	482	REST corepressor 1; amine oxidase, chromatin regul	96.15
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	95.95
2cqq_A	72	RSGI RUH-037, DNAJ homolog subfamily C member 1; m	95.75
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	95.7
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	95.36
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	94.84
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	94.82
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	94.64
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	94.63
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	94.56
2hzd_A	82	Transcriptional enhancer factor TEF-1; DNA-binding	94.55
2eqr_A	61	N-COR1, N-COR, nuclear receptor corepressor 1; SAN	94.54
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	94.21
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	93.74
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	93.65
2yqk_A	63	Arginine-glutamic acid dipeptide repeats protein;	93.19
2cjj_A	93	Radialis; plant development, DNA-binding protein,	93.16
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	92.24
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	92.22
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	92.09
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	91.96
1x58_A	62	Hypothetical protein 4930532D21RIK; MUS musculus a	89.86
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	89.7
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	88.94
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	89.3
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	87.97
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	87.27
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	87.02
4eef_G	74	F-HB80.4, designed hemagglutinin binding protein;	86.83
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	86.23
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	85.52
2crg_A	70	Metastasis associated protein MTA3; transcription	83.98
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	82.72
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	81.67
1wgx_A	73	KIAA1903 protein; MYB DNA-binding domain, human cD	81.33

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11

Probab=99.96  E-value=2.2e-30  Score=197.91  Aligned_cols=62  Identities=58%  Similarity=1.017  Sum_probs=60.0

Q ss_pred             CCCCCCeecChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhhHHHHhhh
Q 047187          153 TLKRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRM  214 (339)
Q Consensus       153 ~~kKpRl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTr~nVkSHLQKYRl~lkR~  214 (339)
                      +.+|+|++||+|||++||+||++||.++|+||+||++|+|+|||++||||||||||++++|.
T Consensus         2 ~~~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~~l~r~   63 (64)
T 1irz_A            2 AQKKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRVALKKV   63 (64)
T ss_dssp             CCCCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHSC
T ss_pred             CCCCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHHHHHcc
Confidence            47899999999999999999999999999999999999999999999999999999999985

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.46  E-value=0.00039  Score=52.19  Aligned_cols=56  Identities=21%  Similarity=0.301  Sum_probs=46.7

Q ss_pred             CCCeecChHHHHHHHHHHHHhCCCC---CChHHHHHhhCCCCCCHHHHHHHhhhhHHHHhh
Q 047187          156 RPRLVWTPQLHKRFVDVVAHLGIKN---AVPKTIMQLMNVEGLTRENVASHLQKYRLYLKR  213 (339)
Q Consensus       156 KpRl~WT~ELH~rFVeAV~qLG~dk---AtPK~ILelM~V~GLTr~nVkSHLQKYRl~lkR  213 (339)
                      ..+-.||+|.+++|+++|.++|.+.   -.++.|-+.|  ++-|..||+.|-|||...+.+
T Consensus         6 ~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~--~~Rt~~qcr~r~~~~l~~~~k   64 (75)
T 2yum_A            6 SGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADEL--GNRTAKQVASQVQKYFIKLTK   64 (75)
T ss_dssp             CCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHH--SSSCHHHHHHHHHHHHGGGST
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHh--CCCCHHHHHHHHHHHHHHHHh
Confidence            3455899999999999999999533   3589998887  479999999999999876544

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=97.42  E-value=0.00067  Score=50.89  Aligned_cols=54  Identities=20%  Similarity=0.160  Sum_probs=45.9

Q ss_pred             CCCeecChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhhHHHHhhh
Q 047187          156 RPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRM  214 (339)
Q Consensus       156 KpRl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTr~nVkSHLQKYRl~lkR~  214 (339)
                      ..+-.||+|.+++|+++|.++|.   .++.|-++|  +|-|..+|+.|-++|.....+.
T Consensus         7 ~~~~~WT~eEd~~l~~~~~~~G~---~W~~Ia~~~--~~Rt~~q~k~r~~~~l~~~~~~   60 (72)
T 2cu7_A            7 GYSVKWTIEEKELFEQGLAKFGR---RWTKISKLI--GSRTVLQVKSYARQYFKNKVKC   60 (72)
T ss_dssp             SCCCCCCHHHHHHHHHHHHHTCS---CHHHHHHHH--SSSCHHHHHHHHHHHHHHHSCS
T ss_pred             cCCCCCCHHHHHHHHHHHHHHCc---CHHHHHHHc--CCCCHHHHHHHHHHHHHHHHhc
Confidence            34668999999999999999997   499999876  6799999999999987665443

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}

Probab=97.14  E-value=0.0013  Score=51.07  Aligned_cols=50  Identities=10%  Similarity=0.108  Sum_probs=42.8

Q ss_pred             CCCCCeecChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhhH
Q 047187          154 LKRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYR  208 (339)
Q Consensus       154 ~kKpRl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTr~nVkSHLQKYR  208 (339)
                      ....+-.||+|.+++|++||+++| .  -++.|-++|+  +-|..||+.|-++|-
T Consensus        14 ~~~~~~~WT~eEd~~Ll~~v~~~G-~--~W~~IA~~v~--~RT~~qcr~r~~~~~   63 (79)
T 2yus_A           14 GASAGREWTEQETLLLLEALEMYK-D--DWNKVSEHVG--SRTQDECILHFLRLP   63 (79)
T ss_dssp             SSCCSCCCCHHHHHHHHHHHHHSS-S--CHHHHHHHHS--SCCHHHHHHHHTTSC
T ss_pred             ccccCCCcCHHHHHHHHHHHHHhC-C--CHHHHHHHcC--CCCHHHHHHHHHHhc
Confidence            344567899999999999999999 3  3999999986  699999999988773

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1

Probab=96.70  E-value=0.0052  Score=44.61  Aligned_cols=49  Identities=24%  Similarity=0.322  Sum_probs=41.8

Q ss_pred             CCCeecChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhhH
Q 047187          156 RPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYR  208 (339)
Q Consensus       156 KpRl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTr~nVkSHLQKYR  208 (339)
                      -.|-.||+|..+++++||+++|..+  ++.|-+.|  ++-|..|++.|-++|-
T Consensus         6 ~~~~~WT~eED~~L~~~v~~~G~~~--W~~Ia~~~--~~Rt~~qcr~r~~~~l   54 (60)
T 1x41_A            6 SGDPSWTAQEEMALLEAVMDCGFGN--WQDVANQM--CTKTKEECEKHYMKYF   54 (60)
T ss_dssp             CCCSSSCHHHHHHHHHHHHHTCTTC--HHHHHHHH--TTSCHHHHHHHHHHHT
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCcCc--HHHHHHHh--CCCCHHHHHHHHHHHc
Confidence            3456799999999999999999533  99999998  5799999999877764

>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*

Probab=96.27  E-value=0.0043  Score=57.66  Aligned_cols=53  Identities=15%  Similarity=0.247  Sum_probs=46.6

Q ss_pred             CCCCCCeecChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhhHHH
Q 047187          153 TLKRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLY  210 (339)
Q Consensus       153 ~~kKpRl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTr~nVkSHLQKYRl~  210 (339)
                      ...|..-+||+|.++.|++|+..+|-+   +..|-+++  .+-|..||++|-++||.+
T Consensus       128 ~~~k~s~~WTeEE~~lFleAl~kYGKD---W~~IAk~V--gTKT~~QcKnfY~~~kKR  180 (235)
T 2iw5_B          128 VIQKCNARWTTEEQLLAVQAIRKYGRD---FQAISDVI--GNKSVVQVKNFFVNYRRR  180 (235)
T ss_dssp             CCCCCCSSCCHHHHHHHHHHHHHHSSC---HHHHHHHH--SSCCHHHHHHHHHHTTTT
T ss_pred             CCCccCCCCCHHHHHHHHHHHHHHCcC---HHHHHHHc--CCCCHHHHHHHHHHHHHH
Confidence            345678899999999999999999965   99999885  569999999999999865

>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A

Probab=96.23  E-value=0.013  Score=43.58  Aligned_cols=52  Identities=15%  Similarity=0.134  Sum_probs=43.5

