Citrus Sinensis ID: 047227
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 485 | 2.2.26 [Sep-21-2011] | |||||||
| Q67ZE1 | 564 | 3beta-hydroxysteroid-dehy | yes | no | 0.991 | 0.852 | 0.738 | 0.0 | |
| Q9FX01 | 439 | 3beta-hydroxysteroid-dehy | no | no | 0.892 | 0.986 | 0.696 | 0.0 | |
| A9X4U2 | 561 | 3beta-hydroxysteroid-dehy | no | no | 0.975 | 0.843 | 0.414 | 1e-102 | |
| Q9R1J0 | 362 | Sterol-4-alpha-carboxylat | yes | no | 0.688 | 0.922 | 0.401 | 2e-66 | |
| Q15738 | 373 | Sterol-4-alpha-carboxylat | yes | no | 0.692 | 0.900 | 0.405 | 3e-65 | |
| Q3ZBE9 | 356 | Sterol-4-alpha-carboxylat | yes | no | 0.684 | 0.932 | 0.395 | 2e-64 | |
| Q5PPL3 | 362 | Sterol-4-alpha-carboxylat | yes | no | 0.688 | 0.922 | 0.404 | 3e-64 | |
| O43050 | 340 | Sterol-4-alpha-carboxylat | yes | no | 0.663 | 0.947 | 0.363 | 2e-47 | |
| P53199 | 349 | Sterol-4-alpha-carboxylat | yes | no | 0.674 | 0.936 | 0.344 | 4e-47 | |
| A8DZE7 | 387 | Short-chain dehydrogenase | no | no | 0.647 | 0.811 | 0.347 | 2e-44 |
| >sp|Q67ZE1|HSDD2_ARATH 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2 OS=Arabidopsis thaliana GN=3BETAHSD/D2 PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 759 bits (1961), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/481 (73%), Positives = 414/481 (86%)
Query: 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRA 64
E ER CVVTGGRGFAARHLVEML+RY+MF VRIADL+ +I L+P E G+L E LRSGR
Sbjct: 7 ETERWCVVTGGRGFAARHLVEMLVRYEMFCVRIADLAPAIMLDPQEGNGVLDEGLRSGRV 66
Query: 65 HYVSFDLRHKAQVLQALQGAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVK 124
Y+S DLR K+QV++A QGAEVVFHMAAP+SSINNH+L +SVNV+GT+NVIDAC ++ VK
Sbjct: 67 QYISADLRDKSQVVKAFQGAEVVFHMAAPDSSINNHQLQYSVNVQGTQNVIDACVDVGVK 126
Query: 125 RLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANGTNGLLTCCI 184
RLIYTSSPSVVFDGVHGI+NG E++ YP KHND YSATKAEGE L++KANG NGLLTCCI
Sbjct: 127 RLIYTSSPSVVFDGVHGILNGTESMAYPIKHNDSYSATKAEGEELIMKANGRNGLLTCCI 186
Query: 185 RPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICAERALASEV 244
RPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNN+YDFTYV NVAHAH+CAERALAS
Sbjct: 187 RPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNLYDFTYVENVAHAHVCAERALASGG 246
Query: 245 TVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELTYRLL 304
V+ KAAGQAYF+TNME IKFWEF+S +L+GLGY+RP IKIPAF+MMPIAH+VELTY++L
Sbjct: 247 DVSTKAAGQAYFITNMEPIKFWEFMSQLLDGLGYERPSIKIPAFIMMPIAHLVELTYKVL 306
Query: 305 GPYGMKVPQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSYSHLRAENQ 364
GPYGM VPQLTPSRVRLLSCSRTFD +KAKD LGY P+VPL+EGI+RT+DS+SHL A +Q
Sbjct: 307 GPYGMTVPQLTPSRVRLLSCSRTFDSTKAKDRLGYAPVVPLQEGIRRTIDSFSHLTAGSQ 366
Query: 365 LKRVGPSKASVLLGSGRVADTLLWKDKKWTLTAVLILVAIYYIFIVPGYTIITAFSKLLL 424
KR GPSKAS +LG G+VADTLLWKD K TL A+ IL++IYY F+ G T++TA SK LL
Sbjct: 367 SKREGPSKASRILGGGKVADTLLWKDLKQTLIAIFILISIYYNFVATGSTVVTALSKALL 426
Query: 425 LMLIFLVIHSFLPEKIFGYTLEKIPASSFHLSDEKSLRLAHSVASSWNTSITVLKSLSKG 484
+ +FL +H LPEKIFGYT+EKIPAS FHLS + S L+ SV SSWNT++ L+SL +G
Sbjct: 427 VASVFLFLHGILPEKIFGYTVEKIPASQFHLSKDSSHDLSLSVISSWNTTVKALRSLCQG 486
Query: 485 N 485
N
Sbjct: 487 N 487
|
Arabidopsis thaliana (taxid: 3702) EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 7EC: 0 |
| >sp|Q9FX01|HSDD1_ARATH 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 1 OS=Arabidopsis thaliana GN=3BETAHSD/D1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 649 bits (1674), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 314/451 (69%), Positives = 366/451 (81%), Gaps = 18/451 (3%)
Query: 1 MSGEENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALR 60
M E ER CVVTGGRGFAARHLVEML+RY MF VRIADL+ +I L PHEE GILGEA+R
Sbjct: 3 MEVTETERWCVVTGGRGFAARHLVEMLVRYQMFHVRIADLAPAIVLNPHEETGILGEAIR 62
Query: 61 SGRAHYVSFDLRHKAQVLQALQGAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAE 120
SGR YVS DLR+K QV++ QGAEVVFHMAAP+SSINNH+L +SVNV+GT NVIDAC E
Sbjct: 63 SGRVQYVSADLRNKTQVVKGFQGAEVVFHMAAPDSSINNHQLQYSVNVQGTTNVIDACIE 122
Query: 121 LKVKRLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANGTNGLL 180
+ VKRLIYTSSPSVVFDGVHG +N +E+LPYPPKHND YSATKAEGEAL++KANG +GLL
Sbjct: 123 VGVKRLIYTSSPSVVFDGVHGTLNADESLPYPPKHNDSYSATKAEGEALILKANGRSGLL 182
Query: 181 TCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICAERAL 240
TCCIRPSSIFGPGD+L+VPSLV AARAGKSKFIIGDG+N YDFTYV NV HAH+CAERAL
Sbjct: 183 TCCIRPSSIFGPGDKLMVPSLVTAARAGKSKFIIGDGSNFYDFTYVENVVHAHVCAERAL 242
Query: 241 ASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELT 300
AS V KAAGQAYF+TNME IKFWEF+S +LEGLGY+RP IKIPA +MMPIA++VEL
Sbjct: 243 ASGGEVCAKAAGQAYFITNMEPIKFWEFMSQLLEGLGYERPSIKIPASLMMPIAYLVELA 302
Query: 301 YRLLGPYGMKVPQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSYSHLR 360
Y+LLGPYGMKVP LTPSRVRLLSC+RTFD SKAKD LGY P+VPL+EGIKRT+DS+SHL+
Sbjct: 303 YKLLGPYGMKVPVLTPSRVRLLSCNRTFDSSKAKDRLGYSPVVPLQEGIKRTIDSFSHLK 362
Query: 361 AENQLKRVGPSKASVLLGSGRVADTLLWKDKKWTLTAVLILVAIYYIFIV---PGYTIIT 417
A+NQ K V +T+ W KK TL A++IL+ +Y+ F+ IIT
Sbjct: 363 AQNQPKT-------------EVTETIQW--KKQTLIAIVILITLYHNFVATTGSSSVIIT 407
Query: 418 AFSKLLLLMLIFLVIHSFLPEKIFGYTLEKI 448
A SK+LL+ IF+ I+ LPEK+ + +KI
Sbjct: 408 AVSKVLLVSSIFMFINGILPEKMKVFGSKKI 438
|
Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 7 EC: 0 |
| >sp|A9X4U2|HSDD3_ARATH 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 3 OS=Arabidopsis thaliana GN=3BETAHSD/D3 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 371 bits (953), Expect = e-102, Method: Compositional matrix adjust.
Identities = 200/483 (41%), Positives = 295/483 (61%), Gaps = 10/483 (2%)
Query: 3 GEENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSG 62
G+ + + CVV GGRGF R LV L+R ++VR+AD ++ L+ E +L +AL SG
Sbjct: 8 GDSHLKTCVVLGGRGFIGRSLVSRLLRLGNWTVRVADSGHTLHLD--ESDSLLEDALSSG 65
Query: 63 RAHYVSFDLRHKAQVLQALQGAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELK 122
RA Y D+R K Q+++ +G+ VVF+M A + +++ + V V+GT+NVI AC E
Sbjct: 66 RASYHCVDVRDKPQIVKVTEGSYVVFYMGATDLRSHDYFDCYKVIVQGTRNVISACRESG 125
Query: 123 VKRLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANGTNGLLTC 182
V++LIY S+ VVFDG I +G+E+L P K + KA+ EAL+ AN +GLLTC
Sbjct: 126 VRKLIYNSTADVVFDGSQPIRDGDESLRRPLKFQSMLTDFKAQAEALIKLANNRDGLLTC 185
Query: 183 CIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICAERALAS 242
+R S +FGPGD VP LV A++G +KFI+G G N+ DFTY NV+HAHICA +AL S
Sbjct: 186 ALRSSIVFGPGDTEFVPFLVNLAKSGYAKFILGSGENISDFTYSENVSHAHICAVKALDS 245
Query: 243 EVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELTYR 302
++ E AG+ +F+TN++ ++FW+FVS I+EGLGY RP IK+P +++ + +++ T+
Sbjct: 246 QM---EFVAGKEFFITNLKPVRFWDFVSHIVEGLGYPRPSIKLPVRLVLYVFSLLKWTHE 302
Query: 303 LLGPYGMKVPQLTPSRVRLL-SCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSYSHLRA 361
G+ T + LL S +RTF+C+ AK LGY P+V LE+GI T+ +S
Sbjct: 303 ---KEGLGSNYDTAHQYALLASSTRTFNCNAAKKHLGYTPVVTLEDGIASTLQWFSR-DL 358
Query: 362 ENQLKRVGPSKASVLLGSGRVADTLLWKDKKWTLTAVLILVAIYYIFIVPGYTIITAFSK 421
E + S A LLG G+VAD LLW+++K T + L+L YY F G T ++ ++
Sbjct: 359 EKSDDTIIQSTADQLLGCGKVADILLWRNEKKTFVSFLVLNLFYYWFFFSGNTFTSSAAQ 418
Query: 422 LLLLMLIFLVIHSFLPEKIFGYTLEKIPASSFHLSDEKSLRLAHSVASSWNTSITVLKSL 481
LL + + L SF+P KIFG+ + KIP F +S+ L+ + WN + KSL
Sbjct: 419 LLFIFAVALYGVSFVPSKIFGFQVNKIPPWRFEISESAVRDLSSDIVVVWNQGVRSFKSL 478
Query: 482 SKG 484
S G
Sbjct: 479 SSG 481
|
Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 7 EC: 0 |
| >sp|Q9R1J0|NSDHL_MOUSE Sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating OS=Mus musculus GN=Nsdhl PE=2 SV=1 | Back alignment and function description |
|---|
Score = 253 bits (647), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 143/356 (40%), Positives = 197/356 (55%), Gaps = 22/356 (6%)
Query: 8 RLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYV 67
+ C V GG GF +H+VE L+ ++V + D+ + + R +
Sbjct: 27 KKCTVIGGSGFLGQHMVEQLLERG-YTVNVFDIH---------------QGFDNPRVQFF 70
Query: 68 SFDLRHKAQVLQALQGAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLI 127
DL ++ + AL+G VFH A+P NN +L + VN GTK VI+ C E V++LI
Sbjct: 71 IGDLCNQQDLYPALKGVSTVFHCASPPPYSNNKELFYRVNFIGTKTVIETCREAGVQKLI 130
Query: 128 YTSSPSVVFDGVHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANG-TNGLLTCCIRP 186
TSS SVVF+GV I NG E LPY K D+Y+ TK E V+ AN LT IRP
Sbjct: 131 LTSSASVVFEGV-DIKNGTEDLPYAMKPIDYYTETKILQERAVLDANDPKKNFLTAAIRP 189
Query: 187 SSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICAERALASEVTV 246
IFGP D LVP L+ AAR GK KF+IG+G N+ DFT+V NV H HI A L+ + +
Sbjct: 190 HGIFGPRDPQLVPILIDAARKGKMKFMIGNGENLVDFTFVENVVHGHILAAEHLSQDAAL 249
Query: 247 AEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELTYRLLGP 306
G+A+ +TN E I FW F+S IL GL Y+ P+ IP ++ +A ++ L ++ P
Sbjct: 250 G----GKAFHITNDEPIPFWTFLSRILTGLNYEAPKYHIPYWMAYYLAFLLSLLVMVVSP 305
Query: 307 YGMKVPQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSYSHLRAE 362
P TP RV L + C KAK L GY P+V ++E ++RTV S+ HLR +
Sbjct: 306 LIQIQPTFTPIRVALAGTFHYYSCEKAKKLFGYRPLVTMDEAVERTVQSFHHLRKD 361
|
Mus musculus (taxid: 10090) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 7 EC: 0 |
| >sp|Q15738|NSDHL_HUMAN Sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating OS=Homo sapiens GN=NSDHL PE=1 SV=2 | Back alignment and function description |
|---|
Score = 249 bits (636), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 145/358 (40%), Positives = 201/358 (56%), Gaps = 22/358 (6%)
Query: 4 EENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGR 63
+ + C V GG GF +H+VE L+ ++V + D+ +QG +R
Sbjct: 34 QNQAKRCTVIGGSGFLGQHMVEQLLARG-YAVNVFDI----------QQGFDNPQVR--- 79
Query: 64 AHYVSFDLRHKAQVLQALQGAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKV 123
+ DL + + AL+G VFH A+P S NN +L + VN GTKNVI+ C E V
Sbjct: 80 --FFLGDLCSRQDLYPALKGVNTVFHCASPPPSSNNKELFYRVNYIGTKNVIETCKEAGV 137
Query: 124 KRLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANG-TNGLLTC 182
++LI TSS SV+F+GV I NG E LPY K D+Y+ TK E V+ AN LT
Sbjct: 138 QKLILTSSASVIFEGVD-IKNGTEDLPYAMKPIDYYTETKILQERAVLGANDPEKNFLTT 196
Query: 183 CIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICAERALAS 242
IRP IFGP D LVP L+ AAR GK KF+IG+G N+ DFT+V NV H HI A L+
Sbjct: 197 AIRPHGIFGPRDPQLVPILIEAARNGKMKFVIGNGKNLVDFTFVENVVHGHILAAEQLSR 256
Query: 243 EVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELTYR 302
+ T+ G+A+ +TN E I FW F+S IL GL Y+ P+ IP +V +A ++ L
Sbjct: 257 DSTLG----GKAFHITNDEPIPFWTFLSRILTGLNYEAPKYHIPYWVAYYLALLLSLLVM 312
Query: 303 LLGPYGMKVPQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSYSHLR 360
++ P P TP RV L + C +AK +GY P+V +++ ++RTV S+ HLR
Sbjct: 313 VISPVIQLQPTFTPMRVALAGTFHYYSCERAKKAMGYQPLVTMDDAMERTVQSFRHLR 370
|
Homo sapiens (taxid: 9606) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 7 EC: 0 |
| >sp|Q3ZBE9|NSDHL_BOVIN Sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating OS=Bos taurus GN=NSDHL PE=2 SV=1 | Back alignment and function description |
|---|
Score = 247 bits (630), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 140/354 (39%), Positives = 196/354 (55%), Gaps = 22/354 (6%)
Query: 8 RLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYV 67
+ C V GG GF +H+VE L+ ++V + D+ + + R +
Sbjct: 21 KRCTVIGGCGFLGQHMVEQLLARG-YAVNVFDIR---------------QGFDNPRVQFF 64
Query: 68 SFDLRHKAQVLQALQGAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLI 127
DL + + AL+G VFH A+P NN +L + VN GTKNVI+ C E V++LI
Sbjct: 65 LGDLCSQQDLYPALKGVSTVFHCASPPPFNNNKELFYRVNYIGTKNVIETCKEAGVQKLI 124
Query: 128 YTSSPSVVFDGVHGIINGNEALPYPPKHNDFYSATKAEGEALVIKA-NGTNGLLTCCIRP 186
TSS SV+F+GV I NG E LPY K D+Y+ TK E V+ A + LT IRP
Sbjct: 125 LTSSASVIFEGV-DIKNGTEDLPYATKPIDYYTETKILQERAVLGAHDPEKNFLTTAIRP 183
Query: 187 SSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICAERALASEVTV 246
IFGP D LVP L+ AA+ GK KF+IG+G N+ DFT+V NV H HI A L+ + +
Sbjct: 184 HGIFGPRDPQLVPILIEAAKKGKMKFMIGNGKNLVDFTFVENVVHGHILAAEHLSQDTAL 243
Query: 247 AEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELTYRLLGP 306
G+A+ +TN E I FW F+S IL GL Y+ P+ IP ++ +A +V L ++ P
Sbjct: 244 G----GKAFHITNDEPIPFWTFLSRILTGLNYEAPKYHIPYWLAYYLALLVSLLVMVISP 299
Query: 307 YGMKVPQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSYSHLR 360
P TP RV L + C KAK L+GY P+V +++ + +TV S+ HLR
Sbjct: 300 VIQLQPTFTPMRVALAGTFHYYSCEKAKKLMGYRPLVTMDDAVDKTVRSFHHLR 353
|
Bos taurus (taxid: 9913) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 7 EC: 0 |
| >sp|Q5PPL3|NSDHL_RAT Sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating OS=Rattus norvegicus GN=Nsdhl PE=2 SV=1 | Back alignment and function description |
|---|
Score = 246 bits (627), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 144/356 (40%), Positives = 198/356 (55%), Gaps = 22/356 (6%)
Query: 8 RLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYV 67
+ C V GG GF +H+VE L+ ++V + D+ + + R +
Sbjct: 27 KKCTVIGGSGFLGQHMVEQLLSRG-YAVNVFDVR---------------QGFDNPRVQFF 70
Query: 68 SFDLRHKAQVLQALQGAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLI 127
DL ++ + AL+G VFH A+P S+ NN +L + VN GTK VI+ C E V++LI
Sbjct: 71 IGDLCNQQDLYPALKGVSTVFHCASPPSNSNNKELFYRVNSTGTKTVIETCKEAGVQKLI 130
Query: 128 YTSSPSVVFDGVHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANG-TNGLLTCCIRP 186
TSS SVVF+GV I NG E LPY K D+Y+ TK E V+ AN LT IRP
Sbjct: 131 LTSSASVVFEGVD-IKNGTEDLPYAMKPIDYYTETKILQERAVLDANDPKKNFLTAAIRP 189
Query: 187 SSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICAERALASEVTV 246
IFGP D LVP L+ AAR GK KF+IG+G N+ DFT+V NV H HI A L+ + +
Sbjct: 190 HGIFGPRDPQLVPVLIDAARKGKMKFMIGNGKNLVDFTFVENVVHGHILAAEHLSRDAGL 249
Query: 247 AEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELTYRLLGP 306
G+A+ +TN E I FW F+S IL GL Y+ P+ IP V +A ++ L +L P
Sbjct: 250 G----GKAFHITNDEPIPFWTFLSRILTGLNYEAPKYHIPYRVAYYLAFLLSLLVMVLSP 305
Query: 307 YGMKVPQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSYSHLRAE 362
TP RV L + C KAK L+GY P+V +++ ++RTV S+ HLR +
Sbjct: 306 LIQIQTTFTPFRVALAGTFHYYSCEKAKKLIGYRPLVTMDDAVERTVQSFHHLRKD 361
|
Rattus norvegicus (taxid: 10116) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 7 EC: 0 |
| >sp|O43050|ERG26_SCHPO Sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=erg26 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 190 bits (482), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 126/347 (36%), Positives = 190/347 (54%), Gaps = 25/347 (7%)
Query: 11 VVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFD 70
V+ G GF H++ L + ++RIA A + E + +L E G+ + D
Sbjct: 6 VLVIGSGFLGGHIIRQLCERE--NLRIA------AFDLFENEKLLHEL--HGQFTMYTGD 55
Query: 71 LRHKAQVLQALQG--AEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIY 128
L + + + + VV H A+P ++ ++ VNV+GT N+I AC + V L+Y
Sbjct: 56 LTKQGDIERVFEEFHPRVVIHTASPVHNLA-RDIYFEVNVDGTANIIKACQKFNVDALVY 114
Query: 129 TSSPSVVFDGVHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANGTNGLLTCCIRPSS 188
TSS VVF+G +IN +E+ P P H D Y+ +KA E V++A+ + L T +R +
Sbjct: 115 TSSAGVVFNGA-DLINVDESQPIPEVHMDAYNESKALAEKQVLEAS-SESLKTAALRVAG 172
Query: 189 IFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICA-ERALASEVTVA 247
+FGPGDR LVP +++ + G++KF +GD N++DFTY+ N A+AH+ A + L+S T
Sbjct: 173 LFGPGDRQLVPGMLSVLKNGQTKFQLGDNLNLFDFTYIENAAYAHLLAMDNLLSSNPT-- 230
Query: 248 EKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPR-IKIPAFVMMPIAHMVELTYRLLGP 306
A GQ +F+TN + I FW+F I G+ P IK P V M +A E L
Sbjct: 231 --ANGQVFFITNGQVIYFWDFARAIWAHAGHVPPYIIKFPRPVGMLLATAAEWVCYFL-- 286
Query: 307 YGMKVPQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTV 353
K P T RV+ +R F+ KA+D+L Y PIV LEEGI+RT+
Sbjct: 287 --KKEPGFTRFRVQFSCANRYFNIQKAEDVLKYHPIVDLEEGIRRTL 331
|
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 7 EC: 0 |
| >sp|P53199|ERG26_YEAST Sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ERG26 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 189 bits (480), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 121/351 (34%), Positives = 182/351 (51%), Gaps = 24/351 (6%)
Query: 11 VVTGGRGFAARHLVEMLI----RYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHY 66
++ GG GF HL++ + D+ + DL + ++ + +
Sbjct: 8 LIIGGSGFLGLHLIQQFFDINPKPDIHIFDVRDLPEKLSKQ---------FTFNVDDIKF 58
Query: 67 VSFDLRHKAQVLQALQ--GAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVK 124
DL + A+ A VV H A+P N ++ VNV+GT+NVID C + V
Sbjct: 59 HKGDLTSPDDMENAINESKANVVVHCASPMHG-QNPDIYDIVNVKGTRNVIDMCKKCGVN 117
Query: 125 RLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANG-TNGLLTCC 183
L+YTSS V+F+G + N +E P P D Y+ TKA E +V+KAN ++ T
Sbjct: 118 ILVYTSSAGVIFNG-QDVHNADETWPIPEVPMDAYNETKAIAEDMVLKANDPSSDFYTVA 176
Query: 184 IRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICAERALASE 243
+RP+ IFGPGDR LVP L A+ G+SKF IGD NN++D+TY NVA AH+ A + L
Sbjct: 177 LRPAGIFGPGDRQLVPGLRQVAKLGQSKFQIGDNNNLFDWTYAGNVADAHVLAAQKLLDP 236
Query: 244 VTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGY-QRPRIKIPAFVMMPIAHMVELTYR 302
T +G+ +F+TN FW + + G+ + I + V + ++ E +
Sbjct: 237 KT-RTAVSGETFFITNDTPTYFWALARTVWKADGHIDKHVIVLKRPVAICAGYLSEWVSK 295
Query: 303 LLGPYGMKVPQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTV 353
+LG K P LTP RV+++ R + +KAK LLGY P V +EEGI +T+
Sbjct: 296 MLG----KEPGLTPFRVKIVCAYRYHNIAKAKKLLGYTPRVGIEEGINKTL 342
|
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 7 EC: 0 |
| >sp|A8DZE7|D42E1_DANRE Short-chain dehydrogenase/reductase family 42E member 1 OS=Danio rerio GN=sdr42e1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 180 bits (457), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 119/342 (34%), Positives = 188/342 (54%), Gaps = 28/342 (8%)
Query: 11 VVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFD 70
++TGG G+ L L++ V + D+S I P +G++ ++ D
Sbjct: 11 LITGGGGYFGFRLACALLKTSS-KVVLFDVSPPIQDLP---EGLI----------FMRAD 56
Query: 71 LRHKAQVLQALQGAEVVFHMAAPNSSIN---NHKLHHSVNVEGTKNVIDACAELKVKRLI 127
+R AQV +A++G+ VFH+A+ S N KL VNV+GT+N++ AC V RLI
Sbjct: 57 IRDYAQVEKAVRGSHCVFHIASYGMSGREQLNRKLIEEVNVKGTENILRACVAHSVPRLI 116
Query: 128 YTSSPSVVFDGVHGIINGNEALPYPPKH--NDFYSATKAEGEALVIKANG------TNGL 179
YTS+ +VVF G I NG+E+LPY P H D YS TK+ E V+KAN T L
Sbjct: 117 YTSTFNVVFGG-QEIKNGDESLPYLPLHLHPDHYSRTKSIAEMQVLKANNLALSNSTGVL 175
Query: 180 LTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICAERA 239
TC +RP+ I+GPG++ +P +V+ G +F+ GD +++ +F +V N+ AH+ A A
Sbjct: 176 RTCALRPAGIYGPGEQRHLPRIVSYIENGIFRFVYGDPDSLVEFVHVDNLVSAHLLAADA 235
Query: 240 LASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVEL 299
L + +AAGQAYF+++ + +EF ++EGLGY P +++P ++ A + E+
Sbjct: 236 LTEKQQC--RAAGQAYFISDGRPVNNFEFFRPLVEGLGYSFPTLRLPISMIYFFAFLTEM 293
Query: 300 TYRLLGPYGMKVPQLTPSRVRLLSCSRTFDCSKAKDLLGYMP 341
+ ++G P LT + V + F KA++ LGY P
Sbjct: 294 VHFVVGRIYNFQPLLTRTEVYKTGVTHYFSMRKAREELGYEP 335
|
Danio rerio (taxid: 7955) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 485 | ||||||
| 359476293 | 563 | PREDICTED: 3beta-hydroxysteroid-dehydrog | 0.995 | 0.857 | 0.787 | 0.0 | |
| 297822137 | 564 | 3beta-hydroxysteroid-dehydrogenase/decar | 0.991 | 0.852 | 0.752 | 0.0 | |
| 357465913 | 579 | 3beta-hydroxysteroid-dehydrogenase/decar | 0.987 | 0.827 | 0.758 | 0.0 | |
| 42569340 | 564 | 3beta-hydroxysteroid-dehydrogenase/decar | 0.991 | 0.852 | 0.738 | 0.0 | |
| 224088655 | 558 | predicted protein [Populus trichocarpa] | 0.991 | 0.862 | 0.754 | 0.0 | |
| 255550225 | 559 | NAD dependent epimerase/dehydratase, put | 0.991 | 0.860 | 0.746 | 0.0 | |
| 356520816 | 562 | PREDICTED: 3beta-hydroxysteroid-dehydrog | 0.987 | 0.852 | 0.754 | 0.0 | |
| 356506702 | 563 | PREDICTED: 3beta-hydroxysteroid-dehydrog | 0.987 | 0.850 | 0.750 | 0.0 | |
| 296081738 | 540 | unnamed protein product [Vitis vinifera] | 0.948 | 0.851 | 0.789 | 0.0 | |
| 449522542 | 528 | PREDICTED: 3beta-hydroxysteroid-dehydrog | 0.987 | 0.907 | 0.722 | 0.0 |
| >gi|359476293|ref|XP_002282161.2| PREDICTED: 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 788 bits (2036), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 382/485 (78%), Positives = 422/485 (87%), Gaps = 2/485 (0%)
Query: 1 MSGEENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALR 60
M GE+ + CVVTGGRGFAARHLVEMLIR FSVRIADL SI LEP EE+G+LGEAL+
Sbjct: 1 MEGEQ--KWCVVTGGRGFAARHLVEMLIRSGRFSVRIADLGPSIKLEPSEEKGLLGEALQ 58
Query: 61 SGRAHYVSFDLRHKAQVLQALQGAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAE 120
SGRA YVS DLR KAQVL+A QGAE VFHMAAP+SSINNH+LHHSVNV+GTKNVIDAC E
Sbjct: 59 SGRAEYVSADLRDKAQVLKACQGAEAVFHMAAPDSSINNHQLHHSVNVQGTKNVIDACIE 118
Query: 121 LKVKRLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANGTNGLL 180
KVKRLIYTSSPSVVFDGVHGI NG+E+LPYP KHND YSATKAEGEALVIK+NGTNGLL
Sbjct: 119 QKVKRLIYTSSPSVVFDGVHGIFNGDESLPYPDKHNDSYSATKAEGEALVIKSNGTNGLL 178
Query: 181 TCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICAERAL 240
TCCIRPSSIFGPGD+LLVPSLV AARAGKSKFIIGDGNN+YDFTYV NVAHAHICAE+AL
Sbjct: 179 TCCIRPSSIFGPGDKLLVPSLVNAARAGKSKFIIGDGNNMYDFTYVENVAHAHICAEQAL 238
Query: 241 ASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELT 300
ASE +AE+AAGQAYF+TNME IKFWEFVSLILEGLGY+RPRIKIPA VMMPIAHMVE T
Sbjct: 239 ASEGKIAEQAAGQAYFITNMEPIKFWEFVSLILEGLGYERPRIKIPALVMMPIAHMVEWT 298
Query: 301 YRLLGPYGMKVPQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSYSHLR 360
Y++L PYGMKVPQLTPSR+RLLSCSRTF CSKAKD L Y PIV L+EG++RT+DSY LR
Sbjct: 299 YKMLAPYGMKVPQLTPSRIRLLSCSRTFSCSKAKDQLSYTPIVSLQEGLRRTIDSYPDLR 358
Query: 361 AENQLKRVGPSKASVLLGSGRVADTLLWKDKKWTLTAVLILVAIYYIFIVPGYTIITAFS 420
AE+ KR GPSKAS LGSGRVADTLLWKDKK LT +L+L+A Y+ FI GYTI+TA S
Sbjct: 359 AEHLPKREGPSKASRYLGSGRVADTLLWKDKKLALTTLLVLMAFYHNFIASGYTIVTAVS 418
Query: 421 KLLLLMLIFLVIHSFLPEKIFGYTLEKIPASSFHLSDEKSLRLAHSVASSWNTSITVLKS 480
KL L+ IFL IH LPEKI GYT+EKIP S+FH S+E+S R A SVASSWNT++ VLKS
Sbjct: 419 KLFLVASIFLFIHGNLPEKILGYTVEKIPPSNFHFSEERSHRAALSVASSWNTAVNVLKS 478
Query: 481 LSKGN 485
L KG+
Sbjct: 479 LCKGD 483
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297822137|ref|XP_002878951.1| 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2 [Arabidopsis lyrata subsp. lyrata] gi|297324790|gb|EFH55210.1| 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 770 bits (1987), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/481 (75%), Positives = 418/481 (86%)
Query: 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRA 64
ENER CVVTGGRGFAARHLVEML+RY+MFSVRIADL+ +I L+ HEE G+L E LRSGR
Sbjct: 7 ENERWCVVTGGRGFAARHLVEMLVRYEMFSVRIADLAPAIMLDLHEENGVLDEGLRSGRV 66
Query: 65 HYVSFDLRHKAQVLQALQGAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVK 124
Y+S DLR K+QV++A QGAEVVFHMAAP+SSINNH+L +SVNV+GT+NVIDAC ++ VK
Sbjct: 67 QYISADLRDKSQVVKAFQGAEVVFHMAAPDSSINNHQLQYSVNVQGTQNVIDACVDVGVK 126
Query: 125 RLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANGTNGLLTCCI 184
RLIYTSSPSVVFDGVHGI+NG+E++ YP KHND YSATKAEGE L++KANG GLLTCCI
Sbjct: 127 RLIYTSSPSVVFDGVHGILNGSESMAYPIKHNDSYSATKAEGEELIMKANGRKGLLTCCI 186
Query: 185 RPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICAERALASEV 244
RPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNN+YDFTYV NVAHAH+CAERALAS
Sbjct: 187 RPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNLYDFTYVENVAHAHVCAERALASGG 246
Query: 245 TVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELTYRLL 304
V+ KAAGQAYF+TNME IKFWEFVS +LEGLGY+RP IKIPAFVMMPIAH+VELTY+LL
Sbjct: 247 DVSTKAAGQAYFITNMEPIKFWEFVSQLLEGLGYERPSIKIPAFVMMPIAHLVELTYKLL 306
Query: 305 GPYGMKVPQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSYSHLRAENQ 364
GPYGMKVPQLTPSRVRLLSCSRTFD +KAKD LGY P+VPL+EGI+RT+DS+SHL A +Q
Sbjct: 307 GPYGMKVPQLTPSRVRLLSCSRTFDSTKAKDRLGYAPVVPLQEGIRRTIDSFSHLTAGSQ 366
Query: 365 LKRVGPSKASVLLGSGRVADTLLWKDKKWTLTAVLILVAIYYIFIVPGYTIITAFSKLLL 424
KR GPSKAS +LG G+VADTLLWKD K TL A+ IL+++YY F+ G TI+TA SK LL
Sbjct: 367 SKREGPSKASRILGGGKVADTLLWKDLKQTLIAIFILISVYYNFVATGSTIVTALSKALL 426
Query: 425 LMLIFLVIHSFLPEKIFGYTLEKIPASSFHLSDEKSLRLAHSVASSWNTSITVLKSLSKG 484
+ +FL +H LPEKIFGYT+EKIPAS FHLS + S L+ SV SSWNT++ L+SL +G
Sbjct: 427 VASVFLFLHGILPEKIFGYTVEKIPASQFHLSKDSSEHLSLSVISSWNTTVKALRSLCQG 486
Query: 485 N 485
N
Sbjct: 487 N 487
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357465913|ref|XP_003603241.1| 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform [Medicago truncatula] gi|355492289|gb|AES73492.1| 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 761 bits (1964), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 365/481 (75%), Positives = 413/481 (85%), Gaps = 2/481 (0%)
Query: 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHY 66
E CVVTGGRGFAARHLVEMLI+ + + VRIADL +I LEP E+ G+LG+AL SGRA Y
Sbjct: 6 EGWCVVTGGRGFAARHLVEMLIQLNTYCVRIADLGSTIELEPSEQLGLLGQALHSGRAQY 65
Query: 67 VSFDLRHKAQVLQALQGAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRL 126
VS DLR+K Q+L+A G EVVFHMAAPNSSINN++LHHSVNVEGTKNVIDAC ELKVKRL
Sbjct: 66 VSVDLRNKPQLLKAFDGVEVVFHMAAPNSSINNYQLHHSVNVEGTKNVIDACVELKVKRL 125
Query: 127 IYTSSPSVVFDGVHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANGTNGLLTCCIRP 186
IYTSSPSVVFDG+HGI NG+E+LPYPP HND YSATKAEGE LVIKANGT+GLLTCCIRP
Sbjct: 126 IYTSSPSVVFDGIHGIHNGSESLPYPPSHNDHYSATKAEGEGLVIKANGTSGLLTCCIRP 185
Query: 187 SSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICAERALASEVTV 246
SSIFGPGD+LLVPSLV AA+AGKSKFI+GDGNNVYDFTYV NVAHAHICA+RALASE TV
Sbjct: 186 SSIFGPGDKLLVPSLVDAAKAGKSKFIVGDGNNVYDFTYVENVAHAHICADRALASEGTV 245
Query: 247 AEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELTYRLLGP 306
+EKAAG+AYF+TNME IKFWEF+SLILEGLGYQRP IKIP FV+MPIAH+VE YRLLGP
Sbjct: 246 SEKAAGEAYFITNMEPIKFWEFMSLILEGLGYQRPSIKIPVFVIMPIAHLVEWIYRLLGP 305
Query: 307 YGMKVPQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSYSHLRAENQL- 365
YGMKVPQLTPSR+RL SC+R+FDCSKAKD L Y PI+PL+EGI+RT++SY HLRAENQL
Sbjct: 306 YGMKVPQLTPSRIRLTSCTRSFDCSKAKDRLDYAPIIPLQEGIRRTIESYPHLRAENQLK 365
Query: 366 -KRVGPSKASVLLGSGRVADTLLWKDKKWTLTAVLILVAIYYIFIVPGYTIITAFSKLLL 424
KR GPSKASV LGSGRVADTLLWKDKK T T +L+ +AIY FI T ITA +KLLL
Sbjct: 366 SKREGPSKASVYLGSGRVADTLLWKDKKQTFTTLLVFIAIYVNFIASENTFITALTKLLL 425
Query: 425 LMLIFLVIHSFLPEKIFGYTLEKIPASSFHLSDEKSLRLAHSVASSWNTSITVLKSLSKG 484
I L IH LP KI GYT+EK+P S FHLS++ S ++A SVASSWN ++ LKSL++G
Sbjct: 426 YSSIGLFIHGILPAKILGYTVEKMPTSWFHLSEDISNQIAFSVASSWNFAVNALKSLAEG 485
Query: 485 N 485
N
Sbjct: 486 N 486
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|42569340|ref|NP_180194.2| 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2 [Arabidopsis thaliana] gi|229890388|sp|Q67ZE1.2|HSDD2_ARATH RecName: Full=3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2; Short=At3BETAHSD/D2; AltName: Full=4alpha-carboxysterol-C3-dehydrogenase/C4- decarboxylase isoform 1-2; AltName: Full=Reticulon-like protein B19; Short=AtRTNLB19; AltName: Full=Sterol-4-alpha-carboxylate 3-dehydrogenase 2, decarboxylating gi|330252720|gb|AEC07814.1| 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 759 bits (1961), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/481 (73%), Positives = 414/481 (86%)
Query: 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRA 64
E ER CVVTGGRGFAARHLVEML+RY+MF VRIADL+ +I L+P E G+L E LRSGR
Sbjct: 7 ETERWCVVTGGRGFAARHLVEMLVRYEMFCVRIADLAPAIMLDPQEGNGVLDEGLRSGRV 66
Query: 65 HYVSFDLRHKAQVLQALQGAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVK 124
Y+S DLR K+QV++A QGAEVVFHMAAP+SSINNH+L +SVNV+GT+NVIDAC ++ VK
Sbjct: 67 QYISADLRDKSQVVKAFQGAEVVFHMAAPDSSINNHQLQYSVNVQGTQNVIDACVDVGVK 126
Query: 125 RLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANGTNGLLTCCI 184
RLIYTSSPSVVFDGVHGI+NG E++ YP KHND YSATKAEGE L++KANG NGLLTCCI
Sbjct: 127 RLIYTSSPSVVFDGVHGILNGTESMAYPIKHNDSYSATKAEGEELIMKANGRNGLLTCCI 186
Query: 185 RPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICAERALASEV 244
RPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNN+YDFTYV NVAHAH+CAERALAS
Sbjct: 187 RPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNLYDFTYVENVAHAHVCAERALASGG 246
Query: 245 TVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELTYRLL 304
V+ KAAGQAYF+TNME IKFWEF+S +L+GLGY+RP IKIPAF+MMPIAH+VELTY++L
Sbjct: 247 DVSTKAAGQAYFITNMEPIKFWEFMSQLLDGLGYERPSIKIPAFIMMPIAHLVELTYKVL 306
Query: 305 GPYGMKVPQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSYSHLRAENQ 364
GPYGM VPQLTPSRVRLLSCSRTFD +KAKD LGY P+VPL+EGI+RT+DS+SHL A +Q
Sbjct: 307 GPYGMTVPQLTPSRVRLLSCSRTFDSTKAKDRLGYAPVVPLQEGIRRTIDSFSHLTAGSQ 366
Query: 365 LKRVGPSKASVLLGSGRVADTLLWKDKKWTLTAVLILVAIYYIFIVPGYTIITAFSKLLL 424
KR GPSKAS +LG G+VADTLLWKD K TL A+ IL++IYY F+ G T++TA SK LL
Sbjct: 367 SKREGPSKASRILGGGKVADTLLWKDLKQTLIAIFILISIYYNFVATGSTVVTALSKALL 426
Query: 425 LMLIFLVIHSFLPEKIFGYTLEKIPASSFHLSDEKSLRLAHSVASSWNTSITVLKSLSKG 484
+ +FL +H LPEKIFGYT+EKIPAS FHLS + S L+ SV SSWNT++ L+SL +G
Sbjct: 427 VASVFLFLHGILPEKIFGYTVEKIPASQFHLSKDSSHDLSLSVISSWNTTVKALRSLCQG 486
Query: 485 N 485
N
Sbjct: 487 N 487
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224088655|ref|XP_002308509.1| predicted protein [Populus trichocarpa] gi|222854485|gb|EEE92032.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 759 bits (1960), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 366/485 (75%), Positives = 417/485 (85%), Gaps = 4/485 (0%)
Query: 1 MSGEENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALR 60
MSGEE R CVVTGGRGFAARHLVEMLI+YD+FSVRIADL I L E+ G LG AL+
Sbjct: 1 MSGEE--RWCVVTGGRGFAARHLVEMLIQYDLFSVRIADLEPQITLSTEEQNGALGHALK 58
Query: 61 SGRAHYVSFDLRHKAQVLQALQGAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAE 120
SGRA+YVS DLR K QVL+ ++GAEVVFHMAAPNSS+N+ +LH+SVNV+GTKNVIDAC E
Sbjct: 59 SGRANYVSADLRDKPQVLKVIEGAEVVFHMAAPNSSVNSQQLHYSVNVQGTKNVIDACVE 118
Query: 121 LKVKRLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANGTNGLL 180
LKVKRLIYTSS SVVFDG+HGIING+E+LPY K D YSATKAEGEA ++KANGTNGLL
Sbjct: 119 LKVKRLIYTSSASVVFDGIHGIINGDESLPYTDKPLDSYSATKAEGEAAILKANGTNGLL 178
Query: 181 TCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICAERAL 240
TC +RPSSIFGPGDRL VPSLVAAARAGKSKF+IGDGNN+YDFTYV NVAHAHICA+RAL
Sbjct: 179 TCSLRPSSIFGPGDRLFVPSLVAAARAGKSKFMIGDGNNIYDFTYVENVAHAHICADRAL 238
Query: 241 ASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELT 300
ASE VAEKAAGQAYF+TNME IKFWEF SLILEGLGY+RPRIKIPAF +MPIA ++E
Sbjct: 239 ASEQEVAEKAAGQAYFITNMEPIKFWEFTSLILEGLGYERPRIKIPAFAVMPIAQVIEWI 298
Query: 301 YRLLGPYGMKVPQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSYSHLR 360
Y++ GPYGMKVPQL PSR+RLLSCSR+F+CSKAKD LGY PIVPLEEG+KRT++SY HLR
Sbjct: 299 YKIFGPYGMKVPQLIPSRIRLLSCSRSFNCSKAKDRLGYAPIVPLEEGLKRTLESYPHLR 358
Query: 361 AENQLKRVGPSKASVLLGSGRVADTLLWKDKKWTLTAVLILVAIYYIFIVPGYTIITAFS 420
AENQ KR GPSKAS+ LGSG+ DTLLWKDKK TL +L+LVAIYY FI TI+TA S
Sbjct: 359 AENQPKREGPSKASICLGSGK--DTLLWKDKKQTLITLLVLVAIYYNFIASQSTIVTAAS 416
Query: 421 KLLLLMLIFLVIHSFLPEKIFGYTLEKIPASSFHLSDEKSLRLAHSVASSWNTSITVLKS 480
KLLL++ +FL IH LPEK+FGYT+EKIP S F+LS+E+S + A SVASSWN ++ VLKS
Sbjct: 417 KLLLVVSVFLFIHGNLPEKVFGYTIEKIPMSYFNLSEERSHQTALSVASSWNAAVNVLKS 476
Query: 481 LSKGN 485
L KGN
Sbjct: 477 LCKGN 481
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255550225|ref|XP_002516163.1| NAD dependent epimerase/dehydratase, putative [Ricinus communis] gi|223544649|gb|EEF46165.1| NAD dependent epimerase/dehydratase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 759 bits (1959), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/481 (74%), Positives = 413/481 (85%)
Query: 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRA 64
E ER CVVTGGRGFAARHLVEM+I+ +MFSVRIADL I L P EE G LG A +SGRA
Sbjct: 3 EEERWCVVTGGRGFAARHLVEMVIKLEMFSVRIADLESCIQLAPEEESGTLGNAFKSGRA 62
Query: 65 HYVSFDLRHKAQVLQALQGAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVK 124
YVS DLR KAQVL+A++GAEVVFHMAAPNSSINN++LH+SVNV+GTKNVIDAC ELKVK
Sbjct: 63 IYVSMDLRDKAQVLKAIEGAEVVFHMAAPNSSINNYQLHYSVNVQGTKNVIDACIELKVK 122
Query: 125 RLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANGTNGLLTCCI 184
RLIYTSS SVVFDG++GI+NG+E+LPYPPK D Y+ATK EGE ++KANGT GLLTC +
Sbjct: 123 RLIYTSSASVVFDGINGILNGDESLPYPPKPLDSYTATKTEGETAILKANGTKGLLTCSV 182
Query: 185 RPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICAERALASEV 244
RPSSIFGPGDRL +PSLVAAARAGKSKFIIGDGNN+YDFTYV NVAHAHICAERALAS
Sbjct: 183 RPSSIFGPGDRLFIPSLVAAARAGKSKFIIGDGNNIYDFTYVENVAHAHICAERALASGG 242
Query: 245 TVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELTYRLL 304
VAE+AAGQAYF+TNME IKFWEF SL+L GLGY+RPRIK+PA +MPIAH+VE TY+LL
Sbjct: 243 EVAEQAAGQAYFITNMEPIKFWEFTSLVLGGLGYERPRIKVPAVAVMPIAHLVEQTYKLL 302
Query: 305 GPYGMKVPQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSYSHLRAENQ 364
GPYGMKVPQL PSR+RLLSCSR+FDCSKAK LGY PI+ LEEG++RT++S+SHLRAENQ
Sbjct: 303 GPYGMKVPQLIPSRIRLLSCSRSFDCSKAKKQLGYTPIISLEEGLRRTLESFSHLRAENQ 362
Query: 365 LKRVGPSKASVLLGSGRVADTLLWKDKKWTLTAVLILVAIYYIFIVPGYTIITAFSKLLL 424
KR GPSKA LG G+VADTLLWKDKK T+T +LIL+AIYY + TIITA SK L+
Sbjct: 363 PKREGPSKAHRCLGGGKVADTLLWKDKKQTMTTLLILIAIYYYLVTSQSTIITALSKFLI 422
Query: 425 LMLIFLVIHSFLPEKIFGYTLEKIPASSFHLSDEKSLRLAHSVASSWNTSITVLKSLSKG 484
L+FL+IH+ LPE+IFGYT+EKIPAS FHLS+E+S + A SVASSWN ++ VLKSL KG
Sbjct: 423 AALVFLLIHANLPERIFGYTIEKIPASHFHLSEEQSHQAALSVASSWNAAVNVLKSLCKG 482
Query: 485 N 485
N
Sbjct: 483 N 483
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356520816|ref|XP_003529056.1| PREDICTED: 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 755 bits (1950), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 363/481 (75%), Positives = 415/481 (86%), Gaps = 2/481 (0%)
Query: 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHY 66
++ CVVTGGRGFAARHLVEMLIR++ + VRIADL SI LEP E+ G+LG+AL SGRA Y
Sbjct: 5 DKWCVVTGGRGFAARHLVEMLIRHNEYCVRIADLEASIVLEPAEQLGLLGQALHSGRAQY 64
Query: 67 VSFDLRHKAQVLQALQGAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRL 126
VS DLR+K QVL+AL+G EVVFHMAAPNSSINN++LHHSVNV+GTKNVIDAC EL VKRL
Sbjct: 65 VSLDLRNKVQVLKALEGVEVVFHMAAPNSSINNYQLHHSVNVQGTKNVIDACVELNVKRL 124
Query: 127 IYTSSPSVVFDGVHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANGTNGLLTCCIRP 186
+YTSSPSVVFDGVHGI NGNE +PY ND YSATKAEGEALVIKANGTNGLLTCCIRP
Sbjct: 125 VYTSSPSVVFDGVHGIHNGNETMPYAHSPNDHYSATKAEGEALVIKANGTNGLLTCCIRP 184
Query: 187 SSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICAERALASEVTV 246
SSIFGPGDRLLVPSLV AAR GKSKFIIGDGNNVYDFTYV NVAHAHICA+RAL SE +
Sbjct: 185 SSIFGPGDRLLVPSLVDAARKGKSKFIIGDGNNVYDFTYVENVAHAHICADRALVSEGPI 244
Query: 247 AEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELTYRLLGP 306
+EKAAG+AYF+TNMES+KFWEFVS+++EGLGY+ PRIKIP FV+MPIAH+VE YRLLGP
Sbjct: 245 SEKAAGEAYFITNMESMKFWEFVSVVVEGLGYEGPRIKIPTFVIMPIAHLVEWIYRLLGP 304
Query: 307 YGMKVPQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSYSHLRAENQ-- 364
YGMKVPQLTPSR+RL SCSRTFDCSKAKD LGY PIV L+EG++RT++S++HL+AENQ
Sbjct: 305 YGMKVPQLTPSRIRLTSCSRTFDCSKAKDRLGYAPIVTLQEGLRRTIESFTHLKAENQPK 364
Query: 365 LKRVGPSKASVLLGSGRVADTLLWKDKKWTLTAVLILVAIYYIFIVPGYTIITAFSKLLL 424
KR GPSKAS LGSGRVADTLLWKDKK T A+L+L+AIY+ FI TII+A +KLLL
Sbjct: 365 TKREGPSKASKYLGSGRVADTLLWKDKKQTFIALLVLIAIYFNFIASENTIISALTKLLL 424
Query: 425 LMLIFLVIHSFLPEKIFGYTLEKIPASSFHLSDEKSLRLAHSVASSWNTSITVLKSLSKG 484
IFL IH+ LP KI G+TLEKIP S FHLS+ S ++A SVASSWN ++ VLKSL++G
Sbjct: 425 FASIFLFIHAILPAKILGFTLEKIPKSWFHLSEYLSHQIALSVASSWNIAVNVLKSLAEG 484
Query: 485 N 485
N
Sbjct: 485 N 485
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356506702|ref|XP_003522115.1| PREDICTED: 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 754 bits (1948), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/481 (75%), Positives = 413/481 (85%), Gaps = 2/481 (0%)
Query: 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHY 66
++ CVVTGGRGFAARHLVEMLIR++ + VRIADL +I LEP E+ G+LG+AL SGRA Y
Sbjct: 6 DKWCVVTGGRGFAARHLVEMLIRHNEYCVRIADLEANIVLEPAEQLGLLGQALHSGRAQY 65
Query: 67 VSFDLRHKAQVLQALQGAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRL 126
VS DLR+KAQ+L+AL+G EVVFHMAAPNSSINN++LHHSVNV+GTKNVIDAC EL VKRL
Sbjct: 66 VSLDLRNKAQLLKALEGVEVVFHMAAPNSSINNYQLHHSVNVQGTKNVIDACVELNVKRL 125
Query: 127 IYTSSPSVVFDGVHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANGTNGLLTCCIRP 186
+YTSSPSVVFDGVHGI NGNE +PY ND YSATKAEGEALVIKANGTNGLLTCCIRP
Sbjct: 126 VYTSSPSVVFDGVHGIHNGNETMPYAHSPNDHYSATKAEGEALVIKANGTNGLLTCCIRP 185
Query: 187 SSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICAERALASEVTV 246
SSIFGPGDRLLVPSLV AAR GKSKF+IGDGNNVYDFTYV NVAHAHICA+RAL SE V
Sbjct: 186 SSIFGPGDRLLVPSLVDAARKGKSKFLIGDGNNVYDFTYVENVAHAHICADRALVSEAPV 245
Query: 247 AEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELTYRLLGP 306
+EKAAG+AYF+TNME +KFWEFVS+++EGLGY+ PRIKIP FV+MP AH+VE YRLLGP
Sbjct: 246 SEKAAGEAYFITNMEPMKFWEFVSVVVEGLGYEGPRIKIPTFVIMPFAHLVEWIYRLLGP 305
Query: 307 YGMKVPQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSYSHLRAENQ-- 364
YGMKVPQLTPSR+RL SCSRTFDCSKAKD LGY PIV L+EG++RT++SY+HL+AENQ
Sbjct: 306 YGMKVPQLTPSRIRLTSCSRTFDCSKAKDRLGYAPIVTLQEGLRRTIESYTHLKAENQPK 365
Query: 365 LKRVGPSKASVLLGSGRVADTLLWKDKKWTLTAVLILVAIYYIFIVPGYTIITAFSKLLL 424
KR G SKAS+ LGSGRVADTLLWKDKK T A+L+L+AIY+ FI TII+A +KLLL
Sbjct: 366 TKREGSSKASIYLGSGRVADTLLWKDKKQTFIALLVLIAIYFNFIASENTIISALTKLLL 425
Query: 425 LMLIFLVIHSFLPEKIFGYTLEKIPASSFHLSDEKSLRLAHSVASSWNTSITVLKSLSKG 484
IFL IH LP KI GYTLEKIP S FHLS++ S ++A SVASSWN ++ VLKSL+ G
Sbjct: 426 FASIFLFIHGILPAKILGYTLEKIPKSWFHLSEDMSHQIALSVASSWNIAVNVLKSLADG 485
Query: 485 N 485
N
Sbjct: 486 N 486
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296081738|emb|CBI20743.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 751 bits (1939), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 363/460 (78%), Positives = 401/460 (87%)
Query: 26 MLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGAE 85
MLIR FSVRIADL SI LEP EE+G+LGEAL+SGRA YVS DLR KAQVL+A QGAE
Sbjct: 1 MLIRSGRFSVRIADLGPSIKLEPSEEKGLLGEALQSGRAEYVSADLRDKAQVLKACQGAE 60
Query: 86 VVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVVFDGVHGIING 145
VFHMAAP+SSINNH+LHHSVNV+GTKNVIDAC E KVKRLIYTSSPSVVFDGVHGI NG
Sbjct: 61 AVFHMAAPDSSINNHQLHHSVNVQGTKNVIDACIEQKVKRLIYTSSPSVVFDGVHGIFNG 120
Query: 146 NEALPYPPKHNDFYSATKAEGEALVIKANGTNGLLTCCIRPSSIFGPGDRLLVPSLVAAA 205
+E+LPYP KHND YSATKAEGEALVIK+NGTNGLLTCCIRPSSIFGPGD+LLVPSLV AA
Sbjct: 121 DESLPYPDKHNDSYSATKAEGEALVIKSNGTNGLLTCCIRPSSIFGPGDKLLVPSLVNAA 180
Query: 206 RAGKSKFIIGDGNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMESIKF 265
RAGKSKFIIGDGNN+YDFTYV NVAHAHICAE+ALASE +AE+AAGQAYF+TNME IKF
Sbjct: 181 RAGKSKFIIGDGNNMYDFTYVENVAHAHICAEQALASEGKIAEQAAGQAYFITNMEPIKF 240
Query: 266 WEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELTYRLLGPYGMKVPQLTPSRVRLLSCS 325
WEFVSLILEGLGY+RPRIKIPA VMMPIAHMVE TY++L PYGMKVPQLTPSR+RLLSCS
Sbjct: 241 WEFVSLILEGLGYERPRIKIPALVMMPIAHMVEWTYKMLAPYGMKVPQLTPSRIRLLSCS 300
Query: 326 RTFDCSKAKDLLGYMPIVPLEEGIKRTVDSYSHLRAENQLKRVGPSKASVLLGSGRVADT 385
RTF CSKAKD L Y PIV L+EG++RT+DSY LRAE+ KR GPSKAS LGSGRVADT
Sbjct: 301 RTFSCSKAKDQLSYTPIVSLQEGLRRTIDSYPDLRAEHLPKREGPSKASRYLGSGRVADT 360
Query: 386 LLWKDKKWTLTAVLILVAIYYIFIVPGYTIITAFSKLLLLMLIFLVIHSFLPEKIFGYTL 445
LLWKDKK LT +L+L+A Y+ FI GYTI+TA SKL L+ IFL IH LPEKI GYT+
Sbjct: 361 LLWKDKKLALTTLLVLMAFYHNFIASGYTIVTAVSKLFLVASIFLFIHGNLPEKILGYTV 420
Query: 446 EKIPASSFHLSDEKSLRLAHSVASSWNTSITVLKSLSKGN 485
EKIP S+FH S+E+S R A SVASSWNT++ VLKSL KG+
Sbjct: 421 EKIPPSNFHFSEERSHRAALSVASSWNTAVNVLKSLCKGD 460
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449522542|ref|XP_004168285.1| PREDICTED: 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 723 bits (1865), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 346/479 (72%), Positives = 402/479 (83%)
Query: 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHY 66
E+ CVVTGGRGFAARHLVEMLI+Y+MFSVRI DL SI LE EEQG LGEALRSGRA Y
Sbjct: 5 EKWCVVTGGRGFAARHLVEMLIKYNMFSVRIVDLGSSIELETSEEQGTLGEALRSGRAQY 64
Query: 67 VSFDLRHKAQVLQALQGAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRL 126
VS DLR KAQ+L+A +G EVVFHMAAPNSSINN+KLH+SVNVEG KNVID+C E VKRL
Sbjct: 65 VSADLRDKAQLLKAFEGVEVVFHMAAPNSSINNYKLHYSVNVEGAKNVIDSCVEQNVKRL 124
Query: 127 IYTSSPSVVFDGVHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANGTNGLLTCCIRP 186
IYTSS SVVFDG++ +IN +E++PY KHNDFYSATKAEGEALV+KANG NGLLTC +RP
Sbjct: 125 IYTSSASVVFDGINALINTDESMPYASKHNDFYSATKAEGEALVLKANGRNGLLTCSLRP 184
Query: 187 SSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICAERALASEVTV 246
S IFGPGDRLLVPSLVA ARAGKSKFIIGDGNN YDFTYV NV HAH+CAERALA+ +
Sbjct: 185 SGIFGPGDRLLVPSLVANARAGKSKFIIGDGNNTYDFTYVENVGHAHVCAERALAAGGVI 244
Query: 247 AEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELTYRLLGP 306
+E+AAGQAYF+TNME IKFWEFVSLIL+GLGY+RPRIKIPA ++MPIAHMV TY+LLGP
Sbjct: 245 SERAAGQAYFITNMEPIKFWEFVSLILDGLGYERPRIKIPACIVMPIAHMVHWTYKLLGP 304
Query: 307 YGMKVPQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSYSHLRAENQLK 366
YGM VPQ TPSR+RLLSC RTF+ SKAKD L Y PIV L+EGI++T+++YSHL+AE++ K
Sbjct: 305 YGMPVPQFTPSRIRLLSCCRTFNSSKAKDRLFYTPIVSLQEGIQKTIEAYSHLKAEHEHK 364
Query: 367 RVGPSKASVLLGSGRVADTLLWKDKKWTLTAVLILVAIYYIFIVPGYTIITAFSKLLLLM 426
R GPSKASV L G AD LLWKDK+ TL A+L+L+AIYY FI P T+ITA SKLL++
Sbjct: 365 REGPSKASVYLRGGTAADILLWKDKRKTLIALLVLMAIYYNFITPECTMITALSKLLMVA 424
Query: 427 LIFLVIHSFLPEKIFGYTLEKIPASSFHLSDEKSLRLAHSVASSWNTSITVLKSLSKGN 485
LIFL IH LPEKI GY +EK+ AS F LS+E+S +A ++ S WN+ + KSLS+GN
Sbjct: 425 LIFLFIHGSLPEKICGYRVEKLSASCFSLSEERSRSIAITLTSFWNSFVRNFKSLSRGN 483
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 485 | ||||||
| TAIR|locus:2057786 | 564 | 3BETAHSD/D2 "3beta-hydroxyster | 0.991 | 0.852 | 0.729 | 1.2e-191 | |
| TAIR|locus:2203771 | 439 | 3BETAHSD/D1 "3beta-hydroxyster | 0.880 | 0.972 | 0.695 | 3.1e-161 | |
| TAIR|locus:2058223 | 561 | AT2G43420 [Arabidopsis thalian | 0.975 | 0.843 | 0.409 | 9.3e-91 | |
| UNIPROTKB|F1S2D0 | 361 | NSDHL "Uncharacterized protein | 0.604 | 0.811 | 0.444 | 1.2e-60 | |
| ZFIN|ZDB-GENE-050417-163 | 345 | nsdhl "NAD(P) dependent steroi | 0.589 | 0.828 | 0.458 | 1.2e-60 | |
| UNIPROTKB|F6XJP3 | 361 | NSDHL "Uncharacterized protein | 0.604 | 0.811 | 0.444 | 5e-60 | |
| UNIPROTKB|E2QVH4 | 373 | NSDHL "Uncharacterized protein | 0.604 | 0.785 | 0.444 | 5e-60 | |
| UNIPROTKB|E1C279 | 346 | NSDHL "Uncharacterized protein | 0.604 | 0.846 | 0.458 | 1e-59 | |
| UNIPROTKB|Q15738 | 373 | NSDHL "Sterol-4-alpha-carboxyl | 0.589 | 0.766 | 0.445 | 2.7e-59 | |
| MGI|MGI:1099438 | 362 | Nsdhl "NAD(P) dependent steroi | 0.608 | 0.814 | 0.435 | 7.3e-59 |
| TAIR|locus:2057786 3BETAHSD/D2 "3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1857 (658.8 bits), Expect = 1.2e-191, P = 1.2e-191
Identities = 351/481 (72%), Positives = 408/481 (84%)
Query: 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRA 64
E ER CVVTGGRGFAARHLVEML+RY+MF VRIADL+ +I L+P E G+L E LRSGR
Sbjct: 7 ETERWCVVTGGRGFAARHLVEMLVRYEMFCVRIADLAPAIMLDPQEGNGVLDEGLRSGRV 66
Query: 65 HYVSFDLRHKAQVLQALQGAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVK 124
Y+S DLR K+QV++A QGAEVVFHMAAP+SSINNH+L +SVNV+GT+NVIDAC ++ VK
Sbjct: 67 QYISADLRDKSQVVKAFQGAEVVFHMAAPDSSINNHQLQYSVNVQGTQNVIDACVDVGVK 126
Query: 125 RLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANGTNGLLTCCI 184
RLIYTSSPSVVFDGVHGI+NG E++ YP KHND YSATKAEGE L++KANG NGLLTCCI
Sbjct: 127 RLIYTSSPSVVFDGVHGILNGTESMAYPIKHNDSYSATKAEGEELIMKANGRNGLLTCCI 186
Query: 185 RPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICAERALASEV 244
RPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNN+YDFTYV NVAHAH+CAERALAS
Sbjct: 187 RPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNLYDFTYVENVAHAHVCAERALASGG 246
Query: 245 TVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELTYRLL 304
V+ KAAGQAYF+TNME IKFWEF+S +L+GLGY+RP IKIPAF+MMPIAH+VELTY++L
Sbjct: 247 DVSTKAAGQAYFITNMEPIKFWEFMSQLLDGLGYERPSIKIPAFIMMPIAHLVELTYKVL 306
Query: 305 GPYGMKVPQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSYSHLRAENQ 364
GPYGM VPQLTPSRVRLLSCSRTFD +KAKD LGY P+VPL+EGI+RT+DS+SHL A +Q
Sbjct: 307 GPYGMTVPQLTPSRVRLLSCSRTFDSTKAKDRLGYAPVVPLQEGIRRTIDSFSHLTAGSQ 366
Query: 365 LKRVGPSKASVLLGSGRVADTLLWKDKKWTLTAVLILVAIYYIFIVPGYTIITAFSKXXX 424
KR GPSKAS +LG G+VADTLLWKD K TL A+ IL++IYY F+ G T++TA SK
Sbjct: 367 SKREGPSKASRILGGGKVADTLLWKDLKQTLIAIFILISIYYNFVATGSTVVTALSKALL 426
Query: 425 XXXXXXVIHSFLPEKIFGYTLEKIPASSFHLSDEKSLRLAHSVASSWNTSITVLKSLSKG 484
+H LPEKIFGYT+EKIPAS FHLS + S L+ SV SSWNT++ L+SL +G
Sbjct: 427 VASVFLFLHGILPEKIFGYTVEKIPASQFHLSKDSSHDLSLSVISSWNTTVKALRSLCQG 486
Query: 485 N 485
N
Sbjct: 487 N 487
|
|
| TAIR|locus:2203771 3BETAHSD/D1 "3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1570 (557.7 bits), Expect = 3.1e-161, P = 3.1e-161
Identities = 311/447 (69%), Positives = 359/447 (80%)
Query: 1 MSGEENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALR 60
M E ER CVVTGGRGFAARHLVEML+RY MF VRIADL+ +I L PHEE GILGEA+R
Sbjct: 3 MEVTETERWCVVTGGRGFAARHLVEMLVRYQMFHVRIADLAPAIVLNPHEETGILGEAIR 62
Query: 61 SGRAHYVSFDLRHKAQVLQALQGAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAE 120
SGR YVS DLR+K QV++ QGAEVVFHMAAP+SSINNH+L +SVNV+GT NVIDAC E
Sbjct: 63 SGRVQYVSADLRNKTQVVKGFQGAEVVFHMAAPDSSINNHQLQYSVNVQGTTNVIDACIE 122
Query: 121 LKVKRLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANGTNGLL 180
+ VKRLIYTSSPSVVFDGVHG +N +E+LPYPPKHND YSATKAEGEAL++KANG +GLL
Sbjct: 123 VGVKRLIYTSSPSVVFDGVHGTLNADESLPYPPKHNDSYSATKAEGEALILKANGRSGLL 182
Query: 181 TCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICAERAL 240
TCCIRPSSIFGPGD+L+VPSLV AARAGKSKFIIGDG+N YDFTYV NV HAH+CAERAL
Sbjct: 183 TCCIRPSSIFGPGDKLMVPSLVTAARAGKSKFIIGDGSNFYDFTYVENVVHAHVCAERAL 242
Query: 241 ASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELT 300
AS V KAAGQAYF+TNME IKFWEF+S +LEGLGY+RP IKIPA +MMPIA++VEL
Sbjct: 243 ASGGEVCAKAAGQAYFITNMEPIKFWEFMSQLLEGLGYERPSIKIPASLMMPIAYLVELA 302
Query: 301 YRLLGPYGMKVPQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSYSHLR 360
Y+LLGPYGMKVP LTPSRVRLLSC+RTFD SKAKD LGY P+VPL+EGIKRT+DS+SHL+
Sbjct: 303 YKLLGPYGMKVPVLTPSRVRLLSCNRTFDSSKAKDRLGYSPVVPLQEGIKRTIDSFSHLK 362
Query: 361 AENQLKRVGPSKASVLLGSGRVADTLLWKDKKWTLTAVLILVAIYYIFIVP-GYT--IIT 417
A+NQ K V +T+ WK K TL A++IL+ +Y+ F+ G + IIT
Sbjct: 363 AQNQPKT-------------EVTETIQWK--KQTLIAIVILITLYHNFVATTGSSSVIIT 407
Query: 418 AFSKXXXXXXXXXVIHSFLPEK--IFG 442
A SK I+ LPEK +FG
Sbjct: 408 AVSKVLLVSSIFMFINGILPEKMKVFG 434
|
|
| TAIR|locus:2058223 AT2G43420 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 905 (323.6 bits), Expect = 9.3e-91, P = 9.3e-91
Identities = 198/483 (40%), Positives = 290/483 (60%)
Query: 3 GEENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSG 62
G+ + + CVV GGRGF R LV L+R ++VR+AD ++ L+ E +L +AL SG
Sbjct: 8 GDSHLKTCVVLGGRGFIGRSLVSRLLRLGNWTVRVADSGHTLHLD--ESDSLLEDALSSG 65
Query: 63 RAHYVSFDLRHKAQVLQALQGAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELK 122
RA Y D+R K Q+++ +G+ VVF+M A + +++ + V V+GT+NVI AC E
Sbjct: 66 RASYHCVDVRDKPQIVKVTEGSYVVFYMGATDLRSHDYFDCYKVIVQGTRNVISACRESG 125
Query: 123 VKRLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANGTNGLLTC 182
V++LIY S+ VVFDG I +G+E+L P K + KA+ EAL+ AN +GLLTC
Sbjct: 126 VRKLIYNSTADVVFDGSQPIRDGDESLRRPLKFQSMLTDFKAQAEALIKLANNRDGLLTC 185
Query: 183 CIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICAERALAS 242
+R S +FGPGD VP LV A++G +KFI+G G N+ DFTY NV+HAHICA +AL S
Sbjct: 186 ALRSSIVFGPGDTEFVPFLVNLAKSGYAKFILGSGENISDFTYSENVSHAHICAVKALDS 245
Query: 243 EVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELTYR 302
++ E AG+ +F+TN++ ++FW+FVS I+EGLGY RP IK+P +++ + +++ T+
Sbjct: 246 QM---EFVAGKEFFITNLKPVRFWDFVSHIVEGLGYPRPSIKLPVRLVLYVFSLLKWTHE 302
Query: 303 LLGPYGMKVPQLTPSRVRLLSCS-RTFDCSKAKDLLGYMPIVPLEEGIKRTVDSYSHLRA 361
G G T + LL+ S RTF+C+ AK LGY P+V LE+GI T+ +S
Sbjct: 303 KEG-LGSNYD--TAHQYALLASSTRTFNCNAAKKHLGYTPVVTLEDGIASTLQWFSR-DL 358
Query: 362 ENQLKRVGPSKASVLLGSGRVADTLLWKDKKWTLTAVLILVAIYYIFIVPGYTIITAFSK 421
E + S A LLG G+VAD LLW+++K T + L+L YY F G T ++ ++
Sbjct: 359 EKSDDTIIQSTADQLLGCGKVADILLWRNEKKTFVSFLVLNLFYYWFFFSGNTFTSSAAQ 418
Query: 422 XXXXXXXXXVIHSFLPEKIFGYTLEKIPASSFHLSDEKSLRLAHSVASSWNTSITVLKSL 481
SF+P KIFG+ + KIP F +S+ L+ + WN + KSL
Sbjct: 419 LLFIFAVALYGVSFVPSKIFGFQVNKIPPWRFEISESAVRDLSSDIVVVWNQGVRSFKSL 478
Query: 482 SKG 484
S G
Sbjct: 479 SSG 481
|
|
| UNIPROTKB|F1S2D0 NSDHL "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 621 (223.7 bits), Expect = 1.2e-60, P = 1.2e-60
Identities = 133/299 (44%), Positives = 178/299 (59%)
Query: 63 RAHYVSFDLRHKAQVLQALQGAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELK 122
R + DL ++ + AL+G VFH A+P S NN +L + VN GTKNVI+ C E
Sbjct: 65 RVQFFLGDLCNQQDLYPALKGVSTVFHCASPAPSSNNKELFYRVNYIGTKNVIETCREAG 124
Query: 123 VKRLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANGTN-GLLT 181
V++LI TSS SV+F+GV I NG E LPY K D+Y+ TK E V+ AN + LT
Sbjct: 125 VQKLILTSSASVIFEGVD-IKNGTEDLPYAMKPIDYYTETKILQEKTVLGANDPDKNFLT 183
Query: 182 CCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICAERALA 241
IRP IFGP D LVP L+ AAR GK KF+IG+G N+ DFT+V NV H HI A L+
Sbjct: 184 TAIRPHGIFGPRDPQLVPILIEAARKGKMKFVIGNGKNLVDFTFVENVVHGHILAAERLS 243
Query: 242 SEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELTY 301
+ + G+A+ +TN E + FW F+S IL GL Y+ P+ IP +V +A +V L
Sbjct: 244 RDTGLG----GKAFHITNDEPVPFWTFLSRILTGLNYEAPKYHIPYWVAYYLALLVSLFV 299
Query: 302 RLLGPYGMKVPQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSYSHLR 360
++ P P TP RV L + C KAK LLGY P+V +++ ++RTV S+ HLR
Sbjct: 300 MVISPVIQLQPTFTPMRVALAGTFHYYSCEKAKKLLGYQPLVTMDDAVERTVQSFHHLR 358
|
|
| ZFIN|ZDB-GENE-050417-163 nsdhl "NAD(P) dependent steroid dehydrogenase-like" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 621 (223.7 bits), Expect = 1.2e-60, P = 1.2e-60
Identities = 134/292 (45%), Positives = 178/292 (60%)
Query: 70 DLRHKAQVLQALQGAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYT 129
DL K ++ AL+ +VFH A+P ++ L VN++GT+ VI AC E V++LI T
Sbjct: 56 DLCDKLALVMALKEVSIVFHCASPAPGSDDGALFQRVNIDGTRTVIQACHEAGVQKLILT 115
Query: 130 SSPSVVFDGVHGIINGNEALPYPPKHNDFYSATKAEGEALVIKA-NGTNGLLTCCIRPSS 188
SS SVVF+G I NG E LPY K D+Y+ TK + E LV++A + G LT IRP
Sbjct: 116 SSASVVFEGTD-IKNGKEDLPYAKKPIDYYTETKIKQEKLVLEACSKEKGFLTVAIRPHG 174
Query: 189 IFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICAERALASEVTVAE 248
IFGP D LVP LV AR GK KFIIGDG+N+ DFTYV NV H HI A L ++ +
Sbjct: 175 IFGPRDPQLVPILVDTARRGKMKFIIGDGSNLVDFTYVENVVHGHILAAEHLKADSPLC- 233
Query: 249 KAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELTYRLLGPYG 308
GQAY +TN E ++FW+F+S IL GLGY PR +P ++ IA ++ +L P
Sbjct: 234 ---GQAYHITNDEPVRFWDFMSQILVGLGYSAPRYHLPYALVYGIALLLWFISLILRPLI 290
Query: 309 MKVPQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSYSHLR 360
P +P RV L + C++AK +GY P+VPL+E + RTV+SY HLR
Sbjct: 291 QFKPTFSPMRVALAGTHHYYSCARAKQDMGYRPLVPLQEAVVRTVESYPHLR 342
|
|
| UNIPROTKB|F6XJP3 NSDHL "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 615 (221.5 bits), Expect = 5.0e-60, P = 5.0e-60
Identities = 133/299 (44%), Positives = 178/299 (59%)
Query: 63 RAHYVSFDLRHKAQVLQALQGAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELK 122
R + DL + + AL+G VFH A+P S NN +L + VN GTKNVI+ C E
Sbjct: 65 RVQFFLGDLCSQQDLYPALKGVSTVFHCASPPPSSNNKELFYRVNYIGTKNVIETCKEAG 124
Query: 123 VKRLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANGTN-GLLT 181
V++LI TSS SV+F+GV+ I NG E LPY K D+Y+ TK E V+ AN LT
Sbjct: 125 VQKLILTSSASVIFEGVN-IKNGTEDLPYAMKPIDYYTETKILQERAVLDANDPKRNFLT 183
Query: 182 CCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICAERALA 241
IRP IFGP D LVP L+ AAR GK KF+IG+G N+ DFT+V NV H HI A L+
Sbjct: 184 MAIRPHGIFGPRDPQLVPILIEAARKGKMKFMIGNGENLVDFTFVENVVHGHILAAEHLS 243
Query: 242 SEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELTY 301
+ V+ G+A+ +TN E I FW F+S IL GL Y+ P+ IP +V +A +V L
Sbjct: 244 QDTAVS----GKAFHITNDEPIPFWTFLSRILTGLNYEAPKYHIPYWVAYYLALLVSLLV 299
Query: 302 RLLGPYGMKVPQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSYSHLR 360
LL P P TP RV L + C +A+ ++GY P+V +++ I+RTV S+ +LR
Sbjct: 300 MLLSPVIQLQPTFTPMRVALAGTFHYYSCERARKVMGYRPLVTMDDAIERTVQSFHYLR 358
|
|
| UNIPROTKB|E2QVH4 NSDHL "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 615 (221.5 bits), Expect = 5.0e-60, P = 5.0e-60
Identities = 133/299 (44%), Positives = 178/299 (59%)
Query: 63 RAHYVSFDLRHKAQVLQALQGAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELK 122
R + DL + + AL+G VFH A+P S NN +L + VN GTKNVI+ C E
Sbjct: 77 RVQFFLGDLCSQQDLYPALKGVSTVFHCASPPPSSNNKELFYRVNYIGTKNVIETCKEAG 136
Query: 123 VKRLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANGTN-GLLT 181
V++LI TSS SV+F+GV+ I NG E LPY K D+Y+ TK E V+ AN LT
Sbjct: 137 VQKLILTSSASVIFEGVN-IKNGTEDLPYAMKPIDYYTETKILQERAVLDANDPKRNFLT 195
Query: 182 CCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICAERALA 241
IRP IFGP D LVP L+ AAR GK KF+IG+G N+ DFT+V NV H HI A L+
Sbjct: 196 MAIRPHGIFGPRDPQLVPILIEAARKGKMKFMIGNGENLVDFTFVENVVHGHILAAEHLS 255
Query: 242 SEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELTY 301
+ V+ G+A+ +TN E I FW F+S IL GL Y+ P+ IP +V +A +V L
Sbjct: 256 QDTAVS----GKAFHITNDEPIPFWTFLSRILTGLNYEAPKYHIPYWVAYYLALLVSLLV 311
Query: 302 RLLGPYGMKVPQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSYSHLR 360
LL P P TP RV L + C +A+ ++GY P+V +++ I+RTV S+ +LR
Sbjct: 312 MLLSPVIQLQPTFTPMRVALAGTFHYYSCERARKVMGYRPLVTMDDAIERTVQSFHYLR 370
|
|
| UNIPROTKB|E1C279 NSDHL "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 612 (220.5 bits), Expect = 1.0e-59, P = 1.0e-59
Identities = 137/299 (45%), Positives = 173/299 (57%)
Query: 63 RAHYVSFDLRHKAQVLQALQGAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELK 122
R + DL +K +L ALQ V FH A+P S +N +L + VN GTK VI+AC E
Sbjct: 49 RVQFFLGDLCNKEALLPALQDVSVAFHCASPAPSSDNKELFYKVNFMGTKAVIEACKEAG 108
Query: 123 VKRLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANGT-NGLLT 181
V++L+ TSS SVVF+G I NG E LPY K D+Y+ TK E V+ AN N T
Sbjct: 109 VQKLVLTSSASVVFEGTD-IKNGTEDLPYAKKPIDYYTETKILQEKEVLSANDPDNNFFT 167
Query: 182 CCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICAERALA 241
IRP IFGP D LVP L+ AA++GK KFIIGDG N+ DFTYV NV H HI A L
Sbjct: 168 TAIRPHGIFGPRDPQLVPILIQAAKSGKMKFIIGDGKNLVDFTYVENVVHGHILAAEHLR 227
Query: 242 SEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELTY 301
+ V G+A+ +TN E I FW F+S IL GL Y P+ IP ++ +A + L
Sbjct: 228 KDSPVC----GKAFHITNDEPIPFWAFMSRILTGLNYDAPKYYIPYWLAYYLALFLSLVL 283
Query: 302 RLLGPYGMKVPQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSYSHLR 360
LL P + P TP RV L + C +AK +GY P+V L+E I RT+ SY HLR
Sbjct: 284 WLLSPLIIIKPTFTPMRVALAGTFHYYSCERAKRDMGYKPVVSLDEAIDRTLQSYPHLR 342
|
|
| UNIPROTKB|Q15738 NSDHL "Sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 608 (219.1 bits), Expect = 2.7e-59, P = 2.7e-59
Identities = 130/292 (44%), Positives = 174/292 (59%)
Query: 70 DLRHKAQVLQALQGAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYT 129
DL + + AL+G VFH A+P S NN +L + VN GTKNVI+ C E V++LI T
Sbjct: 84 DLCSRQDLYPALKGVNTVFHCASPPPSSNNKELFYRVNYIGTKNVIETCKEAGVQKLILT 143
Query: 130 SSPSVVFDGVHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANGTN-GLLTCCIRPSS 188
SS SV+F+GV I NG E LPY K D+Y+ TK E V+ AN LT IRP
Sbjct: 144 SSASVIFEGVD-IKNGTEDLPYAMKPIDYYTETKILQERAVLGANDPEKNFLTTAIRPHG 202
Query: 189 IFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICAERALASEVTVAE 248
IFGP D LVP L+ AAR GK KF+IG+G N+ DFT+V NV H HI A L+ + T+
Sbjct: 203 IFGPRDPQLVPILIEAARNGKMKFVIGNGKNLVDFTFVENVVHGHILAAEQLSRDSTLG- 261
Query: 249 KAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELTYRLLGPYG 308
G+A+ +TN E I FW F+S IL GL Y+ P+ IP +V +A ++ L ++ P
Sbjct: 262 ---GKAFHITNDEPIPFWTFLSRILTGLNYEAPKYHIPYWVAYYLALLLSLLVMVISPVI 318
Query: 309 MKVPQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSYSHLR 360
P TP RV L + C +AK +GY P+V +++ ++RTV S+ HLR
Sbjct: 319 QLQPTFTPMRVALAGTFHYYSCERAKKAMGYQPLVTMDDAMERTVQSFRHLR 370
|
|
| MGI|MGI:1099438 Nsdhl "NAD(P) dependent steroid dehydrogenase-like" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 604 (217.7 bits), Expect = 7.3e-59, P = 7.3e-59
Identities = 131/301 (43%), Positives = 175/301 (58%)
Query: 63 RAHYVSFDLRHKAQVLQALQGAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELK 122
R + DL ++ + AL+G VFH A+P NN +L + VN GTK VI+ C E
Sbjct: 66 RVQFFIGDLCNQQDLYPALKGVSTVFHCASPPPYSNNKELFYRVNFIGTKTVIETCREAG 125
Query: 123 VKRLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANGTN-GLLT 181
V++LI TSS SVVF+GV I NG E LPY K D+Y+ TK E V+ AN LT
Sbjct: 126 VQKLILTSSASVVFEGVD-IKNGTEDLPYAMKPIDYYTETKILQERAVLDANDPKKNFLT 184
Query: 182 CCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICAERALA 241
IRP IFGP D LVP L+ AAR GK KF+IG+G N+ DFT+V NV H HI A L+
Sbjct: 185 AAIRPHGIFGPRDPQLVPILIDAARKGKMKFMIGNGENLVDFTFVENVVHGHILAAEHLS 244
Query: 242 SEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELTY 301
+ + G+A+ +TN E I FW F+S IL GL Y+ P+ IP ++ +A ++ L
Sbjct: 245 QDAALG----GKAFHITNDEPIPFWTFLSRILTGLNYEAPKYHIPYWMAYYLAFLLSLLV 300
Query: 302 RLLGPYGMKVPQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSYSHLRA 361
++ P P TP RV L + C KAK L GY P+V ++E ++RTV S+ HLR
Sbjct: 301 MVVSPLIQIQPTFTPIRVALAGTFHYYSCEKAKKLFGYRPLVTMDEAVERTVQSFHHLRK 360
Query: 362 E 362
+
Sbjct: 361 D 361
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q67ZE1 | HSDD2_ARATH | 1, ., 1, ., 1, ., 1, 7, 0 | 0.7380 | 0.9917 | 0.8528 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| Your Input: | |||||||||||
| GSVIVG00032305001 | SubName- Full=Chromosome chr4 scaffold_6, whole genome shotgun sequence; (570 aa) | ||||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 485 | |||
| cd09813 | 335 | cd09813, 3b-HSD-NSDHL-like_SDR_e, human NSDHL (NAD | 1e-160 | |
| cd05241 | 331 | cd05241, 3b-HSD-like_SDR_e, 3beta-hydroxysteroid d | 3e-95 | |
| pfam01073 | 280 | pfam01073, 3Beta_HSD, 3-beta hydroxysteroid dehydr | 1e-85 | |
| cd09812 | 339 | cd09812, 3b-HSD_like_1_SDR_e, 3beta-hydroxysteroid | 1e-58 | |
| cd09811 | 354 | cd09811, 3b-HSD_HSDB1_like_SDR_e, human 3beta-HSD | 6e-50 | |
| cd05228 | 318 | cd05228, AR_FR_like_1_SDR_e, uncharacterized subgr | 7e-50 | |
| COG0451 | 314 | COG0451, WcaG, Nucleoside-diphosphate-sugar epimer | 1e-47 | |
| cd05256 | 304 | cd05256, UDP_AE_SDR_e, UDP-N-acetylglucosamine 4-e | 9e-40 | |
| cd05257 | 316 | cd05257, Arna_like_SDR_e, Arna decarboxylase_like, | 3e-30 | |
| cd08946 | 200 | cd08946, SDR_e, extended (e) SDRs | 2e-29 | |
| pfam01370 | 233 | pfam01370, Epimerase, NAD dependent epimerase/dehy | 8e-29 | |
| cd05232 | 303 | cd05232, UDP_G4E_4_SDR_e, UDP-glucose 4 epimerase, | 1e-23 | |
| TIGR03466 | 328 | TIGR03466, HpnA, hopanoid-associated sugar epimera | 6e-22 | |
| cd05264 | 300 | cd05264, UDP_G4E_5_SDR_e, UDP-glucose 4-epimerase | 1e-20 | |
| cd05246 | 315 | cd05246, dTDP_GD_SDR_e, dTDP-D-glucose 4,6-dehydra | 6e-20 | |
| cd05271 | 273 | cd05271, NDUFA9_like_SDR_a, NADH dehydrogenase (ub | 9e-20 | |
| cd05263 | 293 | cd05263, MupV_like_SDR_e, Pseudomonas fluorescens | 3e-18 | |
| TIGR04180 | 297 | TIGR04180, EDH_00030, NAD dependent epimerase/dehy | 6e-18 | |
| cd05234 | 305 | cd05234, UDP_G4E_2_SDR_e, UDP-glucose 4 epimerase, | 2e-17 | |
| cd05253 | 332 | cd05253, UDP_GE_SDE_e, UDP glucuronic acid epimera | 2e-17 | |
| cd05273 | 328 | cd05273, GME-like_SDR_e, Arabidopsis thaliana GDP- | 9e-17 | |
| cd08958 | 293 | cd08958, FR_SDR_e, flavonoid reductase (FR), exten | 2e-15 | |
| pfam07993 | 245 | pfam07993, NAD_binding_4, Male sterility protein | 3e-15 | |
| pfam02453 | 164 | pfam02453, Reticulon, Reticulon | 4e-15 | |
| cd05226 | 176 | cd05226, SDR_e_a, Extended (e) and atypical (a) SD | 7e-15 | |
| cd05227 | 301 | cd05227, AR_SDR_e, aldehyde reductase, extended (e | 1e-14 | |
| TIGR01181 | 317 | TIGR01181, dTDP_gluc_dehyt, dTDP-glucose 4,6-dehyd | 3e-14 | |
| cd05260 | 316 | cd05260, GDP_MD_SDR_e, GDP-mannose 4,6 dehydratase | 1e-13 | |
| cd05240 | 306 | cd05240, UDP_G4E_3_SDR_e, UDP-glucose 4 epimerase | 1e-12 | |
| cd05254 | 280 | cd05254, dTDP_HR_like_SDR_e, dTDP-6-deoxy-L-lyxo-4 | 4e-12 | |
| pfam13460 | 182 | pfam13460, NAD_binding_10, NADH(P)-binding | 6e-12 | |
| cd05230 | 305 | cd05230, UGD_SDR_e, UDP-glucuronate decarboxylase | 8e-12 | |
| COG1088 | 340 | COG1088, RfbB, dTDP-D-glucose 4,6-dehydratase [Cel | 1e-11 | |
| cd05262 | 291 | cd05262, SDR_a7, atypical (a) SDRs, subgroup 7 | 1e-10 | |
| PLN02260 | 668 | PLN02260, PLN02260, probable rhamnose biosynthetic | 3e-10 | |
| cd05193 | 295 | cd05193, AR_like_SDR_e, aldehyde reductase, flavon | 1e-09 | |
| cd05229 | 302 | cd05229, SDR_a3, atypical (a) SDRs, subgroup 3 | 2e-09 | |
| PLN02986 | 322 | PLN02986, PLN02986, cinnamyl-alcohol dehydrogenase | 2e-09 | |
| cd05265 | 250 | cd05265, SDR_a1, atypical (a) SDRs, subgroup 1 | 2e-09 | |
| PLN02662 | 322 | PLN02662, PLN02662, cinnamyl-alcohol dehydrogenase | 3e-09 | |
| TIGR01179 | 328 | TIGR01179, galE, UDP-glucose-4-epimerase GalE | 6e-09 | |
| cd05239 | 300 | cd05239, GDP_FS_SDR_e, GDP-fucose synthetase, exte | 7e-09 | |
| cd05235 | 290 | cd05235, SDR_e1, extended (e) SDRs, subgroup 1 | 2e-08 | |
| cd05258 | 337 | cd05258, CDP_TE_SDR_e, CDP-tyvelose 2-epimerase, e | 3e-08 | |
| PRK10217 | 355 | PRK10217, PRK10217, dTDP-glucose 4,6-dehydratase; | 3e-08 | |
| TIGR01746 | 367 | TIGR01746, Thioester-redct, thioester reductase do | 3e-08 | |
| cd05247 | 323 | cd05247, UDP_G4E_1_SDR_e, UDP-glucose 4 epimerase, | 4e-08 | |
| cd05252 | 336 | cd05252, CDP_GD_SDR_e, CDP-D-glucose 4,6-dehydrata | 2e-07 | |
| COG3320 | 382 | COG3320, COG3320, Putative dehydrogenase domain of | 5e-07 | |
| COG1091 | 281 | COG1091, RfbD, dTDP-4-dehydrorhamnose reductase [C | 8e-07 | |
| PRK05865 | 854 | PRK05865, PRK05865, hypothetical protein; Provisio | 8e-07 | |
| pfam04321 | 284 | pfam04321, RmlD_sub_bind, RmlD substrate binding d | 2e-06 | |
| cd05237 | 287 | cd05237, UDP_invert_4-6DH_SDR_e, UDP-Glcnac (UDP-l | 2e-06 | |
| TIGR02622 | 349 | TIGR02622, CDP_4_6_dhtase, CDP-glucose 4,6-dehydra | 3e-06 | |
| pfam02719 | 280 | pfam02719, Polysacc_synt_2, Polysaccharide biosynt | 3e-06 | |
| PLN02695 | 370 | PLN02695, PLN02695, GDP-D-mannose-3',5'-epimerase | 3e-06 | |
| TIGR03589 | 324 | TIGR03589, PseB, UDP-N-acetylglucosamine 4,6-dehyd | 4e-06 | |
| PLN02896 | 353 | PLN02896, PLN02896, cinnamyl-alcohol dehydrogenase | 5e-06 | |
| PLN00198 | 338 | PLN00198, PLN00198, anthocyanidin reductase; Provi | 8e-06 | |
| COG1086 | 588 | COG1086, COG1086, Predicted nucleoside-diphosphate | 1e-05 | |
| cd05238 | 305 | cd05238, Gne_like_SDR_e, Escherichia coli Gne (a n | 1e-05 | |
| PRK07201 | 657 | PRK07201, PRK07201, short chain dehydrogenase; Pro | 1e-05 | |
| cd05236 | 320 | cd05236, FAR-N_SDR_e, fatty acyl CoA reductases (F | 2e-05 | |
| COG1087 | 329 | COG1087, GalE, UDP-glucose 4-epimerase [Cell envel | 2e-05 | |
| PLN02214 | 342 | PLN02214, PLN02214, cinnamoyl-CoA reductase | 4e-05 | |
| PRK15181 | 348 | PRK15181, PRK15181, Vi polysaccharide biosynthesis | 4e-05 | |
| cd05243 | 203 | cd05243, SDR_a5, atypical (a) SDRs, subgroup 5 | 6e-05 | |
| PLN02240 | 352 | PLN02240, PLN02240, UDP-glucose 4-epimerase | 1e-04 | |
| PRK10084 | 352 | PRK10084, PRK10084, dTDP-glucose 4,6 dehydratase; | 1e-04 | |
| PLN02686 | 367 | PLN02686, PLN02686, cinnamoyl-CoA reductase | 2e-04 | |
| cd05244 | 207 | cd05244, BVR-B_like_SDR_a, biliverdin IX beta redu | 2e-04 | |
| cd05251 | 242 | cd05251, NmrA_like_SDR_a, NmrA (a transcriptional | 3e-04 | |
| cd05248 | 317 | cd05248, ADP_GME_SDR_e, ADP-L-glycero-D-mannohepto | 4e-04 | |
| pfam05368 | 232 | pfam05368, NmrA, NmrA-like family | 0.002 | |
| COG0702 | 275 | COG0702, COG0702, Predicted nucleoside-diphosphate | 0.002 | |
| TIGR04130 | 337 | TIGR04130, FnlA, UDP-N-acetylglucosamine 4,6-dehyd | 0.003 | |
| TIGR02197 | 314 | TIGR02197, heptose_epim, ADP-L-glycero-D-manno-hep | 0.003 | |
| cd08953 | 436 | cd08953, KR_2_SDR_x, ketoreductase (KR), subgroup | 0.004 |
| >gnl|CDD|187673 cd09813, 3b-HSD-NSDHL-like_SDR_e, human NSDHL (NAD(P)H steroid dehydrogenase-like protein)-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 456 bits (1174), Expect = e-160
Identities = 176/351 (50%), Positives = 230/351 (65%), Gaps = 21/351 (5%)
Query: 10 CVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSF 69
C+V GG GF RHLVE L+R +V + D+ + L+P SGR + +
Sbjct: 2 CLVVGGSGFLGRHLVEQLLRRGNPTVHVFDIRPTFELDPS----------SSGRVQFHTG 51
Query: 70 DLRHKAQVLQAL--QGAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLI 127
DL + +A +G VVFH A+P+ N+ L++ VNV+GT+NVI+AC + VK+L+
Sbjct: 52 DLTDPQDLEKAFNEKGPNVVFHTASPDHGSND-DLYYKVNVQGTRNVIEACRKCGVKKLV 110
Query: 128 YTSSPSVVFDGVHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANG-TNGLLTCCIRP 186
YTSS SVVF+G IING+E+LPYP KH D Y+ TKA E LV+KAN +GLLTC +RP
Sbjct: 111 YTSSASVVFNG-QDIINGDESLPYPDKHQDAYNETKALAEKLVLKANDPESGLLTCALRP 169
Query: 187 SSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICAERALASEVTV 246
+ IFGPGDR LVP L+ AA+ GK+KF IGDGNN++DFTYV NVAHAHI A AL S
Sbjct: 170 AGIFGPGDRQLVPGLLKAAKNGKTKFQIGDGNNLFDFTYVENVAHAHILAADALLSSSH- 228
Query: 247 AEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQR-PRIKIPAFVMMPIAHMVELTYRLLG 305
AE AG+A+F+TN E I FW+F I EGLGY+R P IK+P V + +A ++E T ++LG
Sbjct: 229 AETVAGEAFFITNDEPIYFWDFARAIWEGLGYERPPSIKLPRPVALYLASLLEWTCKVLG 288
Query: 306 PYGMKVPQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSY 356
P TP RV LL +R F+ KAK LGY P+V LEEGI+RT+ +
Sbjct: 289 KE----PTFTPFRVALLCSTRYFNIEKAKKRLGYTPVVTLEEGIERTLQWF 335
|
This subgroup includes human NSDHL and related proteins. These proteins have the characteristic active site tetrad of extended SDRs, and also have a close match to their NAD(P)-binding motif. Human NSDHL is a 3beta-hydroxysteroid dehydrogenase (3 beta-HSD) which functions in the cholesterol biosynthetic pathway. 3 beta-HSD catalyzes the oxidative conversion of delta 5-3 beta-hydroxysteroids to the delta 4-3-keto configuration; this activity is essential for the biosynthesis of all classes of hormonal steroids. Mutations in the gene encoding NSDHL cause CHILD syndrome (congenital hemidysplasia with ichthyosiform nevus and limb defects), an X-linked dominant, male-lethal trait. This subgroup also includes an unusual bifunctional [3beta-hydroxysteroid dehydrogenase (3b-HSD)/C-4 decarboxylase from Arabidopsis thaliana, and Saccharomyces cerevisiae ERG26, a 3b-HSD/C-4 decarboxylase, involved in the synthesis of ergosterol, the major sterol of yeast. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid sythase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 335 |
| >gnl|CDD|187552 cd05241, 3b-HSD-like_SDR_e, 3beta-hydroxysteroid dehydrogenases (3b-HSD)-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 290 bits (745), Expect = 3e-95
Identities = 137/348 (39%), Positives = 188/348 (54%), Gaps = 19/348 (5%)
Query: 10 CVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSF 69
+VTGG GF LV+ L+ VR D++ E ++
Sbjct: 2 VLVTGGSGFFGERLVKQLLERGGTYVRSFDIAPP--GEALSAWQHPN-------IEFLKG 52
Query: 70 DLRHKAQVLQALQGAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYT 129
D+ + V QAL GA+ VFH AA L+ VNV GT+NV+DAC V++ +YT
Sbjct: 53 DITDRNDVEQALSGADCVFHTAAIVPLAGPRDLYWEVNVGGTQNVLDACQRCGVQKFVYT 112
Query: 130 SSPSVVFDGVHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANGTNGLLTCCIRPSSI 189
SS SV+F G I NG+E LPYPP +D Y+ TKA E +V++ANG + LLTC +RP+ I
Sbjct: 113 SSSSVIFGG-QNIHNGDETLPYPPLDSDMYAETKAIAEIIVLEANGRDDLLTCALRPAGI 171
Query: 190 FGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICAERALASEVTVAEK 249
FGPGD+ LVP L A G KF+ G GNN+ DFTYV N+AHAHI A AL +
Sbjct: 172 FGPGDQGLVPILFEWAEKGLVKFVFGRGNNLVDFTYVHNLAHAHILAAAAL----VKGKT 227
Query: 250 AAGQAYFVTNMESIKFWEFVSLILEGLGY-QRPRIKIPAFVMMPIAHMVELTYRLLGPYG 308
+GQ YF+T+ E +E + + + LG+ RP+I++ + A + EL +LGPY
Sbjct: 228 ISGQTYFITDAEPHNMFELLRPVWKALGFGSRPKIRLSGPLAYCAALLSELVSFMLGPY- 286
Query: 309 MKVPQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSY 356
+P VR L F +KA+ LGY P EEG+ T++ Y
Sbjct: 287 ---FVFSPFYVRALVTPMYFSIAKAQKDLGYAPRYSNEEGLIETLNWY 331
|
Extended SDR family domains belonging to this subgroup have the characteristic active site tetrad and a fairly well-conserved NAD(P)-binding motif. 3b-HSD catalyzes the NAD-dependent conversion of various steroids, such as pregnenolone to progesterone, or androstenediol to testosterone. This subgroup includes an unusual bifunctional 3b-HSD/C-4 decarboxylase from Arabidopsis thaliana, and Saccharomyces cerevisiae ERG26, a 3b-HSD/C-4 decarboxylase, involved in the synthesis of ergosterol, the major sterol of yeast. It also includes human 3 beta-HSD/HSD3B1 and C(27) 3beta-HSD/ [3beta-hydroxy-delta(5)-C(27)-steroid oxidoreductase; HSD3B7]. C(27) 3beta-HSD/HSD3B7 is a membrane-bound enzyme of the endoplasmic reticulum, that catalyzes the isomerization and oxidation of 7alpha-hydroxylated sterol intermediates, an early step in bile acid biosynthesis. Mutations in the human NSDHL (NAD(P)H steroid dehydrogenase-like protein) cause CHILD syndrome (congenital hemidysplasia with ichthyosiform nevus and limb defects), an X-linked dominant, male-lethal trait. Mutations in the human gene encoding C(27) 3beta-HSD underlie a rare autosomal recessive form of neonatal cholestasis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid sythase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 331 |
| >gnl|CDD|216283 pfam01073, 3Beta_HSD, 3-beta hydroxysteroid dehydrogenase/isomerase family | Back alignment and domain information |
|---|
Score = 264 bits (677), Expect = 1e-85
Identities = 115/288 (39%), Positives = 156/288 (54%), Gaps = 21/288 (7%)
Query: 11 VVTGGRGFAARHLVEMLIRYD-MFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSF 69
+VTGG GF RH+V +L+R + VR+ DL S +L + + Y+
Sbjct: 1 LVTGGGGFLGRHIVRLLLREGELQEVRVFDLRFS--------PELLEDFSKLQVITYIEG 52
Query: 70 DLRHKAQVLQALQGAEVVFHMAA--PNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLI 127
D+ K + +ALQG++VV H AA VNV+GT+NV+DAC + V+ L+
Sbjct: 53 DVTDKQDLRRALQGSDVVIHTAAIIDVFGKAYRDTIMKVNVKGTQNVLDACVKAGVRVLV 112
Query: 128 YTSSPSVVFDGVHG--IINGNEALPYPPKHNDFYSATKAEGEALVIKANGT---NG--LL 180
YTSS VV +G I+NG+E PY H D Y +KA E LV+KANG+ NG L
Sbjct: 113 YTSSMEVVGPNSYGQPIVNGDETTPYESTHQDPYPESKALAEKLVLKANGSTLKNGGRLY 172
Query: 181 TCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICAERAL 240
TC +RP+ IFG GD L P LV + G +KF GD N + D YV NVA AHI A RAL
Sbjct: 173 TCALRPAGIFGEGDPFLFPFLVRLLKNGLAKFRTGDKNVLSDRVYVGNVAWAHILAARAL 232
Query: 241 ASEVTVAEKAAGQAYFVTNMESIK-FWEFVSLILEGLGYQRP-RIKIP 286
A AGQ YF+++ + +F +L+ LG + P IK+P
Sbjct: 233 QDPKK-ASSIAGQFYFISDDTPHNSYDDFNRTLLKALGLRLPSSIKLP 279
|
The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyzes the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. Length = 280 |
| >gnl|CDD|187672 cd09812, 3b-HSD_like_1_SDR_e, 3beta-hydroxysteroid dehydrogenase (3b-HSD)-like, subgroup1, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 196 bits (500), Expect = 1e-58
Identities = 105/288 (36%), Positives = 162/288 (56%), Gaps = 14/288 (4%)
Query: 65 HYVSFDLRHKAQVLQALQGAEVVFHMAAPNSSIN---NHKLHHSVNVEGTKNVIDACAEL 121
++ D+R +Q+ +A+ G + VFH+A+ S N +L +NV GT+N+I C
Sbjct: 43 KFIQADVRDLSQLEKAVAGVDCVFHIASYGMSGREQLNRELIEEINVRGTENIIQVCVRR 102
Query: 122 KVKRLIYTSSPSVVFDGVHGIINGNEALPYPP--KHNDFYSATKAEGEALVIKANGT--- 176
+V RLIYTS+ +V+F G I NG+E+LPY P H D YS TK+ E LV+KAN
Sbjct: 103 RVPRLIYTSTFNVIFGG-QPIRNGDESLPYLPLDLHVDHYSRTKSIAEQLVLKANNMPLP 161
Query: 177 --NGLL-TCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAH 233
G+L TC +RP+ I+GPG++ +P +V+ G F+ GD ++ +F +V N+ AH
Sbjct: 162 NNGGVLRTCALRPAGIYGPGEQRHLPRIVSYIEKGLFMFVYGDPKSLVEFVHVDNLVQAH 221
Query: 234 ICAERALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPI 293
I A AL + A+GQAYF+++ + +EF ++EGLGY P +++P ++
Sbjct: 222 ILAAEALTTAK--GYIASGQAYFISDGRPVNNFEFFRPLVEGLGYSFPSLRLPLSLVYFF 279
Query: 294 AHMVELTYRLLGPYGMKVPQLTPSRVRLLSCSRTFDCSKAKDLLGYMP 341
A + E+ + LGP P LT + V + F KA+ LGY P
Sbjct: 280 AFLTEMVHFALGPICNFQPLLTRTEVYKTGVTHYFSIEKARAELGYEP 327
|
An uncharacterized subgroup of the 3b-HSD-like extended-SDR family. Proteins in this subgroup have the characteristic active site tetrad and NAD(P)-binding motif of extended-SDRs. 3 beta-HSD catalyzes the oxidative conversion of delta 5-3 beta-hydroxysteroids to the delta 4-3-keto configuration; this activity is essential for the biosynthesis of all classes of hormonal steroids. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid sythase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 339 |
| >gnl|CDD|187671 cd09811, 3b-HSD_HSDB1_like_SDR_e, human 3beta-HSD (hydroxysteroid dehydrogenase) and HSD3B1(delta 5-delta 4-isomerase)-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 173 bits (441), Expect = 6e-50
Identities = 112/362 (30%), Positives = 169/362 (46%), Gaps = 30/362 (8%)
Query: 10 CVVTGGRGFAARHLVEMLIRYD--MFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYV 67
C+VTGG GF +H++ +L+ + +R+ D + L H E+ + +
Sbjct: 2 CLVTGGGGFLGQHIIRLLLERKEELKEIRVLDKAFGPELIEHFEKSQGKTYVTD-----I 56
Query: 68 SFDLRHKAQVLQALQGAEVVFHMAAPNSSIN-----NHKLHHSVNVEGTKNVIDACAELK 122
D++ + + +A QG VV H AA ++ N++ VNV GT+ V++AC +
Sbjct: 57 EGDIKDLSFLFRACQGVSVVIHTAA---IVDVFGPPNYEELEEVNVNGTQAVLEACVQNN 113
Query: 123 VKRLIYTSSPSVVFDGVHG--IINGNEALPYPPKHNDFYSATKAEGEALVIKANGTN--- 177
VKRL+YTSS V G I NG E PY Y+++K E +V+ ANG
Sbjct: 114 VKRLVYTSSIEVAGPNFKGRPIFNGVEDTPYEDTSTPPYASSKLLAENIVLNANGAPLKQ 173
Query: 178 --GLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHIC 235
L+TC +RP I+G G L F G+ V YV NVA AHI
Sbjct: 174 GGYLVTCALRPMYIYGEGSHFLTEIFDFLLTNNGWLFPRIKGSGVNPLVYVGNVAWAHIL 233
Query: 236 AERALASEVTVAEKAA-GQAYFVTNMESIKFWE-FVSLILE--GLGYQRPRIKIPAFVMM 291
A +AL V +KA GQ YF+++ + F +L+ GL + +P F++
Sbjct: 234 AAKAL----QVPDKAIRGQFYFISDDTPHNSYSDFNYELLKELGLRLKTSWWYVPLFLLY 289
Query: 292 PIAHMVELTYRLLGPYGMKVPQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKR 351
+A ++E+ LL PY P+ V L + TF KA+ GYMP+ EE +R
Sbjct: 290 FLAFLLEIVSFLLRPYVKYRPRYNRHAVALTNSMFTFSYLKAQRHFGYMPLFSWEESKER 349
Query: 352 TV 353
T
Sbjct: 350 TA 351
|
This extended-SDR subgroup includes human 3 beta-HSD/HSD3B1 and C(27) 3beta-HSD/ [3beta-hydroxy-delta(5)-C(27)-steroid oxidoreductase; HSD3B7], and related proteins. These proteins have the characteristic active site tetrad and NAD(P)-binding motif of extended SDRs. 3 beta-HSD catalyzes the oxidative conversion of delta 5-3 beta-hydroxysteroids to the delta 4-3-keto configuration; this activity is essential for the biosynthesis of all classes of hormonal steroids. C(27) 3beta-HSD is a membrane-bound enzyme of the endoplasmic reticulum, it catalyzes the isomerization and oxidation of 7alpha-hydroxylated sterol intermediates, an early step in bile acid biosynthesis. Mutations in the human gene encoding C(27) 3beta-HSD underlie a rare autosomal recessive form of neonatal cholestasis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid sythase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 354 |
| >gnl|CDD|187539 cd05228, AR_FR_like_1_SDR_e, uncharacterized subgroup of aldehyde reductase and flavonoid reductase related proteins, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 172 bits (439), Expect = 7e-50
Identities = 106/350 (30%), Positives = 153/350 (43%), Gaps = 39/350 (11%)
Query: 12 VTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDL 71
VTG GF +LV L+ + VR S S A L V DL
Sbjct: 3 VTGATGFLGSNLVRALLAQG-YRVRALVRSGSDA-----------VLLDGLPVEVVEGDL 50
Query: 72 RHKAQVLQALQGAEVVFHMAAPNSSINNH-KLHHSVNVEGTKNVIDACAELKVKRLIYTS 130
A + A++G + VFH+AA S K + NVEGT+NV+DA E V+R+++TS
Sbjct: 51 TDAASLAAAMKGCDRVFHLAAFTSLWAKDRKELYRTNVEGTRNVLDAALEAGVRRVVHTS 110
Query: 131 SPSVVFDGVHGIINGNEALPYPP-KHNDFYSATKAEGEALVIKANGTNGLLTCCIRPSSI 189
S + + G I +E P+ + Y +K E V++A GL + PS++
Sbjct: 111 SIAALGGPPDGRI--DETTPWNERPFPNDYYRSKLLAELEVLEA-AAEGLDVVIVNPSAV 167
Query: 190 FGPGDRLLVPS--LVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICAERALASEVTVA 247
FGPGD + V GK G F V +VA HI A
Sbjct: 168 FGPGDEGPTSTGLDVLDYLNGKLPAYPPGG---TSFVDVRDVAEGHIAA----------M 214
Query: 248 EKA-AGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELTYRLLGP 306
EK G+ Y + E++ F + + E G + PR IP +++ +A + EL RL G
Sbjct: 215 EKGRRGERYILGG-ENLSFKQLFETLAEITGVKPPRRTIPPWLLKAVAALSELKARLTG- 272
Query: 307 YGMKVPQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSY 356
K P LTP R+L + + KA+ LGY PLEE ++ T+
Sbjct: 273 ---KPPLLTPRTARVLRRNYLYSSDKARRELGY-SPRPLEEALRDTLAWL 318
|
This subgroup contains proteins of unknown function related to aldehyde reductase and flavonoid reductase of the extended SDR-type. Aldehyde reductase I (aka carbonyl reductase) is an NADP-binding SDR; it has an NADP-binding motif consensus that is slightly different from the canonical SDR form and lacks the Asn of the extended SDR active site tetrad. Aldehyde reductase I catalyzes the NADP-dependent reduction of ethyl 4-chloro-3-oxobutanoate to ethyl (R)-4-chloro-3-hydroxybutanoate. The related flavonoid reductases act in the NADP-dependent reduction of flavonoids, ketone-containing plant secondary metabolites. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 318 |
| >gnl|CDD|223528 COG0451, WcaG, Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 166 bits (422), Expect = 1e-47
Identities = 94/364 (25%), Positives = 142/364 (39%), Gaps = 65/364 (17%)
Query: 11 VVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFD 70
+VTGG GF HLVE L+ VR D G +V D
Sbjct: 4 LVTGGAGFIGSHLVERLLAAG-HDVRGLDRLRD------------GLDPLLSGVEFVVLD 50
Query: 71 LRHKAQVLQALQGA-EVVFHMAA----PNSSINNHKLHHSVNVEGTKNVIDACAELKVKR 125
L + V + +G + V H+AA P+S+ ++ VNV+GT N+++A VKR
Sbjct: 51 LTDRDLVDELAKGVPDAVIHLAAQSSVPDSNASDPAEFLDVNVDGTLNLLEAARAAGVKR 110
Query: 126 LIYTSSPSVVFDGVHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANGTNGLLTCCIR 185
++ SS SVV+ + +E L PP+ + Y +K E L+ GL +R
Sbjct: 111 FVFASSVSVVYGDPPPLP-IDEDL-GPPRPLNPYGVSKLAAEQLLRAYARLYGLPVVILR 168
Query: 186 PSSIFGPGDRLLVPSLVA------AARAGKSKFIIGDGNNVYDFTYVANVAHAHICAERA 239
P +++GPGD+ + S V + I GDG+ DF YV +VA A + A
Sbjct: 169 PFNVYGPGDKPDLSSGVVSAFIRQLLKGEPIIVIGGDGSQTRDFVYVDDVADALLLA--- 225
Query: 240 LASEVTVAEKAAGQAYFVTN-MESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVE 298
E G + + + I E + E +G + P I
Sbjct: 226 -------LENPDGGVFNIGSGTAEITVRELAEAVAEAVGSKAPLIV-------------- 264
Query: 299 LTYRLLGPYGMKVPQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSYSH 358
+ R L + D SKA+ LG+ P V LEEG+ T++
Sbjct: 265 --------------YIPLGRRGDLREGKLLDISKARAALGWEPKVSLEEGLADTLEWLLK 310
Query: 359 LRAE 362
Sbjct: 311 KLEL 314
|
Length = 314 |
| >gnl|CDD|187566 cd05256, UDP_AE_SDR_e, UDP-N-acetylglucosamine 4-epimerase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 145 bits (368), Expect = 9e-40
Identities = 100/362 (27%), Positives = 140/362 (38%), Gaps = 74/362 (20%)
Query: 10 CVVTGGRGFAARHLVEMLIRYDMFSVRIADLS--DSIALEPHEEQGILGEALRSGRAHYV 67
+VTGG GF HLVE L+ + + +LS L + ++
Sbjct: 2 VLVTGGAGFIGSHLVERLLERGHEVIVLDNLSTGKKENLPEVKP-----------NVKFI 50
Query: 68 SFDLRHKAQVLQALQGAEVVFHMAAPNS---SINNHKLHHSVNVEGTKNVIDACAELKVK 124
D+R V A +G + VFH AA S SI + H VNV GT N+++A + VK
Sbjct: 51 EGDIRDDELVEFAFEGVDYVFHQAAQASVPRSIEDPIKDHEVNVLGTLNLLEAARKAGVK 110
Query: 125 RLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDF----YSATKAEGEALVIKANGTNGLL 180
R +Y SS SV LP H Y+ +K GE GL
Sbjct: 111 RFVYASSSSV--------YGDPPYLPKDEDHPPNPLSPYAVSKYAGELYCQVFARLYGLP 162
Query: 181 TCCIRPSSIFGPGDRL------LVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHI 234
T +R +++GP ++P + A G+ I GDG DFTYV +V A++
Sbjct: 163 TVSLRYFNVYGPRQDPNGGYAAVIPIFIERALKGEPPTIYGDGEQTRDFTYVEDVVEANL 222
Query: 235 CAERALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIA 294
A A A G+ Y + + E LI E LG +
Sbjct: 223 LAATA---------GAGGEVYNIGTGKRTSVNELAELIREILGKELE------------- 260
Query: 295 HMVELTYRLLGPYGMKVPQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVD 354
P P R + S D SKAK LLG+ P V EEG++ TV+
Sbjct: 261 -----------------PVYAPPRPGDVRHSL-ADISKAKKLLGWEPKVSFEEGLRLTVE 302
Query: 355 SY 356
+
Sbjct: 303 WF 304
|
This subgroup contains UDP-N-acetylglucosamine 4-epimerase of Pseudomonas aeruginosa, WbpP, an extended SDR, that catalyzes the NAD+ dependent conversion of UDP-GlcNAc and UDPGalNA to UDP-Glc and UDP-Gal. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 304 |
| >gnl|CDD|187567 cd05257, Arna_like_SDR_e, Arna decarboxylase_like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 119 bits (300), Expect = 3e-30
Identities = 91/353 (25%), Positives = 152/353 (43%), Gaps = 47/353 (13%)
Query: 11 VVTGGRGFAARHLVEMLIRYDMFSVR-IADLSDSIALEPHEEQGILGEALRSGRAHYVSF 69
+VTG GF HL E L+R VR + + G+L A+ R H++S
Sbjct: 3 LVTGADGFIGSHLTERLLREG-HEVRALDIYNSFN------SWGLLDNAVHD-RFHFISG 54
Query: 70 DLRHKAQVLQALQGAEVVFHMAAPNSSINNHKLHHSV---NVEGTKNVIDACAELKVKRL 126
D+R ++V ++ +VVFH+AA + ++ S NV GT NV++A L KR+
Sbjct: 55 DVRDASEVEYLVKKCDVVFHLAALIAIPYSYTAPLSYVETNVFGTLNVLEAACVLYRKRV 114
Query: 127 IYTSSPSVVFDGVHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANGTNGLLTCCIRP 186
++TS+ V I+ + L Y K YSA+K + L + GL IRP
Sbjct: 115 VHTSTSEVYGTAQDVPIDEDHPLLYINKPRSPYSASKQGADRLAYSYGRSFGLPVTIIRP 174
Query: 187 SSIFGPG--DRLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICAERALASEV 244
+ +GP R ++P++++ G+ +GDG+ DF +V + A I ++
Sbjct: 175 FNTYGPRQSARAVIPTIISQRAIGQRLINLGDGSPTRDFNFVKDTARGFI--------DI 226
Query: 245 TVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELTYRLL 304
A +A G+ + E I ++ + M+ I V +R
Sbjct: 227 LDAIEAVGEIINNGSGEEISIGNPAVELIVEELGE----------MVLI---VYDDHREY 273
Query: 305 GPYGMKVPQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSYS 357
P +V + P D KAK LLG+ P L +G++ T++ +
Sbjct: 274 RPGYSEVERRIP------------DIRKAKRLLGWEPKYSLRDGLRETIEWFK 314
|
Decarboxylase domain of ArnA. ArnA, is an enzyme involved in the modification of outer membrane protein lipid A of gram-negative bacteria. It is a bifunctional enzyme that catalyzes the NAD-dependent decarboxylation of UDP-glucuronic acid and N-10-formyltetrahydrofolate-dependent formylation of UDP-4-amino-4-deoxy-l-arabinose; its NAD-dependent decaboxylating activity is in the C-terminal 360 residues. This subgroup belongs to the extended SDR family, however the NAD binding motif is not a perfect match and the upstream Asn of the canonical active site tetrad is not conserved. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 316 |
| >gnl|CDD|212494 cd08946, SDR_e, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 113 bits (286), Expect = 2e-29
Identities = 62/234 (26%), Positives = 89/234 (38%), Gaps = 55/234 (23%)
Query: 10 CVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSF 69
+VTGG GF HLV L+ V + D D
Sbjct: 1 ILVTGGAGFIGSHLVRRLLE-RGHEVVVIDRLD--------------------------- 32
Query: 70 DLRHKAQVLQALQGAEVVFHMAA---PNSSINNHKLHHSVNVEGTKNVIDACAELKVKRL 126
VV H+AA +S +N NV GT N+++A + VKR
Sbjct: 33 ----------------VVVHLAALVGVPASWDNPDEDFETNVVGTLNLLEAARKAGVKRF 76
Query: 127 IYTSSPSVVFDGVHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANGTNGLLTCCIRP 186
+Y SS S V+ G E PP+ Y +K E L+ + GL +R
Sbjct: 77 VYASSAS-VYGSPEG---LPEEEETPPRPLSPYGVSKLAAEHLLRSYGESYGLPVVILRL 132
Query: 187 SSIFGPGDRL----LVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICA 236
++++GPG R +V + A GK + G GN DF +V +V A + A
Sbjct: 133 ANVYGPGQRPRLDGVVNDFIRRALEGKPLTVFGGGNQTRDFIHVDDVVRAILHA 186
|
Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 200 |
| >gnl|CDD|216461 pfam01370, Epimerase, NAD dependent epimerase/dehydratase family | Back alignment and domain information |
|---|
Score = 113 bits (284), Expect = 8e-29
Identities = 66/237 (27%), Positives = 98/237 (41%), Gaps = 29/237 (12%)
Query: 11 VVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFD 70
+VTGG GF HLV L++ + L E +L +GR + D
Sbjct: 2 LVTGGTGFIGSHLVRRLLQEG---YEVIVLG----RRRRSE------SLNTGRIRFHEGD 48
Query: 71 LRHKAQVLQALQGA--EVVFHMAA----PNSSINNHKLHHSVNVEGTKNVIDACAELKVK 124
L + + L + V H+AA S + + NV GT +++A VK
Sbjct: 49 LTDPDALERLLAEVQPDAVIHLAAQSGVGASFEDPADFIRA-NVLGTLRLLEAARRAGVK 107
Query: 125 RLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANGTNGLLTCCI 184
R ++ SS V D I E P P Y+A K E LV GL +
Sbjct: 108 RFVFASSSEVYGDVADPPIT--EDTPLGPLSP--YAAAKLAAERLVEAYARAYGLRAVIL 163
Query: 185 RPSSIFGPGDRL-----LVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICA 236
R +++GPG+ ++P+L+ GK ++GDG DF YV +VA A + A
Sbjct: 164 RLFNVYGPGNPDPFVTHVIPALIRRILEGKPILLLGDGTQRRDFLYVDDVARAILLA 220
|
This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions. Length = 233 |
| >gnl|CDD|187543 cd05232, UDP_G4E_4_SDR_e, UDP-glucose 4 epimerase, subgroup 4, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 100 bits (250), Expect = 1e-23
Identities = 86/351 (24%), Positives = 132/351 (37%), Gaps = 61/351 (17%)
Query: 12 VTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDL 71
VTG GF R LV+ L+ VRIA + E E +L E SF
Sbjct: 4 VTGANGFIGRALVDKLLSRGE-EVRIA--VRN--AENAEPSVVLAELPDID-----SFTD 53
Query: 72 RHKAQVLQALQGAEVVFHMAAPNSSINNHK-----LHHSVNVEGTKNVIDACAELKVKRL 126
G + V H+AA +N+ + VN E T+ + A A VKR
Sbjct: 54 --------LFLGVDAVVHLAARVHVMNDQGADPLSDYRKVNTELTRRLARAAARQGVKRF 105
Query: 127 IYTSSPSVVFDGVHGIINGNEALPY----PPKHNDFYSATKAEGEALVIKANGTNGLLTC 182
++ SS V G P+ PP D Y +K E E +++ ++G+
Sbjct: 106 VFLSSVKVN-------GEGTVGAPFDETDPPAPQDAYGRSKLEAERALLELGASDGMEVV 158
Query: 183 CIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHI-CAERALA 241
+RP ++GPG R L+ G G N + N+ A C
Sbjct: 159 ILRPPMVYGPGVRGNFARLMRLIDRG-LPLPPGAVKNRRSLVSLDNLVDAIYLCISL--- 214
Query: 242 SEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELTY 301
KAA + V++ + E V I LG + +PA ++
Sbjct: 215 ------PKAANGTFLVSDGPPVSTAELVDEIRRALGKPTRLLPVPAGLL-------RFAA 261
Query: 302 RLLGPYGMKVPQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRT 352
+LLG + ++ L S +D K ++ LG+ P + LEEG++ T
Sbjct: 262 KLLG---------KRAVIQRLFGSLQYDPEKTQNELGWRPPISLEEGLQET 303
|
UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. This subgroup is comprised of bacterial proteins, and includes the Staphylococcus aureus capsular polysaccharide Cap5N, which may have a role in the synthesis of UDP-N-acetyl-d-fucosamine. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 303 |
| >gnl|CDD|163279 TIGR03466, HpnA, hopanoid-associated sugar epimerase | Back alignment and domain information |
|---|
Score = 96.2 bits (240), Expect = 6e-22
Identities = 90/353 (25%), Positives = 145/353 (41%), Gaps = 47/353 (13%)
Query: 12 VTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDL 71
VTG GF +V +L+ VR+ S L V DL
Sbjct: 5 VTGATGFVGSAVVRLLLE-QGEEVRVLVRPTSDRRN-----------LEGLDVEIVEGDL 52
Query: 72 RHKAQVLQALQGAEVVFHMAA------PNSSINNHKLHHSVNVEGTKNVIDACAELKVKR 125
R A + +A+ G +FH+AA P+ ++ NVEGT+N++ A E V+R
Sbjct: 53 RDPASLRKAVAGCRALFHVAADYRLWAPDPEE-----MYAANVEGTRNLLRAALEAGVER 107
Query: 126 LIYTSSPSVVFDGVHGIINGNEALPYPPKHN-DFYSATKAEGEALVIKANGTNGLLTCCI 184
++YTSS + + G +E P Y +K E ++ GL +
Sbjct: 108 VVYTSSVATLGVRGDGTP-ADETTPSSLDDMIGHYKRSKFLAEQAALEMAAEKGLPVVIV 166
Query: 185 RPSSIFGPGDRLLVPS--LVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICAERALAS 242
PS+ GP D P+ ++ GK + G N+ V +VA H+ A
Sbjct: 167 NPSTPIGPRDIKPTPTGRIIVDFLNGKMPAYVDTGLNLVH---VDDVAEGHLLA------ 217
Query: 243 EVTVAEKA-AGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELTY 301
E+ G+ Y + E++ + + + E G PR+K+P ++++P+A E
Sbjct: 218 ----LERGRIGERYILGG-ENLTLKQILDKLAEITGRPAPRVKLPRWLLLPVAWGAEALA 272
Query: 302 RLLGPYGMKVPQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVD 354
RL G K P++T VR+ F +KA LGY P E ++ V+
Sbjct: 273 RLTG----KEPRVTVDGVRMAKKKMFFSSAKAVRELGYRQ-RPAREALRDAVE 320
|
The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnA was assigned. Hopanoids are known to be components of the plasma membrane and to have polar sugar head groups in Z. mobilis and other species. Length = 328 |
| >gnl|CDD|187574 cd05264, UDP_G4E_5_SDR_e, UDP-glucose 4-epimerase (G4E), subgroup 5, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 91.6 bits (228), Expect = 1e-20
Identities = 83/354 (23%), Positives = 139/354 (39%), Gaps = 72/354 (20%)
Query: 11 VVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFD 70
++ GG GF HLV+ L + VR+ D S L G Y+ D
Sbjct: 3 LIVGGNGFIGSHLVDAL-LEEGPQVRVFDRSIP------------PYELPLGGVDYIKGD 49
Query: 71 LRHKAQVLQALQGAEVVFHMAA---PNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLI 127
++A + AL G + V H+A+ P +S N L NV T +++ACA + ++I
Sbjct: 50 YENRADLESALVGIDTVIHLASTTNPATSNKNPILDIQTNVAPTVQLLEACAAAGIGKII 109
Query: 128 YTSSPSVVFDGVHGIINGNEALPYPPKH----NDFYSATKAEGEALVIKANGTNGLLTCC 183
+ SS V+ GV E LP Y +K E + GL
Sbjct: 110 FASSGGTVY-GVP------EQLPISESDPTLPISSYGISKLAIEKYLRLYQYLYGLDYTV 162
Query: 184 IRPSSIFGPGDRL-----LVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICAER 238
+R S+ +GPG R ++P + G+ I GDG ++ D+ Y+ ++ A +
Sbjct: 163 LRISNPYGPGQRPDGKQGVIPIALNKILRGEPIEIWGDGESIRDYIYIDDLVEALMA--- 219
Query: 239 ALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVE 298
+ + F N+ S G+GY + IA + +
Sbjct: 220 -------LLRSKGLEEVF--NIGS------------GIGYSLAEL---------IAEIEK 249
Query: 299 LTYRLLGPYGMKVPQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRT 352
+T R + ++ L D S+A+ LG+ P + LE+G+++T
Sbjct: 250 VTGRSVQVIYTPARTTDVPKIVL-------DISRARAELGWSPKISLEDGLEKT 296
|
This subgroup partially conserves the characteristic active site tetrad and NAD-binding motif of the extended SDRs, and has been identified as possible UDP-glucose 4-epimerase (aka UDP-galactose 4-epimerase), a homodimeric member of the extended SDR family. UDP-glucose 4-epimerase catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 300 |
| >gnl|CDD|187557 cd05246, dTDP_GD_SDR_e, dTDP-D-glucose 4,6-dehydratase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 89.9 bits (224), Expect = 6e-20
Identities = 99/363 (27%), Positives = 146/363 (40%), Gaps = 73/363 (20%)
Query: 11 VVTGGRGFAARHLV-EMLIRYDMFSVRIADL----SDSIALEPHEEQGILGEALRSGRAH 65
+VTGG GF + V +L +Y + + D + LE S R
Sbjct: 4 LVTGGAGFIGSNFVRYLLNKYPDYKIINLDKLTYAGNLENLEDVSS---------SPRYR 54
Query: 66 YVSFDLRHKAQVLQALQGAEV--VFHMAAP---NSSINNHKLHHSVNVEGTKNVIDACAE 120
+V D+ V + + ++ V H AA + SI++ + NV GT +++A +
Sbjct: 55 FVKGDICDAELVDRLFEEEKIDAVIHFAAESHVDRSISDPEPFIRTNVLGTYTLLEAARK 114
Query: 121 LKVKRLIYTSSPSVVFDGVHGII----NGNEALPYPPKHNDFYSATKAEGEALVIKANGT 176
VKR ++ S+ D V+G + E P P YSA+KA + LV + T
Sbjct: 115 YGVKRFVHIST-----DEVYGDLLDDGEFTETSPLAP--TSPYSASKAAADLLVRAYHRT 167
Query: 177 NGLLTCCIRPSSIFGPG--DRLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHI 234
GL R S+ +GP L+P + A GK I GDG NV D+ YV + A
Sbjct: 168 YGLPVVITRCSNNYGPYQFPEKLIPLFILNALDGKPLPIYGDGLNVRDWLYVEDHA---- 223
Query: 235 CAERALASEVTVAEKA-AGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPI 293
RA+ V EK G+ Y + + E V LILE LG I +V
Sbjct: 224 ---RAIE---LVLEKGRVGEIYNIGGGNELTNLELVKLILELLGKDESLIT---YVKDRP 274
Query: 294 AHMVELTYRLLGPYGMKVPQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTV 353
H + Y + D SK + LG+ P V EEG+++TV
Sbjct: 275 GH--DRRYAI-------------------------DSSKIRRELGWRPKVSFEEGLRKTV 307
Query: 354 DSY 356
Y
Sbjct: 308 RWY 310
|
This subgroup contains dTDP-D-glucose 4,6-dehydratase and related proteins, members of the extended-SDR family, with the characteristic Rossmann fold core region, active site tetrad and NAD(P)-binding motif. dTDP-D-glucose 4,6-dehydratase is closely related to other sugar epimerases of the SDR family. dTDP-D-dlucose 4,6,-dehydratase catalyzes the second of four steps in the dTDP-L-rhamnose pathway (the dehydration of dTDP-D-glucose to dTDP-4-keto-6-deoxy-D-glucose) in the synthesis of L-rhamnose, a cell wall component of some pathogenic bacteria. In many gram negative bacteria, L-rhamnose is an important constituent of lipopoylsaccharide O-antigen. The larger N-terminal portion of dTDP-D-Glucose 4,6-dehydratase forms a Rossmann fold NAD-binding domain, while the C-terminus binds the sugar substrate. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 315 |
| >gnl|CDD|187579 cd05271, NDUFA9_like_SDR_a, NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, subunit 9, 39 kDa, (NDUFA9) -like, atypical (a) SDRs | Back alignment and domain information |
|---|
Score = 88.5 bits (220), Expect = 9e-20
Identities = 82/321 (25%), Positives = 121/321 (37%), Gaps = 60/321 (18%)
Query: 10 CVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQ-GILGEALRSGRAHYVS 68
V G GF R++V L + S I E L G+ +V
Sbjct: 3 VTVFGATGFIGRYVVNRLAK---------RGSQVIVPYRCEAYARRLLVMGDLGQVLFVE 53
Query: 69 FDLRHKAQVLQALQGAEVVFHMAA-----PNSSINNHKLHHSVNVEGTKNVIDACAELKV 123
FDLR + +AL+G++VV ++ N S + V+VEG + + A E V
Sbjct: 54 FDLRDDESIRKALEGSDVVINLVGRLYETKNFSFED------VHVEGPERLAKAAKEAGV 107
Query: 124 KRLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANGTNGLLTCC 183
+RLI+ S+ + + P Y +KAEGE V +A
Sbjct: 108 ERLIHISA-----------LGADANSPSK------YLRSKAEGEEAVREA-----FPEAT 145
Query: 184 I-RPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICAERALAS 242
I RPS +FG DR L +IG G + YV +VA A RAL
Sbjct: 146 IVRPSVVFGREDRFL-NRFAKLLAFLPFPPLIGGGQTKFQPVYVGDVAEA---IARALKD 201
Query: 243 EVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELTYR 302
T G+ Y + + E V L+ G +R + +P ++ IA + L
Sbjct: 202 PET-----EGKTYELVGPKVYTLAELVELLRRLGGRKRRVLPLPLWLARLIARVKLL--- 253
Query: 303 LLGPYGMKVPQLTPSRVRLLS 323
LL P LT ++ L
Sbjct: 254 LLLPEPP----LTRDQLERLK 270
|
This subgroup of extended SDR-like proteins are atypical SDRs. They have a glycine-rich NAD(P)-binding motif similar to the typical SDRs, GXXGXXG, and have the YXXXK active site motif (though not the other residues of the SDR tetrad). Members identified include NDUFA9 (mitochondrial) and putative nucleoside-diphosphate-sugar epimerase. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 273 |
| >gnl|CDD|187573 cd05263, MupV_like_SDR_e, Pseudomonas fluorescens MupV-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 84.7 bits (210), Expect = 3e-18
Identities = 63/297 (21%), Positives = 103/297 (34%), Gaps = 29/297 (9%)
Query: 10 CVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSF 69
VTGG GF RHLV+ L+ ++ L S +L E+ R +
Sbjct: 1 VFVTGGTGFLGRHLVKRLLENG---FKVLVLVRSESLGEAHERIEEAGLEAD-RVRVLEG 56
Query: 70 DLRHK------AQVLQALQGAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKV 123
DL A + + V H AA ++ N++GT++V++ A L +
Sbjct: 57 DLTQPNLGLSAAASRELAGKVDHVIHCAASYDFQAPNEDAWRTNIDGTEHVLELAARLDI 116
Query: 124 KRLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANGTNGLLTCC 183
+R Y S+ V G L + Y +KAE E LV A L
Sbjct: 117 QRFHYVSTAYV--AGNREGNIRETELNPGQNFKNPYEQSKAEAEQLVRAAATQIPLTV-- 172
Query: 184 IRPSSIFGPG-----DRL--LVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICA 236
RPS + G +++ L L A+ G+ + G+ + V VA A +
Sbjct: 173 YRPSIVVGDSKTGRIEKIDGLYELLNLLAKLGRWLPMPGNKGARLNLVPVDYVADAIVYL 232
Query: 237 ERALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPI 293
+ +A GQ + +T+ E L + + +
Sbjct: 233 SK--------KPEANGQIFHLTDPTPQTLREIADLFKSAFLSPGLLVLLMNEPNASL 281
|
This subgroup of extended SDR family domains have the characteristic active site tetrad and a well-conserved NAD(P)-binding motif. This subgroup is not well characterized, its members are annotated as having a variety of putative functions. One characterized member is Pseudomonas fluorescens MupV a protein involved in the biosynthesis of Mupirocin, a polyketide-derived antibiotic. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 293 |
| >gnl|CDD|200431 TIGR04180, EDH_00030, NAD dependent epimerase/dehydratase, LLPSF_EDH_00030 family | Back alignment and domain information |
|---|
Score = 83.9 bits (208), Expect = 6e-18
Identities = 90/349 (25%), Positives = 144/349 (41%), Gaps = 76/349 (21%)
Query: 12 VTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAH--YVSF 69
VTG GF HLVE L+R + VR L +S G L + + V+
Sbjct: 3 VTGADGFIGSHLVEALVR-QGYEVRAFVLYNSFNS-----WGWLDTSPPEVKDKIEVVTG 56
Query: 70 DLRHKAQVLQALQGAEVVFHMAA----------PNSSINNHKLHHSVNVEGTKNVIDACA 119
D+R V +A++G +VVFH+AA P+S ++ NV GT NV+ A
Sbjct: 57 DIRDPDSVRKAMKGCDVVFHLAALIAIPYSYIAPDSYVDT-------NVTGTLNVLQAAR 109
Query: 120 ELKVKRLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANGTNGL 179
+L V+++++TS+ V G + +E P + YSA+K + L + +
Sbjct: 110 DLGVEKVVHTSTSEVY--GTAQYVPIDEKHPLQGQSP--YSASKIGADQLALSFYRSFNT 165
Query: 180 LTCCIRPSSIFGP--GDRLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICAE 237
IRP + +GP R ++P+++ +GK + +G + DF YV + I
Sbjct: 166 PVTIIRPFNTYGPRQSARAVIPTIITQIASGKRRIKLGSLSPTRDFNYVTDTVRGFI--- 222
Query: 238 RALASEVTVAEKAAGQAYFVTNMES---IKFWEFVSLILEGLGYQRPRIKIPAFV--MMP 292
+ ++K G+ V N+ S I + V LI E +G ++I + P
Sbjct: 223 -----AIAESDKTVGE---VINIGSNFEISIGDTVKLIAEIMG---SEVEIETDEERLRP 271
Query: 293 IAHMVELTYRLLGPYGMKVPQLTPSRVRLLSCSRTFDCSKAKDLLGYMP 341
VE RL D SK K+L G+ P
Sbjct: 272 EKSEVE---RLWC-----------------------DNSKIKELTGWQP 294
|
This clade within the NAD dependent epimerase/dehydratase superfamily (pfam01370) is characterized by inclusion of its members within a cassette of seven distinctive enzymes. These include four genes homologous to the elements of the neuraminic (sialic) acid biosynthesis cluster (NeuABCD), an aminotransferase and a nucleotidyltransferase in addition to the epimerase/dehydratase. Together it is very likely that these enzymes direct the biosynthesis of a nine-carbon sugar analagous to CMP-neuraminic acid. These seven genes form the core of the cassette, although they are often accompanied by additional genes that may further modify the product sugar. Although this cassette is widely distributed in bacteria, the family nomenclature arises from the instance in Leptospira interrogans serovar Lai, str. 56601, where it appears as the 30th gene in the 91-gene lipopolysaccharide biosynthesis cluster. Length = 297 |
| >gnl|CDD|187545 cd05234, UDP_G4E_2_SDR_e, UDP-glucose 4 epimerase, subgroup 2, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 82.3 bits (204), Expect = 2e-17
Identities = 93/356 (26%), Positives = 142/356 (39%), Gaps = 68/356 (19%)
Query: 11 VVTGGRGFAARHLVEMLIRYDMFSVRIAD-LS--DSIALEPHEEQGILGEALRSGRAHYV 67
+VTGG GF HLV+ L+ V + D LS +EP E +A R +
Sbjct: 3 LVTGGAGFIGSHLVDRLLEEG-NEVVVVDNLSSGRRENIEPEFEN----KAFRFVK---- 53
Query: 68 SFDLRHKAQVLQALQGAEVVFHMAAPNSSIN----NHKLHHSVNVEGTKNVIDACAELKV 123
DL A A + + VFH+AA N + + + NV T NV++A V
Sbjct: 54 -RDLLDTA-DKVAKKDGDTVFHLAA-NPDVRLGATDPDIDLEENVLATYNVLEAMRANGV 110
Query: 124 KRLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANGTNGLLTCC 183
KR+++ SS S V+ G +I E YPP Y A+K EAL I A
Sbjct: 111 KRIVFASS-STVY-GEAKVIPTPED--YPPLPISVYGASKLAAEAL-ISAYAHLFGFQAW 165
Query: 184 I-RPSSIFGPGDRL-LVPSLVAAARAGKSK-FIIGDGNNVYDFTYVANVAHAHICAERAL 240
I R ++I GP ++ + + ++ ++GDG + YV++ A + A
Sbjct: 166 IFRFANIVGPRSTHGVIYDFINKLKRNPNELEVLGDGRQRKSYLYVSDCVDAMLLAWEKS 225
Query: 241 ASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELT 300
V + + + N ++I E +++E LG +PR K
Sbjct: 226 TEGVNI--------FNLGNDDTISVNEIAEIVIEELGL-KPRFKYSG------------- 263
Query: 301 YRLLGPYGMK--VPQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVD 354
G G K VP + D K K LG+ P EE +++TV
Sbjct: 264 ----GDRGWKGDVPYM------------RLDIEKLK-ALGWKPRYNSEEAVRKTVR 302
|
UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. This subgroup is comprised of archaeal and bacterial proteins, and has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 305 |
| >gnl|CDD|187563 cd05253, UDP_GE_SDE_e, UDP glucuronic acid epimerase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 82.8 bits (205), Expect = 2e-17
Identities = 90/367 (24%), Positives = 143/367 (38%), Gaps = 64/367 (17%)
Query: 12 VTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDL 71
VTG GF H+ + L+ V I +L+D + ++ L +SG +V DL
Sbjct: 5 VTGAAGFIGFHVAKRLLERGDEVVGIDNLNDY--YDVRLKEARLELLGKSGGFKFVKGDL 62
Query: 72 --RHKAQVLQALQGAEVVFHMAAPNS---SINNHKLHHSVNVEGTKNVIDACAELKVKRL 126
R + L + V H+AA S+ N + N+ G N+++ C VK L
Sbjct: 63 EDREALRRLFKDHEFDAVIHLAAQAGVRYSLENPHAYVDSNIVGFLNLLELCRHFGVKHL 122
Query: 127 IYTSSPSVVFDGVHGIINGNEALPYPPKHN-----DFYSATKAEGEALVIKANGTNGLLT 181
+Y SS S V+G N +P+ Y+ATK E + + G+ T
Sbjct: 123 VYASSSS-----VYG---LNTKMPFSEDDRVDHPISLYAATKKANELMAHTYSHLYGIPT 174
Query: 182 CCIRPSSIFGPGDR--LLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICAERA 239
+R +++GP R + + A GK + DGN DFTY+ ++ + A
Sbjct: 175 TGLRFFTVYGPWGRPDMALFLFTKAILEGKPIDVFNDGNMSRDFTYIDDIVEGVVRALDT 234
Query: 240 LASE-----VTVAEKAAGQA----YFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVM 290
A + + A Y + N +K +F+ + + LG + K
Sbjct: 235 PAKPNPNWDAEAPDPSTSSAPYRVYNIGNNSPVKLMDFIEALEKALG--KKAKKN----Y 288
Query: 291 MPIAHMVELTYRLLGPYGMKVPQLTPSRVRLLSCSRTF-DCSKAKDLLGYMPIVPLEEGI 349
+P + V T+ D SK + LLGY P LEEG+
Sbjct: 289 LP---------------------MQKGDVP-----ETYADISKLQRLLGYKPKTSLEEGV 322
Query: 350 KRTVDSY 356
KR V+ Y
Sbjct: 323 KRFVEWY 329
|
This subgroup contains UDP-D-glucuronic acid 4-epimerase, an extended SDR, which catalyzes the conversion of UDP-alpha-D-glucuronic acid to UDP-alpha-D-galacturonic acid. This group has the SDR's canonical catalytic tetrad and the TGxxGxxG NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 332 |
| >gnl|CDD|187581 cd05273, GME-like_SDR_e, Arabidopsis thaliana GDP-mannose-3',5'-epimerase (GME)-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 81.0 bits (200), Expect = 9e-17
Identities = 89/360 (24%), Positives = 132/360 (36%), Gaps = 73/360 (20%)
Query: 12 VTGGRGFAARHLVEMLIRYDMFSVRIADL-SDSIALEPHEEQGILGEALRSGRAHYVSFD 70
VTG GF HL E L + VR AD S +P ++ D
Sbjct: 5 VTGAGGFIGSHLAERLKA-EGHYVRGADWKSPEHMTQPTDDDEFH------------LVD 51
Query: 71 LRHKAQVLQALQGAEVVFHMAAPNSSI----NNHKLHHSVNVEGTKNVIDACAELKVKRL 126
LR L+A +G + VFH+AA + +NH + N N+++A V+R
Sbjct: 52 LREMENCLKATEGVDHVFHLAADMGGMGYIQSNHAVIMYNNTLINFNMLEAARINGVERF 111
Query: 127 IYTSSPSVVFDGVHGIINGNEAL----PYPPKHNDFYSATKAEGEALVIKANGTNGLLTC 182
++ SS + V+ + L +P + D Y K E L N G+ T
Sbjct: 112 LFASS-ACVYPEFKQLETTVVRLREEDAWPAEPQDAYGWEKLATERLCQHYNEDYGIETR 170
Query: 183 CIRPSSIFGP-----GDRLLVPSL----VAAARAGKSKFIIGDGNNVYDFTYVANVAHAH 233
+R +I+GP G R P+ VA A+ G I GDG FTY+ +
Sbjct: 171 IVRFHNIYGPRGTWDGGREKAPAAMCRKVATAKDGDRFEIWGDGLQTRSFTYIDDCVEGL 230
Query: 234 ICAERALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPI 293
R + S+ N E ++L G +P
Sbjct: 231 R---RLMESDFGEPVNLGSDEMVSMN-------ELAEMVLSFSG--KP------------ 266
Query: 294 AHMVELTYRLLGPYGMKVPQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTV 353
+E+ + GP G VR R D + K+ LG+ P PLEEG++ T
Sbjct: 267 ---LEIIHHTPGPQG----------VR----GRNSDNTLLKEELGWEPNTPLEEGLRITY 309
|
This subgroup of NDP-sugar epimerase/dehydratases are extended SDRs; they have the characteristic active site tetrad, and an NAD-binding motif: TGXXGXX[AG], which is a close match to the canonical NAD-binding motif. Members include Arabidopsis thaliana GDP-mannose-3',5'-epimerase (GME) which catalyzes the epimerization of two positions of GDP-alpha-D-mannose to form GDP-beta-L-galactose. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 328 |
| >gnl|CDD|187661 cd08958, FR_SDR_e, flavonoid reductase (FR), extended (e) SDRs | Back alignment and domain information |
|---|
Score = 76.1 bits (188), Expect = 2e-15
Identities = 69/245 (28%), Positives = 108/245 (44%), Gaps = 35/245 (14%)
Query: 12 VTGGRGFAARHLVEMLIR--YDMFSVRIA--DLSDSIALEPHEEQGILGEALRSGRAHYV 67
VTG GF LV+ L++ Y +VR D D + H + L A R
Sbjct: 3 VTGASGFIGSWLVKRLLQRGY---TVRATVRDPGDEKKVA-HLLE--LEGA--KERLKLF 54
Query: 68 SFDLRHKAQVLQALQGAEVVFHMAAPNSSINNHKLHHSVN--VEGTKNVIDACAELK-VK 124
DL A+ G + VFH+A+P + + V+GT NV++ACA+ K VK
Sbjct: 55 KADLLDYGSFDAAIDGCDGVFHVASPVDFDSEDPEEEMIEPAVKGTLNVLEACAKAKSVK 114
Query: 125 RLIYTSSPS-VVFD---GVHGIINGNE--ALPYPPKHNDFY--SATKAEGEALVI-KANG 175
R+++TSS + VV++ G +++ + L + K +Y S T AE A + NG
Sbjct: 115 RVVFTSSVAAVVWNPNRGEGKVVDESCWSDLDFCKKTKLWYALSKTLAEKAAWEFAEENG 174
Query: 176 TNGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGD----GNNVYDFTYVANVAH 231
+ L+T PS + GP + + S + + G+ N +V +VA
Sbjct: 175 LD-LVTVN--PSLVVGPFLQPSLNSSSQLILS----LLKGNAEMYQNGSLALVHVDDVAD 227
Query: 232 AHICA 236
AHI
Sbjct: 228 AHILL 232
|
This subgroup contains FRs of the extended SDR-type and related proteins. These FRs act in the NADP-dependent reduction of flavonoids, ketone-containing plant secondary metabolites; they have the characteristic active site triad of the SDRs (though not the upstream active site Asn) and a NADP-binding motif that is very similar to the typical extended SDR motif. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 293 |
| >gnl|CDD|219687 pfam07993, NAD_binding_4, Male sterility protein | Back alignment and domain information |
|---|
Score = 74.9 bits (185), Expect = 3e-15
Identities = 61/265 (23%), Positives = 89/265 (33%), Gaps = 68/265 (25%)
Query: 12 VTGGRGFAARHLVEMLIR-------YDMFSVRIADLSDSIALEPHEEQGILGEALRSGRA 64
+TG GF + L+E L+R Y + VR D ++ E LR
Sbjct: 1 LTGATGFLGKVLLEKLLRSTPEVKIYCL--VRAKDGESAL------------ERLRQELL 46
Query: 65 HYVSFDLRHKAQVLQALQG--------------------AEVVFHMAAPNSSINNHKLHH 104
Y FD + + + G +V+ H AA N +
Sbjct: 47 KYGLFDRLKALERIIPVAGDLSEPNLGLSDEDFQELAEEVDVIIHNAA----TVNFVEPY 102
Query: 105 S----VNVEGTKNVIDACAELKVKRLIYTSSPSVVFDGVHG------IINGNEALPYPPK 154
S NV GT+ V+ ++K + S+ + V G +
Sbjct: 103 SDLRATNVLGTREVLRLAKQMKKLPFHHVST-AYVNGERGGLLEEKPYKLDEDEPALLGG 161
Query: 155 HNDFYSATKAEGEALVIKANGTNGLLTCCIRPSSIFG-------PGDRLLVPSLVAAARA 207
+ Y+ +K E LV +A G GL RPS I G GD L+ A
Sbjct: 162 LPNGYTQSKWLAEQLVREAAG--GLPVVIYRPSIITGESRTGWINGDDFGPRGLLGGAGL 219
Query: 208 GKSKFIIGDGNNVYDFT---YVANV 229
G I+GD + D YVAN
Sbjct: 220 GVLPDILGDPDARLDLVPVDYVANA 244
|
This family represents the C-terminal region of the male sterility protein in a number of arabidopsis and drosophila. A sequence-related jojoba acyl CoA reductase is also included. Length = 245 |
| >gnl|CDD|217046 pfam02453, Reticulon, Reticulon | Back alignment and domain information |
|---|
Score = 72.6 bits (179), Expect = 4e-15
Identities = 30/104 (28%), Positives = 49/104 (47%), Gaps = 2/104 (1%)
Query: 382 VADTLLWKDKKWTLTAVLILVAIYYIFIVPGYTIITAFSKLLLLMLIFLVIHSFLPEKIF 441
VAD LLW+D K + L+ I+ +F + GY++++ S LLLL+L + K+
Sbjct: 1 VADLLLWRDPKKSGVVFGSLLVIWLLFSLSGYSLLSVLSYLLLLLLAVTFLWRLAK-KLL 59
Query: 442 GYTLEKIPASSFHLSDEKSLRLAHSVASSWNTSITVLKSLSKGN 485
E LS+E +A S+ N ++ L+ L G
Sbjct: 60 NAVPEP-LDPDVTLSEETVEEIADSLRVLINKALKELRRLFLGE 102
|
Reticulon, also know as neuroendocrine-specific protein (NSP), is a protein of unknown function which associates with the endoplasmic reticulum. This family represents the C-terminal domain of the three reticulon isoforms and their homologues. Length = 164 |
| >gnl|CDD|187537 cd05226, SDR_e_a, Extended (e) and atypical (a) SDRs | Back alignment and domain information |
|---|
Score = 72.0 bits (177), Expect = 7e-15
Identities = 46/180 (25%), Positives = 72/180 (40%), Gaps = 28/180 (15%)
Query: 12 VTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDL 71
+ G GF R L L+ V + + + +E + E DL
Sbjct: 3 ILGATGFIGRALARELLEQG-HEVTLLVRNTKRLSKEDQEPVAVVEG-----------DL 50
Query: 72 RHKAQVLQALQGAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSS 131
R + A+QG +VV H+A + V+VEGT+NV++A E VK I+ SS
Sbjct: 51 RDLDSLSDAVQGVDVVIHLAGAPRDT---RDFCEVDVEGTRNVLEAAKEAGVKHFIFISS 107
Query: 132 PSVVFDGVHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANGTNGLLTCCIRPSSIFG 191
G+ P + Y A KA+ EA++ +A+ +RP I+G
Sbjct: 108 LGA---------YGDLHEETEPSPSSPYLAVKAKTEAVLREASLP----YTIVRPGVIYG 154
|
Extended or atypical short-chain dehydrogenases/reductases (SDRs, aka tyrosine-dependent oxidoreductases) are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 176 |
| >gnl|CDD|187538 cd05227, AR_SDR_e, aldehyde reductase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 74.2 bits (183), Expect = 1e-14
Identities = 86/345 (24%), Positives = 122/345 (35%), Gaps = 65/345 (18%)
Query: 12 VTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDL 71
VTG GF A H+VE L++ + VR + + L A + R +V D
Sbjct: 4 VTGATGFIASHIVEQLLKAG-YKVR-GTVRSLSKSAKLKAL--LKAAGYNDRLEFVIVDD 59
Query: 72 RHKAQVL-QALQGAEVVFHMAAPNSSINNHKLHH--SVNVEGTKNVIDACAELK-VKRLI 127
+AL+G + V H+A+P VEGT NV++A VKR++
Sbjct: 60 LTAPNAWDEALKGVDYVIHVASPFPFTGPDAEDDVIDPAVEGTLNVLEAAKAAGSVKRVV 119
Query: 128 YTSSPSVVFDGVHGIING-------NEALPYPPKHNDFYSATK--AEGEALVIKANGTNG 178
TSS + V D N+ D Y A+K AE A
Sbjct: 120 LTSSVAAVGDPTAEDPGKVFTEEDWNDLTISKSNGLDAYIASKTLAEKAAWEFVKENKPK 179
Query: 179 LLTCCIRPSSIFGPGDRLLVPS----LVAAARAGKSKFIIGDGNNVY-DFTYVANVAHAH 233
I P + GP + L+ GK I + Y D V +VA AH
Sbjct: 180 FELITINPGYVLGPSLLADELNSSNELINKLLDGKLPAIPPNLPFGYVD---VRDVADAH 236
Query: 234 ICAERALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPI 293
+ RAL S +AAGQ + V+ F E L+ E P
Sbjct: 237 V---RALES-----PEAAGQRFIVSA-GPFSFQEIADLLRE---------------EFP- 271
Query: 294 AHMVELTYRLLGPYGMKVPQLTPSRVRLLSCSRTFDCSKAKDLLG 338
+LT P + + L FD K+++LLG
Sbjct: 272 ----QLTAPFPAPNPLMLSILV-----------KFDNRKSEELLG 301
|
This subgroup contains aldehyde reductase of the extended SDR-type and related proteins. Aldehyde reductase I (aka carbonyl reductase) is an NADP-binding SDR; it has an NADP-binding motif consensus that is slightly different from the canonical SDR form and lacks the Asn of the extended SDR active site tetrad. Aldehyde reductase I catalyzes the NADP-dependent reduction of ethyl 4-chloro-3-oxobutanoate to ethyl (R)-4-chloro-3-hydroxybutanoate. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 301 |
| >gnl|CDD|130249 TIGR01181, dTDP_gluc_dehyt, dTDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Score = 73.2 bits (180), Expect = 3e-14
Identities = 93/358 (25%), Positives = 138/358 (38%), Gaps = 64/358 (17%)
Query: 12 VTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDL 71
VTGG GF + V ++ + + L D + + E L + + R +V D+
Sbjct: 4 VTGGAGFIGSNFVRYILN-EHPDAEVIVL-DKLTYAGNLEN--LADLEDNPRYRFVKGDI 59
Query: 72 RHKAQVLQALQGAEV--VFHMAAP---NSSINNHKLHHSVNVEGTKNVIDA-CAELKVKR 125
+ V + + V H AA + SI+ NV GT +++A R
Sbjct: 60 GDRELVSRLFTEHQPDAVVHFAAESHVDRSISGPAAFIETNVVGTYTLLEAVRKYWHEFR 119
Query: 126 LIYTSSPSVVFDGVHGIINGNEAL----PYPPKHNDFYSATKAEGEALVIKANGTNGLLT 181
+ S+ D V+G + +A P P + YSA+KA + LV + T GL
Sbjct: 120 FHHIST-----DEVYGDLEKGDAFTETTPLAP--SSPYSASKAASDHLVRAYHRTYGLPA 172
Query: 182 CCIRPSSIFGPGD--RLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICAERA 239
R S+ +GP L+P ++ A AGK + GDG V D+ YV + H RA
Sbjct: 173 LITRCSNNYGPYQFPEKLIPLMITNALAGKPLPVYGDGQQVRDWLYVED--HC-----RA 225
Query: 240 LASEVTVAEKA-AGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVE 298
+ V EK G+ Y + E V ILE LG I V H +
Sbjct: 226 IY---LVLEKGRVGETYNIGGGNERTNLEVVETILELLGKDEDLIT---HVEDRPGH--D 277
Query: 299 LTYRLLGPYGMKVPQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSY 356
Y + D SK K LG+ P EEG+++TV Y
Sbjct: 278 RRYAI-------------------------DASKIKRELGWAPKYTFEEGLRKTVQWY 310
|
This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 317 |
| >gnl|CDD|187570 cd05260, GDP_MD_SDR_e, GDP-mannose 4,6 dehydratase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 71.1 bits (175), Expect = 1e-13
Identities = 72/359 (20%), Positives = 130/359 (36%), Gaps = 62/359 (17%)
Query: 12 VTGGRGFAARHLVEMLIR--YDMFS-VRIADLSDSIALEPHEEQGILGEALRSGRAHYVS 68
+TG G +L E L+ Y++ VR + I + R
Sbjct: 4 ITGITGQDGSYLAEFLLEKGYEVHGIVRRS--------SSFNTDRIDHLYINKDRITLHY 55
Query: 69 FDLRHKAQVLQALQGA--EVVFHMAA---PNSSINNHKLHHSVNVEGTKNVIDACAELKV 123
DL + + +A++ + ++H+AA S ++ + VN GT N+++A L +
Sbjct: 56 GDLTDSSSLRRAIEKVRPDEIYHLAAQSHVKVSFDDPEYTAEVNAVGTLNLLEAIRILGL 115
Query: 124 KRLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANGTNGLLTCC 183
Y +S S + V + +E P+ P+ Y+ +K + + GL
Sbjct: 116 DARFYQASSSEEYGKVQELPQ-SETTPFRPRSP--YAVSKLYADWITRNYREAYGLFAVN 172
Query: 184 IRPSSIFGP--GDRLLVPSLV-AAAR--AGK-SKFIIGDGNNVYDFTYVANVAHAHICAE 237
R + GP G+ + + AR AG +G+ + D+ + A+
Sbjct: 173 GRLFNHEGPRRGETFVTRKITRQVARIKAGLQPVLKLGNLDAKRDWGDARDYVEAYW--- 229
Query: 238 RALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMV 297
+ ++ Y + E+ EFV L E G I +
Sbjct: 230 -------LLLQQGEPDDYVIATGETHSVREFVELAFEESGLTG-----------DIEVEI 271
Query: 298 ELTYRLLGPYGMKVPQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSY 356
+ Y P+ V LL D SKA++ LG+ P V EE ++ +D+
Sbjct: 272 DPRY------------FRPTEVDLLL----GDPSKAREELGWKPEVSFEELVREMLDAD 314
|
GDP-mannose 4,6 dehydratase, a homodimeric SDR, catalyzes the NADP(H)-dependent conversion of GDP-(D)-mannose to GDP-4-keto, 6-deoxy-(D)-mannose in the fucose biosynthesis pathway. These proteins have the canonical active site triad and NAD-binding pattern, however the active site Asn is often missing and may be substituted with Asp. A Glu residue has been identified as an important active site base. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 316 |
| >gnl|CDD|187551 cd05240, UDP_G4E_3_SDR_e, UDP-glucose 4 epimerase (G4E), subgroup 3, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 68.2 bits (167), Expect = 1e-12
Identities = 83/348 (23%), Positives = 131/348 (37%), Gaps = 63/348 (18%)
Query: 11 VVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALR-----SGRAH 65
+VTG G R L L G+ G R +
Sbjct: 2 LVTGAAGGLGRLLARRL------------------AASPRVIGVDGLDRRRPPGSPPKVE 43
Query: 66 YVSFDLRHKAQV-LQALQGAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVK 124
YV D+R A + + A+ V H+A + H +NV+GT+NV+DACA V
Sbjct: 44 YVRLDIRDPAAADVFREREADAVVHLAFILDPPRDGAERHRINVDGTQNVLDACAAAGVP 103
Query: 125 RLIYTSSPSVVFDGVHG----IINGNEALPYPPKHNDFYSATKAEGEALVIKANGTN-GL 179
R++ TSS +V G H + + L P+ YS KAE E L+ + + L
Sbjct: 104 RVVVTSSVAVY--GAHPDNPAPLTEDAPLRGSPEFA--YSRDKAEVEQLLAEFRRRHPEL 159
Query: 180 LTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICAERA 239
+RP++I GPG R + + + + G + + F + +VA A A
Sbjct: 160 NVTVLRPATILGPGTR----NTTRDFLSPRRLPVPGGFDPPFQFLHEDDVARA---LVLA 212
Query: 240 LASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVEL 299
+ + T AG +SL+L LG R + +P+ + +A L
Sbjct: 213 VRAGATGIFNVAGDG-----------PVPLSLVLALLG--RRPVPLPSPLPAALAAARRL 259
Query: 300 TYRLLGPYGMKVPQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEE 347
R L P ++ L D ++A+ LG+ P E
Sbjct: 260 GLRPLPPE----------QLDFLQYPPVMDTTRARVELGWQPKHTSAE 297
|
Members of this bacterial subgroup are identified as possible sugar epimerases, such as UDP-glucose 4 epimerase. However, while the NAD(P)-binding motif is fairly well conserved, not all members retain the canonical active site tetrad of the extended SDRs. UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 306 |
| >gnl|CDD|187564 cd05254, dTDP_HR_like_SDR_e, dTDP-6-deoxy-L-lyxo-4-hexulose reductase and related proteins, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 66.1 bits (162), Expect = 4e-12
Identities = 69/287 (24%), Positives = 110/287 (38%), Gaps = 64/287 (22%)
Query: 12 VTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSF-- 69
+TG G R LV +L +E G GR+ F
Sbjct: 4 ITGATGMLGRALVRLLKE-----------------RGYEVIGT-------GRSRASLFKL 39
Query: 70 DLRHKAQVLQALQGA--EVVFHMAA---PNSSINNHKLHHSVNVEGTKNVIDACAELKVK 124
DL V +A++ +V+ + AA + ++ +L + VNV +N+ A E+
Sbjct: 40 DLTDPDAVEEAIRDYKPDVIINCAAYTRVDKCESDPELAYRVNVLAPENLARAAKEVGA- 98
Query: 125 RLIYTSSPSVVFDGVHGIINGNEALPY----PPKHNDFYSATKAEGEALVIKANGTNGLL 180
RLI+ S+ VFDG + PY P + Y +K GE V+ AN L
Sbjct: 99 RLIHIST-DYVFDG--------KKGPYKEEDAPNPLNVYGKSKLLGEVAVLNAN--PRYL 147
Query: 181 TCCIRPSSIFGP--GDRLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHI-CAE 237
+R S ++G V ++ A K + + + TY A++A A + E
Sbjct: 148 I--LRTSWLYGELKNGENFVEWMLRLAAERKE--VNVVHDQIGSPTYAADLADAILELIE 203
Query: 238 RALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIK 284
R + + Y ++N I +EF LI + LG IK
Sbjct: 204 RNSLTGI----------YHLSNSGPISKYEFAKLIADALGLPDVEIK 240
|
dTDP-6-deoxy-L-lyxo-4-hexulose reductase, an extended SDR, synthesizes dTDP-L-rhamnose from alpha-D-glucose-1-phosphate, providing the precursor of L-rhamnose, an essential cell wall component of many pathogenic bacteria. This subgroup has the characteristic active site tetrad and NADP-binding motif. This subgroup also contains human MAT2B, the regulatory subunit of methionine adenosyltransferase (MAT); MAT catalyzes S-adenosylmethionine synthesis. The human gene encoding MAT2B encodes two major splicing variants which are induced in human cell liver cancer and regulate HuR, an mRNA-binding protein which stabilizes the mRNA of several cyclins, to affect cell proliferation. Both MAT2B variants include this extended SDR domain. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 280 |
| >gnl|CDD|222146 pfam13460, NAD_binding_10, NADH(P)-binding | Back alignment and domain information |
|---|
Score = 63.9 bits (156), Expect = 6e-12
Identities = 39/185 (21%), Positives = 64/185 (34%), Gaps = 35/185 (18%)
Query: 11 VVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFD 70
V G G R LV+ L+ V AL + + + V D
Sbjct: 2 AVIGATGKTGRRLVKELLARG-HQVT--------ALSRNPSK------APAPGVTPVQKD 46
Query: 71 LRHKAQVLQALQGAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTS 130
L A + +AL G + V + +G K+++DA A V+R++ S
Sbjct: 47 LFDLADLAEALAGVDAVVDAFGA----------RPDDSDGVKHLLDAAARAGVRRIVVVS 96
Query: 131 SPSVVFDGVHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANGTNGLLTCCIRPSSIF 190
+ + D + L P Y+ KA E L+ + GL +RP ++F
Sbjct: 97 AAGLYRDEPGTFRLDDAPLFPP------YARAKAAAEELLRAS----GLDWTIVRPGALF 146
Query: 191 GPGDR 195
Sbjct: 147 DEEGE 151
|
Length = 182 |
| >gnl|CDD|187541 cd05230, UGD_SDR_e, UDP-glucuronate decarboxylase (UGD) and related proteins, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 65.7 bits (161), Expect = 8e-12
Identities = 87/369 (23%), Positives = 144/369 (39%), Gaps = 95/369 (25%)
Query: 11 VVTGGRGFAARHLVEMLIRY--------DMFSVRIADLSDSIALEPHEEQGILGEALRSG 62
++TGG GF HL + L+ + F+ R ++ I E +R
Sbjct: 4 LITGGAGFLGSHLCDRLLEDGHEVICVDNFFTGRKRNIEHLIGHPNFE-------FIR-- 54
Query: 63 RAHYVSFDLRHKAQVLQALQGAEVVFHMAAPNSSINNHKLHHSV-----NVEGTKNVIDA 117
H V+ L + + ++H+A P S + H ++ + NV GT N++
Sbjct: 55 --HDVTEPLYLEV---------DQIYHLACPASPV--HYQYNPIKTLKTNVLGTLNMLGL 101
Query: 118 CAELKVKRLIYTSSPSVVFDG-VH-------GIINGNEALPYPPKHNDFYSATKAEGEAL 169
+ R++ S+ V D VH G +N P P+ Y K E L
Sbjct: 102 AKRVGA-RVLLASTSEVYGDPEVHPQPESYWGNVN-----PIGPR--SCYDEGKRVAETL 153
Query: 170 VIKANGTNGLLTCCIRPSSIFGPG----DRLLVPSLVAAARAGKSKFIIGDGNNVYDFTY 225
+ + +G+ R + +GP D +V + + A G+ + GDG F Y
Sbjct: 154 CMAYHRQHGVDVRIARIFNTYGPRMHPNDGRVVSNFIVQALRGEPITVYGDGTQTRSFQY 213
Query: 226 VANVAHAHICAERALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKI 285
V+++ I R + S+ G + N E E L+ + G + +I
Sbjct: 214 VSDLVEGLI---RLMNSDY------FGGPVNLGNPEEFTILELAELVKKLTG---SKSEI 261
Query: 286 PAFVMMPIAHMVELTYRLLGPYGMKVPQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPL 345
V +P+ P+ P R R D SKAK+LLG+ P VPL
Sbjct: 262 ---VFLPL------------------PEDDPKR-------RRPDISKAKELLGWEPKVPL 293
Query: 346 EEGIKRTVD 354
EEG++RT++
Sbjct: 294 EEGLRRTIE 302
|
UGD catalyzes the formation of UDP-xylose from UDP-glucuronate; it is an extended-SDR, and has the characteristic glycine-rich NAD-binding pattern, TGXXGXXG, and active site tetrad. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 305 |
| >gnl|CDD|224013 COG1088, RfbB, dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 65.7 bits (161), Expect = 1e-11
Identities = 92/361 (25%), Positives = 136/361 (37%), Gaps = 65/361 (18%)
Query: 12 VTGGRGFAARHLV-EMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFD 70
VTGG GF + V +L ++ V D L L + S R +V D
Sbjct: 5 VTGGAGFIGSNFVRYILNKHPDDHVVNLD-----KLTYAGNLENLADVEDSPRYRFVQGD 59
Query: 71 LRHKAQVLQALQGAEV--VFHMAAPNS---SINNHKLHHSVNVEGTKNVIDA-CAELKVK 124
+ + V + + + V H AA + SI+ NV GT +++A
Sbjct: 60 ICDRELVDRLFKEYQPDAVVHFAAESHVDRSIDGPAPFIQTNVVGTYTLLEAARKYWGKF 119
Query: 125 RLIYTSSPSVVFDGVHGIINGNEAL-----PYPPKHNDFYSATKAEGEALVIKANGTNGL 179
R + S+ D V+G + ++ PY P + YSA+KA + LV T GL
Sbjct: 120 RFHHIST-----DEVYGDLGLDDDAFTETTPYNP--SSPYSASKAASDLLVRAYVRTYGL 172
Query: 180 LTCCIRPSSIFGPGD--RLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICAE 237
R S+ +GP L+P ++ A GK + GDG + D+ YV + H
Sbjct: 173 PATITRCSNNYGPYQFPEKLIPLMIINALLGKPLPVYGDGLQIRDWLYVED--HC----- 225
Query: 238 RALASEVTVAEKA-AGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIP-AFVMMPIAH 295
RA+ V K G+ Y + E V I E LG +P + FV H
Sbjct: 226 RAID---LVLTKGKIGETYNIGGGNERTNLEVVKTICELLGKDKPDYRDLITFVEDRPGH 282
Query: 296 MVELTYRLLGPYGMKVPQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDS 355
Y + D SK K LG+ P E G+++TVD
Sbjct: 283 DRR--------YAI-------------------DASKIKRELGWRPQETFETGLRKTVDW 315
Query: 356 Y 356
Y
Sbjct: 316 Y 316
|
Length = 340 |
| >gnl|CDD|187572 cd05262, SDR_a7, atypical (a) SDRs, subgroup 7 | Back alignment and domain information |
|---|
Score = 61.6 bits (150), Expect = 1e-10
Identities = 73/309 (23%), Positives = 107/309 (34%), Gaps = 49/309 (15%)
Query: 12 VTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDL 71
VTG GF +V L+ + L+ S + G L + A DL
Sbjct: 5 VTGATGFIGSAVVRELVA---AGHEVVGLARS-------DAG--AAKLEAAGAQVHRGDL 52
Query: 72 RHKAQVLQALQGAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKV---KRLIY 128
+ +A A+ V H+A + + + E + I+A E K LIY
Sbjct: 53 EDLDILRKAAAEADAVIHLAFTHDF-----DNFAQACEVDRRAIEALGEALRGTGKPLIY 107
Query: 129 TSSPSVVFDGVHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANGTNGLLTCCIRPSS 188
TS ++ + EA PP A +A EA ++ + P
Sbjct: 108 TSGIWLLGPTGGQEED-EEAPDDPPT-----PAARAVSEAAALELAERGVRASVVRLPPV 161
Query: 189 IFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICAERALASEVTVAE 248
+ G GD VP L+A AR +GDG N + + + A + LA E +
Sbjct: 162 VHGRGDHGFVPMLIAIAREKGVSAYVGDGKNRWPAVHRDDAARLY-----RLALE----K 212
Query: 249 KAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPA------------FVMMPIAHM 296
AG Y E I + I LG P + IPA FV +
Sbjct: 213 GKAGSVYHAVAEEGIPVKDIAEAIGRRLGV--PVVSIPAEEAAAHFGWLAMFVALDQPVS 270
Query: 297 VELTYRLLG 305
+ T R LG
Sbjct: 271 SQKTRRRLG 279
|
This subgroup contains atypical SDRs of unknown function. Members of this subgroup have a glycine-rich NAD(P)-binding motif consensus that matches the extended SDRs, TGXXGXXG, but lacks the characteristic active site residues of the SDRs. This subgroup has basic residues (HXXXR) in place of the active site motif YXXXK, these may have a catalytic role. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 291 |
| >gnl|CDD|215146 PLN02260, PLN02260, probable rhamnose biosynthetic enzyme | Back alignment and domain information |
|---|
Score = 62.1 bits (151), Expect = 3e-10
Identities = 70/235 (29%), Positives = 106/235 (45%), Gaps = 25/235 (10%)
Query: 12 VTGGRGFAARHLVEMLIR-YDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFD 70
+TG GF A H+ LIR Y + + + D D + L + S +V D
Sbjct: 11 ITGAAGFIASHVANRLIRNYPDYKIVVLDKLDYCS-----NLKNLNPSKSSPNFKFVKGD 65
Query: 71 LRHKAQV--LQALQGAEVVFHMAAP----NSSINNHKLHHSVNVEGTKNVIDACAEL-KV 123
+ V L +G + + H AA NS N+ + + N+ GT +++AC ++
Sbjct: 66 IASADLVNYLLITEGIDTIMHFAAQTHVDNSFGNSFEFTKN-NIYGTHVLLEACKVTGQI 124
Query: 124 KRLIYTSSPSVVFDGVHGIINGN-EA---LPYPPKHNDFYSATKAEGEALVIKANGTNGL 179
+R I+ S+ V + GN EA LP P YSATKA E LV+ + GL
Sbjct: 125 RRFIHVSTDEVYGETDEDADVGNHEASQLLPTNP-----YSATKAGAEMLVMAYGRSYGL 179
Query: 180 LTCCIRPSSIFGPGD--RLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHA 232
R ++++GP L+P + A GK I GDG+NV + Y +VA A
Sbjct: 180 PVITTRGNNVYGPNQFPEKLIPKFILLAMQGKPLPIHGDGSNVRSYLYCEDVAEA 234
|
Length = 668 |
| >gnl|CDD|187536 cd05193, AR_like_SDR_e, aldehyde reductase, flavonoid reductase, and related proteins, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 58.8 bits (142), Expect = 1e-09
Identities = 68/254 (26%), Positives = 95/254 (37%), Gaps = 32/254 (12%)
Query: 12 VTGGRGFAARHLVEMLIRYDMFSVR-IADLSDSIALEPHEEQGILGEALRSGRAHYVSFD 70
VTG GF A H+VE L+ + VR + H L GR D
Sbjct: 3 VTGASGFVASHVVEQLLERG-YKVRATVRDPSKVKKVNH--LLDLDAK--PGRLELAVAD 57
Query: 71 LRHKAQVLQALQGAEVVFHMAAPN--SSINNHKLHHSVNVEGTKNVIDACAELK-VKRLI 127
L + + ++G VFH+A P SS + +++ + GT N + A A K VKR +
Sbjct: 58 LTDEQSFDEVIKGCAGVFHVATPVSFSSKDPNEVIKP-AIGGTLNALKAAAAAKSVKRFV 116
Query: 128 YTSSPSVVF---DGVHGII------NGNEALPYPPKHNDFYSATKAEGEALVIKANGTNG 178
TSS V V GI+ N E P K Y+A+K E K N
Sbjct: 117 LTSSAGSVLIPKPNVEGIVLDEKSWNLEEFDSDPKKSAWVYAASKTLAEKAAWKFADENN 176
Query: 179 LLTCCIRPSSIFGPGDRLLVPSLVAAARA---GKSKFI-----IGDGNNVYDFTYVANVA 230
+ + P+ G PS A + G I G V +V ++
Sbjct: 177 IDLITVIPTLTIGTIFDSETPSSSGWAMSLITGNEGVSPALALIPPGYYV----HVVDIC 232
Query: 231 HAHI-CAERALASE 243
AHI C E +A
Sbjct: 233 LAHIGCLELPIARG 246
|
This subgroup contains aldehyde reductase and flavonoid reductase of the extended SDR-type and related proteins. Proteins in this subgroup have a complete SDR-type active site tetrad and a close match to the canonical extended SDR NADP-binding motif. Aldehyde reductase I (aka carbonyl reductase) is an NADP-binding SDR; it catalyzes the NADP-dependent reduction of ethyl 4-chloro-3-oxobutanoate to ethyl (R)-4-chloro-3-hydroxybutanoate. The related flavonoid reductases act in the NADP-dependent reduction of flavonoids, ketone-containing plant secondary metabolites. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 295 |
| >gnl|CDD|187540 cd05229, SDR_a3, atypical (a) SDRs, subgroup 3 | Back alignment and domain information |
|---|
Score = 58.5 bits (142), Expect = 2e-09
Identities = 79/354 (22%), Positives = 136/354 (38%), Gaps = 67/354 (18%)
Query: 12 VTGGRGFAARHLVEMLIRYDMFSVRIADLS-DSIALEPHEEQGILGEALRSGRAHYVSFD 70
V G G R + L R + VR+ S +A P E V+ D
Sbjct: 4 VLGASGPIGREVARELRR-RGWDVRLVSRSGSKLAWLPGVE--------------IVAAD 48
Query: 71 LRHKAQVLQALQGAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTS 130
+ V+ A +GA+V++H A P + +NV+ A +L+
Sbjct: 49 AMDASSVIAAARGADVIYHCANPAY-----TRWEELFPPLMENVVAAAEAN-GAKLVLPG 102
Query: 131 SPSVVFDGVHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANGTNGLLTCCIRPSSIF 190
+V G E P+ P +AE E ++ A+ + +R +
Sbjct: 103 --NVYMYGPQAGSPITEDTPFQP--TTRKGRIRAEMEERLLAAHAKGDIRALIVRAPDFY 158
Query: 191 GPG--DRLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICAERALASEVTVAE 248
GPG + L +L A GK+ G+ + +++TY+ +VA RAL VT+AE
Sbjct: 159 GPGAINSWLGAALFAIL-QGKTAVFPGNLDTPHEWTYLPDVA-------RAL---VTLAE 207
Query: 249 K--AAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVM------MPIAH-MVEL 299
+ A G+A+ + +I E +++ G IP + + P+ +VE+
Sbjct: 208 EPDAFGEAWHLPGAGAITTRELIAIAARAAGRPPKVRVIPKWTLRLAGLFDPLMREIVEM 267
Query: 300 TYRLLGPYGMKVPQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTV 353
Y P+ + D SK + G +P PL+E I++T+
Sbjct: 268 MYLWEEPFIL-------------------DSSKLEATFGEIPHTPLDEAIRQTL 302
|
These atypical SDR family members of unknown function have a glycine-rich NAD(P)-binding motif consensus that is very similar to the extended SDRs, GXXGXXG. Generally, this group has poor conservation of the active site tetrad, However, individual sequences do contain matches to the YXXXK active site motif, and generally Tyr or Asn in place of the upstream Ser found in most SDRs. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 302 |
| >gnl|CDD|178567 PLN02986, PLN02986, cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Score = 58.5 bits (141), Expect = 2e-09
Identities = 71/254 (27%), Positives = 110/254 (43%), Gaps = 45/254 (17%)
Query: 8 RLCVVTGGRGFAARHLVEMLI-RYDMFSVRIADLSDS------IALEPHEEQGILGEALR 60
+L VTG G+ A +V++L+ R + DL+D +AL+ +E+ L +A
Sbjct: 6 KLVCVTGASGYIASWIVKLLLLRGYTVKATVRDLTDRKKTEHLLALDGAKERLKLFKA-- 63
Query: 61 SGRAHYVSFDLRHKAQVLQALQGAEVVFHMAAPNSSINNHKLHHSVN--VEGTKNVIDAC 118
DL ++ QA++G + VFH A+P ++ ++GT NV++ C
Sbjct: 64 ---------DLLEESSFEQAIEGCDAVFHTASPVFFTVKDPQTELIDPALKGTINVLNTC 114
Query: 119 AEL-KVKRLIYTSSPSVVF---------DGVHGIINGNEALPYPPKHNDFYSATKAEGEA 168
E VKR+I TSS + V D V + +L K ++Y +K E
Sbjct: 115 KETPSVKRVILTSSTAAVLFRQPPIEANDVVDETFFSDPSLCRETK--NWYPLSKILAEN 172
Query: 169 LVIKANGTNGLLTCCIRPSSIFGPGDRLLVPSLVAAARA------GKSKFIIGDGNNVYD 222
+ NG+ + P I GP LL P+L + GK+ F N Y
Sbjct: 173 AAWEFAKDNGIDMVVLNPGFICGP---LLQPTLNFSVELIVDFINGKNLF----NNRFYR 225
Query: 223 FTYVANVAHAHICA 236
F V +VA AHI A
Sbjct: 226 FVDVRDVALAHIKA 239
|
Length = 322 |
| >gnl|CDD|187575 cd05265, SDR_a1, atypical (a) SDRs, subgroup 1 | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 2e-09
Identities = 40/170 (23%), Positives = 66/170 (38%), Gaps = 18/170 (10%)
Query: 113 NVIDACAELKVKRLIYTSSPSVVFDGVHGIIN----GNEALPYPPKHNDFYSATKAEGEA 168
+DA +VK+ I+ SS SV I D Y K E
Sbjct: 81 RALDAFKG-RVKQYIFISSASVYLKPGRVITESTPLREPDAVGLSDPWD-YGRGKRAAED 138
Query: 169 LVIKANGTNGLLTCCIRPSSIFGPGDRL-LVPSLVAAARAGKSKFIIGDGNNVYDFTYVA 227
++I+A + +RP I+GPGD + G+ + GDG+++ F +V
Sbjct: 139 VLIEAAAFPYTI---VRPPYIYGPGDYTGRLAYFFDRLARGRPILVPGDGHSLVQFIHVK 195
Query: 228 NVAHAHICAERALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLG 277
++A A A KA G + +T E++ + E + + LG
Sbjct: 196 DLARA---LLGAAG-----NPKAIGGIFNITGDEAVTWDELLEACAKALG 237
|
Atypical SDRs in this subgroup are poorly defined and have been identified putatively as isoflavones reductase, sugar dehydratase, mRNA binding protein etc. Atypical SDRs are distinct from classical SDRs. Members of this subgroup retain the canonical active site triad (though not the upstream Asn found in most SDRs) but have an unusual putative glycine-rich NAD(P)-binding motif, GGXXXXG, in the usual location. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 250 |
| >gnl|CDD|178268 PLN02662, PLN02662, cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Score = 58.2 bits (141), Expect = 3e-09
Identities = 76/269 (28%), Positives = 119/269 (44%), Gaps = 65/269 (24%)
Query: 2 SGEENERLCVVTGGRGFAARHLVEMLIRYDMFSVR--IADLSDS------IALEPHEEQG 53
SGE ++ VTG G+ A LV++L++ ++V+ + D +D +AL+ +E+
Sbjct: 1 SGEG--KVVCVTGASGYIASWLVKLLLQRG-YTVKATVRDPNDPKKTEHLLALDGAKERL 57
Query: 54 ILGEA--LRSGRAHYVSFDLRHKAQVLQALQGAEVVFHMAAPNSSINNHKLHHSVN---- 107
L +A L G SFD + G E VFH A+P +H V
Sbjct: 58 HLFKANLLEEG-----SFD--------SVVDGCEGVFHTASP--------FYHDVTDPQA 96
Query: 108 ------VEGTKNVIDACAELK-VKRLIYTSS-PSVVFDG---VHGIINGNEALPYPP--- 153
V+GT NV+ +CA++ VKR++ TSS +V ++G ++ P
Sbjct: 97 ELIDPAVKGTLNVLRSCAKVPSVKRVVVTSSMAAVAYNGKPLTPDVVVDETWFSDPAFCE 156
Query: 154 KHNDFYSATKAEGEALVIKANGTNGLLTCCIRPSSIFGPGDRLLVPSLVAAARA------ 207
+ +Y +K E K NG+ I P+ + GP LL P+L +A A
Sbjct: 157 ESKLWYVLSKTLAEEAAWKFAKENGIDMVTINPAMVIGP---LLQPTLNTSAEAILNLIN 213
Query: 208 GKSKFIIGDGNNVYDFTYVANVAHAHICA 236
G F N Y + V +VA+AHI A
Sbjct: 214 GAQTF----PNASYRWVDVRDVANAHIQA 238
|
Length = 322 |
| >gnl|CDD|213592 TIGR01179, galE, UDP-glucose-4-epimerase GalE | Back alignment and domain information |
|---|
Score = 57.0 bits (138), Expect = 6e-09
Identities = 73/288 (25%), Positives = 114/288 (39%), Gaps = 45/288 (15%)
Query: 12 VTGGRGFAARHLVEMLIRYDMFSVRIADLSDS--IALEPHEEQGILGEALRSGRAHYVSF 69
VTGG G+ H V L+ V + +LS+ AL E + +V
Sbjct: 4 VTGGAGYIGSHTVRQLLESGHEVVILDNLSNGSREALPRGERITPVT---------FVEG 54
Query: 70 DLRHKAQVLQAL--QGAEVVFHMAA----PNSSINNHKLHHSVNVEGTKNVIDACAELKV 123
DLR + + + + V H A S K + + NV GT N+++A + V
Sbjct: 55 DLRDRELLDRLFEEHKIDAVIHFAGLIAVGESVQKPLKYYRN-NVVGTLNLLEAMQQAGV 113
Query: 124 KRLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANGTNGLLTCC 183
K+ I++SS +V G I +E P P + Y +K E ++ + +
Sbjct: 114 KKFIFSSSAAVY--GEPSSIPISEDSPLGPINP--YGRSKLMSEQILRDLQKADPDWSYV 169
Query: 184 I---------RPSSIFG---PGDRLLVPSLVAAARAGKSKF-IIG------DGNNVYDFT 224
I PS G PG L+P A + K I G DG V D+
Sbjct: 170 ILRYFNVAGAHPSGDIGEDPPGITHLIPYACQVAVGKRDKLTIFGTDYPTPDGTCVRDYI 229
Query: 225 YVANVAHAHICAERALAS--EVTVAEKAAGQAYFVTNMESIKFWEFVS 270
+V ++A AH+ A L + V GQ + V +E I+ ++ VS
Sbjct: 230 HVMDLADAHLAALEYLLNGGGSHVYNLGYGQGFSV--LEVIEAFKKVS 275
|
Alternate name: UDPgalactose 4-epimerase This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from This model and described by a separate model [Energy metabolism, Sugars]. Length = 328 |
| >gnl|CDD|187550 cd05239, GDP_FS_SDR_e, GDP-fucose synthetase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 56.8 bits (138), Expect = 7e-09
Identities = 78/369 (21%), Positives = 123/369 (33%), Gaps = 97/369 (26%)
Query: 12 VTGGRGFAARHLVEMLIRYDMFSVRIADLSDS--IALEPHEEQGILGEALRSGRAHYVSF 69
VTG RG +V +L A + E
Sbjct: 4 VTGHRGLVGSAIVRVL----------ARRGYENVVFRTSKE------------------L 35
Query: 70 DLRHKAQVLQAL--QGAEVVFHMAA------PNSSINNHKLHHSVNVEGTKNVIDACAEL 121
DL + V + + V H+AA N + L N+ NVI A
Sbjct: 36 DLTDQEAVRAFFEKEKPDYVIHLAAKVGGIVANMTYPADFLR--DNLLINDNVIHAAHRF 93
Query: 122 KVKRLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDF-YSATKAEGEALVIKANGTNGLL 180
VK+L++ S + D I+ ++ L PP+ + Y+ K G L G
Sbjct: 94 GVKKLVFLGSSCIYPDLAPQPIDESDLLTGPPEPTNEGYAIAKRAGLKLCEAYRKQYGCD 153
Query: 181 TCCIRPSSIFGPGDRL------LVPSLV-----AAARAGKSKFIIGDGNNVYDFTYVANV 229
+ P++++GP D ++P+L+ A R GK + G G +F Y ++
Sbjct: 154 YISVMPTNLYGPHDNFDPENSHVIPALIRKFHEAKLRGGKEVTVWGSGTPRREFLYSDDL 213
Query: 230 AHA--HICAERALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPA 287
A A + V V G SI+ E I E +G++
Sbjct: 214 ARAIVFLLENYDEPIIVNVGS---GVEI------SIR--ELAEAIAEVVGFKG------- 255
Query: 288 FVMMPIAHMVELTYRLLGPYGMKVPQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEE 347
E+ + P G + D SK + LG+ P PLE+
Sbjct: 256 ----------EIVFDTSKPDGQP--------------RKLLDVSKLRA-LGWFPFTPLEQ 290
Query: 348 GIKRTVDSY 356
GI+ T + Y
Sbjct: 291 GIRETYEWY 299
|
GDP-fucose synthetase (aka 3, 5-epimerase-4-reductase) acts in the NADP-dependent synthesis of GDP-fucose from GDP-mannose. Two activities have been proposed for the same active site: epimerization and reduction. Proteins in this subgroup are extended SDRs, which have a characteristic active site tetrad and an NADP-binding motif, [AT]GXXGXXG, that is a close match to the archetypical form. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 300 |
| >gnl|CDD|187546 cd05235, SDR_e1, extended (e) SDRs, subgroup 1 | Back alignment and domain information |
|---|
Score = 55.3 bits (134), Expect = 2e-08
Identities = 31/113 (27%), Positives = 46/113 (40%), Gaps = 12/113 (10%)
Query: 86 VVFHMAAPNSSINNHKLHHS----VNVEGTKNVIDACAELKVKRLIYTSSPSVVFDGVHG 141
V+ H A N + NV GTK ++ A K+K L + S+ SV +
Sbjct: 92 VIIHNGA----NVNWVYPYEELKPANVLGTKELLKLAATGKLKPLHFVSTLSVFSAEEYN 147
Query: 142 IINGNEALPYPPKHNDF---YSATKAEGEALVIKANGTNGLLTCCIRPSSIFG 191
++ E+ N Y +K E L+ +A GL IRP +IFG
Sbjct: 148 ALDDEESDDMLESQNGLPNGYIQSKWVAEKLLREA-ANRGLPVAIIRPGNIFG 199
|
This family consists of an SDR module of multidomain proteins identified as putative polyketide sythases fatty acid synthases (FAS), and nonribosomal peptide synthases, among others. However, unlike the usual ketoreductase modules of FAS and polyketide synthase, these domains are related to the extended SDRs, and have canonical NAD(P)-binding motifs and an active site tetrad. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 290 |
| >gnl|CDD|187568 cd05258, CDP_TE_SDR_e, CDP-tyvelose 2-epimerase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 55.4 bits (134), Expect = 3e-08
Identities = 57/279 (20%), Positives = 103/279 (36%), Gaps = 51/279 (18%)
Query: 11 VVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEA--LRSGRAH--- 65
++TGG GF +L ++ + +L +G G L++ R
Sbjct: 4 LITGGAGFIGSNLARFFLKQGWEVIGFDNLM---------RRGSFGNLAWLKANREDGGV 54
Query: 66 -YVSFDLRHKAQVLQALQGAEVVFHMAAPNS---SINNHKLHHSVNVEGTKNVIDACAEL 121
+V D+R++ + + +++ H AA S S ++ +L N GT NV++A +
Sbjct: 55 RFVHGDIRNRNDLEDLFEDIDLIIHTAAQPSVTTSASSPRLDFETNALGTLNVLEAARQH 114
Query: 122 KVK-RLIYTSSPSV-----------------VFDGVHGIING-NEALPYPPKHNDFYSAT 162
I+TS+ V G +E+ P H+ Y A+
Sbjct: 115 APNAPFIFTSTNKVYGDLPNYLPLEELETRYELAPEGWSPAGISESFPLDFSHS-LYGAS 173
Query: 163 KAEGEALVIKANGTNGLLTCCIRPSSIFGPG-----DRLLVPSLVAAARAGKSKFIIG-D 216
K + V + GL T R + GP D+ V + A GK I G
Sbjct: 174 KGAADQYVQEYGRIFGLKTVVFRCGCLTGPRQFGTEDQGWVAYFLKCAVTGKPLTIFGYG 233
Query: 217 GNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAY 255
G V D + A++ + + R + ++ G+ +
Sbjct: 234 GKQVRDVLHSADLVNLY---LRQFQNP----DRRKGEVF 265
|
CDP-tyvelose 2-epimerase is a tetrameric SDR that catalyzes the conversion of CDP-D-paratose to CDP-D-tyvelose, the last step in tyvelose biosynthesis. This subgroup is a member of the extended SDR subfamily, with a characteristic active site tetrad and NAD-binding motif. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 337 |
| >gnl|CDD|182313 PRK10217, PRK10217, dTDP-glucose 4,6-dehydratase; Provisional | Back alignment and domain information |
|---|
Score = 55.4 bits (133), Expect = 3e-08
Identities = 92/372 (24%), Positives = 145/372 (38%), Gaps = 65/372 (17%)
Query: 8 RLCVVTGGRGFAARHLVEMLIRYDMFSVRIAD----LSDSIALEPHEEQGILGEALRSGR 63
R ++TGG GF LV +I +V + D + ++L P +S R
Sbjct: 2 RKILITGGAGFIGSALVRYIINETSDAVVVVDKLTYAGNLMSLAP---------VAQSER 52
Query: 64 AHYVSFDLRHKAQVLQALQ--GAEVVFHMAAP---NSSINNHKLHHSVNVEGTKNVIDAC 118
+ D+ +A++ + + V H+AA + SI+ N+ GT +++A
Sbjct: 53 FAFEKVDICDRAELARVFTEHQPDCVMHLAAESHVDRSIDGPAAFIETNIVGTYTLLEAA 112
Query: 119 --------AELKVKRLIYTSSPSVVFDGVHGIING-NEALPYPPKHNDFYSATKAEGEAL 169
+ K + S V+ +H + E PY P YSA+KA + L
Sbjct: 113 RAYWNALTEDKKSAFRFHHISTDEVYGDLHSTDDFFTETTPYAPSSP--YSASKASSDHL 170
Query: 170 VIKANGTNGLLTCCIRPSSIFGPGD--RLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVA 227
V T GL T S+ +GP L+P ++ A AGK + G+G + D+ YV
Sbjct: 171 VRAWLRTYGLPTLITNCSNNYGPYHFPEKLIPLMILNALAGKPLPVYGNGQQIRDWLYVE 230
Query: 228 NVAHAHICAERALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLI---LEGLGYQRPRIK 284
+ HA RAL T + G+ Y + K + V I LE L +P+
Sbjct: 231 D--HA-----RALYCVATTGK--VGETYNIGGHNERKNLDVVETICELLEELAPNKPQ-- 279
Query: 285 IPAFVMMPIAHMVELTYRLLGPYGMKVPQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVP 344
+AH YR L + P D SK LG++P
Sbjct: 280 -------GVAH-----YRDLITFVADRPG--------HDLRYAIDASKIARELGWLPQET 319
Query: 345 LEEGIKRTVDSY 356
E G+++TV Y
Sbjct: 320 FESGMRKTVQWY 331
|
Length = 355 |
| >gnl|CDD|233557 TIGR01746, Thioester-redct, thioester reductase domain | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 3e-08
Identities = 72/297 (24%), Positives = 108/297 (36%), Gaps = 48/297 (16%)
Query: 11 VVTGGRGFAARHLVEMLIRYDMFS-----VRIADLSDSIALEPHEE----QGILGEALRS 61
++TG GF +L+E L+R + VR A S+ A+E E + E L
Sbjct: 3 LLTGATGFLGAYLLEELLRRSTQAKVICLVRAA--SEEHAMERLREALRSYRLWHEDLAR 60
Query: 62 GRAHYVSFDLRHKAQVLQALQ------GAEVVFHMAAPNSSINNHKLHHS----VNVEGT 111
R V+ DL L + + + H A + N +S NV GT
Sbjct: 61 ERIEVVAGDLSEPRLGLSDAEWERLAENVDTIVHNGA----LVNWVYPYSELRGANVLGT 116
Query: 112 KNVIDACAELKVKRLIYTSSPSVVFDG-VHGIINGNEALPYPPKHNDFYSATKAEGEALV 170
+ V+ A + K L Y S+ SV + + + + PP Y+ +K E LV
Sbjct: 117 REVLRLAASGRAKPLHYVSTISVGAAIDLSTVTEDDATVTPPPGLAGGYAQSKWVAELLV 176
Query: 171 IKANGTNGLLTCCIRPSSIFGP-------GDRLLVPSLVAAARAGKSKFIIGDGNNVYD- 222
+A GL +RP I G +L + G + +
Sbjct: 177 REA-SDRGLPVTIVRPGRILGNSYTGAINSSDILWRMVKGCLALG----AYPQSPELTED 231
Query: 223 FTYVANVAHAHICAERALASEVTVAEKAAGQAYF-VTNMESIKFWEFVSLILEGLGY 278
T V VA RA+ + +AG F V N E + EF+ LE GY
Sbjct: 232 LTPVDFVA-------RAIVVLSSRPAASAGGPVFHVVNPEPVSLDEFLD-WLERAGY 280
|
This model includes the terminal domain from the fungal alpha aminoadipate reductase enzyme (also known as aminoadipate semialdehyde dehydrogenase) which is involved in the biosynthesis of lysine , as well as the reductase-containing component of the myxochelin biosynthetic gene cluster, MxcG. The mechanism of reduction involves activation of the substrate by adenylation and transfer to a covalently-linked pantetheine cofactor as a thioester. This thioester is then reduced to give an aldehyde (thus releasing the product) and a regenerated pantetheine thiol. (In myxochelin biosynthesis this aldehyde is further reduced to an alcohol or converted to an amine by an aminotransferase.) This is a fundamentally different reaction than beta-ketoreductase domains of polyketide synthases which act at a carbonyl two carbons removed from the thioester and forms an alcohol as a product. This domain is invariably found at the C-terminus of the proteins which contain it (presumably because it results in the release of the product). The majority of hits to this model are non-ribosomal peptide synthetases in which this domain is similarly located proximal to a thiolation domain (pfam00550). In some cases this domain is found at the end of a polyketide synthetase enzyme, but is unlike ketoreductase domains which are found before the thiolase domains. Exceptions to this observed relationship with the thiolase domain include three proteins which consist of stand-alone reductase domains (GP|466833 from M. leprae, GP|435954 from Anabaena and OMNI|NTL02SC1199 from Strep. coelicolor) and one protein (OMNI|NTL01NS2636 from Nostoc) which contains N-terminal homology with a small group of hypothetical proteins but no evidence of a thiolation domain next to the putative reductase domain. Below the noise cutoff to this model are proteins containing more distantly related ketoreductase and dehydratase/epimerase domains. It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold. Length = 367 |
| >gnl|CDD|187558 cd05247, UDP_G4E_1_SDR_e, UDP-glucose 4 epimerase, subgroup 1, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 54.5 bits (132), Expect = 4e-08
Identities = 66/264 (25%), Positives = 105/264 (39%), Gaps = 59/264 (22%)
Query: 12 VTGGRGFAARHLVEMLIRYDMFSVRIAD-LSDSIALEPHEEQGILGEALRSGRAHYVSF- 69
VTGG G+ H V L+ + V + D LS+ EAL + F
Sbjct: 4 VTGGAGYIGSHTVVELLE-AGYDVVVLDNLSNGHR-----------EALPRIEKIRIEFY 51
Query: 70 --DLRHKAQVLQALQ--GAEVVFHMAAPNS---SINNHKLHHSVNVEGTKNVIDACAELK 122
D+R +A + + + V H AA + S+ ++ NV GT N+++A
Sbjct: 52 EGDIRDRAALDKVFAEHKIDAVIHFAALKAVGESVQKPLKYYDNNVVGTLNLLEAMRAHG 111
Query: 123 VKRLIYTSSPSVVFDGVHGIINGNEALPYPPKH-----NDFYSATKAEGEAL---VIKAN 174
VK +++SS +V + E +P + N Y TK E + + KA
Sbjct: 112 VKNFVFSSSAAVYGE--------PETVPITEEAPLNPTNP-YGRTKLMVEQILRDLAKAP 162
Query: 175 GTNGLLTCCIR--------PSSIFG---PGDRLLVPSLVAAARAGKSKFII-G------D 216
G N + +R PS + G L+P ++ A + K I G D
Sbjct: 163 GLNYV---ILRYFNPAGAHPSGLIGEDPQIPNNLIPYVLQVALGRREKLAIFGDDYPTPD 219
Query: 217 GNNVYDFTYVANVAHAHICAERAL 240
G V D+ +V ++A AH+ A L
Sbjct: 220 GTCVRDYIHVVDLADAHVLALEKL 243
|
UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 323 |
| >gnl|CDD|187562 cd05252, CDP_GD_SDR_e, CDP-D-glucose 4,6-dehydratase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 2e-07
Identities = 86/338 (25%), Positives = 129/338 (38%), Gaps = 79/338 (23%)
Query: 49 HEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ--GAEVVFHMAAP---NSSINNHKLH 103
E L + S R D+R + +A++ E+VFH+AA S +
Sbjct: 44 LFELANLDNKISSTRG-----DIRDLNALREAIREYEPEIVFHLAAQPLVRLSYKDPVET 98
Query: 104 HSVNVEGTKNVIDACAELK-VKRLIYTSSPSVVFDGVHGIINGNEALPY----PPKHNDF 158
NV GT N+++A E VK ++ +S D + N Y P +D
Sbjct: 99 FETNVMGTVNLLEAIRETGSVKAVVNVTS-----DKCYE--NKEWGWGYRENDPLGGHDP 151
Query: 159 YSATKAEGEALVIKANGTNGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGN 218
YS++K E L+I + R +S F P + +A+ARAG +IG G
Sbjct: 152 YSSSKGCAE-LIISS----------YR-NSFFNPENYGKHGIAIASARAGN---VIGGG- 195
Query: 219 NVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGL-G 277
D+ AE + + + AG+ + N +I+ W+ V LE L G
Sbjct: 196 ---DW------------AEDRIVPDC-IRAFEAGERVIIRNPNAIRPWQHV---LEPLSG 236
Query: 278 Y--------QRPRIKIPAFVMMPIAHMV----ELTYRLLGPYGMK-VPQLT----PSRVR 320
Y +R A+ P EL + +G L P
Sbjct: 237 YLLLAEKLYERGEEYAEAWNFGPDDEDAVTVLELVEAMARYWGEDARWDLDGNSHPHEAN 296
Query: 321 LLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSYSH 358
LL DCSKAK +LG+ P LEE ++ TV Y
Sbjct: 297 LLK----LDCSKAKTMLGWRPRWNLEETLEFTVAWYKE 330
|
This subgroup contains CDP-D-glucose 4,6-dehydratase, an extended SDR, which catalyzes the conversion of CDP-D-glucose to CDP-4-keto-6-deoxy-D-glucose. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 336 |
| >gnl|CDD|225857 COG3320, COG3320, Putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 5e-07
Identities = 56/210 (26%), Positives = 73/210 (34%), Gaps = 41/210 (19%)
Query: 11 VVTGGRGFAARHLVEMLIRYDMFS----VRIADLSDSIALEPHEEQGILGEALRSGRAHY 66
++TG GF +L+ L+ VR A SD AL E+ L A
Sbjct: 4 LLTGATGFLGAYLLLELLDRSDAKVICLVR-AQ-SDEAALARLEKTFDLYRHWDELSADR 61
Query: 67 VSFDLRHKAQVL--------QALQG-AEVVFHMAAPNSSINNHKLHHS----VNVEGTKN 113
V A+ Q L +++ H AA + NH +S NV GT
Sbjct: 62 VEVVAGDLAEPDLGLSERTWQELAENVDLIIHNAA----LVNHVFPYSELRGANVLGTAE 117
Query: 114 VIDACAELKVKRLIYTSSPSVV-----------FDGVHGIINGNEALPYPPKHNDFYSAT 162
V+ A K K L Y SS SV FD + N + L Y +
Sbjct: 118 VLRLAATGKPKPLHYVSSISVGETEYYSNFTVDFDEISPTRNVGQGLAGG------YGRS 171
Query: 163 KAEGEALVIKANGTNGLLTCCIRPSSIFGP 192
K E LV +A GL RP I G
Sbjct: 172 KWVAEKLVREAGD-RGLPVTIFRPGYITGD 200
|
Length = 382 |
| >gnl|CDD|224016 COG1091, RfbD, dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 8e-07
Identities = 73/352 (20%), Positives = 122/352 (34%), Gaps = 81/352 (23%)
Query: 12 VTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDL 71
+TG G L L + IA + E D+
Sbjct: 5 ITGANGQLGTELRRAL----------PGEFEVIATDRAE------------------LDI 36
Query: 72 RHKAQVLQALQGA--EVVFHMAA---PNSSINNHKLHHSVNVEGTKNVIDACAELKVKRL 126
VL+ ++ +VV + AA + + + +L +VN G +N+ A AE+ RL
Sbjct: 37 TDPDAVLEVIRETRPDVVINAAAYTAVDKAESEPELAFAVNATGAENLARAAAEVGA-RL 95
Query: 127 IYTSSPSVVFDGVHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANGTNGLLTCCIRP 186
++ S+ VFDG G P P + Y +K GE V A G L+ +R
Sbjct: 96 VHISTDY-VFDGEKGGPYKETDTPNP---LNVYGRSKLAGEEAVRAA-GPRHLI---LRT 147
Query: 187 SSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDF-TYVANVAHAHICAERALASEVT 245
S ++G V +++ A+ GK ++ ++ Y TY ++A A I
Sbjct: 148 SWVYGEYGNNFVKTMLRLAKEGKELKVV---DDQYGSPTYTEDLADA-ILE--------L 195
Query: 246 VAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELTYRLLG 305
+ ++ G Y + N ++EF I E G I+ A
Sbjct: 196 LEKEKEGGVYHLVNSGECSWYEFAKAIFEEAGVDGEVIEPIA----------------SA 239
Query: 306 PYGMKVPQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSYS 357
Y + P+ L D K + G E +K +D +
Sbjct: 240 EYPTPAKR--PANSSL-------DTKKLEKAFGLSLP-EWREALKALLDELA 281
|
Length = 281 |
| >gnl|CDD|235630 PRK05865, PRK05865, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 51.2 bits (122), Expect = 8e-07
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 6/72 (8%)
Query: 61 SGRAHYVSFDLRHKAQVLQALQGAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAE 120
A +++ D+R V A+ GA+VV H A + +N++GT NV+ A AE
Sbjct: 39 PSSADFIAADIRDATAVESAMTGADVVAHCAWV------RGRNDHINIDGTANVLKAMAE 92
Query: 121 LKVKRLIYTSSP 132
R+++TSS
Sbjct: 93 TGTGRIVFTSSG 104
|
Length = 854 |
| >gnl|CDD|218026 pfam04321, RmlD_sub_bind, RmlD substrate binding domain | Back alignment and domain information |
|---|
Score = 49.1 bits (118), Expect = 2e-06
Identities = 55/258 (21%), Positives = 87/258 (33%), Gaps = 56/258 (21%)
Query: 106 VNVEGTKNVIDACAELKVKRLIYTSSPSVVFDGVHGIINGNEALPYPPKH-----NDFYS 160
VN G N+ +ACA LI+ S+ VFD G + PY N Y
Sbjct: 75 VNALGPGNLAEACAARGA-PLIHIST-DYVFD-------GAKGGPYREDDPTGPLN-VYG 124
Query: 161 ATKAEGEALVIKANGTNGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGD--GN 218
TK GE V A L+ +R + ++G V +++ A ++ D G+
Sbjct: 125 RTKLAGEQAV-LAANPRHLI---LRTAWVYGEYGNNFVKTMLRLAAERDELRVVDDQLGS 180
Query: 219 NVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGY 278
T ++A A + AL + AG Y + +++F I + G
Sbjct: 181 P----TSARDLADALL----ALIRKRLRGPALAG-TYHLAGSGETSWYDFARAIFDEAGA 231
Query: 279 QRPRIKIPAFVMMPIAHMVELTYRLLGPYGMKVPQLTPSRVRLLSCSRTFDCSKAKDLLG 338
R++ PI P P+ L D SK + G
Sbjct: 232 DGGRVR-------PIPTA-----------EYPTPARRPANSVL-------DTSKLEATFG 266
Query: 339 YMPIVPLEEGIKRTVDSY 356
P+ E + +D
Sbjct: 267 I-PLPDWREALAEVLDEL 283
|
L-rhamnose is a saccharide required for the virulence of some bacteria. Its precursor, dTDP-L-rhamnose, is synthesised by four different enzymes the final one of which is RmlD. The RmlD substrate binding domain is responsible for binding a sugar nucleotide. Length = 284 |
| >gnl|CDD|187548 cd05237, UDP_invert_4-6DH_SDR_e, UDP-Glcnac (UDP-linked N-acetylglucosamine) inverting 4,6-dehydratase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 2e-06
Identities = 35/132 (26%), Positives = 57/132 (43%), Gaps = 22/132 (16%)
Query: 12 VTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDL 71
VTGG G LV ++++ + + D ++ E E L + ++ D+
Sbjct: 7 VTGGAGSIGSELVRQILKFGPKKLIVFDRDENKLHELVRE---LRSRFPHDKLRFIIGDV 63
Query: 72 RHKAQV--LQALQGAEVVFHMAA----------PNSSINNHKLHHSVNVEGTKNVIDACA 119
R K ++ +G ++VFH AA P +I NV GTKNVIDA
Sbjct: 64 RDKERLRRAFKERGPDIVFHAAALKHVPSMEDNPEEAIKT-------NVLGTKNVIDAAI 116
Query: 120 ELKVKRLIYTSS 131
E V++ + S+
Sbjct: 117 ENGVEKFVCIST 128
|
UDP-Glcnac inverting 4,6-dehydratase was identified in Helicobacter pylori as the hexameric flaA1 gene product (FlaA1). FlaA1 is hexameric, possesses UDP-GlcNAc-inverting 4,6-dehydratase activity, and catalyzes the first step in the creation of a pseudaminic acid derivative in protein glycosylation. Although this subgroup has the NADP-binding motif characteristic of extended SDRs, its members tend to have a Met substituted for the active site Tyr found in most SDR families. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 287 |
| >gnl|CDD|233954 TIGR02622, CDP_4_6_dhtase, CDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 3e-06
Identities = 83/332 (25%), Positives = 130/332 (39%), Gaps = 87/332 (26%)
Query: 70 DLRHKAQVLQALQGA--EVVFHMAAP---NSSINNHKLHHSVNVEGTKNVIDACAELKVK 124
D+R A++ +A+ E+VFH+AA S + NV GT N+++A +
Sbjct: 60 DIRDAAKLRKAIAEFKPEIVFHLAAQPLVRKSYADPLETFETNVMGTVNLLEAIRAIGSV 119
Query: 125 RLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDF------YSATKAEGEALVIKANGTNG 178
+ + + + N+ + + D YS++KA E LVI
Sbjct: 120 KAVVNVTSDKCYR--------NDEWVWGYRETDPLGGHDPYSSSKACAE-LVIA------ 164
Query: 179 LLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFT---YVANVAHAHIC 235
R SS FG + + +A+ARAG +IG G D+ + +V
Sbjct: 165 ----SYR-SSFFGVANFHGIK--IASARAGN---VIGGG----DWAEDRLIPDVI----- 205
Query: 236 AERALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGL-GY----QR---------- 280
RA +S V + N ++ + W+ V LE L GY ++
Sbjct: 206 --RAFSSNKIVI---------IRNPDATRPWQHV---LEPLSGYLLLAEKLFTGQAEFAG 251
Query: 281 -----PRIKIPAFVMMPIAHMVELTYRLLGPYGMKVPQLTPSRVRLLSCSRTFDCSKAKD 335
PR A V+ + +E + + P RLL D SKA+
Sbjct: 252 AWNFGPRASDNARVVELVVDALEFWWGDDAEWEDDSDLNHPHEARLLK----LDSSKART 307
Query: 336 LLGYMPIVPLEEGIKRTVDSYSH-LRAENQLK 366
LLG+ P LEE + RTVD Y LR E+ L+
Sbjct: 308 LLGWHPRWGLEEAVSRTVDWYKAWLRGEDMLQ 339
|
Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 349 |
| >gnl|CDD|217199 pfam02719, Polysacc_synt_2, Polysaccharide biosynthesis protein | Back alignment and domain information |
|---|
Score = 48.6 bits (117), Expect = 3e-06
Identities = 30/132 (22%), Positives = 57/132 (43%), Gaps = 22/132 (16%)
Query: 12 VTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDL 71
VTGG G L +++++ + + + E +E L + + + D+
Sbjct: 3 VTGGGGSIGSELCRQILKFNPKKIILFSRDEFKLYEIRQE---LRQEYNDPKLRFFIGDV 59
Query: 72 RHKAQVLQALQ--GAEVVFHMAA----------PNSSINNHKLHHSVNVEGTKNVIDACA 119
R + ++ +A++ G + VFH AA P +I NV GT+NV +A
Sbjct: 60 RDRERLERAMEQHGVDTVFHAAALKHVPLVEYNPMEAIKT-------NVLGTENVAEAAI 112
Query: 120 ELKVKRLIYTSS 131
E V++ + S+
Sbjct: 113 ENGVEKFVLIST 124
|
This is a family of diverse bacterial polysaccharide biosynthesis proteins including the CapD protein, WalL protein mannosyl-transferase and several putative epimerases (e.g. WbiI). Length = 280 |
| >gnl|CDD|178298 PLN02695, PLN02695, GDP-D-mannose-3',5'-epimerase | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 3e-06
Identities = 97/411 (23%), Positives = 148/411 (36%), Gaps = 92/411 (22%)
Query: 4 EENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGR 63
E R+C+ TG GF A H+ L + + SD E E E
Sbjct: 19 SEKLRICI-TGAGGFIASHIARRLKAEGHYII----ASDWKKNEHMSEDMFCHE------ 67
Query: 64 AHYVSFDLRHKAQVLQALQGAEVVFHMAAPNSSINNHKLHHSV----NVEGTKNVIDACA 119
+ DLR L+ +G + VF++AA + + +HSV N + N+++A
Sbjct: 68 --FHLVDLRVMENCLKVTKGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEAAR 125
Query: 120 ELKVKRLIYTSSPSVV--FDGVHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANGTN 177
VKR Y SS + F + ++ E+ +P + D Y K E L
Sbjct: 126 INGVKRFFYASSACIYPEFKQLETNVSLKESDAWPAEPQDAYGLEKLATEELCKHYTKDF 185
Query: 178 GLLTCCIRPSSIFGP-----GDRLLVP-SLVAAARAGKSKF-IIGDGNNVYDFTYVANVA 230
G+ R +I+GP G R P + A +F + GDG FT++
Sbjct: 186 GIECRIGRFHNIYGPFGTWKGGREKAPAAFCRKALTSTDEFEMWGDGKQTRSFTFIDE-- 243
Query: 231 HAHICAE---RALASEVTVAEKAAGQAYFVTNM---ESIKFWEFVSLILEGLGYQRPRIK 284
C E R S+ N+ E + E + L +
Sbjct: 244 ----CVEGVLRLTKSDFREP----------VNIGSDEMVSMNEMAEIALSFENKK----- 284
Query: 285 IPAFVMMPIAHMVELTYRLLGPYGMKVPQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVP 344
+PI H+ GP G VR R D + K+ LG+ P +
Sbjct: 285 ------LPIKHIP-------GPEG----------VR----GRNSDNTLIKEKLGWAPTMR 317
Query: 345 LEEGIKRT-----------VDSYSHLRAENQLKRVGPSKASVLLGSGRVAD 384
L++G++ T S A + K VG ++A V LGS R AD
Sbjct: 318 LKDGLRITYFWIKEQIEKEKAEGSDAAAYSSSKVVG-TQAPVQLGSLRAAD 367
|
Length = 370 |
| >gnl|CDD|132628 TIGR03589, PseB, UDP-N-acetylglucosamine 4,6-dehydratase | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 4e-06
Identities = 43/172 (25%), Positives = 73/172 (42%), Gaps = 31/172 (18%)
Query: 12 VTGGRGFAARHLVEMLI-RYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFD 70
+TGG G + + L+ Y+ + I D + +Q + + + + D
Sbjct: 9 ITGGTGSFGKAFISRLLENYNPKKIIIYS-RDEL------KQWEMQQKFPAPCLRFFIGD 61
Query: 71 LRHKAQVLQALQGAEVVFHMAA----PNSSINNHKLHHSVNVEGTKNVIDACAELKVKRL 126
+R K ++ +AL+G + V H AA P + N + + N+ G +NVIDA + VKR+
Sbjct: 62 VRDKERLTRALRGVDYVVHAAALKQVPAAEYNPFECIRT-NINGAQNVIDAAIDNGVKRV 120
Query: 127 IYTSSPSVVFDGVHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANGTNG 178
+ S+ D IN Y ATK + L + AN +G
Sbjct: 121 VALST-----DKAANPIN-------------LYGATKLASDKLFVAANNISG 154
|
This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family. Length = 324 |
| >gnl|CDD|178484 PLN02896, PLN02896, cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 5e-06
Identities = 44/146 (30%), Positives = 73/146 (50%), Gaps = 23/146 (15%)
Query: 2 SGEENE--RLCVVTGGRGFAARHLVEMLIRYD-MFSVRIADLSDSIALEPHEEQGILGEA 58
G E+ CV TG G+ LV++L++ + D + S+ L ++G +
Sbjct: 4 EGRESATGTYCV-TGATGYIGSWLVKLLLQRGYTVHATLRDPAKSLHLLSKWKEG---DR 59
Query: 59 LRSGRAHYVSFDLRHKAQVLQALQGAEVVFHMAAP-----NSSINNHKLHHSVNV----- 108
LR RA DL+ + +A++G + VFH+AA +S NN + + V
Sbjct: 60 LRLFRA-----DLQEEGSFDEAVKGCDGVFHVAASMEFDVSSDHNNIEEYVQSKVIDPAI 114
Query: 109 EGTKNVIDACAELK-VKRLIYTSSPS 133
+GT NV+ +C + K VKR+++TSS S
Sbjct: 115 KGTLNVLKSCLKSKTVKRVVFTSSIS 140
|
Length = 353 |
| >gnl|CDD|215100 PLN00198, PLN00198, anthocyanidin reductase; Provisional | Back alignment and domain information |
|---|
Score = 47.6 bits (113), Expect = 8e-06
Identities = 66/259 (25%), Positives = 110/259 (42%), Gaps = 31/259 (11%)
Query: 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGI--LGEALRSGRA 64
+ CV+ GG GF A L+++L++ ++V ++ +P ++ I L G
Sbjct: 10 KTACVI-GGTGFLASLLIKLLLQKG-YAV------NTTVRDPENQKKIAHLRALQELGDL 61
Query: 65 HYVSFDLRHKAQVLQALQGAEVVFHMAAPNSSINNHKLHHSVN--VEGTKNVIDACAELK 122
DL + + G ++VFH+A P + + + + ++G NV+ ACA+ K
Sbjct: 62 KIFGADLTDEESFEAPIAGCDLVFHVATPVNFASEDPENDMIKPAIQGVHNVLKACAKAK 121
Query: 123 -VKRLIYTSSPSVV----FDGVHGIINGN-----EALPYPPKHNDFYSATKAEGEALVIK 172
VKR+I TSS + V G ++N E L Y A+K E K
Sbjct: 122 SVKRVILTSSAAAVSINKLSGTGLVMNEKNWTDVEFLTSEKPPTWGYPASKTLAEKAAWK 181
Query: 173 ANGTNGLLTCCIRPSSIFGPGDRLLVPSLVAAARA---GKSKFIIGDG-----NNVYDFT 224
N + + P+ + GP +PS ++ A + G I G + T
Sbjct: 182 FAEENNIDLITVIPTLMAGPSLTSDIPSSLSLAMSLITGNEFLINGLKGMQMLSGSISIT 241
Query: 225 YVANVAHAHI-CAERALAS 242
+V +V AHI AE+ AS
Sbjct: 242 HVEDVCRAHIFLAEKESAS 260
|
Length = 338 |
| >gnl|CDD|224011 COG1086, COG1086, Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 1e-05
Identities = 42/183 (22%), Positives = 67/183 (36%), Gaps = 48/183 (26%)
Query: 12 VTGGRGFAARHLVEMLIRYDMFSVRIADLS----DSIALEPHEEQGILGEALRSGRAHYV 67
VTGG G L +++++ + + I +E L E + +
Sbjct: 255 VTGGGGSIGSELCRQILKFNPKEIILFSRDEYKLYLIDME-------LREKFPELKLRFY 307
Query: 68 SFDLRHKAQVLQALQGAEV--VFHMAA----------PNSSINNHKLHHSVNVEGTKNVI 115
D+R + +V +A++G +V VFH AA P +I NV GT+NV
Sbjct: 308 IGDVRDRDRVERAMEGHKVDIVFHAAALKHVPLVEYNPEEAIKT-------NVLGTENVA 360
Query: 116 DACAELKVKRLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANG 175
+A + VK+ + S+ V P + ATK E L AN
Sbjct: 361 EAAIKNGVKKFVLISTDKAV---------------NPT---NVMGATKRLAEKLFQAANR 402
Query: 176 TNG 178
Sbjct: 403 NVS 405
|
Length = 588 |
| >gnl|CDD|187549 cd05238, Gne_like_SDR_e, Escherichia coli Gne (a nucleoside-diphosphate-sugar 4-epimerase)-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 1e-05
Identities = 45/194 (23%), Positives = 75/194 (38%), Gaps = 32/194 (16%)
Query: 11 VVTGGRGFAARHLVEMLIRY-DMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSF 69
++TG GF + L E L+ + + D+ A P +
Sbjct: 4 LITGASGFVGQRLAERLLSDVPNERLILIDVVSPKA--PSGAPRV--------TQIAGDL 53
Query: 70 DLRHKAQVLQALQGAEVVFHMAAPNSSIN--NHKLHHSVNVEGTKNVIDACAEL-KVKRL 126
+ + L A +VVFH+AA S + L + VNV+GT+N+++A + R
Sbjct: 54 AVPALIEAL-ANGRPDVVFHLAAIVSGGAEADFDLGYRVNVDGTRNLLEALRKNGPKPRF 112
Query: 127 IYTSSPSVVFDGVHGIINGNEALPYP-PKHNDF-----YSATKAEGEALVIKANGTNGLL 180
++TSS + V+ LP P H Y A KA E L+ + +
Sbjct: 113 VFTSSLA-VYGL---------PLPNPVTDHTALDPASSYGAQKAMCELLLNDYSRRGFVD 162
Query: 181 TCCIRPSSI-FGPG 193
+R ++ PG
Sbjct: 163 GRTLRLPTVCVRPG 176
|
Nucleoside-diphosphate-sugar 4-epimerase has the characteristic active site tetrad and NAD-binding motif of the extended SDR, and is related to more specifically defined epimerases such as UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), which catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. This subgroup includes Escherichia coli 055:H7 Gne, a UDP-GlcNAc 4-epimerase, essential for O55 antigen synthesis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 305 |
| >gnl|CDD|235962 PRK07201, PRK07201, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 1e-05
Identities = 47/173 (27%), Positives = 69/173 (39%), Gaps = 27/173 (15%)
Query: 11 VVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRS----GRAHY 66
VTGG GF R LV L+ R A + L + L EAL + R
Sbjct: 4 FVTGGTGFIGRRLVSRLLDRR----REATVH---VLVRRQSLSRL-EALAAYWGADRVVP 55
Query: 67 VSFDLRHK-----AQVLQALQGAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAEL 121
+ DL + L + V H+AA + + + NV+GT+NV++ L
Sbjct: 56 LVGDLTEPGLGLSEADIAELGDIDHVVHLAAIYDLTADEEAQRAANVDGTRNVVELAERL 115
Query: 122 KVKRLIYTSSPSVV--FDGV--HGIINGNEALPYPPKHNDFYSATKAEGEALV 170
+ + SS +V ++GV + + LP P Y TK E E LV
Sbjct: 116 QAATFHHVSSIAVAGDYEGVFREDDFDEGQGLPTP------YHRTKFEAEKLV 162
|
Length = 657 |
| >gnl|CDD|187547 cd05236, FAR-N_SDR_e, fatty acyl CoA reductases (FARs), extended (e) SDRs | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 2e-05
Identities = 63/304 (20%), Positives = 98/304 (32%), Gaps = 69/304 (22%)
Query: 12 VTGGRGFAARHLVEMLIR--------YDM--------FSVRIADLSDSIALEPHEEQGIL 55
+TG GF + L+E L+R Y + R+ +L +
Sbjct: 5 ITGATGFLGKVLLEKLLRSCPDIGKIYLLIRGKSGQSAEERLRELLKDKLFDRGRNL--- 61
Query: 56 GEALRSGRAHYVSFDLRH-----KAQVLQALQG-AEVVFHMAAPNSSINNHKLHHSVNVE 109
L + + DL + LQ L ++ H AA + S+NV
Sbjct: 62 -NPLFESKIVPIEGDLSEPNLGLSDEDLQTLIEEVNIIIHCAATVTFDERLDEALSINVL 120
Query: 110 GTKNVIDACAELK-VKRLIYTS----------------SPSVVFDGVHGIIN-------G 145
GT +++ K +K ++ S P + + I+
Sbjct: 121 GTLRLLELAKRCKKLKAFVHVSTAYVNGDRQLIEEKVYPPPADPEKLIDILELMDDLELE 180
Query: 146 NEALPYPPKHNDFYSATKAEGEALVIKANGTNGLLTCCI-RPSSIFGPGDRLLVPS---- 200
H + Y+ TKA E LV+K G L I RP SI G + P
Sbjct: 181 RATPKLLGGHPNTYTFTKALAERLVLK---ERGNLPLVIVRP-SIVGATLKEPFPGWIDN 236
Query: 201 ------LVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQA 254
L A G + + D N V D V VA+A + A A+ V + +
Sbjct: 237 FNGPDGLFLAYGKGILRTMNADPNAVADIIPVDVVANALL----AAAAYSGVRKPRELEV 292
Query: 255 YFVT 258
Y
Sbjct: 293 YHCG 296
|
SDRs are Rossmann-fold NAD(P)H-binding proteins, many of which may function as fatty acyl CoA reductases (FAR), acting on medium and long chain fatty acids, and have been reported to be involved in diverse processes such as biosynthesis of insect pheromones, plant cuticular wax production, and mammalian wax biosynthesis. In Arabidopsis thaliana, proteins with this particular architecture have also been identified as the MALE STERILITY 2 (MS2) gene product, which is implicated in male gametogenesis. Mutations in MS2 inhibit the synthesis of exine (sporopollenin), rendering plants unable to reduce pollen wall fatty acids to corresponding alcohols. This N-terminal domain shares the catalytic triad (but not the upstream Asn) and characteristic NADP-binding motif of the extended SDR family. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 320 |
| >gnl|CDD|224012 COG1087, GalE, UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 46.4 bits (111), Expect = 2e-05
Identities = 66/258 (25%), Positives = 101/258 (39%), Gaps = 50/258 (19%)
Query: 12 VTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDL 71
VTGG G+ H V L++ V + +LS+ AL + + DL
Sbjct: 5 VTGGAGYIGSHTVRQLLKTGHEVVVLDNLSNGHK-----------IALLKLQFKFYEGDL 53
Query: 72 RHKAQVLQAL--QGAEVVFHMAA----PNSSINNHKLHHSVNVEGTKNVIDACAELKVKR 125
+A + + V H AA S N K + + NV GT N+I+A + VK+
Sbjct: 54 LDRALLTAVFEENKIDAVVHFAASISVGESVQNPLKYYDN-NVVGTLNLIEAMLQTGVKK 112
Query: 126 LIYTSSPSVVFDGVHGIINGNEALPYPPKH----NDFYSATKAEGEALVIKANGTNGLLT 181
I++S+ + V+G P + Y +K E ++ A N
Sbjct: 113 FIFSSTAA-----VYGE---PTTSPISETSPLAPINPYGRSKLMSEEILRDAAKANPFKV 164
Query: 182 CCIR--------PSSIFG---PGDRLLVPSLVAAARAGKSK--FIIG------DGNNVYD 222
+R P G PG LL+P AA GK FI G DG + D
Sbjct: 165 VILRYFNVAGACPDGTLGQRYPGATLLIPVAAEAA-LGKRDKLFIFGDDYDTKDGTCIRD 223
Query: 223 FTYVANVAHAHICAERAL 240
+ +V ++A AH+ A + L
Sbjct: 224 YIHVDDLADAHVLALKYL 241
|
Length = 329 |
| >gnl|CDD|177862 PLN02214, PLN02214, cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Score = 45.5 bits (107), Expect = 4e-05
Identities = 37/127 (29%), Positives = 61/127 (48%), Gaps = 11/127 (8%)
Query: 12 VTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYV--SF 69
VTG G+ A +V++L+ ++V+ P + + L G+ +
Sbjct: 15 VTGAGGYIASWIVKILLERG-YTVK------GTVRNPDDPKNTHLRELEGGKERLILCKA 67
Query: 70 DLRHKAQVLQALQGAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYT 129
DL+ + A+ G + VFH A+P + + +VN G K VI+A AE KVKR++ T
Sbjct: 68 DLQDYEALKAAIDGCDGVFHTASPVTDDPEQMVEPAVN--GAKFVINAAAEAKVKRVVIT 125
Query: 130 SSPSVVF 136
SS V+
Sbjct: 126 SSIGAVY 132
|
Length = 342 |
| >gnl|CDD|185103 PRK15181, PRK15181, Vi polysaccharide biosynthesis protein TviC; Provisional | Back alignment and domain information |
|---|
Score = 45.1 bits (106), Expect = 4e-05
Identities = 83/365 (22%), Positives = 129/365 (35%), Gaps = 65/365 (17%)
Query: 11 VVTGGRGFAARHLVEML-------IRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGR 63
++TG GF L+E L I D FS D + EEQ R
Sbjct: 19 LITGVAGFIGSGLLEELLFLNQTVIGLDNFSTGYQHNLDDVRTSVSEEQW--------SR 70
Query: 64 AHYVSFDLRHKAQVLQALQGAEVVFHMAAPNS---SINNHKLHHSVNVEGTKNVIDACAE 120
++ D+R +A + + V H AA S S+ + +S N++G N++ A +
Sbjct: 71 FIFIQGDIRKFTDCQKACKNVDYVLHQAALGSVPRSLKDPIATNSANIDGFLNMLTAARD 130
Query: 121 LKVKRLIYTSSPSVVFDGVHGIINGNE---ALPYPPKHNDFYSATKAEGEALVIKANGTN 177
V Y +S S D H + E P P Y+ TK E +
Sbjct: 131 AHVSSFTYAASSSTYGD--HPDLPKIEERIGRPLSP-----YAVTKYVNELYADVFARSY 183
Query: 178 GLLTCCIRPSSIFGPGDR------LLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAH 231
+R ++FG ++P + + + +I GDG+ DF Y+ NV
Sbjct: 184 EFNAIGLRYFNVFGRRQNPNGAYSAVIPRWILSLLKDEPIYINGDGSTSRDFCYIENVIQ 243
Query: 232 AHICAERALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMM 291
A+ L S T + + Y V + E LI +GL R
Sbjct: 244 AN------LLSATTNDLASKNKVYNVAVGDRTSLNELYYLIRDGLNLWRNE--------- 288
Query: 292 PIAHMVELTYRLLGPYGMKVPQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKR 351
E Y+ +K Q D +K K L Y P ++EG+K+
Sbjct: 289 --QSRAEPIYKDFRDGDVKHSQA--------------DITKIKTFLSYEPEFDIKEGLKQ 332
Query: 352 TVDSY 356
T+ Y
Sbjct: 333 TLKWY 337
|
Length = 348 |
| >gnl|CDD|187554 cd05243, SDR_a5, atypical (a) SDRs, subgroup 5 | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 6e-05
Identities = 41/182 (22%), Positives = 63/182 (34%), Gaps = 34/182 (18%)
Query: 11 VVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFD 70
+V G G RH+V L+ + VR AL Q E L + A V D
Sbjct: 3 LVVGATGKVGRHVVRELLDRG-YQVR--------ALVRDPSQA---EKLEAAGAEVVVGD 50
Query: 71 LRHKAQVLQALQGAEVVF--HMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIY 128
L + AL+G + V + V+ +G N+IDA + VKR +
Sbjct: 51 LTDAESLAAALEGIDAVISAAGSGGKGGPRTEA----VDYDGNINLIDAAKKAGVKRFVL 106
Query: 129 TSSPSVVFDGVHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANGTNGLLTCCIRPSS 188
SS I ++ + A K + E + + GL +RP
Sbjct: 107 VSS-----------IGADKPSHPLEALGPYLDA-KRKAEDYLRAS----GLDYTIVRPGG 150
Query: 189 IF 190
+
Sbjct: 151 LT 152
|
This subgroup contains atypical SDRs, some of which are identified as putative NAD(P)-dependent epimerases, one as a putative NAD-dependent epimerase/dehydratase. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif that is very similar to the extended SDRs, GXXGXXG, and binds NADP. Generally, this subgroup has poor conservation of the active site tetrad; however, individual sequences do contain matches to the YXXXK active site motif, the upstream Ser, and there is a highly conserved Asp in place of the usual active site Asn throughout the subgroup. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 203 |
| >gnl|CDD|177883 PLN02240, PLN02240, UDP-glucose 4-epimerase | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 1e-04
Identities = 34/129 (26%), Positives = 59/129 (45%), Gaps = 9/129 (6%)
Query: 12 VTGGRGFAARHLVEMLIRYDMFSVRIAD-LSDSIALEPHEEQGILGEALRSGRAHYVSFD 70
VTGG G+ H V L+ + V + D L +S + + G+ + D
Sbjct: 10 VTGGAGYIGSHTVLQLLLAG-YKVVVIDNLDNSSEEALRRVKELAGD--LGDNLVFHKVD 66
Query: 71 LRHKAQVLQ--ALQGAEVVFHMA---APNSSINNHKLHHSVNVEGTKNVIDACAELKVKR 125
LR K + + A + V H A A S+ L++ N+ GT N+++ A+ K+
Sbjct: 67 LRDKEALEKVFASTRFDAVIHFAGLKAVGESVAKPLLYYDNNLVGTINLLEVMAKHGCKK 126
Query: 126 LIYTSSPSV 134
L+++SS +V
Sbjct: 127 LVFSSSATV 135
|
Length = 352 |
| >gnl|CDD|236649 PRK10084, PRK10084, dTDP-glucose 4,6 dehydratase; Provisional | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 1e-04
Identities = 60/214 (28%), Positives = 85/214 (39%), Gaps = 40/214 (18%)
Query: 147 EALPYPPKHNDFYSATKAEGEALVIKANGTNGLLTCCIRPSSIFGPGD--RLLVPSLVAA 204
E Y P YSA+KA + LV T GL T S+ +GP L+P ++
Sbjct: 157 ETTAYAPSSP--YSASKASSDHLVRAWLRTYGLPTIVTNCSNNYGPYHFPEKLIPLVILN 214
Query: 205 ARAGKSKFIIGDGNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMESIK 264
A GK I G G+ + D+ YV + HA RAL VT E AG+ Y + K
Sbjct: 215 ALEGKPLPIYGKGDQIRDWLYVED--HA-----RALYKVVT--EGKAGETYNIGGHNEKK 265
Query: 265 FWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELTYRLLGPYGMKVPQLT--PSRVRLL 322
+ V I + L ++P A Y ++ + P R
Sbjct: 266 NLDVVLTICDLLD-----------EIVPKA----------TSYREQITYVADRPGHDRRY 304
Query: 323 SCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSY 356
+ D SK LG+ P E GI++TV+ Y
Sbjct: 305 A----IDASKISRELGWKPQETFESGIRKTVEWY 334
|
Length = 352 |
| >gnl|CDD|215370 PLN02686, PLN02686, cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 2e-04
Identities = 68/273 (24%), Positives = 110/273 (40%), Gaps = 35/273 (12%)
Query: 1 MSGEENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALR 60
+ E RL VTGG F +V+ L+R+ +SVRIA + E E + GE R
Sbjct: 48 GADAE-ARLVCVTGGVSFLGLAIVDRLLRHG-YSVRIA-VDTQEDKEKLREMEMFGEMGR 104
Query: 61 SGRAHY-VSFDLRHKAQVLQALQGAEVVFHMAA---PNSSINNHKLHHSVNVEGTKNVID 116
S + V +L + +A G VFH +A P K + + ++NVI+
Sbjct: 105 SNDGIWTVMANLTEPESLHEAFDGCAGVFHTSAFVDPAGLSGYTKSMAELEAKASENVIE 164
Query: 117 ACAELK-VKRLIYTSS---------PSVVFDGVHGIINGN----EALPYPPKHNDFYSAT 162
AC + V++ ++TSS +I+ E+ K +Y+
Sbjct: 165 ACVRTESVRKCVFTSSLLACVWRQNYPHDLP---PVIDEESWSDESFCRDNKL--WYALG 219
Query: 163 KAEGEALVIKANGTNGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYD 222
K + E +A GL I P+ + GPG + A G ++ ++ DG +
Sbjct: 220 KLKAEKAAWRAARGKGLKLATICPALVTGPGFFRRNSTATIAYLKG-AQEMLADG--LLA 276
Query: 223 FTYVANVAHAHICAERALASEVTVAEKAAGQAY 255
V +A AH+C A+ + K A Y
Sbjct: 277 TADVERLAEAHVCVYEAMGN------KTAFGRY 303
|
Length = 367 |
| >gnl|CDD|187555 cd05244, BVR-B_like_SDR_a, biliverdin IX beta reductase (BVR-B, aka flavin reductase)-like proteins; atypical (a) SDRs | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 2e-04
Identities = 28/127 (22%), Positives = 49/127 (38%), Gaps = 16/127 (12%)
Query: 70 DLRHKAQVLQALQGAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYT 129
D+ V +AL+G + V + ++ LH EGT+N++ A VKRLI
Sbjct: 49 DVLDLEDVKEALEGQDAVISALGTRNDLSPTTLHS----EGTRNIVSAMKAAGVKRLIVV 104
Query: 130 SSPSV--VFDGVHGIINGNEALPYPPKHNDFYSATKAEGEAL-VIKANGTNGLLTCCIRP 186
V +++ PP + L V++ +G + +RP
Sbjct: 105 GGAGSLDDRPKVTLVLDTLLF---PPA---LRRVAEDHARMLKVLRESGLDWTA---VRP 155
Query: 187 SSIFGPG 193
++F G
Sbjct: 156 PALFDGG 162
|
Human BVR-B catalyzes pyridine nucleotide-dependent production of bilirubin-IX beta during fetal development; in the adult BVR-B has flavin and ferric reductase activities. Human BVR-B catalyzes the reduction of FMN, FAD, and riboflavin. Recognition of flavin occurs mostly by hydrophobic interactions, accounting for the broad substrate specificity. Atypical SDRs are distinct from classical SDRs. BVR-B does not share the key catalytic triad, or conserved tyrosine typical of SDRs. The glycine-rich NADP-binding motif of BVR-B is GXXGXXG, which is similar but not identical to the pattern seen in extended SDRs. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 207 |
| >gnl|CDD|187561 cd05251, NmrA_like_SDR_a, NmrA (a transcriptional regulator) and HSCARG (an NADPH sensor) like proteins, atypical (a) SDRs | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 3e-04
Identities = 30/126 (23%), Positives = 47/126 (37%), Gaps = 19/126 (15%)
Query: 11 VVTGGRGFAARHLVEMLIRYDMFSVRIA--DLSDSIALEPHEEQGILGEALRSGRAHYVS 68
+V G G +V L++ F VR D S A +AL + V
Sbjct: 2 LVFGATGKQGGSVVRALLKDPGFKVRALTRDPSSPAA-----------KALAAPGVEVVQ 50
Query: 69 FDLRHKAQVLQALQGAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIY 128
DL + AL+G VF + + + + KNV+DA V+ ++
Sbjct: 51 GDLDDPESLEAALKGVYGVFLV------TDFWEAGGEDEIAQGKNVVDAAKRAGVQHFVF 104
Query: 129 TSSPSV 134
+S P V
Sbjct: 105 SSVPDV 110
|
NmrA and HSCARG like proteins. NmrA is a negative transcriptional regulator of various fungi, involved in the post-translational modulation of the GATA-type transcription factor AreA. NmrA lacks the canonical GXXGXXG NAD-binding motif and has altered residues at the catalytic triad, including a Met instead of the critical Tyr residue. NmrA may bind nucleotides but appears to lack any dehydrogenase activity. HSCARG has been identified as a putative NADP-sensing molecule, and redistributes and restructures in response to NADPH/NADP ratios. Like NmrA, it lacks most of the active site residues of the SDR family, but has an NAD(P)-binding motif similar to the extended SDR family, GXXGXXG. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Atypical SDRs are distinct from classical SDRs. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 242 |
| >gnl|CDD|187559 cd05248, ADP_GME_SDR_e, ADP-L-glycero-D-mannoheptose 6-epimerase (GME), extended (e) SDRs | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 4e-04
Identities = 36/138 (26%), Positives = 60/138 (43%), Gaps = 21/138 (15%)
Query: 11 VVTGGRGFAARHLVEMLIRYDMFSVRIAD-LSDSIALEPHEEQGILGEALRSGRAHYVSF 69
+VTGG GF +LV+ L + + + D LS+ + + ++G + A Y+
Sbjct: 3 IVTGGAGFIGSNLVKALNERGITDILVVDNLSNG-----EKFKNLVGLKI----ADYIDK 53
Query: 70 D-----LRHKAQVLQALQGAEVVFHMAAPNSSIN-NHKLHHSVNVEGTKNVIDACAELKV 123
D +R E +FH A + + + K N + TK ++ C E K+
Sbjct: 54 DDFKDWVRKG----DENFKIEAIFHQGACSDTTETDGKYMMDNNYQYTKELLHYCLEKKI 109
Query: 124 KRLIYTSSPSVVFDGVHG 141
R IY SS +V +G G
Sbjct: 110 -RFIYASSAAVYGNGSLG 126
|
This subgroup contains ADP-L-glycero-D-mannoheptose 6-epimerase, an extended SDR, which catalyzes the NAD-dependent interconversion of ADP-D-glycero-D-mannoheptose and ADP-L-glycero-D-mannoheptose. This subgroup has the canonical active site tetrad and NAD(P)-binding motif. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 317 |
| >gnl|CDD|191263 pfam05368, NmrA, NmrA-like family | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 0.002
Identities = 30/125 (24%), Positives = 50/125 (40%), Gaps = 19/125 (15%)
Query: 11 VVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFD 70
+V G G+ +V ++ VR AL + + L ++L++ V D
Sbjct: 2 LVFGATGYQGGSVVRASLK-AGHPVR--------ALV-RDPKSELAKSLKAAGVELVEGD 51
Query: 71 LRHKAQVLQALQGAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTS 130
L +++AL+G +VVF S S +E K + DA E VK I +
Sbjct: 52 LDDHESLVEALKGVDVVF------SVTGFWL---SKEIEDGKKLADAAKEAGVKHFIPSE 102
Query: 131 SPSVV 135
+ V
Sbjct: 103 FGNDV 107
|
NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families. Length = 232 |
| >gnl|CDD|223774 COG0702, COG0702, Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 39.5 bits (92), Expect = 0.002
Identities = 50/293 (17%), Positives = 85/293 (29%), Gaps = 61/293 (20%)
Query: 11 VVTGGRGFAARHLVEMLIRYDMFSVRIA----DLSDSIALEPHEEQGILGEALRSGRAHY 66
+VTG GF +V L+ VR A + + ++A G
Sbjct: 4 LVTGATGFVGGAVVRELLA-RGHEVRAAVRNPEAAAALAGGVEVVLG------------- 49
Query: 67 VSFDLRHKAQVLQALQGAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRL 126
DLR ++ +G + V + + ++ V V+ A
Sbjct: 50 ---DLRDPKSLVAGAKGVDGVLLI-SGLLDGSDAFRAVQVT-----AVVRAAEAAGAGVK 100
Query: 127 IYTSSPSVVFDGVHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANGTNGLLTCCIRP 186
S + A P + KA EA + + G +R
Sbjct: 101 HGVSLSVL------------GADAASPSA---LARAKAAVEAALRSS-GIPYTT---LRR 141
Query: 187 SSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICAERALASEVTV 246
++ + + A +I G V +VA A A
Sbjct: 142 AAFYLGAGAAFIE-----AAEAAGLPVIPRGIGRLSPIAVDDVAEALAAALD-------- 188
Query: 247 AEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVEL 299
A AG+ Y + E++ E S + +G RP IP + + L
Sbjct: 189 APATAGRTYELAGPEALTLAELASGLDYTIG--RPVGLIPEALAALTLALSGL 239
|
Length = 275 |
| >gnl|CDD|200381 TIGR04130, FnlA, UDP-N-acetylglucosamine 4,6-dehydratase/5-epimerase | Back alignment and domain information |
|---|
Score = 39.6 bits (92), Expect = 0.003
Identities = 30/134 (22%), Positives = 62/134 (46%), Gaps = 10/134 (7%)
Query: 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAH 65
+++ ++TGG G ++ + D+ +RI + ++Q + + + +
Sbjct: 3 KDKILLITGGTGSFGNAVLRRFLDTDIKEIRIFSRDE-------KKQDDMRKKYNNSKLK 55
Query: 66 YVSFDLRHKAQVLQALQGAEVVFHMAAPNS--SINNHKLHH-SVNVEGTKNVIDACAELK 122
+ D+R +L A +G + ++H AA S H + NV GT+NV++A
Sbjct: 56 FYIGDVRDYRSILNATRGVDFIYHAAALKQVPSCEFHPMEAVKTNVLGTENVLEAAIANG 115
Query: 123 VKRLIYTSSPSVVF 136
VKR++ S+ V+
Sbjct: 116 VKRVVCLSTDKAVY 129
|
The FnlA enzyme is the first step in the biosynthesis of UDP-FucNAc from UDP-GlcNAc in E. coli (along with FnlB and FnlC). The proteins identified by this model include FnlA homologs in the O-antigen clusters of O4, O25, O26, O29 (Shigella D11), O118, O145 and O172 serotype strains, all of which produce O-antigens containing FucNAc (or the further modified FucNAm). A homolog from Pseudomonas aerugiosa serotype O11, WbjB, also involved in the biosynthesis of UDP-FucNAc has been characterized and is now believed to carry out both the initial 4,6-dehydratase reaction and the subsequent epimerization of the resulting methyl group at C-5. A phylogenetic tree of related sequences shows a distinct clade of enzymes involved in the biosynthesis of UDP-QuiNAc (Qui=qinovosamine). This clade appears to be descendant from the common ancestor of the Pseudomonas and E. coli fucose-biosynthesis enzymes. It has been hypothesized that the first step in the biosynthesis of these two compounds may be the same, and thus that these enzymes all have the same function. At present, lacking sufficient confirmation of this, the current model trusted cutoff only covers the tree segment surrounding the E. coli genes. The clades containing the Pseudomonas and QuiNAc biosynthesis enzymes score above the noise cutoff. Immediately below the noise cutoff are enzymes involved in the biosynthesis of UDP-RhaNAc (Rha=rhamnose), which again may or may not produce the same product. Length = 337 |
| >gnl|CDD|233775 TIGR02197, heptose_epim, ADP-L-glycero-D-manno-heptose-6-epimerase | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 0.003
Identities = 34/135 (25%), Positives = 56/135 (41%), Gaps = 22/135 (16%)
Query: 11 VVTGGRGFAARHLVEMLIRYDMFSVRIAD-LSDSIALEPHEEQGILGEALRSGRAHYVSF 69
+VTGG GF +LV+ L + + + D L D H+ + + A Y+
Sbjct: 2 IVTGGAGFIGSNLVKALNERGITDILVVDNLRDG-----HKFLNLADLVI----ADYI-- 50
Query: 70 DLRHKAQVLQALQGA-----EVVFHMAAPNSSIN-NHKLHHSVNVEGTKNVIDACAELKV 123
K L L+ E +FH A + + + + N + +K ++D CAE +
Sbjct: 51 ---DKEDFLDRLEKGAFGKIEAIFHQGACSDTTETDGEYMMENNYQYSKRLLDWCAEKGI 107
Query: 124 KRLIYTSSPSVVFDG 138
IY SS + DG
Sbjct: 108 P-FIYASSAATYGDG 121
|
This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370) [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 314 |
| >gnl|CDD|187656 cd08953, KR_2_SDR_x, ketoreductase (KR), subgroup 2, complex (x) SDRs | Back alignment and domain information |
|---|
Score = 39.3 bits (92), Expect = 0.004
Identities = 36/149 (24%), Positives = 52/149 (34%), Gaps = 26/149 (17%)
Query: 11 VVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRS--GRAHYVS 68
+VTGG G R L L R + R+ L S E + AL + R Y+S
Sbjct: 209 LVTGGAGGIGRALARALAR--RYGARLVLLGRSPLPPEEEWKAQTLAALEALGARVLYIS 266
Query: 69 FDLRHKAQVLQALQGAE-------VVFHMAAPNSSINNHKLHH-----------SVNVEG 110
D+ A V + L+ V H A + L + V+G
Sbjct: 267 ADVTDAAAVRRLLEKVRERYGAIDGVIHAAG----VLRDALLAQKTAEDFEAVLAPKVDG 322
Query: 111 TKNVIDACAELKVKRLIYTSSPSVVFDGV 139
N+ A A+ + + SS S F G
Sbjct: 323 LLNLAQALADEPLDFFVLFSSVSAFFGGA 351
|
Ketoreductase, a module of the multidomain polyketide synthase (PKS), has 2 subdomains, each corresponding to a SDR family monomer. The C-terminal subdomain catalyzes the NADPH-dependent reduction of the beta-carbonyl of a polyketide to a hydroxyl group, a step in the biosynthesis of polyketides, such as erythromycin. The N-terminal subdomain, an interdomain linker, is a truncated Rossmann fold which acts to stabilizes the catalytic subdomain. Unlike typical SDRs, the isolated domain does not oligomerize but is composed of 2 subdomains, each resembling an SDR monomer. The active site resembles that of typical SDRs, except that the usual positions of the catalytic Asn and Tyr are swapped, so that the canonical YXXXK motif changes to YXXXN. Modular PKSs are multifunctional structures in which the makeup recapitulates that found in (and may have evolved from) FAS. Polyketide synthesis also proceeds via the addition of 2-carbon units as in fatty acid synthesis. The complex SDR NADP-binding motif, GGXGXXG, is often present, but is not strictly conserved in each instance of the module. This subfamily includes both KR domains of the Bacillus subtilis Pks J,-L, and PksM, and all three KR domains of PksN, components of the megacomplex bacillaene synthase, which synthesizes the antibiotic bacillaene. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type KRs have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 436 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 485 | |||
| KOG1430 | 361 | consensus C-3 sterol dehydrogenase/3-beta-hydroxys | 100.0 | |
| COG1087 | 329 | GalE UDP-glucose 4-epimerase [Cell envelope biogen | 100.0 | |
| COG1088 | 340 | RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope | 100.0 | |
| PRK15181 | 348 | Vi polysaccharide biosynthesis protein TviC; Provi | 100.0 | |
| PF01073 | 280 | 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/iso | 100.0 | |
| PRK11908 | 347 | NAD-dependent epimerase/dehydratase family protein | 100.0 | |
| PLN02166 | 436 | dTDP-glucose 4,6-dehydratase | 100.0 | |
| PLN02427 | 386 | UDP-apiose/xylose synthase | 100.0 | |
| PLN02695 | 370 | GDP-D-mannose-3',5'-epimerase | 100.0 | |
| PLN02206 | 442 | UDP-glucuronate decarboxylase | 100.0 | |
| PRK10217 | 355 | dTDP-glucose 4,6-dehydratase; Provisional | 100.0 | |
| PLN02572 | 442 | UDP-sulfoquinovose synthase | 100.0 | |
| PRK08125 | 660 | bifunctional UDP-glucuronic acid decarboxylase/UDP | 100.0 | |
| KOG0747 | 331 | consensus Putative NAD+-dependent epimerases [Carb | 100.0 | |
| KOG1429 | 350 | consensus dTDP-glucose 4-6-dehydratase/UDP-glucuro | 100.0 | |
| TIGR01472 | 343 | gmd GDP-mannose 4,6-dehydratase. Excluded from thi | 100.0 | |
| PLN02653 | 340 | GDP-mannose 4,6-dehydratase | 100.0 | |
| TIGR02622 | 349 | CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member | 100.0 | |
| PRK10084 | 352 | dTDP-glucose 4,6 dehydratase; Provisional | 100.0 | |
| TIGR03466 | 328 | HpnA hopanoid-associated sugar epimerase. The sequ | 100.0 | |
| PLN02260 | 668 | probable rhamnose biosynthetic enzyme | 100.0 | |
| PLN02214 | 342 | cinnamoyl-CoA reductase | 100.0 | |
| PLN02240 | 352 | UDP-glucose 4-epimerase | 100.0 | |
| KOG1371 | 343 | consensus UDP-glucose 4-epimerase/UDP-sulfoquinovo | 100.0 | |
| PLN00198 | 338 | anthocyanidin reductase; Provisional | 100.0 | |
| PRK09987 | 299 | dTDP-4-dehydrorhamnose reductase; Provisional | 100.0 | |
| PRK11150 | 308 | rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Pro | 100.0 | |
| PRK10675 | 338 | UDP-galactose-4-epimerase; Provisional | 100.0 | |
| TIGR01181 | 317 | dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This | 100.0 | |
| COG0451 | 314 | WcaG Nucleoside-diphosphate-sugar epimerases [Cell | 100.0 | |
| PLN02989 | 325 | cinnamyl-alcohol dehydrogenase family protein | 100.0 | |
| PLN02662 | 322 | cinnamyl-alcohol dehydrogenase family protein | 100.0 | |
| PLN02725 | 306 | GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductas | 100.0 | |
| PLN02986 | 322 | cinnamyl-alcohol dehydrogenase family protein | 100.0 | |
| PLN02650 | 351 | dihydroflavonol-4-reductase | 100.0 | |
| TIGR02197 | 314 | heptose_epim ADP-L-glycero-D-manno-heptose-6-epime | 100.0 | |
| PLN02896 | 353 | cinnamyl-alcohol dehydrogenase | 100.0 | |
| KOG1502 | 327 | consensus Flavonol reductase/cinnamoyl-CoA reducta | 100.0 | |
| PLN00016 | 378 | RNA-binding protein; Provisional | 100.0 | |
| TIGR01179 | 328 | galE UDP-glucose-4-epimerase. This enzyme intercon | 100.0 | |
| TIGR01214 | 287 | rmlD dTDP-4-dehydrorhamnose reductase. This enzyme | 100.0 | |
| CHL00194 | 317 | ycf39 Ycf39; Provisional | 100.0 | |
| PLN02686 | 367 | cinnamoyl-CoA reductase | 100.0 | |
| TIGR03589 | 324 | PseB UDP-N-acetylglucosamine 4,6-dehydratase. This | 100.0 | |
| PF04321 | 286 | RmlD_sub_bind: RmlD substrate binding domain; Inte | 100.0 | |
| PRK07201 | 657 | short chain dehydrogenase; Provisional | 100.0 | |
| COG1089 | 345 | Gmd GDP-D-mannose dehydratase [Cell envelope bioge | 100.0 | |
| PF01370 | 236 | Epimerase: NAD dependent epimerase/dehydratase fam | 100.0 | |
| KOG1431 | 315 | consensus GDP-L-fucose synthetase [Carbohydrate tr | 100.0 | |
| PRK05865 | 854 | hypothetical protein; Provisional | 100.0 | |
| COG1091 | 281 | RfbD dTDP-4-dehydrorhamnose reductase [Cell envelo | 100.0 | |
| PLN02996 | 491 | fatty acyl-CoA reductase | 100.0 | |
| PLN02657 | 390 | 3,8-divinyl protochlorophyllide a 8-vinyl reductas | 100.0 | |
| PLN02583 | 297 | cinnamoyl-CoA reductase | 99.97 | |
| TIGR01777 | 292 | yfcH conserved hypothetical protein TIGR01777. Thi | 99.97 | |
| PLN02778 | 298 | 3,5-epimerase/4-reductase | 99.97 | |
| COG1086 | 588 | Predicted nucleoside-diphosphate sugar epimerases | 99.97 | |
| PF02719 | 293 | Polysacc_synt_2: Polysaccharide biosynthesis prote | 99.97 | |
| TIGR01746 | 367 | Thioester-redct thioester reductase domain. It has | 99.97 | |
| PLN02503 | 605 | fatty acyl-CoA reductase 2 | 99.95 | |
| COG1090 | 297 | Predicted nucleoside-diphosphate sugar epimerase [ | 99.95 | |
| KOG1372 | 376 | consensus GDP-mannose 4,6 dehydratase [Carbohydrat | 99.95 | |
| TIGR03649 | 285 | ergot_EASG ergot alkaloid biosynthesis protein, AF | 99.94 | |
| PLN02260 | 668 | probable rhamnose biosynthetic enzyme | 99.94 | |
| PRK12320 | 699 | hypothetical protein; Provisional | 99.93 | |
| PF07993 | 249 | NAD_binding_4: Male sterility protein; InterPro: I | 99.93 | |
| KOG2865 | 391 | consensus NADH:ubiquinone oxidoreductase, NDUFA9/3 | 99.93 | |
| TIGR03443 | 1389 | alpha_am_amid L-aminoadipate-semialdehyde dehydrog | 99.92 | |
| COG3320 | 382 | Putative dehydrogenase domain of multifunctional n | 99.91 | |
| PLN00141 | 251 | Tic62-NAD(P)-related group II protein; Provisional | 99.9 | |
| KOG2774 | 366 | consensus NAD dependent epimerase [General functio | 99.89 | |
| PF13460 | 183 | NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X | 99.89 | |
| PRK13394 | 262 | 3-hydroxybutyrate dehydrogenase; Provisional | 99.89 | |
| PRK06482 | 276 | short chain dehydrogenase; Provisional | 99.88 | |
| PRK12825 | 249 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.87 | |
| PRK09135 | 249 | pteridine reductase; Provisional | 99.86 | |
| TIGR01963 | 255 | PHB_DH 3-hydroxybutyrate dehydrogenase. This model | 99.86 | |
| PRK12826 | 251 | 3-ketoacyl-(acyl-carrier-protein) reductase; Revie | 99.86 | |
| PF05368 | 233 | NmrA: NmrA-like family; InterPro: IPR008030 NmrA i | 99.86 | |
| PLN03209 | 576 | translocon at the inner envelope of chloroplast su | 99.86 | |
| PRK05875 | 276 | short chain dehydrogenase; Provisional | 99.85 | |
| PRK12429 | 258 | 3-hydroxybutyrate dehydrogenase; Provisional | 99.85 | |
| PRK08263 | 275 | short chain dehydrogenase; Provisional | 99.85 | |
| PRK07067 | 257 | sorbitol dehydrogenase; Provisional | 99.84 | |
| PRK05653 | 246 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.84 | |
| PRK12823 | 260 | benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylat | 99.84 | |
| PRK12829 | 264 | short chain dehydrogenase; Provisional | 99.84 | |
| PRK12828 | 239 | short chain dehydrogenase; Provisional | 99.84 | |
| PRK07074 | 257 | short chain dehydrogenase; Provisional | 99.84 | |
| PRK12745 | 256 | 3-ketoacyl-(acyl-carrier-protein) reductase; Provi | 99.84 | |
| PRK07774 | 250 | short chain dehydrogenase; Provisional | 99.83 | |
| PRK07806 | 248 | short chain dehydrogenase; Provisional | 99.83 | |
| PRK06194 | 287 | hypothetical protein; Provisional | 99.82 | |
| PRK07523 | 255 | gluconate 5-dehydrogenase; Provisional | 99.82 | |
| PRK05876 | 275 | short chain dehydrogenase; Provisional | 99.82 | |
| PRK06914 | 280 | short chain dehydrogenase; Provisional | 99.82 | |
| KOG1221 | 467 | consensus Acyl-CoA reductase [Lipid transport and | 99.82 | |
| PRK12827 | 249 | short chain dehydrogenase; Provisional | 99.82 | |
| PRK12384 | 259 | sorbitol-6-phosphate dehydrogenase; Provisional | 99.81 | |
| PRK06077 | 252 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.81 | |
| PRK06138 | 252 | short chain dehydrogenase; Provisional | 99.81 | |
| PRK07775 | 274 | short chain dehydrogenase; Provisional | 99.81 | |
| PRK07060 | 245 | short chain dehydrogenase; Provisional | 99.81 | |
| PRK07231 | 251 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.81 | |
| PRK12746 | 254 | short chain dehydrogenase; Provisional | 99.81 | |
| PRK12935 | 247 | acetoacetyl-CoA reductase; Provisional | 99.8 | |
| PRK06180 | 277 | short chain dehydrogenase; Provisional | 99.8 | |
| PRK07890 | 258 | short chain dehydrogenase; Provisional | 99.8 | |
| TIGR03206 | 250 | benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr | 99.8 | |
| PRK12939 | 250 | short chain dehydrogenase; Provisional | 99.8 | |
| PRK06182 | 273 | short chain dehydrogenase; Validated | 99.8 | |
| COG0702 | 275 | Predicted nucleoside-diphosphate-sugar epimerases | 99.8 | |
| PRK08063 | 250 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.8 | |
| PRK06128 | 300 | oxidoreductase; Provisional | 99.79 | |
| PRK08213 | 259 | gluconate 5-dehydrogenase; Provisional | 99.79 | |
| PRK09186 | 256 | flagellin modification protein A; Provisional | 99.79 | |
| PRK08220 | 252 | 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated | 99.79 | |
| PRK05557 | 248 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.78 | |
| PRK06701 | 290 | short chain dehydrogenase; Provisional | 99.78 | |
| PRK06123 | 248 | short chain dehydrogenase; Provisional | 99.78 | |
| PRK05717 | 255 | oxidoreductase; Validated | 99.78 | |
| PRK06500 | 249 | short chain dehydrogenase; Provisional | 99.78 | |
| PRK06523 | 260 | short chain dehydrogenase; Provisional | 99.77 | |
| PRK08324 | 681 | short chain dehydrogenase; Validated | 99.77 | |
| PRK12824 | 245 | acetoacetyl-CoA reductase; Provisional | 99.77 | |
| PLN02253 | 280 | xanthoxin dehydrogenase | 99.77 | |
| PRK07577 | 234 | short chain dehydrogenase; Provisional | 99.77 | |
| PRK08628 | 258 | short chain dehydrogenase; Provisional | 99.76 | |
| PRK09134 | 258 | short chain dehydrogenase; Provisional | 99.76 | |
| PRK06181 | 263 | short chain dehydrogenase; Provisional | 99.76 | |
| PRK07666 | 239 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.76 | |
| PRK06841 | 255 | short chain dehydrogenase; Provisional | 99.76 | |
| PRK05993 | 277 | short chain dehydrogenase; Provisional | 99.76 | |
| TIGR01830 | 239 | 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) re | 99.75 | |
| PRK08264 | 238 | short chain dehydrogenase; Validated | 99.75 | |
| PRK08217 | 253 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.75 | |
| PRK07985 | 294 | oxidoreductase; Provisional | 99.75 | |
| PRK12936 | 245 | 3-ketoacyl-(acyl-carrier-protein) reductase NodG; | 99.75 | |
| PRK06463 | 255 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.75 | |
| PRK06398 | 258 | aldose dehydrogenase; Validated | 99.75 | |
| PRK08219 | 227 | short chain dehydrogenase; Provisional | 99.74 | |
| PRK07453 | 322 | protochlorophyllide oxidoreductase; Validated | 99.74 | |
| PRK07063 | 260 | short chain dehydrogenase; Provisional | 99.74 | |
| PRK05565 | 247 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.74 | |
| PRK12937 | 245 | short chain dehydrogenase; Provisional | 99.74 | |
| PRK08642 | 253 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.74 | |
| TIGR01832 | 248 | kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod | 99.74 | |
| PRK08085 | 254 | gluconate 5-dehydrogenase; Provisional | 99.74 | |
| PRK12938 | 246 | acetyacetyl-CoA reductase; Provisional | 99.73 | |
| PRK07326 | 237 | short chain dehydrogenase; Provisional | 99.73 | |
| PRK12743 | 256 | oxidoreductase; Provisional | 99.73 | |
| PRK07856 | 252 | short chain dehydrogenase; Provisional | 99.73 | |
| PRK08017 | 256 | oxidoreductase; Provisional | 99.73 | |
| PRK12744 | 257 | short chain dehydrogenase; Provisional | 99.73 | |
| PRK07024 | 257 | short chain dehydrogenase; Provisional | 99.73 | |
| PRK06179 | 270 | short chain dehydrogenase; Provisional | 99.73 | |
| PRK09730 | 247 | putative NAD(P)-binding oxidoreductase; Provisiona | 99.73 | |
| PRK06172 | 253 | short chain dehydrogenase; Provisional | 99.73 | |
| PRK10538 | 248 | malonic semialdehyde reductase; Provisional | 99.73 | |
| PRK07814 | 263 | short chain dehydrogenase; Provisional | 99.73 | |
| PRK09242 | 257 | tropinone reductase; Provisional | 99.73 | |
| PRK09291 | 257 | short chain dehydrogenase; Provisional | 99.73 | |
| PRK06113 | 255 | 7-alpha-hydroxysteroid dehydrogenase; Validated | 99.73 | |
| PRK06057 | 255 | short chain dehydrogenase; Provisional | 99.72 | |
| PRK08277 | 278 | D-mannonate oxidoreductase; Provisional | 99.72 | |
| PRK07069 | 251 | short chain dehydrogenase; Validated | 99.72 | |
| PRK06550 | 235 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.71 | |
| PRK05650 | 270 | short chain dehydrogenase; Provisional | 99.71 | |
| PRK08643 | 256 | acetoin reductase; Validated | 99.71 | |
| PRK12747 | 252 | short chain dehydrogenase; Provisional | 99.71 | |
| PRK06198 | 260 | short chain dehydrogenase; Provisional | 99.71 | |
| PRK08267 | 260 | short chain dehydrogenase; Provisional | 99.71 | |
| PRK12742 | 237 | oxidoreductase; Provisional | 99.71 | |
| PRK06101 | 240 | short chain dehydrogenase; Provisional | 99.7 | |
| PRK07041 | 230 | short chain dehydrogenase; Provisional | 99.7 | |
| PRK07454 | 241 | short chain dehydrogenase; Provisional | 99.7 | |
| PRK06197 | 306 | short chain dehydrogenase; Provisional | 99.7 | |
| PRK07825 | 273 | short chain dehydrogenase; Provisional | 99.7 | |
| TIGR01829 | 242 | AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hy | 99.7 | |
| KOG1792 | 230 | consensus Reticulon [Intracellular trafficking, se | 99.7 | |
| PRK06935 | 258 | 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | 99.7 | |
| PRK06196 | 315 | oxidoreductase; Provisional | 99.7 | |
| PRK07035 | 252 | short chain dehydrogenase; Provisional | 99.7 | |
| PRK07478 | 254 | short chain dehydrogenase; Provisional | 99.7 | |
| PRK08265 | 261 | short chain dehydrogenase; Provisional | 99.7 | |
| PRK06949 | 258 | short chain dehydrogenase; Provisional | 99.7 | |
| PRK07109 | 334 | short chain dehydrogenase; Provisional | 99.7 | |
| PRK06124 | 256 | gluconate 5-dehydrogenase; Provisional | 99.69 | |
| PRK08251 | 248 | short chain dehydrogenase; Provisional | 99.69 | |
| PRK08226 | 263 | short chain dehydrogenase; Provisional | 99.69 | |
| PRK06114 | 254 | short chain dehydrogenase; Provisional | 99.69 | |
| TIGR02632 | 676 | RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alc | 99.69 | |
| PRK07576 | 264 | short chain dehydrogenase; Provisional | 99.69 | |
| PRK12748 | 256 | 3-ketoacyl-(acyl-carrier-protein) reductase; Provi | 99.68 | |
| PRK07097 | 265 | gluconate 5-dehydrogenase; Provisional | 99.68 | |
| PRK07102 | 243 | short chain dehydrogenase; Provisional | 99.68 | |
| PRK07831 | 262 | short chain dehydrogenase; Provisional | 99.68 | |
| PRK08339 | 263 | short chain dehydrogenase; Provisional | 99.68 | |
| PRK06947 | 248 | glucose-1-dehydrogenase; Provisional | 99.67 | |
| PRK08416 | 260 | 7-alpha-hydroxysteroid dehydrogenase; Provisional | 99.67 | |
| PRK05693 | 274 | short chain dehydrogenase; Provisional | 99.67 | |
| PRK12481 | 251 | 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | 99.67 | |
| PRK07677 | 252 | short chain dehydrogenase; Provisional | 99.67 | |
| PRK06139 | 330 | short chain dehydrogenase; Provisional | 99.67 | |
| PRK08936 | 261 | glucose-1-dehydrogenase; Provisional | 99.66 | |
| PRK06171 | 266 | sorbitol-6-phosphate 2-dehydrogenase; Provisional | 99.66 | |
| PRK07023 | 243 | short chain dehydrogenase; Provisional | 99.66 | |
| PRK06483 | 236 | dihydromonapterin reductase; Provisional | 99.66 | |
| PRK08589 | 272 | short chain dehydrogenase; Validated | 99.66 | |
| PRK08993 | 253 | 2-deoxy-D-gluconate 3-dehydrogenase; Validated | 99.66 | |
| PRK07904 | 253 | short chain dehydrogenase; Provisional | 99.65 | |
| PRK05867 | 253 | short chain dehydrogenase; Provisional | 99.65 | |
| PRK07062 | 265 | short chain dehydrogenase; Provisional | 99.65 | |
| TIGR02415 | 254 | 23BDH acetoin reductases. One member of this famil | 99.65 | |
| PRK05866 | 293 | short chain dehydrogenase; Provisional | 99.65 | |
| PRK08278 | 273 | short chain dehydrogenase; Provisional | 99.65 | |
| PRK05786 | 238 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.64 | |
| PRK07792 | 306 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.64 | |
| PRK08703 | 239 | short chain dehydrogenase; Provisional | 99.63 | |
| PRK06924 | 251 | short chain dehydrogenase; Provisional | 99.63 | |
| TIGR01831 | 239 | fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductas | 99.63 | |
| PRK09072 | 263 | short chain dehydrogenase; Provisional | 99.63 | |
| PRK06200 | 263 | 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog | 99.62 | |
| PRK06953 | 222 | short chain dehydrogenase; Provisional | 99.62 | |
| PRK06079 | 252 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.61 | |
| PRK06484 | 520 | short chain dehydrogenase; Validated | 99.61 | |
| PRK05854 | 313 | short chain dehydrogenase; Provisional | 99.61 | |
| PRK08945 | 247 | putative oxoacyl-(acyl carrier protein) reductase; | 99.61 | |
| PRK05872 | 296 | short chain dehydrogenase; Provisional | 99.61 | |
| PRK06125 | 259 | short chain dehydrogenase; Provisional | 99.6 | |
| TIGR02685 | 267 | pter_reduc_Leis pteridine reductase. Pteridine red | 99.59 | |
| COG4221 | 246 | Short-chain alcohol dehydrogenase of unknown speci | 99.59 | |
| PRK08340 | 259 | glucose-1-dehydrogenase; Provisional | 99.59 | |
| PRK07832 | 272 | short chain dehydrogenase; Provisional | 99.59 | |
| PRK12859 | 256 | 3-ketoacyl-(acyl-carrier-protein) reductase; Provi | 99.59 | |
| PRK07578 | 199 | short chain dehydrogenase; Provisional | 99.59 | |
| PRK06940 | 275 | short chain dehydrogenase; Provisional | 99.58 | |
| PRK05884 | 223 | short chain dehydrogenase; Provisional | 99.58 | |
| PRK07791 | 286 | short chain dehydrogenase; Provisional | 99.57 | |
| TIGR03325 | 262 | BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro | 99.57 | |
| PRK08594 | 257 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.57 | |
| PRK08261 | 450 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.56 | |
| COG2910 | 211 | Putative NADH-flavin reductase [General function p | 99.55 | |
| PRK06505 | 271 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.55 | |
| PRK07201 | 657 | short chain dehydrogenase; Provisional | 99.55 | |
| COG0300 | 265 | DltE Short-chain dehydrogenases of various substra | 99.54 | |
| PRK08177 | 225 | short chain dehydrogenase; Provisional | 99.54 | |
| smart00822 | 180 | PKS_KR This enzymatic domain is part of bacterial | 99.53 | |
| PRK09009 | 235 | C factor cell-cell signaling protein; Provisional | 99.53 | |
| PRK12367 | 245 | short chain dehydrogenase; Provisional | 99.52 | |
| PRK07424 | 406 | bifunctional sterol desaturase/short chain dehydro | 99.52 | |
| PRK07889 | 256 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.51 | |
| PRK05855 | 582 | short chain dehydrogenase; Validated | 99.51 | |
| PRK06603 | 260 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.5 | |
| PRK07370 | 258 | enoyl-(acyl carrier protein) reductase; Validated | 99.5 | |
| PRK08690 | 261 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.49 | |
| KOG3019 | 315 | consensus Predicted nucleoside-diphosphate sugar e | 99.49 | |
| PRK07533 | 258 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.49 | |
| PRK07984 | 262 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.49 | |
| TIGR01500 | 256 | sepiapter_red sepiapterin reductase. This model de | 99.48 | |
| PRK08415 | 274 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.48 | |
| PLN02780 | 320 | ketoreductase/ oxidoreductase | 99.47 | |
| PRK08159 | 272 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.47 | |
| PRK06997 | 260 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.46 | |
| PRK06484 | 520 | short chain dehydrogenase; Validated | 99.45 | |
| KOG4039 | 238 | consensus Serine/threonine kinase TIP30/CC3 [Signa | 99.41 | |
| TIGR01289 | 314 | LPOR light-dependent protochlorophyllide reductase | 99.41 | |
| KOG4288 | 283 | consensus Predicted oxidoreductase [General functi | 99.4 | |
| KOG1205 | 282 | consensus Predicted dehydrogenase [Secondary metab | 99.37 | |
| PRK12428 | 241 | 3-alpha-hydroxysteroid dehydrogenase; Provisional | 99.36 | |
| PRK08303 | 305 | short chain dehydrogenase; Provisional | 99.36 | |
| PF00106 | 167 | adh_short: short chain dehydrogenase alcohol dehyd | 99.33 | |
| KOG1203 | 411 | consensus Predicted dehydrogenase [Carbohydrate tr | 99.32 | |
| PRK05599 | 246 | hypothetical protein; Provisional | 99.31 | |
| PLN00015 | 308 | protochlorophyllide reductase | 99.31 | |
| PRK08862 | 227 | short chain dehydrogenase; Provisional | 99.3 | |
| KOG1201 | 300 | consensus Hydroxysteroid 17-beta dehydrogenase 11 | 99.3 | |
| KOG0725 | 270 | consensus Reductases with broad range of substrate | 99.27 | |
| PF08659 | 181 | KR: KR domain; InterPro: IPR013968 This domain is | 99.27 | |
| PLN02730 | 303 | enoyl-[acyl-carrier-protein] reductase | 99.25 | |
| KOG1208 | 314 | consensus Dehydrogenases with different specificit | 99.24 | |
| KOG1200 | 256 | consensus Mitochondrial/plastidial beta-ketoacyl-A | 99.24 | |
| KOG1209 | 289 | consensus 1-Acyl dihydroxyacetone phosphate reduct | 99.18 | |
| PF13561 | 241 | adh_short_C2: Enoyl-(Acyl carrier protein) reducta | 99.16 | |
| PRK06300 | 299 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.16 | |
| COG1028 | 251 | FabG Dehydrogenases with different specificities ( | 99.09 | |
| TIGR02813 | 2582 | omega_3_PfaA polyketide-type polyunsaturated fatty | 99.09 | |
| KOG1210 | 331 | consensus Predicted 3-ketosphinganine reductase [S | 99.07 | |
| KOG4169 | 261 | consensus 15-hydroxyprostaglandin dehydrogenase an | 99.07 | |
| COG3967 | 245 | DltE Short-chain dehydrogenase involved in D-alani | 99.04 | |
| PTZ00325 | 321 | malate dehydrogenase; Provisional | 99.03 | |
| KOG1610 | 322 | consensus Corticosteroid 11-beta-dehydrogenase and | 98.99 | |
| KOG1611 | 249 | consensus Predicted short chain-type dehydrogenase | 98.92 | |
| PLN00106 | 323 | malate dehydrogenase | 98.9 | |
| PF02453 | 169 | Reticulon: Reticulon; InterPro: IPR003388 Eukaryot | 98.82 | |
| KOG1207 | 245 | consensus Diacetyl reductase/L-xylulose reductase | 98.81 | |
| PRK08309 | 177 | short chain dehydrogenase; Provisional | 98.78 | |
| KOG1199 | 260 | consensus Short-chain alcohol dehydrogenase/3-hydr | 98.68 | |
| COG1748 | 389 | LYS9 Saccharopine dehydrogenase and related protei | 98.62 | |
| cd01336 | 325 | MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli | 98.59 | |
| PRK06720 | 169 | hypothetical protein; Provisional | 98.59 | |
| cd01338 | 322 | MDH_choloroplast_like Chloroplast-like malate dehy | 98.52 | |
| PRK09620 | 229 | hypothetical protein; Provisional | 98.45 | |
| KOG1014 | 312 | consensus 17 beta-hydroxysteroid dehydrogenase typ | 98.44 | |
| KOG1204 | 253 | consensus Predicted dehydrogenase [Secondary metab | 98.39 | |
| TIGR00715 | 256 | precor6x_red precorrin-6x reductase. This enzyme w | 98.26 | |
| PF03435 | 386 | Saccharop_dh: Saccharopine dehydrogenase ; InterPr | 98.26 | |
| PRK06732 | 229 | phosphopantothenate--cysteine ligase; Validated | 98.22 | |
| PRK05086 | 312 | malate dehydrogenase; Provisional | 98.2 | |
| cd00704 | 323 | MDH Malate dehydrogenase. Malate dehydrogenase (MD | 98.17 | |
| TIGR01758 | 324 | MDH_euk_cyt malate dehydrogenase, NAD-dependent. T | 98.05 | |
| COG0623 | 259 | FabI Enoyl-[acyl-carrier-protein] | 98.03 | |
| PF13950 | 62 | Epimerase_Csub: UDP-glucose 4-epimerase C-term sub | 98.0 | |
| KOG2733 | 423 | consensus Uncharacterized membrane protein [Functi | 97.96 | |
| PF00056 | 141 | Ldh_1_N: lactate/malate dehydrogenase, NAD binding | 97.81 | |
| cd01078 | 194 | NAD_bind_H4MPT_DH NADP binding domain of methylene | 97.81 | |
| PRK13656 | 398 | trans-2-enoyl-CoA reductase; Provisional | 97.73 | |
| KOG1478 | 341 | consensus 3-keto sterol reductase [Lipid transport | 97.71 | |
| PRK05579 | 399 | bifunctional phosphopantothenoylcysteine decarboxy | 97.67 | |
| PRK14982 | 340 | acyl-ACP reductase; Provisional | 97.66 | |
| cd05294 | 309 | LDH-like_MDH_nadp A lactate dehydrogenases-like st | 97.62 | |
| PLN02968 | 381 | Probable N-acetyl-gamma-glutamyl-phosphate reducta | 97.43 | |
| COG3268 | 382 | Uncharacterized conserved protein [Function unknow | 97.31 | |
| cd01337 | 310 | MDH_glyoxysomal_mitochondrial Glyoxysomal and mito | 97.29 | |
| TIGR01759 | 323 | MalateDH-SF1 malate dehydrogenase. This model repr | 97.28 | |
| PRK05442 | 326 | malate dehydrogenase; Provisional | 97.23 | |
| COG0569 | 225 | TrkA K+ transport systems, NAD-binding component [ | 97.23 | |
| PLN02819 | 1042 | lysine-ketoglutarate reductase/saccharopine dehydr | 97.22 | |
| PRK14874 | 334 | aspartate-semialdehyde dehydrogenase; Provisional | 97.18 | |
| TIGR02114 | 227 | coaB_strep phosphopantothenate--cysteine ligase, s | 97.14 | |
| PRK07688 | 339 | thiamine/molybdopterin biosynthesis ThiF/MoeB-like | 97.14 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 97.13 | |
| cd01485 | 198 | E1-1_like Ubiquitin activating enzyme (E1), repeat | 97.09 | |
| PF00899 | 135 | ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a | 97.09 | |
| COG0039 | 313 | Mdh Malate/lactate dehydrogenases [Energy producti | 97.08 | |
| PRK12475 | 338 | thiamine/molybdopterin biosynthesis MoeB-like prot | 97.04 | |
| PRK00066 | 315 | ldh L-lactate dehydrogenase; Reviewed | 97.03 | |
| PF01118 | 121 | Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi | 97.01 | |
| TIGR01772 | 312 | MDH_euk_gproteo malate dehydrogenase, NAD-dependen | 96.97 | |
| PF04127 | 185 | DFP: DNA / pantothenate metabolism flavoprotein; I | 96.97 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 96.94 | |
| TIGR00521 | 390 | coaBC_dfp phosphopantothenoylcysteine decarboxylas | 96.92 | |
| PF01113 | 124 | DapB_N: Dihydrodipicolinate reductase, N-terminus; | 96.91 | |
| KOG4022 | 236 | consensus Dihydropteridine reductase DHPR/QDPR [Am | 96.9 | |
| cd05291 | 306 | HicDH_like L-2-hydroxyisocapronate dehydrogenases | 96.89 | |
| PRK12548 | 289 | shikimate 5-dehydrogenase; Provisional | 96.81 | |
| cd01492 | 197 | Aos1_SUMO Ubiquitin activating enzyme (E1) subunit | 96.78 | |
| cd05295 | 452 | MDH_like Malate dehydrogenase-like. These MDH-like | 96.78 | |
| PLN02383 | 344 | aspartate semialdehyde dehydrogenase | 96.77 | |
| PRK14106 | 450 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.77 | |
| PRK05671 | 336 | aspartate-semialdehyde dehydrogenase; Reviewed | 96.76 | |
| COG4982 | 866 | 3-oxoacyl-[acyl-carrier protein] | 96.73 | |
| TIGR02356 | 202 | adenyl_thiF thiazole biosynthesis adenylyltransfer | 96.69 | |
| cd00757 | 228 | ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1 | 96.69 | |
| PTZ00117 | 319 | malate dehydrogenase; Provisional | 96.68 | |
| PF01488 | 135 | Shikimate_DH: Shikimate / quinate 5-dehydrogenase; | 96.6 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 96.6 | |
| PRK08664 | 349 | aspartate-semialdehyde dehydrogenase; Reviewed | 96.59 | |
| cd05290 | 307 | LDH_3 A subgroup of L-lactate dehydrogenases. L-la | 96.58 | |
| TIGR01850 | 346 | argC N-acetyl-gamma-glutamyl-phosphate reductase, | 96.53 | |
| PRK00436 | 343 | argC N-acetyl-gamma-glutamyl-phosphate reductase; | 96.52 | |
| PTZ00082 | 321 | L-lactate dehydrogenase; Provisional | 96.51 | |
| cd01483 | 143 | E1_enzyme_family Superfamily of activating enzymes | 96.47 | |
| PRK05690 | 245 | molybdopterin biosynthesis protein MoeB; Provision | 96.45 | |
| PRK08644 | 212 | thiamine biosynthesis protein ThiF; Provisional | 96.45 | |
| TIGR01757 | 387 | Malate-DH_plant malate dehydrogenase, NADP-depende | 96.45 | |
| TIGR02355 | 240 | moeB molybdopterin synthase sulfurylase MoeB. This | 96.43 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 96.43 | |
| cd05292 | 308 | LDH_2 A subgroup of L-lactate dehydrogenases. L-la | 96.36 | |
| TIGR01296 | 339 | asd_B aspartate-semialdehyde dehydrogenase (peptid | 96.36 | |
| PRK06223 | 307 | malate dehydrogenase; Reviewed | 96.31 | |
| PRK08328 | 231 | hypothetical protein; Provisional | 96.27 | |
| PRK06129 | 308 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 96.22 | |
| cd05293 | 312 | LDH_1 A subgroup of L-lactate dehydrogenases. L-la | 96.2 | |
| KOG1494 | 345 | consensus NAD-dependent malate dehydrogenase [Ener | 96.17 | |
| PRK00048 | 257 | dihydrodipicolinate reductase; Provisional | 96.16 | |
| PLN02602 | 350 | lactate dehydrogenase | 96.15 | |
| PLN00112 | 444 | malate dehydrogenase (NADP); Provisional | 96.14 | |
| KOG1202 | 2376 | consensus Animal-type fatty acid synthase and rela | 96.13 | |
| PRK08057 | 248 | cobalt-precorrin-6x reductase; Reviewed | 96.13 | |
| cd01489 | 312 | Uba2_SUMO Ubiquitin activating enzyme (E1) subunit | 96.11 | |
| PRK08223 | 287 | hypothetical protein; Validated | 96.05 | |
| TIGR01763 | 305 | MalateDH_bact malate dehydrogenase, NAD-dependent. | 96.05 | |
| cd00650 | 263 | LDH_MDH_like NAD-dependent, lactate dehydrogenase- | 96.03 | |
| PRK08762 | 376 | molybdopterin biosynthesis protein MoeB; Validated | 96.02 | |
| PF02571 | 249 | CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: | 96.01 | |
| PRK05597 | 355 | molybdopterin biosynthesis protein MoeB; Validated | 95.98 | |
| cd01487 | 174 | E1_ThiF_like E1_ThiF_like. Member of superfamily o | 95.89 | |
| PRK05600 | 370 | thiamine biosynthesis protein ThiF; Validated | 95.83 | |
| cd00755 | 231 | YgdL_like Family of activating enzymes (E1) of ubi | 95.65 | |
| PRK15116 | 268 | sulfur acceptor protein CsdL; Provisional | 95.63 | |
| PRK07878 | 392 | molybdopterin biosynthesis-like protein MoeZ; Vali | 95.61 | |
| TIGR00978 | 341 | asd_EA aspartate-semialdehyde dehydrogenase (non-p | 95.48 | |
| cd01484 | 234 | E1-2_like Ubiquitin activating enzyme (E1), repeat | 95.44 | |
| PRK06598 | 369 | aspartate-semialdehyde dehydrogenase; Reviewed | 95.42 | |
| PRK06019 | 372 | phosphoribosylaminoimidazole carboxylase ATPase su | 95.4 | |
| PRK11863 | 313 | N-acetyl-gamma-glutamyl-phosphate reductase; Provi | 95.34 | |
| cd01065 | 155 | NAD_bind_Shikimate_DH NAD(P) binding domain of Shi | 95.33 | |
| cd01080 | 168 | NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of | 95.31 | |
| KOG0023 | 360 | consensus Alcohol dehydrogenase, class V [Secondar | 95.31 | |
| PRK03659 | 601 | glutathione-regulated potassium-efflux system prot | 95.28 | |
| cd00300 | 300 | LDH_like L-lactate dehydrogenase-like enzymes. Mem | 95.26 | |
| COG1179 | 263 | Dinucleotide-utilizing enzymes involved in molybdo | 95.26 | |
| KOG0172 | 445 | consensus Lysine-ketoglutarate reductase/saccharop | 95.18 | |
| PRK07877 | 722 | hypothetical protein; Provisional | 95.17 | |
| PF03446 | 163 | NAD_binding_2: NAD binding domain of 6-phosphogluc | 95.14 | |
| PRK07066 | 321 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 95.13 | |
| PRK14192 | 283 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.12 | |
| TIGR02354 | 200 | thiF_fam2 thiamine biosynthesis protein ThiF, fami | 95.09 | |
| PRK11064 | 415 | wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro | 95.05 | |
| cd01493 | 425 | APPBP1_RUB Ubiquitin activating enzyme (E1) subuni | 95.02 | |
| TIGR03693 | 637 | ocin_ThiF_like putative thiazole-containing bacter | 94.98 | |
| COG0002 | 349 | ArgC Acetylglutamate semialdehyde dehydrogenase [A | 94.95 | |
| PRK06728 | 347 | aspartate-semialdehyde dehydrogenase; Provisional | 94.94 | |
| PRK10669 | 558 | putative cation:proton antiport protein; Provision | 94.93 | |
| COG0289 | 266 | DapB Dihydrodipicolinate reductase [Amino acid tra | 94.85 | |
| KOG1198 | 347 | consensus Zinc-binding oxidoreductase [Energy prod | 94.81 | |
| PRK08040 | 336 | putative semialdehyde dehydrogenase; Provisional | 94.77 | |
| cd01491 | 286 | Ube1_repeat1 Ubiquitin activating enzyme (E1), rep | 94.77 | |
| PRK07411 | 390 | hypothetical protein; Validated | 94.72 | |
| KOG2018 | 430 | consensus Predicted dinucleotide-utilizing enzyme | 94.71 | |
| PRK11199 | 374 | tyrA bifunctional chorismate mutase/prephenate deh | 94.69 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 94.64 | |
| TIGR02853 | 287 | spore_dpaA dipicolinic acid synthetase, A subunit. | 94.6 | |
| PRK03562 | 621 | glutathione-regulated potassium-efflux system prot | 94.54 | |
| TIGR02717 | 447 | AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP | 94.51 | |
| TIGR01851 | 310 | argC_other N-acetyl-gamma-glutamyl-phosphate reduc | 94.48 | |
| cd01339 | 300 | LDH-like_MDH L-lactate dehydrogenase-like malate d | 94.44 | |
| PRK14175 | 286 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.41 | |
| TIGR01470 | 205 | cysG_Nterm siroheme synthase, N-terminal domain. T | 94.33 | |
| PRK02472 | 447 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 94.33 | |
| TIGR01019 | 286 | sucCoAalpha succinyl-CoA synthetase, alpha subunit | 94.26 | |
| PRK13982 | 475 | bifunctional SbtC-like/phosphopantothenoylcysteine | 94.25 | |
| cd08295 | 338 | double_bond_reductase_like Arabidopsis alkenal dou | 94.24 | |
| PRK06718 | 202 | precorrin-2 dehydrogenase; Reviewed | 94.16 | |
| PRK14852 | 989 | hypothetical protein; Provisional | 94.15 | |
| PF03721 | 185 | UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen | 94.11 | |
| KOG1496 | 332 | consensus Malate dehydrogenase [Energy production | 94.1 | |
| TIGR00518 | 370 | alaDH alanine dehydrogenase. The family of known L | 94.09 | |
| PRK14851 | 679 | hypothetical protein; Provisional | 94.08 | |
| COG0604 | 326 | Qor NADPH:quinone reductase and related Zn-depende | 94.01 | |
| PF02882 | 160 | THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl | 93.98 | |
| TIGR02825 | 325 | B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15 | 93.95 | |
| PRK05678 | 291 | succinyl-CoA synthetase subunit alpha; Validated | 93.93 | |
| PRK09288 | 395 | purT phosphoribosylglycinamide formyltransferase 2 | 93.93 | |
| cd08259 | 332 | Zn_ADH5 Alcohol dehydrogenases of the MDR family. | 93.9 | |
| TIGR01915 | 219 | npdG NADPH-dependent F420 reductase. This model re | 93.9 | |
| cd05213 | 311 | NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain | 93.9 | |
| PF00070 | 80 | Pyr_redox: Pyridine nucleotide-disulphide oxidored | 93.89 | |
| COG0026 | 375 | PurK Phosphoribosylaminoimidazole carboxylase (NCA | 93.8 | |
| TIGR03026 | 411 | NDP-sugDHase nucleotide sugar dehydrogenase. All o | 93.76 | |
| PF10087 | 97 | DUF2325: Uncharacterized protein conserved in bact | 93.76 | |
| PRK14194 | 301 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 93.72 | |
| COG1004 | 414 | Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en | 93.69 | |
| PF08732 | 410 | HIM1: HIM1; InterPro: IPR014843 HIM1 (high inducti | 93.66 | |
| cd01486 | 307 | Apg7 Apg7 is an E1-like protein, that activates tw | 93.63 | |
| PRK08655 | 437 | prephenate dehydrogenase; Provisional | 93.57 | |
| PLN02353 | 473 | probable UDP-glucose 6-dehydrogenase | 93.55 | |
| PRK13940 | 414 | glutamyl-tRNA reductase; Provisional | 93.51 | |
| PRK06849 | 389 | hypothetical protein; Provisional | 93.47 | |
| TIGR01771 | 299 | L-LDH-NAD L-lactate dehydrogenase. This model repr | 93.41 | |
| PRK10537 | 393 | voltage-gated potassium channel; Provisional | 93.39 | |
| PRK00258 | 278 | aroE shikimate 5-dehydrogenase; Reviewed | 93.19 | |
| COG2099 | 257 | CobK Precorrin-6x reductase [Coenzyme metabolism] | 93.14 | |
| PRK14619 | 308 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 93.11 | |
| COG2085 | 211 | Predicted dinucleotide-binding enzymes [General fu | 93.08 | |
| PRK00045 | 423 | hemA glutamyl-tRNA reductase; Reviewed | 93.07 | |
| TIGR01408 | 1008 | Ube1 ubiquitin-activating enzyme E1. This model re | 92.94 | |
| PF13241 | 103 | NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_ | 92.84 | |
| smart00859 | 122 | Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin | 92.75 | |
| PRK13302 | 271 | putative L-aspartate dehydrogenase; Provisional | 92.64 | |
| cd01079 | 197 | NAD_bind_m-THF_DH NAD binding domain of methylene- | 92.6 | |
| cd08266 | 342 | Zn_ADH_like1 Alcohol dehydrogenases of the MDR fam | 92.58 | |
| PRK10792 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 92.58 | |
| TIGR01035 | 417 | hemA glutamyl-tRNA reductase. This enzyme, togethe | 92.57 | |
| TIGR01142 | 380 | purT phosphoribosylglycinamide formyltransferase 2 | 92.48 | |
| cd05212 | 140 | NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom | 92.47 | |
| PRK08293 | 287 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 92.46 | |
| PRK15469 | 312 | ghrA bifunctional glyoxylate/hydroxypyruvate reduc | 92.46 | |
| PRK14188 | 296 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 92.44 | |
| cd05188 | 271 | MDR Medium chain reductase/dehydrogenase (MDR)/zin | 92.42 | |
| PRK08818 | 370 | prephenate dehydrogenase; Provisional | 92.37 | |
| PRK12749 | 288 | quinate/shikimate dehydrogenase; Reviewed | 92.33 | |
| PLN02775 | 286 | Probable dihydrodipicolinate reductase | 92.2 | |
| cd01490 | 435 | Ube1_repeat2 Ubiquitin activating enzyme (E1), rep | 92.13 | |
| cd01488 | 291 | Uba3_RUB Ubiquitin activating enzyme (E1) subunit | 92.07 | |
| TIGR01381 | 664 | E1_like_apg7 E1-like protein-activating enzyme Gsa | 92.05 | |
| PLN03154 | 348 | putative allyl alcohol dehydrogenase; Provisional | 92.03 | |
| PRK07819 | 286 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 91.99 | |
| PRK15182 | 425 | Vi polysaccharide biosynthesis protein TviB; Provi | 91.98 | |
| PRK07574 | 385 | formate dehydrogenase; Provisional | 91.9 | |
| PRK14191 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 91.89 | |
| COG0027 | 394 | PurT Formate-dependent phosphoribosylglycinamide f | 91.87 | |
| PRK14179 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 91.83 | |
| PRK14176 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 91.77 | |
| PRK14189 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 91.77 | |
| PRK06153 | 393 | hypothetical protein; Provisional | 91.74 | |
| TIGR03451 | 358 | mycoS_dep_FDH mycothiol-dependent formaldehyde deh | 91.69 | |
| PRK06130 | 311 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 91.68 | |
| cd08230 | 355 | glucose_DH Glucose dehydrogenase. Glucose dehydrog | 91.65 |
| >KOG1430 consensus C-3 sterol dehydrogenase/3-beta-hydroxysteroid dehydrogenase and related dehydrogenases [Lipid transport and metabolism; Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-49 Score=384.57 Aligned_cols=344 Identities=47% Similarity=0.735 Sum_probs=309.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcC-CceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCC
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYD-MFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGA 84 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G-~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 84 (485)
++.+||||||+||+|+|++++|++++ ..+|+++|..+.......+..+. ....++++.+|++|...+..+++++
T Consensus 3 ~~~~vlVtGG~GflG~hlv~~L~~~~~~~~irv~D~~~~~~~~~~e~~~~-----~~~~v~~~~~D~~~~~~i~~a~~~~ 77 (361)
T KOG1430|consen 3 KKLSVLVTGGSGFLGQHLVQALLENELKLEIRVVDKTPTQSNLPAELTGF-----RSGRVTVILGDLLDANSISNAFQGA 77 (361)
T ss_pred cCCEEEEECCccHHHHHHHHHHHhcccccEEEEeccCccccccchhhhcc-----cCCceeEEecchhhhhhhhhhccCc
Confidence 35799999999999999999999998 56999999887633333222111 3578999999999999999999999
Q ss_pred CEEEEcCC-C--CCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCccccccCCCCcCCCCCCCCCCCCCCchHHH
Q 047227 85 EVVFHMAA-P--NSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDFYSA 161 (485)
Q Consensus 85 d~Vih~aa-~--~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy~~~~~~~~~~~e~~~~~~~~~~~Y~~ 161 (485)
.|+|+|+ . .-...+++..+++|+.||.|++++|++.|++++||+||++|++++.. ..+.+|+.|+|....++|+.
T Consensus 78 -~Vvh~aa~~~~~~~~~~~~~~~~vNV~gT~nvi~~c~~~~v~~lIYtSs~~Vvf~g~~-~~n~~E~~p~p~~~~d~Y~~ 155 (361)
T KOG1430|consen 78 -VVVHCAASPVPDFVENDRDLAMRVNVNGTLNVIEACKELGVKRLIYTSSAYVVFGGEP-IINGDESLPYPLKHIDPYGE 155 (361)
T ss_pred -eEEEeccccCccccccchhhheeecchhHHHHHHHHHHhCCCEEEEecCceEEeCCee-cccCCCCCCCccccccccch
Confidence 8888888 2 22333688999999999999999999999999999999999987766 78899999999888899999
Q ss_pred HHHHHHHHHHHHhCCCCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCceeecccHHHHHHHHHHHHHHhc
Q 047227 162 TKAEGEALVIKANGTNGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICAERALA 241 (485)
Q Consensus 162 sK~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~D~a~a~~~~~~~~~ 241 (485)
||+.+|++++++++..++.+|+|||+.||||++...++.++..++.|+.+...|+++.+.|++|++++|.+++++..++.
T Consensus 156 sKa~aE~~Vl~an~~~~l~T~aLR~~~IYGpgd~~~~~~i~~~~~~g~~~f~~g~~~~~~~~~~~~Nva~ahilA~~aL~ 235 (361)
T KOG1430|consen 156 SKALAEKLVLEANGSDDLYTCALRPPGIYGPGDKRLLPKIVEALKNGGFLFKIGDGENLNDFTYGENVAWAHILAARALL 235 (361)
T ss_pred HHHHHHHHHHHhcCCCCeeEEEEccccccCCCCccccHHHHHHHHccCceEEeeccccccceEEechhHHHHHHHHHHHH
Confidence 99999999999988778999999999999999999999999999999999999999999999999999999999999888
Q ss_pred cccchhhccCCcEEEeeCCCCccHHHHHHHHHHHcCCCCC-CccCCHHHHHHHHHHHHHHHHHhCCCCCCCCCCCHHHHH
Q 047227 242 SEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRP-RIKIPAFVMMPIAHMVELTYRLLGPYGMKVPQLTPSRVR 320 (485)
Q Consensus 242 ~~~~~~~~~~g~~ynv~~~~~~t~~el~~~i~~~~g~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 320 (485)
.. .+...|+.|+|++++++..++++..+.+.+|++.+ .+..|.+++..++.+.++.+..++| ..|.+++...+
T Consensus 236 ~~---~~~~~Gq~yfI~d~~p~~~~~~~~~l~~~lg~~~~~~~~~p~~l~~~~~~l~e~~~~~l~p---~~p~lt~~~v~ 309 (361)
T KOG1430|consen 236 DK---SPSVNGQFYFITDDTPVRFFDFLSPLVKALGYCLPSSIKLPLFLSYFLAYLLEIVYFLLRP---YQPILTRFRVA 309 (361)
T ss_pred hc---CCccCceEEEEeCCCcchhhHHHHHHHHhcCCCCCceeecchHHHHHHHHHHHHHHHhccC---CCCCcChhhee
Confidence 54 56789999999999999999999999999999999 7889999999999999999999987 56788899999
Q ss_pred hhccceeeehhhHHhhcCCCCCCChHHHHHHHHHHHHHhHhc
Q 047227 321 LLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSYSHLRAE 362 (485)
Q Consensus 321 ~~~~~~~~d~~ka~~~lG~~p~~~l~e~i~~~~~~~~~~~~~ 362 (485)
.+....+||+.||+++|||.|..+++|++.+++.|+......
T Consensus 310 ~~~~~~~f~~~kA~~~lgY~P~~~~~e~~~~~~~~~~~~~~~ 351 (361)
T KOG1430|consen 310 LLGVTRTFSIEKAKRELGYKPLVSLEEAIQRTIHWVASESDS 351 (361)
T ss_pred eeccccccCHHHHHHhhCCCCcCCHHHHHHHHHHHHhhhhhc
Confidence 999899999999999999999999999999999999886654
|
|
| >COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-49 Score=362.30 Aligned_cols=299 Identities=25% Similarity=0.298 Sum_probs=250.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc--CCC
Q 047227 8 RLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ--GAE 85 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--~~d 85 (485)
|+||||||+||||+|.+..|++.| ++|.++|+-.... ...+....++++.+|++|.+.+.++|+ ++|
T Consensus 1 ~~iLVtGGAGYIGSHtv~~Ll~~G-~~vvV~DNL~~g~----------~~~v~~~~~~f~~gDi~D~~~L~~vf~~~~id 69 (329)
T COG1087 1 MKVLVTGGAGYIGSHTVRQLLKTG-HEVVVLDNLSNGH----------KIALLKLQFKFYEGDLLDRALLTAVFEENKID 69 (329)
T ss_pred CeEEEecCcchhHHHHHHHHHHCC-CeEEEEecCCCCC----------HHHhhhccCceEEeccccHHHHHHHHHhcCCC
Confidence 689999999999999999999999 5999998765422 111211126899999999999999996 499
Q ss_pred EEEEcCC---CCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCccccccCCCCcCCCCCCCCCCCCCCchHHHH
Q 047227 86 VVFHMAA---PNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDFYSAT 162 (485)
Q Consensus 86 ~Vih~aa---~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy~~~~~~~~~~~e~~~~~~~~~~~Y~~s 162 (485)
+|||+|| +..+..+|..+++.|+.||.+|+++|++.|+++|||.||+.|||+... .|..|+.| ..|.++||+|
T Consensus 70 aViHFAa~~~VgESv~~Pl~Yy~NNv~gTl~Ll~am~~~gv~~~vFSStAavYG~p~~--~PI~E~~~--~~p~NPYG~s 145 (329)
T COG1087 70 AVVHFAASISVGESVQNPLKYYDNNVVGTLNLIEAMLQTGVKKFIFSSTAAVYGEPTT--SPISETSP--LAPINPYGRS 145 (329)
T ss_pred EEEECccccccchhhhCHHHHHhhchHhHHHHHHHHHHhCCCEEEEecchhhcCCCCC--cccCCCCC--CCCCCcchhH
Confidence 9999999 556778999999999999999999999999999999999999975544 56677665 5799999999
Q ss_pred HHHHHHHHHHHhCCCCceEEEEecCCcccCCCC-----------CChHHHHHHHHcCCC-eEEec------CCCceeecc
Q 047227 163 KAEGEALVIKANGTNGLLTCCIRPSSIFGPGDR-----------LLVPSLVAAARAGKS-KFIIG------DGNNVYDFT 224 (485)
Q Consensus 163 K~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~-----------~~~~~~~~~~~~g~~-~~~~g------~g~~~~~~i 224 (485)
|.+.|++++.+.+.++++.++||..|+.|.... ..+|..+..+...++ +.++| ||...||||
T Consensus 146 Klm~E~iL~d~~~a~~~~~v~LRYFN~aGA~~~G~iGe~~~~~thLip~~~q~A~G~r~~l~ifG~DY~T~DGT~iRDYI 225 (329)
T COG1087 146 KLMSEEILRDAAKANPFKVVILRYFNVAGACPDGTLGQRYPGATLLIPVAAEAALGKRDKLFIFGDDYDTKDGTCIRDYI 225 (329)
T ss_pred HHHHHHHHHHHHHhCCCcEEEEEecccccCCCCCccCCCCCCcchHHHHHHHHHhcCCceeEEeCCCCCCCCCCeeeeee
Confidence 999999999999999999999999999996432 357777776665555 67777 577899999
Q ss_pred cHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCCCccHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHh
Q 047227 225 YVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELTYRLL 304 (485)
Q Consensus 225 ~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~~t~~el~~~i~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~ 304 (485)
||.|+|.+++.+++.+..+ ....+||++++...|+.|+++.+.++.|.+.+....|-
T Consensus 226 HV~DLA~aH~~Al~~L~~~------g~~~~~NLG~G~G~SV~evi~a~~~vtg~~ip~~~~~R----------------- 282 (329)
T COG1087 226 HVDDLADAHVLALKYLKEG------GSNNIFNLGSGNGFSVLEVIEAAKKVTGRDIPVEIAPR----------------- 282 (329)
T ss_pred ehhHHHHHHHHHHHHHHhC------CceeEEEccCCCceeHHHHHHHHHHHhCCcCceeeCCC-----------------
Confidence 9999999999999987764 33369999999999999999999999998765433221
Q ss_pred CCCCCCCCCCCHHHHHhhccceeeehhhHHhhcCCCCCC-ChHHHHHHHHHHHHH
Q 047227 305 GPYGMKVPQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIV-PLEEGIKRTVDSYSH 358 (485)
Q Consensus 305 ~~~~~~~p~~~~~~~~~~~~~~~~d~~ka~~~lG~~p~~-~l~e~i~~~~~~~~~ 358 (485)
...+.+ ..+.|.+||++.|||+|+. ++++.+++.++|++.
T Consensus 283 --R~GDpa------------~l~Ad~~kA~~~Lgw~p~~~~L~~ii~~aw~W~~~ 323 (329)
T COG1087 283 --RAGDPA------------ILVADSSKARQILGWQPTYDDLEDIIKDAWDWHQQ 323 (329)
T ss_pred --CCCCCc------------eeEeCHHHHHHHhCCCcccCCHHHHHHHHHHHhhh
Confidence 111222 4567999999999999999 899999999999985
|
|
| >COG1088 RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-49 Score=360.15 Aligned_cols=311 Identities=26% Similarity=0.275 Sum_probs=260.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCC-ceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc--CC
Q 047227 8 RLCVVTGGRGFAARHLVEMLIRYDM-FSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ--GA 84 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~~G~-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--~~ 84 (485)
|++|||||+||||+.++++++++.. ++|+.+|.-.-.. ....+......++..++++|++|.+.+.++++ .+
T Consensus 1 ~~iLVTGGaGFIGsnfvr~~~~~~~d~~v~~~DkLTYAg-----n~~~l~~~~~~~~~~fv~~DI~D~~~v~~~~~~~~~ 75 (340)
T COG1088 1 MKILVTGGAGFIGSNFVRYILNKHPDDHVVNLDKLTYAG-----NLENLADVEDSPRYRFVQGDICDRELVDRLFKEYQP 75 (340)
T ss_pred CcEEEecCcchHHHHHHHHHHhcCCCceEEEEecccccC-----CHHHHHhhhcCCCceEEeccccCHHHHHHHHHhcCC
Confidence 6899999999999999999999854 3577777543211 11124455567899999999999999999998 59
Q ss_pred CEEEEcCC---CCCCCCchhhhHHHHHHHHHHHHHHHHhcCCC-EEEEecCccccccCCCCcCCCCCCCCCCCCCCchHH
Q 047227 85 EVVFHMAA---PNSSINNHKLHHSVNVEGTKNVIDACAELKVK-RLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDFYS 160 (485)
Q Consensus 85 d~Vih~aa---~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~-r~V~~SS~~vy~~~~~~~~~~~e~~~~~~~~~~~Y~ 160 (485)
|+|+|+|| ++.+..+|..+.++|+.||.+||+++++...+ ||+++||..|||+-..+....+|++| ..|.++|+
T Consensus 76 D~VvhfAAESHVDRSI~~P~~Fi~TNv~GT~~LLEaar~~~~~frf~HISTDEVYG~l~~~~~~FtE~tp--~~PsSPYS 153 (340)
T COG1088 76 DAVVHFAAESHVDRSIDGPAPFIQTNVVGTYTLLEAARKYWGKFRFHHISTDEVYGDLGLDDDAFTETTP--YNPSSPYS 153 (340)
T ss_pred CeEEEechhccccccccChhhhhhcchHHHHHHHHHHHHhcccceEEEeccccccccccCCCCCcccCCC--CCCCCCcc
Confidence 99999999 67788899999999999999999999999853 99999999999976555445667765 68999999
Q ss_pred HHHHHHHHHHHHHhCCCCceEEEEecCCcccCCCC--CChHHHHHHHHcCCCeEEecCCCceeecccHHHHHHHHHHHHH
Q 047227 161 ATKAEGEALVIKANGTNGLLTCCIRPSSIFGPGDR--LLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICAER 238 (485)
Q Consensus 161 ~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~--~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~D~a~a~~~~~~ 238 (485)
.||+.+..+++.|.+.+|++++|.|++|-|||... .++|.++..+..|++++++|+|.+.|||+||+|-|+|+..++.
T Consensus 154 ASKAasD~lVray~~TYglp~~ItrcSNNYGPyqfpEKlIP~~I~nal~g~~lpvYGdG~~iRDWl~VeDh~~ai~~Vl~ 233 (340)
T COG1088 154 ASKAASDLLVRAYVRTYGLPATITRCSNNYGPYQFPEKLIPLMIINALLGKPLPVYGDGLQIRDWLYVEDHCRAIDLVLT 233 (340)
T ss_pred hhhhhHHHHHHHHHHHcCCceEEecCCCCcCCCcCchhhhHHHHHHHHcCCCCceecCCcceeeeEEeHhHHHHHHHHHh
Confidence 99999999999999999999999999999999875 6899999999999999999999999999999999999998876
Q ss_pred HhccccchhhccCCcEEEeeCCCCccHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCCCCCCCCHHH
Q 047227 239 ALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELTYRLLGPYGMKVPQLTPSR 318 (485)
Q Consensus 239 ~~~~~~~~~~~~~g~~ynv~~~~~~t~~el~~~i~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 318 (485)
. + ..|++|||+++...+.-|+++.|.+.+|+..+... .+...+. +-|
T Consensus 234 k---g------~~GE~YNIgg~~E~~Nlevv~~i~~~l~~~~~~~~--------------~li~~V~----DRp------ 280 (340)
T COG1088 234 K---G------KIGETYNIGGGNERTNLEVVKTICELLGKDKPDYR--------------DLITFVE----DRP------ 280 (340)
T ss_pred c---C------cCCceEEeCCCccchHHHHHHHHHHHhCccccchh--------------hheEecc----CCC------
Confidence 2 2 45999999999999999999999999998765300 0000000 111
Q ss_pred HHhhccc--eeeehhhHHhhcCCCCCCChHHHHHHHHHHHHHhHhc
Q 047227 319 VRLLSCS--RTFDCSKAKDLLGYMPIVPLEEGIKRTVDSYSHLRAE 362 (485)
Q Consensus 319 ~~~~~~~--~~~d~~ka~~~lG~~p~~~l~e~i~~~~~~~~~~~~~ 362 (485)
.+. +..|.+|++++|||+|..++++|+++|++||.++...
T Consensus 281 ----GHD~RYaid~~Ki~~eLgW~P~~~fe~GlrkTv~WY~~N~~W 322 (340)
T COG1088 281 ----GHDRRYAIDASKIKRELGWRPQETFETGLRKTVDWYLDNEWW 322 (340)
T ss_pred ----CCccceeechHHHhhhcCCCcCCCHHHHHHHHHHHHHhchHH
Confidence 122 3469999999999999999999999999999987654
|
|
| >PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-46 Score=375.84 Aligned_cols=316 Identities=21% Similarity=0.255 Sum_probs=243.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhh--hhcCCCeEEEEecCCCHHHHHHHhcC
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGE--ALRSGRAHYVSFDLRHKAQVLQALQG 83 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~Dl~d~~~l~~~~~~ 83 (485)
.+|+|||||||||||++|+++|+++| ++|++++|........... .... .....+++++.+|++|.+.+.+++++
T Consensus 14 ~~~~vlVtGatGfiG~~lv~~L~~~g-~~V~~~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~Di~d~~~l~~~~~~ 90 (348)
T PRK15181 14 APKRWLITGVAGFIGSGLLEELLFLN-QTVIGLDNFSTGYQHNLDD--VRTSVSEEQWSRFIFIQGDIRKFTDCQKACKN 90 (348)
T ss_pred cCCEEEEECCccHHHHHHHHHHHHCC-CEEEEEeCCCCcchhhhhh--hhhccccccCCceEEEEccCCCHHHHHHHhhC
Confidence 46899999999999999999999999 6999998854321110000 0000 01124688999999999999999999
Q ss_pred CCEEEEcCCCC---CCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCccccccCCCCcCCCCCCCCCCCCCCchHH
Q 047227 84 AEVVFHMAAPN---SSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDFYS 160 (485)
Q Consensus 84 ~d~Vih~aa~~---~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy~~~~~~~~~~~e~~~~~~~~~~~Y~ 160 (485)
+|+|||+|+.. .+..++..++++|+.||.|++++|++.++++|||+||++||+..... +..|+. +..|.++|+
T Consensus 91 ~d~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~v~~SS~~vyg~~~~~--~~~e~~--~~~p~~~Y~ 166 (348)
T PRK15181 91 VDYVLHQAALGSVPRSLKDPIATNSANIDGFLNMLTAARDAHVSSFTYAASSSTYGDHPDL--PKIEER--IGRPLSPYA 166 (348)
T ss_pred CCEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeechHhhCCCCCC--CCCCCC--CCCCCChhh
Confidence 99999999932 34457788899999999999999999999999999999999754322 223332 246778999
Q ss_pred HHHHHHHHHHHHHhCCCCceEEEEecCCcccCCCC------CChHHHHHHHHcCCCeEEecCCCceeecccHHHHHHHHH
Q 047227 161 ATKAEGEALVIKANGTNGLLTCCIRPSSIFGPGDR------LLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHI 234 (485)
Q Consensus 161 ~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~------~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~D~a~a~~ 234 (485)
.+|..+|.+++.+.+.++++++++||+++|||+++ .+++.++..+..|+++.++|+|++.+||+|++|+|++++
T Consensus 167 ~sK~~~e~~~~~~~~~~~~~~~~lR~~~vyGp~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~g~~~rd~i~v~D~a~a~~ 246 (348)
T PRK15181 167 VTKYVNELYADVFARSYEFNAIGLRYFNVFGRRQNPNGAYSAVIPRWILSLLKDEPIYINGDGSTSRDFCYIENVIQANL 246 (348)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEEecceeCcCCCCCCccccCHHHHHHHHHcCCCcEEeCCCCceEeeEEHHHHHHHHH
Confidence 99999999999988888999999999999999753 357888888888999999999999999999999999998
Q ss_pred HHHHHhccccchhhccCCcEEEeeCCCCccHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCCCCCCC
Q 047227 235 CAERALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELTYRLLGPYGMKVPQL 314 (485)
Q Consensus 235 ~~~~~~~~~~~~~~~~~g~~ynv~~~~~~t~~el~~~i~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 314 (485)
.++.... ....+++||+++++++|++|+++.+.+.++.......... + .....
T Consensus 247 ~~~~~~~------~~~~~~~yni~~g~~~s~~e~~~~i~~~~~~~~~~~~~~~------------------~---~~~~~ 299 (348)
T PRK15181 247 LSATTND------LASKNKVYNVAVGDRTSLNELYYLIRDGLNLWRNEQSRAE------------------P---IYKDF 299 (348)
T ss_pred HHHhccc------ccCCCCEEEecCCCcEeHHHHHHHHHHHhCcccccccCCC------------------c---ccCCC
Confidence 8765211 0134789999999999999999999999874321100000 0 00000
Q ss_pred CHHHHHhhccceeeehhhHHhhcCCCCCCChHHHHHHHHHHHHHh
Q 047227 315 TPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSYSHL 359 (485)
Q Consensus 315 ~~~~~~~~~~~~~~d~~ka~~~lG~~p~~~l~e~i~~~~~~~~~~ 359 (485)
.+.. .....+|.+|+++.|||+|+++++|+++++++||+..
T Consensus 300 ~~~~----~~~~~~d~~k~~~~lGw~P~~sl~egl~~~~~w~~~~ 340 (348)
T PRK15181 300 RDGD----VKHSQADITKIKTFLSYEPEFDIKEGLKQTLKWYIDK 340 (348)
T ss_pred CCCc----ccccccCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHh
Confidence 1110 1134579999999999999999999999999999764
|
|
| >PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-44 Score=345.44 Aligned_cols=267 Identities=46% Similarity=0.755 Sum_probs=227.3
Q ss_pred EEEcCCCchHHHHHHHHHhcCC-ceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCCCEEEE
Q 047227 11 VVTGGRGFAARHLVEMLIRYDM-FSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGAEVVFH 89 (485)
Q Consensus 11 LVtGgtG~iG~~l~~~Ll~~G~-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~d~Vih 89 (485)
|||||+||+|+++++.|+++|+ ++|+++++....... ......+..+++.+|++|++++.++++|+|+|||
T Consensus 1 LVTGgsGflG~~iv~~Ll~~g~~~~Vr~~d~~~~~~~~--------~~~~~~~~~~~~~~Di~d~~~l~~a~~g~d~V~H 72 (280)
T PF01073_consen 1 LVTGGSGFLGSHIVRQLLERGYIYEVRVLDRSPPPKFL--------KDLQKSGVKEYIQGDITDPESLEEALEGVDVVFH 72 (280)
T ss_pred CEEcCCcHHHHHHHHHHHHCCCceEEEEcccccccccc--------hhhhcccceeEEEeccccHHHHHHHhcCCceEEE
Confidence 6999999999999999999994 589999876553211 1111123344999999999999999999999999
Q ss_pred cCCCCCC--CCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCccccccC--CCCcCCCCCCCCCCCCCCchHHHHHHH
Q 047227 90 MAAPNSS--INNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVVFDG--VHGIINGNEALPYPPKHNDFYSATKAE 165 (485)
Q Consensus 90 ~aa~~~~--~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy~~~--~~~~~~~~e~~~~~~~~~~~Y~~sK~~ 165 (485)
+|++... ...++.++++|+.||+||+++|++.+++||||+||.+|++++ ..+..+.+|+.|++..+.+.|+.||++
T Consensus 73 ~Aa~~~~~~~~~~~~~~~vNV~GT~nvl~aa~~~~VkrlVytSS~~vv~~~~~~~~~~~~dE~~~~~~~~~~~Y~~SK~~ 152 (280)
T PF01073_consen 73 TAAPVPPWGDYPPEEYYKVNVDGTRNVLEAARKAGVKRLVYTSSISVVFDNYKGDPIINGDEDTPYPSSPLDPYAESKAL 152 (280)
T ss_pred eCccccccCcccHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcCcceeEeccCCCCcccCCcCCcccccccCchHHHHHH
Confidence 9994332 346778999999999999999999999999999999999862 234556788888888899999999999
Q ss_pred HHHHHHHHhC---CC--CceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCceeecccHHHHHHHHHHHHHHh
Q 047227 166 GEALVIKANG---TN--GLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICAERAL 240 (485)
Q Consensus 166 ~E~~~~~~~~---~~--g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~D~a~a~~~~~~~~ 240 (485)
||++++++.. +. .+.+|+|||+.||||++..+.+.+...++.|......|+++...+++||+|+|++++++++++
T Consensus 153 AE~~V~~a~~~~~~~g~~l~t~~lRP~~IyGp~d~~~~~~~~~~~~~g~~~~~~g~~~~~~~~vyV~NvA~ahvlA~~~L 232 (280)
T PF01073_consen 153 AEKAVLEANGSELKNGGRLRTCALRPAGIYGPGDQRLVPRLVKMVRSGLFLFQIGDGNNLFDFVYVENVAHAHVLAAQAL 232 (280)
T ss_pred HHHHHHhhcccccccccceeEEEEeccEEeCcccccccchhhHHHHhcccceeecCCCceECcEeHHHHHHHHHHHHHHh
Confidence 9999999876 22 499999999999999998888889988999988888999999999999999999999999987
Q ss_pred ccccchhhccCCcEEEeeCCCCcc-HHHHHHHHHHHcCCCCCC-ccCC
Q 047227 241 ASEVTVAEKAAGQAYFVTNMESIK-FWEFVSLILEGLGYQRPR-IKIP 286 (485)
Q Consensus 241 ~~~~~~~~~~~g~~ynv~~~~~~t-~~el~~~i~~~~g~~~~~-~~~p 286 (485)
.+.+. .+...|++|+|++++|++ ++||.+.+.+.+|++.+. +.+|
T Consensus 233 ~~~~~-~~~~~G~~y~itd~~p~~~~~~f~~~~~~~~G~~~~~~~~lp 279 (280)
T PF01073_consen 233 LEPGK-PERVAGQAYFITDGEPVPSFWDFMRPLWEALGYPPPKSISLP 279 (280)
T ss_pred ccccc-cccCCCcEEEEECCCccCcHHHHHHHHHHHCCCCCCcccCCC
Confidence 65311 345789999999999999 999999999999999887 5554
|
3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process |
| >PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-42 Score=347.19 Aligned_cols=320 Identities=18% Similarity=0.243 Sum_probs=241.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhc-CCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCC-CHHHHHHHhcCC
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRY-DMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLR-HKAQVLQALQGA 84 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~-G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~-d~~~l~~~~~~~ 84 (485)
||+|||||||||||++|++.|+++ | ++|++++|.... .......++++++.+|++ +.+.+.++++++
T Consensus 1 m~~ilVtGatGfiGs~l~~~L~~~~~-~~V~~~~r~~~~----------~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 69 (347)
T PRK11908 1 MKKVLILGVNGFIGHHLSKRILETTD-WEVYGMDMQTDR----------LGDLVNHPRMHFFEGDITINKEWIEYHVKKC 69 (347)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhCCC-CeEEEEeCcHHH----------HHHhccCCCeEEEeCCCCCCHHHHHHHHcCC
Confidence 378999999999999999999987 6 689999875421 111122356899999998 777888899999
Q ss_pred CEEEEcCCCC---CCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCccccccCCCCcCCCCCCCCC---C-CCCCc
Q 047227 85 EVVFHMAAPN---SSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVVFDGVHGIINGNEALPY---P-PKHND 157 (485)
Q Consensus 85 d~Vih~aa~~---~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy~~~~~~~~~~~e~~~~---~-~~~~~ 157 (485)
|+|||+|+.. ....++...+++|+.++.+++++|++.+ +||||+||+++||+.......++ ..+. | ..|.+
T Consensus 70 d~ViH~aa~~~~~~~~~~p~~~~~~n~~~~~~ll~aa~~~~-~~~v~~SS~~vyg~~~~~~~~ee-~~~~~~~~~~~p~~ 147 (347)
T PRK11908 70 DVILPLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYG-KHLVFPSTSEVYGMCPDEEFDPE-ASPLVYGPINKPRW 147 (347)
T ss_pred CEEEECcccCChHHhhcCcHHHHHHHHHHHHHHHHHHHhcC-CeEEEEecceeeccCCCcCcCcc-ccccccCcCCCccc
Confidence 9999999832 3356788889999999999999999988 79999999999975443322222 2111 1 24677
Q ss_pred hHHHHHHHHHHHHHHHhCCCCceEEEEecCCcccCCCC----------CChHHHHHHHHcCCCeEEecCCCceeecccHH
Q 047227 158 FYSATKAEGEALVIKANGTNGLLTCCIRPSSIFGPGDR----------LLVPSLVAAARAGKSKFIIGDGNNVYDFTYVA 227 (485)
Q Consensus 158 ~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~----------~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~ 227 (485)
.|+.+|..+|++++.++.+++++++++||+++|||+.. .+++.++..+..|+++.+.++|++.++|+|++
T Consensus 148 ~Y~~sK~~~e~~~~~~~~~~~~~~~ilR~~~v~Gp~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~r~~i~v~ 227 (347)
T PRK11908 148 IYACSKQLMDRVIWAYGMEEGLNFTLFRPFNWIGPGLDSIYTPKEGSSRVVTQFLGHIVRGEPISLVDGGSQKRAFTDID 227 (347)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCeEEEeeeeeeCCCccCCCccccCCcchHHHHHHHHhCCCceEEecCCceeeccccHH
Confidence 99999999999999998888999999999999999742 35677888888999988889999999999999
Q ss_pred HHHHHHHHHHHHhccccchhhccCCcEEEeeCC-CCccHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhCC
Q 047227 228 NVAHAHICAERALASEVTVAEKAAGQAYFVTNM-ESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELTYRLLGP 306 (485)
Q Consensus 228 D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~-~~~t~~el~~~i~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 306 (485)
|+|++++.+++.... ...|++||++++ ..+|+.|+++.|.+.+|..+.....+..+ + ..
T Consensus 228 D~a~a~~~~~~~~~~------~~~g~~yni~~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~--------~----~~-- 287 (347)
T PRK11908 228 DGIDALMKIIENKDG------VASGKIYNIGNPKNNHSVRELANKMLELAAEYPEYAESAKKV--------K----LV-- 287 (347)
T ss_pred HHHHHHHHHHhCccc------cCCCCeEEeCCCCCCcCHHHHHHHHHHHhcCccccccccccc--------c----cc--
Confidence 999999998773111 134789999997 48999999999999998643321100000 0 00
Q ss_pred CCCCCCCCCHHHHH-hhccceeeehhhHHhhcCCCCCCChHHHHHHHHHHHHHhHhc
Q 047227 307 YGMKVPQLTPSRVR-LLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSYSHLRAE 362 (485)
Q Consensus 307 ~~~~~p~~~~~~~~-~~~~~~~~d~~ka~~~lG~~p~~~l~e~i~~~~~~~~~~~~~ 362 (485)
..+........ .....+..|++|+++.|||+|+++++|+++++++|+++....
T Consensus 288 ---~~~~~~~~~~~~~~~~~~~~d~~k~~~~lGw~p~~~l~~~l~~~~~~~~~~~~~ 341 (347)
T PRK11908 288 ---ETTSGAYYGKGYQDVQNRVPKIDNTMQELGWAPKTTMDDALRRIFEAYRGHVAE 341 (347)
T ss_pred ---cCCchhccCcCcchhccccCChHHHHHHcCCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 00000000000 001123458999999999999999999999999999876554
|
|
| >PLN02166 dTDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-42 Score=354.79 Aligned_cols=301 Identities=23% Similarity=0.289 Sum_probs=238.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCCC
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGAE 85 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~d 85 (485)
+.|||||||||||||++|++.|+++| ++|++++|...... .. .......++++++.+|+.+. .+.++|
T Consensus 119 ~~mkILVTGatGFIGs~Lv~~Ll~~G-~~V~~ldr~~~~~~---~~---~~~~~~~~~~~~~~~Di~~~-----~~~~~D 186 (436)
T PLN02166 119 KRLRIVVTGGAGFVGSHLVDKLIGRG-DEVIVIDNFFTGRK---EN---LVHLFGNPRFELIRHDVVEP-----ILLEVD 186 (436)
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCC-CEEEEEeCCCCccH---hH---hhhhccCCceEEEECccccc-----cccCCC
Confidence 45899999999999999999999999 59999987532110 00 11111234688999998775 346899
Q ss_pred EEEEcCCCC---CCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCccccccCCCCcCCCCCCC---CCCCCCCchH
Q 047227 86 VVFHMAAPN---SSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVVFDGVHGIINGNEAL---PYPPKHNDFY 159 (485)
Q Consensus 86 ~Vih~aa~~---~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy~~~~~~~~~~~e~~---~~~~~~~~~Y 159 (485)
+|||+|+.. ....++..++++|+.++.+++++|++.++ +|||+||.+||++.... +.+|+. ..|..|.+.|
T Consensus 187 ~ViHlAa~~~~~~~~~~p~~~~~~Nv~gT~nLleaa~~~g~-r~V~~SS~~VYg~~~~~--p~~E~~~~~~~p~~p~s~Y 263 (436)
T PLN02166 187 QIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLEH--PQKETYWGNVNPIGERSCY 263 (436)
T ss_pred EEEECceeccchhhccCHHHHHHHHHHHHHHHHHHHHHhCC-EEEEECcHHHhCCCCCC--CCCccccccCCCCCCCCch
Confidence 999999932 33457888999999999999999999986 89999999999754322 233332 1245677899
Q ss_pred HHHHHHHHHHHHHHhCCCCceEEEEecCCcccCCCC----CChHHHHHHHHcCCCeEEecCCCceeecccHHHHHHHHHH
Q 047227 160 SATKAEGEALVIKANGTNGLLTCCIRPSSIFGPGDR----LLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHIC 235 (485)
Q Consensus 160 ~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~----~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~D~a~a~~~ 235 (485)
+.+|..+|++++.+++.++++++++||+++|||++. ..++.++..+..++++.++|++++.++|+|++|+|+++..
T Consensus 264 g~SK~~aE~~~~~y~~~~~l~~~ilR~~~vYGp~~~~~~~~~i~~~i~~~l~~~~i~v~g~g~~~rdfi~V~Dva~ai~~ 343 (436)
T PLN02166 264 DEGKRTAETLAMDYHRGAGVEVRIARIFNTYGPRMCLDDGRVVSNFVAQTIRKQPMTVYGDGKQTRSFQYVSDLVDGLVA 343 (436)
T ss_pred HHHHHHHHHHHHHHHHHhCCCeEEEEEccccCCCCCCCccchHHHHHHHHhcCCCcEEeCCCCeEEeeEEHHHHHHHHHH
Confidence 999999999999998888999999999999999853 4577888888899999999999999999999999999998
Q ss_pred HHHHhccccchhhccCCcEEEeeCCCCccHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCCCCCCCC
Q 047227 236 AERALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELTYRLLGPYGMKVPQLT 315 (485)
Q Consensus 236 ~~~~~~~~~~~~~~~~g~~ynv~~~~~~t~~el~~~i~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 315 (485)
+++. ..+++||+++++.+|+.|+++.+.+.+|.+......|.. +
T Consensus 344 ~~~~----------~~~giyNIgs~~~~Si~ela~~I~~~~g~~~~i~~~p~~-----------------------~--- 387 (436)
T PLN02166 344 LMEG----------EHVGPFNLGNPGEFTMLELAEVVKETIDSSATIEFKPNT-----------------------A--- 387 (436)
T ss_pred HHhc----------CCCceEEeCCCCcEeHHHHHHHHHHHhCCCCCeeeCCCC-----------------------C---
Confidence 8752 224699999999999999999999999876443222110 0
Q ss_pred HHHHHhhccceeeehhhHHhhcCCCCCCChHHHHHHHHHHHHHhHhc
Q 047227 316 PSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSYSHLRAE 362 (485)
Q Consensus 316 ~~~~~~~~~~~~~d~~ka~~~lG~~p~~~l~e~i~~~~~~~~~~~~~ 362 (485)
. .......|++|++++|||+|+++++++++++++||++...+
T Consensus 388 -~----~~~~~~~d~~Ka~~~LGw~P~~sl~egl~~~i~~~~~~~~~ 429 (436)
T PLN02166 388 -D----DPHKRKPDISKAKELLNWEPKISLREGLPLMVSDFRNRILN 429 (436)
T ss_pred -C----CccccccCHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHhcC
Confidence 0 01234569999999999999999999999999999875544
|
|
| >PLN02427 UDP-apiose/xylose synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-42 Score=349.49 Aligned_cols=321 Identities=19% Similarity=0.201 Sum_probs=237.2
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCC
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGA 84 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 84 (485)
.+.|+|||||||||||++|++.|+++|.++|++++|........ .. .......++++++.+|++|.+.+.++++++
T Consensus 12 ~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~~l-~~---~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~ 87 (386)
T PLN02427 12 IKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYNDKIKHL-LE---PDTVPWSGRIQFHRINIKHDSRLEGLIKMA 87 (386)
T ss_pred ccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEecCchhhhhh-hc---cccccCCCCeEEEEcCCCChHHHHHHhhcC
Confidence 35689999999999999999999998436899998764311000 00 000001246999999999999999999999
Q ss_pred CEEEEcCCCC---CCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCccccccCCCCcCCCC-------------CC
Q 047227 85 EVVFHMAAPN---SSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVVFDGVHGIINGN-------------EA 148 (485)
Q Consensus 85 d~Vih~aa~~---~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy~~~~~~~~~~~-------------e~ 148 (485)
|+|||+|+.. ....++...+..|+.++.+++++|++.+ +||||+||.++||.......+++ |+
T Consensus 88 d~ViHlAa~~~~~~~~~~~~~~~~~n~~gt~~ll~aa~~~~-~r~v~~SS~~vYg~~~~~~~~e~~p~~~~~~~~~~~e~ 166 (386)
T PLN02427 88 DLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENN-KRLIHFSTCEVYGKTIGSFLPKDHPLRQDPAFYVLKED 166 (386)
T ss_pred CEEEEcccccChhhhhhChHHHHHHHHHHHHHHHHHHHhcC-CEEEEEeeeeeeCCCcCCCCCccccccccccccccccc
Confidence 9999999932 2334556677899999999999999987 89999999999975322111111 10
Q ss_pred -CCC----CCCCCchHHHHHHHHHHHHHHHhCCCCceEEEEecCCcccCCCC-------------CChHHHHHHHHcCCC
Q 047227 149 -LPY----PPKHNDFYSATKAEGEALVIKANGTNGLLTCCIRPSSIFGPGDR-------------LLVPSLVAAARAGKS 210 (485)
Q Consensus 149 -~~~----~~~~~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~-------------~~~~~~~~~~~~g~~ 210 (485)
.+. ...+.+.|+.+|..+|++++.+++.++++++++||+++|||+.. .+++.++..+..+++
T Consensus 167 ~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilR~~~vyGp~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 246 (386)
T PLN02427 167 ESPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRREP 246 (386)
T ss_pred ccccccCCCCccccchHHHHHHHHHHHHHHHhhcCCceEEecccceeCCCCCccccccccccccchHHHHHHHHHhcCCC
Confidence 010 01345689999999999999988888999999999999999742 134455667778999
Q ss_pred eEEecCCCceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCC-CCccHHHHHHHHHHHcCCCCCC-------
Q 047227 211 KFIIGDGNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNM-ESIKFWEFVSLILEGLGYQRPR------- 282 (485)
Q Consensus 211 ~~~~g~g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~-~~~t~~el~~~i~~~~g~~~~~------- 282 (485)
+.++|++++.++|+||+|+|++++.+++.. ....|++||++++ +++++.|+++.+.+.+|.....
T Consensus 247 ~~~~g~g~~~r~~i~V~Dva~ai~~al~~~-------~~~~g~~yni~~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~ 319 (386)
T PLN02427 247 LKLVDGGQSQRTFVYIKDAIEAVLLMIENP-------ARANGHIFNVGNPNNEVTVRQLAEMMTEVYAKVSGEPALEEPT 319 (386)
T ss_pred eEEECCCCceECcEeHHHHHHHHHHHHhCc-------ccccCceEEeCCCCCCccHHHHHHHHHHHhccccccccccccc
Confidence 999999999999999999999999987631 1134689999997 6999999999999998852110
Q ss_pred ccCCHHHHHHHHHHHHHHHHHhCCCCCCCCCCCHHHHHhhccceeeehhhHHhhcCCCCCCChHHHHHHHHHHHHHhHhc
Q 047227 283 IKIPAFVMMPIAHMVELTYRLLGPYGMKVPQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSYSHLRAE 362 (485)
Q Consensus 283 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~d~~ka~~~lG~~p~~~l~e~i~~~~~~~~~~~~~ 362 (485)
+..+. .+...+.. .....+..|.+|++++|||+|+++++++|+++++|++....+
T Consensus 320 ~~~~~-----------------------~~~~~~~~--~~~~~~~~d~~k~~~~lGw~p~~~l~~gl~~~~~~~~~~~~~ 374 (386)
T PLN02427 320 VDVSS-----------------------KEFYGEGY--DDSDKRIPDMTIINKQLGWNPKTSLWDLLESTLTYQHKTYAE 374 (386)
T ss_pred cccCc-----------------------ccccCccc--cchhhccCCHHHHHHhcCCCcCccHHHHHHHHHHHHHHHHHH
Confidence 01110 00000000 001233569999999999999999999999999999887654
|
|
| >PLN02695 GDP-D-mannose-3',5'-epimerase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-42 Score=345.64 Aligned_cols=303 Identities=20% Similarity=0.234 Sum_probs=239.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCCC
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGAE 85 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~d 85 (485)
++|+|||||||||||+++++.|.++| ++|++++|........ ....++++.+|++|.+.+.++++++|
T Consensus 20 ~~~~IlVtGgtGfIG~~l~~~L~~~G-~~V~~v~r~~~~~~~~-----------~~~~~~~~~~Dl~d~~~~~~~~~~~D 87 (370)
T PLN02695 20 EKLRICITGAGGFIASHIARRLKAEG-HYIIASDWKKNEHMSE-----------DMFCHEFHLVDLRVMENCLKVTKGVD 87 (370)
T ss_pred CCCEEEEECCccHHHHHHHHHHHhCC-CEEEEEEecccccccc-----------ccccceEEECCCCCHHHHHHHHhCCC
Confidence 46899999999999999999999999 5999998864311100 01135788999999999999999999
Q ss_pred EEEEcCCCCC----CCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCccccccCCCC--cCCCCCCCCCCCCCCchH
Q 047227 86 VVFHMAAPNS----SINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVVFDGVHG--IINGNEALPYPPKHNDFY 159 (485)
Q Consensus 86 ~Vih~aa~~~----~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy~~~~~~--~~~~~e~~~~~~~~~~~Y 159 (485)
+|||+|+... ...++......|+.++.+++++|++.++++|||+||.++|++.... ..+..|+.+.|..|.+.|
T Consensus 88 ~Vih~Aa~~~~~~~~~~~~~~~~~~N~~~t~nll~aa~~~~vk~~V~~SS~~vYg~~~~~~~~~~~~E~~~~p~~p~s~Y 167 (370)
T PLN02695 88 HVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEAARINGVKRFFYASSACIYPEFKQLETNVSLKESDAWPAEPQDAY 167 (370)
T ss_pred EEEEcccccCCccccccCchhhHHHHHHHHHHHHHHHHHhCCCEEEEeCchhhcCCccccCcCCCcCcccCCCCCCCCHH
Confidence 9999998321 2234556678999999999999999999999999999999754321 112334333356788999
Q ss_pred HHHHHHHHHHHHHHhCCCCceEEEEecCCcccCCCC------CChHHHHHHHHc-CCCeEEecCCCceeecccHHHHHHH
Q 047227 160 SATKAEGEALVIKANGTNGLLTCCIRPSSIFGPGDR------LLVPSLVAAARA-GKSKFIIGDGNNVYDFTYVANVAHA 232 (485)
Q Consensus 160 ~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~------~~~~~~~~~~~~-g~~~~~~g~g~~~~~~i~v~D~a~a 232 (485)
+.+|..+|++++.++++++++++++||+++|||+.. ...+.++..+.. ++++.++|+|++.++|+|++|++++
T Consensus 168 g~sK~~~E~~~~~~~~~~g~~~~ilR~~~vyGp~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~g~~~r~~i~v~D~a~a 247 (370)
T PLN02695 168 GLEKLATEELCKHYTKDFGIECRIGRFHNIYGPFGTWKGGREKAPAAFCRKALTSTDEFEMWGDGKQTRSFTFIDECVEG 247 (370)
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEEECCccCCCCCccccccccHHHHHHHHHcCCCCeEEeCCCCeEEeEEeHHHHHHH
Confidence 999999999999988888999999999999999753 134566665544 5778889999999999999999999
Q ss_pred HHHHHHHhccccchhhccCCcEEEeeCCCCccHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCCCCC
Q 047227 233 HICAERALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELTYRLLGPYGMKVP 312 (485)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~~t~~el~~~i~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p 312 (485)
++.+++. ..+++||+++++++++.|+++.+.+..|.+.+....|. +
T Consensus 248 i~~~~~~----------~~~~~~nv~~~~~~s~~el~~~i~~~~g~~~~i~~~~~------------------------~ 293 (370)
T PLN02695 248 VLRLTKS----------DFREPVNIGSDEMVSMNEMAEIALSFENKKLPIKHIPG------------------------P 293 (370)
T ss_pred HHHHHhc----------cCCCceEecCCCceeHHHHHHHHHHHhCCCCCceecCC------------------------C
Confidence 9987652 23578999999999999999999999987554332221 0
Q ss_pred CCCHHHHHhhccceeeehhhHHhhcCCCCCCChHHHHHHHHHHHHHhHhc
Q 047227 313 QLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSYSHLRAE 362 (485)
Q Consensus 313 ~~~~~~~~~~~~~~~~d~~ka~~~lG~~p~~~l~e~i~~~~~~~~~~~~~ 362 (485)
.-. .....|++|+++.|||+|.++++++++++++||++....
T Consensus 294 ~~~--------~~~~~d~sk~~~~lgw~p~~~l~e~i~~~~~~~~~~~~~ 335 (370)
T PLN02695 294 EGV--------RGRNSDNTLIKEKLGWAPTMRLKDGLRITYFWIKEQIEK 335 (370)
T ss_pred CCc--------cccccCHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 000 012469999999999999999999999999999886543
|
|
| >PLN02206 UDP-glucuronate decarboxylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-42 Score=352.91 Aligned_cols=300 Identities=22% Similarity=0.270 Sum_probs=236.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCCC
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGAE 85 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~d 85 (485)
++|||||||||||||++|++.|+++| ++|+++++..... .+. .......++++++.+|+.++ ++.++|
T Consensus 118 ~~~kILVTGatGfIGs~Lv~~Ll~~G-~~V~~ld~~~~~~---~~~---~~~~~~~~~~~~i~~D~~~~-----~l~~~D 185 (442)
T PLN02206 118 KGLRVVVTGGAGFVGSHLVDRLMARG-DSVIVVDNFFTGR---KEN---VMHHFSNPNFELIRHDVVEP-----ILLEVD 185 (442)
T ss_pred CCCEEEEECcccHHHHHHHHHHHHCc-CEEEEEeCCCccc---hhh---hhhhccCCceEEEECCccCh-----hhcCCC
Confidence 56899999999999999999999999 5899887643210 010 11122345789999999875 346799
Q ss_pred EEEEcCCCC---CCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCccccccCCCCcCCCCCCC---CCCCCCCchH
Q 047227 86 VVFHMAAPN---SSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVVFDGVHGIINGNEAL---PYPPKHNDFY 159 (485)
Q Consensus 86 ~Vih~aa~~---~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy~~~~~~~~~~~e~~---~~~~~~~~~Y 159 (485)
+|||+|+.. ....++..++++|+.++.+++++|++.++ ||||+||..+|++.... +.+|+. ..|..+.+.|
T Consensus 186 ~ViHlAa~~~~~~~~~~p~~~~~~Nv~gt~nLleaa~~~g~-r~V~~SS~~VYg~~~~~--p~~E~~~~~~~P~~~~s~Y 262 (442)
T PLN02206 186 QIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQH--PQVETYWGNVNPIGVRSCY 262 (442)
T ss_pred EEEEeeeecchhhhhcCHHHHHHHHHHHHHHHHHHHHHhCC-EEEEECChHHhCCCCCC--CCCccccccCCCCCccchH
Confidence 999999932 33457888999999999999999999996 89999999999754322 233332 1244567899
Q ss_pred HHHHHHHHHHHHHHhCCCCceEEEEecCCcccCCC----CCChHHHHHHHHcCCCeEEecCCCceeecccHHHHHHHHHH
Q 047227 160 SATKAEGEALVIKANGTNGLLTCCIRPSSIFGPGD----RLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHIC 235 (485)
Q Consensus 160 ~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~----~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~D~a~a~~~ 235 (485)
+.+|..+|+++..+.+.++++++++||+++|||+. ...++.++..+..++++.++|+|++.++|+|++|+|++++.
T Consensus 263 ~~SK~~aE~~~~~y~~~~g~~~~ilR~~~vyGp~~~~~~~~~v~~~i~~~l~~~~i~i~g~G~~~rdfi~V~Dva~ai~~ 342 (442)
T PLN02206 263 DEGKRTAETLTMDYHRGANVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMR 342 (442)
T ss_pred HHHHHHHHHHHHHHHHHhCCCeEEEEeccccCCCCCccccchHHHHHHHHHcCCCcEEeCCCCEEEeEEeHHHHHHHHHH
Confidence 99999999999998877899999999999999973 24577888888888999999999999999999999999998
Q ss_pred HHHHhccccchhhccCCcEEEeeCCCCccHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCCCCCCCC
Q 047227 236 AERALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELTYRLLGPYGMKVPQLT 315 (485)
Q Consensus 236 ~~~~~~~~~~~~~~~~g~~ynv~~~~~~t~~el~~~i~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 315 (485)
+++. ..++.||+++++.+++.|+++.+.+.+|.+......|.. ...
T Consensus 343 a~e~----------~~~g~yNIgs~~~~sl~Elae~i~~~~g~~~~i~~~p~~--------------------~~~---- 388 (442)
T PLN02206 343 LMEG----------EHVGPFNLGNPGEFTMLELAKVVQETIDPNAKIEFRPNT--------------------EDD---- 388 (442)
T ss_pred HHhc----------CCCceEEEcCCCceeHHHHHHHHHHHhCCCCceeeCCCC--------------------CCC----
Confidence 8762 234589999999999999999999999865432221110 000
Q ss_pred HHHHHhhccceeeehhhHHhhcCCCCCCChHHHHHHHHHHHHHhHh
Q 047227 316 PSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSYSHLRA 361 (485)
Q Consensus 316 ~~~~~~~~~~~~~d~~ka~~~lG~~p~~~l~e~i~~~~~~~~~~~~ 361 (485)
.....+|++|+++++||+|+++++|+++++++||++...
T Consensus 389 -------~~~~~~d~sKa~~~LGw~P~~~l~egl~~~~~~~~~~~~ 427 (442)
T PLN02206 389 -------PHKRKPDITKAKELLGWEPKVSLRQGLPLMVKDFRQRVF 427 (442)
T ss_pred -------ccccccCHHHHHHHcCCCCCCCHHHHHHHHHHHHHHhhh
Confidence 112357999999999999999999999999999977543
|
|
| >PRK10217 dTDP-glucose 4,6-dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-42 Score=345.08 Aligned_cols=320 Identities=25% Similarity=0.291 Sum_probs=242.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcC--C
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQG--A 84 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~--~ 84 (485)
||+|||||||||||+++++.|+++|+..|.+.++...... . .. +.......+++++.+|++|++++.+++++ +
T Consensus 1 ~~~vlVtGatGfIG~~l~~~L~~~g~~~v~~~~~~~~~~~-~-~~---~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 75 (355)
T PRK10217 1 MRKILITGGAGFIGSALVRYIINETSDAVVVVDKLTYAGN-L-MS---LAPVAQSERFAFEKVDICDRAELARVFTEHQP 75 (355)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHHcCCCEEEEEecCccccc-h-hh---hhhcccCCceEEEECCCcChHHHHHHHhhcCC
Confidence 3689999999999999999999999544555555322110 0 00 11111124678899999999999999984 9
Q ss_pred CEEEEcCCCCC---CCCchhhhHHHHHHHHHHHHHHHHhc---------CCCEEEEecCccccccCCCCcCCCCCCCCCC
Q 047227 85 EVVFHMAAPNS---SINNHKLHHSVNVEGTKNVIDACAEL---------KVKRLIYTSSPSVVFDGVHGIINGNEALPYP 152 (485)
Q Consensus 85 d~Vih~aa~~~---~~~~~~~~~~~nv~~t~~ll~a~~~~---------~v~r~V~~SS~~vy~~~~~~~~~~~e~~~~~ 152 (485)
|+|||+||... +..++..++++|+.++.+++++|++. ++++|||+||.++|+.......+.+|+.+
T Consensus 76 D~Vih~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~a~~~~~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~~~~E~~~-- 153 (355)
T PRK10217 76 DCVMHLAAESHVDRSIDGPAAFIETNIVGTYTLLEAARAYWNALTEDKKSAFRFHHISTDEVYGDLHSTDDFFTETTP-- 153 (355)
T ss_pred CEEEECCcccCcchhhhChHHHHHHhhHHHHHHHHHHHHhhhcccccccCceEEEEecchhhcCCCCCCCCCcCCCCC--
Confidence 99999999432 33467889999999999999999873 47899999999999754332233455443
Q ss_pred CCCCchHHHHHHHHHHHHHHHhCCCCceEEEEecCCcccCCCC--CChHHHHHHHHcCCCeEEecCCCceeecccHHHHH
Q 047227 153 PKHNDFYSATKAEGEALVIKANGTNGLLTCCIRPSSIFGPGDR--LLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVA 230 (485)
Q Consensus 153 ~~~~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~--~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~D~a 230 (485)
..|.+.|+.||..+|.+++.++++++++++++||+++|||++. .+++.++..+..++++.++|+|++.++|+|++|+|
T Consensus 154 ~~p~s~Y~~sK~~~e~~~~~~~~~~~~~~~i~r~~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~i~v~D~a 233 (355)
T PRK10217 154 YAPSSPYSASKASSDHLVRAWLRTYGLPTLITNCSNNYGPYHFPEKLIPLMILNALAGKPLPVYGNGQQIRDWLYVEDHA 233 (355)
T ss_pred CCCCChhHHHHHHHHHHHHHHHHHhCCCeEEEeeeeeeCCCCCcccHHHHHHHHHhcCCCceEeCCCCeeeCcCcHHHHH
Confidence 4678899999999999999998888999999999999999863 46777878888888888899999999999999999
Q ss_pred HHHHHHHHHhccccchhhccCCcEEEeeCCCCccHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCCC
Q 047227 231 HAHICAERALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELTYRLLGPYGMK 310 (485)
Q Consensus 231 ~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~~t~~el~~~i~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 310 (485)
++++.+++. + ..+++||++++++++++|+++.+.+.+|...+....+.... ....... + .
T Consensus 234 ~a~~~~~~~---~------~~~~~yni~~~~~~s~~~~~~~i~~~~~~~~~~~~~~~~~~-------~~~~~~~-~---~ 293 (355)
T PRK10217 234 RALYCVATT---G------KVGETYNIGGHNERKNLDVVETICELLEELAPNKPQGVAHY-------RDLITFV-A---D 293 (355)
T ss_pred HHHHHHHhc---C------CCCCeEEeCCCCcccHHHHHHHHHHHhcccccccccccccc-------cccceec-C---C
Confidence 999988763 1 34689999999999999999999999986443222111000 0000000 0 0
Q ss_pred CCCCCHHHHHhhccceeeehhhHHhhcCCCCCCChHHHHHHHHHHHHHhHh
Q 047227 311 VPQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSYSHLRA 361 (485)
Q Consensus 311 ~p~~~~~~~~~~~~~~~~d~~ka~~~lG~~p~~~l~e~i~~~~~~~~~~~~ 361 (485)
.|. . .....+|++|++++|||+|.++++|+++++++||+....
T Consensus 294 ~~~----~----~~~~~~d~~k~~~~lg~~p~~~l~e~l~~~~~~~~~~~~ 336 (355)
T PRK10217 294 RPG----H----DLRYAIDASKIARELGWLPQETFESGMRKTVQWYLANES 336 (355)
T ss_pred CCC----C----CcccccCHHHHHHhcCCCCcCcHHHHHHHHHHHHHhCHH
Confidence 010 0 112357999999999999999999999999999988654
|
|
| >PLN02572 UDP-sulfoquinovose synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-42 Score=352.66 Aligned_cols=317 Identities=17% Similarity=0.209 Sum_probs=235.9
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCc---cc-------hhhhhhh--hcCCCeEEEEecCC
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPH---EE-------QGILGEA--LRSGRAHYVSFDLR 72 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~---~~-------~~~~~~~--~~~~~v~~~~~Dl~ 72 (485)
.++|+||||||+||||++|++.|+++| ++|+++++......... .. ...+... ....+++++.+|++
T Consensus 45 ~~~k~VLVTGatGfIGs~Lv~~L~~~G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~Dl~ 123 (442)
T PLN02572 45 SKKKKVMVIGGDGYCGWATALHLSKRG-YEVAIVDNLCRRLFDHQLGLDSLTPIASIHERVRRWKEVSGKEIELYVGDIC 123 (442)
T ss_pred ccCCEEEEECCCcHHHHHHHHHHHHCC-CeEEEEeccccccccccccccccccccchHHHHHHHHHhhCCcceEEECCCC
Confidence 467899999999999999999999999 69999875422111000 00 0001000 11246899999999
Q ss_pred CHHHHHHHhc--CCCEEEEcCCCCC---CCC---chhhhHHHHHHHHHHHHHHHHhcCCC-EEEEecCccccccCCCCc-
Q 047227 73 HKAQVLQALQ--GAEVVFHMAAPNS---SIN---NHKLHHSVNVEGTKNVIDACAELKVK-RLIYTSSPSVVFDGVHGI- 142 (485)
Q Consensus 73 d~~~l~~~~~--~~d~Vih~aa~~~---~~~---~~~~~~~~nv~~t~~ll~a~~~~~v~-r~V~~SS~~vy~~~~~~~- 142 (485)
|++.+.++++ ++|+|||+|+... +.. ++...+++|+.|+.+++++|++.+++ +|||+||.++||....+.
T Consensus 124 d~~~v~~~l~~~~~D~ViHlAa~~~~~~~~~~~~~~~~~~~~Nv~gt~nlleaa~~~gv~~~~V~~SS~~vYG~~~~~~~ 203 (442)
T PLN02572 124 DFEFLSEAFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAIKEFAPDCHLVKLGTMGEYGTPNIDIE 203 (442)
T ss_pred CHHHHHHHHHhCCCCEEEECCCcccChhhhcChhhHHHHHHHHHHHHHHHHHHHHHhCCCccEEEEecceecCCCCCCCc
Confidence 9999999997 4899999997321 111 23456789999999999999999985 999999999997532111
Q ss_pred ---CCC-----CCCCCCCCCCCchHHHHHHHHHHHHHHHhCCCCceEEEEecCCcccCCCC-------------------
Q 047227 143 ---ING-----NEALPYPPKHNDFYSATKAEGEALVIKANGTNGLLTCCIRPSSIFGPGDR------------------- 195 (485)
Q Consensus 143 ---~~~-----~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~------------------- 195 (485)
.++ +++.+.+..|.++|+.+|..+|.+++.+++.+|++++++||+++|||++.
T Consensus 204 E~~i~~~~~~~e~~~~~~~~P~s~Yg~SK~a~E~l~~~~~~~~gl~~v~lR~~~vyGp~~~~~~~~~~li~~~~~~~~~~ 283 (442)
T PLN02572 204 EGYITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETMMDEELINRLDYDGVFG 283 (442)
T ss_pred ccccccccccccccccCCCCCCCcchhHHHHHHHHHHHHHHhcCCCEEEEecccccCCCCcccccccccccccCcccchh
Confidence 111 12222356788999999999999999999889999999999999999753
Q ss_pred CChHHHHHHHHcCCCeEEecCCCceeecccHHHHHHHHHHHHHHhccccchhhccCC--cEEEeeCCCCccHHHHHHHHH
Q 047227 196 LLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICAERALASEVTVAEKAAG--QAYFVTNMESIKFWEFVSLIL 273 (485)
Q Consensus 196 ~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g--~~ynv~~~~~~t~~el~~~i~ 273 (485)
..++.++..+..|+++.++|+|++.+||+||+|+|++++.+++.. ...| .+||+++ +.+++.|+++.+.
T Consensus 284 ~~i~~~~~~~~~g~~i~v~g~G~~~Rdfi~V~Dva~a~~~al~~~--------~~~g~~~i~Nigs-~~~si~el~~~i~ 354 (442)
T PLN02572 284 TALNRFCVQAAVGHPLTVYGKGGQTRGFLDIRDTVRCIEIAIANP--------AKPGEFRVFNQFT-EQFSVNELAKLVT 354 (442)
T ss_pred hHHHHHHHHHhcCCCceecCCCCEEECeEEHHHHHHHHHHHHhCh--------hhcCceeEEEeCC-CceeHHHHHHHHH
Confidence 234556677778988889999999999999999999999987631 1123 5899986 6899999999999
Q ss_pred HH---cCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCCCCCCCCHHHHHhhccceeeehhhHHhhcCCCCCC---ChHH
Q 047227 274 EG---LGYQRPRIKIPAFVMMPIAHMVELTYRLLGPYGMKVPQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIV---PLEE 347 (485)
Q Consensus 274 ~~---~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~d~~ka~~~lG~~p~~---~l~e 347 (485)
+. +|.+.+....|.. .. .........|.+|+++ |||+|++ +++|
T Consensus 355 ~~~~~~g~~~~~~~~p~~----------------------~~-------~~~~~~~~~d~~k~~~-LGw~p~~~~~~l~~ 404 (442)
T PLN02572 355 KAGEKLGLDVEVISVPNP----------------------RV-------EAEEHYYNAKHTKLCE-LGLEPHLLSDSLLD 404 (442)
T ss_pred HHHHhhCCCCCeeeCCCC----------------------cc-------cccccccCccHHHHHH-cCCCCCCcHHHHHH
Confidence 98 8765443222210 00 0011123458999986 9999998 8999
Q ss_pred HHHHHHHHHHHhHh
Q 047227 348 GIKRTVDSYSHLRA 361 (485)
Q Consensus 348 ~i~~~~~~~~~~~~ 361 (485)
++.++++||++...
T Consensus 405 ~l~~~~~~~~~~~~ 418 (442)
T PLN02572 405 SLLNFAVKYKDRVD 418 (442)
T ss_pred HHHHHHHHHHhhcc
Confidence 99999999986544
|
|
| >PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-41 Score=365.49 Aligned_cols=320 Identities=20% Similarity=0.254 Sum_probs=243.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhc-CCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHH-HHHHhcC
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRY-DMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQ-VLQALQG 83 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~-G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~-l~~~~~~ 83 (485)
.+|+|||||||||||++|++.|+++ | ++|++++|..... ......++++++.+|++|.++ +.+++++
T Consensus 314 ~~~~VLVTGatGFIGs~Lv~~Ll~~~g-~~V~~l~r~~~~~----------~~~~~~~~~~~~~gDl~d~~~~l~~~l~~ 382 (660)
T PRK08125 314 RRTRVLILGVNGFIGNHLTERLLRDDN-YEVYGLDIGSDAI----------SRFLGHPRFHFVEGDISIHSEWIEYHIKK 382 (660)
T ss_pred cCCEEEEECCCchHHHHHHHHHHhCCC-cEEEEEeCCchhh----------hhhcCCCceEEEeccccCcHHHHHHHhcC
Confidence 5789999999999999999999986 6 6999999865311 111123478999999998655 5778899
Q ss_pred CCEEEEcCCCC---CCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCccccccCCCCcCCCCCCCCC----CC-CC
Q 047227 84 AEVVFHMAAPN---SSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVVFDGVHGIINGNEALPY----PP-KH 155 (485)
Q Consensus 84 ~d~Vih~aa~~---~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy~~~~~~~~~~~e~~~~----~~-~~ 155 (485)
+|+|||+||.. ....++...+++|+.++.+++++|++.+ ++|||+||.++||..... +.+|+.+. |. .|
T Consensus 383 ~D~ViHlAa~~~~~~~~~~~~~~~~~Nv~~t~~ll~a~~~~~-~~~V~~SS~~vyg~~~~~--~~~E~~~~~~~~p~~~p 459 (660)
T PRK08125 383 CDVVLPLVAIATPIEYTRNPLRVFELDFEENLKIIRYCVKYN-KRIIFPSTSEVYGMCTDK--YFDEDTSNLIVGPINKQ 459 (660)
T ss_pred CCEEEECccccCchhhccCHHHHHHhhHHHHHHHHHHHHhcC-CeEEEEcchhhcCCCCCC--CcCccccccccCCCCCC
Confidence 99999999932 3445677889999999999999999998 899999999999754322 33444321 22 35
Q ss_pred CchHHHHHHHHHHHHHHHhCCCCceEEEEecCCcccCCCC----------CChHHHHHHHHcCCCeEEecCCCceeeccc
Q 047227 156 NDFYSATKAEGEALVIKANGTNGLLTCCIRPSSIFGPGDR----------LLVPSLVAAARAGKSKFIIGDGNNVYDFTY 225 (485)
Q Consensus 156 ~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~----------~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~ 225 (485)
.+.|+.||..+|++++.+++.++++++++||+++|||+.. ..++.++..+..++++.++|+|++.++|+|
T Consensus 460 ~s~Yg~sK~~~E~~~~~~~~~~g~~~~ilR~~~vyGp~~~~~~~~~~~~~~~i~~~i~~~~~~~~i~~~g~g~~~rd~i~ 539 (660)
T PRK08125 460 RWIYSVSKQLLDRVIWAYGEKEGLRFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLVDGGKQKRCFTD 539 (660)
T ss_pred ccchHHHHHHHHHHHHHHHHhcCCceEEEEEceeeCCCccccccccccccchHHHHHHHhcCCCCeEEeCCCceeeceee
Confidence 6789999999999999998888999999999999999753 347778888888999889999999999999
Q ss_pred HHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCC-CccHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHh
Q 047227 226 VANVAHAHICAERALASEVTVAEKAAGQAYFVTNME-SIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELTYRLL 304 (485)
Q Consensus 226 v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~-~~t~~el~~~i~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~ 304 (485)
++|+|++++.++++... ...|++||+++++ .++++|+++.+.+.+|.....+.+|..... .
T Consensus 540 v~Dva~a~~~~l~~~~~------~~~g~iyni~~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~----------~-- 601 (660)
T PRK08125 540 IRDGIEALFRIIENKDN------RCDGQIINIGNPDNEASIRELAEMLLASFEKHPLRDHFPPFAGF----------R-- 601 (660)
T ss_pred HHHHHHHHHHHHhcccc------ccCCeEEEcCCCCCceeHHHHHHHHHHHhccCcccccCCccccc----------c--
Confidence 99999999998773111 1347899999985 799999999999999865433333321000 0
Q ss_pred CCCCCCCCCCCHHHHHhhccceeeehhhHHhhcCCCCCCChHHHHHHHHHHHHHhHh
Q 047227 305 GPYGMKVPQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSYSHLRA 361 (485)
Q Consensus 305 ~~~~~~~p~~~~~~~~~~~~~~~~d~~ka~~~lG~~p~~~l~e~i~~~~~~~~~~~~ 361 (485)
. .....+.... ......+.+|++|+++.|||+|+++++|+++++++||++..+
T Consensus 602 -~--~~~~~~~~~~-~~~~~~~~~d~~ka~~~LGw~P~~~lee~l~~~i~~~~~~~~ 654 (660)
T PRK08125 602 -V--VESSSYYGKG-YQDVEHRKPSIRNARRLLDWEPKIDMQETIDETLDFFLRTVD 654 (660)
T ss_pred -c--cccccccccc-cccccccCCChHHHHHHhCCCCCCcHHHHHHHHHHHHHhccc
Confidence 0 0000000000 000112346999999999999999999999999999987554
|
|
| >KOG0747 consensus Putative NAD+-dependent epimerases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-42 Score=309.93 Aligned_cols=312 Identities=24% Similarity=0.328 Sum_probs=251.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCC-ceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc--C
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDM-FSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ--G 83 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--~ 83 (485)
.+++|||||.||||++.+..+.+.-. +....+|.-.--+. .. .++.....++.+++.+|+.|...+..++. .
T Consensus 6 ~~~vlItgg~gfi~Sn~~~~~~~~~p~~~~v~idkL~~~s~--~~---~l~~~~n~p~ykfv~~di~~~~~~~~~~~~~~ 80 (331)
T KOG0747|consen 6 EKNVLITGGAGFIGSNFINYLVDKYPDYKFVNLDKLDYCSN--LK---NLEPVRNSPNYKFVEGDIADADLVLYLFETEE 80 (331)
T ss_pred cceEEEecCcCcchhhhhhhcccCCCCCcEEEEeecccccc--cc---hhhhhccCCCceEeeccccchHHHHhhhccCc
Confidence 37999999999999999999998732 34444443211000 11 13333446889999999999998888886 4
Q ss_pred CCEEEEcCC---CCCCCCchhhhHHHHHHHHHHHHHHHHhcC-CCEEEEecCccccccCCCCcCCCCCCCCCCCCCCchH
Q 047227 84 AEVVFHMAA---PNSSINNHKLHHSVNVEGTKNVIDACAELK-VKRLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDFY 159 (485)
Q Consensus 84 ~d~Vih~aa---~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~-v~r~V~~SS~~vy~~~~~~~~~~~e~~~~~~~~~~~Y 159 (485)
.|.|+|+|+ +..+..++.++...|+.++..++++++..| +++|||+||.+|||+......+. |.. ...|.++|
T Consensus 81 id~vihfaa~t~vd~s~~~~~~~~~nnil~t~~Lle~~~~sg~i~~fvhvSTdeVYGds~~~~~~~-E~s--~~nPtnpy 157 (331)
T KOG0747|consen 81 IDTVIHFAAQTHVDRSFGDSFEFTKNNILSTHVLLEAVRVSGNIRRFVHVSTDEVYGDSDEDAVVG-EAS--LLNPTNPY 157 (331)
T ss_pred hhhhhhhHhhhhhhhhcCchHHHhcCCchhhhhHHHHHHhccCeeEEEEecccceecCcccccccc-ccc--cCCCCCch
Confidence 899999999 455677888999999999999999999996 89999999999999776555443 332 36899999
Q ss_pred HHHHHHHHHHHHHHhCCCCceEEEEecCCcccCCCC--CChHHHHHHHHcCCCeEEecCCCceeecccHHHHHHHHHHHH
Q 047227 160 SATKAEGEALVIKANGTNGLLTCCIRPSSIFGPGDR--LLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICAE 237 (485)
Q Consensus 160 ~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~--~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~D~a~a~~~~~ 237 (485)
+.+|++||..++.|..+++++++++|.++||||+.. ..++.++..+..+++.++.|+|.+.++|+||+|+++++..+.
T Consensus 158 AasKaAaE~~v~Sy~~sy~lpvv~~R~nnVYGP~q~~~klipkFi~l~~~~~~~~i~g~g~~~rs~l~veD~~ea~~~v~ 237 (331)
T KOG0747|consen 158 AASKAAAEMLVRSYGRSYGLPVVTTRMNNVYGPNQYPEKLIPKFIKLAMRGKEYPIHGDGLQTRSYLYVEDVSEAFKAVL 237 (331)
T ss_pred HHHHHHHHHHHHHHhhccCCcEEEEeccCccCCCcChHHHhHHHHHHHHhCCCcceecCcccceeeEeHHHHHHHHHHHH
Confidence 999999999999999999999999999999999875 578999998899999999999999999999999999999886
Q ss_pred HHhccccchhhccCCcEEEeeCCCCccHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCCCCCCCCHH
Q 047227 238 RALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELTYRLLGPYGMKVPQLTPS 317 (485)
Q Consensus 238 ~~~~~~~~~~~~~~g~~ynv~~~~~~t~~el~~~i~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 317 (485)
+. + ..|++|||+++.+++..|+++.|.+.+.+..+....+++ +.+.+.
T Consensus 238 ~K---g------~~geIYNIgtd~e~~~~~l~k~i~eli~~~~~~~~~~p~-----------------------~~~v~d 285 (331)
T KOG0747|consen 238 EK---G------ELGEIYNIGTDDEMRVIDLAKDICELFEKRLPNIDTEPF-----------------------IFFVED 285 (331)
T ss_pred hc---C------CccceeeccCcchhhHHHHHHHHHHHHHHhccCCCCCCc-----------------------ceecCC
Confidence 62 2 458999999999999999999999999886665443332 111111
Q ss_pred HHHhhccceeeehhhHHhhcCCCCCCChHHHHHHHHHHHHHhH
Q 047227 318 RVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSYSHLR 360 (485)
Q Consensus 318 ~~~~~~~~~~~d~~ka~~~lG~~p~~~l~e~i~~~~~~~~~~~ 360 (485)
+..- ...+.+|.+|++ .|||+|.+|+++|++.+++||.++.
T Consensus 286 Rp~n-d~Ry~~~~eKik-~LGw~~~~p~~eGLrktie~y~~~~ 326 (331)
T KOG0747|consen 286 RPYN-DLRYFLDDEKIK-KLGWRPTTPWEEGLRKTIEWYTKNF 326 (331)
T ss_pred CCcc-cccccccHHHHH-hcCCcccCcHHHHHHHHHHHHHhhh
Confidence 1111 112456999999 5999999999999999999998754
|
|
| >KOG1429 consensus dTDP-glucose 4-6-dehydratase/UDP-glucuronic acid decarboxylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-41 Score=306.75 Aligned_cols=304 Identities=23% Similarity=0.275 Sum_probs=246.8
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCC
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGA 84 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 84 (485)
..++||+||||.||||+|||+.|+.+| +.|.++|.-.... .. .+......+.++.+.-|+..+ ++.++
T Consensus 25 ~~~lrI~itGgaGFIgSHLvdkLm~eg-h~VIa~Dn~ftg~---k~---n~~~~~~~~~fel~~hdv~~p-----l~~ev 92 (350)
T KOG1429|consen 25 SQNLRILITGGAGFIGSHLVDKLMTEG-HEVIALDNYFTGR---KE---NLEHWIGHPNFELIRHDVVEP-----LLKEV 92 (350)
T ss_pred CCCcEEEEecCcchHHHHHHHHHHhcC-CeEEEEecccccc---hh---hcchhccCcceeEEEeechhH-----HHHHh
Confidence 346899999999999999999999999 5899988753311 11 134444567888888887665 77789
Q ss_pred CEEEEcCC---CCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCccccccCCCCcCCCCC-CCCCCCCCCchHH
Q 047227 85 EVVFHMAA---PNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVVFDGVHGIINGNE-ALPYPPKHNDFYS 160 (485)
Q Consensus 85 d~Vih~aa---~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy~~~~~~~~~~~e-~~~~~~~~~~~Y~ 160 (485)
|.|+|+|+ +.+...+|..++.+|+.++.+++-.|++.+ +||+++||+.|||+....+..++. ....|..|.+.|.
T Consensus 93 D~IyhLAapasp~~y~~npvktIktN~igtln~lglakrv~-aR~l~aSTseVYgdp~~hpq~e~ywg~vnpigpr~cyd 171 (350)
T KOG1429|consen 93 DQIYHLAAPASPPHYKYNPVKTIKTNVIGTLNMLGLAKRVG-ARFLLASTSEVYGDPLVHPQVETYWGNVNPIGPRSCYD 171 (350)
T ss_pred hhhhhhccCCCCcccccCccceeeecchhhHHHHHHHHHhC-ceEEEeecccccCCcccCCCccccccccCcCCchhhhh
Confidence 99999999 445666889999999999999999999999 699999999999874322222222 2234678889999
Q ss_pred HHHHHHHHHHHHHhCCCCceEEEEecCCcccCCCC----CChHHHHHHHHcCCCeEEecCCCceeecccHHHHHHHHHHH
Q 047227 161 ATKAEGEALVIKANGTNGLLTCCIRPSSIFGPGDR----LLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICA 236 (485)
Q Consensus 161 ~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~----~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~D~a~a~~~~ 236 (485)
..|..+|.++..|+++.|+.+.|.|+.|.|||..+ ..+..+..++.+++++.++|+|.+.|+|+||.|++++++++
T Consensus 172 egKr~aE~L~~~y~k~~giE~rIaRifNtyGPrm~~~dgrvvsnf~~q~lr~epltv~g~G~qtRSF~yvsD~Vegll~L 251 (350)
T KOG1429|consen 172 EGKRVAETLCYAYHKQEGIEVRIARIFNTYGPRMHMDDGRVVSNFIAQALRGEPLTVYGDGKQTRSFQYVSDLVEGLLRL 251 (350)
T ss_pred HHHHHHHHHHHHhhcccCcEEEEEeeecccCCccccCCChhhHHHHHHHhcCCCeEEEcCCcceEEEEeHHHHHHHHHHH
Confidence 99999999999999999999999999999999743 46788899999999999999999999999999999999999
Q ss_pred HHHhccccchhhccCCcEEEeeCCCCccHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCCCCCCCCH
Q 047227 237 ERALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELTYRLLGPYGMKVPQLTP 316 (485)
Q Consensus 237 ~~~~~~~~~~~~~~~g~~ynv~~~~~~t~~el~~~i~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 316 (485)
++. ...+.+|+++++.+|+.|+++++.+..+-...+...+. +.+.|
T Consensus 252 m~s----------~~~~pvNiGnp~e~Tm~elAemv~~~~~~~s~i~~~~~--------------------~~Ddp---- 297 (350)
T KOG1429|consen 252 MES----------DYRGPVNIGNPGEFTMLELAEMVKELIGPVSEIEFVEN--------------------GPDDP---- 297 (350)
T ss_pred hcC----------CCcCCcccCCccceeHHHHHHHHHHHcCCCcceeecCC--------------------CCCCc----
Confidence 773 23345999999999999999999999854433222111 11222
Q ss_pred HHHHhhccceeeehhhHHhhcCCCCCCChHHHHHHHHHHHHHhHhc
Q 047227 317 SRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSYSHLRAE 362 (485)
Q Consensus 317 ~~~~~~~~~~~~d~~ka~~~lG~~p~~~l~e~i~~~~~~~~~~~~~ 362 (485)
..+.-|++|+++.|||.|.++|+|+++.|+.|+++....
T Consensus 298 -------~kR~pDit~ake~LgW~Pkv~L~egL~~t~~~fr~~i~~ 336 (350)
T KOG1429|consen 298 -------RKRKPDITKAKEQLGWEPKVSLREGLPLTVTYFRERIAR 336 (350)
T ss_pred -------cccCccHHHHHHHhCCCCCCcHHHhhHHHHHHHHHHHHH
Confidence 134459999999999999999999999999999987765
|
|
| >TIGR01472 gmd GDP-mannose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-41 Score=334.44 Aligned_cols=325 Identities=18% Similarity=0.165 Sum_probs=233.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhh--hcCCCeEEEEecCCCHHHHHHHhcC--
Q 047227 8 RLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEA--LRSGRAHYVSFDLRHKAQVLQALQG-- 83 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~Dl~d~~~l~~~~~~-- 83 (485)
|+||||||+||||+++++.|+++| ++|++++|...... ........... ....+++++.+|++|.+.+.+++++
T Consensus 1 ~~vlVTGatGfIG~~l~~~L~~~G-~~V~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~ 78 (343)
T TIGR01472 1 KIALITGITGQDGSYLAEFLLEKG-YEVHGLIRRSSSFN-TQRIEHIYEDPHNVNKARMKLHYGDLTDSSNLRRIIDEIK 78 (343)
T ss_pred CeEEEEcCCCcHHHHHHHHHHHCC-CEEEEEecCCcccc-hhhhhhhhhccccccccceeEEEeccCCHHHHHHHHHhCC
Confidence 589999999999999999999999 58999988653110 00000000000 0124689999999999999999985
Q ss_pred CCEEEEcCCCCC---CCCchhhhHHHHHHHHHHHHHHHHhcCCC---EEEEecCccccccCCCCcCCCCCCCCCCCCCCc
Q 047227 84 AEVVFHMAAPNS---SINNHKLHHSVNVEGTKNVIDACAELKVK---RLIYTSSPSVVFDGVHGIINGNEALPYPPKHND 157 (485)
Q Consensus 84 ~d~Vih~aa~~~---~~~~~~~~~~~nv~~t~~ll~a~~~~~v~---r~V~~SS~~vy~~~~~~~~~~~e~~~~~~~~~~ 157 (485)
+|+|||+|+... +..++....++|+.|+.+++++|++.+++ +|||+||.++||.... .+.+|+.+ ..|.+
T Consensus 79 ~d~ViH~Aa~~~~~~~~~~~~~~~~~n~~gt~~ll~a~~~~~~~~~~~~v~~SS~~vyg~~~~--~~~~E~~~--~~p~~ 154 (343)
T TIGR01472 79 PTEIYNLAAQSHVKVSFEIPEYTADVDGIGTLRLLEAVRTLGLIKSVKFYQASTSELYGKVQE--IPQNETTP--FYPRS 154 (343)
T ss_pred CCEEEECCcccccchhhhChHHHHHHHHHHHHHHHHHHHHhCCCcCeeEEEeccHHhhCCCCC--CCCCCCCC--CCCCC
Confidence 799999999422 33456677889999999999999998863 8999999999975332 23455443 56889
Q ss_pred hHHHHHHHHHHHHHHHhCCCCceEEEEecCCcccCCCCC-----ChHHHHHHHHcCCC-eEEecCCCceeecccHHHHHH
Q 047227 158 FYSATKAEGEALVIKANGTNGLLTCCIRPSSIFGPGDRL-----LVPSLVAAARAGKS-KFIIGDGNNVYDFTYVANVAH 231 (485)
Q Consensus 158 ~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~~-----~~~~~~~~~~~g~~-~~~~g~g~~~~~~i~v~D~a~ 231 (485)
+|+.||..+|.+++.+++++++++++.|+.++|||+... .+..++..+..|++ ..++|+|++.+||+||+|+|+
T Consensus 155 ~Y~~sK~~~e~~~~~~~~~~~~~~~~~~~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~rd~i~V~D~a~ 234 (343)
T TIGR01472 155 PYAAAKLYAHWITVNYREAYGLFAVNGILFNHESPRRGENFVTRKITRAAAKIKLGLQEKLYLGNLDAKRDWGHAKDYVE 234 (343)
T ss_pred hhHHHHHHHHHHHHHHHHHhCCceEEEeecccCCCCCCccccchHHHHHHHHHHcCCCCceeeCCCccccCceeHHHHHH
Confidence 999999999999999988889999999999999996432 23444555666764 456699999999999999999
Q ss_pred HHHHHHHHhccccchhhccCCcEEEeeCCCCccHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCCCC
Q 047227 232 AHICAERALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELTYRLLGPYGMKV 311 (485)
Q Consensus 232 a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~~t~~el~~~i~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (485)
+++.+++. ..++.|||++++++|+.|+++.+.+.+|.+......+...... ..+..+..-.. ..
T Consensus 235 a~~~~~~~----------~~~~~yni~~g~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~----~~~~~~~~~~~--~~ 298 (343)
T TIGR01472 235 AMWLMLQQ----------DKPDDYVIATGETHSVREFVEVSFEYIGKTLNWKDKGINEVGR----CKETGKVHVEI--DP 298 (343)
T ss_pred HHHHHHhc----------CCCccEEecCCCceeHHHHHHHHHHHcCCCccccccccccccc----ccccCceeEEe--Cc
Confidence 99988763 1235899999999999999999999999754321100000000 00000000000 00
Q ss_pred CCCCHHHHHhhccceeeehhhHHhhcCCCCCCChHHHHHHHHHHHHH
Q 047227 312 PQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSYSH 358 (485)
Q Consensus 312 p~~~~~~~~~~~~~~~~d~~ka~~~lG~~p~~~l~e~i~~~~~~~~~ 358 (485)
....+.. ......|++|++++|||+|+++++|+++++++++++
T Consensus 299 ~~~~~~~----~~~~~~d~~k~~~~lgw~p~~~l~egi~~~~~~~~~ 341 (343)
T TIGR01472 299 RYFRPTE----VDLLLGDATKAKEKLGWKPEVSFEKLVKEMVEEDLE 341 (343)
T ss_pred cccCCCc----cchhcCCHHHHHHhhCCCCCCCHHHHHHHHHHHHHh
Confidence 0001111 112246999999999999999999999999999875
|
Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116). |
| >PLN02653 GDP-mannose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-40 Score=330.65 Aligned_cols=312 Identities=19% Similarity=0.203 Sum_probs=236.8
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhh-hhhcCCCeEEEEecCCCHHHHHHHhcC
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILG-EALRSGRAHYVSFDLRHKAQVLQALQG 83 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~Dl~d~~~l~~~~~~ 83 (485)
.++|+||||||+||||+++++.|+++| ++|++++|..........+ .... ......+++++.+|++|.+++.+++++
T Consensus 4 ~~~~~vlVTGatGfiG~~l~~~L~~~G-~~V~~~~r~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~ 81 (340)
T PLN02653 4 PPRKVALITGITGQDGSYLTEFLLSKG-YEVHGIIRRSSNFNTQRLD-HIYIDPHPNKARMKLHYGDLSDASSLRRWLDD 81 (340)
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHCC-CEEEEEecccccccccchh-hhccccccccCceEEEEecCCCHHHHHHHHHH
Confidence 356899999999999999999999999 6899988764321100000 0000 001124688999999999999999874
Q ss_pred --CCEEEEcCCCC---CCCCchhhhHHHHHHHHHHHHHHHHhcCCC-----EEEEecCccccccCCCCcCCCCCCCCCCC
Q 047227 84 --AEVVFHMAAPN---SSINNHKLHHSVNVEGTKNVIDACAELKVK-----RLIYTSSPSVVFDGVHGIINGNEALPYPP 153 (485)
Q Consensus 84 --~d~Vih~aa~~---~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~-----r~V~~SS~~vy~~~~~~~~~~~e~~~~~~ 153 (485)
+|+|||+|+.. ....++...+++|+.++.+++++|++.+++ +|||+||.++||.... +.+|+.+ .
T Consensus 82 ~~~d~Vih~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~~~~~~v~~Ss~~vyg~~~~---~~~E~~~--~ 156 (340)
T PLN02653 82 IKPDEVYNLAAQSHVAVSFEMPDYTADVVATGALRLLEAVRLHGQETGRQIKYYQAGSSEMYGSTPP---PQSETTP--F 156 (340)
T ss_pred cCCCEEEECCcccchhhhhhChhHHHHHHHHHHHHHHHHHHHhccccccceeEEEeccHHHhCCCCC---CCCCCCC--C
Confidence 79999999942 233566778899999999999999999875 8999999999975432 3455543 5
Q ss_pred CCCchHHHHHHHHHHHHHHHhCCCCceEEEEecCCcccCCCCC-C----hHHHHHHHHcCCCeEE-ecCCCceeecccHH
Q 047227 154 KHNDFYSATKAEGEALVIKANGTNGLLTCCIRPSSIFGPGDRL-L----VPSLVAAARAGKSKFI-IGDGNNVYDFTYVA 227 (485)
Q Consensus 154 ~~~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~~-~----~~~~~~~~~~g~~~~~-~g~g~~~~~~i~v~ 227 (485)
.|.+.|+.||..+|.+++.++++++++++..|+.++|||+... + +..++..+..+++..+ .|++++.++|+|++
T Consensus 157 ~p~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~~~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~rd~i~v~ 236 (340)
T PLN02653 157 HPRSPYAVAKVAAHWYTVNYREAYGLFACNGILFNHESPRRGENFVTRKITRAVGRIKVGLQKKLFLGNLDASRDWGFAG 236 (340)
T ss_pred CCCChhHHHHHHHHHHHHHHHHHcCCeEEEeeeccccCCCCCcccchhHHHHHHHHHHcCCCCceEeCCCcceecceeHH
Confidence 6889999999999999999988889999999999999996532 2 3344556667766544 59999999999999
Q ss_pred HHHHHHHHHHHHhccccchhhccCCcEEEeeCCCCccHHHHHHHHHHHcCCCCC-CccCCHHHHHHHHHHHHHHHHHhCC
Q 047227 228 NVAHAHICAERALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRP-RIKIPAFVMMPIAHMVELTYRLLGP 306 (485)
Q Consensus 228 D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~~t~~el~~~i~~~~g~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~ 306 (485)
|+|++++.+++. ..++.||+++++++++.|+++.+.+.+|.+.. .+.+.
T Consensus 237 D~a~a~~~~~~~----------~~~~~yni~~g~~~s~~e~~~~i~~~~g~~~~~~~~~~-------------------- 286 (340)
T PLN02653 237 DYVEAMWLMLQQ----------EKPDDYVVATEESHTVEEFLEEAFGYVGLNWKDHVEID-------------------- 286 (340)
T ss_pred HHHHHHHHHHhc----------CCCCcEEecCCCceeHHHHHHHHHHHcCCCCCcceeeC--------------------
Confidence 999999998773 12468999999999999999999999986421 11110
Q ss_pred CCCCCCCCCHHHHHhhccceeeehhhHHhhcCCCCCCChHHHHHHHHHHHHHhHh
Q 047227 307 YGMKVPQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSYSHLRA 361 (485)
Q Consensus 307 ~~~~~p~~~~~~~~~~~~~~~~d~~ka~~~lG~~p~~~l~e~i~~~~~~~~~~~~ 361 (485)
.+...+... .....|++|++++|||+|+++++|+|+++++||++...
T Consensus 287 ----~~~~~~~~~----~~~~~d~~k~~~~lgw~p~~~l~~gi~~~~~~~~~~~~ 333 (340)
T PLN02653 287 ----PRYFRPAEV----DNLKGDASKAREVLGWKPKVGFEQLVKMMVDEDLELAK 333 (340)
T ss_pred ----cccCCcccc----ccccCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcC
Confidence 000111111 12346999999999999999999999999999986433
|
|
| >TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-40 Score=331.89 Aligned_cols=314 Identities=23% Similarity=0.241 Sum_probs=238.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcC--
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQG-- 83 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~-- 83 (485)
++|+||||||+||||+++++.|+++| ++|++++|........ ........+++++.+|++|.+++.+++++
T Consensus 3 ~~k~ilItGatG~IG~~l~~~L~~~G-~~V~~~~r~~~~~~~~------~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 75 (349)
T TIGR02622 3 QGKKVLVTGHTGFKGSWLSLWLLELG-AEVYGYSLDPPTSPNL------FELLNLAKKIEDHFGDIRDAAKLRKAIAEFK 75 (349)
T ss_pred CCCEEEEECCCChhHHHHHHHHHHCC-CEEEEEeCCCccchhH------HHHHhhcCCceEEEccCCCHHHHHHHHhhcC
Confidence 35899999999999999999999999 5899988765321100 01111123577899999999999999875
Q ss_pred CCEEEEcCCCC---CCCCchhhhHHHHHHHHHHHHHHHHhcC-CCEEEEecCccccccCCCCcCCCCCCCCCCCCCCchH
Q 047227 84 AEVVFHMAAPN---SSINNHKLHHSVNVEGTKNVIDACAELK-VKRLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDFY 159 (485)
Q Consensus 84 ~d~Vih~aa~~---~~~~~~~~~~~~nv~~t~~ll~a~~~~~-v~r~V~~SS~~vy~~~~~~~~~~~e~~~~~~~~~~~Y 159 (485)
+|+|||+|+.. ....++...+++|+.++.+++++|++.+ ++++||+||+.+|++... ..+.+|..+ ..|.++|
T Consensus 76 ~d~vih~A~~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~iv~~SS~~vyg~~~~-~~~~~e~~~--~~p~~~Y 152 (349)
T TIGR02622 76 PEIVFHLAAQPLVRKSYADPLETFETNVMGTVNLLEAIRAIGSVKAVVNVTSDKCYRNDEW-VWGYRETDP--LGGHDPY 152 (349)
T ss_pred CCEEEECCcccccccchhCHHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEechhhhCCCCC-CCCCccCCC--CCCCCcc
Confidence 79999999932 2445778899999999999999999887 889999999999975321 223344433 4678899
Q ss_pred HHHHHHHHHHHHHHhCCC-------CceEEEEecCCcccCCC---CCChHHHHHHHHcCCCeEEecCCCceeecccHHHH
Q 047227 160 SATKAEGEALVIKANGTN-------GLLTCCIRPSSIFGPGD---RLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANV 229 (485)
Q Consensus 160 ~~sK~~~E~~~~~~~~~~-------g~~~~ilRp~~v~Gp~~---~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~D~ 229 (485)
+.+|..+|.+++.+++.+ +++++++||+++|||++ ..+++.++..+..|+++. .+++++.++|+|++|+
T Consensus 153 ~~sK~~~e~~~~~~~~~~~~~~~~~~i~~~~lR~~~vyGp~~~~~~~~~~~~~~~~~~g~~~~-~~~g~~~rd~i~v~D~ 231 (349)
T TIGR02622 153 SSSKACAELVIASYRSSFFGVANFHGIKIASARAGNVIGGGDWAEDRLIPDVIRAFSSNKIVI-IRNPDATRPWQHVLEP 231 (349)
T ss_pred hhHHHHHHHHHHHHHHHhhcccccCCCcEEEEccCcccCCCcchhhhhhHHHHHHHhcCCCeE-ECCCCcccceeeHHHH
Confidence 999999999999876543 89999999999999975 256788888888888765 4678999999999999
Q ss_pred HHHHHHHHHHhccccchhhccCCcEEEeeCC--CCccHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhCCC
Q 047227 230 AHAHICAERALASEVTVAEKAAGQAYFVTNM--ESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELTYRLLGPY 307 (485)
Q Consensus 230 a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~--~~~t~~el~~~i~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 307 (485)
|++++.+++..... +...+++|||+++ ++++..|+++.+.+.++.....+..+.
T Consensus 232 a~a~~~~~~~~~~~----~~~~~~~yni~s~~~~~~s~~~~~~~i~~~~~~~~~~~~~~~-------------------- 287 (349)
T TIGR02622 232 LSGYLLLAEKLFTG----QAEFAGAWNFGPRASDNARVVELVVDALEFWWGDDAEWEDDS-------------------- 287 (349)
T ss_pred HHHHHHHHHHHhhc----CccccceeeeCCCcccCcCHHHHHHHHHHHhcCCCCceeecc--------------------
Confidence 99999887743221 1123579999974 799999999999987763211111100
Q ss_pred CCCCCCCCHHHHHhhccceeeehhhHHhhcCCCCCCChHHHHHHHHHHHHHhHhc
Q 047227 308 GMKVPQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSYSHLRAE 362 (485)
Q Consensus 308 ~~~~p~~~~~~~~~~~~~~~~d~~ka~~~lG~~p~~~l~e~i~~~~~~~~~~~~~ 362 (485)
.+ ..+.. .....+|++|++++|||+|+++++++++++++|+++....
T Consensus 288 ---~~-~~~~~----~~~~~~d~~k~~~~lgw~p~~~l~~gi~~~i~w~~~~~~~ 334 (349)
T TIGR02622 288 ---DL-NHPHE----ARLLKLDSSKARTLLGWHPRWGLEEAVSRTVDWYKAWLRG 334 (349)
T ss_pred ---CC-CCCcc----cceeecCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhcC
Confidence 00 00000 1124579999999999999999999999999999876554
|
Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose. |
| >PRK10084 dTDP-glucose 4,6 dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-40 Score=331.59 Aligned_cols=315 Identities=26% Similarity=0.267 Sum_probs=238.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc--CCC
Q 047227 8 RLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ--GAE 85 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--~~d 85 (485)
|+||||||+||||+++++.|+++|+..|.++++...... ... ........+++++.+|++|.+++.++++ ++|
T Consensus 1 mkilITGgtG~iG~~l~~~L~~~g~~~v~~~~~~~~~~~--~~~---~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 75 (352)
T PRK10084 1 MKILVTGGAGFIGSAVVRHIINNTQDSVVNVDKLTYAGN--LES---LADVSDSERYVFEHADICDRAELDRIFAQHQPD 75 (352)
T ss_pred CeEEEECCCcHHhHHHHHHHHHhCCCeEEEecCCCccch--HHH---HHhcccCCceEEEEecCCCHHHHHHHHHhcCCC
Confidence 589999999999999999999999655665654321000 000 1111112457889999999999999997 489
Q ss_pred EEEEcCCCCC---CCCchhhhHHHHHHHHHHHHHHHHhc---------CCCEEEEecCccccccCCCC--------cCCC
Q 047227 86 VVFHMAAPNS---SINNHKLHHSVNVEGTKNVIDACAEL---------KVKRLIYTSSPSVVFDGVHG--------IING 145 (485)
Q Consensus 86 ~Vih~aa~~~---~~~~~~~~~~~nv~~t~~ll~a~~~~---------~v~r~V~~SS~~vy~~~~~~--------~~~~ 145 (485)
+|||+|+... ...+++.++++|+.|+.+++++|++. ++++|||+||.++|+..... ..+.
T Consensus 76 ~vih~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~~~~~~~~~~~ 155 (352)
T PRK10084 76 AVMHLAAESHVDRSITGPAAFIETNIVGTYVLLEAARNYWSALDEDKKNAFRFHHISTDEVYGDLPHPDEVENSEELPLF 155 (352)
T ss_pred EEEECCcccCCcchhcCchhhhhhhhHHHHHHHHHHHHhccccccccccceeEEEecchhhcCCCCccccccccccCCCc
Confidence 9999999432 23467889999999999999999874 46799999999999753211 0112
Q ss_pred CCCCCCCCCCCchHHHHHHHHHHHHHHHhCCCCceEEEEecCCcccCCCC--CChHHHHHHHHcCCCeEEecCCCceeec
Q 047227 146 NEALPYPPKHNDFYSATKAEGEALVIKANGTNGLLTCCIRPSSIFGPGDR--LLVPSLVAAARAGKSKFIIGDGNNVYDF 223 (485)
Q Consensus 146 ~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~--~~~~~~~~~~~~g~~~~~~g~g~~~~~~ 223 (485)
+|+. +..|.+.|+.+|..+|.+++.+++.++++++++|++++|||++. .+++.++..+..++.+.++|++++.++|
T Consensus 156 ~E~~--~~~p~~~Y~~sK~~~E~~~~~~~~~~g~~~vilr~~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 233 (352)
T PRK10084 156 TETT--AYAPSSPYSASKASSDHLVRAWLRTYGLPTIVTNCSNNYGPYHFPEKLIPLVILNALEGKPLPIYGKGDQIRDW 233 (352)
T ss_pred cccC--CCCCCChhHHHHHHHHHHHHHHHHHhCCCEEEEeccceeCCCcCccchHHHHHHHHhcCCCeEEeCCCCeEEee
Confidence 3433 35688899999999999999998888999999999999999863 4677788888888888889999999999
Q ss_pred ccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCCCccHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHH
Q 047227 224 TYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELTYRL 303 (485)
Q Consensus 224 i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~~t~~el~~~i~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~ 303 (485)
+|++|+|+++..+++. . ..+++||+++++++++.|+++.+.+.+|...+. ..+.. ..
T Consensus 234 v~v~D~a~a~~~~l~~---~------~~~~~yni~~~~~~s~~~~~~~i~~~~~~~~p~-~~~~~---------~~---- 290 (352)
T PRK10084 234 LYVEDHARALYKVVTE---G------KAGETYNIGGHNEKKNLDVVLTICDLLDEIVPK-ATSYR---------EQ---- 290 (352)
T ss_pred EEHHHHHHHHHHHHhc---C------CCCceEEeCCCCcCcHHHHHHHHHHHhcccccc-ccchh---------hh----
Confidence 9999999999988762 1 347899999999999999999999999864322 11110 00
Q ss_pred hCCCCCCCCCCCHHHHHhhccceeeehhhHHhhcCCCCCCChHHHHHHHHHHHHHhHh
Q 047227 304 LGPYGMKVPQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSYSHLRA 361 (485)
Q Consensus 304 ~~~~~~~~p~~~~~~~~~~~~~~~~d~~ka~~~lG~~p~~~l~e~i~~~~~~~~~~~~ 361 (485)
.+. ....|. ....+.+|++|+++.+||+|+++++++++++++||++..+
T Consensus 291 ~~~-~~~~~~--------~~~~~~~d~~k~~~~lg~~p~~~l~~~l~~~~~~~~~~~~ 339 (352)
T PRK10084 291 ITY-VADRPG--------HDRRYAIDASKISRELGWKPQETFESGIRKTVEWYLANTE 339 (352)
T ss_pred ccc-cccCCC--------CCceeeeCHHHHHHHcCCCCcCCHHHHHHHHHHHHHhCHH
Confidence 000 000110 0113457999999999999999999999999999988654
|
|
| >TIGR03466 HpnA hopanoid-associated sugar epimerase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-39 Score=319.54 Aligned_cols=321 Identities=27% Similarity=0.367 Sum_probs=252.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCCCEE
Q 047227 8 RLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGAEVV 87 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~d~V 87 (485)
|+||||||+||||+++++.|+++| ++|++++|...... .+...+++++.+|++|.+++.++++++|+|
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~g-~~V~~~~r~~~~~~-----------~~~~~~~~~~~~D~~~~~~l~~~~~~~d~v 68 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQG-EEVRVLVRPTSDRR-----------NLEGLDVEIVEGDLRDPASLRKAVAGCRAL 68 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHCC-CEEEEEEecCcccc-----------ccccCCceEEEeeCCCHHHHHHHHhCCCEE
Confidence 579999999999999999999999 69999998654211 011236889999999999999999999999
Q ss_pred EEcCCCC-CCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCccccccCCCCcCCCCCCCCC-CCCCCchHHHHHHH
Q 047227 88 FHMAAPN-SSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVVFDGVHGIINGNEALPY-PPKHNDFYSATKAE 165 (485)
Q Consensus 88 ih~aa~~-~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy~~~~~~~~~~~e~~~~-~~~~~~~Y~~sK~~ 165 (485)
||+|+.. ....++...+++|+.++.+++++|++.+++++|++||..+|++.... .+.+|+.+. +..+.+.|+.+|..
T Consensus 69 i~~a~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~-~~~~e~~~~~~~~~~~~Y~~sK~~ 147 (328)
T TIGR03466 69 FHVAADYRLWAPDPEEMYAANVEGTRNLLRAALEAGVERVVYTSSVATLGVRGDG-TPADETTPSSLDDMIGHYKRSKFL 147 (328)
T ss_pred EEeceecccCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEechhhcCcCCCC-CCcCccCCCCcccccChHHHHHHH
Confidence 9999832 23456788899999999999999999999999999999999743222 233444432 22335689999999
Q ss_pred HHHHHHHHhCCCCceEEEEecCCcccCCCCC--ChHHHHHHHHcCCCeEEecCCCceeecccHHHHHHHHHHHHHHhccc
Q 047227 166 GEALVIKANGTNGLLTCCIRPSSIFGPGDRL--LVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICAERALASE 243 (485)
Q Consensus 166 ~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~~--~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~D~a~a~~~~~~~~~~~ 243 (485)
+|++++.+..+++++++++||+++|||+... ....++..+..++..... + ...+|+|++|+|++++.++++
T Consensus 148 ~e~~~~~~~~~~~~~~~ilR~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~i~v~D~a~a~~~~~~~---- 220 (328)
T TIGR03466 148 AEQAALEMAAEKGLPVVIVNPSTPIGPRDIKPTPTGRIIVDFLNGKMPAYV-D--TGLNLVHVDDVAEGHLLALER---- 220 (328)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCccCCCCCCCCCcHHHHHHHHHcCCCceee-C--CCcceEEHHHHHHHHHHHHhC----
Confidence 9999999988789999999999999998642 222333333444332222 2 346899999999999988763
Q ss_pred cchhhccCCcEEEeeCCCCccHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCCCCCCCCHHHHHhhc
Q 047227 244 VTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELTYRLLGPYGMKVPQLTPSRVRLLS 323 (485)
Q Consensus 244 ~~~~~~~~g~~ynv~~~~~~t~~el~~~i~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 323 (485)
+ ..++.|+++ ++++++.|+++.+.+.+|.+.+.+.+|.+....++.+.+++....+ ..|.+......+..
T Consensus 221 ----~-~~~~~~~~~-~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 290 (328)
T TIGR03466 221 ----G-RIGERYILG-GENLTLKQILDKLAEITGRPAPRVKLPRWLLLPVAWGAEALARLTG----KEPRVTVDGVRMAK 290 (328)
T ss_pred ----C-CCCceEEec-CCCcCHHHHHHHHHHHhCCCCCCCcCCHHHHHHHHHHHHHHHHhcC----CCCCCCHHHHHHHh
Confidence 1 346788885 5889999999999999999888888999998888888887776554 23334444445555
Q ss_pred cceeeehhhHHhhcCCCCCCChHHHHHHHHHHHHHh
Q 047227 324 CSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSYSHL 359 (485)
Q Consensus 324 ~~~~~d~~ka~~~lG~~p~~~l~e~i~~~~~~~~~~ 359 (485)
....+|++|+++.|||+|. +++|+++++++||++.
T Consensus 291 ~~~~~d~~k~~~~lg~~p~-~~~~~i~~~~~~~~~~ 325 (328)
T TIGR03466 291 KKMFFSSAKAVRELGYRQR-PAREALRDAVEWFRAN 325 (328)
T ss_pred ccCCCChHHHHHHcCCCCc-CHHHHHHHHHHHHHHh
Confidence 6677899999999999996 9999999999999874
|
The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene. |
| >PLN02260 probable rhamnose biosynthetic enzyme | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=352.13 Aligned_cols=310 Identities=26% Similarity=0.352 Sum_probs=242.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCC-ceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHh--c
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDM-FSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQAL--Q 82 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~--~ 82 (485)
++|+|||||||||||+++++.|+++|+ ++|+++++..... . ... +......++++++.+|++|.+.+.+++ .
T Consensus 5 ~~~~VLVTGatGfIG~~lv~~Ll~~g~~~~V~~~d~~~~~~-~-~~~---l~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~ 79 (668)
T PLN02260 5 EPKNILITGAAGFIASHVANRLIRNYPDYKIVVLDKLDYCS-N-LKN---LNPSKSSPNFKFVKGDIASADLVNYLLITE 79 (668)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHhCCCCEEEEEeCCCccc-h-hhh---hhhcccCCCeEEEECCCCChHHHHHHHhhc
Confidence 468999999999999999999999842 5888888642110 0 000 111112357899999999998888776 5
Q ss_pred CCCEEEEcCCCCC---CCCchhhhHHHHHHHHHHHHHHHHhcC-CCEEEEecCccccccCCCCc-CCCCCCCCCCCCCCc
Q 047227 83 GAEVVFHMAAPNS---SINNHKLHHSVNVEGTKNVIDACAELK-VKRLIYTSSPSVVFDGVHGI-INGNEALPYPPKHND 157 (485)
Q Consensus 83 ~~d~Vih~aa~~~---~~~~~~~~~~~nv~~t~~ll~a~~~~~-v~r~V~~SS~~vy~~~~~~~-~~~~e~~~~~~~~~~ 157 (485)
++|+|||+|+... ...++..++++|+.+|.+++++|++.+ ++||||+||..+|++..... .+.+|+.+ ..|.+
T Consensus 80 ~~D~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~vkr~I~~SS~~vyg~~~~~~~~~~~E~~~--~~p~~ 157 (668)
T PLN02260 80 GIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDADVGNHEASQ--LLPTN 157 (668)
T ss_pred CCCEEEECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEcchHHhCCCccccccCccccCC--CCCCC
Confidence 7999999999432 334667888999999999999999988 89999999999998644322 22234333 45788
Q ss_pred hHHHHHHHHHHHHHHHhCCCCceEEEEecCCcccCCCC--CChHHHHHHHHcCCCeEEecCCCceeecccHHHHHHHHHH
Q 047227 158 FYSATKAEGEALVIKANGTNGLLTCCIRPSSIFGPGDR--LLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHIC 235 (485)
Q Consensus 158 ~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~--~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~D~a~a~~~ 235 (485)
+|+.+|..+|++++.+.+.++++++++||++||||++. .+++.++..+..|+++.++|++++.++|+|++|+|+++..
T Consensus 158 ~Y~~sK~~aE~~v~~~~~~~~l~~vilR~~~VyGp~~~~~~~i~~~~~~a~~g~~i~i~g~g~~~r~~ihV~Dva~a~~~ 237 (668)
T PLN02260 158 PYSATKAGAEMLVMAYGRSYGLPVITTRGNNVYGPNQFPEKLIPKFILLAMQGKPLPIHGDGSNVRSYLYCEDVAEAFEV 237 (668)
T ss_pred CcHHHHHHHHHHHHHHHHHcCCCEEEECcccccCcCCCcccHHHHHHHHHhCCCCeEEecCCCceEeeEEHHHHHHHHHH
Confidence 99999999999999998888999999999999999863 4678888888899999999999999999999999999998
Q ss_pred HHHHhccccchhhccCCcEEEeeCCCCccHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCCCCCCCC
Q 047227 236 AERALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELTYRLLGPYGMKVPQLT 315 (485)
Q Consensus 236 ~~~~~~~~~~~~~~~~g~~ynv~~~~~~t~~el~~~i~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 315 (485)
+++. . ..+++||+++++.+++.|+++.+.+.+|.+.... +.. ....| +
T Consensus 238 ~l~~---~------~~~~vyni~~~~~~s~~el~~~i~~~~g~~~~~~-i~~--------------------~~~~p-~- 285 (668)
T PLN02260 238 VLHK---G------EVGHVYNIGTKKERRVIDVAKDICKLFGLDPEKS-IKF--------------------VENRP-F- 285 (668)
T ss_pred HHhc---C------CCCCEEEECCCCeeEHHHHHHHHHHHhCCCCcce-eee--------------------cCCCC-C-
Confidence 8652 1 3468999999999999999999999999754311 000 00011 0
Q ss_pred HHHHHhhccceeeehhhHHhhcCCCCCCChHHHHHHHHHHHHHhHh
Q 047227 316 PSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSYSHLRA 361 (485)
Q Consensus 316 ~~~~~~~~~~~~~d~~ka~~~lG~~p~~~l~e~i~~~~~~~~~~~~ 361 (485)
....+.+|++|+++ |||+|.++++|+++++++||+++..
T Consensus 286 ------~~~~~~~d~~k~~~-lGw~p~~~~~egl~~~i~w~~~~~~ 324 (668)
T PLN02260 286 ------NDQRYFLDDQKLKK-LGWQERTSWEEGLKKTMEWYTSNPD 324 (668)
T ss_pred ------CcceeecCHHHHHH-cCCCCCCCHHHHHHHHHHHHHhChh
Confidence 11234579999975 9999999999999999999998765
|
|
| >PLN02214 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-39 Score=324.05 Aligned_cols=304 Identities=23% Similarity=0.265 Sum_probs=224.7
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhc-CCCeEEEEecCCCHHHHHHHhcC
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALR-SGRAHYVSFDLRHKAQVLQALQG 83 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~Dl~d~~~l~~~~~~ 83 (485)
.++|+||||||+||||+++++.|+++| ++|++++|....... . .+..... ..+++++.+|++|.+++.+++++
T Consensus 8 ~~~~~vlVTGatGfIG~~l~~~L~~~G-~~V~~~~r~~~~~~~---~--~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~ 81 (342)
T PLN02214 8 PAGKTVCVTGAGGYIASWIVKILLERG-YTVKGTVRNPDDPKN---T--HLRELEGGKERLILCKADLQDYEALKAAIDG 81 (342)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCc-CEEEEEeCCchhhhH---H--HHHHhhCCCCcEEEEecCcCChHHHHHHHhc
Confidence 356899999999999999999999999 689998886431100 0 0111111 23588999999999999999999
Q ss_pred CCEEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCc-cccccCCCCc-CCCCCCCC----CCCCCCc
Q 047227 84 AEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSP-SVVFDGVHGI-INGNEALP----YPPKHND 157 (485)
Q Consensus 84 ~d~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~-~vy~~~~~~~-~~~~e~~~----~~~~~~~ 157 (485)
+|+|||+|++. ..++...+++|+.++.+++++|++.+++||||+||. ++|+...... ...+|+.+ .+..|.+
T Consensus 82 ~d~Vih~A~~~--~~~~~~~~~~nv~gt~~ll~aa~~~~v~r~V~~SS~~avyg~~~~~~~~~~~E~~~~~~~~~~~p~~ 159 (342)
T PLN02214 82 CDGVFHTASPV--TDDPEQMVEPAVNGAKFVINAAAEAKVKRVVITSSIGAVYMDPNRDPEAVVDESCWSDLDFCKNTKN 159 (342)
T ss_pred CCEEEEecCCC--CCCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeccceeeeccCCCCCCcccCcccCCChhhcccccc
Confidence 99999999954 346778899999999999999999999999999996 5776432211 12344432 1335778
Q ss_pred hHHHHHHHHHHHHHHHhCCCCceEEEEecCCcccCCCCCC----hHHHHHHHHcCCCeEEecCCCceeecccHHHHHHHH
Q 047227 158 FYSATKAEGEALVIKANGTNGLLTCCIRPSSIFGPGDRLL----VPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAH 233 (485)
Q Consensus 158 ~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~~~----~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~D~a~a~ 233 (485)
.|+.+|..+|++++.+.++++++++++||++||||+.... +..++ .+..|+.. ..+ ++.++|+||+|+|+++
T Consensus 160 ~Y~~sK~~aE~~~~~~~~~~g~~~v~lRp~~vyGp~~~~~~~~~~~~~~-~~~~g~~~-~~~--~~~~~~i~V~Dva~a~ 235 (342)
T PLN02214 160 WYCYGKMVAEQAAWETAKEKGVDLVVLNPVLVLGPPLQPTINASLYHVL-KYLTGSAK-TYA--NLTQAYVDVRDVALAH 235 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCcEEEEeCCceECCCCCCCCCchHHHHH-HHHcCCcc-cCC--CCCcCeeEHHHHHHHH
Confidence 9999999999999999888899999999999999986532 22333 33445433 233 4678999999999999
Q ss_pred HHHHHHhccccchhhccCCcEEEeeCCCCccHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCCCCCC
Q 047227 234 ICAERALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELTYRLLGPYGMKVPQ 313 (485)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~g~~ynv~~~~~~t~~el~~~i~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~ 313 (485)
+.+++. + ..++.||+++ +.+++.|+++.+.+.++.. .+|... . ....+
T Consensus 236 ~~al~~--------~-~~~g~yn~~~-~~~~~~el~~~i~~~~~~~----~~~~~~---------------~--~~~~~- 283 (342)
T PLN02214 236 VLVYEA--------P-SASGRYLLAE-SARHRGEVVEILAKLFPEY----PLPTKC---------------K--DEKNP- 283 (342)
T ss_pred HHHHhC--------c-ccCCcEEEec-CCCCHHHHHHHHHHHCCCC----CCCCCC---------------c--cccCC-
Confidence 999773 1 2345899987 5789999999999998531 122110 0 00001
Q ss_pred CCHHHHHhhccceeeehhhHHhhcCCCCCCChHHHHHHHHHHHHHhHhc
Q 047227 314 LTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSYSHLRAE 362 (485)
Q Consensus 314 ~~~~~~~~~~~~~~~d~~ka~~~lG~~p~~~l~e~i~~~~~~~~~~~~~ 362 (485)
......+|++|+++ |||+| .+++|+|+++++||++.+.-
T Consensus 284 --------~~~~~~~d~~k~~~-LG~~p-~~lee~i~~~~~~~~~~~~~ 322 (342)
T PLN02214 284 --------RAKPYKFTNQKIKD-LGLEF-TSTKQSLYDTVKSLQEKGHL 322 (342)
T ss_pred --------CCCccccCcHHHHH-cCCcc-cCHHHHHHHHHHHHHHcCCC
Confidence 01123479999985 99999 59999999999999886543
|
|
| >PLN02240 UDP-glucose 4-epimerase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-39 Score=323.10 Aligned_cols=315 Identities=22% Similarity=0.248 Sum_probs=235.6
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhh--cCCCeEEEEecCCCHHHHHHHhc
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEAL--RSGRAHYVSFDLRHKAQVLQALQ 82 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~Dl~d~~~l~~~~~ 82 (485)
+++++|||||||||+|+++++.|+++| ++|++++|........... ..... ...+++++.+|++|++++.++++
T Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g-~~V~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~ 78 (352)
T PLN02240 3 LMGRTILVTGGAGYIGSHTVLQLLLAG-YKVVVIDNLDNSSEEALRR---VKELAGDLGDNLVFHKVDLRDKEALEKVFA 78 (352)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCC-CEEEEEeCCCcchHHHHHH---HHHhhcccCccceEEecCcCCHHHHHHHHH
Confidence 345899999999999999999999999 5899988653211000000 11111 12468899999999999999886
Q ss_pred --CCCEEEEcCCCC---CCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCccccccCCCCcCCCCCCCCCCCCCCc
Q 047227 83 --GAEVVFHMAAPN---SSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVVFDGVHGIINGNEALPYPPKHND 157 (485)
Q Consensus 83 --~~d~Vih~aa~~---~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy~~~~~~~~~~~e~~~~~~~~~~ 157 (485)
++|+|||+|+.. ....++...+++|+.++.+++++|++.++++|||+||+++|+.... .+.+|+.+ ..|.+
T Consensus 79 ~~~~d~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss~~vyg~~~~--~~~~E~~~--~~~~~ 154 (352)
T PLN02240 79 STRFDAVIHFAGLKAVGESVAKPLLYYDNNLVGTINLLEVMAKHGCKKLVFSSSATVYGQPEE--VPCTEEFP--LSATN 154 (352)
T ss_pred hCCCCEEEEccccCCccccccCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEccHHHhCCCCC--CCCCCCCC--CCCCC
Confidence 589999999932 2335677889999999999999999999999999999999964322 23455443 56788
Q ss_pred hHHHHHHHHHHHHHHHhCC-CCceEEEEecCCcccCCCC--------C---ChHHHHHHHHcCC--CeEEec------CC
Q 047227 158 FYSATKAEGEALVIKANGT-NGLLTCCIRPSSIFGPGDR--------L---LVPSLVAAARAGK--SKFIIG------DG 217 (485)
Q Consensus 158 ~Y~~sK~~~E~~~~~~~~~-~g~~~~ilRp~~v~Gp~~~--------~---~~~~~~~~~~~g~--~~~~~g------~g 217 (485)
.|+.+|..+|++++.++.. .+++++++|++++||++.. . .+..++..+..++ .+.++| +|
T Consensus 155 ~Y~~sK~~~e~~~~~~~~~~~~~~~~~~R~~~v~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g 234 (352)
T PLN02240 155 PYGRTKLFIEEICRDIHASDPEWKIILLRYFNPVGAHPSGRIGEDPKGIPNNLMPYVQQVAVGRRPELTVFGNDYPTKDG 234 (352)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCEEEEeecCcCCCCccccccCCCCCCcchHHHHHHHHHhCCCCceEEeCCCCCCCCC
Confidence 9999999999999987644 5789999999999997431 1 1222344444443 345555 67
Q ss_pred CceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCCCccHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHH
Q 047227 218 NNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMV 297 (485)
Q Consensus 218 ~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~~t~~el~~~i~~~~g~~~~~~~~p~~~~~~~~~~~ 297 (485)
.+.++|+|++|+|++++.+++.+... +...+++||+++++++|++|+++.+.+.+|.+.+....+.
T Consensus 235 ~~~~~~i~v~D~a~a~~~a~~~~~~~----~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~~~~---------- 300 (352)
T PLN02240 235 TGVRDYIHVMDLADGHIAALRKLFTD----PDIGCEAYNLGTGKGTSVLEMVAAFEKASGKKIPLKLAPR---------- 300 (352)
T ss_pred CEEEeeEEHHHHHHHHHHHHhhhhhc----cCCCCceEEccCCCcEeHHHHHHHHHHHhCCCCCceeCCC----------
Confidence 89999999999999999888753211 1244689999999999999999999999997655432221
Q ss_pred HHHHHHhCCCCCCCCCCCHHHHHhhccceeeehhhHHhhcCCCCCCChHHHHHHHHHHHHHhHhc
Q 047227 298 ELTYRLLGPYGMKVPQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSYSHLRAE 362 (485)
Q Consensus 298 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~d~~ka~~~lG~~p~~~l~e~i~~~~~~~~~~~~~ 362 (485)
.+. . ......|++|++++|||+|+++++|+++++++|+++++..
T Consensus 301 -------------~~~---~-----~~~~~~d~~k~~~~lg~~p~~~l~~~l~~~~~~~~~~~~~ 344 (352)
T PLN02240 301 -------------RPG---D-----AEEVYASTEKAEKELGWKAKYGIDEMCRDQWNWASKNPYG 344 (352)
T ss_pred -------------CCC---C-----hhhhhcCHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCccc
Confidence 010 0 0122359999999999999999999999999999886543
|
|
| >KOG1371 consensus UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-39 Score=301.31 Aligned_cols=312 Identities=23% Similarity=0.264 Sum_probs=247.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc--CC
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ--GA 84 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--~~ 84 (485)
.++||||||+||||+|.+.+|+++| +.|+++|+-.......... .........++.++.+|++|.++++++|+ ++
T Consensus 2 ~~~VLVtGgaGyiGsht~l~L~~~g-y~v~~vDNl~n~~~~sl~r--~~~l~~~~~~v~f~~~Dl~D~~~L~kvF~~~~f 78 (343)
T KOG1371|consen 2 GKHVLVTGGAGYIGSHTVLALLKRG-YGVVIVDNLNNSYLESLKR--VRQLLGEGKSVFFVEGDLNDAEALEKLFSEVKF 78 (343)
T ss_pred CcEEEEecCCcceehHHHHHHHhCC-CcEEEEecccccchhHHHH--HHHhcCCCCceEEEEeccCCHHHHHHHHhhcCC
Confidence 4789999999999999999999999 7999999876544332221 11111224789999999999999999997 49
Q ss_pred CEEEEcCC---CCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCccccccCCCCcCCCCCCCCCCCCCCchHHH
Q 047227 85 EVVFHMAA---PNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDFYSA 161 (485)
Q Consensus 85 d~Vih~aa---~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy~~~~~~~~~~~e~~~~~~~~~~~Y~~ 161 (485)
|.|+|+|+ ...+..+|..++..|+.||.+++++|++.+++.+||.||+.|||.... .|..|+.|.. .|.++|+.