Q ss_pred             CCCeecChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhhHHHHh
Q 047187          156 RPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLK  212 (339)
Q Consensus       156 KpRl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTr~nVkSHLQKYRl~lk  212 (339)
                      +.|-.||+|.-++++++|+++|..+  ++.|.+.+.+.+-|-.|++   .+||..+|
T Consensus         9 ~kk~~WT~eED~~L~~~V~~~G~~~--W~~Ia~~~~~~~Rt~~qcr---~Rw~nl~k   60 (64)
T 3sjm_A            9 TKKQKWTVEESEWVKAGVQKYGEGN--WAAISKNYPFVNRTAVMIK---DRWRTMKR   60 (64)
T ss_dssp             -CCCCCCHHHHHHHHHHHHHHCTTC--HHHHHHHSCCSSCCHHHHH---HHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHccCCCc--hHHHHhhcCCCCCCHHHHH---HHHHHHhc
Confidence            3456799999999999999999543  9999999888899999997   56777655

>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*

Probab=96.15  E-value=0.006  Score=61.36  Aligned_cols=52  Identities=15%  Similarity=0.238  Sum_probs=46.4

Q ss_pred             CCCCeecChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhhHHHH
Q 047187          155 KRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYL  211 (339)
Q Consensus       155 kKpRl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTr~nVkSHLQKYRl~l  211 (339)
                      .|...+||++.|..|++||.+.|-+   ++.|-+.++.  -|..||++|-+|||.++
T Consensus       377 ~~~~~~WT~eE~~~f~~al~~yGkd---w~~IA~~VgT--KT~~Qvk~fy~~~kkr~  428 (482)
T 2xag_B          377 QKCNARWTTEEQLLAVQAIRKYGRD---FQAISDVIGN--KSVVQVKNFFVNYRRRF  428 (482)
T ss_dssp             CCCCSCCCHHHHHHHHHHHHHHTTC---HHHHHHHHSS--CCHHHHHHHHHHTTTTT
T ss_pred             cccCCCCCHHHHHHHHHHHHHHCcC---HHHHHHHhCC--CCHHHHHHHHHHHHHHh
Confidence            4567899999999999999999965   9999999876  79999999999999753

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}

Probab=95.95  E-value=0.016  Score=41.92  Aligned_cols=49  Identities=20%  Similarity=0.282  Sum_probs=41.7

Q ss_pred             CeecChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhhHH
Q 047187          158 RLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRL  209 (339)
Q Consensus       158 Rl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTr~nVkSHLQKYRl  209 (339)
                      +-.||+|..+++++||+++|..+  ++.|-+.|+. +.|..|++.|-++|.+
T Consensus         9 ~~~WT~eED~~L~~~v~~~G~~~--W~~IA~~~~~-~Rt~~qcr~r~~~~~~   57 (58)
T 2elk_A            9 DENWGADEELLLIDACETLGLGN--WADIADYVGN-ARTKEECRDHYLKTYI   57 (58)
T ss_dssp             CCCCCHHHHHHHHHHHHHTTTTC--HHHHHHHHCS-SCCHHHHHHHHHHHTT
T ss_pred             CCCCCHHHHHHHHHHHHHHCcCC--HHHHHHHHCC-CCCHHHHHHHHHHHcc
Confidence            34699999999999999999543  9999999862 6999999999888754

>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=95.75  E-value=0.022  Score=43.66  Aligned_cols=48  Identities=10%  Similarity=0.152  Sum_probs=39.6

Q ss_pred             CeecChHHHHHHHHHHHHhCCC-CCChHHHHHhhCCCCCCHHHHHHHhhhhH
Q 047187          158 RLVWTPQLHKRFVDVVAHLGIK-NAVPKTIMQLMNVEGLTRENVASHLQKYR  208 (339)
Q Consensus       158 Rl~WT~ELH~rFVeAV~qLG~d-kAtPK~ILelM~V~GLTr~nVkSHLQKYR  208 (339)
                      +-.||.|-+++|+.|+.+++.+ .-.+.+|-+.|   |-|.++|+.|-++..
T Consensus         8 ~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l---gRt~~eV~~~y~~L~   56 (72)
T 2cqq_A            8 APEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL---GRSVTDVTTKAKQLK   56 (72)
T ss_dssp             CCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH---TSCHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh---CCCHHHHHHHHHHHH
Confidence            3469999999999999999843 34588999887   589999999866653

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A

Probab=95.70  E-value=0.035  Score=41.08  Aligned_cols=55  Identities=18%  Similarity=0.158  Sum_probs=46.3

Q ss_pred             CCCCCCeecChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhhHHHHh
Q 047187          153 TLKRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLK  212 (339)
Q Consensus       153 ~~kKpRl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTr~nVkSHLQKYRl~lk  212 (339)
                      ..++.|-.||+|.-.+.+++|+++|..  .++.|.+.|...|-|-.|++-   +|+.+|+
T Consensus         5 ~~~~~r~~WT~eED~~L~~~v~~~G~~--~W~~Ia~~~~~~~Rt~~qcr~---Rw~~~l~   59 (69)
T 1ity_A            5 HRARKRQAWLWEEDKNLRSGVRKYGEG--NWSKILLHYKFNNRTSVMLKD---RWRTMKK   59 (69)
T ss_dssp             TCSSSCCCCCHHHHHHHHHHHHHHCSS--CHHHHHHHSCCSSCCHHHHHH---HHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCCC--cHHHHHHHcCcCCCCHHHHHH---HHHHHcC
Confidence            466778899999999999999999953  399999999766899999985   5776666

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}

Probab=95.36  E-value=0.053  Score=38.88  Aligned_cols=50  Identities=12%  Similarity=0.191  Sum_probs=40.7

Q ss_pred             CCCCCeecChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhh
Q 047187          154 LKRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKY  207 (339)
Q Consensus       154 ~kKpRl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTr~nVkSHLQKY  207 (339)
                      +...|-.||+|..++++++|.++|..+  ++.|.+.|  ++-|..|++.+-++|
T Consensus         4 p~~~k~~Wt~eED~~L~~~v~~~G~~~--W~~Ia~~~--~~Rt~~qcr~Rw~~~   53 (60)
T 2d9a_A            4 GSSGKVKWTHEEDEQLRALVRQFGQQD--WKFLASHF--PNRTDQQCQYRWLRV   53 (60)
T ss_dssp             CCCCCSCCCHHHHHHHHHHHHHTCTTC--HHHHHHHC--SSSCHHHHHHHHHHT
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCCC--HHHHHHHc--cCCCHHHHHHHHHHH
Confidence            344577899999999999999999422  99999986  579999998765544

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3

Probab=94.84  E-value=0.077  Score=43.54  Aligned_cols=58  Identities=14%  Similarity=0.159  Sum_probs=47.9

Q ss_pred             cCCCCCCeecChHHHHHHHHHHHHhCCCCCChHHHHHhhC--CCCCCHHHHHHHhhhhHHHHhhh
Q 047187          152 RTLKRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMN--VEGLTRENVASHLQKYRLYLKRM  214 (339)
Q Consensus       152 ~~~kKpRl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~--V~GLTr~nVkSHLQKYRl~lkR~  214 (339)
                      ...++.|-.||+|.-...+++|+++|..+  ++.|++.+.  .++-|..++|   .|||..+++.
T Consensus         7 ~~~rr~r~~WT~EEd~~L~~gV~k~G~g~--W~~I~~~~~~~f~~RT~v~lK---drWrnllk~~   66 (105)
T 2aje_A            7 DPQRRIRRPFSVAEVEALVQAVEKLGTGR--WRDVKLCAFEDADHRTYVDLK---DKWKTLVHTA   66 (105)
T ss_dssp             --CCCCCCSCCHHHHHHHHHHHHHHCSSS--HHHHHSSSSSSTTCCCHHHHH---HHHHHHHHTT
T ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHhCCCC--hHHHHHHhccccCCCCHHHHH---HHHHHHHhhc
Confidence            35778899999999999999999999633  999998763  4899999999   5788887754

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A

Probab=94.82  E-value=0.07  Score=37.14  Aligned_cols=46  Identities=20%  Similarity=0.250  Sum_probs=38.8

Q ss_pred             CeecChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhh
Q 047187          158 RLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKY  207 (339)
Q Consensus       158 Rl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTr~nVkSHLQKY  207 (339)
                      |-.||+|..++++++|.++|..  .++.|.+.|  +|-|..+++.+-++|
T Consensus         3 ~~~Wt~eED~~L~~~v~~~G~~--~W~~Ia~~~--~~Rt~~qcr~Rw~~~   48 (52)
T 1guu_A            3 KTRWTREEDEKLKKLVEQNGTD--DWKVIANYL--PNRTDVQCQHRWQKV   48 (52)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCSS--CHHHHHHTS--TTCCHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCCC--CHHHHHHHc--CCCCHHHHHHHHHHH
Confidence            5579999999999999999952  399999886  589999999775554