T Consensus 79 d~V~Hfa~~~~vgeS~~~p~~Y~~nNi~gtlnlLe~~~~~~~~~~V~sssatvYG~p~~--ip~te~~~t~-~p~~pyg~ 155 (343)
T KOG1371|consen 79 DAVMHFAALAAVGESMENPLSYYHNNIAGTLNLLEVMKAHNVKALVFSSSATVYGLPTK--VPITEEDPTD-QPTNPYGK 155 (343)
T ss_pred ceEEeehhhhccchhhhCchhheehhhhhHHHHHHHHHHcCCceEEEecceeeecCcce--eeccCcCCCC-CCCCcchh
Confidence 99999999 556778899999999999999999999999999999999999975444 6777777643 59999999
Q ss_pred HHHHHHHHHHHHhCCCCceEEEEecCCccc--CCCC----------CChHHHHHHH--------HcCCCeEEecCCCcee
Q 047227 162 TKAEGEALVIKANGTNGLLTCCIRPSSIFG--PGDR----------LLVPSLVAAA--------RAGKSKFIIGDGNNVY 221 (485)
Q Consensus 162 sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G--p~~~----------~~~~~~~~~~--------~~g~~~~~~g~g~~~~ 221 (485)
+|...|+++..+++.+++.++.||.++++| |..+ ..++.....+ .-|... ...||+..+
T Consensus 156 tK~~iE~i~~d~~~~~~~~~~~LRyfn~~ga~p~Gr~ge~p~~~~nnl~p~v~~vaigr~~~l~v~g~d~-~t~dgt~vr 234 (343)
T KOG1371|consen 156 TKKAIEEIIHDYNKAYGWKVTGLRYFNVIGAHPSGRIGEAPLGIPNNLLPYVFQVAIGRRPNLQVVGRDY-TTIDGTIVR 234 (343)
T ss_pred hhHHHHHHHHhhhccccceEEEEEeccccCccccCccCCCCccCcccccccccchhhcccccceeecCcc-cccCCCeee
Confidence 999999999999999999999999999999 4321 1233222211 112222 223678999
Q ss_pred ecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCCCccHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHH
Q 047227 222 DFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELTY 301 (485)
Q Consensus 222 ~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~~t~~el~~~i~~~~g~~~~~~~~p~~~~~~~~~~~~~~~ 301 (485)
+++|+-|+|+.++.+++.+... ..-++||++++...++.|+++.+.++.|...+...+|.
T Consensus 235 dyi~v~Dla~~h~~al~k~~~~------~~~~i~Nlgtg~g~~V~~lv~a~~k~~g~~~k~~~v~~-------------- 294 (343)
T KOG1371|consen 235 DYIHVLDLADGHVAALGKLRGA------AEFGVYNLGTGKGSSVLELVTAFEKALGVKIKKKVVPR-------------- 294 (343)
T ss_pred cceeeEehHHHHHHHhhccccc------hheeeEeecCCCCccHHHHHHHHHHHhcCCCCccccCC--------------
Confidence 9999999999999999866543 22349999999999999999999999998766543321
Q ss_pred HHhCCCCCCCCCCCHHHHHhhccceeeehhhHHhhcCCCCCCChHHHHHHHHHHHHHhHhc
Q 047227 302 RLLGPYGMKVPQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSYSHLRAE 362 (485)
Q Consensus 302 ~~~~~~~~~~p~~~~~~~~~~~~~~~~d~~ka~~~lG~~p~~~l~e~i~~~~~~~~~~~~~ 362 (485)
...+. ...+.+.++++++|||+|...++|+++++++|+...+..
T Consensus 295 -----R~gdv------------~~~ya~~~~a~~elgwk~~~~iee~c~dlw~W~~~np~g 338 (343)
T KOG1371|consen 295 -----RNGDV------------AFVYANPSKAQRELGWKAKYGLQEMLKDLWRWQKQNPSG 338 (343)
T ss_pred -----CCCCc------------eeeeeChHHHHHHhCCccccCHHHHHHHHHHHHhcCCCc
Confidence 00111 145679999999999999999999999999999886653
|
|
| >PLN00198 anthocyanidin reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-38 Score=316.26 Aligned_cols=308 Identities=23% Similarity=0.282 Sum_probs=221.5
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcC
Q 047227 4 EENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQG 83 (485)
Q Consensus 4 ~~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~ 83 (485)
++++|+||||||+||||+++++.|+++| ++|+++.|........ .........++++++.+|++|++++.+++++
T Consensus 6 ~~~~~~vlItG~~GfIG~~l~~~L~~~g-~~V~~~~r~~~~~~~~----~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~ 80 (338)
T PLN00198 6 PTGKKTACVIGGTGFLASLLIKLLLQKG-YAVNTTVRDPENQKKI----AHLRALQELGDLKIFGADLTDEESFEAPIAG 80 (338)
T ss_pred CCCCCeEEEECCchHHHHHHHHHHHHCC-CEEEEEECCCCCHHHH----HHHHhcCCCCceEEEEcCCCChHHHHHHHhc
Confidence 3557899999999999999999999999 5888887764311000 0000001113688999999999999999999
Q ss_pred CCEEEEcCCCCC-CCCchh-hhHHHHHHHHHHHHHHHHhc-CCCEEEEecCccccccCCC--CcCCCCCCCC-------C
Q 047227 84 AEVVFHMAAPNS-SINNHK-LHHSVNVEGTKNVIDACAEL-KVKRLIYTSSPSVVFDGVH--GIINGNEALP-------Y 151 (485)
Q Consensus 84 ~d~Vih~aa~~~-~~~~~~-~~~~~nv~~t~~ll~a~~~~-~v~r~V~~SS~~vy~~~~~--~~~~~~e~~~-------~ 151 (485)
+|+|||+|+... ...++. .++++|+.++.+++++|++. +++||||+||.++|+.... ...+.+|... .
T Consensus 81 ~d~vih~A~~~~~~~~~~~~~~~~~nv~g~~~ll~a~~~~~~~~~~v~~SS~~~~g~~~~~~~~~~~~E~~~~~~~~~~~ 160 (338)
T PLN00198 81 CDLVFHVATPVNFASEDPENDMIKPAIQGVHNVLKACAKAKSVKRVILTSSAAAVSINKLSGTGLVMNEKNWTDVEFLTS 160 (338)
T ss_pred CCEEEEeCCCCccCCCChHHHHHHHHHHHHHHHHHHHHhcCCccEEEEeecceeeeccCCCCCCceeccccCCchhhhhh
Confidence 999999999432 223333 46799999999999999887 5899999999999974321 1112222210 1
Q ss_pred CCCCCchHHHHHHHHHHHHHHHhCCCCceEEEEecCCcccCCCCCChHH---HHHHHHcCCCeEEec-CCCc----eeec
Q 047227 152 PPKHNDFYSATKAEGEALVIKANGTNGLLTCCIRPSSIFGPGDRLLVPS---LVAAARAGKSKFIIG-DGNN----VYDF 223 (485)
Q Consensus 152 ~~~~~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~~~~~~---~~~~~~~g~~~~~~g-~g~~----~~~~ 223 (485)
+..|.++|+.||..+|.+++.+++.++++++++||+++|||+....++. ++..+..++.+.+.| ++.+ .++|
T Consensus 161 ~~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~~~R~~~vyGp~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 240 (338)
T PLN00198 161 EKPPTWGYPASKTLAEKAAWKFAEENNIDLITVIPTLMAGPSLTSDIPSSLSLAMSLITGNEFLINGLKGMQMLSGSISI 240 (338)
T ss_pred cCCccchhHHHHHHHHHHHHHHHHhcCceEEEEeCCceECCCccCCCCCcHHHHHHHHcCCccccccccccccccCCcce
Confidence 2346788999999999999999988899999999999999985432222 334556676666655 3333 3799
Q ss_pred ccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCCCccHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHH
Q 047227 224 TYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELTYRL 303 (485)
Q Consensus 224 i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~~t~~el~~~i~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~ 303 (485)
+||+|+|++++.+++. + ..++.| +++++.+++.|+++.+.+.++.. .++...
T Consensus 241 i~V~D~a~a~~~~~~~--------~-~~~~~~-~~~~~~~s~~el~~~i~~~~~~~----~~~~~~-------------- 292 (338)
T PLN00198 241 THVEDVCRAHIFLAEK--------E-SASGRY-ICCAANTSVPELAKFLIKRYPQY----QVPTDF-------------- 292 (338)
T ss_pred eEHHHHHHHHHHHhhC--------c-CcCCcE-EEecCCCCHHHHHHHHHHHCCCC----CCCccc--------------
Confidence 9999999999988763 1 123467 45567889999999999887631 111100
Q ss_pred hCCCCCCCCCCCHHHHHhhccceeeehhhHHhhcCCCCCCChHHHHHHHHHHHHHh
Q 047227 304 LGPYGMKVPQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSYSHL 359 (485)
Q Consensus 304 ~~~~~~~~p~~~~~~~~~~~~~~~~d~~ka~~~lG~~p~~~l~e~i~~~~~~~~~~ 359 (485)
+ ..+. ......|++|+++ +||+|+++++|+++++++||++.
T Consensus 293 ----~-~~~~---------~~~~~~~~~k~~~-~G~~p~~~l~~gi~~~~~~~~~~ 333 (338)
T PLN00198 293 ----G-DFPS---------KAKLIISSEKLIS-EGFSFEYGIEEIYDQTVEYFKAK 333 (338)
T ss_pred ----c-ccCC---------CCccccChHHHHh-CCceecCcHHHHHHHHHHHHHHc
Confidence 0 0110 0123469999998 59999999999999999999863
|
|
| >PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-38 Score=310.60 Aligned_cols=280 Identities=14% Similarity=0.156 Sum_probs=216.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc--CCC
Q 047227 8 RLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ--GAE 85 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--~~d 85 (485)
|+||||||+||||+++++.|+++| +|++++|... .+.+|++|.+.+.++++ ++|
T Consensus 1 m~iLVtG~~GfiGs~l~~~L~~~g--~V~~~~~~~~----------------------~~~~Dl~d~~~~~~~~~~~~~D 56 (299)
T PRK09987 1 MNILLFGKTGQVGWELQRALAPLG--NLIALDVHST----------------------DYCGDFSNPEGVAETVRKIRPD 56 (299)
T ss_pred CeEEEECCCCHHHHHHHHHhhccC--CEEEeccccc----------------------cccCCCCCHHHHHHHHHhcCCC
Confidence 589999999999999999999999 4777776421 24589999999999998 589
Q ss_pred EEEEcCCCC---CCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCccccccCCCCcCCCCCCCCCCCCCCchHHHH
Q 047227 86 VVFHMAAPN---SSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDFYSAT 162 (485)
Q Consensus 86 ~Vih~aa~~---~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy~~~~~~~~~~~e~~~~~~~~~~~Y~~s 162 (485)
+|||+|+.. .+..++...+++|+.++.+++++|++.|+ ++||+||..||++.... +.+|+.+ ..|.+.|+.+
T Consensus 57 ~Vih~Aa~~~~~~~~~~~~~~~~~N~~~~~~l~~aa~~~g~-~~v~~Ss~~Vy~~~~~~--p~~E~~~--~~P~~~Yg~s 131 (299)
T PRK09987 57 VIVNAAAHTAVDKAESEPEFAQLLNATSVEAIAKAANEVGA-WVVHYSTDYVFPGTGDI--PWQETDA--TAPLNVYGET 131 (299)
T ss_pred EEEECCccCCcchhhcCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEccceEECCCCCC--CcCCCCC--CCCCCHHHHH
Confidence 999999933 34457788889999999999999999996 79999999999643322 3444443 5788999999
Q ss_pred HHHHHHHHHHHhCCCCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecC--CCceeecccHHHHHHHHHHHHHHh
Q 047227 163 KAEGEALVIKANGTNGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGD--GNNVYDFTYVANVAHAHICAERAL 240 (485)
Q Consensus 163 K~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~--g~~~~~~i~v~D~a~a~~~~~~~~ 240 (485)
|..+|++++.+.. +.+++|++++|||+.+.+++.+++.+..++++.++++ +.+.+++.+++|+++++..+++.
T Consensus 132 K~~~E~~~~~~~~----~~~ilR~~~vyGp~~~~~~~~~~~~~~~~~~~~v~~d~~g~~~~~~~~~d~~~~~~~~~~~~- 206 (299)
T PRK09987 132 KLAGEKALQEHCA----KHLIFRTSWVYAGKGNNFAKTMLRLAKEREELSVINDQFGAPTGAELLADCTAHAIRVALNK- 206 (299)
T ss_pred HHHHHHHHHHhCC----CEEEEecceecCCCCCCHHHHHHHHHhcCCCeEEeCCCcCCCCCHHHHHHHHHHHHHHhhcc-
Confidence 9999999988654 4699999999999877778888888888989999988 67777777788888888776541
Q ss_pred ccccchhhccCCcEEEeeCCCCccHHHHHHHHHHHcC---CCCC---CccCCHHHHHHHHHHHHHHHHHhCCCCCCCCCC
Q 047227 241 ASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLG---YQRP---RIKIPAFVMMPIAHMVELTYRLLGPYGMKVPQL 314 (485)
Q Consensus 241 ~~~~~~~~~~~g~~ynv~~~~~~t~~el~~~i~~~~g---~~~~---~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 314 (485)
. ..+++||+++++++|+.|+++.+.+..+ .+.+ ...+|... . +.+..
T Consensus 207 -------~-~~~giyni~~~~~~s~~e~~~~i~~~~~~~g~~~~~~~i~~~~~~~--------------~-----~~~~~ 259 (299)
T PRK09987 207 -------P-EVAGLYHLVASGTTTWHDYAALVFEEARKAGITLALNKLNAVPTSA--------------Y-----PTPAR 259 (299)
T ss_pred -------C-CCCCeEEeeCCCCccHHHHHHHHHHHHHhcCCCcCcCeeeecchhh--------------c-----CCCCC
Confidence 1 2236999999999999999999987643 3321 11111110 0 01100
Q ss_pred CHHHHHhhccceeeehhhHHhhcCCCCCCChHHHHHHHHHHH
Q 047227 315 TPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSY 356 (485)
Q Consensus 315 ~~~~~~~~~~~~~~d~~ka~~~lG~~p~~~l~e~i~~~~~~~ 356 (485)
......+|++|+++.+||+|. +++|+++++++.+
T Consensus 260 -------rp~~~~ld~~k~~~~lg~~~~-~~~~~l~~~~~~~ 293 (299)
T PRK09987 260 -------RPHNSRLNTEKFQQNFALVLP-DWQVGVKRMLTEL 293 (299)
T ss_pred -------CCCcccCCHHHHHHHhCCCCc-cHHHHHHHHHHHH
Confidence 112346799999999999985 9999999999765
|
|
| >PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-39 Score=314.60 Aligned_cols=287 Identities=19% Similarity=0.228 Sum_probs=208.5
Q ss_pred EEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCC---HHHH-HHHhc---
Q 047227 10 CVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRH---KAQV-LQALQ--- 82 (485)
Q Consensus 10 iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d---~~~l-~~~~~--- 82 (485)
||||||+||||++|++.|+++|+..|.+.++... . .. ......+|+.| .+++ .++++
T Consensus 2 ilVtGa~GfiG~~l~~~L~~~g~~~v~~~~~~~~-~----~~-----------~~~~~~~~~~d~~~~~~~~~~~~~~~~ 65 (308)
T PRK11150 2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKD-G----TK-----------FVNLVDLDIADYMDKEDFLAQIMAGDD 65 (308)
T ss_pred EEEecCCcHHHHHHHHHHHhCCCceEEEecCCCc-c----hH-----------HHhhhhhhhhhhhhHHHHHHHHhcccc
Confidence 8999999999999999999999534544444321 0 00 01122344544 3333 33432
Q ss_pred --CCCEEEEcCCC-CCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCccccccCCCCcCCCCCCCCCCCCCCchH
Q 047227 83 --GAEVVFHMAAP-NSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDFY 159 (485)
Q Consensus 83 --~~d~Vih~aa~-~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy~~~~~~~~~~~e~~~~~~~~~~~Y 159 (485)
++|+|||+|+. .....++...++.|+.++.+++++|++.++ +|||+||+++|++.... +.+|+. +..|.++|
T Consensus 66 ~~~~d~Vih~A~~~~~~~~~~~~~~~~n~~~t~~ll~~~~~~~~-~~i~~SS~~vyg~~~~~--~~~E~~--~~~p~~~Y 140 (308)
T PRK11150 66 FGDIEAIFHEGACSSTTEWDGKYMMDNNYQYSKELLHYCLEREI-PFLYASSAATYGGRTDD--FIEERE--YEKPLNVY 140 (308)
T ss_pred cCCccEEEECceecCCcCCChHHHHHHHHHHHHHHHHHHHHcCC-cEEEEcchHHhCcCCCC--CCccCC--CCCCCCHH
Confidence 69999999983 222334566889999999999999999997 69999999999754322 234433 35778899
Q ss_pred HHHHHHHHHHHHHHhCCCCceEEEEecCCcccCCCCC--C----hHHHHHHHHcCCCeEEe-cCCCceeecccHHHHHHH
Q 047227 160 SATKAEGEALVIKANGTNGLLTCCIRPSSIFGPGDRL--L----VPSLVAAARAGKSKFII-GDGNNVYDFTYVANVAHA 232 (485)
Q Consensus 160 ~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~~--~----~~~~~~~~~~g~~~~~~-g~g~~~~~~i~v~D~a~a 232 (485)
+.+|..+|++++.++...+++++++||+++|||++.. . ...+...+.+|+...++ |+++..++|+|++|+|++
T Consensus 141 ~~sK~~~E~~~~~~~~~~~~~~~~lR~~~vyG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~r~~i~v~D~a~a 220 (308)
T PRK11150 141 GYSKFLFDEYVRQILPEANSQICGFRYFNVYGPREGHKGSMASVAFHLNNQLNNGENPKLFEGSENFKRDFVYVGDVAAV 220 (308)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEeeeeecCCCCCCCCccchhHHHHHHHHhcCCCCEEecCCCceeeeeeeHHHHHHH
Confidence 9999999999999987789999999999999998632 2 23445667777765555 667789999999999999
Q ss_pred HHHHHHHhccccchhhccCCcEEEeeCCCCccHHHHHHHHHHHcCCCC-CCccCCHHHHHHHHHHHHHHHHHhCCCCCCC
Q 047227 233 HICAERALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQR-PRIKIPAFVMMPIAHMVELTYRLLGPYGMKV 311 (485)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~~t~~el~~~i~~~~g~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (485)
++.+++. ..+++||+++++++++.|+++.+.+.+|... .....|..
T Consensus 221 ~~~~~~~----------~~~~~yni~~~~~~s~~el~~~i~~~~~~~~~~~~~~~~~----------------------- 267 (308)
T PRK11150 221 NLWFWEN----------GVSGIFNCGTGRAESFQAVADAVLAYHKKGEIEYIPFPDK----------------------- 267 (308)
T ss_pred HHHHHhc----------CCCCeEEcCCCCceeHHHHHHHHHHHhCCCcceeccCccc-----------------------
Confidence 9888662 2246999999999999999999999998421 11111110
Q ss_pred CCCCHHHHHhhccceeeehhhHHhhcCCCCC-CChHHHHHHHHHHHH
Q 047227 312 PQLTPSRVRLLSCSRTFDCSKAKDLLGYMPI-VPLEEGIKRTVDSYS 357 (485)
Q Consensus 312 p~~~~~~~~~~~~~~~~d~~ka~~~lG~~p~-~~l~e~i~~~~~~~~ 357 (485)
.. .........|++|+++ +||+|. .+++|+++++++|+.
T Consensus 268 --~~----~~~~~~~~~d~~k~~~-~g~~p~~~~~~~gl~~~~~~~~ 307 (308)
T PRK11150 268 --LK----GRYQAFTQADLTKLRA-AGYDKPFKTVAEGVAEYMAWLN 307 (308)
T ss_pred --cc----cccceecccCHHHHHh-cCCCCCCCCHHHHHHHHHHHhh
Confidence 00 0011123569999997 799987 499999999999985
|
|
| >PRK10675 UDP-galactose-4-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-38 Score=315.48 Aligned_cols=308 Identities=23% Similarity=0.241 Sum_probs=229.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc--CCC
Q 047227 8 RLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ--GAE 85 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--~~d 85 (485)
|+||||||+||||+++++.|+++| ++|+++++.......... .+. .....++.++.+|++|++++.++++ ++|
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 75 (338)
T PRK10675 1 MRVLVTGGSGYIGSHTCVQLLQNG-HDVVILDNLCNSKRSVLP---VIE-RLGGKHPTFVEGDIRNEALLTEILHDHAID 75 (338)
T ss_pred CeEEEECCCChHHHHHHHHHHHCC-CeEEEEecCCCchHhHHH---HHH-HhcCCCceEEEccCCCHHHHHHHHhcCCCC
Confidence 589999999999999999999999 588888764321100000 011 1123457888999999999999886 599
Q ss_pred EEEEcCCCCC---CCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCccccccCCCCcCCCCCCCCCCCCCCchHHHH
Q 047227 86 VVFHMAAPNS---SINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDFYSAT 162 (485)
Q Consensus 86 ~Vih~aa~~~---~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy~~~~~~~~~~~e~~~~~~~~~~~Y~~s 162 (485)
+|||+|+... ...++...+++|+.++.+++++|++.++++||++||.++|+.... .+.+|+.|. ..|.+.|+.+
T Consensus 76 ~vvh~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss~~~yg~~~~--~~~~E~~~~-~~p~~~Y~~s 152 (338)
T PRK10675 76 TVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNLIFSSSATVYGDQPK--IPYVESFPT-GTPQSPYGKS 152 (338)
T ss_pred EEEECCccccccchhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccHHhhCCCCC--CccccccCC-CCCCChhHHH
Confidence 9999998322 234566789999999999999999999999999999999974322 234555442 2578899999
Q ss_pred HHHHHHHHHHHhCC-CCceEEEEecCCcccCCCC--------C----ChHHHHHHHHcCC--CeEEec------CCCcee
Q 047227 163 KAEGEALVIKANGT-NGLLTCCIRPSSIFGPGDR--------L----LVPSLVAAARAGK--SKFIIG------DGNNVY 221 (485)
Q Consensus 163 K~~~E~~~~~~~~~-~g~~~~ilRp~~v~Gp~~~--------~----~~~~~~~~~~~g~--~~~~~g------~g~~~~ 221 (485)
|..+|++++.+++. .+++++++|++++|||... . +++.+ ..+..++ .+.++| +|.+++
T Consensus 153 K~~~E~~~~~~~~~~~~~~~~ilR~~~v~g~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~ 231 (338)
T PRK10675 153 KLMVEQILTDLQKAQPDWSIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYI-AQVAVGRRDSLAIFGNDYPTEDGTGVR 231 (338)
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEeeeecCCCcccccccCCCCChhHHHHHH-HHHHhcCCCceEEeCCcCCCCCCcEEE
Confidence 99999999998754 4799999999999997421 1 22333 3344332 344554 678899
Q ss_pred ecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCCCccHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHH
Q 047227 222 DFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELTY 301 (485)
Q Consensus 222 ~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~~t~~el~~~i~~~~g~~~~~~~~p~~~~~~~~~~~~~~~ 301 (485)
+|+|++|+|++++.+++..... ..+++||+++++++|+.|+++.+.+.+|.+.+....|..
T Consensus 232 ~~v~v~D~a~~~~~~~~~~~~~------~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~------------- 292 (338)
T PRK10675 232 DYIHVMDLADGHVAAMEKLANK------PGVHIYNLGAGVGSSVLDVVNAFSKACGKPVNYHFAPRR------------- 292 (338)
T ss_pred eeEEHHHHHHHHHHHHHhhhcc------CCCceEEecCCCceeHHHHHHHHHHHhCCCCCeeeCCCC-------------
Confidence 9999999999999987642111 335799999999999999999999999976543322210
Q ss_pred HHhCCCCCCCCCCCHHHHHhhccceeeehhhHHhhcCCCCCCChHHHHHHHHHHHHHhHh
Q 047227 302 RLLGPYGMKVPQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSYSHLRA 361 (485)
Q Consensus 302 ~~~~~~~~~~p~~~~~~~~~~~~~~~~d~~ka~~~lG~~p~~~l~e~i~~~~~~~~~~~~ 361 (485)
+ .. ......|++|+++.+||+|.++++++++++++|++++..
T Consensus 293 ----------~----~~----~~~~~~~~~k~~~~lg~~p~~~~~~~~~~~~~~~~~~~~ 334 (338)
T PRK10675 293 ----------E----GD----LPAYWADASKADRELNWRVTRTLDEMAQDTWHWQSRHPQ 334 (338)
T ss_pred ----------C----Cc----hhhhhcCHHHHHHHhCCCCcCcHHHHHHHHHHHHHhhhh
Confidence 0 00 012346999999999999999999999999999988543
|
|
| >TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-38 Score=312.90 Aligned_cols=305 Identities=28% Similarity=0.327 Sum_probs=238.0
Q ss_pred EEEEEcCCCchHHHHHHHHHhcC-CceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcC--CC
Q 047227 9 LCVVTGGRGFAARHLVEMLIRYD-MFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQG--AE 85 (485)
Q Consensus 9 ~iLVtGgtG~iG~~l~~~Ll~~G-~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~--~d 85 (485)
+|||||||||||++++++|+++| .++|+++++...... ... .......++++++.+|++|++++.+++++ +|
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~~~~~~~~~--~~~---~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d 75 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVLDKLTYAGN--LEN---LADLEDNPRYRFVKGDIGDRELVSRLFTEHQPD 75 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhCCCCEEEEecCCCcchh--hhh---hhhhccCCCcEEEEcCCcCHHHHHHHHhhcCCC
Confidence 58999999999999999999987 357888876422110 000 11111234788999999999999999987 99
Q ss_pred EEEEcCCCC---CCCCchhhhHHHHHHHHHHHHHHHHhcCCC-EEEEecCccccccCCCCcCCCCCCCCCCCCCCchHHH
Q 047227 86 VVFHMAAPN---SSINNHKLHHSVNVEGTKNVIDACAELKVK-RLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDFYSA 161 (485)
Q Consensus 86 ~Vih~aa~~---~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~-r~V~~SS~~vy~~~~~~~~~~~e~~~~~~~~~~~Y~~ 161 (485)
+|||+|+.. ....++..++++|+.++.+++++|++.+++ ++||+||..+|+...... +.+|..+ ..|.+.|+.
T Consensus 76 ~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~i~~Ss~~v~g~~~~~~-~~~e~~~--~~~~~~Y~~ 152 (317)
T TIGR01181 76 AVVHFAAESHVDRSISGPAAFIETNVVGTYTLLEAVRKYWHEFRFHHISTDEVYGDLEKGD-AFTETTP--LAPSSPYSA 152 (317)
T ss_pred EEEEcccccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCceEEEeeccceeCCCCCCC-CcCCCCC--CCCCCchHH
Confidence 999999932 233467788999999999999999997643 899999999997543221 2344433 467789999
Q ss_pred HHHHHHHHHHHHhCCCCceEEEEecCCcccCCCC--CChHHHHHHHHcCCCeEEecCCCceeecccHHHHHHHHHHHHHH
Q 047227 162 TKAEGEALVIKANGTNGLLTCCIRPSSIFGPGDR--LLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICAERA 239 (485)
Q Consensus 162 sK~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~--~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~D~a~a~~~~~~~ 239 (485)
+|..+|.+++.++.+.+++++++||+.+|||+.. .+++.++..+..++++.+++++++.++|+|++|+|+++..+++.
T Consensus 153 sK~~~e~~~~~~~~~~~~~~~i~R~~~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~D~a~~~~~~~~~ 232 (317)
T TIGR01181 153 SKAASDHLVRAYHRTYGLPALITRCSNNYGPYQFPEKLIPLMITNALAGKPLPVYGDGQQVRDWLYVEDHCRAIYLVLEK 232 (317)
T ss_pred HHHHHHHHHHHHHHHhCCCeEEEEeccccCCCCCcccHHHHHHHHHhcCCCceEeCCCceEEeeEEHHHHHHHHHHHHcC
Confidence 9999999999988778999999999999999753 56778888888888888899999999999999999999988762
Q ss_pred hccccchhhccCCcEEEeeCCCCccHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCCCCCCCCHHHH
Q 047227 240 LASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELTYRLLGPYGMKVPQLTPSRV 319 (485)
Q Consensus 240 ~~~~~~~~~~~~g~~ynv~~~~~~t~~el~~~i~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 319 (485)
...+++||+++++++++.|+++.+.+.+|.+...+.... ..+ ..
T Consensus 233 ---------~~~~~~~~~~~~~~~s~~~~~~~i~~~~~~~~~~~~~~~----------------------~~~----~~- 276 (317)
T TIGR01181 233 ---------GRVGETYNIGGGNERTNLEVVETILELLGKDEDLITHVE----------------------DRP----GH- 276 (317)
T ss_pred ---------CCCCceEEeCCCCceeHHHHHHHHHHHhCCCcccccccC----------------------CCc----cc-
Confidence 134689999999999999999999999986533221100 001 00
Q ss_pred HhhccceeeehhhHHhhcCCCCCCChHHHHHHHHHHHHHhH
Q 047227 320 RLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSYSHLR 360 (485)
Q Consensus 320 ~~~~~~~~~d~~ka~~~lG~~p~~~l~e~i~~~~~~~~~~~ 360 (485)
.....+|++|+++.|||+|+++++++++++++||++..
T Consensus 277 ---~~~~~~~~~k~~~~lG~~p~~~~~~~i~~~~~~~~~~~ 314 (317)
T TIGR01181 277 ---DRRYAIDASKIKRELGWAPKYTFEEGLRKTVQWYLDNE 314 (317)
T ss_pred ---hhhhcCCHHHHHHHhCCCCCCcHHHHHHHHHHHHHhcc
Confidence 01124699999999999999999999999999997643
|
This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor. |
| >COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-38 Score=310.47 Aligned_cols=299 Identities=31% Similarity=0.438 Sum_probs=238.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCC-CE
Q 047227 8 RLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGA-EV 86 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~-d~ 86 (485)
|+|||||||||||++|++.|+++| ++|++++|........ . .+++++.+|+.|.+...+++++. |+
T Consensus 1 ~~ILVtG~tGfiG~~l~~~L~~~g-~~V~~~~r~~~~~~~~-----------~-~~~~~~~~d~~~~~~~~~~~~~~~d~ 67 (314)
T COG0451 1 MRILVTGGAGFIGSHLVERLLAAG-HDVRGLDRLRDGLDPL-----------L-SGVEFVVLDLTDRDLVDELAKGVPDA 67 (314)
T ss_pred CeEEEEcCcccHHHHHHHHHHhCC-CeEEEEeCCCcccccc-----------c-cccceeeecccchHHHHHHHhcCCCE
Confidence 359999999999999999999999 5999999875522111 0 46889999999998888888887 99
Q ss_pred EEEcCCCCCCCC----chhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCccccccCCCCcCCCCCCCCCCCCCCchHHHH
Q 047227 87 VFHMAAPNSSIN----NHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDFYSAT 162 (485)
Q Consensus 87 Vih~aa~~~~~~----~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy~~~~~~~~~~~e~~~~~~~~~~~Y~~s 162 (485)
|||+|+...... ++..++++|+.++.+++++|++.+++++||+||.++|+.. ....+.+|+. .+..|.++|+.+
T Consensus 68 vih~aa~~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~~~~~v~~ss~~~~~~~-~~~~~~~E~~-~~~~p~~~Yg~s 145 (314)
T COG0451 68 VIHLAAQSSVPDSNASDPAEFLDVNVDGTLNLLEAARAAGVKRFVFASSVSVVYGD-PPPLPIDEDL-GPPRPLNPYGVS 145 (314)
T ss_pred EEEccccCchhhhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCCCceECCC-CCCCCccccc-CCCCCCCHHHHH
Confidence 999999433222 3557899999999999999999999999999998888755 2322445542 346777799999
Q ss_pred HHHHHHHHHHHhCCCCceEEEEecCCcccCCCCC-----ChHHHHHHHHcCCC-eEEecCCCceeecccHHHHHHHHHHH
Q 047227 163 KAEGEALVIKANGTNGLLTCCIRPSSIFGPGDRL-----LVPSLVAAARAGKS-KFIIGDGNNVYDFTYVANVAHAHICA 236 (485)
Q Consensus 163 K~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~~-----~~~~~~~~~~~g~~-~~~~g~g~~~~~~i~v~D~a~a~~~~ 236 (485)
|..+|+.++.+.+.++++++++||+++|||++.. ....++..+..+.+ +...+++...++++|++|++++++.+
T Consensus 146 K~~~E~~~~~~~~~~~~~~~ilR~~~vyGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~ 225 (314)
T COG0451 146 KLAAEQLLRAYARLYGLPVVILRPFNVYGPGDKPDLSSGVVSAFIRQLLKGEPIIVIGGDGSQTRDFVYVDDVADALLLA 225 (314)
T ss_pred HHHHHHHHHHHHHHhCCCeEEEeeeeeeCCCCCCCCCcCcHHHHHHHHHhCCCcceEeCCCceeEeeEeHHHHHHHHHHH
Confidence 9999999999988788999999999999999764 34455666777776 66777888999999999999999999
Q ss_pred HHHhccccchhhccCCcEEEeeCCC-CccHHHHHHHHHHHcCCCCCC-ccCCHHHHHHHHHHHHHHHHHhCCCCCCCCCC
Q 047227 237 ERALASEVTVAEKAAGQAYFVTNME-SIKFWEFVSLILEGLGYQRPR-IKIPAFVMMPIAHMVELTYRLLGPYGMKVPQL 314 (485)
Q Consensus 237 ~~~~~~~~~~~~~~~g~~ynv~~~~-~~t~~el~~~i~~~~g~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 314 (485)
+++ + ..+ .||+++++ +.+++|+++.+.+.+|.+.+. ...+.
T Consensus 226 ~~~--------~-~~~-~~ni~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~--------------------------- 268 (314)
T COG0451 226 LEN--------P-DGG-VFNIGSGTAEITVRELAEAVAEAVGSKAPLIVYIPL--------------------------- 268 (314)
T ss_pred HhC--------C-CCc-EEEeCCCCCcEEHHHHHHHHHHHhCCCCcceeecCC---------------------------
Confidence 873 1 222 99999997 999999999999999987553 11110
Q ss_pred CHHHHHhhccceeeehhhHHhhcCCCCCCChHHHHHHHHHHHHHhH
Q 047227 315 TPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSYSHLR 360 (485)
Q Consensus 315 ~~~~~~~~~~~~~~d~~ka~~~lG~~p~~~l~e~i~~~~~~~~~~~ 360 (485)
...........+|.+|+++.|||+|..++++++.++++|+....
T Consensus 269 --~~~~~~~~~~~~~~~~~~~~lg~~p~~~~~~~i~~~~~~~~~~~ 312 (314)
T COG0451 269 --GRRGDLREGKLLDISKARAALGWEPKVSLEEGLADTLEWLLKKL 312 (314)
T ss_pred --CCCCcccccccCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhh
Confidence 00111223456799999999999999999999999999997643
|
|
| >PLN02989 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-38 Score=312.72 Aligned_cols=304 Identities=22% Similarity=0.274 Sum_probs=222.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCCCE
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGAEV 86 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~d~ 86 (485)
+|++|||||+||||+++++.|+++| ++|+++.|........ . .........++++++.+|++|.+++.++++++|+
T Consensus 5 ~k~vlVtG~~G~IG~~l~~~L~~~G-~~V~~~~r~~~~~~~~-~--~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~ 80 (325)
T PLN02989 5 GKVVCVTGASGYIASWIVKLLLFRG-YTINATVRDPKDRKKT-D--HLLALDGAKERLKLFKADLLDEGSFELAIDGCET 80 (325)
T ss_pred CCEEEEECCchHHHHHHHHHHHHCC-CEEEEEEcCCcchhhH-H--HHHhccCCCCceEEEeCCCCCchHHHHHHcCCCE
Confidence 5899999999999999999999999 5888877764321100 0 0000000124688999999999999999999999
Q ss_pred EEEcCCCCC---CCCchhhhHHHHHHHHHHHHHHHHhc-CCCEEEEecCccccccCCC---CcCCCCCCCCCCC----CC
Q 047227 87 VFHMAAPNS---SINNHKLHHSVNVEGTKNVIDACAEL-KVKRLIYTSSPSVVFDGVH---GIINGNEALPYPP----KH 155 (485)
Q Consensus 87 Vih~aa~~~---~~~~~~~~~~~nv~~t~~ll~a~~~~-~v~r~V~~SS~~vy~~~~~---~~~~~~e~~~~~~----~~ 155 (485)
|||+|+... ...++...+++|+.++.+++++|.+. ++++||++||.++|++... ...+.+|+.+... .+
T Consensus 81 vih~A~~~~~~~~~~~~~~~~~~n~~g~~~ll~a~~~~~~~~~iv~~SS~~~~~~~~~~~~~~~~~~E~~~~~p~~~~~~ 160 (325)
T PLN02989 81 VFHTASPVAITVKTDPQVELINPAVNGTINVLRTCTKVSSVKRVILTSSMAAVLAPETKLGPNDVVDETFFTNPSFAEER 160 (325)
T ss_pred EEEeCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHcCCceEEEEecchhheecCCccCCCCCccCcCCCCchhHhccc
Confidence 999999422 23455678899999999999999985 5789999999988764321 1223455544211 23
Q ss_pred CchHHHHHHHHHHHHHHHhCCCCceEEEEecCCcccCCCCC---ChHHHHHHHHcCCCeEEecCCCceeecccHHHHHHH
Q 047227 156 NDFYSATKAEGEALVIKANGTNGLLTCCIRPSSIFGPGDRL---LVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHA 232 (485)
Q Consensus 156 ~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~~---~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~D~a~a 232 (485)
.++|+.+|..+|++++.+.+.++++++++||+++|||+... +...++..+..++... + .+.++|+|++|+|++
T Consensus 161 ~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilR~~~vyGp~~~~~~~~~~~~i~~~~~~~~~~--~--~~~r~~i~v~Dva~a 236 (325)
T PLN02989 161 KQWYVLSKTLAEDAAWRFAKDNEIDLIVLNPGLVTGPILQPTLNFSVAVIVELMKGKNPF--N--TTHHRFVDVRDVALA 236 (325)
T ss_pred ccchHHHHHHHHHHHHHHHHHcCCeEEEEcCCceeCCCCCCCCCchHHHHHHHHcCCCCC--C--CcCcCeeEHHHHHHH
Confidence 46899999999999999988889999999999999998642 4445555566665432 2 356899999999999
Q ss_pred HHHHHHHhccccchhhccCCcEEEeeCCCCccHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCCCCC
Q 047227 233 HICAERALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELTYRLLGPYGMKVP 312 (485)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~~t~~el~~~i~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p 312 (485)
++.+++. + ..++.||++ ++.+|+.|+++.+.+.++.. . +..+ ....+
T Consensus 237 ~~~~l~~--------~-~~~~~~ni~-~~~~s~~ei~~~i~~~~~~~-~-~~~~---------------------~~~~~ 283 (325)
T PLN02989 237 HVKALET--------P-SANGRYIID-GPVVTIKDIENVLREFFPDL-C-IADR---------------------NEDIT 283 (325)
T ss_pred HHHHhcC--------c-ccCceEEEe-cCCCCHHHHHHHHHHHCCCC-C-CCCC---------------------CCCcc
Confidence 9988763 1 124589995 56899999999999998631 1 1000 00000
Q ss_pred CCCHHHHHhhccceeeehhhHHhhcCCCCCCChHHHHHHHHHHHHHh
Q 047227 313 QLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSYSHL 359 (485)
Q Consensus 313 ~~~~~~~~~~~~~~~~d~~ka~~~lG~~p~~~l~e~i~~~~~~~~~~ 359 (485)
..-...+..|++|+++ |||.|.++++|+|+++++||++.
T Consensus 284 -------~~~~~~~~~~~~k~~~-lg~~p~~~l~~gi~~~~~~~~~~ 322 (325)
T PLN02989 284 -------ELNSVTFNVCLDKVKS-LGIIEFTPTETSLRDTVLSLKEK 322 (325)
T ss_pred -------cccccCcCCCHHHHHH-cCCCCCCCHHHHHHHHHHHHHHh
Confidence 0001133568999887 99999999999999999999764
|
|
| >PLN02662 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-38 Score=312.40 Aligned_cols=303 Identities=25% Similarity=0.302 Sum_probs=219.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCCC
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGAE 85 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~d 85 (485)
++|+||||||+||||++++++|+++| ++|++++|........ . .........++++++.+|++|++++.++++++|
T Consensus 3 ~~~~ilVtGatGfIG~~l~~~L~~~g-~~V~~~~r~~~~~~~~--~-~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d 78 (322)
T PLN02662 3 EGKVVCVTGASGYIASWLVKLLLQRG-YTVKATVRDPNDPKKT--E-HLLALDGAKERLHLFKANLLEEGSFDSVVDGCE 78 (322)
T ss_pred CCCEEEEECChHHHHHHHHHHHHHCC-CEEEEEEcCCCchhhH--H-HHHhccCCCCceEEEeccccCcchHHHHHcCCC
Confidence 46899999999999999999999999 5898888764311000 0 000000012478999999999999999999999
Q ss_pred EEEEcCCCCC-CCCchh-hhHHHHHHHHHHHHHHHHhc-CCCEEEEecCccc--cccCCC-CcCCCCCCCCC-C---CCC
Q 047227 86 VVFHMAAPNS-SINNHK-LHHSVNVEGTKNVIDACAEL-KVKRLIYTSSPSV--VFDGVH-GIINGNEALPY-P---PKH 155 (485)
Q Consensus 86 ~Vih~aa~~~-~~~~~~-~~~~~nv~~t~~ll~a~~~~-~v~r~V~~SS~~v--y~~~~~-~~~~~~e~~~~-~---~~~ 155 (485)
+|||+|++.. ...++. .++++|+.++.+++++|++. +++||||+||.++ |++... ...+.+|+.+. | ...
T Consensus 79 ~Vih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~~~v~~SS~~~~~y~~~~~~~~~~~~E~~~~~p~~~~~~ 158 (322)
T PLN02662 79 GVFHTASPFYHDVTDPQAELIDPAVKGTLNVLRSCAKVPSVKRVVVTSSMAAVAYNGKPLTPDVVVDETWFSDPAFCEES 158 (322)
T ss_pred EEEEeCCcccCCCCChHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEccCHHHhcCCCcCCCCCCcCCcccCCChhHhhcc
Confidence 9999999533 233443 78899999999999999988 8999999999874 543221 11234444332 1 112
Q ss_pred CchHHHHHHHHHHHHHHHhCCCCceEEEEecCCcccCCCCC---ChHHHHHHHHcCCCeEEecCCCceeecccHHHHHHH
Q 047227 156 NDFYSATKAEGEALVIKANGTNGLLTCCIRPSSIFGPGDRL---LVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHA 232 (485)
Q Consensus 156 ~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~~---~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~D~a~a 232 (485)
.+.|+.+|..+|++++.+.++++++++++||+++|||+... ....++..+..|+.. .+++.++|+|++|+|++
T Consensus 159 ~~~Y~~sK~~~E~~~~~~~~~~~~~~~~lRp~~v~Gp~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~i~v~Dva~a 234 (322)
T PLN02662 159 KLWYVLSKTLAEEAAWKFAKENGIDMVTINPAMVIGPLLQPTLNTSAEAILNLINGAQT----FPNASYRWVDVRDVANA 234 (322)
T ss_pred cchHHHHHHHHHHHHHHHHHHcCCcEEEEeCCcccCCCCCCCCCchHHHHHHHhcCCcc----CCCCCcCeEEHHHHHHH
Confidence 36899999999999999888889999999999999997542 334445555555542 23467999999999999
Q ss_pred HHHHHHHhccccchhhccCCcEEEeeCCCCccHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCCCCC
Q 047227 233 HICAERALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELTYRLLGPYGMKVP 312 (485)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~~t~~el~~~i~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p 312 (485)
++.+++. +.. ++.||++ ++++++.|+++.+.+.++.. .+|.. ..+
T Consensus 235 ~~~~~~~--------~~~-~~~~~~~-g~~~s~~e~~~~i~~~~~~~----~~~~~---------------------~~~ 279 (322)
T PLN02662 235 HIQAFEI--------PSA-SGRYCLV-ERVVHYSEVVKILHELYPTL----QLPEK---------------------CAD 279 (322)
T ss_pred HHHHhcC--------cCc-CCcEEEe-CCCCCHHHHHHHHHHHCCCC----CCCCC---------------------CCC
Confidence 9998763 112 3478887 47899999999999987631 11110 000
Q ss_pred CCCHHHHHhhccceeeehhhHHhhcCCCCCCChHHHHHHHHHHHHHh
Q 047227 313 QLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSYSHL 359 (485)
Q Consensus 313 ~~~~~~~~~~~~~~~~d~~ka~~~lG~~p~~~l~e~i~~~~~~~~~~ 359 (485)
..+ ......+|++|+++ |||+| .+++|+++++++||++.
T Consensus 280 -~~~-----~~~~~~~d~~k~~~-lg~~~-~~~~~~l~~~~~~~~~~ 318 (322)
T PLN02662 280 -DKP-----YVPTYQVSKEKAKS-LGIEF-IPLEVSLKDTVESLKEK 318 (322)
T ss_pred -ccc-----cccccccChHHHHH-hCCcc-ccHHHHHHHHHHHHHHc
Confidence 000 01124579999996 99997 59999999999999864
|
|
| >PLN02725 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-38 Score=311.06 Aligned_cols=283 Identities=22% Similarity=0.300 Sum_probs=219.5
Q ss_pred EEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc--CCCEEE
Q 047227 11 VVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ--GAEVVF 88 (485)
Q Consensus 11 LVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--~~d~Vi 88 (485)
|||||+||||++|++.|+++|+ .|+++.+. ..+|++|.+++.++++ ++|+||
T Consensus 1 lItGa~GfiG~~l~~~L~~~g~-~v~~~~~~-------------------------~~~Dl~~~~~l~~~~~~~~~d~Vi 54 (306)
T PLN02725 1 FVAGHRGLVGSAIVRKLEALGF-TNLVLRTH-------------------------KELDLTRQADVEAFFAKEKPTYVI 54 (306)
T ss_pred CcccCCCcccHHHHHHHHhCCC-cEEEeecc-------------------------ccCCCCCHHHHHHHHhccCCCEEE
Confidence 6999999999999999999995 55544321 1489999999999887 489999
Q ss_pred EcCCCCC----CCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCccccccCCCCcCCCCCCCC--CCCCCCc-hHHH
Q 047227 89 HMAAPNS----SINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVVFDGVHGIINGNEALP--YPPKHND-FYSA 161 (485)
Q Consensus 89 h~aa~~~----~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy~~~~~~~~~~~e~~~--~~~~~~~-~Y~~ 161 (485)
|+|+... ...++..+++.|+.++.+++++|++.+++||||+||..||++... .+.+|+.+ .+..|.+ .|+.
T Consensus 55 h~A~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~i~~SS~~vyg~~~~--~~~~E~~~~~~~~~p~~~~Y~~ 132 (306)
T PLN02725 55 LAAAKVGGIHANMTYPADFIRENLQIQTNVIDAAYRHGVKKLLFLGSSCIYPKFAP--QPIPETALLTGPPEPTNEWYAI 132 (306)
T ss_pred EeeeeecccchhhhCcHHHHHHHhHHHHHHHHHHHHcCCCeEEEeCceeecCCCCC--CCCCHHHhccCCCCCCcchHHH
Confidence 9998422 335677889999999999999999999999999999999975433 23444432 1334544 5999
Q ss_pred HHHHHHHHHHHHhCCCCceEEEEecCCcccCCCC------CChHHHHH----HHHcCCCeEE-ecCCCceeecccHHHHH
Q 047227 162 TKAEGEALVIKANGTNGLLTCCIRPSSIFGPGDR------LLVPSLVA----AARAGKSKFI-IGDGNNVYDFTYVANVA 230 (485)
Q Consensus 162 sK~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~------~~~~~~~~----~~~~g~~~~~-~g~g~~~~~~i~v~D~a 230 (485)
+|..+|++++.+.+.++++++++||+++|||++. ..++.++. ....+.++.+ +|++++.++|+|++|++
T Consensus 133 sK~~~e~~~~~~~~~~~~~~~~~R~~~vyG~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dv~ 212 (306)
T PLN02725 133 AKIAGIKMCQAYRIQYGWDAISGMPTNLYGPHDNFHPENSHVIPALIRRFHEAKANGAPEVVVWGSGSPLREFLHVDDLA 212 (306)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEecceeCCCCCCCCCCCcccHHHHHHHHHHhhcCCCeEEEcCCCCeeeccccHHHHH
Confidence 9999999999988888999999999999999753 23444443 3355666655 78899999999999999
Q ss_pred HHHHHHHHHhccccchhhccCCcEEEeeCCCCccHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCCC
Q 047227 231 HAHICAERALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELTYRLLGPYGMK 310 (485)
Q Consensus 231 ~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~~t~~el~~~i~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 310 (485)
++++.+++.. ..++.||+++++++++.|+++.+.+.+|.+......+.
T Consensus 213 ~~~~~~~~~~---------~~~~~~ni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~----------------------- 260 (306)
T PLN02725 213 DAVVFLMRRY---------SGAEHVNVGSGDEVTIKELAELVKEVVGFEGELVWDTS----------------------- 260 (306)
T ss_pred HHHHHHHhcc---------ccCcceEeCCCCcccHHHHHHHHHHHhCCCCceeecCC-----------------------
Confidence 9999887631 23467899999999999999999999986543221110
Q ss_pred CCCCCHHHHHhhccceeeehhhHHhhcCCCCCCChHHHHHHHHHHHHHhHhc
Q 047227 311 VPQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSYSHLRAE 362 (485)
Q Consensus 311 ~p~~~~~~~~~~~~~~~~d~~ka~~~lG~~p~~~l~e~i~~~~~~~~~~~~~ 362 (485)
.+. ......+|++|+++ +||+|+++++|+++++++|++++.++
T Consensus 261 ~~~--------~~~~~~~d~~k~~~-lg~~p~~~~~~~l~~~~~~~~~~~~~ 303 (306)
T PLN02725 261 KPD--------GTPRKLMDSSKLRS-LGWDPKFSLKDGLQETYKWYLENYET 303 (306)
T ss_pred CCC--------cccccccCHHHHHH-hCCCCCCCHHHHHHHHHHHHHhhhhc
Confidence 000 00123579999975 89999999999999999999987665
|
|
| >PLN02986 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=308.92 Aligned_cols=303 Identities=24% Similarity=0.305 Sum_probs=219.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCCC
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGAE 85 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~d 85 (485)
.+++||||||+||||++++++|+++| ++|+++.|+....... .. .........+++++.+|++|++.+.++++++|
T Consensus 4 ~~~~vlVTGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~-~~--~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d 79 (322)
T PLN02986 4 GGKLVCVTGASGYIASWIVKLLLLRG-YTVKATVRDLTDRKKT-EH--LLALDGAKERLKLFKADLLEESSFEQAIEGCD 79 (322)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEECCCcchHHH-HH--HHhccCCCCceEEEecCCCCcchHHHHHhCCC
Confidence 36899999999999999999999999 5898877754321100 00 00000112468999999999999999999999
Q ss_pred EEEEcCCCCC-CCCch-hhhHHHHHHHHHHHHHHHHhc-CCCEEEEecCccccccCCC---CcCCCCCCCCCCC----CC
Q 047227 86 VVFHMAAPNS-SINNH-KLHHSVNVEGTKNVIDACAEL-KVKRLIYTSSPSVVFDGVH---GIINGNEALPYPP----KH 155 (485)
Q Consensus 86 ~Vih~aa~~~-~~~~~-~~~~~~nv~~t~~ll~a~~~~-~v~r~V~~SS~~vy~~~~~---~~~~~~e~~~~~~----~~ 155 (485)
+|||+|+... ...++ ...+++|+.|+.+++++|++. +++||||+||.++|+.+.. .....+|+.+... .+
T Consensus 80 ~vih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~~~v~rvV~~SS~~~~~~~~~~~~~~~~~~E~~~~~p~~~~~~ 159 (322)
T PLN02986 80 AVFHTASPVFFTVKDPQTELIDPALKGTINVLNTCKETPSVKRVILTSSTAAVLFRQPPIEANDVVDETFFSDPSLCRET 159 (322)
T ss_pred EEEEeCCCcCCCCCCchhhhhHHHHHHHHHHHHHHHhcCCccEEEEecchhheecCCccCCCCCCcCcccCCChHHhhcc
Confidence 9999999432 22233 356899999999999999986 6899999999887532221 1122344432211 34
Q ss_pred CchHHHHHHHHHHHHHHHhCCCCceEEEEecCCcccCCCCC---ChHHHHHHHHcCCCeEEecCCCceeecccHHHHHHH
Q 047227 156 NDFYSATKAEGEALVIKANGTNGLLTCCIRPSSIFGPGDRL---LVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHA 232 (485)
Q Consensus 156 ~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~~---~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~D~a~a 232 (485)
.+.|+.+|..+|.+++.+.++++++++++||+++|||+... ....++..+..|+.. ++ ++.++|+|++|+|++
T Consensus 160 ~~~Y~~sK~~aE~~~~~~~~~~~~~~~~lrp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~--~~--~~~~~~v~v~Dva~a 235 (322)
T PLN02986 160 KNWYPLSKILAENAAWEFAKDNGIDMVVLNPGFICGPLLQPTLNFSVELIVDFINGKNL--FN--NRFYRFVDVRDVALA 235 (322)
T ss_pred ccchHHHHHHHHHHHHHHHHHhCCeEEEEcccceeCCCCCCCCCccHHHHHHHHcCCCC--CC--CcCcceeEHHHHHHH
Confidence 67899999999999999988889999999999999997542 234455556666653 33 467899999999999
Q ss_pred HHHHHHHhccccchhhccCCcEEEeeCCCCccHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCCCCC
Q 047227 233 HICAERALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELTYRLLGPYGMKVP 312 (485)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~~t~~el~~~i~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p 312 (485)
++.+++. +.. ++.||++ ++++++.|+++.+.+.++. . .+|. ..+
T Consensus 236 ~~~al~~--------~~~-~~~yni~-~~~~s~~e~~~~i~~~~~~-~---~~~~----------------------~~~ 279 (322)
T PLN02986 236 HIKALET--------PSA-NGRYIID-GPIMSVNDIIDILRELFPD-L---CIAD----------------------TNE 279 (322)
T ss_pred HHHHhcC--------ccc-CCcEEEe-cCCCCHHHHHHHHHHHCCC-C---CCCC----------------------CCc
Confidence 9999873 212 3489995 5689999999999999862 1 1111 000
Q ss_pred CCCHHHHHhhccceeeehhhHHhhcCCCCCCChHHHHHHHHHHHHHh
Q 047227 313 QLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSYSHL 359 (485)
Q Consensus 313 ~~~~~~~~~~~~~~~~d~~ka~~~lG~~p~~~l~e~i~~~~~~~~~~ 359 (485)
. .. .......+|++|+++ |||+|+ +++|+++++++||.+.
T Consensus 280 ~---~~--~~~~~~~~d~~~~~~-lg~~~~-~l~e~~~~~~~~~~~~ 319 (322)
T PLN02986 280 E---SE--MNEMICKVCVEKVKN-LGVEFT-PMKSSLRDTILSLKEK 319 (322)
T ss_pred c---cc--ccccCCccCHHHHHH-cCCccc-CHHHHHHHHHHHHHHc
Confidence 0 00 000112369999876 999996 9999999999999874
|
|
| >PLN02650 dihydroflavonol-4-reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-38 Score=313.07 Aligned_cols=302 Identities=23% Similarity=0.248 Sum_probs=215.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhc----CCCeEEEEecCCCHHHHHHHhc
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALR----SGRAHYVSFDLRHKAQVLQALQ 82 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~----~~~v~~~~~Dl~d~~~l~~~~~ 82 (485)
.|+||||||+||||+++++.|+++| ++|++++|....... ...... ..+++++.+|++|.+.+.++++
T Consensus 5 ~k~iLVTGatGfIGs~l~~~L~~~G-~~V~~~~r~~~~~~~-------~~~~~~~~~~~~~~~~v~~Dl~d~~~~~~~~~ 76 (351)
T PLN02650 5 KETVCVTGASGFIGSWLVMRLLERG-YTVRATVRDPANVKK-------VKHLLDLPGATTRLTLWKADLAVEGSFDDAIR 76 (351)
T ss_pred CCEEEEeCCcHHHHHHHHHHHHHCC-CEEEEEEcCcchhHH-------HHHHHhccCCCCceEEEEecCCChhhHHHHHh
Confidence 4799999999999999999999999 589988876431110 111110 1358899999999999999999
Q ss_pred CCCEEEEcCCCCC-CCCch-hhhHHHHHHHHHHHHHHHHhcC-CCEEEEecCccccccCCCCcCCCCCCCC-------CC
Q 047227 83 GAEVVFHMAAPNS-SINNH-KLHHSVNVEGTKNVIDACAELK-VKRLIYTSSPSVVFDGVHGIINGNEALP-------YP 152 (485)
Q Consensus 83 ~~d~Vih~aa~~~-~~~~~-~~~~~~nv~~t~~ll~a~~~~~-v~r~V~~SS~~vy~~~~~~~~~~~e~~~-------~~ 152 (485)
++|+|||+|+... ...++ ...+++|+.++.+++++|++.+ ++||||+||.++|+.........+|+.+ .+
T Consensus 77 ~~d~ViH~A~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~~~~r~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~ 156 (351)
T PLN02650 77 GCTGVFHVATPMDFESKDPENEVIKPTVNGMLSIMKACAKAKTVRRIVFTSSAGTVNVEEHQKPVYDEDCWSDLDFCRRK 156 (351)
T ss_pred CCCEEEEeCCCCCCCCCCchhhhhhHHHHHHHHHHHHHHhcCCceEEEEecchhhcccCCCCCCccCcccCCchhhhhcc
Confidence 9999999999432 22233 4688999999999999999987 7899999999888643222111233221 01
Q ss_pred CCCCchHHHHHHHHHHHHHHHhCCCCceEEEEecCCcccCCCCCC-hHHHHHHH--HcCCCeEEecCCCceeecccHHHH
Q 047227 153 PKHNDFYSATKAEGEALVIKANGTNGLLTCCIRPSSIFGPGDRLL-VPSLVAAA--RAGKSKFIIGDGNNVYDFTYVANV 229 (485)
Q Consensus 153 ~~~~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~~~-~~~~~~~~--~~g~~~~~~g~g~~~~~~i~v~D~ 229 (485)
..+.++|+.||..+|.+++.+.+++|++++++||+++|||+.... .+.++..+ ..++.. ..+.. +.++|+||+|+
T Consensus 157 ~~~~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~r~~v~V~Dv 234 (351)
T PLN02650 157 KMTGWMYFVSKTLAEKAAWKYAAENGLDFISIIPTLVVGPFISTSMPPSLITALSLITGNEA-HYSII-KQGQFVHLDDL 234 (351)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHcCCeEEEECCCceECCCCCCCCCccHHHHHHHhcCCcc-ccCcC-CCcceeeHHHH
Confidence 234568999999999999999988999999999999999986432 22222221 233322 22222 34799999999
Q ss_pred HHHHHHHHHHhccccchhhccCCcEEEeeCCCCccHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCC
Q 047227 230 AHAHICAERALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELTYRLLGPYGM 309 (485)
Q Consensus 230 a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~~t~~el~~~i~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 309 (485)
|++++.+++. + ..++.| +++++++++.|+++.+.+.++.. .+|... .
T Consensus 235 a~a~~~~l~~--------~-~~~~~~-i~~~~~~s~~el~~~i~~~~~~~----~~~~~~-----------------~-- 281 (351)
T PLN02650 235 CNAHIFLFEH--------P-AAEGRY-ICSSHDATIHDLAKMLREKYPEY----NIPARF-----------------P-- 281 (351)
T ss_pred HHHHHHHhcC--------c-CcCceE-EecCCCcCHHHHHHHHHHhCccc----CCCCCC-----------------C--
Confidence 9999998763 1 223478 56668899999999999987621 111100 0
Q ss_pred CCCCCCHHHHHhhccceeeehhhHHhhcCCCCCCChHHHHHHHHHHHHHhH
Q 047227 310 KVPQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSYSHLR 360 (485)
Q Consensus 310 ~~p~~~~~~~~~~~~~~~~d~~ka~~~lG~~p~~~l~e~i~~~~~~~~~~~ 360 (485)
..+ . ......+|++|++ +|||+|+++++|+++++++||++..
T Consensus 282 ~~~----~----~~~~~~~d~~k~~-~lG~~p~~~l~egl~~~i~~~~~~~ 323 (351)
T PLN02650 282 GID----E----DLKSVEFSSKKLT-DLGFTFKYSLEDMFDGAIETCREKG 323 (351)
T ss_pred CcC----c----ccccccCChHHHH-HhCCCCCCCHHHHHHHHHHHHHHcC
Confidence 000 0 0012345888875 5999999999999999999998744
|
|
| >TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=307.59 Aligned_cols=294 Identities=20% Similarity=0.247 Sum_probs=223.1
Q ss_pred EEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc----CCC
Q 047227 10 CVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ----GAE 85 (485)
Q Consensus 10 iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~----~~d 85 (485)
|||||||||||+++++.|.++|+.+|.+++|..... . +.. .....+.+|+.+.+.+..+.+ ++|
T Consensus 1 ilItGatG~iG~~l~~~L~~~g~~~v~~~~~~~~~~-----~---~~~----~~~~~~~~d~~~~~~~~~~~~~~~~~~D 68 (314)
T TIGR02197 1 IIVTGGAGFIGSNLVKALNERGITDILVVDNLRDGH-----K---FLN----LADLVIADYIDKEDFLDRLEKGAFGKIE 68 (314)
T ss_pred CEEeCCcchhhHHHHHHHHHcCCceEEEEecCCCch-----h---hhh----hhheeeeccCcchhHHHHHHhhccCCCC
Confidence 699999999999999999999954788887654311 0 000 112356788888877777664 799
Q ss_pred EEEEcCCCC-CCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCccccccCCCCcCCCCCCCCCCCCCCchHHHHHH
Q 047227 86 VVFHMAAPN-SSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDFYSATKA 164 (485)
Q Consensus 86 ~Vih~aa~~-~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy~~~~~~~~~~~e~~~~~~~~~~~Y~~sK~ 164 (485)
+|||+|+.. ....++...+++|+.++.+++++|++.++ +|||+||+++|++.... .+|+.+ +..|.+.|+.+|.
T Consensus 69 ~vvh~A~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~-~~v~~SS~~vy~~~~~~---~~e~~~-~~~p~~~Y~~sK~ 143 (314)
T TIGR02197 69 AIFHQGACSDTTETDGEYMMENNYQYSKRLLDWCAEKGI-PFIYASSAATYGDGEAG---FREGRE-LERPLNVYGYSKF 143 (314)
T ss_pred EEEECccccCccccchHHHHHHHHHHHHHHHHHHHHhCC-cEEEEccHHhcCCCCCC---cccccC-cCCCCCHHHHHHH
Confidence 999999943 34456778899999999999999999987 89999999999754322 222222 2357889999999
Q ss_pred HHHHHHHHHhC--CCCceEEEEecCCcccCCCC------CChHHHHHHHHcCCCeEEe------cCCCceeecccHHHHH
Q 047227 165 EGEALVIKANG--TNGLLTCCIRPSSIFGPGDR------LLVPSLVAAARAGKSKFII------GDGNNVYDFTYVANVA 230 (485)
Q Consensus 165 ~~E~~~~~~~~--~~g~~~~ilRp~~v~Gp~~~------~~~~~~~~~~~~g~~~~~~------g~g~~~~~~i~v~D~a 230 (485)
.+|.+++++.. ..+++++++||+++|||++. .++..++..+..++++.++ ++|++.++|+|++|++
T Consensus 144 ~~e~~~~~~~~~~~~~~~~~~lR~~~vyG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~D~a 223 (314)
T TIGR02197 144 LFDQYVRRRVLPEALSAQVVGLRYFNVYGPREYHKGKMASVAFHLFNQIKAGGNVKLFKSSEGFKDGEQLRDFVYVKDVV 223 (314)
T ss_pred HHHHHHHHHhHhhccCCceEEEEEeeccCCCCCCCCCcccHHHHHHHHHhcCCCeEEecCccccCCCCceeeeEEHHHHH
Confidence 99999987542 24578999999999999853 2355677777888877665 4677889999999999
Q ss_pred HHHHHHHHHhccccchhhccCCcEEEeeCCCCccHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCCC
Q 047227 231 HAHICAERALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELTYRLLGPYGMK 310 (485)
Q Consensus 231 ~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~~t~~el~~~i~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 310 (485)
+++..+++. ..+++||+++++++|++|+++.+.+.+|.+......|.
T Consensus 224 ~~i~~~~~~----------~~~~~yni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~----------------------- 270 (314)
T TIGR02197 224 DVNLWLLEN----------GVSGIFNLGTGRARSFNDLADAVFKALGKDEKIEYIPM----------------------- 270 (314)
T ss_pred HHHHHHHhc----------ccCceEEcCCCCCccHHHHHHHHHHHhCCCCcceeccC-----------------------
Confidence 999999873 23569999999999999999999999997643221111
Q ss_pred CCCCCHHHHHhhccceeeehhhHHhhcCCCCCCChHHHHHHHHHHHH
Q 047227 311 VPQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSYS 357 (485)
Q Consensus 311 ~p~~~~~~~~~~~~~~~~d~~ka~~~lG~~p~~~l~e~i~~~~~~~~ 357 (485)
|... ..........|++|+++.+||+|+++++|+++++++|+.
T Consensus 271 -~~~~---~~~~~~~~~~~~~k~~~~l~~~p~~~l~~~l~~~~~~~~ 313 (314)
T TIGR02197 271 -PEAL---RGKYQYFTQADITKLRAAGYYGPFTTLEEGVKDYVQWLL 313 (314)
T ss_pred -cccc---ccccccccccchHHHHHhcCCCCcccHHHHHHHHHHHHh
Confidence 1000 000111234699999999999999999999999999985
|
This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370). |
| >PLN02896 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-37 Score=311.81 Aligned_cols=308 Identities=22% Similarity=0.293 Sum_probs=217.3
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCC
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGA 84 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 84 (485)
..+|+||||||+||||++++++|+++| ++|++++|...... ..........+++++.+|++|.+++.++++++
T Consensus 8 ~~~~~vLVtG~~GfIG~~l~~~L~~~G-~~V~~~~r~~~~~~------~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 80 (353)
T PLN02896 8 SATGTYCVTGATGYIGSWLVKLLLQRG-YTVHATLRDPAKSL------HLLSKWKEGDRLRLFRADLQEEGSFDEAVKGC 80 (353)
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCChHHHH------HHHHhhccCCeEEEEECCCCCHHHHHHHHcCC
Confidence 457899999999999999999999999 68988877543110 01111112356889999999999999999999
Q ss_pred CEEEEcCCCCC-----CCCchhhhH-----HHHHHHHHHHHHHHHhcC-CCEEEEecCccccccCCCC---cCCCCCCCC
Q 047227 85 EVVFHMAAPNS-----SINNHKLHH-----SVNVEGTKNVIDACAELK-VKRLIYTSSPSVVFDGVHG---IINGNEALP 150 (485)
Q Consensus 85 d~Vih~aa~~~-----~~~~~~~~~-----~~nv~~t~~ll~a~~~~~-v~r~V~~SS~~vy~~~~~~---~~~~~e~~~ 150 (485)
|+|||+|+... ...++..++ +.|+.++.+++++|++.+ +++|||+||.++|+..... ..+.+|+.+
T Consensus 81 d~Vih~A~~~~~~~~~~~~~~~~~~~~n~~~~~~~g~~~ll~~~~~~~~~~~~v~~SS~~vyg~~~~~~~~~~~~~E~~~ 160 (353)
T PLN02896 81 DGVFHVAASMEFDVSSDHNNIEEYVQSKVIDPAIKGTLNVLKSCLKSKTVKRVVFTSSISTLTAKDSNGRWRAVVDETCQ 160 (353)
T ss_pred CEEEECCccccCCccccccchhhhhhHHhHHHHHHHHHHHHHHHHhcCCccEEEEEechhhccccccCCCCCCccCcccC
Confidence 99999999432 223444443 445699999999999885 8999999999999743211 122344322
Q ss_pred CC-------CCCCchHHHHHHHHHHHHHHHhCCCCceEEEEecCCcccCCCCCChHHHHHHHH---cCCCeE--EecC--
Q 047227 151 YP-------PKHNDFYSATKAEGEALVIKANGTNGLLTCCIRPSSIFGPGDRLLVPSLVAAAR---AGKSKF--IIGD-- 216 (485)
Q Consensus 151 ~~-------~~~~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~---~g~~~~--~~g~-- 216 (485)
.| ..+.++|+.||.++|++++.+++.++++++++||+++|||+....++.++..+. .|.... ..+.
T Consensus 161 ~p~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~~lR~~~vyGp~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 240 (353)
T PLN02896 161 TPIDHVWNTKASGWVYVLSKLLTEEAAFKYAKENGIDLVSVITTTVAGPFLTPSVPSSIQVLLSPITGDSKLFSILSAVN 240 (353)
T ss_pred CcHHHhhccCCCCccHHHHHHHHHHHHHHHHHHcCCeEEEEcCCcccCCCcCCCCCchHHHHHHHhcCCccccccccccc
Confidence 11 234568999999999999999988899999999999999986543444433332 343221 1111
Q ss_pred -CCceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCCCccHHHHHHHHHHHcCCCCCCccCCHHHHHHHHH
Q 047227 217 -GNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAH 295 (485)
Q Consensus 217 -g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~~t~~el~~~i~~~~g~~~~~~~~p~~~~~~~~~ 295 (485)
....++|+|++|+|++++.+++. + ..++.|++ +++++++.|+++.+.+.++.....+....
T Consensus 241 ~~~~~~dfi~v~Dva~a~~~~l~~--------~-~~~~~~~~-~~~~~s~~el~~~i~~~~~~~~~~~~~~~-------- 302 (353)
T PLN02896 241 SRMGSIALVHIEDICDAHIFLMEQ--------T-KAEGRYIC-CVDSYDMSELINHLSKEYPCSNIQVRLDE-------- 302 (353)
T ss_pred cccCceeEEeHHHHHHHHHHHHhC--------C-CcCccEEe-cCCCCCHHHHHHHHHHhCCCCCccccccc--------
Confidence 11246999999999999998763 1 22346854 56789999999999998863211111000
Q ss_pred HHHHHHHHhCCCCCCCCCCCHHHHHhhccceeeehhhHHhhcCCCCCCChHHHHHHHHHHHHHhHh
Q 047227 296 MVELTYRLLGPYGMKVPQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSYSHLRA 361 (485)
Q Consensus 296 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~d~~ka~~~lG~~p~~~l~e~i~~~~~~~~~~~~ 361 (485)
..+ . ......|.+|+++ |||+|+++++++|+++++||+++..
T Consensus 303 --------------~~~----~-----~~~~~~~~~~~~~-lGw~p~~~l~~~i~~~~~~~~~~~~ 344 (353)
T PLN02896 303 --------------EKR----G-----SIPSEISSKKLRD-LGFEYKYGIEEIIDQTIDCCVDHGF 344 (353)
T ss_pred --------------ccc----C-----ccccccCHHHHHH-cCCCccCCHHHHHHHHHHHHHHCCC
Confidence 000 0 0112358888875 9999999999999999999987554
|
|
| >KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-37 Score=289.42 Aligned_cols=310 Identities=26% Similarity=0.278 Sum_probs=224.0
Q ss_pred CCCCCCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhh-cCCCeEEEEecCCCHHHHHH
Q 047227 1 MSGEENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEAL-RSGRAHYVSFDLRHKAQVLQ 79 (485)
Q Consensus 1 M~~~~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~ 79 (485)
|... .+|+|+||||+||||+|+++.|+.+| |.|+++.|++... +...++.+.. ..++...+.+|+.|++++.+
T Consensus 1 m~~~-~~~~VcVTGAsGfIgswivk~LL~rG-Y~V~gtVR~~~~~----k~~~~L~~l~~a~~~l~l~~aDL~d~~sf~~ 74 (327)
T KOG1502|consen 1 MDQD-EGKKVCVTGASGFIGSWIVKLLLSRG-YTVRGTVRDPEDE----KKTEHLRKLEGAKERLKLFKADLLDEGSFDK 74 (327)
T ss_pred CCCC-CCcEEEEeCCchHHHHHHHHHHHhCC-CEEEEEEcCcchh----hhHHHHHhcccCcccceEEeccccccchHHH
Confidence 4443 56899999999999999999999999 6999999987631 1111222222 13468999999999999999
Q ss_pred HhcCCCEEEEcCCCCCCCC--chhhhHHHHHHHHHHHHHHHHhcC-CCEEEEecCccccccC---CCCcCCCCCCCCCCC
Q 047227 80 ALQGAEVVFHMAAPNSSIN--NHKLHHSVNVEGTKNVIDACAELK-VKRLIYTSSPSVVFDG---VHGIINGNEALPYPP 153 (485)
Q Consensus 80 ~~~~~d~Vih~aa~~~~~~--~~~~~~~~nv~~t~~ll~a~~~~~-v~r~V~~SS~~vy~~~---~~~~~~~~e~~~~~~ 153 (485)
+++|+|.|||+|.+..... .+.+..+.++.||.|++++|++.. |||+||+||+++.... ..+....+|+...+.
T Consensus 75 ai~gcdgVfH~Asp~~~~~~~~e~~li~pav~Gt~nVL~ac~~~~sVkrvV~TSS~aAv~~~~~~~~~~~vvdE~~wsd~ 154 (327)
T KOG1502|consen 75 AIDGCDGVFHTASPVDFDLEDPEKELIDPAVKGTKNVLEACKKTKSVKRVVYTSSTAAVRYNGPNIGENSVVDEESWSDL 154 (327)
T ss_pred HHhCCCEEEEeCccCCCCCCCcHHhhhhHHHHHHHHHHHHHhccCCcceEEEeccHHHhccCCcCCCCCcccccccCCcH
Confidence 9999999999999654332 244789999999999999999999 9999999998887532 222223344432111
Q ss_pred ----CCCchHHHHHHHHHHHHHHHhCCCCceEEEEecCCcccCCCCC---ChHHHHHHHHcCCCeEEecCCCceeecccH
Q 047227 154 ----KHNDFYSATKAEGEALVIKANGTNGLLTCCIRPSSIFGPGDRL---LVPSLVAAARAGKSKFIIGDGNNVYDFTYV 226 (485)
Q Consensus 154 ----~~~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~~---~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v 226 (485)
.-...|..||..+|+..++++++.+++.+.+.|+.|+||.... ..........+|..-.. .+....|+||
T Consensus 155 ~~~~~~~~~Y~~sK~lAEkaAw~fa~e~~~~lv~inP~lV~GP~l~~~l~~s~~~~l~~i~G~~~~~---~n~~~~~VdV 231 (327)
T KOG1502|consen 155 DFCRCKKLWYALSKTLAEKAAWEFAKENGLDLVTINPGLVFGPGLQPSLNSSLNALLKLIKGLAETY---PNFWLAFVDV 231 (327)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHhCCccEEEecCCceECCCcccccchhHHHHHHHHhcccccC---CCCceeeEeH
Confidence 1124799999999999999999999999999999999998654 22334444555643222 2244569999
Q ss_pred HHHHHHHHHHHHHhccccchhhccCCcEEEeeCCCCccHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhCC
Q 047227 227 ANVAHAHICAERALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELTYRLLGP 306 (485)
Q Consensus 227 ~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~~t~~el~~~i~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 306 (485)
+|+|.|++.+++. +... +.|.+.+ +..++.|+++.+.+.++.-. +|..
T Consensus 232 rDVA~AHv~a~E~--------~~a~-GRyic~~-~~~~~~ei~~~l~~~~P~~~----ip~~------------------ 279 (327)
T KOG1502|consen 232 RDVALAHVLALEK--------PSAK-GRYICVG-EVVSIKEIADILRELFPDYP----IPKK------------------ 279 (327)
T ss_pred HHHHHHHHHHHcC--------cccC-ceEEEec-CcccHHHHHHHHHHhCCCCC----CCCC------------------
Confidence 9999999999983 3333 5687766 44559999999888775322 2221
Q ss_pred CCCCCCCCCHHHHHhhccceeeehhhHHhhcCCCCCCChHHHHHHHHHHHHHhH
Q 047227 307 YGMKVPQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSYSHLR 360 (485)
Q Consensus 307 ~~~~~p~~~~~~~~~~~~~~~~d~~ka~~~lG~~p~~~l~e~i~~~~~~~~~~~ 360 (485)
.+ ...........++++|+++..|++. .+++|++.++++++++.+
T Consensus 280 ----~~----~~~~~~~~~~~~~~~k~k~lg~~~~-~~l~e~~~dt~~sl~~~~ 324 (327)
T KOG1502|consen 280 ----NA----EEHEGFLTSFKVSSEKLKSLGGFKF-RPLEETLSDTVESLREKG 324 (327)
T ss_pred ----CC----ccccccccccccccHHHHhccccee-cChHHHHHHHHHHHHHhc
Confidence 00 0000000112479999999555775 599999999999998754
|
|
| >PLN00016 RNA-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-36 Score=305.15 Aligned_cols=299 Identities=20% Similarity=0.223 Sum_probs=220.1
Q ss_pred CCCEEEEE----cCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHh
Q 047227 6 NERLCVVT----GGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQAL 81 (485)
Q Consensus 6 ~~~~iLVt----GgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~ 81 (485)
++|+|||| |||||||+++++.|+++| ++|++++|...............-..+...+++++.+|+.| +.+++
T Consensus 51 ~~~~VLVt~~~~GatG~iG~~lv~~L~~~G-~~V~~l~R~~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d---~~~~~ 126 (378)
T PLN00016 51 EKKKVLIVNTNSGGHAFIGFYLAKELVKAG-HEVTLFTRGKEPSQKMKKEPFSRFSELSSAGVKTVWGDPAD---VKSKV 126 (378)
T ss_pred ccceEEEEeccCCCceeEhHHHHHHHHHCC-CEEEEEecCCcchhhhccCchhhhhHhhhcCceEEEecHHH---HHhhh
Confidence 45789999 999999999999999999 59999998764311110000000011223468999999887 33444
Q ss_pred --cCCCEEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCccccccCCCCcCCCCCCCCCCCCCCchH
Q 047227 82 --QGAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDFY 159 (485)
Q Consensus 82 --~~~d~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy~~~~~~~~~~~e~~~~~~~~~~~Y 159 (485)
.++|+|||+++. +..++.+++++|++.|++||||+||.++|++.... +..|..+ ..|.
T Consensus 127 ~~~~~d~Vi~~~~~-------------~~~~~~~ll~aa~~~gvkr~V~~SS~~vyg~~~~~--p~~E~~~--~~p~--- 186 (378)
T PLN00016 127 AGAGFDVVYDNNGK-------------DLDEVEPVADWAKSPGLKQFLFCSSAGVYKKSDEP--PHVEGDA--VKPK--- 186 (378)
T ss_pred ccCCccEEEeCCCC-------------CHHHHHHHHHHHHHcCCCEEEEEccHhhcCCCCCC--CCCCCCc--CCCc---
Confidence 479999999752 24578899999999999999999999999754322 2333322 2232
Q ss_pred HHHHHHHHHHHHHHhCCCCceEEEEecCCcccCCCCC-ChHHHHHHHHcCCCeEEecCCCceeecccHHHHHHHHHHHHH
Q 047227 160 SATKAEGEALVIKANGTNGLLTCCIRPSSIFGPGDRL-LVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICAER 238 (485)
Q Consensus 160 ~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~~-~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~D~a~a~~~~~~ 238 (485)
. +|..+|.++++ .+++++++||+++|||+... ....++..+..++++.++|+|++.++|+|++|+|++++.+++
T Consensus 187 ~-sK~~~E~~l~~----~~l~~~ilRp~~vyG~~~~~~~~~~~~~~~~~~~~i~~~g~g~~~~~~i~v~Dva~ai~~~l~ 261 (378)
T PLN00016 187 A-GHLEVEAYLQK----LGVNWTSFRPQYIYGPGNNKDCEEWFFDRLVRGRPVPIPGSGIQLTQLGHVKDLASMFALVVG 261 (378)
T ss_pred c-hHHHHHHHHHH----cCCCeEEEeceeEECCCCCCchHHHHHHHHHcCCceeecCCCCeeeceecHHHHHHHHHHHhc
Confidence 2 79999998875 58999999999999997653 445677788889888888999999999999999999999877
Q ss_pred HhccccchhhccCCcEEEeeCCCCccHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCCCCCCCCHHH
Q 047227 239 ALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELTYRLLGPYGMKVPQLTPSR 318 (485)
Q Consensus 239 ~~~~~~~~~~~~~g~~ynv~~~~~~t~~el~~~i~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 318 (485)
. +...+++||+++++.+|+.|+++.+.+.+|.+...+..+.... ++ +. ....|
T Consensus 262 ~--------~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~i~~~~~~~~-------~~-----~~-~~~~p------ 314 (378)
T PLN00016 262 N--------PKAAGQIFNIVSDRAVTFDGMAKACAKAAGFPEEIVHYDPKAV-------GF-----GA-KKAFP------ 314 (378)
T ss_pred C--------ccccCCEEEecCCCccCHHHHHHHHHHHhCCCCceeecCcccc-------Cc-----cc-ccccc------
Confidence 3 2245789999999999999999999999998765443332110 00 00 00011
Q ss_pred HHhhccceeeehhhHHhhcCCCCCCChHHHHHHHHHHHHHhHhc
Q 047227 319 VRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSYSHLRAE 362 (485)
Q Consensus 319 ~~~~~~~~~~d~~ka~~~lG~~p~~~l~e~i~~~~~~~~~~~~~ 362 (485)
........|++|++++|||+|+++++|+++++++||+..+..
T Consensus 315 --~~~~~~~~d~~ka~~~LGw~p~~~l~egl~~~~~~~~~~~~~ 356 (378)
T PLN00016 315 --FRDQHFFASPRKAKEELGWTPKFDLVEDLKDRYELYFGRGRD 356 (378)
T ss_pred --ccccccccCHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 001123459999999999999999999999999999886643
|
|
| >TIGR01179 galE UDP-glucose-4-epimerase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=294.00 Aligned_cols=302 Identities=25% Similarity=0.261 Sum_probs=228.0
Q ss_pred EEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc--CCCE
Q 047227 9 LCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ--GAEV 86 (485)
Q Consensus 9 ~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--~~d~ 86 (485)
+||||||+|+||+++++.|+++| ++|+++++........ ........+++++.+|+.|++++.++++ ++|+
T Consensus 1 kvlV~GatG~iG~~l~~~l~~~g-~~V~~~~~~~~~~~~~------~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~d~ 73 (328)
T TIGR01179 1 KILVTGGAGYIGSHTVRQLLESG-HEVVVLDNLSNGSPEA------LKRGERITRVTFVEGDLRDRELLDRLFEEHKIDA 73 (328)
T ss_pred CEEEeCCCCHHHHHHHHHHHhCC-CeEEEEeCCCccchhh------hhhhccccceEEEECCCCCHHHHHHHHHhCCCcE
Confidence 58999999999999999999999 5888876543211110 0000111257889999999999999986 5999
Q ss_pred EEEcCCCC---CCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCccccccCCCCcCCCCCCCCCCCCCCchHHHHH
Q 047227 87 VFHMAAPN---SSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDFYSATK 163 (485)
Q Consensus 87 Vih~aa~~---~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy~~~~~~~~~~~e~~~~~~~~~~~Y~~sK 163 (485)
|||+|+.. ....++...++.|+.++.+++++|++.+++++|++||.++|+..... +.+|+.+ ..|.+.|+.+|
T Consensus 74 vv~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~ss~~~~g~~~~~--~~~e~~~--~~~~~~y~~sK 149 (328)
T TIGR01179 74 VIHFAGLIAVGESVQDPLKYYRNNVVNTLNLLEAMQQTGVKKFIFSSSAAVYGEPSSI--PISEDSP--LGPINPYGRSK 149 (328)
T ss_pred EEECccccCcchhhcCchhhhhhhHHHHHHHHHHHHhcCCCEEEEecchhhcCCCCCC--CccccCC--CCCCCchHHHH
Confidence 99999932 23345667889999999999999999999999999999998643322 3344443 45788999999
Q ss_pred HHHHHHHHHHhCC-CCceEEEEecCCcccCCCC-----------CChHHHHHHHH-cCCCeEEec------CCCceeecc
Q 047227 164 AEGEALVIKANGT-NGLLTCCIRPSSIFGPGDR-----------LLVPSLVAAAR-AGKSKFIIG------DGNNVYDFT 224 (485)
Q Consensus 164 ~~~E~~~~~~~~~-~g~~~~ilRp~~v~Gp~~~-----------~~~~~~~~~~~-~g~~~~~~g------~g~~~~~~i 224 (485)
..+|.+++.++.+ .+++++++||+++|||... .+++.+..... ....+.++| +++..++|+
T Consensus 150 ~~~e~~~~~~~~~~~~~~~~ilR~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~v 229 (328)
T TIGR01179 150 LMSERILRDLSKADPGLSYVILRYFNVAGADPEGTIGEDPPGITHLIPYACQVAVGKRDKLTIFGTDYPTPDGTCVRDYI 229 (328)
T ss_pred HHHHHHHHHHHHhccCCCEEEEecCcccCCCCCCccccCCcccchHHHHHHHHHHhCCCCeEEeCCcccCCCCceEEeee
Confidence 9999999998766 7899999999999998532 13344444443 334444433 567889999
Q ss_pred cHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCCCccHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHh
Q 047227 225 YVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELTYRLL 304 (485)
Q Consensus 225 ~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~~t~~el~~~i~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~ 304 (485)
|++|+|+++..+++..... ..+++||+++++++|++|+++.+.+.+|++.+....+..
T Consensus 230 ~~~D~a~~~~~~~~~~~~~------~~~~~~n~~~~~~~s~~ei~~~~~~~~g~~~~~~~~~~~---------------- 287 (328)
T TIGR01179 230 HVMDLADAHLAALEYLLNG------GESHVYNLGYGQGFSVLEVIEAFKKVSGVDFPVELAPRR---------------- 287 (328)
T ss_pred eHHHHHHHHHHHHhhhhcC------CCcceEEcCCCCcccHHHHHHHHHHHhCCCcceEeCCCC----------------
Confidence 9999999999988743221 456899999999999999999999999986544322210
Q ss_pred CCCCCCCCCCCHHHHHhhccceeeehhhHHhhcCCCCCCC-hHHHHHHHHHHHHH
Q 047227 305 GPYGMKVPQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVP-LEEGIKRTVDSYSH 358 (485)
Q Consensus 305 ~~~~~~~p~~~~~~~~~~~~~~~~d~~ka~~~lG~~p~~~-l~e~i~~~~~~~~~ 358 (485)
.. . ......|++|+++.|||+|.++ ++++++++++|+++
T Consensus 288 -----~~-----~-----~~~~~~~~~~~~~~lg~~p~~~~l~~~~~~~~~~~~~ 327 (328)
T TIGR01179 288 -----PG-----D-----PASLVADASKIRRELGWQPKYTDLEIIIKTAWRWESR 327 (328)
T ss_pred -----Cc-----c-----ccchhcchHHHHHHhCCCCCcchHHHHHHHHHHHHhc
Confidence 00 0 0123459999999999999997 99999999999976
|
This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately. |
| >TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=288.46 Aligned_cols=279 Identities=21% Similarity=0.241 Sum_probs=215.8
Q ss_pred EEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcC--CCE
Q 047227 9 LCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQG--AEV 86 (485)
Q Consensus 9 ~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~--~d~ 86 (485)
+|||||||||+|++++++|+++| ++|++++|. .+|+.|.+++.+++++ +|+
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~g-~~v~~~~r~--------------------------~~d~~~~~~~~~~~~~~~~d~ 53 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPEG-RVVVALTSS--------------------------QLDLTDPEALERLLRAIRPDA 53 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhcC-CEEEEeCCc--------------------------ccCCCCHHHHHHHHHhCCCCE
Confidence 58999999999999999999999 589888663 3799999999999986 599
Q ss_pred EEEcCCCCC---CCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCccccccCCCCcCCCCCCCCCCCCCCchHHHHH
Q 047227 87 VFHMAAPNS---SINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDFYSATK 163 (485)
Q Consensus 87 Vih~aa~~~---~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy~~~~~~~~~~~e~~~~~~~~~~~Y~~sK 163 (485)
|||+|+... ...++...+++|+.++.+++++|++.++ +|||+||.++|++... .+.+|+.+ ..|.+.|+.+|
T Consensus 54 vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~v~~Ss~~vy~~~~~--~~~~E~~~--~~~~~~Y~~~K 128 (287)
T TIGR01214 54 VVNTAAYTDVDGAESDPEKAFAVNALAPQNLARAAARHGA-RLVHISTDYVFDGEGK--RPYREDDA--TNPLNVYGQSK 128 (287)
T ss_pred EEECCccccccccccCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEeeeeeecCCCC--CCCCCCCC--CCCcchhhHHH
Confidence 999999432 2235677889999999999999999886 8999999999964322 23444443 46788999999
Q ss_pred HHHHHHHHHHhCCCCceEEEEecCCcccCCC-CCChHHHHHHHHcCCCeEEecCCCceeecccHHHHHHHHHHHHHHhcc
Q 047227 164 AEGEALVIKANGTNGLLTCCIRPSSIFGPGD-RLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICAERALAS 242 (485)
Q Consensus 164 ~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~-~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~D~a~a~~~~~~~~~~ 242 (485)
..+|++++.+ +++++++||+++|||++ ..++..++..+..++++.+.++ ++++++|++|+|+++..+++.
T Consensus 129 ~~~E~~~~~~----~~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~v~Dva~a~~~~~~~--- 199 (287)
T TIGR01214 129 LAGEQAIRAA----GPNALIVRTSWLYGGGGGRNFVRTMLRLAGRGEELRVVDD--QIGSPTYAKDLARVIAALLQR--- 199 (287)
T ss_pred HHHHHHHHHh----CCCeEEEEeeecccCCCCCCHHHHHHHHhhcCCCceEecC--CCcCCcCHHHHHHHHHHHHhh---
Confidence 9999999875 57899999999999986 3556677777888877777664 678999999999999998863
Q ss_pred ccchhhccCCcEEEeeCCCCccHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCCCCCCCCHHHHHhh
Q 047227 243 EVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELTYRLLGPYGMKVPQLTPSRVRLL 322 (485)
Q Consensus 243 ~~~~~~~~~g~~ynv~~~~~~t~~el~~~i~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 322 (485)
+...+++||+++++++++.|+++.+.+.+|.+...+..|... ... . ... ..+.. .
T Consensus 200 -----~~~~~~~~ni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~--~~~---~---~~~-----~~~~~-------~ 254 (287)
T TIGR01214 200 -----LARARGVYHLANSGQCSWYEFAQAIFEEAGADGLLLHPQEVK--PIS---S---KEY-----PRPAR-------R 254 (287)
T ss_pred -----ccCCCCeEEEECCCCcCHHHHHHHHHHHhCcccccccCceeE--eec---H---HHc-----CCCCC-------C
Confidence 223468999999999999999999999999865433322100 000 0 000 01100 0
Q ss_pred ccceeeehhhHHhhcCCCCCCChHHHHHHHHH
Q 047227 323 SCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVD 354 (485)
Q Consensus 323 ~~~~~~d~~ka~~~lG~~p~~~l~e~i~~~~~ 354 (485)
.....+|++|+++.|||++ .+++|+++++++
T Consensus 255 ~~~~~~d~~~~~~~lg~~~-~~~~~~l~~~~~ 285 (287)
T TIGR01214 255 PAYSVLDNTKLVKTLGTPL-PHWREALRAYLQ 285 (287)
T ss_pred CCccccchHHHHHHcCCCC-ccHHHHHHHHHh
Confidence 1234689999999999955 699999999875
|
This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc. |
| >CHL00194 ycf39 Ycf39; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-35 Score=290.44 Aligned_cols=302 Identities=14% Similarity=0.142 Sum_probs=226.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCCCEE
Q 047227 8 RLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGAEVV 87 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~d~V 87 (485)
|+|||||||||+|++++++|+++| ++|++++|..+.. ..+...+++++.+|++|++++.++++++|+|
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g-~~V~~l~R~~~~~-----------~~l~~~~v~~v~~Dl~d~~~l~~al~g~d~V 68 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEG-YQVRCLVRNLRKA-----------SFLKEWGAELVYGDLSLPETLPPSFKGVTAI 68 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCC-CeEEEEEcChHHh-----------hhHhhcCCEEEECCCCCHHHHHHHHCCCCEE
Confidence 589999999999999999999999 5999998874311 1112347899999999999999999999999
Q ss_pred EEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCccccccCCCCcCCCCCCCCCCCCCCchHHHHHHHHH
Q 047227 88 FHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDFYSATKAEGE 167 (485)
Q Consensus 88 ih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy~~~~~~~~~~~e~~~~~~~~~~~Y~~sK~~~E 167 (485)
||+++... .++..+.++|+.++.+++++|++.|++||||+||.++. ..+.++|..+|..+|
T Consensus 69 i~~~~~~~--~~~~~~~~~~~~~~~~l~~aa~~~gvkr~I~~Ss~~~~-----------------~~~~~~~~~~K~~~e 129 (317)
T CHL00194 69 IDASTSRP--SDLYNAKQIDWDGKLALIEAAKAAKIKRFIFFSILNAE-----------------QYPYIPLMKLKSDIE 129 (317)
T ss_pred EECCCCCC--CCccchhhhhHHHHHHHHHHHHHcCCCEEEEecccccc-----------------ccCCChHHHHHHHHH
Confidence 99987432 34556789999999999999999999999999985432 012356889999999
Q ss_pred HHHHHHhCCCCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCceeecccHHHHHHHHHHHHHHhccccchh
Q 047227 168 ALVIKANGTNGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICAERALASEVTVA 247 (485)
Q Consensus 168 ~~~~~~~~~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~ 247 (485)
++++. .+++++++||+.+|+.. +..+...+..++++.+ +++++.++|+|++|+|++++.+++.
T Consensus 130 ~~l~~----~~l~~tilRp~~~~~~~----~~~~~~~~~~~~~~~~-~~~~~~~~~i~v~Dva~~~~~~l~~-------- 192 (317)
T CHL00194 130 QKLKK----SGIPYTIFRLAGFFQGL----ISQYAIPILEKQPIWI-TNESTPISYIDTQDAAKFCLKSLSL-------- 192 (317)
T ss_pred HHHHH----cCCCeEEEeecHHhhhh----hhhhhhhhccCCceEe-cCCCCccCccCHHHHHHHHHHHhcC--------
Confidence 98875 68999999999988642 2222222334555554 4556778999999999999988762
Q ss_pred hccCCcEEEeeCCCCccHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCCCCC-CCCHHHHHhhccce
Q 047227 248 EKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELTYRLLGPYGMKVP-QLTPSRVRLLSCSR 326 (485)
Q Consensus 248 ~~~~g~~ynv~~~~~~t~~el~~~i~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~~~~~~~~ 326 (485)
+...+++||+++++.+|+.|+++.+.+.+|++.....+|.+.....+.+.+++.. ....+ .+............
T Consensus 193 ~~~~~~~~ni~g~~~~s~~el~~~~~~~~g~~~~~~~vp~~~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~ 267 (317)
T CHL00194 193 PETKNKTFPLVGPKSWNSSEIISLCEQLSGQKAKISRVPLFLLKLLRQITGFFEW-----TWNISDRLAFVEILNTSNNF 267 (317)
T ss_pred ccccCcEEEecCCCccCHHHHHHHHHHHhCCCCeEEeCCHHHHHHHHHHHhhccc-----chhhHHHHHHHHHHhcCCCc
Confidence 2356889999999999999999999999999988888998877666655442210 00111 11111112233344
Q ss_pred eeehhhHHhhcCCCCC--CChHHHHHHHHHHHHHhHhc
Q 047227 327 TFDCSKAKDLLGYMPI--VPLEEGIKRTVDSYSHLRAE 362 (485)
Q Consensus 327 ~~d~~ka~~~lG~~p~--~~l~e~i~~~~~~~~~~~~~ 362 (485)
.++.+++++.||+.|. .++++++++.++-..+.-++
T Consensus 268 ~~~~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~ 305 (317)
T CHL00194 268 SSSMAELYKIFKIDPNELISLEDYFQEYFERILKRLKD 305 (317)
T ss_pred CCCHHHHHHHhCCChhhhhhHHHHHHHHHHHHHHHHHh
Confidence 5678899999999984 58999999988876654443
|
|
| >PLN02686 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-35 Score=294.58 Aligned_cols=295 Identities=22% Similarity=0.243 Sum_probs=212.1
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhh-------cCCCeEEEEecCCCHHHH
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEAL-------RSGRAHYVSFDLRHKAQV 77 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~-------~~~~v~~~~~Dl~d~~~l 77 (485)
+++|+||||||+||||+++++.|+++| ++|+++.|...... . +.... ...+++++.+|++|.+++
T Consensus 51 ~~~k~VLVTGatGfIG~~lv~~L~~~G-~~V~~~~r~~~~~~----~---l~~l~~~~~~~~~~~~~~~v~~Dl~d~~~l 122 (367)
T PLN02686 51 AEARLVCVTGGVSFLGLAIVDRLLRHG-YSVRIAVDTQEDKE----K---LREMEMFGEMGRSNDGIWTVMANLTEPESL 122 (367)
T ss_pred CCCCEEEEECCchHHHHHHHHHHHHCC-CEEEEEeCCHHHHH----H---HHHHhhhccccccCCceEEEEcCCCCHHHH
Confidence 567899999999999999999999999 58888766532110 0 11100 013578999999999999
Q ss_pred HHHhcCCCEEEEcCCCCCCC---CchhhhHHHHHHHHHHHHHHHHhc-CCCEEEEecCc--cccccCCC-C-cCCCCCCC
Q 047227 78 LQALQGAEVVFHMAAPNSSI---NNHKLHHSVNVEGTKNVIDACAEL-KVKRLIYTSSP--SVVFDGVH-G-IINGNEAL 149 (485)
Q Consensus 78 ~~~~~~~d~Vih~aa~~~~~---~~~~~~~~~nv~~t~~ll~a~~~~-~v~r~V~~SS~--~vy~~~~~-~-~~~~~e~~ 149 (485)
.++++++|+|||+|+..... .......++|+.++.+++++|++. +++||||+||. .+|+.... . ....+|+.
T Consensus 123 ~~~i~~~d~V~hlA~~~~~~~~~~~~~~~~~~nv~gt~~llea~~~~~~v~r~V~~SS~~~~vyg~~~~~~~~~~i~E~~ 202 (367)
T PLN02686 123 HEAFDGCAGVFHTSAFVDPAGLSGYTKSMAELEAKASENVIEACVRTESVRKCVFTSSLLACVWRQNYPHDLPPVIDEES 202 (367)
T ss_pred HHHHHhccEEEecCeeecccccccccchhhhhhHHHHHHHHHHHHhcCCccEEEEeccHHHhcccccCCCCCCcccCCCC
Confidence 99999999999999943221 122456789999999999999986 79999999996 46653211 1 11233332
Q ss_pred C----CCCCCCchHHHHHHHHHHHHHHHhCCCCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCceeeccc
Q 047227 150 P----YPPKHNDFYSATKAEGEALVIKANGTNGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFTY 225 (485)
Q Consensus 150 ~----~~~~~~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~ 225 (485)
+ .+..|.++|+.+|..+|++++.+++.+|++++++||+++|||+.....+..+..+..|. ..++|+|. ++|+|
T Consensus 203 ~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~gl~~v~lRp~~vyGp~~~~~~~~~~~~~~~g~-~~~~g~g~--~~~v~ 279 (367)
T PLN02686 203 WSDESFCRDNKLWYALGKLKAEKAAWRAARGKGLKLATICPALVTGPGFFRRNSTATIAYLKGA-QEMLADGL--LATAD 279 (367)
T ss_pred CCChhhcccccchHHHHHHHHHHHHHHHHHhcCceEEEEcCCceECCCCCCCCChhHHHHhcCC-CccCCCCC--cCeEE
Confidence 2 13456778999999999999998888899999999999999986432222222344554 45666654 57999
Q ss_pred HHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCCCccHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhC
Q 047227 226 VANVAHAHICAERALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELTYRLLG 305 (485)
Q Consensus 226 v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~~t~~el~~~i~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 305 (485)
|+|+|++++++++....+ ..++.| +++++++++.|+++.+.+.+|.+...+..|..
T Consensus 280 V~Dva~A~~~al~~~~~~------~~~~~y-i~~g~~~s~~e~~~~i~~~~g~~~~~~~~~~~----------------- 335 (367)
T PLN02686 280 VERLAEAHVCVYEAMGNK------TAFGRY-ICFDHVVSREDEAEELARQIGLPINKIAGNSS----------------- 335 (367)
T ss_pred HHHHHHHHHHHHhccCCC------CCCCcE-EEeCCCccHHHHHHHHHHHcCCCCCcCCCchh-----------------
Confidence 999999999998742111 345678 88889999999999999999976543322110
Q ss_pred CCCCCCCCCCHHHHHhhccceeeehhhHHhhcCCCCCCChHH
Q 047227 306 PYGMKVPQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEE 347 (485)
Q Consensus 306 ~~~~~~p~~~~~~~~~~~~~~~~d~~ka~~~lG~~p~~~l~e 347 (485)
. + . ....+..|++|++++|||+|+...++
T Consensus 336 ----~-~----~----d~~~~~~d~~kl~~~l~~~~~~~~~~ 364 (367)
T PLN02686 336 ----S-D----D----TPARFELSNKKLSRLMSRTRRCCYDE 364 (367)
T ss_pred ----h-c----C----CcccccccHHHHHHHHHHhhhccccc
Confidence 0 0 0 11234569999999999999765543
|
|
| >TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-34 Score=281.41 Aligned_cols=275 Identities=19% Similarity=0.228 Sum_probs=211.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCC-ceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCC
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDM-FSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGA 84 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 84 (485)
++|+||||||+||||+++++.|+++|. ++|++++|..... .. +...+...+++++.+|++|++++.++++++
T Consensus 3 ~~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~----~~---~~~~~~~~~~~~v~~Dl~d~~~l~~~~~~i 75 (324)
T TIGR03589 3 NNKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRDELKQ----WE---MQQKFPAPCLRFFIGDVRDKERLTRALRGV 75 (324)
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCChhHH----HH---HHHHhCCCcEEEEEccCCCHHHHHHHHhcC
Confidence 358999999999999999999999862 4788888754311 00 111122346889999999999999999999
Q ss_pred CEEEEcCCCC---CCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCccccccCCCCcCCCCCCCCCCCCCCchHHH
Q 047227 85 EVVFHMAAPN---SSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDFYSA 161 (485)
Q Consensus 85 d~Vih~aa~~---~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy~~~~~~~~~~~e~~~~~~~~~~~Y~~ 161 (485)
|+|||+||.. ....++..++++|+.|+.+++++|++.++++||++||... ..|.++|+.
T Consensus 76 D~Vih~Ag~~~~~~~~~~~~~~~~~Nv~g~~~ll~aa~~~~~~~iV~~SS~~~------------------~~p~~~Y~~ 137 (324)
T TIGR03589 76 DYVVHAAALKQVPAAEYNPFECIRTNINGAQNVIDAAIDNGVKRVVALSTDKA------------------ANPINLYGA 137 (324)
T ss_pred CEEEECcccCCCchhhcCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCCCC------------------CCCCCHHHH
Confidence 9999999932 2344667899999999999999999999999999999532 245678999
Q ss_pred HHHHHHHHHHHHh---CCCCceEEEEecCCcccCCCCCChHHHHHHHHcCC-CeEEecCCCceeecccHHHHHHHHHHHH
Q 047227 162 TKAEGEALVIKAN---GTNGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGK-SKFIIGDGNNVYDFTYVANVAHAHICAE 237 (485)
Q Consensus 162 sK~~~E~~~~~~~---~~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~-~~~~~g~g~~~~~~i~v~D~a~a~~~~~ 237 (485)
+|..+|++++.++ ..+|++++++||+++|||+. .+++.+...+..++ ++.+ +++++.++|+|++|+|++++.++
T Consensus 138 sK~~~E~l~~~~~~~~~~~gi~~~~lR~g~v~G~~~-~~i~~~~~~~~~~~~~~~i-~~~~~~r~~i~v~D~a~a~~~al 215 (324)
T TIGR03589 138 TKLASDKLFVAANNISGSKGTRFSVVRYGNVVGSRG-SVVPFFKSLKEEGVTELPI-TDPRMTRFWITLEQGVNFVLKSL 215 (324)
T ss_pred HHHHHHHHHHHHHhhccccCcEEEEEeecceeCCCC-CcHHHHHHHHHhCCCCeee-CCCCceEeeEEHHHHHHHHHHHH
Confidence 9999999997743 45799999999999999975 46777777777776 4444 47888999999999999999987
Q ss_pred HHhccccchhhccCCcEEEeeCCCCccHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCCCCCCCCHH
Q 047227 238 RALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELTYRLLGPYGMKVPQLTPS 317 (485)
Q Consensus 238 ~~~~~~~~~~~~~~g~~ynv~~~~~~t~~el~~~i~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 317 (485)
+.. ..+++| ++++..+++.|+++.+.+..+.+. .. .+...+.
T Consensus 216 ~~~---------~~~~~~-~~~~~~~sv~el~~~i~~~~~~~~--~~--------------------------~~~g~~~ 257 (324)
T TIGR03589 216 ERM---------LGGEIF-VPKIPSMKITDLAEAMAPECPHKI--VG--------------------------IRPGEKL 257 (324)
T ss_pred hhC---------CCCCEE-ccCCCcEEHHHHHHHHHhhCCeeE--eC--------------------------CCCCchh
Confidence 731 235678 566677999999999988653221 00 0000000
Q ss_pred HHHhhccceeeehhhHHhhcCCCCCCChHHHHHH
Q 047227 318 RVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKR 351 (485)
Q Consensus 318 ~~~~~~~~~~~d~~ka~~~lG~~p~~~l~e~i~~ 351 (485)
....+|.+|+++.|||+|.+++++++.+
T Consensus 258 ------~~~~~~~~~~~~~lg~~~~~~l~~~~~~ 285 (324)
T TIGR03589 258 ------HEVMITEDDARHTYELGDYYAILPSISF 285 (324)
T ss_pred ------HhhhcChhhhhhhcCCCCeEEEcccccc
Confidence 1133699999999999999999999863
|
This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family. |
| >PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=279.95 Aligned_cols=279 Identities=28% Similarity=0.385 Sum_probs=203.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc--CCC
Q 047227 8 RLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ--GAE 85 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--~~d 85 (485)
|||||||++|++|+++.+.|.++| ++|..++|. ..|++|.+++.+.++ ++|
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~~-~~v~~~~r~--------------------------~~dl~d~~~~~~~~~~~~pd 53 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKERG-YEVIATSRS--------------------------DLDLTDPEAVAKLLEAFKPD 53 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTTS-EEEEEESTT--------------------------CS-TTSHHHHHHHHHHH--S
T ss_pred CEEEEECCCCHHHHHHHHHHhhCC-CEEEEeCch--------------------------hcCCCCHHHHHHHHHHhCCC
Confidence 799999999999999999999998 688877554 379999999999987 499
Q ss_pred EEEEcCCC---CCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCccccccCCCCcCCCCCCCCCCCCCCchHHHH
Q 047227 86 VVFHMAAP---NSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDFYSAT 162 (485)
Q Consensus 86 ~Vih~aa~---~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy~~~~~~~~~~~e~~~~~~~~~~~Y~~s 162 (485)
+|||+||. ..+..+++..+.+|+.++.+++++|++.|. ++||+||..||.+....++ +|+. +..|.+.||.+
T Consensus 54 ~Vin~aa~~~~~~ce~~p~~a~~iN~~~~~~la~~~~~~~~-~li~~STd~VFdG~~~~~y--~E~d--~~~P~~~YG~~ 128 (286)
T PF04321_consen 54 VVINCAAYTNVDACEKNPEEAYAINVDATKNLAEACKERGA-RLIHISTDYVFDGDKGGPY--TEDD--PPNPLNVYGRS 128 (286)
T ss_dssp EEEE------HHHHHHSHHHHHHHHTHHHHHHHHHHHHCT--EEEEEEEGGGS-SSTSSSB---TTS------SSHHHHH
T ss_pred eEeccceeecHHhhhhChhhhHHHhhHHHHHHHHHHHHcCC-cEEEeeccEEEcCCccccc--ccCC--CCCCCCHHHHH
Confidence 99999994 335568999999999999999999999997 9999999999853323333 3332 25789999999
Q ss_pred HHHHHHHHHHHhCCCCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCceeecccHHHHHHHHHHHHHHhcc
Q 047227 163 KAEGEALVIKANGTNGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICAERALAS 242 (485)
Q Consensus 163 K~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~D~a~a~~~~~~~~~~ 242 (485)
|..+|+.+++... +.+|+|++.+||+..+.++..++..+.+++.+.+..| ..++.+|++|+|+++..+++....
T Consensus 129 K~~~E~~v~~~~~----~~~IlR~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~d--~~~~p~~~~dlA~~i~~l~~~~~~ 202 (286)
T PF04321_consen 129 KLEGEQAVRAACP----NALILRTSWVYGPSGRNFLRWLLRRLRQGEPIKLFDD--QYRSPTYVDDLARVILELIEKNLS 202 (286)
T ss_dssp HHHHHHHHHHH-S----SEEEEEE-SEESSSSSSHHHHHHHHHHCTSEEEEESS--CEE--EEHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC----CEEEEecceecccCCCchhhhHHHHHhcCCeeEeeCC--ceeCCEEHHHHHHHHHHHHHhccc
Confidence 9999999998543 5899999999999777888999999999999888754 789999999999999999886443
Q ss_pred ccchhhccCCcEEEeeCCCCccHHHHHHHHHHHcCCCCCCcc-CCHHHHHHHHHHHHHHHHHhCCCCCCCCCCCHHHHHh
Q 047227 243 EVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIK-IPAFVMMPIAHMVELTYRLLGPYGMKVPQLTPSRVRL 321 (485)
Q Consensus 243 ~~~~~~~~~g~~ynv~~~~~~t~~el~~~i~~~~g~~~~~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 321 (485)
+ ....++||+++++.+|+.||++.+++.+|.+.+.+. ++.. ..+. ...
T Consensus 203 ~-----~~~~Giyh~~~~~~~S~~e~~~~i~~~~~~~~~~i~~~~~~---------------------~~~~-----~~~ 251 (286)
T PF04321_consen 203 G-----ASPWGIYHLSGPERVSRYEFAEAIAKILGLDPELIKPVSSS---------------------EFPR-----AAP 251 (286)
T ss_dssp ------GGG-EEEE---BS-EEHHHHHHHHHHHHTHCTTEEEEESST---------------------TSTT-----SSG
T ss_pred c-----cccceeEEEecCcccCHHHHHHHHHHHhCCCCceEEecccc---------------------cCCC-----CCC
Confidence 2 123579999999999999999999999998774322 2211 1110 011
Q ss_pred hccceeeehhhHHhhcCCCCCCChHHHHHHHHHHH
Q 047227 322 LSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSY 356 (485)
Q Consensus 322 ~~~~~~~d~~ka~~~lG~~p~~~l~e~i~~~~~~~ 356 (485)
...+..+|++|+++.+|+++. +++++++++++.|
T Consensus 252 rp~~~~L~~~kl~~~~g~~~~-~~~~~l~~~~~~~ 285 (286)
T PF04321_consen 252 RPRNTSLDCRKLKNLLGIKPP-PWREGLEELVKQY 285 (286)
T ss_dssp S-SBE-B--HHHHHCTTS----BHHHHHHHHHHHH
T ss_pred CCCcccccHHHHHHccCCCCc-CHHHHHHHHHHHh
Confidence 123557899999999999985 9999999999876
|
1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. |
| >PRK07201 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-33 Score=302.95 Aligned_cols=331 Identities=21% Similarity=0.224 Sum_probs=238.6
Q ss_pred CEEEEEcCCCchHHHHHHHHH--hcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCH------HHHHH
Q 047227 8 RLCVVTGGRGFAARHLVEMLI--RYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHK------AQVLQ 79 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll--~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~------~~l~~ 79 (485)
|+|||||||||||+++++.|+ ++| ++|++++|..... .... +.......+++++.+|++|+ +.+.+
T Consensus 1 m~ILVTGatGfIG~~lv~~Ll~~~~g-~~V~~l~R~~~~~----~~~~-~~~~~~~~~v~~~~~Dl~~~~~~~~~~~~~~ 74 (657)
T PRK07201 1 MRYFVTGGTGFIGRRLVSRLLDRRRE-ATVHVLVRRQSLS----RLEA-LAAYWGADRVVPLVGDLTEPGLGLSEADIAE 74 (657)
T ss_pred CeEEEeCCccHHHHHHHHHHHhcCCC-CEEEEEECcchHH----HHHH-HHHhcCCCcEEEEecccCCccCCcCHHHHHH
Confidence 589999999999999999999 478 5899999853211 0000 00111125789999999984 45555
Q ss_pred HhcCCCEEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCccccccCCCCcCCCCCCCCCCCCCCchH
Q 047227 80 ALQGAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDFY 159 (485)
Q Consensus 80 ~~~~~d~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy~~~~~~~~~~~e~~~~~~~~~~~Y 159 (485)
+ +++|+|||+|+.......+....++|+.++.+++++|++.++++|||+||.++|+.... ... ++..+.+..+.++|
T Consensus 75 l-~~~D~Vih~Aa~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~v~~SS~~v~g~~~~-~~~-e~~~~~~~~~~~~Y 151 (657)
T PRK07201 75 L-GDIDHVVHLAAIYDLTADEEAQRAANVDGTRNVVELAERLQAATFHHVSSIAVAGDYEG-VFR-EDDFDEGQGLPTPY 151 (657)
T ss_pred h-cCCCEEEECceeecCCCCHHHHHHHHhHHHHHHHHHHHhcCCCeEEEEeccccccCccC-ccc-cccchhhcCCCCch
Confidence 5 88999999999544445667788999999999999999999999999999999974322 111 11112234456789
Q ss_pred HHHHHHHHHHHHHHhCCCCceEEEEecCCcccCCCCCC---------hHHHHHHHHc-CCCeEEecCCCceeecccHHHH
Q 047227 160 SATKAEGEALVIKANGTNGLLTCCIRPSSIFGPGDRLL---------VPSLVAAARA-GKSKFIIGDGNNVYDFTYVANV 229 (485)
Q Consensus 160 ~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~~~---------~~~~~~~~~~-g~~~~~~g~g~~~~~~i~v~D~ 229 (485)
+.+|..+|+++++ ..+++++++||+++|||+..+. +..++..... .......+++....+++|++|+
T Consensus 152 ~~sK~~~E~~~~~---~~g~~~~ilRp~~v~G~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vddv 228 (657)
T PRK07201 152 HRTKFEAEKLVRE---ECGLPWRVYRPAVVVGDSRTGEMDKIDGPYYFFKVLAKLAKLPSWLPMVGPDGGRTNIVPVDYV 228 (657)
T ss_pred HHHHHHHHHHHHH---cCCCcEEEEcCCeeeecCCCCccccCCcHHHHHHHHHHhccCCcccccccCCCCeeeeeeHHHH
Confidence 9999999999986 3589999999999999864321 1112222211 1223455666678899999999
Q ss_pred HHHHHHHHHHhccccchhhccCCcEEEeeCCCCccHHHHHHHHHHHcCCCC---CCccCCHHHHHHHHHHHHHHHHHhCC
Q 047227 230 AHAHICAERALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQR---PRIKIPAFVMMPIAHMVELTYRLLGP 306 (485)
Q Consensus 230 a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~~t~~el~~~i~~~~g~~~---~~~~~p~~~~~~~~~~~~~~~~~~~~ 306 (485)
++++..+++ .+...|++||+++++++++.|+++.+.+.+|.+. +...+|.++...+..+.........
T Consensus 229 a~ai~~~~~--------~~~~~g~~~ni~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~- 299 (657)
T PRK07201 229 ADALDHLMH--------KDGRDGQTFHLTDPKPQRVGDIYNAFARAAGAPPDARLFGFLPGFVAAPLLAALGPVRRLRN- 299 (657)
T ss_pred HHHHHHHhc--------CcCCCCCEEEeCCCCCCcHHHHHHHHHHHhCCCccccccccCChHHHHHHhhhcchhhHHHH-
Confidence 999998865 2225678999999999999999999999999987 6777888876666552111111000
Q ss_pred CCCCCCCCCHHHHHhhccceeeehhhHHhhc---CCCCCCChHHHHHHHHHHHHHhH
Q 047227 307 YGMKVPQLTPSRVRLLSCSRTFDCSKAKDLL---GYMPIVPLEEGIKRTVDSYSHLR 360 (485)
Q Consensus 307 ~~~~~p~~~~~~~~~~~~~~~~d~~ka~~~l---G~~p~~~l~e~i~~~~~~~~~~~ 360 (485)
.......+.+....++.+...||++|+++.| |+.+. ++++.+.+.++|+.++.
T Consensus 300 ~~~~~~~~~~~~l~~~~~~~~f~~~~~~~~L~~~~~~~p-~~~~~~~~~~~~~~~~~ 355 (657)
T PRK07201 300 AVATQLGIPPEVLDFVNYPTTFDSRETRAALKGSGIEVP-RLASYAPRLWDYWERHL 355 (657)
T ss_pred HHHHhcCCCHHHHHhccCCCeeccHHHHHHhccCCcCCC-ChHHHHHHHHHHHHhcC
Confidence 0001123345677778888899999999998 55543 78999999999887754
|
|
| >COG1089 Gmd GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=256.86 Aligned_cols=323 Identities=21% Similarity=0.223 Sum_probs=252.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcC--C
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQG--A 84 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~--~ 84 (485)
+|+.||||-||+-|++|++.|+++| ++|.++.|..+......- +-+.......+++..+.+|++|...+.++++. +
T Consensus 2 ~K~ALITGITGQDGsYLa~lLLekG-Y~VhGi~Rrss~~n~~ri-~L~~~~~~~~~~l~l~~gDLtD~~~l~r~l~~v~P 79 (345)
T COG1089 2 GKVALITGITGQDGSYLAELLLEKG-YEVHGIKRRSSSFNTPRI-HLYEDPHLNDPRLHLHYGDLTDSSNLLRILEEVQP 79 (345)
T ss_pred CceEEEecccCCchHHHHHHHHhcC-cEEEEEeeccccCCcccc-eeccccccCCceeEEEeccccchHHHHHHHHhcCc
Confidence 4789999999999999999999999 799999887654433321 11122333456689999999999999999974 9
Q ss_pred CEEEEcCC---CCCCCCchhhhHHHHHHHHHHHHHHHHhcCC--CEEEEecCccccccCCCCcCCCCCCCCCCCCCCchH
Q 047227 85 EVVFHMAA---PNSSINNHKLHHSVNVEGTKNVIDACAELKV--KRLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDFY 159 (485)
Q Consensus 85 d~Vih~aa---~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v--~r~V~~SS~~vy~~~~~~~~~~~e~~~~~~~~~~~Y 159 (485)
|.|+|+|| +..+.++|..+.+++..|+.+++|+.+..+. .||.+.||...||. ....+.+|++| ..|.++|
T Consensus 80 dEIYNLaAQS~V~vSFe~P~~T~~~~~iGtlrlLEaiR~~~~~~~rfYQAStSE~fG~--v~~~pq~E~TP--FyPrSPY 155 (345)
T COG1089 80 DEIYNLAAQSHVGVSFEQPEYTADVDAIGTLRLLEAIRILGEKKTRFYQASTSELYGL--VQEIPQKETTP--FYPRSPY 155 (345)
T ss_pred hhheeccccccccccccCcceeeeechhHHHHHHHHHHHhCCcccEEEecccHHhhcC--cccCccccCCC--CCCCCHH
Confidence 99999999 4568889999999999999999999999874 58999999999964 45567778775 6899999
Q ss_pred HHHHHHHHHHHHHHhCCCCceEEEEecCCcccCCCC-CC----hHHHHHHHHcCCC-eEEecCCCceeecccHHHHHHHH
Q 047227 160 SATKAEGEALVIKANGTNGLLTCCIRPSSIFGPGDR-LL----VPSLVAAARAGKS-KFIIGDGNNVYDFTYVANVAHAH 233 (485)
Q Consensus 160 ~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~-~~----~~~~~~~~~~g~~-~~~~g~g~~~~~~i~v~D~a~a~ 233 (485)
+.+|..+-.+...|.+.+|+-.|.=+..|-=+|... .+ +...+.++..|.. ....|+-+..|||-|+.|.++++
T Consensus 156 AvAKlYa~W~tvNYResYgl~AcnGILFNHESP~Rge~FVTRKIt~ava~Ik~G~q~~l~lGNldAkRDWG~A~DYVe~m 235 (345)
T COG1089 156 AVAKLYAYWITVNYRESYGLFACNGILFNHESPLRGETFVTRKITRAVARIKLGLQDKLYLGNLDAKRDWGHAKDYVEAM 235 (345)
T ss_pred HHHHHHHHheeeehHhhcCceeecceeecCCCCCCccceehHHHHHHHHHHHccccceEEeccccccccccchHHHHHHH
Confidence 999999999999999999999998888888888653 22 2334455555654 45669999999999999999999
Q ss_pred HHHHHHhccccchhhccCCcEEEeeCCCCccHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCC-----
Q 047227 234 ICAERALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELTYRLLGPYG----- 308 (485)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~g~~ynv~~~~~~t~~el~~~i~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~----- 308 (485)
+.++++ ..+..|++++++..|++||++...+..|.+....-.-.. |.-.+ ...|
T Consensus 236 wlmLQq----------~~PddyViATg~t~sVrefv~~Af~~~g~~l~w~g~g~~---------e~g~d--a~~G~~~V~ 294 (345)
T COG1089 236 WLMLQQ----------EEPDDYVIATGETHSVREFVELAFEMVGIDLEWEGTGVD---------EKGVD--AKTGKIIVE 294 (345)
T ss_pred HHHHcc----------CCCCceEEecCceeeHHHHHHHHHHHcCceEEEeecccc---------ccccc--cccCceeEE
Confidence 999885 335689999999999999999999999976543210000 00000 0011
Q ss_pred CCCCCCCHHHHHhhccceeeehhhHHhhcCCCCCCChHHHHHHHHHHHHHhH
Q 047227 309 MKVPQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSYSHLR 360 (485)
Q Consensus 309 ~~~p~~~~~~~~~~~~~~~~d~~ka~~~lG~~p~~~l~e~i~~~~~~~~~~~ 360 (485)
.+...+.|..++.+- .|.+||++.|||+|.++++|-+++|+++..+..
T Consensus 295 idp~~fRPaEV~~Ll----gdp~KA~~~LGW~~~~~~~elv~~Mv~~dl~~~ 342 (345)
T COG1089 295 IDPRYFRPAEVDLLL----GDPTKAKEKLGWRPEVSLEELVREMVEADLEAA 342 (345)
T ss_pred ECccccCchhhhhhc----CCHHHHHHHcCCccccCHHHHHHHHHHHHHHHh
Confidence 122345566655543 499999999999999999999999999987643
|
|
| >PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-34 Score=269.80 Aligned_cols=226 Identities=33% Similarity=0.420 Sum_probs=190.5
Q ss_pred EEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcC--CCEE
Q 047227 10 CVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQG--AEVV 87 (485)
Q Consensus 10 iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~--~d~V 87 (485)
|||||||||||++++++|+++| +.|+.+.+.+..... . ....+++++.+|+.|.+.+.+++++ +|+|
T Consensus 1 IlI~GatG~iG~~l~~~l~~~g-~~v~~~~~~~~~~~~--------~--~~~~~~~~~~~dl~~~~~~~~~~~~~~~d~v 69 (236)
T PF01370_consen 1 ILITGATGFIGSALVRQLLKKG-HEVIVLSRSSNSESF--------E--EKKLNVEFVIGDLTDKEQLEKLLEKANIDVV 69 (236)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT-TEEEEEESCSTGGHH--------H--HHHTTEEEEESETTSHHHHHHHHHHHTESEE
T ss_pred EEEEccCCHHHHHHHHHHHHcC-Ccccccccccccccc--------c--cccceEEEEEeeccccccccccccccCceEE
Confidence 7999999999999999999999 477777776542110 0 1112899999999999999999986 5999
Q ss_pred EEcCCCCC---CCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCccccccCCCCcCCCCCCCCCCCCCCchHHHHHH
Q 047227 88 FHMAAPNS---SINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDFYSATKA 164 (485)
Q Consensus 88 ih~aa~~~---~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy~~~~~~~~~~~e~~~~~~~~~~~Y~~sK~ 164 (485)
||+|+... ...++...++.|+.++.+++++|++.+++++||+||..+|++. ...+.+|+.+ ..|.++|+.+|.
T Consensus 70 i~~a~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~i~~sS~~~y~~~--~~~~~~e~~~--~~~~~~Y~~~K~ 145 (236)
T PF01370_consen 70 IHLAAFSSNPESFEDPEEIIEANVQGTRNLLEAAREAGVKRFIFLSSASVYGDP--DGEPIDEDSP--INPLSPYGASKR 145 (236)
T ss_dssp EEEBSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTSEEEEEEEGGGGTSS--SSSSBETTSG--CCHSSHHHHHHH
T ss_pred EEeecccccccccccccccccccccccccccccccccccccccccccccccccc--cccccccccc--cccccccccccc
Confidence 99999532 2246778899999999999999999999999999999999765 2233345443 378899999999
Q ss_pred HHHHHHHHHhCCCCceEEEEecCCcccCC-----CCCChHHHHHHHHcCCCeEEecCCCceeecccHHHHHHHHHHHHHH
Q 047227 165 EGEALVIKANGTNGLLTCCIRPSSIFGPG-----DRLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICAERA 239 (485)
Q Consensus 165 ~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~-----~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~D~a~a~~~~~~~ 239 (485)
.+|++++.+.++++++++++||+++|||+ ...+++.++..+.+|+++.+++++++.++|+|++|+|++++.++++
T Consensus 146 ~~e~~~~~~~~~~~~~~~~~R~~~vyG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~ 225 (236)
T PF01370_consen 146 AAEELLRDYAKKYGLRVTILRPPNVYGPGNPNNNSSSFLPSLIRQALKGKPIKIPGDGSQVRDFIHVDDLAEAIVAALEN 225 (236)
T ss_dssp HHHHHHHHHHHHHTSEEEEEEESEEESTTSSSSSTSSHHHHHHHHHHTTSSEEEESTSSCEEEEEEHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccchhhHHhhcCCcccccCCCCCccceEEHHHHHHHHHHHHhC
Confidence 99999999988889999999999999999 2357888999999999999999999999999999999999999884
Q ss_pred hccccchhhccCCcEEEee
Q 047227 240 LASEVTVAEKAAGQAYFVT 258 (485)
Q Consensus 240 ~~~~~~~~~~~~g~~ynv~ 258 (485)
+...+++|||+
T Consensus 226 --------~~~~~~~yNig 236 (236)
T PF01370_consen 226 --------PKAAGGIYNIG 236 (236)
T ss_dssp --------SCTTTEEEEES
T ss_pred --------CCCCCCEEEeC
Confidence 32468999986
|
The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B .... |
| >KOG1431 consensus GDP-L-fucose synthetase [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-32 Score=238.80 Aligned_cols=287 Identities=21% Similarity=0.228 Sum_probs=226.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCc--eEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc--
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMF--SVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ-- 82 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 82 (485)
+|+||||||+|.+|+++++.+.+.|.. +...... -.+|+++.++.+.+|+
T Consensus 1 s~kIlVtGg~GLVGsAi~~vv~~q~~~~e~wvf~~s--------------------------kd~DLt~~a~t~~lF~~e 54 (315)
T KOG1431|consen 1 SKKILVTGGTGLVGSAIVKVVQEQGFDDENWVFIGS--------------------------KDADLTNLADTRALFESE 54 (315)
T ss_pred CceEEEecCCchHHHHHHHHHHhcCCCCcceEEecc--------------------------ccccccchHHHHHHHhcc
Confidence 379999999999999999999998741 2222211 1379999999999996
Q ss_pred CCCEEEEcCC----CCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCccccccCCCCcCCCCCCCCC--CCCC-
Q 047227 83 GAEVVFHMAA----PNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVVFDGVHGIINGNEALPY--PPKH- 155 (485)
Q Consensus 83 ~~d~Vih~aa----~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy~~~~~~~~~~~e~~~~--~~~~- 155 (485)
++..|||+|| .......+..++..|++--.|++..|-+.|++++|++.|.++|.+ ...+|.+|++-. |+.|
T Consensus 55 kPthVIhlAAmVGGlf~N~~ynldF~r~Nl~indNVlhsa~e~gv~K~vsclStCIfPd--kt~yPIdEtmvh~gpphps 132 (315)
T KOG1431|consen 55 KPTHVIHLAAMVGGLFHNNTYNLDFIRKNLQINDNVLHSAHEHGVKKVVSCLSTCIFPD--KTSYPIDETMVHNGPPHPS 132 (315)
T ss_pred CCceeeehHhhhcchhhcCCCchHHHhhcceechhHHHHHHHhchhhhhhhcceeecCC--CCCCCCCHHHhccCCCCCC
Confidence 4999999999 233445677899999999999999999999999999999999954 445666776543 2333
Q ss_pred CchHHHHHHHHHHHHHHHhCCCCceEEEEecCCcccCCCC------CChHHHHHHH----HcCC-CeEEecCCCceeecc
Q 047227 156 NDFYSATKAEGEALVIKANGTNGLLTCCIRPSSIFGPGDR------LLVPSLVAAA----RAGK-SKFIIGDGNNVYDFT 224 (485)
Q Consensus 156 ~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~------~~~~~~~~~~----~~g~-~~~~~g~g~~~~~~i 224 (485)
.-.|+..|.++.-.-+.|..++|...+..-|.|+|||.++ ..+|.+++++ ..|- .+.++|+|.+.|+|+
T Consensus 133 N~gYsyAKr~idv~n~aY~~qhg~~~tsviPtNvfGphDNfnpe~sHVlPali~r~h~ak~~gtd~~~VwGsG~PlRqFi 212 (315)
T KOG1431|consen 133 NFGYSYAKRMIDVQNQAYRQQHGRDYTSVIPTNVFGPHDNFNPENSHVLPALIHRFHEAKRNGTDELTVWGSGSPLRQFI 212 (315)
T ss_pred chHHHHHHHHHHHHHHHHHHHhCCceeeeccccccCCCCCCCcccccchHHHHHHHHHHHhcCCceEEEecCCChHHHHh
Confidence 3479999999988889999999999999999999999885 3567766544 3343 688999999999999
Q ss_pred cHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCC--CccHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHH
Q 047227 225 YVANVAHAHICAERALASEVTVAEKAAGQAYFVTNME--SIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELTYR 302 (485)
Q Consensus 225 ~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~--~~t~~el~~~i~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~ 302 (485)
|++|+|+++++++++- + .-+..+++.++ .+|++|+++.+.++++..-...+-.
T Consensus 213 ys~DLA~l~i~vlr~Y-------~--~vEpiils~ge~~EVtI~e~aeaV~ea~~F~G~l~~Dt---------------- 267 (315)
T KOG1431|consen 213 YSDDLADLFIWVLREY-------E--GVEPIILSVGESDEVTIREAAEAVVEAVDFTGKLVWDT---------------- 267 (315)
T ss_pred hHhHHHHHHHHHHHhh-------c--CccceEeccCccceeEHHHHHHHHHHHhCCCceEEeec----------------
Confidence 9999999999998742 2 23567788876 8999999999999999765543311
Q ss_pred HhCCCCCCCCCCCHHHHHhhccceeeehhhHHhhcCCCCCCC-hHHHHHHHHHHHHHhHhc
Q 047227 303 LLGPYGMKVPQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVP-LEEGIKRTVDSYSHLRAE 362 (485)
Q Consensus 303 ~~~~~~~~~p~~~~~~~~~~~~~~~~d~~ka~~~lG~~p~~~-l~e~i~~~~~~~~~~~~~ 362 (485)
.-+..+ ...+.|++|++. |+|.|+.+ +++++.++++||.+....
T Consensus 268 -------tK~DGq--------~kKtasnsKL~s-l~pd~~ft~l~~ai~~t~~Wy~~Ny~q 312 (315)
T KOG1431|consen 268 -------TKSDGQ--------FKKTASNSKLRS-LLPDFKFTPLEQAISETVQWYLDNYEQ 312 (315)
T ss_pred -------cCCCCC--------cccccchHHHHH-hCCCcccChHHHHHHHHHHHHHHhHHh
Confidence 111111 123579999998 79998886 999999999999987765
|
|
| >PRK05865 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-32 Score=290.16 Aligned_cols=259 Identities=21% Similarity=0.226 Sum_probs=197.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCCCEE
Q 047227 8 RLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGAEVV 87 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~d~V 87 (485)
|+|+||||+||||+++++.|+++| ++|++++|..... ...+++++.+|++|.+++.++++++|+|
T Consensus 1 MkILVTGATGfIGs~La~~Ll~~G-~~Vv~l~R~~~~~--------------~~~~v~~v~gDL~D~~~l~~al~~vD~V 65 (854)
T PRK05865 1 MRIAVTGASGVLGRGLTARLLSQG-HEVVGIARHRPDS--------------WPSSADFIAADIRDATAVESAMTGADVV 65 (854)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCc-CEEEEEECCchhh--------------cccCceEEEeeCCCHHHHHHHHhCCCEE
Confidence 589999999999999999999999 5899998763210 0135789999999999999999999999
Q ss_pred EEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCccccccCCCCcCCCCCCCCCCCCCCchHHHHHHHHH
Q 047227 88 FHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDFYSATKAEGE 167 (485)
Q Consensus 88 ih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy~~~~~~~~~~~e~~~~~~~~~~~Y~~sK~~~E 167 (485)
||+|+.... .+++|+.++.+++++|++.++++|||+||.. |..+|
T Consensus 66 VHlAa~~~~------~~~vNv~GT~nLLeAa~~~gvkr~V~iSS~~-----------------------------K~aaE 110 (854)
T PRK05865 66 AHCAWVRGR------NDHINIDGTANVLKAMAETGTGRIVFTSSGH-----------------------------QPRVE 110 (854)
T ss_pred EECCCcccc------hHHHHHHHHHHHHHHHHHcCCCeEEEECCcH-----------------------------HHHHH
Confidence 999984321 4689999999999999999999999999842 88899
Q ss_pred HHHHHHhCCCCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCceeecccHHHHHHHHHHHHHHhccccchh
Q 047227 168 ALVIKANGTNGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICAERALASEVTVA 247 (485)
Q Consensus 168 ~~~~~~~~~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~ 247 (485)
+++.+ ++++++++||+++|||+. +.++..+.. .++...|+++..++|+|++|+|+++..+++.
T Consensus 111 ~ll~~----~gl~~vILRp~~VYGP~~----~~~i~~ll~-~~v~~~G~~~~~~dfIhVdDVA~Ai~~aL~~-------- 173 (854)
T PRK05865 111 QMLAD----CGLEWVAVRCALIFGRNV----DNWVQRLFA-LPVLPAGYADRVVQVVHSDDAQRLLVRALLD-------- 173 (854)
T ss_pred HHHHH----cCCCEEEEEeceEeCCCh----HHHHHHHhc-CceeccCCCCceEeeeeHHHHHHHHHHHHhC--------
Confidence 98865 689999999999999973 333433332 2333445566778999999999999988752
Q ss_pred hccCCcEEEeeCCCCccHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCCCCCCCCHHHHHhhcccee
Q 047227 248 EKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELTYRLLGPYGMKVPQLTPSRVRLLSCSRT 327 (485)
Q Consensus 248 ~~~~g~~ynv~~~~~~t~~el~~~i~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 327 (485)
+...+++||+++++.+|+.|+++.+.+... .++..... ..+ . +...........
T Consensus 174 ~~~~ggvyNIgsg~~~Si~EIae~l~~~~~------~v~~~~~~-----------~~~----~-----~~~~~~~~~~~~ 227 (854)
T PRK05865 174 TVIDSGPVNLAAPGELTFRRIAAALGRPMV------PIGSPVLR-----------RVT----S-----FAELELLHSAPL 227 (854)
T ss_pred CCcCCCeEEEECCCcccHHHHHHHHhhhhc------cCCchhhh-----------hcc----c-----hhhhhcccCCcc
Confidence 113467999999999999999998876431 11111000 000 0 000111112335
Q ss_pred eehhhHHhhcCCCCCCChHHHHHHHHHHHHHh
Q 047227 328 FDCSKAKDLLGYMPIVPLEEGIKRTVDSYSHL 359 (485)
Q Consensus 328 ~d~~ka~~~lG~~p~~~l~e~i~~~~~~~~~~ 359 (485)
+|++|+++.|||+|+++++++++++++||+.+
T Consensus 228 ~D~sKar~~LGw~P~~sLeeGL~dti~~~r~r 259 (854)
T PRK05865 228 MDVTLLRDRWGFQPAWNAEECLEDFTLAVRGR 259 (854)
T ss_pred CCHHHHHHHhCCCCCCCHHHHHHHHHHHHHhh
Confidence 79999999999999999999999999999874
|
|
| >COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-31 Score=250.32 Aligned_cols=273 Identities=24% Similarity=0.335 Sum_probs=220.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc--CCC
Q 047227 8 RLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ--GAE 85 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--~~d 85 (485)
|+|||||++|++|++|++.|. .+ ++|..+++.. .|++|++.+.++++ ++|
T Consensus 1 M~iLi~G~~GqLG~~L~~~l~-~~-~~v~a~~~~~--------------------------~Ditd~~~v~~~i~~~~PD 52 (281)
T COG1091 1 MKILITGANGQLGTELRRALP-GE-FEVIATDRAE--------------------------LDITDPDAVLEVIRETRPD 52 (281)
T ss_pred CcEEEEcCCChHHHHHHHHhC-CC-ceEEeccCcc--------------------------ccccChHHHHHHHHhhCCC
Confidence 459999999999999999998 43 6888876642 79999999999997 489
Q ss_pred EEEEcCC---CCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCccccccCCC-CcCCCCCCCCCCCCCCchHHH
Q 047227 86 VVFHMAA---PNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVVFDGVH-GIINGNEALPYPPKHNDFYSA 161 (485)
Q Consensus 86 ~Vih~aa---~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy~~~~~-~~~~~~e~~~~~~~~~~~Y~~ 161 (485)
+|||+|+ ++..+.+++..+.+|..++.|++++|++.|. ++||+||..|| ||.. .++.+++ +..|.+.||.
T Consensus 53 vVIn~AAyt~vD~aE~~~e~A~~vNa~~~~~lA~aa~~~ga-~lVhiSTDyVF-DG~~~~~Y~E~D----~~~P~nvYG~ 126 (281)
T COG1091 53 VVINAAAYTAVDKAESEPELAFAVNATGAENLARAAAEVGA-RLVHISTDYVF-DGEKGGPYKETD----TPNPLNVYGR 126 (281)
T ss_pred EEEECccccccccccCCHHHHHHhHHHHHHHHHHHHHHhCC-eEEEeecceEe-cCCCCCCCCCCC----CCCChhhhhH
Confidence 9999999 5667778899999999999999999999997 89999998886 3444 3333333 3578999999
Q ss_pred HHHHHHHHHHHHhCCCCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCceeecccHHHHHHHHHHHHHHhc
Q 047227 162 TKAEGEALVIKANGTNGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICAERALA 241 (485)
Q Consensus 162 sK~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~D~a~a~~~~~~~~~ 241 (485)
||..+|..++.+. -+..|+|.+.+||...+.++..+++.+.+|+++.+..| +..+.+++.|+|+++..+++..
T Consensus 127 sKl~GE~~v~~~~----~~~~I~Rtswv~g~~g~nFv~tml~la~~~~~l~vv~D--q~gsPt~~~dlA~~i~~ll~~~- 199 (281)
T COG1091 127 SKLAGEEAVRAAG----PRHLILRTSWVYGEYGNNFVKTMLRLAKEGKELKVVDD--QYGSPTYTEDLADAILELLEKE- 199 (281)
T ss_pred HHHHHHHHHHHhC----CCEEEEEeeeeecCCCCCHHHHHHHHhhcCCceEEECC--eeeCCccHHHHHHHHHHHHhcc-
Confidence 9999999999964 45799999999999888899999999999999888755 8889999999999999987632
Q ss_pred cccchhhccCCcEEEeeCCCCccHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCCCCCCCCHHHHHh
Q 047227 242 SEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELTYRLLGPYGMKVPQLTPSRVRL 321 (485)
Q Consensus 242 ~~~~~~~~~~g~~ynv~~~~~~t~~el~~~i~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 321 (485)
..+++||+++.+.+||.||++.|.+..+.+...+..... ...+.+--.
T Consensus 200 --------~~~~~yH~~~~g~~Swydfa~~I~~~~~~~~~v~~~~~~------------------~~~~~~a~R------ 247 (281)
T COG1091 200 --------KEGGVYHLVNSGECSWYEFAKAIFEEAGVDGEVIEPIAS------------------AEYPTPAKR------ 247 (281)
T ss_pred --------ccCcEEEEeCCCcccHHHHHHHHHHHhCCCccccccccc------------------cccCccCCC------
Confidence 334499999999999999999999999866533311110 000111101
Q ss_pred hccceeeehhhHHhhcCCCCCCChHHHHHHHHHH
Q 047227 322 LSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDS 355 (485)
Q Consensus 322 ~~~~~~~d~~ka~~~lG~~p~~~l~e~i~~~~~~ 355 (485)
.....+|+.|+++.+|+.|. ++++.++++++.
T Consensus 248 -P~~S~L~~~k~~~~~g~~~~-~w~~~l~~~~~~ 279 (281)
T COG1091 248 -PANSSLDTKKLEKAFGLSLP-EWREALKALLDE 279 (281)
T ss_pred -CcccccchHHHHHHhCCCCc-cHHHHHHHHHhh
Confidence 11345799999999999885 899999998864
|
|
| >PLN02996 fatty acyl-CoA reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-32 Score=278.46 Aligned_cols=268 Identities=21% Similarity=0.224 Sum_probs=198.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCC--ceEEEeecCCccccCCcc-chhhhhh------------h---hcCCCeEEE
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDM--FSVRIADLSDSIALEPHE-EQGILGE------------A---LRSGRAHYV 67 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~--~~V~~~~r~~~~~~~~~~-~~~~~~~------------~---~~~~~v~~~ 67 (485)
++++|||||||||+|+++++.|++.+. .+|+++.|........+. ....... . ....+++++
T Consensus 10 ~~k~VlvTGaTGFlG~~ll~~LL~~~~~v~~I~~LvR~~~~~~~~~rl~~~~~~~~~f~~~~~~~~~~~~~~~~~kv~~i 89 (491)
T PLN02996 10 ENKTILVTGATGFLAKIFVEKILRVQPNVKKLYLLLRASDAKSATQRLHDEVIGKDLFKVLREKLGENLNSLISEKVTPV 89 (491)
T ss_pred CCCeEEEeCCCcHHHHHHHHHHHhhCCCCCEEEEEEeCCCCCCHHHHHHHHHhhchHHHHHHHhcchhhhhhhhcCEEEE
Confidence 578999999999999999999998642 267888886542111000 0000000 0 012679999
Q ss_pred EecCC-------CHHHHHHHhcCCCEEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhc-CCCEEEEecCccccccCC
Q 047227 68 SFDLR-------HKAQVLQALQGAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAEL-KVKRLIYTSSPSVVFDGV 139 (485)
Q Consensus 68 ~~Dl~-------d~~~l~~~~~~~d~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~-~v~r~V~~SS~~vy~~~~ 139 (485)
.+|++ |.+.+.++++++|+|||+||......++....++|+.||.+++++|++. ++++|||+||++|||...
T Consensus 90 ~GDl~~~~LGLs~~~~~~~l~~~vD~ViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~k~~V~vST~~vyG~~~ 169 (491)
T PLN02996 90 PGDISYDDLGVKDSNLREEMWKEIDIVVNLAATTNFDERYDVALGINTLGALNVLNFAKKCVKVKMLLHVSTAYVCGEKS 169 (491)
T ss_pred ecccCCcCCCCChHHHHHHHHhCCCEEEECccccCCcCCHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEeeeEEecCCC
Confidence 99998 5555778888999999999965555678889999999999999999987 689999999999997533
Q ss_pred CC----cCCCCCC---------------------------C---------------C-CCCCCCchHHHHHHHHHHHHHH
Q 047227 140 HG----IINGNEA---------------------------L---------------P-YPPKHNDFYSATKAEGEALVIK 172 (485)
Q Consensus 140 ~~----~~~~~e~---------------------------~---------------~-~~~~~~~~Y~~sK~~~E~~~~~ 172 (485)
.. .++..++ . + ....+.+.|+.||+++|+++..
T Consensus 170 ~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pn~Y~~TK~~aE~lv~~ 249 (491)
T PLN02996 170 GLILEKPFHMGETLNGNRKLDINEEKKLVKEKLKELNEQDASEEEITQAMKDLGMERAKLHGWPNTYVFTKAMGEMLLGN 249 (491)
T ss_pred ceeeeecCCCcccccccccCChHHHHHHHHHHHHHHHhhcCCHHHHHHHhhhhchhHHHhCCCCCchHhhHHHHHHHHHH
Confidence 11 1110000 0 0 0123457899999999999998
Q ss_pred HhCCCCceEEEEecCCcccCCCCC---Ch------HHHHHHHHcCCCeEEecCCCceeecccHHHHHHHHHHHHHHhccc
Q 047227 173 ANGTNGLLTCCIRPSSIFGPGDRL---LV------PSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICAERALASE 243 (485)
Q Consensus 173 ~~~~~g~~~~ilRp~~v~Gp~~~~---~~------~~~~~~~~~g~~~~~~g~g~~~~~~i~v~D~a~a~~~~~~~~~~~ 243 (485)
+. .+++++++||++||||+..+ ++ ..++..+..|....++|+|++.+|++||+|++++++.++.....
T Consensus 250 ~~--~~lpv~i~RP~~V~G~~~~p~~gwi~~~~~~~~i~~~~~~g~~~~~~gdg~~~~D~v~Vddvv~a~l~a~~~~~~- 326 (491)
T PLN02996 250 FK--ENLPLVIIRPTMITSTYKEPFPGWIEGLRTIDSVIVGYGKGKLTCFLADPNSVLDVIPADMVVNAMIVAMAAHAG- 326 (491)
T ss_pred hc--CCCCEEEECCCEeccCCcCCCCCcccchhhHHHHHHHhccceEeEEecCCCeecceecccHHHHHHHHHHHHhhc-
Confidence 75 38999999999999987643 22 33445556777777899999999999999999999988764211
Q ss_pred cchhhccCCcEEEeeCC--CCccHHHHHHHHHHHcCCCC
Q 047227 244 VTVAEKAAGQAYFVTNM--ESIKFWEFVSLILEGLGYQR 280 (485)
Q Consensus 244 ~~~~~~~~g~~ynv~~~--~~~t~~el~~~i~~~~g~~~ 280 (485)
....+++||++++ .++|+.|+++.+.+.++..+
T Consensus 327 ----~~~~~~vYNi~s~~~~~~s~~ei~~~~~~~~~~~p 361 (491)
T PLN02996 327 ----GQGSEIIYHVGSSLKNPVKFSNLHDFAYRYFSKNP 361 (491)
T ss_pred ----cCCCCcEEEecCCCCCcccHHHHHHHHHHHhhhCC
Confidence 1124679999998 89999999999998886543
|
|
| >PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-31 Score=268.17 Aligned_cols=261 Identities=18% Similarity=0.173 Sum_probs=207.6
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc--
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ-- 82 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 82 (485)
.++|+|||||||||||+++++.|+++| ++|++++|........... .......++++++.+|++|++++.++++
T Consensus 58 ~~~~kVLVtGatG~IG~~l~~~Ll~~G-~~V~~l~R~~~~~~~~~~~---~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~ 133 (390)
T PLN02657 58 PKDVTVLVVGATGYIGKFVVRELVRRG-YNVVAVAREKSGIRGKNGK---EDTKKELPGAEVVFGDVTDADSLRKVLFSE 133 (390)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEEechhhccccchh---hHHhhhcCCceEEEeeCCCHHHHHHHHHHh
Confidence 356899999999999999999999999 6899998875421110000 0000113578999999999999999997
Q ss_pred --CCCEEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCccccccCCCCcCCCCCCCCCCCCCCchHH
Q 047227 83 --GAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDFYS 160 (485)
Q Consensus 83 --~~d~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy~~~~~~~~~~~e~~~~~~~~~~~Y~ 160 (485)
++|+|||++++... .....+++|+.++.+++++|++.|++|||++||.++| .|...|.
T Consensus 134 ~~~~D~Vi~~aa~~~~--~~~~~~~vn~~~~~~ll~aa~~~gv~r~V~iSS~~v~------------------~p~~~~~ 193 (390)
T PLN02657 134 GDPVDVVVSCLASRTG--GVKDSWKIDYQATKNSLDAGREVGAKHFVLLSAICVQ------------------KPLLEFQ 193 (390)
T ss_pred CCCCcEEEECCccCCC--CCccchhhHHHHHHHHHHHHHHcCCCEEEEEeecccc------------------CcchHHH
Confidence 59999999884321 1234578899999999999999999999999998765 2345688
Q ss_pred HHHHHHHHHHHHHhCCCCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCcee-ecccHHHHHHHHHHHHHH
Q 047227 161 ATKAEGEALVIKANGTNGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVY-DFTYVANVAHAHICAERA 239 (485)
Q Consensus 161 ~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~~-~~i~v~D~a~a~~~~~~~ 239 (485)
.+|..+|+.+.. ...+++++++||+.+||+. ..++..+..|+++.++|+|+..+ ++||++|+|++++.++.
T Consensus 194 ~sK~~~E~~l~~--~~~gl~~tIlRp~~~~~~~-----~~~~~~~~~g~~~~~~GdG~~~~~~~I~v~DlA~~i~~~~~- 265 (390)
T PLN02657 194 RAKLKFEAELQA--LDSDFTYSIVRPTAFFKSL-----GGQVEIVKDGGPYVMFGDGKLCACKPISEADLASFIADCVL- 265 (390)
T ss_pred HHHHHHHHHHHh--ccCCCCEEEEccHHHhccc-----HHHHHhhccCCceEEecCCcccccCceeHHHHHHHHHHHHh-
Confidence 999999999876 3478999999999999752 34566777888888899998755 68999999999998875
Q ss_pred hccccchhhccCCcEEEeeCC-CCccHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHh
Q 047227 240 LASEVTVAEKAAGQAYFVTNM-ESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELTYRLL 304 (485)
Q Consensus 240 ~~~~~~~~~~~~g~~ynv~~~-~~~t~~el~~~i~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~ 304 (485)
.+...+++||++++ +.+|+.|+++.+.+.+|++.+...+|.+.+..+..+.+.+...+
T Consensus 266 -------~~~~~~~~~~Iggp~~~~S~~Eia~~l~~~lG~~~~~~~vp~~~~~~~~~~~~~~~~~~ 324 (390)
T PLN02657 266 -------DESKINKVLPIGGPGKALTPLEQGEMLFRILGKEPKFFKVPIQIMDFAIGVLDFLAKIF 324 (390)
T ss_pred -------CccccCCEEEcCCCCcccCHHHHHHHHHHHhCCCCceEEcCHHHHHHHHHHHHHhhhhC
Confidence 22356789999986 69999999999999999998889999998877777766665544
|
|
| >PLN02583 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-30 Score=253.77 Aligned_cols=251 Identities=20% Similarity=0.176 Sum_probs=181.5
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhh-cCCCeEEEEecCCCHHHHHHHhcC
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEAL-RSGRAHYVSFDLRHKAQVLQALQG 83 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~~ 83 (485)
.++++||||||+||||+++++.|+++| ++|+++.|+..... . .. .+.... ...+++++.+|++|.+++.+++.+
T Consensus 4 ~~~k~vlVTGatG~IG~~lv~~Ll~~G-~~V~~~~R~~~~~~-~-~~--~~~~l~~~~~~~~~~~~Dl~d~~~~~~~l~~ 78 (297)
T PLN02583 4 ESSKSVCVMDASGYVGFWLVKRLLSRG-YTVHAAVQKNGETE-I-EK--EIRGLSCEEERLKVFDVDPLDYHSILDALKG 78 (297)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHhCC-CEEEEEEcCchhhh-H-HH--HHHhcccCCCceEEEEecCCCHHHHHHHHcC
Confidence 346799999999999999999999999 59998887532110 0 00 011110 124688999999999999999999
Q ss_pred CCEEEEcCCCCC-CCCchhhhHHHHHHHHHHHHHHHHhc-CCCEEEEecCccccccC-C--CCcCCCCCCCCCCC----C
Q 047227 84 AEVVFHMAAPNS-SINNHKLHHSVNVEGTKNVIDACAEL-KVKRLIYTSSPSVVFDG-V--HGIINGNEALPYPP----K 154 (485)
Q Consensus 84 ~d~Vih~aa~~~-~~~~~~~~~~~nv~~t~~ll~a~~~~-~v~r~V~~SS~~vy~~~-~--~~~~~~~e~~~~~~----~ 154 (485)
+|.|+|+++... ...+++.++++|+.++.+++++|.+. +++|+|++||.++++.+ . ....+.+|+.+.+. .
T Consensus 79 ~d~v~~~~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~~v~riV~~SS~~a~~~~~~~~~~~~~~~E~~~~~~~~~~~ 158 (297)
T PLN02583 79 CSGLFCCFDPPSDYPSYDEKMVDVEVRAAHNVLEACAQTDTIEKVVFTSSLTAVIWRDDNISTQKDVDERSWSDQNFCRK 158 (297)
T ss_pred CCEEEEeCccCCcccccHHHHHHHHHHHHHHHHHHHHhcCCccEEEEecchHheecccccCCCCCCCCcccCCCHHHHhh
Confidence 999999887332 22345678999999999999999987 58999999998876422 1 12223455433211 1
Q ss_pred CCchHHHHHHHHHHHHHHHhCCCCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCceeecccHHHHHHHHH
Q 047227 155 HNDFYSATKAEGEALVIKANGTNGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHI 234 (485)
Q Consensus 155 ~~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~D~a~a~~ 234 (485)
+...|+.||..+|++++.+++..+++++++||++||||+.....+ ...+.. ...++ ..++|+||+|+|++++
T Consensus 159 ~~~~Y~~sK~~aE~~~~~~~~~~gi~~v~lrp~~v~Gp~~~~~~~-----~~~~~~-~~~~~--~~~~~v~V~Dva~a~~ 230 (297)
T PLN02583 159 FKLWHALAKTLSEKTAWALAMDRGVNMVSINAGLLMGPSLTQHNP-----YLKGAA-QMYEN--GVLVTVDVNFLVDAHI 230 (297)
T ss_pred cccHHHHHHHHHHHHHHHHHHHhCCcEEEEcCCcccCCCCCCchh-----hhcCCc-ccCcc--cCcceEEHHHHHHHHH
Confidence 223799999999999999887789999999999999998653222 222322 22223 3468999999999999
Q ss_pred HHHHHhccccchhhccCCcEEEeeCCCCccHHHHHHHHHHHcC
Q 047227 235 CAERALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLG 277 (485)
Q Consensus 235 ~~~~~~~~~~~~~~~~~g~~ynv~~~~~~t~~el~~~i~~~~g 277 (485)
++++. +...+ .|+++++....+.++.+.+.+..+
T Consensus 231 ~al~~--------~~~~~-r~~~~~~~~~~~~~~~~~~~~~~p 264 (297)
T PLN02583 231 RAFED--------VSSYG-RYLCFNHIVNTEEDAVKLAQMLSP 264 (297)
T ss_pred HHhcC--------cccCC-cEEEecCCCccHHHHHHHHHHhCC
Confidence 99873 22334 798888665556788888888765
|
|
| >TIGR01777 yfcH conserved hypothetical protein TIGR01777 | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.4e-30 Score=251.50 Aligned_cols=284 Identities=19% Similarity=0.244 Sum_probs=199.3
Q ss_pred EEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCCCEEEE
Q 047227 10 CVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGAEVVFH 89 (485)
Q Consensus 10 iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~d~Vih 89 (485)
||||||+||||+++++.|+++| ++|++++|......... ... ..|+.+ ..+.+.++++|+|||
T Consensus 1 vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~-----------~~~----~~~~~~-~~~~~~~~~~D~Vvh 63 (292)
T TIGR01777 1 ILITGGTGFIGRALTQRLTKDG-HEVTILTRSPPAGANTK-----------WEG----YKPWAP-LAESEALEGADAVIN 63 (292)
T ss_pred CEEEcccchhhHHHHHHHHHcC-CEEEEEeCCCCCCCccc-----------cee----eecccc-cchhhhcCCCCEEEE
Confidence 6999999999999999999999 69999998765221100 001 112222 345667789999999
Q ss_pred cCCCCCC-----CCchhhhHHHHHHHHHHHHHHHHhcCCC--EEEEecCccccccCCCCcCCCCCCCCCCCCCCchHHHH
Q 047227 90 MAAPNSS-----INNHKLHHSVNVEGTKNVIDACAELKVK--RLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDFYSAT 162 (485)
Q Consensus 90 ~aa~~~~-----~~~~~~~~~~nv~~t~~ll~a~~~~~v~--r~V~~SS~~vy~~~~~~~~~~~e~~~~~~~~~~~Y~~s 162 (485)
+|+.... ...+..++++|+.++.+++++|++.+++ +||++||..+|++.... +.+|+.+ ..+.+.|+..
T Consensus 64 ~a~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~~i~~S~~~~yg~~~~~--~~~E~~~--~~~~~~~~~~ 139 (292)
T TIGR01777 64 LAGEPIADKRWTEERKQEIRDSRIDTTRALVEAIAAAEQKPKVFISASAVGYYGTSEDR--VFTEEDS--PAGDDFLAEL 139 (292)
T ss_pred CCCCCcccccCCHHHHHHHHhcccHHHHHHHHHHHhcCCCceEEEEeeeEEEeCCCCCC--CcCcccC--CCCCChHHHH
Confidence 9994321 1244567899999999999999999863 57777777788643322 3344432 2345567777
Q ss_pred HHHHHHHHHHHhCCCCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCceeecccHHHHHHHHHHHHHHhcc
Q 047227 163 KAEGEALVIKANGTNGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICAERALAS 242 (485)
Q Consensus 163 K~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~D~a~a~~~~~~~~~~ 242 (485)
|...|..+..+. +.+++++++||+++|||++. ..+.+......... ..+|+++++++|+|++|+|+++..+++.
T Consensus 140 ~~~~e~~~~~~~-~~~~~~~ilR~~~v~G~~~~-~~~~~~~~~~~~~~-~~~g~~~~~~~~i~v~Dva~~i~~~l~~--- 213 (292)
T TIGR01777 140 CRDWEEAAQAAE-DLGTRVVLLRTGIVLGPKGG-ALAKMLPPFRLGLG-GPLGSGRQWFSWIHIEDLVQLILFALEN--- 213 (292)
T ss_pred HHHHHHHhhhch-hcCCceEEEeeeeEECCCcc-hhHHHHHHHhcCcc-cccCCCCcccccEeHHHHHHHHHHHhcC---
Confidence 777787766543 46899999999999999753 34444333322221 1257889999999999999999998762
Q ss_pred ccchhhccCCcEEEeeCCCCccHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCCCCCCCCHHHHHhh
Q 047227 243 EVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELTYRLLGPYGMKVPQLTPSRVRLL 322 (485)
Q Consensus 243 ~~~~~~~~~g~~ynv~~~~~~t~~el~~~i~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 322 (485)
+ ..++.||+++++++++.|+++.+.+.+|.+.+ +.+|.++.... ++ ..+ ...
T Consensus 214 -----~-~~~g~~~~~~~~~~s~~di~~~i~~~~g~~~~-~~~p~~~~~~~----------~~----~~~-------~~~ 265 (292)
T TIGR01777 214 -----A-SISGPVNATAPEPVRNKEFAKALARALHRPAF-FPVPAFVLRAL----------LG----EMA-------DLL 265 (292)
T ss_pred -----c-ccCCceEecCCCccCHHHHHHHHHHHhCCCCc-CcCCHHHHHHH----------hc----hhh-------HHH
Confidence 1 22458999999999999999999999998653 55777643221 11 011 122
Q ss_pred ccceeeehhhHHhhcCCCCCC-ChHHHH
Q 047227 323 SCSRTFDCSKAKDLLGYMPIV-PLEEGI 349 (485)
Q Consensus 323 ~~~~~~d~~ka~~~lG~~p~~-~l~e~i 349 (485)
..++..+++|+++ +||+|.+ +++|++
T Consensus 266 ~~~~~~~~~~~~~-~g~~~~~~~~~~~~ 292 (292)
T TIGR01777 266 LKGQRVLPEKLLE-AGFQFQYPDLDEAL 292 (292)
T ss_pred hCCcccccHHHHh-cCCeeeCcChhhcC
Confidence 3356779999986 9999998 488763
|
This model represents a clade of proteins of unknown function including the E. coli yfcH protein. |
| >PLN02778 3,5-epimerase/4-reductase | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.1e-29 Score=244.02 Aligned_cols=272 Identities=16% Similarity=0.138 Sum_probs=191.3
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc--
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ-- 82 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 82 (485)
...|+||||||+||||+++++.|+++|+ +|+.. .+|+.|.+.+...++
T Consensus 7 ~~~~kiLVtG~tGfiG~~l~~~L~~~g~-~V~~~-----------------------------~~~~~~~~~v~~~l~~~ 56 (298)
T PLN02778 7 SATLKFLIYGKTGWIGGLLGKLCQEQGI-DFHYG-----------------------------SGRLENRASLEADIDAV 56 (298)
T ss_pred CCCCeEEEECCCCHHHHHHHHHHHhCCC-EEEEe-----------------------------cCccCCHHHHHHHHHhc
Confidence 4458999999999999999999999994 77532 134556666766665
Q ss_pred CCCEEEEcCCCCC------CCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCccccccCCCC----cCCCCCCCCCC
Q 047227 83 GAEVVFHMAAPNS------SINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVVFDGVHG----IINGNEALPYP 152 (485)
Q Consensus 83 ~~d~Vih~aa~~~------~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy~~~~~~----~~~~~e~~~~~ 152 (485)
++|+|||+||... +..++..++++|+.++.+++++|++.|++ ++++||.++|+.+... ..+.+|+.+ +
T Consensus 57 ~~D~ViH~Aa~~~~~~~~~~~~~p~~~~~~Nv~gt~~ll~aa~~~gv~-~v~~sS~~vy~~~~~~p~~~~~~~~Ee~~-p 134 (298)
T PLN02778 57 KPTHVFNAAGVTGRPNVDWCESHKVETIRANVVGTLTLADVCRERGLV-LTNYATGCIFEYDDAHPLGSGIGFKEEDT-P 134 (298)
T ss_pred CCCEEEECCcccCCCCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCC-EEEEecceEeCCCCCCCcccCCCCCcCCC-C
Confidence 6999999999432 33578889999999999999999999986 5666777888643211 112333322 3
Q ss_pred CCCCchHHHHHHHHHHHHHHHhCCCCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCceeecccHHHHHHH
Q 047227 153 PKHNDFYSATKAEGEALVIKANGTNGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHA 232 (485)
Q Consensus 153 ~~~~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~D~a~a 232 (485)
..+.+.|+.+|.++|.++..+++ ..++|+...+|++.. ....++..+..++.+...+ .+|+|++|++++
T Consensus 135 ~~~~s~Yg~sK~~~E~~~~~y~~-----~~~lr~~~~~~~~~~-~~~~fi~~~~~~~~~~~~~-----~s~~yv~D~v~a 203 (298)
T PLN02778 135 NFTGSFYSKTKAMVEELLKNYEN-----VCTLRVRMPISSDLS-NPRNFITKITRYEKVVNIP-----NSMTILDELLPI 203 (298)
T ss_pred CCCCCchHHHHHHHHHHHHHhhc-----cEEeeecccCCcccc-cHHHHHHHHHcCCCeeEcC-----CCCEEHHHHHHH
Confidence 34568999999999999998753 467888887876532 2345778888887765543 379999999999
Q ss_pred HHHHHHHhccccchhhccCCcEEEeeCCCCccHHHHHHHHHHHcCCCCCC--ccCCHHHHHHHHHHHHHHHHHhCCCCCC
Q 047227 233 HICAERALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPR--IKIPAFVMMPIAHMVELTYRLLGPYGMK 310 (485)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~~t~~el~~~i~~~~g~~~~~--~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 310 (485)
++.+++. ..+++||+++++++|+.|+++.+.+.+|.+... +.++.. . +.. .
T Consensus 204 l~~~l~~----------~~~g~yNigs~~~iS~~el~~~i~~~~~~~~~~~~~~i~~~-----------~-~~~-----~ 256 (298)
T PLN02778 204 SIEMAKR----------NLTGIYNFTNPGVVSHNEILEMYRDYIDPSFTWKNFTLEEQ-----------A-KVI-----V 256 (298)
T ss_pred HHHHHhC----------CCCCeEEeCCCCcccHHHHHHHHHHHhCCCceeccccHHHH-----------H-HHH-----h
Confidence 9988752 123599999999999999999999999864321 211110 0 000 0
Q ss_pred CCCCCHHHHHhhccceeeehhhHHhhcCCCCCCChHHHHHHHHHHHH
Q 047227 311 VPQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSYS 357 (485)
Q Consensus 311 ~p~~~~~~~~~~~~~~~~d~~ka~~~lG~~p~~~l~e~i~~~~~~~~ 357 (485)
.| .....+|++|+++.++-.+. ..++.++...+-.+
T Consensus 257 ~~----------~~~~~Ld~~k~~~~~~~~~~-~~~~~~~~~~~~~~ 292 (298)
T PLN02778 257 AP----------RSNNELDTTKLKREFPELLP-IKESLIKYVFEPNK 292 (298)
T ss_pred CC----------CccccccHHHHHHhcccccc-hHHHHHHHHHHHHH
Confidence 01 01224799999998764332 45677766665553
|
|
| >COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-29 Score=253.23 Aligned_cols=243 Identities=21% Similarity=0.286 Sum_probs=211.6
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcC-
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQG- 83 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~- 83 (485)
.++|+||||||+|-||+.+|+++++.+..++++++++.........+ +.......+..++.||++|.+.+.+++++
T Consensus 248 ~~gK~vLVTGagGSiGsel~~qil~~~p~~i~l~~~~E~~~~~i~~e---l~~~~~~~~~~~~igdVrD~~~~~~~~~~~ 324 (588)
T COG1086 248 LTGKTVLVTGGGGSIGSELCRQILKFNPKEIILFSRDEYKLYLIDME---LREKFPELKLRFYIGDVRDRDRVERAMEGH 324 (588)
T ss_pred cCCCEEEEeCCCCcHHHHHHHHHHhcCCCEEEEecCchHHHHHHHHH---HHhhCCCcceEEEecccccHHHHHHHHhcC
Confidence 35799999999999999999999999877999999987644333333 33333347889999999999999999998
Q ss_pred -CCEEEEcCC---CCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCccccccCCCCcCCCCCCCCCCCCCCchH
Q 047227 84 -AEVVFHMAA---PNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDFY 159 (485)
Q Consensus 84 -~d~Vih~aa---~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy~~~~~~~~~~~e~~~~~~~~~~~Y 159 (485)
+|+|||.|| ++..+.||.+...+|+.||.|+++||.++||++||.+||..+ .+|.|.|
T Consensus 325 kvd~VfHAAA~KHVPl~E~nP~Eai~tNV~GT~nv~~aa~~~~V~~~V~iSTDKA------------------V~PtNvm 386 (588)
T COG1086 325 KVDIVFHAAALKHVPLVEYNPEEAIKTNVLGTENVAEAAIKNGVKKFVLISTDKA------------------VNPTNVM 386 (588)
T ss_pred CCceEEEhhhhccCcchhcCHHHHHHHhhHhHHHHHHHHHHhCCCEEEEEecCcc------------------cCCchHh
Confidence 999999999 667888999999999999999999999999999999999765 3789999
Q ss_pred HHHHHHHHHHHHHHhCCC---CceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCceeecccHHHHHHHHHHH
Q 047227 160 SATKAEGEALVIKANGTN---GLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICA 236 (485)
Q Consensus 160 ~~sK~~~E~~~~~~~~~~---g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~D~a~a~~~~ 236 (485)
|.||..+|+++..++.+. +.++|++|+|||.|.+ ...+|-|.+.+.+|+++++. +++-.|-|+.+.|.++.++.+
T Consensus 387 GaTKr~aE~~~~a~~~~~~~~~T~f~~VRFGNVlGSr-GSViPlFk~QI~~GgplTvT-dp~mtRyfMTI~EAv~LVlqA 464 (588)
T COG1086 387 GATKRLAEKLFQAANRNVSGTGTRFCVVRFGNVLGSR-GSVIPLFKKQIAEGGPLTVT-DPDMTRFFMTIPEAVQLVLQA 464 (588)
T ss_pred hHHHHHHHHHHHHHhhccCCCCcEEEEEEecceecCC-CCCHHHHHHHHHcCCCcccc-CCCceeEEEEHHHHHHHHHHH
Confidence 999999999999997633 3889999999999986 45789999999999999887 788999999999999999988
Q ss_pred HHHhccccchhhccCCcEEEeeCCCCccHHHHHHHHHHHcCCC
Q 047227 237 ERALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQ 279 (485)
Q Consensus 237 ~~~~~~~~~~~~~~~g~~ynv~~~~~~t~~el~~~i~~~~g~~ 279 (485)
... . ..|++|-+.-|+++++.|+++.+.+..|..
T Consensus 465 ~a~-~--------~gGeifvldMGepvkI~dLAk~mi~l~g~~ 498 (588)
T COG1086 465 GAI-A--------KGGEIFVLDMGEPVKIIDLAKAMIELAGQT 498 (588)
T ss_pred Hhh-c--------CCCcEEEEcCCCCeEHHHHHHHHHHHhCCC
Confidence 662 1 457899888889999999999999999843
|
|
| >PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.5e-31 Score=246.55 Aligned_cols=238 Identities=24% Similarity=0.304 Sum_probs=183.8
Q ss_pred EEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeE----EEEecCCCHHHHHHHhc--C
Q 047227 10 CVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAH----YVSFDLRHKAQVLQALQ--G 83 (485)
Q Consensus 10 iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~----~~~~Dl~d~~~l~~~~~--~ 83 (485)
||||||+|.||+.++++|++.+...++++|++.........+ +......++++ .+.+|++|++.+.++++ +
T Consensus 1 VLVTGa~GSIGseL~rql~~~~p~~lil~d~~E~~l~~l~~~---l~~~~~~~~v~~~~~~vigDvrd~~~l~~~~~~~~ 77 (293)
T PF02719_consen 1 VLVTGAGGSIGSELVRQLLRYGPKKLILFDRDENKLYELERE---LRSRFPDPKVRFEIVPVIGDVRDKERLNRIFEEYK 77 (293)
T ss_dssp EEEETTTSHHHHHHHHHHHCCB-SEEEEEES-HHHHHHHHHH---CHHHC--TTCEEEEE--CTSCCHHHHHHHHTT--T
T ss_pred CEEEccccHHHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHH---HhhcccccCcccccCceeecccCHHHHHHHHhhcC
Confidence 799999999999999999999866899999986533222221 11111233454 35889999999999998 7
Q ss_pred CCEEEEcCC---CCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCccccccCCCCcCCCCCCCCCCCCCCchHH
Q 047227 84 AEVVFHMAA---PNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDFYS 160 (485)
Q Consensus 84 ~d~Vih~aa---~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy~~~~~~~~~~~e~~~~~~~~~~~Y~ 160 (485)
+|+|||.|| +...+.+|.+..++|+.||.|++++|.++++++||++||..++ +|.+.||
T Consensus 78 pdiVfHaAA~KhVpl~E~~p~eav~tNv~GT~nv~~aa~~~~v~~~v~ISTDKAv------------------~PtnvmG 139 (293)
T PF02719_consen 78 PDIVFHAAALKHVPLMEDNPFEAVKTNVLGTQNVAEAAIEHGVERFVFISTDKAV------------------NPTNVMG 139 (293)
T ss_dssp -SEEEE------HHHHCCCHHHHHHHHCHHHHHHHHHHHHTT-SEEEEEEECGCS------------------S--SHHH
T ss_pred CCEEEEChhcCCCChHHhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccccC------------------CCCcHHH
Confidence 999999999 3446679999999999999999999999999999999997663 6889999
Q ss_pred HHHHHHHHHHHHHhCCC---CceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCceeecccHHHHHHHHHHHH
Q 047227 161 ATKAEGEALVIKANGTN---GLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICAE 237 (485)
Q Consensus 161 ~sK~~~E~~~~~~~~~~---g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~D~a~a~~~~~ 237 (485)
.||..+|+++..++... +.+++++|+|||.|.. ...+|.|.+++++|+++.+. +++..|-|+.+++.++.++.+.
T Consensus 140 atKrlaE~l~~~~~~~~~~~~t~f~~VRFGNVlgS~-GSVip~F~~Qi~~g~PlTvT-~p~mtRffmti~EAv~Lvl~a~ 217 (293)
T PF02719_consen 140 ATKRLAEKLVQAANQYSGNSDTKFSSVRFGNVLGSR-GSVIPLFKKQIKNGGPLTVT-DPDMTRFFMTIEEAVQLVLQAA 217 (293)
T ss_dssp HHHHHHHHHHHHHCCTSSSS--EEEEEEE-EETTGT-TSCHHHHHHHHHTTSSEEEC-ETT-EEEEE-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhCCCCCcEEEEEEecceecCC-CcHHHHHHHHHHcCCcceeC-CCCcEEEEecHHHHHHHHHHHH
Confidence 99999999999998765 6899999999999975 46899999999999999887 6788999999999999999886
Q ss_pred HHhccccchhhccCCcEEEeeCCCCccHHHHHHHHHHHcCCC
Q 047227 238 RALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQ 279 (485)
Q Consensus 238 ~~~~~~~~~~~~~~g~~ynv~~~~~~t~~el~~~i~~~~g~~ 279 (485)
.. . ..|++|..--++++++.|+++.+.+..|..
T Consensus 218 ~~-~--------~~geifvl~mg~~v~I~dlA~~~i~~~g~~ 250 (293)
T PF02719_consen 218 AL-A--------KGGEIFVLDMGEPVKILDLAEAMIELSGLE 250 (293)
T ss_dssp HH-----------TTEEEEE---TCEECCCHHHHHHHHTT-E
T ss_pred hh-C--------CCCcEEEecCCCCcCHHHHHHHHHhhcccc
Confidence 52 1 457899888889999999999999999854
|
The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A. |
| >TIGR01746 Thioester-redct thioester reductase domain | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.7e-29 Score=249.64 Aligned_cols=271 Identities=24% Similarity=0.252 Sum_probs=192.4
Q ss_pred EEEEEcCCCchHHHHHHHHHhcCC-ceEEEeecCCccccCCccchhhhhhh------hcCCCeEEEEecCCCH------H
Q 047227 9 LCVVTGGRGFAARHLVEMLIRYDM-FSVRIADLSDSIALEPHEEQGILGEA------LRSGRAHYVSFDLRHK------A 75 (485)
Q Consensus 9 ~iLVtGgtG~iG~~l~~~Ll~~G~-~~V~~~~r~~~~~~~~~~~~~~~~~~------~~~~~v~~~~~Dl~d~------~ 75 (485)
+|||||||||+|+++++.|+++|+ .+|+++.|..+.......-...+... ...++++++.+|++++ +
T Consensus 1 ~vlvtGatG~lG~~l~~~L~~~g~~~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~gl~~~ 80 (367)
T TIGR01746 1 TVLLTGATGFLGAYLLEELLRRSTQAKVICLVRAASEEHAMERLREALRSYRLWQEDLARERIEVVAGDLSEPRLGLSDA 80 (367)
T ss_pred CEEEeccchHHHHHHHHHHHhCCCCCEEEEEEccCCHHHHHHHHHHHHHHhCCCCchhhhCCEEEEeCCcCcccCCcCHH
Confidence 489999999999999999999985 37999888654210000000000000 0015799999998753 5
Q ss_pred HHHHHhcCCCEEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCccccccCCCCcCCCCCCC-CCCCC
Q 047227 76 QVLQALQGAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVVFDGVHGIINGNEAL-PYPPK 154 (485)
Q Consensus 76 ~l~~~~~~~d~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy~~~~~~~~~~~e~~-~~~~~ 154 (485)
.+.++.+++|+|||+|+............++|+.++.+++++|.+.++++|+|+||.++|+........+++.. +....
T Consensus 81 ~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~nv~g~~~ll~~a~~~~~~~~v~iSS~~v~~~~~~~~~~~~~~~~~~~~~ 160 (367)
T TIGR01746 81 EWERLAENVDTIVHNGALVNWVYPYSELRAANVLGTREVLRLAASGRAKPLHYVSTISVLAAIDLSTVTEDDAIVTPPPG 160 (367)
T ss_pred HHHHHHhhCCEEEeCCcEeccCCcHHHHhhhhhHHHHHHHHHHhhCCCceEEEEccccccCCcCCCCccccccccccccc
Confidence 67777788999999999555445667788999999999999999999989999999999965332221222211 11223
Q ss_pred CCchHHHHHHHHHHHHHHHhCCCCceEEEEecCCcccCCCCC------ChHHHHHHHHcCCCeEEecCCC-ceeecccHH
Q 047227 155 HNDFYSATKAEGEALVIKANGTNGLLTCCIRPSSIFGPGDRL------LVPSLVAAARAGKSKFIIGDGN-NVYDFTYVA 227 (485)
Q Consensus 155 ~~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~~------~~~~~~~~~~~g~~~~~~g~g~-~~~~~i~v~ 227 (485)
+.+.|+.+|..+|.+++.+.+. |++++++||+.+||+...+ ++..++......+. .++.. ...+|+|++
T Consensus 161 ~~~~Y~~sK~~~E~~~~~~~~~-g~~~~i~Rpg~v~G~~~~g~~~~~~~~~~~~~~~~~~~~---~p~~~~~~~~~~~vd 236 (367)
T TIGR01746 161 LAGGYAQSKWVAELLVREASDR-GLPVTIVRPGRILGNSYTGAINSSDILWRMVKGCLALGA---YPDSPELTEDLTPVD 236 (367)
T ss_pred cCCChHHHHHHHHHHHHHHHhc-CCCEEEECCCceeecCCCCCCCchhHHHHHHHHHHHhCC---CCCCCccccCcccHH
Confidence 4578999999999999987754 9999999999999974322 23334433333322 22333 367899999
Q ss_pred HHHHHHHHHHHHhccccchhhccCCcEEEeeCCCCccHHHHHHHHHHHcCCCCCCccCCHHHH
Q 047227 228 NVAHAHICAERALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVM 290 (485)
Q Consensus 228 D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~~t~~el~~~i~~~~g~~~~~~~~p~~~~ 290 (485)
|+|++++.++...... ..+++||+++++++++.|+++.+.+ .|++.+.+..+.|..
T Consensus 237 dva~ai~~~~~~~~~~------~~~~~~~v~~~~~~s~~e~~~~i~~-~g~~~~~~~~~~w~~ 292 (367)
T TIGR01746 237 YVARAIVALSSQPAAS------AGGPVFHVVNPEPVSLDEFLEWLER-AGYNLKLVSFDEWLQ 292 (367)
T ss_pred HHHHHHHHHHhCCCcc------cCCceEEecCCCCCCHHHHHHHHHH-cCCCCCcCCHHHHHH
Confidence 9999999886531110 1278999999999999999999999 898877655555543
|
It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold. |
| >PLN02503 fatty acyl-CoA reductase 2 | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.3e-27 Score=244.67 Aligned_cols=266 Identities=18% Similarity=0.203 Sum_probs=192.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCC--ceEEEeecCCccccCCccc-hhhhh--------hh-------hcCCCeEEE
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDM--FSVRIADLSDSIALEPHEE-QGILG--------EA-------LRSGRAHYV 67 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~--~~V~~~~r~~~~~~~~~~~-~~~~~--------~~-------~~~~~v~~~ 67 (485)
.+|+|||||||||+|+++++.|++.+. .+|+++.|........+.- ..++. +. ....++..+
T Consensus 118 ~~k~VlVTGaTGFLGk~LlekLLr~~~~v~kIy~LvR~k~~~~a~eRl~~~l~~~~lf~~l~~~~g~~~~~~~~~Ki~~v 197 (605)
T PLN02503 118 RGKNFLITGATGFLAKVLIEKILRTNPDVGKIYLLIKAKDKEAAIERLKNEVIDAELFKCLQETHGKSYQSFMLSKLVPV 197 (605)
T ss_pred cCCEEEEcCCchHHHHHHHHHHHHhCCCCcEEEEEEecCCchhHHHHHHHHHhhhhhHHHHHHhcCccccccccccEEEE
Confidence 578999999999999999999998763 2688888865421110000 00000 00 013578999
Q ss_pred EecCCCH------HHHHHHhcCCCEEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcC-CCEEEEecCccccccCCC
Q 047227 68 SFDLRHK------AQVLQALQGAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELK-VKRLIYTSSPSVVFDGVH 140 (485)
Q Consensus 68 ~~Dl~d~------~~l~~~~~~~d~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~-v~r~V~~SS~~vy~~~~~ 140 (485)
.+|++++ +....+.+++|+|||+|+......+++...++|+.|+.+++++|++.+ +++|||+||+.|||+...
T Consensus 198 ~GDl~d~~LGLs~~~~~~L~~~vDiVIH~AA~v~f~~~~~~a~~vNV~GT~nLLelA~~~~~lk~fV~vSTayVyG~~~G 277 (605)
T PLN02503 198 VGNVCESNLGLEPDLADEIAKEVDVIINSAANTTFDERYDVAIDINTRGPCHLMSFAKKCKKLKLFLQVSTAYVNGQRQG 277 (605)
T ss_pred EeeCCCcccCCCHHHHHHHHhcCCEEEECccccccccCHHHHHHHHHHHHHHHHHHHHHcCCCCeEEEccCceeecCCCC
Confidence 9999986 455666678999999999666666788899999999999999999875 789999999999986431
Q ss_pred C----cCCCCCC-------------------------------C-C------------------CCCCCCchHHHHHHHH
Q 047227 141 G----IINGNEA-------------------------------L-P------------------YPPKHNDFYSATKAEG 166 (485)
Q Consensus 141 ~----~~~~~e~-------------------------------~-~------------------~~~~~~~~Y~~sK~~~ 166 (485)
. .++..+. . + .-....+.|..+|+++
T Consensus 278 ~i~E~~y~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~~~~l~~~g~~~~~~~~~pNtYt~TK~lA 357 (605)
T PLN02503 278 RIMEKPFRMGDCIARELGISNSLPHNRPALDIEAEIKLALDSKRHGFQSNSFAQKMKDLGLERAKLYGWQDTYVFTKAMG 357 (605)
T ss_pred eeeeeecCcccccccccccccccccccccCCHHHHHHHHHHhhhcccchHHHHHHhhhcccchhhhCCCCChHHHHHHHH
Confidence 1 1110000 0 0 0122347899999999
Q ss_pred HHHHHHHhCCCCceEEEEecCCc----------ccCCCCCChHHHHHHHHcCCCeEEecCCCceeecccHHHHHHHHHHH
Q 047227 167 EALVIKANGTNGLLTCCIRPSSI----------FGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICA 236 (485)
Q Consensus 167 E~~~~~~~~~~g~~~~ilRp~~v----------~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~D~a~a~~~~ 236 (485)
|++++++. .+++++|+||+.| |++++....+.++.. ..|.....+++++...|+|+||.++.+++.+
T Consensus 358 E~lV~~~~--~~LPv~IvRPsiV~st~~eP~pGw~d~~~~~~p~~~~~-g~G~lr~~~~~~~~~~DiVPVD~vvna~i~a 434 (605)
T PLN02503 358 EMVINSMR--GDIPVVIIRPSVIESTWKDPFPGWMEGNRMMDPIVLYY-GKGQLTGFLADPNGVLDVVPADMVVNATLAA 434 (605)
T ss_pred HHHHHHhc--CCCCEEEEcCCEecccccCCccccccCccccchhhhhe-eccceeEEEeCCCeeEeEEeecHHHHHHHHH
Confidence 99999765 4799999999999 445443333433332 3565556889999999999999999999988
Q ss_pred HHHhccccchhhccCCcEEEeeCC--CCccHHHHHHHHHHHcCC
Q 047227 237 ERALASEVTVAEKAAGQAYFVTNM--ESIKFWEFVSLILEGLGY 278 (485)
Q Consensus 237 ~~~~~~~~~~~~~~~g~~ynv~~~--~~~t~~el~~~i~~~~g~ 278 (485)
...... .....+++||++++ +|++|+|+.+.+.+....
T Consensus 435 ~a~~~~----~~~~~~~vYn~ts~~~nP~t~~~~~~~~~~~~~~ 474 (605)
T PLN02503 435 MAKHGG----AAKPEINVYQIASSVVNPLVFQDLARLLYEHYKS 474 (605)
T ss_pred HHhhhc----ccCCCCCEEEeCCCCCCCeEHHHHHHHHHHHHhh
Confidence 442111 11135789999988 899999999999886654
|
|
| >COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.1e-26 Score=206.57 Aligned_cols=286 Identities=17% Similarity=0.222 Sum_probs=200.4
Q ss_pred EEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc-CCCEEE
Q 047227 10 CVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ-GAEVVF 88 (485)
Q Consensus 10 iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-~~d~Vi 88 (485)
|+|||||||||++|+..|.+.|| +|++++|++...... ....+. ..+.+.++.. ++|+||
T Consensus 1 IliTGgTGlIG~~L~~~L~~~gh-~v~iltR~~~~~~~~-----------~~~~v~-------~~~~~~~~~~~~~DavI 61 (297)
T COG1090 1 ILITGGTGLIGRALTARLRKGGH-QVTILTRRPPKASQN-----------LHPNVT-------LWEGLADALTLGIDAVI 61 (297)
T ss_pred CeEeccccchhHHHHHHHHhCCC-eEEEEEcCCcchhhh-----------cCcccc-------ccchhhhcccCCCCEEE
Confidence 68999999999999999999995 999999987532110 011111 2234555555 699999
Q ss_pred EcCCCC-----CCCCchhhhHHHHHHHHHHHHHHHHhc--CCCEEEEecCccccccCCCCcCCCCCCCCCCCCCCchHHH
Q 047227 89 HMAAPN-----SSINNHKLHHSVNVEGTKNVIDACAEL--KVKRLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDFYSA 161 (485)
Q Consensus 89 h~aa~~-----~~~~~~~~~~~~nv~~t~~ll~a~~~~--~v~r~V~~SS~~vy~~~~~~~~~~~e~~~~~~~~~~~Y~~ 161 (485)
|+||.. ......+...+..+..|..|.++..+. +++.+|-.|..+.||+...... +|+.| .+.+.-+.
T Consensus 62 NLAG~~I~~rrWt~~~K~~i~~SRi~~T~~L~e~I~~~~~~P~~~isaSAvGyYG~~~~~~~--tE~~~---~g~~Fla~ 136 (297)
T COG1090 62 NLAGEPIAERRWTEKQKEEIRQSRINTTEKLVELIAASETKPKVLISASAVGYYGHSGDRVV--TEESP---PGDDFLAQ 136 (297)
T ss_pred ECCCCccccccCCHHHHHHHHHHHhHHHHHHHHHHHhccCCCcEEEecceEEEecCCCceee--ecCCC---CCCChHHH
Confidence 999922 233456778899999999999998855 4677777777777765433333 44332 34555666
Q ss_pred HHHHHHHHHHHHhCCCCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCceeecccHHHHHHHHHHHHHHhc
Q 047227 162 TKAEGEALVIKANGTNGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICAERALA 241 (485)
Q Consensus 162 sK~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~D~a~a~~~~~~~~~ 241 (485)
.-..-|+....+. ..|.++|.+|.|.|.|+... .+..+....+-|-- -.+|+|.++++|||++|+++++..++++
T Consensus 137 lc~~WE~~a~~a~-~~gtRvvllRtGvVLs~~GG-aL~~m~~~fk~glG-G~~GsGrQ~~SWIhieD~v~~I~fll~~-- 211 (297)
T COG1090 137 LCQDWEEEALQAQ-QLGTRVVLLRTGVVLSPDGG-ALGKMLPLFKLGLG-GKLGSGRQWFSWIHIEDLVNAILFLLEN-- 211 (297)
T ss_pred HHHHHHHHHhhhh-hcCceEEEEEEEEEecCCCc-chhhhcchhhhccC-CccCCCCceeeeeeHHHHHHHHHHHHhC--
Confidence 6667787777654 46899999999999998643 34444433322211 2468999999999999999999999883
Q ss_pred cccchhhccCCcEEEeeCCCCccHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCCCCCCCCHHHHHh
Q 047227 242 SEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELTYRLLGPYGMKVPQLTPSRVRL 321 (485)
Q Consensus 242 ~~~~~~~~~~g~~ynv~~~~~~t~~el~~~i~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 321 (485)
+... +.||++++.|++..||...+.++++++ ..+.+|.+++..+.. +....
T Consensus 212 ------~~ls-Gp~N~taP~PV~~~~F~~al~r~l~RP-~~~~vP~~~~rl~LG--e~a~~------------------- 262 (297)
T COG1090 212 ------EQLS-GPFNLTAPNPVRNKEFAHALGRALHRP-AILPVPSFALRLLLG--EMADL------------------- 262 (297)
T ss_pred ------cCCC-CcccccCCCcCcHHHHHHHHHHHhCCC-ccccCcHHHHHHHhh--hhHHH-------------------
Confidence 3343 489999999999999999999999876 456778776544322 11111
Q ss_pred hccceeeehhhHHhhcCCCCCC-ChHHHHHHHHH
Q 047227 322 LSCSRTFDCSKAKDLLGYMPIV-PLEEGIKRTVD 354 (485)
Q Consensus 322 ~~~~~~~d~~ka~~~lG~~p~~-~l~e~i~~~~~ 354 (485)
+-.....=..|+.+ .||+.++ ++++++.+.+.
T Consensus 263 lL~gQrvlP~kl~~-aGF~F~y~dl~~AL~~il~ 295 (297)
T COG1090 263 LLGGQRVLPKKLEA-AGFQFQYPDLEEALADILK 295 (297)
T ss_pred HhccchhhHHHHHH-CCCeeecCCHHHHHHHHHh
Confidence 11223344566665 6888766 79999988764
|
|
| >KOG1372 consensus GDP-mannose 4,6 dehydratase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-26 Score=205.98 Aligned_cols=320 Identities=19% Similarity=0.189 Sum_probs=238.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhh-cCCCeEEEEecCCCHHHHHHHhc--C
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEAL-RSGRAHYVSFDLRHKAQVLQALQ--G 83 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~--~ 83 (485)
.+..||||-||.-|++|++.|+.+| ++|.++.|..++.....-++-+..... .......+.+|++|...+.+++. +
T Consensus 28 rkvALITGItGQDGSYLaEfLL~Kg-YeVHGiiRRsSsFNT~RIeHlY~nP~~h~~~~mkLHYgDmTDss~L~k~I~~ik 106 (376)
T KOG1372|consen 28 RKVALITGITGQDGSYLAEFLLSKG-YEVHGIIRRSSSFNTARIEHLYSNPHTHNGASMKLHYGDMTDSSCLIKLISTIK 106 (376)
T ss_pred ceEEEEecccCCCchHHHHHHHhCC-ceeeEEEeeccccchhhhhhhhcCchhcccceeEEeeccccchHHHHHHHhccC
Confidence 4568999999999999999999999 799998887765544333332222222 23567889999999999999986 5
Q ss_pred CCEEEEcCCCC---CCCCchhhhHHHHHHHHHHHHHHHHhcCC---CEEEEecCccccccCCCCcCCCCCCCCCCCCCCc
Q 047227 84 AEVVFHMAAPN---SSINNHKLHHSVNVEGTKNVIDACAELKV---KRLIYTSSPSVVFDGVHGIINGNEALPYPPKHND 157 (485)
Q Consensus 84 ~d~Vih~aa~~---~~~~~~~~~~~~nv~~t~~ll~a~~~~~v---~r~V~~SS~~vy~~~~~~~~~~~e~~~~~~~~~~ 157 (485)
++-|+|+|+.. .+.+-++.+-++...||.++++|.+.++. -||...||...|| .....|..|++| ..|.+
T Consensus 107 PtEiYnLaAQSHVkvSFdlpeYTAeVdavGtLRlLdAi~~c~l~~~VrfYQAstSElyG--kv~e~PQsE~TP--FyPRS 182 (376)
T KOG1372|consen 107 PTEVYNLAAQSHVKVSFDLPEYTAEVDAVGTLRLLDAIRACRLTEKVRFYQASTSELYG--KVQEIPQSETTP--FYPRS 182 (376)
T ss_pred chhhhhhhhhcceEEEeecccceeeccchhhhhHHHHHHhcCcccceeEEecccHhhcc--cccCCCcccCCC--CCCCC
Confidence 89999999933 35667888899999999999999998862 3899999999984 556677788775 68999
Q ss_pred hHHHHHHHHHHHHHHHhCCCCceEEEEecCCcccCCCC-CChHH----HHHHH-HcCCCeEEecCCCceeecccHHHHHH
Q 047227 158 FYSATKAEGEALVIKANGTNGLLTCCIRPSSIFGPGDR-LLVPS----LVAAA-RAGKSKFIIGDGNNVYDFTYVANVAH 231 (485)
Q Consensus 158 ~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~-~~~~~----~~~~~-~~g~~~~~~g~g~~~~~~i~v~D~a~ 231 (485)
+|+.+|..+-.++..|.+.+++-.|---..|--+|+.. .++.. -+..+ .......-.|+-+..+||-|+.|.++
T Consensus 183 PYa~aKmy~~WivvNyREAYnmfAcNGILFNHESPRRGenFVTRKItRsvakI~~gqqe~~~LGNL~a~RDWGhA~dYVE 262 (376)
T KOG1372|consen 183 PYAAAKMYGYWIVVNYREAYNMFACNGILFNHESPRRGENFVTRKITRSVAKISLGQQEKIELGNLSALRDWGHAGDYVE 262 (376)
T ss_pred hhHHhhhhheEEEEEhHHhhcceeeccEeecCCCCccccchhhHHHHHHHHHhhhcceeeEEecchhhhcccchhHHHHH
Confidence 99999999999888888888876664334444445433 23222 22233 33334456688899999999999999
Q ss_pred HHHHHHHHhccccchhhccCCcEEEeeCCCCccHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhC---C--
Q 047227 232 AHICAERALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELTYRLLG---P-- 306 (485)
Q Consensus 232 a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~~t~~el~~~i~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~---~-- 306 (485)
|++.++++ .....|.|..++..|++||.+.....+|..... ..+.+. .
T Consensus 263 AMW~mLQ~----------d~PdDfViATge~hsVrEF~~~aF~~ig~~l~W-----------------eg~gv~~~~~n~ 315 (376)
T KOG1372|consen 263 AMWLMLQQ----------DSPDDFVIATGEQHSVREFCNLAFAEIGEVLNW-----------------EGEGVDEVGKND 315 (376)
T ss_pred HHHHHHhc----------CCCCceEEecCCcccHHHHHHHHHHhhCcEEee-----------------cccccccccccC
Confidence 99999885 334579999999999999999988888853221 101000 0
Q ss_pred CC-----CCCCCCCHHHHHhhccceeeehhhHHhhcCCCCCCChHHHHHHHHHHHHHhHhc
Q 047227 307 YG-----MKVPQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSYSHLRAE 362 (485)
Q Consensus 307 ~~-----~~~p~~~~~~~~~~~~~~~~d~~ka~~~lG~~p~~~l~e~i~~~~~~~~~~~~~ 362 (485)
.+ .+...+.|..++.+.+ |++|+++.|||+|+++++|-+++|++.-.++...
T Consensus 316 ~g~v~V~v~~kYyRPtEVd~LqG----dasKAk~~LgW~pkv~f~eLVkeMv~~DieLm~~ 372 (376)
T KOG1372|consen 316 DGVVRVKVDPKYYRPTEVDTLQG----DASKAKKTLGWKPKVTFPELVKEMVASDIELMKR 372 (376)
T ss_pred CceEEEEecccccCcchhhhhcC----ChHHHHHhhCCCCccCHHHHHHHHHHhHHHHHhh
Confidence 00 1233456666666554 9999999999999999999999999887665543
|
|
| >TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.4e-25 Score=218.41 Aligned_cols=271 Identities=16% Similarity=0.160 Sum_probs=188.6
Q ss_pred EEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHh------c
Q 047227 9 LCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQAL------Q 82 (485)
Q Consensus 9 ~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~------~ 82 (485)
+||||||||++|++++++|+++| ++|+++.|++... ...+++.+.+|+.|++.+.+++ +
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g-~~V~~~~R~~~~~--------------~~~~~~~~~~d~~d~~~l~~a~~~~~~~~ 65 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAAS-VPFLVASRSSSSS--------------AGPNEKHVKFDWLDEDTWDNPFSSDDGME 65 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCC-CcEEEEeCCCccc--------------cCCCCccccccCCCHHHHHHHHhcccCcC
Confidence 48999999999999999999999 5999999986521 1236777889999999999999 6
Q ss_pred C-CCEEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCccccccCCCCcCCCCCCCCCCCCCCchHHH
Q 047227 83 G-AEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDFYSA 161 (485)
Q Consensus 83 ~-~d~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy~~~~~~~~~~~e~~~~~~~~~~~Y~~ 161 (485)
+ +|.|+|+++.... ......+++++|++.|++||||+||..++.. . .
T Consensus 66 g~~d~v~~~~~~~~~----------~~~~~~~~i~aa~~~gv~~~V~~Ss~~~~~~----------------~------~ 113 (285)
T TIGR03649 66 PEISAVYLVAPPIPD----------LAPPMIKFIDFARSKGVRRFVLLSASIIEKG----------------G------P 113 (285)
T ss_pred CceeEEEEeCCCCCC----------hhHHHHHHHHHHHHcCCCEEEEeeccccCCC----------------C------c
Confidence 7 9999999873211 1235578999999999999999998655310 0 0
Q ss_pred HHHHHHHHHHHHhCCCCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCceeecccHHHHHHHHHHHHHHhc
Q 047227 162 TKAEGEALVIKANGTNGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICAERALA 241 (485)
Q Consensus 162 sK~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~D~a~a~~~~~~~~~ 241 (485)
.+...|+++++ ..|++++++||+.+|++.... .+...+.++..+ +.+.++...+|+|++|+|+++..++..
T Consensus 114 ~~~~~~~~l~~---~~gi~~tilRp~~f~~~~~~~---~~~~~~~~~~~~-~~~~g~~~~~~v~~~Dva~~~~~~l~~-- 184 (285)
T TIGR03649 114 AMGQVHAHLDS---LGGVEYTVLRPTWFMENFSEE---FHVEAIRKENKI-YSATGDGKIPFVSADDIARVAYRALTD-- 184 (285)
T ss_pred hHHHHHHHHHh---ccCCCEEEEeccHHhhhhccc---ccccccccCCeE-EecCCCCccCcccHHHHHHHHHHHhcC--
Confidence 13345665554 248999999999988653211 112223333333 455678889999999999999988762
Q ss_pred cccchhhccCCcEEEeeCCCCccHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCCCCCCCCHH-HHH
Q 047227 242 SEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELTYRLLGPYGMKVPQLTPS-RVR 320 (485)
Q Consensus 242 ~~~~~~~~~~g~~ynv~~~~~~t~~el~~~i~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~~ 320 (485)
+...++.|++++++.+|+.|+++.+.+.+|++.+...+|..... +.+.. . ..|..... ...
T Consensus 185 ------~~~~~~~~~l~g~~~~s~~eia~~l~~~~g~~v~~~~~~~~~~~------~~l~~----~--g~~~~~~~~~~~ 246 (285)
T TIGR03649 185 ------KVAPNTDYVVLGPELLTYDDVAEILSRVLGRKITHVKLTEEELA------QRLQS----F--GMPEDLARMLAS 246 (285)
T ss_pred ------CCcCCCeEEeeCCccCCHHHHHHHHHHHhCCceEEEeCCHHHHH------HHHHH----c--CCCHHHHHHHHH
Confidence 22457889999999999999999999999999888888775321 11110 0 11111000 000
Q ss_pred h----hccceeeehhhHHhhcCCCCCCChHHHHHHHHH
Q 047227 321 L----LSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVD 354 (485)
Q Consensus 321 ~----~~~~~~~d~~ka~~~lG~~p~~~l~e~i~~~~~ 354 (485)
+ ..+.....++..++.+|.+|+ +++|.+++..+
T Consensus 247 ~~~~~~~g~~~~~~~~~~~~~G~~p~-~~~~~~~~~~~ 283 (285)
T TIGR03649 247 LDTAVKNGAEVRLNDVVKAVTGSKPR-GFRDFAESNKA 283 (285)
T ss_pred HHHHHhCCccccccchHHHHhCcCCc-cHHHHHHHhhh
Confidence 0 011111235556777899886 89999988653
|
This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi. |
| >PLN02260 probable rhamnose biosynthetic enzyme | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.5e-25 Score=236.57 Aligned_cols=270 Identities=16% Similarity=0.120 Sum_probs=184.2
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc--
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ-- 82 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 82 (485)
...|+||||||+||||++|++.|.++| ++|.. ..+|++|.+++.+.++
T Consensus 378 ~~~mkiLVtGa~G~iG~~l~~~L~~~g-~~v~~-----------------------------~~~~l~d~~~v~~~i~~~ 427 (668)
T PLN02260 378 KPSLKFLIYGRTGWIGGLLGKLCEKQG-IAYEY-----------------------------GKGRLEDRSSLLADIRNV 427 (668)
T ss_pred CCCceEEEECCCchHHHHHHHHHHhCC-CeEEe-----------------------------eccccccHHHHHHHHHhh
Confidence 356899999999999999999999999 46531 1246788888888876
Q ss_pred CCCEEEEcCCCCC------CCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCccccccCC----CCcCCCCCCCCCC
Q 047227 83 GAEVVFHMAAPNS------SINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVVFDGV----HGIINGNEALPYP 152 (485)
Q Consensus 83 ~~d~Vih~aa~~~------~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy~~~~----~~~~~~~e~~~~~ 152 (485)
++|+|||+|+... +..++...+++|+.++.+|+++|++.|++ +|++||.+||+.+. ....+.+|+.+ +
T Consensus 428 ~pd~Vih~Aa~~~~~~~~~~~~~~~~~~~~N~~gt~~l~~a~~~~g~~-~v~~Ss~~v~~~~~~~~~~~~~p~~E~~~-~ 505 (668)
T PLN02260 428 KPTHVFNAAGVTGRPNVDWCESHKVETIRANVVGTLTLADVCRENGLL-MMNFATGCIFEYDAKHPEGSGIGFKEEDK-P 505 (668)
T ss_pred CCCEEEECCcccCCCCCChHHhCHHHHHHHHhHHHHHHHHHHHHcCCe-EEEEcccceecCCcccccccCCCCCcCCC-C
Confidence 6999999999331 23578889999999999999999999984 67888888885321 11123344332 2
Q ss_pred CCCCchHHHHHHHHHHHHHHHhCCCCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCceeecccHHHHHHH
Q 047227 153 PKHNDFYSATKAEGEALVIKANGTNGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHA 232 (485)
Q Consensus 153 ~~~~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~D~a~a 232 (485)
..+.+.|+.+|..+|++++.+. +..++|+..+||.+... ...++..+.........+ .+..+++|++.+
T Consensus 506 ~~~~~~Yg~sK~~~E~~~~~~~-----~~~~~r~~~~~~~~~~~-~~nfv~~~~~~~~~~~vp-----~~~~~~~~~~~~ 574 (668)
T PLN02260 506 NFTGSFYSKTKAMVEELLREYD-----NVCTLRVRMPISSDLSN-PRNFITKISRYNKVVNIP-----NSMTVLDELLPI 574 (668)
T ss_pred CCCCChhhHHHHHHHHHHHhhh-----hheEEEEEEecccCCCC-ccHHHHHHhccceeeccC-----CCceehhhHHHH
Confidence 3345899999999999998864 35677777778643211 123344443333322121 246777888888
Q ss_pred HHHHHHHhccccchhhccCCcEEEeeCCCCccHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCCCCC
Q 047227 233 HICAERALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELTYRLLGPYGMKVP 312 (485)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~~t~~el~~~i~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p 312 (485)
++.+++. ..+++||+++++.+|+.|+++.+.+.++.......++.. + ..+
T Consensus 575 ~~~l~~~----------~~~giyni~~~~~~s~~e~a~~i~~~~~~~~~~~~~~~~---------~-~~~---------- 624 (668)
T PLN02260 575 SIEMAKR----------NLRGIWNFTNPGVVSHNEILEMYKDYIDPGFKWSNFTLE---------E-QAK---------- 624 (668)
T ss_pred HHHHHHh----------CCCceEEecCCCcCcHHHHHHHHHHhcCCcccccccCHH---------H-hhh----------
Confidence 7777642 235799999999999999999999987422111111111 0 000
Q ss_pred CCCHHHHHhhccceeeehhhHHhhcCCCCCCChHHHHHHHHH
Q 047227 313 QLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVD 354 (485)
Q Consensus 313 ~~~~~~~~~~~~~~~~d~~ka~~~lG~~p~~~l~e~i~~~~~ 354 (485)
......... .+|++|+++.+|. + .+++|++++++.
T Consensus 625 ----~~~a~rp~~-~l~~~k~~~~~~~-~-~~~~~~l~~~~~ 659 (668)
T PLN02260 625 ----VIVAPRSNN-EMDASKLKKEFPE-L-LSIKESLIKYVF 659 (668)
T ss_pred ----HhhCCCccc-cccHHHHHHhCcc-c-cchHHHHHHHHh
Confidence 000001112 6899999998888 5 389999998864
|
|
| >PRK12320 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.6e-24 Score=228.42 Aligned_cols=198 Identities=19% Similarity=0.191 Sum_probs=151.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCCCEE
Q 047227 8 RLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGAEVV 87 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~d~V 87 (485)
|+||||||+||||+++++.|+++| ++|++++|.... ...++++++.+|++|+. +.+++.++|+|
T Consensus 1 MkILVTGAaGFIGs~La~~Ll~~G-~~Vi~ldr~~~~--------------~~~~~ve~v~~Dl~d~~-l~~al~~~D~V 64 (699)
T PRK12320 1 MQILVTDATGAVGRSVTRQLIAAG-HTVSGIAQHPHD--------------ALDPRVDYVCASLRNPV-LQELAGEADAV 64 (699)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCC-CEEEEEeCChhh--------------cccCCceEEEccCCCHH-HHHHhcCCCEE
Confidence 589999999999999999999999 599999875431 01246889999999985 78888999999
Q ss_pred EEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCccccccCCCCcCCCCCCCCCCCCCCchHHHHHHHHH
Q 047227 88 FHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDFYSATKAEGE 167 (485)
Q Consensus 88 ih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy~~~~~~~~~~~e~~~~~~~~~~~Y~~sK~~~E 167 (485)
||+|+.... . ...+|+.++.|++++|++.|+ |+||+||. ||+. + .|. .+|
T Consensus 65 IHLAa~~~~--~---~~~vNv~Gt~nLleAA~~~Gv-RiV~~SS~--~G~~--------~----------~~~----~aE 114 (699)
T PRK12320 65 IHLAPVDTS--A---PGGVGITGLAHVANAAARAGA-RLLFVSQA--AGRP--------E----------LYR----QAE 114 (699)
T ss_pred EEcCccCcc--c---hhhHHHHHHHHHHHHHHHcCC-eEEEEECC--CCCC--------c----------ccc----HHH
Confidence 999985321 1 235899999999999999998 79999985 3210 0 121 477
Q ss_pred HHHHHHhCCCCceEEEEecCCcccCCCCC----ChHHHHHHHHcCCCeEEecCCCceeecccHHHHHHHHHHHHHHhccc
Q 047227 168 ALVIKANGTNGLLTCCIRPSSIFGPGDRL----LVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICAERALASE 243 (485)
Q Consensus 168 ~~~~~~~~~~g~~~~ilRp~~v~Gp~~~~----~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~D~a~a~~~~~~~~~~~ 243 (485)
.++.. ++++++++|++++|||+... ++..++.....+++ ..++|++|++++++.+++.