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A

Probab=94.64  E-value=0.074  Score=37.09  Aligned_cols=46  Identities=17%  Similarity=0.295  Sum_probs=38.6

Q ss_pred             CeecChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhh
Q 047187          158 RLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKY  207 (339)
Q Consensus       158 Rl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTr~nVkSHLQKY  207 (339)
                      |-.||+|..++++++|.++|..  .++.|.+.|  +|-|..+++.|-++|
T Consensus         3 k~~Wt~eED~~L~~~v~~~G~~--~W~~Ia~~~--~~Rt~~qcr~Rw~~~   48 (52)
T 1gvd_A            3 KGPWTKEEDQRLIKLVQKYGPK--RWSVIAKHL--KGRIGKQCRERWHNH   48 (52)
T ss_dssp             CCSCCHHHHHHHHHHHHHHCTT--CHHHHHTTS--TTCCHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHHCcC--hHHHHHHHc--CCCCHHHHHHHHHHH
Confidence            4579999999999999999953  399998887  689999998775554

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=94.63  E-value=0.18  Score=36.82  Aligned_cols=51  Identities=12%  Similarity=0.201  Sum_probs=42.0

Q ss_pred             CCeecChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhhHHHHhh
Q 047187          157 PRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKR  213 (339)
Q Consensus       157 pRl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTr~nVkSHLQKYRl~lkR  213 (339)
                      .+-.||+|..++++++++++|.   .+..|-+++   |-|-.+|+.|-++|-....+
T Consensus         8 ~k~~WT~eED~~L~~~~~~~g~---~W~~Ia~~~---gRt~~qcr~Rw~~~l~~~~~   58 (66)
T 2din_A            8 KKTEWSREEEEKLLHLAKLMPT---QWRTIAPII---GRTAAQCLEHYEFLLDKAAQ   58 (66)
T ss_dssp             SCCCCCHHHHHHHHHHHHHCTT---CHHHHHHHH---SSCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHcCC---CHHHHhccc---CcCHHHHHHHHHHHhChHhc
Confidence            4557999999999999999996   499999965   59999999998777554433

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=94.56  E-value=0.19  Score=38.62  Aligned_cols=48  Identities=10%  Similarity=0.118  Sum_probs=37.5

Q ss_pred             CeecChHHHHHHHHHHHHhCCCC-CChHHHHHhhCCCCCCHHHHHHHhhhh
Q 047187          158 RLVWTPQLHKRFVDVVAHLGIKN-AVPKTIMQLMNVEGLTRENVASHLQKY  207 (339)
Q Consensus       158 Rl~WT~ELH~rFVeAV~qLG~dk-AtPK~ILelM~V~GLTr~nVkSHLQKY  207 (339)
                      +-.||.+..++|++||.++|.+. -.+.+|-++|  +|-|..+|+.|-+++
T Consensus        18 ~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~v--pGRT~~qcr~Ry~~L   66 (73)
T 2cqr_A           18 EEPWTQNQQKLLELALQQYPRGSSDCWDKIARCV--PSKSKEDCIARYKLL   66 (73)
T ss_dssp             SCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGC--SSSCHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHc--CCCCHHHHHHHHHHH
Confidence            45699999999999999999431 2366666555  689999999986654

>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens}

Probab=94.55  E-value=0.024  Score=45.31  Aligned_cols=55  Identities=24%  Similarity=0.334  Sum_probs=37.7

Q ss_pred             CCeecChHHHHHHHHHHHHhCCCCCChHHHH------------------HhhCCCCCCHHHHHHHhhhhHHHHhh
Q 047187          157 PRLVWTPQLHKRFVDVVAHLGIKNAVPKTIM------------------QLMNVEGLTRENVASHLQKYRLYLKR  213 (339)
Q Consensus       157 pRl~WT~ELH~rFVeAV~qLG~dkAtPK~IL------------------elM~V~GLTr~nVkSHLQKYRl~lkR  213 (339)
                      ..-+|.++|-+.|++|++.+-... +-|.+|                  ..-+ .--|+.||.||||--+...+|
T Consensus         5 ~e~vW~~~lE~aF~eaL~~yp~~g-~~k~~ls~~gk~~gRNelIs~yI~~~tG-k~RtrKQVSShiQvlk~~~~~   77 (82)
T 2hzd_A            5 AEGVWSPDIEQSFQEALSIYPPCG-RRKIILSDEGKMYGRNELIARYIKLRTG-KTRTRKQVSSHIQVLARRKSR   77 (82)
T ss_dssp             GSCCSCHHHHHHHHHHHHHSCSSS-CCCCCHHHHCCCCCTHHHHHHHHHHHHS-CCCCSHHHHHHHHHHHHHHTT
T ss_pred             cCCcCCHHHHHHHHHHHHHcCCCC-ccceeecccccccchhHHHHHHHHHHHc-ccCCccchhHHHHHHHHHHhh
Confidence            456899999999999999765211 112212                  1111 457999999999998876554

>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=94.54  E-value=0.13  Score=37.60  Aligned_cols=49  Identities=18%  Similarity=0.129  Sum_probs=38.7

Q ss_pred             CCCCCeecChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhhHHH
Q 047187          154 LKRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLY  210 (339)
Q Consensus       154 ~kKpRl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTr~nVkSHLQKYRl~  210 (339)
                      .++..-.||+|.|+.|++|+.+.|-+   ...|.++|  ++-|..+|..   .|-+.
T Consensus         8 ~r~~~~~WT~eE~~~F~~~~~~~gk~---w~~Ia~~l--~~rt~~~~v~---~Yy~~   56 (61)
T 2eqr_A            8 DRQFMNVWTDHEKEIFKDKFIQHPKN---FGLIASYL--ERKSVPDCVL---YYYLT   56 (61)
T ss_dssp             CCSCCCSCCHHHHHHHHHHHHHSTTC---HHHHHHHC--TTSCHHHHHH---HHHHH
T ss_pred             ccccCCCCCHHHHHHHHHHHHHhCCC---HHHHHHHc--CCCCHHHHHH---HHHHh
Confidence            44567789999999999999999932   88998664  6799999864   45554

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}

Probab=94.21  E-value=0.15  Score=42.84  Aligned_cols=57  Identities=21%  Similarity=0.232  Sum_probs=48.1

Q ss_pred             CCCCCCeecChHHHHHHHHHHHHhCCCCCChHHHHHhh--CCCCCCHHHHHHHhhhhHHHHhhh
Q 047187          153 TLKRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLM--NVEGLTRENVASHLQKYRLYLKRM  214 (339)
Q Consensus       153 ~~kKpRl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM--~V~GLTr~nVkSHLQKYRl~lkR~  214 (339)
                      ..+|.|-.||+|.-+..+++|+++|..+  ++.|++.+  ..++-|..++|   .|||..+++.
T Consensus        26 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~--W~~I~~~~~~~~~~RT~vdlK---dRWrnllk~~   84 (122)
T 2roh_A           26 GQRRIRRPFTVAEVELLVEAVEHLGTGR--WRDVKFRAFENVHHRTYVDLK---DKWKTLVHTA   84 (122)
T ss_dssp             CCCCCCCCCCHHHHHHHHHHHHHHSSSC--HHHHHHHHHSSSCCCCHHHHH---HHHHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCCCC--hHHHHHHhccccCCCCHHHHH---HHHHHHHhhc
Confidence            4667788999999999999999999633  99999876  35899999999   6899888754

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A

Probab=93.74  E-value=0.21  Score=35.10  Aligned_cols=50  Identities=18%  Similarity=0.166  Sum_probs=41.0

Q ss_pred             CeecChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhhHHHHh
Q 047187          158 RLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLK  212 (339)
Q Consensus       158 Rl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTr~nVkSHLQKYRl~lk  212 (339)
                      |-.||+|..++.+++|+.+|..  .++.|.+.|...+-|-.+++-   +|+..+|
T Consensus         2 r~~WT~eEd~~L~~~v~~~G~~--~W~~Ia~~~~~~~Rt~~qcr~---Rw~~~~k   51 (53)
T 1w0t_A            2 RQAWLWEEDKNLRSGVRKYGEG--NWSKILLHYKFNNRTSVMLKD---RWRTMKK   51 (53)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCTT--CHHHHHHHSCCSSCCHHHHHH---HHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHHCcC--CHHHHHHHcCCCCCCHHHHHH---HHHHHHc
Confidence            4579999999999999999953  399999998766889999985   4555544