T Consensus 115 ~ll~~----~~~p~~ILR~~nVYGp~~~~~~~r~I~~~l~~~~~~~p----------I~vIyVdDvv~alv~al~~---- 176 (699)
T PRK12320 115 TLVST----GWAPSLVIRIAPPVGRQLDWMVCRTVATLLRSKVSARP----------IRVLHLDDLVRFLVLALNT---- 176 (699)
T ss_pred HHHHh----cCCCEEEEeCceecCCCCcccHhHHHHHHHHHHHcCCc----------eEEEEHHHHHHHHHHHHhC----
Confidence 77654 46889999999999997553 23444443333333 3359999999999988762
Q ss_pred cchhhccCCcEEEeeCCCCccHHHHHHHHHHH
Q 047227 244 VTVAEKAAGQAYFVTNMESIKFWEFVSLILEG 275 (485)
Q Consensus 244 ~~~~~~~~g~~ynv~~~~~~t~~el~~~i~~~ 275 (485)
..+++||+++++.+|+.|+++.+...
T Consensus 177 ------~~~GiyNIG~~~~~Si~el~~~i~~~ 202 (699)
T PRK12320 177 ------DRNGVVDLATPDTTNVVTAWRLLRSV 202 (699)
T ss_pred ------CCCCEEEEeCCCeeEHHHHHHHHHHh
Confidence 22349999999999999998888665
|
|
| >PF07993 NAD_binding_4: Male sterility protein; InterPro: IPR013120 This family represents the C-terminal NAD-binding region of the male sterility protein from Arabidopsis and Drosophila | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.6e-26 Score=218.71 Aligned_cols=222 Identities=25% Similarity=0.252 Sum_probs=135.9
Q ss_pred EEcCCCchHHHHHHHHHhcCC-ceEEEeecCCccccCCcc------chhhhhhh--hcCCCeEEEEecCCCH------HH
Q 047227 12 VTGGRGFAARHLVEMLIRYDM-FSVRIADLSDSIALEPHE------EQGILGEA--LRSGRAHYVSFDLRHK------AQ 76 (485)
Q Consensus 12 VtGgtG~iG~~l~~~Ll~~G~-~~V~~~~r~~~~~~~~~~------~~~~~~~~--~~~~~v~~~~~Dl~d~------~~ 76 (485)
|||||||+|+++++.|++++. .+|+++.|..+.....+. +....... ....+++++.||++++ ++
T Consensus 1 lTGaTGflG~~ll~~Ll~~~~~~~I~cLvR~~~~~~~~~rl~~~l~~~~~~~~~~~~~~~ri~~v~GDl~~~~lGL~~~~ 80 (249)
T PF07993_consen 1 LTGATGFLGSHLLEELLRQPPDVKIYCLVRASSSQSALERLKDALKEYGLWDDLDKEALSRIEVVEGDLSQPNLGLSDED 80 (249)
T ss_dssp EE-TTSHHHHHHHHHHHHHS-TTEEEEEE-SSSHHHHHHHHHGGG-SS-HHHHH-HHHTTTEEEEE--TTSGGGG--HHH
T ss_pred CcCCCcHHHHHHHHHHHcCCCCcEEEEEEeCcccccchhhhhhhcccccchhhhhhhhhccEEEEeccccccccCCChHH
Confidence 799999999999999999984 289999987642111000 00001111 1367999999999874 56
Q ss_pred HHHHhcCCCEEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCccccccCCCCcC-----CCCCCCCC
Q 047227 77 VLQALQGAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVVFDGVHGII-----NGNEALPY 151 (485)
Q Consensus 77 l~~~~~~~d~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy~~~~~~~~-----~~~e~~~~ 151 (485)
+.++.+.+|+|||+||..+...++....++|+.||+++++.|.+.+.++|+|+||+.+.+....... ..++....
T Consensus 81 ~~~L~~~v~~IiH~Aa~v~~~~~~~~~~~~NV~gt~~ll~la~~~~~~~~~~iSTa~v~~~~~~~~~~~~~~~~~~~~~~ 160 (249)
T PF07993_consen 81 YQELAEEVDVIIHCAASVNFNAPYSELRAVNVDGTRNLLRLAAQGKRKRFHYISTAYVAGSRPGTIEEKVYPEEEDDLDP 160 (249)
T ss_dssp HHHHHHH--EEEE--SS-SBS-S--EEHHHHHHHHHHHHHHHTSSS---EEEEEEGGGTTS-TTT--SSS-HHH--EEE-
T ss_pred hhccccccceeeecchhhhhcccchhhhhhHHHHHHHHHHHHHhccCcceEEeccccccCCCCCcccccccccccccchh
Confidence 7777788999999999777777888899999999999999999887779999999444433221110 01111122
Q ss_pred CCCCCchHHHHHHHHHHHHHHHhCCCCceEEEEecCCcccCCCC------C-ChHHHHHHHHcCCCeEEecCCCceeecc
Q 047227 152 PPKHNDFYSATKAEGEALVIKANGTNGLLTCCIRPSSIFGPGDR------L-LVPSLVAAARAGKSKFIIGDGNNVYDFT 224 (485)
Q Consensus 152 ~~~~~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~------~-~~~~~~~~~~~g~~~~~~g~g~~~~~~i 224 (485)
+....++|..||..+|++++++.++.|++++|+|||.|+|...+ . ....+...+..|......++++...|++
T Consensus 161 ~~~~~~gY~~SK~~aE~~l~~a~~~~g~p~~I~Rp~~i~g~~~~G~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~v 240 (249)
T PF07993_consen 161 PQGFPNGYEQSKWVAERLLREAAQRHGLPVTIYRPGIIVGDSRTGWWNSDDFFPYLLRSCIALGAFPDLPGDPDARLDLV 240 (249)
T ss_dssp -TTSEE-HHHHHHHHHHHHHHHHHHH---EEEEEE-EEE-SSSSS---TTBHHHHHHHHHHHH-EEES-SB---TT--EE
T ss_pred hccCCccHHHHHHHHHHHHHHHHhcCCceEEEEecCcccccCCCceeeccchHHHHHHHHHHcCCcccccCCCCceEeEE
Confidence 45667799999999999999998777999999999999994322 2 2333445556665445667777789999
Q ss_pred cHHHHHHHH
Q 047227 225 YVANVAHAH 233 (485)
Q Consensus 225 ~v~D~a~a~ 233 (485)
+|+.+|+++
T Consensus 241 PVD~va~aI 249 (249)
T PF07993_consen 241 PVDYVARAI 249 (249)
T ss_dssp EHHHHHHHH
T ss_pred CHHHHHhhC
Confidence 999999986
|
A sequence-related jojoba acyl CoA reductase is also included.; PDB: 4DQV_A. |
| >KOG2865 consensus NADH:ubiquinone oxidoreductase, NDUFA9/39kDa subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.4e-24 Score=197.53 Aligned_cols=311 Identities=21% Similarity=0.241 Sum_probs=231.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCCC
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGAE 85 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~d 85 (485)
.+..+-|.|+|||+|++++.+|.+.| ..|.+--|........ ++-...-.++-+..-|++|+++++++++..+
T Consensus 60 sGiVaTVFGAtGFlGryvvnklak~G-SQviiPyR~d~~~~r~------lkvmGdLGQvl~~~fd~~DedSIr~vvk~sN 132 (391)
T KOG2865|consen 60 SGIVATVFGATGFLGRYVVNKLAKMG-SQVIIPYRGDEYDPRH------LKVMGDLGQVLFMKFDLRDEDSIRAVVKHSN 132 (391)
T ss_pred cceEEEEecccccccHHHHHHHhhcC-CeEEEeccCCccchhh------eeecccccceeeeccCCCCHHHHHHHHHhCc
Confidence 45567899999999999999999999 6999888876532221 2222334678899999999999999999999
Q ss_pred EEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCccccccCCCCcCCCCCCCCCCCCCCchHHHHHHH
Q 047227 86 VVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDFYSATKAE 165 (485)
Q Consensus 86 ~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy~~~~~~~~~~~e~~~~~~~~~~~Y~~sK~~ 165 (485)
+|||+.|......+. .+.++|+.+...++..|++.|+.|||++|+..+- .+..+-|=.+|..
T Consensus 133 VVINLIGrd~eTknf-~f~Dvn~~~aerlAricke~GVerfIhvS~Lgan-----------------v~s~Sr~LrsK~~ 194 (391)
T KOG2865|consen 133 VVINLIGRDYETKNF-SFEDVNVHIAERLARICKEAGVERFIHVSCLGAN-----------------VKSPSRMLRSKAA 194 (391)
T ss_pred EEEEeeccccccCCc-ccccccchHHHHHHHHHHhhChhheeehhhcccc-----------------ccChHHHHHhhhh
Confidence 999999965555554 3579999999999999999999999999986531 3556778999999
Q ss_pred HHHHHHHHhCCCCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCC-ceeecccHHHHHHHHHHHHHHhcccc
Q 047227 166 GEALVIKANGTNGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGN-NVYDFTYVANVAHAHICAERALASEV 244 (485)
Q Consensus 166 ~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~-~~~~~i~v~D~a~a~~~~~~~~~~~~ 244 (485)
+|..+++.-. ..+|+||+.|||..|+ +++.+....++-+.+++++.|+ ..-+.+||-|+|.+++.+++
T Consensus 195 gE~aVrdafP----eAtIirPa~iyG~eDr-fln~ya~~~rk~~~~pL~~~GekT~K~PVyV~DVaa~IvnAvk------ 263 (391)
T KOG2865|consen 195 GEEAVRDAFP----EATIIRPADIYGTEDR-FLNYYASFWRKFGFLPLIGKGEKTVKQPVYVVDVAAAIVNAVK------ 263 (391)
T ss_pred hHHHHHhhCC----cceeechhhhcccchh-HHHHHHHHHHhcCceeeecCCcceeeccEEEehHHHHHHHhcc------
Confidence 9999998543 3799999999998755 5666666667778888888885 46689999999999999987
Q ss_pred chhhccCCcEEEeeCCCCccHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCCCCCCCCHHHHHhhc-
Q 047227 245 TVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELTYRLLGPYGMKVPQLTPSRVRLLS- 323 (485)
Q Consensus 245 ~~~~~~~g~~ynv~~~~~~t~~el~~~i~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~- 323 (485)
.++..|++|...++......|+++.+.+...........|....+.++...+++ ..+.....++.+.....+.
T Consensus 264 --Dp~s~Gktye~vGP~~yql~eLvd~my~~~~~~~ry~r~~mP~f~a~a~~~~f~----~~pf~~~~pln~d~ie~~~v 337 (391)
T KOG2865|consen 264 --DPDSMGKTYEFVGPDRYQLSELVDIMYDMAREWPRYVRLPMPIFKAMAAARDFM----IVPFPPPSPLNRDQIERLTV 337 (391)
T ss_pred --CccccCceeeecCCchhhHHHHHHHHHHHHhhccccccCCcHHHHHHHhhhhee----ecCCCCCCCCCHHHhhheee
Confidence 456789999999999999999999998888764444444443333332222222 1111112135555555443
Q ss_pred cceeeehhhHHhhcCCCCCCChHHHHHHHHHHHHHh
Q 047227 324 CSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSYSHL 359 (485)
Q Consensus 324 ~~~~~d~~ka~~~lG~~p~~~l~e~i~~~~~~~~~~ 359 (485)
.+...+.....++||..+ +++|...-+.+..|+..
T Consensus 338 ~~~vlt~~~tleDLgv~~-t~le~~~~e~l~~yR~~ 372 (391)
T KOG2865|consen 338 TDLVLTGAPTLEDLGVVL-TKLELYPVEFLRQYRKG 372 (391)
T ss_pred hhhhcCCCCcHhhcCcee-eecccccHHHHHHHhhc
Confidence 233445555566789886 48887777766666554
|
|
| >TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.2e-23 Score=244.05 Aligned_cols=267 Identities=21% Similarity=0.222 Sum_probs=189.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcC---CceEEEeecCCccccCCccchhhhhhh---------hcCCCeEEEEecCCC-
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYD---MFSVRIADLSDSIALEPHEEQGILGEA---------LRSGRAHYVSFDLRH- 73 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G---~~~V~~~~r~~~~~~~~~~~~~~~~~~---------~~~~~v~~~~~Dl~d- 73 (485)
.++|||||+|||+|+++++.|++++ ..+|+++.|......... .+... ....+++++.+|+.+
T Consensus 971 ~~~VlvTGatGflG~~l~~~Ll~~~~~~~~~V~~l~R~~~~~~~~~----~l~~~~~~~~~~~~~~~~~i~~~~gDl~~~ 1046 (1389)
T TIGR03443 971 PITVFLTGATGFLGSFILRDLLTRRSNSNFKVFAHVRAKSEEAGLE----RLRKTGTTYGIWDEEWASRIEVVLGDLSKE 1046 (1389)
T ss_pred CceEEEeCCccccHHHHHHHHHhcCCCCCcEEEEEECcCChHHHHH----HHHHHHHHhCCCchhhhcceEEEeccCCCc
Confidence 5799999999999999999999886 357888877643211000 01100 012478999999974
Q ss_pred -----HHHHHHHhcCCCEEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCccccccCCC--------
Q 047227 74 -----KAQVLQALQGAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVVFDGVH-------- 140 (485)
Q Consensus 74 -----~~~l~~~~~~~d~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy~~~~~-------- 140 (485)
.+.+.++.+++|+|||+|+..+.......+...|+.|+.+++++|++.++++|+|+||.++|+....
T Consensus 1047 ~lgl~~~~~~~l~~~~d~iiH~Aa~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~v~vSS~~v~~~~~~~~~~~~~~ 1126 (1389)
T TIGR03443 1047 KFGLSDEKWSDLTNEVDVIIHNGALVHWVYPYSKLRDANVIGTINVLNLCAEGKAKQFSFVSSTSALDTEYYVNLSDELV 1126 (1389)
T ss_pred cCCcCHHHHHHHHhcCCEEEECCcEecCccCHHHHHHhHHHHHHHHHHHHHhCCCceEEEEeCeeecCcccccchhhhhh
Confidence 4567777788999999999655545556666789999999999999999999999999999963211
Q ss_pred ----CcCCCCCC-CCCCCCCCchHHHHHHHHHHHHHHHhCCCCceEEEEecCCcccCCCCC------ChHHHHHHHHcCC
Q 047227 141 ----GIINGNEA-LPYPPKHNDFYSATKAEGEALVIKANGTNGLLTCCIRPSSIFGPGDRL------LVPSLVAAARAGK 209 (485)
Q Consensus 141 ----~~~~~~e~-~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~~------~~~~~~~~~~~g~ 209 (485)
...++++. .+.+..+.+.|+.||..+|.++..+.+ .|++++++||++|||++..+ ++..++.....-+
T Consensus 1127 ~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~aE~l~~~~~~-~g~~~~i~Rpg~v~G~~~~g~~~~~~~~~~~~~~~~~~~ 1205 (1389)
T TIGR03443 1127 QAGGAGIPESDDLMGSSKGLGTGYGQSKWVAEYIIREAGK-RGLRGCIVRPGYVTGDSKTGATNTDDFLLRMLKGCIQLG 1205 (1389)
T ss_pred hccCCCCCcccccccccccCCCChHHHHHHHHHHHHHHHh-CCCCEEEECCCccccCCCcCCCCchhHHHHHHHHHHHhC
Confidence 11122211 111234567899999999999998876 49999999999999986542 2333333222222
Q ss_pred CeEEecCCCceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCCCccHHHHHHHHHHHcCCCCCCccCCHH
Q 047227 210 SKFIIGDGNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAF 288 (485)
Q Consensus 210 ~~~~~g~g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~~t~~el~~~i~~~~g~~~~~~~~p~~ 288 (485)
..+++...++|++|+|+|++++.++..... ...+.+||++++..+++.++++.+.+ .|++.+.+..+.|
T Consensus 1206 ---~~p~~~~~~~~~~Vddva~ai~~~~~~~~~------~~~~~i~~~~~~~~~~~~~~~~~l~~-~g~~~~~~~~~~w 1274 (1389)
T TIGR03443 1206 ---LIPNINNTVNMVPVDHVARVVVAAALNPPK------ESELAVAHVTGHPRIRFNDFLGTLKT-YGYDVEIVDYVHW 1274 (1389)
T ss_pred ---CcCCCCCccccccHHHHHHHHHHHHhCCcc------cCCCCEEEeCCCCCCcHHHHHHHHHH-hCCCCCccCHHHH
Confidence 233555678999999999999988763111 12356899999989999999999976 4776665544444
|
Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal. |
| >COG3320 Putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.8e-24 Score=203.13 Aligned_cols=263 Identities=22% Similarity=0.177 Sum_probs=181.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhh-----hhhcCCCeEEEEecCC------CHHH
Q 047227 8 RLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILG-----EALRSGRAHYVSFDLR------HKAQ 76 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~-----~~~~~~~v~~~~~Dl~------d~~~ 76 (485)
+++|+||||||+|+++++.|+.+-+.+|+++.|..+.......-...+. +.....+++.+.+|+. +...
T Consensus 1 ~~vlLTGATGFLG~yLl~eLL~~~~~kv~cLVRA~s~E~a~~RL~~~~~~~~~~~e~~~~ri~vv~gDl~e~~lGL~~~~ 80 (382)
T COG3320 1 RNVLLTGATGFLGAYLLLELLDRSDAKVICLVRAQSDEAALARLEKTFDLYRHWDELSADRVEVVAGDLAEPDLGLSERT 80 (382)
T ss_pred CeEEEecCchHhHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHHHhhhhhhhhhhhcceEEEEecccccccCCCCHHH
Confidence 4799999999999999999999865689999988662211111001111 1123578999999998 4457
Q ss_pred HHHHhcCCCEEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCccccccCCCCcCC--CCCCCC---C
Q 047227 77 VLQALQGAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVVFDGVHGIIN--GNEALP---Y 151 (485)
Q Consensus 77 l~~~~~~~d~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy~~~~~~~~~--~~e~~~---~ 151 (485)
+.++.+.+|.|||+||..+....+......||.||..+++.|...++|.+.|+||.+|+......... .++..| .
T Consensus 81 ~~~La~~vD~I~H~gA~Vn~v~pYs~L~~~NVlGT~evlrLa~~gk~Kp~~yVSsisv~~~~~~~~~~~~~~~~~~~~~~ 160 (382)
T COG3320 81 WQELAENVDLIIHNAALVNHVFPYSELRGANVLGTAEVLRLAATGKPKPLHYVSSISVGETEYYSNFTVDFDEISPTRNV 160 (382)
T ss_pred HHHHhhhcceEEecchhhcccCcHHHhcCcchHhHHHHHHHHhcCCCceeEEEeeeeeccccccCCCccccccccccccc
Confidence 78888889999999997777788889999999999999999999889999999999997533222211 121111 2
Q ss_pred CCCCCchHHHHHHHHHHHHHHHhCCCCceEEEEecCCcccCCCC------CChHHHHHHHHcCCCeEEecCCCceeeccc
Q 047227 152 PPKHNDFYSATKAEGEALVIKANGTNGLLTCCIRPSSIFGPGDR------LLVPSLVAAARAGKSKFIIGDGNNVYDFTY 225 (485)
Q Consensus 152 ~~~~~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~------~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~ 225 (485)
...+.++|++||..+|.+++++... |++++|+|||+|.|+... .++..++....+-+..+ +.....+.+.
T Consensus 161 ~~~~~~GY~~SKwvaE~Lvr~A~~r-GLpv~I~Rpg~I~gds~tG~~n~~D~~~Rlv~~~~~lg~~P---~~~~~~~~~p 236 (382)
T COG3320 161 GQGLAGGYGRSKWVAEKLVREAGDR-GLPVTIFRPGYITGDSRTGALNTRDFLTRLVLGLLQLGIAP---DSEYSLDMLP 236 (382)
T ss_pred cCccCCCcchhHHHHHHHHHHHhhc-CCCeEEEecCeeeccCccCccccchHHHHHHHHHHHhCCCC---CcccchhhCc
Confidence 3456789999999999999999876 999999999999998653 34445554444333222 3345566666
Q ss_pred HHHHHHHHHHHHHHhccc-cch--hhccCCcEEE-eeCCCCccHHHHHHHHHH
Q 047227 226 VANVAHAHICAERALASE-VTV--AEKAAGQAYF-VTNMESIKFWEFVSLILE 274 (485)
Q Consensus 226 v~D~a~a~~~~~~~~~~~-~~~--~~~~~g~~yn-v~~~~~~t~~el~~~i~~ 274 (485)
++++++++......+.+. ... .+...-..|+ ..-+..++..++.+...+
T Consensus 237 ~~~v~~~v~~~~~~~~~~~~~l~~~~~~~f~~~~~~~~~~~i~l~~~~~w~~~ 289 (382)
T COG3320 237 VDHVARAVVAPSVQVAEAIAALGAHSDIRFNQLHMLTHPDEIGLDEYVDWLIS 289 (382)
T ss_pred cceeeEEeehhhhhHHHHHHHhccCccchhhheecccCCCccchhHHHHhHhh
Confidence 666666555444433211 000 0111112333 222678888888888777
|
|
| >PLN00141 Tic62-NAD(P)-related group II protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.2e-22 Score=189.54 Aligned_cols=230 Identities=17% Similarity=0.172 Sum_probs=160.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCC-HHHHHHHh-cC
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRH-KAQVLQAL-QG 83 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d-~~~l~~~~-~~ 83 (485)
++|+||||||+|++|+++++.|+++| ++|+++.|....... ......+++++.+|++| .+++.+.+ .+
T Consensus 16 ~~~~ilItGasG~iG~~l~~~L~~~g-~~V~~~~R~~~~~~~---------~~~~~~~~~~~~~Dl~d~~~~l~~~~~~~ 85 (251)
T PLN00141 16 KTKTVFVAGATGRTGKRIVEQLLAKG-FAVKAGVRDVDKAKT---------SLPQDPSLQIVRADVTEGSDKLVEAIGDD 85 (251)
T ss_pred cCCeEEEECCCcHHHHHHHHHHHhCC-CEEEEEecCHHHHHH---------hcccCCceEEEEeeCCCCHHHHHHHhhcC
Confidence 46899999999999999999999999 589988876542110 00112468999999998 46787888 68
Q ss_pred CCEEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCccccccCCCCcCCCCCCCCCCCCCCchHHHHH
Q 047227 84 AEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDFYSATK 163 (485)
Q Consensus 84 ~d~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy~~~~~~~~~~~e~~~~~~~~~~~Y~~sK 163 (485)
+|+|||+++..... ++...+++|..++.++++++++.+++|+||+||.++|+...... .++... ..++...|..+|
T Consensus 86 ~d~vi~~~g~~~~~-~~~~~~~~n~~~~~~ll~a~~~~~~~~iV~iSS~~v~g~~~~~~--~~~~~~-~~~~~~~~~~~k 161 (251)
T PLN00141 86 SDAVICATGFRRSF-DPFAPWKVDNFGTVNLVEACRKAGVTRFILVSSILVNGAAMGQI--LNPAYI-FLNLFGLTLVAK 161 (251)
T ss_pred CCEEEECCCCCcCC-CCCCceeeehHHHHHHHHHHHHcCCCEEEEEccccccCCCcccc--cCcchh-HHHHHHHHHHHH
Confidence 99999998843221 23344678999999999999999999999999999986322111 111000 011223345578
Q ss_pred HHHHHHHHHHhCCCCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCceeecccHHHHHHHHHHHHHHhccc
Q 047227 164 AEGEALVIKANGTNGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICAERALASE 243 (485)
Q Consensus 164 ~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~D~a~a~~~~~~~~~~~ 243 (485)
..+|++++. .+++++++||+.++++... +. +.+.........+++.+|+|+++..++..
T Consensus 162 ~~~e~~l~~----~gi~~~iirpg~~~~~~~~------------~~-~~~~~~~~~~~~~i~~~dvA~~~~~~~~~---- 220 (251)
T PLN00141 162 LQAEKYIRK----SGINYTIVRPGGLTNDPPT------------GN-IVMEPEDTLYEGSISRDQVAEVAVEALLC---- 220 (251)
T ss_pred HHHHHHHHh----cCCcEEEEECCCccCCCCC------------ce-EEECCCCccccCcccHHHHHHHHHHHhcC----
Confidence 888888765 5899999999999976421 11 11111111223589999999999999763
Q ss_pred cchhhccCCcEEEeeCC---CCccHHHHHHHHHH
Q 047227 244 VTVAEKAAGQAYFVTNM---ESIKFWEFVSLILE 274 (485)
Q Consensus 244 ~~~~~~~~g~~ynv~~~---~~~t~~el~~~i~~ 274 (485)
+...+.++.+.+. ...++.++...+.+
T Consensus 221 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (251)
T PLN00141 221 ----PESSYKVVEIVARADAPKRSYKDLFASIKQ 250 (251)
T ss_pred ----hhhcCcEEEEecCCCCCchhHHHHHHHhhc
Confidence 2344677877763 24688888877654
|
|
| >KOG2774 consensus NAD dependent epimerase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.2e-22 Score=177.29 Aligned_cols=303 Identities=17% Similarity=0.113 Sum_probs=222.2
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhc-CCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc-
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRY-DMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ- 82 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~-G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~- 82 (485)
.+..+||||||-|.+|..++..|..+ |...|++-|..+++..-. ..-.++..|+.|...+++++-
T Consensus 42 ~~~PrvLITG~LGQLG~~~A~LLR~~yGs~~VILSDI~KPp~~V~-------------~~GPyIy~DILD~K~L~eIVVn 108 (366)
T KOG2774|consen 42 QKAPRVLITGSLGQLGRGLASLLRYMYGSECVILSDIVKPPANVT-------------DVGPYIYLDILDQKSLEEIVVN 108 (366)
T ss_pred CCCCeEEEecchHHHhHHHHHHHHHHhCCccEehhhccCCchhhc-------------ccCCchhhhhhccccHHHhhcc
Confidence 34579999999999999999988765 755777766544322111 123578899999999999874
Q ss_pred -CCCEEEEcCC--CCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCccccccCCCCcCCCCCCCCCCCCCCchH
Q 047227 83 -GAEVVFHMAA--PNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDFY 159 (485)
Q Consensus 83 -~~d~Vih~aa--~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy~~~~~~~~~~~e~~~~~~~~~~~Y 159 (485)
..|..||+.+ +...+.+.....++|+.|..|+++.|++++. ++..-||.+++|+........+-+ -..|.+.|
T Consensus 109 ~RIdWL~HfSALLSAvGE~NVpLA~~VNI~GvHNil~vAa~~kL-~iFVPSTIGAFGPtSPRNPTPdlt---IQRPRTIY 184 (366)
T KOG2774|consen 109 KRIDWLVHFSALLSAVGETNVPLALQVNIRGVHNILQVAAKHKL-KVFVPSTIGAFGPTSPRNPTPDLT---IQRPRTIY 184 (366)
T ss_pred cccceeeeHHHHHHHhcccCCceeeeecchhhhHHHHHHHHcCe-eEeecccccccCCCCCCCCCCCee---eecCceee
Confidence 4999999999 3445556677789999999999999999998 566689999987432221111111 35799999
Q ss_pred HHHHHHHHHHHHHHhCCCCceEEEEecCCcccC---CC--CC-ChHHHHHHHHcCCCeEEecCCCceeecccHHHHHHHH
Q 047227 160 SATKAEGEALVIKANGTNGLLTCCIRPSSIFGP---GD--RL-LVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAH 233 (485)
Q Consensus 160 ~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp---~~--~~-~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~D~a~a~ 233 (485)
|.||..+|.+-+.+..++|+++-++|.+.++.. |. .. .+..|..+.++|+... +-.++...+..|.+|+-+++
T Consensus 185 GVSKVHAEL~GEy~~hrFg~dfr~~rfPg~is~~~pgggttdya~A~f~~Al~~gk~tC-ylrpdtrlpmmy~~dc~~~~ 263 (366)
T KOG2774|consen 185 GVSKVHAELLGEYFNHRFGVDFRSMRFPGIISATKPGGGTTDYAIAIFYDALQKGKHTC-YLRPDTRLPMMYDTDCMASV 263 (366)
T ss_pred chhHHHHHHHHHHHHhhcCccceecccCcccccCCCCCCcchhHHHHHHHHHHcCCccc-ccCCCccCceeehHHHHHHH
Confidence 999999999999999999999999999998874 21 22 3445566667776544 44678889999999999999
Q ss_pred HHHHHHhccccchhhccCCcEEEeeCCCCccHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCCCCCC
Q 047227 234 ICAERALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELTYRLLGPYGMKVPQ 313 (485)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~g~~ynv~~~~~~t~~el~~~i~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~ 313 (485)
+.++.+..+. ...++||+++ ...|..|+++.+.+.+.. +.+... ..
T Consensus 264 ~~~~~a~~~~------lkrr~ynvt~-~sftpee~~~~~~~~~p~----~~i~y~----------------------~~- 309 (366)
T KOG2774|consen 264 IQLLAADSQS------LKRRTYNVTG-FSFTPEEIADAIRRVMPG----FEIDYD----------------------IC- 309 (366)
T ss_pred HHHHhCCHHH------hhhheeeece-eccCHHHHHHHHHhhCCC----ceeecc----------------------cc-
Confidence 9988754433 6678999987 678899999888877642 222110 00
Q ss_pred CCHHHHHhhccceeeehhhHHhhcCCCCCCChHHHHHHHHHHHHHhHh
Q 047227 314 LTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSYSHLRA 361 (485)
Q Consensus 314 ~~~~~~~~~~~~~~~d~~ka~~~lG~~p~~~l~e~i~~~~~~~~~~~~ 361 (485)
....-..++...+|.+.+++++.|+-...+-.-+.-++.-.+....
T Consensus 310 --srq~iad~wp~~~dds~ar~~wh~~h~~~l~~~i~~~i~~~~~n~~ 355 (366)
T KOG2774|consen 310 --TRQSIADSWPMSLDDSEARTEWHEKHSLHLLSIISTVVAVHKSNLK 355 (366)
T ss_pred --hhhhhhhhcccccCchhHhhHHHHhhhhhHHHHHHHHHHHHHhhhh
Confidence 0111223467789999999998888766777777777776666544
|
|
| >PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.3e-21 Score=177.47 Aligned_cols=182 Identities=30% Similarity=0.372 Sum_probs=144.4
Q ss_pred EEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCCCEEEE
Q 047227 10 CVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGAEVVFH 89 (485)
Q Consensus 10 iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~d~Vih 89 (485)
|+|+||||++|+.+++.|+++| ++|+++.|++.+. .. .++++++.+|+.|++++.++++++|+|||
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~-~~V~~~~R~~~~~----------~~---~~~~~~~~~d~~d~~~~~~al~~~d~vi~ 66 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRG-HEVTALVRSPSKA----------ED---SPGVEIIQGDLFDPDSVKAALKGADAVIH 66 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT-SEEEEEESSGGGH----------HH---CTTEEEEESCTTCHHHHHHHHTTSSEEEE
T ss_pred eEEECCCChHHHHHHHHHHHCC-CEEEEEecCchhc----------cc---ccccccceeeehhhhhhhhhhhhcchhhh
Confidence 7999999999999999999999 6999999986521 11 57899999999999999999999999999
Q ss_pred cCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCccccccCCCCcCCCCCCCCCCCCCCchHHHHHHHHHHH
Q 047227 90 MAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDFYSATKAEGEAL 169 (485)
Q Consensus 90 ~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy~~~~~~~~~~~e~~~~~~~~~~~Y~~sK~~~E~~ 169 (485)
++++... +...+++++++|++.+++|+|++||.++|.+.......... .....|...|..+|+.
T Consensus 67 ~~~~~~~----------~~~~~~~~~~a~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~e~~ 130 (183)
T PF13460_consen 67 AAGPPPK----------DVDAAKNIIEAAKKAGVKRVVYLSSAGVYRDPPGLFSDEDK------PIFPEYARDKREAEEA 130 (183)
T ss_dssp CCHSTTT----------HHHHHHHHHHHHHHTTSSEEEEEEETTGTTTCTSEEEGGTC------GGGHHHHHHHHHHHHH
T ss_pred hhhhhcc----------cccccccccccccccccccceeeeccccCCCCCcccccccc------cchhhhHHHHHHHHHH
Confidence 9984333 27888999999999999999999999998643322111111 1225788999999999
Q ss_pred HHHHhCCCCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCceeecccHHHHHHHHHHHHH
Q 047227 170 VIKANGTNGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICAER 238 (485)
Q Consensus 170 ~~~~~~~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~D~a~a~~~~~~ 238 (485)
++. .+++++++||+.+||+... . .......+....++|+.+|+|++++.+++
T Consensus 131 ~~~----~~~~~~ivrp~~~~~~~~~------------~-~~~~~~~~~~~~~~i~~~DvA~~~~~~l~ 182 (183)
T PF13460_consen 131 LRE----SGLNWTIVRPGWIYGNPSR------------S-YRLIKEGGPQGVNFISREDVAKAIVEALE 182 (183)
T ss_dssp HHH----STSEEEEEEESEEEBTTSS------------S-EEEESSTSTTSHCEEEHHHHHHHHHHHHH
T ss_pred HHh----cCCCEEEEECcEeEeCCCc------------c-eeEEeccCCCCcCcCCHHHHHHHHHHHhC
Confidence 875 4899999999999998532 1 11111144556699999999999998875
|
... |
| >PRK13394 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.8e-22 Score=193.87 Aligned_cols=234 Identities=19% Similarity=0.164 Sum_probs=162.0
Q ss_pred CCCCCCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhh-cCCCeEEEEecCCCHHHHHH
Q 047227 1 MSGEENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEAL-RSGRAHYVSFDLRHKAQVLQ 79 (485)
Q Consensus 1 M~~~~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~ 79 (485)
|+...+++++|||||+|+||+++++.|+++| ++|.+++|.+...... ..... ...++.++.+|++|.+.+.+
T Consensus 1 ~~~~~~~~~vlItGasg~iG~~la~~l~~~G-~~v~~~~r~~~~~~~~------~~~~~~~~~~~~~~~~Dl~~~~~~~~ 73 (262)
T PRK13394 1 MMSNLNGKTAVVTGAASGIGKEIALELARAG-AAVAIADLNQDGANAV------ADEINKAGGKAIGVAMDVTNEDAVNA 73 (262)
T ss_pred CcccCCCCEEEEECCCChHHHHHHHHHHHCC-CeEEEEeCChHHHHHH------HHHHHhcCceEEEEECCCCCHHHHHH
Confidence 4545567899999999999999999999999 5888888865321110 11111 12457889999999998887
Q ss_pred Hhc-------CCCEEEEcCCCCC-------CCCchhhhHHHHHHH----HHHHHHHH-HhcCCCEEEEecCccccccCCC
Q 047227 80 ALQ-------GAEVVFHMAAPNS-------SINNHKLHHSVNVEG----TKNVIDAC-AELKVKRLIYTSSPSVVFDGVH 140 (485)
Q Consensus 80 ~~~-------~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~----t~~ll~a~-~~~~v~r~V~~SS~~vy~~~~~ 140 (485)
+++ ++|+|||+++... ..++++..+++|+.+ +.++++++ ++.+.+++|++||...+.
T Consensus 74 ~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~~~~iv~~ss~~~~~---- 149 (262)
T PRK13394 74 GIDKVAERFGSVDILVSNAGIQIVNPIENYSFADWKKMQAIHVDGAFLTTKAALKHMYKDDRGGVVIYMGSVHSHE---- 149 (262)
T ss_pred HHHHHHHHcCCCCEEEECCccCCCCchhhCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhhcCCcEEEEEcchhhcC----
Confidence 765 3899999999421 223456678899999 77777777 667788999999964431
Q ss_pred CcCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCChHHHHHHHHc---CCCeEEe
Q 047227 141 GIINGNEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLLVPSLVAAARA---GKSKFII 214 (485)
Q Consensus 141 ~~~~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~---g~~~~~~ 214 (485)
+..+.+.|+.+|...+.+++.++.+ .+++++++||+.+++|.....++........ .....++
T Consensus 150 -----------~~~~~~~y~~sk~a~~~~~~~la~~~~~~~i~v~~v~pg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (262)
T PRK13394 150 -----------ASPLKSAYVTAKHGLLGLARVLAKEGAKHNVRSHVVCPGFVRTPLVDKQIPEQAKELGISEEEVVKKVM 218 (262)
T ss_pred -----------CCCCCcccHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcccchhhhhhhHhhhhccCCChHHHHHHHH
Confidence 1234568999999999998887654 5899999999999998643222221110000 0000122
Q ss_pred cCCCceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCCC
Q 047227 215 GDGNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMES 262 (485)
Q Consensus 215 g~g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~ 262 (485)
+.+....+|++++|+++++..++..... ...|+.|+++++..
T Consensus 219 ~~~~~~~~~~~~~dva~a~~~l~~~~~~------~~~g~~~~~~~g~~ 260 (262)
T PRK13394 219 LGKTVDGVFTTVEDVAQTVLFLSSFPSA------ALTGQSFVVSHGWF 260 (262)
T ss_pred hcCCCCCCCCCHHHHHHHHHHHcCcccc------CCcCCEEeeCCcee
Confidence 2344567899999999999988753221 24578899887643
|
|
| >PRK06482 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.2e-21 Score=189.63 Aligned_cols=227 Identities=20% Similarity=0.112 Sum_probs=163.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc-----
Q 047227 8 RLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ----- 82 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~----- 82 (485)
|++|||||+|+||++++++|+++| +.|.++.|...... .+... ...++.++.+|++|.+++.++++
T Consensus 3 k~vlVtGasg~IG~~la~~L~~~g-~~v~~~~r~~~~~~-------~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 73 (276)
T PRK06482 3 KTWFITGASSGFGRGMTERLLARG-DRVAATVRRPDALD-------DLKAR-YGDRLWVLQLDVTDSAAVRAVVDRAFAA 73 (276)
T ss_pred CEEEEecCCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHH-------HHHHh-ccCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 689999999999999999999999 58998887643110 01111 13478899999999998877664
Q ss_pred --CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHH----HhcCCCEEEEecCccccccCCCCcCCCCCCC
Q 047227 83 --GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDAC----AELKVKRLIYTSSPSVVFDGVHGIINGNEAL 149 (485)
Q Consensus 83 --~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~----~~~~v~r~V~~SS~~vy~~~~~~~~~~~e~~ 149 (485)
++|+|||+||... ...++...+++|+.++.++++++ ++.+.+++|++||.....
T Consensus 74 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~------------- 140 (276)
T PRK06482 74 LGRIDVVVSNAGYGLFGAAEELSDAQIRRQIDTNLIGSIQVIRAALPHLRRQGGGRIVQVSSEGGQI------------- 140 (276)
T ss_pred cCCCCEEEECCCCCCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcCccccc-------------
Confidence 4799999999322 12244667889999999999997 566778999999965431
Q ss_pred CCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCc---ccCCCCC----------ChHHHHHHHHcCCCeEE
Q 047227 150 PYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSI---FGPGDRL----------LVPSLVAAARAGKSKFI 213 (485)
Q Consensus 150 ~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v---~Gp~~~~----------~~~~~~~~~~~g~~~~~ 213 (485)
+..+.+.|+.+|...|.+++.++++ +|++++++||+.+ ||++... ....+.+... .+...+
T Consensus 141 --~~~~~~~Y~~sK~a~~~~~~~l~~~~~~~gi~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 217 (276)
T PRK06482 141 --AYPGFSLYHATKWGIEGFVEAVAQEVAPFGIEFTIVEPGPARTNFGAGLDRGAPLDAYDDTPVGDLRRALA-DGSFAI 217 (276)
T ss_pred --CCCCCchhHHHHHHHHHHHHHHHHHhhccCcEEEEEeCCccccCCcccccccCCCccccchhhHHHHHHHh-hccCCC
Confidence 1234578999999999999887654 6899999999987 6654221 1111222222 222211
Q ss_pred ecCCCceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCCCccHHHHHHHHHHHcC
Q 047227 214 IGDGNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLG 277 (485)
Q Consensus 214 ~g~g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~~t~~el~~~i~~~~g 277 (485)
+.+++|++++++.++.. + ..+..||+++++..+..|+++.+.+.++
T Consensus 218 ---------~~d~~~~~~a~~~~~~~--------~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 263 (276)
T PRK06482 218 ---------PGDPQKMVQAMIASADQ--------T-PAPRRLTLGSDAYASIRAALSERLAALE 263 (276)
T ss_pred ---------CCCHHHHHHHHHHHHcC--------C-CCCeEEecChHHHHHHHHHHHHHHHHHH
Confidence 35689999999988652 1 3356799999988888888887777664
|
|
| >PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.4e-21 Score=181.24 Aligned_cols=225 Identities=21% Similarity=0.137 Sum_probs=160.3
Q ss_pred CCCCCCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhh--hcCCCeEEEEecCCCHHHHH
Q 047227 1 MSGEENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEA--LRSGRAHYVSFDLRHKAQVL 78 (485)
Q Consensus 1 M~~~~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~Dl~d~~~l~ 78 (485)
|+ .+++|+||||||+|++|++++++|+++|+ +|+++.+....... . .... ....++.++.+|+.|++.+.
T Consensus 1 ~~-~~~~~~vlItGasg~iG~~l~~~l~~~g~-~v~~~~~~~~~~~~---~---~~~~~~~~~~~~~~~~~D~~~~~~v~ 72 (249)
T PRK12825 1 MG-SLMGRVALVTGAARGLGRAIALRLARAGA-DVVVHYRSDEEAAE---E---LVEAVEALGRRAQAVQADVTDKAALE 72 (249)
T ss_pred CC-CCCCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCCHHHHH---H---HHHHHHhcCCceEEEECCcCCHHHHH
Confidence 54 34568999999999999999999999995 77776655331110 0 1111 12356889999999999888
Q ss_pred HHhc-------CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHH----HhcCCCEEEEecCccccccCCC
Q 047227 79 QALQ-------GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDAC----AELKVKRLIYTSSPSVVFDGVH 140 (485)
Q Consensus 79 ~~~~-------~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~----~~~~v~r~V~~SS~~vy~~~~~ 140 (485)
++++ ++|+|||+++... ...++...+++|+.++.++++++ ++.+++++|++||...+.+
T Consensus 73 ~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~i~~SS~~~~~~--- 149 (249)
T PRK12825 73 AAVAAAVERFGRIDILVNNAGIFEDKPLADMSDDEWDEVIDVNLSGVFHLLRAVVPPMRKQRGGRIVNISSVAGLPG--- 149 (249)
T ss_pred HHHHHHHHHcCCCCEEEECCccCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEECccccCCC---
Confidence 7764 4799999999321 22345677899999999999887 4567889999999877631
Q ss_pred CcCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCC
Q 047227 141 GIINGNEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDG 217 (485)
Q Consensus 141 ~~~~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g 217 (485)
..+...|+.+|...|.+++.+++. .+++++++||+.++|+............ ..+ .
T Consensus 150 ------------~~~~~~y~~sK~~~~~~~~~~~~~~~~~~i~~~~i~pg~~~~~~~~~~~~~~~~~---~~~------~ 208 (249)
T PRK12825 150 ------------WPGRSNYAAAKAGLVGLTKALARELAEYGITVNMVAPGDIDTDMKEATIEEAREA---KDA------E 208 (249)
T ss_pred ------------CCCchHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEEECCccCCccccccchhHHh---hhc------c
Confidence 234568999999999998876553 6899999999999998654322211111 110 1
Q ss_pred CceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCCCc
Q 047227 218 NNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMESI 263 (485)
Q Consensus 218 ~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~~ 263 (485)
.....+++++|+++++..+++... ....|+.|+++++..+
T Consensus 209 ~~~~~~~~~~dva~~~~~~~~~~~------~~~~g~~~~i~~g~~~ 248 (249)
T PRK12825 209 TPLGRSGTPEDIARAVAFLCSDAS------DYITGQVIEVTGGVDV 248 (249)
T ss_pred CCCCCCcCHHHHHHHHHHHhCccc------cCcCCCEEEeCCCEee
Confidence 112338999999999998875321 1256899999987643
|
|
| >PRK09135 pteridine reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.4e-20 Score=179.13 Aligned_cols=221 Identities=17% Similarity=0.124 Sum_probs=154.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhh---cCCCeEEEEecCCCHHHHHHHhc
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEAL---RSGRAHYVSFDLRHKAQVLQALQ 82 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~Dl~d~~~l~~~~~ 82 (485)
++++||||||+|+||++++++|+++| ++|++++|...... +. ....+ ....+.++.+|++|.+++.++++
T Consensus 5 ~~~~vlItGa~g~iG~~l~~~l~~~g-~~v~~~~r~~~~~~---~~---~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 77 (249)
T PRK09135 5 SAKVALITGGARRIGAAIARTLHAAG-YRVAIHYHRSAAEA---DA---LAAELNALRPGSAAALQADLLDPDALPELVA 77 (249)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCC-CEEEEEcCCCHHHH---HH---HHHHHHhhcCCceEEEEcCCCCHHHHHHHHH
Confidence 45799999999999999999999999 69999887642110 00 11111 12358889999999998888775
Q ss_pred -------CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHHHhc---CCCEEEEecCccccccCCCCcCCC
Q 047227 83 -------GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDACAEL---KVKRLIYTSSPSVVFDGVHGIING 145 (485)
Q Consensus 83 -------~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~~~~---~v~r~V~~SS~~vy~~~~~~~~~~ 145 (485)
++|+|||+|+... ...+++.++++|+.++.++++++... .-.+++++|+...
T Consensus 78 ~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~----------- 146 (249)
T PRK09135 78 ACVAAFGRLDALVNNASSFYPTPLGSITEAQWDDLFASNLKAPFFLSQAAAPQLRKQRGAIVNITDIHA----------- 146 (249)
T ss_pred HHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhchhHHHHHHHHHHHHhhCCeEEEEEeChhh-----------
Confidence 4799999999321 12345778899999999999999642 1235666554211
Q ss_pred CCCCCCCCCCCchHHHHHHHHHHHHHHHhCCC--CceEEEEecCCcccCCCCCChHHH-HHHHHcCCCeEEecCCCceee
Q 047227 146 NEALPYPPKHNDFYSATKAEGEALVIKANGTN--GLLTCCIRPSSIFGPGDRLLVPSL-VAAARAGKSKFIIGDGNNVYD 222 (485)
Q Consensus 146 ~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~--g~~~~ilRp~~v~Gp~~~~~~~~~-~~~~~~g~~~~~~g~g~~~~~ 222 (485)
.. +..+.+.|+.+|..+|.+++.++.+. +++++++||+.++||.+...++.. ......+.+.. .
T Consensus 147 --~~--~~~~~~~Y~~sK~~~~~~~~~l~~~~~~~i~~~~v~pg~~~~~~~~~~~~~~~~~~~~~~~~~~---------~ 213 (249)
T PRK09135 147 --ER--PLKGYPVYCAAKAALEMLTRSLALELAPEVRVNAVAPGAILWPEDGNSFDEEARQAILARTPLK---------R 213 (249)
T ss_pred --cC--CCCCchhHHHHHHHHHHHHHHHHHHHCCCCeEEEEEeccccCccccccCCHHHHHHHHhcCCcC---------C
Confidence 11 34567899999999999999887553 699999999999999865433333 22333332211 1
Q ss_pred cccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCCCcc
Q 047227 223 FTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMESIK 264 (485)
Q Consensus 223 ~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~~t 264 (485)
+.+++|+|+++..++.. .....|++||+++++.++
T Consensus 214 ~~~~~d~a~~~~~~~~~-------~~~~~g~~~~i~~g~~~~ 248 (249)
T PRK09135 214 IGTPEDIAEAVRFLLAD-------ASFITGQILAVDGGRSLT 248 (249)
T ss_pred CcCHHHHHHHHHHHcCc-------cccccCcEEEECCCeecc
Confidence 23489999999766532 112568999999987554
|
|
| >TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.9e-20 Score=178.95 Aligned_cols=222 Identities=16% Similarity=0.157 Sum_probs=155.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhh--cCCCeEEEEecCCCHHHHHHHh---
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEAL--RSGRAHYVSFDLRHKAQVLQAL--- 81 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~Dl~d~~~l~~~~--- 81 (485)
++++|||||+|++|+++++.|+++| ++|++++|....... +...+ ...++..+.+|+.|++++.+++
T Consensus 1 ~~~vlItGa~g~lG~~l~~~l~~~g-~~v~~~~r~~~~~~~-------~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 72 (255)
T TIGR01963 1 GKTALVTGAASGIGLAIALALAAAG-ANVVVNDLGEAGAEA-------AAKVATDAGGSVIYLVADVTKEDEIADMIAAA 72 (255)
T ss_pred CCEEEEcCCcchHHHHHHHHHHHCC-CEEEEEeCCHHHHHH-------HHHHHHhcCCceEEEECCCCCHHHHHHHHHHH
Confidence 3689999999999999999999999 589999886431110 11111 1346888999999998665544
Q ss_pred ----cCCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHH----HhcCCCEEEEecCccccccCCCCcCCCC
Q 047227 82 ----QGAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDAC----AELKVKRLIYTSSPSVVFDGVHGIINGN 146 (485)
Q Consensus 82 ----~~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~----~~~~v~r~V~~SS~~vy~~~~~~~~~~~ 146 (485)
.+.|+|||+++... ...+.+..+++|+.++.++++++ ++.+++++|++||...+.+
T Consensus 73 ~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~~~v~~ss~~~~~~--------- 143 (255)
T TIGR01963 73 AAEFGGLDILVNNAGIQHVAPIEEFPPEDWDRIIAIMLTSAFHTIRAALPHMKKQGWGRIINIASAHGLVA--------- 143 (255)
T ss_pred HHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCeEEEEEcchhhcCC---------
Confidence 35899999999322 11234566789999988888777 5567889999999765531
Q ss_pred CCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeE-------EecC
Q 047227 147 EALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKF-------IIGD 216 (485)
Q Consensus 147 e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~-------~~g~ 216 (485)
....+.|+.+|...|.+.+.++.+ .+++++++||+.+++|.....+.. ... +.... ....
T Consensus 144 ------~~~~~~y~~sk~a~~~~~~~~~~~~~~~~i~v~~i~pg~v~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~ 213 (255)
T TIGR01963 144 ------SPFKSAYVAAKHGLIGLTKVLALEVAAHGITVNAICPGYVRTPLVEKQIAD---QAK-TRGIPEEQVIREVMLP 213 (255)
T ss_pred ------CCCCchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCccccHHHHHHHHh---hhc-ccCCCchHHHHHHHHc
Confidence 123467999999999998876543 489999999999998853211111 111 11110 0123
Q ss_pred CCceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCC
Q 047227 217 GNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNME 261 (485)
Q Consensus 217 g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~ 261 (485)
+.+.+++++++|+|++++.++..... ...|+.|+++++.
T Consensus 214 ~~~~~~~~~~~d~a~~~~~~~~~~~~------~~~g~~~~~~~g~ 252 (255)
T TIGR01963 214 GQPTKRFVTVDEVAETALFLASDAAA------GITGQAIVLDGGW 252 (255)
T ss_pred cCccccCcCHHHHHHHHHHHcCcccc------CccceEEEEcCcc
Confidence 44567899999999999988763211 2468899998764
|
This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species. |
| >PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.1e-20 Score=176.98 Aligned_cols=221 Identities=18% Similarity=0.096 Sum_probs=159.2
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhh-cCCCeEEEEecCCCHHHHHHHhc-
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEAL-RSGRAHYVSFDLRHKAQVLQALQ- 82 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~- 82 (485)
.++|+||||||+|++|.++++.|+++| ++|++++|....... ...... ...++.++.+|+.|.+++.++++
T Consensus 4 ~~~~~ilItGasg~iG~~l~~~l~~~g-~~V~~~~r~~~~~~~------~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~ 76 (251)
T PRK12826 4 LEGRVALVTGAARGIGRAIAVRLAADG-AEVIVVDICGDDAAA------TAELVEAAGGKARARQVDVRDRAALKAAVAA 76 (251)
T ss_pred CCCCEEEEcCCCCcHHHHHHHHHHHCC-CEEEEEeCCHHHHHH------HHHHHHhcCCeEEEEECCCCCHHHHHHHHHH
Confidence 456899999999999999999999999 689999887431110 011111 12458899999999998888775
Q ss_pred ------CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHHH----hcCCCEEEEecCccccccCCCCcCCC
Q 047227 83 ------GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDACA----ELKVKRLIYTSSPSVVFDGVHGIING 145 (485)
Q Consensus 83 ------~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~~----~~~v~r~V~~SS~~vy~~~~~~~~~~ 145 (485)
++|+|||+++... ...++...+++|+.++.++++++. +.+.+++|++||...+..
T Consensus 77 ~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~~ss~~~~~~-------- 148 (251)
T PRK12826 77 GVEDFGRLDILVANAGIFPLTPFAEMDDEQWERVIDVNLTGTFLLTQAALPALIRAGGGRIVLTSSVAGPRV-------- 148 (251)
T ss_pred HHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEEechHhhcc--------
Confidence 5899999998322 233556789999999999998874 456789999999765410
Q ss_pred CCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCChHHH-HHHHHcCCCeEEecCCCcee
Q 047227 146 NEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLLVPSL-VAAARAGKSKFIIGDGNNVY 221 (485)
Q Consensus 146 ~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~~~~~-~~~~~~g~~~~~~g~g~~~~ 221 (485)
+..+...|+.+|..+|.+++.++.. .+++++++||+.++||......... ...+..+.+ ..
T Consensus 149 ------~~~~~~~y~~sK~a~~~~~~~~~~~~~~~~i~~~~i~pg~~~~~~~~~~~~~~~~~~~~~~~~---------~~ 213 (251)
T PRK12826 149 ------GYPGLAHYAASKAGLVGFTRALALELAARNITVNSVHPGGVDTPMAGNLGDAQWAEAIAAAIP---------LG 213 (251)
T ss_pred ------CCCCccHHHHHHHHHHHHHHHHHHHHHHcCeEEEEEeeCCCCcchhhhcCchHHHHHHHhcCC---------CC
Confidence 1234568999999999999887543 5899999999999998654322221 222222222 12
Q ss_pred ecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCC
Q 047227 222 DFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNME 261 (485)
Q Consensus 222 ~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~ 261 (485)
.+++++|+|.++..++..... ...|+.|++.++.
T Consensus 214 ~~~~~~dva~~~~~l~~~~~~------~~~g~~~~~~~g~ 247 (251)
T PRK12826 214 RLGEPEDIAAAVLFLASDEAR------YITGQTLPVDGGA 247 (251)
T ss_pred CCcCHHHHHHHHHHHhCcccc------CcCCcEEEECCCc
Confidence 588999999999887653221 1568999998754
|
|
| >PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA | Back alignment and domain information |
|---|
Probab=99.86 E-value=8.2e-21 Score=179.19 Aligned_cols=227 Identities=23% Similarity=0.269 Sum_probs=163.8
Q ss_pred EEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCCCEEEE
Q 047227 10 CVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGAEVVFH 89 (485)
Q Consensus 10 iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~d~Vih 89 (485)
|+|+||||.+|+++++.|++.+ +.|+++.|..+.. ..+.++..+++.+.+|+.|++++.++|+|+|+||.
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~-~~V~~l~R~~~~~---------~~~~l~~~g~~vv~~d~~~~~~l~~al~g~d~v~~ 70 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAG-FSVRALVRDPSSD---------RAQQLQALGAEVVEADYDDPESLVAALKGVDAVFS 70 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT-GCEEEEESSSHHH---------HHHHHHHTTTEEEES-TT-HHHHHHHHTTCSEEEE
T ss_pred CEEECCccHHHHHHHHHHHhCC-CCcEEEEeccchh---------hhhhhhcccceEeecccCCHHHHHHHHcCCceEEe
Confidence 7999999999999999999988 6999999976321 23334456889999999999999999999999998
Q ss_pred cCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCccccccCCCCcCCCCCCCCCCCCCCchHHHHHHHHHHH
Q 047227 90 MAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDFYSATKAEGEAL 169 (485)
Q Consensus 90 ~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy~~~~~~~~~~~e~~~~~~~~~~~Y~~sK~~~E~~ 169 (485)
+.+... ........++++||++.||++||+.|....+ ++.. ...|..+.-..|...|+.
T Consensus 71 ~~~~~~---------~~~~~~~~~li~Aa~~agVk~~v~ss~~~~~----------~~~~--~~~p~~~~~~~k~~ie~~ 129 (233)
T PF05368_consen 71 VTPPSH---------PSELEQQKNLIDAAKAAGVKHFVPSSFGADY----------DESS--GSEPEIPHFDQKAEIEEY 129 (233)
T ss_dssp ESSCSC---------CCHHHHHHHHHHHHHHHT-SEEEESEESSGT----------TTTT--TSTTHHHHHHHHHHHHHH
T ss_pred ecCcch---------hhhhhhhhhHHHhhhccccceEEEEEecccc----------cccc--cccccchhhhhhhhhhhh
Confidence 887433 2234456789999999999999976644332 1110 123344556789999999
Q ss_pred HHHHhCCCCceEEEEecCCcccCCCCCChHHHHHHHHcC-CCeEEecCCCceeecc-cHHHHHHHHHHHHHHhccccchh
Q 047227 170 VIKANGTNGLLTCCIRPSSIFGPGDRLLVPSLVAAARAG-KSKFIIGDGNNVYDFT-YVANVAHAHICAERALASEVTVA 247 (485)
Q Consensus 170 ~~~~~~~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g-~~~~~~g~g~~~~~~i-~v~D~a~a~~~~~~~~~~~~~~~ 247 (485)
+++ .+++++++||+..+......+.. +. ..... ..+.+.++++....++ +.+|++++...++..+..
T Consensus 130 l~~----~~i~~t~i~~g~f~e~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Dvg~~va~il~~p~~----- 198 (233)
T PF05368_consen 130 LRE----SGIPYTIIRPGFFMENLLPPFAP-VV-DIKKSKDVVTLPGPGNQKAVPVTDTRDVGRAVAAILLDPEK----- 198 (233)
T ss_dssp HHH----CTSEBEEEEE-EEHHHHHTTTHH-TT-CSCCTSSEEEEETTSTSEEEEEEHHHHHHHHHHHHHHSGGG-----
T ss_pred hhh----ccccceeccccchhhhhhhhhcc-cc-cccccceEEEEccCCCccccccccHHHHHHHHHHHHcChHH-----
Confidence 988 49999999999877542111111 00 11222 2467788888777775 999999999999874211
Q ss_pred hcc-CCcEEEeeCCCCccHHHHHHHHHHHcCCCCC
Q 047227 248 EKA-AGQAYFVTNMESIKFWEFVSLILEGLGYQRP 281 (485)
Q Consensus 248 ~~~-~g~~ynv~~~~~~t~~el~~~i~~~~g~~~~ 281 (485)
. .++.+.+++ +.+|+.|+++.+.+.+|++..
T Consensus 199 --~~~~~~~~~~~-~~~t~~eia~~~s~~~G~~v~ 230 (233)
T PF05368_consen 199 --HNNGKTIFLAG-ETLTYNEIAAILSKVLGKKVK 230 (233)
T ss_dssp --TTEEEEEEEGG-GEEEHHHHHHHHHHHHTSEEE
T ss_pred --hcCCEEEEeCC-CCCCHHHHHHHHHHHHCCccE
Confidence 2 467777766 889999999999999998643
|
NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B .... |
| >PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=6e-20 Score=188.41 Aligned_cols=235 Identities=20% Similarity=0.173 Sum_probs=162.2
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhh-hh------cCCCeEEEEecCCCHHHH
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGE-AL------RSGRAHYVSFDLRHKAQV 77 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~-~~------~~~~v~~~~~Dl~d~~~l 77 (485)
+++++||||||+|+||++++++|+++| ++|++++|........... +.. .+ ...+++++.+|+.|.+++
T Consensus 78 ~~gKvVLVTGATGgIG~aLAr~LLk~G-~~Vval~Rn~ekl~~l~~~---l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI 153 (576)
T PLN03209 78 KDEDLAFVAGATGKVGSRTVRELLKLG-FRVRAGVRSAQRAESLVQS---VKQMKLDVEGTQPVEKLEIVECDLEKPDQI 153 (576)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCC-CeEEEEeCCHHHHHHHHHH---hhhhccccccccccCceEEEEecCCCHHHH
Confidence 467899999999999999999999999 5999988865421100000 000 00 113588999999999999
Q ss_pred HHHhcCCCEEEEcCCCCC-CCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCccccccCCCCcCCCCCCCCCCCCCC
Q 047227 78 LQALQGAEVVFHMAAPNS-SINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVVFDGVHGIINGNEALPYPPKHN 156 (485)
Q Consensus 78 ~~~~~~~d~Vih~aa~~~-~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy~~~~~~~~~~~e~~~~~~~~~ 156 (485)
.+++.++|+|||++|... ...++...+++|+.|+.+++++|++.+++|||++||.+++..+. ... .....
T Consensus 154 ~~aLggiDiVVn~AG~~~~~v~d~~~~~~VN~~Gt~nLl~Aa~~agVgRIV~VSSiga~~~g~------p~~---~~~sk 224 (576)
T PLN03209 154 GPALGNASVVICCIGASEKEVFDVTGPYRIDYLATKNLVDAATVAKVNHFILVTSLGTNKVGF------PAA---ILNLF 224 (576)
T ss_pred HHHhcCCCEEEEccccccccccchhhHHHHHHHHHHHHHHHHHHhCCCEEEEEccchhcccCc------ccc---chhhH
Confidence 999999999999998432 22245667899999999999999999999999999986631110 000 01234
Q ss_pred chHHHHHHHHHHHHHHHhCCCCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCceeecccHHHHHHHHHHH
Q 047227 157 DFYSATKAEGEALVIKANGTNGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICA 236 (485)
Q Consensus 157 ~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~D~a~a~~~~ 236 (485)
..|...|..+|+.+.. .|++++++|||.++++.+... ..+. +............+..+|+|++++.+
T Consensus 225 ~~~~~~KraaE~~L~~----sGIrvTIVRPG~L~tp~d~~~--------~t~~-v~~~~~d~~~gr~isreDVA~vVvfL 291 (576)
T PLN03209 225 WGVLCWKRKAEEALIA----SGLPYTIVRPGGMERPTDAYK--------ETHN-LTLSEEDTLFGGQVSNLQVAELMACM 291 (576)
T ss_pred HHHHHHHHHHHHHHHH----cCCCEEEEECCeecCCccccc--------cccc-eeeccccccCCCccCHHHHHHHHHHH
Confidence 5677889999998875 689999999999998754321 0111 11111111222357899999999987
Q ss_pred HHHhccccchhhccCCcEEEeeCCCC---ccHHHHHHHH
Q 047227 237 ERALASEVTVAEKAAGQAYFVTNMES---IKFWEFVSLI 272 (485)
Q Consensus 237 ~~~~~~~~~~~~~~~g~~ynv~~~~~---~t~~el~~~i 272 (485)
+.. .....+++|.+.++.. ..+.++++.+
T Consensus 292 asd-------~~as~~kvvevi~~~~~p~~~~~~~~~~i 323 (576)
T PLN03209 292 AKN-------RRLSYCKVVEVIAETTAPLTPMEELLAKI 323 (576)
T ss_pred HcC-------chhccceEEEEEeCCCCCCCCHHHHHHhc
Confidence 652 1125578999988642 3455554433
|
|
| >PRK05875 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.6e-20 Score=179.38 Aligned_cols=243 Identities=21% Similarity=0.177 Sum_probs=168.7
Q ss_pred CCCCCCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHH
Q 047227 1 MSGEENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQA 80 (485)
Q Consensus 1 M~~~~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~ 80 (485)
|+..++++++|||||+|+||+++++.|+++| ++|.+++|..........+ +.......++.++.+|++|++++.++
T Consensus 1 ~~~~~~~k~vlItGasg~IG~~la~~l~~~G-~~V~~~~r~~~~~~~~~~~---l~~~~~~~~~~~~~~Dl~~~~~~~~~ 76 (276)
T PRK05875 1 MQLSFQDRTYLVTGGGSGIGKGVAAGLVAAG-AAVMIVGRNPDKLAAAAEE---IEALKGAGAVRYEPADVTDEDQVARA 76 (276)
T ss_pred CCcCCCCCEEEEECCCcHHHHHHHHHHHHCC-CeEEEEeCCHHHHHHHHHH---HHhccCCCceEEEEcCCCCHHHHHHH
Confidence 3444567899999999999999999999999 5899998864321110000 01000124678899999999988877
Q ss_pred hc-------CCCEEEEcCCCCC--------CCCchhhhHHHHHHHHHHHHHHHHhc----CCCEEEEecCccccccCCCC
Q 047227 81 LQ-------GAEVVFHMAAPNS--------SINNHKLHHSVNVEGTKNVIDACAEL----KVKRLIYTSSPSVVFDGVHG 141 (485)
Q Consensus 81 ~~-------~~d~Vih~aa~~~--------~~~~~~~~~~~nv~~t~~ll~a~~~~----~v~r~V~~SS~~vy~~~~~~ 141 (485)
++ ++|+|||+++... ..+++..++++|+.++.++++++.+. +..++|++||...+.
T Consensus 77 ~~~~~~~~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~~sS~~~~~----- 151 (276)
T PRK05875 77 VDAATAWHGRLHGVVHCAGGSETIGPITQIDSDAWRRTVDLNVNGTMYVLKHAARELVRGGGGSFVGISSIAASN----- 151 (276)
T ss_pred HHHHHHHcCCCCEEEECCCcccCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEechhhcC-----
Confidence 65 5899999998321 12235678899999999998877653 345899999977652
Q ss_pred cCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCCh--HHHHHHHHcCCCeEEecC
Q 047227 142 IINGNEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLLV--PSLVAAARAGKSKFIIGD 216 (485)
Q Consensus 142 ~~~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~~--~~~~~~~~~g~~~~~~g~ 216 (485)
+..+.+.|+.+|...|.+++.+..+ .+++++++||+.+.++...... ..........
T Consensus 152 ----------~~~~~~~Y~~sK~a~~~~~~~~~~~~~~~~i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~-------- 213 (276)
T PRK05875 152 ----------THRWFGAYGVTKSAVDHLMKLAADELGPSWVRVNSIRPGLIRTDLVAPITESPELSADYRAC-------- 213 (276)
T ss_pred ----------CCCCCcchHHHHHHHHHHHHHHHHHhcccCeEEEEEecCccCCccccccccCHHHHHHHHcC--------
Confidence 1234578999999999999987654 4699999999998776432111 1111111111
Q ss_pred CCceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCCCc----cHHHHHHHHHHHcC
Q 047227 217 GNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMESI----KFWEFVSLILEGLG 277 (485)
Q Consensus 217 g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~~----t~~el~~~i~~~~g 277 (485)
.....+++++|+|+++..++...... ..|+.|++++++.+ +..|+++.+.+..|
T Consensus 214 -~~~~~~~~~~dva~~~~~l~~~~~~~------~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 271 (276)
T PRK05875 214 -TPLPRVGEVEDVANLAMFLLSDAASW------ITGQVINVDGGHMLRRGPDFSSMLEPVFGADG 271 (276)
T ss_pred -CCCCCCcCHHHHHHHHHHHcCchhcC------cCCCEEEECCCeeccCCccHHHHHHHHhhHHH
Confidence 12234678999999999887632221 45899999988765 78888777765544
|
|
| >PRK12429 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=7.1e-21 Score=182.24 Aligned_cols=224 Identities=22% Similarity=0.226 Sum_probs=154.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhh--cCCCeEEEEecCCCHHHHHHHhc-
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEAL--RSGRAHYVSFDLRHKAQVLQALQ- 82 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~Dl~d~~~l~~~~~- 82 (485)
.++++|||||+|++|++++++|+++| ++|.+++|....... ....+ ...++..+.+|+.|++++.++++
T Consensus 3 ~~~~vlItG~sg~iG~~la~~l~~~g-~~v~~~~r~~~~~~~-------~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 74 (258)
T PRK12429 3 KGKVALVTGAASGIGLEIALALAKEG-AKVVIADLNDEAAAA-------AAEALQKAGGKAIGVAMDVTDEEAINAGIDY 74 (258)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC-CeEEEEeCCHHHHHH-------HHHHHHhcCCcEEEEEcCCCCHHHHHHHHHH
Confidence 35799999999999999999999999 689999886542111 11111 23568899999999998877765
Q ss_pred ------CCCEEEEcCCCCC-------CCCchhhhHHHHHHH----HHHHHHHHHhcCCCEEEEecCccccccCCCCcCCC
Q 047227 83 ------GAEVVFHMAAPNS-------SINNHKLHHSVNVEG----TKNVIDACAELKVKRLIYTSSPSVVFDGVHGIING 145 (485)
Q Consensus 83 ------~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~----t~~ll~a~~~~~v~r~V~~SS~~vy~~~~~~~~~~ 145 (485)
++|+|||+++... ...+.+..+++|+.+ +..++.++++.+.++||++||...+.
T Consensus 75 ~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~iss~~~~~--------- 145 (258)
T PRK12429 75 AVETFGGVDILVNNAGIQHVAPIEDFPTEKWKKMIAIMLDGAFLTTKAALPIMKAQGGGRIINMASVHGLV--------- 145 (258)
T ss_pred HHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcCCeEEEEEcchhhcc---------
Confidence 5899999998321 122345567889998 55555555666788999999976553
Q ss_pred CCCCCCCCCCCchHHHHHHHHHHHHHHHhC---CCCceEEEEecCCcccCCCCCChHHHHHHHHcCCCe-----EEecCC
Q 047227 146 NEALPYPPKHNDFYSATKAEGEALVIKANG---TNGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSK-----FIIGDG 217 (485)
Q Consensus 146 ~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~---~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~-----~~~g~g 217 (485)
+..+.+.|+.+|...+.+.+.++. ..++++.++||+.+++|.....+..... ..+.+. ..++..
T Consensus 146 ------~~~~~~~y~~~k~a~~~~~~~l~~~~~~~~i~v~~~~pg~v~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 217 (258)
T PRK12429 146 ------GSAGKAAYVSAKHGLIGLTKVVALEGATHGVTVNAICPGYVDTPLVRKQIPDLAK--ERGISEEEVLEDVLLPL 217 (258)
T ss_pred ------CCCCcchhHHHHHHHHHHHHHHHHHhcccCeEEEEEecCCCcchhhhhhhhhhcc--ccCCChHHHHHHHHhcc
Confidence 124567899999999988877654 3579999999999998864322211110 001000 011222
Q ss_pred CceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCC
Q 047227 218 NNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNM 260 (485)
Q Consensus 218 ~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~ 260 (485)
...+.+++++|+|+++..++.... ....|+.|++.++
T Consensus 218 ~~~~~~~~~~d~a~~~~~l~~~~~------~~~~g~~~~~~~g 254 (258)
T PRK12429 218 VPQKRFTTVEEIADYALFLASFAA------KGVTGQAWVVDGG 254 (258)
T ss_pred CCccccCCHHHHHHHHHHHcCccc------cCccCCeEEeCCC
Confidence 344679999999999988865321 1245888988876
|
|
| >PRK08263 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.2e-20 Score=182.69 Aligned_cols=228 Identities=15% Similarity=0.093 Sum_probs=160.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc----
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ---- 82 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~---- 82 (485)
+++||||||+|+||+++++.|+++| ++|++++|....... .... ....+.++.+|++|.+++.++++
T Consensus 3 ~k~vlItGasg~iG~~~a~~l~~~g-~~V~~~~r~~~~~~~-------~~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~ 73 (275)
T PRK08263 3 EKVWFITGASRGFGRAWTEAALERG-DRVVATARDTATLAD-------LAEK-YGDRLLPLALDVTDRAAVFAAVETAVE 73 (275)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCC-CEEEEEECCHHHHHH-------HHHh-ccCCeeEEEccCCCHHHHHHHHHHHHH
Confidence 4789999999999999999999999 589999886432100 1111 13467889999999988877664
Q ss_pred ---CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHH----HhcCCCEEEEecCccccccCCCCcCCCCCC
Q 047227 83 ---GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDAC----AELKVKRLIYTSSPSVVFDGVHGIINGNEA 148 (485)
Q Consensus 83 ---~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~----~~~~v~r~V~~SS~~vy~~~~~~~~~~~e~ 148 (485)
++|+|||+||... ..+++...+++|+.++.++++++ ++.+.+++|++||...+..
T Consensus 74 ~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~vsS~~~~~~----------- 142 (275)
T PRK08263 74 HFGRLDIVVNNAGYGLFGMIEEVTESEARAQIDTNFFGALWVTQAVLPYLREQRSGHIIQISSIGGISA----------- 142 (275)
T ss_pred HcCCCCEEEECCCCccccccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEcChhhcCC-----------
Confidence 4799999999322 22456778999999988887775 5667789999999776631
Q ss_pred CCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCC------C---hHHHHHHHHcCCCeEEecC
Q 047227 149 LPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRL------L---VPSLVAAARAGKSKFIIGD 216 (485)
Q Consensus 149 ~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~------~---~~~~~~~~~~g~~~~~~g~ 216 (485)
....+.|+.+|...+.+.+.++.+ +|++++++||+.+..+.... . ...+..... +
T Consensus 143 ----~~~~~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~Pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~---------~ 209 (275)
T PRK08263 143 ----FPMSGIYHASKWALEGMSEALAQEVAEFGIKVTLVEPGGYSTDWAGTSAKRATPLDAYDTLREELA---------E 209 (275)
T ss_pred ----CCCccHHHHHHHHHHHHHHHHHHHhhhhCcEEEEEecCCccCCccccccccCCCchhhhhHHHHHH---------H
Confidence 223467999999999988877653 68999999999887653210 0 111111111 1
Q ss_pred CCceeec-ccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCCCccHHHHHHHHHHH
Q 047227 217 GNNVYDF-TYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEG 275 (485)
Q Consensus 217 g~~~~~~-i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~~t~~el~~~i~~~ 275 (485)
......+ ++++|+|++++.+++. +...++.++.+.++.+++.++.+.+.+-
T Consensus 210 ~~~~~~~~~~p~dva~~~~~l~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (275)
T PRK08263 210 QWSERSVDGDPEAAAEALLKLVDA--------ENPPLRLFLGSGVLDLAKADYERRLATW 261 (275)
T ss_pred HHHhccCCCCHHHHHHHHHHHHcC--------CCCCeEEEeCchHHHHHHHHHHHHHHHH
Confidence 1122345 8899999999999772 2234444444444788999998888773
|
|
| >PRK07067 sorbitol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.4e-20 Score=180.23 Aligned_cols=229 Identities=19% Similarity=0.152 Sum_probs=160.6
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc--
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ-- 82 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 82 (485)
.+++++|||||+|+||.++++.|+++| ++|.+++|....... ....+ ..++.++.+|++|.+++.++++
T Consensus 4 l~~~~vlItGas~~iG~~ia~~l~~~G-~~v~~~~r~~~~~~~-------~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~ 74 (257)
T PRK07067 4 LQGKVALLTGAASGIGEAVAERYLAEG-ARVVIADIKPARARL-------AALEI-GPAAIAVSLDVTRQDSIDRIVAAA 74 (257)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcC-CEEEEEcCCHHHHHH-------HHHHh-CCceEEEEccCCCHHHHHHHHHHH
Confidence 346799999999999999999999999 689998876431110 11111 2458889999999998887765
Q ss_pred -----CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHHHhcC-----CCEEEEecCccccccCCCCcCCC
Q 047227 83 -----GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDACAELK-----VKRLIYTSSPSVVFDGVHGIING 145 (485)
Q Consensus 83 -----~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~~~~~-----v~r~V~~SS~~vy~~~~~~~~~~ 145 (485)
++|+|||+|+... ..++++..+++|+.++.++++++.... -.++|++||.....
T Consensus 75 ~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~--------- 145 (257)
T PRK07067 75 VERFGGIDILFNNAALFDMAPILDISRDSYDRLFAVNVKGLFFLMQAVARHMVEQGRGGKIINMASQAGRR--------- 145 (257)
T ss_pred HHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhcCCCcEEEEeCCHHhCC---------
Confidence 4899999998321 224567789999999999999986532 24899999954321
Q ss_pred CCCCCCCCCCCchHHHHHHHHHHHHHHHhC---CCCceEEEEecCCcccCCCCCChHHHHHHH--HcCCCeEEecCCCce
Q 047227 146 NEALPYPPKHNDFYSATKAEGEALVIKANG---TNGLLTCCIRPSSIFGPGDRLLVPSLVAAA--RAGKSKFIIGDGNNV 220 (485)
Q Consensus 146 ~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~---~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~--~~g~~~~~~g~g~~~ 220 (485)
+..+...|+.+|...+.+.+.++. ..+++++++||+.++++........+.... ..+......+.+.+.
T Consensus 146 ------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (257)
T PRK07067 146 ------GEALVSHYCATKAAVISYTQSAALALIRHGINVNAIAPGVVDTPMWDQVDALFARYENRPPGEKKRLVGEAVPL 219 (257)
T ss_pred ------CCCCCchhhhhHHHHHHHHHHHHHHhcccCeEEEEEeeCcccchhhhhhhhhhhhccCCCHHHHHHHHhhcCCC
Confidence 123567899999999999887764 468999999999999975322111110000 000001122344456
Q ss_pred eecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCCCc
Q 047227 221 YDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMESI 263 (485)
Q Consensus 221 ~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~~ 263 (485)
..+++++|+|+++..++..... -..|++|++.+++.+
T Consensus 220 ~~~~~~~dva~~~~~l~s~~~~------~~~g~~~~v~gg~~~ 256 (257)
T PRK07067 220 GRMGVPDDLTGMALFLASADAD------YIVAQTYNVDGGNWM 256 (257)
T ss_pred CCccCHHHHHHHHHHHhCcccc------cccCcEEeecCCEeC
Confidence 7899999999999988653221 256899999887654
|
|
| >PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.1e-19 Score=172.63 Aligned_cols=219 Identities=22% Similarity=0.157 Sum_probs=157.7
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhh--cCCCeEEEEecCCCHHHHHHHhc
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEAL--RSGRAHYVSFDLRHKAQVLQALQ 82 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~Dl~d~~~l~~~~~ 82 (485)
+++|+||||||+|++|.++++.|.++| ++|.+++|++..... ..... ...++.++.+|+.|++++.++++
T Consensus 3 ~~~~~ilItGasg~iG~~l~~~l~~~g-~~v~~~~r~~~~~~~-------~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 74 (246)
T PRK05653 3 LQGKTALVTGASRGIGRAIALRLAADG-AKVVIYDSNEEAAEA-------LAAELRAAGGEARVLVFDVSDEAAVRALIE 74 (246)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCChhHHHH-------HHHHHHhcCCceEEEEccCCCHHHHHHHHH
Confidence 345799999999999999999999999 479988887532110 11111 13468889999999988877765
Q ss_pred C-------CCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHHH----hcCCCEEEEecCccccccCCCCcCC
Q 047227 83 G-------AEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDACA----ELKVKRLIYTSSPSVVFDGVHGIIN 144 (485)
Q Consensus 83 ~-------~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~~----~~~v~r~V~~SS~~vy~~~~~~~~~ 144 (485)
+ +|+|||+++... ..++....++.|+.++.++++++. +.+++++|++||.....
T Consensus 75 ~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~~ii~~ss~~~~~-------- 146 (246)
T PRK05653 75 AAVEAFGALDILVNNAGITRDALLPRMSEEDWDRVIDVNLTGTFNVVRAALPPMIKARYGRIVNISSVSGVT-------- 146 (246)
T ss_pred HHHHHhCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECcHHhcc--------
Confidence 3 699999998321 122346678999999999998885 45678999999965432
Q ss_pred CCCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCcee
Q 047227 145 GNEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVY 221 (485)
Q Consensus 145 ~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~~ 221 (485)
+..+...|+.+|...|.+.+.+++. .+++++++||+.++|+................. ...
T Consensus 147 -------~~~~~~~y~~sk~~~~~~~~~l~~~~~~~~i~~~~i~pg~~~~~~~~~~~~~~~~~~~~~~---------~~~ 210 (246)
T PRK05653 147 -------GNPGQTNYSAAKAGVIGFTKALALELASRGITVNAVAPGFIDTDMTEGLPEEVKAEILKEI---------PLG 210 (246)
T ss_pred -------CCCCCcHhHhHHHHHHHHHHHHHHHHhhcCeEEEEEEeCCcCCcchhhhhHHHHHHHHhcC---------CCC
Confidence 1245577999999999988887643 589999999999999875432222222222111 125
Q ss_pred ecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCC
Q 047227 222 DFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNME 261 (485)
Q Consensus 222 ~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~ 261 (485)
.+++++|+|+++..++..... ...|+.|+++++.
T Consensus 211 ~~~~~~dva~~~~~~~~~~~~------~~~g~~~~~~gg~ 244 (246)
T PRK05653 211 RLGQPEEVANAVAFLASDAAS------YITGQVIPVNGGM 244 (246)
T ss_pred CCcCHHHHHHHHHHHcCchhc------CccCCEEEeCCCe
Confidence 688899999999988652222 2568899998875
|
|
| >PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.7e-19 Score=171.71 Aligned_cols=220 Identities=16% Similarity=0.082 Sum_probs=151.6
Q ss_pred CCCCCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhh-cCCCeEEEEecCCCHHHHHHH
Q 047227 2 SGEENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEAL-RSGRAHYVSFDLRHKAQVLQA 80 (485)
Q Consensus 2 ~~~~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~ 80 (485)
....+++++|||||+|+||+++++.|.++| ++|.+++|.... .+ ...... ...++.++.+|++|.+++.++
T Consensus 3 ~~~~~~k~vlVtGas~gIG~~la~~l~~~G-~~v~~~~r~~~~-----~~--~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 74 (260)
T PRK12823 3 NQRFAGKVVVVTGAAQGIGRGVALRAAAEG-ARVVLVDRSELV-----HE--VAAELRAAGGEALALTADLETYAGAQAA 74 (260)
T ss_pred ccccCCCEEEEeCCCchHHHHHHHHHHHCC-CEEEEEeCchHH-----HH--HHHHHHhcCCeEEEEEEeCCCHHHHHHH
Confidence 345667899999999999999999999999 689888876321 00 011111 134577899999998877766
Q ss_pred hc-------CCCEEEEcCCCC--------CCCCchhhhHHHHHHHHHHH----HHHHHhcCCCEEEEecCccccccCCCC
Q 047227 81 LQ-------GAEVVFHMAAPN--------SSINNHKLHHSVNVEGTKNV----IDACAELKVKRLIYTSSPSVVFDGVHG 141 (485)
Q Consensus 81 ~~-------~~d~Vih~aa~~--------~~~~~~~~~~~~nv~~t~~l----l~a~~~~~v~r~V~~SS~~vy~~~~~~ 141 (485)
++ ++|++||+|+.. ....+....+++|+.++..+ +..+++.+.+++|++||...++
T Consensus 75 ~~~~~~~~~~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~----- 149 (260)
T PRK12823 75 MAAAVEAFGRIDVLINNVGGTIWAKPFEEYEEEQIEAEIRRSLFPTLWCCRAVLPHMLAQGGGAIVNVSSIATRG----- 149 (260)
T ss_pred HHHHHHHcCCCeEEEECCccccCCCChhhCChHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEcCccccC-----
Confidence 64 489999999821 12234556678888877655 4445556667999999977652
Q ss_pred cCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCC-------------CChHHHHHHH
Q 047227 142 IINGNEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDR-------------LLVPSLVAAA 205 (485)
Q Consensus 142 ~~~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~-------------~~~~~~~~~~ 205 (485)
.+..+|+.+|...|.+.+.++.+ .++++++++|+.+++|... ...+.+....
T Consensus 150 ------------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (260)
T PRK12823 150 ------------INRVPYSAAKGGVNALTASLAFEYAEHGIRVNAVAPGGTEAPPRRVPRNAAPQSEQEKAWYQQIVDQT 217 (260)
T ss_pred ------------CCCCccHHHHHHHHHHHHHHHHHhcccCcEEEEEecCccCCcchhhHHhhccccccccccHHHHHHHH
Confidence 12346999999999999988654 4899999999999987310 1122333333
Q ss_pred HcCCCeEEecCCCceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCC
Q 047227 206 RAGKSKFIIGDGNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNME 261 (485)
Q Consensus 206 ~~g~~~~~~g~g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~ 261 (485)
..+.+. .-+.+++|+|++++.++... .....|+.+++.+++
T Consensus 218 ~~~~~~---------~~~~~~~dva~~~~~l~s~~------~~~~~g~~~~v~gg~ 258 (260)
T PRK12823 218 LDSSLM---------KRYGTIDEQVAAILFLASDE------ASYITGTVLPVGGGD 258 (260)
T ss_pred hccCCc---------ccCCCHHHHHHHHHHHcCcc------cccccCcEEeecCCC
Confidence 333222 23457899999998876421 112568899997754
|
|
| >PRK12829 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.7e-20 Score=177.95 Aligned_cols=229 Identities=18% Similarity=0.133 Sum_probs=155.8
Q ss_pred CCCCCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHh
Q 047227 2 SGEENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQAL 81 (485)
Q Consensus 2 ~~~~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~ 81 (485)
....+++++|||||+|+||++++++|+++| ++|.+++|...... . +.......++.++.+|+.|++++.+++
T Consensus 6 ~~~~~~~~vlItGa~g~iG~~~a~~L~~~g-~~V~~~~r~~~~~~----~---~~~~~~~~~~~~~~~D~~~~~~~~~~~ 77 (264)
T PRK12829 6 LKPLDGLRVLVTGGASGIGRAIAEAFAEAG-ARVHVCDVSEAALA----A---TAARLPGAKVTATVADVADPAQVERVF 77 (264)
T ss_pred hhccCCCEEEEeCCCCcHHHHHHHHHHHCC-CEEEEEeCCHHHHH----H---HHHHHhcCceEEEEccCCCHHHHHHHH
Confidence 334567899999999999999999999999 58999988643111 0 111122225788999999999887776
Q ss_pred c-------CCCEEEEcCCCC-C-------CCCchhhhHHHHHHHHHHHHHHHH----hcCC-CEEEEecCccccccCCCC
Q 047227 82 Q-------GAEVVFHMAAPN-S-------SINNHKLHHSVNVEGTKNVIDACA----ELKV-KRLIYTSSPSVVFDGVHG 141 (485)
Q Consensus 82 ~-------~~d~Vih~aa~~-~-------~~~~~~~~~~~nv~~t~~ll~a~~----~~~v-~r~V~~SS~~vy~~~~~~ 141 (485)
+ ++|+|||+++.. . ..+++...+++|+.++.++++++. ..+. ++++++||...+.
T Consensus 78 ~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~vv~~ss~~~~~----- 152 (264)
T PRK12829 78 DTAVERFGGLDVLVNNAGIAGPTGGIDEITPEQWEQTLAVNLNGQFYFARAAVPLLKASGHGGVIIALSSVAGRL----- 152 (264)
T ss_pred HHHHHHhCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCeEEEEeccccccc-----
Confidence 4 589999999943 1 123457789999999999988874 3344 6788888754321
Q ss_pred cCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEe----
Q 047227 142 IINGNEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFII---- 214 (485)
Q Consensus 142 ~~~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~---- 214 (485)
+..+...|+.+|...|.+++.++.. .+++++++||++++||......+...... +......
T Consensus 153 ----------~~~~~~~y~~~K~a~~~~~~~l~~~~~~~~i~~~~l~pg~v~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 220 (264)
T PRK12829 153 ----------GYPGRTPYAASKWAVVGLVKSLAIELGPLGIRVNAILPGIVRGPRMRRVIEARAQQL--GIGLDEMEQEY 220 (264)
T ss_pred ----------CCCCCchhHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcCChHHHHHhhhhhhcc--CCChhHHHHHH
Confidence 1223457999999999999887653 48999999999999986432222111100 0000000
Q ss_pred cCCCceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCC
Q 047227 215 GDGNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNME 261 (485)
Q Consensus 215 g~g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~ 261 (485)
........+++++|+|+++..++... .....|+.|+++++.
T Consensus 221 ~~~~~~~~~~~~~d~a~~~~~l~~~~------~~~~~g~~~~i~~g~ 261 (264)
T PRK12829 221 LEKISLGRMVEPEDIAATALFLASPA------ARYITGQAISVDGNV 261 (264)
T ss_pred HhcCCCCCCCCHHHHHHHHHHHcCcc------ccCccCcEEEeCCCc
Confidence 00112345899999999988775421 122568899998874
|
|
| >PRK12828 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1e-19 Score=172.05 Aligned_cols=216 Identities=16% Similarity=0.105 Sum_probs=156.4
Q ss_pred CCCCCCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHH
Q 047227 1 MSGEENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQA 80 (485)
Q Consensus 1 M~~~~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~ 80 (485)
|....+++++|||||+|+||+++++.|+++| ++|++++|......+ ....+...+++.+.+|+.|.+++.++
T Consensus 1 ~~~~~~~k~vlItGatg~iG~~la~~l~~~G-~~v~~~~r~~~~~~~-------~~~~~~~~~~~~~~~D~~~~~~~~~~ 72 (239)
T PRK12828 1 MEHSLQGKVVAITGGFGGLGRATAAWLAARG-ARVALIGRGAAPLSQ-------TLPGVPADALRIGGIDLVDPQAARRA 72 (239)
T ss_pred CCCCCCCCEEEEECCCCcHhHHHHHHHHHCC-CeEEEEeCChHhHHH-------HHHHHhhcCceEEEeecCCHHHHHHH
Confidence 4444567899999999999999999999999 689999986532111 11112234678889999999888777
Q ss_pred hc-------CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHHH----hcCCCEEEEecCccccccCCCCc
Q 047227 81 LQ-------GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDACA----ELKVKRLIYTSSPSVVFDGVHGI 142 (485)
Q Consensus 81 ~~-------~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~~----~~~v~r~V~~SS~~vy~~~~~~~ 142 (485)
++ ++|+|||+++... ..+++...+++|+.++.++++++. +.+++++|++||...+..
T Consensus 73 ~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~----- 147 (239)
T PRK12828 73 VDEVNRQFGRLDALVNIAGAFVWGTIADGDADTWDRMYGVNVKTTLNASKAALPALTASGGGRIVNIGAGAALKA----- 147 (239)
T ss_pred HHHHHHHhCCcCEEEECCcccCcCChhhCCHHHHHHHHHhhchhHHHHHHHHHHHHHhcCCCEEEEECchHhccC-----
Confidence 65 5899999998321 122345668899999999988875 456889999999877642
Q ss_pred CCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCc
Q 047227 143 INGNEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNN 219 (485)
Q Consensus 143 ~~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~ 219 (485)
..+...|+.+|...+.+++.++.. .++++.++||+.++++..... .+ ...
T Consensus 148 ----------~~~~~~y~~sk~a~~~~~~~~a~~~~~~~i~~~~i~pg~v~~~~~~~~-----------~~------~~~ 200 (239)
T PRK12828 148 ----------GPGMGAYAAAKAGVARLTEALAAELLDRGITVNAVLPSIIDTPPNRAD-----------MP------DAD 200 (239)
T ss_pred ----------CCCcchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCcccCcchhhc-----------CC------chh
Confidence 134567999999999888776543 589999999999998832110 00 011
Q ss_pred eeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCCC
Q 047227 220 VYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMES 262 (485)
Q Consensus 220 ~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~ 262 (485)
...|++++|+|+++..++..... ...|+.+++.+++.
T Consensus 201 ~~~~~~~~dva~~~~~~l~~~~~------~~~g~~~~~~g~~~ 237 (239)
T PRK12828 201 FSRWVTPEQIAAVIAFLLSDEAQ------AITGASIPVDGGVA 237 (239)
T ss_pred hhcCCCHHHHHHHHHHHhCcccc------cccceEEEecCCEe
Confidence 23489999999999888763211 24688888887654
|
|
| >PRK07074 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.1e-19 Score=174.18 Aligned_cols=229 Identities=17% Similarity=0.142 Sum_probs=163.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc----
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ---- 82 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~---- 82 (485)
++++|||||+|+||.++++.|.++| ++|++++|+...... +...+...++..+.+|+.|.+++.++++
T Consensus 2 ~k~ilItGat~~iG~~la~~L~~~g-~~v~~~~r~~~~~~~-------~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 73 (257)
T PRK07074 2 KRTALVTGAAGGIGQALARRFLAAG-DRVLALDIDAAALAA-------FADALGDARFVPVACDLTDAASLAAALANAAA 73 (257)
T ss_pred CCEEEEECCcchHHHHHHHHHHHCC-CEEEEEeCCHHHHHH-------HHHHhcCCceEEEEecCCCHHHHHHHHHHHHH
Confidence 4689999999999999999999999 589999886432100 1111223468899999999998877765
Q ss_pred ---CCCEEEEcCCCCCC-------CCchhhhHHHHHHHHHHHHHHHH----hcCCCEEEEecCccccccCCCCcCCCCCC
Q 047227 83 ---GAEVVFHMAAPNSS-------INNHKLHHSVNVEGTKNVIDACA----ELKVKRLIYTSSPSVVFDGVHGIINGNEA 148 (485)
Q Consensus 83 ---~~d~Vih~aa~~~~-------~~~~~~~~~~nv~~t~~ll~a~~----~~~v~r~V~~SS~~vy~~~~~~~~~~~e~ 148 (485)
++|+|||+++.... .......+++|+.++.++++++. +.+.+++|++||...+.
T Consensus 74 ~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~------------ 141 (257)
T PRK07074 74 ERGPVDVLVANAGAARAASLHDTTPASWRADNALNLEAAYLCVEAVLEGMLKRSRGAVVNIGSVNGMA------------ 141 (257)
T ss_pred HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEEcchhhcC------------
Confidence 48999999993211 11234456799999999988873 34567899999954321
Q ss_pred CCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCC---hHHHHHHHHcCCCeEEecCCCceee
Q 047227 149 LPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLL---VPSLVAAARAGKSKFIIGDGNNVYD 222 (485)
Q Consensus 149 ~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~---~~~~~~~~~~g~~~~~~g~g~~~~~ 222 (485)
......|+.+|...|.+++.++.+ +++++.++||+.++++..... .+.+...... .....+
T Consensus 142 ----~~~~~~y~~sK~a~~~~~~~~a~~~~~~gi~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~---------~~~~~~ 208 (257)
T PRK07074 142 ----ALGHPAYSAAKAGLIHYTKLLAVEYGRFGIRANAVAPGTVKTQAWEARVAANPQVFEELKK---------WYPLQD 208 (257)
T ss_pred ----CCCCcccHHHHHHHHHHHHHHHHHHhHhCeEEEEEEeCcCCcchhhcccccChHHHHHHHh---------cCCCCC
Confidence 011236999999999999888754 479999999999988753211 1222222211 123467
Q ss_pred cccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCCCccHHHHHHHHHH
Q 047227 223 FTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILE 274 (485)
Q Consensus 223 ~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~~t~~el~~~i~~ 274 (485)
|++++|++++++.++.... ....|+.+++.++......|+.+.+.+
T Consensus 209 ~~~~~d~a~~~~~l~~~~~------~~~~g~~~~~~~g~~~~~~~~~~~~~~ 254 (257)
T PRK07074 209 FATPDDVANAVLFLASPAA------RAITGVCLPVDGGLTAGNREMARTLTL 254 (257)
T ss_pred CCCHHHHHHHHHHHcCchh------cCcCCcEEEeCCCcCcCChhhhhhhcc
Confidence 9999999999999875211 225688999998888889998876643
|
|
| >PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.2e-19 Score=171.74 Aligned_cols=219 Identities=17% Similarity=0.147 Sum_probs=156.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhh--cCCCeEEEEecCCCHHHHHHHhc---
Q 047227 8 RLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEAL--RSGRAHYVSFDLRHKAQVLQALQ--- 82 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~Dl~d~~~l~~~~~--- 82 (485)
|++|||||+|+||+++++.|.++| ++|.+++|....... . ....+ ...++.++.+|++|++++.++++
T Consensus 3 k~vlItG~sg~iG~~la~~L~~~g-~~vi~~~r~~~~~~~---~---~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 75 (256)
T PRK12745 3 PVALVTGGRRGIGLGIARALAAAG-FDLAINDRPDDEELA---A---TQQELRALGVEVIFFPADVADLSAHEAMLDAAQ 75 (256)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCC-CEEEEEecCchhHHH---H---HHHHHHhcCCceEEEEecCCCHHHHHHHHHHHH
Confidence 689999999999999999999999 688888876431100 0 11111 13468899999999988777654
Q ss_pred ----CCCEEEEcCCCCC---------CCCchhhhHHHHHHHHHHHHHHHHhc-----C-----CCEEEEecCccccccCC
Q 047227 83 ----GAEVVFHMAAPNS---------SINNHKLHHSVNVEGTKNVIDACAEL-----K-----VKRLIYTSSPSVVFDGV 139 (485)
Q Consensus 83 ----~~d~Vih~aa~~~---------~~~~~~~~~~~nv~~t~~ll~a~~~~-----~-----v~r~V~~SS~~vy~~~~ 139 (485)
.+|+|||+++... ...++...+++|+.++.++++++.+. + ++++|++||...+.
T Consensus 76 ~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~--- 152 (256)
T PRK12745 76 AAWGRIDCLVNNAGVGVKVRGDLLDLTPESFDRVLAINLRGPFFLTQAVAKRMLAQPEPEELPHRSIVFVSSVNAIM--- 152 (256)
T ss_pred HhcCCCCEEEECCccCCCCCCChhhCCHHHHHHHHHhcchHHHHHHHHHHHHHHhccCcCCCCCcEEEEECChhhcc---
Confidence 4899999998421 12345667899999999998887543 1 56799999977653
Q ss_pred CCcCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecC
Q 047227 140 HGIINGNEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGD 216 (485)
Q Consensus 140 ~~~~~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~ 216 (485)
+..+.+.|+.+|...|.+++.++.+ ++++++++||+.+.++........+......+. .
T Consensus 153 ------------~~~~~~~Y~~sK~a~~~~~~~l~~~~~~~gi~v~~i~pg~v~t~~~~~~~~~~~~~~~~~~-~----- 214 (256)
T PRK12745 153 ------------VSPNRGEYCISKAGLSMAAQLFAARLAEEGIGVYEVRPGLIKTDMTAPVTAKYDALIAKGL-V----- 214 (256)
T ss_pred ------------CCCCCcccHHHHHHHHHHHHHHHHHHHHhCCEEEEEecCCCcCccccccchhHHhhhhhcC-C-----
Confidence 1234568999999999999988753 689999999999998754433233322222221 1
Q ss_pred CCceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCCC
Q 047227 217 GNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMES 262 (485)
Q Consensus 217 g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~ 262 (485)
....+.+++|+++++..++... .+...|+.|++.++..
T Consensus 215 --~~~~~~~~~d~a~~i~~l~~~~------~~~~~G~~~~i~gg~~ 252 (256)
T PRK12745 215 --PMPRWGEPEDVARAVAALASGD------LPYSTGQAIHVDGGLS 252 (256)
T ss_pred --CcCCCcCHHHHHHHHHHHhCCc------ccccCCCEEEECCCee
Confidence 2245779999999998876521 1225688999987643
|
|
| >PRK07774 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.6e-19 Score=170.62 Aligned_cols=217 Identities=20% Similarity=0.197 Sum_probs=157.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhh--cCCCeEEEEecCCCHHHHHHHhc-
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEAL--RSGRAHYVSFDLRHKAQVLQALQ- 82 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~Dl~d~~~l~~~~~- 82 (485)
++|++|||||+|+||.+++++|+++| ++|++++|....... ..+.+ ...++..+.+|++|.+++.++++
T Consensus 5 ~~k~vlItGasg~iG~~la~~l~~~g-~~vi~~~r~~~~~~~-------~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 76 (250)
T PRK07774 5 DDKVAIVTGAAGGIGQAYAEALAREG-ASVVVADINAEGAER-------VAKQIVADGGTAIAVQVDVSDPDSAKAMADA 76 (250)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEeCCHHHHHH-------HHHHHHhcCCcEEEEEcCCCCHHHHHHHHHH
Confidence 56899999999999999999999999 589999886431111 11111 12367788999999998877664
Q ss_pred ------CCCEEEEcCCCCC----------CCCchhhhHHHHHHHHHHHHHHHHhc----CCCEEEEecCccccccCCCCc
Q 047227 83 ------GAEVVFHMAAPNS----------SINNHKLHHSVNVEGTKNVIDACAEL----KVKRLIYTSSPSVVFDGVHGI 142 (485)
Q Consensus 83 ------~~d~Vih~aa~~~----------~~~~~~~~~~~nv~~t~~ll~a~~~~----~v~r~V~~SS~~vy~~~~~~~ 142 (485)
++|+|||+|+... +..+++..+++|+.++.++++++... +.+++|++||...|.
T Consensus 77 ~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~------ 150 (250)
T PRK07774 77 TVSAFGGIDYLVNNAAIYGGMKLDLLITVPWDYYKKFMSVNLDGALVCTRAVYKHMAKRGGGAIVNQSSTAAWL------ 150 (250)
T ss_pred HHHHhCCCCEEEECCCCcCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCcEEEEEecccccC------
Confidence 4899999999421 12345567899999999999988754 356999999987652
Q ss_pred CCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCC-hHHHHHHHHcCCCeEEecCCC
Q 047227 143 INGNEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLL-VPSLVAAARAGKSKFIIGDGN 218 (485)
Q Consensus 143 ~~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~-~~~~~~~~~~g~~~~~~g~g~ 218 (485)
+.+.|+.+|...|.+++.++.+ .++++++++|+.+..+..... ...+...+.++.+..
T Consensus 151 ------------~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~~~~------ 212 (250)
T PRK07774 151 ------------YSNFYGLAKVGLNGLTQQLARELGGMNIRVNAIAPGPIDTEATRTVTPKEFVADMVKGIPLS------ 212 (250)
T ss_pred ------------CccccHHHHHHHHHHHHHHHHHhCccCeEEEEEecCcccCccccccCCHHHHHHHHhcCCCC------
Confidence 3467999999999999888754 479999999999887764422 223344444443321
Q ss_pred ceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCCCc
Q 047227 219 NVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMESI 263 (485)
Q Consensus 219 ~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~~ 263 (485)
.+.+++|+|++++.++..... ...|+.||+.+++.+
T Consensus 213 ---~~~~~~d~a~~~~~~~~~~~~------~~~g~~~~v~~g~~~ 248 (250)
T PRK07774 213 ---RMGTPEDLVGMCLFLLSDEAS------WITGQIFNVDGGQII 248 (250)
T ss_pred ---CCcCHHHHHHHHHHHhChhhh------CcCCCEEEECCCeec
Confidence 245689999999888653211 146889999987654
|
|
| >PRK07806 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.7e-19 Score=171.77 Aligned_cols=227 Identities=16% Similarity=0.138 Sum_probs=155.5
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhc--CCCeEEEEecCCCHHHHHHHhc
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALR--SGRAHYVSFDLRHKAQVLQALQ 82 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~Dl~d~~~l~~~~~ 82 (485)
++++++|||||+|+||+++++.|+++| ++|++++|...... +. +...+. ..++.++.+|++|++++.++++
T Consensus 4 ~~~k~vlItGasggiG~~l~~~l~~~G-~~V~~~~r~~~~~~---~~---~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~ 76 (248)
T PRK07806 4 LPGKTALVTGSSRGIGADTAKILAGAG-AHVVVNYRQKAPRA---NK---VVAEIEAAGGRASAVGADLTDEESVAALMD 76 (248)
T ss_pred CCCcEEEEECCCCcHHHHHHHHHHHCC-CEEEEEeCCchHhH---HH---HHHHHHhcCCceEEEEcCCCCHHHHHHHHH
Confidence 456899999999999999999999999 58888877542110 00 111111 3467889999999998877764
Q ss_pred -------CCCEEEEcCCCC-CCCCchhhhHHHHHHHHHHHHHHHHhcC--CCEEEEecCccccccCCCCcCCCCCCCCCC
Q 047227 83 -------GAEVVFHMAAPN-SSINNHKLHHSVNVEGTKNVIDACAELK--VKRLIYTSSPSVVFDGVHGIINGNEALPYP 152 (485)
Q Consensus 83 -------~~d~Vih~aa~~-~~~~~~~~~~~~nv~~t~~ll~a~~~~~--v~r~V~~SS~~vy~~~~~~~~~~~e~~~~~ 152 (485)
++|+|||+|+.. ....++...+++|+.++.++++++.+.- ..++|++||...... +..+.
T Consensus 77 ~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~isS~~~~~~------~~~~~---- 146 (248)
T PRK07806 77 TAREEFGGLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFVTSHQAHFI------PTVKT---- 146 (248)
T ss_pred HHHHhCCCCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEEeCchhhcC------ccccC----
Confidence 489999999832 2233566778999999999999998752 358999999544311 11111
Q ss_pred CCCCchHHHHHHHHHHHHHHHhC---CCCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCceeecccHHHH
Q 047227 153 PKHNDFYSATKAEGEALVIKANG---TNGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANV 229 (485)
Q Consensus 153 ~~~~~~Y~~sK~~~E~~~~~~~~---~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~D~ 229 (485)
....+.|+.+|..+|.+++.++. ..++++++++|+.+-++-.. .+.. ...+-.+.........+++++|+
T Consensus 147 ~~~~~~Y~~sK~a~e~~~~~l~~~~~~~~i~v~~v~pg~~~~~~~~----~~~~---~~~~~~~~~~~~~~~~~~~~~dv 219 (248)
T PRK07806 147 MPEYEPVARSKRAGEDALRALRPELAEKGIGFVVVSGDMIEGTVTA----TLLN---RLNPGAIEARREAAGKLYTVSEF 219 (248)
T ss_pred CccccHHHHHHHHHHHHHHHHHHHhhccCeEEEEeCCccccCchhh----hhhc---cCCHHHHHHHHhhhcccCCHHHH
Confidence 12256899999999999988754 35799999999887665311 1110 00000000000112369999999
Q ss_pred HHHHHHHHHHhccccchhhccCCcEEEeeCCCCc
Q 047227 230 AHAHICAERALASEVTVAEKAAGQAYFVTNMESI 263 (485)
Q Consensus 230 a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~~ 263 (485)
|++++.+++. ....|++|++++++..
T Consensus 220 a~~~~~l~~~--------~~~~g~~~~i~~~~~~ 245 (248)
T PRK07806 220 AAEVARAVTA--------PVPSGHIEYVGGADYF 245 (248)
T ss_pred HHHHHHHhhc--------cccCccEEEecCccce
Confidence 9999998872 3357899999998643
|
|
| >PRK06194 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=9.2e-19 Score=170.53 Aligned_cols=220 Identities=13% Similarity=0.121 Sum_probs=158.0
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhh-cCCCeEEEEecCCCHHHHHHHhc-
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEAL-RSGRAHYVSFDLRHKAQVLQALQ- 82 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~- 82 (485)
+.++++|||||+|+||+++++.|+++| ++|++++|....... ...... ...++.++.+|++|.+++.++++
T Consensus 4 ~~~k~vlVtGasggIG~~la~~l~~~G-~~V~~~~r~~~~~~~------~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~ 76 (287)
T PRK06194 4 FAGKVAVITGAASGFGLAFARIGAALG-MKLVLADVQQDALDR------AVAELRAQGAEVLGVRTDVSDAAQVEALADA 76 (287)
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHCC-CEEEEEeCChHHHHH------HHHHHHhcCCeEEEEECCCCCHHHHHHHHHH
Confidence 456899999999999999999999999 689999886431110 011111 13467889999999999888775
Q ss_pred ------CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHH----HHhcCC------CEEEEecCccccccCC
Q 047227 83 ------GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDA----CAELKV------KRLIYTSSPSVVFDGV 139 (485)
Q Consensus 83 ------~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a----~~~~~v------~r~V~~SS~~vy~~~~ 139 (485)
++|+|||+||... ..+++...+++|+.++.++.++ +.+.+. .++|++||...+..
T Consensus 77 ~~~~~g~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~-- 154 (287)
T PRK06194 77 ALERFGAVHLLFNNAGVGAGGLVWENSLADWEWVLGVNLWGVIHGVRAFTPLMLAAAEKDPAYEGHIVNTASMAGLLA-- 154 (287)
T ss_pred HHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEeCChhhccC--
Confidence 3799999999322 2234566789999999997776 444433 58999999877641
Q ss_pred CCcCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhCCC-----CceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEe
Q 047227 140 HGIINGNEALPYPPKHNDFYSATKAEGEALVIKANGTN-----GLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFII 214 (485)
Q Consensus 140 ~~~~~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~-----g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~ 214 (485)
..+...|+.+|...|.+++.++.+. ++++..+.|+.+..+ +.....+++..+.
T Consensus 155 -------------~~~~~~Y~~sK~a~~~~~~~l~~e~~~~~~~irv~~v~pg~i~t~---------~~~~~~~~~~~~~ 212 (287)
T PRK06194 155 -------------PPAMGIYNVSKHAVVSLTETLYQDLSLVTDQVGASVLCPYFVPTG---------IWQSERNRPADLA 212 (287)
T ss_pred -------------CCCCcchHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEEeCcccCc---------cccccccCchhcc
Confidence 1344679999999999998876543 466667777655433 1122335566777
Q ss_pred cCCCceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCCCccHHHHHHHHHHHcCCC
Q 047227 215 GDGNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQ 279 (485)
Q Consensus 215 g~g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~~t~~el~~~i~~~~g~~ 279 (485)
+++.+.++|++++|.+.+.... + .++..|+++.+.+.++..
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~---------------~---------~~s~~dva~~i~~~~~~~ 253 (287)
T PRK06194 213 NTAPPTRSQLIAQAMSQKAVGS---------------G---------KVTAEEVAQLVFDAIRAG 253 (287)
T ss_pred cCccccchhhHHHHHHHhhhhc---------------c---------CCCHHHHHHHHHHHHHcC
Confidence 8888999999999998865321 1 168999999998877544
|
|
| >PRK07523 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.3e-19 Score=169.15 Aligned_cols=222 Identities=18% Similarity=0.152 Sum_probs=157.9
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhc--CCCeEEEEecCCCHHHHHHHhc
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALR--SGRAHYVSFDLRHKAQVLQALQ 82 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~Dl~d~~~l~~~~~ 82 (485)
..++++|||||+|+||++++++|+++| ++|.+.+|....... ....+. ..++.++.+|+.|.+++.++++
T Consensus 8 ~~~k~vlItGa~g~iG~~ia~~l~~~G-~~V~~~~r~~~~~~~-------~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~ 79 (255)
T PRK07523 8 LTGRRALVTGSSQGIGYALAEGLAQAG-AEVILNGRDPAKLAA-------AAESLKGQGLSAHALAFDVTDHDAVRAAID 79 (255)
T ss_pred CCCCEEEEECCcchHHHHHHHHHHHcC-CEEEEEeCCHHHHHH-------HHHHHHhcCceEEEEEccCCCHHHHHHHHH
Confidence 356899999999999999999999999 689998886431110 111111 2357889999999998888775
Q ss_pred -------CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHHHhc----CCCEEEEecCccccccCCCCcCC
Q 047227 83 -------GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDACAEL----KVKRLIYTSSPSVVFDGVHGIIN 144 (485)
Q Consensus 83 -------~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~~~~----~v~r~V~~SS~~vy~~~~~~~~~ 144 (485)
..|+|||+++... ..++.+..+++|+.++.++++++.+. +.+++|++||.....
T Consensus 80 ~~~~~~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~iss~~~~~-------- 151 (255)
T PRK07523 80 AFEAEIGPIDILVNNAGMQFRTPLEDFPADAFERLLRTNISSVFYVGQAVARHMIARGAGKIINIASVQSAL-------- 151 (255)
T ss_pred HHHHhcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCeEEEEEccchhcc--------
Confidence 3799999999321 12234667889999999999988754 567999999965431
Q ss_pred CCCCCCCCCCCCchHHHHHHHHHHHHHHHhC---CCCceEEEEecCCcccCCCCCCh--HHHHHHHHcCCCeEEecCCCc
Q 047227 145 GNEALPYPPKHNDFYSATKAEGEALVIKANG---TNGLLTCCIRPSSIFGPGDRLLV--PSLVAAARAGKSKFIIGDGNN 219 (485)
Q Consensus 145 ~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~---~~g~~~~ilRp~~v~Gp~~~~~~--~~~~~~~~~g~~~~~~g~g~~ 219 (485)
+..+...|+.+|...|.+.+.++. .+|+++.++||+.+.++...... +.+...+.... .
T Consensus 152 -------~~~~~~~y~~sK~a~~~~~~~~a~e~~~~gi~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~---------~ 215 (255)
T PRK07523 152 -------ARPGIAPYTATKGAVGNLTKGMATDWAKHGLQCNAIAPGYFDTPLNAALVADPEFSAWLEKRT---------P 215 (255)
T ss_pred -------CCCCCccHHHHHHHHHHHHHHHHHHhhHhCeEEEEEEECcccCchhhhhccCHHHHHHHHhcC---------C
Confidence 123567899999999999988764 46899999999999988532111 22222222222 1
Q ss_pred eeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCCCcc
Q 047227 220 VYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMESIK 264 (485)
Q Consensus 220 ~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~~t 264 (485)
...+..++|+|++++.++.... ....|+.+++.++..++
T Consensus 216 ~~~~~~~~dva~~~~~l~~~~~------~~~~G~~i~~~gg~~~~ 254 (255)
T PRK07523 216 AGRWGKVEELVGACVFLASDAS------SFVNGHVLYVDGGITAS 254 (255)
T ss_pred CCCCcCHHHHHHHHHHHcCchh------cCccCcEEEECCCeecc
Confidence 2347789999999998865211 22568899998875443
|
|
| >PRK05876 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.1e-19 Score=171.14 Aligned_cols=234 Identities=18% Similarity=0.077 Sum_probs=156.2
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhc--CCCeEEEEecCCCHHHHHHHhc
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALR--SGRAHYVSFDLRHKAQVLQALQ 82 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~Dl~d~~~l~~~~~ 82 (485)
++++++|||||+|+||+++++.|.++| ++|.+.+|...... + ....+. ..++.++.+|++|.+++.++++
T Consensus 4 ~~~k~vlVTGas~gIG~ala~~La~~G-~~Vv~~~r~~~~l~----~---~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~ 75 (275)
T PRK05876 4 FPGRGAVITGGASGIGLATGTEFARRG-ARVVLGDVDKPGLR----Q---AVNHLRAEGFDVHGVMCDVRHREEVTHLAD 75 (275)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCC-CEEEEEeCCHHHHH----H---HHHHHHhcCCeEEEEeCCCCCHHHHHHHHH
Confidence 567899999999999999999999999 68988887643211 0 111111 2357889999999998887764
Q ss_pred -------CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHHH----hcC-CCEEEEecCccccccCCCCcC
Q 047227 83 -------GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDACA----ELK-VKRLIYTSSPSVVFDGVHGII 143 (485)
Q Consensus 83 -------~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~~----~~~-v~r~V~~SS~~vy~~~~~~~~ 143 (485)
++|+|||+||... ..++++..+++|+.++.++.+++. +.+ .+++|++||...+.
T Consensus 76 ~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~p~m~~~~~~g~iv~isS~~~~~------- 148 (275)
T PRK05876 76 EAFRLLGHVDVVFSNAGIVVGGPIVEMTHDDWRWVIDVDLWGSIHTVEAFLPRLLEQGTGGHVVFTASFAGLV------- 148 (275)
T ss_pred HHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCEEEEeCChhhcc-------
Confidence 3799999999321 223456678999999999988875 344 46899999977653
Q ss_pred CCCCCCCCCCCCCchHHHHHHHHHHHHHHHhC---CCCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCce
Q 047227 144 NGNEALPYPPKHNDFYSATKAEGEALVIKANG---TNGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNV 220 (485)
Q Consensus 144 ~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~---~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~ 220 (485)
+..+...|+.+|...+.+.+.++. ..|+++++++|+.+.++......................+.....
T Consensus 149 --------~~~~~~~Y~asK~a~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (275)
T PRK05876 149 --------PNAGLGAYGVAKYGVVGLAETLAREVTADGIGVSVLCPMVVETNLVANSERIRGAACAQSSTTGSPGPLPLQ 220 (275)
T ss_pred --------CCCCCchHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEeCccccccccchhhhcCcccccccccccccccccc
Confidence 234567899999975554444432 358999999999998774322100000000111112233444456
Q ss_pred eecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCCCccHHHHHHHHHHH
Q 047227 221 YDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEG 275 (485)
Q Consensus 221 ~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~~t~~el~~~i~~~ 275 (485)
+++++++|+|++++.++.+ ++.|.+.+ +....++.+...+.
T Consensus 221 ~~~~~~~dva~~~~~ai~~------------~~~~~~~~--~~~~~~~~~~~~~~ 261 (275)
T PRK05876 221 DDNLGVDDIAQLTADAILA------------NRLYVLPH--AASRASIRRRFERI 261 (275)
T ss_pred ccCCCHHHHHHHHHHHHHc------------CCeEEecC--hhhHHHHHHHHHHH
Confidence 7899999999999988762 34565553 33445555544443
|
|
| >PRK06914 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.9e-19 Score=172.52 Aligned_cols=224 Identities=13% Similarity=0.054 Sum_probs=151.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc----
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ---- 82 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~---- 82 (485)
++++|||||+|++|+++++.|+++| ++|++++|........... ........+++++.+|++|++++.+ ++
T Consensus 3 ~k~~lItGasg~iG~~la~~l~~~G-~~V~~~~r~~~~~~~~~~~---~~~~~~~~~~~~~~~D~~d~~~~~~-~~~~~~ 77 (280)
T PRK06914 3 KKIAIVTGASSGFGLLTTLELAKKG-YLVIATMRNPEKQENLLSQ---ATQLNLQQNIKVQQLDVTDQNSIHN-FQLVLK 77 (280)
T ss_pred CCEEEEECCCchHHHHHHHHHHhCC-CEEEEEeCCHHHHHHHHHH---HHhcCCCCceeEEecCCCCHHHHHH-HHHHHH
Confidence 4689999999999999999999999 6898888764321110000 0111112468899999999988765 32
Q ss_pred ---CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHH----HhcCCCEEEEecCccccccCCCCcCCCCCC
Q 047227 83 ---GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDAC----AELKVKRLIYTSSPSVVFDGVHGIINGNEA 148 (485)
Q Consensus 83 ---~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~----~~~~v~r~V~~SS~~vy~~~~~~~~~~~e~ 148 (485)
++|+|||+++... ..+++...+++|+.++.++++++ ++.+.+++|++||...+.
T Consensus 78 ~~~~id~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~vsS~~~~~------------ 145 (280)
T PRK06914 78 EIGRIDLLVNNAGYANGGFVEEIPVEEYRKQFETNVFGAISVTQAVLPYMRKQKSGKIINISSISGRV------------ 145 (280)
T ss_pred hcCCeeEEEECCcccccCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEECcccccC------------
Confidence 4799999999322 12345567889999998888885 566678999999965442
Q ss_pred CCCCCCCCchHHHHHHHHHHHHHHHh---CCCCceEEEEecCCcccCCCCCC-------------hHHHHHHHHcCCCeE
Q 047227 149 LPYPPKHNDFYSATKAEGEALVIKAN---GTNGLLTCCIRPSSIFGPGDRLL-------------VPSLVAAARAGKSKF 212 (485)
Q Consensus 149 ~~~~~~~~~~Y~~sK~~~E~~~~~~~---~~~g~~~~ilRp~~v~Gp~~~~~-------------~~~~~~~~~~g~~~~ 212 (485)
+..+...|+.+|...|.+++.++ ..++++++++|||.++++..... ............
T Consensus 146 ---~~~~~~~Y~~sK~~~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 219 (280)
T PRK06914 146 ---GFPGLSPYVSSKYALEGFSESLRLELKPFGIDVALIEPGSYNTNIWEVGKQLAENQSETTSPYKEYMKKIQKHI--- 219 (280)
T ss_pred ---CCCCCchhHHhHHHHHHHHHHHHHHhhhhCCEEEEEecCCcccchhhccccccccccccccchHHHHHHHHHHH---
Confidence 12356789999999999988876 34689999999999988732110 011111111000
Q ss_pred EecCCCceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCCCccHH
Q 047227 213 IIGDGNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMESIKFW 266 (485)
Q Consensus 213 ~~g~g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~~t~~ 266 (485)
......+++++|+|++++.+++. . ..+..|+++++..+++.
T Consensus 220 ----~~~~~~~~~~~dva~~~~~~~~~--------~-~~~~~~~~~~~~~~~~~ 260 (280)
T PRK06914 220 ----NSGSDTFGNPIDVANLIVEIAES--------K-RPKLRYPIGKGVKLMIL 260 (280)
T ss_pred ----hhhhhccCCHHHHHHHHHHHHcC--------C-CCCcccccCCchHHHHH
Confidence 01224578899999999998763 1 12346888876554433
|
|
| >KOG1221 consensus Acyl-CoA reductase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.9e-19 Score=176.49 Aligned_cols=265 Identities=20% Similarity=0.234 Sum_probs=185.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcC--CceEEEeecCCccccCCccc-h-----hhhhhhhc-----CCCeEEEEecCC
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYD--MFSVRIADLSDSIALEPHEE-Q-----GILGEALR-----SGRAHYVSFDLR 72 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G--~~~V~~~~r~~~~~~~~~~~-~-----~~~~~~~~-----~~~v~~~~~Dl~ 72 (485)
.+++|+|||||||+|..+++.|++.- -.+++++-|.+.-. +..+. . .++....+ ..++..+.||+.
T Consensus 11 ~~k~i~vTG~tGFlgKVliEklLr~~p~v~~IYlLiR~k~g~-~~~~Rl~~~~~~~lF~~l~~~~p~~l~Kv~pi~GDi~ 89 (467)
T KOG1221|consen 11 KNKTIFVTGATGFLGKVLIEKLLRTTPDVKRIYLLIRAKKGK-AAQERLRTELKDPLFEVLKEKKPEALEKVVPIAGDIS 89 (467)
T ss_pred CCCeEEEEcccchhHHHHHHHHHhcCcCcceEEEEEecCCCC-CHHHHHHHHHhhhHHHHHHhhCccceecceecccccc
Confidence 57899999999999999999999863 12677776664421 11111 1 11122222 257888999998
Q ss_pred CH------HHHHHHhcCCCEEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcC-CCEEEEecCccccccC---CCCc
Q 047227 73 HK------AQVLQALQGAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELK-VKRLIYTSSPSVVFDG---VHGI 142 (485)
Q Consensus 73 d~------~~l~~~~~~~d~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~-v~r~V~~SS~~vy~~~---~~~~ 142 (485)
++ +++..+.+.+|+|||.||.....+.......+|+.||+++++.|++.. .+-+||+||+.+.... ....
T Consensus 90 ~~~LGis~~D~~~l~~eV~ivih~AAtvrFde~l~~al~iNt~Gt~~~l~lak~~~~l~~~vhVSTAy~n~~~~~i~E~~ 169 (467)
T KOG1221|consen 90 EPDLGISESDLRTLADEVNIVIHSAATVRFDEPLDVALGINTRGTRNVLQLAKEMVKLKALVHVSTAYSNCNVGHIEEKP 169 (467)
T ss_pred CcccCCChHHHHHHHhcCCEEEEeeeeeccchhhhhhhhhhhHhHHHHHHHHHHhhhhheEEEeehhheecccccccccc
Confidence 64 456666788999999999877777778888999999999999999986 7899999998765110 0111
Q ss_pred CCCCC------------CCC----------CCCCCCchHHHHHHHHHHHHHHHhCCCCceEEEEecCCcccCCCCCChHH
Q 047227 143 INGNE------------ALP----------YPPKHNDFYSATKAEGEALVIKANGTNGLLTCCIRPSSIFGPGDRLLVPS 200 (485)
Q Consensus 143 ~~~~e------------~~~----------~~~~~~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~~~~~~ 200 (485)
++..+ +.+ .-....+.|..+|+.+|+++.+++ .+++.+|+||+.|.+....++ +.
T Consensus 170 y~~~~~~~~~~~i~~~~~~~~~~ld~~~~~l~~~~PNTYtfTKal~E~~i~~~~--~~lPivIiRPsiI~st~~EP~-pG 246 (467)
T KOG1221|consen 170 YPMPETCNPEKILKLDENLSDELLDQKAPKLLGGWPNTYTFTKALAEMVIQKEA--ENLPLVIIRPSIITSTYKEPF-PG 246 (467)
T ss_pred cCccccCCHHHHHhhhccchHHHHHHhhHHhcCCCCCceeehHhhHHHHHHhhc--cCCCeEEEcCCceeccccCCC-CC
Confidence 11111 111 112356789999999999999975 679999999999998654322 22
Q ss_pred HHH----------HHHcCCCeEEecCCCceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCC--CCccHHHH
Q 047227 201 LVA----------AARAGKSKFIIGDGNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNM--ESIKFWEF 268 (485)
Q Consensus 201 ~~~----------~~~~g~~~~~~g~g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~--~~~t~~el 268 (485)
|+. ..-+|.--...+|.+...|+|.||.++.+++.+.-..... .......+||++++ .+++|+++
T Consensus 247 Widn~~gp~g~i~g~gkGvlr~~~~d~~~~adiIPvD~vvN~~ia~~~~~~~~---~~~~~~~IY~~tss~~Np~t~~~~ 323 (467)
T KOG1221|consen 247 WIDNLNGPDGVIIGYGKGVLRCFLVDPKAVADIIPVDMVVNAMIASAWQHAGN---SKEKTPPIYHLTSSNDNPVTWGDF 323 (467)
T ss_pred ccccCCCCceEEEEeccceEEEEEEccccccceeeHHHHHHHHHHHHHHHhcc---CCCCCCcEEEecccccCcccHHHH
Confidence 222 2234444456678889999999999999998665322211 11123569999987 58999999
Q ss_pred HHHHHHHcC
Q 047227 269 VSLILEGLG 277 (485)
Q Consensus 269 ~~~i~~~~g 277 (485)
.+...+...
T Consensus 324 ~e~~~~~~~ 332 (467)
T KOG1221|consen 324 IELALRYFE 332 (467)
T ss_pred HHHHHHhcc
Confidence 998887764
|
|
| >PRK12827 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.6e-18 Score=165.03 Aligned_cols=220 Identities=21% Similarity=0.192 Sum_probs=154.9
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhh--cCCCeEEEEecCCCHHHHHHHhc
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEAL--RSGRAHYVSFDLRHKAQVLQALQ 82 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~Dl~d~~~l~~~~~ 82 (485)
.++|++|||||+|+||+++++.|+++| ++|.++++........... ..... ...++.++.+|+.|.+++.++++
T Consensus 4 ~~~~~ilItGasg~iG~~la~~l~~~g-~~v~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 79 (249)
T PRK12827 4 LDSRRVLITGGSGGLGRAIAVRLAADG-ADVIVLDIHPMRGRAEADA---VAAGIEAAGGKALGLAFDVRDFAATRAALD 79 (249)
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHCC-CeEEEEcCcccccHHHHHH---HHHHHHhcCCcEEEEEccCCCHHHHHHHHH
Confidence 356899999999999999999999999 5888877643321111110 11111 13468899999999998887763
Q ss_pred -------CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHHH-----hcCCCEEEEecCccccccCCCCcC
Q 047227 83 -------GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDACA-----ELKVKRLIYTSSPSVVFDGVHGII 143 (485)
Q Consensus 83 -------~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~~-----~~~v~r~V~~SS~~vy~~~~~~~~ 143 (485)
++|+|||+++... ..+++...+++|+.++.++++++. +.+.+++|++||...+..
T Consensus 80 ~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~------ 153 (249)
T PRK12827 80 AGVEEFGRLDILVNNAGIATDAAFAELSIEEWDDVIDVNLDGFFNVTQAALPPMIRARRGGRIVNIASVAGVRG------ 153 (249)
T ss_pred HHHHHhCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCCeEEEEECCchhcCC------
Confidence 4899999999432 223456678999999999999998 456679999999776631
Q ss_pred CCCCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCce
Q 047227 144 NGNEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNV 220 (485)
Q Consensus 144 ~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~ 220 (485)
..+...|+.+|...+.+++.++.+ .+++++++||+.+.++........ .......+ .
T Consensus 154 ---------~~~~~~y~~sK~a~~~~~~~l~~~~~~~~i~~~~i~pg~v~t~~~~~~~~~--~~~~~~~~---------~ 213 (249)
T PRK12827 154 ---------NRGQVNYAASKAGLIGLTKTLANELAPRGITVNAVAPGAINTPMADNAAPT--EHLLNPVP---------V 213 (249)
T ss_pred ---------CCCCchhHHHHHHHHHHHHHHHHHhhhhCcEEEEEEECCcCCCcccccchH--HHHHhhCC---------C
Confidence 234567999999999988877643 489999999999999864432221 11222211 1
Q ss_pred eecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCC
Q 047227 221 YDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNM 260 (485)
Q Consensus 221 ~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~ 260 (485)
..+.+++|+|+++..++.... ....|+.+++.++
T Consensus 214 ~~~~~~~~va~~~~~l~~~~~------~~~~g~~~~~~~g 247 (249)
T PRK12827 214 QRLGEPDEVAALVAFLVSDAA------SYVTGQVIPVDGG 247 (249)
T ss_pred cCCcCHHHHHHHHHHHcCccc------CCccCcEEEeCCC
Confidence 124578999999888764321 2256788888765
|
|
| >PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.9e-19 Score=171.32 Aligned_cols=230 Identities=18% Similarity=0.131 Sum_probs=154.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc----
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ---- 82 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~---- 82 (485)
+++||||||+|+||.++++.|.++| ++|.+++|+......... .+.......++.++.+|++|.+++.++++
T Consensus 2 ~k~ilItG~~~~IG~~la~~l~~~g-~~vi~~~r~~~~~~~~~~---~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~ 77 (259)
T PRK12384 2 NQVAVVIGGGQTLGAFLCHGLAEEG-YRVAVADINSEKAANVAQ---EINAEYGEGMAYGFGADATSEQSVLALSRGVDE 77 (259)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHH---HHHHhcCCceeEEEEccCCCHHHHHHHHHHHHH
Confidence 4689999999999999999999999 689998876431110000 01111112468899999999988776654
Q ss_pred ---CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHHHh----cC-CCEEEEecCccccccCCCCcCCCCC
Q 047227 83 ---GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDACAE----LK-VKRLIYTSSPSVVFDGVHGIINGNE 147 (485)
Q Consensus 83 ---~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~~~----~~-v~r~V~~SS~~vy~~~~~~~~~~~e 147 (485)
++|+|||+|+... ...+++..+++|+.++.++++++.+ .+ -.++|++||.....
T Consensus 78 ~~~~id~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~~~iv~~ss~~~~~----------- 146 (259)
T PRK12384 78 IFGRVDLLVYNAGIAKAAFITDFQLGDFDRSLQVNLVGYFLCAREFSRLMIRDGIQGRIIQINSKSGKV----------- 146 (259)
T ss_pred HcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCcEEEEecCccccc-----------
Confidence 4799999998321 2234566789999998887777654 34 35899999854321
Q ss_pred CCCCCCCCCchHHHHHHHHHHHHHHHhC---CCCceEEEEecCCcccCCCC-CChHHHHHHHH--cCCCeEEecCCCcee
Q 047227 148 ALPYPPKHNDFYSATKAEGEALVIKANG---TNGLLTCCIRPSSIFGPGDR-LLVPSLVAAAR--AGKSKFIIGDGNNVY 221 (485)
Q Consensus 148 ~~~~~~~~~~~Y~~sK~~~E~~~~~~~~---~~g~~~~ilRp~~v~Gp~~~-~~~~~~~~~~~--~g~~~~~~g~g~~~~ 221 (485)
+......|+.+|+..+.+++.++. .+|+++.++|||.++++... ..++.+..... .++....+.++....
T Consensus 147 ----~~~~~~~Y~~sKaa~~~l~~~la~e~~~~gi~v~~v~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (259)
T PRK12384 147 ----GSKHNSGYSAAKFGGVGLTQSLALDLAEYGITVHSLMLGNLLKSPMFQSLLPQYAKKLGIKPDEVEQYYIDKVPLK 222 (259)
T ss_pred ----CCCCCchhHHHHHHHHHHHHHHHHHHHHcCcEEEEEecCCcccchhhhhhhHHHHHhcCCChHHHHHHHHHhCccc
Confidence 112346799999999998888763 47899999999998876432 22222221110 000001122334556
Q ss_pred ecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCC
Q 047227 222 DFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNME 261 (485)
Q Consensus 222 ~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~ 261 (485)
.+++++|++.+++.++.... ....|+.|++.+++
T Consensus 223 ~~~~~~dv~~~~~~l~~~~~------~~~~G~~~~v~~g~ 256 (259)
T PRK12384 223 RGCDYQDVLNMLLFYASPKA------SYCTGQSINVTGGQ 256 (259)
T ss_pred CCCCHHHHHHHHHHHcCccc------ccccCceEEEcCCE
Confidence 78999999999997754211 12468899998875
|
|
| >PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=7.6e-19 Score=167.60 Aligned_cols=221 Identities=15% Similarity=0.053 Sum_probs=152.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhh-cCCCeEEEEecCCCHHHHHHHhc--
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEAL-RSGRAHYVSFDLRHKAQVLQALQ-- 82 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~-- 82 (485)
++++||||||+|+||++++++|+++| ++|++..+...... ........ ...++.++.+|++|++++.++++
T Consensus 5 ~~~~vlitGasg~iG~~l~~~l~~~g-~~v~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 78 (252)
T PRK06077 5 KDKVVVVTGSGRGIGRAIAVRLAKEG-SLVVVNAKKRAEEM-----NETLKMVKENGGEGIGVLADVSTREGCETLAKAT 78 (252)
T ss_pred CCcEEEEeCCCChHHHHHHHHHHHCC-CEEEEEeCCChHHH-----HHHHHHHHHcCCeeEEEEeccCCHHHHHHHHHHH
Confidence 45899999999999999999999999 57776654322110 00111111 12356788999999988777664
Q ss_pred -----CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHHHhc--CCCEEEEecCccccccCCCCcCCCCCC
Q 047227 83 -----GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDACAEL--KVKRLIYTSSPSVVFDGVHGIINGNEA 148 (485)
Q Consensus 83 -----~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~~~~--~v~r~V~~SS~~vy~~~~~~~~~~~e~ 148 (485)
++|+|||+||... .....+..+++|+.++.++.+++.+. ..+++|++||...|.
T Consensus 79 ~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~------------ 146 (252)
T PRK06077 79 IDRYGVADILVNNAGLGLFSPFLNVDDKLIDKHISTDFKSVIYCSQELAKEMREGGAIVNIASVAGIR------------ 146 (252)
T ss_pred HHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhHhCHHHHHHHHHHHHHhhcCcEEEEEcchhccC------------
Confidence 5899999999311 11123567899999999999988864 235899999987763
Q ss_pred CCCCCCCCchHHHHHHHHHHHHHHHhCCC--CceEEEEecCCcccCCCCCChH---HHHHHHHcCCCeEEecCCCceeec
Q 047227 149 LPYPPKHNDFYSATKAEGEALVIKANGTN--GLLTCCIRPSSIFGPGDRLLVP---SLVAAARAGKSKFIIGDGNNVYDF 223 (485)
Q Consensus 149 ~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~--g~~~~ilRp~~v~Gp~~~~~~~---~~~~~~~~g~~~~~~g~g~~~~~~ 223 (485)
+..+.+.|+.+|+..|.+++.++.+. ++.+.+++|+.+.++....... ........ .......+
T Consensus 147 ---~~~~~~~Y~~sK~~~~~~~~~l~~~~~~~i~v~~v~Pg~i~t~~~~~~~~~~~~~~~~~~~--------~~~~~~~~ 215 (252)
T PRK06077 147 ---PAYGLSIYGAMKAAVINLTKYLALELAPKIRVNAIAPGFVKTKLGESLFKVLGMSEKEFAE--------KFTLMGKI 215 (252)
T ss_pred ---CCCCchHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeeCCccChHHHhhhhcccccHHHHHH--------hcCcCCCC
Confidence 23466889999999999999877543 6899999999998764321100 00000110 11123368
Q ss_pred ccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCCCc
Q 047227 224 TYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMESI 263 (485)
Q Consensus 224 i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~~ 263 (485)
++++|+|++++.+++. +...|+.|++.+++.+
T Consensus 216 ~~~~dva~~~~~~~~~--------~~~~g~~~~i~~g~~~ 247 (252)
T PRK06077 216 LDPEEVAEFVAAILKI--------ESITGQVFVLDSGESL 247 (252)
T ss_pred CCHHHHHHHHHHHhCc--------cccCCCeEEecCCeec
Confidence 9999999999998752 2256889999987543
|
|
| >PRK06138 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=7.3e-19 Score=167.75 Aligned_cols=219 Identities=19% Similarity=0.153 Sum_probs=152.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc---
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ--- 82 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 82 (485)
+++++|||||+|+||+++++.|+++| ++|.+++|....... .........++.++.+|+.|++++.++++
T Consensus 4 ~~k~~lItG~sg~iG~~la~~l~~~G-~~v~~~~r~~~~~~~------~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~i~ 76 (252)
T PRK06138 4 AGRVAIVTGAGSGIGRATAKLFAREG-ARVVVADRDAEAAER------VAAAIAAGGRAFARQGDVGSAEAVEALVDFVA 76 (252)
T ss_pred CCcEEEEeCCCchHHHHHHHHHHHCC-CeEEEecCCHHHHHH------HHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHH
Confidence 46799999999999999999999999 589888876431110 11111123468899999999998887765
Q ss_pred ----CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHH----HhcCCCEEEEecCccccccCCCCcCCCCC
Q 047227 83 ----GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDAC----AELKVKRLIYTSSPSVVFDGVHGIINGNE 147 (485)
Q Consensus 83 ----~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~----~~~~v~r~V~~SS~~vy~~~~~~~~~~~e 147 (485)
++|+|||+++... ..+++...+++|+.++.++.+++ ++.+.+++|++||...+.
T Consensus 77 ~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~~sS~~~~~----------- 145 (252)
T PRK06138 77 ARWGRLDVLVNNAGFGCGGTVVTTDEADWDAVMRVNVGGVFLWAKYAIPIMQRQGGGSIVNTASQLALA----------- 145 (252)
T ss_pred HHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhhhHHHHHHHHHHHHHhcCCeEEEEECChhhcc-----------
Confidence 5899999999321 22345567899999987766654 556778999999975542
Q ss_pred CCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCChH-----HHHHHHHcCCCeEEecCCCc
Q 047227 148 ALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLLVP-----SLVAAARAGKSKFIIGDGNN 219 (485)
Q Consensus 148 ~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~~~-----~~~~~~~~g~~~~~~g~g~~ 219 (485)
+..+...|+.+|...+.+++.++.+ .+++++++||+.++++.....+. ........+. ..
T Consensus 146 ----~~~~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~--------~~ 213 (252)
T PRK06138 146 ----GGRGRAAYVASKGAIASLTRAMALDHATDGIRVNAVAPGTIDTPYFRRIFARHADPEALREALRAR--------HP 213 (252)
T ss_pred ----CCCCccHHHHHHHHHHHHHHHHHHHHHhcCeEEEEEEECCccCcchhhhhccccChHHHHHHHHhc--------CC
Confidence 1234568999999999999888654 48999999999999885322111 1111111111 11
Q ss_pred eeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCC
Q 047227 220 VYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNM 260 (485)
Q Consensus 220 ~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~ 260 (485)
...+++++|+|++++.++...... ..|+.+.+.++
T Consensus 214 ~~~~~~~~d~a~~~~~l~~~~~~~------~~g~~~~~~~g 248 (252)
T PRK06138 214 MNRFGTAEEVAQAALFLASDESSF------ATGTTLVVDGG 248 (252)
T ss_pred CCCCcCHHHHHHHHHHHcCchhcC------ccCCEEEECCC
Confidence 224789999999999887643222 45777777654
|
|
| >PRK07775 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.5e-18 Score=167.82 Aligned_cols=215 Identities=16% Similarity=0.160 Sum_probs=148.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhh-cCCCeEEEEecCCCHHHHHHHhc--
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEAL-RSGRAHYVSFDLRHKAQVLQALQ-- 82 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~-- 82 (485)
+++++|||||+|+||+++++.|+++| ++|.++.|+..... . ...... ...++.++.+|++|.+++.++++
T Consensus 9 ~~~~vlVtGa~g~iG~~la~~L~~~G-~~V~~~~r~~~~~~----~--~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 81 (274)
T PRK07775 9 DRRPALVAGASSGIGAATAIELAAAG-FPVALGARRVEKCE----E--LVDKIRADGGEAVAFPLDVTDPDSVKSFVAQA 81 (274)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEeCCHHHHH----H--HHHHHHhcCCeEEEEECCCCCHHHHHHHHHHH
Confidence 45799999999999999999999999 58888877543110 0 011110 12467888999999998887775
Q ss_pred -----CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHHHh----cCCCEEEEecCccccccCCCCcCCCC
Q 047227 83 -----GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDACAE----LKVKRLIYTSSPSVVFDGVHGIINGN 146 (485)
Q Consensus 83 -----~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~~~----~~v~r~V~~SS~~vy~~~~~~~~~~~ 146 (485)
+.|+|||+|+... ..+++...+++|+.++.++.+++.+ .+..+||++||...|..
T Consensus 82 ~~~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~l~~~~~~~~g~iv~isS~~~~~~--------- 152 (274)
T PRK07775 82 EEALGEIEVLVSGAGDTYFGKLHEISTEQFESQVQIHLVGANRLATAVLPGMIERRRGDLIFVGSDVALRQ--------- 152 (274)
T ss_pred HHhcCCCCEEEECCCcCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCceEEEECChHhcCC---------
Confidence 4799999999321 1123455679999999999888753 34568999999776631
Q ss_pred CCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCC----hHHHHHHHHcCCCeEEecCCCc
Q 047227 147 EALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLL----VPSLVAAARAGKSKFIIGDGNN 219 (485)
Q Consensus 147 e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~----~~~~~~~~~~g~~~~~~g~g~~ 219 (485)
..+...|+.+|...|.+++.++.. .|++++++|||.+.++..... +..+....... + +..
T Consensus 153 ------~~~~~~Y~~sK~a~~~l~~~~~~~~~~~gi~v~~v~pG~~~t~~~~~~~~~~~~~~~~~~~~~------~-~~~ 219 (274)
T PRK07775 153 ------RPHMGAYGAAKAGLEAMVTNLQMELEGTGVRASIVHPGPTLTGMGWSLPAEVIGPMLEDWAKW------G-QAR 219 (274)
T ss_pred ------CCCcchHHHHHHHHHHHHHHHHHHhcccCeEEEEEeCCcccCcccccCChhhhhHHHHHHHHh------c-ccc
Confidence 123567999999999999988644 489999999998765422111 11111111110 1 122
Q ss_pred eeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEee
Q 047227 220 VYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVT 258 (485)
Q Consensus 220 ~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~ 258 (485)
...++|++|+|++++.+++. + ..+.+||+.
T Consensus 220 ~~~~~~~~dva~a~~~~~~~--------~-~~~~~~~~~ 249 (274)
T PRK07775 220 HDYFLRASDLARAITFVAET--------P-RGAHVVNME 249 (274)
T ss_pred cccccCHHHHHHHHHHHhcC--------C-CCCCeeEEe
Confidence 35699999999999988763 1 234577775
|
|
| >PRK07060 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.9e-18 Score=164.09 Aligned_cols=215 Identities=17% Similarity=0.105 Sum_probs=155.1
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc--
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ-- 82 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 82 (485)
.++++++||||+|+||+++++.|.++| ++|++++|+.... .......+..++.+|+.|.+.+.++++
T Consensus 7 ~~~~~~lItGa~g~iG~~~a~~l~~~g-~~V~~~~r~~~~~----------~~~~~~~~~~~~~~D~~~~~~v~~~~~~~ 75 (245)
T PRK07060 7 FSGKSVLVTGASSGIGRACAVALAQRG-ARVVAAARNAAAL----------DRLAGETGCEPLRLDVGDDAAIRAALAAA 75 (245)
T ss_pred cCCCEEEEeCCcchHHHHHHHHHHHCC-CEEEEEeCCHHHH----------HHHHHHhCCeEEEecCCCHHHHHHHHHHh
Confidence 456899999999999999999999999 5899998864311 111112246788999999998888876
Q ss_pred -CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHHHhc----C-CCEEEEecCccccccCCCCcCCCCCCC
Q 047227 83 -GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDACAEL----K-VKRLIYTSSPSVVFDGVHGIINGNEAL 149 (485)
Q Consensus 83 -~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~~~~----~-v~r~V~~SS~~vy~~~~~~~~~~~e~~ 149 (485)
++|+|||+++... ...+++..+++|+.++.++++++.+. + .+++|++||...+..
T Consensus 76 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~------------ 143 (245)
T PRK07060 76 GAFDGLVNCAGIASLESALDMTAEGFDRVMAVNARGAALVARHVARAMIAAGRGGSIVNVSSQAALVG------------ 143 (245)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCcEEEEEccHHHcCC------------
Confidence 3899999999322 12345667789999999999988753 2 368999999766531
Q ss_pred CCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCChH--HHHHHHHcCCCeEEecCCCceeecc
Q 047227 150 PYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLLVP--SLVAAARAGKSKFIIGDGNNVYDFT 224 (485)
Q Consensus 150 ~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~~~--~~~~~~~~g~~~~~~g~g~~~~~~i 224 (485)
..+...|+.+|..+|.+++.++.. .+++++++||+.++++.....+. ......... .....++
T Consensus 144 ---~~~~~~y~~sK~a~~~~~~~~a~~~~~~~i~v~~v~pg~v~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~ 211 (245)
T PRK07060 144 ---LPDHLAYCASKAALDAITRVLCVELGPHGIRVNSVNPTVTLTPMAAEAWSDPQKSGPMLAA---------IPLGRFA 211 (245)
T ss_pred ---CCCCcHhHHHHHHHHHHHHHHHHHHhhhCeEEEEEeeCCCCCchhhhhccCHHHHHHHHhc---------CCCCCCC
Confidence 234567999999999999887653 47999999999999885321111 111111111 1234589
Q ss_pred cHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCC
Q 047227 225 YVANVAHAHICAERALASEVTVAEKAAGQAYFVTNM 260 (485)
Q Consensus 225 ~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~ 260 (485)
+++|+|+++..++..... ...|+.+++.++
T Consensus 212 ~~~d~a~~~~~l~~~~~~------~~~G~~~~~~~g 241 (245)
T PRK07060 212 EVDDVAAPILFLLSDAAS------MVSGVSLPVDGG 241 (245)
T ss_pred CHHHHHHHHHHHcCcccC------CccCcEEeECCC
Confidence 999999999988763222 256888888765
|
|
| >PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.3e-18 Score=165.90 Aligned_cols=220 Identities=16% Similarity=0.124 Sum_probs=154.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc---
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ--- 82 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 82 (485)
+++++|||||+|+||.++++.|+++| ++|++++|+...... .........++.++.+|+.|++++.++++
T Consensus 4 ~~~~vlItGasg~iG~~l~~~l~~~G-~~V~~~~r~~~~~~~------~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 76 (251)
T PRK07231 4 EGKVAIVTGASSGIGEGIARRFAAEG-ARVVVTDRNEEAAER------VAAEILAGGRAIAVAADVSDEADVEAAVAAAL 76 (251)
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCC-CEEEEEeCCHHHHHH------HHHHHhcCCeEEEEECCCCCHHHHHHHHHHHH
Confidence 46899999999999999999999999 589999987532110 01111113458899999999999887764
Q ss_pred ----CCCEEEEcCCCCC--------CCCchhhhHHHHHHHHHHHHHHHHh----cCCCEEEEecCccccccCCCCcCCCC
Q 047227 83 ----GAEVVFHMAAPNS--------SINNHKLHHSVNVEGTKNVIDACAE----LKVKRLIYTSSPSVVFDGVHGIINGN 146 (485)
Q Consensus 83 ----~~d~Vih~aa~~~--------~~~~~~~~~~~nv~~t~~ll~a~~~----~~v~r~V~~SS~~vy~~~~~~~~~~~ 146 (485)
++|+|||+++... ..++++..+++|+.++.++.+.+.+ .+.++||++||...++
T Consensus 77 ~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~---------- 146 (251)
T PRK07231 77 ERFGSVDILVNNAGTTHRNGPLLDVDEAEFDRIFAVNVKSPYLWTQAAVPAMRGEGGGAIVNVASTAGLR---------- 146 (251)
T ss_pred HHhCCCCEEEECCCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEcChhhcC----------
Confidence 4799999999421 2234567889999987777766654 5678999999987763
Q ss_pred CCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCChH----HHHHHHHcCCCeEEecCCCc
Q 047227 147 EALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLLVP----SLVAAARAGKSKFIIGDGNN 219 (485)
Q Consensus 147 e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~~~----~~~~~~~~g~~~~~~g~g~~ 219 (485)
+..+...|+.+|...+.+++.++.+ .++++++++|+.+.++....... ........+ ..
T Consensus 147 -----~~~~~~~y~~sk~~~~~~~~~~a~~~~~~~i~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~~---------~~ 212 (251)
T PRK07231 147 -----PRPGLGWYNASKGAVITLTKALAAELGPDKIRVNAVAPVVVETGLLEAFMGEPTPENRAKFLAT---------IP 212 (251)
T ss_pred -----CCCCchHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEEECccCCCcchhhhcccChHHHHHHhcC---------CC
Confidence 2345678999999999988877643 48999999999987654222111 111111111 12
Q ss_pred eeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCCC
Q 047227 220 VYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMES 262 (485)
Q Consensus 220 ~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~ 262 (485)
...+++++|+|++++.++.... ....|..+.+.++..
T Consensus 213 ~~~~~~~~dva~~~~~l~~~~~------~~~~g~~~~~~gg~~ 249 (251)
T PRK07231 213 LGRLGTPEDIANAALFLASDEA------SWITGVTLVVDGGRC 249 (251)
T ss_pred CCCCcCHHHHHHHHHHHhCccc------cCCCCCeEEECCCcc
Confidence 3457899999999998865221 124577777766543
|
|
| >PRK12746 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.3e-18 Score=164.53 Aligned_cols=219 Identities=17% Similarity=0.140 Sum_probs=150.7
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEe-ecCCccccCCccchhhhhhhh-cCCCeEEEEecCCCHHHHHHHhc
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIA-DLSDSIALEPHEEQGILGEAL-RSGRAHYVSFDLRHKAQVLQALQ 82 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~-~r~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~ 82 (485)
.++++++||||+|+||+++++.|+++| ++|.+. .|..... . ....... ...+++++.+|++|++++.++++
T Consensus 4 ~~~~~ilItGasg~iG~~la~~l~~~G-~~v~i~~~r~~~~~----~--~~~~~~~~~~~~~~~~~~D~~d~~~i~~~~~ 76 (254)
T PRK12746 4 LDGKVALVTGASRGIGRAIAMRLANDG-ALVAIHYGRNKQAA----D--ETIREIESNGGKAFLIEADLNSIDGVKKLVE 76 (254)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCC-CEEEEEcCCCHHHH----H--HHHHHHHhcCCcEEEEEcCcCCHHHHHHHHH
Confidence 345899999999999999999999999 577664 4432210 0 0111111 12468889999999998887765
Q ss_pred -------------CCCEEEEcCCCCCC-------CCchhhhHHHHHHHHHHHHHHHHhc--CCCEEEEecCccccccCCC
Q 047227 83 -------------GAEVVFHMAAPNSS-------INNHKLHHSVNVEGTKNVIDACAEL--KVKRLIYTSSPSVVFDGVH 140 (485)
Q Consensus 83 -------------~~d~Vih~aa~~~~-------~~~~~~~~~~nv~~t~~ll~a~~~~--~v~r~V~~SS~~vy~~~~~ 140 (485)
++|+|||+|+.... .......+++|+.++.++++++.+. +.+++|++||..++.
T Consensus 77 ~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~v~~sS~~~~~---- 152 (254)
T PRK12746 77 QLKNELQIRVGTSEIDILVNNAGIGTQGTIENTTEEIFDEIMAVNIKAPFFLIQQTLPLLRAEGRVINISSAEVRL---- 152 (254)
T ss_pred HHHHHhccccCCCCccEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECCHHhcC----
Confidence 48999999993221 1123556789999999999998764 345899999987763
Q ss_pred CcCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhC---CCCceEEEEecCCcccCCCCCCh--HHHHHHHHcCCCeEEec
Q 047227 141 GIINGNEALPYPPKHNDFYSATKAEGEALVIKANG---TNGLLTCCIRPSSIFGPGDRLLV--PSLVAAARAGKSKFIIG 215 (485)
Q Consensus 141 ~~~~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~---~~g~~~~ilRp~~v~Gp~~~~~~--~~~~~~~~~g~~~~~~g 215 (485)
+..+...|+.+|...|.+.+.++. ..++++++++|+.++++-..... +.+.......
T Consensus 153 -----------~~~~~~~Y~~sK~a~~~~~~~~~~~~~~~~i~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~------- 214 (254)
T PRK12746 153 -----------GFTGSIAYGLSKGALNTMTLPLAKHLGERGITVNTIMPGYTKTDINAKLLDDPEIRNFATNS------- 214 (254)
T ss_pred -----------CCCCCcchHhhHHHHHHHHHHHHHHHhhcCcEEEEEEECCccCcchhhhccChhHHHHHHhc-------
Confidence 123456799999999999877664 36799999999999887432111 1111111111
Q ss_pred CCCceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCC
Q 047227 216 DGNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNM 260 (485)
Q Consensus 216 ~g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~ 260 (485)
.....+++++|+|+++..++.... ....|+.|++.++
T Consensus 215 --~~~~~~~~~~dva~~~~~l~~~~~------~~~~g~~~~i~~~ 251 (254)
T PRK12746 215 --SVFGRIGQVEDIADAVAFLASSDS------RWVTGQIIDVSGG 251 (254)
T ss_pred --CCcCCCCCHHHHHHHHHHHcCccc------CCcCCCEEEeCCC
Confidence 112357789999999987755211 1246789999775
|
|
| >PRK12935 acetoacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.1e-18 Score=164.13 Aligned_cols=220 Identities=17% Similarity=0.066 Sum_probs=153.5
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhh-cCCCeEEEEecCCCHHHHHHHhcC
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEAL-RSGRAHYVSFDLRHKAQVLQALQG 83 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~~ 83 (485)
..++++|||||+|+||++++++|+++| +.|.+..+...... ++ ...... ...++.++.+|++|++++.++++.
T Consensus 4 ~~~~~~lItG~s~~iG~~la~~l~~~g-~~v~~~~~~~~~~~---~~--~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~ 77 (247)
T PRK12935 4 LNGKVAIVTGGAKGIGKAITVALAQEG-AKVVINYNSSKEAA---EN--LVNELGKEGHDVYAVQADVSKVEDANRLVEE 77 (247)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHcC-CEEEEEcCCcHHHH---HH--HHHHHHhcCCeEEEEECCCCCHHHHHHHHHH
Confidence 456899999999999999999999999 57766543321100 00 111111 124688899999999988887754
Q ss_pred -------CCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHHHh----cCCCEEEEecCccccccCCCCcCCC
Q 047227 84 -------AEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDACAE----LKVKRLIYTSSPSVVFDGVHGIING 145 (485)
Q Consensus 84 -------~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~~~----~~v~r~V~~SS~~vy~~~~~~~~~~ 145 (485)
+|+|||+|+... ....++..+++|+.++.++++++.. .+.+++|++||...+..
T Consensus 78 ~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~-------- 149 (247)
T PRK12935 78 AVNHFGKVDILVNNAGITRDRTFKKLNREDWERVIDVNLSSVFNTTSAVLPYITEAEEGRIISISSIIGQAG-------- 149 (247)
T ss_pred HHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEcchhhcCC--------
Confidence 799999999322 1245677889999999999999874 34568999999654421
Q ss_pred CCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCceee
Q 047227 146 NEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYD 222 (485)
Q Consensus 146 ~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~ 222 (485)
..+...|+.+|...|.+++.++.+ .++++++++|+.+.++...............+ ...+.
T Consensus 150 -------~~~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~v~t~~~~~~~~~~~~~~~~~---------~~~~~ 213 (247)
T PRK12935 150 -------GFGQTNYSAAKAGMLGFTKSLALELAKTNVTVNAICPGFIDTEMVAEVPEEVRQKIVAK---------IPKKR 213 (247)
T ss_pred -------CCCCcchHHHHHHHHHHHHHHHHHHHHcCcEEEEEEeCCCcChhhhhccHHHHHHHHHh---------CCCCC
Confidence 234568999999998888776543 48999999999998764222211222222222 12356
Q ss_pred cccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCC
Q 047227 223 FTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNME 261 (485)
Q Consensus 223 ~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~ 261 (485)
+.+++|+++++..+++. . .-..|+.||+.++.
T Consensus 214 ~~~~edva~~~~~~~~~-~------~~~~g~~~~i~~g~ 245 (247)
T PRK12935 214 FGQADEIAKGVVYLCRD-G------AYITGQQLNINGGL 245 (247)
T ss_pred CcCHHHHHHHHHHHcCc-c------cCccCCEEEeCCCc
Confidence 89999999999988652 1 11568999998863
|
|
| >PRK06180 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.5e-18 Score=168.12 Aligned_cols=202 Identities=14% Similarity=0.101 Sum_probs=142.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc----
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ---- 82 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~---- 82 (485)
++++|||||+|+||+++++.|+++| ++|.+++|....... +.. ....++..+.+|++|.+++.++++
T Consensus 4 ~~~vlVtGasggiG~~la~~l~~~G-~~V~~~~r~~~~~~~-------l~~-~~~~~~~~~~~D~~d~~~~~~~~~~~~~ 74 (277)
T PRK06180 4 MKTWLITGVSSGFGRALAQAALAAG-HRVVGTVRSEAARAD-------FEA-LHPDRALARLLDVTDFDAIDAVVADAEA 74 (277)
T ss_pred CCEEEEecCCChHHHHHHHHHHhCc-CEEEEEeCCHHHHHH-------HHh-hcCCCeeEEEccCCCHHHHHHHHHHHHH
Confidence 5789999999999999999999999 589999886431100 111 112468889999999998887775
Q ss_pred ---CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHHH----hcCCCEEEEecCccccccCCCCcCCCCCC
Q 047227 83 ---GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDACA----ELKVKRLIYTSSPSVVFDGVHGIINGNEA 148 (485)
Q Consensus 83 ---~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~~----~~~v~r~V~~SS~~vy~~~~~~~~~~~e~ 148 (485)
++|+|||+|+... ...+....+++|+.++.++++++. +.+.+++|++||...+..
T Consensus 75 ~~~~~d~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~iSS~~~~~~----------- 143 (277)
T PRK06180 75 TFGPIDVLVNNAGYGHEGAIEESPLAEMRRQFEVNVFGAVAMTKAVLPGMRARRRGHIVNITSMGGLIT----------- 143 (277)
T ss_pred HhCCCCEEEECCCccCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhccCCCEEEEEecccccCC-----------
Confidence 4899999999422 112345668999999999999853 445679999999766521
Q ss_pred CCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCC-------ChHHH---HHHHHcCCCeEEec
Q 047227 149 LPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRL-------LVPSL---VAAARAGKSKFIIG 215 (485)
Q Consensus 149 ~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~-------~~~~~---~~~~~~g~~~~~~g 215 (485)
..+...|+.+|...|.+++.++.+ +|++++++||+.+.++.... ..... ........ ...
T Consensus 144 ----~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 216 (277)
T PRK06180 144 ----MPGIGYYCGSKFALEGISESLAKEVAPFGIHVTAVEPGSFRTDWAGRSMVRTPRSIADYDALFGPIRQAR---EAK 216 (277)
T ss_pred ----CCCcchhHHHHHHHHHHHHHHHHHhhhhCcEEEEEecCCcccCccccccccCCCCcHhHHHHHHHHHHHH---Hhh
Confidence 235678999999999998887643 58999999999997763211 11111 11111000 001
Q ss_pred CCCceeecccHHHHHHHHHHHHH
Q 047227 216 DGNNVYDFTYVANVAHAHICAER 238 (485)
Q Consensus 216 ~g~~~~~~i~v~D~a~a~~~~~~ 238 (485)
. ...+..++|+|++++.+++
T Consensus 217 ~---~~~~~~~~dva~~~~~~l~ 236 (277)
T PRK06180 217 S---GKQPGDPAKAAQAILAAVE 236 (277)
T ss_pred c---cCCCCCHHHHHHHHHHHHc
Confidence 1 1235679999999998876
|
|
| >PRK07890 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=6e-19 Score=168.99 Aligned_cols=218 Identities=18% Similarity=0.143 Sum_probs=154.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhc--CCCeEEEEecCCCHHHHHHHhc-
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALR--SGRAHYVSFDLRHKAQVLQALQ- 82 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~Dl~d~~~l~~~~~- 82 (485)
++|+||||||+|+||++++++|+++| ++|.+++|+..... . ....+. ..++.++.+|++|.+++.++++
T Consensus 4 ~~k~vlItGa~~~IG~~la~~l~~~G-~~V~~~~r~~~~~~----~---~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 75 (258)
T PRK07890 4 KGKVVVVSGVGPGLGRTLAVRAARAG-ADVVLAARTAERLD----E---VAAEIDDLGRRALAVPTDITDEDQCANLVAL 75 (258)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHcC-CEEEEEeCCHHHHH----H---HHHHHHHhCCceEEEecCCCCHHHHHHHHHH
Confidence 46899999999999999999999999 68999988653111 1 111111 3468899999999988876663
Q ss_pred ------CCCEEEEcCCCCC--------CCCchhhhHHHHHHHHHHHHHHHHhc---CCCEEEEecCccccccCCCCcCCC
Q 047227 83 ------GAEVVFHMAAPNS--------SINNHKLHHSVNVEGTKNVIDACAEL---KVKRLIYTSSPSVVFDGVHGIING 145 (485)
Q Consensus 83 ------~~d~Vih~aa~~~--------~~~~~~~~~~~nv~~t~~ll~a~~~~---~v~r~V~~SS~~vy~~~~~~~~~~ 145 (485)
++|+|||+|+... ..+++...+++|+.++..+++++... ..+++|++||...+.
T Consensus 76 ~~~~~g~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~ii~~sS~~~~~--------- 146 (258)
T PRK07890 76 ALERFGRVDALVNNAFRVPSMKPLADADFAHWRAVIELNVLGTLRLTQAFTPALAESGGSIVMINSMVLRH--------- 146 (258)
T ss_pred HHHHcCCccEEEECCccCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCEEEEEechhhcc---------
Confidence 4799999998321 22456778999999999999998753 235899999975542
Q ss_pred CCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCChH-----------HHHHHHHcCCCe
Q 047227 146 NEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLLVP-----------SLVAAARAGKSK 211 (485)
Q Consensus 146 ~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~~~-----------~~~~~~~~g~~~ 211 (485)
+..+...|+.+|...|.+++.++.+ .+++++++||+.+++|.....+. .+.....+.
T Consensus 147 ------~~~~~~~Y~~sK~a~~~l~~~~a~~~~~~~i~v~~v~pg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 217 (258)
T PRK07890 147 ------SQPKYGAYKMAKGALLAASQSLATELGPQGIRVNSVAPGYIWGDPLKGYFRHQAGKYGVTVEQIYAETAAN--- 217 (258)
T ss_pred ------CCCCcchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEeCCccCcHHHHHHhhhcccccCCCHHHHHHHHhhc---
Confidence 1234568999999999999988754 48999999999999985322111 111111111
Q ss_pred EEecCCCceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCC
Q 047227 212 FIIGDGNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNME 261 (485)
Q Consensus 212 ~~~g~g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~ 261 (485)
.....+.+++|+|++++.+++.... ...|+.+.+.++.
T Consensus 218 ------~~~~~~~~~~dva~a~~~l~~~~~~------~~~G~~i~~~gg~ 255 (258)
T PRK07890 218 ------SDLKRLPTDDEVASAVLFLASDLAR------AITGQTLDVNCGE 255 (258)
T ss_pred ------CCccccCCHHHHHHHHHHHcCHhhh------CccCcEEEeCCcc
Confidence 1223478899999999888653222 2567777665543
|
|
| >TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.4e-18 Score=162.87 Aligned_cols=217 Identities=16% Similarity=0.143 Sum_probs=152.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhh--cCCCeEEEEecCCCHHHHHHHhc-
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEAL--RSGRAHYVSFDLRHKAQVLQALQ- 82 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~Dl~d~~~l~~~~~- 82 (485)
+++++|||||+|+||++++++|+++| ++|.+++|....... +...+ ...++.++.+|+.|.+++.++++
T Consensus 2 ~~~~ilItGas~~iG~~la~~l~~~g-~~v~~~~r~~~~~~~-------~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 73 (250)
T TIGR03206 2 KDKTAIVTGGGGGIGGATCRRFAEEG-AKVAVFDLNREAAEK-------VAADIRAKGGNAQAFACDITDRDSVDTAVAA 73 (250)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCC-CEEEEecCCHHHHHH-------HHHHHHhcCCcEEEEEcCCCCHHHHHHHHHH
Confidence 46899999999999999999999999 689888876532111 11111 13468899999999998887765
Q ss_pred ------CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHHH----hcCCCEEEEecCccccccCCCCcCCC
Q 047227 83 ------GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDACA----ELKVKRLIYTSSPSVVFDGVHGIING 145 (485)
Q Consensus 83 ------~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~~----~~~v~r~V~~SS~~vy~~~~~~~~~~ 145 (485)
++|+|||+++... ...+.+..+++|+.++.++++++. +.+.+++|++||...++.
T Consensus 74 ~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~iss~~~~~~-------- 145 (250)
T TIGR03206 74 AEQALGPVDVLVNNAGWDKFGPFTKTEPPLWERLIAINLTGALHMHHAVLPGMVERGAGRIVNIASDAARVG-------- 145 (250)
T ss_pred HHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCeEEEEECchhhccC--------
Confidence 4899999998321 122345678999999999888775 456779999999877642
Q ss_pred CCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCCh------HHHHHHHHcCCCeEEecC
Q 047227 146 NEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLLV------PSLVAAARAGKSKFIIGD 216 (485)
Q Consensus 146 ~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~~------~~~~~~~~~g~~~~~~g~ 216 (485)
......|+.+|...+.+.+.++.+ .+++++++||+.++++...... ..+........+
T Consensus 146 -------~~~~~~Y~~sK~a~~~~~~~la~~~~~~~i~v~~v~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 212 (250)
T TIGR03206 146 -------SSGEAVYAACKGGLVAFSKTMAREHARHGITVNVVCPGPTDTALLDDICGGAENPEKLREAFTRAIP------ 212 (250)
T ss_pred -------CCCCchHHHHHHHHHHHHHHHHHHHhHhCcEEEEEecCcccchhHHhhhhccCChHHHHHHHHhcCC------
Confidence 123457999999999988887654 4899999999999887421110 112222222211
Q ss_pred CCceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCC
Q 047227 217 GNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNM 260 (485)
Q Consensus 217 g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~ 260 (485)
...+...+|+|+++..++... .....|+.+++.++
T Consensus 213 ---~~~~~~~~dva~~~~~l~~~~------~~~~~g~~~~~~~g 247 (250)
T TIGR03206 213 ---LGRLGQPDDLPGAILFFSSDD------ASFITGQVLSVSGG 247 (250)
T ss_pred ---ccCCcCHHHHHHHHHHHcCcc------cCCCcCcEEEeCCC
Confidence 123556899999999875421 12256889988765
|
Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate. |
| >PRK12939 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.3e-18 Score=162.91 Aligned_cols=223 Identities=21% Similarity=0.178 Sum_probs=158.0
Q ss_pred CCCCCCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhc--CCCeEEEEecCCCHHHHH
Q 047227 1 MSGEENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALR--SGRAHYVSFDLRHKAQVL 78 (485)
Q Consensus 1 M~~~~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~Dl~d~~~l~ 78 (485)
|+...++|+++||||+|.||+++++.|+++| ++|.+++|....... ....+. ..++.++.+|++|++++.
T Consensus 1 ~~~~~~~~~vlItGa~g~iG~~la~~l~~~G-~~v~~~~r~~~~~~~-------~~~~~~~~~~~~~~~~~Dl~~~~~~~ 72 (250)
T PRK12939 1 MASNLAGKRALVTGAARGLGAAFAEALAEAG-ATVAFNDGLAAEARE-------LAAALEAAGGRAHAIAADLADPASVQ 72 (250)
T ss_pred CCCCCCCCEEEEeCCCChHHHHHHHHHHHcC-CEEEEEeCCHHHHHH-------HHHHHHhcCCcEEEEEccCCCHHHHH
Confidence 5556678999999999999999999999999 588888776431111 111111 246889999999999888
Q ss_pred HHhc-------CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHHHhc----CCCEEEEecCccccccCCC
Q 047227 79 QALQ-------GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDACAEL----KVKRLIYTSSPSVVFDGVH 140 (485)
Q Consensus 79 ~~~~-------~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~~~~----~v~r~V~~SS~~vy~~~~~ 140 (485)
++++ ++|+|||+++... ...+.+..+++|+.++.++++++... +..++|++||...+.
T Consensus 73 ~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~---- 148 (250)
T PRK12939 73 RFFDAAAAALGGLDGLVNNAGITNSKSATELDIDTWDAVMNVNVRGTFLMLRAALPHLRDSGRGRIVNLASDTALW---- 148 (250)
T ss_pred HHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEECchhhcc----
Confidence 7764 5899999999422 22345567889999999999887653 345999999966542
Q ss_pred CcCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCChH-HHHHHHHcCCCeEEecC
Q 047227 141 GIINGNEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLLVP-SLVAAARAGKSKFIIGD 216 (485)
Q Consensus 141 ~~~~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~~~-~~~~~~~~g~~~~~~g~ 216 (485)
+......|+.+|...|.+++.++.+ .++++++++||.+..+.....-. .+......+
T Consensus 149 -----------~~~~~~~y~~sK~~~~~~~~~l~~~~~~~~i~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~-------- 209 (250)
T PRK12939 149 -----------GAPKLGAYVASKGAVIGMTRSLARELGGRGITVNAIAPGLTATEATAYVPADERHAYYLKG-------- 209 (250)
T ss_pred -----------CCCCcchHHHHHHHHHHHHHHHHHHHhhhCEEEEEEEECCCCCccccccCChHHHHHHHhc--------
Confidence 1233467999999999999877643 57999999999987765322111 222222222
Q ss_pred CCceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCC
Q 047227 217 GNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNME 261 (485)
Q Consensus 217 g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~ 261 (485)
.....+++++|+|++++.++..... ...|+.+.+.++.
T Consensus 210 -~~~~~~~~~~dva~~~~~l~~~~~~------~~~G~~i~~~gg~ 247 (250)
T PRK12939 210 -RALERLQVPDDVAGAVLFLLSDAAR------FVTGQLLPVNGGF 247 (250)
T ss_pred -CCCCCCCCHHHHHHHHHHHhCcccc------CccCcEEEECCCc
Confidence 2334578999999999998753211 2568888887764
|
|
| >PRK06182 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.6e-18 Score=166.08 Aligned_cols=205 Identities=19% Similarity=0.159 Sum_probs=140.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc---
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ--- 82 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 82 (485)
++++++||||+|+||+++++.|+++| ++|++++|.... +.. +...+++++.+|++|.+++.++++
T Consensus 2 ~~k~vlItGasggiG~~la~~l~~~G-~~V~~~~r~~~~----------l~~-~~~~~~~~~~~Dv~~~~~~~~~~~~~~ 69 (273)
T PRK06182 2 QKKVALVTGASSGIGKATARRLAAQG-YTVYGAARRVDK----------MED-LASLGVHPLSLDVTDEASIKAAVDTII 69 (273)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCC-CEEEEEeCCHHH----------HHH-HHhCCCeEEEeeCCCHHHHHHHHHHHH
Confidence 35799999999999999999999999 589988876431 111 122468899999999998888775
Q ss_pred ----CCCEEEEcCCCCC-------CCCchhhhHHHHHHHH----HHHHHHHHhcCCCEEEEecCccccccCCCCcCCCCC
Q 047227 83 ----GAEVVFHMAAPNS-------SINNHKLHHSVNVEGT----KNVIDACAELKVKRLIYTSSPSVVFDGVHGIINGNE 147 (485)
Q Consensus 83 ----~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t----~~ll~a~~~~~v~r~V~~SS~~vy~~~~~~~~~~~e 147 (485)
++|+|||+||... ..++++..+++|+.++ ..++..+++.+.+++|++||...+.
T Consensus 70 ~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~g~iv~isS~~~~~----------- 138 (273)
T PRK06182 70 AEEGRIDVLVNNAGYGSYGAIEDVPIDEARRQFEVNLFGAARLTQLVLPHMRAQRSGRIINISSMGGKI----------- 138 (273)
T ss_pred HhcCCCCEEEECCCcCCCCchhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHhcCCCEEEEEcchhhcC-----------
Confidence 6899999999422 2235677889999885 5555667777778999999965431
Q ss_pred CCCCCCCCCchHHHHHHHHHHHHHHHh---CCCCceEEEEecCCcccCCCCCChHHHHHHHHcCCCe--------EEecC
Q 047227 148 ALPYPPKHNDFYSATKAEGEALVIKAN---GTNGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSK--------FIIGD 216 (485)
Q Consensus 148 ~~~~~~~~~~~Y~~sK~~~E~~~~~~~---~~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~--------~~~g~ 216 (485)
+......|+.+|...+.+.+.++ ..+|++++++||+.+.++........+... ..+... .....
T Consensus 139 ----~~~~~~~Y~~sKaa~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 213 (273)
T PRK06182 139 ----YTPLGAWYHATKFALEGFSDALRLEVAPFGIDVVVIEPGGIKTEWGDIAADHLLKT-SGNGAYAEQAQAVAASMRS 213 (273)
T ss_pred ----CCCCccHhHHHHHHHHHHHHHHHHHhcccCCEEEEEecCCcccccchhhhhhhccc-ccccchHHHHHHHHHHHHH
Confidence 01233579999999999876654 456899999999999887432110000000 000000 00001
Q ss_pred CCceeecccHHHHHHHHHHHHH
Q 047227 217 GNNVYDFTYVANVAHAHICAER 238 (485)
Q Consensus 217 g~~~~~~i~v~D~a~a~~~~~~ 238 (485)
......+.+++|+|++++.++.
T Consensus 214 ~~~~~~~~~~~~vA~~i~~~~~ 235 (273)
T PRK06182 214 TYGSGRLSDPSVIADAISKAVT 235 (273)
T ss_pred hhccccCCCHHHHHHHHHHHHh
Confidence 1123456789999999998865
|
|
| >COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.6e-17 Score=160.53 Aligned_cols=229 Identities=23% Similarity=0.205 Sum_probs=174.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCCCEE
Q 047227 8 RLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGAEVV 87 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~d~V 87 (485)
|+||||||||++|+++++.|+++| ++|++..|.+... ..+. .++++..+|+.++..+...++|.|.+
T Consensus 1 ~~ilV~GatG~~G~~~~~~L~~~~-~~v~~~~r~~~~~-----------~~~~-~~v~~~~~d~~~~~~l~~a~~G~~~~ 67 (275)
T COG0702 1 MKILVTGATGFVGGAVVRELLARG-HEVRAAVRNPEAA-----------AALA-GGVEVVLGDLRDPKSLVAGAKGVDGV 67 (275)
T ss_pred CeEEEEecccchHHHHHHHHHhCC-CEEEEEEeCHHHH-----------Hhhc-CCcEEEEeccCCHhHHHHHhccccEE
Confidence 589999999999999999999999 5999999886522 2222 68999999999999999999999999
Q ss_pred EEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCccccccCCCCcCCCCCCCCCCCCCCchHHHHHHHHH
Q 047227 88 FHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDFYSATKAEGE 167 (485)
Q Consensus 88 ih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy~~~~~~~~~~~e~~~~~~~~~~~Y~~sK~~~E 167 (485)
+++.+... ... ...........+..+++. .+++++++.|...+- ......|..+|..+|
T Consensus 68 ~~i~~~~~-~~~--~~~~~~~~~~~~~a~~a~-~~~~~~~~~s~~~~~-----------------~~~~~~~~~~~~~~e 126 (275)
T COG0702 68 LLISGLLD-GSD--AFRAVQVTAVVRAAEAAG-AGVKHGVSLSVLGAD-----------------AASPSALARAKAAVE 126 (275)
T ss_pred EEEecccc-ccc--chhHHHHHHHHHHHHHhc-CCceEEEEeccCCCC-----------------CCCccHHHHHHHHHH
Confidence 99998544 222 233444555555555555 457889998875441 134578999999999
Q ss_pred HHHHHHhCCCCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCceeecccHHHHHHHHHHHHHHhccccchh
Q 047227 168 ALVIKANGTNGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICAERALASEVTVA 247 (485)
Q Consensus 168 ~~~~~~~~~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~ 247 (485)
..+.. .|++.+++|++.+|....... .......+.+....+.+ ..+.+.++|++.++..++..
T Consensus 127 ~~l~~----sg~~~t~lr~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~--~~~~i~~~d~a~~~~~~l~~-------- 189 (275)
T COG0702 127 AALRS----SGIPYTTLRRAAFYLGAGAAF---IEAAEAAGLPVIPRGIG--RLSPIAVDDVAEALAAALDA-------- 189 (275)
T ss_pred HHHHh----cCCCeEEEecCeeeeccchhH---HHHHHhhCCceecCCCC--ceeeeEHHHHHHHHHHHhcC--------
Confidence 99998 689999999888776543322 22334445444444443 78999999999999988762
Q ss_pred hccCCcEEEeeCCCCccHHHHHHHHHHHcCCCCCCccCCH
Q 047227 248 EKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPA 287 (485)
Q Consensus 248 ~~~~g~~ynv~~~~~~t~~el~~~i~~~~g~~~~~~~~p~ 287 (485)
+...++.|.+++++..+..|..+.+.+..|++...+..+.
T Consensus 190 ~~~~~~~~~l~g~~~~~~~~~~~~l~~~~gr~~~~~~~~~ 229 (275)
T COG0702 190 PATAGRTYELAGPEALTLAELASGLDYTIGRPVGLIPEAL 229 (275)
T ss_pred CcccCcEEEccCCceecHHHHHHHHHHHhCCcceeeCCcH
Confidence 2356899999999999999999999999999887755443
|
|
| >PRK08063 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.7e-18 Score=162.72 Aligned_cols=219 Identities=16% Similarity=0.124 Sum_probs=150.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEE-eecCCccccCCccchhhhhhhh--cCCCeEEEEecCCCHHHHHHHhc
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRI-ADLSDSIALEPHEEQGILGEAL--RSGRAHYVSFDLRHKAQVLQALQ 82 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~-~~r~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~Dl~d~~~l~~~~~ 82 (485)
.++++|||||+|+||++++++|+++| ++|.+ ..|...... + ..... ...++.++.+|++|++++.++++
T Consensus 3 ~~~~vlItGa~g~iG~~~a~~l~~~g-~~v~~~~~r~~~~~~----~---~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 74 (250)
T PRK08063 3 SGKVALVTGSSRGIGKAIALRLAEEG-YDIAVNYARSRKAAE----E---TAEEIEALGRKALAVKANVGDVEKIKEMFA 74 (250)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCC-CEEEEEcCCCHHHHH----H---HHHHHHhcCCeEEEEEcCCCCHHHHHHHHH
Confidence 35799999999999999999999999 57665 344432110 0 11111 13468889999999998887775
Q ss_pred -------CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHHHh----cCCCEEEEecCccccccCCCCcCC
Q 047227 83 -------GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDACAE----LKVKRLIYTSSPSVVFDGVHGIIN 144 (485)
Q Consensus 83 -------~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~~~----~~v~r~V~~SS~~vy~~~~~~~~~ 144 (485)
++|+|||+++... ...+....+++|+.++.++++++.+ .+.++||++||...+.
T Consensus 75 ~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~-------- 146 (250)
T PRK08063 75 QIDEEFGRLDVFVNNAASGVLRPAMELEESHWDWTMNINAKALLFCAQEAAKLMEKVGGGKIISLSSLGSIR-------- 146 (250)
T ss_pred HHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEEcchhhcc--------
Confidence 4899999998321 1112344678999999999888875 3456999999965542
Q ss_pred CCCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCC--hHHHHHHHHcCCCeEEecCCCc
Q 047227 145 GNEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLL--VPSLVAAARAGKSKFIIGDGNN 219 (485)
Q Consensus 145 ~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~--~~~~~~~~~~g~~~~~~g~g~~ 219 (485)
+..+...|+.+|...|.+++.++.+ .++++++++|+.+..+..... ...+........ .
T Consensus 147 -------~~~~~~~y~~sK~a~~~~~~~~~~~~~~~~i~v~~i~pg~v~t~~~~~~~~~~~~~~~~~~~~---------~ 210 (250)
T PRK08063 147 -------YLENYTTVGVSKAALEALTRYLAVELAPKGIAVNAVSGGAVDTDALKHFPNREELLEDARAKT---------P 210 (250)
T ss_pred -------CCCCccHHHHHHHHHHHHHHHHHHHHhHhCeEEEeEecCcccCchhhhccCchHHHHHHhcCC---------C
Confidence 1234568999999999999887643 589999999999987643211 011221111111 1
Q ss_pred eeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCCC
Q 047227 220 VYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMES 262 (485)
Q Consensus 220 ~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~ 262 (485)
...+++++|+|++++.++.... ....|+.+++.++..
T Consensus 211 ~~~~~~~~dva~~~~~~~~~~~------~~~~g~~~~~~gg~~ 247 (250)
T PRK08063 211 AGRMVEPEDVANAVLFLCSPEA------DMIRGQTIIVDGGRS 247 (250)
T ss_pred CCCCcCHHHHHHHHHHHcCchh------cCccCCEEEECCCee
Confidence 1247889999999998865321 125688898887653
|
|
| >PRK06128 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=8.4e-18 Score=164.82 Aligned_cols=222 Identities=15% Similarity=0.120 Sum_probs=156.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhh--cCCCeEEEEecCCCHHHHHHHhc-
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEAL--RSGRAHYVSFDLRHKAQVLQALQ- 82 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~Dl~d~~~l~~~~~- 82 (485)
.+|++|||||+|+||+++++.|.++| ++|.+..+..... ..++ ....+ ...++.++.+|++|.+++.++++
T Consensus 54 ~~k~vlITGas~gIG~~~a~~l~~~G-~~V~i~~~~~~~~--~~~~---~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~ 127 (300)
T PRK06128 54 QGRKALITGADSGIGRATAIAFAREG-ADIALNYLPEEEQ--DAAE---VVQLIQAEGRKAVALPGDLKDEAFCRQLVER 127 (300)
T ss_pred CCCEEEEecCCCcHHHHHHHHHHHcC-CEEEEEeCCcchH--HHHH---HHHHHHHcCCeEEEEecCCCCHHHHHHHHHH
Confidence 45899999999999999999999999 5887776543211 0000 11111 13467889999999988877764
Q ss_pred ------CCCEEEEcCCCCC--------CCCchhhhHHHHHHHHHHHHHHHHhc--CCCEEEEecCccccccCCCCcCCCC
Q 047227 83 ------GAEVVFHMAAPNS--------SINNHKLHHSVNVEGTKNVIDACAEL--KVKRLIYTSSPSVVFDGVHGIINGN 146 (485)
Q Consensus 83 ------~~d~Vih~aa~~~--------~~~~~~~~~~~nv~~t~~ll~a~~~~--~v~r~V~~SS~~vy~~~~~~~~~~~ 146 (485)
++|+|||+|+... +.+++...+++|+.++.++++++... .-.++|++||...|..
T Consensus 128 ~~~~~g~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~~sS~~~~~~--------- 198 (300)
T PRK06128 128 AVKELGGLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPPGASIINTGSIQSYQP--------- 198 (300)
T ss_pred HHHHhCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCcCCEEEEECCccccCC---------
Confidence 5899999999321 23466789999999999999999754 2258999999887631
Q ss_pred CCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCC--ChHHHHHHHHcCCCeEEecCCCcee
Q 047227 147 EALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRL--LVPSLVAAARAGKSKFIIGDGNNVY 221 (485)
Q Consensus 147 e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~--~~~~~~~~~~~g~~~~~~g~g~~~~ 221 (485)
......|+.+|...+.+++.++.+ .|+++.+++||.+.+|.... ............ ....
T Consensus 199 ------~~~~~~Y~asK~a~~~~~~~la~el~~~gI~v~~v~PG~i~t~~~~~~~~~~~~~~~~~~~---------~p~~ 263 (300)
T PRK06128 199 ------SPTLLDYASTKAAIVAFTKALAKQVAEKGIRVNAVAPGPVWTPLQPSGGQPPEKIPDFGSE---------TPMK 263 (300)
T ss_pred ------CCCchhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEECcCcCCCcccCCCCHHHHHHHhcC---------CCCC
Confidence 223457999999999999887754 58999999999999885321 112222222211 1223
Q ss_pred ecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCCCc
Q 047227 222 DFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMESI 263 (485)
Q Consensus 222 ~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~~ 263 (485)
.+.+.+|+|.+++.++.... .-..|+.|++.++..+
T Consensus 264 r~~~p~dva~~~~~l~s~~~------~~~~G~~~~v~gg~~~ 299 (300)
T PRK06128 264 RPGQPVEMAPLYVLLASQES------SYVTGEVFGVTGGLLL 299 (300)
T ss_pred CCcCHHHHHHHHHHHhCccc------cCccCcEEeeCCCEeC
Confidence 46789999999988754211 1246889999887544
|
|
| >PRK08213 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.2e-18 Score=162.66 Aligned_cols=221 Identities=15% Similarity=0.081 Sum_probs=155.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhh--cCCCeEEEEecCCCHHHHHHHhc-
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEAL--RSGRAHYVSFDLRHKAQVLQALQ- 82 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~Dl~d~~~l~~~~~- 82 (485)
+++++|||||+|+||+++++.|+++| ++|++++|....... ....+ ...++.++.+|++|++++.++++
T Consensus 11 ~~k~ilItGa~g~IG~~la~~l~~~G-~~V~~~~r~~~~~~~-------~~~~i~~~~~~~~~~~~Dl~d~~~i~~~~~~ 82 (259)
T PRK08213 11 SGKTALVTGGSRGLGLQIAEALGEAG-ARVVLSARKAEELEE-------AAAHLEALGIDALWIAADVADEADIERLAEE 82 (259)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcC-CEEEEEeCCHHHHHH-------HHHHHHhcCCeEEEEEccCCCHHHHHHHHHH
Confidence 56899999999999999999999999 589998886431110 11111 13467889999999998866653
Q ss_pred ------CCCEEEEcCCCC-------CCCCchhhhHHHHHHHHHHHHHHHHhc-----CCCEEEEecCccccccCCCCcCC
Q 047227 83 ------GAEVVFHMAAPN-------SSINNHKLHHSVNVEGTKNVIDACAEL-----KVKRLIYTSSPSVVFDGVHGIIN 144 (485)
Q Consensus 83 ------~~d~Vih~aa~~-------~~~~~~~~~~~~nv~~t~~ll~a~~~~-----~v~r~V~~SS~~vy~~~~~~~~~ 144 (485)
+.|+|||+|+.. ...+.+...+++|+.++.++++++... +.+++|++||...+.+...
T Consensus 83 ~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~l~~~~~~~~v~~sS~~~~~~~~~---- 158 (259)
T PRK08213 83 TLERFGHVDILVNNAGATWGAPAEDHPVEAWDKVMNLNVRGLFLLSQAVAKRSMIPRGYGRIINVASVAGLGGNPP---- 158 (259)
T ss_pred HHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHHhcCCeEEEEECChhhccCCCc----
Confidence 489999999832 122244567889999999999988654 5679999999766532110
Q ss_pred CCCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCcee
Q 047227 145 GNEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVY 221 (485)
Q Consensus 145 ~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~~ 221 (485)
...+...|+.+|+..|.+++.++++ .++++.+++|+.+-.+.....++.+......+.+...
T Consensus 159 -------~~~~~~~Y~~sKa~~~~~~~~~a~~~~~~gi~v~~v~Pg~~~t~~~~~~~~~~~~~~~~~~~~~~-------- 223 (259)
T PRK08213 159 -------EVMDTIAYNTSKGAVINFTRALAAEWGPHGIRVNAIAPGFFPTKMTRGTLERLGEDLLAHTPLGR-------- 223 (259)
T ss_pred -------cccCcchHHHHHHHHHHHHHHHHHHhcccCEEEEEEecCcCCCcchhhhhHHHHHHHHhcCCCCC--------
Confidence 0124578999999999999887653 5799999999988776544445555544444333222
Q ss_pred ecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCC
Q 047227 222 DFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNM 260 (485)
Q Consensus 222 ~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~ 260 (485)
+...+|+|++...++.... ....|+.+++.++
T Consensus 224 -~~~~~~va~~~~~l~~~~~------~~~~G~~~~~~~~ 255 (259)
T PRK08213 224 -LGDDEDLKGAALLLASDAS------KHITGQILAVDGG 255 (259)
T ss_pred -CcCHHHHHHHHHHHhCccc------cCccCCEEEECCC
Confidence 3457999998887754211 1256788877764
|
|
| >PRK09186 flagellin modification protein A; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.8e-18 Score=163.23 Aligned_cols=227 Identities=17% Similarity=0.154 Sum_probs=148.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcC--
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQG-- 83 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~-- 83 (485)
++|++|||||+|+||+++++.|.++| ++|++++|........... +........+.++.+|+.|++++.+++++
T Consensus 3 ~~k~vlItGas~giG~~~a~~l~~~g-~~v~~~~r~~~~~~~~~~~---l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~ 78 (256)
T PRK09186 3 KGKTILITGAGGLIGSALVKAILEAG-GIVIAADIDKEALNELLES---LGKEFKSKKLSLVELDITDQESLEEFLSKSA 78 (256)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEecChHHHHHHHHH---HHhhcCCCceeEEEecCCCHHHHHHHHHHHH
Confidence 35899999999999999999999999 5888888764321100000 11111123566789999999988887753
Q ss_pred -----CCEEEEcCCCCC----------CCCchhhhHHHHHHHHHHHHHH----HHhcCCCEEEEecCccccccCCCCcCC
Q 047227 84 -----AEVVFHMAAPNS----------SINNHKLHHSVNVEGTKNVIDA----CAELKVKRLIYTSSPSVVFDGVHGIIN 144 (485)
Q Consensus 84 -----~d~Vih~aa~~~----------~~~~~~~~~~~nv~~t~~ll~a----~~~~~v~r~V~~SS~~vy~~~~~~~~~ 144 (485)
+|+|||+|+... +.......+++|+.++..+.++ +++.+.+++|++||...+.+....
T Consensus 79 ~~~~~id~vi~~A~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~--- 155 (256)
T PRK09186 79 EKYGKIDGAVNCAYPRNKDYGKKFFDVSLDDFNENLSLHLGSSFLFSQQFAKYFKKQGGGNLVNISSIYGVVAPKFE--- 155 (256)
T ss_pred HHcCCccEEEECCccccccccCccccCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCceEEEEechhhhccccch---
Confidence 799999997321 1123456678888777666554 445567799999996654321111
Q ss_pred CCCCCCCCCCCCchHHHHHHHHHHHHHHHhC---CCCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCcee
Q 047227 145 GNEALPYPPKHNDFYSATKAEGEALVIKANG---TNGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVY 221 (485)
Q Consensus 145 ~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~---~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~~ 221 (485)
..+.. +......|+.+|...|.+.+.++. ..++++++++|+.++++.. ..+........ ...
T Consensus 156 ~~~~~--~~~~~~~Y~~sK~a~~~l~~~la~e~~~~~i~v~~i~Pg~~~~~~~----~~~~~~~~~~~---------~~~ 220 (256)
T PRK09186 156 IYEGT--SMTSPVEYAAIKAGIIHLTKYLAKYFKDSNIRVNCVSPGGILDNQP----EAFLNAYKKCC---------NGK 220 (256)
T ss_pred hcccc--ccCCcchhHHHHHHHHHHHHHHHHHhCcCCeEEEEEecccccCCCC----HHHHHHHHhcC---------Ccc
Confidence 11111 122334799999999999876654 3689999999999886542 12222222211 112
Q ss_pred ecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCC
Q 047227 222 DFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNM 260 (485)
Q Consensus 222 ~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~ 260 (485)
.+++++|+|++++.++..... ...|+.+.+.++
T Consensus 221 ~~~~~~dva~~~~~l~~~~~~------~~~g~~~~~~~g 253 (256)
T PRK09186 221 GMLDPDDICGTLVFLLSDQSK------YITGQNIIVDDG 253 (256)
T ss_pred CCCCHHHhhhhHhheeccccc------cccCceEEecCC
Confidence 478999999999988753221 245777777665
|
|
| >PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.79 E-value=7.6e-18 Score=160.73 Aligned_cols=219 Identities=18% Similarity=0.060 Sum_probs=154.0
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcC-
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQG- 83 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~- 83 (485)
.++|++|||||+|+||+++++.|+++| ++|.+++|... . ....++..+.+|+.|.+++.+++++
T Consensus 6 ~~~k~vlItGas~~iG~~la~~l~~~G-~~v~~~~~~~~------~--------~~~~~~~~~~~D~~~~~~~~~~~~~~ 70 (252)
T PRK08220 6 FSGKTVWVTGAAQGIGYAVALAFVEAG-AKVIGFDQAFL------T--------QEDYPFATFVLDVSDAAAVAQVCQRL 70 (252)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCC-CEEEEEecchh------h--------hcCCceEEEEecCCCHHHHHHHHHHH
Confidence 456899999999999999999999999 68988887641 0 1134688899999999988887753
Q ss_pred ------CCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHHHh----cCCCEEEEecCccccccCCCCcCCCC
Q 047227 84 ------AEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDACAE----LKVKRLIYTSSPSVVFDGVHGIINGN 146 (485)
Q Consensus 84 ------~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~~~----~~v~r~V~~SS~~vy~~~~~~~~~~~ 146 (485)
+|+|||+++... +.+++...+++|+.++.++++++.. .+..++|++||.....
T Consensus 71 ~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~~ss~~~~~---------- 140 (252)
T PRK08220 71 LAETGPLDVLVNAAGILRMGATDSLSDEDWQQTFAVNAGGAFNLFRAVMPQFRRQRSGAIVTVGSNAAHV---------- 140 (252)
T ss_pred HHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCEEEEECCchhcc----------
Confidence 799999999322 2335677899999999999988753 3456899999965431
Q ss_pred CCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCChHH-H-HHHHHcCCCeEEecCCCcee
Q 047227 147 EALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLLVPS-L-VAAARAGKSKFIIGDGNNVY 221 (485)
Q Consensus 147 e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~~~~-~-~~~~~~g~~~~~~g~g~~~~ 221 (485)
+..+.+.|+.+|...|.+++.++.+ +++++++++|+.++++........ . ......+.. ..........
T Consensus 141 -----~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~i~pg~v~t~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 214 (252)
T PRK08220 141 -----PRIGMAAYGASKAALTSLAKCVGLELAPYGVRCNVVSPGSTDTDMQRTLWVDEDGEQQVIAGFP-EQFKLGIPLG 214 (252)
T ss_pred -----CCCCCchhHHHHHHHHHHHHHHHHHhhHhCeEEEEEecCcCcchhhhhhccchhhhhhhhhhHH-HHHhhcCCCc
Confidence 2345678999999999999887754 689999999999998853211100 0 000000000 0000112335
Q ss_pred ecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCC
Q 047227 222 DFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNM 260 (485)
Q Consensus 222 ~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~ 260 (485)
.+++++|+|++++.++.... ....|+...+.++
T Consensus 215 ~~~~~~dva~~~~~l~~~~~------~~~~g~~i~~~gg 247 (252)
T PRK08220 215 KIARPQEIANAVLFLASDLA------SHITLQDIVVDGG 247 (252)
T ss_pred ccCCHHHHHHHHHHHhcchh------cCccCcEEEECCC
Confidence 68999999999998875321 2255677666665
|
|
| >PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.4e-17 Score=158.14 Aligned_cols=219 Identities=20% Similarity=0.163 Sum_probs=151.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhh--cCCCeEEEEecCCCHHHHHHHhc-
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEAL--RSGRAHYVSFDLRHKAQVLQALQ- 82 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~Dl~d~~~l~~~~~- 82 (485)
.++++|||||+|++|++++++|+++| ++|+++.+....... . ....+ ...++.++.+|+.|.+++.++++
T Consensus 4 ~~~~vlItG~sg~iG~~l~~~l~~~G-~~v~~~~~~~~~~~~---~---~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 76 (248)
T PRK05557 4 EGKVALVTGASRGIGRAIAERLAAQG-ANVVINYASSEAGAE---A---LVAEIGALGGKALAVQGDVSDAESVERAVDE 76 (248)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEeCCchhHHH---H---HHHHHHhcCCceEEEEcCCCCHHHHHHHHHH
Confidence 45799999999999999999999999 588777665431100 0 11111 23468889999999998877765
Q ss_pred ------CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHHHhc----CCCEEEEecCccccccCCCCcCCC
Q 047227 83 ------GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDACAEL----KVKRLIYTSSPSVVFDGVHGIING 145 (485)
Q Consensus 83 ------~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~~~~----~v~r~V~~SS~~vy~~~~~~~~~~ 145 (485)
++|+|||+++... ..+.+...+++|+.++.++++++... +.+++|++||...+..
T Consensus 77 ~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~iss~~~~~~-------- 148 (248)
T PRK05557 77 AKAEFGGVDILVNNAGITRDNLLMRMKEEDWDRVIDTNLTGVFNLTKAVARPMMKQRSGRIINISSVVGLMG-------- 148 (248)
T ss_pred HHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEEcccccCcC--------
Confidence 5899999999322 12244567889999999999888753 4578999999643321
Q ss_pred CCCCCCCCCCCchHHHHHHHHHHHHHHHhC---CCCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCceee
Q 047227 146 NEALPYPPKHNDFYSATKAEGEALVIKANG---TNGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYD 222 (485)
Q Consensus 146 ~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~---~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~ 222 (485)
......|+.+|...|.+++.++. ..+++++++||+.+.++......+.+........+ ...
T Consensus 149 -------~~~~~~y~~sk~a~~~~~~~~a~~~~~~~i~~~~v~pg~~~~~~~~~~~~~~~~~~~~~~~---------~~~ 212 (248)
T PRK05557 149 -------NPGQANYAASKAGVIGFTKSLARELASRGITVNAVAPGFIETDMTDALPEDVKEAILAQIP---------LGR 212 (248)
T ss_pred -------CCCCchhHHHHHHHHHHHHHHHHHhhhhCeEEEEEecCccCCccccccChHHHHHHHhcCC---------CCC
Confidence 12356799999999988877654 35799999999998665433333333333332221 123
Q ss_pred cccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCC
Q 047227 223 FTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNME 261 (485)
Q Consensus 223 ~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~ 261 (485)
+.+++|+|+++..++.... ....|+.|++.++.
T Consensus 213 ~~~~~~va~~~~~l~~~~~------~~~~g~~~~i~~~~ 245 (248)
T PRK05557 213 LGQPEEIASAVAFLASDEA------AYITGQTLHVNGGM 245 (248)
T ss_pred CcCHHHHHHHHHHHcCccc------CCccccEEEecCCc
Confidence 6789999999887754211 22568899998653
|
|
| >PRK06701 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.8e-18 Score=166.29 Aligned_cols=220 Identities=15% Similarity=0.102 Sum_probs=156.1
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhc--CCCeEEEEecCCCHHHHHHHhc
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALR--SGRAHYVSFDLRHKAQVLQALQ 82 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~Dl~d~~~l~~~~~ 82 (485)
.++|++|||||+|+||+++++.|+++| ++|.+++|...... .. ....+. ..++.++.+|++|.+++.++++
T Consensus 44 ~~~k~iLItGasggIG~~la~~l~~~G-~~V~l~~r~~~~~~---~~---~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 116 (290)
T PRK06701 44 LKGKVALITGGDSGIGRAVAVLFAKEG-ADIAIVYLDEHEDA---NE---TKQRVEKEGVKCLLIPGDVSDEAFCKDAVE 116 (290)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCCcchHH---HH---HHHHHHhcCCeEEEEEccCCCHHHHHHHHH
Confidence 346899999999999999999999999 68888887643111 01 111111 2467889999999998877764
Q ss_pred -------CCCEEEEcCCCCC--------CCCchhhhHHHHHHHHHHHHHHHHhc--CCCEEEEecCccccccCCCCcCCC
Q 047227 83 -------GAEVVFHMAAPNS--------SINNHKLHHSVNVEGTKNVIDACAEL--KVKRLIYTSSPSVVFDGVHGIING 145 (485)
Q Consensus 83 -------~~d~Vih~aa~~~--------~~~~~~~~~~~nv~~t~~ll~a~~~~--~v~r~V~~SS~~vy~~~~~~~~~~ 145 (485)
++|+|||+|+... +.+++...+++|+.++.++++++... ...++|++||...|..
T Consensus 117 ~i~~~~~~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~isS~~~~~~-------- 188 (290)
T PRK06701 117 ETVRELGRLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINTGSITGYEG-------- 188 (290)
T ss_pred HHHHHcCCCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEEecccccCC--------
Confidence 4899999999321 11244678999999999999998763 2358999999877642
Q ss_pred CCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCC-hHHHHHHHHcCCCeEEecCCCcee
Q 047227 146 NEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLL-VPSLVAAARAGKSKFIIGDGNNVY 221 (485)
Q Consensus 146 ~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~-~~~~~~~~~~g~~~~~~g~g~~~~ 221 (485)
......|+.+|...+.+++.++.. .|+++++++|+.++.+..... ......... ......
T Consensus 189 -------~~~~~~Y~~sK~a~~~l~~~la~~~~~~gIrv~~i~pG~v~T~~~~~~~~~~~~~~~~---------~~~~~~ 252 (290)
T PRK06701 189 -------NETLIDYSATKGAIHAFTRSLAQSLVQKGIRVNAVAPGPIWTPLIPSDFDEEKVSQFG---------SNTPMQ 252 (290)
T ss_pred -------CCCcchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCCCCCcccccccCHHHHHHHH---------hcCCcC
Confidence 122357999999999999888765 489999999999988743211 111121111 112234
Q ss_pred ecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCC
Q 047227 222 DFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNME 261 (485)
Q Consensus 222 ~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~ 261 (485)
.+.+++|+|++++.++..... ...|..+++.++.
T Consensus 253 ~~~~~~dva~~~~~ll~~~~~------~~~G~~i~idgg~ 286 (290)
T PRK06701 253 RPGQPEELAPAYVFLASPDSS------YITGQMLHVNGGV 286 (290)
T ss_pred CCcCHHHHHHHHHHHcCcccC------CccCcEEEeCCCc
Confidence 588999999999988663222 2568888887754
|
|
| >PRK06123 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=9e-18 Score=159.83 Aligned_cols=217 Identities=18% Similarity=0.151 Sum_probs=147.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhh--cCCCeEEEEecCCCHHHHHHHhc---
Q 047227 8 RLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEAL--RSGRAHYVSFDLRHKAQVLQALQ--- 82 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~Dl~d~~~l~~~~~--- 82 (485)
+.+|||||+|+||.+++++|+++| +.|.+..+.+.... .. ....+ ...++.++.+|++|.+++.++++
T Consensus 3 ~~~lVtG~~~~iG~~~a~~l~~~G-~~vv~~~~~~~~~~---~~---~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 75 (248)
T PRK06123 3 KVMIITGASRGIGAATALLAAERG-YAVCLNYLRNRDAA---EA---VVQAIRRQGGEALAVAADVADEADVLRLFEAVD 75 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCC-CeEEEecCCCHHHH---HH---HHHHHHhCCCcEEEEEeccCCHHHHHHHHHHHH
Confidence 689999999999999999999999 57766654321100 00 11111 12457889999999998888775
Q ss_pred ----CCCEEEEcCCCCC--------CCCchhhhHHHHHHHHHHHHHHHHhcC-------CCEEEEecCccccccCCCCcC
Q 047227 83 ----GAEVVFHMAAPNS--------SINNHKLHHSVNVEGTKNVIDACAELK-------VKRLIYTSSPSVVFDGVHGII 143 (485)
Q Consensus 83 ----~~d~Vih~aa~~~--------~~~~~~~~~~~nv~~t~~ll~a~~~~~-------v~r~V~~SS~~vy~~~~~~~~ 143 (485)
.+|+|||+|+... ..+++...+++|+.++.++++++.+.- -.++|++||...+...
T Consensus 76 ~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~----- 150 (248)
T PRK06123 76 RELGRLDALVNNAGILEAQMRLEQMDAARLTRIFATNVVGSFLCAREAVKRMSTRHGGRGGAIVNVSSMAARLGS----- 150 (248)
T ss_pred HHhCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCCeEEEEECchhhcCCC-----
Confidence 4899999999432 112445779999999999988876531 2369999997554211
Q ss_pred CCCCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCC-CChHHHHHHHHcCCCeEEecCCCc
Q 047227 144 NGNEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDR-LLVPSLVAAARAGKSKFIIGDGNN 219 (485)
Q Consensus 144 ~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~-~~~~~~~~~~~~g~~~~~~g~g~~ 219 (485)
......|+.+|...|.+++.++.+ ++++++++||+.+++|... ...+..........+.
T Consensus 151 ---------~~~~~~Y~~sKaa~~~~~~~la~~~~~~~i~v~~i~pg~v~~~~~~~~~~~~~~~~~~~~~p~-------- 213 (248)
T PRK06123 151 ---------PGEYIDYAASKGAIDTMTIGLAKEVAAEGIRVNAVRPGVIYTEIHASGGEPGRVDRVKAGIPM-------- 213 (248)
T ss_pred ---------CCCccchHHHHHHHHHHHHHHHHHhcccCeEEEEEecCcccCchhhccCCHHHHHHHHhcCCC--------
Confidence 011235999999999998877643 5899999999999998532 2223333333332221
Q ss_pred eeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCC
Q 047227 220 VYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNM 260 (485)
Q Consensus 220 ~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~ 260 (485)
.-+.+++|++++++.++.... ....|+.|++.++
T Consensus 214 -~~~~~~~d~a~~~~~l~~~~~------~~~~g~~~~~~gg 247 (248)
T PRK06123 214 -GRGGTAEEVARAILWLLSDEA------SYTTGTFIDVSGG 247 (248)
T ss_pred -CCCcCHHHHHHHHHHHhCccc------cCccCCEEeecCC
Confidence 113468999999998765211 1256889998764
|
|
| >PRK05717 oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.2e-17 Score=159.89 Aligned_cols=217 Identities=20% Similarity=0.190 Sum_probs=149.8
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc--
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ-- 82 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 82 (485)
.++++++||||+|+||+++++.|+++| ++|.++++....... ..... ..++.++.+|++|.+++.++++
T Consensus 8 ~~~k~vlItG~sg~IG~~~a~~l~~~g-~~v~~~~~~~~~~~~-------~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~ 78 (255)
T PRK05717 8 HNGRVALVTGAARGIGLGIAAWLIAEG-WQVVLADLDRERGSK-------VAKAL-GENAWFIAMDVADEAQVAAGVAEV 78 (255)
T ss_pred cCCCEEEEeCCcchHHHHHHHHHHHcC-CEEEEEcCCHHHHHH-------HHHHc-CCceEEEEccCCCHHHHHHHHHHH
Confidence 457899999999999999999999999 689888775431110 11111 2467899999999988766543
Q ss_pred -----CCCEEEEcCCCCC---------CCCchhhhHHHHHHHHHHHHHHHHhc---CCCEEEEecCccccccCCCCcCCC
Q 047227 83 -----GAEVVFHMAAPNS---------SINNHKLHHSVNVEGTKNVIDACAEL---KVKRLIYTSSPSVVFDGVHGIING 145 (485)
Q Consensus 83 -----~~d~Vih~aa~~~---------~~~~~~~~~~~nv~~t~~ll~a~~~~---~v~r~V~~SS~~vy~~~~~~~~~~ 145 (485)
++|+|||+|+... +.+++...+++|+.++.++++++... ...++|++||...+..