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=93.65  E-value=0.21  Score=36.81  Aligned_cols=50  Identities=12%  Similarity=0.145  Sum_probs=40.3

Q ss_pred             CCCCCeecChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhh
Q 047187          154 LKRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKY  207 (339)
Q Consensus       154 ~kKpRl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTr~nVkSHLQKY  207 (339)
                      +...|-.||+|.-++++++|.++|..  .++.|-+.|.  +-|..|++-+-++|
T Consensus         5 ~~~k~~~Wt~eED~~L~~~v~~~G~~--~W~~Ia~~l~--~Rt~~qcr~Rw~~~   54 (70)
T 2dim_A            5 SSGKGGVWRNTEDEILKAAVMKYGKN--QWSRIASLLH--RKSAKQCKARWYEW   54 (70)
T ss_dssp             SCSTTCCCCHHHHHHHHHHHHHTCSS--CHHHHHHHST--TCCHHHHHHHHHHT
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCcC--CHHHHHHHhc--CCCHHHHHHHHHHH
Confidence            33456789999999999999999943  3999999986  79999998654443

>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=93.19  E-value=0.38  Score=35.44  Aligned_cols=50  Identities=18%  Similarity=0.214  Sum_probs=37.5

Q ss_pred             CCCCCeecChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhhHHH
Q 047187          154 LKRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLY  210 (339)
Q Consensus       154 ~kKpRl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTr~nVkSHLQKYRl~  210 (339)
                      ++..+-.||+|.+++|.+|+.+.|-+   ...|.+.| |+.-|..+|.   |-|-+.
T Consensus         5 p~~~~~~WT~eE~~~Fe~~l~~yGKd---f~~I~~~~-v~~Kt~~~~v---~fYY~w   54 (63)
T 2yqk_A            5 SSGIEKCWTEDEVKRFVKGLRQYGKN---FFRIRKEL-LPNKETGELI---TFYYYW   54 (63)
T ss_dssp             CCCCCCSCCHHHHHHHHHHHHHTCSC---HHHHHHHS-CTTSCHHHHH---HHHHHH
T ss_pred             CCcCCCCcCHHHHHHHHHHHHHhCcc---HHHHHHHH-cCCCcHHHHH---HHHhcc
Confidence            44456789999999999999999954   77886622 4568888885   555554

>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3

Probab=93.16  E-value=0.19  Score=40.27  Aligned_cols=53  Identities=21%  Similarity=0.226  Sum_probs=43.2

Q ss_pred             eecChHHHHHHHHHHHHhCCC-CCChHHHHHhhCCCCCCHHHHHHHhhhhHHHHhh
Q 047187          159 LVWTPQLHKRFVDVVAHLGIK-NAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKR  213 (339)
Q Consensus       159 l~WT~ELH~rFVeAV~qLG~d-kAtPK~ILelM~V~GLTr~nVkSHLQKYRl~lkR  213 (339)
                      -.||.|..+.|++|+.++|.+ .-.+.+|-+.+  +|-|.++|+.|-+++...++.
T Consensus         9 ~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~v--pGRT~~q~k~ry~~l~~dv~~   62 (93)
T 2cjj_A            9 RPWSAKENKAFERALAVYDKDTPDRWANVARAV--EGRTPEEVKKHYEILVEDIKY   62 (93)
T ss_dssp             CSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHS--TTCCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHc--CCCCHHHHHHHHHHHHHHHHH
Confidence            469999999999999999844 23488888776  589999999998887765543

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A

Probab=92.24  E-value=0.27  Score=38.31  Aligned_cols=48  Identities=21%  Similarity=0.409  Sum_probs=39.1

Q ss_pred             CeecChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhhHHHHhh
Q 047187          158 RLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKR  213 (339)
Q Consensus       158 Rl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTr~nVkSHLQKYRl~lkR  213 (339)
                      +-.||+|....++++|.++|..   +..|-+.|  +|-|..+|+.|   |+..++|
T Consensus        56 ~~~Wt~eEd~~L~~~~~~~G~~---W~~Ia~~l--~gRt~~~~k~r---w~~~~~~  103 (105)
T 1gv2_A           56 KTSWTEEEDRIIYQAHKRLGNR---WAEIAKLL--PGRTDNAIKNH---WNSTMRR  103 (105)
T ss_dssp             CCCCCHHHHHHHHHHHHHHSSC---HHHHHTTC--TTCCHHHHHHH---HHHHTC-
T ss_pred             ccCCCHHHHHHHHHHHHHhCCC---HHHHHHHc--CCCCHHHHHHH---HHHHHhc
Confidence            5579999999999999999953   99998864  78999999987   4444443

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}

Probab=92.22  E-value=0.35  Score=40.61  Aligned_cols=57  Identities=16%  Similarity=0.211  Sum_probs=48.0

Q ss_pred             CCCCCCeecChHHHHHHHHHHHHhCCCCCChHHHHHhhC--CCCCCHHHHHHHhhhhHHHHhhh
Q 047187          153 TLKRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMN--VEGLTRENVASHLQKYRLYLKRM  214 (339)
Q Consensus       153 ~~kKpRl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~--V~GLTr~nVkSHLQKYRl~lkR~  214 (339)
                      ..++.|-.||+|.-+..+++|+++|..+  ++.|++.+.  .++-|-.++|.   |||..+++.
T Consensus        12 ~~rr~r~~WT~EEd~~L~~gV~k~G~G~--W~~Ia~~~~~~f~~RT~v~lKd---RWrnllk~~   70 (121)
T 2juh_A           12 SQRRIRRPFSVAEVEALVEAVEHLGTGR--WRDVKMRAFDNADHRTYVDLKD---KWKTLVHTA   70 (121)
T ss_dssp             CCCCSSCCCCHHHHHHHHHHHHHHGGGC--HHHHHHHHCSCCSSCCSHHHHH---HHHHHHHHH
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHHCCCC--HHHHHHHhccccCCCCHHHHHH---HHHHHHhhh
Confidence            4677889999999999999999999533  999999875  48999999994   788877653

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A

Probab=92.09  E-value=0.48  Score=37.38  Aligned_cols=48  Identities=15%  Similarity=0.179  Sum_probs=40.8

Q ss_pred             CeecChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhhHHH
Q 047187          158 RLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLY  210 (339)
Q Consensus       158 Rl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTr~nVkSHLQKYRl~  210 (339)
                      +-.||+|....++++|.++|..   +..|-+.|  +|-|..+|+.|-..+...
T Consensus        53 ~~~WT~eEd~~L~~~~~~~G~~---W~~Ia~~l--~gRt~~~~k~rw~~l~r~  100 (107)
T 2k9n_A           53 TDPWSPEEDMLLDQKYAEYGPK---WNKISKFL--KNRSDNNIRNRWMMIARH  100 (107)
T ss_dssp             TCCCCHHHHHHHHHHHHHTCSC---HHHHHHHH--SSSCHHHHHHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHHHHhCcC---HHHHHHHC--CCCCHHHHHHHHHHHHhh
Confidence            4589999999999999999963   99999887  789999999886655443

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A

Probab=91.96  E-value=0.43  Score=37.43  Aligned_cols=51  Identities=14%  Similarity=0.190  Sum_probs=42.3

Q ss_pred             ecChHHHHHHHHHHHHhCCCCCChHHHHHhhC--CCCCCHHHHHHHhhhhHHHHhhhc
Q 047187          160 VWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMN--VEGLTRENVASHLQKYRLYLKRMQ  215 (339)
Q Consensus       160 ~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~--V~GLTr~nVkSHLQKYRl~lkR~~  215 (339)
                      .||+|.-+..+++|+++|..+  ++.|++.-.  +++-|-.++|.   |||..+++..
T Consensus         2 ~WT~eEd~~L~~gv~k~G~g~--W~~I~~~~~~~~~~RT~~~lKd---rWrnllk~~~   54 (83)
T 2ckx_A            2 PFSVAEVEALVEAVEHLGTGR--WRDVKMRAFDNADHRTYVDLKD---KWKTLVHTAS   54 (83)
T ss_dssp             CCCHHHHHHHHHHHHHHCSSC--HHHHHHHHCTTCTTSCHHHHHH---HHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCCCC--cHHHHHhhccccCCCCHHHHHH---HHHHHHHhcc
Confidence            499999999999999999633  999998633  58999999995   7888776543

>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1

Probab=89.86  E-value=1.2  Score=33.83  Aligned_cols=53  Identities=17%  Similarity=0.158  Sum_probs=44.2