T Consensus 79 ~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~g~ii~~sS~~~~~~-------- 150 (255)
T PRK05717 79 LGQFGRLDALVCNAAIADPHNTTLESLSLAHWNRVLAVNLTGPMLLAKHCAPYLRAHNGAIVNLASTRARQS-------- 150 (255)
T ss_pred HHHhCCCCEEEECCCcccCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCcEEEEEcchhhcCC--------
Confidence 3799999999322 12345678999999999999999642 2358999998765421
Q ss_pred CCCCCCCCCCCchHHHHHHHHHHHHHHHhCCC--CceEEEEecCCcccCCCCCC-hHHHHHHHHcCCCeEEecCCCceee
Q 047227 146 NEALPYPPKHNDFYSATKAEGEALVIKANGTN--GLLTCCIRPSSIFGPGDRLL-VPSLVAAARAGKSKFIIGDGNNVYD 222 (485)
Q Consensus 146 ~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~--g~~~~ilRp~~v~Gp~~~~~-~~~~~~~~~~g~~~~~~g~g~~~~~ 222 (485)
....+.|+.+|+..|.+++.++.++ ++++.+++|+.+.++..... ...+..... ... ....
T Consensus 151 -------~~~~~~Y~~sKaa~~~~~~~la~~~~~~i~v~~i~Pg~i~t~~~~~~~~~~~~~~~~-~~~--------~~~~ 214 (255)
T PRK05717 151 -------EPDTEAYAASKGGLLALTHALAISLGPEIRVNAVSPGWIDARDPSQRRAEPLSEADH-AQH--------PAGR 214 (255)
T ss_pred -------CCCCcchHHHHHHHHHHHHHHHHHhcCCCEEEEEecccCcCCccccccchHHHHHHh-hcC--------CCCC
Confidence 1234679999999999998877654 48999999999998753321 111111111 110 1124
Q ss_pred cccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCC
Q 047227 223 FTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNM 260 (485)
Q Consensus 223 ~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~ 260 (485)
+.+++|+|.++..++.... ....|+.+.+.++
T Consensus 215 ~~~~~~va~~~~~l~~~~~------~~~~g~~~~~~gg 246 (255)
T PRK05717 215 VGTVEDVAAMVAWLLSRQA------GFVTGQEFVVDGG 246 (255)
T ss_pred CcCHHHHHHHHHHHcCchh------cCccCcEEEECCC
Confidence 6789999999887764211 1245777777554
|
|
| >PRK06500 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.6e-17 Score=158.26 Aligned_cols=204 Identities=18% Similarity=0.140 Sum_probs=142.2
Q ss_pred CCCCCCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHH
Q 047227 1 MSGEENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQA 80 (485)
Q Consensus 1 M~~~~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~ 80 (485)
|+ ..++++++||||+|+||+++++.|+++| ++|++++|....... ..... ..++.++.+|+.|.+++.++
T Consensus 1 m~-~~~~k~vlItGasg~iG~~la~~l~~~g-~~v~~~~r~~~~~~~-------~~~~~-~~~~~~~~~D~~~~~~~~~~ 70 (249)
T PRK06500 1 MS-RLQGKTALITGGTSGIGLETARQFLAEG-ARVAITGRDPASLEA-------ARAEL-GESALVIRADAGDVAAQKAL 70 (249)
T ss_pred CC-CCCCCEEEEeCCCchHHHHHHHHHHHCC-CEEEEecCCHHHHHH-------HHHHh-CCceEEEEecCCCHHHHHHH
Confidence 44 3456899999999999999999999999 689888875321100 11111 24678899999998876655
Q ss_pred hc-------CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHHHhc--CCCEEEEecCccccccCCCCcCC
Q 047227 81 LQ-------GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDACAEL--KVKRLIYTSSPSVVFDGVHGIIN 144 (485)
Q Consensus 81 ~~-------~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~~~~--~v~r~V~~SS~~vy~~~~~~~~~ 144 (485)
++ ++|+|||+|+... ..++++..+++|+.++.++++++... ...++|++||.....
T Consensus 71 ~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~i~~~S~~~~~-------- 142 (249)
T PRK06500 71 AQALAEAFGRLDAVFINAGVAKFAPLEDWDEAMFDRSFNTNVKGPYFLIQALLPLLANPASIVLNGSINAHI-------- 142 (249)
T ss_pred HHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEechHhcc--------
Confidence 43 5899999999321 22356678999999999999999752 234677777744321
Q ss_pred CCCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCC------CChHHHHHHHHcCCCeEEec
Q 047227 145 GNEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDR------LLVPSLVAAARAGKSKFIIG 215 (485)
Q Consensus 145 ~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~------~~~~~~~~~~~~g~~~~~~g 215 (485)
+....+.|+.+|...|.+++.++.+ .|++++++||+.+++|... .....+...+..+.+.
T Consensus 143 -------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~---- 211 (249)
T PRK06500 143 -------GMPNSSVYAASKAALLSLAKTLSGELLPRGIRVNAVSPGPVQTPLYGKLGLPEATLDAVAAQIQALVPL---- 211 (249)
T ss_pred -------CCCCccHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcCCCHHHHhhccCccchHHHHHHHHhcCCC----
Confidence 1124568999999999999777643 4899999999999987321 1223333333333221
Q ss_pred CCCceeecccHHHHHHHHHHHHH
Q 047227 216 DGNNVYDFTYVANVAHAHICAER 238 (485)
Q Consensus 216 ~g~~~~~~i~v~D~a~a~~~~~~ 238 (485)
.-+..++|+|+++..++.
T Consensus 212 -----~~~~~~~~va~~~~~l~~ 229 (249)
T PRK06500 212 -----GRFGTPEEIAKAVLYLAS 229 (249)
T ss_pred -----CCCcCHHHHHHHHHHHcC
Confidence 124578999999998754
|
|
| >PRK06523 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.2e-17 Score=157.23 Aligned_cols=220 Identities=15% Similarity=0.096 Sum_probs=152.7
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc-
Q 047227 4 EENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ- 82 (485)
Q Consensus 4 ~~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~- 82 (485)
..++|++|||||+|.||+++++.|.++| ++|.+++|..... ...++.++.+|+.|++++.++++
T Consensus 6 ~~~~k~vlItGas~gIG~~ia~~l~~~G-~~v~~~~r~~~~~--------------~~~~~~~~~~D~~~~~~~~~~~~~ 70 (260)
T PRK06523 6 ELAGKRALVTGGTKGIGAATVARLLEAG-ARVVTTARSRPDD--------------LPEGVEFVAADLTTAEGCAAVARA 70 (260)
T ss_pred CCCCCEEEEECCCCchhHHHHHHHHHCC-CEEEEEeCChhhh--------------cCCceeEEecCCCCHHHHHHHHHH
Confidence 4567899999999999999999999999 6899998864311 12357889999999987776543
Q ss_pred ------CCCEEEEcCCCC---------CCCCchhhhHHHHHHHHHHHHHHH----HhcCCCEEEEecCccccccCCCCcC
Q 047227 83 ------GAEVVFHMAAPN---------SSINNHKLHHSVNVEGTKNVIDAC----AELKVKRLIYTSSPSVVFDGVHGII 143 (485)
Q Consensus 83 ------~~d~Vih~aa~~---------~~~~~~~~~~~~nv~~t~~ll~a~----~~~~v~r~V~~SS~~vy~~~~~~~~ 143 (485)
+.|+|||+|+.. ...++++..+++|+.++.++.+++ ++.+.+++|++||...+..
T Consensus 71 ~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~ii~isS~~~~~~------ 144 (260)
T PRK06523 71 VLERLGGVDILVHVLGGSSAPAGGFAALTDEEWQDELNLNLLAAVRLDRALLPGMIARGSGVIIHVTSIQRRLP------ 144 (260)
T ss_pred HHHHcCCCCEEEECCcccccCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCcEEEEEecccccCC------
Confidence 489999999832 122356778899999998776554 4455678999999765421
Q ss_pred CCCCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCChHHH-----------HHHHHcCC
Q 047227 144 NGNEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLLVPSL-----------VAAARAGK 209 (485)
Q Consensus 144 ~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~~~~~-----------~~~~~~g~ 209 (485)
...+...|+.+|...|.+.+.++.+ .|+++.+++||.+.++........+ ...+....
T Consensus 145 --------~~~~~~~Y~~sK~a~~~l~~~~a~~~~~~gi~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (260)
T PRK06523 145 --------LPESTTAYAAAKAALSTYSKSLSKEVAPKGVRVNTVSPGWIETEAAVALAERLAEAAGTDYEGAKQIIMDSL 216 (260)
T ss_pred --------CCCCcchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCcccCccHHHHHHHHHhhcCCCHHHHHHHHHHHh
Confidence 0124568999999999998887643 5799999999999887532111111 00000000
Q ss_pred CeEEecCCCceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCCCcc
Q 047227 210 SKFIIGDGNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMESIK 264 (485)
Q Consensus 210 ~~~~~g~g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~~t 264 (485)
.+.....+..++|+|+++..++.... ....|+.+.+.++...+
T Consensus 217 ------~~~p~~~~~~~~~va~~~~~l~s~~~------~~~~G~~~~vdgg~~~~ 259 (260)
T PRK06523 217 ------GGIPLGRPAEPEEVAELIAFLASDRA------ASITGTEYVIDGGTVPT 259 (260)
T ss_pred ------ccCccCCCCCHHHHHHHHHHHhCccc------ccccCceEEecCCccCC
Confidence 00111235578999999988865221 22668888888775443
|
|
| >PRK08324 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.77 E-value=9.2e-18 Score=181.81 Aligned_cols=228 Identities=22% Similarity=0.208 Sum_probs=160.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhc-CCCeEEEEecCCCHHHHHHHhc--
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALR-SGRAHYVSFDLRHKAQVLQALQ-- 82 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~Dl~d~~~l~~~~~-- 82 (485)
.++++|||||+|+||+++++.|.++| ++|++++|....... ....+. ..++..+.+|++|++++.++++
T Consensus 421 ~gk~vLVTGasggIG~~la~~L~~~G-a~Vvl~~r~~~~~~~-------~~~~l~~~~~v~~v~~Dvtd~~~v~~~~~~~ 492 (681)
T PRK08324 421 AGKVALVTGAAGGIGKATAKRLAAEG-ACVVLADLDEEAAEA-------AAAELGGPDRALGVACDVTDEAAVQAAFEEA 492 (681)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCc-CEEEEEeCCHHHHHH-------HHHHHhccCcEEEEEecCCCHHHHHHHHHHH
Confidence 56899999999999999999999999 589999887532110 111111 1478899999999998877764
Q ss_pred -----CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHHH----hcCC-CEEEEecCccccccCCCCcCCC
Q 047227 83 -----GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDACA----ELKV-KRLIYTSSPSVVFDGVHGIING 145 (485)
Q Consensus 83 -----~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~~----~~~v-~r~V~~SS~~vy~~~~~~~~~~ 145 (485)
++|+|||+||... +..++...+++|+.++.++++++. +.+. .+||++||...+.
T Consensus 493 ~~~~g~iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~vsS~~~~~--------- 563 (681)
T PRK08324 493 ALAFGGVDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFIASKNAVN--------- 563 (681)
T ss_pred HHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEECCccccC---------
Confidence 5899999999322 223556788999999999977765 4443 6899999976653
Q ss_pred CCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcc-cCCCCCChHHHHHHHHcCCCeE----EecCC
Q 047227 146 NEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIF-GPGDRLLVPSLVAAARAGKSKF----IIGDG 217 (485)
Q Consensus 146 ~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~-Gp~~~~~~~~~~~~~~~g~~~~----~~g~g 217 (485)
+......|+.+|...|.+++.++.+ .|+++.+++|+.+| +++..............+.... .++++
T Consensus 564 ------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~Pg~v~~~t~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 637 (681)
T PRK08324 564 ------PGPNFGAYGAAKAAELHLVRQLALELGPDGIRVNGVNPDAVVRGSGIWTGEWIEARAAAYGLSEEELEEFYRAR 637 (681)
T ss_pred ------CCCCcHHHHHHHHHHHHHHHHHHHHhcccCeEEEEEeCceeecCCccccchhhhhhhhhccCChHHHHHHHHhc
Confidence 1234578999999999999987643 46999999999998 5542110000111111222111 23455
Q ss_pred CceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCCC
Q 047227 218 NNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMES 262 (485)
Q Consensus 218 ~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~ 262 (485)
...+++++++|+|+++..++... .....|+.|++.++..
T Consensus 638 ~~l~~~v~~~DvA~a~~~l~s~~------~~~~tG~~i~vdgG~~ 676 (681)
T PRK08324 638 NLLKREVTPEDVAEAVVFLASGL------LSKTTGAIITVDGGNA 676 (681)
T ss_pred CCcCCccCHHHHHHHHHHHhCcc------ccCCcCCEEEECCCch
Confidence 66778999999999999886311 2236788999988754
|
|
| >PRK12824 acetoacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.3e-17 Score=155.56 Aligned_cols=219 Identities=17% Similarity=0.156 Sum_probs=153.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhh-hcCCCeEEEEecCCCHHHHHHHhc----
Q 047227 8 RLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEA-LRSGRAHYVSFDLRHKAQVLQALQ---- 82 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~l~~~~~---- 82 (485)
+++|||||+|+||+++++.|.++| +.|++++|...... .. ..... ....++.++.+|++|.+++.++++
T Consensus 3 k~vlItG~s~~iG~~la~~l~~~g-~~vi~~~r~~~~~~---~~--~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~ 76 (245)
T PRK12824 3 KIALVTGAKRGIGSAIARELLNDG-YRVIATYFSGNDCA---KD--WFEEYGFTEDQVRLKELDVTDTEECAEALAEIEE 76 (245)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcC-CEEEEEeCCcHHHH---HH--HHHHhhccCCeEEEEEcCCCCHHHHHHHHHHHHH
Confidence 589999999999999999999999 68999888743100 00 11111 113468899999999998877764
Q ss_pred ---CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHH----HHHhcCCCEEEEecCccccccCCCCcCCCCCC
Q 047227 83 ---GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVID----ACAELKVKRLIYTSSPSVVFDGVHGIINGNEA 148 (485)
Q Consensus 83 ---~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~----a~~~~~v~r~V~~SS~~vy~~~~~~~~~~~e~ 148 (485)
++|+|||+++... ..++++.++++|+.++.++.+ .+++.+.+++|++||...+..
T Consensus 77 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~iss~~~~~~----------- 145 (245)
T PRK12824 77 EEGPVDILVNNAGITRDSVFKRMSHQEWNDVINTNLNSVFNVTQPLFAAMCEQGYGRIINISSVNGLKG----------- 145 (245)
T ss_pred HcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCeEEEEECChhhccC-----------
Confidence 3899999999321 233556788999999988854 446566789999999765521
Q ss_pred CCCCCCCCchHHHHHHHHHHHHHHHhC---CCCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCceeeccc
Q 047227 149 LPYPPKHNDFYSATKAEGEALVIKANG---TNGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFTY 225 (485)
Q Consensus 149 ~~~~~~~~~~Y~~sK~~~E~~~~~~~~---~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~ 225 (485)
......|+.+|...+.+++.++. ..++++++++|+.+.++......+.+........+ ...+..
T Consensus 146 ----~~~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~---------~~~~~~ 212 (245)
T PRK12824 146 ----QFGQTNYSAAKAGMIGFTKALASEGARYGITVNCIAPGYIATPMVEQMGPEVLQSIVNQIP---------MKRLGT 212 (245)
T ss_pred ----CCCChHHHHHHHHHHHHHHHHHHHHHHhCeEEEEEEEcccCCcchhhcCHHHHHHHHhcCC---------CCCCCC
Confidence 12345799999999988887764 35799999999999887543332333322222221 233556
Q ss_pred HHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCCC
Q 047227 226 VANVAHAHICAERALASEVTVAEKAAGQAYFVTNMES 262 (485)
Q Consensus 226 v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~ 262 (485)
++|+++++..++.... ....|+.+++.++..
T Consensus 213 ~~~va~~~~~l~~~~~------~~~~G~~~~~~~g~~ 243 (245)
T PRK12824 213 PEEIAAAVAFLVSEAA------GFITGETISINGGLY 243 (245)
T ss_pred HHHHHHHHHHHcCccc------cCccCcEEEECCCee
Confidence 8999999987764211 225789999988754
|
|
| >PLN02253 xanthoxin dehydrogenase | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.1e-17 Score=160.43 Aligned_cols=222 Identities=16% Similarity=0.155 Sum_probs=151.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc---
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ--- 82 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 82 (485)
++|++|||||+|+||+++++.|.++| ++|.+++|...... + .........++.++.+|++|.+++.++++
T Consensus 17 ~~k~~lItGas~gIG~~la~~l~~~G-~~v~~~~~~~~~~~----~--~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~ 89 (280)
T PLN02253 17 LGKVALVTGGATGIGESIVRLFHKHG-AKVCIVDLQDDLGQ----N--VCDSLGGEPNVCFFHCDVTVEDDVSRAVDFTV 89 (280)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcC-CEEEEEeCCHHHHH----H--HHHHhcCCCceEEEEeecCCHHHHHHHHHHHH
Confidence 46899999999999999999999999 68998887643110 0 11111112468899999999999888775
Q ss_pred ----CCCEEEEcCCCCC---------CCCchhhhHHHHHHHHHHHHHHHHhc----CCCEEEEecCccccccCCCCcCCC
Q 047227 83 ----GAEVVFHMAAPNS---------SINNHKLHHSVNVEGTKNVIDACAEL----KVKRLIYTSSPSVVFDGVHGIING 145 (485)
Q Consensus 83 ----~~d~Vih~aa~~~---------~~~~~~~~~~~nv~~t~~ll~a~~~~----~v~r~V~~SS~~vy~~~~~~~~~~ 145 (485)
++|+|||+||... +.++++..+++|+.++.++++++... +..++|++||......
T Consensus 90 ~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~ii~isS~~~~~~-------- 161 (280)
T PLN02253 90 DKFGTLDIMVNNAGLTGPPCPDIRNVELSEFEKVFDVNVKGVFLGMKHAARIMIPLKKGSIVSLCSVASAIG-------- 161 (280)
T ss_pred HHhCCCCEEEECCCcCCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCceEEEecChhhccc--------
Confidence 5899999999321 12346778999999999998887642 3357899888654310
Q ss_pred CCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCC------hHHHH----HHHHcCCCeE
Q 047227 146 NEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLL------VPSLV----AAARAGKSKF 212 (485)
Q Consensus 146 ~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~------~~~~~----~~~~~g~~~~ 212 (485)
......|+.+|...|.+.+.++.+ .++++.+++|+.+..+..... ..... .....+.+
T Consensus 162 -------~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 232 (280)
T PLN02253 162 -------GLGPHAYTGSKHAVLGLTRSVAAELGKHGIRVNCVSPYAVPTALALAHLPEDERTEDALAGFRAFAGKNAN-- 232 (280)
T ss_pred -------CCCCcccHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcccccccccccccccchhhhhhhhHHHhhcCCC--
Confidence 122357999999999999887754 479999999999977632110 01111 11111110
Q ss_pred EecCCCceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCCCc
Q 047227 213 IIGDGNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMESI 263 (485)
Q Consensus 213 ~~g~g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~~ 263 (485)
.....++++|+|+++..++... ..-..|+.+++.++...
T Consensus 233 ------l~~~~~~~~dva~~~~~l~s~~------~~~i~G~~i~vdgG~~~ 271 (280)
T PLN02253 233 ------LKGVELTVDDVANAVLFLASDE------ARYISGLNLMIDGGFTC 271 (280)
T ss_pred ------CcCCCCCHHHHHHHHHhhcCcc------cccccCcEEEECCchhh
Confidence 0123478999999999876421 11256788888776443
|
|
| >PRK07577 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=7.3e-17 Score=152.16 Aligned_cols=207 Identities=16% Similarity=0.011 Sum_probs=146.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc----
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ---- 82 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~---- 82 (485)
+|++|||||+|+||++++++|.++| ++|.+++|..... ...+++.+|++|.+++.++++
T Consensus 3 ~k~vlItG~s~~iG~~ia~~l~~~G-~~v~~~~r~~~~~----------------~~~~~~~~D~~~~~~~~~~~~~~~~ 65 (234)
T PRK07577 3 SRTVLVTGATKGIGLALSLRLANLG-HQVIGIARSAIDD----------------FPGELFACDLADIEQTAATLAQINE 65 (234)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHCC-CEEEEEeCCcccc----------------cCceEEEeeCCCHHHHHHHHHHHHH
Confidence 5799999999999999999999999 6899998865420 112578899999988877765
Q ss_pred --CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHH----HhcCCCEEEEecCccccccCCCCcCCCCCCC
Q 047227 83 --GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDAC----AELKVKRLIYTSSPSVVFDGVHGIINGNEAL 149 (485)
Q Consensus 83 --~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~----~~~~v~r~V~~SS~~vy~~~~~~~~~~~e~~ 149 (485)
+.|+|||+++... ...++...+++|+.++.++.+++ ++.+.+++|++||...|+
T Consensus 66 ~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~------------- 132 (234)
T PRK07577 66 IHPVDAIVNNVGIALPQPLGKIDLAALQDVYDLNVRAAVQVTQAFLEGMKLREQGRIVNICSRAIFG------------- 132 (234)
T ss_pred hCCCcEEEECCCCCCCCChHHCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEccccccC-------------
Confidence 5899999999422 22345667889999988776554 456678999999987653
Q ss_pred CCCCCCCchHHHHHHHHHHHHHHHhC---CCCceEEEEecCCcccCCCCCC---hHHHHHHHHcCCCeEEecCCCceeec
Q 047227 150 PYPPKHNDFYSATKAEGEALVIKANG---TNGLLTCCIRPSSIFGPGDRLL---VPSLVAAARAGKSKFIIGDGNNVYDF 223 (485)
Q Consensus 150 ~~~~~~~~~Y~~sK~~~E~~~~~~~~---~~g~~~~ilRp~~v~Gp~~~~~---~~~~~~~~~~g~~~~~~g~g~~~~~~ 223 (485)
......|+.+|...|.+.+.++. ..|++++++||+.+..+..... .+.......... .....
T Consensus 133 ---~~~~~~Y~~sK~a~~~~~~~~a~e~~~~gi~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~~---------~~~~~ 200 (234)
T PRK07577 133 ---ALDRTSYSAAKSALVGCTRTWALELAEYGITVNAVAPGPIETELFRQTRPVGSEEEKRVLASI---------PMRRL 200 (234)
T ss_pred ---CCCchHHHHHHHHHHHHHHHHHHHHHhhCcEEEEEecCcccCcccccccccchhHHHHHhhcC---------CCCCC
Confidence 12346899999999999887653 3589999999999987643211 111111111111 11124
Q ss_pred ccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCC
Q 047227 224 TYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNME 261 (485)
Q Consensus 224 i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~ 261 (485)
...+|+|++++.++.... ....|+.+.+.++.
T Consensus 201 ~~~~~~a~~~~~l~~~~~------~~~~g~~~~~~g~~ 232 (234)
T PRK07577 201 GTPEEVAAAIAFLLSDDA------GFITGQVLGVDGGG 232 (234)
T ss_pred cCHHHHHHHHHHHhCccc------CCccceEEEecCCc
Confidence 578999999998875321 12567888887654
|
|
| >PRK08628 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.8e-17 Score=158.82 Aligned_cols=223 Identities=19% Similarity=0.146 Sum_probs=155.9
Q ss_pred CCCCCCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhh-cCCCeEEEEecCCCHHHHHH
Q 047227 1 MSGEENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEAL-RSGRAHYVSFDLRHKAQVLQ 79 (485)
Q Consensus 1 M~~~~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~ 79 (485)
|+-+++++++|||||+|.||+++++.|+++| +.|++++|..... + ...... ...++.++.+|++|++++.+
T Consensus 1 ~~~~l~~~~ilItGasggiG~~la~~l~~~G-~~v~~~~r~~~~~----~---~~~~~~~~~~~~~~~~~D~~~~~~~~~ 72 (258)
T PRK08628 1 MDLNLKDKVVIVTGGASGIGAAISLRLAEEG-AIPVIFGRSAPDD----E---FAEELRALQPRAEFVQVDLTDDAQCRD 72 (258)
T ss_pred CCCCcCCCEEEEeCCCChHHHHHHHHHHHcC-CcEEEEcCChhhH----H---HHHHHHhcCCceEEEEccCCCHHHHHH
Confidence 5555677899999999999999999999999 6888888765421 0 111111 13468899999999998887
Q ss_pred Hhc-------CCCEEEEcCCCCC------CCCchhhhHHHHHHHHHHHHHHHHh---cCCCEEEEecCccccccCCCCcC
Q 047227 80 ALQ-------GAEVVFHMAAPNS------SINNHKLHHSVNVEGTKNVIDACAE---LKVKRLIYTSSPSVVFDGVHGII 143 (485)
Q Consensus 80 ~~~-------~~d~Vih~aa~~~------~~~~~~~~~~~nv~~t~~ll~a~~~---~~v~r~V~~SS~~vy~~~~~~~~ 143 (485)
+++ ++|+|||+++... ..++.+..+++|+.++.++.+++.+ .+.+++|++||...+.
T Consensus 73 ~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~------- 145 (258)
T PRK08628 73 AVEQTVAKFGRIDGLVNNAGVNDGVGLEAGREAFVASLERNLIHYYVMAHYCLPHLKASRGAIVNISSKTALT------- 145 (258)
T ss_pred HHHHHHHhcCCCCEEEECCcccCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhhccCcEEEEECCHHhcc-------
Confidence 775 4899999999321 1134566789999999999888754 2346899999976542
Q ss_pred CCCCCCCCCCCCCchHHHHHHHHHHHHHHHhC---CCCceEEEEecCCcccCCCCCChHH------HHHHHHcCCCeEEe
Q 047227 144 NGNEALPYPPKHNDFYSATKAEGEALVIKANG---TNGLLTCCIRPSSIFGPGDRLLVPS------LVAAARAGKSKFII 214 (485)
Q Consensus 144 ~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~---~~g~~~~ilRp~~v~Gp~~~~~~~~------~~~~~~~g~~~~~~ 214 (485)
+..+...|+.+|...|.+++.++. ..++++..++|+.++++.....+.. .........+
T Consensus 146 --------~~~~~~~Y~~sK~a~~~~~~~l~~e~~~~~i~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~---- 213 (258)
T PRK08628 146 --------GQGGTSGYAAAKGAQLALTREWAVALAKDGVRVNAVIPAEVMTPLYENWIATFDDPEAKLAAITAKIP---- 213 (258)
T ss_pred --------CCCCCchhHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCccCCHHHHHHhhhccCHHHHHHHHHhcCC----
Confidence 123456899999999999998764 3589999999999998742211110 1111111100
Q ss_pred cCCCceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCC
Q 047227 215 GDGNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNM 260 (485)
Q Consensus 215 g~g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~ 260 (485)
.+ ..++.++|+|++++.++.... ....|+.+.+.++
T Consensus 214 -~~---~~~~~~~dva~~~~~l~~~~~------~~~~g~~~~~~gg 249 (258)
T PRK08628 214 -LG---HRMTTAEEIADTAVFLLSERS------SHTTGQWLFVDGG 249 (258)
T ss_pred -cc---ccCCCHHHHHHHHHHHhChhh------ccccCceEEecCC
Confidence 01 246789999999998876322 2256778877654
|
|
| >PRK09134 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.6e-17 Score=156.73 Aligned_cols=222 Identities=16% Similarity=0.090 Sum_probs=151.9
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhh-hcCCCeEEEEecCCCHHHHHHHhc-
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEA-LRSGRAHYVSFDLRHKAQVLQALQ- 82 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~l~~~~~- 82 (485)
.++|++|||||+|+||+++++.|.++| +.|+++++...... .. ..... ....++.++.+|++|.+++.++++
T Consensus 7 ~~~k~vlItGas~giG~~la~~l~~~g-~~v~~~~~~~~~~~---~~--~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~ 80 (258)
T PRK09134 7 AAPRAALVTGAARRIGRAIALDLAAHG-FDVAVHYNRSRDEA---EA--LAAEIRALGRRAVALQADLADEAEVRALVAR 80 (258)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCCCHHHH---HH--HHHHHHhcCCeEEEEEcCCCCHHHHHHHHHH
Confidence 456899999999999999999999999 58877665422110 00 01111 113468889999999998887764
Q ss_pred ------CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHHHhcC----CCEEEEecCccccccCCCCcCCC
Q 047227 83 ------GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDACAELK----VKRLIYTSSPSVVFDGVHGIING 145 (485)
Q Consensus 83 ------~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~~~~~----v~r~V~~SS~~vy~~~~~~~~~~ 145 (485)
++|+|||+|+... ...++...+++|+.++.++++++.... -+++|++||...+.
T Consensus 81 ~~~~~~~iD~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~~s~~~~~--------- 151 (258)
T PRK09134 81 ASAALGPITLLVNNASLFEYDSAASFTRASWDRHMATNLRAPFVLAQAFARALPADARGLVVNMIDQRVWN--------- 151 (258)
T ss_pred HHHHcCCCCEEEECCcCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCceEEEECchhhcC---------
Confidence 3799999998321 223557789999999999999887642 35788888754432
Q ss_pred CCCCCCCCCCCchHHHHHHHHHHHHHHHhCCC--CceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCceeec
Q 047227 146 NEALPYPPKHNDFYSATKAEGEALVIKANGTN--GLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDF 223 (485)
Q Consensus 146 ~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~--g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~ 223 (485)
+......|+.+|...|.+.+.++... ++++++++||.+..+... ....+. ....+.+ .+ ..
T Consensus 152 ------~~p~~~~Y~~sK~a~~~~~~~la~~~~~~i~v~~i~PG~v~t~~~~-~~~~~~-~~~~~~~---~~------~~ 214 (258)
T PRK09134 152 ------LNPDFLSYTLSKAALWTATRTLAQALAPRIRVNAIGPGPTLPSGRQ-SPEDFA-RQHAATP---LG------RG 214 (258)
T ss_pred ------CCCCchHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecccccCCccc-ChHHHH-HHHhcCC---CC------CC
Confidence 11123579999999999998876543 389999999998764322 112222 2222211 11 24
Q ss_pred ccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCCCccHH
Q 047227 224 TYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMESIKFW 266 (485)
Q Consensus 224 i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~~t~~ 266 (485)
.+++|+|++++.+++. +...|+.|++.++..++++
T Consensus 215 ~~~~d~a~~~~~~~~~--------~~~~g~~~~i~gg~~~~~~ 249 (258)
T PRK09134 215 STPEEIAAAVRYLLDA--------PSVTGQMIAVDGGQHLAWL 249 (258)
T ss_pred cCHHHHHHHHHHHhcC--------CCcCCCEEEECCCeecccc
Confidence 6799999999998762 2356889999887655544
|
|
| >PRK06181 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.4e-17 Score=158.40 Aligned_cols=202 Identities=15% Similarity=0.109 Sum_probs=144.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhh-cCCCeEEEEecCCCHHHHHHHhc---
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEAL-RSGRAHYVSFDLRHKAQVLQALQ--- 82 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~--- 82 (485)
++++|||||+|+||+++++.|+++| ++|++++|....... ...... ...++.++.+|+.|.+++.++++
T Consensus 1 ~~~vlVtGasg~iG~~la~~l~~~g-~~Vi~~~r~~~~~~~------~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 73 (263)
T PRK06181 1 GKVVIITGASEGIGRALAVRLARAG-AQLVLAARNETRLAS------LAQELADHGGEALVVPTDVSDAEACERLIEAAV 73 (263)
T ss_pred CCEEEEecCCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHH------HHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHH
Confidence 3689999999999999999999999 689999886432110 011111 13468889999999998887765
Q ss_pred ----CCCEEEEcCCCCC--------CCCchhhhHHHHHHHHHHHHHHHHh---cCCCEEEEecCccccccCCCCcCCCCC
Q 047227 83 ----GAEVVFHMAAPNS--------SINNHKLHHSVNVEGTKNVIDACAE---LKVKRLIYTSSPSVVFDGVHGIINGNE 147 (485)
Q Consensus 83 ----~~d~Vih~aa~~~--------~~~~~~~~~~~nv~~t~~ll~a~~~---~~v~r~V~~SS~~vy~~~~~~~~~~~e 147 (485)
++|+|||+++... ..+.+...+++|+.++.++++.+.. .+.+++|++||...+.
T Consensus 74 ~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~iv~~sS~~~~~----------- 142 (263)
T PRK06181 74 ARFGGIDILVNNAGITMWSRFDELTDLSVFERVMRVNYLGAVYCTHAALPHLKASRGQIVVVSSLAGLT----------- 142 (263)
T ss_pred HHcCCCCEEEECCCcccccchhccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCEEEEEecccccC-----------
Confidence 5899999999322 1122456689999999999999853 2346899999987763
Q ss_pred CCCCCCCCCchHHHHHHHHHHHHHHHhC---CCCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCceeecc
Q 047227 148 ALPYPPKHNDFYSATKAEGEALVIKANG---TNGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFT 224 (485)
Q Consensus 148 ~~~~~~~~~~~Y~~sK~~~E~~~~~~~~---~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i 224 (485)
+..+...|+.+|...|.+.+.++. ..++++++++|+.+..+....... ..+.+. ...+....+++
T Consensus 143 ----~~~~~~~Y~~sK~~~~~~~~~l~~~~~~~~i~~~~i~pg~v~t~~~~~~~~------~~~~~~--~~~~~~~~~~~ 210 (263)
T PRK06181 143 ----GVPTRSGYAASKHALHGFFDSLRIELADDGVAVTVVCPGFVATDIRKRALD------GDGKPL--GKSPMQESKIM 210 (263)
T ss_pred ----CCCCccHHHHHHHHHHHHHHHHHHHhhhcCceEEEEecCccccCcchhhcc------cccccc--ccccccccCCC
Confidence 123457899999999999877653 358999999999988664221100 112211 11222334789
Q ss_pred cHHHHHHHHHHHHH
Q 047227 225 YVANVAHAHICAER 238 (485)
Q Consensus 225 ~v~D~a~a~~~~~~ 238 (485)
+++|+|+++..+++
T Consensus 211 ~~~dva~~i~~~~~ 224 (263)
T PRK06181 211 SAEECAEAILPAIA 224 (263)
T ss_pred CHHHHHHHHHHHhh
Confidence 99999999998876
|
|
| >PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=4e-17 Score=154.55 Aligned_cols=201 Identities=14% Similarity=0.096 Sum_probs=145.0
Q ss_pred CCCCCCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHH
Q 047227 1 MSGEENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQA 80 (485)
Q Consensus 1 M~~~~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~ 80 (485)
|+....+++++||||+|+||.+++++|+++| ++|++++|..........+ +. ....++.++.+|++|++++.++
T Consensus 1 ~~~~~~~~~vlVtG~sg~iG~~l~~~L~~~G-~~Vi~~~r~~~~~~~~~~~---~~--~~~~~~~~~~~D~~~~~~~~~~ 74 (239)
T PRK07666 1 MAQSLQGKNALITGAGRGIGRAVAIALAKEG-VNVGLLARTEENLKAVAEE---VE--AYGVKVVIATADVSDYEEVTAA 74 (239)
T ss_pred CCccCCCCEEEEEcCCchHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHH---HH--HhCCeEEEEECCCCCHHHHHHH
Confidence 5555566899999999999999999999999 5899998875321110000 11 1134688899999999988887
Q ss_pred hc-------CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHHHh----cCCCEEEEecCccccccCCCCc
Q 047227 81 LQ-------GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDACAE----LKVKRLIYTSSPSVVFDGVHGI 142 (485)
Q Consensus 81 ~~-------~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~~~----~~v~r~V~~SS~~vy~~~~~~~ 142 (485)
++ ++|+|||+++... ..++.+..+++|+.++.++.+++.. .+.+++|++||...+..
T Consensus 75 ~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~ss~~~~~~----- 149 (239)
T PRK07666 75 IEQLKNELGSIDILINNAGISKFGKFLELDPAEWEKIIQVNLMGVYYATRAVLPSMIERQSGDIINISSTAGQKG----- 149 (239)
T ss_pred HHHHHHHcCCccEEEEcCccccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCcEEEEEcchhhccC-----
Confidence 75 5899999999321 1233466789999999999888763 45678999999765531
Q ss_pred CCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhC---CCCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCc
Q 047227 143 INGNEALPYPPKHNDFYSATKAEGEALVIKANG---TNGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNN 219 (485)
Q Consensus 143 ~~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~---~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~ 219 (485)
..+...|+.+|...+.+++.++. ..+++++++||+.+.++..... ....+ +
T Consensus 150 ----------~~~~~~Y~~sK~a~~~~~~~~a~e~~~~gi~v~~v~pg~v~t~~~~~~------~~~~~-------~--- 203 (239)
T PRK07666 150 ----------AAVTSAYSASKFGVLGLTESLMQEVRKHNIRVTALTPSTVATDMAVDL------GLTDG-------N--- 203 (239)
T ss_pred ----------CCCCcchHHHHHHHHHHHHHHHHHhhccCcEEEEEecCcccCcchhhc------ccccc-------C---
Confidence 23456799999999988877653 3689999999999987632110 00001 1
Q ss_pred eeecccHHHHHHHHHHHHH
Q 047227 220 VYDFTYVANVAHAHICAER 238 (485)
Q Consensus 220 ~~~~i~v~D~a~a~~~~~~ 238 (485)
...++..+|+|+.+..++.
T Consensus 204 ~~~~~~~~~~a~~~~~~l~ 222 (239)
T PRK07666 204 PDKVMQPEDLAEFIVAQLK 222 (239)
T ss_pred CCCCCCHHHHHHHHHHHHh
Confidence 1245789999999998876
|
|
| >PRK06841 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=7.9e-17 Score=154.02 Aligned_cols=217 Identities=18% Similarity=0.188 Sum_probs=153.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc---
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ--- 82 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 82 (485)
.++++|||||+|+||+++++.|.++| ++|.+++|..... . ........++..+.+|++|++++.++++
T Consensus 14 ~~k~vlItGas~~IG~~la~~l~~~G-~~Vi~~~r~~~~~----~----~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 84 (255)
T PRK06841 14 SGKVAVVTGGASGIGHAIAELFAAKG-ARVALLDRSEDVA----E----VAAQLLGGNAKGLVCDVSDSQSVEAAVAAVI 84 (255)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCC-CEEEEEeCCHHHH----H----HHHHhhCCceEEEEecCCCHHHHHHHHHHHH
Confidence 46899999999999999999999999 5899988864311 0 1111223457789999999998877764
Q ss_pred ----CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHHHh----cCCCEEEEecCccccccCCCCcCCCCC
Q 047227 83 ----GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDACAE----LKVKRLIYTSSPSVVFDGVHGIINGNE 147 (485)
Q Consensus 83 ----~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~~~----~~v~r~V~~SS~~vy~~~~~~~~~~~e 147 (485)
+.|+|||+++... ...+....+++|+.++.++++++.. .+.+++|++||.....
T Consensus 85 ~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~----------- 153 (255)
T PRK06841 85 SAFGRIDILVNSAGVALLAPAEDVSEEDWDKTIDINLKGSFLMAQAVGRHMIAAGGGKIVNLASQAGVV----------- 153 (255)
T ss_pred HHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhcHHHHHHHHHHHHHHHhcCCceEEEEcchhhcc-----------
Confidence 4799999999322 1234556889999999999998765 3567999999965432
Q ss_pred CCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCChH-HHHHHHHcCCCeEEecCCCceeec
Q 047227 148 ALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLLVP-SLVAAARAGKSKFIIGDGNNVYDF 223 (485)
Q Consensus 148 ~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~~~-~~~~~~~~g~~~~~~g~g~~~~~~ 223 (485)
+......|+.+|...+.+.+.++.+ .|+++..++|+.+..+....... ......... .....+
T Consensus 154 ----~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~---------~~~~~~ 220 (255)
T PRK06841 154 ----ALERHVAYCASKAGVVGMTKVLALEWGPYGITVNAISPTVVLTELGKKAWAGEKGERAKKL---------IPAGRF 220 (255)
T ss_pred ----CCCCCchHHHHHHHHHHHHHHHHHHHHhhCeEEEEEEeCcCcCcccccccchhHHHHHHhc---------CCCCCC
Confidence 1223457999999999988887654 58999999999998764321111 111111111 122357
Q ss_pred ccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCC
Q 047227 224 TYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNME 261 (485)
Q Consensus 224 i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~ 261 (485)
.+++|+|++++.++..... ...|+.+.+.++.
T Consensus 221 ~~~~~va~~~~~l~~~~~~------~~~G~~i~~dgg~ 252 (255)
T PRK06841 221 AYPEEIAAAALFLASDAAA------MITGENLVIDGGY 252 (255)
T ss_pred cCHHHHHHHHHHHcCcccc------CccCCEEEECCCc
Confidence 8999999999988653222 2568888887664
|
|
| >PRK05993 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.6e-17 Score=158.48 Aligned_cols=159 Identities=18% Similarity=0.176 Sum_probs=123.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc----
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ---- 82 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~---- 82 (485)
+++++||||+|+||+++++.|.++| ++|.+++|.... + ..+...+++++.+|++|.+++.++++
T Consensus 4 ~k~vlItGasggiG~~la~~l~~~G-~~Vi~~~r~~~~----------~-~~l~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 71 (277)
T PRK05993 4 KRSILITGCSSGIGAYCARALQSDG-WRVFATCRKEED----------V-AALEAEGLEAFQLDYAEPESIAALVAQVLE 71 (277)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEECCHHH----------H-HHHHHCCceEEEccCCCHHHHHHHHHHHHH
Confidence 4789999999999999999999999 689999886431 1 11223468899999999988776654
Q ss_pred ----CCCEEEEcCCCCC-------CCCchhhhHHHHHHH----HHHHHHHHHhcCCCEEEEecCccccccCCCCcCCCCC
Q 047227 83 ----GAEVVFHMAAPNS-------SINNHKLHHSVNVEG----TKNVIDACAELKVKRLIYTSSPSVVFDGVHGIINGNE 147 (485)
Q Consensus 83 ----~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~----t~~ll~a~~~~~v~r~V~~SS~~vy~~~~~~~~~~~e 147 (485)
+.|+|||+|+... ..++.+..+++|+.| +.++++.+++.+.+++|++||...+.
T Consensus 72 ~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~l~~~~~~~~g~iv~isS~~~~~----------- 140 (277)
T PRK05993 72 LSGGRLDALFNNGAYGQPGAVEDLPTEALRAQFEANFFGWHDLTRRVIPVMRKQGQGRIVQCSSILGLV----------- 140 (277)
T ss_pred HcCCCccEEEECCCcCCCCCcccCCHHHHHHHHhHHhHHHHHHHHHHHHHHhhcCCCEEEEECChhhcC-----------
Confidence 3799999998321 122345688999999 66778888888888999999965431
Q ss_pred CCCCCCCCCchHHHHHHHHHHHHHHHh---CCCCceEEEEecCCcccC
Q 047227 148 ALPYPPKHNDFYSATKAEGEALVIKAN---GTNGLLTCCIRPSSIFGP 192 (485)
Q Consensus 148 ~~~~~~~~~~~Y~~sK~~~E~~~~~~~---~~~g~~~~ilRp~~v~Gp 192 (485)
+..+...|+.+|+..|.+.+.++ ..+|+++++++||.+-.+
T Consensus 141 ----~~~~~~~Y~asK~a~~~~~~~l~~el~~~gi~v~~v~Pg~v~T~ 184 (277)
T PRK05993 141 ----PMKYRGAYNASKFAIEGLSLTLRMELQGSGIHVSLIEPGPIETR 184 (277)
T ss_pred ----CCCccchHHHHHHHHHHHHHHHHHHhhhhCCEEEEEecCCccCc
Confidence 22355789999999999988765 346899999999988655
|
|
| >TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.7e-17 Score=154.50 Aligned_cols=214 Identities=19% Similarity=0.128 Sum_probs=149.4
Q ss_pred EEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhc--CCCeEEEEecCCCHHHHHHHhc-----
Q 047227 10 CVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALR--SGRAHYVSFDLRHKAQVLQALQ----- 82 (485)
Q Consensus 10 iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~Dl~d~~~l~~~~~----- 82 (485)
+||||++|+||+++++.|+++| ++|++++|...... .. ...... ..++.++.+|++|.+++.++++
T Consensus 1 vlItG~~g~iG~~la~~l~~~G-~~v~~~~r~~~~~~---~~---~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 73 (239)
T TIGR01830 1 ALVTGASRGIGRAIALKLAKEG-AKVIITYRSSEEGA---EE---VVEELKAYGVKALGVVCDVSDREDVKAVVEEIEEE 73 (239)
T ss_pred CEEECCCcHHHHHHHHHHHHCC-CEEEEEeCCchhHH---HH---HHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHH
Confidence 5899999999999999999999 58988887642110 00 111111 2357899999999998887764
Q ss_pred --CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHHHh----cCCCEEEEecCccccccCCCCcCCCCCCC
Q 047227 83 --GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDACAE----LKVKRLIYTSSPSVVFDGVHGIINGNEAL 149 (485)
Q Consensus 83 --~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~~~----~~v~r~V~~SS~~vy~~~~~~~~~~~e~~ 149 (485)
++|+|||+++... ...+++..+++|+.++.++++++.. .+.++++++||...++.
T Consensus 74 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~~~~~g------------ 141 (239)
T TIGR01830 74 LGPIDILVNNAGITRDNLLMRMKEEDWDAVIDTNLTGVFNLTQAVLRIMIKQRSGRIINISSVVGLMG------------ 141 (239)
T ss_pred hCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEECCccccCC------------
Confidence 3699999999422 2235677889999999999999875 34679999999654421
Q ss_pred CCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCceeecccH
Q 047227 150 PYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFTYV 226 (485)
Q Consensus 150 ~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v 226 (485)
..+...|+.+|...+.+++.++++ .|++++++||+.+.++......+..........+ ...+.++
T Consensus 142 ---~~~~~~y~~~k~a~~~~~~~l~~~~~~~g~~~~~i~pg~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~ 209 (239)
T TIGR01830 142 ---NAGQANYAASKAGVIGFTKSLAKELASRNITVNAVAPGFIDTDMTDKLSEKVKKKILSQIP---------LGRFGTP 209 (239)
T ss_pred ---CCCCchhHHHHHHHHHHHHHHHHHHhhcCeEEEEEEECCCCChhhhhcChHHHHHHHhcCC---------cCCCcCH
Confidence 123467999999999888776543 5899999999998765433222222222222211 1236679
Q ss_pred HHHHHHHHHHHHHhccccchhhccCCcEEEeeCC
Q 047227 227 ANVAHAHICAERALASEVTVAEKAAGQAYFVTNM 260 (485)
Q Consensus 227 ~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~ 260 (485)
+|+|++++.++... .....|+.||+.++
T Consensus 210 ~~~a~~~~~~~~~~------~~~~~g~~~~~~~g 237 (239)
T TIGR01830 210 EEVANAVAFLASDE------ASYITGQVIHVDGG 237 (239)
T ss_pred HHHHHHHHHHhCcc------cCCcCCCEEEeCCC
Confidence 99999998776421 11256889998654
|
This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis. |
| >PRK08264 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.75 E-value=7.6e-17 Score=152.51 Aligned_cols=160 Identities=18% Similarity=0.128 Sum_probs=126.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc---
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ--- 82 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 82 (485)
.+++++||||+|++|+++++.|+++|+.+|++++|...... . ...++.++.+|+.|.+++.++++
T Consensus 5 ~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~~~~~~----------~--~~~~~~~~~~D~~~~~~~~~~~~~~~ 72 (238)
T PRK08264 5 KGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDPESVT----------D--LGPRVVPLQLDVTDPASVAAAAEAAS 72 (238)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCcccEEEEecChhhhh----------h--cCCceEEEEecCCCHHHHHHHHHhcC
Confidence 45799999999999999999999999438988888654211 0 23578899999999999888876
Q ss_pred CCCEEEEcCCC-CC-------CCCchhhhHHHHHHHHHHHHHHHH----hcCCCEEEEecCccccccCCCCcCCCCCCCC
Q 047227 83 GAEVVFHMAAP-NS-------SINNHKLHHSVNVEGTKNVIDACA----ELKVKRLIYTSSPSVVFDGVHGIINGNEALP 150 (485)
Q Consensus 83 ~~d~Vih~aa~-~~-------~~~~~~~~~~~nv~~t~~ll~a~~----~~~v~r~V~~SS~~vy~~~~~~~~~~~e~~~ 150 (485)
..|+|||+++. .. ..+++...+++|+.++.++++++. +.+.+++|++||...+.
T Consensus 73 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~~~~~-------------- 138 (238)
T PRK08264 73 DVTILVNNAGIFRTGSLLLEGDEDALRAEMETNYFGPLAMARAFAPVLAANGGGAIVNVLSVLSWV-------------- 138 (238)
T ss_pred CCCEEEECCCcCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcChhhcc--------------
Confidence 38999999995 21 223556778999999999999865 34567899999976653
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccC
Q 047227 151 YPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGP 192 (485)
Q Consensus 151 ~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp 192 (485)
+..+...|+.+|..+|.+.+.++.+ .+++++++||+.+.++
T Consensus 139 -~~~~~~~y~~sK~a~~~~~~~l~~~~~~~~i~~~~v~pg~v~t~ 182 (238)
T PRK08264 139 -NFPNLGTYSASKAAAWSLTQALRAELAPQGTRVLGVHPGPIDTD 182 (238)
T ss_pred -CCCCchHhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeCCccccc
Confidence 1245578999999999998877643 4899999999998765
|
|
| >PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.5e-17 Score=155.36 Aligned_cols=217 Identities=17% Similarity=0.108 Sum_probs=153.3
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhh-cCCCeEEEEecCCCHHHHHHHhc-
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEAL-RSGRAHYVSFDLRHKAQVLQALQ- 82 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~- 82 (485)
.+++++|||||+|+||.++++.|.++| +.|.+++|....... ...... ...++.++.+|++|.+++.++++
T Consensus 3 ~~~~~~lItG~~g~iG~~~a~~l~~~G-~~vi~~~r~~~~~~~------~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 75 (253)
T PRK08217 3 LKDKVIVITGGAQGLGRAMAEYLAQKG-AKLALIDLNQEKLEE------AVAECGALGTEVRGYAANVTDEEDVEATFAQ 75 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEeCCHHHHHH------HHHHHHhcCCceEEEEcCCCCHHHHHHHHHH
Confidence 356899999999999999999999999 588888876431110 011111 13467889999999888776654
Q ss_pred ------CCCEEEEcCCCCC----------------CCCchhhhHHHHHHHHHHHHHHHHh----c-CCCEEEEecCcccc
Q 047227 83 ------GAEVVFHMAAPNS----------------SINNHKLHHSVNVEGTKNVIDACAE----L-KVKRLIYTSSPSVV 135 (485)
Q Consensus 83 ------~~d~Vih~aa~~~----------------~~~~~~~~~~~nv~~t~~ll~a~~~----~-~v~r~V~~SS~~vy 135 (485)
++|+|||+++... +.+++...+++|+.++.++..++.. . .-.++|++||...|
T Consensus 76 ~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~~~~iv~~ss~~~~ 155 (253)
T PRK08217 76 IAEDFGQLNGLINNAGILRDGLLVKAKDGKVTSKMSLEQFQSVIDVNLTGVFLCGREAAAKMIESGSKGVIINISSIARA 155 (253)
T ss_pred HHHHcCCCCEEEECCCccCcCcccccccccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCeEEEEEcccccc
Confidence 3799999998321 1123455778999999877655442 2 23479999997665
Q ss_pred ccCCCCcCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeE
Q 047227 136 FDGVHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKF 212 (485)
Q Consensus 136 ~~~~~~~~~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~ 212 (485)
+ ..+...|+.+|...|.+++.++.+ .+++++.++|+.+.++......+........+.+
T Consensus 156 ~----------------~~~~~~Y~~sK~a~~~l~~~la~~~~~~~i~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~-- 217 (253)
T PRK08217 156 G----------------NMGQTNYSASKAGVAAMTVTWAKELARYGIRVAAIAPGVIETEMTAAMKPEALERLEKMIP-- 217 (253)
T ss_pred C----------------CCCCchhHHHHHHHHHHHHHHHHHHHHcCcEEEEEeeCCCcCccccccCHHHHHHHHhcCC--
Confidence 3 124567999999999998887643 6899999999999887654444444444333322
Q ss_pred EecCCCceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCC
Q 047227 213 IIGDGNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNME 261 (485)
Q Consensus 213 ~~g~g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~ 261 (485)
...+.+++|+|+++..++. .....|+.|+++++.
T Consensus 218 -------~~~~~~~~~~a~~~~~l~~--------~~~~~g~~~~~~gg~ 251 (253)
T PRK08217 218 -------VGRLGEPEEIAHTVRFIIE--------NDYVTGRVLEIDGGL 251 (253)
T ss_pred -------cCCCcCHHHHHHHHHHHHc--------CCCcCCcEEEeCCCc
Confidence 2346689999999998875 223578899998763
|
|
| >PRK07985 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.3e-16 Score=155.83 Aligned_cols=221 Identities=17% Similarity=0.087 Sum_probs=152.5
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhh--cCCCeEEEEecCCCHHHHHHHhc
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEAL--RSGRAHYVSFDLRHKAQVLQALQ 82 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~Dl~d~~~l~~~~~ 82 (485)
.+++++|||||+|+||+++++.|+++| ++|.+.++..... ..++ +.... ...++.++.+|++|.+++.++++
T Consensus 47 ~~~k~vlITGas~gIG~aia~~L~~~G-~~Vi~~~~~~~~~--~~~~---~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 120 (294)
T PRK07985 47 LKDRKALVTGGDSGIGRAAAIAYAREG-ADVAISYLPVEEE--DAQD---VKKIIEECGRKAVLLPGDLSDEKFARSLVH 120 (294)
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHCC-CEEEEecCCcchh--hHHH---HHHHHHHcCCeEEEEEccCCCHHHHHHHHH
Confidence 345799999999999999999999999 6888876543210 0011 11111 13457789999999988776654
Q ss_pred -------CCCEEEEcCCCCC--------CCCchhhhHHHHHHHHHHHHHHHHhc--CCCEEEEecCccccccCCCCcCCC
Q 047227 83 -------GAEVVFHMAAPNS--------SINNHKLHHSVNVEGTKNVIDACAEL--KVKRLIYTSSPSVVFDGVHGIING 145 (485)
Q Consensus 83 -------~~d~Vih~aa~~~--------~~~~~~~~~~~nv~~t~~ll~a~~~~--~v~r~V~~SS~~vy~~~~~~~~~~ 145 (485)
++|++||+|+... +.+++...+++|+.++.++++++... .-.++|++||...+..
T Consensus 121 ~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~iSS~~~~~~-------- 192 (294)
T PRK07985 121 EAHKALGGLDIMALVAGKQVAIPDIADLTSEQFQKTFAINVFALFWLTQEAIPLLPKGASIITTSSIQAYQP-------- 192 (294)
T ss_pred HHHHHhCCCCEEEECCCCCcCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhcCCEEEEECCchhccC--------
Confidence 4799999998321 23456778999999999999998753 1258999999877631
Q ss_pred CCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCC--CChHHHHHHHHcCCCeEEecCCCce
Q 047227 146 NEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDR--LLVPSLVAAARAGKSKFIIGDGNNV 220 (485)
Q Consensus 146 ~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~--~~~~~~~~~~~~g~~~~~~g~g~~~ 220 (485)
......|+.+|...+.+.+.++.+ +|+++.+++|+.+.++... ..-........... ..
T Consensus 193 -------~~~~~~Y~asKaal~~l~~~la~el~~~gIrvn~i~PG~v~t~~~~~~~~~~~~~~~~~~~~---------~~ 256 (294)
T PRK07985 193 -------SPHLLDYAATKAAILNYSRGLAKQVAEKGIRVNIVAPGPIWTALQISGGQTQDKIPQFGQQT---------PM 256 (294)
T ss_pred -------CCCcchhHHHHHHHHHHHHHHHHHHhHhCcEEEEEECCcCccccccccCCCHHHHHHHhccC---------CC
Confidence 123457999999999998887754 5899999999999988421 11111221221111 11
Q ss_pred eecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCC
Q 047227 221 YDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNME 261 (485)
Q Consensus 221 ~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~ 261 (485)
..+...+|+|.++..++..... -..|+.+.+.++.
T Consensus 257 ~r~~~pedva~~~~fL~s~~~~------~itG~~i~vdgG~ 291 (294)
T PRK07985 257 KRAGQPAELAPVYVYLASQESS------YVTAEVHGVCGGE 291 (294)
T ss_pred CCCCCHHHHHHHHHhhhChhcC------CccccEEeeCCCe
Confidence 2356789999999988653211 2567888877653
|
|
| >PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed | Back alignment and domain information |
|---|
Probab=99.75 E-value=7.8e-17 Score=152.95 Aligned_cols=221 Identities=19% Similarity=0.123 Sum_probs=149.3
Q ss_pred CCCCCCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHH
Q 047227 1 MSGEENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQA 80 (485)
Q Consensus 1 M~~~~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~ 80 (485)
|. ..+++++|||||+|+||+++++.|+++| +.|.+.++...... . +.... ..+++++.+|++|.+++.++
T Consensus 1 ~~-~~~~~~vlItGa~g~iG~~la~~l~~~g-~~v~~~~~~~~~~~----~---~~~~~-~~~~~~~~~D~~~~~~~~~~ 70 (245)
T PRK12936 1 MF-DLSGRKALVTGASGGIGEEIARLLHAQG-AIVGLHGTRVEKLE----A---LAAEL-GERVKIFPANLSDRDEVKAL 70 (245)
T ss_pred Cc-CCCCCEEEEECCCChHHHHHHHHHHHCC-CEEEEEcCCHHHHH----H---HHHHh-CCceEEEEccCCCHHHHHHH
Confidence 55 3456899999999999999999999999 57877766532110 0 11111 24688899999999988776
Q ss_pred hc-------CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHHHh----cCCCEEEEecCccccccCCCCc
Q 047227 81 LQ-------GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDACAE----LKVKRLIYTSSPSVVFDGVHGI 142 (485)
Q Consensus 81 ~~-------~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~~~----~~v~r~V~~SS~~vy~~~~~~~ 142 (485)
++ ++|+|||+|+... ...+++..+++|+.++.++++++.+ .+.+++|++||...+.+
T Consensus 71 ~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~----- 145 (245)
T PRK12936 71 GQKAEADLEGVDILVNNAGITKDGLFVRMSDEDWDSVLEVNLTATFRLTRELTHPMMRRRYGRIINITSVVGVTG----- 145 (245)
T ss_pred HHHHHHHcCCCCEEEECCCCCCCCccccCCHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCEEEEECCHHhCcC-----
Confidence 53 4899999999321 2235677889999999998887653 35679999999655421
Q ss_pred CCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCc
Q 047227 143 INGNEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNN 219 (485)
Q Consensus 143 ~~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~ 219 (485)
......|+.+|...+.+.+.++.+ .++++++++|+.+..+......+......... ..
T Consensus 146 ----------~~~~~~Y~~sk~a~~~~~~~la~~~~~~~i~v~~i~pg~~~t~~~~~~~~~~~~~~~~~---------~~ 206 (245)
T PRK12936 146 ----------NPGQANYCASKAGMIGFSKSLAQEIATRNVTVNCVAPGFIESAMTGKLNDKQKEAIMGA---------IP 206 (245)
T ss_pred ----------CCCCcchHHHHHHHHHHHHHHHHHhhHhCeEEEEEEECcCcCchhcccChHHHHHHhcC---------CC
Confidence 123357999999888887766543 57999999999876553222111111111111 11
Q ss_pred eeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCC
Q 047227 220 VYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNME 261 (485)
Q Consensus 220 ~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~ 261 (485)
...+..++|+++++..++... .....|+.+++.++.
T Consensus 207 ~~~~~~~~~ia~~~~~l~~~~------~~~~~G~~~~~~~g~ 242 (245)
T PRK12936 207 MKRMGTGAEVASAVAYLASSE------AAYVTGQTIHVNGGM 242 (245)
T ss_pred CCCCcCHHHHHHHHHHHcCcc------ccCcCCCEEEECCCc
Confidence 233667999999998775421 112568899988763
|
|
| >PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.4e-16 Score=150.82 Aligned_cols=221 Identities=15% Similarity=0.098 Sum_probs=150.3
Q ss_pred CCCCCCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHH
Q 047227 1 MSGEENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQA 80 (485)
Q Consensus 1 M~~~~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~ 80 (485)
|.-..++|+++||||+|.||+++++.|.++| ++|.+..+.... ....+...++.++.+|+.|++++.++
T Consensus 1 m~~~l~~k~~lItGas~gIG~~~a~~l~~~G-~~v~~~~~~~~~----------~~~~l~~~~~~~~~~Dl~~~~~~~~~ 69 (255)
T PRK06463 1 YSMRFKGKVALITGGTRGIGRAIAEAFLREG-AKVAVLYNSAEN----------EAKELREKGVFTIKCDVGNRDQVKKS 69 (255)
T ss_pred CCCCcCCCEEEEeCCCChHHHHHHHHHHHCC-CEEEEEeCCcHH----------HHHHHHhCCCeEEEecCCCHHHHHHH
Confidence 5545567899999999999999999999999 588776554321 11112223578899999999988877
Q ss_pred hc-------CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHH----HHHHHhcCCCEEEEecCccccccCCCCc
Q 047227 81 LQ-------GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNV----IDACAELKVKRLIYTSSPSVVFDGVHGI 142 (485)
Q Consensus 81 ~~-------~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~l----l~a~~~~~v~r~V~~SS~~vy~~~~~~~ 142 (485)
++ +.|+|||+|+... +.++++..+++|+.++..+ +..+++.+.+++|++||...++.
T Consensus 70 ~~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~g~iv~isS~~~~~~----- 144 (255)
T PRK06463 70 KEVVEKEFGRVDVLVNNAGIMYLMPFEEFDEEKYNKMIKINLNGAIYTTYEFLPLLKLSKNGAIVNIASNAGIGT----- 144 (255)
T ss_pred HHHHHHHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCcEEEEEcCHHhCCC-----
Confidence 64 4899999998321 2234567889999996554 55555555679999999766531
Q ss_pred CCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCC-----CChHHHHHHHHcCCCeEEe
Q 047227 143 INGNEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDR-----LLVPSLVAAARAGKSKFII 214 (485)
Q Consensus 143 ~~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~-----~~~~~~~~~~~~g~~~~~~ 214 (485)
+......|+.+|+..+.+.+.++.+ .++++.+++|+.+-.+-.. .....+........
T Consensus 145 ---------~~~~~~~Y~asKaa~~~~~~~la~e~~~~~i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~----- 210 (255)
T PRK06463 145 ---------AAEGTTFYAITKAGIIILTRRLAFELGKYGIRVNAVAPGWVETDMTLSGKSQEEAEKLRELFRNKT----- 210 (255)
T ss_pred ---------CCCCccHhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCCCCCchhhcccCccchHHHHHHHHhCC-----
Confidence 1123467999999999999888743 5899999999988544211 00111111112111
Q ss_pred cCCCceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCC
Q 047227 215 GDGNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNME 261 (485)
Q Consensus 215 g~g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~ 261 (485)
....+..++|+|++++.++.... ....|+.+.+.++.
T Consensus 211 ----~~~~~~~~~~va~~~~~l~s~~~------~~~~G~~~~~dgg~ 247 (255)
T PRK06463 211 ----VLKTTGKPEDIANIVLFLASDDA------RYITGQVIVADGGR 247 (255)
T ss_pred ----CcCCCcCHHHHHHHHHHHcChhh------cCCCCCEEEECCCe
Confidence 12345679999999998865221 12568888887654
|
|
| >PRK06398 aldose dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.1e-16 Score=151.44 Aligned_cols=214 Identities=17% Similarity=0.147 Sum_probs=149.3
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc-
Q 047227 4 EENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ- 82 (485)
Q Consensus 4 ~~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~- 82 (485)
..++|++|||||+|.||+++++.|.++| ++|.+++|.... ..++.++.+|++|++++.++++
T Consensus 3 ~l~gk~vlItGas~gIG~~ia~~l~~~G-~~Vi~~~r~~~~----------------~~~~~~~~~D~~~~~~i~~~~~~ 65 (258)
T PRK06398 3 GLKDKVAIVTGGSQGIGKAVVNRLKEEG-SNVINFDIKEPS----------------YNDVDYFKVDVSNKEQVIKGIDY 65 (258)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCC-CeEEEEeCCccc----------------cCceEEEEccCCCHHHHHHHHHH
Confidence 3456899999999999999999999999 589888876431 1257889999999998877764
Q ss_pred ------CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHHHh----cCCCEEEEecCccccccCCCCcCCC
Q 047227 83 ------GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDACAE----LKVKRLIYTSSPSVVFDGVHGIING 145 (485)
Q Consensus 83 ------~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~~~----~~v~r~V~~SS~~vy~~~~~~~~~~ 145 (485)
+.|+|||+||... ..++++..+++|+.++.++.+++.. .+..++|++||...+.
T Consensus 66 ~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~--------- 136 (258)
T PRK06398 66 VISKYGRIDILVNNAGIESYGAIHAVEEDEWDRIINVNVNGIFLMSKYTIPYMLKQDKGVIINIASVQSFA--------- 136 (258)
T ss_pred HHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEeCcchhcc---------
Confidence 4899999999321 2234566789999999999887754 3567999999976652
Q ss_pred CCCCCCCCCCCchHHHHHHHHHHHHHHHhCCC--CceEEEEecCCcccCCCCCCh-------HH-HHHHHHcCCCeEEec
Q 047227 146 NEALPYPPKHNDFYSATKAEGEALVIKANGTN--GLLTCCIRPSSIFGPGDRLLV-------PS-LVAAARAGKSKFIIG 215 (485)
Q Consensus 146 ~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~--g~~~~ilRp~~v~Gp~~~~~~-------~~-~~~~~~~g~~~~~~g 215 (485)
+..+...|+.+|+..+.+.+.++.+. ++++.+++||.+-.+-..... +. ....... ++
T Consensus 137 ------~~~~~~~Y~~sKaal~~~~~~la~e~~~~i~vn~i~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~------~~ 204 (258)
T PRK06398 137 ------VTRNAAAYVTSKHAVLGLTRSIAVDYAPTIRCVAVCPGSIRTPLLEWAAELEVGKDPEHVERKIRE------WG 204 (258)
T ss_pred ------CCCCCchhhhhHHHHHHHHHHHHHHhCCCCEEEEEecCCccchHHhhhhhccccCChhhhHHHHHh------hh
Confidence 12356789999999999998876543 389999999988655211000 00 0000000 01
Q ss_pred CCCceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCC
Q 047227 216 DGNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNME 261 (485)
Q Consensus 216 ~g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~ 261 (485)
.......+..++|+|++++.++.... ....|+.+.+.++.
T Consensus 205 ~~~~~~~~~~p~eva~~~~~l~s~~~------~~~~G~~i~~dgg~ 244 (258)
T PRK06398 205 EMHPMKRVGKPEEVAYVVAFLASDLA------SFITGECVTVDGGL 244 (258)
T ss_pred hcCCcCCCcCHHHHHHHHHHHcCccc------CCCCCcEEEECCcc
Confidence 11122346779999999988764211 22567777776653
|
|
| >PRK08219 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.3e-17 Score=152.91 Aligned_cols=192 Identities=18% Similarity=0.148 Sum_probs=134.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc---C
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ---G 83 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~---~ 83 (485)
+|++|||||+|++|+++++.|+++ + +|++++|...... . +.+ ..++++++.+|+.|.+++.++++ +
T Consensus 3 ~~~vlVtG~~g~iG~~l~~~l~~~-~-~V~~~~r~~~~~~----~---~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~~ 71 (227)
T PRK08219 3 RPTALITGASRGIGAAIARELAPT-H-TLLLGGRPAERLD----E---LAA--ELPGATPFPVDLTDPEAIAAAVEQLGR 71 (227)
T ss_pred CCEEEEecCCcHHHHHHHHHHHhh-C-CEEEEeCCHHHHH----H---HHH--HhccceEEecCCCCHHHHHHHHHhcCC
Confidence 579999999999999999999998 4 7999988643110 0 111 12368899999999999998886 5
Q ss_pred CCEEEEcCCCCCC-------CCchhhhHHHHHHH----HHHHHHHHHhcCCCEEEEecCccccccCCCCcCCCCCCCCCC
Q 047227 84 AEVVFHMAAPNSS-------INNHKLHHSVNVEG----TKNVIDACAELKVKRLIYTSSPSVVFDGVHGIINGNEALPYP 152 (485)
Q Consensus 84 ~d~Vih~aa~~~~-------~~~~~~~~~~nv~~----t~~ll~a~~~~~v~r~V~~SS~~vy~~~~~~~~~~~e~~~~~ 152 (485)
.|+|||+++.... ..+....+++|+.+ +.++++++++.+ +++|++||...++.
T Consensus 72 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~~~v~~ss~~~~~~--------------- 135 (227)
T PRK08219 72 LDVLVHNAGVADLGPVAESTVDEWRATLEVNVVAPAELTRLLLPALRAAH-GHVVFINSGAGLRA--------------- 135 (227)
T ss_pred CCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCC-CeEEEEcchHhcCc---------------
Confidence 8999999994321 12344567888888 455555555553 68999999776531
Q ss_pred CCCCchHHHHHHHHHHHHHHHhCC-CC-ceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCceeecccHHHHH
Q 047227 153 PKHNDFYSATKAEGEALVIKANGT-NG-LLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVA 230 (485)
Q Consensus 153 ~~~~~~Y~~sK~~~E~~~~~~~~~-~g-~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~D~a 230 (485)
..+...|+.+|...|.+++.++.. .+ +++..++|+.+.++... .+.. ..+. ......+++++|+|
T Consensus 136 ~~~~~~y~~~K~a~~~~~~~~~~~~~~~i~~~~i~pg~~~~~~~~----~~~~--~~~~-------~~~~~~~~~~~dva 202 (227)
T PRK08219 136 NPGWGSYAASKFALRALADALREEEPGNVRVTSVHPGRTDTDMQR----GLVA--QEGG-------EYDPERYLRPETVA 202 (227)
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHhcCCceEEEEecCCccchHhh----hhhh--hhcc-------ccCCCCCCCHHHHH
Confidence 234568999999999988876543 23 89999999887655321 1111 0111 11224689999999
Q ss_pred HHHHHHHH
Q 047227 231 HAHICAER 238 (485)
Q Consensus 231 ~a~~~~~~ 238 (485)
++++.+++
T Consensus 203 ~~~~~~l~ 210 (227)
T PRK08219 203 KAVRFAVD 210 (227)
T ss_pred HHHHHHHc
Confidence 99999876
|
|
| >PRK07453 protochlorophyllide oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.1e-17 Score=161.60 Aligned_cols=181 Identities=15% Similarity=0.081 Sum_probs=127.9
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhh-hcCCCeEEEEecCCCHHHHHHHhc-
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEA-LRSGRAHYVSFDLRHKAQVLQALQ- 82 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~l~~~~~- 82 (485)
.++++++||||+|+||.++++.|+++| ++|++++|....... ..... ....++.++.+|++|.+++.++++
T Consensus 4 ~~~k~vlVTGas~gIG~~~a~~L~~~G-~~V~~~~r~~~~~~~------~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~ 76 (322)
T PRK07453 4 DAKGTVIITGASSGVGLYAAKALAKRG-WHVIMACRNLKKAEA------AAQELGIPPDSYTIIHIDLGDLDSVRRFVDD 76 (322)
T ss_pred CCCCEEEEEcCCChHHHHHHHHHHHCC-CEEEEEECCHHHHHH------HHHHhhccCCceEEEEecCCCHHHHHHHHHH
Confidence 356899999999999999999999999 689998876432111 01111 113468899999999998887764
Q ss_pred ------CCCEEEEcCCCCC--------CCCchhhhHHHHHHHHHHHHHHHHh----cC--CCEEEEecCccccccCCCCc
Q 047227 83 ------GAEVVFHMAAPNS--------SINNHKLHHSVNVEGTKNVIDACAE----LK--VKRLIYTSSPSVVFDGVHGI 142 (485)
Q Consensus 83 ------~~d~Vih~aa~~~--------~~~~~~~~~~~nv~~t~~ll~a~~~----~~--v~r~V~~SS~~vy~~~~~~~ 142 (485)
++|+|||+||... +.++++.++++|+.|+.++.+++.. .+ ..|+|++||...++......
T Consensus 77 ~~~~~~~iD~li~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~riV~vsS~~~~~~~~~~~ 156 (322)
T PRK07453 77 FRALGKPLDALVCNAAVYMPLLKEPLRSPQGYELSMATNHLGHFLLCNLLLEDLKKSPAPDPRLVILGTVTANPKELGGK 156 (322)
T ss_pred HHHhCCCccEEEECCcccCCCCCCCCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCCCCceEEEEcccccCccccCCc
Confidence 3899999999321 2235677899999999999887764 22 35999999987654211100
Q ss_pred C--C--CCC----------------CCCCCCCCCchHHHHHHHHHHHHHHHhCC----CCceEEEEecCCcccC
Q 047227 143 I--N--GNE----------------ALPYPPKHNDFYSATKAEGEALVIKANGT----NGLLTCCIRPSSIFGP 192 (485)
Q Consensus 143 ~--~--~~e----------------~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~----~g~~~~ilRp~~v~Gp 192 (485)
. + .+. ....+..|.+.|+.||...+.+.+.++++ .|++++++|||+|++.
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~SK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~~t 230 (322)
T PRK07453 157 IPIPAPADLGDLSGFEAGFKAPISMADGKKFKPGKAYKDSKLCNMLTMRELHRRYHESTGITFSSLYPGCVADT 230 (322)
T ss_pred cCCCCccchhhhhcchhcccccccccCccCCCccchhhHhHHHHHHHHHHHHHhhcccCCeEEEEecCCcccCC
Confidence 0 0 000 00112456788999999988877776654 4799999999999864
|
|
| >PRK07063 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=6.8e-17 Score=155.00 Aligned_cols=227 Identities=15% Similarity=0.070 Sum_probs=153.2
Q ss_pred CCCCCCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHH
Q 047227 1 MSGEENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQA 80 (485)
Q Consensus 1 M~~~~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~ 80 (485)
|+...++|++|||||+|.||.++++.|.++| ++|.+++|..........+ +.......++.++.+|++|++++.++
T Consensus 1 ~~~~l~~k~vlVtGas~gIG~~~a~~l~~~G-~~vv~~~r~~~~~~~~~~~---~~~~~~~~~~~~~~~Dl~~~~~~~~~ 76 (260)
T PRK07063 1 MMNRLAGKVALVTGAAQGIGAAIARAFAREG-AAVALADLDAALAERAAAA---IARDVAGARVLAVPADVTDAASVAAA 76 (260)
T ss_pred CCcccCCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHH---HHhccCCceEEEEEccCCCHHHHHHH
Confidence 5666678999999999999999999999999 6899988864321110000 11000134678899999999888877
Q ss_pred hc-------CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHHHh----cCCCEEEEecCccccccCCCCc
Q 047227 81 LQ-------GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDACAE----LKVKRLIYTSSPSVVFDGVHGI 142 (485)
Q Consensus 81 ~~-------~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~~~----~~v~r~V~~SS~~vy~~~~~~~ 142 (485)
++ ++|++||+|+... ..++++..+++|+.++.++.+++.. .+..++|++||...+.
T Consensus 77 ~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~------ 150 (260)
T PRK07063 77 VAAAEEAFGPLDVLVNNAGINVFADPLAMTDEDWRRCFAVDLDGAWNGCRAVLPGMVERGRGSIVNIASTHAFK------ 150 (260)
T ss_pred HHHHHHHhCCCcEEEECCCcCCCCChhhCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhhCCeEEEEECChhhcc------
Confidence 65 4899999999321 2335667889999999888888653 4456899999975542
Q ss_pred CCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCChH-----H-HHHHHHcCCCeEE
Q 047227 143 INGNEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLLVP-----S-LVAAARAGKSKFI 213 (485)
Q Consensus 143 ~~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~~~-----~-~~~~~~~g~~~~~ 213 (485)
+..+...|+.+|...+.+.+.++.+ .|+++.+++||.+-.+....... . .........
T Consensus 151 ---------~~~~~~~Y~~sKaa~~~~~~~la~el~~~gIrvn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~---- 217 (260)
T PRK07063 151 ---------IIPGCFPYPVAKHGLLGLTRALGIEYAARNVRVNAIAPGYIETQLTEDWWNAQPDPAAARAETLALQ---- 217 (260)
T ss_pred ---------CCCCchHHHHHHHHHHHHHHHHHHHhCccCeEEEEEeeCCccChhhhhhhhccCChHHHHHHHHhcC----
Confidence 1234457999999999999887643 57999999999986553211100 0 111111111
Q ss_pred ecCCCceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCC
Q 047227 214 IGDGNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNME 261 (485)
Q Consensus 214 ~g~g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~ 261 (485)
....+..++|+|.+++.++.... .-..|+...+.++.
T Consensus 218 -----~~~r~~~~~~va~~~~fl~s~~~------~~itG~~i~vdgg~ 254 (260)
T PRK07063 218 -----PMKRIGRPEEVAMTAVFLASDEA------PFINATCITIDGGR 254 (260)
T ss_pred -----CCCCCCCHHHHHHHHHHHcCccc------cccCCcEEEECCCe
Confidence 11225568999999998754211 22567777776653
|
|
| >PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=6.6e-17 Score=153.59 Aligned_cols=217 Identities=19% Similarity=0.156 Sum_probs=151.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEe-ecCCccccCCccchhhhhhhh--cCCCeEEEEecCCCHHHHHHHhc
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIA-DLSDSIALEPHEEQGILGEAL--RSGRAHYVSFDLRHKAQVLQALQ 82 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~-~r~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~Dl~d~~~l~~~~~ 82 (485)
+++++|||||+|+||.++++.|+++| ++|.++ +|....... ....+ ...++.++.+|++|++++.++++
T Consensus 4 ~~~~ilI~Gasg~iG~~la~~l~~~g-~~v~~~~~r~~~~~~~-------~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 75 (247)
T PRK05565 4 MGKVAIVTGASGGIGRAIAELLAKEG-AKVVIAYDINEEAAQE-------LLEEIKEEGGDAIAVKADVSSEEDVENLVE 75 (247)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEcCCCHHHHHH-------HHHHHHhcCCeEEEEECCCCCHHHHHHHHH
Confidence 45799999999999999999999999 578777 765431100 11111 13468899999999998877765
Q ss_pred -------CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHHHh----cCCCEEEEecCccccccCCCCcCC
Q 047227 83 -------GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDACAE----LKVKRLIYTSSPSVVFDGVHGIIN 144 (485)
Q Consensus 83 -------~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~~~----~~v~r~V~~SS~~vy~~~~~~~~~ 144 (485)
++|+|||+++... ..++.+..+++|+.++.++++++.. .+.+++|++||...+..
T Consensus 76 ~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~~~~~~------- 148 (247)
T PRK05565 76 QIVEKFGKIDILVNNAGISNFGLVTDMTDEEWDRVIDVNLTGVMLLTRYALPYMIKRKSGVIVNISSIWGLIG------- 148 (247)
T ss_pred HHHHHhCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECCHhhccC-------
Confidence 6899999999431 2234567889999998888877764 44678999999766531
Q ss_pred CCCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCcee
Q 047227 145 GNEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVY 221 (485)
Q Consensus 145 ~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~~ 221 (485)
......|+.+|...+.+++.++.. .|++++++||+.+..+..+...+......... ....
T Consensus 149 --------~~~~~~y~~sK~a~~~~~~~~~~~~~~~gi~~~~v~pg~v~t~~~~~~~~~~~~~~~~~---------~~~~ 211 (247)
T PRK05565 149 --------ASCEVLYSASKGAVNAFTKALAKELAPSGIRVNAVAPGAIDTEMWSSFSEEDKEGLAEE---------IPLG 211 (247)
T ss_pred --------CCCccHHHHHHHHHHHHHHHHHHHHHHcCeEEEEEEECCccCccccccChHHHHHHHhc---------CCCC
Confidence 123457999999888887776543 58999999999987765443322222111110 1123
Q ss_pred ecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCC
Q 047227 222 DFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNM 260 (485)
Q Consensus 222 ~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~ 260 (485)
.+..++|++++++.++..... ...|+.+++.++
T Consensus 212 ~~~~~~~va~~~~~l~~~~~~------~~~g~~~~~~~~ 244 (247)
T PRK05565 212 RLGKPEEIAKVVLFLASDDAS------YITGQIITVDGG 244 (247)
T ss_pred CCCCHHHHHHHHHHHcCCccC------CccCcEEEecCC
Confidence 467899999999888653322 267888888775
|
|
| >PRK12937 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.1e-16 Score=152.04 Aligned_cols=219 Identities=18% Similarity=0.182 Sum_probs=149.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhh-hcCCCeEEEEecCCCHHHHHHHhc--
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEA-LRSGRAHYVSFDLRHKAQVLQALQ-- 82 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~l~~~~~-- 82 (485)
+++++|||||+|+||+++++.|.++| ++|.++.+...... .. ..... ....++.++.+|++|++++.++++
T Consensus 4 ~~~~vlItG~~~~iG~~la~~l~~~g-~~v~~~~~~~~~~~---~~--~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 77 (245)
T PRK12937 4 SNKVAIVTGASRGIGAAIARRLAADG-FAVAVNYAGSAAAA---DE--LVAEIEAAGGRAIAVQADVADAAAVTRLFDAA 77 (245)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCC-CEEEEecCCCHHHH---HH--HHHHHHhcCCeEEEEECCCCCHHHHHHHHHHH
Confidence 45899999999999999999999999 57777665432110 00 01111 113468899999999998888775
Q ss_pred -----CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHHHhc--CCCEEEEecCccccccCCCCcCCCCCC
Q 047227 83 -----GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDACAEL--KVKRLIYTSSPSVVFDGVHGIINGNEA 148 (485)
Q Consensus 83 -----~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~~~~--~v~r~V~~SS~~vy~~~~~~~~~~~e~ 148 (485)
++|+|||+|+... ...+++..+++|+.++.++++++.+. ..+++|++||...+.
T Consensus 78 ~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~------------ 145 (245)
T PRK12937 78 ETAFGRIDVLVNNAGVMPLGTIADFDLEDFDRTIATNLRGAFVVLREAARHLGQGGRIINLSTSVIAL------------ 145 (245)
T ss_pred HHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHHhccCcEEEEEeeccccC------------
Confidence 5899999999322 22345667899999999999888754 235899999865432
Q ss_pred CCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCC-CCChHHHHHHHHcCCCeEEecCCCceeecc
Q 047227 149 LPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGD-RLLVPSLVAAARAGKSKFIIGDGNNVYDFT 224 (485)
Q Consensus 149 ~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~-~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i 224 (485)
+..+.+.|+.+|...|.+++.++.+ .++++++++|+.+-.+.. ....+.....+....+ ...+.
T Consensus 146 ---~~~~~~~Y~~sK~a~~~~~~~~a~~~~~~~i~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~---------~~~~~ 213 (245)
T PRK12937 146 ---PLPGYGPYAASKAAVEGLVHVLANELRGRGITVNAVAPGPVATELFFNGKSAEQIDQLAGLAP---------LERLG 213 (245)
T ss_pred ---CCCCCchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCCccCchhcccCCHHHHHHHHhcCC---------CCCCC
Confidence 1234578999999999999887643 479999999998766531 1111223333332221 12355
Q ss_pred cHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCC
Q 047227 225 YVANVAHAHICAERALASEVTVAEKAAGQAYFVTNM 260 (485)
Q Consensus 225 ~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~ 260 (485)
+++|+|+++..++....+ -..|+.+++.++
T Consensus 214 ~~~d~a~~~~~l~~~~~~------~~~g~~~~~~~g 243 (245)
T PRK12937 214 TPEEIAAAVAFLAGPDGA------WVNGQVLRVNGG 243 (245)
T ss_pred CHHHHHHHHHHHcCcccc------CccccEEEeCCC
Confidence 789999998887652211 256788888654
|
|
| >PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.2e-16 Score=152.48 Aligned_cols=216 Identities=18% Similarity=0.141 Sum_probs=149.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcC---
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQG--- 83 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~--- 83 (485)
++++|||||+|+||+++++.|+++| ++|.+..+...... +. +.... ..++.++.+|+.|++++.+++++
T Consensus 5 ~k~ilItGas~gIG~~la~~l~~~G-~~vv~~~~~~~~~~---~~---~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~ 76 (253)
T PRK08642 5 EQTVLVTGGSRGLGAAIARAFAREG-ARVVVNYHQSEDAA---EA---LADEL-GDRAIALQADVTDREQVQAMFATATE 76 (253)
T ss_pred CCEEEEeCCCCcHHHHHHHHHHHCC-CeEEEEcCCCHHHH---HH---HHHHh-CCceEEEEcCCCCHHHHHHHHHHHHH
Confidence 5799999999999999999999999 57776544322110 00 11111 24688899999999888777642
Q ss_pred -----CCEEEEcCCCCC-------------CCCchhhhHHHHHHHHHHHHHHHHh----cCCCEEEEecCccccccCCCC
Q 047227 84 -----AEVVFHMAAPNS-------------SINNHKLHHSVNVEGTKNVIDACAE----LKVKRLIYTSSPSVVFDGVHG 141 (485)
Q Consensus 84 -----~d~Vih~aa~~~-------------~~~~~~~~~~~nv~~t~~ll~a~~~----~~v~r~V~~SS~~vy~~~~~~ 141 (485)
+|+|||+|+... +.+++...+++|+.++.++++++.. .+..++|++||.....
T Consensus 77 ~~g~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~iss~~~~~----- 151 (253)
T PRK08642 77 HFGKPITTVVNNALADFSFDGDARKKADDITWEDFQQQLEGSVKGALNTIQAALPGMREQGFGRIINIGTNLFQN----- 151 (253)
T ss_pred HhCCCCeEEEECCCccccccccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHHHHhcCCeEEEEECCccccC-----
Confidence 899999997321 1123456799999999999999863 4457899999853210
Q ss_pred cCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCC-hHHHHHHHHcCCCeEEecCC
Q 047227 142 IINGNEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLL-VPSLVAAARAGKSKFIIGDG 217 (485)
Q Consensus 142 ~~~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~-~~~~~~~~~~g~~~~~~g~g 217 (485)
+..+.+.|+.+|...|.+++.++.+ .++++..++||.+-.+..... -+..........
T Consensus 152 ----------~~~~~~~Y~~sK~a~~~l~~~la~~~~~~~i~v~~i~pG~v~t~~~~~~~~~~~~~~~~~~~-------- 213 (253)
T PRK08642 152 ----------PVVPYHDYTTAKAALLGLTRNLAAELGPYGITVNMVSGGLLRTTDASAATPDEVFDLIAATT-------- 213 (253)
T ss_pred ----------CCCCccchHHHHHHHHHHHHHHHHHhCccCeEEEEEeecccCCchhhccCCHHHHHHHHhcC--------
Confidence 2345668999999999999998754 579999999998865532111 122222222211
Q ss_pred CceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCC
Q 047227 218 NNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNM 260 (485)
Q Consensus 218 ~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~ 260 (485)
....+.+++|+|+++..++..... ...|+.+.+.++
T Consensus 214 -~~~~~~~~~~va~~~~~l~~~~~~------~~~G~~~~vdgg 249 (253)
T PRK08642 214 -PLRKVTTPQEFADAVLFFASPWAR------AVTGQNLVVDGG 249 (253)
T ss_pred -CcCCCCCHHHHHHHHHHHcCchhc------CccCCEEEeCCC
Confidence 123478899999999988753222 267888887765
|
|
| >TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.4e-16 Score=151.75 Aligned_cols=216 Identities=14% Similarity=0.060 Sum_probs=150.4
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhh--cCCCeEEEEecCCCHHHHHHHhc
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEAL--RSGRAHYVSFDLRHKAQVLQALQ 82 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~Dl~d~~~l~~~~~ 82 (485)
.+++++|||||+|+||.+++++|+++| ++|.+++|.... . ..... ...++..+.+|++|.+++.++++
T Consensus 3 ~~~k~vlItGas~gIG~~ia~~l~~~G-~~vi~~~r~~~~-----~----~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 72 (248)
T TIGR01832 3 LEGKVALVTGANTGLGQGIAVGLAEAG-ADIVGAGRSEPS-----E----TQQQVEALGRRFLSLTADLSDIEAIKALVD 72 (248)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEcCchHH-----H----HHHHHHhcCCceEEEECCCCCHHHHHHHHH
Confidence 457899999999999999999999999 589888875321 0 11111 13468899999999998876654
Q ss_pred -------CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHHHh----cC-CCEEEEecCccccccCCCCcC
Q 047227 83 -------GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDACAE----LK-VKRLIYTSSPSVVFDGVHGII 143 (485)
Q Consensus 83 -------~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~~~----~~-v~r~V~~SS~~vy~~~~~~~~ 143 (485)
++|++||+|+... ...+++..+++|+.++.++++++.. .+ .+++|++||...+.+
T Consensus 73 ~~~~~~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~------ 146 (248)
T TIGR01832 73 SAVEEFGHIDILVNNAGIIRRADAEEFSEKDWDDVMNVNLKSVFFLTQAAAKHFLKQGRGGKIINIASMLSFQG------ 146 (248)
T ss_pred HHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCeEEEEEecHHhccC------
Confidence 4899999999322 1235566789999999999988764 33 468999999877632
Q ss_pred CCCCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCCh--HHHHHHHHcCCCeEEecCCC
Q 047227 144 NGNEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLLV--PSLVAAARAGKSKFIIGDGN 218 (485)
Q Consensus 144 ~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~~--~~~~~~~~~g~~~~~~g~g~ 218 (485)
......|+.+|...+.+.+.++++ +|+++++++||.+..+...... .......... .
T Consensus 147 ---------~~~~~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~---------~ 208 (248)
T TIGR01832 147 ---------GIRVPSYTASKHGVAGLTKLLANEWAAKGINVNAIAPGYMATNNTQALRADEDRNAAILER---------I 208 (248)
T ss_pred ---------CCCCchhHHHHHHHHHHHHHHHHHhCccCcEEEEEEECcCcCcchhccccChHHHHHHHhc---------C
Confidence 123357999999999999888765 4899999999999876432111 1111111111 1
Q ss_pred ceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCC
Q 047227 219 NVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNM 260 (485)
Q Consensus 219 ~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~ 260 (485)
....++.++|+|+++..++..... ...|+.+.+.++
T Consensus 209 ~~~~~~~~~dva~~~~~l~s~~~~------~~~G~~i~~dgg 244 (248)
T TIGR01832 209 PAGRWGTPDDIGGPAVFLASSASD------YVNGYTLAVDGG 244 (248)
T ss_pred CCCCCcCHHHHHHHHHHHcCcccc------CcCCcEEEeCCC
Confidence 124688899999999888652111 145666666543
|
This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation. |
| >PRK08085 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.5e-16 Score=152.10 Aligned_cols=217 Identities=18% Similarity=0.121 Sum_probs=151.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhc--CCCeEEEEecCCCHHHHHHHhc-
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALR--SGRAHYVSFDLRHKAQVLQALQ- 82 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~Dl~d~~~l~~~~~- 82 (485)
.++++|||||+|.||.+++++|+++| ++|.+.+|....... ....+. ..++..+.+|++|++++.++++
T Consensus 8 ~~k~~lItGas~giG~~ia~~L~~~G-~~vvl~~r~~~~~~~-------~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~ 79 (254)
T PRK08085 8 AGKNILITGSAQGIGFLLATGLAEYG-AEIIINDITAERAEL-------AVAKLRQEGIKAHAAPFNVTHKQEVEAAIEH 79 (254)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHcC-CEEEEEcCCHHHHHH-------HHHHHHhcCCeEEEEecCCCCHHHHHHHHHH
Confidence 46899999999999999999999999 589888876432111 111111 2457788999999998887764
Q ss_pred ------CCCEEEEcCCCC-------CCCCchhhhHHHHHHHHHHHHHHHHh----cCCCEEEEecCccccccCCCCcCCC
Q 047227 83 ------GAEVVFHMAAPN-------SSINNHKLHHSVNVEGTKNVIDACAE----LKVKRLIYTSSPSVVFDGVHGIING 145 (485)
Q Consensus 83 ------~~d~Vih~aa~~-------~~~~~~~~~~~~nv~~t~~ll~a~~~----~~v~r~V~~SS~~vy~~~~~~~~~~ 145 (485)
+.|+|||+++.. ...++++..+++|+.++.++.+++.. .+.+++|++||.....
T Consensus 80 ~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~--------- 150 (254)
T PRK08085 80 IEKDIGPIDVLINNAGIQRRHPFTEFPEQEWNDVIAVNQTAVFLVSQAVARYMVKRQAGKIINICSMQSEL--------- 150 (254)
T ss_pred HHHhcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEccchhcc---------
Confidence 379999999932 12345667899999999888887664 3457899999864421
Q ss_pred CCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCCh--HHHHHHHHcCCCeEEecCCCce
Q 047227 146 NEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLLV--PSLVAAARAGKSKFIIGDGNNV 220 (485)
Q Consensus 146 ~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~~--~~~~~~~~~g~~~~~~g~g~~~ 220 (485)
+..+...|+.+|+..|.+++.++.+ .|+++.+++||.+..+...... +.+...+.... ..
T Consensus 151 ------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~pG~~~t~~~~~~~~~~~~~~~~~~~~---------p~ 215 (254)
T PRK08085 151 ------GRDTITPYAASKGAVKMLTRGMCVELARHNIQVNGIAPGYFKTEMTKALVEDEAFTAWLCKRT---------PA 215 (254)
T ss_pred ------CCCCCcchHHHHHHHHHHHHHHHHHHHhhCeEEEEEEeCCCCCcchhhhccCHHHHHHHHhcC---------CC
Confidence 1234568999999999999988654 5899999999999887532211 12222222221 12
Q ss_pred eecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCC
Q 047227 221 YDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNM 260 (485)
Q Consensus 221 ~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~ 260 (485)
..+...+|+|.++..++..... -..|+...+.++
T Consensus 216 ~~~~~~~~va~~~~~l~~~~~~------~i~G~~i~~dgg 249 (254)
T PRK08085 216 ARWGDPQELIGAAVFLSSKASD------FVNGHLLFVDGG 249 (254)
T ss_pred CCCcCHHHHHHHHHHHhCcccc------CCcCCEEEECCC
Confidence 3467789999988887652222 256666666554
|
|
| >PRK12938 acetyacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.8e-16 Score=148.49 Aligned_cols=219 Identities=16% Similarity=0.083 Sum_probs=147.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhh-cCCCeEEEEecCCCHHHHHHHhc--
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEAL-RSGRAHYVSFDLRHKAQVLQALQ-- 82 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~-- 82 (485)
++|.+|||||+|+||+++++.|.++| +.|.+..+.... .......... ...++..+.+|+.|.+++.++++
T Consensus 2 ~~k~~lVtG~s~giG~~~a~~l~~~G-~~vv~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 75 (246)
T PRK12938 2 SQRIAYVTGGMGGIGTSICQRLHKDG-FKVVAGCGPNSP-----RRVKWLEDQKALGFDFIASEGNVGDWDSTKAAFDKV 75 (246)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHcC-CEEEEEcCCChH-----HHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHH
Confidence 35789999999999999999999999 577664332110 0001111111 13357788999999988877664
Q ss_pred -----CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHH----HHhcCCCEEEEecCccccccCCCCcCCCC
Q 047227 83 -----GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDA----CAELKVKRLIYTSSPSVVFDGVHGIINGN 146 (485)
Q Consensus 83 -----~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a----~~~~~v~r~V~~SS~~vy~~~~~~~~~~~ 146 (485)
+.|+|||+|+... +..+++..+++|+.++.++.++ +++.+.+++|++||.....
T Consensus 76 ~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~---------- 145 (246)
T PRK12938 76 KAEVGEIDVLVNNAGITRDVVFRKMTREDWTAVIDTNLTSLFNVTKQVIDGMVERGWGRIINISSVNGQK---------- 145 (246)
T ss_pred HHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEEechhccC----------
Confidence 4899999999422 2235677889999997775555 4456677999999864321
Q ss_pred CCCCCCCCCCchHHHHHHHHHHHHHHHhC---CCCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCceeec
Q 047227 147 EALPYPPKHNDFYSATKAEGEALVIKANG---TNGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDF 223 (485)
Q Consensus 147 e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~---~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~ 223 (485)
+..+...|+.+|...+.+.+.+++ ..++++.+++|+.+.+|......+.....+....+ ...+
T Consensus 146 -----~~~~~~~y~~sK~a~~~~~~~l~~~~~~~gi~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~~---------~~~~ 211 (246)
T PRK12938 146 -----GQFGQTNYSTAKAGIHGFTMSLAQEVATKGVTVNTVSPGYIGTDMVKAIRPDVLEKIVATIP---------VRRL 211 (246)
T ss_pred -----CCCCChhHHHHHHHHHHHHHHHHHHhhhhCeEEEEEEecccCCchhhhcChHHHHHHHhcCC---------ccCC
Confidence 123456899999998888777654 35899999999999887543333333333332221 2235
Q ss_pred ccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCC
Q 047227 224 TYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNM 260 (485)
Q Consensus 224 i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~ 260 (485)
..++|++.+++.++.... ....|+.+.+.++
T Consensus 212 ~~~~~v~~~~~~l~~~~~------~~~~g~~~~~~~g 242 (246)
T PRK12938 212 GSPDEIGSIVAWLASEES------GFSTGADFSLNGG 242 (246)
T ss_pred cCHHHHHHHHHHHcCccc------CCccCcEEEECCc
Confidence 568999999988754211 1256778877654
|
|
| >PRK07326 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.7e-16 Score=147.68 Aligned_cols=210 Identities=18% Similarity=0.120 Sum_probs=147.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc---
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ--- 82 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 82 (485)
++++|+||||+|++|++++++|+++| ++|++++|.+..... .........++.++.+|+.|.+++.++++
T Consensus 5 ~~~~ilItGatg~iG~~la~~l~~~g-~~V~~~~r~~~~~~~------~~~~l~~~~~~~~~~~D~~~~~~~~~~~~~~~ 77 (237)
T PRK07326 5 KGKVALITGGSKGIGFAIAEALLAEG-YKVAITARDQKELEE------AAAELNNKGNVLGLAADVRDEADVQRAVDAIV 77 (237)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHCC-CEEEEeeCCHHHHHH------HHHHHhccCcEEEEEccCCCHHHHHHHHHHHH
Confidence 45799999999999999999999999 589999886432110 11111112578899999999998877765
Q ss_pred ----CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHHHhc---CCCEEEEecCccccccCCCCcCCCCCC
Q 047227 83 ----GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDACAEL---KVKRLIYTSSPSVVFDGVHGIINGNEA 148 (485)
Q Consensus 83 ----~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~~~~---~v~r~V~~SS~~vy~~~~~~~~~~~e~ 148 (485)
++|+|||+++... ..++....+++|+.++.++++++.+. +.+++|++||...+.
T Consensus 78 ~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~------------ 145 (237)
T PRK07326 78 AAFGGLDVLIANAGVGHFAPVEELTPEEWRLVIDTNLTGAFYTIKAAVPALKRGGGYIINISSLAGTN------------ 145 (237)
T ss_pred HHcCCCCEEEECCCCCCCCchhhCCHHHHHHHHhhccHHHHHHHHHHHHHHHHCCeEEEEECChhhcc------------
Confidence 5899999998432 22335577899999999998887643 456899999865432
Q ss_pred CCCCCCCCchHHHHHHHHHHHHHHHh---CCCCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCceeeccc
Q 047227 149 LPYPPKHNDFYSATKAEGEALVIKAN---GTNGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFTY 225 (485)
Q Consensus 149 ~~~~~~~~~~Y~~sK~~~E~~~~~~~---~~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~ 225 (485)
+..+...|+.+|...+.+.+.+. ...|++++++||+.+..+..... + . . .....+.
T Consensus 146 ---~~~~~~~y~~sk~a~~~~~~~~~~~~~~~gi~v~~v~pg~~~t~~~~~~-~--------~-------~--~~~~~~~ 204 (237)
T PRK07326 146 ---FFAGGAAYNASKFGLVGFSEAAMLDLRQYGIKVSTIMPGSVATHFNGHT-P--------S-------E--KDAWKIQ 204 (237)
T ss_pred ---CCCCCchHHHHHHHHHHHHHHHHHHhcccCcEEEEEeeccccCcccccc-c--------c-------h--hhhccCC
Confidence 12345679999999988888764 34689999999999876532110 0 0 0 0011367
Q ss_pred HHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCCC
Q 047227 226 VANVAHAHICAERALASEVTVAEKAAGQAYFVTNMES 262 (485)
Q Consensus 226 v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~ 262 (485)
.+|++++++.++... +...+....+.++++
T Consensus 205 ~~d~a~~~~~~l~~~-------~~~~~~~~~~~~~~~ 234 (237)
T PRK07326 205 PEDIAQLVLDLLKMP-------PRTLPSKIEVRPSRP 234 (237)
T ss_pred HHHHHHHHHHHHhCC-------ccccccceEEecCCC
Confidence 899999999987742 224445556665544
|
|
| >PRK12743 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.9e-16 Score=151.56 Aligned_cols=219 Identities=19% Similarity=0.162 Sum_probs=149.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhh-hcCCCeEEEEecCCCHHHHHHHhc---
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEA-LRSGRAHYVSFDLRHKAQVLQALQ--- 82 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~l~~~~~--- 82 (485)
++++|||||+|.||.++++.|+++| ++|.++.+....... . ..... ....++.++.+|++|++++.++++
T Consensus 2 ~k~vlItGas~giG~~~a~~l~~~G-~~V~~~~~~~~~~~~---~--~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 75 (256)
T PRK12743 2 AQVAIVTASDSGIGKACALLLAQQG-FDIGITWHSDEEGAK---E--TAEEVRSHGVRAEIRQLDLSDLPEGAQALDKLI 75 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCC-CEEEEEeCCChHHHH---H--HHHHHHhcCCceEEEEccCCCHHHHHHHHHHHH
Confidence 4689999999999999999999999 588777554321110 0 01111 113468899999999988777664
Q ss_pred ----CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHHHhcC-----CCEEEEecCccccccCCCCcCCCC
Q 047227 83 ----GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDACAELK-----VKRLIYTSSPSVVFDGVHGIINGN 146 (485)
Q Consensus 83 ----~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~~~~~-----v~r~V~~SS~~vy~~~~~~~~~~~ 146 (485)
.+|+|||+++... ..+++...+++|+.++.++++++...- -+++|++||.....
T Consensus 76 ~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~g~ii~isS~~~~~---------- 145 (256)
T PRK12743 76 QRLGRIDVLVNNAGAMTKAPFLDMDFDEWRKIFTVDVDGAFLCSQIAARHMVKQGQGGRIINITSVHEHT---------- 145 (256)
T ss_pred HHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEEEeeccccC----------
Confidence 4899999999322 223556789999999999998876532 25899999864321
Q ss_pred CCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCceeec
Q 047227 147 EALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDF 223 (485)
Q Consensus 147 e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~ 223 (485)
+..+...|+.+|...+.+++.++.+ .+++++.++||.+.++...............+.+ ...+
T Consensus 146 -----~~~~~~~Y~~sK~a~~~l~~~la~~~~~~~i~v~~v~Pg~~~t~~~~~~~~~~~~~~~~~~~---------~~~~ 211 (256)
T PRK12743 146 -----PLPGASAYTAAKHALGGLTKAMALELVEHGILVNAVAPGAIATPMNGMDDSDVKPDSRPGIP---------LGRP 211 (256)
T ss_pred -----CCCCcchhHHHHHHHHHHHHHHHHHhhhhCeEEEEEEeCCccCccccccChHHHHHHHhcCC---------CCCC
Confidence 2345678999999999998887653 5799999999999987533211222211221111 1124
Q ss_pred ccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCC
Q 047227 224 TYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNME 261 (485)
Q Consensus 224 i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~ 261 (485)
.+.+|+|+++..++.... ....|+.+.+.++.
T Consensus 212 ~~~~dva~~~~~l~~~~~------~~~~G~~~~~dgg~ 243 (256)
T PRK12743 212 GDTHEIASLVAWLCSEGA------SYTTGQSLIVDGGF 243 (256)
T ss_pred CCHHHHHHHHHHHhCccc------cCcCCcEEEECCCc
Confidence 578999999988764211 12568888887654
|
|
| >PRK07856 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.5e-16 Score=150.37 Aligned_cols=214 Identities=17% Similarity=0.096 Sum_probs=151.8
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc--
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ-- 82 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 82 (485)
.++|++|||||+|.||+++++.|.++| ++|.+++|.... .....++.++.+|+.|++++.++++
T Consensus 4 ~~~k~~lItGas~gIG~~la~~l~~~g-~~v~~~~r~~~~-------------~~~~~~~~~~~~D~~~~~~~~~~~~~~ 69 (252)
T PRK07856 4 LTGRVVLVTGGTRGIGAGIARAFLAAG-ATVVVCGRRAPE-------------TVDGRPAEFHAADVRDPDQVAALVDAI 69 (252)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCC-CEEEEEeCChhh-------------hhcCCceEEEEccCCCHHHHHHHHHHH
Confidence 457899999999999999999999999 689999886532 0113468899999999988887765
Q ss_pred -----CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHHHh-----cCCCEEEEecCccccccCCCCcCCC
Q 047227 83 -----GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDACAE-----LKVKRLIYTSSPSVVFDGVHGIING 145 (485)
Q Consensus 83 -----~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~~~-----~~v~r~V~~SS~~vy~~~~~~~~~~ 145 (485)
++|+|||+|+... ...+++..+++|+.++.++++++.. .+..++|++||...+.
T Consensus 70 ~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~ii~isS~~~~~--------- 140 (252)
T PRK07856 70 VERHGRLDVLVNNAGGSPYALAAEASPRFHEKIVELNLLAPLLVAQAANAVMQQQPGGGSIVNIGSVSGRR--------- 140 (252)
T ss_pred HHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccCC---------
Confidence 3699999998321 2234567889999999999998764 1346899999976542
Q ss_pred CCCCCCCCCCCchHHHHHHHHHHHHHHHhCCC--CceEEEEecCCcccCCCCCCh--HHHHHHHHcCCCeEEecCCCcee
Q 047227 146 NEALPYPPKHNDFYSATKAEGEALVIKANGTN--GLLTCCIRPSSIFGPGDRLLV--PSLVAAARAGKSKFIIGDGNNVY 221 (485)
Q Consensus 146 ~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~--g~~~~ilRp~~v~Gp~~~~~~--~~~~~~~~~g~~~~~~g~g~~~~ 221 (485)
+......|+.+|...|.+++.++.+. .+++.+++|+.+..+...... +.......... ...
T Consensus 141 ------~~~~~~~Y~~sK~a~~~l~~~la~e~~~~i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~---------~~~ 205 (252)
T PRK07856 141 ------PSPGTAAYGAAKAGLLNLTRSLAVEWAPKVRVNAVVVGLVRTEQSELHYGDAEGIAAVAATV---------PLG 205 (252)
T ss_pred ------CCCCCchhHHHHHHHHHHHHHHHHHhcCCeEEEEEEeccccChHHhhhccCHHHHHHHhhcC---------CCC
Confidence 12345789999999999998877542 289999999998766322110 11111111111 112
Q ss_pred ecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCCC
Q 047227 222 DFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMES 262 (485)
Q Consensus 222 ~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~ 262 (485)
.+..++|+|++++.++.... .-..|..+.+.++..
T Consensus 206 ~~~~p~~va~~~~~L~~~~~------~~i~G~~i~vdgg~~ 240 (252)
T PRK07856 206 RLATPADIAWACLFLASDLA------SYVSGANLEVHGGGE 240 (252)
T ss_pred CCcCHHHHHHHHHHHcCccc------CCccCCEEEECCCcc
Confidence 35678999999988764211 226788888877643
|
|
| >PRK08017 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.2e-16 Score=152.84 Aligned_cols=196 Identities=18% Similarity=0.059 Sum_probs=137.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc-----
Q 047227 8 RLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ----- 82 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~----- 82 (485)
++||||||+|+||.++++.|.++| ++|.+++|..... .. ....+++.+.+|+.|.+++.++++
T Consensus 3 k~vlVtGasg~IG~~la~~l~~~g-~~v~~~~r~~~~~----------~~-~~~~~~~~~~~D~~~~~~~~~~~~~i~~~ 70 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKRRG-YRVLAACRKPDDV----------AR-MNSLGFTGILLDLDDPESVERAADEVIAL 70 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCC-CEEEEEeCCHHHh----------HH-HHhCCCeEEEeecCCHHHHHHHHHHHHHh
Confidence 589999999999999999999999 5888888764311 11 112357889999999887766543
Q ss_pred ---CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHH----HHHHHhcCCCEEEEecCccccccCCCCcCCCCCC
Q 047227 83 ---GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNV----IDACAELKVKRLIYTSSPSVVFDGVHGIINGNEA 148 (485)
Q Consensus 83 ---~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~l----l~a~~~~~v~r~V~~SS~~vy~~~~~~~~~~~e~ 148 (485)
+.|.++|+++... ..++++..+++|+.++.++ ++++++.+.+++|++||...+.
T Consensus 71 ~~~~~~~ii~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~------------ 138 (256)
T PRK08017 71 TDNRLYGLFNNAGFGVYGPLSTISRQQMEQQFSTNFFGTHQLTMLLLPAMLPHGEGRIVMTSSVMGLI------------ 138 (256)
T ss_pred cCCCCeEEEECCCCCCccchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCCEEEEEcCccccc------------
Confidence 3689999999321 2234557889999988775 6777777888999999864331
Q ss_pred CCCCCCCCchHHHHHHHHHHHHHHH---hCCCCceEEEEecCCcccCCCCCChHHHHHHHHcCC-CeEEecCCCceeecc
Q 047227 149 LPYPPKHNDFYSATKAEGEALVIKA---NGTNGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGK-SKFIIGDGNNVYDFT 224 (485)
Q Consensus 149 ~~~~~~~~~~Y~~sK~~~E~~~~~~---~~~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~-~~~~~g~g~~~~~~i 224 (485)
+....+.|+.+|...|.+.+.+ ....+++++++||+.+..+.. .....+. .......+...+.++
T Consensus 139 ---~~~~~~~Y~~sK~~~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~--------~~~~~~~~~~~~~~~~~~~~~~~ 207 (256)
T PRK08017 139 ---STPGRGAYAASKYALEAWSDALRMELRHSGIKVSLIEPGPIRTRFT--------DNVNQTQSDKPVENPGIAARFTL 207 (256)
T ss_pred ---CCCCccHHHHHHHHHHHHHHHHHHHHhhcCCEEEEEeCCCcccchh--------hcccchhhccchhhhHHHhhcCC
Confidence 1234568999999999987654 335689999999987754421 1111111 111122233445689
Q ss_pred cHHHHHHHHHHHHH
Q 047227 225 YVANVAHAHICAER 238 (485)
Q Consensus 225 ~v~D~a~a~~~~~~ 238 (485)
+++|+++++..+++
T Consensus 208 ~~~d~a~~~~~~~~ 221 (256)
T PRK08017 208 GPEAVVPKLRHALE 221 (256)
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999998876
|
|
| >PRK12744 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=2e-16 Score=151.49 Aligned_cols=231 Identities=13% Similarity=0.057 Sum_probs=148.9
Q ss_pred CCC-CCCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhc--CCCeEEEEecCCCHHHH
Q 047227 1 MSG-EENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALR--SGRAHYVSFDLRHKAQV 77 (485)
Q Consensus 1 M~~-~~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~Dl~d~~~l 77 (485)
|+. ..+++++|||||+|+||.++++.|+++| ++|.++++.........+. ..+.+. ..++.++.+|++|++++
T Consensus 1 ~~~~~l~~k~vlItGa~~gIG~~~a~~l~~~G-~~vv~i~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~D~~~~~~~ 76 (257)
T PRK12744 1 MADHSLKGKVVLIAGGAKNLGGLIARDLAAQG-AKAVAIHYNSAASKADAEE---TVAAVKAAGAKAVAFQADLTTAAAV 76 (257)
T ss_pred CCCCCCCCcEEEEECCCchHHHHHHHHHHHCC-CcEEEEecCCccchHHHHH---HHHHHHHhCCcEEEEecCcCCHHHH
Confidence 443 2356899999999999999999999999 5766665443211111111 111111 34688899999999988
Q ss_pred HHHhc-------CCCEEEEcCCCC-------CCCCchhhhHHHHHHHHHHHHHHHHhcC--CCEEEEecCccccccCCCC
Q 047227 78 LQALQ-------GAEVVFHMAAPN-------SSINNHKLHHSVNVEGTKNVIDACAELK--VKRLIYTSSPSVVFDGVHG 141 (485)
Q Consensus 78 ~~~~~-------~~d~Vih~aa~~-------~~~~~~~~~~~~nv~~t~~ll~a~~~~~--v~r~V~~SS~~vy~~~~~~ 141 (485)
.++++ ++|++||+|+.. ...++++..+++|+.++..+++++...- ..++++++|..+...
T Consensus 77 ~~~~~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~iv~~~ss~~~~~---- 152 (257)
T PRK12744 77 EKLFDDAKAAFGRPDIAINTVGKVLKKPIVEISEAEYDEMFAVNSKSAFFFIKEAGRHLNDNGKIVTLVTSLLGAF---- 152 (257)
T ss_pred HHHHHHHHHhhCCCCEEEECCcccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHhhccCCCEEEEecchhccc----
Confidence 87764 489999999931 1223566788999999999999987531 245666543222210
Q ss_pred cCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCC-hHHHHHHHHcCCCeEEecCC
Q 047227 142 IINGNEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLL-VPSLVAAARAGKSKFIIGDG 217 (485)
Q Consensus 142 ~~~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~-~~~~~~~~~~g~~~~~~g~g 217 (485)
......|+.+|...|.+.+.++.+ .++++++++||.+.++..... .+.... .... .....+
T Consensus 153 -----------~~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~v~pg~v~t~~~~~~~~~~~~~---~~~~-~~~~~~ 217 (257)
T PRK12744 153 -----------TPFYSAYAGSKAPVEHFTRAASKEFGARGISVTAVGPGPMDTPFFYPQEGAEAVA---YHKT-AAALSP 217 (257)
T ss_pred -----------CCCcccchhhHHHHHHHHHHHHHHhCcCceEEEEEecCccccchhccccccchhh---cccc-cccccc
Confidence 123467999999999999988755 369999999999976632110 011000 0000 000111
Q ss_pred CceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCC
Q 047227 218 NNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNME 261 (485)
Q Consensus 218 ~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~ 261 (485)
.....+.+++|+|.++..++.. . .-..|+.+++.++.
T Consensus 218 ~~~~~~~~~~dva~~~~~l~~~-~------~~~~g~~~~~~gg~ 254 (257)
T PRK12744 218 FSKTGLTDIEDIVPFIRFLVTD-G------WWITGQTILINGGY 254 (257)
T ss_pred cccCCCCCHHHHHHHHHHhhcc-c------ceeecceEeecCCc
Confidence 1223588999999999988762 1 11457888888764
|
|
| >PRK07024 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.6e-16 Score=152.12 Aligned_cols=190 Identities=15% Similarity=0.074 Sum_probs=138.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhc-CCCeEEEEecCCCHHHHHHHhcC--
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALR-SGRAHYVSFDLRHKAQVLQALQG-- 83 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~Dl~d~~~l~~~~~~-- 83 (485)
+|++|||||+|+||.++++.|.++| ++|.+++|....... ....+. ..++.++.+|++|++++.++++.
T Consensus 2 ~~~vlItGas~gIG~~la~~l~~~G-~~v~~~~r~~~~~~~-------~~~~~~~~~~~~~~~~Dl~~~~~i~~~~~~~~ 73 (257)
T PRK07024 2 PLKVFITGASSGIGQALAREYARQG-ATLGLVARRTDALQA-------FAARLPKAARVSVYAADVRDADALAAAAADFI 73 (257)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHH-------HHHhcccCCeeEEEEcCCCCHHHHHHHHHHHH
Confidence 3799999999999999999999999 699999886432110 111111 12688999999999988777642
Q ss_pred -----CCEEEEcCCCCC--------CCCchhhhHHHHHHHHHHHHH----HHHhcCCCEEEEecCccccccCCCCcCCCC
Q 047227 84 -----AEVVFHMAAPNS--------SINNHKLHHSVNVEGTKNVID----ACAELKVKRLIYTSSPSVVFDGVHGIINGN 146 (485)
Q Consensus 84 -----~d~Vih~aa~~~--------~~~~~~~~~~~nv~~t~~ll~----a~~~~~v~r~V~~SS~~vy~~~~~~~~~~~ 146 (485)
+|++||+++... +.+++...+++|+.++.++++ ++++.+.+++|++||...+.
T Consensus 74 ~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~l~~~~~~~~~~iv~isS~~~~~---------- 143 (257)
T PRK07024 74 AAHGLPDVVIANAGISVGTLTEEREDLAVFREVMDTNYFGMVATFQPFIAPMRAARRGTLVGIASVAGVR---------- 143 (257)
T ss_pred HhCCCCCEEEECCCcCCCccccccCCHHHHHHHHhHhcHHHHHHHHHHHHHHHhcCCCEEEEEechhhcC----------
Confidence 799999999321 113456789999999999776 55666677999999865542
Q ss_pred CCCCCCCCCCchHHHHHHHHHHHHHHHh---CCCCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCceeec
Q 047227 147 EALPYPPKHNDFYSATKAEGEALVIKAN---GTNGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDF 223 (485)
Q Consensus 147 e~~~~~~~~~~~Y~~sK~~~E~~~~~~~---~~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~ 223 (485)
+......|+.+|...+.+.+.++ +.+|++++++||+.+.++.... ... ....+
T Consensus 144 -----~~~~~~~Y~asK~a~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~----------~~~---------~~~~~ 199 (257)
T PRK07024 144 -----GLPGAGAYSASKAAAIKYLESLRVELRPAGVRVVTIAPGYIRTPMTAH----------NPY---------PMPFL 199 (257)
T ss_pred -----CCCCCcchHHHHHHHHHHHHHHHHHhhccCcEEEEEecCCCcCchhhc----------CCC---------CCCCc
Confidence 12234579999999999987765 4568999999999998773210 000 00013
Q ss_pred ccHHHHHHHHHHHHH
Q 047227 224 TYVANVAHAHICAER 238 (485)
Q Consensus 224 i~v~D~a~a~~~~~~ 238 (485)
+..+|+|+.++.++.
T Consensus 200 ~~~~~~a~~~~~~l~ 214 (257)
T PRK07024 200 MDADRFAARAARAIA 214 (257)
T ss_pred cCHHHHHHHHHHHHh
Confidence 579999999998865
|
|
| >PRK06179 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=8.8e-17 Score=155.13 Aligned_cols=158 Identities=20% Similarity=0.176 Sum_probs=125.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc----
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ---- 82 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~---- 82 (485)
+++++||||+|+||+++++.|.++| ++|++.+|...... ...+++++.+|++|++++.++++
T Consensus 4 ~~~vlVtGasg~iG~~~a~~l~~~g-~~V~~~~r~~~~~~-------------~~~~~~~~~~D~~d~~~~~~~~~~~~~ 69 (270)
T PRK06179 4 SKVALVTGASSGIGRATAEKLARAG-YRVFGTSRNPARAA-------------PIPGVELLELDVTDDASVQAAVDEVIA 69 (270)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCC-CEEEEEeCChhhcc-------------ccCCCeeEEeecCCHHHHHHHHHHHHH
Confidence 4689999999999999999999999 68999988643210 12468899999999999888876
Q ss_pred ---CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHH----HhcCCCEEEEecCccccccCCCCcCCCCCC
Q 047227 83 ---GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDAC----AELKVKRLIYTSSPSVVFDGVHGIINGNEA 148 (485)
Q Consensus 83 ---~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~----~~~~v~r~V~~SS~~vy~~~~~~~~~~~e~ 148 (485)
++|+|||+||... ..++.+..+++|+.++.++++++ ++.+.+++|++||...+.
T Consensus 70 ~~g~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~~iv~isS~~~~~------------ 137 (270)
T PRK06179 70 RAGRIDVLVNNAGVGLAGAAEESSIAQAQALFDTNVFGILRMTRAVLPHMRAQGSGRIINISSVLGFL------------ 137 (270)
T ss_pred hCCCCCEEEECCCCCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCceEEEECCccccC------------
Confidence 3799999999421 22345778999999999988884 566788999999976542
Q ss_pred CCCCCCCCchHHHHHHHHHHHHHHHhC---CCCceEEEEecCCcccCC
Q 047227 149 LPYPPKHNDFYSATKAEGEALVIKANG---TNGLLTCCIRPSSIFGPG 193 (485)
Q Consensus 149 ~~~~~~~~~~Y~~sK~~~E~~~~~~~~---~~g~~~~ilRp~~v~Gp~ 193 (485)
+......|+.+|...|.+.+.++. ..|+++++++|+.+.++.
T Consensus 138 ---~~~~~~~Y~~sK~a~~~~~~~l~~el~~~gi~v~~v~pg~~~t~~ 182 (270)
T PRK06179 138 ---PAPYMALYAASKHAVEGYSESLDHEVRQFGIRVSLVEPAYTKTNF 182 (270)
T ss_pred ---CCCCccHHHHHHHHHHHHHHHHHHHHhhhCcEEEEEeCCCccccc
Confidence 122346799999999999887653 468999999999998764
|
|
| >PRK09730 putative NAD(P)-binding oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.1e-16 Score=152.18 Aligned_cols=217 Identities=18% Similarity=0.153 Sum_probs=143.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCceEEEe-ecCCccccCCccchhhhhhhh-cCCCeEEEEecCCCHHHHHHHhc---
Q 047227 8 RLCVVTGGRGFAARHLVEMLIRYDMFSVRIA-DLSDSIALEPHEEQGILGEAL-RSGRAHYVSFDLRHKAQVLQALQ--- 82 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~-~r~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~--- 82 (485)
+++|||||+|+||+++++.|+++| ++|.+. .|..... .+ ...... ...++..+.+|+.|++++.++++
T Consensus 2 ~~~lItGa~g~iG~~l~~~l~~~g-~~v~~~~~~~~~~~----~~--~~~~~~~~~~~~~~~~~D~~d~~~i~~~~~~~~ 74 (247)
T PRK09730 2 AIALVTGGSRGIGRATALLLAQEG-YTVAVNYQQNLHAA----QE--VVNLITQAGGKAFVLQADISDENQVVAMFTAID 74 (247)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCC-CEEEEEeCCChHHH----HH--HHHHHHhCCCeEEEEEccCCCHHHHHHHHHHHH
Confidence 589999999999999999999999 577664 3332110 00 111111 12457889999999998887765
Q ss_pred ----CCCEEEEcCCCCC--------CCCchhhhHHHHHHHHHHHHHHHHhc-------CCCEEEEecCccccccCCCCcC
Q 047227 83 ----GAEVVFHMAAPNS--------SINNHKLHHSVNVEGTKNVIDACAEL-------KVKRLIYTSSPSVVFDGVHGII 143 (485)
Q Consensus 83 ----~~d~Vih~aa~~~--------~~~~~~~~~~~nv~~t~~ll~a~~~~-------~v~r~V~~SS~~vy~~~~~~~~ 143 (485)
+.|+|||+++... ..++....+++|+.++.++.+++... ..++||++||...+.+.
T Consensus 75 ~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g~~v~~sS~~~~~~~----- 149 (247)
T PRK09730 75 QHDEPLAALVNNAGILFTQCTVENLTAERINRVLSTNVTGYFLCCREAVKRMALKHGGSGGAIVNVSSAASRLGA----- 149 (247)
T ss_pred HhCCCCCEEEECCCCCCCCCccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCCcEEEEECchhhccCC-----
Confidence 3689999999421 11234568899999998877765543 13579999997654311
Q ss_pred CCCCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCC-CChHHHHHHHHcCCCeEEecCCCc
Q 047227 144 NGNEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDR-LLVPSLVAAARAGKSKFIIGDGNN 219 (485)
Q Consensus 144 ~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~-~~~~~~~~~~~~g~~~~~~g~g~~ 219 (485)
......|+.+|...|.+++.++.+ .+++++++||+.+|+|... ...+..........+.
T Consensus 150 ---------~~~~~~Y~~sK~~~~~~~~~l~~~~~~~~i~v~~i~pg~~~~~~~~~~~~~~~~~~~~~~~~~-------- 212 (247)
T PRK09730 150 ---------PGEYVDYAASKGAIDTLTTGLSLEVAAQGIRVNCVRPGFIYTEMHASGGEPGRVDRVKSNIPM-------- 212 (247)
T ss_pred ---------CCcccchHhHHHHHHHHHHHHHHHHHHhCeEEEEEEeCCCcCcccccCCCHHHHHHHHhcCCC--------
Confidence 011235999999999988876543 5899999999999998532 1122233333322221
Q ss_pred eeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCC
Q 047227 220 VYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNM 260 (485)
Q Consensus 220 ~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~ 260 (485)
....+++|+|+++..++.... ....|+.|.+.++
T Consensus 213 -~~~~~~~dva~~~~~~~~~~~------~~~~g~~~~~~g~ 246 (247)
T PRK09730 213 -QRGGQPEEVAQAIVWLLSDKA------SYVTGSFIDLAGG 246 (247)
T ss_pred -CCCcCHHHHHHHHHhhcChhh------cCccCcEEecCCC
Confidence 112368999999988764211 1255777777653
|
|
| >PRK06172 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.8e-16 Score=151.41 Aligned_cols=224 Identities=21% Similarity=0.135 Sum_probs=154.1
Q ss_pred CCCCCCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhh-cCCCeEEEEecCCCHHHHHH
Q 047227 1 MSGEENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEAL-RSGRAHYVSFDLRHKAQVLQ 79 (485)
Q Consensus 1 M~~~~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~ 79 (485)
|+...++++++||||+|+||+++++.|.++| ++|.+++|+...... ...... ...++.++.+|+.|.+++.+
T Consensus 1 m~~~l~~k~ilItGas~~iG~~ia~~l~~~G-~~v~~~~r~~~~~~~------~~~~~~~~~~~~~~~~~D~~~~~~i~~ 73 (253)
T PRK06172 1 MSMTFSGKVALVTGGAAGIGRATALAFAREG-AKVVVADRDAAGGEE------TVALIREAGGEALFVACDVTRDAEVKA 73 (253)
T ss_pred CCcCCCCCEEEEeCCCchHHHHHHHHHHHcC-CEEEEEeCCHHHHHH------HHHHHHhcCCceEEEEcCCCCHHHHHH
Confidence 5555667899999999999999999999999 689999887542110 011111 13468899999999988887
Q ss_pred Hhc-------CCCEEEEcCCCCC--------CCCchhhhHHHHHHHHHHHHHHH----HhcCCCEEEEecCccccccCCC
Q 047227 80 ALQ-------GAEVVFHMAAPNS--------SINNHKLHHSVNVEGTKNVIDAC----AELKVKRLIYTSSPSVVFDGVH 140 (485)
Q Consensus 80 ~~~-------~~d~Vih~aa~~~--------~~~~~~~~~~~nv~~t~~ll~a~----~~~~v~r~V~~SS~~vy~~~~~ 140 (485)
+++ ++|+|||+++... ..++++..+++|+.++.++++++ .+.+..++|++||...+..
T Consensus 74 ~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~ii~~sS~~~~~~--- 150 (253)
T PRK06172 74 LVEQTIAAYGRLDYAFNNAGIEIEQGRLAEGSEAEFDAIMGVNVKGVWLCMKYQIPLMLAQGGGAIVNTASVAGLGA--- 150 (253)
T ss_pred HHHHHHHHhCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECchhhccC---
Confidence 765 3699999999321 12355678899999997776654 3445578999999776631
Q ss_pred CcCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCC---hHHHHHHHHcCCCeEEe
Q 047227 141 GIINGNEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLL---VPSLVAAARAGKSKFII 214 (485)
Q Consensus 141 ~~~~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~---~~~~~~~~~~g~~~~~~ 214 (485)
......|+.+|...|.+.+.++.+ .++++.+++||.+-.+..... .+..........+
T Consensus 151 ------------~~~~~~Y~~sKaa~~~~~~~la~e~~~~~i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~---- 214 (253)
T PRK06172 151 ------------APKMSIYAASKHAVIGLTKSAAIEYAKKGIRVNAVCPAVIDTDMFRRAYEADPRKAEFAAAMHP---- 214 (253)
T ss_pred ------------CCCCchhHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCCccChhhhhhcccChHHHHHHhccCC----
Confidence 234568999999999998887754 479999999999865532211 1111111111111
Q ss_pred cCCCceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCC
Q 047227 215 GDGNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNME 261 (485)
Q Consensus 215 g~g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~ 261 (485)
...+...+|+++.+..++.... ....|+.+.+.++.
T Consensus 215 -----~~~~~~p~~ia~~~~~l~~~~~------~~~~G~~i~~dgg~ 250 (253)
T PRK06172 215 -----VGRIGKVEEVASAVLYLCSDGA------SFTTGHALMVDGGA 250 (253)
T ss_pred -----CCCccCHHHHHHHHHHHhCccc------cCcCCcEEEECCCc
Confidence 1235678999999988865322 22678888887753
|
|
| >PRK10538 malonic semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.3e-16 Score=152.02 Aligned_cols=198 Identities=17% Similarity=0.133 Sum_probs=137.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc-----
Q 047227 8 RLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ----- 82 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~----- 82 (485)
|+|+||||+|++|.++++.|+++| ++|.+++|...... . +.... ..++.++.+|+.|.+++.++++
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~G-~~V~~~~r~~~~~~----~---~~~~~-~~~~~~~~~Dl~~~~~i~~~~~~~~~~ 71 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQG-HKVIATGRRQERLQ----E---LKDEL-GDNLYIAQLDVRNRAAIEEMLASLPAE 71 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCC-CEEEEEECCHHHHH----H---HHHHh-ccceEEEEecCCCHHHHHHHHHHHHHH
Confidence 689999999999999999999999 68999988643110 0 11111 3468899999999988877664
Q ss_pred --CCCEEEEcCCCCC--------CCCchhhhHHHHHHHHHHHHHH----HHhcCCCEEEEecCccccccCCCCcCCCCCC
Q 047227 83 --GAEVVFHMAAPNS--------SINNHKLHHSVNVEGTKNVIDA----CAELKVKRLIYTSSPSVVFDGVHGIINGNEA 148 (485)
Q Consensus 83 --~~d~Vih~aa~~~--------~~~~~~~~~~~nv~~t~~ll~a----~~~~~v~r~V~~SS~~vy~~~~~~~~~~~e~ 148 (485)
++|.|||++|... +.+++...+++|+.++.++.++ +++.+.+++|++||...+.
T Consensus 72 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~------------ 139 (248)
T PRK10538 72 WRNIDVLVNNAGLALGLEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVERNHGHIINIGSTAGSW------------ 139 (248)
T ss_pred cCCCCEEEECCCccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECCcccCC------------
Confidence 5899999998321 2234567889999996665555 4556678999999965431
Q ss_pred CCCCCCCCchHHHHHHHHHHHHHHHhC---CCCceEEEEecCCcccCCCCC-ChHHHHHHHHcCCCeEEecCCCceeecc
Q 047227 149 LPYPPKHNDFYSATKAEGEALVIKANG---TNGLLTCCIRPSSIFGPGDRL-LVPSLVAAARAGKSKFIIGDGNNVYDFT 224 (485)
Q Consensus 149 ~~~~~~~~~~Y~~sK~~~E~~~~~~~~---~~g~~~~ilRp~~v~Gp~~~~-~~~~~~~~~~~g~~~~~~g~g~~~~~~i 224 (485)
+..+.+.|+.+|...|.+.+.++. ..++++++++||.+.|+.... .+..-..... . .+ + ...++
T Consensus 140 ---~~~~~~~Y~~sK~~~~~~~~~l~~~~~~~~i~v~~v~pg~i~~~~~~~~~~~~~~~~~~--~---~~-~---~~~~~ 207 (248)
T PRK10538 140 ---PYAGGNVYGATKAFVRQFSLNLRTDLHGTAVRVTDIEPGLVGGTEFSNVRFKGDDGKAE--K---TY-Q---NTVAL 207 (248)
T ss_pred ---CCCCCchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCeecccccchhhccCcHHHHH--h---hc-c---ccCCC
Confidence 123456899999999999888764 357999999999998764211 0000000000 0 00 1 11346
Q ss_pred cHHHHHHHHHHHHH
Q 047227 225 YVANVAHAHICAER 238 (485)
Q Consensus 225 ~v~D~a~a~~~~~~ 238 (485)
..+|+|++++.++.
T Consensus 208 ~~~dvA~~~~~l~~ 221 (248)
T PRK10538 208 TPEDVSEAVWWVAT 221 (248)
T ss_pred CHHHHHHHHHHHhc
Confidence 89999999988864
|
|
| >PRK07814 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=3e-16 Score=150.85 Aligned_cols=218 Identities=18% Similarity=0.128 Sum_probs=150.6
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhh--cCCCeEEEEecCCCHHHHHHHhc
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEAL--RSGRAHYVSFDLRHKAQVLQALQ 82 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~Dl~d~~~l~~~~~ 82 (485)
.+++++|||||+|+||.+++++|+++| ++|++++|....... +...+ ...++.++.+|++|++++.++++
T Consensus 8 ~~~~~vlItGasggIG~~~a~~l~~~G-~~Vi~~~r~~~~~~~-------~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~ 79 (263)
T PRK07814 8 LDDQVAVVTGAGRGLGAAIALAFAEAG-ADVLIAARTESQLDE-------VAEQIRAAGRRAHVVAADLAHPEATAGLAG 79 (263)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCC-CEEEEEeCCHHHHHH-------HHHHHHhcCCcEEEEEccCCCHHHHHHHHH
Confidence 457899999999999999999999999 699999886432110 11111 13468889999999998877664
Q ss_pred -------CCCEEEEcCCCC-------CCCCchhhhHHHHHHHHHHHHHHHHh-----cCCCEEEEecCccccccCCCCcC
Q 047227 83 -------GAEVVFHMAAPN-------SSINNHKLHHSVNVEGTKNVIDACAE-----LKVKRLIYTSSPSVVFDGVHGII 143 (485)
Q Consensus 83 -------~~d~Vih~aa~~-------~~~~~~~~~~~~nv~~t~~ll~a~~~-----~~v~r~V~~SS~~vy~~~~~~~~ 143 (485)
++|+|||+|+.. ...+++...+++|+.++.++.+++.. .+.+++|++||.....
T Consensus 80 ~~~~~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~iv~~sS~~~~~------- 152 (263)
T PRK07814 80 QAVEAFGRLDIVVNNVGGTMPNPLLSTSTKDLADAFTFNVATAHALTVAAVPLMLEHSGGGSVINISSTMGRL------- 152 (263)
T ss_pred HHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhcHHHHHHHHHHHHHHHhhcCCeEEEEEccccccC-------
Confidence 589999999832 12245677899999999999999874 3457899999854321
Q ss_pred CCCCCCCCCCCCCchHHHHHHHHHHHHHHHhCC--CCceEEEEecCCcccCCCCCC--hHHHHHHHHcCCCeEEecCCCc
Q 047227 144 NGNEALPYPPKHNDFYSATKAEGEALVIKANGT--NGLLTCCIRPSSIFGPGDRLL--VPSLVAAARAGKSKFIIGDGNN 219 (485)
Q Consensus 144 ~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~--~g~~~~ilRp~~v~Gp~~~~~--~~~~~~~~~~g~~~~~~g~g~~ 219 (485)
+..+...|+.+|..+|.+++.++.+ .+++++.++|+.+..+..... -..+........ .
T Consensus 153 --------~~~~~~~Y~~sK~a~~~~~~~~~~e~~~~i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~---------~ 215 (263)
T PRK07814 153 --------AGRGFAAYGTAKAALAHYTRLAALDLCPRIRVNAIAPGSILTSALEVVAANDELRAPMEKAT---------P 215 (263)
T ss_pred --------CCCCCchhHHHHHHHHHHHHHHHHHHCCCceEEEEEeCCCcCchhhhccCCHHHHHHHHhcC---------C
Confidence 1245678999999999999887653 258899999999865531110 011221111111 1
Q ss_pred eeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCC
Q 047227 220 VYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNM 260 (485)
Q Consensus 220 ~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~ 260 (485)
......++|+|++++.++..... ...|+.+.+.++
T Consensus 216 ~~~~~~~~~va~~~~~l~~~~~~------~~~g~~~~~~~~ 250 (263)
T PRK07814 216 LRRLGDPEDIAAAAVYLASPAGS------YLTGKTLEVDGG 250 (263)
T ss_pred CCCCcCHHHHHHHHHHHcCcccc------CcCCCEEEECCC
Confidence 12356789999999988652211 255677766553
|
|
| >PRK09242 tropinone reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.5e-16 Score=150.84 Aligned_cols=222 Identities=15% Similarity=0.090 Sum_probs=152.5
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc--
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ-- 82 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 82 (485)
..+|++|||||+|.||+++++.|.++| ++|++++|..........+ +.......++.++.+|+.|++++.++++
T Consensus 7 ~~~k~~lItGa~~gIG~~~a~~l~~~G-~~v~~~~r~~~~~~~~~~~---l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 82 (257)
T PRK09242 7 LDGQTALITGASKGIGLAIAREFLGLG-ADVLIVARDADALAQARDE---LAEEFPEREVHGLAADVSDDEDRRAILDWV 82 (257)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHH---HHhhCCCCeEEEEECCCCCHHHHHHHHHHH
Confidence 356899999999999999999999999 6899998864321110000 1111113468889999999988766654
Q ss_pred -----CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHHH----hcCCCEEEEecCccccccCCCCcCCCC
Q 047227 83 -----GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDACA----ELKVKRLIYTSSPSVVFDGVHGIINGN 146 (485)
Q Consensus 83 -----~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~~----~~~v~r~V~~SS~~vy~~~~~~~~~~~ 146 (485)
+.|+|||+++... ..++++..+++|+.++.++++++. +.+.+++|++||...+.
T Consensus 83 ~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~~sS~~~~~---------- 152 (257)
T PRK09242 83 EDHWDGLHILVNNAGGNIRKAAIDYTEDEWRGIFETNLFSAFELSRYAHPLLKQHASSAIVNIGSVSGLT---------- 152 (257)
T ss_pred HHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCceEEEECccccCC----------
Confidence 4799999999421 234566788999999999988875 34567999999976653
Q ss_pred CCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCCh--HHHHHHHHcCCCeEEecCCCcee
Q 047227 147 EALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLLV--PSLVAAARAGKSKFIIGDGNNVY 221 (485)
Q Consensus 147 e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~~--~~~~~~~~~g~~~~~~g~g~~~~ 221 (485)
+..+...|+.+|...+.+++.++.+ .+++++.++|+.+.++...... +.+........+. .
T Consensus 153 -----~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~i~Pg~i~t~~~~~~~~~~~~~~~~~~~~~~---------~ 218 (257)
T PRK09242 153 -----HVRSGAPYGMTKAALLQMTRNLAVEWAEDGIRVNAVAPWYIRTPLTSGPLSDPDYYEQVIERTPM---------R 218 (257)
T ss_pred -----CCCCCcchHHHHHHHHHHHHHHHHHHHHhCeEEEEEEECCCCCcccccccCChHHHHHHHhcCCC---------C
Confidence 1234567999999999999887643 5899999999999887543221 2222222222211 1
Q ss_pred ecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCC
Q 047227 222 DFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNM 260 (485)
Q Consensus 222 ~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~ 260 (485)
-+...+|++.++..++..... ...|+.+.+.++
T Consensus 219 ~~~~~~~va~~~~~l~~~~~~------~~~g~~i~~~gg 251 (257)
T PRK09242 219 RVGEPEEVAAAVAFLCMPAAS------YITGQCIAVDGG 251 (257)
T ss_pred CCcCHHHHHHHHHHHhCcccc------cccCCEEEECCC
Confidence 244579999999887642111 245777777654
|
|
| >PRK09291 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.9e-16 Score=151.54 Aligned_cols=161 Identities=17% Similarity=0.163 Sum_probs=119.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhh--hcCCCeEEEEecCCCHHHHHHHhc-C
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEA--LRSGRAHYVSFDLRHKAQVLQALQ-G 83 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~Dl~d~~~l~~~~~-~ 83 (485)
++++|||||+|+||+++++.|+++| +.|++++|....... +... ....++.++.+|+.|++++.+++. +
T Consensus 2 ~~~vlVtGasg~iG~~ia~~l~~~G-~~v~~~~r~~~~~~~-------~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 73 (257)
T PRK09291 2 SKTILITGAGSGFGREVALRLARKG-HNVIAGVQIAPQVTA-------LRAEAARRGLALRVEKLDLTDAIDRAQAAEWD 73 (257)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHH-------HHHHHHhcCCcceEEEeeCCCHHHHHHHhcCC
Confidence 4689999999999999999999999 689888876431100 1111 112468899999999999998887 7
Q ss_pred CCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHH----HHHhcCCCEEEEecCccccccCCCCcCCCCCCCCCC
Q 047227 84 AEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVID----ACAELKVKRLIYTSSPSVVFDGVHGIINGNEALPYP 152 (485)
Q Consensus 84 ~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~----a~~~~~v~r~V~~SS~~vy~~~~~~~~~~~e~~~~~ 152 (485)
+|+|||+|+... ..++....+++|+.++.++.+ .+++.+.+++|++||...+..
T Consensus 74 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~SS~~~~~~--------------- 138 (257)
T PRK09291 74 VDVLLNNAGIGEAGAVVDIPVELVRELFETNVFGPLELTQGFVRKMVARGKGKVVFTSSMAGLIT--------------- 138 (257)
T ss_pred CCEEEECCCcCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCceEEEEcChhhccC---------------
Confidence 999999999321 122345577889888776654 445566789999999654321
Q ss_pred CCCCchHHHHHHHHHHHHHHHhC---CCCceEEEEecCCcc
Q 047227 153 PKHNDFYSATKAEGEALVIKANG---TNGLLTCCIRPSSIF 190 (485)
Q Consensus 153 ~~~~~~Y~~sK~~~E~~~~~~~~---~~g~~~~ilRp~~v~ 190 (485)
......|+.+|...|.+.+.+.. ..|++++++||+.+.
T Consensus 139 ~~~~~~Y~~sK~a~~~~~~~l~~~~~~~gi~~~~v~pg~~~ 179 (257)
T PRK09291 139 GPFTGAYCASKHALEAIAEAMHAELKPFGIQVATVNPGPYL 179 (257)
T ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHhcCcEEEEEecCccc
Confidence 12346799999999998877653 368999999999864
|
|
| >PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.4e-16 Score=149.70 Aligned_cols=218 Identities=13% Similarity=0.140 Sum_probs=152.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhc--CCCeEEEEecCCCHHHHHHHhc-
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALR--SGRAHYVSFDLRHKAQVLQALQ- 82 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~Dl~d~~~l~~~~~- 82 (485)
++++||||||+|+||+++++.|.++| ++|.+++|....... ....+. ..++.++.+|++|.+++.++++
T Consensus 10 ~~k~vlVtG~s~gIG~~la~~l~~~G-~~vv~~~r~~~~~~~-------~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~ 81 (255)
T PRK06113 10 DGKCAIITGAGAGIGKEIAITFATAG-ASVVVSDINADAANH-------VVDEIQQLGGQAFACRCDITSEQELSALADF 81 (255)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC-CeEEEEeCCHHHHHH-------HHHHHHhcCCcEEEEEccCCCHHHHHHHHHH
Confidence 46899999999999999999999999 588888775431110 111111 2467888999999998877654
Q ss_pred ------CCCEEEEcCCCCC------CCCchhhhHHHHHHHHHHHHHHHHh----cCCCEEEEecCccccccCCCCcCCCC
Q 047227 83 ------GAEVVFHMAAPNS------SINNHKLHHSVNVEGTKNVIDACAE----LKVKRLIYTSSPSVVFDGVHGIINGN 146 (485)
Q Consensus 83 ------~~d~Vih~aa~~~------~~~~~~~~~~~nv~~t~~ll~a~~~----~~v~r~V~~SS~~vy~~~~~~~~~~~ 146 (485)
++|+|||+++... ..+++...+++|+.++.++++++.. .+..++|++||.+...
T Consensus 82 ~~~~~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~---------- 151 (255)
T PRK06113 82 ALSKLGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTITSMAAEN---------- 151 (255)
T ss_pred HHHHcCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCcEEEEEecccccC----------
Confidence 4799999999321 1234556689999999999999863 3446899999965431
Q ss_pred CCCCCCCCCCchHHHHHHHHHHHHHHHhC---CCCceEEEEecCCcccCCCCCC-hHHHHHHHHcCCCeEEecCCCceee
Q 047227 147 EALPYPPKHNDFYSATKAEGEALVIKANG---TNGLLTCCIRPSSIFGPGDRLL-VPSLVAAARAGKSKFIIGDGNNVYD 222 (485)
Q Consensus 147 e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~---~~g~~~~ilRp~~v~Gp~~~~~-~~~~~~~~~~g~~~~~~g~g~~~~~ 222 (485)
+..+...|+.+|...+.+++.++. ..++++.++.|+.+..+..... .+.+.....+.. ....
T Consensus 152 -----~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~i~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~---------~~~~ 217 (255)
T PRK06113 152 -----KNINMTSYASSKAAASHLVRNMAFDLGEKNIRVNGIAPGAILTDALKSVITPEIEQKMLQHT---------PIRR 217 (255)
T ss_pred -----CCCCcchhHHHHHHHHHHHHHHHHHhhhhCeEEEEEecccccccccccccCHHHHHHHHhcC---------CCCC
Confidence 123456799999999999988764 3579999999999876543221 222322222221 1123
Q ss_pred cccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCC
Q 047227 223 FTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNME 261 (485)
Q Consensus 223 ~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~ 261 (485)
+..++|+++++..++.... .-..|+.+++.++.
T Consensus 218 ~~~~~d~a~~~~~l~~~~~------~~~~G~~i~~~gg~ 250 (255)
T PRK06113 218 LGQPQDIANAALFLCSPAA------SWVSGQILTVSGGG 250 (255)
T ss_pred CcCHHHHHHHHHHHcCccc------cCccCCEEEECCCc
Confidence 6688999999998865211 12568899998864
|
|
| >PRK06057 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.4e-16 Score=149.73 Aligned_cols=221 Identities=16% Similarity=0.122 Sum_probs=144.9
Q ss_pred CCCCCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHh
Q 047227 2 SGEENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQAL 81 (485)
Q Consensus 2 ~~~~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~ 81 (485)
+...++++|+||||+|+||.++++.|.++| ++|.+++|+.... ......-+..++.+|+.|.+++.+++
T Consensus 2 ~~~~~~~~vlItGasggIG~~~a~~l~~~G-~~v~~~~r~~~~~----------~~~~~~~~~~~~~~D~~~~~~~~~~~ 70 (255)
T PRK06057 2 SQRLAGRVAVITGGGSGIGLATARRLAAEG-ATVVVGDIDPEAG----------KAAADEVGGLFVPTDVTDEDAVNALF 70 (255)
T ss_pred CccCCCCEEEEECCCchHHHHHHHHHHHcC-CEEEEEeCCHHHH----------HHHHHHcCCcEEEeeCCCHHHHHHHH
Confidence 344567899999999999999999999999 6899988764311 11111112367899999999888777
Q ss_pred c-------CCCEEEEcCCCCCC---------CCchhhhHHHHHHHHHHHHHHHH----hcCCCEEEEecCcc-ccccCCC
Q 047227 82 Q-------GAEVVFHMAAPNSS---------INNHKLHHSVNVEGTKNVIDACA----ELKVKRLIYTSSPS-VVFDGVH 140 (485)
Q Consensus 82 ~-------~~d~Vih~aa~~~~---------~~~~~~~~~~nv~~t~~ll~a~~----~~~v~r~V~~SS~~-vy~~~~~ 140 (485)
+ ++|+|||+|+.... .+..+..+++|+.++.++++++. +.+..++|++||.. +++.
T Consensus 71 ~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~g~iv~~sS~~~~~g~--- 147 (255)
T PRK06057 71 DTAAETYGSVDIAFNNAGISPPEDDSILNTGLDAWQRVQDVNLTSVYLCCKAALPHMVRQGKGSIINTASFVAVMGS--- 147 (255)
T ss_pred HHHHHHcCCCCEEEECCCcCCCCCCCcccCCHHHHHHHHHHhcHHHHHHHHHHHHHHHHhCCcEEEEEcchhhccCC---
Confidence 5 47999999983211 12356788899999887776654 44556899999854 3321
Q ss_pred CcCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhC---CCCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCC
Q 047227 141 GIINGNEALPYPPKHNDFYSATKAEGEALVIKANG---TNGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDG 217 (485)
Q Consensus 141 ~~~~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~---~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g 217 (485)
..+...|+.+|+..+.+.+.++. ..+++++++|||.+.+|.....+..-...... ......
T Consensus 148 ------------~~~~~~Y~~sKaal~~~~~~l~~~~~~~gi~v~~i~pg~v~t~~~~~~~~~~~~~~~~--~~~~~~-- 211 (255)
T PRK06057 148 ------------ATSQISYTASKGGVLAMSRELGVQFARQGIRVNALCPGPVNTPLLQELFAKDPERAAR--RLVHVP-- 211 (255)
T ss_pred ------------CCCCcchHHHHHHHHHHHHHHHHHHHhhCcEEEEEeeCCcCCchhhhhccCCHHHHHH--HHhcCC--
Confidence 12345799999877777665432 34899999999999887532211100000000 000001
Q ss_pred CceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCC
Q 047227 218 NNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNM 260 (485)
Q Consensus 218 ~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~ 260 (485)
...+..++|+++++..++... .....|+.+.+.++
T Consensus 212 --~~~~~~~~~~a~~~~~l~~~~------~~~~~g~~~~~~~g 246 (255)
T PRK06057 212 --MGRFAEPEEIAAAVAFLASDD------ASFITASTFLVDGG 246 (255)
T ss_pred --CCCCcCHHHHHHHHHHHhCcc------ccCccCcEEEECCC
Confidence 124788999999988765421 12255777777654
|
|
| >PRK08277 D-mannonate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.8e-16 Score=151.38 Aligned_cols=218 Identities=20% Similarity=0.172 Sum_probs=149.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhh-cCCCeEEEEecCCCHHHHHHHhc--
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEAL-RSGRAHYVSFDLRHKAQVLQALQ-- 82 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~-- 82 (485)
.+++++||||+|+||+++++.|.++| ++|.+++|....... ...... ...++.++.+|+.|.+++.++++
T Consensus 9 ~~k~vlVtGas~giG~~ia~~l~~~G-~~V~~~~r~~~~~~~------~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~ 81 (278)
T PRK08277 9 KGKVAVITGGGGVLGGAMAKELARAG-AKVAILDRNQEKAEA------VVAEIKAAGGEALAVKADVLDKESLEQARQQI 81 (278)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCC-CEEEEEeCCHHHHHH------HHHHHHhcCCeEEEEECCCCCHHHHHHHHHHH
Confidence 46899999999999999999999999 589998886431110 111111 12357889999999988877664
Q ss_pred -----CCCEEEEcCCCCC----------------------CCCchhhhHHHHHHHHHHHHHH----HHhcCCCEEEEecC
Q 047227 83 -----GAEVVFHMAAPNS----------------------SINNHKLHHSVNVEGTKNVIDA----CAELKVKRLIYTSS 131 (485)
Q Consensus 83 -----~~d~Vih~aa~~~----------------------~~~~~~~~~~~nv~~t~~ll~a----~~~~~v~r~V~~SS 131 (485)
++|+|||+|+... ..+++...+++|+.++..+.++ +++.+..++|++||
T Consensus 82 ~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~ii~isS 161 (278)
T PRK08277 82 LEDFGPCDILINGAGGNHPKATTDNEFHELIEPTKTFFDLDEEGFEFVFDLNLLGTLLPTQVFAKDMVGRKGGNIINISS 161 (278)
T ss_pred HHHcCCCCEEEECCCCCCcccccccccccccccccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEcc
Confidence 5899999999321 1234566789999998866554 44455678999999
Q ss_pred ccccccCCCCcCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCCh-------HHH
Q 047227 132 PSVVFDGVHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLLV-------PSL 201 (485)
Q Consensus 132 ~~vy~~~~~~~~~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~~-------~~~ 201 (485)
...+. +..+...|+.+|...+.+++.++.+ .++++.+++|+.+..+....+. ...
T Consensus 162 ~~~~~---------------~~~~~~~Y~~sK~a~~~l~~~la~e~~~~girvn~v~Pg~v~t~~~~~~~~~~~~~~~~~ 226 (278)
T PRK08277 162 MNAFT---------------PLTKVPAYSAAKAAISNFTQWLAVHFAKVGIRVNAIAPGFFLTEQNRALLFNEDGSLTER 226 (278)
T ss_pred chhcC---------------CCCCCchhHHHHHHHHHHHHHHHHHhCccCeEEEEEEeccCcCcchhhhhccccccchhH
Confidence 87763 1234567999999999999887654 4799999999999887432111 111
Q ss_pred HHHHHcCCCeEEecCCCceeecccHHHHHHHHHHHHHH-hccccchhhccCCcEEEeeCC
Q 047227 202 VAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICAERA-LASEVTVAEKAAGQAYFVTNM 260 (485)
Q Consensus 202 ~~~~~~g~~~~~~g~g~~~~~~i~v~D~a~a~~~~~~~-~~~~~~~~~~~~g~~ynv~~~ 260 (485)
....... .....+...+|+|++++.++.. .. .-..|+...+.++
T Consensus 227 ~~~~~~~---------~p~~r~~~~~dva~~~~~l~s~~~~------~~~tG~~i~vdgG 271 (278)
T PRK08277 227 ANKILAH---------TPMGRFGKPEELLGTLLWLADEKAS------SFVTGVVLPVDGG 271 (278)
T ss_pred HHHHhcc---------CCccCCCCHHHHHHHHHHHcCcccc------CCcCCCEEEECCC
Confidence 1111111 1223466789999999887542 11 1256777777654
|
|
| >PRK07069 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.7e-16 Score=151.33 Aligned_cols=215 Identities=18% Similarity=0.178 Sum_probs=144.3
Q ss_pred EEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhc----CCCeEEEEecCCCHHHHHHHhc--
Q 047227 9 LCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALR----SGRAHYVSFDLRHKAQVLQALQ-- 82 (485)
Q Consensus 9 ~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~----~~~v~~~~~Dl~d~~~l~~~~~-- 82 (485)
+++||||+|+||+++++.|.++| ++|++++|...... ++ +...+. ...+..+.+|++|.+++.++++
T Consensus 1 ~ilVtG~~~~iG~~~a~~l~~~G-~~v~~~~r~~~~~~---~~---~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 73 (251)
T PRK07069 1 RAFITGAAGGLGRAIARRMAEQG-AKVFLTDINDAAGL---DA---FAAEINAAHGEGVAFAAVQDVTDEAQWQALLAQA 73 (251)
T ss_pred CEEEECCCChHHHHHHHHHHHCC-CEEEEEeCCcchHH---HH---HHHHHHhcCCCceEEEEEeecCCHHHHHHHHHHH
Confidence 48999999999999999999999 69999987632111 00 111111 1234567899999998877664
Q ss_pred -----CCCEEEEcCCCCC-------CCCchhhhHHHHHH----HHHHHHHHHHhcCCCEEEEecCccccccCCCCcCCCC
Q 047227 83 -----GAEVVFHMAAPNS-------SINNHKLHHSVNVE----GTKNVIDACAELKVKRLIYTSSPSVVFDGVHGIINGN 146 (485)
Q Consensus 83 -----~~d~Vih~aa~~~-------~~~~~~~~~~~nv~----~t~~ll~a~~~~~v~r~V~~SS~~vy~~~~~~~~~~~ 146 (485)
++|+|||+|+... ..++....+++|+. ++++++.++++.+.+++|++||...+..
T Consensus 74 ~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~ii~~ss~~~~~~--------- 144 (251)
T PRK07069 74 ADAMGGLSVLVNNAGVGSFGAIEQIELDEWRRVMAINVESIFLGCKHALPYLRASQPASIVNISSVAAFKA--------- 144 (251)
T ss_pred HHHcCCccEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCcEEEEecChhhccC---------
Confidence 4799999999322 12234566788887 7888888888888889999999877631
Q ss_pred CCCCCCCCCCchHHHHHHHHHHHHHHHhCC-----CCceEEEEecCCcccCCCCCChH-----HHHHHHHcCCCeEEecC
Q 047227 147 EALPYPPKHNDFYSATKAEGEALVIKANGT-----NGLLTCCIRPSSIFGPGDRLLVP-----SLVAAARAGKSKFIIGD 216 (485)
Q Consensus 147 e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~-----~g~~~~ilRp~~v~Gp~~~~~~~-----~~~~~~~~g~~~~~~g~ 216 (485)
......|+.+|...+.+.+.++.+ .+++++.++|+.+.+|....... .....+.++.
T Consensus 145 ------~~~~~~Y~~sK~a~~~~~~~la~e~~~~~~~i~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~------- 211 (251)
T PRK07069 145 ------EPDYTAYNASKAAVASLTKSIALDCARRGLDVRCNSIHPTFIRTGIVDPIFQRLGEEEATRKLARGV------- 211 (251)
T ss_pred ------CCCCchhHHHHHHHHHHHHHHHHHhcccCCcEEEEEEeecccCCcchhHHhhhccchhHHHHHhccC-------
Confidence 223457999999999998876533 25899999999998875332111 1111111111
Q ss_pred CCceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCC
Q 047227 217 GNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNM 260 (485)
Q Consensus 217 g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~ 260 (485)
+...+.+++|+|.+++.++.... ....|+.+.+.++
T Consensus 212 --~~~~~~~~~~va~~~~~l~~~~~------~~~~g~~i~~~~g 247 (251)
T PRK07069 212 --PLGRLGEPDDVAHAVLYLASDES------RFVTGAELVIDGG 247 (251)
T ss_pred --CCCCCcCHHHHHHHHHHHcCccc------cCccCCEEEECCC
Confidence 12345679999999988754211 1245666655443
|
|
| >PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.1e-15 Score=144.39 Aligned_cols=211 Identities=14% Similarity=0.113 Sum_probs=148.7
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCH-HHHHHHhcC
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHK-AQVLQALQG 83 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~-~~l~~~~~~ 83 (485)
.++|+++||||+|+||+++++.|.++| ++|++++|..... ...++.++.+|++|+ +++.+.+.+
T Consensus 3 l~~k~~lVtGas~~iG~~ia~~l~~~G-~~v~~~~r~~~~~--------------~~~~~~~~~~D~~~~~~~~~~~~~~ 67 (235)
T PRK06550 3 FMTKTVLITGAASGIGLAQARAFLAQG-AQVYGVDKQDKPD--------------LSGNFHFLQLDLSDDLEPLFDWVPS 67 (235)
T ss_pred CCCCEEEEcCCCchHHHHHHHHHHHCC-CEEEEEeCCcccc--------------cCCcEEEEECChHHHHHHHHHhhCC
Confidence 346899999999999999999999999 5888888764311 023678899999997 444444556
Q ss_pred CCEEEEcCCCC---C-----CCCchhhhHHHHHHHHHHHHHHHHh----cCCCEEEEecCccccccCCCCcCCCCCCCCC
Q 047227 84 AEVVFHMAAPN---S-----SINNHKLHHSVNVEGTKNVIDACAE----LKVKRLIYTSSPSVVFDGVHGIINGNEALPY 151 (485)
Q Consensus 84 ~d~Vih~aa~~---~-----~~~~~~~~~~~nv~~t~~ll~a~~~----~~v~r~V~~SS~~vy~~~~~~~~~~~e~~~~ 151 (485)
+|+|||+|+.. . ..++++..+++|+.++.++++++.. .+.+++|++||...+..
T Consensus 68 id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~-------------- 133 (235)
T PRK06550 68 VDILCNTAGILDDYKPLLDTSLEEWQHIFDTNLTSTFLLTRAYLPQMLERKSGIIINMCSIASFVA-------------- 133 (235)
T ss_pred CCEEEECCCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcChhhccC--------------
Confidence 99999999832 1 1234567899999999999888764 34568999999765421
Q ss_pred CCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCC-Ch-HHHHHHHHcCCCeEEecCCCceeecccH
Q 047227 152 PPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRL-LV-PSLVAAARAGKSKFIIGDGNNVYDFTYV 226 (485)
Q Consensus 152 ~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~-~~-~~~~~~~~~g~~~~~~g~g~~~~~~i~v 226 (485)
......|+.+|...+.+.+.++.+ .|+++++++|+.+.++.... +. ..+........ ....+...
T Consensus 134 -~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~ 203 (235)
T PRK06550 134 -GGGGAAYTASKHALAGFTKQLALDYAKDGIQVFGIAPGAVKTPMTAADFEPGGLADWVARET---------PIKRWAEP 203 (235)
T ss_pred -CCCCcccHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCCccCcccccccCchHHHHHHhccC---------CcCCCCCH
Confidence 123457999999999888876654 48999999999998875321 11 11222222221 12346778
Q ss_pred HHHHHHHHHHHHHhccccchhhccCCcEEEeeCC
Q 047227 227 ANVAHAHICAERALASEVTVAEKAAGQAYFVTNM 260 (485)
Q Consensus 227 ~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~ 260 (485)
+|+|++++.++..... ...|+.+.+.++
T Consensus 204 ~~~a~~~~~l~s~~~~------~~~g~~~~~~gg 231 (235)
T PRK06550 204 EEVAELTLFLASGKAD------YMQGTIVPIDGG 231 (235)
T ss_pred HHHHHHHHHHcChhhc------cCCCcEEEECCc
Confidence 9999999988642221 256777777654
|
|
| >PRK05650 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=6.6e-16 Score=149.05 Aligned_cols=199 Identities=18% Similarity=0.123 Sum_probs=138.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhh-hcCCCeEEEEecCCCHHHHHHHhc----
Q 047227 8 RLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEA-LRSGRAHYVSFDLRHKAQVLQALQ---- 82 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~l~~~~~---- 82 (485)
|++|||||+|+||+++++.|.++| ++|++.+|....... ..... ....++.++.+|+.|.+++.++++
T Consensus 1 ~~vlVtGasggIG~~la~~l~~~g-~~V~~~~r~~~~~~~------~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~i~~ 73 (270)
T PRK05650 1 NRVMITGAASGLGRAIALRWAREG-WRLALADVNEEGGEE------TLKLLREAGGDGFYQRCDVRDYSQLTALAQACEE 73 (270)
T ss_pred CEEEEecCCChHHHHHHHHHHHCC-CEEEEEeCCHHHHHH------HHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHH
Confidence 579999999999999999999999 689888876431110 01111 113468889999999988877764
Q ss_pred ---CCCEEEEcCCCCCC-------CCchhhhHHHHHHHHHHHHHH----HHhcCCCEEEEecCccccccCCCCcCCCCCC
Q 047227 83 ---GAEVVFHMAAPNSS-------INNHKLHHSVNVEGTKNVIDA----CAELKVKRLIYTSSPSVVFDGVHGIINGNEA 148 (485)
Q Consensus 83 ---~~d~Vih~aa~~~~-------~~~~~~~~~~nv~~t~~ll~a----~~~~~v~r~V~~SS~~vy~~~~~~~~~~~e~ 148 (485)
++|+|||+++.... .++.+..+++|+.++.++.++ +++.+.+++|++||...+.
T Consensus 74 ~~~~id~lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~vsS~~~~~------------ 141 (270)
T PRK05650 74 KWGGIDVIVNNAGVASGGFFEELSLEDWDWQIAINLMGVVKGCKAFLPLFKRQKSGRIVNIASMAGLM------------ 141 (270)
T ss_pred HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhCCCCEEEEECChhhcC------------
Confidence 58999999993221 123455678998887776555 5666778999999976652
Q ss_pred CCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCC---hHHHHHHHHcCCCeEEecCCCceee
Q 047227 149 LPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLL---VPSLVAAARAGKSKFIIGDGNNVYD 222 (485)
Q Consensus 149 ~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~---~~~~~~~~~~g~~~~~~g~g~~~~~ 222 (485)
+......|+.+|+..+.+.+.++.+ .|+++++++|+.+..+..... .+......... ....
T Consensus 142 ---~~~~~~~Y~~sKaa~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~----------~~~~ 208 (270)
T PRK05650 142 ---QGPAMSSYNVAKAGVVALSETLLVELADDEIGVHVVCPSFFQTNLLDSFRGPNPAMKAQVGKL----------LEKS 208 (270)
T ss_pred ---CCCCchHHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCccccCcccccccCchhHHHHHHHH----------hhcC
Confidence 1234578999999988777766643 589999999999987743211 11111111000 0123
Q ss_pred cccHHHHHHHHHHHHH
Q 047227 223 FTYVANVAHAHICAER 238 (485)
Q Consensus 223 ~i~v~D~a~a~~~~~~ 238 (485)
+++++|+|+.++.+++
T Consensus 209 ~~~~~~vA~~i~~~l~ 224 (270)
T PRK05650 209 PITAADIADYIYQQVA 224 (270)
T ss_pred CCCHHHHHHHHHHHHh
Confidence 5789999999998876
|
|
| >PRK08643 acetoin reductase; Validated | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.7e-16 Score=150.49 Aligned_cols=220 Identities=21% Similarity=0.216 Sum_probs=146.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhc--CCCeEEEEecCCCHHHHHHHhc--
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALR--SGRAHYVSFDLRHKAQVLQALQ-- 82 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~Dl~d~~~l~~~~~-- 82 (485)
++++|||||+|+||.++++.|+++| ++|.+++|....... ....+. ..++.++.+|++|++++.++++
T Consensus 2 ~k~~lItGas~giG~~la~~l~~~G-~~v~~~~r~~~~~~~-------~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 73 (256)
T PRK08643 2 SKVALVTGAGQGIGFAIAKRLVEDG-FKVAIVDYNEETAQA-------AADKLSKDGGKAIAVKADVSDRDQVFAAVRQV 73 (256)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCC-CEEEEEeCCHHHHHH-------HHHHHHhcCCeEEEEECCCCCHHHHHHHHHHH
Confidence 4789999999999999999999999 689999876432111 111111 2467889999999998877664
Q ss_pred -----CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHHHhc----C-CCEEEEecCccccccCCCCcCCC
Q 047227 83 -----GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDACAEL----K-VKRLIYTSSPSVVFDGVHGIING 145 (485)
Q Consensus 83 -----~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~~~~----~-v~r~V~~SS~~vy~~~~~~~~~~ 145 (485)
++|+|||+|+... ..++.+..+++|+.++..+.+++.+. + ..++|++||...+..
T Consensus 74 ~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~-------- 145 (256)
T PRK08643 74 VDTFGDLNVVVNNAGVAPTTPIETITEEQFDKVYNINVGGVIWGIQAAQEAFKKLGHGGKIINATSQAGVVG-------- 145 (256)
T ss_pred HHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCEEEEECccccccC--------
Confidence 4899999998321 12244667899999988777776542 3 358999999765421
Q ss_pred CCCCCCCCCCCchHHHHHHHHHHHHHHHhC---CCCceEEEEecCCcccCCCCCChHHHHHHH--HcCCCeE-----Eec
Q 047227 146 NEALPYPPKHNDFYSATKAEGEALVIKANG---TNGLLTCCIRPSSIFGPGDRLLVPSLVAAA--RAGKSKF-----IIG 215 (485)
Q Consensus 146 ~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~---~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~--~~g~~~~-----~~g 215 (485)
......|+.+|...+.+.+.++. ..|+++++++|+.+..|.... +.... ..+.+.. ...
T Consensus 146 -------~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~Pg~v~t~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 214 (256)
T PRK08643 146 -------NPELAVYSSTKFAVRGLTQTAARDLASEGITVNAYAPGIVKTPMMFD----IAHQVGENAGKPDEWGMEQFAK 214 (256)
T ss_pred -------CCCCchhHHHHHHHHHHHHHHHHHhcccCcEEEEEeeCCCcChhhhH----HHhhhccccCCCchHHHHHHhc
Confidence 12356799999999988887664 468999999999998764211 11000 0000000 000
Q ss_pred CCCceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCC
Q 047227 216 DGNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNM 260 (485)
Q Consensus 216 ~g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~ 260 (485)
. .....+...+|+|.++..++.... ....|+.+.+.++
T Consensus 215 ~-~~~~~~~~~~~va~~~~~L~~~~~------~~~~G~~i~vdgg 252 (256)
T PRK08643 215 D-ITLGRLSEPEDVANCVSFLAGPDS------DYITGQTIIVDGG 252 (256)
T ss_pred c-CCCCCCcCHHHHHHHHHHHhCccc------cCccCcEEEeCCC
Confidence 0 011235678999999888765222 2266778777654
|
|
| >PRK12747 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.3e-16 Score=148.72 Aligned_cols=220 Identities=17% Similarity=0.101 Sum_probs=145.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhh-hcCCCeEEEEecCCCHHHHHHHhc--
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEA-LRSGRAHYVSFDLRHKAQVLQALQ-- 82 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~l~~~~~-- 82 (485)
++|++|||||+|+||+++++.|.+.| ++|.+.++...... .+ ..... .....+..+.+|+.|.+++..+++
T Consensus 3 ~~k~~lItGas~gIG~~ia~~l~~~G-~~v~~~~~~~~~~~---~~--~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 76 (252)
T PRK12747 3 KGKVALVTGASRGIGRAIAKRLANDG-ALVAIHYGNRKEEA---EE--TVYEIQSNGGSAFSIGANLESLHGVEALYSSL 76 (252)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCC-CeEEEEcCCCHHHH---HH--HHHHHHhcCCceEEEecccCCHHHHHHHHHHH
Confidence 35899999999999999999999999 57877643221110 00 01111 113456788899999876554331
Q ss_pred -----------CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHHHhc--CCCEEEEecCccccccCCCCc
Q 047227 83 -----------GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDACAEL--KVKRLIYTSSPSVVFDGVHGI 142 (485)
Q Consensus 83 -----------~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~~~~--~v~r~V~~SS~~vy~~~~~~~ 142 (485)
++|++||+||... ..++++..+++|+.++..+++++... +..++|++||...+.
T Consensus 77 ~~~~~~~~g~~~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~g~iv~isS~~~~~------ 150 (252)
T PRK12747 77 DNELQNRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRDNSRIINISSAATRI------ 150 (252)
T ss_pred HHHhhhhcCCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCeEEEECCccccc------
Confidence 5899999999321 11234667889999999999887653 235899999986642
Q ss_pred CCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCChHH-HHHHHHcCCCeEEecCCC
Q 047227 143 INGNEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLLVPS-LVAAARAGKSKFIIGDGN 218 (485)
Q Consensus 143 ~~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~~~~-~~~~~~~g~~~~~~g~g~ 218 (485)
+......|+.||+..+.+.+.++.+ .|+++.++.||.+.++........ ........ ..
T Consensus 151 ---------~~~~~~~Y~~sKaa~~~~~~~la~e~~~~girvn~v~Pg~v~t~~~~~~~~~~~~~~~~~~--------~~ 213 (252)
T PRK12747 151 ---------SLPDFIAYSMTKGAINTMTFTLAKQLGARGITVNAILPGFIKTDMNAELLSDPMMKQYATT--------IS 213 (252)
T ss_pred ---------CCCCchhHHHHHHHHHHHHHHHHHHHhHcCCEEEEEecCCccCchhhhcccCHHHHHHHHh--------cC
Confidence 1234468999999999999887643 589999999999988743211110 11111110 01
Q ss_pred ceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCC
Q 047227 219 NVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNM 260 (485)
Q Consensus 219 ~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~ 260 (485)
....+.+++|+|.++..++... ..-..|+.+.+.++
T Consensus 214 ~~~~~~~~~dva~~~~~l~s~~------~~~~~G~~i~vdgg 249 (252)
T PRK12747 214 AFNRLGEVEDIADTAAFLASPD------SRWVTGQLIDVSGG 249 (252)
T ss_pred cccCCCCHHHHHHHHHHHcCcc------ccCcCCcEEEecCC
Confidence 1234778999999998875421 11256777777654
|
|
| >PRK06198 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.6e-16 Score=149.94 Aligned_cols=220 Identities=15% Similarity=0.086 Sum_probs=153.7
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHhcCCce-EEEeecCCccccCCccchhhhhhh-hcCCCeEEEEecCCCHHHHHHHh
Q 047227 4 EENERLCVVTGGRGFAARHLVEMLIRYDMFS-VRIADLSDSIALEPHEEQGILGEA-LRSGRAHYVSFDLRHKAQVLQAL 81 (485)
Q Consensus 4 ~~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~-V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~l~~~~ 81 (485)
..++++|+||||+|.||+++++.|.++| ++ |.+++|....... ..... ....++.++.+|++|++++.+++
T Consensus 3 ~~~~k~vlItGa~g~iG~~la~~l~~~G-~~~V~~~~r~~~~~~~------~~~~l~~~~~~~~~~~~D~~~~~~~~~~~ 75 (260)
T PRK06198 3 RLDGKVALVTGGTQGLGAAIARAFAERG-AAGLVICGRNAEKGEA------QAAELEALGAKAVFVQADLSDVEDCRRVV 75 (260)
T ss_pred CCCCcEEEEeCCCchHHHHHHHHHHHCC-CCeEEEEcCCHHHHHH------HHHHHHhcCCeEEEEEccCCCHHHHHHHH
Confidence 3456899999999999999999999999 46 8888886431110 01111 11345778999999999888776
Q ss_pred c-------CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHHHhc----C-CCEEEEecCccccccCCCCc
Q 047227 82 Q-------GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDACAEL----K-VKRLIYTSSPSVVFDGVHGI 142 (485)
Q Consensus 82 ~-------~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~~~~----~-v~r~V~~SS~~vy~~~~~~~ 142 (485)
+ ++|+|||+++... ..++++..+++|+.++.++++++.+. + ..++|++||...++.
T Consensus 76 ~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~ss~~~~~~----- 150 (260)
T PRK06198 76 AAADEAFGRLDALVNAAGLTDRGTILDTSPELFDRHFAVNVRAPFFLMQEAIKLMRRRKAEGTIVNIGSMSAHGG----- 150 (260)
T ss_pred HHHHHHhCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCEEEEECCcccccC-----
Confidence 4 4899999999322 22234567899999999998887542 2 357999999877631
Q ss_pred CCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCC-------ChHHHHHHHHcCCCeE
Q 047227 143 INGNEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRL-------LVPSLVAAARAGKSKF 212 (485)
Q Consensus 143 ~~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~-------~~~~~~~~~~~g~~~~ 212 (485)
......|+.+|...|.+.+.++.+ .+++++.++|+.++++.... ....+........
T Consensus 151 ----------~~~~~~Y~~sK~a~~~~~~~~a~e~~~~~i~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~--- 217 (260)
T PRK06198 151 ----------QPFLAAYCASKGALATLTRNAAYALLRNRIRVNGLNIGWMATEGEDRIQREFHGAPDDWLEKAAATQ--- 217 (260)
T ss_pred ----------CCCcchhHHHHHHHHHHHHHHHHHhcccCeEEEEEeeccccCcchhhhhhhccCCChHHHHHHhccC---
Confidence 123467999999999998876643 46999999999999875321 1112222222111
Q ss_pred EecCCCceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCC
Q 047227 213 IIGDGNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNM 260 (485)
Q Consensus 213 ~~g~g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~ 260 (485)
....+++++|+|+++..++..... ...|+.+++.++
T Consensus 218 ------~~~~~~~~~~~a~~~~~l~~~~~~------~~~G~~~~~~~~ 253 (260)
T PRK06198 218 ------PFGRLLDPDEVARAVAFLLSDESG------LMTGSVIDFDQS 253 (260)
T ss_pred ------CccCCcCHHHHHHHHHHHcChhhC------CccCceEeECCc
Confidence 234578899999999988653222 257888888765
|
|
| >PRK08267 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.9e-16 Score=149.75 Aligned_cols=198 Identities=21% Similarity=0.150 Sum_probs=138.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc----
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ---- 82 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~---- 82 (485)
||++|||||+|+||+++++.|+++| ++|.+++|...... + +.......++.++.+|+.|.+++.++++
T Consensus 1 mk~vlItGasg~iG~~la~~l~~~G-~~V~~~~r~~~~~~----~---~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~ 72 (260)
T PRK08267 1 MKSIFITGAASGIGRATALLFAAEG-WRVGAYDINEAGLA----A---LAAELGAGNAWTGALDVTDRAAWDAALADFAA 72 (260)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHCC-CeEEEEeCCHHHHH----H---HHHHhcCCceEEEEecCCCHHHHHHHHHHHHH
Confidence 3689999999999999999999999 68999987643110 0 1111223578999999999998887764
Q ss_pred ----CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHHHh----cCCCEEEEecCccccccCCCCcCCCCC
Q 047227 83 ----GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDACAE----LKVKRLIYTSSPSVVFDGVHGIINGNE 147 (485)
Q Consensus 83 ----~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~~~----~~v~r~V~~SS~~vy~~~~~~~~~~~e 147 (485)
++|+|||+|+... +.++.+..+++|+.++.++.+++.+ .+..++|++||...+..
T Consensus 73 ~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~---------- 142 (260)
T PRK08267 73 ATGGRLDVLFNNAGILRGGPFEDIPLEAHDRVIDINVKGVLNGAHAALPYLKATPGARVINTSSASAIYG---------- 142 (260)
T ss_pred HcCCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCEEEEeCchhhCcC----------
Confidence 3699999999322 2234677899999999999888753 44578999999654321
Q ss_pred CCCCCCCCCchHHHHHHHHHHHHHHHhC---CCCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCceeecc
Q 047227 148 ALPYPPKHNDFYSATKAEGEALVIKANG---TNGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFT 224 (485)
Q Consensus 148 ~~~~~~~~~~~Y~~sK~~~E~~~~~~~~---~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i 224 (485)
......|+.+|...+.+.+.++. ..++++.+++|+.+-.+............... .....+
T Consensus 143 -----~~~~~~Y~~sKaa~~~~~~~l~~~~~~~~i~v~~i~pg~~~t~~~~~~~~~~~~~~~~-----------~~~~~~ 206 (260)
T PRK08267 143 -----QPGLAVYSATKFAVRGLTEALDLEWRRHGIRVADVMPLFVDTAMLDGTSNEVDAGSTK-----------RLGVRL 206 (260)
T ss_pred -----CCCchhhHHHHHHHHHHHHHHHHHhcccCcEEEEEecCCcCCcccccccchhhhhhHh-----------hccCCC
Confidence 12356899999999999888763 35799999999998755322100000000000 011135
Q ss_pred cHHHHHHHHHHHHH
Q 047227 225 YVANVAHAHICAER 238 (485)
Q Consensus 225 ~v~D~a~a~~~~~~ 238 (485)
..+|+|++++.+++
T Consensus 207 ~~~~va~~~~~~~~ 220 (260)
T PRK08267 207 TPEDVAEAVWAAVQ 220 (260)
T ss_pred CHHHHHHHHHHHHh
Confidence 57999999998875
|
|
| >PRK12742 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.5e-15 Score=143.57 Aligned_cols=219 Identities=14% Similarity=0.100 Sum_probs=147.4
Q ss_pred CCCCCCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHH
Q 047227 1 MSGEENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQA 80 (485)
Q Consensus 1 M~~~~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~ 80 (485)
|+ ..++++||||||+|.||+++++.|.++| ++|.++.+..... ........++..+.+|++|.+++.++
T Consensus 1 m~-~~~~k~vlItGasggIG~~~a~~l~~~G-~~v~~~~~~~~~~---------~~~l~~~~~~~~~~~D~~~~~~~~~~ 69 (237)
T PRK12742 1 MG-AFTGKKVLVLGGSRGIGAAIVRRFVTDG-ANVRFTYAGSKDA---------AERLAQETGATAVQTDSADRDAVIDV 69 (237)
T ss_pred CC-CCCCCEEEEECCCChHHHHHHHHHHHCC-CEEEEecCCCHHH---------HHHHHHHhCCeEEecCCCCHHHHHHH
Confidence 54 3457899999999999999999999999 5787765532210 11111112467888999999888777
Q ss_pred hc---CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHHHhc--CCCEEEEecCccccccCCCCcCCCCCC
Q 047227 81 LQ---GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDACAEL--KVKRLIYTSSPSVVFDGVHGIINGNEA 148 (485)
Q Consensus 81 ~~---~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~~~~--~v~r~V~~SS~~vy~~~~~~~~~~~e~ 148 (485)
++ ++|++||+|+... +.++++..+++|+.++.+++..+... +..++|++||.....
T Consensus 70 ~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~~~~------------ 137 (237)
T PRK12742 70 VRKSGALDILVVNAGIAVFGDALELDADDIDRLFKINIHAPYHASVEAARQMPEGGRIIIIGSVNGDR------------ 137 (237)
T ss_pred HHHhCCCcEEEECCCCCCCCCcccCCHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCeEEEEecccccc------------
Confidence 65 3899999998321 22356778999999999997665543 246899999854310
Q ss_pred CCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCceeeccc
Q 047227 149 LPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFTY 225 (485)
Q Consensus 149 ~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~ 225 (485)
. +..+...|+.+|...|.+++.++.+ .|+++++++||.+..+......+ ......... ....+..
T Consensus 138 ~--~~~~~~~Y~~sKaa~~~~~~~la~~~~~~gi~v~~v~Pg~~~t~~~~~~~~-~~~~~~~~~---------~~~~~~~ 205 (237)
T PRK12742 138 M--PVAGMAAYAASKSALQGMARGLARDFGPRGITINVVQPGPIDTDANPANGP-MKDMMHSFM---------AIKRHGR 205 (237)
T ss_pred C--CCCCCcchHHhHHHHHHHHHHHHHHHhhhCeEEEEEecCcccCCccccccH-HHHHHHhcC---------CCCCCCC
Confidence 0 2245678999999999999877643 57999999999997664222111 111111111 1123567
Q ss_pred HHHHHHHHHHHHHHhccccchhhccCCcEEEeeCC
Q 047227 226 VANVAHAHICAERALASEVTVAEKAAGQAYFVTNM 260 (485)
Q Consensus 226 v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~ 260 (485)
.+|+++++..++..... ...|..+.+.++
T Consensus 206 p~~~a~~~~~l~s~~~~------~~~G~~~~~dgg 234 (237)
T PRK12742 206 PEEVAGMVAWLAGPEAS------FVTGAMHTIDGA 234 (237)
T ss_pred HHHHHHHHHHHcCcccC------cccCCEEEeCCC
Confidence 89999999887653221 256777777554
|
|
| >PRK06101 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.9e-16 Score=146.72 Aligned_cols=187 Identities=16% Similarity=0.140 Sum_probs=137.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcC----
Q 047227 8 RLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQG---- 83 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~---- 83 (485)
++++||||+|+||+++++.|+++| ++|.+++|+.... ++ +.. ...++.++.+|++|.+++.+++++
T Consensus 2 ~~vlItGas~giG~~la~~L~~~G-~~V~~~~r~~~~~----~~---~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 71 (240)
T PRK06101 2 TAVLITGATSGIGKQLALDYAKQG-WQVIACGRNQSVL----DE---LHT--QSANIFTLAFDVTDHPGTKAALSQLPFI 71 (240)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhCC-CEEEEEECCHHHH----HH---HHH--hcCCCeEEEeeCCCHHHHHHHHHhcccC
Confidence 689999999999999999999999 6899998864311 00 111 124688999999999999988864
Q ss_pred CCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHHHhc--CCCEEEEecCccccccCCCCcCCCCCCCCCCCC
Q 047227 84 AEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDACAEL--KVKRLIYTSSPSVVFDGVHGIINGNEALPYPPK 154 (485)
Q Consensus 84 ~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~~~~--~v~r~V~~SS~~vy~~~~~~~~~~~e~~~~~~~ 154 (485)
.|.++|+|+... ..++.+..+++|+.++.++++++... +.+++|++||..... +..
T Consensus 72 ~d~~i~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~isS~~~~~---------------~~~ 136 (240)
T PRK06101 72 PELWIFNAGDCEYMDDGKVDATLMARVFNVNVLGVANCIEGIQPHLSCGHRVVIVGSIASEL---------------ALP 136 (240)
T ss_pred CCEEEEcCcccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCeEEEEechhhcc---------------CCC
Confidence 689999998321 12234568999999999999998863 235799998854321 122
Q ss_pred CCchHHHHHHHHHHHHHHHh---CCCCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCceeecccHHHHHH
Q 047227 155 HNDFYSATKAEGEALVIKAN---GTNGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAH 231 (485)
Q Consensus 155 ~~~~Y~~sK~~~E~~~~~~~---~~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~D~a~ 231 (485)
....|+.+|...|.+.+.++ +..|++++++||+.++++..... .. + ....+..+|+|+
T Consensus 137 ~~~~Y~asK~a~~~~~~~l~~e~~~~gi~v~~v~pg~i~t~~~~~~------------~~----~---~~~~~~~~~~a~ 197 (240)
T PRK06101 137 RAEAYGASKAAVAYFARTLQLDLRPKGIEVVTVFPGFVATPLTDKN------------TF----A---MPMIITVEQASQ 197 (240)
T ss_pred CCchhhHHHHHHHHHHHHHHHHHHhcCceEEEEeCCcCCCCCcCCC------------CC----C---CCcccCHHHHHH
Confidence 45589999999999988765 34689999999999998742210 00 0 012467999999
Q ss_pred HHHHHHH
Q 047227 232 AHICAER 238 (485)
Q Consensus 232 a~~~~~~ 238 (485)
.++..++
T Consensus 198 ~i~~~i~ 204 (240)
T PRK06101 198 EIRAQLA 204 (240)
T ss_pred HHHHHHh
Confidence 9998876
|
|
| >PRK07041 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=6.4e-16 Score=145.36 Aligned_cols=214 Identities=17% Similarity=0.074 Sum_probs=151.7
Q ss_pred EEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcC---CCEE
Q 047227 11 VVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQG---AEVV 87 (485)
Q Consensus 11 LVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~---~d~V 87 (485)
|||||+|+||+++++.|+++| ++|++++|....... .........+++++.+|++|++++.++++. +|.+
T Consensus 1 lItGas~~iG~~~a~~l~~~G-~~v~~~~r~~~~~~~------~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~id~l 73 (230)
T PRK07041 1 LVVGGSSGIGLALARAFAAEG-ARVTIASRSRDRLAA------AARALGGGAPVRTAALDITDEAAVDAFFAEAGPFDHV 73 (230)
T ss_pred CeecCCChHHHHHHHHHHHCC-CEEEEEeCCHHHHHH------HHHHHhcCCceEEEEccCCCHHHHHHHHHhcCCCCEE
Confidence 699999999999999999999 689999886431110 011111135688999999999999998864 7999
Q ss_pred EEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCccccccCCCCcCCCCCCCCCCCCCCchHH
Q 047227 88 FHMAAPNS-------SINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDFYS 160 (485)
Q Consensus 88 ih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy~~~~~~~~~~~e~~~~~~~~~~~Y~ 160 (485)
||+++... ..++....+++|+.++.++.++....+.+++|++||...+. +..+.+.|+
T Consensus 74 i~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~g~iv~~ss~~~~~---------------~~~~~~~Y~ 138 (230)
T PRK07041 74 VITAADTPGGPVRALPLAAAQAAMDSKFWGAYRVARAARIAPGGSLTFVSGFAAVR---------------PSASGVLQG 138 (230)
T ss_pred EECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHhhhhhcCCeEEEEECchhhcC---------------CCCcchHHH
Confidence 99998321 22456778999999999999977665678999999987763 123557899
Q ss_pred HHHHHHHHHHHHHhCCC-CceEEEEecCCcccCCCCC----ChHHHHHHHHcCCCeEEecCCCceeecccHHHHHHHHHH
Q 047227 161 ATKAEGEALVIKANGTN-GLLTCCIRPSSIFGPGDRL----LVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHIC 235 (485)
Q Consensus 161 ~sK~~~E~~~~~~~~~~-g~~~~ilRp~~v~Gp~~~~----~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~D~a~a~~~ 235 (485)
.+|...|.+.+.++.+. ++++++++|+.+-.+.... ....+........+ ...+..++|+|+++..
T Consensus 139 ~sK~a~~~~~~~la~e~~~irv~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~dva~~~~~ 209 (230)
T PRK07041 139 AINAALEALARGLALELAPVRVNTVSPGLVDTPLWSKLAGDAREAMFAAAAERLP---------ARRVGQPEDVANAILF 209 (230)
T ss_pred HHHHHHHHHHHHHHHHhhCceEEEEeecccccHHHHhhhccchHHHHHHHHhcCC---------CCCCcCHHHHHHHHHH
Confidence 99999999998877543 5889999999876542111 00112222222111 1124568999999998
Q ss_pred HHHHhccccchhhccCCcEEEeeCCCCc
Q 047227 236 AERALASEVTVAEKAAGQAYFVTNMESI 263 (485)
Q Consensus 236 ~~~~~~~~~~~~~~~~g~~ynv~~~~~~ 263 (485)
++.. ....|+.|++.+++++
T Consensus 210 l~~~--------~~~~G~~~~v~gg~~~ 229 (230)
T PRK07041 210 LAAN--------GFTTGSTVLVDGGHAI 229 (230)
T ss_pred HhcC--------CCcCCcEEEeCCCeec
Confidence 8752 2256889999887653
|
|
| >PRK07454 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.1e-15 Score=144.81 Aligned_cols=199 Identities=14% Similarity=0.097 Sum_probs=142.3
Q ss_pred CCCCCCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhh--cCCCeEEEEecCCCHHHHH
Q 047227 1 MSGEENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEAL--RSGRAHYVSFDLRHKAQVL 78 (485)
Q Consensus 1 M~~~~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~Dl~d~~~l~ 78 (485)
|+. .+++++|||||+|.+|.++++.|+++| ++|++++|....... +.... ...++.++.+|++|.+++.
T Consensus 1 ~~~-~~~k~vlItG~sg~iG~~la~~l~~~G-~~V~~~~r~~~~~~~-------~~~~~~~~~~~~~~~~~D~~~~~~~~ 71 (241)
T PRK07454 1 MSL-NSMPRALITGASSGIGKATALAFAKAG-WDLALVARSQDALEA-------LAAELRSTGVKAAAYSIDLSNPEAIA 71 (241)
T ss_pred CCC-CCCCEEEEeCCCchHHHHHHHHHHHCC-CEEEEEeCCHHHHHH-------HHHHHHhCCCcEEEEEccCCCHHHHH
Confidence 543 346799999999999999999999999 599999886532111 11111 1246889999999999887
Q ss_pred HHhc-------CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHH----HhcCCCEEEEecCccccccCCC
Q 047227 79 QALQ-------GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDAC----AELKVKRLIYTSSPSVVFDGVH 140 (485)
Q Consensus 79 ~~~~-------~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~----~~~~v~r~V~~SS~~vy~~~~~ 140 (485)
++++ ++|+|||+++... ..++.+..+++|+.++.++++++ ++.+.+++|++||...+.+
T Consensus 72 ~~~~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~--- 148 (241)
T PRK07454 72 PGIAELLEQFGCPDVLINNAGMAYTGPLLEMPLSDWQWVIQLNLTSVFQCCSAVLPGMRARGGGLIINVSSIAARNA--- 148 (241)
T ss_pred HHHHHHHHHcCCCCEEEECCCccCCCchhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCcEEEEEccHHhCcC---
Confidence 7765 3899999999321 22355677899999988877775 3445678999999877631
Q ss_pred CcCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhC---CCCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCC
Q 047227 141 GIINGNEALPYPPKHNDFYSATKAEGEALVIKANG---TNGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDG 217 (485)
Q Consensus 141 ~~~~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~---~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g 217 (485)
..+...|+.+|...+.+.+.++. ..+++++++||+.+-.+.... .......
T Consensus 149 ------------~~~~~~Y~~sK~~~~~~~~~~a~e~~~~gi~v~~i~pg~i~t~~~~~-----------~~~~~~~--- 202 (241)
T PRK07454 149 ------------FPQWGAYCVSKAALAAFTKCLAEEERSHGIRVCTITLGAVNTPLWDT-----------ETVQADF--- 202 (241)
T ss_pred ------------CCCccHHHHHHHHHHHHHHHHHHHhhhhCCEEEEEecCcccCCcccc-----------ccccccc---
Confidence 23456899999999999877653 358999999999987663211 0000000
Q ss_pred CceeecccHHHHHHHHHHHHH
Q 047227 218 NNVYDFTYVANVAHAHICAER 238 (485)
Q Consensus 218 ~~~~~~i~v~D~a~a~~~~~~ 238 (485)
.....+..+|+|++++.++.
T Consensus 203 -~~~~~~~~~~va~~~~~l~~ 222 (241)
T PRK07454 203 -DRSAMLSPEQVAQTILHLAQ 222 (241)
T ss_pred -ccccCCCHHHHHHHHHHHHc
Confidence 01235789999999999876
|
|
| >PRK06197 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.7e-16 Score=154.64 Aligned_cols=183 Identities=15% Similarity=0.083 Sum_probs=125.9
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc--
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ-- 82 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 82 (485)
.++++||||||+|+||+++++.|.++| ++|++++|..........+ +.......++.++.+|+.|.+++.++++
T Consensus 14 ~~~k~vlItGas~gIG~~~a~~l~~~G-~~vi~~~r~~~~~~~~~~~---l~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~ 89 (306)
T PRK06197 14 QSGRVAVVTGANTGLGYETAAALAAKG-AHVVLAVRNLDKGKAAAAR---ITAATPGADVTLQELDLTSLASVRAAADAL 89 (306)
T ss_pred CCCCEEEEcCCCCcHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHH---HHHhCCCCceEEEECCCCCHHHHHHHHHHH
Confidence 356899999999999999999999999 5888888864321110000 1111113468899999999998877664
Q ss_pred -----CCCEEEEcCCCCC-----CCCchhhhHHHHHHH----HHHHHHHHHhcCCCEEEEecCccccccCCCCcCCCCCC
Q 047227 83 -----GAEVVFHMAAPNS-----SINNHKLHHSVNVEG----TKNVIDACAELKVKRLIYTSSPSVVFDGVHGIINGNEA 148 (485)
Q Consensus 83 -----~~d~Vih~aa~~~-----~~~~~~~~~~~nv~~----t~~ll~a~~~~~v~r~V~~SS~~vy~~~~~~~~~~~e~ 148 (485)
+.|+|||+||... ..++.+..+++|+.+ +..+++.+++.+.+++|++||...+..+..... +..
T Consensus 90 ~~~~~~iD~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~~~~~iV~vSS~~~~~~~~~~~~--~~~ 167 (306)
T PRK06197 90 RAAYPRIDLLINNAGVMYTPKQTTADGFELQFGTNHLGHFALTGLLLDRLLPVPGSRVVTVSSGGHRIRAAIHFD--DLQ 167 (306)
T ss_pred HhhCCCCCEEEECCccccCCCccCCCCcchhhhhhhHHHHHHHHHHHHHHhhCCCCEEEEECCHHHhccCCCCcc--ccC
Confidence 4899999999321 234556788999999 667777777776679999999875432211111 111
Q ss_pred CCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceE--EEEecCCcccCC
Q 047227 149 LPYPPKHNDFYSATKAEGEALVIKANGT---NGLLT--CCIRPSSIFGPG 193 (485)
Q Consensus 149 ~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~--~ilRp~~v~Gp~ 193 (485)
...+..+...|+.||...+.+.+.++.+ .++++ +.+.||.+..+.
T Consensus 168 ~~~~~~~~~~Y~~SK~a~~~~~~~la~~l~~~~i~v~~v~~~PG~v~T~~ 217 (306)
T PRK06197 168 WERRYNRVAAYGQSKLANLLFTYELQRRLAAAGATTIAVAAHPGVSNTEL 217 (306)
T ss_pred cccCCCcHHHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEeCCCcccCcc
Confidence 1112346678999999999998887654 35544 445799887653
|
|
| >PRK07825 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.2e-16 Score=150.02 Aligned_cols=190 Identities=18% Similarity=0.119 Sum_probs=135.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc---
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ--- 82 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 82 (485)
+++++|||||+|.||+++++.|.++| +.|.+.+|....... ....+ .++.++.+|+.|++++.++++
T Consensus 4 ~~~~ilVtGasggiG~~la~~l~~~G-~~v~~~~r~~~~~~~-------~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~ 73 (273)
T PRK07825 4 RGKVVAITGGARGIGLATARALAALG-ARVAIGDLDEALAKE-------TAAEL--GLVVGGPLDVTDPASFAAFLDAVE 73 (273)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCC-CEEEEEECCHHHHHH-------HHHHh--ccceEEEccCCCHHHHHHHHHHHH
Confidence 46899999999999999999999999 689888876431100 11111 257889999999998766653
Q ss_pred ----CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHH----HhcCCCEEEEecCccccccCCCCcCCCCC
Q 047227 83 ----GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDAC----AELKVKRLIYTSSPSVVFDGVHGIINGNE 147 (485)
Q Consensus 83 ----~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~----~~~~v~r~V~~SS~~vy~~~~~~~~~~~e 147 (485)
+.|++||+||... ..++....+++|+.++.++.+++ ++.+.+++|++||...+.
T Consensus 74 ~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~----------- 142 (273)
T PRK07825 74 ADLGPIDVLVNNAGVMPVGPFLDEPDAVTRRILDVNVYGVILGSKLAAPRMVPRGRGHVVNVASLAGKI----------- 142 (273)
T ss_pred HHcCCCCEEEECCCcCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEcCccccC-----------
Confidence 4799999999321 22245667899999888876665 456677999999976542
Q ss_pred CCCCCCCCCchHHHHHHHHHHHHHHHhC---CCCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCceeecc
Q 047227 148 ALPYPPKHNDFYSATKAEGEALVIKANG---TNGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFT 224 (485)
Q Consensus 148 ~~~~~~~~~~~Y~~sK~~~E~~~~~~~~---~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i 224 (485)
+......|+.+|...+.+.+.+.. ..|+++++++|+.+-.+... +. .+.....++
T Consensus 143 ----~~~~~~~Y~asKaa~~~~~~~l~~el~~~gi~v~~v~Pg~v~t~~~~------------~~------~~~~~~~~~ 200 (273)
T PRK07825 143 ----PVPGMATYCASKHAVVGFTDAARLELRGTGVHVSVVLPSFVNTELIA------------GT------GGAKGFKNV 200 (273)
T ss_pred ----CCCCCcchHHHHHHHHHHHHHHHHHhhccCcEEEEEeCCcCcchhhc------------cc------ccccCCCCC
Confidence 123456899999988877665543 35899999999987544211 10 011123578
Q ss_pred cHHHHHHHHHHHHH
Q 047227 225 YVANVAHAHICAER 238 (485)
Q Consensus 225 ~v~D~a~a~~~~~~ 238 (485)
.++|+|++++.++.
T Consensus 201 ~~~~va~~~~~~l~ 214 (273)
T PRK07825 201 EPEDVAAAIVGTVA 214 (273)
T ss_pred CHHHHHHHHHHHHh
Confidence 89999999998876
|
|
| >TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase | Back alignment and domain information |
|---|
Probab=99.70 E-value=9.8e-16 Score=145.13 Aligned_cols=218 Identities=17% Similarity=0.077 Sum_probs=147.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhh-hcCCCeEEEEecCCCHHHHHHHhc----
Q 047227 8 RLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEA-LRSGRAHYVSFDLRHKAQVLQALQ---- 82 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~l~~~~~---- 82 (485)
|++|||||+|+||+++++.|+++| ++|.++.|..... ...+.... ....++.++.+|+.|++++.++++
T Consensus 1 k~~lItG~sg~iG~~la~~l~~~G-~~v~~~~r~~~~~-----~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 74 (242)
T TIGR01829 1 RIALVTGGMGGIGTAICQRLAKDG-YRVAANCGPNEER-----AEAWLQEQGALGFDFRVVEGDVSSFESCKAAVAKVEA 74 (242)
T ss_pred CEEEEECCCChHHHHHHHHHHHCC-CEEEEEeCCCHHH-----HHHHHHHHHhhCCceEEEEecCCCHHHHHHHHHHHHH
Confidence 579999999999999999999999 5888877632110 00011111 113468899999999988777664
Q ss_pred ---CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHH----HHHHhcCCCEEEEecCccccccCCCCcCCCCCC
Q 047227 83 ---GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVI----DACAELKVKRLIYTSSPSVVFDGVHGIINGNEA 148 (485)
Q Consensus 83 ---~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll----~a~~~~~v~r~V~~SS~~vy~~~~~~~~~~~e~ 148 (485)
.+|+|||+++... ..+++...+++|+.++..+. ..+++.+.+++|++||.....
T Consensus 75 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~iss~~~~~------------ 142 (242)
T TIGR01829 75 ELGPIDVLVNNAGITRDATFKKMTYEQWSAVIDTNLNSVFNVTQPVIDGMRERGWGRIINISSVNGQK------------ 142 (242)
T ss_pred HcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhcC------------
Confidence 4899999998321 22345667889999977754 445566778999999864331
Q ss_pred CCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCceeeccc
Q 047227 149 LPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFTY 225 (485)
Q Consensus 149 ~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~ 225 (485)
+......|+.+|...+.+++.++.+ .+++++.++|+.+.++......+.+........+. ..+..
T Consensus 143 ---~~~~~~~y~~sk~a~~~~~~~la~~~~~~~i~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~---------~~~~~ 210 (242)
T TIGR01829 143 ---GQFGQTNYSAAKAGMIGFTKALAQEGATKGVTVNTISPGYIATDMVMAMREDVLNSIVAQIPV---------GRLGR 210 (242)
T ss_pred ---CCCCcchhHHHHHHHHHHHHHHHHHhhhhCeEEEEEeeCCCcCccccccchHHHHHHHhcCCC---------CCCcC
Confidence 1123467999999888888776543 58999999999998875443334444333333221 12445
Q ss_pred HHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCC
Q 047227 226 VANVAHAHICAERALASEVTVAEKAAGQAYFVTNME 261 (485)
Q Consensus 226 v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~ 261 (485)
.+|+++++..+.... .....|+.+.+.++.
T Consensus 211 ~~~~a~~~~~l~~~~------~~~~~G~~~~~~gg~ 240 (242)
T TIGR01829 211 PEEIAAAVAFLASEE------AGYITGATLSINGGL 240 (242)
T ss_pred HHHHHHHHHHHcCch------hcCccCCEEEecCCc
Confidence 689999887664321 112568888887763
|
(R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families. |
| >KOG1792 consensus Reticulon [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.9e-17 Score=149.11 Aligned_cols=115 Identities=28% Similarity=0.423 Sum_probs=106.9
Q ss_pred CCCccceeccCcccccccccccchhhHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHhhcccccccCCCCC--
Q 047227 369 GPSKASVLLGSGRVADTLLWKDKKWTLTAVLILVAIYYIFIVPGYTIITAFSKLLLLMLIFLVIHSFLPEKIFGYTLE-- 446 (485)
Q Consensus 369 ~~~~~~~~~~~g~la~~l~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 446 (485)
++..+++.+++|+++|.+.|||++.+.+++.+++++|++||..+|+++|+.|+++++++.++|.|++.-..++.++.|
T Consensus 30 ~~~~v~~~lg~~~vaDlllWrdkk~s~~vl~~~~~~w~lf~~~~~~~vt~~~~i~ll~~~i~F~w~~~~~~~~k~~~~~~ 109 (230)
T KOG1792|consen 30 REGPVHKVLGGGKVADLLLWRDKKKSGTVLGVATALWLLFEFFSYNSVTLLCHILLLALAILFLWSKAVTFLNKKSEPGA 109 (230)
T ss_pred CCccccccCCCCchhheeeeeccccceeehHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccc
Confidence 455688888999999999999999999999999999999999999999999999999999999999994555555888
Q ss_pred CCC-CCceeechhHHHHHHHHHHHHHHhHHHHHHHhccCC
Q 047227 447 KIP-ASSFHLSDEKSLRLAHSVASSWNTSITVLKSLSKGN 485 (485)
Q Consensus 447 ~~~-~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~g~ 485 (485)
.+| + ++||||.+++.|.+++.+.|++++.+++|+.|+
T Consensus 110 ~lp~~--i~ipee~~~~~a~~~~~~in~~l~~l~~ia~~~ 147 (230)
T KOG1792|consen 110 YLPVE--ITIPEEFVLALASSLRVEINQALSELRDIALGR 147 (230)
T ss_pred cCCce--eecCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 899 7 999999999999999999999999999999885
|
|
| >PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.2e-15 Score=144.31 Aligned_cols=217 Identities=12% Similarity=0.105 Sum_probs=150.6
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhh--cCCCeEEEEecCCCHHHHHHHhc
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEAL--RSGRAHYVSFDLRHKAQVLQALQ 82 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~Dl~d~~~l~~~~~ 82 (485)
.+++++|||||+|.||.++++.|.++| +.|.+++|... . +. ..... ...++.++.+|+.|.+++.++++
T Consensus 13 l~~k~vlItGas~gIG~~ia~~l~~~G-~~v~~~~~~~~-~----~~---~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~ 83 (258)
T PRK06935 13 LDGKVAIVTGGNTGLGQGYAVALAKAG-ADIIITTHGTN-W----DE---TRRLIEKEGRKVTFVQVDLTKPESAEKVVK 83 (258)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCC-CEEEEEeCCcH-H----HH---HHHHHHhcCCceEEEEcCCCCHHHHHHHHH
Confidence 457899999999999999999999999 58888887622 1 00 11111 13468899999999998887775
Q ss_pred -------CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHHH----hcCCCEEEEecCccccccCCCCcCC
Q 047227 83 -------GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDACA----ELKVKRLIYTSSPSVVFDGVHGIIN 144 (485)
Q Consensus 83 -------~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~~----~~~v~r~V~~SS~~vy~~~~~~~~~ 144 (485)
+.|++||+++... ...+++..+++|+.++.++.+++. +.+.+++|++||...+.+
T Consensus 84 ~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~------- 156 (258)
T PRK06935 84 EALEEFGKIDILVNNAGTIRRAPLLEYKDEDWNAVMDINLNSVYHLSQAVAKVMAKQGSGKIINIASMLSFQG------- 156 (258)
T ss_pred HHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhCHHHHHHHHHHHHHHHhcCCeEEEEECCHHhccC-------
Confidence 4799999999321 223556788999999877776654 445679999999876531
Q ss_pred CCCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCCh--HHHHHHHHcCCCeEEecCCCc
Q 047227 145 GNEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLLV--PSLVAAARAGKSKFIIGDGNN 219 (485)
Q Consensus 145 ~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~~--~~~~~~~~~g~~~~~~g~g~~ 219 (485)
......|+.+|...|.+++.++++ .|+++++++||.+..+...... ........... .
T Consensus 157 --------~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~---------~ 219 (258)
T PRK06935 157 --------GKFVPAYTASKHGVAGLTKAFANELAAYNIQVNAIAPGYIKTANTAPIRADKNRNDEILKRI---------P 219 (258)
T ss_pred --------CCCchhhHHHHHHHHHHHHHHHHHhhhhCeEEEEEEeccccccchhhcccChHHHHHHHhcC---------C
Confidence 123458999999999999888764 5799999999998776422110 11111111111 1
Q ss_pred eeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCC
Q 047227 220 VYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNM 260 (485)
Q Consensus 220 ~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~ 260 (485)
...+...+|+|..+..++.... ....|+++.+.++
T Consensus 220 ~~~~~~~~dva~~~~~l~s~~~------~~~~G~~i~~dgg 254 (258)
T PRK06935 220 AGRWGEPDDLMGAAVFLASRAS------DYVNGHILAVDGG 254 (258)
T ss_pred CCCCCCHHHHHHHHHHHcChhh------cCCCCCEEEECCC
Confidence 1346778999999987754221 2256778877665
|
|
| >PRK06196 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.3e-16 Score=153.18 Aligned_cols=213 Identities=16% Similarity=0.126 Sum_probs=140.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc---
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ--- 82 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 82 (485)
++++||||||+|+||.++++.|+++| ++|++++|....... ....+ .++.++.+|++|.+++.++++
T Consensus 25 ~~k~vlITGasggIG~~~a~~L~~~G-~~Vv~~~R~~~~~~~-------~~~~l--~~v~~~~~Dl~d~~~v~~~~~~~~ 94 (315)
T PRK06196 25 SGKTAIVTGGYSGLGLETTRALAQAG-AHVIVPARRPDVARE-------ALAGI--DGVEVVMLDLADLESVRAFAERFL 94 (315)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCC-CEEEEEeCCHHHHHH-------HHHHh--hhCeEEEccCCCHHHHHHHHHHHH
Confidence 56899999999999999999999999 589998886431100 11111 247889999999998877663
Q ss_pred ----CCCEEEEcCCCCC-----CCCchhhhHHHHHHHHHHHHH----HHHhcCCCEEEEecCccccccCCCCcCCCCCCC
Q 047227 83 ----GAEVVFHMAAPNS-----SINNHKLHHSVNVEGTKNVID----ACAELKVKRLIYTSSPSVVFDGVHGIINGNEAL 149 (485)
Q Consensus 83 ----~~d~Vih~aa~~~-----~~~~~~~~~~~nv~~t~~ll~----a~~~~~v~r~V~~SS~~vy~~~~~~~~~~~e~~ 149 (485)
++|+|||+||... ..+..+..+++|+.++..+.+ ++++.+..|+|++||......... ..+...
T Consensus 95 ~~~~~iD~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~~~~~iV~vSS~~~~~~~~~---~~~~~~ 171 (315)
T PRK06196 95 DSGRRIDILINNAGVMACPETRVGDGWEAQFATNHLGHFALVNLLWPALAAGAGARVVALSSAGHRRSPIR---WDDPHF 171 (315)
T ss_pred hcCCCCCEEEECCCCCCCCCccCCccHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEECCHHhccCCCC---ccccCc
Confidence 4899999999321 223457788999999655555 455555579999999754321110 001000
Q ss_pred CCCCCCCchHHHHHHHHHHHHHHHhC---CCCceEEEEecCCcccCCCCCChHH-HH--HHHHcCCCeEEecCCCceeec
Q 047227 150 PYPPKHNDFYSATKAEGEALVIKANG---TNGLLTCCIRPSSIFGPGDRLLVPS-LV--AAARAGKSKFIIGDGNNVYDF 223 (485)
Q Consensus 150 ~~~~~~~~~Y~~sK~~~E~~~~~~~~---~~g~~~~ilRp~~v~Gp~~~~~~~~-~~--~~~~~g~~~~~~g~g~~~~~~ 223 (485)
..+..+...|+.||...+.+.+.++. ..|++++++|||.+.++.....-.. .. ..+..... .+ ...+
T Consensus 172 ~~~~~~~~~Y~~SK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~-~~------~~~~ 244 (315)
T PRK06196 172 TRGYDKWLAYGQSKTANALFAVHLDKLGKDQGVRAFSVHPGGILTPLQRHLPREEQVALGWVDEHGN-PI------DPGF 244 (315)
T ss_pred cCCCChHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeeCCcccCCccccCChhhhhhhhhhhhhhh-hh------hhhc
Confidence 11234557899999999998877653 3589999999999998854321110 00 00000000 00 0024
Q ss_pred ccHHHHHHHHHHHHH
Q 047227 224 TYVANVAHAHICAER 238 (485)
Q Consensus 224 i~v~D~a~a~~~~~~ 238 (485)
..++|.|..++.++.
T Consensus 245 ~~~~~~a~~~~~l~~ 259 (315)
T PRK06196 245 KTPAQGAATQVWAAT 259 (315)
T ss_pred CCHhHHHHHHHHHhc
Confidence 568999999998864
|
|
| >PRK07035 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.2e-15 Score=145.71 Aligned_cols=219 Identities=15% Similarity=0.127 Sum_probs=149.4
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhh-cCCCeEEEEecCCCHHHHHHHhc-
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEAL-RSGRAHYVSFDLRHKAQVLQALQ- 82 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~- 82 (485)
.+++++|||||+|+||.++++.|.++| ++|.+++|....... ...... ...++.++.+|+.|.+++.++++
T Consensus 6 l~~k~vlItGas~gIG~~l~~~l~~~G-~~Vi~~~r~~~~~~~------~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 78 (252)
T PRK07035 6 LTGKIALVTGASRGIGEAIAKLLAQQG-AHVIVSSRKLDGCQA------VADAIVAAGGKAEALACHIGEMEQIDALFAH 78 (252)
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHH------HHHHHHhcCCeEEEEEcCCCCHHHHHHHHHH
Confidence 456899999999999999999999999 589999886431110 111111 12357789999999988877664
Q ss_pred ------CCCEEEEcCCCC--------CCCCchhhhHHHHHHHHHHHHHHH----HhcCCCEEEEecCccccccCCCCcCC
Q 047227 83 ------GAEVVFHMAAPN--------SSINNHKLHHSVNVEGTKNVIDAC----AELKVKRLIYTSSPSVVFDGVHGIIN 144 (485)
Q Consensus 83 ------~~d~Vih~aa~~--------~~~~~~~~~~~~nv~~t~~ll~a~----~~~~v~r~V~~SS~~vy~~~~~~~~~ 144 (485)
..|+|||+|+.. ...++++..+++|+.++..+++++ ++.+.+++|++||...+.
T Consensus 79 ~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~-------- 150 (252)
T PRK07035 79 IRERHGRLDILVNNAAANPYFGHILDTDLGAFQKTVDVNIRGYFFMSVEAGKLMKEQGGGSIVNVASVNGVS-------- 150 (252)
T ss_pred HHHHcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCcEEEEECchhhcC--------
Confidence 489999999832 122345568899999998887776 444567999999864432
Q ss_pred CCCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCCh--HHHHHHHHcCCCeEEecCCCc
Q 047227 145 GNEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLLV--PSLVAAARAGKSKFIIGDGNN 219 (485)
Q Consensus 145 ~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~~--~~~~~~~~~g~~~~~~g~g~~ 219 (485)
+..+...|+.+|...|.+++.++.+ .|++++++.||.+-.+...... ...........+
T Consensus 151 -------~~~~~~~Y~~sK~al~~~~~~l~~e~~~~gi~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~--------- 214 (252)
T PRK07035 151 -------PGDFQGIYSITKAAVISMTKAFAKECAPFGIRVNALLPGLTDTKFASALFKNDAILKQALAHIP--------- 214 (252)
T ss_pred -------CCCCCcchHHHHHHHHHHHHHHHHHHhhcCEEEEEEeeccccCcccccccCCHHHHHHHHccCC---------
Confidence 1235568999999999999987653 4899999999998654322111 112222221111
Q ss_pred eeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCC
Q 047227 220 VYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNM 260 (485)
Q Consensus 220 ~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~ 260 (485)
...+..++|+|+++..++..... ...|+.+.+.++
T Consensus 215 ~~~~~~~~~va~~~~~l~~~~~~------~~~g~~~~~dgg 249 (252)
T PRK07035 215 LRRHAEPSEMAGAVLYLASDASS------YTTGECLNVDGG 249 (252)
T ss_pred CCCcCCHHHHHHHHHHHhCcccc------CccCCEEEeCCC
Confidence 12356789999999987653221 256777777654
|
|
| >PRK07478 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.2e-15 Score=145.90 Aligned_cols=219 Identities=18% Similarity=0.152 Sum_probs=148.6
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhh--cCCCeEEEEecCCCHHHHHHHhc
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEAL--RSGRAHYVSFDLRHKAQVLQALQ 82 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~Dl~d~~~l~~~~~ 82 (485)
.+++++|||||+|.||.++++.|.++| ++|.+++|....... ....+ ...++.++.+|+.|++++.++++
T Consensus 4 ~~~k~~lItGas~giG~~ia~~l~~~G-~~v~~~~r~~~~~~~-------~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 75 (254)
T PRK07478 4 LNGKVAIITGASSGIGRAAAKLFAREG-AKVVVGARRQAELDQ-------LVAEIRAEGGEAVALAGDVRDEAYAKALVA 75 (254)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCC-CEEEEEeCCHHHHHH-------HHHHHHhcCCcEEEEEcCCCCHHHHHHHHH
Confidence 346899999999999999999999999 589999886432111 11111 12468889999999998887765
Q ss_pred -------CCCEEEEcCCCCC--------CCCchhhhHHHHHHHHHHHHH----HHHhcCCCEEEEecCccccccCCCCcC
Q 047227 83 -------GAEVVFHMAAPNS--------SINNHKLHHSVNVEGTKNVID----ACAELKVKRLIYTSSPSVVFDGVHGII 143 (485)
Q Consensus 83 -------~~d~Vih~aa~~~--------~~~~~~~~~~~nv~~t~~ll~----a~~~~~v~r~V~~SS~~vy~~~~~~~~ 143 (485)
++|++||+|+... ..++.+..+++|+.++..+.+ .+++.+.+++|++||...+..
T Consensus 76 ~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~l~~~~~~~iv~~sS~~~~~~------ 149 (254)
T PRK07478 76 LAVERFGGLDIAFNNAGTLGEMGPVAEMSLEGWRETLATNLTSAFLGAKHQIPAMLARGGGSLIFTSTFVGHTA------ 149 (254)
T ss_pred HHHHhcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCceEEEEechHhhcc------
Confidence 4899999999421 113456789999987776655 445555678999999755420
Q ss_pred CCCCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCC--hHHHHHHHHcCCCeEEecCCC
Q 047227 144 NGNEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLL--VPSLVAAARAGKSKFIIGDGN 218 (485)
Q Consensus 144 ~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~--~~~~~~~~~~g~~~~~~g~g~ 218 (485)
+..+...|+.+|...+.+.+.++.+ .|+++.+++||.+-.+..... .+..........
T Consensus 150 --------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~--------- 212 (254)
T PRK07478 150 --------GFPGMAAYAASKAGLIGLTQVLAAEYGAQGIRVNALLPGGTDTPMGRAMGDTPEALAFVAGLH--------- 212 (254)
T ss_pred --------CCCCcchhHHHHHHHHHHHHHHHHHHhhcCEEEEEEeeCcccCcccccccCCHHHHHHHHhcC---------
Confidence 1234568999999999999887654 479999999999876532111 111111111111
Q ss_pred ceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCC
Q 047227 219 NVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNM 260 (485)
Q Consensus 219 ~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~ 260 (485)
....+..++|+|++++.++.... .-..|+.+.+.++
T Consensus 213 ~~~~~~~~~~va~~~~~l~s~~~------~~~~G~~~~~dgg 248 (254)
T PRK07478 213 ALKRMAQPEEIAQAALFLASDAA------SFVTGTALLVDGG 248 (254)
T ss_pred CCCCCcCHHHHHHHHHHHcCchh------cCCCCCeEEeCCc
Confidence 11235679999999988764221 1256777777554
|
|
| >PRK08265 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=6.8e-16 Score=148.23 Aligned_cols=218 Identities=17% Similarity=0.168 Sum_probs=149.0
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc--
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ-- 82 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 82 (485)
.+++++|||||+|.||+++++.|.++| ++|.+++|+..... + ..... ..++.++.+|+.|.+++.++++
T Consensus 4 ~~~k~vlItGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~----~---~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~ 74 (261)
T PRK08265 4 LAGKVAIVTGGATLIGAAVARALVAAG-ARVAIVDIDADNGA----A---VAASL-GERARFIATDITDDAAIERAVATV 74 (261)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCC-CEEEEEeCCHHHHH----H---HHHHh-CCeeEEEEecCCCHHHHHHHHHHH
Confidence 456899999999999999999999999 69999988643110 0 11111 3468899999999998877765
Q ss_pred -----CCCEEEEcCCCC------CCCCchhhhHHHHHHHHHHHHHHHHh---cCCCEEEEecCccccccCCCCcCCCCCC
Q 047227 83 -----GAEVVFHMAAPN------SSINNHKLHHSVNVEGTKNVIDACAE---LKVKRLIYTSSPSVVFDGVHGIINGNEA 148 (485)
Q Consensus 83 -----~~d~Vih~aa~~------~~~~~~~~~~~~nv~~t~~ll~a~~~---~~v~r~V~~SS~~vy~~~~~~~~~~~e~ 148 (485)
..|++||+|+.. ...+++...+++|+.++.++.+++.. .+-.++|++||.....
T Consensus 75 ~~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~g~ii~isS~~~~~------------ 142 (261)
T PRK08265 75 VARFGRVDILVNLACTYLDDGLASSRADWLAALDVNLVSAAMLAQAAHPHLARGGGAIVNFTSISAKF------------ 142 (261)
T ss_pred HHHhCCCCEEEECCCCCCCCcCcCCHHHHHHHHhHhhHHHHHHHHHHHHHHhcCCcEEEEECchhhcc------------
Confidence 479999999932 22335567889999999998887654 2346899999965542
Q ss_pred CCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCChH---HHHHHHHcCCCeEEecCCCceee
Q 047227 149 LPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLLVP---SLVAAARAGKSKFIIGDGNNVYD 222 (485)
Q Consensus 149 ~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~~~---~~~~~~~~g~~~~~~g~g~~~~~ 222 (485)
+......|+.+|...+.+.+.++.+ .|+++.+++||.+..+....... ........ . ......
T Consensus 143 ---~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~~~t~~~~~~~~~~~~~~~~~~~--~------~~p~~r 211 (261)
T PRK08265 143 ---AQTGRWLYPASKAAIRQLTRSMAMDLAPDGIRVNSVSPGWTWSRVMDELSGGDRAKADRVAA--P------FHLLGR 211 (261)
T ss_pred ---CCCCCchhHHHHHHHHHHHHHHHHHhcccCEEEEEEccCCccChhhhhhcccchhHHHHhhc--c------cCCCCC
Confidence 1223457999999999998877643 58999999999886653111000 00001100 0 011123
Q ss_pred cccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCC
Q 047227 223 FTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNM 260 (485)
Q Consensus 223 ~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~ 260 (485)
+...+|+|+++..++.... ....|+.+.+.++
T Consensus 212 ~~~p~dva~~~~~l~s~~~------~~~tG~~i~vdgg 243 (261)
T PRK08265 212 VGDPEEVAQVVAFLCSDAA------SFVTGADYAVDGG 243 (261)
T ss_pred ccCHHHHHHHHHHHcCccc------cCccCcEEEECCC
Confidence 5678999999998865221 2256788888765
|
|
| >PRK06949 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.4e-15 Score=145.54 Aligned_cols=217 Identities=14% Similarity=0.082 Sum_probs=149.3
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhh--cCCCeEEEEecCCCHHHHHHHhc
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEAL--RSGRAHYVSFDLRHKAQVLQALQ 82 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~Dl~d~~~l~~~~~ 82 (485)
..+++++||||+|+||+++++.|.++| ++|++++|+...... +...+ ...++..+.+|+.+.+++.++++
T Consensus 7 ~~~k~ilItGasg~IG~~~a~~l~~~G-~~Vi~~~r~~~~~~~-------~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~ 78 (258)
T PRK06949 7 LEGKVALVTGASSGLGARFAQVLAQAG-AKVVLASRRVERLKE-------LRAEIEAEGGAAHVVSLDVTDYQSIKAAVA 78 (258)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHH-------HHHHHHhcCCcEEEEEecCCCHHHHHHHHH
Confidence 456899999999999999999999999 589999886432100 11111 13468899999999988888765
Q ss_pred -------CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHHHhc----C--------CCEEEEecCccccc
Q 047227 83 -------GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDACAEL----K--------VKRLIYTSSPSVVF 136 (485)
Q Consensus 83 -------~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~~~~----~--------v~r~V~~SS~~vy~ 136 (485)
++|+|||+++... ...++...+++|+.++.++++++... . ..++|++||...+.
T Consensus 79 ~~~~~~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~ 158 (258)
T PRK06949 79 HAETEAGTIDILVNNSGVSTTQKLVDVTPADFDFVFDTNTRGAFFVAQEVAKRMIARAKGAGNTKPGGRIINIASVAGLR 158 (258)
T ss_pred HHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcCCcCCCCCCCeEEEEECcccccC
Confidence 4899999999321 22356678899999999998877531 1 25899999976542
Q ss_pred cCCCCcCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCC-hHHHHHHHHcCCCeE
Q 047227 137 DGVHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLL-VPSLVAAARAGKSKF 212 (485)
Q Consensus 137 ~~~~~~~~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~-~~~~~~~~~~g~~~~ 212 (485)
+..+...|+.+|...|.+++.++.+ .++++++++||.++++..... .........+-.
T Consensus 159 ---------------~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~--- 220 (258)
T PRK06949 159 ---------------VLPQIGLYCMSKAAVVHMTRAMALEWGRHGINVNAICPGYIDTEINHHHWETEQGQKLVSML--- 220 (258)
T ss_pred ---------------CCCCccHHHHHHHHHHHHHHHHHHHHHhcCeEEEEEeeCCCcCCcchhccChHHHHHHHhcC---
Confidence 1234568999999999998887643 589999999999998864321 111111111110
Q ss_pred EecCCCceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeC
Q 047227 213 IIGDGNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTN 259 (485)
Q Consensus 213 ~~g~g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~ 259 (485)
....+...+|++.++..++..... ...|....+.+
T Consensus 221 ------~~~~~~~p~~~~~~~~~l~~~~~~------~~~G~~i~~dg 255 (258)
T PRK06949 221 ------PRKRVGKPEDLDGLLLLLAADESQ------FINGAIISADD 255 (258)
T ss_pred ------CCCCCcCHHHHHHHHHHHhChhhc------CCCCcEEEeCC
Confidence 112355579999999887552211 24566555543
|
|
| >PRK07109 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=8.8e-16 Score=152.54 Aligned_cols=201 Identities=14% Similarity=0.066 Sum_probs=139.6
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhh--cCCCeEEEEecCCCHHHHHHH
Q 047227 3 GEENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEAL--RSGRAHYVSFDLRHKAQVLQA 80 (485)
Q Consensus 3 ~~~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~Dl~d~~~l~~~ 80 (485)
...++++|+||||+|.||.++++.|.++| ++|++++|+...... ....+ ...++.++.+|++|.+++.++
T Consensus 4 ~~l~~k~vlITGas~gIG~~la~~la~~G-~~Vvl~~R~~~~l~~-------~~~~l~~~g~~~~~v~~Dv~d~~~v~~~ 75 (334)
T PRK07109 4 KPIGRQVVVITGASAGVGRATARAFARRG-AKVVLLARGEEGLEA-------LAAEIRAAGGEALAVVADVADAEAVQAA 75 (334)
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHH-------HHHHHHHcCCcEEEEEecCCCHHHHHHH
Confidence 35567899999999999999999999999 689998886431110 11111 134688899999999988877
Q ss_pred hc-------CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHH----HHHHHHhcCCCEEEEecCccccccCCCCc
Q 047227 81 LQ-------GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKN----VIDACAELKVKRLIYTSSPSVVFDGVHGI 142 (485)
Q Consensus 81 ~~-------~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~----ll~a~~~~~v~r~V~~SS~~vy~~~~~~~ 142 (485)
++ ++|++||+|+... ..++.+..+++|+.++.+ ++..+++.+..++|++||...+..
T Consensus 76 ~~~~~~~~g~iD~lInnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~~~~~~~g~iV~isS~~~~~~----- 150 (334)
T PRK07109 76 ADRAEEELGPIDTWVNNAMVTVFGPFEDVTPEEFRRVTEVTYLGVVHGTLAALRHMRPRDRGAIIQVGSALAYRS----- 150 (334)
T ss_pred HHHHHHHCCCCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEeCChhhccC-----
Confidence 64 4899999999321 223445677888776655 455555556679999999877631
Q ss_pred CCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhCC-----CCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCC
Q 047227 143 INGNEALPYPPKHNDFYSATKAEGEALVIKANGT-----NGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDG 217 (485)
Q Consensus 143 ~~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~-----~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g 217 (485)
......|+.+|...+.+.+.++.+ .++++++++|+.+-.|.. .. ..... +. ..
T Consensus 151 ----------~~~~~~Y~asK~a~~~~~~~l~~el~~~~~~I~v~~v~Pg~v~T~~~----~~-~~~~~-~~------~~ 208 (334)
T PRK07109 151 ----------IPLQSAYCAAKHAIRGFTDSLRCELLHDGSPVSVTMVQPPAVNTPQF----DW-ARSRL-PV------EP 208 (334)
T ss_pred ----------CCcchHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEeCCCccCchh----hh-hhhhc-cc------cc
Confidence 223568999999988887765432 469999999999876631 11 11000 10 11
Q ss_pred CceeecccHHHHHHHHHHHHH
Q 047227 218 NNVYDFTYVANVAHAHICAER 238 (485)
Q Consensus 218 ~~~~~~i~v~D~a~a~~~~~~ 238 (485)
.....+..++|+|++++.++.
T Consensus 209 ~~~~~~~~pe~vA~~i~~~~~ 229 (334)
T PRK07109 209 QPVPPIYQPEVVADAILYAAE 229 (334)
T ss_pred cCCCCCCCHHHHHHHHHHHHh
Confidence 112346789999999999876
|
|
| >PRK06124 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=8.2e-16 Score=147.13 Aligned_cols=218 Identities=14% Similarity=0.119 Sum_probs=152.1
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhh--cCCCeEEEEecCCCHHHHHHHhc
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEAL--RSGRAHYVSFDLRHKAQVLQALQ 82 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~Dl~d~~~l~~~~~ 82 (485)
.++|+++||||+|+||+++++.|.++| +.|.+++|....... ....+ ...++.++.+|++|++++.++++
T Consensus 9 ~~~k~ilItGas~~IG~~la~~l~~~G-~~v~~~~r~~~~~~~-------~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 80 (256)
T PRK06124 9 LAGQVALVTGSARGLGFEIARALAGAG-AHVLVNGRNAATLEA-------AVAALRAAGGAAEALAFDIADEEAVAAAFA 80 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHcC-CeEEEEeCCHHHHHH-------HHHHHHhcCCceEEEEccCCCHHHHHHHHH
Confidence 457899999999999999999999999 699999886431100 11111 13468899999999998877765
Q ss_pred -------CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHHHh----cCCCEEEEecCccccccCCCCcCC
Q 047227 83 -------GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDACAE----LKVKRLIYTSSPSVVFDGVHGIIN 144 (485)
Q Consensus 83 -------~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~~~----~~v~r~V~~SS~~vy~~~~~~~~~ 144 (485)
+.|+|||+++... ..++++..+++|+.++.++.+++.+ .+.+++|++||...+.
T Consensus 81 ~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~-------- 152 (256)
T PRK06124 81 RIDAEHGRLDILVNNVGARDRRPLAELDDAAIRALLETDLVAPILLSRLAAQRMKRQGYGRIIAITSIAGQV-------- 152 (256)
T ss_pred HHHHhcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEeechhcc--------
Confidence 3699999999321 2234566789999999999866644 5677999999965532
Q ss_pred CCCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCCh--HHHHHHHHcCCCeEEecCCCc
Q 047227 145 GNEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLLV--PSLVAAARAGKSKFIIGDGNN 219 (485)
Q Consensus 145 ~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~~--~~~~~~~~~g~~~~~~g~g~~ 219 (485)
+......|+.+|...+.+.+.++.+ .++++.+++|+.+.++...... ..+........ .
T Consensus 153 -------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~i~pg~v~t~~~~~~~~~~~~~~~~~~~~---------~ 216 (256)
T PRK06124 153 -------ARAGDAVYPAAKQGLTGLMRALAAEFGPHGITSNAIAPGYFATETNAAMAADPAVGPWLAQRT---------P 216 (256)
T ss_pred -------CCCCccHhHHHHHHHHHHHHHHHHHHHHhCcEEEEEEECCccCcchhhhccChHHHHHHHhcC---------C
Confidence 1123468999999999988876543 4799999999999987532211 12222222111 1
Q ss_pred eeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCC
Q 047227 220 VYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNM 260 (485)
Q Consensus 220 ~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~ 260 (485)
...+++++|++++++.++..... -..|+.+.+.++
T Consensus 217 ~~~~~~~~~~a~~~~~l~~~~~~------~~~G~~i~~dgg 251 (256)
T PRK06124 217 LGRWGRPEEIAGAAVFLASPAAS------YVNGHVLAVDGG 251 (256)
T ss_pred CCCCCCHHHHHHHHHHHcCcccC------CcCCCEEEECCC
Confidence 12478899999999988653221 145776666554
|
|
| >PRK08251 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.2e-15 Score=145.30 Aligned_cols=194 Identities=16% Similarity=0.088 Sum_probs=138.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc----
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ---- 82 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~---- 82 (485)
++++|||||+|+||.++++.|.++| ++|.+.+|........... +.......++.++.+|++|++++.++++
T Consensus 2 ~k~vlItGas~giG~~la~~l~~~g-~~v~~~~r~~~~~~~~~~~---~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 77 (248)
T PRK08251 2 RQKILITGASSGLGAGMAREFAAKG-RDLALCARRTDRLEELKAE---LLARYPGIKVAVAALDVNDHDQVFEVFAEFRD 77 (248)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHH---HHhhCCCceEEEEEcCCCCHHHHHHHHHHHHH
Confidence 4789999999999999999999999 6898888864321110000 1111113468899999999988877664
Q ss_pred ---CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHHH----hcCCCEEEEecCccccccCCCCcCCCCCC
Q 047227 83 ---GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDACA----ELKVKRLIYTSSPSVVFDGVHGIINGNEA 148 (485)
Q Consensus 83 ---~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~~----~~~v~r~V~~SS~~vy~~~~~~~~~~~e~ 148 (485)
++|+|||+||... ........+++|+.++.++++++. +.+.+++|++||...+...
T Consensus 78 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~---------- 147 (248)
T PRK08251 78 ELGGLDRVIVNAGIGKGARLGTGKFWANKATAETNFVAALAQCEAAMEIFREQGSGHLVLISSVSAVRGL---------- 147 (248)
T ss_pred HcCCCCEEEECCCcCCCCCcCcCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEeccccccCC----------
Confidence 5899999999321 122345678999999998888764 4567799999996654210
Q ss_pred CCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCceeeccc
Q 047227 149 LPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFTY 225 (485)
Q Consensus 149 ~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~ 225 (485)
..+.+.|+.+|...+.+.+.+..+ .++++++++|+.+.++.... .+. ....+.
T Consensus 148 ----~~~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~v~t~~~~~----------~~~----------~~~~~~ 203 (248)
T PRK08251 148 ----PGVKAAYAASKAGVASLGEGLRAELAKTPIKVSTIEPGYIRSEMNAK----------AKS----------TPFMVD 203 (248)
T ss_pred ----CCCcccHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCcCcchhhhc----------ccc----------CCccCC
Confidence 123568999999999888776643 47999999999997663210 000 112567
Q ss_pred HHHHHHHHHHHHH
Q 047227 226 VANVAHAHICAER 238 (485)
Q Consensus 226 v~D~a~a~~~~~~ 238 (485)
.+|.|++++.+++
T Consensus 204 ~~~~a~~i~~~~~ 216 (248)
T PRK08251 204 TETGVKALVKAIE 216 (248)
T ss_pred HHHHHHHHHHHHh
Confidence 8999999998876
|
|
| >PRK08226 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.2e-15 Score=143.67 Aligned_cols=219 Identities=18% Similarity=0.167 Sum_probs=148.9
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhh-cCCCeEEEEecCCCHHHHHHHhc-
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEAL-RSGRAHYVSFDLRHKAQVLQALQ- 82 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~- 82 (485)
..+++++||||+|+||+++++.|+++| ++|.+++|..... + ...... ...++.++.+|+.|++++.++++
T Consensus 4 ~~~~~~lItG~s~giG~~la~~l~~~G-~~Vv~~~r~~~~~-----~--~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~ 75 (263)
T PRK08226 4 LTGKTALITGALQGIGEGIARVFARHG-ANLILLDISPEIE-----K--LADELCGRGHRCTAVVADVRDPASVAAAIKR 75 (263)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCC-CEEEEecCCHHHH-----H--HHHHHHHhCCceEEEECCCCCHHHHHHHHHH
Confidence 346899999999999999999999999 6899888764210 0 011111 13467889999999998887765
Q ss_pred ------CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHHHh----cCCCEEEEecCccccccCCCCcCCC
Q 047227 83 ------GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDACAE----LKVKRLIYTSSPSVVFDGVHGIING 145 (485)
Q Consensus 83 ------~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~~~----~~v~r~V~~SS~~vy~~~~~~~~~~ 145 (485)
+.|+|||+|+... ...+.+..+++|+.++.++++++.. .+..++|++||......
T Consensus 76 ~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~-------- 147 (263)
T PRK08226 76 AKEKEGRIDILVNNAGVCRLGSFLDMSDEDRDFHIDINIKGVWNVTKAVLPEMIARKDGRIVMMSSVTGDMV-------- 147 (263)
T ss_pred HHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEECcHHhccc--------
Confidence 4799999999321 1223455789999999999888654 34568999998543100
Q ss_pred CCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCC--------ChHHHHHHHHcCCCeEEe
Q 047227 146 NEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRL--------LVPSLVAAARAGKSKFII 214 (485)
Q Consensus 146 ~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~--------~~~~~~~~~~~g~~~~~~ 214 (485)
+......|+.+|...|.+.+.++.+ .++++..++||.+.++.... ........+..+.
T Consensus 148 ------~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~i~v~~i~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~----- 216 (263)
T PRK08226 148 ------ADPGETAYALTKAAIVGLTKSLAVEYAQSGIRVNAICPGYVRTPMAESIARQSNPEDPESVLTEMAKAI----- 216 (263)
T ss_pred ------CCCCcchHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCcccCHHHHhhhhhccCCCcHHHHHHHhccC-----
Confidence 1223467999999999999887653 47999999999998763211 1112223332221
Q ss_pred cCCCceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCC
Q 047227 215 GDGNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNM 260 (485)
Q Consensus 215 g~g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~ 260 (485)
....+..++|+|+++..++... .....|+.+.+.++
T Consensus 217 ----p~~~~~~~~~va~~~~~l~~~~------~~~~~g~~i~~dgg 252 (263)
T PRK08226 217 ----PLRRLADPLEVGELAAFLASDE------SSYLTGTQNVIDGG 252 (263)
T ss_pred ----CCCCCCCHHHHHHHHHHHcCch------hcCCcCceEeECCC
Confidence 1223567999999888775421 12256777777654
|
|
| >PRK06114 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.4e-15 Score=145.38 Aligned_cols=222 Identities=16% Similarity=0.094 Sum_probs=149.9
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhh-cCCCeEEEEecCCCHHHHHHHhc-
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEAL-RSGRAHYVSFDLRHKAQVLQALQ- 82 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~- 82 (485)
.+++++|||||+|.||+++++.|.++| ++|.+.+|....... . ...... ...++..+.+|+.|++++.++++
T Consensus 6 ~~~k~~lVtG~s~gIG~~ia~~l~~~G-~~v~~~~r~~~~~~~---~--~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~ 79 (254)
T PRK06114 6 LDGQVAFVTGAGSGIGQRIAIGLAQAG-ADVALFDLRTDDGLA---E--TAEHIEAAGRRAIQIAADVTSKADLRAAVAR 79 (254)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEeCCcchHHH---H--HHHHHHhcCCceEEEEcCCCCHHHHHHHHHH
Confidence 356899999999999999999999999 689888876431100 0 011111 13467889999999988887765
Q ss_pred ------CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHHH----hcCCCEEEEecCccccccCCCCcCCC
Q 047227 83 ------GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDACA----ELKVKRLIYTSSPSVVFDGVHGIING 145 (485)
Q Consensus 83 ------~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~~----~~~v~r~V~~SS~~vy~~~~~~~~~~ 145 (485)
+.|+|||+|+... ..++.+..+++|+.++..+++++. +.+.+++|++||...+...
T Consensus 80 ~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~------- 152 (254)
T PRK06114 80 TEAELGALTLAVNAAGIANANPAEEMEEEQWQTVMDINLTGVFLSCQAEARAMLENGGGSIVNIASMSGIIVN------- 152 (254)
T ss_pred HHHHcCCCCEEEECCCCCCCCChHhCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcCCcEEEEECchhhcCCC-------
Confidence 3699999999322 233567788999999987766653 4455689999997654211
Q ss_pred CCCCCCCCCCCchHHHHHHHHHHHHHHHhC---CCCceEEEEecCCcccCCCCC-ChHHHHHHHHcCCCeEEecCCCcee
Q 047227 146 NEALPYPPKHNDFYSATKAEGEALVIKANG---TNGLLTCCIRPSSIFGPGDRL-LVPSLVAAARAGKSKFIIGDGNNVY 221 (485)
Q Consensus 146 ~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~---~~g~~~~ilRp~~v~Gp~~~~-~~~~~~~~~~~g~~~~~~g~g~~~~ 221 (485)
+..+...|+.+|+..+.+.+.++. ..|+++.+++||.+..+.... .............+ ..
T Consensus 153 ------~~~~~~~Y~~sKaa~~~l~~~la~e~~~~gi~v~~v~PG~i~t~~~~~~~~~~~~~~~~~~~p---------~~ 217 (254)
T PRK06114 153 ------RGLLQAHYNASKAGVIHLSKSLAMEWVGRGIRVNSISPGYTATPMNTRPEMVHQTKLFEEQTP---------MQ 217 (254)
T ss_pred ------CCCCcchHHHHHHHHHHHHHHHHHHHhhcCeEEEEEeecCccCcccccccchHHHHHHHhcCC---------CC
Confidence 011246799999999999888764 468999999999998774321 11111111221111 12
Q ss_pred ecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCC
Q 047227 222 DFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNM 260 (485)
Q Consensus 222 ~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~ 260 (485)
.+..++|+|.+++.++.... .-..|+.+.+.++
T Consensus 218 r~~~~~dva~~~~~l~s~~~------~~~tG~~i~~dgg 250 (254)
T PRK06114 218 RMAKVDEMVGPAVFLLSDAA------SFCTGVDLLVDGG 250 (254)
T ss_pred CCcCHHHHHHHHHHHcCccc------cCcCCceEEECcC
Confidence 35568999999988764211 2256777777664
|
|
| >TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=99.69 E-value=6e-16 Score=166.87 Aligned_cols=230 Identities=22% Similarity=0.244 Sum_probs=150.3
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc--
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ-- 82 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 82 (485)
..+|++|||||+|+||+++++.|+++| ++|.+++|........... +.......++..+.+|++|.+++.++++
T Consensus 412 l~gkvvLVTGasggIG~aiA~~La~~G-a~Vvi~~r~~~~~~~~~~~---l~~~~~~~~~~~v~~Dvtd~~~v~~a~~~i 487 (676)
T TIGR02632 412 LARRVAFVTGGAGGIGRETARRLAAEG-AHVVLADLNLEAAEAVAAE---INGQFGAGRAVALKMDVTDEQAVKAAFADV 487 (676)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHhCC-CEEEEEeCCHHHHHHHHHH---HHhhcCCCcEEEEECCCCCHHHHHHHHHHH
Confidence 356899999999999999999999999 6999998864321100000 0100112357788999999998888775
Q ss_pred -----CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHH----HHhcC-CCEEEEecCccccccCCCCcCCC
Q 047227 83 -----GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDA----CAELK-VKRLIYTSSPSVVFDGVHGIING 145 (485)
Q Consensus 83 -----~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a----~~~~~-v~r~V~~SS~~vy~~~~~~~~~~ 145 (485)
++|+|||+||... ...++...+++|+.+...+..+ +++.+ ..++|++||...+.
T Consensus 488 ~~~~g~iDilV~nAG~~~~~~~~~~~~e~~~~~~~vN~~g~~~l~~~al~~m~~~~~~g~IV~iSS~~a~~--------- 558 (676)
T TIGR02632 488 ALAYGGVDIVVNNAGIATSSPFEETTLQEWQLNLDILATGYFLVAREAFRQMREQGLGGNIVFIASKNAVY--------- 558 (676)
T ss_pred HHhcCCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeChhhcC---------
Confidence 5899999999322 1123566788898887766544 33444 35899999965542
Q ss_pred CCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcc-cCCC--CCChHHHHHHHHcCCCe----EEec
Q 047227 146 NEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIF-GPGD--RLLVPSLVAAARAGKSK----FIIG 215 (485)
Q Consensus 146 ~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~-Gp~~--~~~~~~~~~~~~~g~~~----~~~g 215 (485)
+......|+.+|...|.+++.++.+ .|+++.+++|+.++ |++. ...... .....+... ..+.
T Consensus 559 ------~~~~~~aY~aSKaA~~~l~r~lA~el~~~gIrVn~V~Pg~V~~~s~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 630 (676)
T TIGR02632 559 ------AGKNASAYSAAKAAEAHLARCLAAEGGTYGIRVNTVNPDAVLQGSGIWDGEWREE--RAAAYGIPADELEEHYA 630 (676)
T ss_pred ------CCCCCHHHHHHHHHHHHHHHHHHHHhcccCeEEEEEECCceecCcccccccchhh--hhhcccCChHHHHHHHH
Confidence 1234578999999999999887654 57999999999987 3321 111000 000000000 0011
Q ss_pred CCCceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCC
Q 047227 216 DGNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNME 261 (485)
Q Consensus 216 ~g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~ 261 (485)
.......+++++|+|+++..++.... ....|+.+++.++.
T Consensus 631 ~r~~l~r~v~peDVA~av~~L~s~~~------~~~TG~~i~vDGG~ 670 (676)
T TIGR02632 631 KRTLLKRHIFPADIAEAVFFLASSKS------EKTTGCIITVDGGV 670 (676)
T ss_pred hcCCcCCCcCHHHHHHHHHHHhCCcc------cCCcCcEEEECCCc
Confidence 22234567899999999998764221 22568889987764
|
|
| >PRK07576 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=6.9e-16 Score=148.42 Aligned_cols=220 Identities=24% Similarity=0.184 Sum_probs=148.8
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhh-cCCCeEEEEecCCCHHHHHHHhc-
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEAL-RSGRAHYVSFDLRHKAQVLQALQ- 82 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~- 82 (485)
.+++++|||||+|.||+++++.|+++| +.|++++|....... ...... ...++.++.+|++|++++.++++
T Consensus 7 ~~~k~ilItGasggIG~~la~~l~~~G-~~V~~~~r~~~~~~~------~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~ 79 (264)
T PRK07576 7 FAGKNVVVVGGTSGINLGIAQAFARAG-ANVAVASRSQEKVDA------AVAQLQQAGPEGLGVSADVRDYAAVEAAFAQ 79 (264)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEeCCHHHHHH------HHHHHHHhCCceEEEECCCCCHHHHHHHHHH
Confidence 456899999999999999999999999 589999886432110 011111 12456788999999988877764
Q ss_pred ------CCCEEEEcCCCC-------CCCCchhhhHHHHHHHHHHHHHHHHhc---CCCEEEEecCccccccCCCCcCCCC
Q 047227 83 ------GAEVVFHMAAPN-------SSINNHKLHHSVNVEGTKNVIDACAEL---KVKRLIYTSSPSVVFDGVHGIINGN 146 (485)
Q Consensus 83 ------~~d~Vih~aa~~-------~~~~~~~~~~~~nv~~t~~ll~a~~~~---~v~r~V~~SS~~vy~~~~~~~~~~~ 146 (485)
++|+|||+|+.. ...+++...+++|+.++.++++++... .-+++|++||...+.
T Consensus 80 ~~~~~~~iD~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~l~~~~g~iv~iss~~~~~---------- 149 (264)
T PRK07576 80 IADEFGPIDVLVSGAAGNFPAPAAGMSANGFKTVVDIDLLGTFNVLKAAYPLLRRPGASIIQISAPQAFV---------- 149 (264)
T ss_pred HHHHcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCEEEEECChhhcc----------
Confidence 379999999721 122345667889999999999887642 125899999965542
Q ss_pred CCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCC-CCCChHH--HHHHHHcCCCeEEecCCCce
Q 047227 147 EALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPG-DRLLVPS--LVAAARAGKSKFIIGDGNNV 220 (485)
Q Consensus 147 e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~-~~~~~~~--~~~~~~~g~~~~~~g~g~~~ 220 (485)
+......|+.+|...|.+++.++.+ .++++++++|+.+.+.. .....+. ........ ...
T Consensus 150 -----~~~~~~~Y~asK~a~~~l~~~la~e~~~~gi~v~~v~pg~~~~t~~~~~~~~~~~~~~~~~~~---------~~~ 215 (264)
T PRK07576 150 -----PMPMQAHVCAAKAGVDMLTRTLALEWGPEGIRVNSIVPGPIAGTEGMARLAPSPELQAAVAQS---------VPL 215 (264)
T ss_pred -----CCCCccHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEecccccCcHHHhhcccCHHHHHHHHhc---------CCC
Confidence 1234568999999999999887643 57999999999987532 1111110 11111111 112
Q ss_pred eecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCC
Q 047227 221 YDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNME 261 (485)
Q Consensus 221 ~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~ 261 (485)
..+...+|+|++++.++.... ....|+.+.+.++.
T Consensus 216 ~~~~~~~dva~~~~~l~~~~~------~~~~G~~~~~~gg~ 250 (264)
T PRK07576 216 KRNGTKQDIANAALFLASDMA------SYITGVVLPVDGGW 250 (264)
T ss_pred CCCCCHHHHHHHHHHHcChhh------cCccCCEEEECCCc
Confidence 346678999999998875321 12567777776653
|
|
| >PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.7e-15 Score=142.67 Aligned_cols=220 Identities=17% Similarity=0.070 Sum_probs=147.3
Q ss_pred CCCEEEEEcCCC--chHHHHHHHHHhcCCceEEEeecCCccccC-----Cccchhhhhhhh--cCCCeEEEEecCCCHHH
Q 047227 6 NERLCVVTGGRG--FAARHLVEMLIRYDMFSVRIADLSDSIALE-----PHEEQGILGEAL--RSGRAHYVSFDLRHKAQ 76 (485)
Q Consensus 6 ~~~~iLVtGgtG--~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~-----~~~~~~~~~~~~--~~~~v~~~~~Dl~d~~~ 76 (485)
++++||||||+| .||.++++.|.++| +.|.+++|.+..... ...... +...+ ...++.++.+|++|.++
T Consensus 4 ~~k~vlItGas~~~giG~~la~~l~~~G-~~vi~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~D~~~~~~ 81 (256)
T PRK12748 4 MKKIALVTGASRLNGIGAAVCRRLAAKG-IDIFFTYWSPYDKTMPWGMHDKEPVL-LKEEIESYGVRCEHMEIDLSQPYA 81 (256)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHcC-CcEEEEcCCccccccccccchhhHHH-HHHHHHhcCCeEEEEECCCCCHHH
Confidence 457899999996 69999999999999 689888876321100 001100 11111 12468899999999988
Q ss_pred HHHHhc-------CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHHHhc----CCCEEEEecCccccccC
Q 047227 77 VLQALQ-------GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDACAEL----KVKRLIYTSSPSVVFDG 138 (485)
Q Consensus 77 l~~~~~-------~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~~~~----~v~r~V~~SS~~vy~~~ 138 (485)
+..+++ ++|+|||+|+... ...+++..+++|+.++.++++++... +.+++|++||...+.
T Consensus 82 ~~~~~~~~~~~~g~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~ss~~~~~-- 159 (256)
T PRK12748 82 PNRVFYAVSERLGDPSILINNAAYSTHTRLEELTAEQLDKHYAVNVRATMLLSSAFAKQYDGKAGGRIINLTSGQSLG-- 159 (256)
T ss_pred HHHHHHHHHHhCCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCeEEEEECCccccC--
Confidence 776654 3799999998321 12345667899999999999988643 346899999976653
Q ss_pred CCCcCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEec
Q 047227 139 VHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIG 215 (485)
Q Consensus 139 ~~~~~~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g 215 (485)
+......|+.+|...|.+++.++.+ .+++++.++|+.+..+... ...........+
T Consensus 160 -------------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~i~Pg~~~t~~~~---~~~~~~~~~~~~----- 218 (256)
T PRK12748 160 -------------PMPDELAYAATKGAIEAFTKSLAPELAEKGITVNAVNPGPTDTGWIT---EELKHHLVPKFP----- 218 (256)
T ss_pred -------------CCCCchHHHHHHHHHHHHHHHHHHHHHHhCeEEEEEEeCcccCCCCC---hhHHHhhhccCC-----
Confidence 1224467999999999998877543 5899999999987655322 111111111110
Q ss_pred CCCceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCC
Q 047227 216 DGNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNM 260 (485)
Q Consensus 216 ~g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~ 260 (485)
...+...+|+|+++..++.... ....|+.+++.++
T Consensus 219 ----~~~~~~~~~~a~~~~~l~~~~~------~~~~g~~~~~d~g 253 (256)
T PRK12748 219 ----QGRVGEPVDAARLIAFLVSEEA------KWITGQVIHSEGG 253 (256)
T ss_pred ----CCCCcCHHHHHHHHHHHhCccc------ccccCCEEEecCC
Confidence 1123457999999887654211 1256788888665
|
|
| >PRK07097 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.3e-15 Score=144.82 Aligned_cols=219 Identities=12% Similarity=0.073 Sum_probs=150.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhh-cCCCeEEEEecCCCHHHHHHHhc--
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEAL-RSGRAHYVSFDLRHKAQVLQALQ-- 82 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~-- 82 (485)
++++++||||+|.||.+++++|+++| ++|.+++|....... ...... ...++..+.+|++|++++.++++
T Consensus 9 ~~k~~lItGa~~~iG~~ia~~l~~~G-~~vv~~~~~~~~~~~------~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 81 (265)
T PRK07097 9 KGKIALITGASYGIGFAIAKAYAKAG-ATIVFNDINQELVDK------GLAAYRELGIEAHGYVCDVTDEDGVQAMVSQI 81 (265)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCC-CeEEEEeCCHHHHHH------HHHHHHhcCCceEEEEcCCCCHHHHHHHHHHH
Confidence 46899999999999999999999999 588888776431110 111111 12368889999999998888774
Q ss_pred -----CCCEEEEcCCCC-------CCCCchhhhHHHHHHHHHHHHHHHHh----cCCCEEEEecCccccccCCCCcCCCC
Q 047227 83 -----GAEVVFHMAAPN-------SSINNHKLHHSVNVEGTKNVIDACAE----LKVKRLIYTSSPSVVFDGVHGIINGN 146 (485)
Q Consensus 83 -----~~d~Vih~aa~~-------~~~~~~~~~~~~nv~~t~~ll~a~~~----~~v~r~V~~SS~~vy~~~~~~~~~~~ 146 (485)
+.|+|||+||.. ...+++...+++|+.++..+.+++.. .+..++|++||.....
T Consensus 82 ~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~---------- 151 (265)
T PRK07097 82 EKEVGVIDILVNNAGIIKRIPMLEMSAEDFRQVIDIDLNAPFIVSKAVIPSMIKKGHGKIINICSMMSEL---------- 151 (265)
T ss_pred HHhCCCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCcEEEEEcCccccC----------
Confidence 389999999932 22345667788999998877776543 4567999999854321
Q ss_pred CCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCCh--------HHHHHHHHcCCCeEEec
Q 047227 147 EALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLLV--------PSLVAAARAGKSKFIIG 215 (485)
Q Consensus 147 e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~~--------~~~~~~~~~g~~~~~~g 215 (485)
+..+...|+.+|...+.+.+.++++ .|++++.++||.+..+...... ..+...+....
T Consensus 152 -----~~~~~~~Y~~sKaal~~l~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~------ 220 (265)
T PRK07097 152 -----GRETVSAYAAAKGGLKMLTKNIASEYGEANIQCNGIGPGYIATPQTAPLRELQADGSRHPFDQFIIAKT------ 220 (265)
T ss_pred -----CCCCCccHHHHHHHHHHHHHHHHHHhhhcCceEEEEEeccccccchhhhhhccccccchhHHHHHHhcC------
Confidence 1234578999999999999988765 4899999999999887432110 00111111111
Q ss_pred CCCceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCC
Q 047227 216 DGNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNME 261 (485)
Q Consensus 216 ~g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~ 261 (485)
....+...+|+|+.+..++.... ....|+.+.+.++.
T Consensus 221 ---~~~~~~~~~dva~~~~~l~~~~~------~~~~g~~~~~~gg~ 257 (265)
T PRK07097 221 ---PAARWGDPEDLAGPAVFLASDAS------NFVNGHILYVDGGI 257 (265)
T ss_pred ---CccCCcCHHHHHHHHHHHhCccc------CCCCCCEEEECCCc
Confidence 11235678999999998865321 22567777776653
|
|
| >PRK07102 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.1e-15 Score=145.07 Aligned_cols=191 Identities=13% Similarity=0.024 Sum_probs=138.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhh--hcCCCeEEEEecCCCHHHHHHHhc--
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEA--LRSGRAHYVSFDLRHKAQVLQALQ-- 82 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~Dl~d~~~l~~~~~-- 82 (485)
||+++||||+|+||.++++.|+++| ++|++++|....... ..... ....+++++.+|+.|.+++.++++
T Consensus 1 ~~~vlItGas~giG~~~a~~l~~~G-~~Vi~~~r~~~~~~~------~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 73 (243)
T PRK07102 1 MKKILIIGATSDIARACARRYAAAG-ARLYLAARDVERLER------LADDLRARGAVAVSTHELDILDTASHAAFLDSL 73 (243)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHhcC-CEEEEEeCCHHHHHH------HHHHHHHhcCCeEEEEecCCCChHHHHHHHHHH
Confidence 4789999999999999999999999 589999887542111 01111 113478899999999998887765
Q ss_pred --CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHHHh----cCCCEEEEecCccccccCCCCcCCCCCCC
Q 047227 83 --GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDACAE----LKVKRLIYTSSPSVVFDGVHGIINGNEAL 149 (485)
Q Consensus 83 --~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~~~----~~v~r~V~~SS~~vy~~~~~~~~~~~e~~ 149 (485)
.+|.|||+++... +.+++...+++|+.++.++++++.. .+.+++|++||.....
T Consensus 74 ~~~~d~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~------------- 140 (243)
T PRK07102 74 PALPDIVLIAVGTLGDQAACEADPALALREFRTNFEGPIALLTLLANRFEARGSGTIVGISSVAGDR------------- 140 (243)
T ss_pred hhcCCEEEECCcCCCCcccccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCCEEEEEecccccC-------------
Confidence 3799999998321 2223456789999999999888664 4567999999864321
Q ss_pred CCCCCCCchHHHHHHHHHHHHHHHhC---CCCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCceeecccH
Q 047227 150 PYPPKHNDFYSATKAEGEALVIKANG---TNGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFTYV 226 (485)
Q Consensus 150 ~~~~~~~~~Y~~sK~~~E~~~~~~~~---~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v 226 (485)
+......|+.+|...+.+.+.++. ..|+++.+++|+.+.++.... .. . .......+
T Consensus 141 --~~~~~~~Y~~sK~a~~~~~~~l~~el~~~gi~v~~v~pg~v~t~~~~~------------~~--~-----~~~~~~~~ 199 (243)
T PRK07102 141 --GRASNYVYGSAKAALTAFLSGLRNRLFKSGVHVLTVKPGFVRTPMTAG------------LK--L-----PGPLTAQP 199 (243)
T ss_pred --CCCCCcccHHHHHHHHHHHHHHHHHhhccCcEEEEEecCcccChhhhc------------cC--C-----CccccCCH
Confidence 012335799999999999888753 468999999999998763110 00 0 01135678
Q ss_pred HHHHHHHHHHHH
Q 047227 227 ANVAHAHICAER 238 (485)
Q Consensus 227 ~D~a~a~~~~~~ 238 (485)
+|+|+.++.+++
T Consensus 200 ~~~a~~i~~~~~ 211 (243)
T PRK07102 200 EEVAKDIFRAIE 211 (243)
T ss_pred HHHHHHHHHHHh
Confidence 999999998866
|
|
| >PRK07831 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.2e-15 Score=143.56 Aligned_cols=221 Identities=19% Similarity=0.119 Sum_probs=149.1
Q ss_pred CCCEEEEEcCCC-chHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc--
Q 047227 6 NERLCVVTGGRG-FAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ-- 82 (485)
Q Consensus 6 ~~~~iLVtGgtG-~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 82 (485)
+++++|||||+| -||+++++.|.++| +.|.+.+|.........+. +.......++..+.+|++|++++.++++
T Consensus 16 ~~k~vlItG~sg~gIG~~ia~~l~~~G-~~V~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 91 (262)
T PRK07831 16 AGKVVLVTAAAGTGIGSATARRALEEG-ARVVISDIHERRLGETADE---LAAELGLGRVEAVVCDVTSEAQVDALIDAA 91 (262)
T ss_pred CCCEEEEECCCcccHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHH---HHHhcCCceEEEEEccCCCHHHHHHHHHHH
Confidence 468999999998 59999999999999 5888888764311110000 1111112468889999999988887764
Q ss_pred -----CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHHHh----cC-CCEEEEecCccccccCCCCcCCC
Q 047227 83 -----GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDACAE----LK-VKRLIYTSSPSVVFDGVHGIING 145 (485)
Q Consensus 83 -----~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~~~----~~-v~r~V~~SS~~vy~~~~~~~~~~ 145 (485)
++|+|||+++... ..+++...+++|+.++..+++++.. .+ -.++|++||...+.
T Consensus 92 ~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~iv~~ss~~~~~--------- 162 (262)
T PRK07831 92 VERLGRLDVLVNNAGLGGQTPVVDMTDDEWSRVLDVTLTGTFRATRAALRYMRARGHGGVIVNNASVLGWR--------- 162 (262)
T ss_pred HHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEeCchhhcC---------
Confidence 4799999999321 1234566788999999988887654 23 35888888854331
Q ss_pred CCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCC-hHHHHHHHHcCCCeEEecCCCcee
Q 047227 146 NEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLL-VPSLVAAARAGKSKFIIGDGNNVY 221 (485)
Q Consensus 146 ~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~-~~~~~~~~~~g~~~~~~g~g~~~~ 221 (485)
+..+...|+.+|...+.+.+.++.+ +|+++++++|+.+..|..... -+..........+ ..
T Consensus 163 ------~~~~~~~Y~~sKaal~~~~~~la~e~~~~gI~v~~i~Pg~~~t~~~~~~~~~~~~~~~~~~~~---------~~ 227 (262)
T PRK07831 163 ------AQHGQAHYAAAKAGVMALTRCSALEAAEYGVRINAVAPSIAMHPFLAKVTSAELLDELAAREA---------FG 227 (262)
T ss_pred ------CCCCCcchHHHHHHHHHHHHHHHHHhCccCeEEEEEeeCCccCcccccccCHHHHHHHHhcCC---------CC
Confidence 1234567999999999999987743 689999999999988743211 1223333333221 12
Q ss_pred ecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCC
Q 047227 222 DFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNM 260 (485)
Q Consensus 222 ~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~ 260 (485)
-+...+|+|++++.++..... -..|+.+.+.++
T Consensus 228 r~~~p~~va~~~~~l~s~~~~------~itG~~i~v~~~ 260 (262)
T PRK07831 228 RAAEPWEVANVIAFLASDYSS------YLTGEVVSVSSQ 260 (262)
T ss_pred CCcCHHHHHHHHHHHcCchhc------CcCCceEEeCCC
Confidence 355689999999987652211 256777766653
|
|
| >PRK08339 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.4e-15 Score=144.57 Aligned_cols=222 Identities=13% Similarity=0.076 Sum_probs=149.6
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhh---cCCCeEEEEecCCCHHHHHHHh
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEAL---RSGRAHYVSFDLRHKAQVLQAL 81 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~Dl~d~~~l~~~~ 81 (485)
.+++++|||||+|.||.++++.|.++| ++|.+++|+...... ..+.+ ...++.++.+|++|++++.+++
T Consensus 6 l~~k~~lItGas~gIG~aia~~l~~~G-~~V~~~~r~~~~~~~-------~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~ 77 (263)
T PRK08339 6 LSGKLAFTTASSKGIGFGVARVLARAG-ADVILLSRNEENLKK-------AREKIKSESNVDVSYIVADLTKREDLERTV 77 (263)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHHHCC-CEEEEEeCCHHHHHH-------HHHHHHhhcCCceEEEEecCCCHHHHHHHH
Confidence 457899999999999999999999999 689999886432110 11111 1346889999999999888777
Q ss_pred c------CCCEEEEcCCCC-------CCCCchhhhHHHHHHHHHHHH----HHHHhcCCCEEEEecCccccccCCCCcCC
Q 047227 82 Q------GAEVVFHMAAPN-------SSINNHKLHHSVNVEGTKNVI----DACAELKVKRLIYTSSPSVVFDGVHGIIN 144 (485)
Q Consensus 82 ~------~~d~Vih~aa~~-------~~~~~~~~~~~~nv~~t~~ll----~a~~~~~v~r~V~~SS~~vy~~~~~~~~~ 144 (485)
+ +.|++||+++.. .+.++++..+++|+.++..+. ..+++.+..++|++||...+.
T Consensus 78 ~~~~~~g~iD~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~m~~~~~g~Ii~isS~~~~~-------- 149 (263)
T PRK08339 78 KELKNIGEPDIFFFSTGGPKPGYFMEMSMEDWEGAVKLLLYPAVYLTRALVPAMERKGFGRIIYSTSVAIKE-------- 149 (263)
T ss_pred HHHHhhCCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEEcCccccC--------
Confidence 5 489999999832 123456778889977765554 445555667999999976541
Q ss_pred CCCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCC-----------hHHHHHHHHcCCC
Q 047227 145 GNEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLL-----------VPSLVAAARAGKS 210 (485)
Q Consensus 145 ~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~-----------~~~~~~~~~~g~~ 210 (485)
+......|+.+|...+.+.+.++.+ +|+++.++.||.+-.+..... .+.......+.
T Consensus 150 -------~~~~~~~y~asKaal~~l~~~la~el~~~gIrVn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 220 (263)
T PRK08339 150 -------PIPNIALSNVVRISMAGLVRTLAKELGPKGITVNGIMPGIIRTDRVIQLAQDRAKREGKSVEEALQEYAKP-- 220 (263)
T ss_pred -------CCCcchhhHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCcCccHHHHHHHHhhhhccCCCHHHHHHHHhcc--
Confidence 1223457999999999988877643 579999999999865421100 00111111111
Q ss_pred eEEecCCCceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCCCcc
Q 047227 211 KFIIGDGNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMESIK 264 (485)
Q Consensus 211 ~~~~g~g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~~t 264 (485)
.....+..++|+|+++..++.... ....|+.+.+.++...+
T Consensus 221 -------~p~~r~~~p~dva~~v~fL~s~~~------~~itG~~~~vdgG~~~~ 261 (263)
T PRK08339 221 -------IPLGRLGEPEEIGYLVAFLASDLG------SYINGAMIPVDGGRLNS 261 (263)
T ss_pred -------CCcccCcCHHHHHHHHHHHhcchh------cCccCceEEECCCcccc
Confidence 112236678999999988764221 22567888777665443
|
|
| >PRK06947 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.4e-15 Score=143.13 Aligned_cols=218 Identities=19% Similarity=0.164 Sum_probs=139.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhh-cCCCeEEEEecCCCHHHHHHHhc---
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEAL-RSGRAHYVSFDLRHKAQVLQALQ--- 82 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~--- 82 (485)
+|++|||||+|+||..+++.|+++| ++|.+..+....... . ...... ...++.++.+|+.|.+++.++++
T Consensus 2 ~k~ilItGas~giG~~la~~l~~~g-~~v~~~~~~~~~~~~---~--~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 75 (248)
T PRK06947 2 RKVVLITGASRGIGRATAVLAAARG-WSVGINYARDAAAAE---E--TADAVRAAGGRACVVAGDVANEADVIAMFDAVQ 75 (248)
T ss_pred CcEEEEeCCCCcHHHHHHHHHHHCC-CEEEEEeCCCHHHHH---H--HHHHHHhcCCcEEEEEeccCCHHHHHHHHHHHH
Confidence 4789999999999999999999999 577665433211100 0 011111 13468899999999988776653
Q ss_pred ----CCCEEEEcCCCCC--------CCCchhhhHHHHHHHHHHHHHHHHh-cCC------CEEEEecCccccccCCCCcC
Q 047227 83 ----GAEVVFHMAAPNS--------SINNHKLHHSVNVEGTKNVIDACAE-LKV------KRLIYTSSPSVVFDGVHGII 143 (485)
Q Consensus 83 ----~~d~Vih~aa~~~--------~~~~~~~~~~~nv~~t~~ll~a~~~-~~v------~r~V~~SS~~vy~~~~~~~~ 143 (485)
++|+|||+|+... ...+....+++|+.++.++++++.+ ... .++|++||...+...
T Consensus 76 ~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~ii~~sS~~~~~~~----- 150 (248)
T PRK06947 76 SAFGRLDALVNNAGIVAPSMPLADMDAARLRRMFDTNVLGAYLCAREAARRLSTDRGGRGGAIVNVSSIASRLGS----- 150 (248)
T ss_pred HhcCCCCEEEECCccCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCCCcEEEEECchhhcCCC-----
Confidence 4899999999321 1123355689999999888754433 221 369999996554210
Q ss_pred CCCCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCC-ChHHHHHHHHcCCCeEEecCCCc
Q 047227 144 NGNEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRL-LVPSLVAAARAGKSKFIIGDGNN 219 (485)
Q Consensus 144 ~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~-~~~~~~~~~~~g~~~~~~g~g~~ 219 (485)
......|+.+|...+.+.+.++.+ .+++++++|||.+..|.... -.+..........+
T Consensus 151 ---------~~~~~~Y~~sK~~~~~~~~~la~~~~~~~i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~--------- 212 (248)
T PRK06947 151 ---------PNEYVDYAGSKGAVDTLTLGLAKELGPHGVRVNAVRPGLIETEIHASGGQPGRAARLGAQTP--------- 212 (248)
T ss_pred ---------CCCCcccHhhHHHHHHHHHHHHHHhhhhCcEEEEEeccCcccccccccCCHHHHHHHhhcCC---------
Confidence 012246999999999988877654 47999999999998774211 11111111111100
Q ss_pred eeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeC
Q 047227 220 VYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTN 259 (485)
Q Consensus 220 ~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~ 259 (485)
..-...++|+|+.++.++..... ...|+.+.+.+
T Consensus 213 ~~~~~~~e~va~~~~~l~~~~~~------~~~G~~~~~~g 246 (248)
T PRK06947 213 LGRAGEADEVAETIVWLLSDAAS------YVTGALLDVGG 246 (248)
T ss_pred CCCCcCHHHHHHHHHHHcCcccc------CcCCceEeeCC
Confidence 11135689999999987653221 25677666654
|
|
| >PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.5e-15 Score=144.22 Aligned_cols=224 Identities=13% Similarity=0.046 Sum_probs=144.8
Q ss_pred CCCCCCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhh--hcCCCeEEEEecCCCHHHHH
Q 047227 1 MSGEENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEA--LRSGRAHYVSFDLRHKAQVL 78 (485)
Q Consensus 1 M~~~~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~Dl~d~~~l~ 78 (485)
|+...+++++|||||++.||+++++.|+++| ++|.+..+....... . ..... ....++.++.+|++|++++.
T Consensus 2 ~~~~l~~k~vlItGas~gIG~~ia~~l~~~G-~~v~~~~~~~~~~~~---~--~~~~~~~~~~~~~~~~~~D~~~~~~~~ 75 (260)
T PRK08416 2 MSNEMKGKTLVISGGTRGIGKAIVYEFAQSG-VNIAFTYNSNVEEAN---K--IAEDLEQKYGIKAKAYPLNILEPETYK 75 (260)
T ss_pred cccccCCCEEEEeCCCchHHHHHHHHHHHCC-CEEEEEcCCCHHHHH---H--HHHHHHHhcCCceEEEEcCCCCHHHHH
Confidence 4556678999999999999999999999999 588777553221100 0 01111 11346889999999998887
Q ss_pred HHhc-------CCCEEEEcCCCCC-------------CCCchhhhHHHHHHHHHHHHHH----HHhcCCCEEEEecCccc
Q 047227 79 QALQ-------GAEVVFHMAAPNS-------------SINNHKLHHSVNVEGTKNVIDA----CAELKVKRLIYTSSPSV 134 (485)
Q Consensus 79 ~~~~-------~~d~Vih~aa~~~-------------~~~~~~~~~~~nv~~t~~ll~a----~~~~~v~r~V~~SS~~v 134 (485)
++++ ++|++||+|+... ...+....+++|+.+...+.++ +++.+.+++|++||...
T Consensus 76 ~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~ 155 (260)
T PRK08416 76 ELFKKIDEDFDRVDFFISNAIISGRAVVGGYTKFMRLKPKGLNNIYTATVNAFVVGAQEAAKRMEKVGGGSIISLSSTGN 155 (260)
T ss_pred HHHHHHHHhcCCccEEEECccccccccccccCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHhhhccCCEEEEEEecccc
Confidence 7764 4799999997321 1123445677787776655444 44444568999999643
Q ss_pred cccCCCCcCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCC--hHHHHHHHHcCC
Q 047227 135 VFDGVHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLL--VPSLVAAARAGK 209 (485)
Q Consensus 135 y~~~~~~~~~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~--~~~~~~~~~~g~ 209 (485)
.. +......|+.+|+..+.+.+.++.+ +|+++.++.||.+-.+....+ ............
T Consensus 156 ~~---------------~~~~~~~Y~asK~a~~~~~~~la~el~~~gi~v~~v~PG~i~T~~~~~~~~~~~~~~~~~~~~ 220 (260)
T PRK08416 156 LV---------------YIENYAGHGTSKAAVETMVKYAATELGEKNIRVNAVSGGPIDTDALKAFTNYEEVKAKTEELS 220 (260)
T ss_pred cc---------------CCCCcccchhhHHHHHHHHHHHHHHhhhhCeEEEEEeeCcccChhhhhccCCHHHHHHHHhcC
Confidence 21 1123457999999999999888765 489999999998754421110 011111111111
Q ss_pred CeEEecCCCceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCC
Q 047227 210 SKFIIGDGNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNM 260 (485)
Q Consensus 210 ~~~~~g~g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~ 260 (485)
+ ...+..++|+|.+++.++.... .-..|+.+.+.++
T Consensus 221 ~---------~~r~~~p~~va~~~~~l~~~~~------~~~~G~~i~vdgg 256 (260)
T PRK08416 221 P---------LNRMGQPEDLAGACLFLCSEKA------SWLTGQTIVVDGG 256 (260)
T ss_pred C---------CCCCCCHHHHHHHHHHHcChhh------hcccCcEEEEcCC
Confidence 1 1236679999999998864211 1256777777654
|
|
| >PRK05693 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=2e-15 Score=146.06 Aligned_cols=159 Identities=19% Similarity=0.178 Sum_probs=121.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc----
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ---- 82 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~---- 82 (485)
||++|||||+|+||+++++.|.++| ++|++++|..... ..+...++.++.+|+.|.+++.++++
T Consensus 1 mk~vlItGasggiG~~la~~l~~~G-~~V~~~~r~~~~~-----------~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 68 (274)
T PRK05693 1 MPVVLITGCSSGIGRALADAFKAAG-YEVWATARKAEDV-----------EALAAAGFTAVQLDVNDGAALARLAEELEA 68 (274)
T ss_pred CCEEEEecCCChHHHHHHHHHHHCC-CEEEEEeCCHHHH-----------HHHHHCCCeEEEeeCCCHHHHHHHHHHHHH
Confidence 3689999999999999999999999 6899988764311 11122357889999999988877663
Q ss_pred ---CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHHHhc---CCCEEEEecCccccccCCCCcCCCCCCC
Q 047227 83 ---GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDACAEL---KVKRLIYTSSPSVVFDGVHGIINGNEAL 149 (485)
Q Consensus 83 ---~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~~~~---~v~r~V~~SS~~vy~~~~~~~~~~~e~~ 149 (485)
++|+|||+||... ..++++..+++|+.++.++++++... +..++|++||...+.
T Consensus 69 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~------------- 135 (274)
T PRK05693 69 EHGGLDVLINNAGYGAMGPLLDGGVEAMRRQFETNVFAVVGVTRALFPLLRRSRGLVVNIGSVSGVL------------- 135 (274)
T ss_pred hcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCEEEEECCccccC-------------
Confidence 4899999999321 22356678899999999998887432 346899999865432
Q ss_pred CCCCCCCchHHHHHHHHHHHHHHHhC---CCCceEEEEecCCcccC
Q 047227 150 PYPPKHNDFYSATKAEGEALVIKANG---TNGLLTCCIRPSSIFGP 192 (485)
Q Consensus 150 ~~~~~~~~~Y~~sK~~~E~~~~~~~~---~~g~~~~ilRp~~v~Gp 192 (485)
+......|+.+|...+.+.+.++. .+|+++++++||.+..+
T Consensus 136 --~~~~~~~Y~~sK~al~~~~~~l~~e~~~~gi~v~~v~pg~v~t~ 179 (274)
T PRK05693 136 --VTPFAGAYCASKAAVHALSDALRLELAPFGVQVMEVQPGAIASQ 179 (274)
T ss_pred --CCCCccHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEecCccccc
Confidence 112346799999999998877654 36899999999999765
|
|
| >PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.9e-15 Score=142.96 Aligned_cols=218 Identities=12% Similarity=0.066 Sum_probs=148.2
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc--
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ-- 82 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 82 (485)
.++|++|||||+|.||+++++.|.++| ++|.+++|..... ....... ...++.++.+|++|.+++.++++
T Consensus 6 l~~k~~lItGas~gIG~aia~~l~~~G-~~vv~~~~~~~~~-----~~~~~~~--~~~~~~~~~~Dl~~~~~~~~~~~~~ 77 (251)
T PRK12481 6 LNGKVAIITGCNTGLGQGMAIGLAKAG-ADIVGVGVAEAPE-----TQAQVEA--LGRKFHFITADLIQQKDIDSIVSQA 77 (251)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCC-CEEEEecCchHHH-----HHHHHHH--cCCeEEEEEeCCCCHHHHHHHHHHH
Confidence 356899999999999999999999999 6888877643210 0000111 13468889999999998887775
Q ss_pred -----CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHHHh----cC-CCEEEEecCccccccCCCCcCCC
Q 047227 83 -----GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDACAE----LK-VKRLIYTSSPSVVFDGVHGIING 145 (485)
Q Consensus 83 -----~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~~~----~~-v~r~V~~SS~~vy~~~~~~~~~~ 145 (485)
+.|++||+||... +.++++..+++|+.++..+.+++.. .+ -.++|++||...+..
T Consensus 78 ~~~~g~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~~~~g~ii~isS~~~~~~-------- 149 (251)
T PRK12481 78 VEVMGHIDILINNAGIIRRQDLLEFGNKDWDDVININQKTVFFLSQAVAKQFVKQGNGGKIINIASMLSFQG-------- 149 (251)
T ss_pred HHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHheeCcHHHHHHHHHHHHHHHHcCCCCEEEEeCChhhcCC--------
Confidence 4899999999321 2345677899999999888877653 23 358999999776531
Q ss_pred CCCCCCCCCCCchHHHHHHHHHHHHHHHhC---CCCceEEEEecCCcccCCCCCCh--HHHHHHHHcCCCeEEecCCCce
Q 047227 146 NEALPYPPKHNDFYSATKAEGEALVIKANG---TNGLLTCCIRPSSIFGPGDRLLV--PSLVAAARAGKSKFIIGDGNNV 220 (485)
Q Consensus 146 ~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~---~~g~~~~ilRp~~v~Gp~~~~~~--~~~~~~~~~g~~~~~~g~g~~~ 220 (485)
......|+.+|...+.+.+.++. .+|+++.+++||.+-.+...... ........... ..
T Consensus 150 -------~~~~~~Y~asK~a~~~l~~~la~e~~~~girvn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~---------p~ 213 (251)
T PRK12481 150 -------GIRVPSYTASKSAVMGLTRALATELSQYNINVNAIAPGYMATDNTAALRADTARNEAILERI---------PA 213 (251)
T ss_pred -------CCCCcchHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCCccCchhhcccChHHHHHHHhcC---------CC
Confidence 12235799999999999887765 36899999999998655321110 11111111111 11
Q ss_pred eecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCC
Q 047227 221 YDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNM 260 (485)
Q Consensus 221 ~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~ 260 (485)
..+...+|+|+++..++.... ....|+.+.+.++
T Consensus 214 ~~~~~peeva~~~~~L~s~~~------~~~~G~~i~vdgg 247 (251)
T PRK12481 214 SRWGTPDDLAGPAIFLSSSAS------DYVTGYTLAVDGG 247 (251)
T ss_pred CCCcCHHHHHHHHHHHhCccc------cCcCCceEEECCC
Confidence 235678999999998864211 2256777766554
|
|
| >PRK07677 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.8e-15 Score=141.53 Aligned_cols=217 Identities=16% Similarity=0.103 Sum_probs=147.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhh--cCCCeEEEEecCCCHHHHHHHhc--
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEAL--RSGRAHYVSFDLRHKAQVLQALQ-- 82 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~Dl~d~~~l~~~~~-- 82 (485)
+|++|||||+|.||+++++.|.++| +.|.+++|+...... ....+ ...++.++.+|++|++++.++++
T Consensus 1 ~k~~lItG~s~giG~~ia~~l~~~G-~~Vi~~~r~~~~~~~-------~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 72 (252)
T PRK07677 1 EKVVIITGGSSGMGKAMAKRFAEEG-ANVVITGRTKEKLEE-------AKLEIEQFPGQVLTVQMDVRNPEDVQKMVEQI 72 (252)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCC-CEEEEEeCCHHHHHH-------HHHHHHhcCCcEEEEEecCCCHHHHHHHHHHH
Confidence 4789999999999999999999999 589998886431110 11111 12468899999999988877664
Q ss_pred -----CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHHHh----cC-CCEEEEecCccccccCCCCcCCC
Q 047227 83 -----GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDACAE----LK-VKRLIYTSSPSVVFDGVHGIING 145 (485)
Q Consensus 83 -----~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~~~----~~-v~r~V~~SS~~vy~~~~~~~~~~ 145 (485)
+.|+|||+++... +.+++...+++|+.++.++++++.+ .+ ..++|++||...+.
T Consensus 73 ~~~~~~id~lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~ii~isS~~~~~--------- 143 (252)
T PRK07677 73 DEKFGRIDALINNAAGNFICPAEDLSVNGWNSVIDIVLNGTFYCSQAVGKYWIEKGIKGNIINMVATYAWD--------- 143 (252)
T ss_pred HHHhCCccEEEECCCCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCCEEEEEEcChhhcc---------
Confidence 4799999998321 2234567899999999999999853 22 35899999864321
Q ss_pred CCCCCCCCCCCchHHHHHHHHHHHHHHHhC----CCCceEEEEecCCcccCCCC-CC--hHHHHHHHHcCCCeEEecCCC
Q 047227 146 NEALPYPPKHNDFYSATKAEGEALVIKANG----TNGLLTCCIRPSSIFGPGDR-LL--VPSLVAAARAGKSKFIIGDGN 218 (485)
Q Consensus 146 ~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~----~~g~~~~ilRp~~v~Gp~~~-~~--~~~~~~~~~~g~~~~~~g~g~ 218 (485)
+......|+.+|...+.+.+.++. .+|+++..++||.+.++... .. -+...+.+.+..+
T Consensus 144 ------~~~~~~~Y~~sKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~~~~~~~~~~~~~~~~~~~~~~~~-------- 209 (252)
T PRK07677 144 ------AGPGVIHSAAAKAGVLAMTRTLAVEWGRKYGIRVNAIAPGPIERTGGADKLWESEEAAKRTIQSVP-------- 209 (252)
T ss_pred ------CCCCCcchHHHHHHHHHHHHHHHHHhCcccCeEEEEEeecccccccccccccCCHHHHHHHhccCC--------
Confidence 112345799999999998887543 35899999999999854211 11 1222222322211
Q ss_pred ceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCC
Q 047227 219 NVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNME 261 (485)
Q Consensus 219 ~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~ 261 (485)
...+...+|+|+++..++... .....|+.+.+.++.
T Consensus 210 -~~~~~~~~~va~~~~~l~~~~------~~~~~g~~~~~~gg~ 245 (252)
T PRK07677 210 -LGRLGTPEEIAGLAYFLLSDE------AAYINGTCITMDGGQ 245 (252)
T ss_pred -CCCCCCHHHHHHHHHHHcCcc------ccccCCCEEEECCCe
Confidence 123667899999888765421 112567777776653
|
|
| >PRK06139 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=5.9e-15 Score=146.10 Aligned_cols=203 Identities=17% Similarity=0.095 Sum_probs=141.0
Q ss_pred CCCCCCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhh--cCCCeEEEEecCCCHHHHH
Q 047227 1 MSGEENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEAL--RSGRAHYVSFDLRHKAQVL 78 (485)
Q Consensus 1 M~~~~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~Dl~d~~~l~ 78 (485)
|+....++++|||||+|.||+++++.|.++| ++|.+++|+...... ....+ ...++.++.+|++|++++.
T Consensus 1 ~~~~l~~k~vlITGAs~GIG~aia~~la~~G-~~Vvl~~R~~~~l~~-------~~~~~~~~g~~~~~~~~Dv~d~~~v~ 72 (330)
T PRK06139 1 MMGPLHGAVVVITGASSGIGQATAEAFARRG-ARLVLAARDEEALQA-------VAEECRALGAEVLVVPTDVTDADQVK 72 (330)
T ss_pred CCcCCCCCEEEEcCCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHH-------HHHHHHhcCCcEEEEEeeCCCHHHHH
Confidence 5555667899999999999999999999999 689998886432111 11111 1346778899999999888
Q ss_pred HHhc-------CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHH----HhcCCCEEEEecCccccccCCC
Q 047227 79 QALQ-------GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDAC----AELKVKRLIYTSSPSVVFDGVH 140 (485)
Q Consensus 79 ~~~~-------~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~----~~~~v~r~V~~SS~~vy~~~~~ 140 (485)
++++ ++|++||+|+... ..++.+..+++|+.++.++.+++ ++.+..++|++||...+.
T Consensus 73 ~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~~~~~~~g~iV~isS~~~~~---- 148 (330)
T PRK06139 73 ALATQAASFGGRIDVWVNNVGVGAVGRFEETPIEAHEQVIQTNLIGYMRDAHAALPIFKKQGHGIFINMISLGGFA---- 148 (330)
T ss_pred HHHHHHHHhcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCEEEEEcChhhcC----
Confidence 8763 4899999999321 12344567999999998887775 344556899999976552
Q ss_pred CcCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHh----CCCCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecC
Q 047227 141 GIINGNEALPYPPKHNDFYSATKAEGEALVIKAN----GTNGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGD 216 (485)
Q Consensus 141 ~~~~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~----~~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~ 216 (485)
+......|+.+|...+.+.+.++ ...+++++++.|+.+..|....... ..+..
T Consensus 149 -----------~~p~~~~Y~asKaal~~~~~sL~~El~~~~gI~V~~v~Pg~v~T~~~~~~~~------~~~~~------ 205 (330)
T PRK06139 149 -----------AQPYAAAYSASKFGLRGFSEALRGELADHPDIHVCDVYPAFMDTPGFRHGAN------YTGRR------ 205 (330)
T ss_pred -----------CCCCchhHHHHHHHHHHHHHHHHHHhCCCCCeEEEEEecCCccCcccccccc------ccccc------
Confidence 11234689999997666655543 2248999999999998875321100 01110
Q ss_pred CCceeecccHHHHHHHHHHHHH
Q 047227 217 GNNVYDFTYVANVAHAHICAER 238 (485)
Q Consensus 217 g~~~~~~i~v~D~a~a~~~~~~ 238 (485)
.........++|+|++++.+++
T Consensus 206 ~~~~~~~~~pe~vA~~il~~~~ 227 (330)
T PRK06139 206 LTPPPPVYDPRRVAKAVVRLAD 227 (330)
T ss_pred ccCCCCCCCHHHHHHHHHHHHh
Confidence 0112346789999999998876
|
|
| >PRK08936 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=7.4e-15 Score=140.98 Aligned_cols=223 Identities=18% Similarity=0.125 Sum_probs=147.1
Q ss_pred CCCCCCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhh--cCCCeEEEEecCCCHHHHH
Q 047227 1 MSGEENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEAL--RSGRAHYVSFDLRHKAQVL 78 (485)
Q Consensus 1 M~~~~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~Dl~d~~~l~ 78 (485)
|....+++++|||||+|.||+++++.|.++| +.|.+..|....... ...+.+ ...++.++.+|++|.+++.
T Consensus 1 ~~~~~~~k~~lItGa~~gIG~~ia~~l~~~G-~~vvi~~~~~~~~~~------~~~~~l~~~~~~~~~~~~Dl~~~~~i~ 73 (261)
T PRK08936 1 MYSDLEGKVVVITGGSTGLGRAMAVRFGKEK-AKVVINYRSDEEEAN------DVAEEIKKAGGEAIAVKGDVTVESDVV 73 (261)
T ss_pred CccCCCCCEEEEeCCCChHHHHHHHHHHHCC-CEEEEEeCCCHHHHH------HHHHHHHHcCCeEEEEEecCCCHHHHH
Confidence 6666778999999999999999999999999 577777664321100 011111 1345778999999999887
Q ss_pred HHhc-------CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHH----HHHHhcC-CCEEEEecCccccccCC
Q 047227 79 QALQ-------GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVI----DACAELK-VKRLIYTSSPSVVFDGV 139 (485)
Q Consensus 79 ~~~~-------~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll----~a~~~~~-v~r~V~~SS~~vy~~~~ 139 (485)
++++ ++|++||+|+... ..++++..+++|+.++..+. ..+++.+ -.++|++||...+.
T Consensus 74 ~~~~~~~~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~~~~g~iv~~sS~~~~~--- 150 (261)
T PRK08936 74 NLIQTAVKEFGTLDVMINNAGIENAVPSHEMSLEDWNKVINTNLTGAFLGSREAIKYFVEHDIKGNIINMSSVHEQI--- 150 (261)
T ss_pred HHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEccccccC---
Confidence 7664 4799999999321 11345567899988876554 4455554 36899999954331
Q ss_pred CCcCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhC---CCCceEEEEecCCcccCCCCCC--hHHHHHHHHcCCCeEEe
Q 047227 140 HGIINGNEALPYPPKHNDFYSATKAEGEALVIKANG---TNGLLTCCIRPSSIFGPGDRLL--VPSLVAAARAGKSKFII 214 (485)
Q Consensus 140 ~~~~~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~---~~g~~~~ilRp~~v~Gp~~~~~--~~~~~~~~~~g~~~~~~ 214 (485)
+..+...|+.+|...+.+.+.++. ..|+++++++|+.+..+..... -+..........
T Consensus 151 ------------~~~~~~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~----- 213 (261)
T PRK08936 151 ------------PWPLFVHYAASKGGVKLMTETLAMEYAPKGIRVNNIGPGAINTPINAEKFADPKQRADVESMI----- 213 (261)
T ss_pred ------------CCCCCcccHHHHHHHHHHHHHHHHHHhhcCeEEEEEEECcCCCCccccccCCHHHHHHHHhcC-----
Confidence 234556899999888877776643 3589999999999987753211 122222222111
Q ss_pred cCCCceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCC
Q 047227 215 GDGNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNM 260 (485)
Q Consensus 215 g~g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~ 260 (485)
....+...+|+++++..++.... ....|..+.+.++
T Consensus 214 ----~~~~~~~~~~va~~~~~l~s~~~------~~~~G~~i~~d~g 249 (261)
T PRK08936 214 ----PMGYIGKPEEIAAVAAWLASSEA------SYVTGITLFADGG 249 (261)
T ss_pred ----CCCCCcCHHHHHHHHHHHcCccc------CCccCcEEEECCC
Confidence 11246678999999888765211 2255666666554
|
|
| >PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=7.3e-15 Score=141.39 Aligned_cols=213 Identities=15% Similarity=0.076 Sum_probs=146.9
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc--
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ-- 82 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 82 (485)
.+++++|||||+|+||+++++.|.++| ++|.+.++..... ...++.++.+|++|++++.++++
T Consensus 7 l~~k~vlItG~s~gIG~~la~~l~~~G-~~v~~~~~~~~~~--------------~~~~~~~~~~D~~~~~~~~~~~~~~ 71 (266)
T PRK06171 7 LQGKIIIVTGGSSGIGLAIVKELLANG-ANVVNADIHGGDG--------------QHENYQFVPTDVSSAEEVNHTVAEI 71 (266)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCC-CEEEEEeCCcccc--------------ccCceEEEEccCCCHHHHHHHHHHH
Confidence 456899999999999999999999999 5888888764311 12367889999999998887764
Q ss_pred -----CCCEEEEcCCCCC----------------CCCchhhhHHHHHHHHHHHHHHHHhc----CCCEEEEecCcccccc
Q 047227 83 -----GAEVVFHMAAPNS----------------SINNHKLHHSVNVEGTKNVIDACAEL----KVKRLIYTSSPSVVFD 137 (485)
Q Consensus 83 -----~~d~Vih~aa~~~----------------~~~~~~~~~~~nv~~t~~ll~a~~~~----~v~r~V~~SS~~vy~~ 137 (485)
.+|+|||+|+... ..++++..+++|+.++.++++++... +..++|++||...+.
T Consensus 72 ~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~- 150 (266)
T PRK06171 72 IEKFGRIDGLVNNAGINIPRLLVDEKDPAGKYELNEAAFDKMFNINQKGVFLMSQAVARQMVKQHDGVIVNMSSEAGLE- 150 (266)
T ss_pred HHHcCCCCEEEECCcccCCccccccccccccccCCHHHHHHHHhhhchhHHHHHHHHHHHHHhcCCcEEEEEccccccC-
Confidence 4799999999321 12244568899999999999887753 345899999976542
Q ss_pred CCCCcCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCccc-CCCCCCh------------HHH
Q 047227 138 GVHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFG-PGDRLLV------------PSL 201 (485)
Q Consensus 138 ~~~~~~~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G-p~~~~~~------------~~~ 201 (485)
+......|+.+|...+.+++.++.+ .|+++.+++||.+-. +...... ..+
T Consensus 151 --------------~~~~~~~Y~~sK~a~~~l~~~la~e~~~~gi~v~~v~pG~~~~t~~~~~~~~~~~~~~~~~~~~~~ 216 (266)
T PRK06171 151 --------------GSEGQSCYAATKAALNSFTRSWAKELGKHNIRVVGVAPGILEATGLRTPEYEEALAYTRGITVEQL 216 (266)
T ss_pred --------------CCCCCchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeccccccCCCcChhhhhhhccccCCCHHHH
Confidence 1234568999999999998887654 589999999998742 2111000 111
Q ss_pred HHHHHcCCCeEEecCCCceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCC
Q 047227 202 VAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNM 260 (485)
Q Consensus 202 ~~~~~~g~~~~~~g~g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~ 260 (485)
.....+.. ......+...+|+|.++..++.... .-..|+..++.++
T Consensus 217 ~~~~~~~~-------~~p~~r~~~~~eva~~~~fl~s~~~------~~itG~~i~vdgg 262 (266)
T PRK06171 217 RAGYTKTS-------TIPLGRSGKLSEVADLVCYLLSDRA------SYITGVTTNIAGG 262 (266)
T ss_pred Hhhhcccc-------cccCCCCCCHHHhhhheeeeecccc------ccceeeEEEecCc
Confidence 11111100 1112346678999999887754211 1256777777654
|
|
| >PRK07023 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.3e-15 Score=144.62 Aligned_cols=160 Identities=19% Similarity=0.104 Sum_probs=120.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc----
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ---- 82 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~---- 82 (485)
||++|||||+|+||++++++|+++| ++|.+++|+..... . .....++.++.+|+.|.+++.++++
T Consensus 1 ~~~vlItGasggiG~~ia~~l~~~G-~~v~~~~r~~~~~~---------~-~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 69 (243)
T PRK07023 1 AVRAIVTGHSRGLGAALAEQLLQPG-IAVLGVARSRHPSL---------A-AAAGERLAEVELDLSDAAAAAAWLAGDLL 69 (243)
T ss_pred CceEEEecCCcchHHHHHHHHHhCC-CEEEEEecCcchhh---------h-hccCCeEEEEEeccCCHHHHHHHHHHHHH
Confidence 4689999999999999999999999 58888887643211 0 0113468899999999988877432
Q ss_pred -------CCCEEEEcCCCCC--------CCCchhhhHHHHHHHHHHHHHHHH----hcCCCEEEEecCccccccCCCCcC
Q 047227 83 -------GAEVVFHMAAPNS--------SINNHKLHHSVNVEGTKNVIDACA----ELKVKRLIYTSSPSVVFDGVHGII 143 (485)
Q Consensus 83 -------~~d~Vih~aa~~~--------~~~~~~~~~~~nv~~t~~ll~a~~----~~~v~r~V~~SS~~vy~~~~~~~~ 143 (485)
..|.+||+++... ..+++...+++|+.++..+.+.+. +.+.+++|++||...+.
T Consensus 70 ~~~~~~~~~~~~v~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~------- 142 (243)
T PRK07023 70 AAFVDGASRVLLINNAGTVEPIGPLATLDAAAIARAVGLNVAAPLMLTAALAQAASDAAERRILHISSGAARN------- 142 (243)
T ss_pred HHhccCCCceEEEEcCcccCCCCccccCCHHHHHHHeeeeehHHHHHHHHHHHHhhccCCCEEEEEeChhhcC-------
Confidence 3789999998322 123456778999999666655544 34457999999976652
Q ss_pred CCCCCCCCCCCCCchHHHHHHHHHHHHHHHhCC--CCceEEEEecCCcccC
Q 047227 144 NGNEALPYPPKHNDFYSATKAEGEALVIKANGT--NGLLTCCIRPSSIFGP 192 (485)
Q Consensus 144 ~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~--~g~~~~ilRp~~v~Gp 192 (485)
+..+...|+.+|...|.+++.++.+ .++++.+++|+.+-.+
T Consensus 143 --------~~~~~~~Y~~sK~a~~~~~~~~~~~~~~~i~v~~v~pg~~~t~ 185 (243)
T PRK07023 143 --------AYAGWSVYCATKAALDHHARAVALDANRALRIVSLAPGVVDTG 185 (243)
T ss_pred --------CCCCchHHHHHHHHHHHHHHHHHhcCCCCcEEEEecCCccccH
Confidence 2345678999999999999987743 5899999999987543
|
|
| >PRK06483 dihydromonapterin reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.2e-14 Score=137.42 Aligned_cols=210 Identities=14% Similarity=0.037 Sum_probs=144.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc----
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ---- 82 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~---- 82 (485)
+|++|||||+|.||+++++.|.++| ++|.+++|..... ...+...++.++.+|+.|.+++.++++
T Consensus 2 ~k~vlItGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~----------~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 70 (236)
T PRK06483 2 PAPILITGAGQRIGLALAWHLLAQG-QPVIVSYRTHYPA----------IDGLRQAGAQCIQADFSTNAGIMAFIDELKQ 70 (236)
T ss_pred CceEEEECCCChHHHHHHHHHHHCC-CeEEEEeCCchhH----------HHHHHHcCCEEEEcCCCCHHHHHHHHHHHHh
Confidence 4789999999999999999999999 6999988864311 111122357889999999988776653
Q ss_pred ---CCCEEEEcCCCC--C-----CCCchhhhHHHHHHHHHHHHHHHHh----cC--CCEEEEecCccccccCCCCcCCCC
Q 047227 83 ---GAEVVFHMAAPN--S-----SINNHKLHHSVNVEGTKNVIDACAE----LK--VKRLIYTSSPSVVFDGVHGIINGN 146 (485)
Q Consensus 83 ---~~d~Vih~aa~~--~-----~~~~~~~~~~~nv~~t~~ll~a~~~----~~--v~r~V~~SS~~vy~~~~~~~~~~~ 146 (485)
+.|++||+|+.. . ..++.+..+++|+.++..+.+++.. .+ ..++|++||.....
T Consensus 71 ~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~~~g~iv~~ss~~~~~---------- 140 (236)
T PRK06483 71 HTDGLRAIIHNASDWLAEKPGAPLADVLARMMQIHVNAPYLLNLALEDLLRGHGHAASDIIHITDYVVEK---------- 140 (236)
T ss_pred hCCCccEEEECCccccCCCcCccCHHHHHHHHHHcchHHHHHHHHHHHHHHhCCCCCceEEEEcchhhcc----------
Confidence 389999999832 1 1234567889999998877666554 23 35899999854321
Q ss_pred CCCCCCCCCCchHHHHHHHHHHHHHHHhCCC--CceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCceeecc
Q 047227 147 EALPYPPKHNDFYSATKAEGEALVIKANGTN--GLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFT 224 (485)
Q Consensus 147 e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~--g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i 224 (485)
+......|+.+|...|.+++.++.+. ++++.+++|+.+.-+.... ...........+. .-+.
T Consensus 141 -----~~~~~~~Y~asKaal~~l~~~~a~e~~~~irvn~v~Pg~~~~~~~~~--~~~~~~~~~~~~~---------~~~~ 204 (236)
T PRK06483 141 -----GSDKHIAYAASKAALDNMTLSFAAKLAPEVKVNSIAPALILFNEGDD--AAYRQKALAKSLL---------KIEP 204 (236)
T ss_pred -----CCCCCccHHHHHHHHHHHHHHHHHHHCCCcEEEEEccCceecCCCCC--HHHHHHHhccCcc---------ccCC
Confidence 12234679999999999999887653 5999999999874322111 1222222222111 1134
Q ss_pred cHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCC
Q 047227 225 YVANVAHAHICAERALASEVTVAEKAAGQAYFVTNME 261 (485)
Q Consensus 225 ~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~ 261 (485)
..+|+|+++..++. ..-..|+.+.+.++.
T Consensus 205 ~~~~va~~~~~l~~--------~~~~~G~~i~vdgg~ 233 (236)
T PRK06483 205 GEEEIIDLVDYLLT--------SCYVTGRSLPVDGGR 233 (236)
T ss_pred CHHHHHHHHHHHhc--------CCCcCCcEEEeCccc
Confidence 58999999998875 223678888876653
|
|
| >PRK08589 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.5e-14 Score=139.72 Aligned_cols=221 Identities=17% Similarity=0.121 Sum_probs=146.5
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhh-cCCCeEEEEecCCCHHHHHHHhc-
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEAL-RSGRAHYVSFDLRHKAQVLQALQ- 82 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~- 82 (485)
.++|++|||||+|.||+++++.|+++| ++|.+++|. ..... ...... ...++..+.+|++|++++.++++
T Consensus 4 l~~k~vlItGas~gIG~aia~~l~~~G-~~vi~~~r~-~~~~~------~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 75 (272)
T PRK08589 4 LENKVAVITGASTGIGQASAIALAQEG-AYVLAVDIA-EAVSE------TVDKIKSNGGKAKAYHVDISDEQQVKDFASE 75 (272)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEeCc-HHHHH------HHHHHHhcCCeEEEEEeecCCHHHHHHHHHH
Confidence 457899999999999999999999999 699998876 21100 011111 12468899999999988877664
Q ss_pred ------CCCEEEEcCCCCC--------CCCchhhhHHHHHHHHHHHHHHHH----hcCCCEEEEecCccccccCCCCcCC
Q 047227 83 ------GAEVVFHMAAPNS--------SINNHKLHHSVNVEGTKNVIDACA----ELKVKRLIYTSSPSVVFDGVHGIIN 144 (485)
Q Consensus 83 ------~~d~Vih~aa~~~--------~~~~~~~~~~~nv~~t~~ll~a~~----~~~v~r~V~~SS~~vy~~~~~~~~~ 144 (485)
+.|++||+|+... ..+..+..+++|+.++..+.+++. +.+ .++|++||...+.
T Consensus 76 ~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-g~iv~isS~~~~~-------- 146 (272)
T PRK08589 76 IKEQFGRVDVLFNNAGVDNAAGRIHEYPVDVFDKIMAVDMRGTFLMTKMLLPLMMEQG-GSIINTSSFSGQA-------- 146 (272)
T ss_pred HHHHcCCcCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CEEEEeCchhhcC--------
Confidence 3799999999321 112345677889998877766644 334 6899999976652
Q ss_pred CCCCCCCCCCCCchHHHHHHHHHHHHHHHhC---CCCceEEEEecCCcccCCCCCCh---H-HHHHHHHcCCCeEEecCC
Q 047227 145 GNEALPYPPKHNDFYSATKAEGEALVIKANG---TNGLLTCCIRPSSIFGPGDRLLV---P-SLVAAARAGKSKFIIGDG 217 (485)
Q Consensus 145 ~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~---~~g~~~~ilRp~~v~Gp~~~~~~---~-~~~~~~~~g~~~~~~g~g 217 (485)
+......|+.+|+..+.+++.++. ..|+++.++.||.+..+...... . .+......... . .
T Consensus 147 -------~~~~~~~Y~asKaal~~l~~~la~e~~~~gI~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~-~----~ 214 (272)
T PRK08589 147 -------ADLYRSGYNAAKGAVINFTKSIAIEYGRDGIRANAIAPGTIETPLVDKLTGTSEDEAGKTFRENQK-W----M 214 (272)
T ss_pred -------CCCCCchHHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCcccCchhhhhcccchhhHHHHHhhhhh-c----c
Confidence 122346799999999999988764 35799999999998765321110 0 00000110000 0 0
Q ss_pred CceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCC
Q 047227 218 NNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNM 260 (485)
Q Consensus 218 ~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~ 260 (485)
.....+..++|+|+++..++.... ....|+.+.+.++
T Consensus 215 ~~~~~~~~~~~va~~~~~l~s~~~------~~~~G~~i~vdgg 251 (272)
T PRK08589 215 TPLGRLGKPEEVAKLVVFLASDDS------SFITGETIRIDGG 251 (272)
T ss_pred CCCCCCcCHHHHHHHHHHHcCchh------cCcCCCEEEECCC
Confidence 011235679999999988764221 2256778877665
|
|
| >PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.66 E-value=7.8e-15 Score=140.18 Aligned_cols=217 Identities=12% Similarity=0.051 Sum_probs=148.3
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhh-cCCCeEEEEecCCCHHHHHHHhc-
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEAL-RSGRAHYVSFDLRHKAQVLQALQ- 82 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~- 82 (485)
..++++|||||+|.||.++++.|.++| ++|.+.++.... +. ..... ...++..+.+|+.|.+++.++++
T Consensus 8 l~~k~~lItG~~~gIG~a~a~~l~~~G-~~vv~~~~~~~~-----~~---~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 78 (253)
T PRK08993 8 LEGKVAVVTGCDTGLGQGMALGLAEAG-CDIVGINIVEPT-----ET---IEQVTALGRRFLSLTADLRKIDGIPALLER 78 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCC-CEEEEecCcchH-----HH---HHHHHhcCCeEEEEECCCCCHHHHHHHHHH
Confidence 456899999999999999999999999 688877664321 00 11111 13467889999999988887775
Q ss_pred ------CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHHHhc----C-CCEEEEecCccccccCCCCcCC
Q 047227 83 ------GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDACAEL----K-VKRLIYTSSPSVVFDGVHGIIN 144 (485)
Q Consensus 83 ------~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~~~~----~-v~r~V~~SS~~vy~~~~~~~~~ 144 (485)
+.|++||+||... ..++++..+++|+.++.++.+++... + -.++|++||...+..
T Consensus 79 ~~~~~~~~D~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~------- 151 (253)
T PRK08993 79 AVAEFGHIDILVNNAGLIRREDAIEFSEKDWDDVMNLNIKSVFFMSQAAAKHFIAQGNGGKIINIASMLSFQG------- 151 (253)
T ss_pred HHHHhCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEECchhhccC-------
Confidence 4899999999321 22467788999999999998887542 2 258999999776531
Q ss_pred CCCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCCh--HHHHHHHHcCCCeEEecCCCc
Q 047227 145 GNEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLLV--PSLVAAARAGKSKFIIGDGNN 219 (485)
Q Consensus 145 ~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~~--~~~~~~~~~g~~~~~~g~g~~ 219 (485)
......|+.+|...|.+.+.++.+ .|+++..++||.+-.+...... ......+.+. + +
T Consensus 152 --------~~~~~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~pG~v~T~~~~~~~~~~~~~~~~~~~--~--p----- 214 (253)
T PRK08993 152 --------GIRVPSYTASKSGVMGVTRLMANEWAKHNINVNAIAPGYMATNNTQQLRADEQRSAEILDR--I--P----- 214 (253)
T ss_pred --------CCCCcchHHHHHHHHHHHHHHHHHhhhhCeEEEEEeeCcccCcchhhhccchHHHHHHHhc--C--C-----
Confidence 122347999999999998887654 5899999999999765322110 1111111111 1 0
Q ss_pred eeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCC
Q 047227 220 VYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNM 260 (485)
Q Consensus 220 ~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~ 260 (485)
..-+.-.+|+|+.++.++..... ...|+.+.+.++
T Consensus 215 ~~r~~~p~eva~~~~~l~s~~~~------~~~G~~~~~dgg 249 (253)
T PRK08993 215 AGRWGLPSDLMGPVVFLASSASD------YINGYTIAVDGG 249 (253)
T ss_pred CCCCcCHHHHHHHHHHHhCcccc------CccCcEEEECCC
Confidence 12366789999999988652222 256777666543
|
|
| >PRK07904 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=7.8e-15 Score=140.13 Aligned_cols=194 Identities=14% Similarity=0.114 Sum_probs=134.5
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhh--cCCCeEEEEecCCCHHHHHHHhc
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEAL--RSGRAHYVSFDLRHKAQVLQALQ 82 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~Dl~d~~~l~~~~~ 82 (485)
..+++||||||+|.||.+++++|+++|.++|.+++|+...... + ...+.. ...+++++.+|+.|.+++.++++
T Consensus 6 ~~~~~vlItGas~giG~~la~~l~~~gg~~V~~~~r~~~~~~~---~--~~~~l~~~~~~~v~~~~~D~~~~~~~~~~~~ 80 (253)
T PRK07904 6 GNPQTILLLGGTSEIGLAICERYLKNAPARVVLAALPDDPRRD---A--AVAQMKAAGASSVEVIDFDALDTDSHPKVID 80 (253)
T ss_pred CCCcEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeCCcchhHH---H--HHHHHHhcCCCceEEEEecCCChHHHHHHHH
Confidence 4568999999999999999999999954689999887542110 0 011111 12368999999999887655543
Q ss_pred ------CCCEEEEcCCCCCC----CCch---hhhHHHHHHHHHH----HHHHHHhcCCCEEEEecCccccccCCCCcCCC
Q 047227 83 ------GAEVVFHMAAPNSS----INNH---KLHHSVNVEGTKN----VIDACAELKVKRLIYTSSPSVVFDGVHGIING 145 (485)
Q Consensus 83 ------~~d~Vih~aa~~~~----~~~~---~~~~~~nv~~t~~----ll~a~~~~~v~r~V~~SS~~vy~~~~~~~~~~ 145 (485)
+.|++||++|.... ..++ ...+++|+.++.+ +++++++.+..++|++||...+.
T Consensus 81 ~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~l~~~~~~~~~~~iv~isS~~g~~--------- 151 (253)
T PRK07904 81 AAFAGGDVDVAIVAFGLLGDAEELWQNQRKAVQIAEINYTAAVSVGVLLGEKMRAQGFGQIIAMSSVAGER--------- 151 (253)
T ss_pred HHHhcCCCCEEEEeeecCCchhhcccCHHHHHHHHHHHhHhHHHHHHHHHHHHHhcCCceEEEEechhhcC---------
Confidence 59999999984321 1111 2358999988876 67777777778999999965431
Q ss_pred CCCCCCCCCCCchHHHHHHHHHHHHHHHh---CCCCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCceee
Q 047227 146 NEALPYPPKHNDFYSATKAEGEALVIKAN---GTNGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYD 222 (485)
Q Consensus 146 ~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~---~~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~ 222 (485)
+..+...|+.||+....+.+.+. +.+++++++++||.+..+... .... . ..
T Consensus 152 ------~~~~~~~Y~~sKaa~~~~~~~l~~el~~~~i~v~~v~Pg~v~t~~~~-----------~~~~-----~----~~ 205 (253)
T PRK07904 152 ------VRRSNFVYGSTKAGLDGFYLGLGEALREYGVRVLVVRPGQVRTRMSA-----------HAKE-----A----PL 205 (253)
T ss_pred ------CCCCCcchHHHHHHHHHHHHHHHHHHhhcCCEEEEEeeCceecchhc-----------cCCC-----C----CC
Confidence 11234579999999887665543 356899999999999865211 0000 0 12
Q ss_pred cccHHHHHHHHHHHHH
Q 047227 223 FTYVANVAHAHICAER 238 (485)
Q Consensus 223 ~i~v~D~a~a~~~~~~ 238 (485)
.+..+|+|+.++.+++
T Consensus 206 ~~~~~~~A~~i~~~~~ 221 (253)
T PRK07904 206 TVDKEDVAKLAVTAVA 221 (253)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 4678999999998876
|
|
| >PRK05867 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.2e-15 Score=142.02 Aligned_cols=220 Identities=15% Similarity=0.104 Sum_probs=149.6
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhh--cCCCeEEEEecCCCHHHHHHHhc
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEAL--RSGRAHYVSFDLRHKAQVLQALQ 82 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~Dl~d~~~l~~~~~ 82 (485)
.+++++|||||+|.||.++++.|+++| ++|.+.+|...... . ....+ ...++..+.+|++|++++.++++
T Consensus 7 ~~~k~vlVtGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~----~---~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~ 78 (253)
T PRK05867 7 LHGKRALITGASTGIGKRVALAYVEAG-AQVAIAARHLDALE----K---LADEIGTSGGKVVPVCCDVSQHQQVTSMLD 78 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEcCCHHHHH----H---HHHHHHhcCCeEEEEEccCCCHHHHHHHHH
Confidence 356899999999999999999999999 58998887643211 0 11111 12467889999999998877764
Q ss_pred -------CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHHHhc----C-CCEEEEecCccccccCCCCcC
Q 047227 83 -------GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDACAEL----K-VKRLIYTSSPSVVFDGVHGII 143 (485)
Q Consensus 83 -------~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~~~~----~-v~r~V~~SS~~vy~~~~~~~~ 143 (485)
++|++||+|+... ..++.+..+++|+.++..+.+++... + -.++|++||.......
T Consensus 79 ~~~~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~----- 153 (253)
T PRK05867 79 QVTAELGGIDIAVCNAGIITVTPMLDMPLEEFQRLQNTNVTGVFLTAQAAAKAMVKQGQGGVIINTASMSGHIIN----- 153 (253)
T ss_pred HHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCcEEEEECcHHhcCCC-----
Confidence 5899999999322 22345667899999999998887532 2 2479999886432100
Q ss_pred CCCCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCce
Q 047227 144 NGNEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNV 220 (485)
Q Consensus 144 ~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~ 220 (485)
.......|+.+|...+.+.+.++.+ .|+++.+++||.+-.+..... +.......... ..
T Consensus 154 --------~~~~~~~Y~asKaal~~~~~~la~e~~~~gI~vn~i~PG~v~t~~~~~~-~~~~~~~~~~~---------~~ 215 (253)
T PRK05867 154 --------VPQQVSHYCASKAAVIHLTKAMAVELAPHKIRVNSVSPGYILTELVEPY-TEYQPLWEPKI---------PL 215 (253)
T ss_pred --------CCCCccchHHHHHHHHHHHHHHHHHHhHhCeEEEEeecCCCCCcccccc-hHHHHHHHhcC---------CC
Confidence 0112357999999999999987654 589999999999976643221 11111222111 11
Q ss_pred eecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCC
Q 047227 221 YDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNME 261 (485)
Q Consensus 221 ~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~ 261 (485)
..+..++|+|+++..++.... .-..|+.+.+.++.
T Consensus 216 ~r~~~p~~va~~~~~L~s~~~------~~~tG~~i~vdgG~ 250 (253)
T PRK05867 216 GRLGRPEELAGLYLYLASEAS------SYMTGSDIVIDGGY 250 (253)
T ss_pred CCCcCHHHHHHHHHHHcCccc------CCcCCCeEEECCCc
Confidence 235679999999998865211 22567788777653
|
|
| >PRK07062 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.3e-14 Score=139.63 Aligned_cols=225 Identities=18% Similarity=0.107 Sum_probs=146.2
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc-
Q 047227 4 EENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ- 82 (485)
Q Consensus 4 ~~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~- 82 (485)
..+++++|||||+|.||.++++.|+++| ++|++++|..........+ +.......++..+.+|++|.+++.++++
T Consensus 5 ~l~~k~~lItGas~giG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~---~~~~~~~~~~~~~~~D~~~~~~v~~~~~~ 80 (265)
T PRK07062 5 QLEGRVAVVTGGSSGIGLATVELLLEAG-ASVAICGRDEERLASAEAR---LREKFPGARLLAARCDVLDEADVAAFAAA 80 (265)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCC-CeEEEEeCCHHHHHHHHHH---HHhhCCCceEEEEEecCCCHHHHHHHHHH
Confidence 4567899999999999999999999999 6899998865321110000 1111112367789999999998877653
Q ss_pred ------CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHH----HhcCCCEEEEecCccccccCCCCcCCC
Q 047227 83 ------GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDAC----AELKVKRLIYTSSPSVVFDGVHGIING 145 (485)
Q Consensus 83 ------~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~----~~~~v~r~V~~SS~~vy~~~~~~~~~~ 145 (485)
++|++||+||... ..+++...+++|+.++..+.+++ ++.+..++|++||...+.
T Consensus 81 ~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~--------- 151 (265)
T PRK07062 81 VEARFGGVDMLVNNAGQGRVSTFADTTDDAWRDELELKYFSVINPTRAFLPLLRASAAASIVCVNSLLALQ--------- 151 (265)
T ss_pred HHHhcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhccCCcEEEEeccccccC---------
Confidence 3799999999321 22245667888887766665554 444557999999976542
Q ss_pred CCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCCh----------HHHHHHHHcCCCeE
Q 047227 146 NEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLLV----------PSLVAAARAGKSKF 212 (485)
Q Consensus 146 ~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~~----------~~~~~~~~~g~~~~ 212 (485)
+......|+.+|+..+.+.+.++.+ .|+++++++||.+-.+.....+ ..+.........
T Consensus 152 ------~~~~~~~y~asKaal~~~~~~la~e~~~~gi~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 223 (265)
T PRK07062 152 ------PEPHMVATSAARAGLLNLVKSLATELAPKGVRVNSILLGLVESGQWRRRYEARADPGQSWEAWTAALARKKG-- 223 (265)
T ss_pred ------CCCCchHhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCccccchhhhHHHHhhccCCChHHHHHHHhhcCC--
Confidence 1123457999999988887766543 5899999999998765321100 111111110010
Q ss_pred EecCCCceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCC
Q 047227 213 IIGDGNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNM 260 (485)
Q Consensus 213 ~~g~g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~ 260 (485)
-....+...+|+|+++..++.... .-..|+.+.+.++
T Consensus 224 -----~p~~r~~~p~~va~~~~~L~s~~~------~~~tG~~i~vdgg 260 (265)
T PRK07062 224 -----IPLGRLGRPDEAARALFFLASPLS------SYTTGSHIDVSGG 260 (265)
T ss_pred -----CCcCCCCCHHHHHHHHHHHhCchh------cccccceEEEcCc
Confidence 112236678999999988754211 1256778877665
|
|
| >TIGR02415 23BDH acetoin reductases | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.9e-15 Score=143.03 Aligned_cols=221 Identities=23% Similarity=0.172 Sum_probs=143.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhh-cCCCeEEEEecCCCHHHHHHHhc----
Q 047227 8 RLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEAL-RSGRAHYVSFDLRHKAQVLQALQ---- 82 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~---- 82 (485)
++++||||+|+||.++++.|+++| .+|.+++|...... + ...... ...++..+.+|++|++++.++++
T Consensus 1 k~~lItG~sg~iG~~la~~l~~~G-~~v~~~~r~~~~~~----~--~~~~l~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~ 73 (254)
T TIGR02415 1 KVALVTGGAQGIGKGIAERLAKDG-FAVAVADLNEETAK----E--TAKEINQAGGKAVAYKLDVSDKDQVFSAIDQAAE 73 (254)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCC-CEEEEEeCCHHHHH----H--HHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHH
Confidence 479999999999999999999999 58888887632110 0 011111 13467889999999998877654
Q ss_pred ---CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHHHh----cC-CCEEEEecCccccccCCCCcCCCCC
Q 047227 83 ---GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDACAE----LK-VKRLIYTSSPSVVFDGVHGIINGNE 147 (485)
Q Consensus 83 ---~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~~~----~~-v~r~V~~SS~~vy~~~~~~~~~~~e 147 (485)
.+|+|||+++... +..+.+..+++|+.++..+++++.. .+ .+++|++||.....
T Consensus 74 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~----------- 142 (254)
T TIGR02415 74 KFGGFDVMVNNAGVAPITPILEITEEELKKVYNVNVKGVLFGIQAAARQFKKQGHGGKIINAASIAGHE----------- 142 (254)
T ss_pred HcCCCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEecchhhcC-----------
Confidence 4799999999321 2234567799999999877766553 33 36899999865432
Q ss_pred CCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEe------cCCC
Q 047227 148 ALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFII------GDGN 218 (485)
Q Consensus 148 ~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~------g~g~ 218 (485)
+....+.|+.+|...|.+++.++.+ .++++.+++|+.+..+.... +............. ....
T Consensus 143 ----~~~~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~Pg~i~t~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 214 (254)
T TIGR02415 143 ----GNPILSAYSSTKFAVRGLTQTAAQELAPKGITVNAYCPGIVKTPMWEE----IDEETSEIAGKPIGEGFEEFSSEI 214 (254)
T ss_pred ----CCCCCcchHHHHHHHHHHHHHHHHHhcccCeEEEEEecCcccChhhhh----hhhhhhhcccCchHHHHHHHHhhC
Confidence 1234568999999999998876544 47999999999886553211 11000000000000 0000
Q ss_pred ceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCC
Q 047227 219 NVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNM 260 (485)
Q Consensus 219 ~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~ 260 (485)
....+..++|+++++..++...... ..|+.+.+.++
T Consensus 215 ~~~~~~~~~~~a~~~~~l~~~~~~~------~~g~~~~~d~g 250 (254)
T TIGR02415 215 ALGRPSEPEDVAGLVSFLASEDSDY------ITGQSILVDGG 250 (254)
T ss_pred CCCCCCCHHHHHHHHHhhcccccCC------ccCcEEEecCC
Confidence 1123778899999999887632211 44666655543
|
One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733). |
| >PRK05866 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=9.3e-15 Score=142.66 Aligned_cols=193 Identities=17% Similarity=0.138 Sum_probs=137.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhh--cCCCeEEEEecCCCHHHHHHHhc-
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEAL--RSGRAHYVSFDLRHKAQVLQALQ- 82 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~Dl~d~~~l~~~~~- 82 (485)
.+++++||||+|.||.++++.|.++| ++|.+++|...... + +...+ ...++.++.+|+.|.+++.++++
T Consensus 39 ~~k~vlItGasggIG~~la~~La~~G-~~Vi~~~R~~~~l~----~---~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~ 110 (293)
T PRK05866 39 TGKRILLTGASSGIGEAAAEQFARRG-ATVVAVARREDLLD----A---VADRITRAGGDAMAVPCDLSDLDAVDALVAD 110 (293)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEECCHHHHH----H---HHHHHHhcCCcEEEEEccCCCHHHHHHHHHH
Confidence 45899999999999999999999999 69999988643211 0 11111 12457889999999998888776
Q ss_pred ------CCCEEEEcCCCCCC---------CCchhhhHHHHHHHHHHHHHHHH----hcCCCEEEEecCccccccCCCCcC
Q 047227 83 ------GAEVVFHMAAPNSS---------INNHKLHHSVNVEGTKNVIDACA----ELKVKRLIYTSSPSVVFDGVHGII 143 (485)
Q Consensus 83 ------~~d~Vih~aa~~~~---------~~~~~~~~~~nv~~t~~ll~a~~----~~~v~r~V~~SS~~vy~~~~~~~~ 143 (485)
++|+|||+||.... ..+.+..+++|+.++.++++++. +.+..++|++||.+++..
T Consensus 111 ~~~~~g~id~li~~AG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~------ 184 (293)
T PRK05866 111 VEKRIGGVDILINNAGRSIRRPLAESLDRWHDVERTMVLNYYAPLRLIRGLAPGMLERGDGHIINVATWGVLSE------ 184 (293)
T ss_pred HHHHcCCCCEEEECCCCCCCcchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEECChhhcCC------
Confidence 58999999993211 12345678999999888777654 566779999999765421
Q ss_pred CCCCCCCCCCCCCchHHHHHHHHHHHHHHHhC---CCCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCce
Q 047227 144 NGNEALPYPPKHNDFYSATKAEGEALVIKANG---TNGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNV 220 (485)
Q Consensus 144 ~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~---~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~ 220 (485)
. ....+.|+.+|+..+.+.+.++. ..++++++++||.+-.+.... ... .++
T Consensus 185 ----~----~p~~~~Y~asKaal~~l~~~la~e~~~~gI~v~~v~pg~v~T~~~~~-----------~~~----~~~--- 238 (293)
T PRK05866 185 ----A----SPLFSVYNASKAALSAVSRVIETEWGDRGVHSTTLYYPLVATPMIAP-----------TKA----YDG--- 238 (293)
T ss_pred ----C----CCCcchHHHHHHHHHHHHHHHHHHhcccCcEEEEEEcCcccCccccc-----------ccc----ccC---
Confidence 0 12346899999999998877654 358999999999876552110 000 011
Q ss_pred eecccHHHHHHHHHHHHH
Q 047227 221 YDFTYVANVAHAHICAER 238 (485)
Q Consensus 221 ~~~i~v~D~a~a~~~~~~ 238 (485)
...+..+++|+.++.+++
T Consensus 239 ~~~~~pe~vA~~~~~~~~ 256 (293)
T PRK05866 239 LPALTADEAAEWMVTAAR 256 (293)
T ss_pred CCCCCHHHHHHHHHHHHh
Confidence 124678999999988876
|
|
| >PRK08278 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.1e-14 Score=140.66 Aligned_cols=205 Identities=16% Similarity=0.131 Sum_probs=138.7
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccc-hhhhhhh-hcCCCeEEEEecCCCHHHHHHHhc
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEE-QGILGEA-LRSGRAHYVSFDLRHKAQVLQALQ 82 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~-~~~~~~~-~~~~~v~~~~~Dl~d~~~l~~~~~ 82 (485)
.+++++|||||+|+||+++++.|.++| ++|.+++|........... ....... ....++.++.+|++|++++.++++
T Consensus 4 ~~~k~vlItGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~ 82 (273)
T PRK08278 4 LSGKTLFITGASRGIGLAIALRAARDG-ANIVIAAKTAEPHPKLPGTIHTAAEEIEAAGGQALPLVGDVRDEDQVAAAVA 82 (273)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEecccccccchhhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHH
Confidence 346899999999999999999999999 6899998865421111000 0000111 113468889999999998887765
Q ss_pred -------CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHHHhc----CCCEEEEecCccccccCCCCcCC
Q 047227 83 -------GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDACAEL----KVKRLIYTSSPSVVFDGVHGIIN 144 (485)
Q Consensus 83 -------~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~~~~----~v~r~V~~SS~~vy~~~~~~~~~ 144 (485)
++|+|||+|+... ..++.+..+++|+.++.++++++... +-.++|++||....
T Consensus 83 ~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~~~g~iv~iss~~~~--------- 153 (273)
T PRK08278 83 KAVERFGGIDICVNNASAINLTGTEDTPMKRFDLMQQINVRGTFLVSQACLPHLKKSENPHILTLSPPLNL--------- 153 (273)
T ss_pred HHHHHhCCCCEEEECCCCcCCCCcccCCHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCEEEEECCchhc---------
Confidence 5899999999321 12345667889999999999998643 23578888874321
Q ss_pred CCCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCcee
Q 047227 145 GNEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVY 221 (485)
Q Consensus 145 ~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~~ 221 (485)
. .. ...+...|+.+|...|.+++.++.+ ++++++.+.|+.++... .......+. ....
T Consensus 154 -~-~~--~~~~~~~Y~~sK~a~~~~~~~la~el~~~~I~v~~i~Pg~~i~t~-------~~~~~~~~~--------~~~~ 214 (273)
T PRK08278 154 -D-PK--WFAPHTAYTMAKYGMSLCTLGLAEEFRDDGIAVNALWPRTTIATA-------AVRNLLGGD--------EAMR 214 (273)
T ss_pred -c-cc--ccCCcchhHHHHHHHHHHHHHHHHHhhhcCcEEEEEeCCCccccH-------HHHhccccc--------cccc
Confidence 0 00 0145678999999999999987754 47999999998533211 111111111 1122
Q ss_pred ecccHHHHHHHHHHHHH
Q 047227 222 DFTYVANVAHAHICAER 238 (485)
Q Consensus 222 ~~i~v~D~a~a~~~~~~ 238 (485)
.+...+|+|++++.++.
T Consensus 215 ~~~~p~~va~~~~~l~~ 231 (273)
T PRK08278 215 RSRTPEIMADAAYEILS 231 (273)
T ss_pred ccCCHHHHHHHHHHHhc
Confidence 46678999999998865
|
|
| >PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.3e-14 Score=137.13 Aligned_cols=214 Identities=13% Similarity=0.064 Sum_probs=144.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc---
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ--- 82 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 82 (485)
++++||||||+|+||.++++.|.++| ++|.+++|...... . .........+++++.+|++|++++.++++
T Consensus 4 ~~~~vlItGa~g~iG~~~a~~l~~~G-~~V~~~~r~~~~~~----~--~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 76 (238)
T PRK05786 4 KGKKVAIIGVSEGLGYAVAYFALKEG-AQVCINSRNENKLK----R--MKKTLSKYGNIHYVVGDVSSTESARNVIEKAA 76 (238)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCC-CEEEEEeCCHHHHH----H--HHHHHHhcCCeEEEECCCCCHHHHHHHHHHHH
Confidence 46799999999999999999999999 69999988643110 0 01111112368899999999998877664
Q ss_pred ----CCCEEEEcCCCCC-----CCCchhhhHHHHHHHHHHHHHHHHhc--CCCEEEEecCccccccCCCCcCCCCCCCCC
Q 047227 83 ----GAEVVFHMAAPNS-----SINNHKLHHSVNVEGTKNVIDACAEL--KVKRLIYTSSPSVVFDGVHGIINGNEALPY 151 (485)
Q Consensus 83 ----~~d~Vih~aa~~~-----~~~~~~~~~~~nv~~t~~ll~a~~~~--~v~r~V~~SS~~vy~~~~~~~~~~~e~~~~ 151 (485)
+.|.++|+++... ..++....+++|+.++.++++.+... .-.++|++||......
T Consensus 77 ~~~~~id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~~-------------- 142 (238)
T PRK05786 77 KVLNAIDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVSSMSGIYK-------------- 142 (238)
T ss_pred HHhCCCCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEecchhccc--------------
Confidence 3699999998321 11234556789999988888776653 1247999998654210
Q ss_pred CCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCceeecccHHH
Q 047227 152 PPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVAN 228 (485)
Q Consensus 152 ~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~D 228 (485)
+..+...|+.+|...+.+++.++.. .+++++++||+.++++.... ..+ . . .. . .....+..+|
T Consensus 143 ~~~~~~~Y~~sK~~~~~~~~~~~~~~~~~gi~v~~i~pg~v~~~~~~~--~~~-~----~--~~---~--~~~~~~~~~~ 208 (238)
T PRK05786 143 ASPDQLSYAVAKAGLAKAVEILASELLGRGIRVNGIAPTTISGDFEPE--RNW-K----K--LR---K--LGDDMAPPED 208 (238)
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCccCCCCCch--hhh-h----h--hc---c--ccCCCCCHHH
Confidence 1234467999999999888777654 48999999999999874221 000 0 0 00 0 0113567899
Q ss_pred HHHHHHHHHHHhccccchhhccCCcEEEeeCC
Q 047227 229 VAHAHICAERALASEVTVAEKAAGQAYFVTNM 260 (485)
Q Consensus 229 ~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~ 260 (485)
++++++.++.... ....|+.+.+.++
T Consensus 209 va~~~~~~~~~~~------~~~~g~~~~~~~~ 234 (238)
T PRK05786 209 FAKVIIWLLTDEA------DWVDGVVIPVDGG 234 (238)
T ss_pred HHHHHHHHhcccc------cCccCCEEEECCc
Confidence 9999998875311 1245777766543
|
|
| >PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.4e-14 Score=140.71 Aligned_cols=219 Identities=19% Similarity=0.190 Sum_probs=144.8
Q ss_pred CCCCCCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhh--cCCCeEEEEecCCCHHHHH
Q 047227 1 MSGEENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEAL--RSGRAHYVSFDLRHKAQVL 78 (485)
Q Consensus 1 M~~~~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~Dl~d~~~l~ 78 (485)
|+...++++++||||+|+||+++++.|.++| .+|.+.++...... +. ....+ ...++.++.+|+.|.+++.
T Consensus 6 ~~~~l~~k~~lVTGas~gIG~~ia~~L~~~G-a~Vv~~~~~~~~~~---~~---~~~~i~~~g~~~~~~~~Dv~d~~~~~ 78 (306)
T PRK07792 6 NTTDLSGKVAVVTGAAAGLGRAEALGLARLG-ATVVVNDVASALDA---SD---VLDEIRAAGAKAVAVAGDISQRATAD 78 (306)
T ss_pred CCcCCCCCEEEEECCCChHHHHHHHHHHHCC-CEEEEecCCchhHH---HH---HHHHHHhcCCeEEEEeCCCCCHHHHH
Confidence 3445678999999999999999999999999 58888876532110 00 11111 1346888999999998887
Q ss_pred HHhc------CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHHHhc--------C---CCEEEEecCccc
Q 047227 79 QALQ------GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDACAEL--------K---VKRLIYTSSPSV 134 (485)
Q Consensus 79 ~~~~------~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~~~~--------~---v~r~V~~SS~~v 134 (485)
++++ ++|+|||+||... ...++...+++|+.++.++.+++... + -.++|++||...
T Consensus 79 ~~~~~~~~~g~iD~li~nAG~~~~~~~~~~~~~~~~~~~~vn~~g~~~l~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~ 158 (306)
T PRK07792 79 ELVATAVGLGGLDIVVNNAGITRDRMLFNMSDEEWDAVIAVHLRGHFLLTRNAAAYWRAKAKAAGGPVYGRIVNTSSEAG 158 (306)
T ss_pred HHHHHHHHhCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhcccCCCCCcEEEEECCccc
Confidence 7764 4899999999322 22356678899999999999886521 1 248999998665
Q ss_pred cccCCCCcCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhC---CCCceEEEEecCCcccCCCCCChHHHHHHHHcCCCe
Q 047227 135 VFDGVHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANG---TNGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSK 211 (485)
Q Consensus 135 y~~~~~~~~~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~---~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~ 211 (485)
+. +......|+.+|...+.+.+.++. .+|+++.++.|+. .. ....... ...+
T Consensus 159 ~~---------------~~~~~~~Y~asKaal~~l~~~la~e~~~~gI~vn~i~Pg~--~t---~~~~~~~----~~~~- 213 (306)
T PRK07792 159 LV---------------GPVGQANYGAAKAGITALTLSAARALGRYGVRANAICPRA--RT---AMTADVF----GDAP- 213 (306)
T ss_pred cc---------------CCCCCchHHHHHHHHHHHHHHHHHHhhhcCeEEEEECCCC--CC---chhhhhc----cccc-
Confidence 42 112345799999999999887765 3689999999973 11 1111111 0000
Q ss_pred EEecCCCceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCC
Q 047227 212 FIIGDGNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNM 260 (485)
Q Consensus 212 ~~~g~g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~ 260 (485)
... ....+.+.++|+|.++..++..... ...|+.|.+.++
T Consensus 214 ~~~---~~~~~~~~pe~va~~v~~L~s~~~~------~~tG~~~~v~gg 253 (306)
T PRK07792 214 DVE---AGGIDPLSPEHVVPLVQFLASPAAA------EVNGQVFIVYGP 253 (306)
T ss_pred hhh---hhccCCCCHHHHHHHHHHHcCcccc------CCCCCEEEEcCC
Confidence 000 0112345799999998877542111 256777777654
|
|
| >PRK08703 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=1e-14 Score=137.99 Aligned_cols=196 Identities=13% Similarity=0.068 Sum_probs=134.2
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhh--cCCCeEEEEecCCC--HHHHHH
Q 047227 4 EENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEAL--RSGRAHYVSFDLRH--KAQVLQ 79 (485)
Q Consensus 4 ~~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~Dl~d--~~~l~~ 79 (485)
.+++++++||||+|+||.++++.|+++| ++|.+++|+...... ...... ....+.++.+|+.| .+++.+
T Consensus 3 ~l~~k~vlItG~sggiG~~la~~l~~~g-~~V~~~~r~~~~~~~------~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~ 75 (239)
T PRK08703 3 TLSDKTILVTGASQGLGEQVAKAYAAAG-ATVILVARHQKKLEK------VYDAIVEAGHPEPFAIRFDLMSAEEKEFEQ 75 (239)
T ss_pred CCCCCEEEEECCCCcHHHHHHHHHHHcC-CEEEEEeCChHHHHH------HHHHHHHcCCCCcceEEeeecccchHHHHH
Confidence 3456899999999999999999999999 589999887532110 111111 12356778899875 333433
Q ss_pred Hh--------cCCCEEEEcCCCCC--------CCCchhhhHHHHHHHHHHHHHHHHh----cCCCEEEEecCccccccCC
Q 047227 80 AL--------QGAEVVFHMAAPNS--------SINNHKLHHSVNVEGTKNVIDACAE----LKVKRLIYTSSPSVVFDGV 139 (485)
Q Consensus 80 ~~--------~~~d~Vih~aa~~~--------~~~~~~~~~~~nv~~t~~ll~a~~~----~~v~r~V~~SS~~vy~~~~ 139 (485)
++ .++|+|||+|+... ..+++...+++|+.++.++++++.. .+..++|++||.....
T Consensus 76 ~~~~i~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~~ss~~~~~--- 152 (239)
T PRK08703 76 FAATIAEATQGKLDGIVHCAGYFYALSPLDFQTVAEWVNQYRINTVAPMGLTRALFPLLKQSPDASVIFVGESHGET--- 152 (239)
T ss_pred HHHHHHHHhCCCCCEEEEeccccccCCCccccCHHHHHHHHHHhhhHHHHHHHHHHHHHHhCCCCEEEEEecccccc---
Confidence 32 34799999999321 1123455789999999888887754 3456899999853320
Q ss_pred CCcCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhCCC----CceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEec
Q 047227 140 HGIINGNEALPYPPKHNDFYSATKAEGEALVIKANGTN----GLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIG 215 (485)
Q Consensus 140 ~~~~~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~----g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g 215 (485)
+......|+.+|+..|.+++.++.+. ++++.+++||.+++|...... .+
T Consensus 153 ------------~~~~~~~Y~~sKaa~~~~~~~la~e~~~~~~i~v~~v~pG~v~t~~~~~~~--------~~------- 205 (239)
T PRK08703 153 ------------PKAYWGGFGASKAALNYLCKVAADEWERFGNLRANVLVPGPINSPQRIKSH--------PG------- 205 (239)
T ss_pred ------------CCCCccchHHhHHHHHHHHHHHHHHhccCCCeEEEEEecCcccCccccccC--------CC-------
Confidence 12344679999999999988876543 599999999999988522110 11
Q ss_pred CCCceeecccHHHHHHHHHHHHH
Q 047227 216 DGNNVYDFTYVANVAHAHICAER 238 (485)
Q Consensus 216 ~g~~~~~~i~v~D~a~a~~~~~~ 238 (485)
.....+...+|++.++..++.
T Consensus 206 --~~~~~~~~~~~~~~~~~~~~~ 226 (239)
T PRK08703 206 --EAKSERKSYGDVLPAFVWWAS 226 (239)
T ss_pred --CCccccCCHHHHHHHHHHHhC
Confidence 111234678999999988865
|
|
| >PRK06924 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=6.1e-15 Score=140.62 Aligned_cols=198 Identities=14% Similarity=0.050 Sum_probs=132.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCC---
Q 047227 8 RLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGA--- 84 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~--- 84 (485)
|++|||||+|+||+++++.|.++| ++|.+++|....... . +.. ....+++++.+|++|++++.++++.+
T Consensus 2 k~vlItGasggiG~~ia~~l~~~g-~~V~~~~r~~~~~~~---~---~~~-~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 73 (251)
T PRK06924 2 RYVIITGTSQGLGEAIANQLLEKG-THVISISRTENKELT---K---LAE-QYNSNLTFHSLDLQDVHELETNFNEILSS 73 (251)
T ss_pred cEEEEecCCchHHHHHHHHHHhcC-CEEEEEeCCchHHHH---H---HHh-ccCCceEEEEecCCCHHHHHHHHHHHHHh
Confidence 689999999999999999999999 689998886421110 0 011 11346889999999999888777531
Q ss_pred --------CEEEEcCCCC--------CCCCchhhhHHHHHHHHHHHHHHH----HhcC-CCEEEEecCccccccCCCCcC
Q 047227 85 --------EVVFHMAAPN--------SSINNHKLHHSVNVEGTKNVIDAC----AELK-VKRLIYTSSPSVVFDGVHGII 143 (485)
Q Consensus 85 --------d~Vih~aa~~--------~~~~~~~~~~~~nv~~t~~ll~a~----~~~~-v~r~V~~SS~~vy~~~~~~~~ 143 (485)
..+||++|.. .+.++....+++|+.++..+++++ ++.+ .+++|++||...+.
T Consensus 74 ~~~~~~~~~~~v~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~------- 146 (251)
T PRK06924 74 IQEDNVSSIHLINNAGMVAPIKPIEKAESEELITNVHLNLLAPMILTSTFMKHTKDWKVDKRVINISSGAAKN------- 146 (251)
T ss_pred cCcccCCceEEEEcceecccCcccccCCHHHHHHHhccceehHHHHHHHHHHHHhccCCCceEEEecchhhcC-------
Confidence 2789998832 122345667888988866665554 4433 46899999965431
Q ss_pred CCCCCCCCCCCCCchHHHHHHHHHHHHHHHhCC-----CCceEEEEecCCcccCCCCC-------ChHHHHHHHHcCCCe
Q 047227 144 NGNEALPYPPKHNDFYSATKAEGEALVIKANGT-----NGLLTCCIRPSSIFGPGDRL-------LVPSLVAAARAGKSK 211 (485)
Q Consensus 144 ~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~-----~g~~~~ilRp~~v~Gp~~~~-------~~~~~~~~~~~g~~~ 211 (485)
+..+...|+.+|+..|.+++.++.+ .++++..++||.+-.+.... .... .......
T Consensus 147 --------~~~~~~~Y~~sKaa~~~~~~~la~e~~~~~~~i~v~~v~Pg~v~t~~~~~~~~~~~~~~~~-~~~~~~~--- 214 (251)
T PRK06924 147 --------PYFGWSAYCSSKAGLDMFTQTVATEQEEEEYPVKIVAFSPGVMDTNMQAQIRSSSKEDFTN-LDRFITL--- 214 (251)
T ss_pred --------CCCCcHHHhHHHHHHHHHHHHHHHHhhhcCCCeEEEEecCCccccHhHHHHHhcCcccchH-HHHHHHH---
Confidence 2345678999999999999877643 47999999999876542100 0000 0011100
Q ss_pred EEecCCCceeecccHHHHHHHHHHHHH
Q 047227 212 FIIGDGNNVYDFTYVANVAHAHICAER 238 (485)
Q Consensus 212 ~~~g~g~~~~~~i~v~D~a~a~~~~~~ 238 (485)
. ....+..++|+|++++.++.
T Consensus 215 --~----~~~~~~~~~dva~~~~~l~~ 235 (251)
T PRK06924 215 --K----EEGKLLSPEYVAKALRNLLE 235 (251)
T ss_pred --h----hcCCcCCHHHHHHHHHHHHh
Confidence 0 01125789999999998876
|
|
| >TIGR01831 fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductase, putative | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.2e-14 Score=137.55 Aligned_cols=197 Identities=21% Similarity=0.155 Sum_probs=136.9
Q ss_pred EEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhh--cCCCeEEEEecCCCHHHHHHHhc-----
Q 047227 10 CVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEAL--RSGRAHYVSFDLRHKAQVLQALQ----- 82 (485)
Q Consensus 10 iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~Dl~d~~~l~~~~~----- 82 (485)
||||||+|+||.++++.|.++| ++|.++++....... . ....+ ...++.++.+|+.|.+++.++++
T Consensus 1 vlItGas~giG~~~a~~l~~~G-~~v~~~~~~~~~~~~---~---~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 73 (239)
T TIGR01831 1 VLVTGASRGIGRAIANRLAADG-FEICVHYHSGRSDAE---S---VVSAIQAQGGNARLLQFDVADRVACRTLLEADIAE 73 (239)
T ss_pred CEEeCCCchHHHHHHHHHHHCC-CEEEEEeCCCHHHHH---H---HHHHHHHcCCeEEEEEccCCCHHHHHHHHHHHHHH
Confidence 6899999999999999999999 588888765321110 0 11111 13468899999999998877664
Q ss_pred --CCCEEEEcCCCC-------CCCCchhhhHHHHHHHHHHHHHHHH-----hcCCCEEEEecCccccccCCCCcCCCCCC
Q 047227 83 --GAEVVFHMAAPN-------SSINNHKLHHSVNVEGTKNVIDACA-----ELKVKRLIYTSSPSVVFDGVHGIINGNEA 148 (485)
Q Consensus 83 --~~d~Vih~aa~~-------~~~~~~~~~~~~nv~~t~~ll~a~~-----~~~v~r~V~~SS~~vy~~~~~~~~~~~e~ 148 (485)
..|.+||+++.. ....++...+++|+.++.++++++. +.+.+++|++||...+.+
T Consensus 74 ~~~i~~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~vsS~~~~~~----------- 142 (239)
T TIGR01831 74 HGAYYGVVLNAGITRDAAFPALSEEDWDIVIHTNLDGFYNVIHPCTMPMIRARQGGRIITLASVSGVMG----------- 142 (239)
T ss_pred cCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcCCeEEEEEcchhhccC-----------
Confidence 369999999832 1334567789999999999988763 234568999999655421
Q ss_pred CCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCceeeccc
Q 047227 149 LPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFTY 225 (485)
Q Consensus 149 ~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~ 225 (485)
......|+.+|...+.+.+.++.+ .|++++.++|+.+.++......+. .....+.-+ ...+..
T Consensus 143 ----~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~-~~~~~~~~~---------~~~~~~ 208 (239)
T TIGR01831 143 ----NRGQVNYSAAKAGLIGATKALAVELAKRKITVNCIAPGLIDTEMLAEVEHD-LDEALKTVP---------MNRMGQ 208 (239)
T ss_pred ----CCCCcchHHHHHHHHHHHHHHHHHHhHhCeEEEEEEEccCccccchhhhHH-HHHHHhcCC---------CCCCCC
Confidence 123457999999988887776543 589999999999987653322121 212221111 123456
Q ss_pred HHHHHHHHHHHHH
Q 047227 226 VANVAHAHICAER 238 (485)
Q Consensus 226 v~D~a~a~~~~~~ 238 (485)
.+|+++++..++.
T Consensus 209 ~~~va~~~~~l~~ 221 (239)
T TIGR01831 209 PAEVASLAGFLMS 221 (239)
T ss_pred HHHHHHHHHHHcC
Confidence 8999999998865
|
This model represents a small, very well conserved family of proteins closely related to the FabG family, TIGR01830, and possibly equal in function. In all completed genomes with a member of this family, a FabG in TIGR01830 is also found. |
| >PRK09072 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=2e-14 Score=138.07 Aligned_cols=197 Identities=15% Similarity=0.089 Sum_probs=137.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc---
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ--- 82 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 82 (485)
+++++|||||+|+||.++++.|+++| ++|++++|....... .........++.++.+|++|++++.++++
T Consensus 4 ~~~~vlItG~s~~iG~~ia~~l~~~G-~~V~~~~r~~~~~~~------~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~ 76 (263)
T PRK09072 4 KDKRVLLTGASGGIGQALAEALAAAG-ARLLLVGRNAEKLEA------LAARLPYPGRHRWVVADLTSEAGREAVLARAR 76 (263)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEECCHHHHHH------HHHHHhcCCceEEEEccCCCHHHHHHHHHHHH
Confidence 45799999999999999999999999 689999886432110 11111123478899999999988777654
Q ss_pred ---CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHHHh----cCCCEEEEecCccccccCCCCcCCCCCC
Q 047227 83 ---GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDACAE----LKVKRLIYTSSPSVVFDGVHGIINGNEA 148 (485)
Q Consensus 83 ---~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~~~----~~v~r~V~~SS~~vy~~~~~~~~~~~e~ 148 (485)
++|+|||+|+... ...+....+++|+.++.++++++.. .+..++|++||...+.
T Consensus 77 ~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~------------ 144 (263)
T PRK09072 77 EMGGINVLINNAGVNHFALLEDQDPEAIERLLALNLTAPMQLTRALLPLLRAQPSAMVVNVGSTFGSI------------ 144 (263)
T ss_pred hcCCCCEEEECCCCCCccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCEEEEecChhhCc------------
Confidence 4799999999422 1224466788999999999988764 3346899998854432
Q ss_pred CCCCCCCCchHHHHHHHHHHHHHHHhC---CCCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCceeeccc
Q 047227 149 LPYPPKHNDFYSATKAEGEALVIKANG---TNGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFTY 225 (485)
Q Consensus 149 ~~~~~~~~~~Y~~sK~~~E~~~~~~~~---~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~ 225 (485)
+......|+.+|...+.+++.++. ..+++++++.|+.+..+..... . . . .... .......
T Consensus 145 ---~~~~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~Pg~~~t~~~~~~----~-----~-~--~~~~--~~~~~~~ 207 (263)
T PRK09072 145 ---GYPGYASYCASKFALRGFSEALRRELADTGVRVLYLAPRATRTAMNSEA----V-----Q-A--LNRA--LGNAMDD 207 (263)
T ss_pred ---CCCCccHHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCcccccchhhh----c-----c-c--cccc--ccCCCCC
Confidence 112346799999998888877664 3579999999998865531110 0 0 0 0000 0113567
Q ss_pred HHHHHHHHHHHHH
Q 047227 226 VANVAHAHICAER 238 (485)
Q Consensus 226 v~D~a~a~~~~~~ 238 (485)
++|+|++++.+++
T Consensus 208 ~~~va~~i~~~~~ 220 (263)
T PRK09072 208 PEDVAAAVLQAIE 220 (263)
T ss_pred HHHHHHHHHHHHh
Confidence 8999999998877
|
|
| >PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.3e-14 Score=139.37 Aligned_cols=217 Identities=17% Similarity=0.084 Sum_probs=146.9
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc--
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ-- 82 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 82 (485)
.+++++|||||+|.||+++++.|.++| ++|.+++|...... . +...+ ..++.++.+|++|.+++.++++
T Consensus 4 ~~~k~vlVtGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~----~---~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~ 74 (263)
T PRK06200 4 LHGQVALITGGGSGIGRALVERFLAEG-ARVAVLERSAEKLA----S---LRQRF-GDHVLVVEGDVTSYADNQRAVDQT 74 (263)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCC-CEEEEEeCCHHHHH----H---HHHHh-CCcceEEEccCCCHHHHHHHHHHH
Confidence 356899999999999999999999999 68999888643210 0 11111 2457889999999988777664
Q ss_pred -----CCCEEEEcCCCCC---C--C---Cc----hhhhHHHHHHHHHHHHHHHHhc---CCCEEEEecCccccccCCCCc
Q 047227 83 -----GAEVVFHMAAPNS---S--I---NN----HKLHHSVNVEGTKNVIDACAEL---KVKRLIYTSSPSVVFDGVHGI 142 (485)
Q Consensus 83 -----~~d~Vih~aa~~~---~--~---~~----~~~~~~~nv~~t~~ll~a~~~~---~v~r~V~~SS~~vy~~~~~~~ 142 (485)
++|++||+|+... . . ++ ++..+++|+.++..+++++... .-.++|++||...+.
T Consensus 75 ~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~------ 148 (263)
T PRK06200 75 VDAFGKLDCFVGNAGIWDYNTSLVDIPAETLDTAFDEIFNVNVKGYLLGAKAALPALKASGGSMIFTLSNSSFY------ 148 (263)
T ss_pred HHhcCCCCEEEECCCCcccCCCcccCChhHHHHHHHHHeeeccHhHHHHHHHHHHHHHhcCCEEEEECChhhcC------
Confidence 4899999999421 1 1 11 4456789999999888887642 125899999977653
Q ss_pred CCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhCCC--CceEEEEecCCcccCCCCC-----------ChHHHHHHHHcCC
Q 047227 143 INGNEALPYPPKHNDFYSATKAEGEALVIKANGTN--GLLTCCIRPSSIFGPGDRL-----------LVPSLVAAARAGK 209 (485)
Q Consensus 143 ~~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~--g~~~~ilRp~~v~Gp~~~~-----------~~~~~~~~~~~g~ 209 (485)
+..+...|+.+|...+.+.+.++.+. ++++.++.||.+..+-... ..+.......+.
T Consensus 149 ---------~~~~~~~Y~~sK~a~~~~~~~la~el~~~Irvn~i~PG~i~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 218 (263)
T PRK06200 149 ---------PGGGGPLYTASKHAVVGLVRQLAYELAPKIRVNGVAPGGTVTDLRGPASLGQGETSISDSPGLADMIAAI- 218 (263)
T ss_pred ---------CCCCCchhHHHHHHHHHHHHHHHHHHhcCcEEEEEeCCccccCCcCccccCCCCcccccccchhHHhhcC-
Confidence 12344579999999999998876543 4999999999986552110 001111111111
Q ss_pred CeEEecCCCceeecccHHHHHHHHHHHHHHh-ccccchhhccCCcEEEeeCC
Q 047227 210 SKFIIGDGNNVYDFTYVANVAHAHICAERAL-ASEVTVAEKAAGQAYFVTNM 260 (485)
Q Consensus 210 ~~~~~g~g~~~~~~i~v~D~a~a~~~~~~~~-~~~~~~~~~~~g~~ynv~~~ 260 (485)
....-+...+|+|.++..++... .. -..|+.+.+.++
T Consensus 219 --------~p~~r~~~~~eva~~~~fl~s~~~~~------~itG~~i~vdgG 256 (263)
T PRK06200 219 --------TPLQFAPQPEDHTGPYVLLASRRNSR------ALTGVVINADGG 256 (263)
T ss_pred --------CCCCCCCCHHHHhhhhhheecccccC------cccceEEEEcCc
Confidence 11234677899999998876422 11 156777777655
|
|
| >PRK06953 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=8.4e-14 Score=130.29 Aligned_cols=185 Identities=14% Similarity=0.036 Sum_probs=134.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHh---c-
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQAL---Q- 82 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~---~- 82 (485)
|++++||||+|+||++++++|+++| ++|.+++|..... . .+...+++++.+|+.|.+++.+++ .
T Consensus 1 ~~~vlvtG~sg~iG~~la~~L~~~G-~~v~~~~r~~~~~----------~-~~~~~~~~~~~~D~~~~~~v~~~~~~~~~ 68 (222)
T PRK06953 1 MKTVLIVGASRGIGREFVRQYRADG-WRVIATARDAAAL----------A-ALQALGAEALALDVADPASVAGLAWKLDG 68 (222)
T ss_pred CceEEEEcCCCchhHHHHHHHHhCC-CEEEEEECCHHHH----------H-HHHhccceEEEecCCCHHHHHHHHHHhcC
Confidence 3689999999999999999999999 6899988764311 1 111235678999999999888764 2
Q ss_pred -CCCEEEEcCCCCC---------CCCchhhhHHHHHHHHHHHHHHHHhc---CCCEEEEecCccccccCCCCcCCCCCCC
Q 047227 83 -GAEVVFHMAAPNS---------SINNHKLHHSVNVEGTKNVIDACAEL---KVKRLIYTSSPSVVFDGVHGIINGNEAL 149 (485)
Q Consensus 83 -~~d~Vih~aa~~~---------~~~~~~~~~~~nv~~t~~ll~a~~~~---~v~r~V~~SS~~vy~~~~~~~~~~~e~~ 149 (485)
++|+|||+++... +.++++..+++|+.++.++++++... +-.++|++||...+... .
T Consensus 69 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~g~iv~isS~~~~~~~--------~-- 138 (222)
T PRK06953 69 EALDAAVYVAGVYGPRTEGVEPITREDFDAVMHTNVLGPMQLLPILLPLVEAAGGVLAVLSSRMGSIGD--------A-- 138 (222)
T ss_pred CCCCEEEECCCcccCCCCCcccCCHHHHHHHHhhhhhhHHHHHHHHHHhhhccCCeEEEEcCccccccc--------c--
Confidence 3899999999431 23356778999999999999998752 23478999885433211 0
Q ss_pred CCCCCCCchHHHHHHHHHHHHHHHhCCC-CceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCceeecccHHH
Q 047227 150 PYPPKHNDFYSATKAEGEALVIKANGTN-GLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVAN 228 (485)
Q Consensus 150 ~~~~~~~~~Y~~sK~~~E~~~~~~~~~~-g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~D 228 (485)
+..+...|+.+|...+.+++.++.++ +++++.++|+.+..+... + ...+..+|
T Consensus 139 --~~~~~~~Y~~sK~a~~~~~~~~~~~~~~i~v~~v~Pg~i~t~~~~--------------------~----~~~~~~~~ 192 (222)
T PRK06953 139 --TGTTGWLYRASKAALNDALRAASLQARHATCIALHPGWVRTDMGG--------------------A----QAALDPAQ 192 (222)
T ss_pred --cCCCccccHHhHHHHHHHHHHHhhhccCcEEEEECCCeeecCCCC--------------------C----CCCCCHHH
Confidence 11223469999999999999887554 789999999998765311 0 11346788
Q ss_pred HHHHHHHHHHH
Q 047227 229 VAHAHICAERA 239 (485)
Q Consensus 229 ~a~a~~~~~~~ 239 (485)
.+..+..++..
T Consensus 193 ~~~~~~~~~~~ 203 (222)
T PRK06953 193 SVAGMRRVIAQ 203 (222)
T ss_pred HHHHHHHHHHh
Confidence 88888887663
|
|
| >PRK06079 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.2e-14 Score=135.02 Aligned_cols=221 Identities=14% Similarity=0.063 Sum_probs=150.9
Q ss_pred CCCCCCCCEEEEEcCC--CchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHH
Q 047227 1 MSGEENERLCVVTGGR--GFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVL 78 (485)
Q Consensus 1 M~~~~~~~~iLVtGgt--G~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~ 78 (485)
||...++|+++||||+ +-||..+++.|.++| ++|.+.+|... . .+. ..+ +...++.++.+|++|++++.
T Consensus 1 ~~~~l~~k~~lItGas~~~gIG~a~a~~la~~G-~~Vi~~~r~~~-~---~~~---~~~-~~~~~~~~~~~Dl~~~~~v~ 71 (252)
T PRK06079 1 MSGILSGKKIVVMGVANKRSIAWGCAQAIKDQG-ATVIYTYQNDR-M---KKS---LQK-LVDEEDLLVECDVASDESIE 71 (252)
T ss_pred CccccCCCEEEEeCCCCCCchHHHHHHHHHHCC-CEEEEecCchH-H---HHH---HHh-hccCceeEEeCCCCCHHHHH
Confidence 8888888999999999 799999999999999 68888877521 0 000 111 12346788999999998887
Q ss_pred HHhc-------CCCEEEEcCCCCC-----------CCCchhhhHHHHHHHHHHHHHHHHhc--CCCEEEEecCccccccC
Q 047227 79 QALQ-------GAEVVFHMAAPNS-----------SINNHKLHHSVNVEGTKNVIDACAEL--KVKRLIYTSSPSVVFDG 138 (485)
Q Consensus 79 ~~~~-------~~d~Vih~aa~~~-----------~~~~~~~~~~~nv~~t~~ll~a~~~~--~v~r~V~~SS~~vy~~~ 138 (485)
++++ +.|++||+||... ..++++..+++|+.++..+.+++... .-.++|++||.....
T Consensus 72 ~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~in~~~~~~l~~~~~~~~~~~g~Iv~iss~~~~~-- 149 (252)
T PRK06079 72 RAFATIKERVGKIDGIVHAIAYAKKEELGGNVTDTSRDGYALAQDISAYSLIAVAKYARPLLNPGASIVTLTYFGSER-- 149 (252)
T ss_pred HHHHHHHHHhCCCCEEEEcccccccccccCCcccCCHHHHHHHhCcccHHHHHHHHHHHHhcccCceEEEEeccCccc--
Confidence 7653 3899999999321 22345677899999998888777643 125899999854321
Q ss_pred CCCcCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCC--hHHHHHHHHcCCCeEE
Q 047227 139 VHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLL--VPSLVAAARAGKSKFI 213 (485)
Q Consensus 139 ~~~~~~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~--~~~~~~~~~~g~~~~~ 213 (485)
+......|+.+|+..+.+.+.++.+ .|+++.++.||.+-.+..... -+.......+..+
T Consensus 150 -------------~~~~~~~Y~asKaal~~l~~~la~el~~~gI~vn~i~PG~v~T~~~~~~~~~~~~~~~~~~~~p--- 213 (252)
T PRK06079 150 -------------AIPNYNVMGIAKAALESSVRYLARDLGKKGIRVNAISAGAVKTLAVTGIKGHKDLLKESDSRTV--- 213 (252)
T ss_pred -------------cCCcchhhHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccccccccCCChHHHHHHHHhcCc---
Confidence 1123467999999999999887654 589999999999876532111 1122222222111
Q ss_pred ecCCCceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCC
Q 047227 214 IGDGNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNM 260 (485)
Q Consensus 214 ~g~g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~ 260 (485)
...+..++|+|+++..++.... ....|+...+.++
T Consensus 214 ------~~r~~~pedva~~~~~l~s~~~------~~itG~~i~vdgg 248 (252)
T PRK06079 214 ------DGVGVTIEEVGNTAAFLLSDLS------TGVTGDIIYVDKG 248 (252)
T ss_pred ------ccCCCCHHHHHHHHHHHhCccc------ccccccEEEeCCc
Confidence 1236678999999998865211 2256777766554
|
|
| >PRK06484 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.6e-14 Score=152.74 Aligned_cols=216 Identities=20% Similarity=0.158 Sum_probs=151.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc---
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ--- 82 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 82 (485)
.++++|||||+|.||.++++.|.++| ++|.+++|....... +.... ..++..+.+|++|++++.++++
T Consensus 268 ~~k~~lItGas~gIG~~~a~~l~~~G-~~V~~~~r~~~~~~~-------~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~ 338 (520)
T PRK06484 268 SPRVVAITGGARGIGRAVADRFAAAG-DRLLIIDRDAEGAKK-------LAEAL-GDEHLSVQADITDEAAVESAFAQIQ 338 (520)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHH-------HHHHh-CCceeEEEccCCCHHHHHHHHHHHH
Confidence 56899999999999999999999999 699998876431100 11111 2456778999999998887764
Q ss_pred ----CCCEEEEcCCCCC--------CCCchhhhHHHHHHHHHHHHHHHHhc--CCCEEEEecCccccccCCCCcCCCCCC
Q 047227 83 ----GAEVVFHMAAPNS--------SINNHKLHHSVNVEGTKNVIDACAEL--KVKRLIYTSSPSVVFDGVHGIINGNEA 148 (485)
Q Consensus 83 ----~~d~Vih~aa~~~--------~~~~~~~~~~~nv~~t~~ll~a~~~~--~v~r~V~~SS~~vy~~~~~~~~~~~e~ 148 (485)
..|++||+||... +.++++..+++|+.++.++.+++... +-.++|++||...+.
T Consensus 339 ~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~------------ 406 (520)
T PRK06484 339 ARWGRLDVLVNNAGIAEVFKPSLEQSAEDFTRVYDVNLSGAFACARAAARLMSQGGVIVNLGSIASLL------------ 406 (520)
T ss_pred HHcCCCCEEEECCCCcCCCCChhhCCHHHHHHHHHhCcHHHHHHHHHHHHHhccCCEEEEECchhhcC------------
Confidence 3799999999421 12345678999999999998887764 235899999976642
Q ss_pred CCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCCh---HHHHHHHHcCCCeEEecCCCceee
Q 047227 149 LPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLLV---PSLVAAARAGKSKFIIGDGNNVYD 222 (485)
Q Consensus 149 ~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~~---~~~~~~~~~g~~~~~~g~g~~~~~ 222 (485)
+..+...|+.+|+..+.+.+.++.+ .|+++.+++||.+..+...... ........+..+ ...
T Consensus 407 ---~~~~~~~Y~asKaal~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~---------~~~ 474 (520)
T PRK06484 407 ---ALPPRNAYCASKAAVTMLSRSLACEWAPAGIRVNTVAPGYIETPAVLALKASGRADFDSIRRRIP---------LGR 474 (520)
T ss_pred ---CCCCCchhHHHHHHHHHHHHHHHHHhhhhCeEEEEEEeCCccCchhhhhccccHHHHHHHHhcCC---------CCC
Confidence 1234568999999999999887654 4799999999999876422110 111111222111 113
Q ss_pred cccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCC
Q 047227 223 FTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNM 260 (485)
Q Consensus 223 ~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~ 260 (485)
+..++|+|++++.++.... ....|+.+.+.++
T Consensus 475 ~~~~~dia~~~~~l~s~~~------~~~~G~~i~vdgg 506 (520)
T PRK06484 475 LGDPEEVAEAIAFLASPAA------SYVNGATLTVDGG 506 (520)
T ss_pred CcCHHHHHHHHHHHhCccc------cCccCcEEEECCC
Confidence 5678999999998865221 2256888888765
|
|
| >PRK05854 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.6e-14 Score=142.41 Aligned_cols=181 Identities=14% Similarity=0.049 Sum_probs=126.5
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc--
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ-- 82 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 82 (485)
.++++++||||+|.||.++++.|.++| ++|++++|+.........+ +.......++.++.+|+.|.+++.++++
T Consensus 12 l~gk~~lITGas~GIG~~~a~~La~~G-~~Vil~~R~~~~~~~~~~~---l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~ 87 (313)
T PRK05854 12 LSGKRAVVTGASDGLGLGLARRLAAAG-AEVILPVRNRAKGEAAVAA---IRTAVPDAKLSLRALDLSSLASVAALGEQL 87 (313)
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHH---HHHhCCCCceEEEEecCCCHHHHHHHHHHH
Confidence 457899999999999999999999999 6999988865421111000 1111112468899999999998877654
Q ss_pred -----CCCEEEEcCCCC------CCCCchhhhHHHHHHHHHHHHHHHHh---cCCCEEEEecCccccccCCCCcCCCCCC
Q 047227 83 -----GAEVVFHMAAPN------SSINNHKLHHSVNVEGTKNVIDACAE---LKVKRLIYTSSPSVVFDGVHGIINGNEA 148 (485)
Q Consensus 83 -----~~d~Vih~aa~~------~~~~~~~~~~~~nv~~t~~ll~a~~~---~~v~r~V~~SS~~vy~~~~~~~~~~~e~ 148 (485)
+.|++||+||.. ...+..+..+++|+.++..+.+.+.. .+..|+|++||...+..... ..+..+.
T Consensus 88 ~~~~~~iD~li~nAG~~~~~~~~~t~~~~e~~~~vN~~g~~~l~~~llp~l~~~~~riv~vsS~~~~~~~~~-~~~~~~~ 166 (313)
T PRK05854 88 RAEGRPIHLLINNAGVMTPPERQTTADGFELQFGTNHLGHFALTAHLLPLLRAGRARVTSQSSIAARRGAIN-WDDLNWE 166 (313)
T ss_pred HHhCCCccEEEECCccccCCccccCcccHHHHhhhhhHHHHHHHHHHHHHHHhCCCCeEEEechhhcCCCcC-ccccccc
Confidence 389999999932 12346677899999998877766552 23458999999765432111 1111111
Q ss_pred CCCCCCCCchHHHHHHHHHHHHHHHhC-----CCCceEEEEecCCcccC
Q 047227 149 LPYPPKHNDFYSATKAEGEALVIKANG-----TNGLLTCCIRPSSIFGP 192 (485)
Q Consensus 149 ~~~~~~~~~~Y~~sK~~~E~~~~~~~~-----~~g~~~~ilRp~~v~Gp 192 (485)
. +..+...|+.||...+.+.+.++. ..|+.+.++.||.+-.+
T Consensus 167 ~--~~~~~~~Y~~SK~a~~~~~~~la~~~~~~~~gI~v~~v~PG~v~T~ 213 (313)
T PRK05854 167 R--SYAGMRAYSQSKIAVGLFALELDRRSRAAGWGITSNLAHPGVAPTN 213 (313)
T ss_pred c--cCcchhhhHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecceeccC
Confidence 1 234567899999999999988764 25799999999998654
|
|
| >PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.3e-14 Score=136.32 Aligned_cols=195 Identities=16% Similarity=0.106 Sum_probs=134.0
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhh--hcCCCeEEEEecCC--CHHHHHHH
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEA--LRSGRAHYVSFDLR--HKAQVLQA 80 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~Dl~--d~~~l~~~ 80 (485)
.+++++|||||+|+||.++++.|+++| ++|.+++|....... +.... ....++.++.+|+. +.+++.++
T Consensus 10 ~~~k~vlItG~~g~iG~~la~~l~~~G-~~Vi~~~r~~~~~~~------~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~ 82 (247)
T PRK08945 10 LKDRIILVTGAGDGIGREAALTYARHG-ATVILLGRTEEKLEA------VYDEIEAAGGPQPAIIPLDLLTATPQNYQQL 82 (247)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCC-CcEEEEeCCHHHHHH------HHHHHHhcCCCCceEEEecccCCCHHHHHHH
Confidence 457899999999999999999999999 589999887532111 11111 11235677888886 55544444
Q ss_pred h-------cCCCEEEEcCCCCC--------CCCchhhhHHHHHHHHHHHHHHHH----hcCCCEEEEecCccccccCCCC
Q 047227 81 L-------QGAEVVFHMAAPNS--------SINNHKLHHSVNVEGTKNVIDACA----ELKVKRLIYTSSPSVVFDGVHG 141 (485)
Q Consensus 81 ~-------~~~d~Vih~aa~~~--------~~~~~~~~~~~nv~~t~~ll~a~~----~~~v~r~V~~SS~~vy~~~~~~ 141 (485)
+ ..+|+|||+|+... ..+.++..+++|+.++.++++++. +.+.+++|++||.....
T Consensus 83 ~~~~~~~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~l~~~~~~~iv~~ss~~~~~----- 157 (247)
T PRK08945 83 ADTIEEQFGRLDGVLHNAGLLGELGPMEQQDPEVWQDVMQVNVNATFMLTQALLPLLLKSPAASLVFTSSSVGRQ----- 157 (247)
T ss_pred HHHHHHHhCCCCEEEECCcccCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhCCCCEEEEEccHhhcC-----
Confidence 3 35899999998321 223456788999999888888764 45678999999965432
Q ss_pred cCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCC
Q 047227 142 IINGNEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGN 218 (485)
Q Consensus 142 ~~~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~ 218 (485)
+......|+.+|...|.+++.++.. .++++++++|+.+-++..... ....
T Consensus 158 ----------~~~~~~~Y~~sK~a~~~~~~~~~~~~~~~~i~~~~v~pg~v~t~~~~~~--------~~~~--------- 210 (247)
T PRK08945 158 ----------GRANWGAYAVSKFATEGMMQVLADEYQGTNLRVNCINPGGTRTAMRASA--------FPGE--------- 210 (247)
T ss_pred ----------CCCCCcccHHHHHHHHHHHHHHHHHhcccCEEEEEEecCCccCcchhhh--------cCcc---------
Confidence 1223457999999999998876543 478999999998765421100 0000
Q ss_pred ceeecccHHHHHHHHHHHHH
Q 047227 219 NVYDFTYVANVAHAHICAER 238 (485)
Q Consensus 219 ~~~~~i~v~D~a~a~~~~~~ 238 (485)
....+...+|++..+..++.
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~ 230 (247)
T PRK08945 211 DPQKLKTPEDIMPLYLYLMG 230 (247)
T ss_pred cccCCCCHHHHHHHHHHHhC
Confidence 11235678999999998754
|
|
| >PRK05872 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=4e-14 Score=138.46 Aligned_cols=205 Identities=20% Similarity=0.089 Sum_probs=141.4
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc--
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ-- 82 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 82 (485)
.+++++|||||+|.||.++++.|.++| ++|.+++|....... ..........+..+.+|++|.+++.++++
T Consensus 7 l~gk~vlItGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~l~~------~~~~l~~~~~~~~~~~Dv~d~~~v~~~~~~~ 79 (296)
T PRK05872 7 LAGKVVVVTGAARGIGAELARRLHARG-AKLALVDLEEAELAA------LAAELGGDDRVLTVVADVTDLAAMQAAAEEA 79 (296)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEeCCHHHHHH------HHHHhcCCCcEEEEEecCCCHHHHHHHHHHH
Confidence 457899999999999999999999999 589988886431100 01111112346667799999988877654
Q ss_pred -----CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHHHhc---CCCEEEEecCccccccCCCCcCCCCC
Q 047227 83 -----GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDACAEL---KVKRLIYTSSPSVVFDGVHGIINGNE 147 (485)
Q Consensus 83 -----~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~~~~---~v~r~V~~SS~~vy~~~~~~~~~~~e 147 (485)
+.|+|||+||... ..++.+..+++|+.++.++++++... ...++|++||...+.
T Consensus 80 ~~~~g~id~vI~nAG~~~~~~~~~~~~~~~~~~~~vn~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~----------- 148 (296)
T PRK05872 80 VERFGGIDVVVANAGIASGGSVAQVDPDAFRRVIDVNLLGVFHTVRATLPALIERRGYVLQVSSLAAFA----------- 148 (296)
T ss_pred HHHcCCCCEEEECCCcCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCEEEEEeCHhhcC-----------
Confidence 4899999999321 22345677899999999999887642 235899999976653
Q ss_pred CCCCCCCCCchHHHHHHHHHHHHHHHhC---CCCceEEEEecCCcccCCCCCChH--HHHHHHHcCCCeEEecCCCceee
Q 047227 148 ALPYPPKHNDFYSATKAEGEALVIKANG---TNGLLTCCIRPSSIFGPGDRLLVP--SLVAAARAGKSKFIIGDGNNVYD 222 (485)
Q Consensus 148 ~~~~~~~~~~~Y~~sK~~~E~~~~~~~~---~~g~~~~ilRp~~v~Gp~~~~~~~--~~~~~~~~g~~~~~~g~g~~~~~ 222 (485)
+......|+.+|...+.+.+.++. ..|+.+.++.|+.+..+....... ..........+. ....
T Consensus 149 ----~~~~~~~Y~asKaal~~~~~~l~~e~~~~gi~v~~v~Pg~v~T~~~~~~~~~~~~~~~~~~~~~~-------p~~~ 217 (296)
T PRK05872 149 ----AAPGMAAYCASKAGVEAFANALRLEVAHHGVTVGSAYLSWIDTDLVRDADADLPAFRELRARLPW-------PLRR 217 (296)
T ss_pred ----CCCCchHHHHHHHHHHHHHHHHHHHHHHHCcEEEEEecCcccchhhhhccccchhHHHHHhhCCC-------cccC
Confidence 123456899999999999887753 358999999999987653221110 111111111110 1224
Q ss_pred cccHHHHHHHHHHHHH
Q 047227 223 FTYVANVAHAHICAER 238 (485)
Q Consensus 223 ~i~v~D~a~a~~~~~~ 238 (485)
++..+|+|++++.++.
T Consensus 218 ~~~~~~va~~i~~~~~ 233 (296)
T PRK05872 218 TTSVEKCAAAFVDGIE 233 (296)
T ss_pred CCCHHHHHHHHHHHHh
Confidence 6679999999998865
|
|
| >PRK06125 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=8.2e-14 Score=133.56 Aligned_cols=221 Identities=13% Similarity=0.064 Sum_probs=147.9
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhc---CCCeEEEEecCCCHHHHHHH
Q 047227 4 EENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALR---SGRAHYVSFDLRHKAQVLQA 80 (485)
Q Consensus 4 ~~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~Dl~d~~~l~~~ 80 (485)
..++++++||||+|.+|.++++.|.++| ++|.+++|....... ....+. ..++.++.+|++|++++.++
T Consensus 4 ~~~~k~vlItG~~~giG~~ia~~l~~~G-~~V~~~~r~~~~~~~-------~~~~l~~~~~~~~~~~~~D~~~~~~~~~~ 75 (259)
T PRK06125 4 HLAGKRVLITGASKGIGAAAAEAFAAEG-CHLHLVARDADALEA-------LAADLRAAHGVDVAVHALDLSSPEAREQL 75 (259)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHcC-CEEEEEeCCHHHHHH-------HHHHHHhhcCCceEEEEecCCCHHHHHHH
Confidence 3456899999999999999999999999 599999886432111 111111 34678899999999988887
Q ss_pred hc---CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHH----HhcCCCEEEEecCccccccCCCCcCCCC
Q 047227 81 LQ---GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDAC----AELKVKRLIYTSSPSVVFDGVHGIINGN 146 (485)
Q Consensus 81 ~~---~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~----~~~~v~r~V~~SS~~vy~~~~~~~~~~~ 146 (485)
++ ++|.+||+++... ..+++...+++|+.++..+.+++ ++.+..++|++||.....
T Consensus 76 ~~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~iss~~~~~---------- 145 (259)
T PRK06125 76 AAEAGDIDILVNNAGAIPGGGLDDVDDAAWRAGWELKVFGYIDLTRLAYPRMKARGSGVIVNVIGAAGEN---------- 145 (259)
T ss_pred HHHhCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEecCccccC----------
Confidence 75 4899999999321 22345677899999998888876 344445899998853320
Q ss_pred CCCCCCCCCCchHHHHHHHHHHHHHHHhC---CCCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecC-------
Q 047227 147 EALPYPPKHNDFYSATKAEGEALVIKANG---TNGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGD------- 216 (485)
Q Consensus 147 e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~---~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~------- 216 (485)
+......|+.+|...+.+.+.++. ..|+++..+.||.+..+.. ..+... .++. .+++
T Consensus 146 -----~~~~~~~y~ask~al~~~~~~la~e~~~~gi~v~~i~PG~v~t~~~----~~~~~~--~~~~--~~~~~~~~~~~ 212 (259)
T PRK06125 146 -----PDADYICGSAGNAALMAFTRALGGKSLDDGVRVVGVNPGPVATDRM----LTLLKG--RARA--ELGDESRWQEL 212 (259)
T ss_pred -----CCCCchHhHHHHHHHHHHHHHHHHHhCccCeEEEEEecCccccHHH----HHHHHh--hhhc--ccCCHHHHHHH
Confidence 123345789999999999887653 4689999999998876521 111100 0000 0000
Q ss_pred --CCceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCC
Q 047227 217 --GNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNME 261 (485)
Q Consensus 217 --g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~ 261 (485)
......+..++|+|++++.++.... ....|..+.+.++.
T Consensus 213 ~~~~~~~~~~~~~~va~~~~~l~~~~~------~~~~G~~i~vdgg~ 253 (259)
T PRK06125 213 LAGLPLGRPATPEEVADLVAFLASPRS------GYTSGTVVTVDGGI 253 (259)
T ss_pred hccCCcCCCcCHHHHHHHHHHHcCchh------ccccCceEEecCCe
Confidence 0011236689999999988754211 12567777776653
|
|
| >TIGR02685 pter_reduc_Leis pteridine reductase | Back alignment and domain information |
|---|
Probab=99.59 E-value=6.1e-14 Score=135.10 Aligned_cols=217 Identities=17% Similarity=0.082 Sum_probs=139.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhh---cCCCeEEEEecCCCHHHH----HHH
Q 047227 8 RLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEAL---RSGRAHYVSFDLRHKAQV----LQA 80 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~Dl~d~~~l----~~~ 80 (485)
+.++||||+|+||+++++.|+++| ++|.++.+....... . +.+.+ ...++.++.+|++|.+++ .++
T Consensus 2 ~~~lITGas~gIG~~~a~~l~~~G-~~V~~~~~~~~~~~~---~---~~~~l~~~~~~~~~~~~~Dv~d~~~~~~~~~~~ 74 (267)
T TIGR02685 2 PAAVVTGAAKRIGSSIAVALHQEG-YRVVLHYHRSAAAAS---T---LAAELNARRPNSAVTCQADLSNSATLFSRCEAI 74 (267)
T ss_pred CEEEEeCCCCcHHHHHHHHHHhCC-CeEEEEcCCcHHHHH---H---HHHHHHhccCCceEEEEccCCCchhhHHHHHHH
Confidence 479999999999999999999999 588877554221110 0 11111 123566789999998644 333
Q ss_pred h-------cCCCEEEEcCCCCC-------CCC-----------chhhhHHHHHHHHHHHHHHHHhcC----------CCE
Q 047227 81 L-------QGAEVVFHMAAPNS-------SIN-----------NHKLHHSVNVEGTKNVIDACAELK----------VKR 125 (485)
Q Consensus 81 ~-------~~~d~Vih~aa~~~-------~~~-----------~~~~~~~~nv~~t~~ll~a~~~~~----------v~r 125 (485)
+ .++|+|||+||... ... +....+++|+.++..+.+++.... ..+
T Consensus 75 ~~~~~~~~g~iD~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 154 (267)
T TIGR02685 75 IDACFRAFGRCDVLVNNASAFYPTPLLRGDAGEGVGDKKSLEVQVAELFGSNAIAPYFLIKAFAQRQAGTRAEQRSTNLS 154 (267)
T ss_pred HHHHHHccCCceEEEECCccCCCCcccccccccccccchhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhcccccCCCCeE
Confidence 3 24899999999321 111 134678999999999988765321 135
Q ss_pred EEEecCccccccCCCCcCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCChHHHH
Q 047227 126 LIYTSSPSVVFDGVHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLLVPSLV 202 (485)
Q Consensus 126 ~V~~SS~~vy~~~~~~~~~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~~~~~~ 202 (485)
+|++||..... +..+...|+.+|...|.+.+.++.+ .|+++++++||.+..|.+.. ....
T Consensus 155 iv~~~s~~~~~---------------~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~~~~~~~~~--~~~~ 217 (267)
T TIGR02685 155 IVNLCDAMTDQ---------------PLLGFTMYTMAKHALEGLTRSAALELAPLQIRVNGVAPGLSLLPDAMP--FEVQ 217 (267)
T ss_pred EEEehhhhccC---------------CCcccchhHHHHHHHHHHHHHHHHHHhhhCeEEEEEecCCccCccccc--hhHH
Confidence 77777643210 2345668999999999999987654 68999999999987663211 1112
Q ss_pred HHHHcCCCeEEecCCCceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCCC
Q 047227 203 AAARAGKSKFIIGDGNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMES 262 (485)
Q Consensus 203 ~~~~~g~~~~~~g~g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~ 262 (485)
.......+ . + ......+|++.+++.++..... ...|+.+.+.++..
T Consensus 218 ~~~~~~~~--~---~---~~~~~~~~va~~~~~l~~~~~~------~~~G~~~~v~gg~~ 263 (267)
T TIGR02685 218 EDYRRKVP--L---G---QREASAEQIADVVIFLVSPKAK------YITGTCIKVDGGLS 263 (267)
T ss_pred HHHHHhCC--C---C---cCCCCHHHHHHHHHHHhCcccC------CcccceEEECCcee
Confidence 22221111 0 0 1245789999999988653211 25677888876543
|
Pteridine reductase is an enzyme used by trypanosomatids (including Trypanosoma cruzi and Leishmania major) to obtain reduced pteridines by salvage rather than biosynthetic pathways. Enzymes in T. cruzi described as pteridine reductase 1 (PTR1) and pteridine reductase 2 (PTR2) have different activity profiles. PTR1 is more active with with fully oxidized biopterin and folate than with reduced forms, while PTR2 reduces dihydrobiopterin and dihydrofolate but not oxidized pteridines. T. cruzi PTR1 and PTR2 are more similar to each other in sequence than either is to the pteridine reductase of Leishmania major, and all are included in this family. |
| >COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.5e-13 Score=125.12 Aligned_cols=200 Identities=18% Similarity=0.177 Sum_probs=142.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc---
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ--- 82 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 82 (485)
++|.++|||+|+-||.++++.|.+.| ++|.+..|....- ++ +...+....+..+..|++|++++.++++
T Consensus 5 ~~kv~lITGASSGiG~A~A~~l~~~G-~~vvl~aRR~drL----~~---la~~~~~~~~~~~~~DVtD~~~~~~~i~~~~ 76 (246)
T COG4221 5 KGKVALITGASSGIGEATARALAEAG-AKVVLAARREERL----EA---LADEIGAGAALALALDVTDRAAVEAAIEALP 76 (246)
T ss_pred CCcEEEEecCcchHHHHHHHHHHHCC-CeEEEEeccHHHH----HH---HHHhhccCceEEEeeccCCHHHHHHHHHHHH
Confidence 45889999999999999999999999 6999988875421 11 2222323568899999999988666553
Q ss_pred ----CCCEEEEcCCCC-------CCCCchhhhHHHHHHHHHHHHHHH----HhcCCCEEEEecCccccccCCCCcCCCCC
Q 047227 83 ----GAEVVFHMAAPN-------SSINNHKLHHSVNVEGTKNVIDAC----AELKVKRLIYTSSPSVVFDGVHGIINGNE 147 (485)
Q Consensus 83 ----~~d~Vih~aa~~-------~~~~~~~~~~~~nv~~t~~ll~a~----~~~~v~r~V~~SS~~vy~~~~~~~~~~~e 147 (485)
+.|++||+||.. ...++++..+++|+.|..+...+. .+.+..++|.+||...-.
T Consensus 77 ~~~g~iDiLvNNAGl~~g~~~~~~~~~dw~~Mid~Ni~G~l~~~~avLP~m~~r~~G~IiN~~SiAG~~----------- 145 (246)
T COG4221 77 EEFGRIDILVNNAGLALGDPLDEADLDDWDRMIDTNVKGLLNGTRAVLPGMVERKSGHIINLGSIAGRY----------- 145 (246)
T ss_pred HhhCcccEEEecCCCCcCChhhhCCHHHHHHHHHHHHHHHHHHHHHhhhHHHhcCCceEEEeccccccc-----------
Confidence 489999999922 233478899999999988887764 455556999999976421
Q ss_pred CCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCC-ChH---HHHHHHHcCCCeEEecCCCce
Q 047227 148 ALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRL-LVP---SLVAAARAGKSKFIIGDGNNV 220 (485)
Q Consensus 148 ~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~-~~~---~~~~~~~~g~~~~~~g~g~~~ 220 (485)
+....+.|+.+|+....+...+..+ .+++++.+-||.+-...... ... ........ .
T Consensus 146 ----~y~~~~vY~ATK~aV~~fs~~LR~e~~g~~IRVt~I~PG~v~~~~~s~v~~~g~~~~~~~~y~------------~ 209 (246)
T COG4221 146 ----PYPGGAVYGATKAAVRAFSLGLRQELAGTGIRVTVISPGLVETTEFSTVRFEGDDERADKVYK------------G 209 (246)
T ss_pred ----cCCCCccchhhHHHHHHHHHHHHHHhcCCCeeEEEecCceecceecccccCCchhhhHHHHhc------------c
Confidence 2345578999999998887766544 47999999999884431110 000 01111111 1
Q ss_pred eecccHHHHHHHHHHHHHHh
Q 047227 221 YDFTYVANVAHAHICAERAL 240 (485)
Q Consensus 221 ~~~i~v~D~a~a~~~~~~~~ 240 (485)
...+..+|+|+++..+..++
T Consensus 210 ~~~l~p~dIA~~V~~~~~~P 229 (246)
T COG4221 210 GTALTPEDIAEAVLFAATQP 229 (246)
T ss_pred CCCCCHHHHHHHHHHHHhCC
Confidence 24678999999999998853
|
|
| >PRK08340 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=5.2e-14 Score=134.96 Aligned_cols=217 Identities=16% Similarity=0.067 Sum_probs=141.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc-----
Q 047227 8 RLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ----- 82 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~----- 82 (485)
|++|||||+|.||+++++.|.++| ++|.+++|....... .........++.++.+|++|++++.++++
T Consensus 1 m~vlItGas~gIG~aia~~l~~~G-~~V~~~~r~~~~~~~------~~~~l~~~~~~~~~~~Dv~d~~~~~~~~~~~~~~ 73 (259)
T PRK08340 1 MNVLVTASSRGIGFNVARELLKKG-ARVVISSRNEENLEK------ALKELKEYGEVYAVKADLSDKDDLKNLVKEAWEL 73 (259)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHcC-CEEEEEeCCHHHHHH------HHHHHHhcCCceEEEcCCCCHHHHHHHHHHHHHh
Confidence 589999999999999999999999 689988876431110 11111112467889999999998887764
Q ss_pred --CCCEEEEcCCCCC---------CCCchhhhHHHHHHHHHHHHH----HHH-hcCCCEEEEecCccccccCCCCcCCCC
Q 047227 83 --GAEVVFHMAAPNS---------SINNHKLHHSVNVEGTKNVID----ACA-ELKVKRLIYTSSPSVVFDGVHGIINGN 146 (485)
Q Consensus 83 --~~d~Vih~aa~~~---------~~~~~~~~~~~nv~~t~~ll~----a~~-~~~v~r~V~~SS~~vy~~~~~~~~~~~ 146 (485)
+.|+|||+||... ...++...+.+|+.++..+.. .+. +.+..++|++||.....
T Consensus 74 ~g~id~li~naG~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~~g~iv~isS~~~~~---------- 143 (259)
T PRK08340 74 LGGIDALVWNAGNVRCEPCMLHEAGYSDWLEAALLHLVAPGYLTTLLIQAWLEKKMKGVLVYLSSVSVKE---------- 143 (259)
T ss_pred cCCCCEEEECCCCCCCCccccccccHHHHHHHHhhcchHHHHHHHHHHHHHHhcCCCCEEEEEeCcccCC----------
Confidence 4899999999421 111233456677766554433 333 23456899999976541
Q ss_pred CCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCChHHH------------HHHHHcCCCe
Q 047227 147 EALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLLVPSL------------VAAARAGKSK 211 (485)
Q Consensus 147 e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~~~~~------------~~~~~~g~~~ 211 (485)
+..+...|+.+|...+.+.+.++.+ .|+++..+.||.+-.+..+..+... .......
T Consensus 144 -----~~~~~~~y~~sKaa~~~~~~~la~e~~~~gI~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 215 (259)
T PRK08340 144 -----PMPPLVLADVTRAGLVQLAKGVSRTYGGKGIRAYTVLLGSFDTPGARENLARIAEERGVSFEETWEREVLER--- 215 (259)
T ss_pred -----CCCCchHHHHHHHHHHHHHHHHHHHhCCCCEEEEEeccCcccCccHHHHHHhhhhccCCchHHHHHHHHhcc---
Confidence 1234568999999999999887754 5799999999988665321111100 0011110
Q ss_pred EEecCCCceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCC
Q 047227 212 FIIGDGNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNME 261 (485)
Q Consensus 212 ~~~g~g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~ 261 (485)
.....+..++|+|+++..++.... .-..|+...+.++.
T Consensus 216 ------~p~~r~~~p~dva~~~~fL~s~~~------~~itG~~i~vdgg~ 253 (259)
T PRK08340 216 ------TPLKRTGRWEELGSLIAFLLSENA------EYMLGSTIVFDGAM 253 (259)
T ss_pred ------CCccCCCCHHHHHHHHHHHcCccc------ccccCceEeecCCc
Confidence 112236678999999988765221 22567777776653
|
|
| >PRK07832 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=5.1e-14 Score=136.02 Aligned_cols=199 Identities=16% Similarity=0.108 Sum_probs=134.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhh--cCCCeEEEEecCCCHHHHHHHhc---
Q 047227 8 RLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEAL--RSGRAHYVSFDLRHKAQVLQALQ--- 82 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~Dl~d~~~l~~~~~--- 82 (485)
|+++||||+|.||.++++.|.++| +.|.+++|+..... . ...... ....+.++.+|+.|++++.++++
T Consensus 1 k~vlItGas~giG~~la~~la~~G-~~vv~~~r~~~~~~----~--~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 73 (272)
T PRK07832 1 KRCFVTGAASGIGRATALRLAAQG-AELFLTDRDADGLA----Q--TVADARALGGTVPEHRALDISDYDAVAAFAADIH 73 (272)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHH----H--HHHHHHhcCCCcceEEEeeCCCHHHHHHHHHHHH
Confidence 479999999999999999999999 58888887643110 0 011111 11234567899999988776654
Q ss_pred ----CCCEEEEcCCCC-------CCCCchhhhHHHHHHHHHHHHHHHHh----c-CCCEEEEecCccccccCCCCcCCCC
Q 047227 83 ----GAEVVFHMAAPN-------SSINNHKLHHSVNVEGTKNVIDACAE----L-KVKRLIYTSSPSVVFDGVHGIINGN 146 (485)
Q Consensus 83 ----~~d~Vih~aa~~-------~~~~~~~~~~~~nv~~t~~ll~a~~~----~-~v~r~V~~SS~~vy~~~~~~~~~~~ 146 (485)
++|+|||++|.. .+.++++..+++|+.++.++++++.. . ...++|++||...+.
T Consensus 74 ~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~g~ii~isS~~~~~---------- 143 (272)
T PRK07832 74 AAHGSMDVVMNIAGISAWGTVDRLTHEQWRRMVDVNLMGPIHVIETFVPPMVAAGRGGHLVNVSSAAGLV---------- 143 (272)
T ss_pred HhcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEEccccccC----------
Confidence 379999999832 12334577899999999999998642 2 246899999965431
Q ss_pred CCCCCCCCCCchHHHHHHHHHHHHHHHh---CCCCceEEEEecCCcccCCCCCCh-------HHHHHHHHcCCCeEEecC
Q 047227 147 EALPYPPKHNDFYSATKAEGEALVIKAN---GTNGLLTCCIRPSSIFGPGDRLLV-------PSLVAAARAGKSKFIIGD 216 (485)
Q Consensus 147 e~~~~~~~~~~~Y~~sK~~~E~~~~~~~---~~~g~~~~ilRp~~v~Gp~~~~~~-------~~~~~~~~~g~~~~~~g~ 216 (485)
+......|+.+|...+.+.+.++ ..+++++++++||.+.++.....- .........
T Consensus 144 -----~~~~~~~Y~~sK~a~~~~~~~l~~e~~~~~i~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~--------- 209 (272)
T PRK07832 144 -----ALPWHAAYSASKFGLRGLSEVLRFDLARHGIGVSVVVPGAVKTPLVNTVEIAGVDREDPRVQKWVD--------- 209 (272)
T ss_pred -----CCCCCcchHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccCcchhcccccccCcchhhHHHHHH---------
Confidence 11234579999998887776655 246899999999999887422110 000000000
Q ss_pred CCceeecccHHHHHHHHHHHHH
Q 047227 217 GNNVYDFTYVANVAHAHICAER 238 (485)
Q Consensus 217 g~~~~~~i~v~D~a~a~~~~~~ 238 (485)
......+..+|+|++++.+++
T Consensus 210 -~~~~~~~~~~~vA~~~~~~~~ 230 (272)
T PRK07832 210 -RFRGHAVTPEKAAEKILAGVE 230 (272)
T ss_pred -hcccCCCCHHHHHHHHHHHHh
Confidence 011235789999999998875
|
|
| >PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.1e-13 Score=130.46 Aligned_cols=223 Identities=17% Similarity=0.073 Sum_probs=143.5
Q ss_pred CCCCCEEEEEcCCC--chHHHHHHHHHhcCCceEEEeecCCccc-c--CC-ccchhhhhhhhc--CCCeEEEEecCCCHH
Q 047227 4 EENERLCVVTGGRG--FAARHLVEMLIRYDMFSVRIADLSDSIA-L--EP-HEEQGILGEALR--SGRAHYVSFDLRHKA 75 (485)
Q Consensus 4 ~~~~~~iLVtGgtG--~iG~~l~~~Ll~~G~~~V~~~~r~~~~~-~--~~-~~~~~~~~~~~~--~~~v~~~~~Dl~d~~ 75 (485)
..+++++|||||+| .||.++++.|+++| +.|.+.++..... . .. ..+.......+. ..++.++.+|++|.+
T Consensus 3 ~l~~k~vlVtGas~~~giG~~~a~~l~~~G-~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~ 81 (256)
T PRK12859 3 QLKNKVAVVTGVSRLDGIGAAICKELAEAG-ADIFFTYWTAYDKEMPWGVDQDEQIQLQEELLKNGVKVSSMELDLTQND 81 (256)
T ss_pred CcCCcEEEEECCCCCCChHHHHHHHHHHCC-CeEEEEecccccccccccccHHHHHHHHHHHHhcCCeEEEEEcCCCCHH
Confidence 45678999999995 79999999999999 5887775432110 0 00 000000111111 246788999999999
Q ss_pred HHHHHhc-------CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHH----HhcCCCEEEEecCcccccc
Q 047227 76 QVLQALQ-------GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDAC----AELKVKRLIYTSSPSVVFD 137 (485)
Q Consensus 76 ~l~~~~~-------~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~----~~~~v~r~V~~SS~~vy~~ 137 (485)
++.++++ ..|+|||+|+... +.++.+..+++|+.++..+..++ ++.+-.++|++||.....
T Consensus 82 ~i~~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~- 160 (256)
T PRK12859 82 APKELLNKVTEQLGYPHILVNNAAYSTNNDFSNLTAEELDKHYMVNVRATTLLSSQFARGFDKKSGGRIINMTSGQFQG- 160 (256)
T ss_pred HHHHHHHHHHHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCeEEEEEcccccCC-
Confidence 8887764 2799999999321 12245567899999988885443 333446999999965431
Q ss_pred CCCCcCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEe
Q 047227 138 GVHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFII 214 (485)
Q Consensus 138 ~~~~~~~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~ 214 (485)
+..+...|+.+|...+.+.+.++.+ .+++++.++|+.+-.+... ...........+
T Consensus 161 --------------~~~~~~~Y~~sK~a~~~l~~~la~~~~~~~i~v~~v~PG~i~t~~~~---~~~~~~~~~~~~---- 219 (256)
T PRK12859 161 --------------PMVGELAYAATKGAIDALTSSLAAEVAHLGITVNAINPGPTDTGWMT---EEIKQGLLPMFP---- 219 (256)
T ss_pred --------------CCCCchHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEEEccccCCCCC---HHHHHHHHhcCC----
Confidence 2335678999999999998887643 5899999999998655321 111111111111
Q ss_pred cCCCceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCC
Q 047227 215 GDGNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNM 260 (485)
Q Consensus 215 g~g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~ 260 (485)
...+...+|+|+++..++.... ....|+.+.+.++
T Consensus 220 -----~~~~~~~~d~a~~~~~l~s~~~------~~~~G~~i~~dgg 254 (256)
T PRK12859 220 -----FGRIGEPKDAARLIKFLASEEA------EWITGQIIHSEGG 254 (256)
T ss_pred -----CCCCcCHHHHHHHHHHHhCccc------cCccCcEEEeCCC
Confidence 1224568999999987754211 1245666665543
|
|
| >PRK07578 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=8.7e-14 Score=127.88 Aligned_cols=184 Identities=18% Similarity=0.153 Sum_probs=133.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc---CC
Q 047227 8 RLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ---GA 84 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~---~~ 84 (485)
|+++||||+|.||.++++.|.++ ++|.+.+|... .+.+|+.|++++.++++ ++
T Consensus 1 ~~vlItGas~giG~~la~~l~~~--~~vi~~~r~~~----------------------~~~~D~~~~~~~~~~~~~~~~i 56 (199)
T PRK07578 1 MKILVIGASGTIGRAVVAELSKR--HEVITAGRSSG----------------------DVQVDITDPASIRALFEKVGKV 56 (199)
T ss_pred CeEEEEcCCcHHHHHHHHHHHhc--CcEEEEecCCC----------------------ceEecCCChHHHHHHHHhcCCC
Confidence 57999999999999999999988 58888876531 36799999999988876 58
Q ss_pred CEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHHHhc--CCCEEEEecCccccccCCCCcCCCCCCCCCCCCC
Q 047227 85 EVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDACAEL--KVKRLIYTSSPSVVFDGVHGIINGNEALPYPPKH 155 (485)
Q Consensus 85 d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~~~~--~v~r~V~~SS~~vy~~~~~~~~~~~e~~~~~~~~ 155 (485)
|+|||+||... ..+++...+++|+.++.++.+++... +..+++++||..... +...
T Consensus 57 d~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~iss~~~~~---------------~~~~ 121 (199)
T PRK07578 57 DAVVSAAGKVHFAPLAEMTDEDFNVGLQSKLMGQVNLVLIGQHYLNDGGSFTLTSGILSDE---------------PIPG 121 (199)
T ss_pred CEEEECCCCCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEcccccCC---------------CCCC
Confidence 99999999321 22345667899999999999987653 235799999854321 1234
Q ss_pred CchHHHHHHHHHHHHHHHhCC--CCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCceeecccHHHHHHHH
Q 047227 156 NDFYSATKAEGEALVIKANGT--NGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAH 233 (485)
Q Consensus 156 ~~~Y~~sK~~~E~~~~~~~~~--~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~D~a~a~ 233 (485)
...|+.+|...+.+.+.++.+ .|+++..++|+.+-.+. .. .+.. .. + ..++.++|+|+++
T Consensus 122 ~~~Y~~sK~a~~~~~~~la~e~~~gi~v~~i~Pg~v~t~~-----~~------~~~~--~~--~---~~~~~~~~~a~~~ 183 (199)
T PRK07578 122 GASAATVNGALEGFVKAAALELPRGIRINVVSPTVLTESL-----EK------YGPF--FP--G---FEPVPAARVALAY 183 (199)
T ss_pred chHHHHHHHHHHHHHHHHHHHccCCeEEEEEcCCcccCch-----hh------hhhc--CC--C---CCCCCHHHHHHHH
Confidence 568999999999998877653 58999999999874331 10 0110 11 1 2367899999998
Q ss_pred HHHHHHhccccchhhccCCcEEEe
Q 047227 234 ICAERALASEVTVAEKAAGQAYFV 257 (485)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~g~~ynv 257 (485)
..+++. ...|++|++
T Consensus 184 ~~~~~~---------~~~g~~~~~ 198 (199)
T PRK07578 184 VRSVEG---------AQTGEVYKV 198 (199)
T ss_pred HHHhcc---------ceeeEEecc
Confidence 887652 145666665
|
|
| >PRK06940 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=9.5e-14 Score=134.34 Aligned_cols=229 Identities=16% Similarity=0.097 Sum_probs=145.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhc--CCCeEEEEecCCCHHHHHHHhc--
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALR--SGRAHYVSFDLRHKAQVLQALQ-- 82 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~Dl~d~~~l~~~~~-- 82 (485)
++.++|||+ |.||+++++.|. +| ++|.+++|..... ++ ....+. ..++.++.+|++|++++.++++
T Consensus 2 ~k~~lItGa-~gIG~~la~~l~-~G-~~Vv~~~r~~~~~----~~---~~~~l~~~~~~~~~~~~Dv~d~~~i~~~~~~~ 71 (275)
T PRK06940 2 KEVVVVIGA-GGIGQAIARRVG-AG-KKVLLADYNEENL----EA---AAKTLREAGFDVSTQEVDVSSRESVKALAATA 71 (275)
T ss_pred CCEEEEECC-ChHHHHHHHHHh-CC-CEEEEEeCCHHHH----HH---HHHHHHhcCCeEEEEEeecCCHHHHHHHHHHH
Confidence 467899997 789999999996 79 6899998864311 00 111111 2367889999999998887764
Q ss_pred ----CCCEEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhc--CCCEEEEecCccccccCC-C----CcC---CCCC-
Q 047227 83 ----GAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAEL--KVKRLIYTSSPSVVFDGV-H----GII---NGNE- 147 (485)
Q Consensus 83 ----~~d~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~--~v~r~V~~SS~~vy~~~~-~----~~~---~~~e- 147 (485)
++|++||+||......++..++++|+.++.++++++... .-.+.|++||........ . ... +.++
T Consensus 72 ~~~g~id~li~nAG~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~iv~isS~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (275)
T PRK06940 72 QTLGPVTGLVHTAGVSPSQASPEAILKVDLYGTALVLEEFGKVIAPGGAGVVIASQSGHRLPALTAEQERALATTPTEEL 151 (275)
T ss_pred HhcCCCCEEEECCCcCCchhhHHHHHHHhhHHHHHHHHHHHHHHhhCCCEEEEEecccccCcccchhhhccccccccccc
Confidence 489999999965455678899999999999999988754 113456677654432110 0 000 0000
Q ss_pred -CCCC--CC---CCCchHHHHHHHHHHHHHHHhC---CCCceEEEEecCCcccCCCCCCh----HHHHHHHHcCCCeEEe
Q 047227 148 -ALPY--PP---KHNDFYSATKAEGEALVIKANG---TNGLLTCCIRPSSIFGPGDRLLV----PSLVAAARAGKSKFII 214 (485)
Q Consensus 148 -~~~~--~~---~~~~~Y~~sK~~~E~~~~~~~~---~~g~~~~ilRp~~v~Gp~~~~~~----~~~~~~~~~g~~~~~~ 214 (485)
..+. +. .+...|+.||+..+.+.+.++. ..|+++.++.||.+-.+.....+ ......+....
T Consensus 152 ~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~gIrvn~i~PG~v~T~~~~~~~~~~~~~~~~~~~~~~----- 226 (275)
T PRK06940 152 LSLPFLQPDAIEDSLHAYQIAKRANALRVMAEAVKWGERGARINSISPGIISTPLAQDELNGPRGDGYRNMFAKS----- 226 (275)
T ss_pred cccccccccccCCccchhHHHHHHHHHHHHHHHHHHccCCeEEEEeccCcCcCccchhhhcCCchHHHHHHhhhC-----
Confidence 0000 00 2356799999999988876543 35899999999998766321111 11111111111
Q ss_pred cCCCceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCC
Q 047227 215 GDGNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNM 260 (485)
Q Consensus 215 g~g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~ 260 (485)
....+...+|+|+++..++.... .-..|+.+.+.++
T Consensus 227 ----p~~r~~~peeia~~~~fL~s~~~------~~itG~~i~vdgg 262 (275)
T PRK06940 227 ----PAGRPGTPDEIAALAEFLMGPRG------SFITGSDFLVDGG 262 (275)
T ss_pred ----CcccCCCHHHHHHHHHHHcCccc------CcccCceEEEcCC
Confidence 11236778999999888754211 2256777777655
|
|
| >PRK05884 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.1e-13 Score=129.57 Aligned_cols=196 Identities=15% Similarity=0.119 Sum_probs=139.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc----C
Q 047227 8 RLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ----G 83 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~----~ 83 (485)
|+++||||+|.||+++++.|.++| ++|++.+|.... +.......+++++.+|+.|++++.++++ +
T Consensus 1 m~vlItGas~giG~~ia~~l~~~g-~~v~~~~r~~~~----------~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~ 69 (223)
T PRK05884 1 VEVLVTGGDTDLGRTIAEGFRNDG-HKVTLVGARRDD----------LEVAAKELDVDAIVCDNTDPASLEEARGLFPHH 69 (223)
T ss_pred CeEEEEeCCchHHHHHHHHHHHCC-CEEEEEeCCHHH----------HHHHHHhccCcEEecCCCCHHHHHHHHHHHhhc
Confidence 479999999999999999999999 689988876431 1111111246788999999998888775 4
Q ss_pred CCEEEEcCCCCC------------CCCchhhhHHHHHHHHHHHHHHHHhc--CCCEEEEecCccccccCCCCcCCCCCCC
Q 047227 84 AEVVFHMAAPNS------------SINNHKLHHSVNVEGTKNVIDACAEL--KVKRLIYTSSPSVVFDGVHGIINGNEAL 149 (485)
Q Consensus 84 ~d~Vih~aa~~~------------~~~~~~~~~~~nv~~t~~ll~a~~~~--~v~r~V~~SS~~vy~~~~~~~~~~~e~~ 149 (485)
+|++||+++... ..+++...+++|+.++.++++++... .-.++|++||...
T Consensus 70 id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~g~Iv~isS~~~--------------- 134 (223)
T PRK05884 70 LDTIVNVPAPSWDAGDPRTYSLADTANAWRNALDATVLSAVLTVQSVGDHLRSGGSIISVVPENP--------------- 134 (223)
T ss_pred CcEEEECCCccccCCCCcccchhcCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCeEEEEecCCC---------------
Confidence 899999987311 12356678999999999999887652 1258999998530
Q ss_pred CCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCceeecccH
Q 047227 150 PYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFTYV 226 (485)
Q Consensus 150 ~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v 226 (485)
.....|+.+|+..+.+.+.++.+ .|+++..+.||.+..+. .... . . . +.-.+
T Consensus 135 ----~~~~~Y~asKaal~~~~~~la~e~~~~gI~v~~v~PG~v~t~~--------~~~~-~-~------~-----p~~~~ 189 (223)
T PRK05884 135 ----PAGSAEAAIKAALSNWTAGQAAVFGTRGITINAVACGRSVQPG--------YDGL-S-R------T-----PPPVA 189 (223)
T ss_pred ----CCccccHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCccCchh--------hhhc-c-C------C-----CCCCH
Confidence 12357999999999998877653 57999999999986442 0000 0 0 0 11268
Q ss_pred HHHHHHHHHHHHHhccccchhhccCCcEEEeeCC
Q 047227 227 ANVAHAHICAERALASEVTVAEKAAGQAYFVTNM 260 (485)
Q Consensus 227 ~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~ 260 (485)
+|+++++..++.... .-..|+.+.+.++
T Consensus 190 ~~ia~~~~~l~s~~~------~~v~G~~i~vdgg 217 (223)
T PRK05884 190 AEIARLALFLTTPAA------RHITGQTLHVSHG 217 (223)
T ss_pred HHHHHHHHHHcCchh------hccCCcEEEeCCC
Confidence 999999988754211 2256777777654
|
|
| >PRK07791 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.1e-13 Score=134.80 Aligned_cols=224 Identities=20% Similarity=0.168 Sum_probs=145.7
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCcccc---CCccchhhhhhhh-cCCCeEEEEecCCCHHHHHH
Q 047227 4 EENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIAL---EPHEEQGILGEAL-RSGRAHYVSFDLRHKAQVLQ 79 (485)
Q Consensus 4 ~~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~---~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~ 79 (485)
..+++++|||||++.||.++++.|.++| ++|.++++..+... ............. ...++..+.+|++|.+++.+
T Consensus 3 ~l~~k~~lITGas~GIG~aia~~la~~G-~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~ 81 (286)
T PRK07791 3 LLDGRVVIVTGAGGGIGRAHALAFAAEG-ARVVVNDIGVGLDGSASGGSAAQAVVDEIVAAGGEAVANGDDIADWDGAAN 81 (286)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCC-CEEEEeeCCccccccccchhHHHHHHHHHHhcCCceEEEeCCCCCHHHHHH
Confidence 3567899999999999999999999999 58888876541100 0000000111111 13457788999999988777
Q ss_pred Hhc-------CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHHHh----c---C---CCEEEEecCcccc
Q 047227 80 ALQ-------GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDACAE----L---K---VKRLIYTSSPSVV 135 (485)
Q Consensus 80 ~~~-------~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~~~----~---~---v~r~V~~SS~~vy 135 (485)
+++ +.|++||+||... ..++++..+++|+.++..+.+++.. . + ..++|++||.+.+
T Consensus 82 ~~~~~~~~~g~id~lv~nAG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~Iv~isS~~~~ 161 (286)
T PRK07791 82 LVDAAVETFGGLDVLVNNAGILRDRMIANMSEEEWDAVIAVHLKGHFATLRHAAAYWRAESKAGRAVDARIINTSSGAGL 161 (286)
T ss_pred HHHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHHhcccCCCCCcEEEEeCchhhC
Confidence 653 4799999999321 2345677899999999888777642 1 1 2489999996554
Q ss_pred ccCCCCcCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeE
Q 047227 136 FDGVHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKF 212 (485)
Q Consensus 136 ~~~~~~~~~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~ 212 (485)
. +......|+.+|+..+.+.+.++.+ .|+++..+.|+ +..+ .............
T Consensus 162 ~---------------~~~~~~~Y~asKaal~~l~~~la~el~~~gIrVn~v~Pg-~~T~----~~~~~~~~~~~~~--- 218 (286)
T PRK07791 162 Q---------------GSVGQGNYSAAKAGIAALTLVAAAELGRYGVTVNAIAPA-ARTR----MTETVFAEMMAKP--- 218 (286)
T ss_pred c---------------CCCCchhhHHHHHHHHHHHHHHHHHHHHhCeEEEEECCC-CCCC----cchhhHHHHHhcC---
Confidence 2 1223567999999999998887654 68999999998 4222 1111111111110
Q ss_pred EecCCCceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCC
Q 047227 213 IIGDGNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNME 261 (485)
Q Consensus 213 ~~g~g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~ 261 (485)
+.....+...+|+|.+++.++... .....|+.+.+.++.
T Consensus 219 ----~~~~~~~~~pedva~~~~~L~s~~------~~~itG~~i~vdgG~ 257 (286)
T PRK07791 219 ----EEGEFDAMAPENVSPLVVWLGSAE------SRDVTGKVFEVEGGK 257 (286)
T ss_pred ----cccccCCCCHHHHHHHHHHHhCch------hcCCCCcEEEEcCCc
Confidence 011123567999999999876421 122567778776654
|
|
| >TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.4e-14 Score=135.71 Aligned_cols=164 Identities=19% Similarity=0.155 Sum_probs=121.5
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc--
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ-- 82 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 82 (485)
.++++++||||+|.||.++++.|+++| ++|.+++|...... + +... ...++..+.+|+.|.+++.++++
T Consensus 3 ~~~k~vlItGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~----~---l~~~-~~~~~~~~~~D~~~~~~~~~~~~~~ 73 (262)
T TIGR03325 3 LKGEVVLVTGGASGLGRAIVDRFVAEG-ARVAVLDKSAAGLQ----E---LEAA-HGDAVVGVEGDVRSLDDHKEAVARC 73 (262)
T ss_pred cCCcEEEEECCCChHHHHHHHHHHHCC-CEEEEEeCCHHHHH----H---HHhh-cCCceEEEEeccCCHHHHHHHHHHH
Confidence 356899999999999999999999999 68999887643110 0 1111 12457889999999887776664
Q ss_pred -----CCCEEEEcCCCCC---C----C-----CchhhhHHHHHHHHHHHHHHHHhc---CCCEEEEecCccccccCCCCc
Q 047227 83 -----GAEVVFHMAAPNS---S----I-----NNHKLHHSVNVEGTKNVIDACAEL---KVKRLIYTSSPSVVFDGVHGI 142 (485)
Q Consensus 83 -----~~d~Vih~aa~~~---~----~-----~~~~~~~~~nv~~t~~ll~a~~~~---~v~r~V~~SS~~vy~~~~~~~ 142 (485)
+.|++||+||... . . .+++..+++|+.++.++++++... .-.++|++||...+.