Q ss_pred             CCCCeecChHHHHHHHHHHHHhCCCCCChHHHHHhhC-CCCCCHHHHHHHhhhhHHHHhh
Q 047187          155 KRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMN-VEGLTRENVASHLQKYRLYLKR  213 (339)
Q Consensus       155 kKpRl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~-V~GLTr~nVkSHLQKYRl~lkR  213 (339)
                      .+.|-.||+|.-+..++.|+++|.   .++.|+.--. .++.|.-+||.   |||...|+
T Consensus         5 ~~~r~~WT~EE~~~L~~gV~k~G~---~W~~I~~~y~f~~~RT~VdLKd---k~r~L~k~   58 (62)
T 1x58_A            5 SSGRKDFTKEEVNYLFHGVKTMGN---HWNSILWSFPFQKGRRAVDLAH---KYHRLISG   58 (62)
T ss_dssp             CCCSSSCCHHHHHHHHHHHHHHCS---CHHHHHHHSCCCTTCCHHHHHH---HHHHHHTC
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHhH---hHHHHHHhCCCccCcccchHHH---HHHHHHhc
Confidence            456888999999999999999996   3999996433 57899999994   89987664

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}

Probab=89.70  E-value=0.73  Score=35.38  Aligned_cols=42  Identities=17%  Similarity=0.150  Sum_probs=37.5

Q ss_pred             CCeecChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHh
Q 047187          157 PRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHL  204 (339)
Q Consensus       157 pRl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTr~nVkSHL  204 (339)
                      .|-.||+|.-+.+++++.++|.+   ++.|-+.|   |-|-.+|+.+-
T Consensus        22 ~k~~wT~EED~~L~~l~~~~G~k---W~~IA~~l---gRt~~q~knRw   63 (73)
T 2llk_A           22 HVGKYTPEEIEKLKELRIKHGND---WATIGAAL---GRSASSVKDRC   63 (73)
T ss_dssp             CCCSSCHHHHHHHHHHHHHHSSC---HHHHHHHH---TSCHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCC---HHHHHHHh---CCCHHHHHHHH
Confidence            45689999999999999999965   99999999   89999998763

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}

Probab=88.94  E-value=0.069  Score=41.75  Aligned_cols=48  Identities=13%  Similarity=0.077  Sum_probs=40.6

Q ss_pred             CeecChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhhHHH
Q 047187          158 RLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLY  210 (339)
Q Consensus       158 Rl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTr~nVkSHLQKYRl~  210 (339)
                      +-.||+|....|+++|..+|.+   +..|-+.|  +|-|..+|+.|-+.|...
T Consensus        16 ~~~WT~eEd~~l~~~~~~~G~~---W~~IA~~l--~gRt~~q~k~r~~~~lrk   63 (89)
T 2ltp_A           16 FQGWTEEEMGTAKKGLLEHGRN---WSAIARMV--GSKTVSQCKNFYFNYKKR   63 (89)
Confidence            5579999999999999999964   88998875  689999999997766543

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A

Probab=89.30  E-value=0.7  Score=35.96  Aligned_cols=46  Identities=17%  Similarity=0.298  Sum_probs=37.9

Q ss_pred             CeecChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhh
Q 047187          158 RLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKY  207 (339)
Q Consensus       158 Rl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTr~nVkSHLQKY  207 (339)
                      +-.||+|.-++++++|+.+|..+  ++.|-+.|  +|.|..+++.+-++|
T Consensus         4 k~~WT~eED~~L~~~v~~~g~~~--W~~Ia~~l--~~Rt~~qcr~Rw~~~   49 (105)
T 1gv2_A            4 KGPWTKEEDQRVIKLVQKYGPKR--WSVIAKHL--KGRIGKQCRERWHNH   49 (105)
T ss_dssp             CSCCCHHHHHHHHHHHHHHCTTC--HHHHHTTS--TTCCHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhCCCc--HHHHhhhh--cCCCHHHHHHHHHhc
Confidence            45799999999999999999643  99999887  689999998654443

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A

Probab=87.97  E-value=1.1  Score=36.31  Aligned_cols=49  Identities=16%  Similarity=0.171  Sum_probs=39.4

Q ss_pred             CCCCCeecChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhh
Q 047187          154 LKRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKY  207 (339)
Q Consensus       154 ~kKpRl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTr~nVkSHLQKY  207 (339)
                      .+..|-.||+|.-++++++|+++|.   -++.|.+.|  ++-|..+++.+-.+|
T Consensus         7 ~~~kk~~WT~eED~~L~~~v~~~G~---~W~~Ia~~~--~~Rt~~qcr~Rw~~~   55 (126)
T 3osg_A            7 KAAKKQKFTPEEDEMLKRAVAQHGS---DWKMIAATF--PNRNARQCRDRWKNY   55 (126)
T ss_dssp             CBCSSCCCCHHHHHHHHHHHHHHTT---CHHHHHHTC--TTCCHHHHHHHHHHH
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCC---CHHHHHHHc--CCCCHHHHHHHHhhh
Confidence            3445778999999999999999996   499998886  468998887654443

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A

Probab=87.27  E-value=1.3  Score=35.86  Aligned_cols=48  Identities=15%  Similarity=0.262  Sum_probs=39.6

Q ss_pred             CeecChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhhHHHHhh
Q 047187          158 RLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKR  213 (339)
Q Consensus       158 Rl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTr~nVkSHLQKYRl~lkR  213 (339)
                      +-.||+|..++++++|.++|..   +..|-+.|  +|-|..+|+.+   |+..++|
T Consensus        62 ~~~WT~eEd~~L~~~v~~~G~~---W~~Ia~~l--~gRt~~~~k~r---w~~l~~k  109 (126)
T 3osg_A           62 HTPWTAEEDALLVQKIQEYGRQ---WAIIAKFF--PGRTDIHIKNR---WVTISNK  109 (126)
T ss_dssp             CSCCCHHHHHHHHHHHHHHCSC---HHHHHTTS--TTCCHHHHHHH---HHHHHHH
T ss_pred             cccCCHHHHHHHHHHHHHHCcC---HHHHHHHc--CCCCHHHHHHH---HHHHHHh
Confidence            3469999999999999999954   99998865  68999999976   5555544

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3

Probab=87.02  E-value=1.5  Score=35.44  Aligned_cols=46  Identities=17%  Similarity=0.296  Sum_probs=37.9

Q ss_pred             CCeecChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhh
Q 047187          157 PRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQK  206 (339)
Q Consensus       157 pRl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTr~nVkSHLQK  206 (339)
                      .+-.||+|.-++++++|+.+|..+  ++.|.+.|  +|-|..+++.+-++
T Consensus        26 ~k~~Wt~eED~~L~~~v~~~g~~~--W~~Ia~~l--~~Rt~~qcr~Rw~~   71 (128)
T 1h8a_C           26 NKGPWTKEEDQRVIEHVQKYGPKR--WSDIAKHL--KGRIGKQCRERWHN   71 (128)
T ss_dssp             CCSCCCHHHHHHHHHHHHHTCSCC--HHHHHHHS--SSCCHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCCC--HHHHHHHh--cCCcHHHHHHHHHH
Confidence            356799999999999999999543  99999987  57999999865443

>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}

Probab=86.83  E-value=0.24  Score=38.99  Aligned_cols=45  Identities=22%  Similarity=0.226  Sum_probs=34.9

Q ss_pred             ecChHHHHHHHHHHHHhCCC-CCChHHHHHhhCCCCCCHHHHHHHhhh
Q 047187          160 VWTPQLHKRFVDVVAHLGIK-NAVPKTIMQLMNVEGLTRENVASHLQK  206 (339)
Q Consensus       160 ~WT~ELH~rFVeAV~qLG~d-kAtPK~ILelM~V~GLTr~nVkSHLQK  206 (339)
                      .||.+-.+.|..|+..+..+ .-.+.+|-+.  |+|-|.++|+.|-|-
T Consensus        22 ~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~--VpGKT~eEVk~hY~~   67 (74)
T 4eef_G           22 PWKFSENIAFEIALSFTNKDTPDRWKKVAQY--VKGRTPEEVKKHYEL   67 (74)
T ss_dssp             CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGG--SCSSCHHHHHGGGC-
T ss_pred             CCCHHHHHHHHHHHHHCCCCCCcHHHHHHHH--cCCCCHHHHHHHHHH
Confidence            59999999999999999733 2346666554  458999999998763

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A

Probab=86.23  E-value=1.6  Score=34.33  Aligned_cols=47  Identities=19%  Similarity=0.244  Sum_probs=37.7