T Consensus 74 ~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~g~iv~~sS~~~~~------ 147 (262)
T TIGR03325 74 VAAFGKIDCLIPNAGIWDYSTALVDIPDDRIDEAFDEVFHINVKGYLLAVKAALPALVASRGSVIFTISNAGFY------ 147 (262)
T ss_pred HHHhCCCCEEEECCCCCccCCccccCCchhhhHHHHHhheeecHhHHHHHHHHHHHHhhcCCCEEEEeccceec------
Confidence 4799999998321 1 0 134578899999999999998653 124788888865442
Q ss_pred CCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhCCC--CceEEEEecCCcccC
Q 047227 143 INGNEALPYPPKHNDFYSATKAEGEALVIKANGTN--GLLTCCIRPSSIFGP 192 (485)
Q Consensus 143 ~~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~--g~~~~ilRp~~v~Gp 192 (485)
+......|+.+|...+.+.+.++.+. ++++..+.||.+..+
T Consensus 148 ---------~~~~~~~Y~~sKaa~~~l~~~la~e~~~~irvn~i~PG~i~t~ 190 (262)
T TIGR03325 148 ---------PNGGGPLYTAAKHAVVGLVKELAFELAPYVRVNGVAPGGMSSD 190 (262)
T ss_pred ---------CCCCCchhHHHHHHHHHHHHHHHHhhccCeEEEEEecCCCcCC
Confidence 12234579999999999998887653 389999999998765
|
Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase. |
| >PRK08594 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=3e-13 Score=129.50 Aligned_cols=225 Identities=14% Similarity=0.088 Sum_probs=146.6
Q ss_pred CCCCCCCCEEEEEcCC--CchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHH
Q 047227 1 MSGEENERLCVVTGGR--GFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVL 78 (485)
Q Consensus 1 M~~~~~~~~iLVtGgt--G~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~ 78 (485)
|+-+.++|+++||||+ +-||.++++.|.++| ++|.+.+|..... +..++ +.......++..+.+|+.|++++.
T Consensus 1 ~~~~~~~k~~lItGa~~s~GIG~aia~~la~~G-~~v~~~~r~~~~~-~~~~~---~~~~~~~~~~~~~~~Dv~d~~~v~ 75 (257)
T PRK08594 1 MMLSLEGKTYVVMGVANKRSIAWGIARSLHNAG-AKLVFTYAGERLE-KEVRE---LADTLEGQESLLLPCDVTSDEEIT 75 (257)
T ss_pred CccccCCCEEEEECCCCCCCHHHHHHHHHHHCC-CEEEEecCcccch-HHHHH---HHHHcCCCceEEEecCCCCHHHHH
Confidence 5556678999999997 899999999999999 6888887643210 10011 122222356888999999999887
Q ss_pred HHhc-------CCCEEEEcCCCCC-----------CCCchhhhHHHHHHHHHHHHHHHHhc--CCCEEEEecCccccccC
Q 047227 79 QALQ-------GAEVVFHMAAPNS-----------SINNHKLHHSVNVEGTKNVIDACAEL--KVKRLIYTSSPSVVFDG 138 (485)
Q Consensus 79 ~~~~-------~~d~Vih~aa~~~-----------~~~~~~~~~~~nv~~t~~ll~a~~~~--~v~r~V~~SS~~vy~~~ 138 (485)
++++ +.|++||+|+... +.+++...+++|+.++..+.+++... .-.++|++||.....
T Consensus 76 ~~~~~~~~~~g~ld~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~Iv~isS~~~~~-- 153 (257)
T PRK08594 76 ACFETIKEEVGVIHGVAHCIAFANKEDLRGEFLETSRDGFLLAQNISAYSLTAVAREAKKLMTEGGSIVTLTYLGGER-- 153 (257)
T ss_pred HHHHHHHHhCCCccEEEECcccCCCCcCCCccccCCHHHHHHHHhhhHHHHHHHHHHHHHhcccCceEEEEcccCCcc--
Confidence 7664 3899999998321 11133456788999988877776542 125899999864421
Q ss_pred CCCcCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCC--hHHHHHHHHcCCCeEE
Q 047227 139 VHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLL--VPSLVAAARAGKSKFI 213 (485)
Q Consensus 139 ~~~~~~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~--~~~~~~~~~~g~~~~~ 213 (485)
+......|+.+|+..+.+.+.++.+ .|+++.++.||.+-.+..... ...........
T Consensus 154 -------------~~~~~~~Y~asKaal~~l~~~la~el~~~gIrvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~----- 215 (257)
T PRK08594 154 -------------VVQNYNVMGVAKASLEASVKYLANDLGKDGIRVNAISAGPIRTLSAKGVGGFNSILKEIEER----- 215 (257)
T ss_pred -------------CCCCCchhHHHHHHHHHHHHHHHHHhhhcCCEEeeeecCcccCHhHhhhccccHHHHHHhhc-----
Confidence 1123457999999999999887643 579999999999865421100 01111111111
Q ss_pred ecCCCceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCC
Q 047227 214 IGDGNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNM 260 (485)
Q Consensus 214 ~g~g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~ 260 (485)
.....+...+|+|++++.++.... ....|+.+.+.++
T Consensus 216 ----~p~~r~~~p~~va~~~~~l~s~~~------~~~tG~~~~~dgg 252 (257)
T PRK08594 216 ----APLRRTTTQEEVGDTAAFLFSDLS------RGVTGENIHVDSG 252 (257)
T ss_pred ----CCccccCCHHHHHHHHHHHcCccc------ccccceEEEECCc
Confidence 112235678999999988764211 1256777776554
|
|
| >PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=3e-13 Score=140.22 Aligned_cols=216 Identities=17% Similarity=0.129 Sum_probs=144.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc---
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ--- 82 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 82 (485)
+++++|||||+|.||..+++.|.++| ++|.++++.... +. +......-+...+.+|++|.+++.++++
T Consensus 209 ~g~~vlItGasggIG~~la~~l~~~G-a~vi~~~~~~~~-----~~---l~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~ 279 (450)
T PRK08261 209 AGKVALVTGAARGIGAAIAEVLARDG-AHVVCLDVPAAG-----EA---LAAVANRVGGTALALDITAPDAPARIAEHLA 279 (450)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCC-CEEEEEeCCccH-----HH---HHHHHHHcCCeEEEEeCCCHHHHHHHHHHHH
Confidence 46899999999999999999999999 688888774221 00 1111112245678999999988877664
Q ss_pred ----CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHHHhcCC----CEEEEecCccccccCCCCcCCCCC
Q 047227 83 ----GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDACAELKV----KRLIYTSSPSVVFDGVHGIINGNE 147 (485)
Q Consensus 83 ----~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~~~~~v----~r~V~~SS~~vy~~~~~~~~~~~e 147 (485)
++|+|||+|+... ..++++..+++|+.++.++.+++..... .++|++||...+..
T Consensus 280 ~~~g~id~vi~~AG~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~g~iv~~SS~~~~~g---------- 349 (450)
T PRK08261 280 ERHGGLDIVVHNAGITRDKTLANMDEARWDSVLAVNLLAPLRITEALLAAGALGDGGRIVGVSSISGIAG---------- 349 (450)
T ss_pred HhCCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhhcCCCEEEEECChhhcCC----------
Confidence 4899999999332 2345667889999999999999987432 68999999765421
Q ss_pred CCCCCCCCCchHHHHHHHHHHHHHHHhC---CCCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCceeecc
Q 047227 148 ALPYPPKHNDFYSATKAEGEALVIKANG---TNGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFT 224 (485)
Q Consensus 148 ~~~~~~~~~~~Y~~sK~~~E~~~~~~~~---~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i 224 (485)
......|+.+|...+.+++.++. ..++++.++.|+.+-.+.... ++.....+... .. ......
T Consensus 350 -----~~~~~~Y~asKaal~~~~~~la~el~~~gi~v~~v~PG~i~t~~~~~-~~~~~~~~~~~--~~------~l~~~~ 415 (450)
T PRK08261 350 -----NRGQTNYAASKAGVIGLVQALAPLLAERGITINAVAPGFIETQMTAA-IPFATREAGRR--MN------SLQQGG 415 (450)
T ss_pred -----CCCChHHHHHHHHHHHHHHHHHHHHhhhCcEEEEEEeCcCcchhhhc-cchhHHHHHhh--cC------CcCCCC
Confidence 23456899999988888777653 368999999999875332111 11111111111 00 111223
Q ss_pred cHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCC
Q 047227 225 YVANVAHAHICAERALASEVTVAEKAAGQAYFVTNM 260 (485)
Q Consensus 225 ~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~ 260 (485)
-.+|+|+++..++.... ....|+.+.++++
T Consensus 416 ~p~dva~~~~~l~s~~~------~~itG~~i~v~g~ 445 (450)
T PRK08261 416 LPVDVAETIAWLASPAS------GGVTGNVVRVCGQ 445 (450)
T ss_pred CHHHHHHHHHHHhChhh------cCCCCCEEEECCC
Confidence 46799999998764211 1256788888664
|
|
| >COG2910 Putative NADH-flavin reductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.55 E-value=5.3e-13 Score=115.05 Aligned_cols=199 Identities=16% Similarity=0.163 Sum_probs=142.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCCCEE
Q 047227 8 RLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGAEVV 87 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~d~V 87 (485)
|||.|+|+||.+|+.+++.++++|| +|+++.|++++... .+++..++.|+-|++++.+.+.|.|+|
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGH-eVTAivRn~~K~~~-------------~~~~~i~q~Difd~~~~a~~l~g~DaV 66 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGH-EVTAIVRNASKLAA-------------RQGVTILQKDIFDLTSLASDLAGHDAV 66 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCC-eeEEEEeChHhccc-------------cccceeecccccChhhhHhhhcCCceE
Confidence 6899999999999999999999995 99999998763211 157889999999999999999999999
Q ss_pred EEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCccccccCCCCcCCCCCCCCCCCCCCchHHHHHHHHH
Q 047227 88 FHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDFYSATKAEGE 167 (485)
Q Consensus 88 ih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy~~~~~~~~~~~e~~~~~~~~~~~Y~~sK~~~E 167 (485)
|..-+......+ .........+++..+..++.|++.++.++-..-... ..-...|.-|-..|...+..+|
T Consensus 67 IsA~~~~~~~~~-----~~~~k~~~~li~~l~~agv~RllVVGGAGSL~id~g-----~rLvD~p~fP~ey~~~A~~~ae 136 (211)
T COG2910 67 ISAFGAGASDND-----ELHSKSIEALIEALKGAGVPRLLVVGGAGSLEIDEG-----TRLVDTPDFPAEYKPEALAQAE 136 (211)
T ss_pred EEeccCCCCChh-----HHHHHHHHHHHHHHhhcCCeeEEEEcCccceEEcCC-----ceeecCCCCchhHHHHHHHHHH
Confidence 987774322221 122233667899999999999998887654321111 1112225667778899999998
Q ss_pred HHHHHHhCCCCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCceeecccHHHHHHHHHHHHHH
Q 047227 168 ALVIKANGTNGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICAERA 239 (485)
Q Consensus 168 ~~~~~~~~~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~D~a~a~~~~~~~ 239 (485)
.+- .+..+..++|+.+-|+..|-|+.+.- ..+.|+-...... .--++|...|.|-+++.-++.
T Consensus 137 ~L~-~Lr~~~~l~WTfvSPaa~f~PGerTg------~yrlggD~ll~n~--~G~SrIS~aDYAiA~lDe~E~ 199 (211)
T COG2910 137 FLD-SLRAEKSLDWTFVSPAAFFEPGERTG------NYRLGGDQLLVNA--KGESRISYADYAIAVLDELEK 199 (211)
T ss_pred HHH-HHhhccCcceEEeCcHHhcCCccccC------ceEeccceEEEcC--CCceeeeHHHHHHHHHHHHhc
Confidence 542 22224569999999999999976421 1133444444332 223788899999999988773
|
|
| >PRK06505 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=8.2e-13 Score=127.48 Aligned_cols=222 Identities=12% Similarity=0.099 Sum_probs=146.4
Q ss_pred CCCCCCCCEEEEEcCCC--chHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhc-CCCeEEEEecCCCHHHH
Q 047227 1 MSGEENERLCVVTGGRG--FAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALR-SGRAHYVSFDLRHKAQV 77 (485)
Q Consensus 1 M~~~~~~~~iLVtGgtG--~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~Dl~d~~~l 77 (485)
|...++++++|||||++ -||+++++.|.++| ++|.+.+|..... +. ...... ......+.+|++|.+++
T Consensus 1 ~~~~l~~k~~lVTGas~~~GIG~aiA~~la~~G-a~V~~~~r~~~~~----~~---~~~~~~~~g~~~~~~~Dv~d~~~v 72 (271)
T PRK06505 1 MEGLMQGKRGLIMGVANDHSIAWGIAKQLAAQG-AELAFTYQGEALG----KR---VKPLAESLGSDFVLPCDVEDIASV 72 (271)
T ss_pred CccccCCCEEEEeCCCCCCcHHHHHHHHHHhCC-CEEEEecCchHHH----HH---HHHHHHhcCCceEEeCCCCCHHHH
Confidence 55556778999999996 99999999999999 6888887653210 00 111111 12235688999999988
Q ss_pred HHHhc-------CCCEEEEcCCCCC-----------CCCchhhhHHHHHHHHHHHHHHHHhc--CCCEEEEecCcccccc
Q 047227 78 LQALQ-------GAEVVFHMAAPNS-----------SINNHKLHHSVNVEGTKNVIDACAEL--KVKRLIYTSSPSVVFD 137 (485)
Q Consensus 78 ~~~~~-------~~d~Vih~aa~~~-----------~~~~~~~~~~~nv~~t~~ll~a~~~~--~v~r~V~~SS~~vy~~ 137 (485)
.++++ +.|++||+||... +.++++..+++|+.++.++.+++... .-.++|++||.+...
T Consensus 73 ~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~m~~~G~Iv~isS~~~~~- 151 (271)
T PRK06505 73 DAVFEALEKKWGKLDFVVHAIGFSDKNELKGRYADTTRENFSRTMVISCFSFTEIAKRAAKLMPDGGSMLTLTYGGSTR- 151 (271)
T ss_pred HHHHHHHHHHhCCCCEEEECCccCCCccccCChhhcCHHHHHHHHhhhhhhHHHHHHHHHHhhccCceEEEEcCCCccc-
Confidence 77764 3899999999321 12345677899999998887766532 125899999865421
Q ss_pred CCCCcCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCChH--HHHHHHHcCCCeE
Q 047227 138 GVHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLLVP--SLVAAARAGKSKF 212 (485)
Q Consensus 138 ~~~~~~~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~~~--~~~~~~~~g~~~~ 212 (485)
+......|+.+|+..+.+.+.++.+ +|+++.++.||.+-.+....... ..........+
T Consensus 152 --------------~~~~~~~Y~asKaAl~~l~r~la~el~~~gIrVn~v~PG~i~T~~~~~~~~~~~~~~~~~~~~p-- 215 (271)
T PRK06505 152 --------------VMPNYNVMGVAKAALEASVRYLAADYGPQGIRVNAISAGPVRTLAGAGIGDARAIFSYQQRNSP-- 215 (271)
T ss_pred --------------cCCccchhhhhHHHHHHHHHHHHHHHhhcCeEEEEEecCCccccccccCcchHHHHHHHhhcCC--
Confidence 1123457999999999998887654 58999999999987653211101 11111111111
Q ss_pred EecCCCceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCC
Q 047227 213 IIGDGNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNM 260 (485)
Q Consensus 213 ~~g~g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~ 260 (485)
...+...+|+|++++.++.... .-..|+...+.++
T Consensus 216 -------~~r~~~peeva~~~~fL~s~~~------~~itG~~i~vdgG 250 (271)
T PRK06505 216 -------LRRTVTIDEVGGSALYLLSDLS------SGVTGEIHFVDSG 250 (271)
T ss_pred -------ccccCCHHHHHHHHHHHhCccc------cccCceEEeecCC
Confidence 1124568999999998864211 1256777777665
|
|
| >PRK07201 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.6e-13 Score=149.18 Aligned_cols=193 Identities=19% Similarity=0.122 Sum_probs=141.5
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhh--cCCCeEEEEecCCCHHHHHHHhc
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEAL--RSGRAHYVSFDLRHKAQVLQALQ 82 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~Dl~d~~~l~~~~~ 82 (485)
.++|+++||||+|+||.++++.|.++| ++|.+++|....... ....+ ...++.++.+|+.|.+++.++++
T Consensus 369 ~~~k~vlItGas~giG~~la~~l~~~G-~~V~~~~r~~~~~~~-------~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~ 440 (657)
T PRK07201 369 LVGKVVLITGASSGIGRATAIKVAEAG-ATVFLVARNGEALDE-------LVAEIRAKGGTAHAYTCDLTDSAAVDHTVK 440 (657)
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHH-------HHHHHHhcCCcEEEEEecCCCHHHHHHHHH
Confidence 346899999999999999999999999 699999886432111 11111 13468899999999998888775
Q ss_pred -------CCCEEEEcCCCCC------C---CCchhhhHHHHHHHHHHHHHHH----HhcCCCEEEEecCccccccCCCCc
Q 047227 83 -------GAEVVFHMAAPNS------S---INNHKLHHSVNVEGTKNVIDAC----AELKVKRLIYTSSPSVVFDGVHGI 142 (485)
Q Consensus 83 -------~~d~Vih~aa~~~------~---~~~~~~~~~~nv~~t~~ll~a~----~~~~v~r~V~~SS~~vy~~~~~~~ 142 (485)
++|+|||+||... . .+++...+++|+.++.++..++ ++.+.+++|++||.+.+..
T Consensus 441 ~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~----- 515 (657)
T PRK07201 441 DILAEHGHVDYLVNNAGRSIRRSVENSTDRFHDYERTMAVNYFGAVRLILGLLPHMRERRFGHVVNVSSIGVQTN----- 515 (657)
T ss_pred HHHHhcCCCCEEEECCCCCCCCChhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCEEEEECChhhcCC-----
Confidence 4899999999321 1 1345678899999988886665 4556679999999877631
Q ss_pred CCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCc
Q 047227 143 INGNEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNN 219 (485)
Q Consensus 143 ~~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~ 219 (485)
......|+.+|...+.+.+.++.+ .|+++++++||.+..+..... . .+ .
T Consensus 516 ----------~~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~v~pg~v~T~~~~~~-----------~---~~----~ 567 (657)
T PRK07201 516 ----------APRFSAYVASKAALDAFSDVAASETLSDGITFTTIHMPLVRTPMIAPT-----------K---RY----N 567 (657)
T ss_pred ----------CCCcchHHHHHHHHHHHHHHHHHHHHhhCCcEEEEECCcCcccccCcc-----------c---cc----c
Confidence 123467999999999999877643 589999999999986632110 0 00 0
Q ss_pred eeecccHHHHHHHHHHHHH
Q 047227 220 VYDFTYVANVAHAHICAER 238 (485)
Q Consensus 220 ~~~~i~v~D~a~a~~~~~~ 238 (485)
....+..+++|+.++.++.
T Consensus 568 ~~~~~~~~~~a~~i~~~~~ 586 (657)
T PRK07201 568 NVPTISPEEAADMVVRAIV 586 (657)
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 1235679999999988765
|
|
| >COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.2e-13 Score=127.62 Aligned_cols=199 Identities=15% Similarity=0.129 Sum_probs=141.8
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhc---CCCeEEEEecCCCHHHHHHH
Q 047227 4 EENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALR---SGRAHYVSFDLRHKAQVLQA 80 (485)
Q Consensus 4 ~~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~Dl~d~~~l~~~ 80 (485)
.++++++||||||+-||..+++.|.++| ++|.++.|+..+-.. +...+. .-.++++.+|+.|++++.++
T Consensus 3 ~~~~~~~lITGASsGIG~~~A~~lA~~g-~~liLvaR~~~kL~~-------la~~l~~~~~v~v~vi~~DLs~~~~~~~l 74 (265)
T COG0300 3 PMKGKTALITGASSGIGAELAKQLARRG-YNLILVARREDKLEA-------LAKELEDKTGVEVEVIPADLSDPEALERL 74 (265)
T ss_pred CCCCcEEEEECCCchHHHHHHHHHHHCC-CEEEEEeCcHHHHHH-------HHHHHHHhhCceEEEEECcCCChhHHHHH
Confidence 3456899999999999999999999999 599999887653221 122222 24578999999999988877
Q ss_pred hc-------CCCEEEEcCCCC-------CCCCchhhhHHHHHHHHHHH----HHHHHhcCCCEEEEecCccccccCCCCc
Q 047227 81 LQ-------GAEVVFHMAAPN-------SSINNHKLHHSVNVEGTKNV----IDACAELKVKRLIYTSSPSVVFDGVHGI 142 (485)
Q Consensus 81 ~~-------~~d~Vih~aa~~-------~~~~~~~~~~~~nv~~t~~l----l~a~~~~~v~r~V~~SS~~vy~~~~~~~ 142 (485)
.+ .+|++|++||.. .+.++.+..+++|+.++..+ +.-+.+.+-.++|.++|...+-
T Consensus 75 ~~~l~~~~~~IdvLVNNAG~g~~g~f~~~~~~~~~~mi~lN~~a~~~LT~~~lp~m~~~~~G~IiNI~S~ag~~------ 148 (265)
T COG0300 75 EDELKERGGPIDVLVNNAGFGTFGPFLELSLDEEEEMIQLNILALTRLTKAVLPGMVERGAGHIINIGSAAGLI------ 148 (265)
T ss_pred HHHHHhcCCcccEEEECCCcCCccchhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEechhhcC------
Confidence 63 489999999922 23445677899998886655 4445666777999999987763
Q ss_pred CCCCCCCCCCCCCCchHHHHHHHHHHHHHHHh---CCCCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCc
Q 047227 143 INGNEALPYPPKHNDFYSATKAEGEALVIKAN---GTNGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNN 219 (485)
Q Consensus 143 ~~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~---~~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~ 219 (485)
|......|+.||+..-.+-+.+. +..|+.++.+.||.+.-+. .+ .++..... ...
T Consensus 149 ---------p~p~~avY~ATKa~v~~fSeaL~~EL~~~gV~V~~v~PG~~~T~f--------~~--~~~~~~~~---~~~ 206 (265)
T COG0300 149 ---------PTPYMAVYSATKAFVLSFSEALREELKGTGVKVTAVCPGPTRTEF--------FD--AKGSDVYL---LSP 206 (265)
T ss_pred ---------CCcchHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEEecCcccccc--------cc--cccccccc---ccc
Confidence 23345679999998765544433 4578999999999887542 11 01111110 012
Q ss_pred eeecccHHHHHHHHHHHHH
Q 047227 220 VYDFTYVANVAHAHICAER 238 (485)
Q Consensus 220 ~~~~i~v~D~a~a~~~~~~ 238 (485)
..-++..+|+|+..+.+++
T Consensus 207 ~~~~~~~~~va~~~~~~l~ 225 (265)
T COG0300 207 GELVLSPEDVAEAALKALE 225 (265)
T ss_pred hhhccCHHHHHHHHHHHHh
Confidence 3457889999999998877
|
|
| >PRK08177 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.5e-13 Score=128.77 Aligned_cols=163 Identities=15% Similarity=0.078 Sum_probs=119.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc----
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ---- 82 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~---- 82 (485)
+++++||||+|++|+++++.|.++| ++|.+++|...... . . ....++.++.+|++|++++.++++
T Consensus 1 ~k~vlItG~sg~iG~~la~~l~~~G-~~V~~~~r~~~~~~----~---~---~~~~~~~~~~~D~~d~~~~~~~~~~~~~ 69 (225)
T PRK08177 1 KRTALIIGASRGLGLGLVDRLLERG-WQVTATVRGPQQDT----A---L---QALPGVHIEKLDMNDPASLDQLLQRLQG 69 (225)
T ss_pred CCEEEEeCCCchHHHHHHHHHHhCC-CEEEEEeCCCcchH----H---H---HhccccceEEcCCCCHHHHHHHHHHhhc
Confidence 3689999999999999999999999 69999988754210 0 1 112467888999999988877765
Q ss_pred -CCCEEEEcCCCCC---------CCCchhhhHHHHHHHHHHHHHHHHhc---CCCEEEEecCccccccCCCCcCCCCCCC
Q 047227 83 -GAEVVFHMAAPNS---------SINNHKLHHSVNVEGTKNVIDACAEL---KVKRLIYTSSPSVVFDGVHGIINGNEAL 149 (485)
Q Consensus 83 -~~d~Vih~aa~~~---------~~~~~~~~~~~nv~~t~~ll~a~~~~---~v~r~V~~SS~~vy~~~~~~~~~~~e~~ 149 (485)
++|+|||+++... ...+....+++|+.++.++.+++... +..+++++||. ++... ..
T Consensus 70 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~iv~~ss~--~g~~~-----~~--- 139 (225)
T PRK08177 70 QRFDLLFVNAGISGPAHQSAADATAAEIGQLFLTNAIAPIRLARRLLGQVRPGQGVLAFMSSQ--LGSVE-----LP--- 139 (225)
T ss_pred CCCCEEEEcCcccCCCCCCcccCCHHHHhhheeeeeeHHHHHHHHHHHhhhhcCCEEEEEccC--ccccc-----cC---
Confidence 4899999998321 12345567788999999998887643 23578888874 32110 00
Q ss_pred CCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccC
Q 047227 150 PYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGP 192 (485)
Q Consensus 150 ~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp 192 (485)
+..+...|+.+|+..|.+++.++.+ .++++..++||.+-.+
T Consensus 140 --~~~~~~~Y~~sK~a~~~~~~~l~~e~~~~~i~v~~i~PG~i~t~ 183 (225)
T PRK08177 140 --DGGEMPLYKASKAALNSMTRSFVAELGEPTLTVLSMHPGWVKTD 183 (225)
T ss_pred --CCCCccchHHHHHHHHHHHHHHHHHhhcCCeEEEEEcCCceecC
Confidence 1234457999999999999887643 5799999999998655
|
|
| >smart00822 PKS_KR This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain | Back alignment and domain information |
|---|
Probab=99.53 E-value=2e-13 Score=122.24 Aligned_cols=164 Identities=20% Similarity=0.171 Sum_probs=119.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhh-hcCCCeEEEEecCCCHHHHHHHhcC---
Q 047227 8 RLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEA-LRSGRAHYVSFDLRHKAQVLQALQG--- 83 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~l~~~~~~--- 83 (485)
++++||||+|++|.++++.|.++|.+.|.++.|......... ...... ....++.++.+|+.+++++.++++.
T Consensus 1 ~~~li~Ga~~~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~---~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 77 (180)
T smart00822 1 GTYLITGGLGGLGLELARWLAERGARHLVLLSRSGPDAPGAA---ELLAELEALGAEVTVVACDVADRAALAAALAAIPA 77 (180)
T ss_pred CEEEEEcCCChHHHHHHHHHHHhhCCeEEEEeCCCCCCccHH---HHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 479999999999999999999999556777777543211100 000111 1134677899999999888777643
Q ss_pred ----CCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCccccccCCCCcCCCCCCCCCC
Q 047227 84 ----AEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVVFDGVHGIINGNEALPYP 152 (485)
Q Consensus 84 ----~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy~~~~~~~~~~~e~~~~~ 152 (485)
.|.|||+++... ..++++..+++|+.++.++++++++.+.+++|++||......
T Consensus 78 ~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~ii~~ss~~~~~~--------------- 142 (180)
T smart00822 78 RLGPLRGVIHAAGVLDDGLLANLTPERFAAVLAPKVDGAWNLHELTRDLPLDFFVLFSSVAGVLG--------------- 142 (180)
T ss_pred HcCCeeEEEEccccCCccccccCCHHHHHHhhchHhHHHHHHHHHhccCCcceEEEEccHHHhcC---------------
Confidence 699999998321 223556789999999999999998888889999998655321
Q ss_pred CCCCchHHHHHHHHHHHHHHHhCCCCceEEEEecCCcc
Q 047227 153 PKHNDFYSATKAEGEALVIKANGTNGLLTCCIRPSSIF 190 (485)
Q Consensus 153 ~~~~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~ 190 (485)
......|+.+|...+.+++... ..+++++.+.|+.+-
T Consensus 143 ~~~~~~y~~sk~~~~~~~~~~~-~~~~~~~~~~~g~~~ 179 (180)
T smart00822 143 NPGQANYAAANAFLDALAAHRR-ARGLPATSINWGAWA 179 (180)
T ss_pred CCCchhhHHHHHHHHHHHHHHH-hcCCceEEEeecccc
Confidence 1234679999999999996654 578889999888653
|
It uses NADPH to reduce the keto group to a hydroxy group. |
| >PRK09009 C factor cell-cell signaling protein; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.1e-12 Score=123.88 Aligned_cols=204 Identities=9% Similarity=0.020 Sum_probs=135.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCC-ceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHh---cC
Q 047227 8 RLCVVTGGRGFAARHLVEMLIRYDM-FSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQAL---QG 83 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~~G~-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~---~~ 83 (485)
|+++||||+|+||++++++|.++|. ..|...+|..... ...+++.++.+|++|.+++.++. .+
T Consensus 1 ~~vlItGas~gIG~~ia~~l~~~~~~~~v~~~~~~~~~~-------------~~~~~~~~~~~Dls~~~~~~~~~~~~~~ 67 (235)
T PRK09009 1 MNILIVGGSGGIGKAMVKQLLERYPDATVHATYRHHKPD-------------FQHDNVQWHALDVTDEAEIKQLSEQFTQ 67 (235)
T ss_pred CEEEEECCCChHHHHHHHHHHHhCCCCEEEEEccCCccc-------------cccCceEEEEecCCCHHHHHHHHHhcCC
Confidence 5899999999999999999999862 3555544432210 12357889999999998876654 46
Q ss_pred CCEEEEcCCCCCC-------------CCchhhhHHHHHHHHHHHHHHHHh----cCCCEEEEecCccccccCCCCcCCCC
Q 047227 84 AEVVFHMAAPNSS-------------INNHKLHHSVNVEGTKNVIDACAE----LKVKRLIYTSSPSVVFDGVHGIINGN 146 (485)
Q Consensus 84 ~d~Vih~aa~~~~-------------~~~~~~~~~~nv~~t~~ll~a~~~----~~v~r~V~~SS~~vy~~~~~~~~~~~ 146 (485)
.|+|||+||.... .+.....+++|+.++..+.+++.. .+..+++++||.. +.- . +
T Consensus 68 id~li~~aG~~~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~~~~~i~~iss~~--~~~-----~-~ 139 (235)
T PRK09009 68 LDWLINCVGMLHTQDKGPEKSLQALDADFFLQNITLNTLPSLLLAKHFTPKLKQSESAKFAVISAKV--GSI-----S-D 139 (235)
T ss_pred CCEEEECCccccccccCcccccccCCHHHHHHHHHHHhHHHHHHHHHHHhhccccCCceEEEEeecc--ccc-----c-c
Confidence 8999999994321 012345788998888877776654 3346889988732 100 0 0
Q ss_pred CCCCCCCCCCchHHHHHHHHHHHHHHHhCC-----CCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCcee
Q 047227 147 EALPYPPKHNDFYSATKAEGEALVIKANGT-----NGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVY 221 (485)
Q Consensus 147 e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~-----~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~~ 221 (485)
+ +..+...|+.+|+..+.+.+.++.+ .++++..+.||.+..+.... ..... ...
T Consensus 140 ~----~~~~~~~Y~asK~a~~~~~~~la~e~~~~~~~i~v~~v~PG~v~t~~~~~--------~~~~~---------~~~ 198 (235)
T PRK09009 140 N----RLGGWYSYRASKAALNMFLKTLSIEWQRSLKHGVVLALHPGTTDTALSKP--------FQQNV---------PKG 198 (235)
T ss_pred C----CCCCcchhhhhHHHHHHHHHHHHHHhhcccCCeEEEEEcccceecCCCcc--------hhhcc---------ccC
Confidence 1 1234568999999999999887643 47899999999987664221 01111 112
Q ss_pred ecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeC
Q 047227 222 DFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTN 259 (485)
Q Consensus 222 ~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~ 259 (485)
.++..+|+|++++.++....+ ...|..+.+.+
T Consensus 199 ~~~~~~~~a~~~~~l~~~~~~------~~~g~~~~~~g 230 (235)
T PRK09009 199 KLFTPEYVAQCLLGIIANATP------AQSGSFLAYDG 230 (235)
T ss_pred CCCCHHHHHHHHHHHHHcCCh------hhCCcEEeeCC
Confidence 357899999999988763222 24566554443
|
|
| >PRK12367 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.8e-12 Score=123.08 Aligned_cols=182 Identities=12% Similarity=0.059 Sum_probs=123.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCCC
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGAE 85 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~d 85 (485)
++++++||||+|.||+++++.|+++| ++|.+++|...... .... ......+.+|++|.+++.+.+.+.|
T Consensus 13 ~~k~~lITGas~gIG~ala~~l~~~G-~~Vi~~~r~~~~~~---------~~~~-~~~~~~~~~D~~~~~~~~~~~~~iD 81 (245)
T PRK12367 13 QGKRIGITGASGALGKALTKAFRAKG-AKVIGLTHSKINNS---------ESND-ESPNEWIKWECGKEESLDKQLASLD 81 (245)
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHHCC-CEEEEEECCchhhh---------hhhc-cCCCeEEEeeCCCHHHHHHhcCCCC
Confidence 46899999999999999999999999 68988887642110 0001 1123578899999999999888899
Q ss_pred EEEEcCCCC----CCCCchhhhHHHHHHHHHHHHHHHHhc-------CCCEEEEecCccccccCCCCcCCCCCCCCCCCC
Q 047227 86 VVFHMAAPN----SSINNHKLHHSVNVEGTKNVIDACAEL-------KVKRLIYTSSPSVVFDGVHGIINGNEALPYPPK 154 (485)
Q Consensus 86 ~Vih~aa~~----~~~~~~~~~~~~nv~~t~~ll~a~~~~-------~v~r~V~~SS~~vy~~~~~~~~~~~e~~~~~~~ 154 (485)
++||+||.. .+.+++...+++|+.++.++++++... +-..++..||..... + .
T Consensus 82 ilVnnAG~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~g~~iiv~ss~a~~~---------------~-~ 145 (245)
T PRK12367 82 VLILNHGINPGGRQDPENINKALEINALSSWRLLELFEDIALNNNSQIPKEIWVNTSEAEIQ---------------P-A 145 (245)
T ss_pred EEEECCccCCcCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccCCCeEEEEEecccccC---------------C-C
Confidence 999999932 223467788999999999999887542 112343444432210 1 1
Q ss_pred CCchHHHHHHHHHHHH---HHHh---CCCCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCceeecccHHH
Q 047227 155 HNDFYSATKAEGEALV---IKAN---GTNGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVAN 228 (485)
Q Consensus 155 ~~~~Y~~sK~~~E~~~---~~~~---~~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~D 228 (485)
....|+.||+..+.+. +++. ...++.+..+.|+.+..+-. + ...+..+|
T Consensus 146 ~~~~Y~aSKaal~~~~~l~~~l~~e~~~~~i~v~~~~pg~~~t~~~---------------~----------~~~~~~~~ 200 (245)
T PRK12367 146 LSPSYEISKRLIGQLVSLKKNLLDKNERKKLIIRKLILGPFRSELN---------------P----------IGIMSADF 200 (245)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHhhcccccEEEEecCCCcccccC---------------c----------cCCCCHHH
Confidence 2356999999875433 2221 24678888888876532210 0 11466899
Q ss_pred HHHHHHHHHHH
Q 047227 229 VAHAHICAERA 239 (485)
Q Consensus 229 ~a~a~~~~~~~ 239 (485)
+|+.++.+++.
T Consensus 201 vA~~i~~~~~~ 211 (245)
T PRK12367 201 VAKQILDQANL 211 (245)
T ss_pred HHHHHHHHHhc
Confidence 99998888763
|
|
| >PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.52 E-value=7.5e-13 Score=133.27 Aligned_cols=183 Identities=13% Similarity=0.079 Sum_probs=122.3
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCC
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGA 84 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 84 (485)
.++|+++||||+|+||+++++.|.++| ++|.+++|...... .. .. ....++..+.+|++|++++.+.+.++
T Consensus 176 l~gK~VLITGASgGIG~aLA~~La~~G-~~Vi~l~r~~~~l~---~~---~~--~~~~~v~~v~~Dvsd~~~v~~~l~~I 246 (406)
T PRK07424 176 LKGKTVAVTGASGTLGQALLKELHQQG-AKVVALTSNSDKIT---LE---IN--GEDLPVKTLHWQVGQEAALAELLEKV 246 (406)
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHH---HH---Hh--hcCCCeEEEEeeCCCHHHHHHHhCCC
Confidence 357899999999999999999999999 58888887643110 00 00 01234678899999999999999999
Q ss_pred CEEEEcCCCCC----CCCchhhhHHHHHHHHHHHHHHHHhc----C---C-CEEEEecCccccccCCCCcCCCCCCCCCC
Q 047227 85 EVVFHMAAPNS----SINNHKLHHSVNVEGTKNVIDACAEL----K---V-KRLIYTSSPSVVFDGVHGIINGNEALPYP 152 (485)
Q Consensus 85 d~Vih~aa~~~----~~~~~~~~~~~nv~~t~~ll~a~~~~----~---v-~r~V~~SS~~vy~~~~~~~~~~~e~~~~~ 152 (485)
|++||+||... +.++++..+++|+.++.++++++... + . ..+|.+|++.. .
T Consensus 247 DiLInnAGi~~~~~~s~e~~~~~~~vNv~g~i~Li~a~lp~m~~~~~~~~~~iiVn~Ssa~~-~---------------- 309 (406)
T PRK07424 247 DILIINHGINVHGERTPEAINKSYEVNTFSAWRLMELFFTTVKTNRDKATKEVWVNTSEAEV-N---------------- 309 (406)
T ss_pred CEEEECCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEEccccc-c----------------
Confidence 99999998321 22355778999999999999987542 2 1 23455554211 0
Q ss_pred CCCCchHHHHHHHHHHHHHHHhCCCCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCceeecccHHHHHHH
Q 047227 153 PKHNDFYSATKAEGEALVIKANGTNGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHA 232 (485)
Q Consensus 153 ~~~~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~D~a~a 232 (485)
......|+.||...+.+........++.+..+.|+.+ .... + ....+..+|+|+.
T Consensus 310 ~~~~~~Y~ASKaAl~~l~~l~~~~~~~~I~~i~~gp~----~t~~----------~-----------~~~~~spe~vA~~ 364 (406)
T PRK07424 310 PAFSPLYELSKRALGDLVTLRRLDAPCVVRKLILGPF----KSNL----------N-----------PIGVMSADWVAKQ 364 (406)
T ss_pred CCCchHHHHHHHHHHHHHHHHHhCCCCceEEEEeCCC----cCCC----------C-----------cCCCCCHHHHHHH
Confidence 1123469999999988754322233444444444332 1111 0 0124678999999
Q ss_pred HHHHHH
Q 047227 233 HICAER 238 (485)
Q Consensus 233 ~~~~~~ 238 (485)
++.+++
T Consensus 365 il~~i~ 370 (406)
T PRK07424 365 ILKLAK 370 (406)
T ss_pred HHHHHH
Confidence 998876
|
|
| >PRK07889 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.5e-12 Score=124.62 Aligned_cols=223 Identities=15% Similarity=0.103 Sum_probs=144.8
Q ss_pred CCCCCCCCEEEEEcC--CCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHH
Q 047227 1 MSGEENERLCVVTGG--RGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVL 78 (485)
Q Consensus 1 M~~~~~~~~iLVtGg--tG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~ 78 (485)
|+....+++++|||| ++-||.++++.|.++| ++|.+.+|.+... ..++ ....+ ..++.++.+|++|++++.
T Consensus 1 ~~~~~~~k~~lItGa~~s~GIG~a~a~~la~~G-~~v~l~~r~~~~~--~~~~---~~~~~-~~~~~~~~~Dv~~~~~i~ 73 (256)
T PRK07889 1 MMGLLEGKRILVTGVITDSSIAFHVARVAQEQG-AEVVLTGFGRALR--LTER---IAKRL-PEPAPVLELDVTNEEHLA 73 (256)
T ss_pred CcccccCCEEEEeCCCCcchHHHHHHHHHHHCC-CEEEEecCccchh--HHHH---HHHhc-CCCCcEEeCCCCCHHHHH
Confidence 666677899999999 8999999999999999 6898887753210 0000 11111 235778999999999887
Q ss_pred HHhc-------CCCEEEEcCCCCC-----------CCCchhhhHHHHHHHHHHHHHHHHhc--CCCEEEEecCccccccC
Q 047227 79 QALQ-------GAEVVFHMAAPNS-----------SINNHKLHHSVNVEGTKNVIDACAEL--KVKRLIYTSSPSVVFDG 138 (485)
Q Consensus 79 ~~~~-------~~d~Vih~aa~~~-----------~~~~~~~~~~~nv~~t~~ll~a~~~~--~v~r~V~~SS~~vy~~~ 138 (485)
++++ +.|++||+||... +.++....+++|+.++..+.+++... .-.++|++|+....
T Consensus 74 ~~~~~~~~~~g~iD~li~nAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~m~~~g~Iv~is~~~~~--- 150 (256)
T PRK07889 74 SLADRVREHVDGLDGVVHSIGFAPQSALGGNFLDAPWEDVATALHVSAYSLKSLAKALLPLMNEGGSIVGLDFDATV--- 150 (256)
T ss_pred HHHHHHHHHcCCCcEEEEccccccccccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhcccCceEEEEeecccc---
Confidence 7653 4899999999321 11234456899999988887776532 12478888753211
Q ss_pred CCCcCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCC--hHHHHHHHHcCCCeEE
Q 047227 139 VHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLL--VPSLVAAARAGKSKFI 213 (485)
Q Consensus 139 ~~~~~~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~--~~~~~~~~~~g~~~~~ 213 (485)
+......|+.||+..+.+.+.++.+ .|+++.++.||.+-.+..... .........+..+
T Consensus 151 -------------~~~~~~~Y~asKaal~~l~~~la~el~~~gIrvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p--- 214 (256)
T PRK07889 151 -------------AWPAYDWMGVAKAALESTNRYLARDLGPRGIRVNLVAAGPIRTLAAKAIPGFELLEEGWDERAP--- 214 (256)
T ss_pred -------------cCCccchhHHHHHHHHHHHHHHHHHhhhcCeEEEeeccCcccChhhhcccCcHHHHHHHHhcCc---
Confidence 1123456999999999998877653 589999999999876532111 0111111111111
Q ss_pred ecCCCceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCC
Q 047227 214 IGDGNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNM 260 (485)
Q Consensus 214 ~g~g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~ 260 (485)
..+.+..++|+|++++.++.... ....|+.+.+.++
T Consensus 215 -----~~~~~~~p~evA~~v~~l~s~~~------~~~tG~~i~vdgg 250 (256)
T PRK07889 215 -----LGWDVKDPTPVARAVVALLSDWF------PATTGEIVHVDGG 250 (256)
T ss_pred -----cccccCCHHHHHHHHHHHhCccc------ccccceEEEEcCc
Confidence 01135678999999998765211 2256777776554
|
|
| >PRK05855 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.2e-13 Score=145.93 Aligned_cols=165 Identities=18% Similarity=0.133 Sum_probs=124.0
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhc--CCCeEEEEecCCCHHHHHHHhc
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALR--SGRAHYVSFDLRHKAQVLQALQ 82 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~Dl~d~~~l~~~~~ 82 (485)
..++++|||||+|+||+++++.|.++| ++|.+++|+...... ....+. ..++.++.+|++|++++.++++
T Consensus 313 ~~~~~~lv~G~s~giG~~~a~~l~~~G-~~v~~~~r~~~~~~~-------~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~ 384 (582)
T PRK05855 313 FSGKLVVVTGAGSGIGRETALAFAREG-AEVVASDIDEAAAER-------TAELIRAAGAVAHAYRVDVSDADAMEAFAE 384 (582)
T ss_pred CCCCEEEEECCcCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHH-------HHHHHHhcCCeEEEEEcCCCCHHHHHHHHH
Confidence 346799999999999999999999999 589998886431110 111111 2468899999999998877764
Q ss_pred -------CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHHH----hcC-CCEEEEecCccccccCCCCcC
Q 047227 83 -------GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDACA----ELK-VKRLIYTSSPSVVFDGVHGII 143 (485)
Q Consensus 83 -------~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~~----~~~-v~r~V~~SS~~vy~~~~~~~~ 143 (485)
++|+|||+||... ..++....+++|+.|+.++.+++. +.+ -.++|++||.+.|..
T Consensus 385 ~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~------ 458 (582)
T PRK05855 385 WVRAEHGVPDIVVNNAGIGMAGGFLDTSAEDWDRVLDVNLWGVIHGCRLFGRQMVERGTGGHIVNVASAAAYAP------ 458 (582)
T ss_pred HHHHhcCCCcEEEECCccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEECChhhccC------
Confidence 3899999999422 223556778899999999888754 333 358999999887741
Q ss_pred CCCCCCCCCCCCCchHHHHHHHHHHHHHHHhC---CCCceEEEEecCCcccC
Q 047227 144 NGNEALPYPPKHNDFYSATKAEGEALVIKANG---TNGLLTCCIRPSSIFGP 192 (485)
Q Consensus 144 ~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~---~~g~~~~ilRp~~v~Gp 192 (485)
..+...|+.+|+..+.+.+.++. ..|+++++++||.+-.+
T Consensus 459 ---------~~~~~~Y~~sKaa~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~ 501 (582)
T PRK05855 459 ---------SRSLPAYATSKAAVLMLSECLRAELAAAGIGVTAICPGFVDTN 501 (582)
T ss_pred ---------CCCCcHHHHHHHHHHHHHHHHHHHhcccCcEEEEEEeCCCccc
Confidence 23457899999999888776653 35899999999998554
|
|
| >PRK06603 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.5e-12 Score=123.34 Aligned_cols=222 Identities=12% Similarity=0.072 Sum_probs=144.6
Q ss_pred CCC-CCCCCEEEEEcCCC--chHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcC-CCeEEEEecCCCHHH
Q 047227 1 MSG-EENERLCVVTGGRG--FAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRS-GRAHYVSFDLRHKAQ 76 (485)
Q Consensus 1 M~~-~~~~~~iLVtGgtG--~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~Dl~d~~~ 76 (485)
|+. .+++|.++||||++ -||.++++.|.++| ++|.+.+|... . .+. ....... .....+.+|++|+++
T Consensus 1 ~~~~~~~~k~~lITGas~~~GIG~a~a~~la~~G-~~v~~~~r~~~-~---~~~---~~~l~~~~g~~~~~~~Dv~~~~~ 72 (260)
T PRK06603 1 MTTGLLQGKKGLITGIANNMSISWAIAQLAKKHG-AELWFTYQSEV-L---EKR---VKPLAEEIGCNFVSELDVTNPKS 72 (260)
T ss_pred CCCcccCCcEEEEECCCCCcchHHHHHHHHHHcC-CEEEEEeCchH-H---HHH---HHHHHHhcCCceEEEccCCCHHH
Confidence 444 35678999999997 79999999999999 68888776521 0 000 1111111 223457899999998
Q ss_pred HHHHhc-------CCCEEEEcCCCCC-----------CCCchhhhHHHHHHHHHHHHHHHHhc--CCCEEEEecCccccc
Q 047227 77 VLQALQ-------GAEVVFHMAAPNS-----------SINNHKLHHSVNVEGTKNVIDACAEL--KVKRLIYTSSPSVVF 136 (485)
Q Consensus 77 l~~~~~-------~~d~Vih~aa~~~-----------~~~~~~~~~~~nv~~t~~ll~a~~~~--~v~r~V~~SS~~vy~ 136 (485)
+.++++ +.|++||+|+... +.+++...+++|+.++..+.+++... .-.++|++||.....
T Consensus 73 v~~~~~~~~~~~g~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~m~~~G~Iv~isS~~~~~ 152 (260)
T PRK06603 73 ISNLFDDIKEKWGSFDFLLHGMAFADKNELKGRYVDTSLENFHNSLHISCYSLLELSRSAEALMHDGGSIVTLTYYGAEK 152 (260)
T ss_pred HHHHHHHHHHHcCCccEEEEccccCCcccccCccccCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCceEEEEecCcccc
Confidence 887764 3899999998321 22345678899999998888775432 125899999865421
Q ss_pred cCCCCcCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhC---CCCceEEEEecCCcccCCCCC--ChHHHHHHHHcCCCe
Q 047227 137 DGVHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANG---TNGLLTCCIRPSSIFGPGDRL--LVPSLVAAARAGKSK 211 (485)
Q Consensus 137 ~~~~~~~~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~---~~g~~~~ilRp~~v~Gp~~~~--~~~~~~~~~~~g~~~ 211 (485)
+......|+.+|+..+.+.+.++. ..|+++.++.||.+-.+.... ..+..........
T Consensus 153 ---------------~~~~~~~Y~asKaal~~l~~~la~el~~~gIrVn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~-- 215 (260)
T PRK06603 153 ---------------VIPNYNVMGVAKAALEASVKYLANDMGENNIRVNAISAGPIKTLASSAIGDFSTMLKSHAATA-- 215 (260)
T ss_pred ---------------CCCcccchhhHHHHHHHHHHHHHHHhhhcCeEEEEEecCcCcchhhhcCCCcHHHHHHHHhcC--
Confidence 112346799999999999887765 357999999999986542110 0111111122111
Q ss_pred EEecCCCceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCC
Q 047227 212 FIIGDGNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNM 260 (485)
Q Consensus 212 ~~~g~g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~ 260 (485)
....+...+|+|++++.++.... ....|+.+.+.++
T Consensus 216 -------p~~r~~~pedva~~~~~L~s~~~------~~itG~~i~vdgG 251 (260)
T PRK06603 216 -------PLKRNTTQEDVGGAAVYLFSELS------KGVTGEIHYVDCG 251 (260)
T ss_pred -------CcCCCCCHHHHHHHHHHHhCccc------ccCcceEEEeCCc
Confidence 11235678999999998865211 1256777777654
|
|
| >PRK07370 enoyl-(acyl carrier protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.9e-12 Score=124.07 Aligned_cols=221 Identities=14% Similarity=0.104 Sum_probs=143.9
Q ss_pred CCCCEEEEEcCC--CchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhh-cCCCeEEEEecCCCHHHHHHHh
Q 047227 5 ENERLCVVTGGR--GFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEAL-RSGRAHYVSFDLRHKAQVLQAL 81 (485)
Q Consensus 5 ~~~~~iLVtGgt--G~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~ 81 (485)
.++++++||||+ +-||.++++.|.++| ++|.+..+..... ...+ ...... ...++.++.+|++|++++.+++
T Consensus 4 l~~k~~lItGas~~~GIG~aia~~la~~G-~~v~~~~~~~~~~--~~~~--~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~ 78 (258)
T PRK07370 4 LTGKKALVTGIANNRSIAWGIAQQLHAAG-AELGITYLPDEKG--RFEK--KVRELTEPLNPSLFLPCDVQDDAQIEETF 78 (258)
T ss_pred cCCcEEEEeCCCCCCchHHHHHHHHHHCC-CEEEEEecCcccc--hHHH--HHHHHHhccCcceEeecCcCCHHHHHHHH
Confidence 356899999986 799999999999999 6887776543211 0000 011111 1134678899999999888776
Q ss_pred c-------CCCEEEEcCCCCC-----------CCCchhhhHHHHHHHHHHHHHHHHhc--CCCEEEEecCccccccCCCC
Q 047227 82 Q-------GAEVVFHMAAPNS-----------SINNHKLHHSVNVEGTKNVIDACAEL--KVKRLIYTSSPSVVFDGVHG 141 (485)
Q Consensus 82 ~-------~~d~Vih~aa~~~-----------~~~~~~~~~~~nv~~t~~ll~a~~~~--~v~r~V~~SS~~vy~~~~~~ 141 (485)
+ +.|++||+||... +.++++..+++|+.++..+.+++... .-.++|++||.....
T Consensus 79 ~~~~~~~g~iD~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~l~~~~~~~m~~~g~Iv~isS~~~~~----- 153 (258)
T PRK07370 79 ETIKQKWGKLDILVHCLAFAGKEELIGDFSATSREGFARALEISAYSLAPLCKAAKPLMSEGGSIVTLTYLGGVR----- 153 (258)
T ss_pred HHHHHHcCCCCEEEEcccccCcccccCcchhhCHHHHHHHheeeeHHHHHHHHHHHHHHhhCCeEEEEecccccc-----
Confidence 4 4899999999321 12245678899999988887775532 125899999854321
Q ss_pred cCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCC--hHHHHHHHHcCCCeEEecC
Q 047227 142 IINGNEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLL--VPSLVAAARAGKSKFIIGD 216 (485)
Q Consensus 142 ~~~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~--~~~~~~~~~~g~~~~~~g~ 216 (485)
+......|+.+|+..+.+.+.++.+ .|+++.++.||.+-.+-.... .+.........
T Consensus 154 ----------~~~~~~~Y~asKaal~~l~~~la~el~~~gI~Vn~i~PG~v~T~~~~~~~~~~~~~~~~~~~-------- 215 (258)
T PRK07370 154 ----------AIPNYNVMGVAKAALEASVRYLAAELGPKNIRVNAISAGPIRTLASSAVGGILDMIHHVEEK-------- 215 (258)
T ss_pred ----------CCcccchhhHHHHHHHHHHHHHHHHhCcCCeEEEEEecCcccCchhhccccchhhhhhhhhc--------
Confidence 1233467999999999998887643 579999999999865521110 11111111111
Q ss_pred CCceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCC
Q 047227 217 GNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNM 260 (485)
Q Consensus 217 g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~ 260 (485)
.....+...+|++.++..++.... ....|+.+.+.++
T Consensus 216 -~p~~r~~~~~dva~~~~fl~s~~~------~~~tG~~i~vdgg 252 (258)
T PRK07370 216 -APLRRTVTQTEVGNTAAFLLSDLA------SGITGQTIYVDAG 252 (258)
T ss_pred -CCcCcCCCHHHHHHHHHHHhChhh------ccccCcEEEECCc
Confidence 112246678999999998764211 1256777777554
|
|
| >PRK08690 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.5e-12 Score=123.47 Aligned_cols=219 Identities=12% Similarity=0.079 Sum_probs=141.8
Q ss_pred CCCCEEEEEcC--CCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhc-CCCeEEEEecCCCHHHHHHHh
Q 047227 5 ENERLCVVTGG--RGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALR-SGRAHYVSFDLRHKAQVLQAL 81 (485)
Q Consensus 5 ~~~~~iLVtGg--tG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~Dl~d~~~l~~~~ 81 (485)
.+++++||||| ++-||.++++.|.++| ++|.+..|.... . +. ...... ......+.+|+.|++++.+++
T Consensus 4 ~~~k~~lITGa~~~~GIG~a~a~~l~~~G-~~v~~~~~~~~~-~---~~---~~~~~~~~~~~~~~~~Dv~~~~~v~~~~ 75 (261)
T PRK08690 4 LQGKKILITGMISERSIAYGIAKACREQG-AELAFTYVVDKL-E---ER---VRKMAAELDSELVFRCDVASDDEINQVF 75 (261)
T ss_pred cCCcEEEEECCCCCCcHHHHHHHHHHHCC-CEEEEEcCcHHH-H---HH---HHHHHhccCCceEEECCCCCHHHHHHHH
Confidence 45789999997 6799999999999999 688877654210 0 00 111111 123457899999999888776
Q ss_pred c-------CCCEEEEcCCCCCC------------CCchhhhHHHHHHHHHHHHHHHHhc---CCCEEEEecCccccccCC
Q 047227 82 Q-------GAEVVFHMAAPNSS------------INNHKLHHSVNVEGTKNVIDACAEL---KVKRLIYTSSPSVVFDGV 139 (485)
Q Consensus 82 ~-------~~d~Vih~aa~~~~------------~~~~~~~~~~nv~~t~~ll~a~~~~---~v~r~V~~SS~~vy~~~~ 139 (485)
+ +.|++||+||.... .+++...+++|+.++..+.+++... +-.++|++||...+.
T Consensus 76 ~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~p~m~~~~g~Iv~iss~~~~~--- 152 (261)
T PRK08690 76 ADLGKHWDGLDGLVHSIGFAPKEALSGDFLDSISREAFNTAHEISAYSLPALAKAARPMMRGRNSAIVALSYLGAVR--- 152 (261)
T ss_pred HHHHHHhCCCcEEEECCccCCccccccchhhhcCHHHHHHHHHhchHHHHHHHHHHHHHhhhcCcEEEEEccccccc---
Confidence 3 48999999993211 1123455788988887777664431 125799999865431
Q ss_pred CCcCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhC---CCCceEEEEecCCcccCCCCCC--hHHHHHHHHcCCCeEEe
Q 047227 140 HGIINGNEALPYPPKHNDFYSATKAEGEALVIKANG---TNGLLTCCIRPSSIFGPGDRLL--VPSLVAAARAGKSKFII 214 (485)
Q Consensus 140 ~~~~~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~---~~g~~~~ilRp~~v~Gp~~~~~--~~~~~~~~~~g~~~~~~ 214 (485)
+......|+.+|...+.+.+.++. .+|+++.++.||.+-.+..... .......+.+..
T Consensus 153 ------------~~~~~~~Y~asKaal~~l~~~la~e~~~~gIrVn~i~PG~v~T~~~~~~~~~~~~~~~~~~~~----- 215 (261)
T PRK08690 153 ------------AIPNYNVMGMAKASLEAGIRFTAACLGKEGIRCNGISAGPIKTLAASGIADFGKLLGHVAAHN----- 215 (261)
T ss_pred ------------CCCCcccchhHHHHHHHHHHHHHHHhhhcCeEEEEEecCcccchhhhcCCchHHHHHHHhhcC-----
Confidence 122346799999999998887653 4689999999999865421111 011111111111
Q ss_pred cCCCceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCC
Q 047227 215 GDGNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNME 261 (485)
Q Consensus 215 g~g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~ 261 (485)
....+..++|+|+++..++.... .-..|+.+.+.++.
T Consensus 216 ----p~~r~~~peevA~~v~~l~s~~~------~~~tG~~i~vdgG~ 252 (261)
T PRK08690 216 ----PLRRNVTIEEVGNTAAFLLSDLS------SGITGEITYVDGGY 252 (261)
T ss_pred ----CCCCCCCHHHHHHHHHHHhCccc------CCcceeEEEEcCCc
Confidence 12236679999999998865221 12567777776553
|
|
| >KOG3019 consensus Predicted nucleoside-diphosphate sugar epimerase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.49 E-value=9e-13 Score=116.95 Aligned_cols=245 Identities=16% Similarity=0.145 Sum_probs=159.7
Q ss_pred CCCCCEEEEEcCCCchHHHHHH-----HHHhcC---CceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHH
Q 047227 4 EENERLCVVTGGRGFAARHLVE-----MLIRYD---MFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKA 75 (485)
Q Consensus 4 ~~~~~~iLVtGgtG~iG~~l~~-----~Ll~~G---~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~ 75 (485)
+.+.++.++-+++|+|+..+.. ++-+.+ .+.|++++|.+... ++++...|..-..
T Consensus 9 ~~~sr~a~~~~~~g~i~~nl~~~~~~~H~t~~~~a~~h~vtv~sR~pg~~-----------------ritw~el~~~Gip 71 (315)
T KOG3019|consen 9 SGKSRDAVSNWSNGIIRENLGSETSCCHDTNVHSADNHAVTVLSRSPGKA-----------------RITWPELDFPGIP 71 (315)
T ss_pred CCccccCCCCccccchhccccCcccccccCCCCcccccceEEEecCCCCc-----------------ccccchhcCCCCc
Confidence 3445678888999999987765 333222 14899999887522 2333222221100
Q ss_pred HHHHHhcCCCEEEEcCC--CCCCCCchh-----hhHHHHHHHHHHHHHHHHhcC--CCEEEEecCccccccCCCCcCCCC
Q 047227 76 QVLQALQGAEVVFHMAA--PNSSINNHK-----LHHSVNVEGTKNVIDACAELK--VKRLIYTSSPSVVFDGVHGIINGN 146 (485)
Q Consensus 76 ~l~~~~~~~d~Vih~aa--~~~~~~~~~-----~~~~~nv~~t~~ll~a~~~~~--v~r~V~~SS~~vy~~~~~~~~~~~ 146 (485)
-.++++++.++ .......+. +.....+..|..+.++...+. .+.+|.+|..++|-......+.++
T Consensus 72 ------~sc~a~vna~g~n~l~P~rRWsp~fqkev~gSRi~~t~~la~aI~~aPq~~~~~Vlv~gva~y~pS~s~eY~e~ 145 (315)
T KOG3019|consen 72 ------ISCVAGVNAVGNNALLPIRRWSPEFQKEVKGSRIRVTSKLADAINNAPQEARPTVLVSGVAVYVPSESQEYSEK 145 (315)
T ss_pred ------eehHHHHhhhhhhccCchhhcCHHHHHHhhcceeeHHHHHHHHHhcCCCCCCCeEEEEeeEEeccccccccccc
Confidence 02444455444 111111222 233344555788899988876 467999999988854444444333
Q ss_pred CCCCCCCCCCchHHHHHHHHHHHHHHHhCCCCceEEEEecCCcccCCCCCChHHHH--HHHHcCCCeEEecCCCceeecc
Q 047227 147 EALPYPPKHNDFYSATKAEGEALVIKANGTNGLLTCCIRPSSIFGPGDRLLVPSLV--AAARAGKSKFIIGDGNNVYDFT 224 (485)
Q Consensus 147 e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~~~~~~~~--~~~~~g~~~~~~g~g~~~~~~i 224 (485)
. +...++..+..-..-|......+ ...+++++|.|.|.|.+.... ..|+ -++-.|++ .|+|+++++||
T Consensus 146 ~----~~qgfd~~srL~l~WE~aA~~~~--~~~r~~~iR~GvVlG~gGGa~-~~M~lpF~~g~GGP---lGsG~Q~fpWI 215 (315)
T KOG3019|consen 146 I----VHQGFDILSRLCLEWEGAALKAN--KDVRVALIRIGVVLGKGGGAL-AMMILPFQMGAGGP---LGSGQQWFPWI 215 (315)
T ss_pred c----ccCChHHHHHHHHHHHHHhhccC--cceeEEEEEEeEEEecCCcch-hhhhhhhhhccCCc---CCCCCeeeeee
Confidence 2 34566777776666777666644 349999999999999876532 2222 23334543 58999999999
Q ss_pred cHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCCCccHHHHHHHHHHHcCCCCCCccCCHHHHH
Q 047227 225 YVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMM 291 (485)
Q Consensus 225 ~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~~t~~el~~~i~~~~g~~~~~~~~p~~~~~ 291 (485)
|++|++..+..++++ +... ++.|-..+++.+..||.+.+.++++.+ -++.+|.+++.
T Consensus 216 Hv~DL~~li~~ale~--------~~v~-GViNgvAP~~~~n~Ef~q~lg~aL~Rp-~~~pvP~fvvq 272 (315)
T KOG3019|consen 216 HVDDLVNLIYEALEN--------PSVK-GVINGVAPNPVRNGEFCQQLGSALSRP-SWLPVPDFVVQ 272 (315)
T ss_pred ehHHHHHHHHHHHhc--------CCCC-ceecccCCCccchHHHHHHHHHHhCCC-cccCCcHHHHH
Confidence 999999999999883 3333 478888899999999999999999875 45677776543
|
|
| >PRK07533 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.1e-12 Score=121.76 Aligned_cols=219 Identities=15% Similarity=0.131 Sum_probs=144.3
Q ss_pred CCCCEEEEEcCC--CchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc
Q 047227 5 ENERLCVVTGGR--GFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ 82 (485)
Q Consensus 5 ~~~~~iLVtGgt--G~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~ 82 (485)
.++|++|||||+ +-||.++++.|.++| ++|.+.+|..... ...++ +...+ ..+.++.+|++|.+++.++++
T Consensus 8 ~~~k~~lItGas~g~GIG~a~a~~la~~G-~~v~l~~r~~~~~-~~~~~---~~~~~--~~~~~~~~D~~~~~~v~~~~~ 80 (258)
T PRK07533 8 LAGKRGLVVGIANEQSIAWGCARAFRALG-AELAVTYLNDKAR-PYVEP---LAEEL--DAPIFLPLDVREPGQLEAVFA 80 (258)
T ss_pred cCCCEEEEECCCCCCcHHHHHHHHHHHcC-CEEEEEeCChhhH-HHHHH---HHHhh--ccceEEecCcCCHHHHHHHHH
Confidence 356899999998 599999999999999 6888888763210 00000 11111 235678999999988877653
Q ss_pred -------CCCEEEEcCCCCC-----------CCCchhhhHHHHHHHHHHHHHHHHhc--CCCEEEEecCccccccCCCCc
Q 047227 83 -------GAEVVFHMAAPNS-----------SINNHKLHHSVNVEGTKNVIDACAEL--KVKRLIYTSSPSVVFDGVHGI 142 (485)
Q Consensus 83 -------~~d~Vih~aa~~~-----------~~~~~~~~~~~nv~~t~~ll~a~~~~--~v~r~V~~SS~~vy~~~~~~~ 142 (485)
+.|++||+|+... +.++++..+++|+.++.++.+++... .-.++|++||.....
T Consensus 81 ~~~~~~g~ld~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~g~Ii~iss~~~~~------ 154 (258)
T PRK07533 81 RIAEEWGRLDFLLHSIAFAPKEDLHGRVVDCSREGFALAMDVSCHSFIRMARLAEPLMTNGGSLLTMSYYGAEK------ 154 (258)
T ss_pred HHHHHcCCCCEEEEcCccCCcccccCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhccCCEEEEEecccccc------
Confidence 3799999999321 22346778999999999998876542 124799999854321
Q ss_pred CCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCC--hHHHHHHHHcCCCeEEecCC
Q 047227 143 INGNEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLL--VPSLVAAARAGKSKFIIGDG 217 (485)
Q Consensus 143 ~~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~--~~~~~~~~~~g~~~~~~g~g 217 (485)
+......|+.+|+..+.+.+.++.+ .|+++.++.||.+-.+-.... .........+..
T Consensus 155 ---------~~~~~~~Y~asKaal~~l~~~la~el~~~gI~Vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~-------- 217 (258)
T PRK07533 155 ---------VVENYNLMGPVKAALESSVRYLAAELGPKGIRVHAISPGPLKTRAASGIDDFDALLEDAAERA-------- 217 (258)
T ss_pred ---------CCccchhhHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcCChhhhccCCcHHHHHHHHhcC--------
Confidence 1123457999999999988877643 579999999999865421111 122222222111
Q ss_pred CceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCC
Q 047227 218 NNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNM 260 (485)
Q Consensus 218 ~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~ 260 (485)
....+...+|+|++++.++... .....|+.+.+.++
T Consensus 218 -p~~r~~~p~dva~~~~~L~s~~------~~~itG~~i~vdgg 253 (258)
T PRK07533 218 -PLRRLVDIDDVGAVAAFLASDA------ARRLTGNTLYIDGG 253 (258)
T ss_pred -CcCCCCCHHHHHHHHHHHhChh------hccccCcEEeeCCc
Confidence 1123567899999998886421 12256777776554
|
|
| >PRK07984 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=7.6e-12 Score=120.08 Aligned_cols=218 Identities=14% Similarity=0.100 Sum_probs=142.4
Q ss_pred CCCCEEEEEcCCC--chHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhh-cCCCeEEEEecCCCHHHHHHHh
Q 047227 5 ENERLCVVTGGRG--FAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEAL-RSGRAHYVSFDLRHKAQVLQAL 81 (485)
Q Consensus 5 ~~~~~iLVtGgtG--~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~ 81 (485)
.++|+++||||++ -||+++++.|.++| ++|.+.+|.... .+. ..... ..+.+..+.+|++|++++.+++
T Consensus 4 l~~k~~lITGas~~~GIG~aia~~la~~G-~~vil~~r~~~~----~~~---~~~~~~~~~~~~~~~~Dl~~~~~v~~~~ 75 (262)
T PRK07984 4 LSGKRILVTGVASKLSIAYGIAQAMHREG-AELAFTYQNDKL----KGR---VEEFAAQLGSDIVLPCDVAEDASIDAMF 75 (262)
T ss_pred cCCCEEEEeCCCCCccHHHHHHHHHHHCC-CEEEEEecchhH----HHH---HHHHHhccCCceEeecCCCCHHHHHHHH
Confidence 5678999999985 89999999999999 688887765210 000 11111 1234667889999999888776
Q ss_pred c-------CCCEEEEcCCCCC------------CCCchhhhHHHHHHHHHHHHHHHHhc--CCCEEEEecCccccccCCC
Q 047227 82 Q-------GAEVVFHMAAPNS------------SINNHKLHHSVNVEGTKNVIDACAEL--KVKRLIYTSSPSVVFDGVH 140 (485)
Q Consensus 82 ~-------~~d~Vih~aa~~~------------~~~~~~~~~~~nv~~t~~ll~a~~~~--~v~r~V~~SS~~vy~~~~~ 140 (485)
+ +.|++||+||... ..++++..+++|+.+...+.+++... .-.++|++||.....
T Consensus 76 ~~~~~~~g~iD~linnAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~Iv~iss~~~~~---- 151 (262)
T PRK07984 76 AELGKVWPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAER---- 151 (262)
T ss_pred HHHHhhcCCCCEEEECCccCCccccCCcchhhcCHHHHHHHhhhhhHHHHHHHHHHHHHhcCCcEEEEEecCCCCC----
Confidence 3 3799999999321 11234466789999888887776432 125799999864321
Q ss_pred CcCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCC--ChHHHHHHHHcCCCeEEec
Q 047227 141 GIINGNEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRL--LVPSLVAAARAGKSKFIIG 215 (485)
Q Consensus 141 ~~~~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~--~~~~~~~~~~~g~~~~~~g 215 (485)
+......|+.+|...+.+.+.++.+ .|+++.++.||.+--+.... -............
T Consensus 152 -----------~~~~~~~Y~asKaal~~l~~~la~el~~~gIrVn~i~PG~v~T~~~~~~~~~~~~~~~~~~~~------ 214 (262)
T PRK07984 152 -----------AIPNYNVMGLAKASLEANVRYMANAMGPEGVRVNAISAGPIRTLAASGIKDFRKMLAHCEAVT------ 214 (262)
T ss_pred -----------CCCCcchhHHHHHHHHHHHHHHHHHhcccCcEEeeeecCcccchHHhcCCchHHHHHHHHHcC------
Confidence 1223457999999999999887653 58999999999886531110 0111111111111
Q ss_pred CCCceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCC
Q 047227 216 DGNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNM 260 (485)
Q Consensus 216 ~g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~ 260 (485)
....+..++|+|.++..++.... ....|+.+.+.++
T Consensus 215 ---p~~r~~~pedva~~~~~L~s~~~------~~itG~~i~vdgg 250 (262)
T PRK07984 215 ---PIRRTVTIEDVGNSAAFLCSDLS------AGISGEVVHVDGG 250 (262)
T ss_pred ---CCcCCCCHHHHHHHHHHHcCccc------ccccCcEEEECCC
Confidence 11235678999999998865211 2256777777665
|
|
| >TIGR01500 sepiapter_red sepiapterin reductase | Back alignment and domain information |
|---|
Probab=99.48 E-value=6.3e-13 Score=127.23 Aligned_cols=202 Identities=15% Similarity=0.115 Sum_probs=132.8
Q ss_pred EEEEEcCCCchHHHHHHHHHh----cCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcC-
Q 047227 9 LCVVTGGRGFAARHLVEMLIR----YDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQG- 83 (485)
Q Consensus 9 ~iLVtGgtG~iG~~l~~~Ll~----~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~- 83 (485)
.+|||||+|.||.++++.|.+ .| ++|.+++|..........+ +.......++.++.+|+.|.+++.++++.
T Consensus 2 ~vlItGas~GIG~~~a~~la~~~~~~g-~~V~~~~r~~~~~~~~~~~---l~~~~~~~~v~~~~~Dl~~~~~v~~~~~~~ 77 (256)
T TIGR01500 2 VCLVTGASRGFGRTIAQELAKCLKSPG-SVLVLSARNDEALRQLKAE---IGAERSGLRVVRVSLDLGAEAGLEQLLKAL 77 (256)
T ss_pred EEEEecCCCchHHHHHHHHHHhhccCC-cEEEEEEcCHHHHHHHHHH---HHhcCCCceEEEEEeccCCHHHHHHHHHHH
Confidence 589999999999999999997 68 6899988864321110000 11101123688899999999988776642
Q ss_pred ----------CCEEEEcCCCCC----------CCCchhhhHHHHHHHHHHHHHHHHhc-----C-CCEEEEecCcccccc
Q 047227 84 ----------AEVVFHMAAPNS----------SINNHKLHHSVNVEGTKNVIDACAEL-----K-VKRLIYTSSPSVVFD 137 (485)
Q Consensus 84 ----------~d~Vih~aa~~~----------~~~~~~~~~~~nv~~t~~ll~a~~~~-----~-v~r~V~~SS~~vy~~ 137 (485)
.|+|||+||... ..++....+++|+.++..+.+++... + ..++|++||...+.
T Consensus 78 ~~~~g~~~~~~~~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~~~l~~~~~~~~~iv~isS~~~~~- 156 (256)
T TIGR01500 78 RELPRPKGLQRLLLINNAGTLGDVSKGFVDLSDSTQVQNYWALNLTSMLCLTSSVLKAFKDSPGLNRTVVNISSLCAIQ- 156 (256)
T ss_pred HhccccCCCceEEEEeCCcccCccccccccCCCHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCCCCCEEEEECCHHhCC-
Confidence 258999999321 11244578999999988777665432 2 35899999975532
Q ss_pred CCCCcCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCCh-----HHHHHHHHcCC
Q 047227 138 GVHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLLV-----PSLVAAARAGK 209 (485)
Q Consensus 138 ~~~~~~~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~~-----~~~~~~~~~g~ 209 (485)
+......|+.+|...+.+.+.++.+ .++++.++.||.+-.+...... +.........
T Consensus 157 --------------~~~~~~~Y~asKaal~~l~~~la~e~~~~~i~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~- 221 (256)
T TIGR01500 157 --------------PFKGWALYCAGKAARDMLFQVLALEEKNPNVRVLNYAPGVLDTDMQQQVREESVDPDMRKGLQEL- 221 (256)
T ss_pred --------------CCCCchHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHhcCChhHHHHHHHH-
Confidence 1234567999999999999887643 5799999999998654211000 0001111110
Q ss_pred CeEEecCCCceeecccHHHHHHHHHHHHH
Q 047227 210 SKFIIGDGNNVYDFTYVANVAHAHICAER 238 (485)
Q Consensus 210 ~~~~~g~g~~~~~~i~v~D~a~a~~~~~~ 238 (485)
.....+..++|+|.+++.+++
T Consensus 222 --------~~~~~~~~p~eva~~~~~l~~ 242 (256)
T TIGR01500 222 --------KAKGKLVDPKVSAQKLLSLLE 242 (256)
T ss_pred --------HhcCCCCCHHHHHHHHHHHHh
Confidence 011236779999999998875
|
This model describes sepiapterin reductase, a member of the short chain dehydrogenase/reductase family. The enzyme catalyzes the last step in the biosynthesis of tetrahydrobiopterin. A similar enzyme in Bacillus cereus was isolated for its ability to convert benzil to (S)-benzoin, a property sepiapterin reductase also shares. Cutoff scores for this model are set such that benzil reductase scores between trusted and noise cutoffs. |
| >PRK08415 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=3e-12 Score=123.75 Aligned_cols=219 Identities=11% Similarity=0.077 Sum_probs=143.1
Q ss_pred CCCEEEEEcCC--CchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc-
Q 047227 6 NERLCVVTGGR--GFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ- 82 (485)
Q Consensus 6 ~~~~iLVtGgt--G~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~- 82 (485)
.+|++|||||+ +-||.++++.|.++| ++|.+.+|.... .+...-....+ ... ..+.+|++|.+++.++++
T Consensus 4 ~~k~~lItGas~~~GIG~aiA~~la~~G-~~Vil~~r~~~~----~~~~~~~~~~~-~~~-~~~~~Dv~d~~~v~~~~~~ 76 (274)
T PRK08415 4 KGKKGLIVGVANNKSIAYGIAKACFEQG-AELAFTYLNEAL----KKRVEPIAQEL-GSD-YVYELDVSKPEHFKSLAES 76 (274)
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHHHCC-CEEEEEecCHHH----HHHHHHHHHhc-CCc-eEEEecCCCHHHHHHHHHH
Confidence 46899999997 799999999999999 688888775320 00000011111 122 578899999998877764
Q ss_pred ------CCCEEEEcCCCCC-----------CCCchhhhHHHHHHHHHHHHHHHHhc--CCCEEEEecCccccccCCCCcC
Q 047227 83 ------GAEVVFHMAAPNS-----------SINNHKLHHSVNVEGTKNVIDACAEL--KVKRLIYTSSPSVVFDGVHGII 143 (485)
Q Consensus 83 ------~~d~Vih~aa~~~-----------~~~~~~~~~~~nv~~t~~ll~a~~~~--~v~r~V~~SS~~vy~~~~~~~~ 143 (485)
+.|++||+||... +.++++..+++|+.++..+.+++... .-.++|++||.+...
T Consensus 77 i~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~g~Iv~isS~~~~~------- 149 (274)
T PRK08415 77 LKKDLGKIDFIVHSVAFAPKEALEGSFLETSKEAFNIAMEISVYSLIELTRALLPLLNDGASVLTLSYLGGVK------- 149 (274)
T ss_pred HHHHcCCCCEEEECCccCcccccccccccCCHHHHHHHhhhhhHHHHHHHHHHHHHhccCCcEEEEecCCCcc-------
Confidence 3799999999321 12345678999999998887776642 125899999854321
Q ss_pred CCCCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCC--hHHHHHHHHcCCCeEEecCCC
Q 047227 144 NGNEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLL--VPSLVAAARAGKSKFIIGDGN 218 (485)
Q Consensus 144 ~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~--~~~~~~~~~~g~~~~~~g~g~ 218 (485)
+......|+.+|+..+.+.+.++.+ +|+++.++.||.+-.+..... ........... .
T Consensus 150 --------~~~~~~~Y~asKaal~~l~~~la~el~~~gIrVn~v~PG~v~T~~~~~~~~~~~~~~~~~~~---------~ 212 (274)
T PRK08415 150 --------YVPHYNVMGVAKAALESSVRYLAVDLGKKGIRVNAISAGPIKTLAASGIGDFRMILKWNEIN---------A 212 (274)
T ss_pred --------CCCcchhhhhHHHHHHHHHHHHHHHhhhcCeEEEEEecCccccHHHhccchhhHHhhhhhhh---------C
Confidence 1123457999999999998887753 579999999999875421110 00000000000 0
Q ss_pred ceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCC
Q 047227 219 NVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNME 261 (485)
Q Consensus 219 ~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~ 261 (485)
....+..++|+|.+++.++.... .-..|+.+.+.++.
T Consensus 213 pl~r~~~pedva~~v~fL~s~~~------~~itG~~i~vdGG~ 249 (274)
T PRK08415 213 PLKKNVSIEEVGNSGMYLLSDLS------SGVTGEIHYVDAGY 249 (274)
T ss_pred chhccCCHHHHHHHHHHHhhhhh------hcccccEEEEcCcc
Confidence 11235678999999998865221 12567777776653
|
|
| >PLN02780 ketoreductase/ oxidoreductase | Back alignment and domain information |
|---|
Probab=99.47 E-value=6.6e-13 Score=131.05 Aligned_cols=196 Identities=17% Similarity=0.117 Sum_probs=131.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCC--HHHH---HHH
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRH--KAQV---LQA 80 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d--~~~l---~~~ 80 (485)
.+++++||||||.||.++++.|.++| ++|.+++|+.........+ +.......++..+.+|+.+ .+.+ .+.
T Consensus 52 ~g~~~lITGAs~GIG~alA~~La~~G-~~Vil~~R~~~~l~~~~~~---l~~~~~~~~~~~~~~Dl~~~~~~~~~~l~~~ 127 (320)
T PLN02780 52 YGSWALVTGPTDGIGKGFAFQLARKG-LNLVLVARNPDKLKDVSDS---IQSKYSKTQIKTVVVDFSGDIDEGVKRIKET 127 (320)
T ss_pred cCCEEEEeCCCcHHHHHHHHHHHHCC-CCEEEEECCHHHHHHHHHH---HHHHCCCcEEEEEEEECCCCcHHHHHHHHHH
Confidence 46899999999999999999999999 5899998875421110000 1111112357788899985 3333 333
Q ss_pred hcC--CCEEEEcCCCCC---------CCCchhhhHHHHHHHHHHHHHHHH----hcCCCEEEEecCccccccCCCCcCCC
Q 047227 81 LQG--AEVVFHMAAPNS---------SINNHKLHHSVNVEGTKNVIDACA----ELKVKRLIYTSSPSVVFDGVHGIING 145 (485)
Q Consensus 81 ~~~--~d~Vih~aa~~~---------~~~~~~~~~~~nv~~t~~ll~a~~----~~~v~r~V~~SS~~vy~~~~~~~~~~ 145 (485)
+.+ .|++||+||... +.++.+..+++|+.++.++.+++. +.+..++|++||...+..+
T Consensus 128 ~~~~didilVnnAG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~g~IV~iSS~a~~~~~------- 200 (320)
T PLN02780 128 IEGLDVGVLINNVGVSYPYARFFHEVDEELLKNLIKVNVEGTTKVTQAVLPGMLKRKKGAIINIGSGAAIVIP------- 200 (320)
T ss_pred hcCCCccEEEEecCcCCCCCcccccCCHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCcEEEEEechhhccCC-------
Confidence 444 559999999421 112345688999999998888764 4456799999997664200
Q ss_pred CCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCceee
Q 047227 146 NEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYD 222 (485)
Q Consensus 146 ~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~ 222 (485)
+......|+.||+..+.+.+.++.+ .|+++.+++||.+-.+-.. ..... ..
T Consensus 201 ------~~p~~~~Y~aSKaal~~~~~~L~~El~~~gI~V~~v~PG~v~T~~~~---------~~~~~-----------~~ 254 (320)
T PLN02780 201 ------SDPLYAVYAATKAYIDQFSRCLYVEYKKSGIDVQCQVPLYVATKMAS---------IRRSS-----------FL 254 (320)
T ss_pred ------CCccchHHHHHHHHHHHHHHHHHHHHhccCeEEEEEeeCceecCccc---------ccCCC-----------CC
Confidence 0123568999999999998887643 5899999999998654211 00000 11
Q ss_pred cccHHHHHHHHHHHHH
Q 047227 223 FTYVANVAHAHICAER 238 (485)
Q Consensus 223 ~i~v~D~a~a~~~~~~ 238 (485)
....+++|+.++..+.
T Consensus 255 ~~~p~~~A~~~~~~~~ 270 (320)
T PLN02780 255 VPSSDGYARAALRWVG 270 (320)
T ss_pred CCCHHHHHHHHHHHhC
Confidence 3468899998887754
|
|
| >PRK08159 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=6.2e-12 Score=121.42 Aligned_cols=220 Identities=12% Similarity=0.060 Sum_probs=144.4
Q ss_pred CCCCEEEEEcCC--CchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc
Q 047227 5 ENERLCVVTGGR--GFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ 82 (485)
Q Consensus 5 ~~~~~iLVtGgt--G~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~ 82 (485)
+.++++|||||+ +-||.++++.|.++| ++|.+..|.... .+....+...+ .....+.+|++|++++.++++
T Consensus 8 ~~~k~~lItGas~~~GIG~aia~~la~~G-~~V~l~~r~~~~----~~~~~~l~~~~--~~~~~~~~Dl~~~~~v~~~~~ 80 (272)
T PRK08159 8 MAGKRGLILGVANNRSIAWGIAKACRAAG-AELAFTYQGDAL----KKRVEPLAAEL--GAFVAGHCDVTDEASIDAVFE 80 (272)
T ss_pred ccCCEEEEECCCCCCcHHHHHHHHHHHCC-CEEEEEcCchHH----HHHHHHHHHhc--CCceEEecCCCCHHHHHHHHH
Confidence 456899999997 899999999999999 688877664210 00000011111 235578999999998887764
Q ss_pred -------CCCEEEEcCCCCC-----------CCCchhhhHHHHHHHHHHHHHHHHhc--CCCEEEEecCccccccCCCCc
Q 047227 83 -------GAEVVFHMAAPNS-----------SINNHKLHHSVNVEGTKNVIDACAEL--KVKRLIYTSSPSVVFDGVHGI 142 (485)
Q Consensus 83 -------~~d~Vih~aa~~~-----------~~~~~~~~~~~nv~~t~~ll~a~~~~--~v~r~V~~SS~~vy~~~~~~~ 142 (485)
+.|++||+||... ..++++..+++|+.++..+.+++... +-.++|++||.....
T Consensus 81 ~~~~~~g~iD~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~g~Iv~iss~~~~~------ 154 (272)
T PRK08159 81 TLEKKWGKLDFVVHAIGFSDKDELTGRYVDTSRDNFTMTMDISVYSFTAVAQRAEKLMTDGGSILTLTYYGAEK------ 154 (272)
T ss_pred HHHHhcCCCcEEEECCcccCccccccCcccCCHHHHHHHHhHHHHHHHHHHHHHHHhcCCCceEEEEecccccc------
Confidence 3799999999321 12356778899999999998887653 125899999854321
Q ss_pred CCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCC--hHHHHHHHHcCCCeEEecCC
Q 047227 143 INGNEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLL--VPSLVAAARAGKSKFIIGDG 217 (485)
Q Consensus 143 ~~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~--~~~~~~~~~~g~~~~~~g~g 217 (485)
+......|+.+|+..+.+.+.++.+ .|+++.++.||.+-.+..... ............
T Consensus 155 ---------~~p~~~~Y~asKaal~~l~~~la~el~~~gIrVn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~-------- 217 (272)
T PRK08159 155 ---------VMPHYNVMGVAKAALEASVKYLAVDLGPKNIRVNAISAGPIKTLAASGIGDFRYILKWNEYNA-------- 217 (272)
T ss_pred ---------CCCcchhhhhHHHHHHHHHHHHHHHhcccCeEEEEeecCCcCCHHHhcCCcchHHHHHHHhCC--------
Confidence 1123457999999999998877643 579999999999865321100 001111101111
Q ss_pred CceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCC
Q 047227 218 NNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNME 261 (485)
Q Consensus 218 ~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~ 261 (485)
....+...+|+|++++.++.... .-..|+.+.+.++.
T Consensus 218 -p~~r~~~peevA~~~~~L~s~~~------~~itG~~i~vdgG~ 254 (272)
T PRK08159 218 -PLRRTVTIEEVGDSALYLLSDLS------RGVTGEVHHVDSGY 254 (272)
T ss_pred -cccccCCHHHHHHHHHHHhCccc------cCccceEEEECCCc
Confidence 11235678999999998865211 12567777777664
|
|
| >PRK06997 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=8.7e-12 Score=119.59 Aligned_cols=218 Identities=14% Similarity=0.083 Sum_probs=142.4
Q ss_pred CCCCEEEEEcC--CCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhc-CCCeEEEEecCCCHHHHHHHh
Q 047227 5 ENERLCVVTGG--RGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALR-SGRAHYVSFDLRHKAQVLQAL 81 (485)
Q Consensus 5 ~~~~~iLVtGg--tG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~Dl~d~~~l~~~~ 81 (485)
.+++++||||| ++-||.++++.|.++| ++|.+.++.... .+. +..... .+....+.+|++|++++.+++
T Consensus 4 l~~k~vlItGas~~~GIG~a~a~~l~~~G-~~v~~~~~~~~~----~~~---~~~~~~~~~~~~~~~~Dv~d~~~v~~~~ 75 (260)
T PRK06997 4 LAGKRILITGLLSNRSIAYGIAKACKREG-AELAFTYVGDRF----KDR---ITEFAAEFGSDLVFPCDVASDEQIDALF 75 (260)
T ss_pred cCCcEEEEeCCCCCCcHHHHHHHHHHHCC-CeEEEEccchHH----HHH---HHHHHHhcCCcceeeccCCCHHHHHHHH
Confidence 45689999996 6799999999999999 688887654210 010 111111 122346889999999888776
Q ss_pred c-------CCCEEEEcCCCCC------------CCCchhhhHHHHHHHHHHHHHHHHhc--CCCEEEEecCccccccCCC
Q 047227 82 Q-------GAEVVFHMAAPNS------------SINNHKLHHSVNVEGTKNVIDACAEL--KVKRLIYTSSPSVVFDGVH 140 (485)
Q Consensus 82 ~-------~~d~Vih~aa~~~------------~~~~~~~~~~~nv~~t~~ll~a~~~~--~v~r~V~~SS~~vy~~~~~ 140 (485)
+ +.|++||+||... ..++++..+++|+.++..+.+++... +-.++|++||.....
T Consensus 76 ~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~l~~~~lp~m~~~g~Ii~iss~~~~~---- 151 (260)
T PRK06997 76 ASLGQHWDGLDGLVHSIGFAPREAIAGDFLDGLSRENFRIAHDISAYSFPALAKAALPMLSDDASLLTLSYLGAER---- 151 (260)
T ss_pred HHHHHHhCCCcEEEEccccCCccccccccchhcCHHHHHHHHHhhhHHHHHHHHHHHHhcCCCceEEEEecccccc----
Confidence 4 3899999998321 11245567899999998888776643 235899999865421
Q ss_pred CcCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhC---CCCceEEEEecCCcccCCCCCC--hHHHHHHHHcCCCeEEec
Q 047227 141 GIINGNEALPYPPKHNDFYSATKAEGEALVIKANG---TNGLLTCCIRPSSIFGPGDRLL--VPSLVAAARAGKSKFIIG 215 (485)
Q Consensus 141 ~~~~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~---~~g~~~~ilRp~~v~Gp~~~~~--~~~~~~~~~~g~~~~~~g 215 (485)
+......|+.+|+..+.+.+.++. .+|+++.++.||.+-.+-.... ............
T Consensus 152 -----------~~~~~~~Y~asKaal~~l~~~la~el~~~gIrVn~i~PG~v~T~~~~~~~~~~~~~~~~~~~~------ 214 (260)
T PRK06997 152 -----------VVPNYNTMGLAKASLEASVRYLAVSLGPKGIRANGISAGPIKTLAASGIKDFGKILDFVESNA------ 214 (260)
T ss_pred -----------CCCCcchHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCccccchhccccchhhHHHHHHhcC------
Confidence 112345799999999999887764 3589999999998865421111 011111111111
Q ss_pred CCCceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCC
Q 047227 216 DGNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNM 260 (485)
Q Consensus 216 ~g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~ 260 (485)
....+..++|+|+++..++.... .-..|+.+.+.++
T Consensus 215 ---p~~r~~~pedva~~~~~l~s~~~------~~itG~~i~vdgg 250 (260)
T PRK06997 215 ---PLRRNVTIEEVGNVAAFLLSDLA------SGVTGEITHVDSG 250 (260)
T ss_pred ---cccccCCHHHHHHHHHHHhCccc------cCcceeEEEEcCC
Confidence 11235678999999998865211 2256777777654
|
|
| >PRK06484 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.3e-12 Score=138.21 Aligned_cols=200 Identities=19% Similarity=0.197 Sum_probs=138.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc---
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ--- 82 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 82 (485)
+++++|||||++.||.++++.|.++| ++|.+++|....... ....+ ..++..+.+|++|++++.++++
T Consensus 4 ~~k~~lITGas~gIG~aia~~l~~~G-~~V~~~~r~~~~~~~-------~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~ 74 (520)
T PRK06484 4 QSRVVLVTGAAGGIGRAACQRFARAG-DQVVVADRNVERARE-------RADSL-GPDHHALAMDVSDEAQIREGFEQLH 74 (520)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHH-------HHHHh-CCceeEEEeccCCHHHHHHHHHHHH
Confidence 46899999999999999999999999 689888876432110 11111 2457789999999998877764
Q ss_pred ----CCCEEEEcCCCC---------CCCCchhhhHHHHHHHHHHHHHHHHhc----CC-CEEEEecCccccccCCCCcCC
Q 047227 83 ----GAEVVFHMAAPN---------SSINNHKLHHSVNVEGTKNVIDACAEL----KV-KRLIYTSSPSVVFDGVHGIIN 144 (485)
Q Consensus 83 ----~~d~Vih~aa~~---------~~~~~~~~~~~~nv~~t~~ll~a~~~~----~v-~r~V~~SS~~vy~~~~~~~~~ 144 (485)
++|++||+||.. .+.++++..+++|+.++..+.+++... +- .++|++||.....
T Consensus 75 ~~~g~iD~li~nag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~~iv~isS~~~~~-------- 146 (520)
T PRK06484 75 REFGRIDVLVNNAGVTDPTMTATLDTTLEEFARLQAINLTGAYLVAREALRLMIEQGHGAAIVNVASGAGLV-------- 146 (520)
T ss_pred HHhCCCCEEEECCCcCCCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCeEEEECCcccCC--------
Confidence 389999999841 122356778999999999998887653 33 3899999966542
Q ss_pred CCCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCChH--HH-HHHHHcCCCeEEecCCC
Q 047227 145 GNEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLLVP--SL-VAAARAGKSKFIIGDGN 218 (485)
Q Consensus 145 ~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~~~--~~-~~~~~~g~~~~~~g~g~ 218 (485)
+......|+.+|...+.+.+.++.+ .++++++++|+.+-.+....... .. ........
T Consensus 147 -------~~~~~~~Y~asKaal~~l~~~la~e~~~~~i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~--------- 210 (520)
T PRK06484 147 -------ALPKRTAYSASKAAVISLTRSLACEWAAKGIRVNAVLPGYVRTQMVAELERAGKLDPSAVRSRI--------- 210 (520)
T ss_pred -------CCCCCchHHHHHHHHHHHHHHHHHHhhhhCeEEEEEccCCcCchhhhhhcccchhhhHHHHhcC---------
Confidence 1123467999999999998877654 47999999999886553211100 00 00011100
Q ss_pred ceeecccHHHHHHHHHHHHH
Q 047227 219 NVYDFTYVANVAHAHICAER 238 (485)
Q Consensus 219 ~~~~~i~v~D~a~a~~~~~~ 238 (485)
....+...+|+|+++..++.
T Consensus 211 ~~~~~~~~~~va~~v~~l~~ 230 (520)
T PRK06484 211 PLGRLGRPEEIAEAVFFLAS 230 (520)
T ss_pred CCCCCcCHHHHHHHHHHHhC
Confidence 11124578999999887765
|
|
| >KOG4039 consensus Serine/threonine kinase TIP30/CC3 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.41 E-value=2e-12 Score=110.40 Aligned_cols=160 Identities=19% Similarity=0.184 Sum_probs=127.8
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCc-eEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcC
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMF-SVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQG 83 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~ 83 (485)
+++|..+|.|+||-.|+.+++++++.+.+ .|+++.|.... ++. ....+.....|...-+++...++|
T Consensus 16 mq~~s~fvlGAtG~~G~~llk~~~E~~~FSKV~~i~RR~~~--d~a----------t~k~v~q~~vDf~Kl~~~a~~~qg 83 (238)
T KOG4039|consen 16 MQNMSGFVLGATGLCGGGLLKHAQEAPQFSKVYAILRRELP--DPA----------TDKVVAQVEVDFSKLSQLATNEQG 83 (238)
T ss_pred hhccceEEEeccccccHHHHHHHHhcccceeEEEEEeccCC--Ccc----------ccceeeeEEechHHHHHHHhhhcC
Confidence 45789999999999999999999999764 78887776421 111 124577778898888889999999
Q ss_pred CCEEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCccccccCCCCcCCCCCCCCCCCCCCchHHHHH
Q 047227 84 AEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDFYSATK 163 (485)
Q Consensus 84 ~d~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy~~~~~~~~~~~e~~~~~~~~~~~Y~~sK 163 (485)
+|+.|.+-|........+.++.+.......+.++|++.||++|+.+||.++- .+..-.|-..|
T Consensus 84 ~dV~FcaLgTTRgkaGadgfykvDhDyvl~~A~~AKe~Gck~fvLvSS~GAd-----------------~sSrFlY~k~K 146 (238)
T KOG4039|consen 84 PDVLFCALGTTRGKAGADGFYKVDHDYVLQLAQAAKEKGCKTFVLVSSAGAD-----------------PSSRFLYMKMK 146 (238)
T ss_pred CceEEEeecccccccccCceEeechHHHHHHHHHHHhCCCeEEEEEeccCCC-----------------cccceeeeecc
Confidence 9999999885554455677888888899999999999999999999997651 23445788999
Q ss_pred HHHHHHHHHHhCCCCceEEEEecCCcccCCCCC
Q 047227 164 AEGEALVIKANGTNGLLTCCIRPSSIFGPGDRL 196 (485)
Q Consensus 164 ~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~~ 196 (485)
.+.|+-+.++. --.+.|+|||.+.|.+...
T Consensus 147 GEvE~~v~eL~---F~~~~i~RPG~ll~~R~es 176 (238)
T KOG4039|consen 147 GEVERDVIELD---FKHIIILRPGPLLGERTES 176 (238)
T ss_pred chhhhhhhhcc---ccEEEEecCcceecccccc
Confidence 99999998864 2358999999999987653
|
|
| >TIGR01289 LPOR light-dependent protochlorophyllide reductase | Back alignment and domain information |
|---|
Probab=99.41 E-value=4.8e-12 Score=124.82 Aligned_cols=178 Identities=17% Similarity=0.080 Sum_probs=119.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhh--cCCCeEEEEecCCCHHHHHHHhc--
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEAL--RSGRAHYVSFDLRHKAQVLQALQ-- 82 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~Dl~d~~~l~~~~~-- 82 (485)
+++++||||++.||.++++.|.++|.++|.+++|....... ....+ ....+..+.+|++|.+++.++++
T Consensus 3 ~k~vlITGas~GIG~aia~~L~~~G~~~V~l~~r~~~~~~~-------~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~ 75 (314)
T TIGR01289 3 KPTVIITGASSGLGLYAAKALAATGEWHVIMACRDFLKAEQ-------AAKSLGMPKDSYTIMHLDLGSLDSVRQFVQQF 75 (314)
T ss_pred CCEEEEECCCChHHHHHHHHHHHcCCCEEEEEeCCHHHHHH-------HHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHH
Confidence 47899999999999999999999993378888776432110 11111 12457788999999988776653
Q ss_pred -----CCCEEEEcCCCCC--------CCCchhhhHHHHHHHHHHHHHHHH----hcC--CCEEEEecCccccccCCCC--
Q 047227 83 -----GAEVVFHMAAPNS--------SINNHKLHHSVNVEGTKNVIDACA----ELK--VKRLIYTSSPSVVFDGVHG-- 141 (485)
Q Consensus 83 -----~~d~Vih~aa~~~--------~~~~~~~~~~~nv~~t~~ll~a~~----~~~--v~r~V~~SS~~vy~~~~~~-- 141 (485)
+.|++||+||... +.++.+..+++|+.++..+.+++. +.+ ..|+|++||...+......
T Consensus 76 ~~~~~~iD~lI~nAG~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~l~~m~~~~~~~g~IV~vsS~~~~~~~~~~~~ 155 (314)
T TIGR01289 76 RESGRPLDALVCNAAVYFPTAKEPRFTADGFELSVGTNHLGHFLLCNLLLDDLKNSPNKDKRLIIVGSITGNTNTLAGNV 155 (314)
T ss_pred HHhCCCCCEEEECCCccccCccccccCHHHHHHHHhhhhhHHHHHHHHHHHHHHhCCCCCCeEEEEecCccccccCCCcC
Confidence 4899999999321 123456688999999877755543 332 3699999998765321000
Q ss_pred --cCCCCC--------------CCCCCCCCCchHHHHHHHHHHHHHHHhCC----CCceEEEEecCCccc
Q 047227 142 --IINGNE--------------ALPYPPKHNDFYSATKAEGEALVIKANGT----NGLLTCCIRPSSIFG 191 (485)
Q Consensus 142 --~~~~~e--------------~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~----~g~~~~ilRp~~v~G 191 (485)
....++ ....+..+...|+.||.+...+.+.++++ .|+.+++++||.+..
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~SK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~~ 225 (314)
T TIGR01289 156 PPKANLGDLSGLAAGFKAPIAMIDGKEFKGAKAYKDSKVCNMLTVRELHRRFHDETGITFASLYPGCIAD 225 (314)
T ss_pred CCcccccccccccccCCCcccccCCCCcchhhhHHHhHHHHHHHHHHHHHHhccCCCeEEEEecCCcccC
Confidence 000000 00012245567999999988777766543 479999999999853
|
This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form. |
| >KOG4288 consensus Predicted oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.3e-12 Score=114.79 Aligned_cols=196 Identities=21% Similarity=0.182 Sum_probs=142.5
Q ss_pred EEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCCCEEE
Q 047227 9 LCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGAEVVF 88 (485)
Q Consensus 9 ~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~d~Vi 88 (485)
+.++.|+.||.|+++++...+.|| .|.++.++..+... +. -...++++++|.....-+...+.++..|+
T Consensus 54 ~tlvlggnpfsgs~vlk~A~~vv~-svgilsen~~k~~l--------~s--w~~~vswh~gnsfssn~~k~~l~g~t~v~ 122 (283)
T KOG4288|consen 54 WTLVLGGNPFSGSEVLKNATNVVH-SVGILSENENKQTL--------SS--WPTYVSWHRGNSFSSNPNKLKLSGPTFVY 122 (283)
T ss_pred HHhhhcCCCcchHHHHHHHHhhce-eeeEeecccCcchh--------hC--CCcccchhhccccccCcchhhhcCCcccH
Confidence 689999999999999999999995 78877776432111 11 13468888898877666777778899999
Q ss_pred EcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCccccccCCCCcCCCCCCCCCCCCCCchHHHHHHHHHH
Q 047227 89 HMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDFYSATKAEGEA 168 (485)
Q Consensus 89 h~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy~~~~~~~~~~~e~~~~~~~~~~~Y~~sK~~~E~ 168 (485)
-+++ ...+......+|-....+-..++.+.|+++|+|+|-. .|+ .+ +..| ..|-.+|..+|.
T Consensus 123 e~~g---gfgn~~~m~~ing~ani~a~kaa~~~gv~~fvyISa~-d~~------------~~-~~i~-rGY~~gKR~AE~ 184 (283)
T KOG4288|consen 123 EMMG---GFGNIILMDRINGTANINAVKAAAKAGVPRFVYISAH-DFG------------LP-PLIP-RGYIEGKREAEA 184 (283)
T ss_pred HHhc---CccchHHHHHhccHhhHHHHHHHHHcCCceEEEEEhh-hcC------------CC-Cccc-hhhhccchHHHH
Confidence 8886 3345567788898888999999999999999999953 221 00 1223 379999999999
Q ss_pred HHHHHhCCCCceEEEEecCCcccCCCC----C---ChHHHHHHHHcCCC-----eEEecCCCceeecccHHHHHHHHHHH
Q 047227 169 LVIKANGTNGLLTCCIRPSSIFGPGDR----L---LVPSLVAAARAGKS-----KFIIGDGNNVYDFTYVANVAHAHICA 236 (485)
Q Consensus 169 ~~~~~~~~~g~~~~ilRp~~v~Gp~~~----~---~~~~~~~~~~~g~~-----~~~~g~g~~~~~~i~v~D~a~a~~~~ 236 (485)
.+.. .++.+-.++|||.+||.+.- . .+...+.++.++-. +.+. +.-..+.+.++++|.+.+.+
T Consensus 185 Ell~---~~~~rgiilRPGFiyg~R~v~g~~~pL~~vg~pl~~~~~~a~k~~~kLp~l--g~l~~ppvnve~VA~aal~a 259 (283)
T KOG4288|consen 185 ELLK---KFRFRGIILRPGFIYGTRNVGGIKSPLHTVGEPLEMVLKFALKPLNKLPLL--GPLLAPPVNVESVALAALKA 259 (283)
T ss_pred HHHH---hcCCCceeeccceeecccccCcccccHHhhhhhHHHHHHhhhchhhcCccc--ccccCCCcCHHHHHHHHHHh
Confidence 9888 45678899999999997431 1 12222333333321 3333 44678899999999999988
Q ss_pred HH
Q 047227 237 ER 238 (485)
Q Consensus 237 ~~ 238 (485)
++
T Consensus 260 i~ 261 (283)
T KOG4288|consen 260 IE 261 (283)
T ss_pred cc
Confidence 66
|
|
| >KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.37 E-value=4.3e-12 Score=119.91 Aligned_cols=166 Identities=16% Similarity=0.123 Sum_probs=113.0
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHh---
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQAL--- 81 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~--- 81 (485)
..+|.|+|||++.-||.+++..|.++|. .+.++.|..... +.. ...+...+...++.++++|++|.+++.+.+
T Consensus 10 ~~~kvVvITGASsGIG~~lA~~la~~G~-~l~lvar~~rrl-~~v--~~~l~~~~~~~~v~~~~~Dvs~~~~~~~~~~~~ 85 (282)
T KOG1205|consen 10 LAGKVVLITGASSGIGEALAYELAKRGA-KLVLVARRARRL-ERV--AEELRKLGSLEKVLVLQLDVSDEESVKKFVEWA 85 (282)
T ss_pred hCCCEEEEeCCCcHHHHHHHHHHHhCCC-ceEEeehhhhhH-HHH--HHHHHHhCCcCccEEEeCccCCHHHHHHHHHHH
Confidence 3578999999999999999999999995 444444432211 111 011222232336999999999999888665
Q ss_pred ----cCCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHH----HHhcCCCEEEEecCccccccCCCCcCCCC
Q 047227 82 ----QGAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDA----CAELKVKRLIYTSSPSVVFDGVHGIINGN 146 (485)
Q Consensus 82 ----~~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a----~~~~~v~r~V~~SS~~vy~~~~~~~~~~~ 146 (485)
.+.|++||+||... ...+....+++|+-|+..+-.+ +++.+-.|+|.+||..-+.
T Consensus 86 ~~~fg~vDvLVNNAG~~~~~~~~~~~~~~~~~~mdtN~~G~V~~Tk~alp~m~~r~~GhIVvisSiaG~~---------- 155 (282)
T KOG1205|consen 86 IRHFGRVDVLVNNAGISLVGFLEDTDIEDVRNVMDTNVFGTVYLTKAALPSMKKRNDGHIVVISSIAGKM---------- 155 (282)
T ss_pred HHhcCCCCEEEecCccccccccccCcHHHHHHHhhhhchhhHHHHHHHHHHhhhcCCCeEEEEecccccc----------
Confidence 35999999999221 2224456889999887776555 4455556999999976542
Q ss_pred CCCCCCCCCCchHHHHHHHHHHHHHHHhCCCCceEE----EEecCCc
Q 047227 147 EALPYPPKHNDFYSATKAEGEALVIKANGTNGLLTC----CIRPSSI 189 (485)
Q Consensus 147 e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~g~~~~----ilRp~~v 189 (485)
+....+.|+.||.+.+.+...+..+..-..+ ++-||.|
T Consensus 156 -----~~P~~~~Y~ASK~Al~~f~etLR~El~~~~~~i~i~V~PG~V 197 (282)
T KOG1205|consen 156 -----PLPFRSIYSASKHALEGFFETLRQELIPLGTIIIILVSPGPI 197 (282)
T ss_pred -----CCCcccccchHHHHHHHHHHHHHHHhhccCceEEEEEecCce
Confidence 1223348999999999998887765432222 4666665
|
|
| >PRK12428 3-alpha-hydroxysteroid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=2e-11 Score=115.74 Aligned_cols=205 Identities=15% Similarity=0.098 Sum_probs=135.3
Q ss_pred HHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc----CCCEEEEcCCCCCCCC
Q 047227 23 LVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ----GAEVVFHMAAPNSSIN 98 (485)
Q Consensus 23 l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~----~~d~Vih~aa~~~~~~ 98 (485)
+++.|+++| ++|++++|..... ...+++.+|++|.+++.++++ ++|+|||+||... ..
T Consensus 1 ~a~~l~~~G-~~Vv~~~r~~~~~----------------~~~~~~~~Dl~~~~~v~~~~~~~~~~iD~li~nAG~~~-~~ 62 (241)
T PRK12428 1 TARLLRFLG-ARVIGVDRREPGM----------------TLDGFIQADLGDPASIDAAVAALPGRIDALFNIAGVPG-TA 62 (241)
T ss_pred ChHHHHhCC-CEEEEEeCCcchh----------------hhhHhhcccCCCHHHHHHHHHHhcCCCeEEEECCCCCC-CC
Confidence 468899999 6999998865311 013467899999999988876 4899999999542 34
Q ss_pred chhhhHHHHHHHHHHHHHHHHhc--CCCEEEEecCccccccCCCCcCCCCCCC--------------CCCCCCCchHHHH
Q 047227 99 NHKLHHSVNVEGTKNVIDACAEL--KVKRLIYTSSPSVVFDGVHGIINGNEAL--------------PYPPKHNDFYSAT 162 (485)
Q Consensus 99 ~~~~~~~~nv~~t~~ll~a~~~~--~v~r~V~~SS~~vy~~~~~~~~~~~e~~--------------~~~~~~~~~Y~~s 162 (485)
+++..+++|+.++..+.+++... +-.++|++||...|+.... .+..+.. ..+..+...|+.+
T Consensus 63 ~~~~~~~vN~~~~~~l~~~~~~~~~~~g~Iv~isS~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~s 140 (241)
T PRK12428 63 PVELVARVNFLGLRHLTEALLPRMAPGGAIVNVASLAGAEWPQR--LELHKALAATASFDEGAAWLAAHPVALATGYQLS 140 (241)
T ss_pred CHHHhhhhchHHHHHHHHHHHHhccCCcEEEEeCcHHhhccccc--hHHHHhhhccchHHHHHHhhhccCCCcccHHHHH
Confidence 67888999999999999998764 2369999999988752211 1100000 0133456789999
Q ss_pred HHHHHHHHHHHh----CCCCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCceeecccHHHHHHHHHHHHH
Q 047227 163 KAEGEALVIKAN----GTNGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICAER 238 (485)
Q Consensus 163 K~~~E~~~~~~~----~~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~D~a~a~~~~~~ 238 (485)
|...+.+.+.++ ...|+++.+++||.+.++-................. .....+...+|+|+++..++.
T Consensus 141 K~a~~~~~~~la~~e~~~~girvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~-------~~~~~~~~pe~va~~~~~l~s 213 (241)
T PRK12428 141 KEALILWTMRQAQPWFGARGIRVNCVAPGPVFTPILGDFRSMLGQERVDSDA-------KRMGRPATADEQAAVLVFLCS 213 (241)
T ss_pred HHHHHHHHHHHHHHhhhccCeEEEEeecCCccCcccccchhhhhhHhhhhcc-------cccCCCCCHHHHHHHHHHHcC
Confidence 999999988776 456899999999999887432211110000000000 011235678999999988754
Q ss_pred HhccccchhhccCCcEEEeeCC
Q 047227 239 ALASEVTVAEKAAGQAYFVTNM 260 (485)
Q Consensus 239 ~~~~~~~~~~~~~g~~ynv~~~ 260 (485)
... ....|+...+.++
T Consensus 214 ~~~------~~~~G~~i~vdgg 229 (241)
T PRK12428 214 DAA------RWINGVNLPVDGG 229 (241)
T ss_pred hhh------cCccCcEEEecCc
Confidence 211 1245666666554
|
|
| >PRK08303 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.5e-11 Score=117.27 Aligned_cols=179 Identities=13% Similarity=0.097 Sum_probs=120.7
Q ss_pred CCCCCCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccC---Cccchhhhhhhhc--CCCeEEEEecCCCHH
Q 047227 1 MSGEENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALE---PHEEQGILGEALR--SGRAHYVSFDLRHKA 75 (485)
Q Consensus 1 M~~~~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~---~~~~~~~~~~~~~--~~~v~~~~~Dl~d~~ 75 (485)
|+...++|++|||||++.||.++++.|++.| ++|.+++|....... ..+........+. ..++..+.+|+.|++
T Consensus 2 ~~~~l~~k~~lITGgs~GIG~aia~~la~~G-~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~ 80 (305)
T PRK08303 2 MMKPLRGKVALVAGATRGAGRGIAVELGAAG-ATVYVTGRSTRARRSEYDRPETIEETAELVTAAGGRGIAVQVDHLVPE 80 (305)
T ss_pred CCcCCCCCEEEEeCCCchHHHHHHHHHHHCC-CEEEEEecccccccccccccchHHHHHHHHHhcCCceEEEEcCCCCHH
Confidence 5556678999999999999999999999999 689988886432100 0111000111121 235778999999998
Q ss_pred HHHHHhc-------CCCEEEEcC-CCC------C-----CCCchhhhHHHHHHHHHHHHHHHHh----cCCCEEEEecCc
Q 047227 76 QVLQALQ-------GAEVVFHMA-APN------S-----SINNHKLHHSVNVEGTKNVIDACAE----LKVKRLIYTSSP 132 (485)
Q Consensus 76 ~l~~~~~-------~~d~Vih~a-a~~------~-----~~~~~~~~~~~nv~~t~~ll~a~~~----~~v~r~V~~SS~ 132 (485)
++.++++ +.|++||+| +.. . ..++....+++|+.++..+..++.. .+-.++|++||.
T Consensus 81 ~v~~~~~~~~~~~g~iDilVnnA~g~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~lp~m~~~~~g~IV~isS~ 160 (305)
T PRK08303 81 QVRALVERIDREQGRLDILVNDIWGGEKLFEWGKPVWEHSLDKGLRMLRLAIDTHLITSHFALPLLIRRPGGLVVEITDG 160 (305)
T ss_pred HHHHHHHHHHHHcCCccEEEECCcccccccccCCchhhcCHHHHHHHHHHhhHHHHHHHHHHHHHhhhCCCcEEEEECCc
Confidence 8877663 489999999 621 1 1123445678888888777666543 333589999985
Q ss_pred cccccCCCCcCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccC
Q 047227 133 SVVFDGVHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGP 192 (485)
Q Consensus 133 ~vy~~~~~~~~~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp 192 (485)
...... . +......|+.+|...+.+.+.++.+ .|+++.++.||.+-.+
T Consensus 161 ~~~~~~--------~----~~~~~~~Y~asKaal~~lt~~La~el~~~gIrVn~v~PG~v~T~ 211 (305)
T PRK08303 161 TAEYNA--------T----HYRLSVFYDLAKTSVNRLAFSLAHELAPHGATAVALTPGWLRSE 211 (305)
T ss_pred cccccC--------c----CCCCcchhHHHHHHHHHHHHHHHHHhhhcCcEEEEecCCccccH
Confidence 432100 0 1123456999999999998876643 5799999999987543
|
|
| >PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.2e-11 Score=110.04 Aligned_cols=148 Identities=20% Similarity=0.158 Sum_probs=112.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhh--cCCCeEEEEecCCCHHHHHHHhc---
Q 047227 8 RLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEAL--RSGRAHYVSFDLRHKAQVLQALQ--- 82 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~Dl~d~~~l~~~~~--- 82 (485)
|+++||||+|-||..++++|+++|.+.|.++.|... .+...-+...+ ...++.++.+|++|++++.++++
T Consensus 1 k~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~-----~~~~~~l~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 75 (167)
T PF00106_consen 1 KTVLITGASSGIGRALARALARRGARVVILTSRSED-----SEGAQELIQELKAPGAKITFIECDLSDPESIRALIEEVI 75 (167)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCH-----HHHHHHHHHHHHHTTSEEEEEESETTSHHHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCceEEEEeeeccc-----ccccccccccccccccccccccccccccccccccccccc
Confidence 579999999999999999999996568888887711 00000011111 24678999999999988887764
Q ss_pred ----CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCccccccCCCCcCCCCCCCCC
Q 047227 83 ----GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVVFDGVHGIINGNEALPY 151 (485)
Q Consensus 83 ----~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy~~~~~~~~~~~e~~~~ 151 (485)
..|++||+++... ..++....+++|+.+...+.+++...+-.++|++||.....
T Consensus 76 ~~~~~ld~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~g~iv~~sS~~~~~--------------- 140 (167)
T PF00106_consen 76 KRFGPLDILINNAGIFSDGSLDDLSEEELERVFRVNLFGPFLLAKALLPQGGGKIVNISSIAGVR--------------- 140 (167)
T ss_dssp HHHSSESEEEEECSCTTSBSGGGSHHHHHHHHHHHHTHHHHHHHHHHHHHTTEEEEEEEEGGGTS---------------
T ss_pred cccccccccccccccccccccccccchhhhhccccccceeeeeeehheeccccceEEecchhhcc---------------
Confidence 4899999999332 12345678999999999999999886667999999976642
Q ss_pred CCCCCchHHHHHHHHHHHHHHHhC
Q 047227 152 PPKHNDFYSATKAEGEALVIKANG 175 (485)
Q Consensus 152 ~~~~~~~Y~~sK~~~E~~~~~~~~ 175 (485)
+......|+.+|...+.+.+.+++
T Consensus 141 ~~~~~~~Y~askaal~~~~~~la~ 164 (167)
T PF00106_consen 141 GSPGMSAYSASKAALRGLTQSLAA 164 (167)
T ss_dssp SSTTBHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCChhHHHHHHHHHHHHHHHHH
Confidence 234567899999999999988764
|
As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A .... |
| >KOG1203 consensus Predicted dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.32 E-value=5e-11 Score=117.70 Aligned_cols=208 Identities=21% Similarity=0.220 Sum_probs=126.6
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHH-HHHHhc
Q 047227 4 EENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQ-VLQALQ 82 (485)
Q Consensus 4 ~~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~-l~~~~~ 82 (485)
+.+.+.|||+||||.+|+-+++.|+++| +.|+++.|......+.. .-.....+...+..|.....+ ...+.+
T Consensus 76 ~~~~~~VlVvGatG~vG~~iv~~llkrg-f~vra~VRd~~~a~~~~------~~~~~d~~~~~v~~~~~~~~d~~~~~~~ 148 (411)
T KOG1203|consen 76 SKKPTTVLVVGATGKVGRRIVKILLKRG-FSVRALVRDEQKAEDLL------GVFFVDLGLQNVEADVVTAIDILKKLVE 148 (411)
T ss_pred CCCCCeEEEecCCCchhHHHHHHHHHCC-CeeeeeccChhhhhhhh------cccccccccceeeeccccccchhhhhhh
Confidence 3456799999999999999999999999 69999988755332221 101113445555555444332 222332
Q ss_pred ----CCCEEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCccccccCCCCcCCCCCCCCCCC-CCCc
Q 047227 83 ----GAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVVFDGVHGIINGNEALPYPP-KHND 157 (485)
Q Consensus 83 ----~~d~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy~~~~~~~~~~~e~~~~~~-~~~~ 157 (485)
+..+|+-+++-....++-..-..+...|++|+++||+.+|++|+|++||.+.- +-..+++. .-..
T Consensus 149 ~~~~~~~~v~~~~ggrp~~ed~~~p~~VD~~g~knlvdA~~~aGvk~~vlv~si~~~----------~~~~~~~~~~~~~ 218 (411)
T KOG1203|consen 149 AVPKGVVIVIKGAGGRPEEEDIVTPEKVDYEGTKNLVDACKKAGVKRVVLVGSIGGT----------KFNQPPNILLLNG 218 (411)
T ss_pred hccccceeEEecccCCCCcccCCCcceecHHHHHHHHHHHHHhCCceEEEEEeecCc----------ccCCCchhhhhhh
Confidence 23456666652222222233457889999999999999999999999876542 11100000 0022
Q ss_pred hHHHHHHHHHHHHHHHhCCCCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCceeecccHHHHHHHHHHHH
Q 047227 158 FYSATKAEGEALVIKANGTNGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICAE 237 (485)
Q Consensus 158 ~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~D~a~a~~~~~ 237 (485)
.+..+|..+|+++.+ .|++.+++||+...-...... +.. .........+++. --.+.-.|+|+..++++
T Consensus 219 ~~~~~k~~~e~~~~~----Sgl~ytiIR~g~~~~~~~~~~-~~~----~~~~~~~~~~~~~--~~~i~r~~vael~~~al 287 (411)
T KOG1203|consen 219 LVLKAKLKAEKFLQD----SGLPYTIIRPGGLEQDTGGQR-EVV----VDDEKELLTVDGG--AYSISRLDVAELVAKAL 287 (411)
T ss_pred hhhHHHHhHHHHHHh----cCCCcEEEeccccccCCCCcc-eec----ccCcccccccccc--ceeeehhhHHHHHHHHH
Confidence 455788888888875 799999999998764322110 100 0111111111211 13566789999999887
Q ss_pred HH
Q 047227 238 RA 239 (485)
Q Consensus 238 ~~ 239 (485)
.+
T Consensus 288 l~ 289 (411)
T KOG1203|consen 288 LN 289 (411)
T ss_pred hh
Confidence 74
|
|
| >PRK05599 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.6e-11 Score=114.38 Aligned_cols=187 Identities=17% Similarity=0.120 Sum_probs=125.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhc---CCCeEEEEecCCCHHHHHHHhc--
Q 047227 8 RLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALR---SGRAHYVSFDLRHKAQVLQALQ-- 82 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~Dl~d~~~l~~~~~-- 82 (485)
|.++||||++-||.++++.|. +| ++|.+++|...... + ..+.+. ...+.++.+|+.|++++.++++
T Consensus 1 ~~vlItGas~GIG~aia~~l~-~g-~~Vil~~r~~~~~~----~---~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~~~~ 71 (246)
T PRK05599 1 MSILILGGTSDIAGEIATLLC-HG-EDVVLAARRPEAAQ----G---LASDLRQRGATSVHVLSFDAQDLDTHRELVKQT 71 (246)
T ss_pred CeEEEEeCccHHHHHHHHHHh-CC-CEEEEEeCCHHHHH----H---HHHHHHhccCCceEEEEcccCCHHHHHHHHHHH
Confidence 579999999999999999998 58 68988887643211 1 111111 1247889999999988877653
Q ss_pred -----CCCEEEEcCCCCCC-------CCchhhhHHHHHHHHHHHHHH----HHhcC-CCEEEEecCccccccCCCCcCCC
Q 047227 83 -----GAEVVFHMAAPNSS-------INNHKLHHSVNVEGTKNVIDA----CAELK-VKRLIYTSSPSVVFDGVHGIING 145 (485)
Q Consensus 83 -----~~d~Vih~aa~~~~-------~~~~~~~~~~nv~~t~~ll~a----~~~~~-v~r~V~~SS~~vy~~~~~~~~~~ 145 (485)
+.|++||+||.... ..+.....++|+.+..++..+ +++.+ -.++|++||...+-
T Consensus 72 ~~~~g~id~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~g~Iv~isS~~~~~--------- 142 (246)
T PRK05599 72 QELAGEISLAVVAFGILGDQERAETDEAHAVEIATVDYTAQVSMLTVLADELRAQTAPAAIVAFSSIAGWR--------- 142 (246)
T ss_pred HHhcCCCCEEEEecCcCCCchhhhcCcHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCCEEEEEecccccc---------
Confidence 48999999994221 112234567787777655444 44433 35899999965431
Q ss_pred CCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCceee
Q 047227 146 NEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYD 222 (485)
Q Consensus 146 ~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~ 222 (485)
+......|+.+|+..+.+.+.++.+ .|+++.++.||.+..+-.. ...+ . . -
T Consensus 143 ------~~~~~~~Y~asKaa~~~~~~~la~el~~~~I~v~~v~PG~v~T~~~~-----------~~~~-----~--~--~ 196 (246)
T PRK05599 143 ------ARRANYVYGSTKAGLDAFCQGLADSLHGSHVRLIIARPGFVIGSMTT-----------GMKP-----A--P--M 196 (246)
T ss_pred ------CCcCCcchhhHHHHHHHHHHHHHHHhcCCCceEEEecCCcccchhhc-----------CCCC-----C--C--C
Confidence 1123467999999998888876543 5799999999998754211 0000 0 0 0
Q ss_pred cccHHHHHHHHHHHHH
Q 047227 223 FTYVANVAHAHICAER 238 (485)
Q Consensus 223 ~i~v~D~a~a~~~~~~ 238 (485)
....+|+|++++.++.
T Consensus 197 ~~~pe~~a~~~~~~~~ 212 (246)
T PRK05599 197 SVYPRDVAAAVVSAIT 212 (246)
T ss_pred CCCHHHHHHHHHHHHh
Confidence 1468999999998876
|
|
| >PLN00015 protochlorophyllide reductase | Back alignment and domain information |
|---|
Probab=99.31 E-value=4.3e-11 Score=117.77 Aligned_cols=174 Identities=16% Similarity=0.049 Sum_probs=114.6
Q ss_pred EEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhh--cCCCeEEEEecCCCHHHHHHHhc------
Q 047227 11 VVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEAL--RSGRAHYVSFDLRHKAQVLQALQ------ 82 (485)
Q Consensus 11 LVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~Dl~d~~~l~~~~~------ 82 (485)
|||||++.||.++++.|.++|.++|++.+|....... ....+ ...++.++.+|+.|.+++.++++
T Consensus 1 lITGas~GIG~aia~~l~~~G~~~V~~~~r~~~~~~~-------~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~ 73 (308)
T PLN00015 1 IITGASSGLGLATAKALAETGKWHVVMACRDFLKAER-------AAKSAGMPKDSYTVMHLDLASLDSVRQFVDNFRRSG 73 (308)
T ss_pred CEeCCCChHHHHHHHHHHHCCCCEEEEEeCCHHHHHH-------HHHHhcCCCCeEEEEEecCCCHHHHHHHHHHHHhcC
Confidence 6999999999999999999994488888776431110 11111 12357888999999998877653
Q ss_pred -CCCEEEEcCCCCC--------CCCchhhhHHHHHHHHHHHHHHH----HhcC--CCEEEEecCcccccc---CCCCc-C
Q 047227 83 -GAEVVFHMAAPNS--------SINNHKLHHSVNVEGTKNVIDAC----AELK--VKRLIYTSSPSVVFD---GVHGI-I 143 (485)
Q Consensus 83 -~~d~Vih~aa~~~--------~~~~~~~~~~~nv~~t~~ll~a~----~~~~--v~r~V~~SS~~vy~~---~~~~~-~ 143 (485)
+.|++||+||... +.++.+..+++|+.++..+.+++ ++.+ ..++|++||...+.. +.... .
T Consensus 74 ~~iD~lInnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~l~~~~~~~g~IV~vsS~~~~~~~~~~~~~~~~ 153 (308)
T PLN00015 74 RPLDVLVCNAAVYLPTAKEPTFTADGFELSVGTNHLGHFLLSRLLLDDLKKSDYPSKRLIIVGSITGNTNTLAGNVPPKA 153 (308)
T ss_pred CCCCEEEECCCcCCCCCCcCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCCCEEEEEeccccccccccccCCCcc
Confidence 3799999999421 12345678999999977775554 3343 469999999765411 00000 0
Q ss_pred CC-----------CC-C----CCCCCCCCchHHHHHHHHHHHHHHHhCC----CCceEEEEecCCccc
Q 047227 144 NG-----------NE-A----LPYPPKHNDFYSATKAEGEALVIKANGT----NGLLTCCIRPSSIFG 191 (485)
Q Consensus 144 ~~-----------~e-~----~~~~~~~~~~Y~~sK~~~E~~~~~~~~~----~g~~~~ilRp~~v~G 191 (485)
.. ++ . ...+..+...|+.||+..+.+.+.++.+ .|+.+++++||.|..
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aY~~SK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~~ 221 (308)
T PLN00015 154 NLGDLRGLAGGLNGLNSSAMIDGGEFDGAKAYKDSKVCNMLTMQEFHRRYHEETGITFASLYPGCIAT 221 (308)
T ss_pred chhhhhhhhcccCCccchhhccccCCcHHHHHhHhHHHHHHHHHHHHHhhcccCCeEEEEecCCcccC
Confidence 00 00 0 0001234567999999877665655443 479999999999954
|
|
| >PRK08862 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=6.4e-11 Score=111.13 Aligned_cols=163 Identities=7% Similarity=-0.019 Sum_probs=114.0
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhh-cCCCeEEEEecCCCHHHHHHHhc-
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEAL-RSGRAHYVSFDLRHKAQVLQALQ- 82 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~- 82 (485)
..+++++||||++-||.++++.|.++| ++|.+++|....... ...... ...++..+.+|+.|++++.++++
T Consensus 3 ~~~k~~lVtGas~GIG~aia~~la~~G-~~V~~~~r~~~~l~~------~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~ 75 (227)
T PRK08862 3 IKSSIILITSAGSVLGRTISCHFARLG-ATLILCDQDQSALKD------TYEQCSALTDNVYSFQLKDFSQESIRHLFDA 75 (227)
T ss_pred CCCeEEEEECCccHHHHHHHHHHHHCC-CEEEEEcCCHHHHHH------HHHHHHhcCCCeEEEEccCCCHHHHHHHHHH
Confidence 346899999999999999999999999 688888876432110 011111 12457788899999998876652
Q ss_pred -------CCCEEEEcCCCC---CC-----CCchhhhHHHHHHHHHHHHHH----HHhcC-CCEEEEecCccccccCCCCc
Q 047227 83 -------GAEVVFHMAAPN---SS-----INNHKLHHSVNVEGTKNVIDA----CAELK-VKRLIYTSSPSVVFDGVHGI 142 (485)
Q Consensus 83 -------~~d~Vih~aa~~---~~-----~~~~~~~~~~nv~~t~~ll~a----~~~~~-v~r~V~~SS~~vy~~~~~~~ 142 (485)
+.|++||++|.. .. .++....+++|+.++..+.++ .++.+ -.++|++||...+
T Consensus 76 ~~~~~g~~iD~li~nag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~g~Iv~isS~~~~------- 148 (227)
T PRK08862 76 IEQQFNRAPDVLVNNWTSSPLPSLFDEQPSESFIQQLSSLASTLFTYGQVAAERMRKRNKKGVIVNVISHDDH------- 148 (227)
T ss_pred HHHHhCCCCCEEEECCccCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCceEEEEecCCCC-------
Confidence 589999999721 11 112344566777776665444 33333 3589999984321
Q ss_pred CCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhC---CCCceEEEEecCCcccC
Q 047227 143 INGNEALPYPPKHNDFYSATKAEGEALVIKANG---TNGLLTCCIRPSSIFGP 192 (485)
Q Consensus 143 ~~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~---~~g~~~~ilRp~~v~Gp 192 (485)
.+...|+.+|+..+.+.+.++. .+++++..+.||.+-.+
T Consensus 149 -----------~~~~~Y~asKaal~~~~~~la~el~~~~Irvn~v~PG~i~t~ 190 (227)
T PRK08862 149 -----------QDLTGVESSNALVSGFTHSWAKELTPFNIRVGGVVPSIFSAN 190 (227)
T ss_pred -----------CCcchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCcCcCC
Confidence 1245799999999998887765 36899999999988766
|
|
| >KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.30 E-value=6e-11 Score=111.13 Aligned_cols=195 Identities=16% Similarity=0.147 Sum_probs=139.3
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc--
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ-- 82 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 82 (485)
-.+..||||||++-+|+.++.++.++| .++.+.|.......+..++ .++ ..++..+.+|++|++++.+..+
T Consensus 36 v~g~~vLITGgg~GlGr~ialefa~rg-~~~vl~Din~~~~~etv~~---~~~---~g~~~~y~cdis~~eei~~~a~~V 108 (300)
T KOG1201|consen 36 VSGEIVLITGGGSGLGRLIALEFAKRG-AKLVLWDINKQGNEETVKE---IRK---IGEAKAYTCDISDREEIYRLAKKV 108 (300)
T ss_pred ccCCEEEEeCCCchHHHHHHHHHHHhC-CeEEEEeccccchHHHHHH---HHh---cCceeEEEecCCCHHHHHHHHHHH
Confidence 356899999999999999999999999 5888888765433222221 121 1379999999999988776653
Q ss_pred -----CCCEEEEcCCCC-------CCCCchhhhHHHHHHHHHHHHHH----HHhcCCCEEEEecCccccccCCCCcCCCC
Q 047227 83 -----GAEVVFHMAAPN-------SSINNHKLHHSVNVEGTKNVIDA----CAELKVKRLIYTSSPSVVFDGVHGIINGN 146 (485)
Q Consensus 83 -----~~d~Vih~aa~~-------~~~~~~~~~~~~nv~~t~~ll~a----~~~~~v~r~V~~SS~~vy~~~~~~~~~~~ 146 (485)
.+|++|++||.. .+.++-+.++++|+.+.....++ +.+..-.++|-++|...+.
T Consensus 109 k~e~G~V~ILVNNAGI~~~~~ll~~~d~ei~k~~~vN~~~~f~t~kaFLP~M~~~~~GHIV~IaS~aG~~---------- 178 (300)
T KOG1201|consen 109 KKEVGDVDILVNNAGIVTGKKLLDCSDEEIQKTFDVNTIAHFWTTKAFLPKMLENNNGHIVTIASVAGLF---------- 178 (300)
T ss_pred HHhcCCceEEEeccccccCCCccCCCHHHHHHHHHHhhHHHHHHHHHHhHHHHhcCCceEEEehhhhccc----------
Confidence 389999999932 23345567899999997765555 5555667999999976653
Q ss_pred CCCCCCCCCCchHHHHHHHHHHHHHHHh------CCCCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCce
Q 047227 147 EALPYPPKHNDFYSATKAEGEALVIKAN------GTNGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNV 220 (485)
Q Consensus 147 e~~~~~~~~~~~Y~~sK~~~E~~~~~~~------~~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~ 220 (485)
+......|..||.++.-..+.+. +..|++++.+.|+.+= . .++ ++.. .-...
T Consensus 179 -----g~~gl~~YcaSK~a~vGfhesL~~EL~~~~~~~IktTlv~P~~i~-T-------gmf----~~~~-----~~~~l 236 (300)
T KOG1201|consen 179 -----GPAGLADYCASKFAAVGFHESLSMELRALGKDGIKTTLVCPYFIN-T-------GMF----DGAT-----PFPTL 236 (300)
T ss_pred -----CCccchhhhhhHHHHHHHHHHHHHHHHhcCCCCeeEEEEeeeecc-c-------ccc----CCCC-----CCccc
Confidence 23456789999999877665543 3457999999998763 1 111 1111 11245
Q ss_pred eecccHHHHHHHHHHHHH
Q 047227 221 YDFTYVANVAHAHICAER 238 (485)
Q Consensus 221 ~~~i~v~D~a~a~~~~~~ 238 (485)
.+.+..+.+|+.++.++.
T Consensus 237 ~P~L~p~~va~~Iv~ai~ 254 (300)
T KOG1201|consen 237 APLLEPEYVAKRIVEAIL 254 (300)
T ss_pred cCCCCHHHHHHHHHHHHH
Confidence 788899999999998876
|
|
| >KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.6e-10 Score=110.54 Aligned_cols=228 Identities=19% Similarity=0.158 Sum_probs=148.5
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc
Q 047227 3 GEENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ 82 (485)
Q Consensus 3 ~~~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~ 82 (485)
....+|.+|||||+.-||+++++.|.+.| .+|.+.+|........... +.......+++..+.+|+++.++..++++
T Consensus 4 ~~l~gkvalVTG~s~GIG~aia~~la~~G-a~v~i~~r~~~~~~~~~~~--~~~~~~~~~~~~~~~~Dv~~~~~~~~l~~ 80 (270)
T KOG0725|consen 4 GRLAGKVALVTGGSSGIGKAIALLLAKAG-AKVVITGRSEERLEETAQE--LGGLGYTGGKVLAIVCDVSKEVDVEKLVE 80 (270)
T ss_pred ccCCCcEEEEECCCChHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHH--HHhcCCCCCeeEEEECcCCCHHHHHHHHH
Confidence 35678999999999999999999999999 6999999876532111111 11111124568899999998876665542
Q ss_pred --------CCCEEEEcCCCC--------CCCCchhhhHHHHHHH-HHHHHHHHHhc----CCCEEEEecCccccccCCCC
Q 047227 83 --------GAEVVFHMAAPN--------SSINNHKLHHSVNVEG-TKNVIDACAEL----KVKRLIYTSSPSVVFDGVHG 141 (485)
Q Consensus 83 --------~~d~Vih~aa~~--------~~~~~~~~~~~~nv~~-t~~ll~a~~~~----~v~r~V~~SS~~vy~~~~~~ 141 (485)
+.|++|++||.. .+.+.++..+++|+.| ...+..++... +-..++++||...+...
T Consensus 81 ~~~~~~~GkidiLvnnag~~~~~~~~~~~s~e~~d~~~~~Nl~G~~~~~~~~a~~~~~~~~gg~I~~~ss~~~~~~~--- 157 (270)
T KOG0725|consen 81 FAVEKFFGKIDILVNNAGALGLTGSILDLSEEVFDKIMATNLRGSAFCLKQAARPMLKKSKGGSIVNISSVAGVGPG--- 157 (270)
T ss_pred HHHHHhCCCCCEEEEcCCcCCCCCChhhCCHHHHHHHHhhhchhHHHHHHHHHHHHHHhcCCceEEEEeccccccCC---
Confidence 389999999922 2345677899999995 66665555543 45579999987654210
Q ss_pred cCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhC---CCCceEEEEecCCcccCCCC-CCh----HHHHHHHHcCCCeEE
Q 047227 142 IINGNEALPYPPKHNDFYSATKAEGEALVIKANG---TNGLLTCCIRPSSIFGPGDR-LLV----PSLVAAARAGKSKFI 213 (485)
Q Consensus 142 ~~~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~---~~g~~~~ilRp~~v~Gp~~~-~~~----~~~~~~~~~g~~~~~ 213 (485)
..+...|+.+|...+++.+.++. ++|+++.++-||.+..+-.. ... ..+..... .+.
T Consensus 158 -----------~~~~~~Y~~sK~al~~ltr~lA~El~~~gIRvN~v~PG~i~T~~~~~~~~~~~~~~~~~~~~-~~~--- 222 (270)
T KOG0725|consen 158 -----------PGSGVAYGVSKAALLQLTRSLAKELAKHGIRVNSVSPGLVKTSLRAAGLDDGEMEEFKEATD-SKG--- 222 (270)
T ss_pred -----------CCCcccchhHHHHHHHHHHHHHHHHhhcCcEEEEeecCcEeCCccccccccchhhHHhhhhc-ccc---
Confidence 11126899999999999988764 36899999999998877411 111 11211100 011
Q ss_pred ecCCCceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCC
Q 047227 214 IGDGNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNM 260 (485)
Q Consensus 214 ~g~g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~ 260 (485)
....-.+.-.+|+|.++..+.....+ -..|+...+.++
T Consensus 223 ---~~p~gr~g~~~eva~~~~fla~~~as------yitG~~i~vdgG 260 (270)
T KOG0725|consen 223 ---AVPLGRVGTPEEVAEAAAFLASDDAS------YITGQTIIVDGG 260 (270)
T ss_pred ---ccccCCccCHHHHHHhHHhhcCcccc------cccCCEEEEeCC
Confidence 11122356689999998877442111 245666655554
|
|
| >PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.3e-10 Score=105.08 Aligned_cols=161 Identities=22% Similarity=0.209 Sum_probs=114.5
Q ss_pred EEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhh-cCCCeEEEEecCCCHHHHHHHhcC----
Q 047227 9 LCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEAL-RSGRAHYVSFDLRHKAQVLQALQG---- 83 (485)
Q Consensus 9 ~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~~---- 83 (485)
++|||||+|-+|..++++|.++|..+|.++.|......... ..+...- ...++.++.+|++|++++.++++.
T Consensus 2 tylitGG~gglg~~la~~La~~~~~~~il~~r~~~~~~~~~---~~i~~l~~~g~~v~~~~~Dv~d~~~v~~~~~~~~~~ 78 (181)
T PF08659_consen 2 TYLITGGLGGLGQSLARWLAERGARRLILLGRSGAPSAEAE---AAIRELESAGARVEYVQCDVTDPEAVAAALAQLRQR 78 (181)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTT-SEEEEEESSGGGSTTHH---HHHHHHHHTT-EEEEEE--TTSHHHHHHHHHTSHTT
T ss_pred EEEEECCccHHHHHHHHHHHHcCCCEEEEeccCCCccHHHH---HHHHHHHhCCCceeeeccCccCHHHHHHHHHHHHhc
Confidence 58999999999999999999999778999988842111111 1122221 245789999999999999999853
Q ss_pred ---CCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCccccccCCCCcCCCCCCCCCCC
Q 047227 84 ---AEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVVFDGVHGIINGNEALPYPP 153 (485)
Q Consensus 84 ---~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy~~~~~~~~~~~e~~~~~~ 153 (485)
.+.|||+|+... +.++....+..-+.|+.+|.++.....++.||.+||.+.... .
T Consensus 79 ~~~i~gVih~ag~~~~~~~~~~t~~~~~~~~~~Kv~g~~~L~~~~~~~~l~~~i~~SSis~~~G---------------~ 143 (181)
T PF08659_consen 79 FGPIDGVIHAAGVLADAPIQDQTPDEFDAVLAPKVRGLWNLHEALENRPLDFFILFSSISSLLG---------------G 143 (181)
T ss_dssp SS-EEEEEE-------B-GCC--HHHHHHHHHHHHHHHHHHHHHHTTTTTSEEEEEEEHHHHTT----------------
T ss_pred cCCcceeeeeeeeecccccccCCHHHHHHHHhhhhhHHHHHHHHhhcCCCCeEEEECChhHhcc---------------C
Confidence 578999999321 223456678888999999999999988999999999876431 2
Q ss_pred CCCchHHHHHHHHHHHHHHHhCCCCceEEEEecCC
Q 047227 154 KHNDFYSATKAEGEALVIKANGTNGLLTCCIRPSS 188 (485)
Q Consensus 154 ~~~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~ 188 (485)
.....|+..-...+.+.+.... .|.+++++.-+.
T Consensus 144 ~gq~~YaaAN~~lda~a~~~~~-~g~~~~sI~wg~ 177 (181)
T PF08659_consen 144 PGQSAYAAANAFLDALARQRRS-RGLPAVSINWGA 177 (181)
T ss_dssp TTBHHHHHHHHHHHHHHHHHHH-TTSEEEEEEE-E
T ss_pred cchHhHHHHHHHHHHHHHHHHh-CCCCEEEEEccc
Confidence 4567899999999988877654 588888887553
|
It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B .... |
| >PLN02730 enoyl-[acyl-carrier-protein] reductase | Back alignment and domain information |
|---|
Probab=99.25 E-value=8.2e-10 Score=107.65 Aligned_cols=225 Identities=10% Similarity=-0.023 Sum_probs=136.4
Q ss_pred CCCCCEEEEEcC--CCchHHHHHHHHHhcCCceEEEeecCCccccC----Ccc-chhhhhhhh---cCCCeEEEEecC--
Q 047227 4 EENERLCVVTGG--RGFAARHLVEMLIRYDMFSVRIADLSDSIALE----PHE-EQGILGEAL---RSGRAHYVSFDL-- 71 (485)
Q Consensus 4 ~~~~~~iLVtGg--tG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~----~~~-~~~~~~~~~---~~~~v~~~~~Dl-- 71 (485)
..++|++||||| +.-||.++++.|.+.| .+|.+ .|....... ... ......... .......+.+|+
T Consensus 6 ~l~gk~alITGa~~s~GIG~a~A~~la~~G-a~Vv~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~ 83 (303)
T PLN02730 6 DLRGKRAFIAGVADDNGYGWAIAKALAAAG-AEILV-GTWVPALNIFETSLRRGKFDESRKLPDGSLMEITKVYPLDAVF 83 (303)
T ss_pred CCCCCEEEEeCCCCCCcHHHHHHHHHHHCC-CEEEE-EeCcchhhHHHHhhhccccchhhhcccccccCcCeeeecceec
Confidence 356899999999 7999999999999999 58877 332110000 000 000000000 011245677888
Q ss_pred CC------------------HHHHHHHhc-------CCCEEEEcCCCC---------CCCCchhhhHHHHHHHHHHHHHH
Q 047227 72 RH------------------KAQVLQALQ-------GAEVVFHMAAPN---------SSINNHKLHHSVNVEGTKNVIDA 117 (485)
Q Consensus 72 ~d------------------~~~l~~~~~-------~~d~Vih~aa~~---------~~~~~~~~~~~~nv~~t~~ll~a 117 (485)
.+ ++++.++++ +.|++||+||.. .+.+++...+++|+.++..+.++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~G~iDiLVnNAG~~~~~~~~~~~~~~e~~~~~~~vN~~~~~~l~~~ 163 (303)
T PLN02730 84 DTPEDVPEDVKTNKRYAGSSNWTVQEVAESVKADFGSIDILVHSLANGPEVTKPLLETSRKGYLAAISASSYSFVSLLQH 163 (303)
T ss_pred CccccCchhhhcccccccCCHHHHHHHHHHHHHHcCCCCEEEECCCccccCCCChhhCCHHHHHHHHHHHhHHHHHHHHH
Confidence 22 224554443 389999999621 12346678899999999888777
Q ss_pred HHhc--CCCEEEEecCccccccCCCCcCCCCCCCCCCCCCC-chHHHHHHHHHHHHHHHhCC----CCceEEEEecCCcc
Q 047227 118 CAEL--KVKRLIYTSSPSVVFDGVHGIINGNEALPYPPKHN-DFYSATKAEGEALVIKANGT----NGLLTCCIRPSSIF 190 (485)
Q Consensus 118 ~~~~--~v~r~V~~SS~~vy~~~~~~~~~~~e~~~~~~~~~-~~Y~~sK~~~E~~~~~~~~~----~g~~~~ilRp~~v~ 190 (485)
+... .-.++|++||..... +.... ..|+.+|+..+.+.+.++.+ .|+++.++-||.+-
T Consensus 164 ~~p~m~~~G~II~isS~a~~~---------------~~p~~~~~Y~asKaAl~~l~~~la~El~~~~gIrVn~V~PG~v~ 228 (303)
T PLN02730 164 FGPIMNPGGASISLTYIASER---------------IIPGYGGGMSSAKAALESDTRVLAFEAGRKYKIRVNTISAGPLG 228 (303)
T ss_pred HHHHHhcCCEEEEEechhhcC---------------CCCCCchhhHHHHHHHHHHHHHHHHHhCcCCCeEEEEEeeCCcc
Confidence 6543 115899999865431 01112 36999999999998887643 57999999999886
Q ss_pred cCCCCCC--hHHHHHHHHcCCCeEEecCCCceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCC
Q 047227 191 GPGDRLL--VPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNM 260 (485)
Q Consensus 191 Gp~~~~~--~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~ 260 (485)
-+-.... .+.......... ....+...+|++.+++.++.... ....|+.+.+.++
T Consensus 229 T~~~~~~~~~~~~~~~~~~~~---------pl~r~~~peevA~~~~fLaS~~a------~~itG~~l~vdGG 285 (303)
T PLN02730 229 SRAAKAIGFIDDMIEYSYANA---------PLQKELTADEVGNAAAFLASPLA------SAITGATIYVDNG 285 (303)
T ss_pred CchhhcccccHHHHHHHHhcC---------CCCCCcCHHHHHHHHHHHhCccc------cCccCCEEEECCC
Confidence 5532210 111111111111 11234678999999998865221 2256777777654
|
|
| >KOG1208 consensus Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.7e-10 Score=112.20 Aligned_cols=183 Identities=15% Similarity=0.102 Sum_probs=127.1
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc--
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ-- 82 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 82 (485)
..++.++|||++.-||.++++.|..+| .+|++..|+........++ +........+.++.+|+.|.+++.+..+
T Consensus 33 ~~~~~~vVTGansGIG~eta~~La~~G-a~Vv~~~R~~~~~~~~~~~---i~~~~~~~~i~~~~lDLssl~SV~~fa~~~ 108 (314)
T KOG1208|consen 33 LSGKVALVTGATSGIGFETARELALRG-AHVVLACRNEERGEEAKEQ---IQKGKANQKIRVIQLDLSSLKSVRKFAEEF 108 (314)
T ss_pred CCCcEEEEECCCCchHHHHHHHHHhCC-CEEEEEeCCHHHHHHHHHH---HHhcCCCCceEEEECCCCCHHHHHHHHHHH
Confidence 456899999999999999999999999 7999999986432221111 2222335678889999999988877653
Q ss_pred -----CCCEEEEcCCCCC-----CCCchhhhHHHHHHHHHHHH----HHHHhcCCCEEEEecCccccccC-CCCcCCCCC
Q 047227 83 -----GAEVVFHMAAPNS-----SINNHKLHHSVNVEGTKNVI----DACAELKVKRLIYTSSPSVVFDG-VHGIINGNE 147 (485)
Q Consensus 83 -----~~d~Vih~aa~~~-----~~~~~~~~~~~nv~~t~~ll----~a~~~~~v~r~V~~SS~~vy~~~-~~~~~~~~e 147 (485)
..|+.|++||... ..+..+.++.+|..|+..+. ..++.....|+|++||..- +.. .-.....+.
T Consensus 109 ~~~~~~ldvLInNAGV~~~~~~~t~DG~E~~~~tN~lg~flLt~lLlp~lk~s~~~RIV~vsS~~~-~~~~~~~~l~~~~ 187 (314)
T KOG1208|consen 109 KKKEGPLDVLINNAGVMAPPFSLTKDGLELTFATNYLGHFLLTELLLPLLKRSAPSRIVNVSSILG-GGKIDLKDLSGEK 187 (314)
T ss_pred HhcCCCccEEEeCcccccCCcccCccchhheehhhhHHHHHHHHHHHHHHhhCCCCCEEEEcCccc-cCccchhhccchh
Confidence 3799999999321 33467899999999976664 5566565579999999543 110 111111111
Q ss_pred CCCCCCCCCchHHHHHHHHHHHHHHHhCCC--CceEEEEecCCcccCCC
Q 047227 148 ALPYPPKHNDFYSATKAEGEALVIKANGTN--GLLTCCIRPSSIFGPGD 194 (485)
Q Consensus 148 ~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~--g~~~~ilRp~~v~Gp~~ 194 (485)
... ....-.|+.||.+......++.++. |+.+..+.||.+..++-
T Consensus 188 ~~~--~~~~~~Y~~SKla~~l~~~eL~k~l~~~V~~~~~hPG~v~t~~l 234 (314)
T KOG1208|consen 188 AKL--YSSDAAYALSKLANVLLANELAKRLKKGVTTYSVHPGVVKTTGL 234 (314)
T ss_pred ccC--ccchhHHHHhHHHHHHHHHHHHHHhhcCceEEEECCCcccccce
Confidence 000 1122259999999988888777654 69999999999988743
|
|
| >KOG1200 consensus Mitochondrial/plastidial beta-ketoacyl-ACP reductase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.8e-10 Score=100.25 Aligned_cols=216 Identities=19% Similarity=0.167 Sum_probs=151.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc----
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ---- 82 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~---- 82 (485)
.+.++||||+.-||++++..|.+.| ++|.+.++........ ..+.....+-..+.+|+.+++++...++
T Consensus 14 sk~~~vtGg~sGIGrAia~~la~~G-arv~v~dl~~~~A~at------a~~L~g~~~h~aF~~DVS~a~~v~~~l~e~~k 86 (256)
T KOG1200|consen 14 SKVAAVTGGSSGIGRAIAQLLAKKG-ARVAVADLDSAAAEAT------AGDLGGYGDHSAFSCDVSKAHDVQNTLEEMEK 86 (256)
T ss_pred cceeEEecCCchHHHHHHHHHHhcC-cEEEEeecchhhHHHH------HhhcCCCCccceeeeccCcHHHHHHHHHHHHH
Confidence 4689999999999999999999999 7999988875422111 1111122456678999999887776554
Q ss_pred ---CCCEEEEcCCC-------CCCCCchhhhHHHHHHHHHHHHHHHHhc----C--CCEEEEecCccccccCCCCcCCCC
Q 047227 83 ---GAEVVFHMAAP-------NSSINNHKLHHSVNVEGTKNVIDACAEL----K--VKRLIYTSSPSVVFDGVHGIINGN 146 (485)
Q Consensus 83 ---~~d~Vih~aa~-------~~~~~~~~~~~~~nv~~t~~ll~a~~~~----~--v~r~V~~SS~~vy~~~~~~~~~~~ 146 (485)
.++++++|||. ....+++...+.+|..|+..+-+++.+. + .-++|.+||. .|- -
T Consensus 87 ~~g~psvlVncAGItrD~~Llrmkq~qwd~vi~vNL~gvfl~tqaa~r~~~~~~~~~~sIiNvsSI--VGk--i------ 156 (256)
T KOG1200|consen 87 SLGTPSVLVNCAGITRDGLLLRMKQEQWDSVIAVNLTGVFLVTQAAVRAMVMNQQQGLSIINVSSI--VGK--I------ 156 (256)
T ss_pred hcCCCcEEEEcCccccccceeeccHHHHHHHHHhhchhhHHHHHHHHHHHHHhcCCCceEEeehhh--hcc--c------
Confidence 38999999992 2356688999999999998887776654 2 2389999984 321 0
Q ss_pred CCCCCCCCCCchHHHHHHHHH----HHHHHHhCCCCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCceee
Q 047227 147 EALPYPPKHNDFYSATKAEGE----ALVIKANGTNGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYD 222 (485)
Q Consensus 147 e~~~~~~~~~~~Y~~sK~~~E----~~~~~~~~~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~ 222 (485)
.....+.|+.+|...- ...++.+ +.++++..+-||.|--|-....-+.+.+.+...-|.--.|+
T Consensus 157 -----GN~GQtnYAAsK~GvIgftktaArEla-~knIrvN~VlPGFI~tpMT~~mp~~v~~ki~~~iPmgr~G~------ 224 (256)
T KOG1200|consen 157 -----GNFGQTNYAASKGGVIGFTKTAARELA-RKNIRVNVVLPGFIATPMTEAMPPKVLDKILGMIPMGRLGE------ 224 (256)
T ss_pred -----ccccchhhhhhcCceeeeeHHHHHHHh-hcCceEeEeccccccChhhhhcCHHHHHHHHccCCccccCC------
Confidence 1234556776665332 2223333 35899999999999888766666788888888876655554
Q ss_pred cccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCC
Q 047227 223 FTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNM 260 (485)
Q Consensus 223 ~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~ 260 (485)
.+|+|..+..+.....+- ..|..+.++++
T Consensus 225 ---~EevA~~V~fLAS~~ssY------iTG~t~evtGG 253 (256)
T KOG1200|consen 225 ---AEEVANLVLFLASDASSY------ITGTTLEVTGG 253 (256)
T ss_pred ---HHHHHHHHHHHhcccccc------ccceeEEEecc
Confidence 789999888765322222 56777877765
|
|
| >KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.18 E-value=2e-10 Score=101.30 Aligned_cols=161 Identities=16% Similarity=0.134 Sum_probs=117.9
Q ss_pred CCCCCEEEEEcCC-CchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc
Q 047227 4 EENERLCVVTGGR-GFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ 82 (485)
Q Consensus 4 ~~~~~~iLVtGgt-G~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~ 82 (485)
....++|||||++ |-||.++++.+.+.| +.|....|..+...+ .....++.....|+.+++++.+...
T Consensus 4 ~~~~k~VlItgcs~GGIG~ala~ef~~~G-~~V~AtaR~~e~M~~----------L~~~~gl~~~kLDV~~~~~V~~v~~ 72 (289)
T KOG1209|consen 4 QSQPKKVLITGCSSGGIGYALAKEFARNG-YLVYATARRLEPMAQ----------LAIQFGLKPYKLDVSKPEEVVTVSG 72 (289)
T ss_pred ccCCCeEEEeecCCcchhHHHHHHHHhCC-eEEEEEccccchHhh----------HHHhhCCeeEEeccCChHHHHHHHH
Confidence 3445899999988 999999999999999 799998887553222 2224578889999999998876642
Q ss_pred --------CCCEEEEcCCC-------CCCCCchhhhHHHHHHHHHHHHHHHHhc---CCCEEEEecCccccccCCCCcCC
Q 047227 83 --------GAEVVFHMAAP-------NSSINNHKLHHSVNVEGTKNVIDACAEL---KVKRLIYTSSPSVVFDGVHGIIN 144 (485)
Q Consensus 83 --------~~d~Vih~aa~-------~~~~~~~~~~~~~nv~~t~~ll~a~~~~---~v~r~V~~SS~~vy~~~~~~~~~ 144 (485)
+.|+.++.||. +.....-+.++++|+.|..++-++.... ....+|++.|..+|-
T Consensus 73 evr~~~~Gkld~L~NNAG~~C~~Pa~d~~i~ave~~f~vNvfG~irM~~a~~h~likaKGtIVnvgSl~~~v-------- 144 (289)
T KOG1209|consen 73 EVRANPDGKLDLLYNNAGQSCTFPALDATIAAVEQCFKVNVFGHIRMCRALSHFLIKAKGTIVNVGSLAGVV-------- 144 (289)
T ss_pred HHhhCCCCceEEEEcCCCCCcccccccCCHHHHHhhhccceeeeehHHHHHHHHHHHccceEEEecceeEEe--------
Confidence 26999999991 2233456788999999987777765533 134799999988874
Q ss_pred CCCCCCCCCCCCchHHHHHHHHHHHHHHHh---CCCCceEEEEecCCcc
Q 047227 145 GNEALPYPPKHNDFYSATKAEGEALVIKAN---GTNGLLTCCIRPSSIF 190 (485)
Q Consensus 145 ~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~---~~~g~~~~ilRp~~v~ 190 (485)
|....+.|..||++.-.+.+.+. +.+|++++.+-+|.|-
T Consensus 145 -------pfpf~~iYsAsKAAihay~~tLrlEl~PFgv~Vin~itGGv~ 186 (289)
T KOG1209|consen 145 -------PFPFGSIYSASKAAIHAYARTLRLELKPFGVRVINAITGGVA 186 (289)
T ss_pred -------ccchhhhhhHHHHHHHHhhhhcEEeeeccccEEEEeccccee
Confidence 23345689999999888776654 2356666666666543
|
|
| >PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.2e-10 Score=108.52 Aligned_cols=210 Identities=19% Similarity=0.130 Sum_probs=143.9
Q ss_pred cCC--CchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHh--------cC
Q 047227 14 GGR--GFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQAL--------QG 83 (485)
Q Consensus 14 Ggt--G~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~--------~~ 83 (485)
|++ +-||.++++.|+++| ++|.+.+|...... ..+.......+.+.+.+|++|++++.+++ .+
T Consensus 1 g~~~s~GiG~aia~~l~~~G-a~V~~~~~~~~~~~------~~~~~l~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~g~ 73 (241)
T PF13561_consen 1 GAGSSSGIGRAIARALAEEG-ANVILTDRNEEKLA------DALEELAKEYGAEVIQCDLSDEESVEALFDEAVERFGGR 73 (241)
T ss_dssp STSSTSHHHHHHHHHHHHTT-EEEEEEESSHHHHH------HHHHHHHHHTTSEEEESCTTSHHHHHHHHHHHHHHHCSS
T ss_pred CCCCCCChHHHHHHHHHHCC-CEEEEEeCChHHHH------HHHHHHHHHcCCceEeecCcchHHHHHHHHHHHhhcCCC
Confidence 556 999999999999999 69999998865210 01222222234557999999998887774 34
Q ss_pred CCEEEEcCCCCCC-----------CCchhhhHHHHHHHHHHHHHHHHhc--CCCEEEEecCccccccCCCCcCCCCCCCC
Q 047227 84 AEVVFHMAAPNSS-----------INNHKLHHSVNVEGTKNVIDACAEL--KVKRLIYTSSPSVVFDGVHGIINGNEALP 150 (485)
Q Consensus 84 ~d~Vih~aa~~~~-----------~~~~~~~~~~nv~~t~~ll~a~~~~--~v~r~V~~SS~~vy~~~~~~~~~~~e~~~ 150 (485)
.|++||+++.... .+++...+++|+.++..+.+++.+. .-.++|++||.....
T Consensus 74 iD~lV~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsii~iss~~~~~-------------- 139 (241)
T PF13561_consen 74 IDILVNNAGISPPSNVEKPLLDLSEEDWDKTFDINVFSPFLLAQAALPLMKKGGSIINISSIAAQR-------------- 139 (241)
T ss_dssp ESEEEEEEESCTGGGTSSSGGGSHHHHHHHHHHHHTHHHHHHHHHHHHHHHHEEEEEEEEEGGGTS--------------
T ss_pred eEEEEecccccccccCCCChHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccccchhhcc--------------
Confidence 7999999983221 1355678899999999988887543 124799999865431
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHhC---C-CCceEEEEecCCcccCCCCC--ChHHHHHHHHcCCCeEEecCCCceeecc
Q 047227 151 YPPKHNDFYSATKAEGEALVIKANG---T-NGLLTCCIRPSSIFGPGDRL--LVPSLVAAARAGKSKFIIGDGNNVYDFT 224 (485)
Q Consensus 151 ~~~~~~~~Y~~sK~~~E~~~~~~~~---~-~g~~~~ilRp~~v~Gp~~~~--~~~~~~~~~~~g~~~~~~g~g~~~~~~i 224 (485)
+......|+.+|...+.+.+.++. . +|+++.++.||.+..+.... ..+.+.....+..+. ..+.
T Consensus 140 -~~~~~~~y~~sKaal~~l~r~lA~el~~~~gIrVN~V~pG~i~t~~~~~~~~~~~~~~~~~~~~pl---------~r~~ 209 (241)
T PF13561_consen 140 -PMPGYSAYSASKAALEGLTRSLAKELAPKKGIRVNAVSPGPIETPMTERIPGNEEFLEELKKRIPL---------GRLG 209 (241)
T ss_dssp -BSTTTHHHHHHHHHHHHHHHHHHHHHGGHGTEEEEEEEESSBSSHHHHHHHTHHHHHHHHHHHSTT---------SSHB
T ss_pred -cCccchhhHHHHHHHHHHHHHHHHHhccccCeeeeeecccceeccchhccccccchhhhhhhhhcc---------CCCc
Confidence 123445899999999999887653 4 68999999999987553111 123344444433321 2355
Q ss_pred cHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCC
Q 047227 225 YVANVAHAHICAERALASEVTVAEKAAGQAYFVTNM 260 (485)
Q Consensus 225 ~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~ 260 (485)
..+|+|.++..++.... .-..|+...+.+|
T Consensus 210 ~~~evA~~v~fL~s~~a------~~itG~~i~vDGG 239 (241)
T PF13561_consen 210 TPEEVANAVLFLASDAA------SYITGQVIPVDGG 239 (241)
T ss_dssp EHHHHHHHHHHHHSGGG------TTGTSEEEEESTT
T ss_pred CHHHHHHHHHHHhCccc------cCccCCeEEECCC
Confidence 79999999998865322 2377888887665
|
... |
| >PRK06300 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=5.5e-09 Score=101.80 Aligned_cols=229 Identities=11% Similarity=0.062 Sum_probs=134.9
Q ss_pred CCCCCCCCEEEEEcCC--CchHHHHHHHHHhcCCceEEEeecCC-------ccccCCcc-----chhh---hhh----hh
Q 047227 1 MSGEENERLCVVTGGR--GFAARHLVEMLIRYDMFSVRIADLSD-------SIALEPHE-----EQGI---LGE----AL 59 (485)
Q Consensus 1 M~~~~~~~~iLVtGgt--G~iG~~l~~~Ll~~G~~~V~~~~r~~-------~~~~~~~~-----~~~~---~~~----~~ 59 (485)
|+...++|.++|||++ .-||+++++.|.++| ++|.+.++.+ ........ ..+- ... ..
T Consensus 2 ~~~~~~gk~alITGa~~~~GIG~a~A~~la~~G-a~Vvv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 80 (299)
T PRK06300 2 LKIDLTGKIAFIAGIGDDQGYGWGIAKALAEAG-ATILVGTWVPIYKIFSQSLELGKFDASRKLSNGSLLTFAKIYPMDA 80 (299)
T ss_pred CCcCCCCCEEEEeCCCCCCCHHHHHHHHHHHCC-CEEEEEeccchhhhhhhhcccccccccccccccchhhhhhHHHhhh
Confidence 5556788999999995 899999999999999 7888876432 00000000 0000 000 00
Q ss_pred cCCCeEEEEecCCCH--------HHHHHHh-------cCCCEEEEcCCCC----C-----CCCchhhhHHHHHHHHHHHH
Q 047227 60 RSGRAHYVSFDLRHK--------AQVLQAL-------QGAEVVFHMAAPN----S-----SINNHKLHHSVNVEGTKNVI 115 (485)
Q Consensus 60 ~~~~v~~~~~Dl~d~--------~~l~~~~-------~~~d~Vih~aa~~----~-----~~~~~~~~~~~nv~~t~~ll 115 (485)
.....+-+..|+++. +++.+++ .+.|++||+||.. . +.++++..+++|+.++.++.
T Consensus 81 d~~~~~~v~~~i~~~~~~~~~~~~si~~~~~~v~~~~G~lDvLVnNAG~~~~~~~~~~~~~~e~~~~~~~vNl~g~~~l~ 160 (299)
T PRK06300 81 SFDTPEDVPEEIRENKRYKDLSGYTISEVAEQVKKDFGHIDILVHSLANSPEISKPLLETSRKGYLAALSTSSYSFVSLL 160 (299)
T ss_pred hcCCCEEeecccCccccccCCCHHHHHHHHHHHHHHcCCCcEEEECCCcCcccCCChhhCCHHHHHHHHHHHhHHHHHHH
Confidence 011223333444431 1233333 2489999999721 1 22356778899999999998
Q ss_pred HHHHhc--CCCEEEEecCccccccCCCCcCCCCCCCCCCCCCC-chHHHHHHHHHHHHHHHhCC----CCceEEEEecCC
Q 047227 116 DACAEL--KVKRLIYTSSPSVVFDGVHGIINGNEALPYPPKHN-DFYSATKAEGEALVIKANGT----NGLLTCCIRPSS 188 (485)
Q Consensus 116 ~a~~~~--~v~r~V~~SS~~vy~~~~~~~~~~~e~~~~~~~~~-~~Y~~sK~~~E~~~~~~~~~----~g~~~~ilRp~~ 188 (485)
+++... .-.++|.+||..... +.... ..|+.+|...+.+.+.++.+ +|+++..+.||.
T Consensus 161 ~a~~p~m~~~G~ii~iss~~~~~---------------~~p~~~~~Y~asKaAl~~lt~~la~el~~~~gIrVn~V~PG~ 225 (299)
T PRK06300 161 SHFGPIMNPGGSTISLTYLASMR---------------AVPGYGGGMSSAKAALESDTKVLAWEAGRRWGIRVNTISAGP 225 (299)
T ss_pred HHHHHHhhcCCeEEEEeehhhcC---------------cCCCccHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEEEeCC
Confidence 887653 124788888754421 01112 36999999999988876642 489999999998
Q ss_pred cccCCCCCC--hHHHHHHHHcCCCeEEecCCCceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCC
Q 047227 189 IFGPGDRLL--VPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNM 260 (485)
Q Consensus 189 v~Gp~~~~~--~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~ 260 (485)
+--+..... .+..........+ ...+...+|+|.++..++..... ...|+.+.+.++
T Consensus 226 v~T~~~~~~~~~~~~~~~~~~~~p---------~~r~~~peevA~~v~~L~s~~~~------~itG~~i~vdGG 284 (299)
T PRK06300 226 LASRAGKAIGFIERMVDYYQDWAP---------LPEPMEAEQVGAAAAFLVSPLAS------AITGETLYVDHG 284 (299)
T ss_pred ccChhhhcccccHHHHHHHHhcCC---------CCCCcCHHHHHHHHHHHhCcccc------CCCCCEEEECCC
Confidence 865432110 1111111111111 11345689999999887542211 256777777654
|
|
| >COG1028 FabG Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=99.09 E-value=4.8e-09 Score=99.88 Aligned_cols=165 Identities=19% Similarity=0.182 Sum_probs=115.7
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcC--CCeEEEEecCCC-HHHHHHHh
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRS--GRAHYVSFDLRH-KAQVLQAL 81 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~Dl~d-~~~l~~~~ 81 (485)
.++|++|||||++-||..+++.|.++| +.|++..+..... ..+. ........ ..+.+..+|+++ .+++..++
T Consensus 3 ~~~~~ilITGas~GiG~aia~~l~~~G-~~v~~~~~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~Dvs~~~~~v~~~~ 77 (251)
T COG1028 3 LSGKVALVTGASSGIGRAIARALAREG-ARVVVAARRSEEE--AAEA--LAAAIKEAGGGRAAAVAADVSDDEESVEALV 77 (251)
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC-CeEEEEcCCCchh--hHHH--HHHHHHhcCCCcEEEEEecCCCCHHHHHHHH
Confidence 356899999999999999999999999 5777776654321 0000 00000011 357778899998 77766655
Q ss_pred c-------CCCEEEEcCCCCC--------CCCchhhhHHHHHHHHHHHHHHHHhcC-CCEEEEecCccccccCCCCcCCC
Q 047227 82 Q-------GAEVVFHMAAPNS--------SINNHKLHHSVNVEGTKNVIDACAELK-VKRLIYTSSPSVVFDGVHGIING 145 (485)
Q Consensus 82 ~-------~~d~Vih~aa~~~--------~~~~~~~~~~~nv~~t~~ll~a~~~~~-v~r~V~~SS~~vy~~~~~~~~~~ 145 (485)
+ +.|+++|+|+... ..++.+..+++|+.+...+.+++...- .+++|++||.... .
T Consensus 78 ~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~Iv~isS~~~~-~-------- 148 (251)
T COG1028 78 AAAEEEFGRIDILVNNAGIAGPDAPLEELTEEDWDRVIDVNLLGAFLLTRAALPLMKKQRIVNISSVAGL-G-------- 148 (251)
T ss_pred HHHHHHcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHhHHHHHHHHHHHHHhhhhCeEEEECCchhc-C--------
Confidence 3 3899999999422 124667889999999888887444321 1289999996543 1
Q ss_pred CCCCCCCCCC-CchHHHHHHHHHHHHHHHhC---CCCceEEEEecCCcc
Q 047227 146 NEALPYPPKH-NDFYSATKAEGEALVIKANG---TNGLLTCCIRPSSIF 190 (485)
Q Consensus 146 ~e~~~~~~~~-~~~Y~~sK~~~E~~~~~~~~---~~g~~~~ilRp~~v~ 190 (485)
..+ ...|+.||...+.+.+.++. .+|+++..+.||.+-
T Consensus 149 -------~~~~~~~Y~~sK~al~~~~~~l~~e~~~~gi~v~~v~PG~~~ 190 (251)
T COG1028 149 -------GPPGQAAYAASKAALIGLTKALALELAPRGIRVNAVAPGYID 190 (251)
T ss_pred -------CCCCcchHHHHHHHHHHHHHHHHHHHhhhCcEEEEEEeccCC
Confidence 122 47899999999998887763 368999999999544
|
|
| >TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.8e-09 Score=129.23 Aligned_cols=172 Identities=17% Similarity=0.122 Sum_probs=125.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCC-------------------------------------
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEP------------------------------------- 48 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~------------------------------------- 48 (485)
+++++|||||++-||..++++|.++|..+|.+++|+......+
T Consensus 1996 ~g~vvLVTGGarGIG~aiA~~LA~~~ga~viL~gRs~~~~~~p~~a~~~~~~~lk~~~~~~l~~~g~~~~P~~i~~~~~~ 2075 (2582)
T TIGR02813 1996 SDDVFLVTGGAKGVTFECALELAKQCQAHFILAGRSSFDDNEPSWAQGKDENELKKAAIQHLQASGEKPTPKKVDALVRP 2075 (2582)
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHhcCCEEEEEeCCcccccCchhhhccchHHHHHhhhhhhhhcccccccchhhhcccc
Confidence 4679999999999999999999998436899998873100000
Q ss_pred ---ccc-hhhhhhh-hcCCCeEEEEecCCCHHHHHHHhc------CCCEEEEcCCCC-------CCCCchhhhHHHHHHH
Q 047227 49 ---HEE-QGILGEA-LRSGRAHYVSFDLRHKAQVLQALQ------GAEVVFHMAAPN-------SSINNHKLHHSVNVEG 110 (485)
Q Consensus 49 ---~~~-~~~~~~~-~~~~~v~~~~~Dl~d~~~l~~~~~------~~d~Vih~aa~~-------~~~~~~~~~~~~nv~~ 110 (485)
..+ ...+... -...++.++.+|++|.+++.++++ +.|.|||+||.. .+.+++...+++|+.|
T Consensus 2076 ~~~~~ei~~~la~l~~~G~~v~y~~~DVtD~~av~~av~~v~~~g~IDgVVhnAGv~~~~~i~~~t~e~f~~v~~~nv~G 2155 (2582)
T TIGR02813 2076 VLSSLEIAQALAAFKAAGASAEYASADVTNSVSVAATVQPLNKTLQITGIIHGAGVLADKHIQDKTLEEFNAVYGTKVDG 2155 (2582)
T ss_pred cchhHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHhCCCcEEEECCccCCCCCcccCCHHHHHHHHHHHHHH
Confidence 000 0001110 013468899999999998887764 389999999932 1334677789999999
Q ss_pred HHHHHHHHHhcCCCEEEEecCccccccCCCCcCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhCCC-CceEEEEecCCc
Q 047227 111 TKNVIDACAELKVKRLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANGTN-GLLTCCIRPSSI 189 (485)
Q Consensus 111 t~~ll~a~~~~~v~r~V~~SS~~vy~~~~~~~~~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~-g~~~~ilRp~~v 189 (485)
+.++++++.....+++|++||...+.. ......|+.+|...+.+.+.+..+. ++++.++.||.+
T Consensus 2156 ~~~Ll~al~~~~~~~IV~~SSvag~~G---------------~~gqs~YaaAkaaL~~la~~la~~~~~irV~sI~wG~w 2220 (2582)
T TIGR02813 2156 LLSLLAALNAENIKLLALFSSAAGFYG---------------NTGQSDYAMSNDILNKAALQLKALNPSAKVMSFNWGPW 2220 (2582)
T ss_pred HHHHHHHHHHhCCCeEEEEechhhcCC---------------CCCcHHHHHHHHHHHHHHHHHHHHcCCcEEEEEECCee
Confidence 999999998877778999999766431 2345679999999888887776544 588999998876
Q ss_pred ccC
Q 047227 190 FGP 192 (485)
Q Consensus 190 ~Gp 192 (485)
-|+
T Consensus 2221 dtg 2223 (2582)
T TIGR02813 2221 DGG 2223 (2582)
T ss_pred cCC
Confidence 554
|
Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD. |
| >KOG1210 consensus Predicted 3-ketosphinganine reductase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.7e-09 Score=101.66 Aligned_cols=205 Identities=21% Similarity=0.156 Sum_probs=137.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcC--
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQG-- 83 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~-- 83 (485)
+..+|+||||+--+|-.++..+..+| ..|+++.|....-.....+ +........+.+..+|+.|.+++..++++
T Consensus 32 ~~~hi~itggS~glgl~la~e~~~~g-a~Vti~ar~~~kl~~a~~~---l~l~~~~~~v~~~S~d~~~Y~~v~~~~~~l~ 107 (331)
T KOG1210|consen 32 PRRHILITGGSSGLGLALALECKREG-ADVTITARSGKKLLEAKAE---LELLTQVEDVSYKSVDVIDYDSVSKVIEELR 107 (331)
T ss_pred ccceEEEecCcchhhHHHHHHHHHcc-CceEEEeccHHHHHHHHhh---hhhhhccceeeEeccccccHHHHHHHHhhhh
Confidence 34699999999999999999999999 5999998875532221111 22222233477999999999998888753
Q ss_pred -----CCEEEEcCCC-------CCCCCchhhhHHHHHHHHHHHHHHHHhc----C-CCEEEEecCccccccCCCCcCCCC
Q 047227 84 -----AEVVFHMAAP-------NSSINNHKLHHSVNVEGTKNVIDACAEL----K-VKRLIYTSSPSVVFDGVHGIINGN 146 (485)
Q Consensus 84 -----~d~Vih~aa~-------~~~~~~~~~~~~~nv~~t~~ll~a~~~~----~-v~r~V~~SS~~vy~~~~~~~~~~~ 146 (485)
+|.+|+|||. ..+....+...++|..|+.|++.++... . ..+++.+||...-.
T Consensus 108 ~~~~~~d~l~~cAG~~v~g~f~~~s~~~v~~~m~vNylgt~~v~~~~~~~mk~~~~~g~I~~vsS~~a~~---------- 177 (331)
T KOG1210|consen 108 DLEGPIDNLFCCAGVAVPGLFEDLSPEVVEKLMDVNYLGTVNVAKAAARAMKKREHLGRIILVSSQLAML---------- 177 (331)
T ss_pred hccCCcceEEEecCcccccccccCCHHHHHHHHHhhhhhhHHHHHHHHHHhhccccCcEEEEehhhhhhc----------
Confidence 7999999992 1233355678999999999998876543 1 33888888865532
Q ss_pred CCCCCCCCCCchHHHHHHHHHHHHHHHh---CCCCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCceeec
Q 047227 147 EALPYPPKHNDFYSATKAEGEALVIKAN---GTNGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDF 223 (485)
Q Consensus 147 e~~~~~~~~~~~Y~~sK~~~E~~~~~~~---~~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~ 223 (485)
+....+.|+.+|...-.+..... .++++.++..-|+.+-.|+-.. + ...+-....+... .-+.
T Consensus 178 -----~i~GysaYs~sK~alrgLa~~l~qE~i~~~v~Vt~~~P~~~~tpGfE~--E----n~tkP~~t~ii~g---~ss~ 243 (331)
T KOG1210|consen 178 -----GIYGYSAYSPSKFALRGLAEALRQELIKYGVHVTLYYPPDTLTPGFER--E----NKTKPEETKIIEG---GSSV 243 (331)
T ss_pred -----CcccccccccHHHHHHHHHHHHHHHHhhcceEEEEEcCCCCCCCcccc--c----cccCchheeeecC---CCCC
Confidence 24556777777776655544433 2468999999999988886321 0 0000111111111 1244
Q ss_pred ccHHHHHHHHHHHHH
Q 047227 224 TYVANVAHAHICAER 238 (485)
Q Consensus 224 i~v~D~a~a~~~~~~ 238 (485)
+-.+++|.+++.=+.
T Consensus 244 ~~~e~~a~~~~~~~~ 258 (331)
T KOG1210|consen 244 IKCEEMAKAIVKGMK 258 (331)
T ss_pred cCHHHHHHHHHhHHh
Confidence 788999999886554
|
|
| >KOG4169 consensus 15-hydroxyprostaglandin dehydrogenase and related dehydrogenases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.4e-09 Score=97.39 Aligned_cols=217 Identities=17% Similarity=0.104 Sum_probs=143.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcC--
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQG-- 83 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~-- 83 (485)
+++++++|||.|-||..+++.|+.+|-..+.+.+|-.. .+....+........+-++++|++++.+++++++.
T Consensus 4 tGKna~vtggagGIGl~~sk~Ll~kgik~~~i~~~~En-----~~a~akL~ai~p~~~v~F~~~DVt~~~~~~~~f~ki~ 78 (261)
T KOG4169|consen 4 TGKNALVTGGAGGIGLATSKALLEKGIKVLVIDDSEEN-----PEAIAKLQAINPSVSVIFIKCDVTNRGDLEAAFDKIL 78 (261)
T ss_pred cCceEEEecCCchhhHHHHHHHHHcCchheeehhhhhC-----HHHHHHHhccCCCceEEEEEeccccHHHHHHHHHHHH
Confidence 47899999999999999999999999544444444322 11122244445567899999999999988888863
Q ss_pred -----CCEEEEcCCCCCCCCchhhhHHHHHHH----HHHHHHHHHhcC---CCEEEEecCccccccCCCCcCCCCCCCCC
Q 047227 84 -----AEVVFHMAAPNSSINNHKLHHSVNVEG----TKNVIDACAELK---VKRLIYTSSPSVVFDGVHGIINGNEALPY 151 (485)
Q Consensus 84 -----~d~Vih~aa~~~~~~~~~~~~~~nv~~----t~~ll~a~~~~~---v~r~V~~SS~~vy~~~~~~~~~~~e~~~~ 151 (485)
.|++|+.||... ..+++.++.+|..| |...+.++.+.. -.-+|..|| |+|-.
T Consensus 79 ~~fg~iDIlINgAGi~~-dkd~e~Ti~vNLtgvin~T~~alpyMdk~~gG~GGiIvNmsS--v~GL~------------- 142 (261)
T KOG4169|consen 79 ATFGTIDILINGAGILD-DKDWERTINVNLTGVINGTQLALPYMDKKQGGKGGIIVNMSS--VAGLD------------- 142 (261)
T ss_pred HHhCceEEEEccccccc-chhHHHhhccchhhhhhhhhhhhhhhhhhcCCCCcEEEEecc--ccccC-------------
Confidence 799999999665 45688889999665 555677766542 346889997 55411
Q ss_pred CCCCCchHHHHHHHHHHHHHH-----HhCCCCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCC----Cceee
Q 047227 152 PPKHNDFYSATKAEGEALVIK-----ANGTNGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDG----NNVYD 222 (485)
Q Consensus 152 ~~~~~~~Y~~sK~~~E~~~~~-----~~~~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g----~~~~~ 222 (485)
|..-...|+.||+..-.+-+. +..+.|+++..++|+.+- ..++..+.+.+...-+++. -...+
T Consensus 143 P~p~~pVY~AsKaGVvgFTRSla~~ayy~~sGV~~~avCPG~t~--------t~l~~~~~~~~~~~e~~~~~~~~l~~~~ 214 (261)
T KOG4169|consen 143 PMPVFPVYAASKAGVVGFTRSLADLAYYQRSGVRFNAVCPGFTR--------TDLAENIDASGGYLEYSDSIKEALERAP 214 (261)
T ss_pred ccccchhhhhcccceeeeehhhhhhhhHhhcCEEEEEECCCcch--------HHHHHHHHhcCCcccccHHHHHHHHHcc
Confidence 233455799999876555444 334579999999999753 2233333321111111000 00122
Q ss_pred cccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCC
Q 047227 223 FTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNM 260 (485)
Q Consensus 223 ~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~ 260 (485)
-....+++..++.+++. ...|.+|-++.+
T Consensus 215 ~q~~~~~a~~~v~aiE~---------~~NGaiw~v~~g 243 (261)
T KOG4169|consen 215 KQSPACCAINIVNAIEY---------PKNGAIWKVDSG 243 (261)
T ss_pred cCCHHHHHHHHHHHHhh---------ccCCcEEEEecC
Confidence 34578889999988884 145778888775
|
|
| >COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.6e-09 Score=94.16 Aligned_cols=162 Identities=13% Similarity=0.117 Sum_probs=116.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc---
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ--- 82 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 82 (485)
++.+||||||+.-||..+++.+.+.| .+|++..|....- .......+.+....+|+.|.+..+++++
T Consensus 4 tgnTiLITGG~sGIGl~lak~f~elg-N~VIi~gR~e~~L---------~e~~~~~p~~~t~v~Dv~d~~~~~~lvewLk 73 (245)
T COG3967 4 TGNTILITGGASGIGLALAKRFLELG-NTVIICGRNEERL---------AEAKAENPEIHTEVCDVADRDSRRELVEWLK 73 (245)
T ss_pred cCcEEEEeCCcchhhHHHHHHHHHhC-CEEEEecCcHHHH---------HHHHhcCcchheeeecccchhhHHHHHHHHH
Confidence 46799999999999999999999999 5999988875421 1122235778889999999887666553
Q ss_pred ----CCCEEEEcCCCCC---------CCCchhhhHHHHHHHHHHHHHHHHhc----CCCEEEEecCccccccCCCCcCCC
Q 047227 83 ----GAEVVFHMAAPNS---------SINNHKLHHSVNVEGTKNVIDACAEL----KVKRLIYTSSPSVVFDGVHGIING 145 (485)
Q Consensus 83 ----~~d~Vih~aa~~~---------~~~~~~~~~~~nv~~t~~ll~a~~~~----~v~r~V~~SS~~vy~~~~~~~~~~ 145 (485)
..+++|++||... ..++-+....+|..++.++..+...+ .-.-+|.+||.-.+-
T Consensus 74 k~~P~lNvliNNAGIqr~~dlt~~e~~~~~~~~eI~~Nl~API~Lt~~~lphl~~q~~a~IInVSSGLafv--------- 144 (245)
T COG3967 74 KEYPNLNVLINNAGIQRNEDLTGAEDLLDDAEQEIATNLLAPIRLTALLLPHLLRQPEATIINVSSGLAFV--------- 144 (245)
T ss_pred hhCCchheeeecccccchhhccCCcchhhHHHHHHHHhhhhHHHHHHHHHHHHHhCCCceEEEeccccccC---------
Confidence 3699999999221 11233556789999999888776554 234699999965542
Q ss_pred CCCCCCCCCCCchHHHHHHHHHHHHHHHh---CCCCceEEEEecCCcccC
Q 047227 146 NEALPYPPKHNDFYSATKAEGEALVIKAN---GTNGLLTCCIRPSSIFGP 192 (485)
Q Consensus 146 ~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~---~~~g~~~~ilRp~~v~Gp 192 (485)
|......|..+|+....+-..+. +..++++.=+-|+.|--+
T Consensus 145 ------Pm~~~PvYcaTKAaiHsyt~aLR~Qlk~t~veVIE~~PP~V~t~ 188 (245)
T COG3967 145 ------PMASTPVYCATKAAIHSYTLALREQLKDTSVEVIELAPPLVDTT 188 (245)
T ss_pred ------cccccccchhhHHHHHHHHHHHHHHhhhcceEEEEecCCceecC
Confidence 23344469999998877654443 445788888889988654
|
|
| >PTZ00325 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.4e-09 Score=106.19 Aligned_cols=184 Identities=15% Similarity=0.063 Sum_probs=122.1
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCC-ceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcC
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDM-FSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQG 83 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~ 83 (485)
.+|+||+|+|++|.+|+.++..|..++. .+++++|+........ + +.+ ........+.+|+.++.+.+++
T Consensus 6 ~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g~a~--D---l~~----~~~~~~v~~~td~~~~~~~l~g 76 (321)
T PTZ00325 6 LKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGVAA--D---LSH----IDTPAKVTGYADGELWEKALRG 76 (321)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCccccc--c---hhh----cCcCceEEEecCCCchHHHhCC
Confidence 4578999999999999999999986553 4799999832111000 0 111 1112334566665556788999
Q ss_pred CCEEEEcCCCCC-CCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCccccccCCCCcCC--CCCCCCCCCCCCchHH
Q 047227 84 AEVVFHMAAPNS-SINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVVFDGVHGIIN--GNEALPYPPKHNDFYS 160 (485)
Q Consensus 84 ~d~Vih~aa~~~-~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy~~~~~~~~~--~~e~~~~~~~~~~~Y~ 160 (485)
+|+||+++|... ...+....+..|+..++++++++++++++++|+++|.-+-.-. .... ..+.. ...|...||
T Consensus 77 aDvVVitaG~~~~~~~tR~dll~~N~~i~~~i~~~i~~~~~~~iviv~SNPvdv~~--~~~~~~~~~~s--g~p~~~viG 152 (321)
T PTZ00325 77 ADLVLICAGVPRKPGMTRDDLFNTNAPIVRDLVAAVASSAPKAIVGIVSNPVNSTV--PIAAETLKKAG--VYDPRKLFG 152 (321)
T ss_pred CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHH--HHHHhhhhhcc--CCChhheee
Confidence 999999999543 3346778899999999999999999999999999996553210 0000 01111 234556677
Q ss_pred HHHHHHHHHHHHHhCCCCceEEEEecCCcccCCCC-CChHHHH
Q 047227 161 ATKAEGEALVIKANGTNGLLTCCIRPSSIFGPGDR-LLVPSLV 202 (485)
Q Consensus 161 ~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~-~~~~~~~ 202 (485)
.+-...-++-...++..++....++ +.|+|.+.+ ..++.|-
T Consensus 153 ~g~LDs~R~r~~la~~l~v~~~~V~-~~VlGeHGd~s~v~~~S 194 (321)
T PTZ00325 153 VTTLDVVRARKFVAEALGMNPYDVN-VPVVGGHSGVTIVPLLS 194 (321)
T ss_pred chhHHHHHHHHHHHHHhCcChhheE-EEEEeecCCcccccchh
Confidence 6644444444445566778877887 888998766 4555543
|
|
| >KOG1610 consensus Corticosteroid 11-beta-dehydrogenase and related short chain-type dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.2e-08 Score=96.24 Aligned_cols=163 Identities=23% Similarity=0.207 Sum_probs=119.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc---
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ--- 82 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 82 (485)
..+-|||||+..-.|..++++|.++| +.|.+........ +. +......++...++.|+++++++.++.+
T Consensus 28 ~~k~VlITGCDSGfG~~LA~~L~~~G-f~V~Agcl~~~ga----e~---L~~~~~s~rl~t~~LDVT~~esi~~a~~~V~ 99 (322)
T KOG1610|consen 28 SDKAVLITGCDSGFGRLLAKKLDKKG-FRVFAGCLTEEGA----ES---LRGETKSPRLRTLQLDVTKPESVKEAAQWVK 99 (322)
T ss_pred CCcEEEEecCCcHHHHHHHHHHHhcC-CEEEEEeecCchH----HH---HhhhhcCCcceeEeeccCCHHHHHHHHHHHH
Confidence 45789999999999999999999999 6888776433211 11 2222226789999999999999988864
Q ss_pred ------CCCEEEEcCCCCC--------CCCchhhhHHHHHHHHHHHHHHHHhc---CCCEEEEecCccccccCCCCcCCC
Q 047227 83 ------GAEVVFHMAAPNS--------SINNHKLHHSVNVEGTKNVIDACAEL---KVKRLIYTSSPSVVFDGVHGIING 145 (485)
Q Consensus 83 ------~~d~Vih~aa~~~--------~~~~~~~~~~~nv~~t~~ll~a~~~~---~v~r~V~~SS~~vy~~~~~~~~~~ 145 (485)
+--.|||+||... ..+++....++|..|+..+-.+.... .-.|+|++||..-
T Consensus 100 ~~l~~~gLwglVNNAGi~~~~g~~ewl~~~d~~~~l~vNllG~irvT~~~lpLlr~arGRvVnvsS~~G----------- 168 (322)
T KOG1610|consen 100 KHLGEDGLWGLVNNAGISGFLGPDEWLTVEDYRKVLNVNLLGTIRVTKAFLPLLRRARGRVVNVSSVLG----------- 168 (322)
T ss_pred HhcccccceeEEeccccccccCccccccHHHHHHHHhhhhhhHHHHHHHHHHHHHhccCeEEEeccccc-----------
Confidence 3568999999221 23467889999999988876665432 1359999998532
Q ss_pred CCCCCCCCCCCchHHHHHHHHHHHHHHHhC---CCCceEEEEecCCcccC
Q 047227 146 NEALPYPPKHNDFYSATKAEGEALVIKANG---TNGLLTCCIRPSSIFGP 192 (485)
Q Consensus 146 ~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~---~~g~~~~ilRp~~v~Gp 192 (485)
. .+.....+|..||...|.....+.. .+|+++.++-|| .|-.
T Consensus 169 R----~~~p~~g~Y~~SK~aVeaf~D~lR~EL~~fGV~VsiiePG-~f~T 213 (322)
T KOG1610|consen 169 R----VALPALGPYCVSKFAVEAFSDSLRRELRPFGVKVSIIEPG-FFKT 213 (322)
T ss_pred C----ccCcccccchhhHHHHHHHHHHHHHHHHhcCcEEEEeccC-cccc
Confidence 1 1234567899999999998766543 489999999999 4443
|
|
| >KOG1611 consensus Predicted short chain-type dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.6e-07 Score=84.44 Aligned_cols=203 Identities=17% Similarity=0.136 Sum_probs=133.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCceEEEeecC-CccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc----
Q 047227 8 RLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLS-DSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ---- 82 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~---- 82 (485)
+.|+||||.--||--++++|++...-++.+..+. +... .++ ........++++.++.|+++.+++.++.+
T Consensus 4 ksv~ItGaNRGIGlgLVk~llk~~~i~~iiat~r~~e~a---~~~--l~~k~~~d~rvHii~Ldvt~deS~~~~~~~V~~ 78 (249)
T KOG1611|consen 4 KSVFITGANRGIGLGLVKELLKDKGIEVIIATARDPEKA---ATE--LALKSKSDSRVHIIQLDVTCDESIDNFVQEVEK 78 (249)
T ss_pred ccEEEeccCcchhHHHHHHHhcCCCcEEEEEecCChHHh---hHH--HHHhhccCCceEEEEEecccHHHHHHHHHHHHh
Confidence 4699999999999999999998632455444443 3322 111 11122246899999999999877766653
Q ss_pred -----CCCEEEEcCCCCC--------CCCchhhhHHHHHHHHHHHHHHHH----hcCC-----------CEEEEecCccc
Q 047227 83 -----GAEVVFHMAAPNS--------SINNHKLHHSVNVEGTKNVIDACA----ELKV-----------KRLIYTSSPSV 134 (485)
Q Consensus 83 -----~~d~Vih~aa~~~--------~~~~~~~~~~~nv~~t~~ll~a~~----~~~v-----------~r~V~~SS~~v 134 (485)
|.|+.+++||... ........+++|+.++..+.+++- +... ..+|++||...
T Consensus 79 iVg~~GlnlLinNaGi~~~y~~~~~~~r~~~~~~~~tN~v~~il~~Q~~lPLLkkaas~~~gd~~s~~raaIinisS~~~ 158 (249)
T KOG1611|consen 79 IVGSDGLNLLINNAGIALSYNTVLKPSRAVLLEQYETNAVGPILLTQAFLPLLKKAASKVSGDGLSVSRAAIINISSSAG 158 (249)
T ss_pred hcccCCceEEEeccceeeecccccCCcHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhcccCCcccccceeEEEeecccc
Confidence 5799999999221 112245689999999877766532 2222 26888988544
Q ss_pred cccCCCCcCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHh---CCCCceEEEEecCCcccCCCCCChHHHHHHHHcCCCe
Q 047227 135 VFDGVHGIINGNEALPYPPKHNDFYSATKAEGEALVIKAN---GTNGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSK 211 (485)
Q Consensus 135 y~~~~~~~~~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~---~~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~ 211 (485)
-- ......+...|..||++.-...+... +..++-++.+.||.|=-.- |+
T Consensus 159 s~------------~~~~~~~~~AYrmSKaAlN~f~ksls~dL~~~~ilv~sihPGwV~TDM--------------gg-- 210 (249)
T KOG1611|consen 159 SI------------GGFRPGGLSAYRMSKAALNMFAKSLSVDLKDDHILVVSIHPGWVQTDM--------------GG-- 210 (249)
T ss_pred cc------------CCCCCcchhhhHhhHHHHHHHHHHhhhhhcCCcEEEEEecCCeEEcCC--------------CC--
Confidence 20 00124567899999999988887765 3467889999999874221 11
Q ss_pred EEecCCCceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEe
Q 047227 212 FIIGDGNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFV 257 (485)
Q Consensus 212 ~~~g~g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv 257 (485)
.-.-+.+++-+.-++..+..+... ..|.-||-
T Consensus 211 --------~~a~ltveeSts~l~~~i~kL~~~------hnG~ffn~ 242 (249)
T KOG1611|consen 211 --------KKAALTVEESTSKLLASINKLKNE------HNGGFFNR 242 (249)
T ss_pred --------CCcccchhhhHHHHHHHHHhcCcc------cCcceEcc
Confidence 112455777778788777766554 56665554
|
|
| >PLN00106 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.90 E-value=3.2e-09 Score=103.70 Aligned_cols=181 Identities=15% Similarity=0.089 Sum_probs=122.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCC-ceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCCC
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDM-FSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGAE 85 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~d 85 (485)
.+||+|+|++|.+|+.++..|..++. .+++++|....... . .+ +..........++.+.+++.++++++|
T Consensus 18 ~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~g~----a----~D-l~~~~~~~~i~~~~~~~d~~~~l~~aD 88 (323)
T PLN00106 18 GFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGV----A----AD-VSHINTPAQVRGFLGDDQLGDALKGAD 88 (323)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCCee----E----ch-hhhCCcCceEEEEeCCCCHHHHcCCCC
Confidence 46999999999999999999997764 37999998652110 0 00 111111222334433445778999999
Q ss_pred EEEEcCCCC-CCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCccccccCCCCcCC--CCCCCCCCCCCCchHHHH
Q 047227 86 VVFHMAAPN-SSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVVFDGVHGIIN--GNEALPYPPKHNDFYSAT 162 (485)
Q Consensus 86 ~Vih~aa~~-~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy~~~~~~~~~--~~e~~~~~~~~~~~Y~~s 162 (485)
+|||+||.. ............|+..++++.+.+++++++++|+++|-=+=+ ...... ..... +..|...||.+
T Consensus 89 iVVitAG~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~aivivvSNPvD~--~~~i~t~~~~~~s--~~p~~~viG~~ 164 (323)
T PLN00106 89 LVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIISNPVNS--TVPIAAEVLKKAG--VYDPKKLFGVT 164 (323)
T ss_pred EEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCCccc--cHHHHHHHHHHcC--CCCcceEEEEe
Confidence 999999943 334567888999999999999999999999999988832200 000100 00111 24566788888
Q ss_pred HHHHHHHHHHHhCCCCceEEEEecCCcccCC-CCCChHHH
Q 047227 163 KAEGEALVIKANGTNGLLTCCIRPSSIFGPG-DRLLVPSL 201 (485)
Q Consensus 163 K~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~-~~~~~~~~ 201 (485)
+...+++-..+++..+++...++ +.|+|.+ +...++.|
T Consensus 165 ~LDs~Rl~~~lA~~lgv~~~~V~-~~ViGeHg~~s~vp~~ 203 (323)
T PLN00106 165 TLDVVRANTFVAEKKGLDPADVD-VPVVGGHAGITILPLL 203 (323)
T ss_pred cchHHHHHHHHHHHhCCChhheE-EEEEEeCCCccEeeeh
Confidence 88888988888888898888875 5667765 43444443
|
|
| >PF02453 Reticulon: Reticulon; InterPro: IPR003388 Eukaryotic proteins of the reticulon (RTN) family all share an association with the endoplasmic reticulum (ER) | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.1e-10 Score=104.19 Aligned_cols=100 Identities=29% Similarity=0.425 Sum_probs=42.7
Q ss_pred ccccccccchhhHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHhhcccccccCCCC------CCCCCCceeec
Q 047227 383 ADTLLWKDKKWTLTAVLILVAIYYIFIVPGYTIITAFSKLLLLMLIFLVIHSFLPEKIFGYTL------EKIPASSFHLS 456 (485)
Q Consensus 383 a~~l~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~ 456 (485)
+|.+.|+|.+.+...+++++++|++|.+.+++++|++|+++++++.+.+++... .+++++++ |+.+. ++++
T Consensus 2 ~dll~W~~~~~S~~v~~~~~~~~~l~~~~~~s~is~~s~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~ 78 (169)
T PF02453_consen 2 ADLLLWRDPKKSGIVFGAILLFWLLFWLFNYSLISLVSYILLLLLAISFLYRLL-SKVLSRSPKGPFKEPLDYD--LEIS 78 (169)
T ss_dssp ---------------------------------------------------THC-CCTCCHHHHCTTHHHHCHH--HHHC
T ss_pred ceeeEecCCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH-HHHhccCCCCCccCCcccc--cccc
Confidence 578899999999999999999999999999999999999999999999999999 88888766 44444 9999
Q ss_pred hhHHHHHHHHHHHHHHhHHHHHHHhccCC
Q 047227 457 DEKSLRLAHSVASSWNTSITVLKSLSKGN 485 (485)
Q Consensus 457 ~~~~~~~~~~~~~~~n~~~~~~~~~~~g~ 485 (485)
||.+++++.+++..||..++.+|++..|+
T Consensus 79 ~~~~~~~~~~~~~~~n~~~~~~~~l~~~~ 107 (169)
T PF02453_consen 79 EERVERLADSVAEWINSVLSWLRRLVFGE 107 (169)
T ss_dssp CHHHHHHHHHCCCCCCHHHHHHHCCCHCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 99999999999999999999999998764
|
Whereas amino-terminal regions are not related to one another, all reticulon proteins share a 200 amino acid residue region of sequence similarity at the C-terminal. This region contains two large hydrophobic regions separated by a 66 residue hydrophilic segment. The conserved hydrophobic C-terminal portion has been shown to play an essential role in the association of reticulons with the ER membrane. The hydrophobic portions are supposed to be membrane-embedded and the hydrophilic 66 residue localized to the lumenal/extracellular face of the membrane. Most reticulons have a di-lysine ER retention motif at the C-terminal. Because of their likely association with the rough as well as the smooth ER, the reticulons might play some role in transport processes or in regulation of intracellular calcium levels. It has been suggested that the reticulons may be serving as ER-associated channel-like complexes [, , , ].; GO: 0005783 endoplasmic reticulum; PDB: 2KO2_A 2JV5_A 2G31_A. |
| >KOG1207 consensus Diacetyl reductase/L-xylulose reductase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.81 E-value=3.9e-09 Score=90.29 Aligned_cols=206 Identities=17% Similarity=0.100 Sum_probs=141.6
Q ss_pred CCCCCCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCC-CeEEEEecCCCHHHHHH
Q 047227 1 MSGEENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSG-RAHYVSFDLRHKAQVLQ 79 (485)
Q Consensus 1 M~~~~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~Dl~d~~~l~~ 79 (485)
|..+..+++|++||+.--||+.++..|.+.| ..|+.+.|.+..- ...-...+ -+..+.+|+.+.+.+.+
T Consensus 1 M~t~laG~~vlvTgagaGIG~~~v~~La~aG-A~ViAvaR~~a~L---------~sLV~e~p~~I~Pi~~Dls~wea~~~ 70 (245)
T KOG1207|consen 1 MKTSLAGVIVLVTGAGAGIGKEIVLSLAKAG-AQVIAVARNEANL---------LSLVKETPSLIIPIVGDLSAWEALFK 70 (245)
T ss_pred CcccccceEEEeecccccccHHHHHHHHhcC-CEEEEEecCHHHH---------HHHHhhCCcceeeeEecccHHHHHHH
Confidence 5556678999999999999999999999999 6999998875421 11111123 38889999999998888
Q ss_pred HhcC---CCEEEEcCCCC--C-----CCCchhhhHHHHHHHHHHHHHHHHh----cC-CCEEEEecCccccccCCCCcCC
Q 047227 80 ALQG---AEVVFHMAAPN--S-----SINNHKLHHSVNVEGTKNVIDACAE----LK-VKRLIYTSSPSVVFDGVHGIIN 144 (485)
Q Consensus 80 ~~~~---~d~Vih~aa~~--~-----~~~~~~~~~~~nv~~t~~ll~a~~~----~~-v~r~V~~SS~~vy~~~~~~~~~ 144 (485)
++-. .|-.++.||.. . .....+.++++|+.+..++.+...+ .+ ...+|.+||.+..
T Consensus 71 ~l~~v~pidgLVNNAgvA~~~pf~eiT~q~fDr~F~VNvravi~v~Q~var~lv~R~~~GaIVNvSSqas~--------- 141 (245)
T KOG1207|consen 71 LLVPVFPIDGLVNNAGVATNHPFGEITQQSFDRTFAVNVRAVILVAQLVARNLVDRQIKGAIVNVSSQASI--------- 141 (245)
T ss_pred hhcccCchhhhhccchhhhcchHHHHhHHhhcceeeeeeeeeeeHHHHHHHhhhhccCCceEEEecchhcc---------
Confidence 8864 69999999921 1 2345667889999998888777332 22 3469999996543
Q ss_pred CCCCCCCCCCCCchHHHHHHHHHHHHHHHhCCC---CceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCcee
Q 047227 145 GNEALPYPPKHNDFYSATKAEGEALVIKANGTN---GLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVY 221 (485)
Q Consensus 145 ~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~~ 221 (485)
.+....+.|..+|++.+.+-+.++.+. .+++..+.|..++-.-.... |-+-.++++.. +.-+.-
T Consensus 142 ------R~~~nHtvYcatKaALDmlTk~lAlELGp~kIRVNsVNPTVVmT~MG~dn---WSDP~K~k~mL----~riPl~ 208 (245)
T KOG1207|consen 142 ------RPLDNHTVYCATKAALDMLTKCLALELGPQKIRVNSVNPTVVMTDMGRDN---WSDPDKKKKML----DRIPLK 208 (245)
T ss_pred ------cccCCceEEeecHHHHHHHHHHHHHhhCcceeEeeccCCeEEEecccccc---cCCchhccchh----hhCchh
Confidence 135567889999999999888776554 48888999988875322111 11111222111 111233
Q ss_pred ecccHHHHHHHHHHHHH
Q 047227 222 DFTYVANVAHAHICAER 238 (485)
Q Consensus 222 ~~i~v~D~a~a~~~~~~ 238 (485)
-|.-|+.++.++..++.
T Consensus 209 rFaEV~eVVnA~lfLLS 225 (245)
T KOG1207|consen 209 RFAEVDEVVNAVLFLLS 225 (245)
T ss_pred hhhHHHHHHhhheeeee
Confidence 47788999888877644
|
|
| >PRK08309 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=2.2e-08 Score=89.68 Aligned_cols=101 Identities=16% Similarity=0.211 Sum_probs=74.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcC----
Q 047227 8 RLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQG---- 83 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~---- 83 (485)
|+++|||||||+|. +++.|.++| ++|++.+|.+.... . +........++..+.+|++|++++.+++++
T Consensus 1 m~vlVtGGtG~gg~-la~~L~~~G-~~V~v~~R~~~~~~----~--l~~~l~~~~~i~~~~~Dv~d~~sv~~~i~~~l~~ 72 (177)
T PRK08309 1 MHALVIGGTGMLKR-VSLWLCEKG-FHVSVIARREVKLE----N--VKRESTTPESITPLPLDYHDDDALKLAIKSTIEK 72 (177)
T ss_pred CEEEEECcCHHHHH-HHHHHHHCc-CEEEEEECCHHHHH----H--HHHHhhcCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 58999999998876 999999999 69998887643110 0 111111234678889999999988887752
Q ss_pred ---CCEEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCC----EEEEecC
Q 047227 84 ---AEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVK----RLIYTSS 131 (485)
Q Consensus 84 ---~d~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~----r~V~~SS 131 (485)
.|.+|+.+ .+.++.++..+|++.|++ ||+++=.
T Consensus 73 ~g~id~lv~~v---------------h~~~~~~~~~~~~~~gv~~~~~~~~h~~g 112 (177)
T PRK08309 73 NGPFDLAVAWI---------------HSSAKDALSVVCRELDGSSETYRLFHVLG 112 (177)
T ss_pred cCCCeEEEEec---------------cccchhhHHHHHHHHccCCCCceEEEEeC
Confidence 57777544 455778999999999998 8988754
|
|
| >KOG1199 consensus Short-chain alcohol dehydrogenase/3-hydroxyacyl-CoA dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.68 E-value=6.1e-08 Score=82.87 Aligned_cols=202 Identities=23% Similarity=0.216 Sum_probs=130.8
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc--
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ-- 82 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 82 (485)
.++-..|||||..-+|...++.|.++| ..|.++|...+...+-.++ ...++-+..+|+++++++..++.