Q ss_pred             eecChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhhHHHHh
Q 047187          159 LVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLK  212 (339)
Q Consensus       159 l~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTr~nVkSHLQKYRl~lk  212 (339)
                      -.||+|.-++++++|+.+|..  .++.|-+.|+  +-|..+++.   .|+.+|.
T Consensus         2 ~~Wt~eED~~L~~~v~~~g~~--~W~~Ia~~~~--~Rt~~qcr~---Rw~~~L~   48 (107)
T 2k9n_A            2 VKFTEEEDLKLQQLVMRYGAK--DWIRISQLMI--TRNPRQCRE---RWNNYIN   48 (107)
T ss_dssp             CSSCHHHHHHHHHHHHHHCSS--CHHHHHHHTT--TSCHHHHHH---HHHHHSS
T ss_pred             CCCCHHHHHHHHHHHHHHCCC--CHHHHhhhcC--CCCHHHHHH---HHHHHHc
Confidence            479999999999999999953  3999999885  789998875   4554443

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3

Probab=85.52  E-value=1.4  Score=35.53  Aligned_cols=42  Identities=24%  Similarity=0.381  Sum_probs=36.9

Q ss_pred             CeecChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHh
Q 047187          158 RLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHL  204 (339)
Q Consensus       158 Rl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTr~nVkSHL  204 (339)
                      +-.||+|..+.++++|.++|.+   +..|-+.|  +|-|..+|+.|-
T Consensus        79 ~~~WT~eEd~~L~~~~~~~G~~---W~~Ia~~l--~gRt~~~~k~r~  120 (128)
T 1h8a_C           79 KTSWTEEEDRIIYQAHKRLGNR---WAEIAKLL--PGRTDNAVKNHW  120 (128)
T ss_dssp             CSCCCHHHHHHHHHHHHHHCSC---HHHHGGGS--TTCCHHHHHHHH
T ss_pred             cccCCHHHHHHHHHHHHHHCcC---HHHHHHHC--CCCCHHHHHHHH
Confidence            5579999999999999999964   99998875  789999999864

>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3

Probab=83.98  E-value=2.7  Score=31.54  Aligned_cols=46  Identities=11%  Similarity=0.075  Sum_probs=35.4

Q ss_pred             CCCCeecChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHh
Q 047187          155 KRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHL  204 (339)
Q Consensus       155 kKpRl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTr~nVkSHL  204 (339)
                      ++..-.||+|.++.|.+|+...|-+   -..|.+.| |+.-|..+|..+-
T Consensus         5 r~~~~~WT~eE~~~Fe~~l~~yGKd---f~~I~~~~-v~~Kt~~~~v~fY   50 (70)
T 2crg_A            5 SSGMEEWSASEACLFEEALEKYGKD---FNDIRQDF-LPWKSLTSIIEYY   50 (70)
T ss_dssp             CCSSCCCCHHHHHHHHHHHHHTCSC---HHHHHHTT-CSSSCHHHHHHHH
T ss_pred             ccCCCCCCHHHHHHHHHHHHHhCcc---HHHHHHHH-cCCCCHHHHHHHH
Confidence            4566789999999999999999955   77786521 5568888876543

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C

Probab=82.72  E-value=2.2  Score=35.57  Aligned_cols=44  Identities=20%  Similarity=0.362  Sum_probs=37.8

Q ss_pred             CCeecChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhh
Q 047187          157 PRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQ  205 (339)
Q Consensus       157 pRl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTr~nVkSHLQ  205 (339)
                      .+-.||+|..+.+++++.++|..   +..|.+.|  +|-|..+|+.|-.
T Consensus       109 ~~~~WT~eEd~~L~~~~~~~g~~---W~~Ia~~l--~gRt~~~~knr~~  152 (159)
T 1h89_C          109 KKTSWTEEEDRIIYQAHKRLGNR---WAEIAKLL--PGRTDNAIKNHWN  152 (159)
T ss_dssp             CCSCCCHHHHHHHHHHHHHHCSC---HHHHHTTS--TTCCHHHHHHHHH
T ss_pred             cccCCChHHHHHHHHHHHHHCCC---HHHHHHHC--CCCCHHHHHHHHH
Confidence            35679999999999999999964   99998864  7999999998743

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C

Probab=81.67  E-value=3.1  Score=34.60  Aligned_cols=47  Identities=17%  Similarity=0.273  Sum_probs=38.6

Q ss_pred             CCeecChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhh
Q 047187          157 PRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKY  207 (339)
Q Consensus       157 pRl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTr~nVkSHLQKY  207 (339)
                      .+-.||+|.-++++++|+.+|..+  ++.|.+.|  +|.|..+++.+-+.|
T Consensus        57 ~~~~Wt~eEd~~L~~~v~~~g~~~--W~~Ia~~l--~~Rt~~qcr~Rw~~~  103 (159)
T 1h89_C           57 IKGPWTKEEDQRVIKLVQKYGPKR--WSVIAKHL--KGRIGKQCRERWHNH  103 (159)
T ss_dssp             CCSCCCHHHHHHHHHHHHHHCSCC--HHHHHHTS--TTCCHHHHHHHHHHT
T ss_pred             CCCCCChHHHHHHHHHHHHhCccc--HHHHHHHc--CCCCHHHHHHHHHHH
Confidence            356899999999999999999533  89998887  689999998754443

>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=81.33  E-value=2.7  Score=32.51  Aligned_cols=45  Identities=11%  Similarity=0.116  Sum_probs=34.6

Q ss_pred             ecChHHHHHHHHHHHHhCCC-CCChHHHHHhhCCCCCCHHHHHHHhhh
Q 047187          160 VWTPQLHKRFVDVVAHLGIK-NAVPKTIMQLMNVEGLTRENVASHLQK  206 (339)
Q Consensus       160 ~WT~ELH~rFVeAV~qLG~d-kAtPK~ILelM~V~GLTr~nVkSHLQK  206 (339)
                      .||.+-.++|.+|+..++.+ .-.+.+|-+.  |+|-|.++|..|-+.
T Consensus        10 ~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~--V~gKT~eE~~~hY~~   55 (73)
T 1wgx_A           10 EWNEKELQKLHCAFASLPKHKPGFWSEVAAA--VGSRSPEECQRKYME   55 (73)
T ss_dssp             CCCHHHHHHHHHHHHHSCSSSSSHHHHHHHH--TTTSCHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHCCCCCccHHHHHHHH--cCCCCHHHHHHHHHH
Confidence            59999999999999999843 2346667665  467999999866443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	339
d1irza_	64	a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis th	7e-28

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 64

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  101 bits (253), Expect = 7e-28
 Identities = 36/60 (60%), Positives = 50/60 (83%)

Query: 155 KRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRM 214
           K+PR++WT +LH +F+  V HLG++ AVPK I+ LMNV+ LTRENVASHLQK+R+ LK++
Sbjct: 4   KKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRVALKKV 63

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	339
d1irza_	64	Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId	99.94
d2cu7a1	65	MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960	97.38
d1x41a1	47	Transcriptional adaptor 2-like, TADA2L, isoform b	97.01
d2iw5b1	65	REST corepressor 1, CoREST {Human (Homo sapiens) [	96.0
d1w0ua_	55	Telomeric repeat binding factor 2, TRF2 {Human (Ho	95.45
d1xc5a1	68	Nuclear receptor corepressor 2 {Human (Homo sapien	95.44
d2cjja1	63	Radialis {Garden snapdragon (Antirrhinum majus) [T	95.38
d1guua_	50	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	95.37
d2cqra1	60	DnaJ homolog subfamily C member 1 {Human (Homo sap	91.99
d1w0ta_	52	DNA-binding domain of human telomeric protein, hTR	91.91
d1gvda_	52	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	91.45
d2cqqa1	59	DnaJ homolog subfamily C member 1 {Human (Homo sap	91.45
d2crga1	57	Metastasis associated protein MTA3 {Mouse (Mus mus	91.34
d2ckxa1	83	Telomere binding protein TBP1 {Tobacco (Nicotiana	90.68
d1gv2a2	47	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	90.17
d1wh7a_	80	ZF-HD homeobox protein At4g24660 {Thale cress (Ara	80.37

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.94  E-value=3.7e-28  Score=183.48  Aligned_cols=62  Identities=58%  Similarity=1.017  Sum_probs=59.8

Q ss_pred             CCCCCCeecChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhhHHHHhhh
Q 047187          153 TLKRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRM  214 (339)
Q Consensus       153 ~~kKpRl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTr~nVkSHLQKYRl~lkR~  214 (339)
                      ..||+|++||+|||++||+||++||.++|+||+|+++|+|++||++||+|||||||++++|+
T Consensus         2 ~~kk~R~~WT~elH~~Fv~Av~~lG~~~atpk~I~~~m~v~~lT~~qV~SHlQKYrl~l~k~   63 (64)
T d1irza_           2 AQKKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRVALKKV   63 (64)
T ss_dssp             CCCCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHSC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCccccchHHHHHHcCCCCCCHHHHHHHHHHHHHHHHhc
Confidence            47899999999999999999999999999999999999999999999999999999999875

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.38  E-value=0.00033  Score=49.64  Aligned_cols=51  Identities=22%  Similarity=0.240  Sum_probs=44.3

Q ss_pred             CeecChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhhHHHHhh
Q 047187          158 RLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKR  213 (339)
Q Consensus       158 Rl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTr~nVkSHLQKYRl~lkR  213 (339)
                      .++||+|..+.|++||.++|.+   +..|-++|+  +-|..+|++|-++|.....+
T Consensus         2 ~~~WT~eEd~~l~~~~~~~G~~---W~~Ia~~~~--~Rt~~q~k~ry~~~~~~~~k   52 (65)
T d2cu7a1           2 SVKWTIEEKELFEQGLAKFGRR---WTKISKLIG--SRTVLQVKSYARQYFKNKVK   52 (65)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCSC---HHHHHHHHS--SSCHHHHHHHHHHHHHHHSC
T ss_pred             CCCCCHHHHHHHHHHHHHhcch---HHHHHHHcC--CCCHHHHHHHHHHHHHHHHh
Confidence            3679999999999999999953   999998875  79999999999998776543

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.01  E-value=0.00072  Score=46.07  Aligned_cols=45  Identities=27%  Similarity=0.392  Sum_probs=40.4

Q ss_pred             ecChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhhH
Q 047187          160 VWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYR  208 (339)
Q Consensus       160 ~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTr~nVkSHLQKYR  208 (339)
                      .||.|...+|++||.++|..+  ++.|-+.|+  +-|..|++.|-+||.
T Consensus         3 ~Wt~eEd~~L~~~v~~~G~~n--W~~Ia~~~~--~Rt~~Qcr~r~~~~f   47 (47)
T d1x41a1           3 SWTAQEEMALLEAVMDCGFGN--WQDVANQMC--TKTKEECEKHYMKYF   47 (47)
T ss_dssp             SSCHHHHHHHHHHHHHTCTTC--HHHHHHHHT--TSCHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHHCCcc--HHHHHHHcC--CCCHHHHHHHHHHhC
Confidence            399999999999999999544  999999987  689999999999984

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.00  E-value=0.0061  Score=43.11  Aligned_cols=51  Identities=16%  Similarity=0.238  Sum_probs=43.6

Q ss_pred             CCCCeecChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhhHHH
Q 047187          155 KRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLY  210 (339)
Q Consensus       155 kKpRl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTr~nVkSHLQKYRl~  210 (339)
                      +|.+-.||++...+|++++..+|.+   ...|-++|  ++-|..+|+.+-.+|+..
T Consensus         2 ~k~~~~WT~eE~~~f~~~~~~~G~~---w~~Ia~~~--~~kt~~q~~~~y~~~~k~   52 (65)
T d2iw5b1           2 QKCNARWTTEEQLLAVQAIRKYGRD---FQAISDVI--GNKSVVQVKNFFVNYRRR   52 (65)
T ss_dssp             CCCCSSCCHHHHHHHHHHHHHHSSC---HHHHHHHH--SSCCHHHHHHHHHHTTTT
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhCch---HHHHHHHc--CCCCHHHHHHHHHHHHhh
Confidence            4556679999999999999999965   99999987  479999999998887643

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.45  E-value=0.023  Score=39.35  Aligned_cols=50  Identities=16%  Similarity=0.145  Sum_probs=42.4

Q ss_pred             CeecChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhhHHHHh
Q 047187          158 RLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLK  212 (339)
Q Consensus       158 Rl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTr~nVkSHLQKYRl~lk  212 (339)
                      |-.||+|.-++++++|++.|..+  ++.|.+.+...+-|..+++   .+||..++
T Consensus         2 r~~WT~eEd~~L~~~V~~~G~~~--W~~I~~~~~~~~Rt~~q~k---~Rwrn~~k   51 (55)
T d1w0ua_           2 KQKWTVEESEWVKAGVQKYGEGN--WAAISKNYPFVNRTAVMIK---DRWRTMKR   51 (55)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCTTC--HHHHHHHSCCSSCCHHHHH---HHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCCCh--HHHHHhhcCCCCcCHHHHH---HHHHHHhc
Confidence            45799999999999999999543  9999998877889999987   57777655

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.44  E-value=0.015  Score=41.51  Aligned_cols=46  Identities=13%  Similarity=0.101  Sum_probs=38.5

Q ss_pred             CCCCCeecChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHh
Q 047187          154 LKRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHL  204 (339)
Q Consensus       154 ~kKpRl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTr~nVkSHL  204 (339)
                      .++..-.||+|..++|++||.++|-+   ...|-++|  ++-|..+|+.|-
T Consensus        13 ~~~~~~~WT~eE~~~f~~~~~~~G~~---w~~Ia~~~--~~rt~~q~~~~y   58 (68)
T d1xc5a1          13 DRQVMNMWSEQEKETFREKFMQHPKN---FGLIASFL--ERKTVAECVLYY   58 (68)
T ss_dssp             STTTTTCCCTTTHHHHHHHHHHTTSC---SSSHHHHT--TTSCHHHHHHHH
T ss_pred             cccCCCCCCHHHHHHHHHHHHHHCCc---HHHHHHHc--CCCCHHHHHHHH
Confidence            34455679999999999999999954   88898875  689999999984

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

Probab=95.38  E-value=0.019  Score=40.46  Aligned_cols=52  Identities=19%  Similarity=0.227  Sum_probs=41.8

Q ss_pred             ecChHHHHHHHHHHHHhCCC-CCChHHHHHhhCCCCCCHHHHHHHhhhhHHHHhh
Q 047187          160 VWTPQLHKRFVDVVAHLGIK-NAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKR  213 (339)
Q Consensus       160 ~WT~ELH~rFVeAV~qLG~d-kAtPK~ILelM~V~GLTr~nVkSHLQKYRl~lkR  213 (339)
                      .||+|..++|++||.++|.. ...+++|-+.|.  |-|..||+.|-++-...+++
T Consensus         3 ~WT~eEd~~L~~~v~~~~~~~~~~W~~Ia~~l~--gRt~~qc~~r~~~L~~dik~   55 (63)
T d2cjja1           3 PWSAKENKAFERALAVYDKDTPDRWANVARAVE--GRTPEEVKKHYEILVEDIKY   55 (63)
T ss_dssp             SCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHST--TCCHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCCCCchHHHHHHHHcC--CCCHHHHHHHHHHHHHHhhc
Confidence            49999999999999999953 346999998885  79999999987554444444

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.37  E-value=0.018  Score=39.11  Aligned_cols=46  Identities=20%  Similarity=0.286  Sum_probs=38.9

Q ss_pred             CeecChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhh
Q 047187          158 RLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKY  207 (339)
Q Consensus       158 Rl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTr~nVkSHLQKY  207 (339)
                      |-.||+|..++++++|+++|..+  ++.|-++|  +|-|-.|++.+=++|
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~--W~~Ia~~~--~~Rt~~qcr~Rw~~~   46 (50)
T d1guua_           1 KTRWTREEDEKLKKLVEQNGTDD--WKVIANYL--PNRTDVQCQHRWQKV   46 (50)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCSSC--HHHHHHTS--TTCCHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCC--HHHHHHHH--CCCCHHHHHHHHHhh
Confidence            45799999999999999999544  99999987  589999998775554

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.99  E-value=0.095  Score=36.31  Aligned_cols=49  Identities=10%  Similarity=0.149  Sum_probs=37.7

Q ss_pred             CCCCeecChHHHHHHHHHHHHhCCCC-CChHHHHHhhCCCCCCHHHHHHHhh
Q 047187          155 KRPRLVWTPQLHKRFVDVVAHLGIKN-AVPKTIMQLMNVEGLTRENVASHLQ  205 (339)
Q Consensus       155 kKpRl~WT~ELH~rFVeAV~qLG~dk-AtPK~ILelM~V~GLTr~nVkSHLQ  205 (339)
                      +..+-.||+|..++|++||..+|... --+++|-+.|  +|-|..++..|-+
T Consensus         9 ~~~~~~WT~eEd~~L~~~v~~~~~~~~~~W~~IA~~l--~~Rt~~qc~~R~~   58 (60)
T d2cqra1           9 RSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCV--PSKSKEDCIARYK   58 (60)
T ss_dssp             TCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGC--SSSCHHHHHHHHH
T ss_pred             CcCCCCcCHHHHHHHHHHHHHcCCccchHHHHHHHHc--CCCCHHHHHHHHH
Confidence            33455699999999999999999432 2378887765  5899999987653

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.91  E-value=0.26  Score=33.44  Aligned_cols=48  Identities=19%  Similarity=0.207  Sum_probs=39.5

Q ss_pred             CeecChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhhHHH
Q 047187          158 RLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLY  210 (339)
Q Consensus       158 Rl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTr~nVkSHLQKYRl~  210 (339)
                      |-.||+|.-...+++|++.|..+  ++.|.+.....+-|..+++-   +||..
T Consensus         2 r~~WT~eED~~L~~~v~~~G~~~--W~~I~~~~~~~~Rt~~q~r~---Rw~nl   49 (52)
T d1w0ta_           2 RQAWLWEEDKNLRSGVRKYGEGN--WSKILLHYKFNNRTSVMLKD---RWRTM   49 (52)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCTTC--HHHHHHHSCCSSCCHHHHHH---HHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCC--HHHHHhhcCCCCCCHHHHHH---HHHHH
Confidence            44799999999999999999643  99999887777899999874   55543

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.45  E-value=0.19  Score=34.21  Aligned_cols=46  Identities=17%  Similarity=0.312  Sum_probs=38.8

Q ss_pred             CeecChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhh
Q 047187          158 RLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKY  207 (339)
Q Consensus       158 Rl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTr~nVkSHLQKY  207 (339)
                      |-.||+|.-++.+++|+++|..+  ++.|-+.|  ++-|..|++.+=++|
T Consensus         3 rg~WT~eED~~L~~~v~~~g~~~--W~~Ia~~l--~~Rt~~qc~~Rw~~~   48 (52)
T d1gvda_           3 KGPWTKEEDQRLIKLVQKYGPKR--WSVIAKHL--KGRIGKQCRERWHNH   48 (52)
T ss_dssp             CCSCCHHHHHHHHHHHHHHCTTC--HHHHHTTS--TTCCHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCC--HHHHHHHH--CCCCHHHHHHHHHhh
Confidence            45699999999999999999544  99999887  589999998766554

>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.45  E-value=0.15  Score=36.32  Aligned_cols=50  Identities=10%  Similarity=0.147  Sum_probs=41.1

Q ss_pred             ecChHHHHHHHHHHHHhCC-CCCChHHHHHhhCCCCCCHHHHHHHhhhhHHHHh
Q 047187          160 VWTPQLHKRFVDVVAHLGI-KNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLK  212 (339)
Q Consensus       160 ~WT~ELH~rFVeAV~qLG~-dkAtPK~ILelM~V~GLTr~nVkSHLQKYRl~lk  212 (339)
                      .||.+-.+.|..|+.++-. ..-.+.+|-+.|   |-|.++|..+.++.+..+.
T Consensus         3 eWT~ee~~~le~Al~~~P~gt~~RW~~IA~~v---gkt~~ev~~~~k~l~e~~~   53 (59)
T d2cqqa1           3 EWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL---GRSVTDVTTKAKQLKDSVT   53 (59)
T ss_dssp             CCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH---TSCHHHHHHHHHHHHHSCC
T ss_pred             CCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHH---CCCHHHHHHHHHHHHHhcc
Confidence            6999999999999999973 234588999998   5899999988877766543

>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Metastasis associated protein MTA3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.34  E-value=0.24  Score=34.38  Aligned_cols=41  Identities=12%  Similarity=0.134  Sum_probs=34.3

Q ss_pred             ecChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHh
Q 047187          160 VWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHL  204 (339)
Q Consensus       160 ~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTr~nVkSHL  204 (339)
                      .||+|.++.|++|+.+.|-+   ...|-+.| |++-|..+|.+|-
T Consensus         3 ~WT~eE~~~F~~~~~~yGKd---f~~I~~~~-v~~Ks~~~~v~fY   43 (57)
T d2crga1           3 EWSASEACLFEEALEKYGKD---FNDIRQDF-LPWKSLTSIIEYY   43 (57)
T ss_dssp             CCCHHHHHHHHHHHHHTCSC---HHHHHHTT-CSSSCHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHccc---HHHHHHHH-cCCCCHHHHHHHH
Confidence            59999999999999999965   77786533 3568999999885

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=90.68  E-value=0.31  Score=35.78  Aligned_cols=49  Identities=14%  Similarity=0.204  Sum_probs=42.1

Q ss_pred             ecChHHHHHHHHHHHHhCCCCCChHHHHHhhC--CCCCCHHHHHHHhhhhHHHHhh
Q 047187          160 VWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMN--VEGLTRENVASHLQKYRLYLKR  213 (339)
Q Consensus       160 ~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~--V~GLTr~nVkSHLQKYRl~lkR  213 (339)
                      .||.|.-++.+++|+.+|..+  +..|.+.|.  +++-|..+++   +|||..|+.
T Consensus         2 ~WT~eEd~~L~~~V~~~G~~~--W~~I~~~~~~~~~~Rt~~qck---~RWrn~l~~   52 (83)
T d2ckxa1           2 PFSVAEVEALVEAVEHLGTGR--WRDVKMRAFDNADHRTYVDLK---DKWKTLVHT   52 (83)
T ss_dssp             CCCHHHHHHHHHHHHHHCSSC--HHHHHHHHCTTCTTSCHHHHH---HHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCccc--HHHHHHHHHhhccCCCHHHHH---HHHHHHhhh
Confidence            499999999999999999643  999999885  5788999998   588888764

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.17  E-value=0.28  Score=32.82  Aligned_cols=42  Identities=21%  Similarity=0.374  Sum_probs=36.4

Q ss_pred             ecChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhh
Q 047187          160 VWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQK  206 (339)
Q Consensus       160 ~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTr~nVkSHLQK  206 (339)
                      .||+|.-+.++++|+++|-+   +..|-+.|  +|-|..+|+.+-..
T Consensus         3 ~WT~eED~~L~~~v~~~G~~---W~~Ia~~~--~gRt~~~~knr~~~   44 (47)
T d1gv2a2           3 SWTEEEDRIIYQAHKRLGNR---WAEIAKLL--PGRTDNAIKNHWNS   44 (47)
T ss_dssp             CCCHHHHHHHHHHHHHHSSC---HHHHHTTC--TTCCHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHhhH---HHHHHhHc--CCCCHHHHHHHHHH
Confidence            59999999999999999964   99998765  78999999987544

>d1wh7a_ a.4.1.1 (A:) ZF-HD homeobox protein At4g24660 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: ZF-HD homeobox protein At4g24660
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=80.37  E-value=1.7  Score=31.52  Aligned_cols=62  Identities=16%  Similarity=0.201  Sum_probs=48.0

Q ss_pred             ccCCCCCCeecChHHHHHHHHHHHHhCC--CCCChHHHHHhhCCCCCCHHHHHHHhhhhHHHHh
Q 047187          151 ARTLKRPRLVWTPQLHKRFVDVVAHLGI--KNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLK  212 (339)
Q Consensus       151 ~~~~kKpRl~WT~ELH~rFVeAV~qLG~--dkAtPK~ILelM~V~GLTr~nVkSHLQKYRl~lk  212 (339)
                      ....||.|.+.|++--+..-..+++++.  .......|.+|...-||+..+|+.=.|.-|...|
T Consensus        14 ~~~~kR~Rt~ft~~Q~~~L~~~fe~~~~~~~~p~~~~~~~la~~~gl~~~~i~vWFqN~R~~~k   77 (80)
T d1wh7a_          14 GGTTKRFRTKFTAEQKEKMLAFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGP   77 (80)
T ss_dssp             CCCSSCCCCCCCHHHHHHHHHHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCCSC
T ss_pred             ccCCCCccccCCHHHHHHHHHHHHHhcccccCcCHHHHHHHHHHHCCCHHHeeeecccCcCCCC
Confidence            3456789999999988877788888883  3445677888888889999999988887665443