T Consensus 7 ~kglvalvtggasglg~ataerlakqg-asv~lldlp~skg~~vake--------lg~~~vf~padvtsekdv~aala~a 77 (260)
T KOG1199|consen 7 TKGLVALVTGGASGLGKATAERLAKQG-ASVALLDLPQSKGADVAKE--------LGGKVVFTPADVTSEKDVRAALAKA 77 (260)
T ss_pred hcCeeEEeecCcccccHHHHHHHHhcC-ceEEEEeCCcccchHHHHH--------hCCceEEeccccCcHHHHHHHHHHH
Confidence 445678999999999999999999999 6899998876543322111 24678899999999998888874
Q ss_pred -----CCCEEEEcCCCC-------------CCCCchhhhHHHHHHHHHHHHHHHHhc--------CCCEEEEecCcccc-
Q 047227 83 -----GAEVVFHMAAPN-------------SSINNHKLHHSVNVEGTKNVIDACAEL--------KVKRLIYTSSPSVV- 135 (485)
Q Consensus 83 -----~~d~Vih~aa~~-------------~~~~~~~~~~~~nv~~t~~ll~a~~~~--------~v~r~V~~SS~~vy- 135 (485)
..|+.++||+.. +..++....+++|+.||.|+++..... +-+|=|.+-|++|-
T Consensus 78 k~kfgrld~~vncagia~a~ktyn~~k~~~h~ledfqrvidvn~~gtfnvirl~aglmg~nepdq~gqrgviintasvaa 157 (260)
T KOG1199|consen 78 KAKFGRLDALVNCAGIAYAFKTYNVQKKKHHDLEDFQRVIDVNVLGTFNVIRLGAGLMGENEPDQNGQRGVIINTASVAA 157 (260)
T ss_pred HhhccceeeeeeccceeeeeeeeeecccccccHHHhhheeeeeeeeeeeeeeehhhhhcCCCCCCCCcceEEEeeceeee
Confidence 279999999921 123356678899999999998764421 22344444444443
Q ss_pred ccCCCCcCCCCCCCCCCCCCCchHHHHHHHHHHH----HHHHhCCCCceEEEEecCCcccCCCCCChHHHHHHHHcCCCe
Q 047227 136 FDGVHGIINGNEALPYPPKHNDFYSATKAEGEAL----VIKANGTNGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSK 211 (485)
Q Consensus 136 ~~~~~~~~~~~e~~~~~~~~~~~Y~~sK~~~E~~----~~~~~~~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~ 211 (485)
+++ ......|+.||...--+ .+.++ ..|++++.+-|+..--|--. .+|.-+....... +
T Consensus 158 fdg--------------q~gqaaysaskgaivgmtlpiardla-~~gir~~tiapglf~tplls-slpekv~~fla~~-i 220 (260)
T KOG1199|consen 158 FDG--------------QTGQAAYSASKGAIVGMTLPIARDLA-GDGIRFNTIAPGLFDTPLLS-SLPEKVKSFLAQL-I 220 (260)
T ss_pred ecC--------------ccchhhhhcccCceEeeechhhhhcc-cCceEEEeecccccCChhhh-hhhHHHHHHHHHh-C
Confidence 211 34567899999866544 34443 35899999998874333211 1222222222221 1
Q ss_pred EEecCCCceeecccHHHHHHHHHHHHH
Q 047227 212 FIIGDGNNVYDFTYVANVAHAHICAER 238 (485)
Q Consensus 212 ~~~g~g~~~~~~i~v~D~a~a~~~~~~ 238 (485)
+.+ .-.-|..+.++.+-.+++
T Consensus 221 pfp------srlg~p~eyahlvqaiie 241 (260)
T KOG1199|consen 221 PFP------SRLGHPHEYAHLVQAIIE 241 (260)
T ss_pred CCc------hhcCChHHHHHHHHHHHh
Confidence 111 124456777777777766
|
|
| >COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.2e-07 Score=93.86 Aligned_cols=99 Identities=20% Similarity=0.227 Sum_probs=77.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCCCE
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGAEV 86 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~d~ 86 (485)
||+|||.|+ |+||+.++..|.++|..+|++.+|+...... ......++++..+.|+.|.+++.+++++.|+
T Consensus 1 m~~ilviGa-G~Vg~~va~~la~~~d~~V~iAdRs~~~~~~--------i~~~~~~~v~~~~vD~~d~~al~~li~~~d~ 71 (389)
T COG1748 1 MMKILVIGA-GGVGSVVAHKLAQNGDGEVTIADRSKEKCAR--------IAELIGGKVEALQVDAADVDALVALIKDFDL 71 (389)
T ss_pred CCcEEEECC-chhHHHHHHHHHhCCCceEEEEeCCHHHHHH--------HHhhccccceeEEecccChHHHHHHHhcCCE
Confidence 479999997 9999999999999986799999998542211 1111134899999999999999999999999
Q ss_pred EEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEec
Q 047227 87 VFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTS 130 (485)
Q Consensus 87 Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~S 130 (485)
||+++.+... .+++++|.+.|+ +++=+|
T Consensus 72 VIn~~p~~~~---------------~~i~ka~i~~gv-~yvDts 99 (389)
T COG1748 72 VINAAPPFVD---------------LTILKACIKTGV-DYVDTS 99 (389)
T ss_pred EEEeCCchhh---------------HHHHHHHHHhCC-CEEEcc
Confidence 9999973221 279999999997 555333
|
|
| >cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases | Back alignment and domain information |
|---|
Probab=98.59 E-value=4.8e-07 Score=89.06 Aligned_cols=119 Identities=16% Similarity=0.119 Sum_probs=79.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCC------ceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHH
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDM------FSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQA 80 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~------~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~ 80 (485)
..+|+|||++|++|++++..|+..+. .+|+++|+............. +.+ -......|+.+..++.+.
T Consensus 2 ~~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~D-l~d-----~~~~~~~~~~~~~~~~~~ 75 (325)
T cd01336 2 PIRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVME-LQD-----CAFPLLKSVVATTDPEEA 75 (325)
T ss_pred CeEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeee-hhh-----ccccccCCceecCCHHHH
Confidence 36899999999999999999998553 379999986531111100000 000 000112344444567788
Q ss_pred hcCCCEEEEcCCCC-CCCCchhhhHHHHHHHHHHHHHHHHhcC-CC-EEEEecC
Q 047227 81 LQGAEVVFHMAAPN-SSINNHKLHHSVNVEGTKNVIDACAELK-VK-RLIYTSS 131 (485)
Q Consensus 81 ~~~~d~Vih~aa~~-~~~~~~~~~~~~nv~~t~~ll~a~~~~~-v~-r~V~~SS 131 (485)
++++|+|||+||.. ....+....++.|+.-.+.+.....++. .. .++.+|.
T Consensus 76 l~~aDiVI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsN 129 (325)
T cd01336 76 FKDVDVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGN 129 (325)
T ss_pred hCCCCEEEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecC
Confidence 89999999999943 3345668899999999999999988884 33 4555554
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK06720 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=5.5e-07 Score=80.11 Aligned_cols=125 Identities=14% Similarity=0.214 Sum_probs=78.9
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhh-hcCCCeEEEEecCCCHHHHHHHhc-
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEA-LRSGRAHYVSFDLRHKAQVLQALQ- 82 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~l~~~~~- 82 (485)
.+++.++||||+|.||..+++.|.++| ++|.+.++....... ..... ........+.+|++|.+++.++++
T Consensus 14 l~gk~~lVTGa~~GIG~aia~~l~~~G-~~V~l~~r~~~~~~~------~~~~l~~~~~~~~~~~~Dl~~~~~v~~~v~~ 86 (169)
T PRK06720 14 LAGKVAIVTGGGIGIGRNTALLLAKQG-AKVIVTDIDQESGQA------TVEEITNLGGEALFVSYDMEKQGDWQRVISI 86 (169)
T ss_pred cCCCEEEEecCCChHHHHHHHHHHHCC-CEEEEEECCHHHHHH------HHHHHHhcCCcEEEEEccCCCHHHHHHHHHH
Confidence 346899999999999999999999999 699998876431110 00111 112456778999999988777542
Q ss_pred ------CCCEEEEcCCCCC---CC-C-chhhhHHHHHH----HHHHHHHHHHhc-------CCCEEEEecCccccc
Q 047227 83 ------GAEVVFHMAAPNS---SI-N-NHKLHHSVNVE----GTKNVIDACAEL-------KVKRLIYTSSPSVVF 136 (485)
Q Consensus 83 ------~~d~Vih~aa~~~---~~-~-~~~~~~~~nv~----~t~~ll~a~~~~-------~v~r~V~~SS~~vy~ 136 (485)
+.|.+||+||... .. . ..+.....|+. .++.+....++. +..||..+||.++.+
T Consensus 87 ~~~~~G~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (169)
T PRK06720 87 TLNAFSRIDMLFQNAGLYKIDSIFSRQQENDSNVLCINDVWIEIKQLTSSFMKQQEEVVLSDLPIFGIIGTKGQSF 162 (169)
T ss_pred HHHHcCCCCEEEECCCcCCCCCcccccchhHhhceeccHHHHHHHHHHHHHHhcCCEEEeecCceeeEeccccccc
Confidence 4899999999211 11 1 11111233333 333344433332 356899999877643
|
|
| >cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases | Back alignment and domain information |
|---|
Probab=98.52 E-value=2.6e-07 Score=90.71 Aligned_cols=189 Identities=14% Similarity=0.118 Sum_probs=124.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCc------eEEEeecCCccccCCccchhhhhhh-hcCCCeEEEEecCCCHHHHHH
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMF------SVRIADLSDSIALEPHEEQGILGEA-LRSGRAHYVSFDLRHKAQVLQ 79 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~------~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~l~~ 79 (485)
.+||.|+|++|.+|+.++..|+..|.. ++.++|..............+.... ....+++. .. ...+
T Consensus 2 p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i-~~------~~~~ 74 (322)
T cd01338 2 PVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVI-TD------DPNV 74 (322)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEE-ec------CcHH
Confidence 479999999999999999999987753 5888888543211111111111100 00012222 11 1246
Q ss_pred HhcCCCEEEEcCCC-CCCCCchhhhHHHHHHHHHHHHHHHHhcCC-C-EEEEecCcc---ccccCCCCcCCCCCCCCCCC
Q 047227 80 ALQGAEVVFHMAAP-NSSINNHKLHHSVNVEGTKNVIDACAELKV-K-RLIYTSSPS---VVFDGVHGIINGNEALPYPP 153 (485)
Q Consensus 80 ~~~~~d~Vih~aa~-~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v-~-r~V~~SS~~---vy~~~~~~~~~~~e~~~~~~ 153 (485)
.++++|+||-+||. .....+....+..|+.-.+.+.....+.+. . .++.+|-+. +|. . ...+ + ..
T Consensus 75 ~~~daDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~~------~-~k~s-g-~~ 145 (322)
T cd01338 75 AFKDADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVGNPCNTNALI------A-MKNA-P-DI 145 (322)
T ss_pred HhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecCcHHHHHHH------H-HHHc-C-CC
Confidence 67899999999994 334446778899999999999999998873 4 455555321 010 0 0111 0 13
Q ss_pred CCCchHHHHHHHHHHHHHHHhCCCCceEEEEecCCcccCCCCCChHHHHHHHHcCCCe
Q 047227 154 KHNDFYSATKAEGEALVIKANGTNGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSK 211 (485)
Q Consensus 154 ~~~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~ 211 (485)
.+...||.++...+++...+++..+++...+|..+|||++....++.|......|.++
T Consensus 146 p~~~ViG~t~LDs~Rl~~~la~~lgv~~~~v~~~~V~GeHG~s~vp~~S~~~v~g~pl 203 (322)
T cd01338 146 PPDNFTAMTRLDHNRAKSQLAKKAGVPVTDVKNMVIWGNHSPTQYPDFTNATIGGKPA 203 (322)
T ss_pred ChHheEEehHHHHHHHHHHHHHHhCcChhHeEEEEEEeCCcccEEEehhhcEECCEeH
Confidence 4556888899999999999999999999999999999998666666666555555543
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK09620 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=6.4e-07 Score=83.44 Aligned_cols=78 Identities=17% Similarity=0.100 Sum_probs=54.1
Q ss_pred CCCEEEEEcCC----------------CchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEe
Q 047227 6 NERLCVVTGGR----------------GFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSF 69 (485)
Q Consensus 6 ~~~~iLVtGgt----------------G~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 69 (485)
.+|+||||+|. ||+|+++++.|+++| ++|+++++..... +... ........+.+
T Consensus 2 ~gk~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~G-a~V~li~g~~~~~--~~~~-------~~~~~~~~V~s 71 (229)
T PRK09620 2 KGKKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISKG-AHVIYLHGYFAEK--PNDI-------NNQLELHPFEG 71 (229)
T ss_pred CCCEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHCC-CeEEEEeCCCcCC--Cccc-------CCceeEEEEec
Confidence 47899999886 999999999999999 5898887542210 0000 00123345566
Q ss_pred cCCCHHHHHHHhc--CCCEEEEcCCC
Q 047227 70 DLRHKAQVLQALQ--GAEVVFHMAAP 93 (485)
Q Consensus 70 Dl~d~~~l~~~~~--~~d~Vih~aa~ 93 (485)
|....+.+.++++ ++|+|||+||.
T Consensus 72 ~~d~~~~l~~~~~~~~~D~VIH~AAv 97 (229)
T PRK09620 72 IIDLQDKMKSIITHEKVDAVIMAAAG 97 (229)
T ss_pred HHHHHHHHHHHhcccCCCEEEECccc
Confidence 4444457888885 69999999994
|
|
| >KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.44 E-value=2.2e-06 Score=81.06 Aligned_cols=166 Identities=16% Similarity=0.174 Sum_probs=110.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHH----HHHHhc
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQ----VLQALQ 82 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~----l~~~~~ 82 (485)
+...+|||||.-||++.++.|.++| .+|.++.|..++-....++ ..+.. .-++..+..|.++.+. +.+.+.
T Consensus 49 g~WAVVTGaTDGIGKayA~eLAkrG-~nvvLIsRt~~KL~~v~kE---I~~~~-~vev~~i~~Dft~~~~~ye~i~~~l~ 123 (312)
T KOG1014|consen 49 GSWAVVTGATDGIGKAYARELAKRG-FNVVLISRTQEKLEAVAKE---IEEKY-KVEVRIIAIDFTKGDEVYEKLLEKLA 123 (312)
T ss_pred CCEEEEECCCCcchHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHH---HHHHh-CcEEEEEEEecCCCchhHHHHHHHhc
Confidence 4789999999999999999999999 6999999986643222221 11111 2458888999987654 555555
Q ss_pred C--CCEEEEcCCCCCCC-----C----chhhhHHHHHHHHHHH----HHHHHhcCCCEEEEecCccccccCCCCcCCCCC
Q 047227 83 G--AEVVFHMAAPNSSI-----N----NHKLHHSVNVEGTKNV----IDACAELKVKRLIYTSSPSVVFDGVHGIINGNE 147 (485)
Q Consensus 83 ~--~d~Vih~aa~~~~~-----~----~~~~~~~~nv~~t~~l----l~a~~~~~v~r~V~~SS~~vy~~~~~~~~~~~e 147 (485)
+ +.++||++|..... + .......+|+.++..+ +--+.+.+-.-+|.+||.+-.-
T Consensus 124 ~~~VgILVNNvG~~~~~P~~f~~~~~~~~~~ii~vN~~~~~~~t~~ilp~M~~r~~G~IvnigS~ag~~----------- 192 (312)
T KOG1014|consen 124 GLDVGILVNNVGMSYDYPESFLKYPEGELQNIINVNILSVTLLTQLILPGMVERKKGIIVNIGSFAGLI----------- 192 (312)
T ss_pred CCceEEEEecccccCCCcHHHHhCchhhhhheeEEecchHHHHHHHhhhhhhcCCCceEEEeccccccc-----------
Confidence 5 55799999933211 1 1123445566554433 3334444555799999854321
Q ss_pred CCCCCCCCCchHHHHHHHHHHHHHHHhC---CCCceEEEEecCCcccC
Q 047227 148 ALPYPPKHNDFYSATKAEGEALVIKANG---TNGLLTCCIRPSSIFGP 192 (485)
Q Consensus 148 ~~~~~~~~~~~Y~~sK~~~E~~~~~~~~---~~g~~~~ilRp~~v~Gp 192 (485)
|..-.+.|+.+|...+.+-..+.+ .+|+.+-.+-|..|-++
T Consensus 193 ----p~p~~s~ysasK~~v~~~S~~L~~Ey~~~gI~Vq~v~p~~VaTk 236 (312)
T KOG1014|consen 193 ----PTPLLSVYSASKAFVDFFSRCLQKEYESKGIFVQSVIPYLVATK 236 (312)
T ss_pred ----cChhHHHHHHHHHHHHHHHHHHHHHHHhcCeEEEEeehhheecc
Confidence 234567899999988777655543 35888988888888765
|
|
| >KOG1204 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.9e-06 Score=77.62 Aligned_cols=163 Identities=12% Similarity=0.041 Sum_probs=107.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc---
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ--- 82 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 82 (485)
.++-|||||++--||..++..+.+.+. +.......+.... ++.. .... .....+..+|+.+...+.+.++
T Consensus 5 ~r~villTGaSrgiG~~~v~~i~aed~-e~~r~g~~r~~a~-~~~L---~v~~--gd~~v~~~g~~~e~~~l~al~e~~r 77 (253)
T KOG1204|consen 5 MRKVILLTGASRGIGTGSVATILAEDD-EALRYGVARLLAE-LEGL---KVAY--GDDFVHVVGDITEEQLLGALREAPR 77 (253)
T ss_pred cceEEEEecCCCCccHHHHHHHHhcch-HHHHHhhhccccc-ccce---EEEe--cCCcceechHHHHHHHHHHHHhhhh
Confidence 456799999999999999999998874 3332222221111 1000 0000 1223344566666554444332
Q ss_pred ----CCCEEEEcCCC----------CCCCCchhhhHHHHHHHHHHHHHHHHhc----C-CCEEEEecCccccccCCCCcC
Q 047227 83 ----GAEVVFHMAAP----------NSSINNHKLHHSVNVEGTKNVIDACAEL----K-VKRLIYTSSPSVVFDGVHGII 143 (485)
Q Consensus 83 ----~~d~Vih~aa~----------~~~~~~~~~~~~~nv~~t~~ll~a~~~~----~-v~r~V~~SS~~vy~~~~~~~~ 143 (485)
+-|.|||+||. ..+.+.+..+++.|......+-..+... . .+-+|++||....-
T Consensus 78 ~k~gkr~iiI~NAG~lgdvsk~~~~~~D~~qw~ky~~~NlfS~VsL~~~~l~~lk~~p~~~~vVnvSS~aav~------- 150 (253)
T KOG1204|consen 78 KKGGKRDIIIHNAGSLGDVSKGAVDLGDSDQWKKYWDLNLFSMVSLVQWALPKLKKSPVNGNVVNVSSLAAVR------- 150 (253)
T ss_pred hcCCceeEEEecCCCccchhhccCCcccHHHHHHHHHhhhhhHHhhHHHHHHHhcCCCccCeEEEecchhhhc-------
Confidence 26999999992 2344567889999999988887655543 2 36799999966541
Q ss_pred CCCCCCCCCCCCCchHHHHHHHHHHHHHHHhCCC--CceEEEEecCCcc
Q 047227 144 NGNEALPYPPKHNDFYSATKAEGEALVIKANGTN--GLLTCCIRPSSIF 190 (485)
Q Consensus 144 ~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~--g~~~~ilRp~~v~ 190 (485)
|......|..+|++-+.+.+.++.+. ++.+..++||.+=
T Consensus 151 --------p~~~wa~yc~~KaAr~m~f~~lA~EEp~~v~vl~~aPGvvD 191 (253)
T KOG1204|consen 151 --------PFSSWAAYCSSKAARNMYFMVLASEEPFDVRVLNYAPGVVD 191 (253)
T ss_pred --------cccHHHHhhhhHHHHHHHHHHHhhcCccceeEEEccCCccc
Confidence 34566789999999999999887543 7889999998763
|
|
| >TIGR00715 precor6x_red precorrin-6x reductase | Back alignment and domain information |
|---|
Probab=98.26 E-value=8.2e-06 Score=77.24 Aligned_cols=95 Identities=15% Similarity=0.163 Sum_probs=70.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc--CCC
Q 047227 8 RLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ--GAE 85 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--~~d 85 (485)
|+|||+||||. |+.+++.|.++| ++|.+..++.... ..+...+...+..+..|.+++.+.++ ++|
T Consensus 1 m~ILvlGGT~e-gr~la~~L~~~g-~~v~~s~~t~~~~-----------~~~~~~g~~~v~~g~l~~~~l~~~l~~~~i~ 67 (256)
T TIGR00715 1 MTVLLMGGTVD-SRAIAKGLIAQG-IEILVTVTTSEGK-----------HLYPIHQALTVHTGALDPQELREFLKRHSID 67 (256)
T ss_pred CeEEEEechHH-HHHHHHHHHhCC-CeEEEEEccCCcc-----------ccccccCCceEEECCCCHHHHHHHHHhcCCC
Confidence 68999999999 999999999999 5888877765311 11112234456677788888888886 499
Q ss_pred EEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEE
Q 047227 86 VVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLI 127 (485)
Q Consensus 86 ~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V 127 (485)
+|||.+.+. ....+.|+.++|++.|+.-+=
T Consensus 68 ~VIDAtHPf------------A~~is~~a~~a~~~~~ipylR 97 (256)
T TIGR00715 68 ILVDATHPF------------AAQITTNATAVCKELGIPYVR 97 (256)
T ss_pred EEEEcCCHH------------HHHHHHHHHHHHHHhCCcEEE
Confidence 999988531 235678999999999975333
|
This enzyme was found to be a monomer by gel filtration. |
| >PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase | Back alignment and domain information |
|---|
Probab=98.26 E-value=3.2e-06 Score=85.95 Aligned_cols=95 Identities=28% Similarity=0.387 Sum_probs=69.5
Q ss_pred EEEEcCCCchHHHHHHHHHhcCCc-eEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCCCEEE
Q 047227 10 CVVTGGRGFAARHLVEMLIRYDMF-SVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGAEVVF 88 (485)
Q Consensus 10 iLVtGgtG~iG~~l~~~Ll~~G~~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~d~Vi 88 (485)
|+|.|| |++|+.+++.|.+++.. +|++.+|+...... +...+...+++.+..|+.|.+++.+++++.|+||
T Consensus 1 IlvlG~-G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~-------~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVi 72 (386)
T PF03435_consen 1 ILVLGA-GRVGSAIARLLARRGPFEEVTVADRNPEKAER-------LAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVI 72 (386)
T ss_dssp EEEE---SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHH-------HHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEE
T ss_pred CEEEcC-cHHHHHHHHHHhcCCCCCcEEEEECCHHHHHH-------HHhhccccceeEEEEecCCHHHHHHHHhcCCEEE
Confidence 789999 99999999999999755 89999998652111 1111145789999999999999999999999999
Q ss_pred EcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEE
Q 047227 89 HMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIY 128 (485)
Q Consensus 89 h~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~ 128 (485)
|++++. ....++++|.+.|+ ++|=
T Consensus 73 n~~gp~---------------~~~~v~~~~i~~g~-~yvD 96 (386)
T PF03435_consen 73 NCAGPF---------------FGEPVARACIEAGV-HYVD 96 (386)
T ss_dssp E-SSGG---------------GHHHHHHHHHHHT--EEEE
T ss_pred ECCccc---------------hhHHHHHHHHHhCC-Ceec
Confidence 999843 11368999999987 6665
|
Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A. |
| >PRK06732 phosphopantothenate--cysteine ligase; Validated | Back alignment and domain information |
|---|
Probab=98.22 E-value=7.6e-06 Score=76.54 Aligned_cols=92 Identities=10% Similarity=0.141 Sum_probs=56.5
Q ss_pred CCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCC--HHHHHHHhcCCCEEEEcCC
Q 047227 15 GRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRH--KAQVLQALQGAEVVFHMAA 92 (485)
Q Consensus 15 gtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d--~~~l~~~~~~~d~Vih~aa 92 (485)
+|||+|+++++.|+++| ++|+++++..... + ....+++++.++-.+ .+.+.+.++++|+|||+||
T Consensus 24 SSG~iG~aLA~~L~~~G-~~V~li~r~~~~~--~----------~~~~~v~~i~v~s~~~m~~~l~~~~~~~DivIh~AA 90 (229)
T PRK06732 24 STGQLGKIIAETFLAAG-HEVTLVTTKTAVK--P----------EPHPNLSIIEIENVDDLLETLEPLVKDHDVLIHSMA 90 (229)
T ss_pred cchHHHHHHHHHHHhCC-CEEEEEECccccc--C----------CCCCCeEEEEEecHHHHHHHHHHHhcCCCEEEeCCc
Confidence 37999999999999999 6999987643210 0 012356666654332 2456666778999999999
Q ss_pred CCCCCCchhhhHHHHHHHHHHHHHHHHh
Q 047227 93 PNSSINNHKLHHSVNVEGTKNVIDACAE 120 (485)
Q Consensus 93 ~~~~~~~~~~~~~~nv~~t~~ll~a~~~ 120 (485)
..... .....-..+...+.++.+.+++
T Consensus 91 vsd~~-~~~~~~~~~~~~~~~v~~~~~~ 117 (229)
T PRK06732 91 VSDYT-PVYMTDLEEVSASDNLNEFLTK 117 (229)
T ss_pred cCCce-ehhhhhhhhhhhhhhhhhhhcc
Confidence 54321 1111123344445556666653
|
|
| >PRK05086 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=1.4e-05 Score=78.25 Aligned_cols=115 Identities=19% Similarity=0.107 Sum_probs=79.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHh-cCC-ceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCCC
Q 047227 8 RLCVVTGGRGFAARHLVEMLIR-YDM-FSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGAE 85 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~-~G~-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~d 85 (485)
|||+|+|++|.+|++++..|.. .+. ++++++++.+. . .... -+..+.+....+.+ .+.+++.+.++++|
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~-~--~g~a----lDl~~~~~~~~i~~--~~~~d~~~~l~~~D 71 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPV-T--PGVA----VDLSHIPTAVKIKG--FSGEDPTPALEGAD 71 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCC-C--ccee----hhhhcCCCCceEEE--eCCCCHHHHcCCCC
Confidence 6899999999999999988854 222 47888887632 1 0000 01111121223333 22224556778999
Q ss_pred EEEEcCCCCC-CCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecC
Q 047227 86 VVFHMAAPNS-SINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSS 131 (485)
Q Consensus 86 ~Vih~aa~~~-~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS 131 (485)
+||.++|... ...+....+..|+...+++++++++.+.+++|.+.|
T Consensus 72 iVIitaG~~~~~~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvs 118 (312)
T PRK05086 72 VVLISAGVARKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIIT 118 (312)
T ss_pred EEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc
Confidence 9999999433 334567889999999999999999999988888887
|
|
| >cd00704 MDH Malate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.17 E-value=1.9e-05 Score=77.72 Aligned_cols=105 Identities=13% Similarity=0.168 Sum_probs=75.2
Q ss_pred EEEEEcCCCchHHHHHHHHHhcCCc------eEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCH--------
Q 047227 9 LCVVTGGRGFAARHLVEMLIRYDMF------SVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHK-------- 74 (485)
Q Consensus 9 ~iLVtGgtG~iG~~l~~~Ll~~G~~------~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~-------- 74 (485)
||.|+|++|.+|+.++..|...|.. +++++|+..+. + ..+....|+.|.
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~--~---------------~~~g~~~Dl~d~~~~~~~~~ 64 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAM--K---------------ALEGVVMELQDCAFPLLKGV 64 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCcc--C---------------ccceeeeehhhhcccccCCc
Confidence 7999999999999999999886643 48888886521 1 111122222222
Q ss_pred ---HHHHHHhcCCCEEEEcCCC-CCCCCchhhhHHHHHHHHHHHHHHHHhcC-CC-EEEEec
Q 047227 75 ---AQVLQALQGAEVVFHMAAP-NSSINNHKLHHSVNVEGTKNVIDACAELK-VK-RLIYTS 130 (485)
Q Consensus 75 ---~~l~~~~~~~d~Vih~aa~-~~~~~~~~~~~~~nv~~t~~ll~a~~~~~-v~-r~V~~S 130 (485)
....+.++++|+|||+||. .....+....+..|+.-.+.+....++.+ .. .++.+|
T Consensus 65 ~i~~~~~~~~~~aDiVVitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs 126 (323)
T cd00704 65 VITTDPEEAFKDVDVAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVG 126 (323)
T ss_pred EEecChHHHhCCCCEEEEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeC
Confidence 2356788999999999994 34445677889999999999999999984 44 455554
|
Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=98.05 E-value=4.3e-05 Score=75.18 Aligned_cols=106 Identities=21% Similarity=0.165 Sum_probs=75.6
Q ss_pred EEEEEcCCCchHHHHHHHHHhcCCc------eEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHH-------
Q 047227 9 LCVVTGGRGFAARHLVEMLIRYDMF------SVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKA------- 75 (485)
Q Consensus 9 ~iLVtGgtG~iG~~l~~~Ll~~G~~------~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~------- 75 (485)
||.|+|++|.+|++++..|...|.. +++++|+..... ..+-...|+.|..
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~-----------------~a~g~~~Dl~d~~~~~~~~~ 63 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMK-----------------VLEGVVMELMDCAFPLLDGV 63 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCccc-----------------ccceeEeehhcccchhcCce
Confidence 5899999999999999999986643 588998864311 1122233333322
Q ss_pred ----HHHHHhcCCCEEEEcCCCCCC-CCchhhhHHHHHHHHHHHHHHHHhcC-C-CEEEEecC
Q 047227 76 ----QVLQALQGAEVVFHMAAPNSS-INNHKLHHSVNVEGTKNVIDACAELK-V-KRLIYTSS 131 (485)
Q Consensus 76 ----~l~~~~~~~d~Vih~aa~~~~-~~~~~~~~~~nv~~t~~ll~a~~~~~-v-~r~V~~SS 131 (485)
...+.++++|+|||+||.... ..+.......|+.-.+.+.....+.+ . ..++.+|-
T Consensus 64 ~~~~~~~~~~~~aDiVVitAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvsN 126 (324)
T TIGR01758 64 VPTHDPAVAFTDVDVAILVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVGN 126 (324)
T ss_pred eccCChHHHhCCCCEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCC
Confidence 235678899999999994433 34578889999999999999999984 4 34555553
|
This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography |
| >COG0623 FabI Enoyl-[acyl-carrier-protein] | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.00058 Score=61.96 Aligned_cols=221 Identities=12% Similarity=0.100 Sum_probs=136.0
Q ss_pred CCCCCEEEEEcCC--CchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcC-CCeEEEEecCCCHHHHHHH
Q 047227 4 EENERLCVVTGGR--GFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRS-GRAHYVSFDLRHKAQVLQA 80 (485)
Q Consensus 4 ~~~~~~iLVtGgt--G~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~Dl~d~~~l~~~ 80 (485)
..++|++||+|-. --|+..+++.|.++| .++......+... ++ ..+..+. ...-.+.||+.+.+++..+
T Consensus 3 ~L~GK~~lI~Gvan~rSIAwGIAk~l~~~G-AeL~fTy~~e~l~----kr---v~~la~~~~s~~v~~cDV~~d~~i~~~ 74 (259)
T COG0623 3 LLEGKRILIMGVANNRSIAWGIAKALAEQG-AELAFTYQGERLE----KR---VEELAEELGSDLVLPCDVTNDESIDAL 74 (259)
T ss_pred ccCCceEEEEEecccccHHHHHHHHHHHcC-CEEEEEeccHHHH----HH---HHHHHhhccCCeEEecCCCCHHHHHHH
Confidence 3568999999966 789999999999999 6877766554210 11 1111111 2345689999999988888
Q ss_pred hc-------CCCEEEEcCCCC-----------CCCCchhhhHHHHHHHHHHHHHHHHhc--CCCEEEEecCccccccCCC
Q 047227 81 LQ-------GAEVVFHMAAPN-----------SSINNHKLHHSVNVEGTKNVIDACAEL--KVKRLIYTSSPSVVFDGVH 140 (485)
Q Consensus 81 ~~-------~~d~Vih~aa~~-----------~~~~~~~~~~~~nv~~t~~ll~a~~~~--~v~r~V~~SS~~vy~~~~~ 140 (485)
|+ +.|.++|..|.. .+.+++...+++.......+..+|+.. +-..+|-.| |...
T Consensus 75 f~~i~~~~g~lD~lVHsIaFa~k~el~G~~~dtsre~f~~a~~IS~YS~~~lak~a~~lM~~ggSiltLt----Ylgs-- 148 (259)
T COG0623 75 FATIKKKWGKLDGLVHSIAFAPKEELKGDYLDTSREGFLIAMDISAYSFTALAKAARPLMNNGGSILTLT----YLGS-- 148 (259)
T ss_pred HHHHHHhhCcccEEEEEeccCChHHhCCcccccCHHHHHhHhhhhHhhHHHHHHHHHHhcCCCCcEEEEE----eccc--
Confidence 75 389999999921 123344455566666666666666653 112333222 2111
Q ss_pred CcCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCccc---CCCCCChHHHHHHHHcCCCeEEe
Q 047227 141 GIINGNEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFG---PGDRLLVPSLVAAARAGKSKFII 214 (485)
Q Consensus 141 ~~~~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G---p~~~~~~~~~~~~~~~g~~~~~~ 214 (485)
+.. ....+.-+..|+.-|.-++.++.. .|+++..+-.|.|=- .+- ..+..++......-
T Consensus 149 -----~r~----vPnYNvMGvAKAaLEasvRyLA~dlG~~gIRVNaISAGPIrTLAasgI-~~f~~~l~~~e~~a----- 213 (259)
T COG0623 149 -----ERV----VPNYNVMGVAKAALEASVRYLAADLGKEGIRVNAISAGPIRTLAASGI-GDFRKMLKENEANA----- 213 (259)
T ss_pred -----eee----cCCCchhHHHHHHHHHHHHHHHHHhCccCeEEeeecccchHHHHhhcc-ccHHHHHHHHHhhC-----
Confidence 111 123457899999999988877643 457666665444311 110 12344444433332
Q ss_pred cCCCceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCCCc
Q 047227 215 GDGNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMESI 263 (485)
Q Consensus 215 g~g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~~ 263 (485)
+.+.-+..+||...-..++..+.++ ..|++.+|.++-.+
T Consensus 214 ----Pl~r~vt~eeVG~tA~fLlSdLssg------iTGei~yVD~G~~i 252 (259)
T COG0623 214 ----PLRRNVTIEEVGNTAAFLLSDLSSG------ITGEIIYVDSGYHI 252 (259)
T ss_pred ----CccCCCCHHHhhhhHHHHhcchhcc------cccceEEEcCCcee
Confidence 2234455899999888887777776 88999888887543
|
|
| >PF13950 Epimerase_Csub: UDP-glucose 4-epimerase C-term subunit; PDB: 1EK5_A 1I3K_B 1I3M_B 1HZJ_A 1EK6_A 1I3N_A 1I3L_A 2CNB_B 1GY8_D 1NAI_A | Back alignment and domain information |
|---|
Probab=98.00 E-value=7e-06 Score=59.44 Aligned_cols=37 Identities=27% Similarity=0.292 Sum_probs=26.7
Q ss_pred ceeeehhhHHhhcCCCCCCChHHHHHHHHHHHHHhHh
Q 047227 325 SRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSYSHLRA 361 (485)
Q Consensus 325 ~~~~d~~ka~~~lG~~p~~~l~e~i~~~~~~~~~~~~ 361 (485)
....|++||+++|||+|+.+++|+++++++|+++++.
T Consensus 24 ~~~Ad~~kA~~~LgW~p~~~L~~~i~~~w~W~~~np~ 60 (62)
T PF13950_consen 24 HLVADISKAREELGWKPKYSLEDMIRDAWNWQKKNPN 60 (62)
T ss_dssp EE-B--HHHHHHC----SSSHHHHHHHHHHHHHHSTT
T ss_pred hhhCCHHHHHHHhCCCcCCCHHHHHHHHHHHHHHCcC
Confidence 3467999999999999999999999999999988654
|
... |
| >KOG2733 consensus Uncharacterized membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.96 E-value=1.6e-05 Score=76.18 Aligned_cols=105 Identities=21% Similarity=0.258 Sum_probs=75.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHh----cCCceEEEeecCCccccCCccchhhhhhhhc--CCCeEEEEecCCCHHHHHHHh
Q 047227 8 RLCVVTGGRGFAARHLVEMLIR----YDMFSVRIADLSDSIALEPHEEQGILGEALR--SGRAHYVSFDLRHKAQVLQAL 81 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~----~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~Dl~d~~~l~~~~ 81 (485)
-.++|.||+||.|.++++.+++ .| ...-+..|+..+-.+-.+. ...... -+....+.+|..|++++.+..
T Consensus 6 yDvVIyGASGfTG~yivee~v~~~~~~~-~slavAGRn~~KL~~vL~~---~~~k~~~~ls~~~i~i~D~~n~~Sl~ema 81 (423)
T KOG2733|consen 6 YDVVIYGASGFTGKYIVEEAVSSQVFEG-LSLAVAGRNEKKLQEVLEK---VGEKTGTDLSSSVILIADSANEASLDEMA 81 (423)
T ss_pred eeEEEEccccccceeeHHHHhhhhcccC-ceEEEecCCHHHHHHHHHH---HhhccCCCcccceEEEecCCCHHHHHHHH
Confidence 4689999999999999999999 55 4777777775432111111 000000 122338889999999999999
Q ss_pred cCCCEEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEec
Q 047227 82 QGAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTS 130 (485)
Q Consensus 82 ~~~d~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~S 130 (485)
+.+.+|+|++||.....+ +++.+|.+.|. +.|=+|
T Consensus 82 k~~~vivN~vGPyR~hGE-------------~VVkacienG~-~~vDIS 116 (423)
T KOG2733|consen 82 KQARVIVNCVGPYRFHGE-------------PVVKACIENGT-HHVDIS 116 (423)
T ss_pred hhhEEEEeccccceecCc-------------HHHHHHHHcCC-ceeccC
Confidence 999999999997766555 58999999996 455444
|
|
| >PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis [] | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00017 Score=62.11 Aligned_cols=115 Identities=16% Similarity=0.129 Sum_probs=76.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCC-ceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCCCE
Q 047227 8 RLCVVTGGRGFAARHLVEMLIRYDM-FSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGAEV 86 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~~G~-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~d~ 86 (485)
|||.|+|++|.+|++++..|...+. .+++++|+..........+ +.+............. .+ .+.++++|+
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~D---l~~~~~~~~~~~~i~~-~~----~~~~~~aDi 72 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALD---LSHASAPLPSPVRITS-GD----YEALKDADI 72 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHH---HHHHHHGSTEEEEEEE-SS----GGGGTTESE
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehh---hhhhhhhccccccccc-cc----ccccccccE
Confidence 6899999999999999999999864 3799999875421111111 1111112222222211 22 345678999
Q ss_pred EEEcCC-CCCCCCchhhhHHHHHHHHHHHHHHHHhcCCC-EEEEec
Q 047227 87 VFHMAA-PNSSINNHKLHHSVNVEGTKNVIDACAELKVK-RLIYTS 130 (485)
Q Consensus 87 Vih~aa-~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~-r~V~~S 130 (485)
||-+++ +..........++.|+.-.+.+.+...+.+.+ .++.+|
T Consensus 73 vvitag~~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~p~~~vivvt 118 (141)
T PF00056_consen 73 VVITAGVPRKPGMSRLDLLEANAKIVKEIAKKIAKYAPDAIVIVVT 118 (141)
T ss_dssp EEETTSTSSSTTSSHHHHHHHHHHHHHHHHHHHHHHSTTSEEEE-S
T ss_pred EEEeccccccccccHHHHHHHhHhHHHHHHHHHHHhCCccEEEEeC
Confidence 999999 34444567788899999999999999999854 444444
|
L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C .... |
| >cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase | Back alignment and domain information |
|---|
Probab=97.81 E-value=8.9e-05 Score=67.65 Aligned_cols=81 Identities=21% Similarity=0.175 Sum_probs=60.1
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCC
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGA 84 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 84 (485)
.++++++|+||+|.+|+.+++.|.+.| .+|++++|....... +........+.+...+|..|.+++.++++++
T Consensus 26 l~~~~vlVlGgtG~iG~~~a~~l~~~g-~~V~l~~R~~~~~~~------l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (194)
T cd01078 26 LKGKTAVVLGGTGPVGQRAAVLLAREG-ARVVLVGRDLERAQK------AADSLRARFGEGVGAVETSDDAARAAAIKGA 98 (194)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEcCCHHHHHH------HHHHHHhhcCCcEEEeeCCCHHHHHHHHhcC
Confidence 356899999999999999999999999 599998876432110 1111111124556677888999999999999
Q ss_pred CEEEEcCC
Q 047227 85 EVVFHMAA 92 (485)
Q Consensus 85 d~Vih~aa 92 (485)
|+||+..+
T Consensus 99 diVi~at~ 106 (194)
T cd01078 99 DVVFAAGA 106 (194)
T ss_pred CEEEECCC
Confidence 99999765
|
Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo |
| >PRK13656 trans-2-enoyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00076 Score=66.99 Aligned_cols=86 Identities=7% Similarity=-0.041 Sum_probs=57.4
Q ss_pred CCCEEEEEcCCCchHHH--HHHHHHhcCCceEEEeecCCccccCCc-----cchhhhhhhhc--CCCeEEEEecCCCHHH
Q 047227 6 NERLCVVTGGRGFAARH--LVEMLIRYDMFSVRIADLSDSIALEPH-----EEQGILGEALR--SGRAHYVSFDLRHKAQ 76 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~--l~~~Ll~~G~~~V~~~~r~~~~~~~~~-----~~~~~~~~~~~--~~~v~~~~~Dl~d~~~ 76 (485)
.+|++||||+++-+|.+ +++.| +.| ..|.++++......... .....+..... ...+..+.+|+.+.++
T Consensus 40 ggK~aLVTGaSsGIGlA~~IA~al-~~G-A~Vi~v~~~~~~~~~~~~tagwy~~~a~~~~a~~~G~~a~~i~~DVss~E~ 117 (398)
T PRK13656 40 GPKKVLVIGASSGYGLASRIAAAF-GAG-ADTLGVFFEKPGTEKKTGTAGWYNSAAFDKFAKAAGLYAKSINGDAFSDEI 117 (398)
T ss_pred CCCEEEEECCCchHhHHHHHHHHH-HcC-CeEEEEecCcchhhhcccccccchHHHHHHHHHhcCCceEEEEcCCCCHHH
Confidence 46899999999999999 89999 999 67777775321111000 00000111122 2346678999999988
Q ss_pred HHHHhc-------CCCEEEEcCCC
Q 047227 77 VLQALQ-------GAEVVFHMAAP 93 (485)
Q Consensus 77 l~~~~~-------~~d~Vih~aa~ 93 (485)
+.++++ +.|.+||.+|.
T Consensus 118 v~~lie~I~e~~G~IDiLVnSaA~ 141 (398)
T PRK13656 118 KQKVIELIKQDLGQVDLVVYSLAS 141 (398)
T ss_pred HHHHHHHHHHhcCCCCEEEECCcc
Confidence 777664 48999999993
|
|
| >KOG1478 consensus 3-keto sterol reductase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00035 Score=64.10 Aligned_cols=177 Identities=18% Similarity=0.146 Sum_probs=111.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCc----eEEEeecCCccccCCccchhhhhhhhc--CCCeEEEEecCCCHHHHHHH
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMF----SVRIADLSDSIALEPHEEQGILGEALR--SGRAHYVSFDLRHKAQVLQA 80 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~----~V~~~~r~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~Dl~d~~~l~~~ 80 (485)
.|.+||||++.-+|-.+|..|++.... ++++..|..++..+ -.+.+..... .-+++++..|+.+-.++.++
T Consensus 3 RKvalITGanSglGl~i~~RLl~~~De~~~ltl~ltcR~~~kae~---vc~~lk~f~p~~~i~~~yvlvD~sNm~Sv~~A 79 (341)
T KOG1478|consen 3 RKVALITGANSGLGLAICKRLLAEDDENVRLTLCLTCRNMSKAEA---VCAALKAFHPKSTIEVTYVLVDVSNMQSVFRA 79 (341)
T ss_pred ceEEEEecCCCcccHHHHHHHHhccCCceeEEEEEEeCChhHHHH---HHHHHHHhCCCceeEEEEEEEehhhHHHHHHH
Confidence 467899999999999999999987533 45566665442211 1111222211 34688999999997666555
Q ss_pred h-------cCCCEEEEcCCCCC----------------------------------CCCchhhhHHHHHHHHHHHHHHHH
Q 047227 81 L-------QGAEVVFHMAAPNS----------------------------------SINNHKLHHSVNVEGTKNVIDACA 119 (485)
Q Consensus 81 ~-------~~~d~Vih~aa~~~----------------------------------~~~~~~~~~~~nv~~t~~ll~a~~ 119 (485)
- +..|.|+-.||... +.++-.+.++.||-|..-++....
T Consensus 80 ~~di~~rf~~ld~iylNAg~~~~~gi~w~~avf~~fsnpv~amt~pt~~~~t~G~is~D~lg~iFetnVFGhfyli~~l~ 159 (341)
T KOG1478|consen 80 SKDIKQRFQRLDYIYLNAGIMPNPGINWKAAVFGLFSNPVIAMTSPTEGLLTQGKISADGLGEIFETNVFGHFYLIRELE 159 (341)
T ss_pred HHHHHHHhhhccEEEEccccCCCCcccHHHHHHHHhhchhHHhcCchhhhhhcceecccchhhHhhhcccchhhhHhhhh
Confidence 3 45799999998211 123345688999999888776655
Q ss_pred hc----CCCEEEEecCccccccCCCCcCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccC
Q 047227 120 EL----KVKRLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGP 192 (485)
Q Consensus 120 ~~----~v~r~V~~SS~~vy~~~~~~~~~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp 192 (485)
.. ....+|.+||..+= .....-+|-. ..+...+|..||...+-+-....+. .|+.-.++.||.....
T Consensus 160 pll~~~~~~~lvwtSS~~a~---kk~lsleD~q---~~kg~~pY~sSKrl~DlLh~A~~~~~~~~g~~qyvv~pg~~tt~ 233 (341)
T KOG1478|consen 160 PLLCHSDNPQLVWTSSRMAR---KKNLSLEDFQ---HSKGKEPYSSSKRLTDLLHVALNRNFKPLGINQYVVQPGIFTTN 233 (341)
T ss_pred hHhhcCCCCeEEEEeecccc---cccCCHHHHh---hhcCCCCcchhHHHHHHHHHHHhccccccchhhhcccCceeecc
Confidence 43 23489999996541 1111001111 2356678999999998877666543 2456666777765443
|
|
| >PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00016 Score=73.16 Aligned_cols=72 Identities=18% Similarity=0.200 Sum_probs=55.9
Q ss_pred CCCCEEEEEcC----------------CCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEE
Q 047227 5 ENERLCVVTGG----------------RGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVS 68 (485)
Q Consensus 5 ~~~~~iLVtGg----------------tG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 68 (485)
..++++||||| +|.+|.++++.|.++| .+|+++++... ... ..+ ...
T Consensus 186 l~gk~vlITgG~T~E~ID~VR~isN~SSG~~G~aiA~~l~~~G-a~V~~v~~~~~--~~~------------~~~--~~~ 248 (399)
T PRK05579 186 LAGKRVLITAGPTREPIDPVRYITNRSSGKMGYALARAAARRG-ADVTLVSGPVN--LPT------------PAG--VKR 248 (399)
T ss_pred cCCCEEEEeCCCccccccceeeeccCCcchHHHHHHHHHHHCC-CEEEEeCCCcc--ccC------------CCC--cEE
Confidence 46789999999 8999999999999999 69999876542 100 112 345
Q ss_pred ecCCCHHHHHHHhc----CCCEEEEcCCC
Q 047227 69 FDLRHKAQVLQALQ----GAEVVFHMAAP 93 (485)
Q Consensus 69 ~Dl~d~~~l~~~~~----~~d~Vih~aa~ 93 (485)
.|+++.+++.++++ ++|++||+||.
T Consensus 249 ~dv~~~~~~~~~v~~~~~~~DilI~~Aav 277 (399)
T PRK05579 249 IDVESAQEMLDAVLAALPQADIFIMAAAV 277 (399)
T ss_pred EccCCHHHHHHHHHHhcCCCCEEEEcccc
Confidence 79999888777663 58999999993
|
|
| >PRK14982 acyl-ACP reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.66 E-value=7.5e-05 Score=73.36 Aligned_cols=73 Identities=15% Similarity=0.103 Sum_probs=50.8
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhc-CCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcC
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRY-DMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQG 83 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~-G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~ 83 (485)
..+++|+||||+|+||+.++++|.++ |...+.+++|....... +.. ++..+|+. .+.+++.+
T Consensus 153 l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~-------La~-------el~~~~i~---~l~~~l~~ 215 (340)
T PRK14982 153 LSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQE-------LQA-------ELGGGKIL---SLEEALPE 215 (340)
T ss_pred cCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHH-------HHH-------HhccccHH---hHHHHHcc
Confidence 45689999999999999999999865 53588888876431111 111 11123433 36678889
Q ss_pred CCEEEEcCCCC
Q 047227 84 AEVVFHMAAPN 94 (485)
Q Consensus 84 ~d~Vih~aa~~ 94 (485)
+|+|||+++..
T Consensus 216 aDiVv~~ts~~ 226 (340)
T PRK14982 216 ADIVVWVASMP 226 (340)
T ss_pred CCEEEECCcCC
Confidence 99999999843
|
|
| >cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0014 Score=64.22 Aligned_cols=118 Identities=14% Similarity=0.174 Sum_probs=75.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCc-eEEEeecCCccccCCccchhhhhhhhcCC--CeEEEEecCCCHHHHHHHhcCC
Q 047227 8 RLCVVTGGRGFAARHLVEMLIRYDMF-SVRIADLSDSIALEPHEEQGILGEALRSG--RAHYVSFDLRHKAQVLQALQGA 84 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~~G~~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~Dl~d~~~l~~~~~~~ 84 (485)
|+|.|+|+||++|..++..|...|+. +|+++|+.............+ .+.+... ..+ +.+. .| . +.++++
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl-~d~~~~~~~~~~-i~~~-~d---~-~~l~~a 73 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDI-YDALAAAGIDAE-IKIS-SD---L-SDVAGS 73 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchh-hhchhccCCCcE-EEEC-CC---H-HHhCCC
Confidence 68999999999999999999999864 599999843211111111111 1111111 112 1111 23 2 248999
Q ss_pred CEEEEcCCCCC-CCCchhhhHHHHHHHHHHHHHHHHhcCCC-EEEEecCc
Q 047227 85 EVVFHMAAPNS-SINNHKLHHSVNVEGTKNVIDACAELKVK-RLIYTSSP 132 (485)
Q Consensus 85 d~Vih~aa~~~-~~~~~~~~~~~nv~~t~~ll~a~~~~~v~-r~V~~SS~ 132 (485)
|+||-+++... ...+.....+.|+.-.+.+.+...+.+.+ .+|.++++
T Consensus 74 DiViitag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~~~~~viv~~np 123 (309)
T cd05294 74 DIVIITAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFAPDTKILVVTNP 123 (309)
T ss_pred CEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCc
Confidence 99999999443 33344677899999999999998887643 56666654
|
The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox |
| >PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00037 Score=70.06 Aligned_cols=102 Identities=15% Similarity=0.204 Sum_probs=63.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHH-HhcCC
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQ-ALQGA 84 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~-~~~~~ 84 (485)
++|+|.|.||||++|..+++.|.++.+.+|+.+.+.++....... ........|..+.++++. .++++
T Consensus 37 ~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~i~~-----------~~~~l~~~~~~~~~~~~~~~~~~~ 105 (381)
T PLN02968 37 EKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQSFGS-----------VFPHLITQDLPNLVAVKDADFSDV 105 (381)
T ss_pred cccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCCchh-----------hCccccCccccceecCCHHHhcCC
Confidence 457999999999999999999999965788888765332111000 011112233332222222 25789
Q ss_pred CEEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCcccc
Q 047227 85 EVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVV 135 (485)
Q Consensus 85 d~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy 135 (485)
|+||-+.+. ..+.+++.++ +.| +++|-.|+..-+
T Consensus 106 DvVf~Alp~---------------~~s~~i~~~~-~~g-~~VIDlSs~fRl 139 (381)
T PLN02968 106 DAVFCCLPH---------------GTTQEIIKAL-PKD-LKIVDLSADFRL 139 (381)
T ss_pred CEEEEcCCH---------------HHHHHHHHHH-hCC-CEEEEcCchhcc
Confidence 999986651 1445666666 345 489999987654
|
|
| >COG3268 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.00076 Score=64.44 Aligned_cols=93 Identities=20% Similarity=0.262 Sum_probs=63.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCCCE
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGAEV 86 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~d~ 86 (485)
...++|-|++||.|.-++++|..+|+ +-.+..|+..+-.. +... -+.+.-.-++.+++.+++.+.++++
T Consensus 6 e~d~iiYGAtGy~G~lvae~l~~~g~-~~aLAgRs~~kl~~-------l~~~---LG~~~~~~p~~~p~~~~~~~~~~~V 74 (382)
T COG3268 6 EYDIIIYGATGYAGGLVAEYLAREGL-TAALAGRSSAKLDA-------LRAS---LGPEAAVFPLGVPAALEAMASRTQV 74 (382)
T ss_pred ceeEEEEccccchhHHHHHHHHHcCC-chhhccCCHHHHHH-------HHHh---cCccccccCCCCHHHHHHHHhcceE
Confidence 35799999999999999999999995 55555565432110 1111 1222333344558899999999999
Q ss_pred EEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCC
Q 047227 87 VFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKV 123 (485)
Q Consensus 87 Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v 123 (485)
|+||+||...... -++++|...|.
T Consensus 75 VlncvGPyt~~g~-------------plv~aC~~~GT 98 (382)
T COG3268 75 VLNCVGPYTRYGE-------------PLVAACAAAGT 98 (382)
T ss_pred EEecccccccccc-------------HHHHHHHHhCC
Confidence 9999997665444 36667776665
|
|
| >cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0041 Score=60.70 Aligned_cols=116 Identities=18% Similarity=0.165 Sum_probs=77.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCc-eEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCCCE
Q 047227 8 RLCVVTGGRGFAARHLVEMLIRYDMF-SVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGAEV 86 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~~G~~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~d~ 86 (485)
|||.|+|++|.+|++++..|..+|.. ++.++|.... . .+... +.+.. ......... .+ +++.+.++++|+
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~~a--~--g~alD-L~~~~--~~~~i~~~~-~~-~~~y~~~~daDi 71 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIVNT--P--GVAAD-LSHIN--TPAKVTGYL-GP-EELKKALKGADV 71 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecCcc--c--eeehH-hHhCC--CcceEEEec-CC-CchHHhcCCCCE
Confidence 58999999999999999999888753 7888887611 1 11100 11111 111222110 11 235677899999
Q ss_pred EEEcCCC-CCCCCchhhhHHHHHHHHHHHHHHHHhcCCC-EEEEecCc
Q 047227 87 VFHMAAP-NSSINNHKLHHSVNVEGTKNVIDACAELKVK-RLIYTSSP 132 (485)
Q Consensus 87 Vih~aa~-~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~-r~V~~SS~ 132 (485)
||-+||. .....+.....+.|+.-.+.+.+..++.+.+ .++.+|-+
T Consensus 72 vvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~p~a~vivvtNP 119 (310)
T cd01337 72 VVIPAGVPRKPGMTRDDLFNINAGIVRDLATAVAKACPKALILIISNP 119 (310)
T ss_pred EEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCc
Confidence 9999994 3444567788999999999999999998854 45555543
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >TIGR01759 MalateDH-SF1 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0047 Score=60.77 Aligned_cols=117 Identities=12% Similarity=0.022 Sum_probs=75.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCc------eEEEeecCCccccCCccchhhhhhh-hcCCCeEEEEecCCCHHHHHH
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMF------SVRIADLSDSIALEPHEEQGILGEA-LRSGRAHYVSFDLRHKAQVLQ 79 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~------~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~l~~ 79 (485)
..||.|+|++|.+|++++..|+..|.. ++.++|..............+.... ....+++ +.. ...+
T Consensus 3 p~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~-i~~------~~~~ 75 (323)
T TIGR01759 3 PVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVV-ATT------DPEE 75 (323)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcE-Eec------ChHH
Confidence 469999999999999999999988743 5888887542111111110001000 0001121 111 2346
Q ss_pred HhcCCCEEEEcCCC-CCCCCchhhhHHHHHHHHHHHHHHHHhcCC-CE-EEEec
Q 047227 80 ALQGAEVVFHMAAP-NSSINNHKLHHSVNVEGTKNVIDACAELKV-KR-LIYTS 130 (485)
Q Consensus 80 ~~~~~d~Vih~aa~-~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v-~r-~V~~S 130 (485)
.++++|+||-.||. .....+....+..|+.-.+.+...+.+.+. +- ++.+|
T Consensus 76 ~~~daDvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvs 129 (323)
T TIGR01759 76 AFKDVDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVG 129 (323)
T ss_pred HhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeC
Confidence 67899999999994 334457778899999999999999999875 44 44444
|
This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms. |
| >PRK05442 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0064 Score=59.90 Aligned_cols=118 Identities=14% Similarity=0.018 Sum_probs=75.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCc------eEEEeecCCccccCCccchhhhhhh-hcCCCeEEEEecCCCHHHHHH
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMF------SVRIADLSDSIALEPHEEQGILGEA-LRSGRAHYVSFDLRHKAQVLQ 79 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~------~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~l~~ 79 (485)
++||.|+|++|.+|+.++..|...|.. ++.++|..............+.... ....++.. .. ...+
T Consensus 4 ~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i-~~------~~y~ 76 (326)
T PRK05442 4 PVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVI-TD------DPNV 76 (326)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEE-ec------ChHH
Confidence 379999999999999999999876643 5888887543111111111111110 00112222 11 2246
Q ss_pred HhcCCCEEEEcCCC-CCCCCchhhhHHHHHHHHHHHHHHHHhcC--CCEEEEecC
Q 047227 80 ALQGAEVVFHMAAP-NSSINNHKLHHSVNVEGTKNVIDACAELK--VKRLIYTSS 131 (485)
Q Consensus 80 ~~~~~d~Vih~aa~-~~~~~~~~~~~~~nv~~t~~ll~a~~~~~--v~r~V~~SS 131 (485)
.++++|+||-+||. .....+....+..|+.-.+.+.+...++. -..++.+|-
T Consensus 77 ~~~daDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsN 131 (326)
T PRK05442 77 AFKDADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVGN 131 (326)
T ss_pred HhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCC
Confidence 67899999999993 33445777889999999999999999954 335665554
|
|
| >COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0027 Score=59.26 Aligned_cols=73 Identities=19% Similarity=0.192 Sum_probs=58.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhc-CCCeEEEEecCCCHHHHHHH-hcCCC
Q 047227 8 RLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALR-SGRAHYVSFDLRHKAQVLQA-LQGAE 85 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~Dl~d~~~l~~~-~~~~d 85 (485)
|+++|.| .|-+|+.+++.|.+.|| +|.++++.+... ..... ......+.+|-+|++.+.++ ++++|
T Consensus 1 m~iiIiG-~G~vG~~va~~L~~~g~-~Vv~Id~d~~~~----------~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD 68 (225)
T COG0569 1 MKIIIIG-AGRVGRSVARELSEEGH-NVVLIDRDEERV----------EEFLADELDTHVVIGDATDEDVLEEAGIDDAD 68 (225)
T ss_pred CEEEEEC-CcHHHHHHHHHHHhCCC-ceEEEEcCHHHH----------HHHhhhhcceEEEEecCCCHHHHHhcCCCcCC
Confidence 5788887 89999999999999994 888998876522 11111 25678899999999999998 78899
Q ss_pred EEEEcCC
Q 047227 86 VVFHMAA 92 (485)
Q Consensus 86 ~Vih~aa 92 (485)
+|+=..+
T Consensus 69 ~vva~t~ 75 (225)
T COG0569 69 AVVAATG 75 (225)
T ss_pred EEEEeeC
Confidence 9996654
|
|
| >PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0011 Score=74.28 Aligned_cols=78 Identities=23% Similarity=0.245 Sum_probs=58.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCce-------------EEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCC
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFS-------------VRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLR 72 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~-------------V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~ 72 (485)
.+++|+|.| +|++|+.+++.|.+.+... |.+.|+....... +.. ..++++.+..|+.
T Consensus 568 ~~~rIlVLG-AG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~-------la~--~~~~~~~v~lDv~ 637 (1042)
T PLN02819 568 KSQNVLILG-AGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKE-------TVE--GIENAEAVQLDVS 637 (1042)
T ss_pred cCCcEEEEC-CCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHH-------HHH--hcCCCceEEeecC
Confidence 467999999 5999999999998864333 7777665431100 111 1236788999999
Q ss_pred CHHHHHHHhcCCCEEEEcCCC
Q 047227 73 HKAQVLQALQGAEVVFHMAAP 93 (485)
Q Consensus 73 d~~~l~~~~~~~d~Vih~aa~ 93 (485)
|.+++.++++++|+||.+..+
T Consensus 638 D~e~L~~~v~~~DaVIsalP~ 658 (1042)
T PLN02819 638 DSESLLKYVSQVDVVISLLPA 658 (1042)
T ss_pred CHHHHHHhhcCCCEEEECCCc
Confidence 999999999999999999873
|
|
| >PRK14874 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0035 Score=62.21 Aligned_cols=94 Identities=19% Similarity=0.191 Sum_probs=57.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCc--eEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCC
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMF--SVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGA 84 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 84 (485)
+|+|+|.|+||++|..+++.|.++||. +++.+.+.+..... +.-.+.+....|+.+. .++++
T Consensus 1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~-----------l~~~g~~i~v~d~~~~-----~~~~v 64 (334)
T PRK14874 1 GYNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKE-----------LSFKGKELKVEDLTTF-----DFSGV 64 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCe-----------eeeCCceeEEeeCCHH-----HHcCC
Confidence 479999999999999999999998764 45666554321111 0011234444566432 34689
Q ss_pred CEEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCc
Q 047227 85 EVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSP 132 (485)
Q Consensus 85 d~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~ 132 (485)
|+||-+.+.. .++.+.....+.|+ ++|=.|+.
T Consensus 65 DvVf~A~g~g---------------~s~~~~~~~~~~G~-~VIDlS~~ 96 (334)
T PRK14874 65 DIALFSAGGS---------------VSKKYAPKAAAAGA-VVIDNSSA 96 (334)
T ss_pred CEEEECCChH---------------HHHHHHHHHHhCCC-EEEECCch
Confidence 9999777521 22345555556676 56655653
|
|
| >TIGR02114 coaB_strep phosphopantothenate--cysteine ligase, streptococcal | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.001 Score=62.10 Aligned_cols=62 Identities=15% Similarity=0.238 Sum_probs=43.0
Q ss_pred cCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHh-------cCCCE
Q 047227 14 GGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQAL-------QGAEV 86 (485)
Q Consensus 14 GgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~-------~~~d~ 86 (485)
.++|.+|.++++.|.++| ++|+++++... .. .. ....+|+.+.++..+++ .++|+
T Consensus 22 ~SSGgIG~AIA~~la~~G-a~Vvlv~~~~~--l~-------------~~--~~~~~Dv~d~~s~~~l~~~v~~~~g~iDi 83 (227)
T TIGR02114 22 HSTGHLGKIITETFLSAG-HEVTLVTTKRA--LK-------------PE--PHPNLSIREIETTKDLLITLKELVQEHDI 83 (227)
T ss_pred CcccHHHHHHHHHHHHCC-CEEEEEcChhh--cc-------------cc--cCCcceeecHHHHHHHHHHHHHHcCCCCE
Confidence 347999999999999999 68888765211 00 00 01346888876665543 35899
Q ss_pred EEEcCCC
Q 047227 87 VFHMAAP 93 (485)
Q Consensus 87 Vih~aa~ 93 (485)
+||+||.
T Consensus 84 LVnnAgv 90 (227)
T TIGR02114 84 LIHSMAV 90 (227)
T ss_pred EEECCEe
Confidence 9999994
|
In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the C-terminal region of TIGR00521, corresponding to phosphopantothenate--cysteine ligase activity. |
| >PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0055 Score=60.82 Aligned_cols=114 Identities=19% Similarity=0.195 Sum_probs=74.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccc------------------hhhhhhhhcCCCeEEE
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEE------------------QGILGEALRSGRAHYV 67 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~------------------~~~~~~~~~~~~v~~~ 67 (485)
...+|+|.| .|.+|++++..|...|.-+++++|...-...+...+ ...+......-.++.+
T Consensus 23 ~~~~VlVvG-~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~inp~v~v~~~ 101 (339)
T PRK07688 23 REKHVLIIG-AGALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINSDVRVEAI 101 (339)
T ss_pred cCCcEEEEC-CCHHHHHHHHHHHHcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHCCCcEEEEE
Confidence 356899998 599999999999999966899999864211111000 0011111112235555
Q ss_pred EecCCCHHHHHHHhcCCCEEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCccccc
Q 047227 68 SFDLRHKAQVLQALQGAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVVF 136 (485)
Q Consensus 68 ~~Dl~d~~~l~~~~~~~d~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy~ 136 (485)
..+++ .+.+.++++++|+||.+.. ++ ..-..+-++|.+.++ .+|+.|+.+.||
T Consensus 102 ~~~~~-~~~~~~~~~~~DlVid~~D------n~--------~~r~~ln~~~~~~~i-P~i~~~~~g~~G 154 (339)
T PRK07688 102 VQDVT-AEELEELVTGVDLIIDATD------NF--------ETRFIVNDAAQKYGI-PWIYGACVGSYG 154 (339)
T ss_pred eccCC-HHHHHHHHcCCCEEEEcCC------CH--------HHHHHHHHHHHHhCC-CEEEEeeeeeee
Confidence 66765 4557788899999998753 22 222357788998886 588988877665
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0031 Score=53.11 Aligned_cols=96 Identities=16% Similarity=0.189 Sum_probs=70.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCCC
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGAE 85 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~d 85 (485)
+++++++.| .| .|.+++..|.+.| ++|+++|.++.. .+..+...++.+.+|+.+++ .++-+++|
T Consensus 16 ~~~kileIG-~G-fG~~vA~~L~~~G-~~ViaIDi~~~a-----------V~~a~~~~~~~v~dDlf~p~--~~~y~~a~ 79 (134)
T PRK04148 16 KNKKIVELG-IG-FYFKVAKKLKESG-FDVIVIDINEKA-----------VEKAKKLGLNAFVDDLFNPN--LEIYKNAK 79 (134)
T ss_pred cCCEEEEEE-ec-CCHHHHHHHHHCC-CEEEEEECCHHH-----------HHHHHHhCCeEEECcCCCCC--HHHHhcCC
Confidence 457899998 77 8999999999999 599999987652 11122346889999999875 34557899
Q ss_pred EEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecC
Q 047227 86 VVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSS 131 (485)
Q Consensus 86 ~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS 131 (485)
.|+-+= .|.+. ...+++.|++.++.-+|..=|
T Consensus 80 liysir-------pp~el-------~~~~~~la~~~~~~~~i~~l~ 111 (134)
T PRK04148 80 LIYSIR-------PPRDL-------QPFILELAKKINVPLIIKPLS 111 (134)
T ss_pred EEEEeC-------CCHHH-------HHHHHHHHHHcCCCEEEEcCC
Confidence 998542 23333 347999999999876665443
|
|
| >cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0069 Score=55.30 Aligned_cols=114 Identities=17% Similarity=0.149 Sum_probs=71.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccch------------------hhhhhhhcCCCeEEEE
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQ------------------GILGEALRSGRAHYVS 68 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~------------------~~~~~~~~~~~v~~~~ 68 (485)
+.+|+|.|..| +|+++++.|...|-.+++++|...-...+...+. ..+......-+++.+.
T Consensus 19 ~s~VlviG~gg-lGsevak~L~~~GVg~i~lvD~d~ve~snl~rq~~~~~~~~~iG~~Ka~~~~~~L~~lNp~v~i~~~~ 97 (198)
T cd01485 19 SAKVLIIGAGA-LGAEIAKNLVLAGIDSITIVDHRLVSTEDLGSNFFLDAEVSNSGMNRAAASYEFLQELNPNVKLSIVE 97 (198)
T ss_pred hCcEEEECCCH-HHHHHHHHHHHcCCCEEEEEECCcCChhcCcccEecccchhhcCchHHHHHHHHHHHHCCCCEEEEEe
Confidence 46899999777 9999999999999778999987632211111110 0011111122344444
Q ss_pred ecCCC-HHHHHHHhcCCCEEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCccccc
Q 047227 69 FDLRH-KAQVLQALQGAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVVF 136 (485)
Q Consensus 69 ~Dl~d-~~~l~~~~~~~d~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy~ 136 (485)
.++.+ .+...+.++++|+||.+.. + ......+-+.|++.++ .+|+.++.+.||
T Consensus 98 ~~~~~~~~~~~~~~~~~dvVi~~~d------~--------~~~~~~ln~~c~~~~i-p~i~~~~~G~~G 151 (198)
T cd01485 98 EDSLSNDSNIEEYLQKFTLVIATEE------N--------YERTAKVNDVCRKHHI-PFISCATYGLIG 151 (198)
T ss_pred cccccchhhHHHHHhCCCEEEECCC------C--------HHHHHHHHHHHHHcCC-CEEEEEeecCEE
Confidence 45542 3456677889999996632 1 2222356788999986 688888876664
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol |
| >PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.012 Score=50.14 Aligned_cols=113 Identities=11% Similarity=0.134 Sum_probs=72.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccc------------hhhhhhhh----cCCCeEEEEec
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEE------------QGILGEAL----RSGRAHYVSFD 70 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~------------~~~~~~~~----~~~~v~~~~~D 70 (485)
.++|+|.| .|-+|+.++..|...|.-+++++|...-...+.... .......+ ..-+++.+..+
T Consensus 2 ~~~v~iiG-~G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~~~~~ 80 (135)
T PF00899_consen 2 NKRVLIIG-AGGVGSEVAKNLARSGVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEAIPEK 80 (135)
T ss_dssp T-EEEEES-TSHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEEEESH
T ss_pred CCEEEEEC-cCHHHHHHHHHHHHhCCCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeeeeeecc
Confidence 46899998 889999999999999976899999764321111111 00111111 12345556666
Q ss_pred CCCHHHHHHHhcCCCEEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCccccc
Q 047227 71 LRHKAQVLQALQGAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVVF 136 (485)
Q Consensus 71 l~d~~~l~~~~~~~d~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy~ 136 (485)
+ +.+...+.++++|+||.+.. + ......+.+.|++.+. .+|+.++.+.+|
T Consensus 81 ~-~~~~~~~~~~~~d~vi~~~d------~--------~~~~~~l~~~~~~~~~-p~i~~~~~g~~G 130 (135)
T PF00899_consen 81 I-DEENIEELLKDYDIVIDCVD------S--------LAARLLLNEICREYGI-PFIDAGVNGFYG 130 (135)
T ss_dssp C-SHHHHHHHHHTSSEEEEESS------S--------HHHHHHHHHHHHHTT--EEEEEEEETTEE
T ss_pred c-ccccccccccCCCEEEEecC------C--------HHHHHHHHHHHHHcCC-CEEEEEeecCEE
Confidence 6 55668888899999998764 1 2223457788999886 688877655443
|
Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A .... |
| >COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.01 Score=57.58 Aligned_cols=115 Identities=18% Similarity=0.195 Sum_probs=77.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCc-eEEEeecCCccccCCccchhhhhhhhcC-CCeEEEEecCCCHHHHHHHhcCCC
Q 047227 8 RLCVVTGGRGFAARHLVEMLIRYDMF-SVRIADLSDSIALEPHEEQGILGEALRS-GRAHYVSFDLRHKAQVLQALQGAE 85 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~~G~~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~Dl~d~~~l~~~~~~~d 85 (485)
|||.|+|+ |.+|+.++..|+.++.. ++.++|...........+ +.+.... ..-..+.+| .| .+.++++|
T Consensus 1 ~KVaviGa-G~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~D---L~~~~~~~~~~~~i~~~-~~----y~~~~~aD 71 (313)
T COG0039 1 MKVAVIGA-GNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALD---LSHAAAPLGSDVKITGD-GD----YEDLKGAD 71 (313)
T ss_pred CeEEEECC-ChHHHHHHHHHhcccccceEEEEEcccccccchhcc---hhhcchhccCceEEecC-CC----hhhhcCCC
Confidence 58999998 99999999999888755 899999873322111111 1111111 111223333 22 45678999
Q ss_pred EEEEcCC-CCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecC
Q 047227 86 VVFHMAA-PNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSS 131 (485)
Q Consensus 86 ~Vih~aa-~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS 131 (485)
+|+-.|| +........+.+..|..-.+.+.+...+.+.+-++.+-|
T Consensus 72 iVvitAG~prKpGmtR~DLl~~Na~I~~~i~~~i~~~~~d~ivlVvt 118 (313)
T COG0039 72 IVVITAGVPRKPGMTRLDLLEKNAKIVKDIAKAIAKYAPDAIVLVVT 118 (313)
T ss_pred EEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCeEEEEec
Confidence 9999999 444445777889999999999999999988655554443
|
|
| >PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0091 Score=59.22 Aligned_cols=114 Identities=14% Similarity=0.120 Sum_probs=73.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccc------------------hhhhhhhhcCCCeEEE
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEE------------------QGILGEALRSGRAHYV 67 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~------------------~~~~~~~~~~~~v~~~ 67 (485)
..++|+|.| .|-+|+++++.|...|.-+++++|+..-...+...+ ...+......-.++.+
T Consensus 23 ~~~~VlIiG-~GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~~~ 101 (338)
T PRK12475 23 REKHVLIVG-AGALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIVPV 101 (338)
T ss_pred cCCcEEEEC-CCHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEEEE
Confidence 357899999 577999999999999966899999874211111110 0011111122345566
Q ss_pred EecCCCHHHHHHHhcCCCEEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCccccc
Q 047227 68 SFDLRHKAQVLQALQGAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVVF 136 (485)
Q Consensus 68 ~~Dl~d~~~l~~~~~~~d~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy~ 136 (485)
..|+. .+.+.++++++|+||.+.. +.. .-..+-++|++.++ .+|+.+..+.+|
T Consensus 102 ~~~~~-~~~~~~~~~~~DlVid~~D------~~~--------~r~~in~~~~~~~i-p~i~~~~~g~~G 154 (338)
T PRK12475 102 VTDVT-VEELEELVKEVDLIIDATD------NFD--------TRLLINDLSQKYNI-PWIYGGCVGSYG 154 (338)
T ss_pred eccCC-HHHHHHHhcCCCEEEEcCC------CHH--------HHHHHHHHHHHcCC-CEEEEEecccEE
Confidence 66775 4567888999999998763 211 11235678888886 578887766654
|
|
| >PRK00066 ldh L-lactate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.013 Score=57.68 Aligned_cols=114 Identities=13% Similarity=0.120 Sum_probs=75.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCc-eEEEeecCCccccCCccchhhhhhhhc-CCCeEEEEecCCCHHHHHHHhcC
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMF-SVRIADLSDSIALEPHEEQGILGEALR-SGRAHYVSFDLRHKAQVLQALQG 83 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~-~V~~~~r~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~Dl~d~~~l~~~~~~ 83 (485)
.++||.|+|+ |.+|+.++..|...|.. ++.++|+..........+ +.+... ..++... . .+ . +.+++
T Consensus 5 ~~~ki~iiGa-G~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~D---l~~~~~~~~~~~i~-~--~~---~-~~~~~ 73 (315)
T PRK00066 5 QHNKVVLVGD-GAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMD---LSHAVPFTSPTKIY-A--GD---Y-SDCKD 73 (315)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHH---HHhhccccCCeEEE-e--CC---H-HHhCC
Confidence 3579999997 99999999999988853 799999864421111001 111110 1223332 2 23 2 34789
Q ss_pred CCEEEEcCCC-CCCCCchhhhHHHHHHHHHHHHHHHHhcCCC-EEEEec
Q 047227 84 AEVVFHMAAP-NSSINNHKLHHSVNVEGTKNVIDACAELKVK-RLIYTS 130 (485)
Q Consensus 84 ~d~Vih~aa~-~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~-r~V~~S 130 (485)
+|+||-.|+. .....+....++.|+.-.+.+++.+++.+.+ .++.+|
T Consensus 74 adivIitag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvs 122 (315)
T PRK00066 74 ADLVVITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVAS 122 (315)
T ss_pred CCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc
Confidence 9999999994 3344566788999999999999999998754 344444
|
|
| >PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0077 Score=50.29 Aligned_cols=95 Identities=19% Similarity=0.237 Sum_probs=54.1
Q ss_pred EEEEEcCCCchHHHHHHHHHhcCCceEEEe-ecCCccccCCccchhhhhhhhc-CCCe-EEEEecCCCHHHHHHHhcCCC
Q 047227 9 LCVVTGGRGFAARHLVEMLIRYDMFSVRIA-DLSDSIALEPHEEQGILGEALR-SGRA-HYVSFDLRHKAQVLQALQGAE 85 (485)
Q Consensus 9 ~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~-~r~~~~~~~~~~~~~~~~~~~~-~~~v-~~~~~Dl~d~~~l~~~~~~~d 85 (485)
||.|+|+||++|+.+++.|.++.+.++..+ .+..+.... +..... ..+. ....-| .+.+ .+.++|
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~-------~~~~~~~~~~~~~~~~~~-~~~~----~~~~~D 68 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKP-------LSEVFPHPKGFEDLSVED-ADPE----ELSDVD 68 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSB-------HHHTTGGGTTTEEEBEEE-TSGH----HHTTES
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCe-------eehhccccccccceeEee-cchh----HhhcCC
Confidence 689999999999999999999765554444 443311111 111110 1111 222222 3333 337899
Q ss_pred EEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecC
Q 047227 86 VVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSS 131 (485)
Q Consensus 86 ~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS 131 (485)
+||.+.+ -..+..+...+.+.|+ ++|=.|+
T Consensus 69 vvf~a~~---------------~~~~~~~~~~~~~~g~-~ViD~s~ 98 (121)
T PF01118_consen 69 VVFLALP---------------HGASKELAPKLLKAGI-KVIDLSG 98 (121)
T ss_dssp EEEE-SC---------------HHHHHHHHHHHHHTTS-EEEESSS
T ss_pred EEEecCc---------------hhHHHHHHHHHhhCCc-EEEeCCH
Confidence 9998865 1223456666777787 5665554
|
This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C .... |
| >TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0088 Score=58.54 Aligned_cols=113 Identities=20% Similarity=0.162 Sum_probs=75.1
Q ss_pred EEEEEcCCCchHHHHHHHHHhcCC-ceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCCCEE
Q 047227 9 LCVVTGGRGFAARHLVEMLIRYDM-FSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGAEVV 87 (485)
Q Consensus 9 ~iLVtGgtG~iG~~l~~~Ll~~G~-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~d~V 87 (485)
||.|+|++|.+|++++..|..++. .++.++|..... ..... +.+.. ......... .+ +++.+.++++|+|
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~a~----g~a~D-L~~~~--~~~~i~~~~-~~-~~~~~~~~daDiv 71 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGAA----GVAAD-LSHIP--TAASVKGFS-GE-EGLENALKGADVV 71 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCCCc----EEEch-hhcCC--cCceEEEec-CC-CchHHHcCCCCEE
Confidence 589999999999999999988874 378889876521 11100 11111 112222101 01 1245688999999
Q ss_pred EEcCCC-CCCCCchhhhHHHHHHHHHHHHHHHHhcCCCE-EEEec
Q 047227 88 FHMAAP-NSSINNHKLHHSVNVEGTKNVIDACAELKVKR-LIYTS 130 (485)
Q Consensus 88 ih~aa~-~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r-~V~~S 130 (485)
|-.||. .....+.......|+.-.+.+.+...+.+.+- ++.+|
T Consensus 72 vitaG~~~~~g~~R~dll~~N~~I~~~i~~~i~~~~p~~iiivvs 116 (312)
T TIGR01772 72 VIPAGVPRKPGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVIT 116 (312)
T ss_pred EEeCCCCCCCCccHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEec
Confidence 999994 34445677889999999999999999988544 44444
|
Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases. |
| >PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0031 Score=56.71 Aligned_cols=73 Identities=16% Similarity=0.220 Sum_probs=46.2
Q ss_pred CCCEEEEEcC----------------CCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEe
Q 047227 6 NERLCVVTGG----------------RGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSF 69 (485)
Q Consensus 6 ~~~~iLVtGg----------------tG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 69 (485)
.+++||||+| ||-.|.++++.+..+| ++|+++....+. . .+++++.+..
T Consensus 2 ~gk~vlITaG~T~E~iD~VR~ItN~SSG~~G~~lA~~~~~~G-a~V~li~g~~~~--~------------~p~~~~~i~v 66 (185)
T PF04127_consen 2 KGKKVLITAGPTREPIDPVRFITNRSSGKMGAALAEEAARRG-AEVTLIHGPSSL--P------------PPPGVKVIRV 66 (185)
T ss_dssp TT-EEEEEESB-EEESSSSEEEEES--SHHHHHHHHHHHHTT--EEEEEE-TTS------------------TTEEEEE-
T ss_pred CCCEEEEECCCccccCCCceEecCCCcCHHHHHHHHHHHHCC-CEEEEEecCccc--c------------ccccceEEEe
Confidence 4688899876 7999999999999999 588888765321 0 1246666664
Q ss_pred cCCCHHHH----HHHhcCCCEEEEcCCCCC
Q 047227 70 DLRHKAQV----LQALQGAEVVFHMAAPNS 95 (485)
Q Consensus 70 Dl~d~~~l----~~~~~~~d~Vih~aa~~~ 95 (485)
...+++ .+.+++.|++||+||+.+
T Consensus 67 --~sa~em~~~~~~~~~~~Di~I~aAAVsD 94 (185)
T PF04127_consen 67 --ESAEEMLEAVKELLPSADIIIMAAAVSD 94 (185)
T ss_dssp --SSHHHHHHHHHHHGGGGSEEEE-SB--S
T ss_pred --cchhhhhhhhccccCcceeEEEecchhh
Confidence 344444 444557899999999543
|
These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A. |
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0059 Score=63.47 Aligned_cols=73 Identities=15% Similarity=0.120 Sum_probs=57.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHH-hcCCCE
Q 047227 8 RLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQA-LQGAEV 86 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~-~~~~d~ 86 (485)
|+|+|+|+ |.+|+++++.|.++| +.|+++++++.. ........+++.+.+|.++.+.+.++ ++++|.
T Consensus 1 m~viIiG~-G~ig~~~a~~L~~~g-~~v~vid~~~~~----------~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~ 68 (453)
T PRK09496 1 MKIIIVGA-GQVGYTLAENLSGEN-NDVTVIDTDEER----------LRRLQDRLDVRTVVGNGSSPDVLREAGAEDADL 68 (453)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCC-CcEEEEECCHHH----------HHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCE
Confidence 58999986 999999999999999 588899886541 11111124688999999999999888 788999
Q ss_pred EEEcCC
Q 047227 87 VFHMAA 92 (485)
Q Consensus 87 Vih~aa 92 (485)
|+-+..
T Consensus 69 vi~~~~ 74 (453)
T PRK09496 69 LIAVTD 74 (453)
T ss_pred EEEecC
Confidence 986653
|
|
| >TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0036 Score=63.14 Aligned_cols=101 Identities=15% Similarity=0.148 Sum_probs=67.4
Q ss_pred CCCCEEEEEcC----------------CCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEE
Q 047227 5 ENERLCVVTGG----------------RGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVS 68 (485)
Q Consensus 5 ~~~~~iLVtGg----------------tG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 68 (485)
.+++++||||| ||.+|.++++.|..+| .+|+++.+..... ...++ ..
T Consensus 183 ~~~~~vlit~g~t~E~iD~VR~itN~SSG~~g~~~a~~~~~~G-a~V~~~~g~~~~~--------------~~~~~--~~ 245 (390)
T TIGR00521 183 LEGKRVLITAGPTREPIDPVRFISNLSSGKMGLALAEAAYKRG-ADVTLITGPVSLL--------------TPPGV--KS 245 (390)
T ss_pred cCCceEEEecCCccCCCCceeeecCCCcchHHHHHHHHHHHCC-CEEEEeCCCCccC--------------CCCCc--EE
Confidence 46789999999 4789999999999999 6888877543210 01122 45
Q ss_pred ecCCCHHHH-HHHh----cCCCEEEEcCCCCCCCC---------chhhhHHHHHHHHHHHHHHHHhcC
Q 047227 69 FDLRHKAQV-LQAL----QGAEVVFHMAAPNSSIN---------NHKLHHSVNVEGTKNVIDACAELK 122 (485)
Q Consensus 69 ~Dl~d~~~l-~~~~----~~~d~Vih~aa~~~~~~---------~~~~~~~~nv~~t~~ll~a~~~~~ 122 (485)
.|+.+.+++ ..++ .+.|++|++||...... .....+..|..-+..+++..++..
T Consensus 246 ~~v~~~~~~~~~~~~~~~~~~D~~i~~Aavsd~~~~~~~~~Ki~~~~~~~~l~L~~~pdil~~l~~~~ 313 (390)
T TIGR00521 246 IKVSTAEEMLEAALNELAKDFDIFISAAAVADFKPKTVFEGKIKKQGEELSLKLVKNPDIIAEVRKIK 313 (390)
T ss_pred EEeccHHHHHHHHHHhhcccCCEEEEccccccccccccccccccccCCceeEEEEeCcHHHHHHHhhC
Confidence 788888777 4444 35899999999322110 001223466677777888777654
|
This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity. |
| >PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0073 Score=50.69 Aligned_cols=95 Identities=15% Similarity=0.141 Sum_probs=55.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHhc-CCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCCCE
Q 047227 8 RLCVVTGGRGFAARHLVEMLIRY-DMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGAEV 86 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~~-G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~d~ 86 (485)
|||.|.|.+|-.|+.+++.+.+. +..-|-++++..+........ .+... ...++... ++++++++.+|+
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g--~~~~~-~~~~~~v~-------~~l~~~~~~~DV 70 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVG--ELAGI-GPLGVPVT-------DDLEELLEEADV 70 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCH--HHCTS-ST-SSBEB-------S-HHHHTTH-SE
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhh--hhhCc-CCcccccc-------hhHHHhcccCCE
Confidence 68999999999999999999994 533355556655211111000 00000 01112211 356777777999
Q ss_pred EEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEE
Q 047227 87 VFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIY 128 (485)
Q Consensus 87 Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~ 128 (485)
||++.. ...+...++.|.+.|+ .+|.
T Consensus 71 vIDfT~---------------p~~~~~~~~~~~~~g~-~~Vi 96 (124)
T PF01113_consen 71 VIDFTN---------------PDAVYDNLEYALKHGV-PLVI 96 (124)
T ss_dssp EEEES----------------HHHHHHHHHHHHHHT--EEEE
T ss_pred EEEcCC---------------hHHhHHHHHHHHhCCC-CEEE
Confidence 998752 2445567888888886 4553
|
In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A .... |
| >KOG4022 consensus Dihydropteridine reductase DHPR/QDPR [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.12 Score=44.39 Aligned_cols=141 Identities=21% Similarity=0.215 Sum_probs=79.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCC-----HH----HHH
Q 047227 8 RLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRH-----KA----QVL 78 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d-----~~----~l~ 78 (485)
.||+|-||-|-+|+.+++.+.+++ |-|.-+|...+.. ... -+..|.++ .+ ++.
T Consensus 4 grVivYGGkGALGSacv~~Fkann-ywV~siDl~eNe~----------------Ad~-sI~V~~~~swtEQe~~v~~~vg 65 (236)
T KOG4022|consen 4 GRVIVYGGKGALGSACVEFFKANN-YWVLSIDLSENEQ----------------ADS-SILVDGNKSWTEQEQSVLEQVG 65 (236)
T ss_pred ceEEEEcCcchHhHHHHHHHHhcC-eEEEEEeeccccc----------------ccc-eEEecCCcchhHHHHHHHHHHH
Confidence 589999999999999999999999 5666666554311 111 23334332 11 223
Q ss_pred HHhc--CCCEEEEcCC--CCCC------CCchhhhHHHHHHHHHHHHHHH-HhcCCCEEEEecCccccccCCCCcCCCCC
Q 047227 79 QALQ--GAEVVFHMAA--PNSS------INNHKLHHSVNVEGTKNVIDAC-AELKVKRLIYTSSPSVVFDGVHGIINGNE 147 (485)
Q Consensus 79 ~~~~--~~d~Vih~aa--~~~~------~~~~~~~~~~nv~~t~~ll~a~-~~~~v~r~V~~SS~~vy~~~~~~~~~~~e 147 (485)
+.++ ++|+||..|+ .... ..+-+..+.-.+-...--...+ ...+..-++....+..-- +
T Consensus 66 ~sL~gekvDav~CVAGGWAGGnAksKdl~KNaDLMwKQSvwtSaIsa~lAt~HLK~GGLL~LtGAkaAl----------~ 135 (236)
T KOG4022|consen 66 SSLQGEKVDAVFCVAGGWAGGNAKSKDLVKNADLMWKQSVWTSAISAKLATTHLKPGGLLQLTGAKAAL----------G 135 (236)
T ss_pred HhhcccccceEEEeeccccCCCcchhhhhhchhhHHHHHHHHHHHHHHHHHhccCCCceeeeccccccc----------C
Confidence 3343 4899999998 1111 1233333433332222222222 222333455444433221 1
Q ss_pred CCCCCCCCCchHHHHHHHHHHHHHHHhCC-CCce
Q 047227 148 ALPYPPKHNDFYSATKAEGEALVIKANGT-NGLL 180 (485)
Q Consensus 148 ~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~-~g~~ 180 (485)
+....-.|+..|....++.+.++.+ .|++
T Consensus 136 ----gTPgMIGYGMAKaAVHqLt~SLaak~SGlP 165 (236)
T KOG4022|consen 136 ----GTPGMIGYGMAKAAVHQLTSSLAAKDSGLP 165 (236)
T ss_pred ----CCCcccchhHHHHHHHHHHHHhcccccCCC
Confidence 1234567999999999999988754 4554
|
|
| >cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.017 Score=56.68 Aligned_cols=112 Identities=14% Similarity=0.143 Sum_probs=75.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCc-eEEEeecCCccccCCccchhhhhhhhc--CCCeEEEEecCCCHHHHHHHhcCC
Q 047227 8 RLCVVTGGRGFAARHLVEMLIRYDMF-SVRIADLSDSIALEPHEEQGILGEALR--SGRAHYVSFDLRHKAQVLQALQGA 84 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~~G~~-~V~~~~r~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~Dl~d~~~l~~~~~~~ 84 (485)
++|.|.| +|.+|+.++..|+.+|.. +|.++|+..........+ +.+... ....... . .+. +.++++
T Consensus 1 ~kI~IIG-aG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~d---L~~~~~~~~~~~~i~-~--~~~----~~l~~a 69 (306)
T cd05291 1 RKVVIIG-AGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALD---LEDALAFLPSPVKIK-A--GDY----SDCKDA 69 (306)
T ss_pred CEEEEEC-CCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhh---HHHHhhccCCCeEEE-c--CCH----HHhCCC
Confidence 4799998 599999999999999853 899999875532211111 111111 1122222 2 232 235899
Q ss_pred CEEEEcCCC-CCCCCchhhhHHHHHHHHHHHHHHHHhcCCC-EEEEec
Q 047227 85 EVVFHMAAP-NSSINNHKLHHSVNVEGTKNVIDACAELKVK-RLIYTS 130 (485)
Q Consensus 85 d~Vih~aa~-~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~-r~V~~S 130 (485)
|+||.+++. .....+.......|+.-.+.+.+.+++.+.+ .++.+|
T Consensus 70 DIVIitag~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvs 117 (306)
T cd05291 70 DIVVITAGAPQKPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVAS 117 (306)
T ss_pred CEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEec
Confidence 999999993 3444466788999999999999999998754 455444
|
L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine |
| >PRK12548 shikimate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0028 Score=61.55 Aligned_cols=82 Identities=13% Similarity=0.177 Sum_probs=56.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhc--CCCeEEEEecCCCHHHHHHHhcC
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALR--SGRAHYVSFDLRHKAQVLQALQG 83 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~Dl~d~~~l~~~~~~ 83 (485)
++++++|+|+ |-+|++++..|.+.|..+|++++|...... ..++ +...+. .+++.....|+.|.+++.+.++.
T Consensus 125 ~~k~vlI~GA-GGagrAia~~La~~G~~~V~I~~R~~~~~~-~a~~---l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~ 199 (289)
T PRK12548 125 KGKKLTVIGA-GGAATAIQVQCALDGAKEITIFNIKDDFYE-RAEQ---TAEKIKQEVPECIVNVYDLNDTEKLKAEIAS 199 (289)
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCchHHH-HHHH---HHHHHhhcCCCceeEEechhhhhHHHhhhcc
Confidence 4679999997 899999999999999546999998742000 0000 111111 13445566788887778777788
Q ss_pred CCEEEEcCC
Q 047227 84 AEVVFHMAA 92 (485)
Q Consensus 84 ~d~Vih~aa 92 (485)
+|+|||+..
T Consensus 200 ~DilINaTp 208 (289)
T PRK12548 200 SDILVNATL 208 (289)
T ss_pred CCEEEEeCC
Confidence 888888765
|
|
| >cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1 | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.016 Score=52.90 Aligned_cols=112 Identities=13% Similarity=0.078 Sum_probs=68.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccch----------------hhhhhhhcCCCeEEEEec
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQ----------------GILGEALRSGRAHYVSFD 70 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~----------------~~~~~~~~~~~v~~~~~D 70 (485)
+.+|+|.|..| +|+++++.|...|-.+++++|...-...+...+. ..+......-+++.+...
T Consensus 21 ~s~VlIiG~gg-lG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~L~~lNp~v~i~~~~~~ 99 (197)
T cd01492 21 SARILLIGLKG-LGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRALNPRVKVSVDTDD 99 (197)
T ss_pred hCcEEEEcCCH-HHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHHHHHHCCCCEEEEEecC
Confidence 46899998666 9999999999999778999987643211111110 001111112234444444
Q ss_pred CCCHHHHHHHhcCCCEEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCccccc
Q 047227 71 LRHKAQVLQALQGAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVVF 136 (485)
Q Consensus 71 l~d~~~l~~~~~~~d~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy~ 136 (485)
+.+ ...+.++++|+||.+.. + ...-..+-+.|++.++ .+|+.++.+-||
T Consensus 100 ~~~--~~~~~~~~~dvVi~~~~------~--------~~~~~~ln~~c~~~~i-p~i~~~~~G~~G 148 (197)
T cd01492 100 ISE--KPEEFFSQFDVVVATEL------S--------RAELVKINELCRKLGV-KFYATGVHGLFG 148 (197)
T ss_pred ccc--cHHHHHhCCCEEEECCC------C--------HHHHHHHHHHHHHcCC-CEEEEEecCCEE
Confidence 442 24556788999997642 1 1222356688999987 588888766654
|
Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain. |
| >cd05295 MDH_like Malate dehydrogenase-like | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.018 Score=58.78 Aligned_cols=180 Identities=10% Similarity=-0.045 Sum_probs=101.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhc---CCc---eEEEeecCCccccCCccchhhhhhhhc-CCCeEEEEecCCCHHHHHH
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRY---DMF---SVRIADLSDSIALEPHEEQGILGEALR-SGRAHYVSFDLRHKAQVLQ 79 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~---G~~---~V~~~~r~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~Dl~d~~~l~~ 79 (485)
.-+|+||||+|.||.+|+..+.+- |.. .+.++|..+...........+...... ..++... .| + .+
T Consensus 123 p~~V~vtgAag~i~Y~l~~~ia~G~~fG~~~~v~L~LlDi~~~~~~l~G~amDL~D~a~pll~~v~i~-~~--~----~e 195 (452)
T cd05295 123 PLQVCITNASAPLCYHLIPSLASGEVFGMEEEISIHLLDSPENLEKLKGLVMEVEDLAFPLLRGISVT-TD--L----DV 195 (452)
T ss_pred ceEEEEecCcHHHHHHHHHHHhCCcccCCCCeEEEEEEcCCCchhhHHHHHHHHHHhHHhhcCCcEEE-EC--C----HH
Confidence 368999999999999999988762 321 355566532211111111111111111 1123333 22 2 46
Q ss_pred HhcCCCEEEEcCC-CCCCCCchhhhHHHHHHHHHHHHHHHHhcCC--CEEEEecC-cc---ccccCCCCcCCCCCCCCCC
Q 047227 80 ALQGAEVVFHMAA-PNSSINNHKLHHSVNVEGTKNVIDACAELKV--KRLIYTSS-PS---VVFDGVHGIINGNEALPYP 152 (485)
Q Consensus 80 ~~~~~d~Vih~aa-~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v--~r~V~~SS-~~---vy~~~~~~~~~~~e~~~~~ 152 (485)
.++++|+||-+++ +.....+.....+.|+.-.+.+..+..+.+. .+++.+.| +. .|.- ...+..
T Consensus 196 a~~daDvvIitag~prk~G~~R~DLL~~N~~Ifk~~g~~I~~~a~~~~~VlVv~tNPvD~~t~i~-------~k~apg-- 266 (452)
T cd05295 196 AFKDAHVIVLLDDFLIKEGEDLEGCIRSRVAICQLYGPLIEKNAKEDVKVIVAGRTFLNLKTSIL-------IKYAPS-- 266 (452)
T ss_pred HhCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCcHHHHHHHH-------HHHcCC--
Confidence 7889999999999 4444456778899999999999999998875 56665554 11 0100 000000
Q ss_pred CCCCchHHHHHHHHHHHHHHHhCCCCceEEEEecCCcccCCCCCChHHHH
Q 047227 153 PKHNDFYSATKAEGEALVIKANGTNGLLTCCIRPSSIFGPGDRLLVPSLV 202 (485)
Q Consensus 153 ~~~~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~~~~~~~~ 202 (485)
..+...-|.+....-++....+++.+++...++-..|+|......++.+-
T Consensus 267 iP~~rVig~gtlds~R~r~~LA~kl~V~~~~V~~~~VwGeHG~sqvpd~S 316 (452)
T cd05295 267 IPRKNIIAVARLQENRAKALLARKLNVNSAGIKDVIVWGNIGGNTYIDLS 316 (452)
T ss_pred CCHHHEEEecchHHHHHHHHHHHHhCcCHHHceeeEEEEccCCceeeeee
Confidence 11112222222333333344455667788888778888986665555443
|
These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PLN02383 aspartate semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.016 Score=57.55 Aligned_cols=101 Identities=16% Similarity=0.185 Sum_probs=58.4
Q ss_pred CCCCCCCCEEEEEcCCCchHHHHHHHHHhcCCc--eEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHH
Q 047227 1 MSGEENERLCVVTGGRGFAARHLVEMLIRYDMF--SVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVL 78 (485)
Q Consensus 1 M~~~~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~ 78 (485)
|.-+...++|.|.|+||++|..+++.|.+++|. ++..+...++ ...... ..+.+....++. .
T Consensus 1 ~~~~~~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rs--aGk~~~---------~~~~~~~v~~~~-~---- 64 (344)
T PLN02383 1 MALTENGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARS--AGKKVT---------FEGRDYTVEELT-E---- 64 (344)
T ss_pred CCccCCCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCC--CCCeee---------ecCceeEEEeCC-H----
Confidence 444556689999999999999999999998764 3433432221 110000 012233333432 2
Q ss_pred HHhcCCCEEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCcc
Q 047227 79 QALQGAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPS 133 (485)
Q Consensus 79 ~~~~~~d~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~ 133 (485)
+.++++|+||-+++.. .+..+...+.+.|+ ++|=.|+..
T Consensus 65 ~~~~~~D~vf~a~p~~---------------~s~~~~~~~~~~g~-~VIDlS~~f 103 (344)
T PLN02383 65 DSFDGVDIALFSAGGS---------------ISKKFGPIAVDKGA-VVVDNSSAF 103 (344)
T ss_pred HHHcCCCEEEECCCcH---------------HHHHHHHHHHhCCC-EEEECCchh
Confidence 2347899999777521 12344555555665 677666643
|
|
| >PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0046 Score=64.20 Aligned_cols=76 Identities=18% Similarity=0.164 Sum_probs=54.4
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCC
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGA 84 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 84 (485)
.++++|+|+|+++ +|..+++.|.++| ++|++.++...... .+ ....+...+++++.+|..+ +...++
T Consensus 3 ~~~k~v~iiG~g~-~G~~~A~~l~~~G-~~V~~~d~~~~~~~---~~---~~~~l~~~~~~~~~~~~~~-----~~~~~~ 69 (450)
T PRK14106 3 LKGKKVLVVGAGV-SGLALAKFLKKLG-AKVILTDEKEEDQL---KE---ALEELGELGIELVLGEYPE-----EFLEGV 69 (450)
T ss_pred cCCCEEEEECCCH-HHHHHHHHHHHCC-CEEEEEeCCchHHH---HH---HHHHHHhcCCEEEeCCcch-----hHhhcC
Confidence 3568999999877 9999999999999 69999988642111 00 1112233467788888766 234679
Q ss_pred CEEEEcCCC
Q 047227 85 EVVFHMAAP 93 (485)
Q Consensus 85 d~Vih~aa~ 93 (485)
|+||+.++.
T Consensus 70 d~vv~~~g~ 78 (450)
T PRK14106 70 DLVVVSPGV 78 (450)
T ss_pred CEEEECCCC
Confidence 999998874
|
|
| >PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.015 Score=57.64 Aligned_cols=95 Identities=15% Similarity=0.191 Sum_probs=55.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCc--eEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCC
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMF--SVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGA 84 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 84 (485)
+++|.|+|+||++|..+++.|.+++|. ++..+....+. . +. +...+. ..++.+.+.. + ++++
T Consensus 4 ~~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s~~~a--G--~~-------l~~~~~---~l~~~~~~~~-~-~~~v 67 (336)
T PRK05671 4 PLDIAVVGATGTVGEALVQILEERDFPVGTLHLLASSESA--G--HS-------VPFAGK---NLRVREVDSF-D-FSQV 67 (336)
T ss_pred CCEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEECcccC--C--Ce-------eccCCc---ceEEeeCChH-H-hcCC
Confidence 379999999999999999999987754 33344332211 0 00 001111 1222222211 2 4789
Q ss_pred CEEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCcc
Q 047227 85 EVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPS 133 (485)
Q Consensus 85 d~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~ 133 (485)
|+||-+.+. .....++..+.+.|+ ++|=.|+..
T Consensus 68 D~vFla~p~---------------~~s~~~v~~~~~~G~-~VIDlS~~f 100 (336)
T PRK05671 68 QLAFFAAGA---------------AVSRSFAEKARAAGC-SVIDLSGAL 100 (336)
T ss_pred CEEEEcCCH---------------HHHHHHHHHHHHCCC-eEEECchhh
Confidence 999977641 112347777777886 567666643
|
|
| >COG4982 3-oxoacyl-[acyl-carrier protein] | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.14 Score=53.14 Aligned_cols=168 Identities=15% Similarity=0.165 Sum_probs=92.2
Q ss_pred CCCEEEEEcCC-CchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhc-CCCeEEEEecCCCHHHHHHHhc-
Q 047227 6 NERLCVVTGGR-GFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALR-SGRAHYVSFDLRHKAQVLQALQ- 82 (485)
Q Consensus 6 ~~~~iLVtGgt-G~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~Dl~d~~~l~~~~~- 82 (485)
..+-.||||++ |-||..+++.|++.| .+|+++...-+.. ...--+.+...+.. ....-++..++.+..+++.+++
T Consensus 395 ~d~valVTGA~~gSIaa~Vv~~LL~gG-AtVI~TTS~~s~~-r~efyr~LYa~~a~~ga~LwvVpaN~~SysDVdAlIew 472 (866)
T COG4982 395 GDKVALVTGASKGSIAAAVVARLLAGG-ATVIATTSRLSEE-RTEFYRSLYARHARYGAALWVVPANMGSYSDVDALIEW 472 (866)
T ss_pred ccceEEEecCCCcchHHHHHHHHHhCC-cEEEEEcccccHH-HHHHHHHHHHhhCCCCceEEEEeccccchhhHHHHHHH
Confidence 35678999998 999999999999999 6888776542210 00000111111111 2233445556655554544442
Q ss_pred --------------------CCCEEEEcCCCCCCC----Cch--hhhHHHHHHHHHHHHHHHHhcCCC-------EEEEe
Q 047227 83 --------------------GAEVVFHMAAPNSSI----NNH--KLHHSVNVEGTKNVIDACAELKVK-------RLIYT 129 (485)
Q Consensus 83 --------------------~~d~Vih~aa~~~~~----~~~--~~~~~~nv~~t~~ll~a~~~~~v~-------r~V~~ 129 (485)
.+|.+|-+|++.... .++ +.-+++-.-...+++-..++.+.. ++|.-
T Consensus 473 Ig~eq~~t~g~~s~~~k~a~~ptll~PFAAp~v~G~l~~agsraE~~~rilLw~V~Rliggl~~~~s~r~v~~R~hVVLP 552 (866)
T COG4982 473 IGDEQTETVGPQSIHIKLAWTPTLLFPFAAPRVSGELADAGSRAEFAMRILLWNVLRLIGGLKKQGSSRGVDTRLHVVLP 552 (866)
T ss_pred hccccccccCCcceecccccCcceeeecccCCccCccccCCchHHHHHHHHHHHHHHHHHHhhhhccccCcccceEEEec
Confidence 147899999943221 122 222333333444555555554321 34444
Q ss_pred cCccccccCCCCcCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhCCCC----ceEEEEecCCccc
Q 047227 130 SSPSVVFDGVHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANGTNG----LLTCCIRPSSIFG 191 (485)
Q Consensus 130 SS~~vy~~~~~~~~~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~g----~~~~ilRp~~v~G 191 (485)
.|+ +++.+ .....|+.+|...|.++.++..+.+ +..|-.+.|.+-|
T Consensus 553 gSP------NrG~F----------GgDGaYgEsK~aldav~~RW~sEs~Wa~~vsl~~A~IGWtrG 602 (866)
T COG4982 553 GSP------NRGMF----------GGDGAYGESKLALDAVVNRWHSESSWAARVSLAHALIGWTRG 602 (866)
T ss_pred CCC------CCCcc----------CCCcchhhHHHHHHHHHHHhhccchhhHHHHHhhhheeeecc
Confidence 442 12221 2335799999999999999887653 2334444444433
|
|
| >TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.011 Score=54.13 Aligned_cols=113 Identities=13% Similarity=0.114 Sum_probs=70.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccch------------hhhhhhhc--CCC--eEEEEe
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQ------------GILGEALR--SGR--AHYVSF 69 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~------------~~~~~~~~--~~~--v~~~~~ 69 (485)
.+.+|+|.| .|-+|+++++.|...|--+++++|...-...+...+. ......+. .+. ++.+..
T Consensus 20 ~~~~VlviG-~GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~~ 98 (202)
T TIGR02356 20 LNSHVLIIG-AGGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNSDIQVTALKE 98 (202)
T ss_pred cCCCEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCCCCEEEEehh
Confidence 356899998 8899999999999999658999988732111111100 00011111 233 333434
Q ss_pred cCCCHHHHHHHhcCCCEEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCcccc
Q 047227 70 DLRHKAQVLQALQGAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVV 135 (485)
Q Consensus 70 Dl~d~~~l~~~~~~~d~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy 135 (485)
++ +.+.+.+.++++|+||.+.. ++ ..-..+-+.|++.++ .+|+.++.+.+
T Consensus 99 ~i-~~~~~~~~~~~~D~Vi~~~d------~~--------~~r~~l~~~~~~~~i-p~i~~~~~g~~ 148 (202)
T TIGR02356 99 RV-TAENLELLINNVDLVLDCTD------NF--------ATRYLINDACVALGT-PLISAAVVGFG 148 (202)
T ss_pred cC-CHHHHHHHHhCCCEEEECCC------CH--------HHHHHHHHHHHHcCC-CEEEEEeccCe
Confidence 44 34567788899999998753 11 222346788888886 58887765544
|
coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli. |
| >cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.022 Score=53.37 Aligned_cols=113 Identities=16% Similarity=0.130 Sum_probs=71.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccch------------hhhhhhhc--CC--CeEEEEe
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQ------------GILGEALR--SG--RAHYVSF 69 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~------------~~~~~~~~--~~--~v~~~~~ 69 (485)
.+.+|+|.| .|-+|+++++.|...|.-+++++|...-...+...+. ....+.++ .+ +++.+..
T Consensus 20 ~~~~VlivG-~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~~~~ 98 (228)
T cd00757 20 KNARVLVVG-AGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEAYNE 98 (228)
T ss_pred hCCcEEEEC-CCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEEecc
Confidence 356899998 8899999999999999778999987642211111110 00011111 22 4555555
Q ss_pred cCCCHHHHHHHhcCCCEEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCcccc
Q 047227 70 DLRHKAQVLQALQGAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVV 135 (485)
Q Consensus 70 Dl~d~~~l~~~~~~~d~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy 135 (485)
++ +.+.+.+.++++|+||.+.. ++ ..-..+-++|++.++ .+|+.+..+.+
T Consensus 99 ~i-~~~~~~~~~~~~DvVi~~~d------~~--------~~r~~l~~~~~~~~i-p~i~~g~~g~~ 148 (228)
T cd00757 99 RL-DAENAEELIAGYDLVLDCTD------NF--------ATRYLINDACVKLGK-PLVSGAVLGFE 148 (228)
T ss_pred ee-CHHHHHHHHhCCCEEEEcCC------CH--------HHHHHHHHHHHHcCC-CEEEEEeccCE
Confidence 55 34567788899999998764 11 122357788888885 68887765544
|
Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1). |
| >PTZ00117 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.034 Score=54.82 Aligned_cols=118 Identities=11% Similarity=0.103 Sum_probs=76.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCe-EEEEecCCCHHHHHHHhcCC
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRA-HYVSFDLRHKAQVLQALQGA 84 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~Dl~d~~~l~~~~~~~ 84 (485)
+.++|.|+|+ |.+|+.++..|...|..++.++|........ .... +.+.....+. ..+.+ -.| ++ .++++
T Consensus 4 ~~~KI~IIGa-G~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g--~~lD-l~~~~~~~~~~~~i~~-~~d---~~-~l~~A 74 (319)
T PTZ00117 4 KRKKISMIGA-GQIGSTVALLILQKNLGDVVLYDVIKGVPQG--KALD-LKHFSTLVGSNINILG-TNN---YE-DIKDS 74 (319)
T ss_pred CCcEEEEECC-CHHHHHHHHHHHHCCCCeEEEEECCCccchh--HHHH-HhhhccccCCCeEEEe-CCC---HH-HhCCC
Confidence 4579999996 9999999998888885579999986543211 0000 1111110111 12221 123 33 66899
Q ss_pred CEEEEcCCCC-CCCCchhhhHHHHHHHHHHHHHHHHhcCCCE-EEEecCc
Q 047227 85 EVVFHMAAPN-SSINNHKLHHSVNVEGTKNVIDACAELKVKR-LIYTSSP 132 (485)
Q Consensus 85 d~Vih~aa~~-~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r-~V~~SS~ 132 (485)
|+||-+++.. ............|..-.+.+.+.+.+...+. ++.+|-+
T Consensus 75 DiVVitag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsNP 124 (319)
T PTZ00117 75 DVVVITAGVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTNP 124 (319)
T ss_pred CEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCh
Confidence 9999999843 3334566788899999999999999887554 6666543
|
|
| >PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.0077 Score=51.37 Aligned_cols=78 Identities=21% Similarity=0.252 Sum_probs=54.0
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCC
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGA 84 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 84 (485)
.++++++|.| +|-.|+.++.+|.+.|..+|++++|...+... +...+....++.+..+ + +.+.+.++
T Consensus 10 l~~~~vlviG-aGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~-------l~~~~~~~~~~~~~~~--~---~~~~~~~~ 76 (135)
T PF01488_consen 10 LKGKRVLVIG-AGGAARAVAAALAALGAKEITIVNRTPERAEA-------LAEEFGGVNIEAIPLE--D---LEEALQEA 76 (135)
T ss_dssp GTTSEEEEES-SSHHHHHHHHHHHHTTSSEEEEEESSHHHHHH-------HHHHHTGCSEEEEEGG--G---HCHHHHTE
T ss_pred cCCCEEEEEC-CHHHHHHHHHHHHHcCCCEEEEEECCHHHHHH-------HHHHcCccccceeeHH--H---HHHHHhhC
Confidence 4578999999 58899999999999996679999997542211 2222223345555443 3 44677889
Q ss_pred CEEEEcCCCCC
Q 047227 85 EVVFHMAAPNS 95 (485)
Q Consensus 85 d~Vih~aa~~~ 95 (485)
|+||++.+...
T Consensus 77 DivI~aT~~~~ 87 (135)
T PF01488_consen 77 DIVINATPSGM 87 (135)
T ss_dssp SEEEE-SSTTS
T ss_pred CeEEEecCCCC
Confidence 99999988443
|
Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C .... |
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.024 Score=46.70 Aligned_cols=70 Identities=21% Similarity=0.233 Sum_probs=52.9
Q ss_pred EEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHH-hcCCCEEE
Q 047227 10 CVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQA-LQGAEVVF 88 (485)
Q Consensus 10 iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~-~~~~d~Vi 88 (485)
|+|.| .|-+|..+++.|.+.+ ..|+++++.+. ....+...++.++.||.+|++.+.++ +++++.|+
T Consensus 1 vvI~G-~g~~~~~i~~~L~~~~-~~vvvid~d~~-----------~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv 67 (116)
T PF02254_consen 1 VVIIG-YGRIGREIAEQLKEGG-IDVVVIDRDPE-----------RVEELREEGVEVIYGDATDPEVLERAGIEKADAVV 67 (116)
T ss_dssp EEEES--SHHHHHHHHHHHHTT-SEEEEEESSHH-----------HHHHHHHTTSEEEES-TTSHHHHHHTTGGCESEEE
T ss_pred eEEEc-CCHHHHHHHHHHHhCC-CEEEEEECCcH-----------HHHHHHhcccccccccchhhhHHhhcCccccCEEE
Confidence 56777 5799999999999966 68999988764 22223345689999999999988886 57799888
Q ss_pred EcCC
Q 047227 89 HMAA 92 (485)
Q Consensus 89 h~aa 92 (485)
-+..
T Consensus 68 ~~~~ 71 (116)
T PF02254_consen 68 ILTD 71 (116)
T ss_dssp EESS
T ss_pred EccC
Confidence 6653
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.015 Score=58.17 Aligned_cols=35 Identities=20% Similarity=0.304 Sum_probs=29.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecC
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLS 41 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~ 41 (485)
+++|+|+||||++|+.+++.|.++...++..+.++
T Consensus 3 ~~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~s 37 (349)
T PRK08664 3 KLKVGILGATGMVGQRFVQLLANHPWFEVTALAAS 37 (349)
T ss_pred CcEEEEECCCCHHHHHHHHHHHcCCCceEEEEEcC
Confidence 47999999999999999999998875577777444
|
|
| >cd05290 LDH_3 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.033 Score=54.52 Aligned_cols=111 Identities=14% Similarity=0.195 Sum_probs=73.2
Q ss_pred EEEEEcCCCchHHHHHHHHHhcCCc-eEEEeecCCccccCCccchhhhhhhhc---CCCeEEEEecCCCHHHHHHHhcCC
Q 047227 9 LCVVTGGRGFAARHLVEMLIRYDMF-SVRIADLSDSIALEPHEEQGILGEALR---SGRAHYVSFDLRHKAQVLQALQGA 84 (485)
Q Consensus 9 ~iLVtGgtG~iG~~l~~~Ll~~G~~-~V~~~~r~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~Dl~d~~~l~~~~~~~ 84 (485)
||.|.|+ |.+|+.++..|+.+|.. ++.++|......... ... +.+... ...++...+ | .+.++++
T Consensus 1 Ki~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~--a~D-L~~~~~~~~~~~~~i~~~---~----y~~~~~a 69 (307)
T cd05290 1 KLVVIGA-GHVGSAVLNYALALGLFSEIVLIDVNEGVAEGE--ALD-FHHATALTYSTNTKIRAG---D----YDDCADA 69 (307)
T ss_pred CEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHH--HHH-HHhhhccCCCCCEEEEEC---C----HHHhCCC
Confidence 5788996 99999999999988753 799998754322111 001 111111 123444433 3 3567899
Q ss_pred CEEEEcCCCCCC-CCc--hhhhHHHHHHHHHHHHHHHHhcCCCEEEEec
Q 047227 85 EVVFHMAAPNSS-INN--HKLHHSVNVEGTKNVIDACAELKVKRLIYTS 130 (485)
Q Consensus 85 d~Vih~aa~~~~-~~~--~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~S 130 (485)
|+||-.||.... ... ....+..|+.-.+.+.....+++..-++.+-
T Consensus 70 DivvitaG~~~kpg~tr~R~dll~~N~~I~~~i~~~i~~~~p~~i~ivv 118 (307)
T cd05290 70 DIIVITAGPSIDPGNTDDRLDLAQTNAKIIREIMGNITKVTKEAVIILI 118 (307)
T ss_pred CEEEECCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEe
Confidence 999999994332 223 4678899999999999999999865444433
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.0086 Score=59.74 Aligned_cols=100 Identities=13% Similarity=0.170 Sum_probs=56.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCceEE-EeecCCccccCCccchhhhhhhhcCCCeEEE-EecCCCHHHHHHHhcCCC
Q 047227 8 RLCVVTGGRGFAARHLVEMLIRYDMFSVR-IADLSDSIALEPHEEQGILGEALRSGRAHYV-SFDLRHKAQVLQALQGAE 85 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~-~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~Dl~d~~~l~~~~~~~d 85 (485)
|+|.|.|+||++|..+++.|.+....++. ++++.++.... +.... +.+... ..++.+. +..++.+++|
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~-------~~~~~--~~l~~~~~~~~~~~-~~~~~~~~~D 70 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKP-------VSEVH--PHLRGLVDLNLEPI-DEEEIAEDAD 70 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCC-------hHHhC--ccccccCCceeecC-CHHHhhcCCC
Confidence 58999999999999999999987545666 33443221110 11000 111111 1111111 1223345799
Q ss_pred EEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCcc
Q 047227 86 VVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPS 133 (485)
Q Consensus 86 ~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~ 133 (485)
+||-+.+.. ....+...+.+.| +++|=.|+..
T Consensus 71 vVf~alP~~---------------~s~~~~~~~~~~G-~~VIDlS~~f 102 (346)
T TIGR01850 71 VVFLALPHG---------------VSAELAPELLAAG-VKVIDLSADF 102 (346)
T ss_pred EEEECCCch---------------HHHHHHHHHHhCC-CEEEeCChhh
Confidence 999877521 2345666676777 4788888753
|
This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons. |
| >PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.013 Score=58.50 Aligned_cols=100 Identities=17% Similarity=0.175 Sum_probs=56.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEE-EecCCCHHHHHHHhcCCC
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYV-SFDLRHKAQVLQALQGAE 85 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~Dl~d~~~l~~~~~~~d 85 (485)
|++|+|+|+||++|+.+++.|.+....++..+.+....... +... .+.+..+ ..+..+.+.. .+.++|
T Consensus 2 m~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~~~g~~-------l~~~--~~~~~~~~~~~~~~~~~~--~~~~vD 70 (343)
T PRK00436 2 MIKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSSAGKP-------LSDV--HPHLRGLVDLVLEPLDPE--ILAGAD 70 (343)
T ss_pred CeEEEEECCCCHHHHHHHHHHHcCCCceEEEEECccccCcc-------hHHh--CcccccccCceeecCCHH--HhcCCC
Confidence 47999999999999999999998754566665442221100 0000 0111111 1122222222 446799
Q ss_pred EEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCcc
Q 047227 86 VVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPS 133 (485)
Q Consensus 86 ~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~ 133 (485)
+||-+... .....+...+.+.|+ ++|=.|+..
T Consensus 71 ~Vf~alP~---------------~~~~~~v~~a~~aG~-~VID~S~~f 102 (343)
T PRK00436 71 VVFLALPH---------------GVSMDLAPQLLEAGV-KVIDLSADF 102 (343)
T ss_pred EEEECCCc---------------HHHHHHHHHHHhCCC-EEEECCccc
Confidence 99976642 122356666666674 777777643
|
|
| >PTZ00082 L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.048 Score=53.77 Aligned_cols=118 Identities=14% Similarity=0.169 Sum_probs=75.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhh-hhcCCCeEEEEecCCCHHHHHHHhcCCC
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGE-ALRSGRAHYVSFDLRHKAQVLQALQGAE 85 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~Dl~d~~~l~~~~~~~d 85 (485)
.+||.|+| +|.+|+.++..+...|...|.++|..+..... +....... .......+.... .|. +.++++|
T Consensus 6 ~~KI~IIG-aG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~--~~ld~~~~~~~~~~~~~I~~~--~d~----~~l~~aD 76 (321)
T PTZ00082 6 RRKISLIG-SGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQG--KALDISHSNVIAGSNSKVIGT--NNY----EDIAGSD 76 (321)
T ss_pred CCEEEEEC-CCHHHHHHHHHHHhCCCCeEEEEeCCCchhhH--HHHHHHhhhhccCCCeEEEEC--CCH----HHhCCCC
Confidence 47999999 79999999999998886579999987653211 11000110 011112222221 232 3568999
Q ss_pred EEEEcCCCCC-CCC-----chhhhHHHHHHHHHHHHHHHHhcCCC-EEEEecCcc
Q 047227 86 VVFHMAAPNS-SIN-----NHKLHHSVNVEGTKNVIDACAELKVK-RLIYTSSPS 133 (485)
Q Consensus 86 ~Vih~aa~~~-~~~-----~~~~~~~~nv~~t~~ll~a~~~~~v~-r~V~~SS~~ 133 (485)
+||.+++... ... +.......|+.-.+.+.+.+.+.+.+ .++.+|-+.
T Consensus 77 iVI~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sNP~ 131 (321)
T PTZ00082 77 VVIVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITNPL 131 (321)
T ss_pred EEEECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH
Confidence 9999998432 222 44567788999999999999988865 566666543
|
|
| >cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.052 Score=46.68 Aligned_cols=109 Identities=14% Similarity=0.194 Sum_probs=67.6
Q ss_pred EEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccc------------hhhhhhhhc--CC--CeEEEEecCC
Q 047227 9 LCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEE------------QGILGEALR--SG--RAHYVSFDLR 72 (485)
Q Consensus 9 ~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~------------~~~~~~~~~--~~--~v~~~~~Dl~ 72 (485)
+|+|.| .|-+|+++++.|...|..+++++|...-...+...+ .....+.++ .+ +++.+..++.
T Consensus 1 ~VliiG-~GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~i~~~~~~~~ 79 (143)
T cd01483 1 RVLLVG-LGGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVPEGIS 79 (143)
T ss_pred CEEEEC-CCHHHHHHHHHHHHCCCCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCcEEEEEeeecC
Confidence 488998 599999999999999976899998763211111111 000111111 23 3444555554
Q ss_pred CHHHHHHHhcCCCEEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCccc
Q 047227 73 HKAQVLQALQGAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSV 134 (485)
Q Consensus 73 d~~~l~~~~~~~d~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~v 134 (485)
+. ...+.+.++|+||.+... ......+.++|++.++ .++..++...
T Consensus 80 ~~-~~~~~~~~~diVi~~~d~--------------~~~~~~l~~~~~~~~i-~~i~~~~~g~ 125 (143)
T cd01483 80 ED-NLDDFLDGVDLVIDAIDN--------------IAVRRALNRACKELGI-PVIDAGGLGL 125 (143)
T ss_pred hh-hHHHHhcCCCEEEECCCC--------------HHHHHHHHHHHHHcCC-CEEEEcCCCc
Confidence 43 346777899999987641 2233467889999885 5777776543
|
This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. |
| >PRK05690 molybdopterin biosynthesis protein MoeB; Provisional | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.051 Score=51.43 Aligned_cols=111 Identities=13% Similarity=0.118 Sum_probs=69.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccch----------------hhhhhhhcCCCeEEEEe
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQ----------------GILGEALRSGRAHYVSF 69 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~----------------~~~~~~~~~~~v~~~~~ 69 (485)
...+|+|.|. |-+|+++++.|...|--+++++|...-...+...+. ..+......-+++.+..
T Consensus 31 ~~~~VliiG~-GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~lnp~v~i~~~~~ 109 (245)
T PRK05690 31 KAARVLVVGL-GGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARINPHIAIETINA 109 (245)
T ss_pred cCCeEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHCCCCEEEEEec
Confidence 3579999985 999999999999999668999987643211111100 00111111223444555
Q ss_pred cCCCHHHHHHHhcCCCEEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCcc
Q 047227 70 DLRHKAQVLQALQGAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPS 133 (485)
Q Consensus 70 Dl~d~~~l~~~~~~~d~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~ 133 (485)
.+. .+...+.++++|+||.+.. ++ ..-..+-++|++.++ .+|+.++..
T Consensus 110 ~i~-~~~~~~~~~~~DiVi~~~D------~~--------~~r~~ln~~~~~~~i-p~v~~~~~g 157 (245)
T PRK05690 110 RLD-DDELAALIAGHDLVLDCTD------NV--------ATRNQLNRACFAAKK-PLVSGAAIR 157 (245)
T ss_pred cCC-HHHHHHHHhcCCEEEecCC------CH--------HHHHHHHHHHHHhCC-EEEEeeecc
Confidence 554 4567778899999998763 22 122346788888885 577765533
|
|
| >PRK08644 thiamine biosynthesis protein ThiF; Provisional | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.047 Score=50.43 Aligned_cols=114 Identities=12% Similarity=0.082 Sum_probs=69.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccch---------------hhhhhhhcCCCeEEEEec
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQ---------------GILGEALRSGRAHYVSFD 70 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~---------------~~~~~~~~~~~v~~~~~D 70 (485)
...+|+|.| .|-+|+++++.|...|.-+++++|...-...+...+. ..+......-+++.+...
T Consensus 27 ~~~~V~ViG-~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~dvG~~Ka~~a~~~l~~lnp~v~v~~~~~~ 105 (212)
T PRK08644 27 KKAKVGIAG-AGGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQYFISQIGMPKVEALKENLLEINPFVEIEAHNEK 105 (212)
T ss_pred hCCCEEEEC-cCHHHHHHHHHHHHcCCCeEEEEeCCEeccccccccEeehhhCCChHHHHHHHHHHHHCCCCEEEEEeee
Confidence 346899998 7899999999999999768999998732111111110 000111112234445555
Q ss_pred CCCHHHHHHHhcCCCEEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhc-CCCEEEEecCccccc
Q 047227 71 LRHKAQVLQALQGAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAEL-KVKRLIYTSSPSVVF 136 (485)
Q Consensus 71 l~d~~~l~~~~~~~d~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~-~v~r~V~~SS~~vy~ 136 (485)
+.+ +.+.+.++++|+||.+.. ++ ..-..+.+.|.+. ++ .+|+.+...-|+
T Consensus 106 i~~-~~~~~~~~~~DvVI~a~D------~~--------~~r~~l~~~~~~~~~~-p~I~~~~~~~~~ 156 (212)
T PRK08644 106 IDE-DNIEELFKDCDIVVEAFD------NA--------ETKAMLVETVLEHPGK-KLVAASGMAGYG 156 (212)
T ss_pred cCH-HHHHHHHcCCCEEEECCC------CH--------HHHHHHHHHHHHhCCC-CEEEeehhhccC
Confidence 544 456778899999998742 22 1223566788887 64 578776544443
|
|
| >TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.06 Score=54.12 Aligned_cols=116 Identities=11% Similarity=0.095 Sum_probs=72.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCce------EEEe--ecCCccccCCccchhhhhhh-hcCCCeEEEEecCCCHHHH
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFS------VRIA--DLSDSIALEPHEEQGILGEA-LRSGRAHYVSFDLRHKAQV 77 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~------V~~~--~r~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~l 77 (485)
.-||.|+|++|.+|++++..|...|... +.++ |...... ......+.... ....++... . .|
T Consensus 44 p~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a--~g~a~DL~d~a~~~~~~v~i~-~--~~---- 114 (387)
T TIGR01757 44 TVNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEAL--EGVAMELEDSLYPLLREVSIG-I--DP---- 114 (387)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhh--hHHHHHHHHhhhhhcCceEEe-c--CC----
Confidence 4689999999999999999999887543 3333 4433211 11111111111 001122222 2 12
Q ss_pred HHHhcCCCEEEEcCCC-CCCCCchhhhHHHHHHHHHHHHHHHHhcC-CC-EEEEecC
Q 047227 78 LQALQGAEVVFHMAAP-NSSINNHKLHHSVNVEGTKNVIDACAELK-VK-RLIYTSS 131 (485)
Q Consensus 78 ~~~~~~~d~Vih~aa~-~~~~~~~~~~~~~nv~~t~~ll~a~~~~~-v~-r~V~~SS 131 (485)
.+.++++|+||-.||. .....+....+..|+.-.+.+.....++. .. ++|.+|-
T Consensus 115 y~~~kdaDIVVitAG~prkpg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVsN 171 (387)
T TIGR01757 115 YEVFEDADWALLIGAKPRGPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVGN 171 (387)
T ss_pred HHHhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCC
Confidence 3567889999999994 33445677889999999999999999954 33 4555554
|
This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized. |
| >TIGR02355 moeB molybdopterin synthase sulfurylase MoeB | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.053 Score=51.06 Aligned_cols=112 Identities=13% Similarity=0.131 Sum_probs=69.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchh------------hhhhhhc--CCC--eEEEEec
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQG------------ILGEALR--SGR--AHYVSFD 70 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~------------~~~~~~~--~~~--v~~~~~D 70 (485)
+.+|+|.| .|-+|++++..|...|--+++++|...-...+...+.- .....+. .+. ++.+...
T Consensus 24 ~~~VlvvG-~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~inp~v~i~~~~~~ 102 (240)
T TIGR02355 24 ASRVLIVG-LGGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQINPHIAINPINAK 102 (240)
T ss_pred CCcEEEEC-cCHHHHHHHHHHHHcCCCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHCCCcEEEEEecc
Confidence 46899998 78999999999999997789999876432222211100 0011111 233 3344333
Q ss_pred CCCHHHHHHHhcCCCEEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCcccc
Q 047227 71 LRHKAQVLQALQGAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVV 135 (485)
Q Consensus 71 l~d~~~l~~~~~~~d~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy 135 (485)
+ +.+.+.++++++|+||.+.. ++ .....+-++|++.++ .+|+.++...+
T Consensus 103 i-~~~~~~~~~~~~DlVvd~~D------~~--------~~r~~ln~~~~~~~i-p~v~~~~~g~~ 151 (240)
T TIGR02355 103 L-DDAELAALIAEHDIVVDCTD------NV--------EVRNQLNRQCFAAKV-PLVSGAAIRME 151 (240)
T ss_pred C-CHHHHHHHhhcCCEEEEcCC------CH--------HHHHHHHHHHHHcCC-CEEEEEecccE
Confidence 3 34567788899999998763 22 122346688998886 57776655444
|
This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899). |
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.026 Score=58.58 Aligned_cols=100 Identities=15% Similarity=0.185 Sum_probs=68.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhh-cCCCeEEEEecCCCHHHHHHH-hcC
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEAL-RSGRAHYVSFDLRHKAQVLQA-LQG 83 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~-~~~ 83 (485)
.+++|+|.|+ |.+|+.+++.|.+.| +.|+++++.+... .... ...++..+.+|..|++.+.++ +++
T Consensus 230 ~~~~iiIiG~-G~~g~~l~~~L~~~~-~~v~vid~~~~~~----------~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~ 297 (453)
T PRK09496 230 PVKRVMIVGG-GNIGYYLAKLLEKEG-YSVKLIERDPERA----------EELAEELPNTLVLHGDGTDQELLEEEGIDE 297 (453)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCC-CeEEEEECCHHHH----------HHHHHHCCCCeEEECCCCCHHHHHhcCCcc
Confidence 3589999996 999999999999999 5899998765411 1111 124678899999999888665 467
Q ss_pred CCEEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecC
Q 047227 84 AEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSS 131 (485)
Q Consensus 84 ~d~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS 131 (485)
+|+|+-+.. . + ..|.. +...|++.++++++....
T Consensus 298 a~~vi~~~~--~---~-----~~n~~----~~~~~~~~~~~~ii~~~~ 331 (453)
T PRK09496 298 ADAFIALTN--D---D-----EANIL----SSLLAKRLGAKKVIALVN 331 (453)
T ss_pred CCEEEECCC--C---c-----HHHHH----HHHHHHHhCCCeEEEEEC
Confidence 999985443 1 1 33433 333566677766665444
|
|
| >cd05292 LDH_2 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.015 Score=57.09 Aligned_cols=110 Identities=16% Similarity=0.140 Sum_probs=71.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCC-ceEEEeecCCccccCCccchhhhhhhh-cCCCeEEEEecCCCHHHHHHHhcCCC
Q 047227 8 RLCVVTGGRGFAARHLVEMLIRYDM-FSVRIADLSDSIALEPHEEQGILGEAL-RSGRAHYVSFDLRHKAQVLQALQGAE 85 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~~G~-~~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~~~d 85 (485)
|+|.|.|+ |.+|..++..|..+|. .+|.++|+....... .... +.+.. ........ . .|. +.++++|
T Consensus 1 mkI~IIGa-G~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g--~a~d-l~~~~~~~~~~~i~-~--~d~----~~l~~aD 69 (308)
T cd05292 1 MKVAIVGA-GFVGSTTAYALLLRGLASEIVLVDINKAKAEG--EAMD-LAHGTPFVKPVRIY-A--GDY----ADCKGAD 69 (308)
T ss_pred CEEEEECC-CHHHHHHHHHHHHcCCCCEEEEEECCchhhhh--HHHH-HHccccccCCeEEe-e--CCH----HHhCCCC
Confidence 57999996 9999999999999984 479999986542210 0000 11110 01122222 2 232 3478999
Q ss_pred EEEEcCCCC-CCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEE
Q 047227 86 VVFHMAAPN-SSINNHKLHHSVNVEGTKNVIDACAELKVKRLIY 128 (485)
Q Consensus 86 ~Vih~aa~~-~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~ 128 (485)
+||-+++.. ....+.......|+.-.+.+.+..++.+.+-++.
T Consensus 70 iViita~~~~~~~~~r~dl~~~n~~i~~~~~~~l~~~~~~giii 113 (308)
T cd05292 70 VVVITAGANQKPGETRLDLLKRNVAIFKEIIPQILKYAPDAILL 113 (308)
T ss_pred EEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEE
Confidence 999999943 3334566778899999999999998887543343
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.028 Score=55.87 Aligned_cols=91 Identities=11% Similarity=0.153 Sum_probs=54.5
Q ss_pred EEEEEcCCCchHHHHHHHHHhcCCceE--EEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCCCE
Q 047227 9 LCVVTGGRGFAARHLVEMLIRYDMFSV--RIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGAEV 86 (485)
Q Consensus 9 ~iLVtGgtG~iG~~l~~~Ll~~G~~~V--~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~d~ 86 (485)
+|+|.|+||++|..+++.|.+++|..+ ..+.+.++.... +...+.+....|+. .+.++++|+
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~~~g~~-----------~~~~~~~~~~~~~~-----~~~~~~~D~ 64 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASDRSAGRK-----------VTFKGKELEVNEAK-----IESFEGIDI 64 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEeccccCCCe-----------eeeCCeeEEEEeCC-----hHHhcCCCE
Confidence 589999999999999999999886533 333333221100 11123455666664 223578999
Q ss_pred EEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecC
Q 047227 87 VFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSS 131 (485)
Q Consensus 87 Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS 131 (485)
||-+++.. .+..++..+.+.|+ ++|=.|+
T Consensus 65 v~~a~g~~---------------~s~~~a~~~~~~G~-~VID~ss 93 (339)
T TIGR01296 65 ALFSAGGS---------------VSKEFAPKAAKCGA-IVIDNTS 93 (339)
T ss_pred EEECCCHH---------------HHHHHHHHHHHCCC-EEEECCH
Confidence 99887621 12344555555676 4554454
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978. |
| >PRK06223 malate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.028 Score=55.20 Aligned_cols=116 Identities=14% Similarity=0.144 Sum_probs=71.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcC-CCeEEEEecCCCHHHHHHHhcCCC
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRS-GRAHYVSFDLRHKAQVLQALQGAE 85 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~Dl~d~~~l~~~~~~~d 85 (485)
||||.|+|+ |.+|+.++..+...|..+|.++|+...... .....+....... ...+ +... .| . +.++++|
T Consensus 2 ~~KI~VIGa-G~vG~~ia~~la~~~~~ev~L~D~~~~~~~--~~~~dl~~~~~~~~~~~~-i~~~-~d---~-~~~~~aD 72 (307)
T PRK06223 2 RKKISIIGA-GNVGATLAHLLALKELGDVVLFDIVEGVPQ--GKALDIAEAAPVEGFDTK-ITGT-ND---Y-EDIAGSD 72 (307)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCeEEEEEECCCchhH--HHHHHHHhhhhhcCCCcE-EEeC-CC---H-HHHCCCC
Confidence 479999997 999999999999887338999998544211 0000000110000 1111 1111 22 2 3468999
Q ss_pred EEEEcCCCC-CCCCchhhhHHHHHHHHHHHHHHHHhcCCC-EEEEecC
Q 047227 86 VVFHMAAPN-SSINNHKLHHSVNVEGTKNVIDACAELKVK-RLIYTSS 131 (485)
Q Consensus 86 ~Vih~aa~~-~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~-r~V~~SS 131 (485)
+||-+++.. .......+....|..-.+.+++...+...+ .+|.+|-
T Consensus 73 iVii~~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~tN 120 (307)
T PRK06223 73 VVVITAGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVVTN 120 (307)
T ss_pred EEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 999999843 333344566778888888998888887644 3555553
|
|
| >PRK08328 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.061 Score=50.37 Aligned_cols=113 Identities=13% Similarity=0.058 Sum_probs=71.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccc-------hhh----------hhhhhcCCCeEEEEe
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEE-------QGI----------LGEALRSGRAHYVSF 69 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~-------~~~----------~~~~~~~~~v~~~~~ 69 (485)
+.+|+|.| .|-+|++++..|...|.-+++++|...-...+...+ -+. +......-.++.+..
T Consensus 27 ~~~VlIiG-~GGlGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~~k~~~a~~~l~~~np~v~v~~~~~ 105 (231)
T PRK08328 27 KAKVAVVG-VGGLGSPVAYYLAAAGVGRILLIDEQTPELSNLNRQILHWEEDLGKNPKPLSAKWKLERFNSDIKIETFVG 105 (231)
T ss_pred CCcEEEEC-CCHHHHHHHHHHHHcCCCEEEEEcCCccChhhhccccccChhhcCchHHHHHHHHHHHHhCCCCEEEEEec
Confidence 46899998 788999999999999977899998764221111110 000 011111223444445
Q ss_pred cCCCHHHHHHHhcCCCEEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCccccc
Q 047227 70 DLRHKAQVLQALQGAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVVF 136 (485)
Q Consensus 70 Dl~d~~~l~~~~~~~d~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy~ 136 (485)
.+ +.+.+.++++++|+||.+.. ++ ..-..+-++|++.++ .+|+.++.+.||
T Consensus 106 ~~-~~~~~~~~l~~~D~Vid~~d------~~--------~~r~~l~~~~~~~~i-p~i~g~~~g~~G 156 (231)
T PRK08328 106 RL-SEENIDEVLKGVDVIVDCLD------NF--------ETRYLLDDYAHKKGI-PLVHGAVEGTYG 156 (231)
T ss_pred cC-CHHHHHHHHhcCCEEEECCC------CH--------HHHHHHHHHHHHcCC-CEEEEeeccCEE
Confidence 55 44557778899999998763 11 112245578888886 588888776664
|
|
| >PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.0048 Score=60.64 Aligned_cols=35 Identities=20% Similarity=0.284 Sum_probs=31.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCc
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDS 43 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~ 43 (485)
.|+|.|+| +|.+|..++..|.++| ++|++.++.+.
T Consensus 2 ~~~V~VIG-~G~mG~~iA~~la~~G-~~V~v~d~~~~ 36 (308)
T PRK06129 2 MGSVAIIG-AGLIGRAWAIVFARAG-HEVRLWDADPA 36 (308)
T ss_pred CcEEEEEC-ccHHHHHHHHHHHHCC-CeeEEEeCCHH
Confidence 36899998 9999999999999999 59999998754
|
|
| >cd05293 LDH_1 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.087 Score=51.71 Aligned_cols=114 Identities=12% Similarity=0.052 Sum_probs=73.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCc-eEEEeecCCccccCCccchhhhhhhhc-CCCeEEEEecCCCHHHHHHHhcCC
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMF-SVRIADLSDSIALEPHEEQGILGEALR-SGRAHYVSFDLRHKAQVLQALQGA 84 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~-~V~~~~r~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~Dl~d~~~l~~~~~~~ 84 (485)
.+||.|+|+ |.+|+.++..|+..|.. ++.++|...........+ +.+... ......... .|. + .++++
T Consensus 3 ~~Ki~IiGa-G~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~D---l~~~~~~~~~~~v~~~--~dy---~-~~~~a 72 (312)
T cd05293 3 RNKVTVVGV-GQVGMACAISILAKGLADELVLVDVVEDKLKGEAMD---LQHGSAFLKNPKIEAD--KDY---S-VTANS 72 (312)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHH---HHHhhccCCCCEEEEC--CCH---H-HhCCC
Confidence 469999995 99999999999888753 789998765321111001 111110 111222221 233 2 37899
Q ss_pred CEEEEcCCC-CCCCCchhhhHHHHHHHHHHHHHHHHhcCCC-EEEEec
Q 047227 85 EVVFHMAAP-NSSINNHKLHHSVNVEGTKNVIDACAELKVK-RLIYTS 130 (485)
Q Consensus 85 d~Vih~aa~-~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~-r~V~~S 130 (485)
|+||-+||. .....+....+..|+.-.+.+.+..++.+.+ .++.+|
T Consensus 73 divvitaG~~~k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvs 120 (312)
T cd05293 73 KVVIVTAGARQNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVS 120 (312)
T ss_pred CEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEcc
Confidence 999999993 3333456678899999999999999998754 444444
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >KOG1494 consensus NAD-dependent malate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.056 Score=50.71 Aligned_cols=116 Identities=17% Similarity=0.154 Sum_probs=75.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCC-ceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCC
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDM-FSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGA 84 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 84 (485)
.+-+|.|.|+.|-||+.|...|..... .+..++|.........+ +.+...... .....-+++++++++++
T Consensus 27 ~~~KVAvlGAaGGIGQPLSLLlK~np~Vs~LaLYDi~~~~GVaaD-----lSHI~T~s~----V~g~~g~~~L~~al~~a 97 (345)
T KOG1494|consen 27 RGLKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIANTPGVAAD-----LSHINTNSS----VVGFTGADGLENALKGA 97 (345)
T ss_pred CcceEEEEecCCccCccHHHHHhcCcccceeeeeecccCCccccc-----ccccCCCCc----eeccCChhHHHHHhcCC
Confidence 457999999999999999876654431 24555554432111100 111111111 12233356899999999
Q ss_pred CEEEEcCC-CCCCCCchhhhHHHHHHHHHHHHHHHHhcCCC-EEEEec
Q 047227 85 EVVFHMAA-PNSSINNHKLHHSVNVEGTKNVIDACAELKVK-RLIYTS 130 (485)
Q Consensus 85 d~Vih~aa-~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~-r~V~~S 130 (485)
|+|+-=|| +.......+..+.+|..-.+.+..++.++-.+ ++.++|
T Consensus 98 dvVvIPAGVPRKPGMTRDDLFn~NAgIv~~l~~aia~~cP~A~i~vIs 145 (345)
T KOG1494|consen 98 DVVVIPAGVPRKPGMTRDDLFNINAGIVKTLAAAIAKCCPNALILVIS 145 (345)
T ss_pred CEEEecCCCCCCCCCcHHHhhhcchHHHHHHHHHHHhhCccceeEeec
Confidence 99999999 44455566788999999999999999887643 444444
|
|
| >PRK00048 dihydrodipicolinate reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.04 Score=52.54 Aligned_cols=87 Identities=17% Similarity=0.213 Sum_probs=53.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEE-eecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCCC
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRI-ADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGAE 85 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~-~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~d 85 (485)
+|+|.|+|++|.+|+.+++.+.+....++.. +++........ -..++...+++.++++++|
T Consensus 1 ~mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~------------------~~~~i~~~~dl~~ll~~~D 62 (257)
T PRK00048 1 MIKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQ------------------GALGVAITDDLEAVLADAD 62 (257)
T ss_pred CcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCcccccc------------------CCCCccccCCHHHhccCCC
Confidence 3799999999999999999888753245444 55543211000 0112222334666677899
Q ss_pred EEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEE
Q 047227 86 VVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLI 127 (485)
Q Consensus 86 ~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V 127 (485)
+|++++.+ . ....++..|.+.|+ ++|
T Consensus 63 vVid~t~p-------~--------~~~~~~~~al~~G~-~vv 88 (257)
T PRK00048 63 VLIDFTTP-------E--------ATLENLEFALEHGK-PLV 88 (257)
T ss_pred EEEECCCH-------H--------HHHHHHHHHHHcCC-CEE
Confidence 99998742 1 12356777777885 455
|
|
| >PLN02602 lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.1 Score=51.92 Aligned_cols=113 Identities=14% Similarity=0.103 Sum_probs=73.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCc-eEEEeecCCccccCCccchhhhhhhh-cCCCeEEEEecCCCHHHHHHHhcCCC
Q 047227 8 RLCVVTGGRGFAARHLVEMLIRYDMF-SVRIADLSDSIALEPHEEQGILGEAL-RSGRAHYVSFDLRHKAQVLQALQGAE 85 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~~G~~-~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~~~d 85 (485)
+||.|+| +|.+|+.++..|+..|.. ++.++|......... ... +.+.. ..... .+.++ .|. +.++++|
T Consensus 38 ~KI~IIG-aG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~--a~D-L~~~~~~~~~~-~i~~~-~dy----~~~~daD 107 (350)
T PLN02602 38 TKVSVVG-VGNVGMAIAQTILTQDLADELALVDVNPDKLRGE--MLD-LQHAAAFLPRT-KILAS-TDY----AVTAGSD 107 (350)
T ss_pred CEEEEEC-CCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHH--HHH-HHhhhhcCCCC-EEEeC-CCH----HHhCCCC
Confidence 6999999 599999999999988753 799998865321111 111 11111 11122 22221 232 2378999
Q ss_pred EEEEcCCCC-CCCCchhhhHHHHHHHHHHHHHHHHhcCCC-EEEEec
Q 047227 86 VVFHMAAPN-SSINNHKLHHSVNVEGTKNVIDACAELKVK-RLIYTS 130 (485)
Q Consensus 86 ~Vih~aa~~-~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~-r~V~~S 130 (485)
+||-+||.. ....+.......|+.-.+.+.+..++.+.+ .++.+|
T Consensus 108 iVVitAG~~~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvt 154 (350)
T PLN02602 108 LCIVTAGARQIPGESRLNLLQRNVALFRKIIPELAKYSPDTILLIVS 154 (350)
T ss_pred EEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 999999943 333456688899999999999999998744 444444
|
|
| >PLN00112 malate dehydrogenase (NADP); Provisional | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.081 Score=54.13 Aligned_cols=188 Identities=15% Similarity=0.099 Sum_probs=102.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhc-------CCc-eEEEeecCCccccCCccchhhhhhhhc-CCCeEEEEecCCCHHHH
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRY-------DMF-SVRIADLSDSIALEPHEEQGILGEALR-SGRAHYVSFDLRHKAQV 77 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~-------G~~-~V~~~~r~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~Dl~d~~~l 77 (485)
.-+|.|+|++|.+|++++..|... |.. ++.++|+........ ...+...... ..++.+. . .|
T Consensus 100 ~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~--amDL~daa~~~~~~v~i~-~--~~---- 170 (444)
T PLN00112 100 LINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGV--AMELEDSLYPLLREVSIG-I--DP---- 170 (444)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHH--HHHHHHhhhhhcCceEEe-c--CC----
Confidence 458999999999999999999987 532 577777765422111 1111111100 1122211 2 23
Q ss_pred HHHhcCCCEEEEcCCC-CCCCCchhhhHHHHHHHHHHHHHHHHh-cCCC-EEEEecCccccccCCCCcCCCCCCCCCCCC
Q 047227 78 LQALQGAEVVFHMAAP-NSSINNHKLHHSVNVEGTKNVIDACAE-LKVK-RLIYTSSPSVVFDGVHGIINGNEALPYPPK 154 (485)
Q Consensus 78 ~~~~~~~d~Vih~aa~-~~~~~~~~~~~~~nv~~t~~ll~a~~~-~~v~-r~V~~SS~~vy~~~~~~~~~~~e~~~~~~~ 154 (485)
.+.++++|+||-.||. .....+.....+.|+.-.+.+.....+ ++.. .+|.+|-+.=.- .... ...+ +.+.
T Consensus 171 ye~~kdaDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVsNPvDv~---t~v~-~k~s-g~~~- 244 (444)
T PLN00112 171 YEVFQDAEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVGNPCNTN---ALIC-LKNA-PNIP- 244 (444)
T ss_pred HHHhCcCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcCCcHHHH---HHHH-HHHc-CCCC-
Confidence 3567889999999994 444456778899999999999999999 5643 455555422000 0000 0000 0000
Q ss_pred CCchHHHHHHHHHHHHHHHhCCCCceEEEEecCCcccCCCCCChHHHHHHHHcCC
Q 047227 155 HNDFYSATKAEGEALVIKANGTNGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGK 209 (485)
Q Consensus 155 ~~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~ 209 (485)
....=+.+....-++-...+++.+++...++-.+|+|.+.+..++.|-..-..|.
T Consensus 245 ~rViGtgT~LDsaR~r~~LA~~l~V~~~~V~~~~V~GeHGdsqvp~wS~a~V~G~ 299 (444)
T PLN00112 245 AKNFHALTRLDENRAKCQLALKAGVFYDKVSNVTIWGNHSTTQVPDFLNAKINGL 299 (444)
T ss_pred cceEEeeccHHHHHHHHHHHHHhCcCHHHcccceEEecCCCceeeccceeEECCc
Confidence 0111111112222222223334677777777778899876655555544333443
|
|
| >KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.022 Score=62.80 Aligned_cols=163 Identities=17% Similarity=0.140 Sum_probs=107.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEE--EEecCCCHHHHHHHhcC-
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHY--VSFDLRHKAQVLQALQG- 83 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~--~~~Dl~d~~~l~~~~~~- 83 (485)
.+..+|+||-|-.|-.++.+|+.+|.-.+++..|+.-+ ... .......+...++.+ -.-|++..+.-.++++.
T Consensus 1768 eksYii~GGLGGFGLELaqWLi~RGar~lVLtSRsGir---tGY-Qa~~vrrWr~~GVqV~vsT~nitt~~ga~~Li~~s 1843 (2376)
T KOG1202|consen 1768 EKSYIIVGGLGGFGLELAQWLIQRGARKLVLTSRSGIR---TGY-QALMVRRWRRRGVQVQVSTSNITTAEGARGLIEES 1843 (2376)
T ss_pred cceEEEeccccchhHHHHHHHHhcCceEEEEeccccch---hhH-HHHHHHHHHhcCeEEEEecccchhhhhHHHHHHHh
Confidence 47899999999999999999999995455555554321 111 111222333445544 34577766666666653
Q ss_pred -----CCEEEEcCCCC-------CCCCchhhhHHHHHHHHHHHHHHHHhcC--CCEEEEecCccccccCCCCcCCCCCCC
Q 047227 84 -----AEVVFHMAAPN-------SSINNHKLHHSVNVEGTKNVIDACAELK--VKRLIYTSSPSVVFDGVHGIINGNEAL 149 (485)
Q Consensus 84 -----~d~Vih~aa~~-------~~~~~~~~~~~~nv~~t~~ll~a~~~~~--v~r~V~~SS~~vy~~~~~~~~~~~e~~ 149 (485)
+--|||+|++. ....+....-+.-..||.|+=...++.- .+-||.+||.+- |.
T Consensus 1844 ~kl~~vGGiFnLA~VLRD~LiEnQt~knFk~va~pK~~~Ti~LD~~sRe~C~~LdyFv~FSSvsc-GR------------ 1910 (2376)
T KOG1202|consen 1844 NKLGPVGGIFNLAAVLRDGLIENQTPKNFKDVAKPKYSGTINLDRVSREICPELDYFVVFSSVSC-GR------------ 1910 (2376)
T ss_pred hhcccccchhhHHHHHHhhhhcccChhHHHhhhccceeeeeehhhhhhhhCcccceEEEEEeecc-cC------------
Confidence 56799999931 1223444444556778888877777664 578999998643 21
Q ss_pred CCCCCCCchHHHHHHHHHHHHHHHhCCCCceEEEEecCCc
Q 047227 150 PYPPKHNDFYSATKAEGEALVIKANGTNGLLTCCIRPSSI 189 (485)
Q Consensus 150 ~~~~~~~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v 189 (485)
.....+.||.+-...|+++.+-. .+|++-+.+.=|.|
T Consensus 1911 --GN~GQtNYG~aNS~MERiceqRr-~~GfPG~AiQWGAI 1947 (2376)
T KOG1202|consen 1911 --GNAGQTNYGLANSAMERICEQRR-HEGFPGTAIQWGAI 1947 (2376)
T ss_pred --CCCcccccchhhHHHHHHHHHhh-hcCCCcceeeeecc
Confidence 13567789999999999998754 46787777776654
|
|
| >PRK08057 cobalt-precorrin-6x reductase; Reviewed | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.064 Score=50.65 Aligned_cols=94 Identities=16% Similarity=0.146 Sum_probs=68.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc--CC
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ--GA 84 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--~~ 84 (485)
+++|||.||| .=|+.+++.|.++| +.|.+..-..... .....+..+.+-+.|.+.+.+.++ ++
T Consensus 2 ~~~IlvlgGT-~egr~la~~L~~~g-~~v~~Svat~~g~-------------~~~~~~~v~~G~l~~~~~l~~~l~~~~i 66 (248)
T PRK08057 2 MPRILLLGGT-SEARALARALAAAG-VDIVLSLAGRTGG-------------PADLPGPVRVGGFGGAEGLAAYLREEGI 66 (248)
T ss_pred CceEEEEech-HHHHHHHHHHHhCC-CeEEEEEccCCCC-------------cccCCceEEECCCCCHHHHHHHHHHCCC
Confidence 4789999999 57999999999999 5555443322100 123467788888889999999996 59
Q ss_pred CEEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEE
Q 047227 85 EVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLI 127 (485)
Q Consensus 85 d~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V 127 (485)
++||+..-|.. ..-+.|+.++|++.++.-+=
T Consensus 67 ~~VIDATHPfA------------~~is~~a~~ac~~~~ipyiR 97 (248)
T PRK08057 67 DLVIDATHPYA------------AQISANAAAACRALGIPYLR 97 (248)
T ss_pred CEEEECCCccH------------HHHHHHHHHHHHHhCCcEEE
Confidence 99998765321 24467899999999975433
|
|
| >cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2 | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.068 Score=52.19 Aligned_cols=112 Identities=14% Similarity=0.141 Sum_probs=71.7
Q ss_pred EEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccch----------------hhhhhhhcCCCeEEEEecCC
Q 047227 9 LCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQ----------------GILGEALRSGRAHYVSFDLR 72 (485)
Q Consensus 9 ~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~----------------~~~~~~~~~~~v~~~~~Dl~ 72 (485)
+|||.| .|-+|.++++.|...|--.++++|...-...+...+. ..+......-.++.+..++.
T Consensus 1 kVlIVG-aGGlG~EiaKnLal~Gvg~ItIvD~D~Ve~sNLnRQflf~~~dVGk~Kaevaa~~l~~lNp~v~V~~~~~~i~ 79 (312)
T cd01489 1 KVLVVG-AGGIGCELLKNLVLTGFGEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSFNPNVKIVAYHANIK 79 (312)
T ss_pred CEEEEC-CCHHHHHHHHHHHHhcCCeEEEEcCCCcchhhcCcCccCChhHcCcHHHHHHHHHHHHHCCCCeEEEEeccCC
Confidence 589998 6899999999999999778999987643222111110 00111111234556667777
Q ss_pred CHHHHHHHhcCCCEEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCccccc
Q 047227 73 HKAQVLQALQGAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVVF 136 (485)
Q Consensus 73 d~~~l~~~~~~~d~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy~ 136 (485)
+.....+.++++|+||.+.. |...-..+-+.|++.++ .+|...+.+.+|
T Consensus 80 ~~~~~~~f~~~~DvVv~a~D--------------n~~ar~~in~~c~~~~i-p~I~~gt~G~~G 128 (312)
T cd01489 80 DPDFNVEFFKQFDLVFNALD--------------NLAARRHVNKMCLAADV-PLIESGTTGFLG 128 (312)
T ss_pred CccchHHHHhcCCEEEECCC--------------CHHHHHHHHHHHHHCCC-CEEEEecCccee
Confidence 64434567789999997653 22333457788888886 588877766554
|
UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2. |
| >PRK08223 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.072 Score=51.17 Aligned_cols=112 Identities=16% Similarity=0.172 Sum_probs=68.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchh------------hhhhhhc--CCC--eEEEEec
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQG------------ILGEALR--SGR--AHYVSFD 70 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~------------~~~~~~~--~~~--v~~~~~D 70 (485)
+.+|+|.| .|-+|++++..|...|--+++++|.+.-...+...+.. .....+. .+. ++.+...
T Consensus 27 ~s~VlIvG-~GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iNP~v~V~~~~~~ 105 (287)
T PRK08223 27 NSRVAIAG-LGGVGGIHLLTLARLGIGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDINPELEIRAFPEG 105 (287)
T ss_pred cCCEEEEC-CCHHHHHHHHHHHHhCCCeEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHCCCCEEEEEecc
Confidence 46899998 78899999999999997789999876432111111100 0011111 343 4444444
Q ss_pred CCCHHHHHHHhcCCCEEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCcc
Q 047227 71 LRHKAQVLQALQGAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPS 133 (485)
Q Consensus 71 l~d~~~l~~~~~~~d~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~ 133 (485)
++ ++...++++++|+|+++.- ++ +...-..+-++|++.++ .+|+.|...
T Consensus 106 l~-~~n~~~ll~~~DlVvD~~D------~~------~~~~r~~ln~~c~~~~i-P~V~~~~~g 154 (287)
T PRK08223 106 IG-KENADAFLDGVDVYVDGLD------FF------EFDARRLVFAACQQRGI-PALTAAPLG 154 (287)
T ss_pred cC-ccCHHHHHhCCCEEEECCC------CC------cHHHHHHHHHHHHHcCC-CEEEEeccC
Confidence 54 3456778899999996542 11 11222457788999986 578776543
|
|
| >TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.047 Score=53.47 Aligned_cols=116 Identities=14% Similarity=0.104 Sum_probs=71.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCCCEE
Q 047227 8 RLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGAEVV 87 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~d~V 87 (485)
|+|.|.| +|++|..++..|..+|+.+|+++|....... ..................+.. -.| +.+ ++++|.|
T Consensus 2 ~KV~VIG-aG~vG~~iA~~la~~g~~~VvlvDi~~~l~~--g~a~d~~~~~~~~~~~~~i~~-t~d---~~~-~~~aDiV 73 (305)
T TIGR01763 2 KKISVIG-AGFVGATTAFRLAEKELADLVLLDVVEGIPQ--GKALDMYEASPVGGFDTKVTG-TNN---YAD-TANSDIV 73 (305)
T ss_pred CEEEEEC-cCHHHHHHHHHHHHcCCCeEEEEeCCCChhH--HHHHhhhhhhhccCCCcEEEe-cCC---HHH-hCCCCEE
Confidence 6899999 5999999999999988547999998533111 010001111110000011211 022 333 5889999
Q ss_pred EEcCCCCC-CCCchhhhHHHHHHHHHHHHHHHHhcCCC-EEEEecC
Q 047227 88 FHMAAPNS-SINNHKLHHSVNVEGTKNVIDACAELKVK-RLIYTSS 131 (485)
Q Consensus 88 ih~aa~~~-~~~~~~~~~~~nv~~t~~ll~a~~~~~v~-r~V~~SS 131 (485)
|-+++... ...........|..-...+++...+.+.+ .+|.+|-
T Consensus 74 Iitag~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tN 119 (305)
T TIGR01763 74 VITAGLPRKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSN 119 (305)
T ss_pred EEcCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 99999433 33345567889999999999998887643 4555443
|
The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable. |
| >cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.082 Score=50.62 Aligned_cols=108 Identities=16% Similarity=0.072 Sum_probs=70.3
Q ss_pred EEEEcCCCchHHHHHHHHHhcC--C-ceEEEeecCCccccCCccchhhhhhhhcCC-CeEEEEecCCCHHHHHHHhcCCC
Q 047227 10 CVVTGGRGFAARHLVEMLIRYD--M-FSVRIADLSDSIALEPHEEQGILGEALRSG-RAHYVSFDLRHKAQVLQALQGAE 85 (485)
Q Consensus 10 iLVtGgtG~iG~~l~~~Ll~~G--~-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~Dl~d~~~l~~~~~~~d 85 (485)
|.|+|++|.+|..++..|+..| . .+|.++|...........+ +.+..... ..++... + +..+.++++|
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~d---l~~~~~~~~~~~i~~~---~--d~~~~~~~aD 72 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMD---LQDAVEPLADIKVSIT---D--DPYEAFKDAD 72 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHH---HHHhhhhccCcEEEEC---C--chHHHhCCCC
Confidence 4689998999999999999887 2 3899999865322111111 12211111 1222211 1 2466789999
Q ss_pred EEEEcCCCCC-CCCchhhhHHHHHHHHHHHHHHHHhcCCCE
Q 047227 86 VVFHMAAPNS-SINNHKLHHSVNVEGTKNVIDACAELKVKR 125 (485)
Q Consensus 86 ~Vih~aa~~~-~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r 125 (485)
.||-.++... ...........|+.-.+.+.+..++...+-
T Consensus 73 iVv~t~~~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a 113 (263)
T cd00650 73 VVIITAGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKYSPDA 113 (263)
T ss_pred EEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCe
Confidence 9999998433 333455678889999999999999887443
|
Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains |
| >PRK08762 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.041 Score=55.66 Aligned_cols=113 Identities=19% Similarity=0.114 Sum_probs=69.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCcc------------chhhhhhhhc--CCCe--EEEEe
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHE------------EQGILGEALR--SGRA--HYVSF 69 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~------------~~~~~~~~~~--~~~v--~~~~~ 69 (485)
...+|+|.| .|-+|++++..|...|.-+++++|+..-...+... +.......+. .+.+ +.+..
T Consensus 134 ~~~~VlvvG-~GG~Gs~ia~~La~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~v~~~~~ 212 (376)
T PRK08762 134 LEARVLLIG-AGGLGSPAALYLAAAGVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALNPDVQVEAVQE 212 (376)
T ss_pred hcCcEEEEC-CCHHHHHHHHHHHHcCCCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHCCCCEEEEEec
Confidence 356899997 68899999999999996689999987321111110 0000111111 2333 34444
Q ss_pred cCCCHHHHHHHhcCCCEEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCcccc
Q 047227 70 DLRHKAQVLQALQGAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVV 135 (485)
Q Consensus 70 Dl~d~~~l~~~~~~~d~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy 135 (485)
.+. .+.+.++++++|+||++.. ++. .-..+-++|++.++ .+|+.+....+
T Consensus 213 ~~~-~~~~~~~~~~~D~Vv~~~d------~~~--------~r~~ln~~~~~~~i-p~i~~~~~g~~ 262 (376)
T PRK08762 213 RVT-SDNVEALLQDVDVVVDGAD------NFP--------TRYLLNDACVKLGK-PLVYGAVFRFE 262 (376)
T ss_pred cCC-hHHHHHHHhCCCEEEECCC------CHH--------HHHHHHHHHHHcCC-CEEEEEeccCE
Confidence 443 3567778899999998864 211 11246788999886 68887764433
|
|
| >PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.053 Score=51.26 Aligned_cols=93 Identities=26% Similarity=0.298 Sum_probs=65.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhh--cCCCeEEEEecCCCHHHHHHHhc--C
Q 047227 8 RLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEAL--RSGRAHYVSFDLRHKAQVLQALQ--G 83 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~Dl~d~~~l~~~~~--~ 83 (485)
|+|||.||| .=|+.+++.|.++|+..+.++..-.. ... ..+......+-+.|.+++.+.++ +
T Consensus 1 m~ILvlgGT-tE~r~la~~L~~~g~v~~sv~t~~g~-------------~~~~~~~~~~~v~~G~lg~~~~l~~~l~~~~ 66 (249)
T PF02571_consen 1 MKILVLGGT-TEGRKLAERLAEAGYVIVSVATSYGG-------------ELLKPELPGLEVRVGRLGDEEGLAEFLRENG 66 (249)
T ss_pred CEEEEEech-HHHHHHHHHHHhcCCEEEEEEhhhhH-------------hhhccccCCceEEECCCCCHHHHHHHHHhCC
Confidence 799999999 57999999999999411222221111 111 12456778888889999999995 6
Q ss_pred CCEEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEE
Q 047227 84 AEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRL 126 (485)
Q Consensus 84 ~d~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~ 126 (485)
++.||+..-|.. .+-+.|+.++|++.|+.-+
T Consensus 67 i~~vIDATHPfA------------~~is~na~~a~~~~~ipyl 97 (249)
T PF02571_consen 67 IDAVIDATHPFA------------AEISQNAIEACRELGIPYL 97 (249)
T ss_pred CcEEEECCCchH------------HHHHHHHHHHHhhcCcceE
Confidence 999998765321 2456799999999997533
|
Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process |
| >PRK05597 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.095 Score=52.49 Aligned_cols=113 Identities=15% Similarity=0.063 Sum_probs=70.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccch----------------hhhhhhhcCCCeEEEEe
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQ----------------GILGEALRSGRAHYVSF 69 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~----------------~~~~~~~~~~~v~~~~~ 69 (485)
.+.+|+|.| .|-+|+++++.|...|--+++++|...-...+...+. ..+......-+++.+..
T Consensus 27 ~~~~VlivG-~GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~v~~~~~ 105 (355)
T PRK05597 27 FDAKVAVIG-AGGLGSPALLYLAGAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNPDVKVTVSVR 105 (355)
T ss_pred hCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCCCcEEEEEEe
Confidence 356899998 6899999999999999778999988642211111110 00111111223444445
Q ss_pred cCCCHHHHHHHhcCCCEEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCcccc
Q 047227 70 DLRHKAQVLQALQGAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVV 135 (485)
Q Consensus 70 Dl~d~~~l~~~~~~~d~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy 135 (485)
.++ .+...+.++++|+||.+.. ++ ..-..+-++|.+.++ .+|+.++.+.+
T Consensus 106 ~i~-~~~~~~~~~~~DvVvd~~d------~~--------~~r~~~n~~c~~~~i-p~v~~~~~g~~ 155 (355)
T PRK05597 106 RLT-WSNALDELRDADVILDGSD------NF--------DTRHLASWAAARLGI-PHVWASILGFD 155 (355)
T ss_pred ecC-HHHHHHHHhCCCEEEECCC------CH--------HHHHHHHHHHHHcCC-CEEEEEEecCe
Confidence 554 4456778899999998763 21 122236678888886 58887765544
|
|
| >cd01487 E1_ThiF_like E1_ThiF_like | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.058 Score=48.13 Aligned_cols=110 Identities=9% Similarity=0.081 Sum_probs=65.5
Q ss_pred EEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccc-----------h----hhhhhhhcCCCeEEEEecCCC
Q 047227 9 LCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEE-----------Q----GILGEALRSGRAHYVSFDLRH 73 (485)
Q Consensus 9 ~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~-----------~----~~~~~~~~~~~v~~~~~Dl~d 73 (485)
+|+|.| .|-+|++++..|...|.-+++++|...-...+...+ . ..+......-+++.+...+.+
T Consensus 1 ~VlViG-~GglGs~ia~~La~~Gvg~i~lvD~D~v~~sNl~Rq~~~~~~vg~~Ka~~~~~~l~~lnp~v~i~~~~~~~~~ 79 (174)
T cd01487 1 KVGIAG-AGGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQYFLSQIGEPKVEALKENLREINPFVKIEAINIKIDE 79 (174)
T ss_pred CEEEEC-cCHHHHHHHHHHHHcCCCeEEEEeCCEEcCcchhcccccHhhCCChHHHHHHHHHHHHCCCCEEEEEEeecCh
Confidence 488998 789999999999999966799999875211111100 0 001111112244445555544
Q ss_pred HHHHHHHhcCCCEEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhc-CCCEEEEecCcccc
Q 047227 74 KAQVLQALQGAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAEL-KVKRLIYTSSPSVV 135 (485)
Q Consensus 74 ~~~l~~~~~~~d~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~-~v~r~V~~SS~~vy 135 (485)
+.+.+.++++|+||.+.. ++. .-..+.+.|.+. ++ .+|+.+...-|
T Consensus 80 -~~~~~~l~~~DlVi~~~d------~~~--------~r~~i~~~~~~~~~i-p~i~~~~~~~~ 126 (174)
T cd01487 80 -NNLEGLFGDCDIVVEAFD------NAE--------TKAMLAESLLGNKNK-PVVCASGMAGF 126 (174)
T ss_pred -hhHHHHhcCCCEEEECCC------CHH--------HHHHHHHHHHHHCCC-CEEEEehhhcc
Confidence 557788899999998743 111 113466666666 64 57776544444
|
Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >PRK05600 thiamine biosynthesis protein ThiF; Validated | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.11 Score=52.18 Aligned_cols=113 Identities=15% Similarity=0.153 Sum_probs=70.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccch------------hhhhhhhc--CC--CeEEEEe
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQ------------GILGEALR--SG--RAHYVSF 69 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~------------~~~~~~~~--~~--~v~~~~~ 69 (485)
.+.+|+|.| .|-+|++++..|...|--+++++|...-...+...+. ......+. .+ +++.+..
T Consensus 40 ~~~~VliiG-~GglG~~v~~~La~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~~ 118 (370)
T PRK05600 40 HNARVLVIG-AGGLGCPAMQSLASAGVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQPDIRVNALRE 118 (370)
T ss_pred cCCcEEEEC-CCHHHHHHHHHHHHcCCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHCCCCeeEEeee
Confidence 356899998 7889999999999999668999988632111111110 00011111 23 3445555
Q ss_pred cCCCHHHHHHHhcCCCEEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCcccc
Q 047227 70 DLRHKAQVLQALQGAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVV 135 (485)
Q Consensus 70 Dl~d~~~l~~~~~~~d~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy 135 (485)
.++ .+...++++++|+||.+.. + ...-..+-++|.+.++ .+|+.+...-+
T Consensus 119 ~i~-~~~~~~~~~~~DlVid~~D------n--------~~~r~~in~~~~~~~i-P~v~~~~~g~~ 168 (370)
T PRK05600 119 RLT-AENAVELLNGVDLVLDGSD------S--------FATKFLVADAAEITGT-PLVWGTVLRFH 168 (370)
T ss_pred ecC-HHHHHHHHhCCCEEEECCC------C--------HHHHHHHHHHHHHcCC-CEEEEEEecCE
Confidence 554 4567788999999998764 2 2222345677888886 47777764443
|
|
| >cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.18 Score=47.10 Aligned_cols=108 Identities=16% Similarity=0.183 Sum_probs=65.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccch------------hhhhhhhc--CC--CeEEEEec
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQ------------GILGEALR--SG--RAHYVSFD 70 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~------------~~~~~~~~--~~--~v~~~~~D 70 (485)
+.+|+|.| .|-+|+++++.|...|--+++++|...-...+...+. ....+.+. .+ +++.+...
T Consensus 11 ~~~VlVvG-~GGvGs~va~~Lar~GVg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP~~~V~~~~~~ 89 (231)
T cd00755 11 NAHVAVVG-LGGVGSWAAEALARSGVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPECEVDAVEEF 89 (231)
T ss_pred CCCEEEEC-CCHHHHHHHHHHHHcCCCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCCCcEEEEeeee
Confidence 46899998 8899999999999999768999987642111111110 00011111 23 34444444
Q ss_pred CCCHHHHHHHhc-CCCEEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecC
Q 047227 71 LRHKAQVLQALQ-GAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSS 131 (485)
Q Consensus 71 l~d~~~l~~~~~-~~d~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS 131 (485)
++ ++...+++. ++|+||.+.. + ...-..+.+.|++.++ .+|...+
T Consensus 90 i~-~~~~~~l~~~~~D~VvdaiD------~--------~~~k~~L~~~c~~~~i-p~I~s~g 135 (231)
T cd00755 90 LT-PDNSEDLLGGDPDFVVDAID------S--------IRAKVALIAYCRKRKI-PVISSMG 135 (231)
T ss_pred cC-HhHHHHHhcCCCCEEEEcCC------C--------HHHHHHHHHHHHHhCC-CEEEEeC
Confidence 44 345566664 6999998763 1 1223467899999886 4665544
|
coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >PRK15116 sulfur acceptor protein CsdL; Provisional | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.26 Score=47.05 Aligned_cols=112 Identities=18% Similarity=0.263 Sum_probs=67.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchh------------hhhhhhc--CCCeEEEEe-c
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQG------------ILGEALR--SGRAHYVSF-D 70 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~------------~~~~~~~--~~~v~~~~~-D 70 (485)
.+.+|+|.| .|-+|+++++.|...|--+++++|...-...+...+.. ...+.+. .+.++.... +
T Consensus 29 ~~s~VlVvG-~GGVGs~vae~Lar~GVg~itLiD~D~V~~sNlnRQ~~~~~~~vG~~Kve~~~~rl~~INP~~~V~~i~~ 107 (268)
T PRK15116 29 ADAHICVVG-IGGVGSWAAEALARTGIGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQINPECRVTVVDD 107 (268)
T ss_pred cCCCEEEEC-cCHHHHHHHHHHHHcCCCEEEEEeCCEecccccccccccChhhcChHHHHHHHHHHHhHCCCcEEEEEec
Confidence 356899997 88999999999999996689999876332222111100 0111111 233333222 2
Q ss_pred CCCHHHHHHHhc-CCCEEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCcc
Q 047227 71 LRHKAQVLQALQ-GAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPS 133 (485)
Q Consensus 71 l~d~~~l~~~~~-~~d~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~ 133 (485)
..+++...+++. ++|+||.+... +..-..+.+.|++.++ .+|.+..++
T Consensus 108 ~i~~e~~~~ll~~~~D~VIdaiD~--------------~~~k~~L~~~c~~~~i-p~I~~gGag 156 (268)
T PRK15116 108 FITPDNVAEYMSAGFSYVIDAIDS--------------VRPKAALIAYCRRNKI-PLVTTGGAG 156 (268)
T ss_pred ccChhhHHHHhcCCCCEEEEcCCC--------------HHHHHHHHHHHHHcCC-CEEEECCcc
Confidence 334556667765 69999987641 1222358889999886 566555443
|
|
| >PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.14 Score=52.01 Aligned_cols=113 Identities=12% Similarity=0.066 Sum_probs=70.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccch-------h-----hhhhhhc--CCC--eEEEEec
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQ-------G-----ILGEALR--SGR--AHYVSFD 70 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~-------~-----~~~~~~~--~~~--v~~~~~D 70 (485)
..+|||.| .|-+|++++..|...|.-+++++|...-...+...+. + .....+. .+. ++.+...
T Consensus 42 ~~~VlviG-~GGlGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~ 120 (392)
T PRK07878 42 NARVLVIG-AGGLGSPTLLYLAAAGVGTLGIVEFDVVDESNLQRQVIHGQSDVGRSKAQSARDSIVEINPLVNVRLHEFR 120 (392)
T ss_pred cCCEEEEC-CCHHHHHHHHHHHHcCCCeEEEECCCEecCcccccccccChhcCCChHHHHHHHHHHHhCCCcEEEEEecc
Confidence 46899998 7889999999999999668999987632211111110 0 0011111 233 4445555
Q ss_pred CCCHHHHHHHhcCCCEEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCccccc
Q 047227 71 LRHKAQVLQALQGAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVVF 136 (485)
Q Consensus 71 l~d~~~l~~~~~~~d~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy~ 136 (485)
+.. +...++++++|+||.+.. + ...-..+-++|++.++ .||+.+....+|
T Consensus 121 i~~-~~~~~~~~~~D~Vvd~~d------~--------~~~r~~ln~~~~~~~~-p~v~~~~~g~~G 170 (392)
T PRK07878 121 LDP-SNAVELFSQYDLILDGTD------N--------FATRYLVNDAAVLAGK-PYVWGSIYRFEG 170 (392)
T ss_pred CCh-hHHHHHHhcCCEEEECCC------C--------HHHHHHHHHHHHHcCC-CEEEEEeccCEE
Confidence 543 456778899999998753 1 1122246688888885 588887766654
|
|
| >TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.13 Score=51.17 Aligned_cols=31 Identities=19% Similarity=0.379 Sum_probs=26.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCceEEEe
Q 047227 8 RLCVVTGGRGFAARHLVEMLIRYDMFSVRIA 38 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~ 38 (485)
++|.|+|+||++|+++++.|.+++..++..+
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~~~~~l~~v 31 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKHPYFELAKV 31 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCceEEEE
Confidence 5899999999999999999988775566666
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan. |
| >cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.2 Score=46.93 Aligned_cols=112 Identities=11% Similarity=0.068 Sum_probs=70.1
Q ss_pred EEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccc-------hh---------hhhhhhcCCCeEEEEecCC
Q 047227 9 LCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEE-------QG---------ILGEALRSGRAHYVSFDLR 72 (485)
Q Consensus 9 ~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~-------~~---------~~~~~~~~~~v~~~~~Dl~ 72 (485)
+|||.| .|-+|.++++.|...|--+++++|.+.-...+...+ -+ .+......-+++.+..++.
T Consensus 1 kVlvvG-~GGlG~eilk~La~~Gvg~i~ivD~D~Ve~sNLnRQflf~~~dvGk~Ka~va~~~l~~~np~v~i~~~~~~i~ 79 (234)
T cd01484 1 KVLLVG-AGGIGCELLKNLALMGFGQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDRNPNCKVVPYQNKVG 79 (234)
T ss_pred CEEEEC-CCHHHHHHHHHHHHcCCCeEEEEeCCEEcchhhccccCCChhhCChHHHHHHHHHHHHHCCCCEEEEEeccCC
Confidence 488887 889999999999999976899998763221111111 00 0111111234556667775
Q ss_pred CHHHH-HHHhcCCCEEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCccccc
Q 047227 73 HKAQV-LQALQGAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVVF 136 (485)
Q Consensus 73 d~~~l-~~~~~~~d~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy~ 136 (485)
+.+.. .+.++++|+||.+.. |...-+.+-+.|.+.++ .+|..++.+-+|
T Consensus 80 ~~~~~~~~f~~~~DvVi~a~D--------------n~~aR~~ln~~c~~~~i-plI~~g~~G~~G 129 (234)
T cd01484 80 PEQDFNDTFFEQFHIIVNALD--------------NIIARRYVNGMLIFLIV-PLIESGTEGFKG 129 (234)
T ss_pred hhhhchHHHHhCCCEEEECCC--------------CHHHHHHHHHHHHHcCC-CEEEEcccCCce
Confidence 54333 456788999997653 23334567788888885 588877755443
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou |
| >PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.14 Score=51.14 Aligned_cols=94 Identities=13% Similarity=0.085 Sum_probs=54.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCce---EEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCC
Q 047227 8 RLCVVTGGRGFAARHLVEMLIRYDMFS---VRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGA 84 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~~G~~~---V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 84 (485)
++|.|.|+||++|+.+++.|+++.+.. ++.+....+ .... ..+.. -.....++.|.+. ++++
T Consensus 2 ~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~~ss~~s--g~~~-------~~f~g--~~~~v~~~~~~~~----~~~~ 66 (369)
T PRK06598 2 KKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVFFSTSQA--GGAA-------PSFGG--KEGTLQDAFDIDA----LKKL 66 (369)
T ss_pred eEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEEecchhh--CCcc-------cccCC--CcceEEecCChhH----hcCC
Confidence 689999999999999999777765454 555433211 0000 00111 1223334444433 4679
Q ss_pred CEEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCC-EEEEecC
Q 047227 85 EVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVK-RLIYTSS 131 (485)
Q Consensus 85 d~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~-r~V~~SS 131 (485)
|+||-+++. ..+..+...+.+.|++ .+|=.||
T Consensus 67 Divf~a~~~---------------~~s~~~~~~~~~aG~~~~VID~Ss 99 (369)
T PRK06598 67 DIIITCQGG---------------DYTNEVYPKLRAAGWQGYWIDAAS 99 (369)
T ss_pred CEEEECCCH---------------HHHHHHHHHHHhCCCCeEEEECCh
Confidence 999987751 1234566666677863 3444444
|
|
| >PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.054 Score=54.76 Aligned_cols=67 Identities=15% Similarity=0.155 Sum_probs=51.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCCCE
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGAEV 86 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~d~ 86 (485)
+|+|+|.|| |.+|+.++..+.+.| ++|.+++..+.... . .---.++.+|..|.+.+.++.+.+|+
T Consensus 2 ~~~igilG~-Gql~~ml~~aa~~lG-~~v~~~d~~~~~pa---~----------~~ad~~~~~~~~D~~~l~~~a~~~dv 66 (372)
T PRK06019 2 MKTIGIIGG-GQLGRMLALAAAPLG-YKVIVLDPDPDSPA---A----------QVADEVIVADYDDVAALRELAEQCDV 66 (372)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHcC-CEEEEEeCCCCCch---h----------HhCceEEecCCCCHHHHHHHHhcCCE
Confidence 478999996 899999999999999 68998887543110 0 00124667899999999999999998
Q ss_pred EE
Q 047227 87 VF 88 (485)
Q Consensus 87 Vi 88 (485)
|.
T Consensus 67 it 68 (372)
T PRK06019 67 IT 68 (372)
T ss_pred EE
Confidence 75
|
|
| >PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.11 Score=50.83 Aligned_cols=32 Identities=13% Similarity=0.105 Sum_probs=26.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEe
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIA 38 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~ 38 (485)
+++|.|.|+||++|..+++.|.++.+.++..+
T Consensus 2 ~~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~ 33 (313)
T PRK11863 2 KPKVFIDGEAGTTGLQIRERLAGRSDIELLSI 33 (313)
T ss_pred CcEEEEECCCCHHHHHHHHHHhcCCCeEEEEE
Confidence 47999999999999999999998874344433
|
|
| >cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.037 Score=48.12 Aligned_cols=77 Identities=16% Similarity=0.145 Sum_probs=49.0
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCC
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGA 84 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 84 (485)
.++++++|+|+ |.+|+.+++.|.+.|...|.+.+|....... +...+ +...+..+..+. .++++++
T Consensus 17 ~~~~~i~iiG~-G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~-------~~~~~---~~~~~~~~~~~~---~~~~~~~ 82 (155)
T cd01065 17 LKGKKVLILGA-GGAARAVAYALAELGAAKIVIVNRTLEKAKA-------LAERF---GELGIAIAYLDL---EELLAEA 82 (155)
T ss_pred CCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEcCCHHHHHH-------HHHHH---hhcccceeecch---hhccccC
Confidence 34689999996 9999999999999863589999886442111 11111 111112233333 3447889
Q ss_pred CEEEEcCCCCC
Q 047227 85 EVVFHMAAPNS 95 (485)
Q Consensus 85 d~Vih~aa~~~ 95 (485)
|+||.+.....
T Consensus 83 Dvvi~~~~~~~ 93 (155)
T cd01065 83 DLIINTTPVGM 93 (155)
T ss_pred CEEEeCcCCCC
Confidence 99999988443
|
Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann |
| >cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.069 Score=47.25 Aligned_cols=56 Identities=14% Similarity=0.248 Sum_probs=45.4
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCC
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGA 84 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 84 (485)
..+++|+|+|+.+.+|..++++|.++| .+|++.+|.. +++.+.+.++
T Consensus 42 l~gk~vlViG~G~~~G~~~a~~L~~~g-~~V~v~~r~~--------------------------------~~l~~~l~~a 88 (168)
T cd01080 42 LAGKKVVVVGRSNIVGKPLAALLLNRN-ATVTVCHSKT--------------------------------KNLKEHTKQA 88 (168)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHhhCC-CEEEEEECCc--------------------------------hhHHHHHhhC
Confidence 467999999987788999999999999 5888876531 3466788889
Q ss_pred CEEEEcCCC
Q 047227 85 EVVFHMAAP 93 (485)
Q Consensus 85 d~Vih~aa~ 93 (485)
|+||.+.+.
T Consensus 89 DiVIsat~~ 97 (168)
T cd01080 89 DIVIVAVGK 97 (168)
T ss_pred CEEEEcCCC
Confidence 999988874
|
NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a |
| >KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.093 Score=50.40 Aligned_cols=101 Identities=11% Similarity=0.052 Sum_probs=70.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCCC
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGAE 85 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~d 85 (485)
+++++-|+|..| +|+--+++..+.| .+|++++++.++ .+++.+.-+.+.+..-..|++.+.++.+-.|
T Consensus 181 pG~~vgI~GlGG-LGh~aVq~AKAMG-~rV~vis~~~~k----------keea~~~LGAd~fv~~~~d~d~~~~~~~~~d 248 (360)
T KOG0023|consen 181 PGKWVGIVGLGG-LGHMAVQYAKAMG-MRVTVISTSSKK----------KEEAIKSLGADVFVDSTEDPDIMKAIMKTTD 248 (360)
T ss_pred CCcEEEEecCcc-cchHHHHHHHHhC-cEEEEEeCCchh----------HHHHHHhcCcceeEEecCCHHHHHHHHHhhc
Confidence 678999999999 9999999999999 599999988531 2344445577777665568888888777666
Q ss_pred EEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCc
Q 047227 86 VVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSP 132 (485)
Q Consensus 86 ~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~ 132 (485)
.++|.+... +... ...+++.+|..| ++|+++-+
T Consensus 249 g~~~~v~~~-a~~~-----------~~~~~~~lk~~G--t~V~vg~p 281 (360)
T KOG0023|consen 249 GGIDTVSNL-AEHA-----------LEPLLGLLKVNG--TLVLVGLP 281 (360)
T ss_pred Ccceeeeec-cccc-----------hHHHHHHhhcCC--EEEEEeCc
Confidence 666665421 1111 113667777666 78888754
|
|
| >PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.11 Score=55.92 Aligned_cols=72 Identities=13% Similarity=0.090 Sum_probs=56.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHH-hcCCC
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQA-LQGAE 85 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~-~~~~d 85 (485)
.++|+|.| .|-+|+.+++.|.++| ..++++|.++.. .+.....+...+.||.+|++.++++ ++++|
T Consensus 400 ~~~vII~G-~Gr~G~~va~~L~~~g-~~vvvID~d~~~-----------v~~~~~~g~~v~~GDat~~~~L~~agi~~A~ 466 (601)
T PRK03659 400 KPQVIIVG-FGRFGQVIGRLLMANK-MRITVLERDISA-----------VNLMRKYGYKVYYGDATQLELLRAAGAEKAE 466 (601)
T ss_pred cCCEEEec-CchHHHHHHHHHHhCC-CCEEEEECCHHH-----------HHHHHhCCCeEEEeeCCCHHHHHhcCCccCC
Confidence 36788887 8999999999999999 488999877541 2223345788999999999988876 57799
Q ss_pred EEEEcC
Q 047227 86 VVFHMA 91 (485)
Q Consensus 86 ~Vih~a 91 (485)
+|+-+.
T Consensus 467 ~vv~~~ 472 (601)
T PRK03659 467 AIVITC 472 (601)
T ss_pred EEEEEe
Confidence 988654
|
|
| >cd00300 LDH_like L-lactate dehydrogenase-like enzymes | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.23 Score=48.56 Aligned_cols=111 Identities=14% Similarity=0.085 Sum_probs=71.5
Q ss_pred EEEEcCCCchHHHHHHHHHhcCC-ceEEEeecCCccccCCccchhhhhhhhcC-CCeEEEEecCCCHHHHHHHhcCCCEE
Q 047227 10 CVVTGGRGFAARHLVEMLIRYDM-FSVRIADLSDSIALEPHEEQGILGEALRS-GRAHYVSFDLRHKAQVLQALQGAEVV 87 (485)
Q Consensus 10 iLVtGgtG~iG~~l~~~Ll~~G~-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~Dl~d~~~l~~~~~~~d~V 87 (485)
|.|.| +|.+|+.++..|+..|. .++.++|...........+ +.+.... ...+...+ .| .+.++++|+|
T Consensus 1 i~iiG-aG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~D---L~~~~~~~~~~~i~~~--~~----~~~l~~aDiV 70 (300)
T cd00300 1 ITIIG-AGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALD---LSHASAFLATGTIVRG--GD----YADAADADIV 70 (300)
T ss_pred CEEEC-CCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHh---HHHhccccCCCeEEEC--CC----HHHhCCCCEE
Confidence 35777 58999999999998874 3799999865422111111 1111111 11222221 22 3477899999
Q ss_pred EEcCCC-CCCCCchhhhHHHHHHHHHHHHHHHHhcCCC-EEEEec
Q 047227 88 FHMAAP-NSSINNHKLHHSVNVEGTKNVIDACAELKVK-RLIYTS 130 (485)
Q Consensus 88 ih~aa~-~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~-r~V~~S 130 (485)
|-+++. .....+.......|+.-.+.+.+..++.+.+ .++.+|
T Consensus 71 Iitag~p~~~~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~s 115 (300)
T cd00300 71 VITAGAPRKPGETRLDLINRNAPILRSVITNLKKYGPDAIILVVS 115 (300)
T ss_pred EEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc
Confidence 999994 3344566778899999999999999998754 344444
|
Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot |
| >COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.51 Score=43.67 Aligned_cols=111 Identities=19% Similarity=0.260 Sum_probs=70.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccc-hhhh-----------hhhhc--CCCeEEEEe-cC
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEE-QGIL-----------GEALR--SGRAHYVSF-DL 71 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~-~~~~-----------~~~~~--~~~v~~~~~-Dl 71 (485)
..+|+|.| -|-+|+|.++.|.+.|--+++++|-..-.-.+...+ +.+. +.... .|..+.... |.
T Consensus 30 ~~~V~VvG-iGGVGSw~veALaRsGig~itlID~D~v~vTN~NRQi~A~~~~iGk~Kv~vm~eri~~InP~c~V~~~~~f 108 (263)
T COG1179 30 QAHVCVVG-IGGVGSWAVEALARSGIGRITLIDMDDVCVTNTNRQIHALLGDIGKPKVEVMKERIKQINPECEVTAINDF 108 (263)
T ss_pred hCcEEEEe-cCchhHHHHHHHHHcCCCeEEEEecccccccccchhhHhhhhhcccHHHHHHHHHHHhhCCCceEeehHhh
Confidence 45799998 788999999999999866888888654322111111 1111 11111 344444433 45
Q ss_pred CCHHHHHHHhc-CCCEEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCcccc
Q 047227 72 RHKAQVLQALQ-GAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVV 135 (485)
Q Consensus 72 ~d~~~l~~~~~-~~d~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy 135 (485)
-+++.+.+++. ++|+||++.- |+..=..|+..|++.+. -++||.++-
T Consensus 109 ~t~en~~~~~~~~~DyvIDaiD--------------~v~~Kv~Li~~c~~~ki---~vIss~Gag 156 (263)
T COG1179 109 ITEENLEDLLSKGFDYVIDAID--------------SVRAKVALIAYCRRNKI---PVISSMGAG 156 (263)
T ss_pred hCHhHHHHHhcCCCCEEEEchh--------------hhHHHHHHHHHHHHcCC---CEEeecccc
Confidence 56777888775 5999998763 34444579999999876 345665553
|
|
| >KOG0172 consensus Lysine-ketoglutarate reductase/saccharopine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.044 Score=53.80 Aligned_cols=75 Identities=16% Similarity=0.264 Sum_probs=60.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHH-HHHHHhcCCC
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKA-QVLQALQGAE 85 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~-~l~~~~~~~d 85 (485)
+++||+.| +||+.+.++.+|.+++..+|++.++..+. .+......+++.+..|+.|.+ .+++..+.-|
T Consensus 2 ~~~vlllg-sg~v~~p~~d~ls~~~dv~vtva~~~~~~----------~~~~~~~~~~~av~ldv~~~~~~L~~~v~~~D 70 (445)
T KOG0172|consen 2 KKGVLLLG-SGFVSRPVADFLSRKKDVNVTVASRTLKD----------AEALVKGINIKAVSLDVADEELALRKEVKPLD 70 (445)
T ss_pred CcceEEec-CccccchHHHHHhhcCCceEEEehhhHHH----------HHHHhcCCCccceEEEccchHHHHHhhhcccc
Confidence 47899998 99999999999999986788888775431 122223456889999999998 8888899999
Q ss_pred EEEEcCC
Q 047227 86 VVFHMAA 92 (485)
Q Consensus 86 ~Vih~aa 92 (485)
.|+-+..
T Consensus 71 ~viSLlP 77 (445)
T KOG0172|consen 71 LVISLLP 77 (445)
T ss_pred eeeeecc
Confidence 9998875
|
|
| >PRK07877 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.19 Score=54.68 Aligned_cols=107 Identities=15% Similarity=0.103 Sum_probs=68.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCC-ceEEEeecCCcc--ccCCc----cch---------hhhhhhhcCCCeEEEEec
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDM-FSVRIADLSDSI--ALEPH----EEQ---------GILGEALRSGRAHYVSFD 70 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~-~~V~~~~r~~~~--~~~~~----~~~---------~~~~~~~~~~~v~~~~~D 70 (485)
+.+|+|.|. | +|++++.+|...|- -+++++|...-. .++.. ..- ..+......-+++.+...
T Consensus 107 ~~~V~IvG~-G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~~~~~ 184 (722)
T PRK07877 107 RLRIGVVGL-S-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEVFTDG 184 (722)
T ss_pred cCCEEEEEe-c-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEEEecc
Confidence 568999998 8 99999999999983 478888875321 11111 000 000111112345556666
Q ss_pred CCCHHHHHHHhcCCCEEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecC
Q 047227 71 LRHKAQVLQALQGAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSS 131 (485)
Q Consensus 71 l~d~~~l~~~~~~~d~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS 131 (485)
++ ++.+.++++++|+|+.+.- + ...=..+-++|.+.++ -+|+.++
T Consensus 185 i~-~~n~~~~l~~~DlVvD~~D------~--------~~~R~~ln~~a~~~~i-P~i~~~~ 229 (722)
T PRK07877 185 LT-EDNVDAFLDGLDVVVEECD------S--------LDVKVLLREAARARRI-PVLMATS 229 (722)
T ss_pred CC-HHHHHHHhcCCCEEEECCC------C--------HHHHHHHHHHHHHcCC-CEEEEcC
Confidence 55 6678889999999998863 2 1222246688888886 4777664
|
|
| >PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.23 Score=43.75 Aligned_cols=35 Identities=17% Similarity=0.140 Sum_probs=29.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCc
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDS 43 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~ 43 (485)
||+|-+.| .|-.|+.+++.|+++| +.|.+.+|.+.
T Consensus 1 m~~Ig~IG-lG~mG~~~a~~L~~~g-~~v~~~d~~~~ 35 (163)
T PF03446_consen 1 MMKIGFIG-LGNMGSAMARNLAKAG-YEVTVYDRSPE 35 (163)
T ss_dssp -BEEEEE---SHHHHHHHHHHHHTT-TEEEEEESSHH
T ss_pred CCEEEEEc-hHHHHHHHHHHHHhcC-CeEEeeccchh
Confidence 47999998 7999999999999999 69999998854
|
1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A .... |
| >PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.049 Score=53.56 Aligned_cols=41 Identities=15% Similarity=0.106 Sum_probs=34.7
Q ss_pred CCCCCCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCc
Q 047227 1 MSGEENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDS 43 (485)
Q Consensus 1 M~~~~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~ 43 (485)
|....+.++|.|.| +|.+|+.++..++..| +.|++.|+.+.
T Consensus 1 ~~~~~~i~~VaVIG-aG~MG~giA~~~a~aG-~~V~l~D~~~~ 41 (321)
T PRK07066 1 MAVITDIKTFAAIG-SGVIGSGWVARALAHG-LDVVAWDPAPG 41 (321)
T ss_pred CCCCCCCCEEEEEC-cCHHHHHHHHHHHhCC-CeEEEEeCCHH
Confidence 55555567899998 7999999999999999 69999998754
|
|
| >PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.063 Score=51.78 Aligned_cols=55 Identities=15% Similarity=0.256 Sum_probs=45.0
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCC
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGA 84 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 84 (485)
..+++++|.|.+|.+|+.++..|+++| .+|++.++.. ..+.+.++++
T Consensus 157 l~Gk~vvViG~gg~vGkpia~~L~~~g-atVtv~~~~t--------------------------------~~L~~~~~~a 203 (283)
T PRK14192 157 LAGKHAVVVGRSAILGKPMAMMLLNAN-ATVTICHSRT--------------------------------QNLPELVKQA 203 (283)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhCC-CEEEEEeCCc--------------------------------hhHHHHhccC
Confidence 467899999999999999999999999 5888876521 2356666889
Q ss_pred CEEEEcCC
Q 047227 85 EVVFHMAA 92 (485)
Q Consensus 85 d~Vih~aa 92 (485)
|+||++.+
T Consensus 204 DIvI~AtG 211 (283)
T PRK14192 204 DIIVGAVG 211 (283)
T ss_pred CEEEEccC
Confidence 99999986
|
|
| >TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2 | Back alignment and domain information |
|---|
Probab=95.09 E-value=0.36 Score=44.11 Aligned_cols=82 Identities=15% Similarity=0.197 Sum_probs=53.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecC---CccccCCc----cchh-----hhhhhhc--CC--CeEEEEe
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLS---DSIALEPH----EEQG-----ILGEALR--SG--RAHYVSF 69 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~---~~~~~~~~----~~~~-----~~~~~~~--~~--~v~~~~~ 69 (485)
..++|+|.| .|-+|+.++..|...|.-+++++|.+ .+. +.++ ..-+ .....+. .+ +++.+..
T Consensus 20 ~~~~V~IvG-~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sN-L~Rq~~~~~~iG~~Ka~~~~~~l~~inp~~~i~~~~~ 97 (200)
T TIGR02354 20 EQATVAICG-LGGLGSNVAINLARAGIGKLILVDFDVVEPSN-LNRQQYKASQVGEPKTEALKENISEINPYTEIEAYDE 97 (200)
T ss_pred hCCcEEEEC-cCHHHHHHHHHHHHcCCCEEEEECCCEEcccc-cccccCChhhCCCHHHHHHHHHHHHHCCCCEEEEeee
Confidence 357899998 57899999999999996579999987 221 1111 0000 0111111 22 4455555
Q ss_pred cCCCHHHHHHHhcCCCEEEEc
Q 047227 70 DLRHKAQVLQALQGAEVVFHM 90 (485)
Q Consensus 70 Dl~d~~~l~~~~~~~d~Vih~ 90 (485)
+++ .+.+.++++++|+||.+
T Consensus 98 ~i~-~~~~~~~~~~~DlVi~a 117 (200)
T TIGR02354 98 KIT-EENIDKFFKDADIVCEA 117 (200)
T ss_pred eCC-HhHHHHHhcCCCEEEEC
Confidence 664 45678889999999977
|
Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter. |
| >PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.11 Score=53.37 Aligned_cols=35 Identities=14% Similarity=0.090 Sum_probs=31.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCc
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDS 43 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~ 43 (485)
+|+|.|.| .|++|..++..|.++| ++|+++|+++.
T Consensus 3 ~~kI~VIG-lG~~G~~~A~~La~~G-~~V~~~D~~~~ 37 (415)
T PRK11064 3 FETISVIG-LGYIGLPTAAAFASRQ-KQVIGVDINQH 37 (415)
T ss_pred ccEEEEEC-cchhhHHHHHHHHhCC-CEEEEEeCCHH
Confidence 47899997 8999999999999999 59999998765
|
|
| >cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1 | Back alignment and domain information |
|---|
Probab=95.02 E-value=0.22 Score=50.90 Aligned_cols=112 Identities=13% Similarity=0.018 Sum_probs=68.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccc----------------hhhhhhhhcCCCe--EEEE
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEE----------------QGILGEALRSGRA--HYVS 68 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~----------------~~~~~~~~~~~~v--~~~~ 68 (485)
..+|+|.|++| +|.++++.|+-.|--.++++|...-...+.... ...+... .+.+ +++.
T Consensus 20 ~s~VlliG~gg-lGsEilKNLvL~GIg~~tIvD~~~V~~sDL~~nFfl~~~diGk~kA~~~~~~L~eL--Np~V~i~~~~ 96 (425)
T cd01493 20 SAHVCLLNATA-TGTEILKNLVLPGIGSFTIVDGSKVDEEDLGNNFFLDASSLGKSRAEATCELLQEL--NPDVNGSAVE 96 (425)
T ss_pred hCeEEEEcCcH-HHHHHHHHHHHcCCCeEEEECCCcCchhhccccccCChhhcCcHHHHHHHHHHHHH--CCCCEEEEEe
Confidence 45899998655 999999999999966899998663211111110 0001111 2333 4554
Q ss_pred ecCCCH-HHHHHHhcCCCEEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCccccc
Q 047227 69 FDLRHK-AQVLQALQGAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVVF 136 (485)
Q Consensus 69 ~Dl~d~-~~l~~~~~~~d~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy~ 136 (485)
.++.+. +...+.+.++|+||.+.. . ......+.+.|++.++ .+|+++|.+.||
T Consensus 97 e~~~~ll~~~~~f~~~fdiVI~t~~------~--------~~~~~~L~~~c~~~~i-PlI~~~s~G~~G 150 (425)
T cd01493 97 ESPEALLDNDPSFFSQFTVVIATNL------P--------ESTLLRLADVLWSANI-PLLYVRSYGLYG 150 (425)
T ss_pred cccchhhhhHHHHhcCCCEEEECCC------C--------HHHHHHHHHHHHHcCC-CEEEEecccCEE
Confidence 444331 123456788999984321 1 1122347788999886 699999988886
|
APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain. |
| >TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.21 Score=52.54 Aligned_cols=104 Identities=14% Similarity=0.118 Sum_probs=70.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccc-cCCccchhhhhhhh-cCCCeEEEEecCCCHHHHHHHhcCC
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIA-LEPHEEQGILGEAL-RSGRAHYVSFDLRHKAQVLQALQGA 84 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~-~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~~~ 84 (485)
..+|+|.| .|-+|++++..|+..|-.++++++-+.... .++-.+ +...+. ..+++.+-..|..+.+++.++++++
T Consensus 129 ~akVlVlG-~Gg~~s~lv~sL~~sG~~~I~~vd~D~v~SNlnRIgE--l~e~A~~~n~~v~v~~i~~~~~~dl~ev~~~~ 205 (637)
T TIGR03693 129 NAKILAAG-SGDFLTKLVRSLIDSGFPRFHAIVTDAEEHALDRIHE--LAEIAEETDDALLVQEIDFAEDQHLHEAFEPA 205 (637)
T ss_pred cccEEEEe-cCchHHHHHHHHHhcCCCcEEEEeccccchhhhHHHH--HHHHHHHhCCCCceEeccCCcchhHHHhhcCC
Confidence 45899998 889999999999999977887775443311 111011 111111 1456666666767788899999999
Q ss_pred CEEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCE
Q 047227 85 EVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKR 125 (485)
Q Consensus 85 d~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r 125 (485)
|.|++++. +.+....+.+-++|.+.|..-
T Consensus 206 DiVi~vsD------------dy~~~~Lr~lN~acvkegk~~ 234 (637)
T TIGR03693 206 DWVLYVSD------------NGDIDDLHALHAFCKEEGKGF 234 (637)
T ss_pred cEEEEECC------------CCChHHHHHHHHHHHHcCCCe
Confidence 99999985 122234567888999888433
|
Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein. |
| >COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.95 E-value=0.065 Score=52.20 Aligned_cols=36 Identities=11% Similarity=0.179 Sum_probs=30.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCC
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSD 42 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~ 42 (485)
++||.|.|++||.|..|++.|..+.+.++.....+.
T Consensus 2 ~~kV~IvGasGYtG~EL~rlL~~Hp~ve~~~~ss~~ 37 (349)
T COG0002 2 MIKVGIVGASGYTGLELLRLLAGHPDVELILISSRE 37 (349)
T ss_pred CceEEEEcCCCCcHHHHHHHHhcCCCeEEEEeechh
Confidence 579999999999999999999998866766665443
|
|
| >PRK06728 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.94 E-value=0.3 Score=48.39 Aligned_cols=98 Identities=15% Similarity=0.248 Sum_probs=55.8
Q ss_pred CCCCCCCCEEEEEcCCCchHHHHHHHHHhcCCce---EEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHH
Q 047227 1 MSGEENERLCVVTGGRGFAARHLVEMLIRYDMFS---VRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQV 77 (485)
Q Consensus 1 M~~~~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~---V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l 77 (485)
|+.. .++|.|.|+||++|+.+++.|.++.... +..+....+..... .+....+.+ -++ |++
T Consensus 1 ~~~~--~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~~---------~~~~~~l~v--~~~-~~~-- 64 (347)
T PRK06728 1 MSEK--GYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTV---------QFKGREIII--QEA-KIN-- 64 (347)
T ss_pred CCCC--CCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcccCCCCe---------eeCCcceEE--EeC-CHH--
Confidence 5543 4799999999999999999998654455 55554432211110 011112222 222 333
Q ss_pred HHHhcCCCEEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCc
Q 047227 78 LQALQGAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSP 132 (485)
Q Consensus 78 ~~~~~~~d~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~ 132 (485)
.++++|+||-+++.. .++.+...+.+.|+ .+|=.||.
T Consensus 65 --~~~~~Divf~a~~~~---------------~s~~~~~~~~~~G~-~VID~Ss~ 101 (347)
T PRK06728 65 --SFEGVDIAFFSAGGE---------------VSRQFVNQAVSSGA-IVIDNTSE 101 (347)
T ss_pred --HhcCCCEEEECCChH---------------HHHHHHHHHHHCCC-EEEECchh
Confidence 236799999777511 22345666666674 56656653
|
|
| >PRK10669 putative cation:proton antiport protein; Provisional | Back alignment and domain information |
|---|
Probab=94.93 E-value=0.16 Score=54.35 Aligned_cols=71 Identities=17% Similarity=0.131 Sum_probs=55.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHH-hcCCCE
Q 047227 8 RLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQA-LQGAEV 86 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~-~~~~d~ 86 (485)
.+++|.| .|-+|+++++.|.++| ++|.++|.++.. .+.....+.+.+.+|.+|++.++++ ++++|+
T Consensus 418 ~hiiI~G-~G~~G~~la~~L~~~g-~~vvvId~d~~~-----------~~~~~~~g~~~i~GD~~~~~~L~~a~i~~a~~ 484 (558)
T PRK10669 418 NHALLVG-YGRVGSLLGEKLLAAG-IPLVVIETSRTR-----------VDELRERGIRAVLGNAANEEIMQLAHLDCARW 484 (558)
T ss_pred CCEEEEC-CChHHHHHHHHHHHCC-CCEEEEECCHHH-----------HHHHHHCCCeEEEcCCCCHHHHHhcCccccCE
Confidence 5788887 8999999999999999 488899876541 2222345789999999999988876 467998
Q ss_pred EEEcC
Q 047227 87 VFHMA 91 (485)
Q Consensus 87 Vih~a 91 (485)
|+-+.
T Consensus 485 viv~~ 489 (558)
T PRK10669 485 LLLTI 489 (558)
T ss_pred EEEEc
Confidence 77443
|
|
| >COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.85 E-value=0.23 Score=46.66 Aligned_cols=94 Identities=18% Similarity=0.218 Sum_probs=56.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCce-EEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCCC
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFS-VRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGAE 85 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~d 85 (485)
+|||.|.|++|-.|+.+++.+.+.++.+ +-+++|..+......-. . -.+...+..-+.| ++......+|
T Consensus 2 ~iki~V~Ga~GRMG~~ii~~v~~~~~~~L~aa~~~~~~~~~g~d~g-----e---~~g~~~~gv~v~~--~~~~~~~~~D 71 (266)
T COG0289 2 MIKVAVAGASGRMGRTLIRAVLEAPDLELVAAFDRPGSLSLGSDAG-----E---LAGLGLLGVPVTD--DLLLVKADAD 71 (266)
T ss_pred CceEEEEcCCChHHHHHHHHHhcCCCceEEEEEecCCccccccchh-----h---hccccccCceeec--chhhcccCCC
Confidence 5899999999999999999999886444 55556654422111100 0 0011111111122 1444556799
Q ss_pred EEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCE
Q 047227 86 VVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKR 125 (485)
Q Consensus 86 ~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r 125 (485)
++|++..| .++...++.|.+.+++-
T Consensus 72 V~IDFT~P---------------~~~~~~l~~~~~~~~~l 96 (266)
T COG0289 72 VLIDFTTP---------------EATLENLEFALEHGKPL 96 (266)
T ss_pred EEEECCCc---------------hhhHHHHHHHHHcCCCe
Confidence 99988753 23446788888888643
|
|
| >KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only] | Back alignment and domain information |
|---|
Probab=94.81 E-value=0.13 Score=51.29 Aligned_cols=77 Identities=16% Similarity=0.133 Sum_probs=48.8
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc-
Q 047227 4 EENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ- 82 (485)
Q Consensus 4 ~~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~- 82 (485)
..+++.|||.||+|-+|++.++-+...| ..++++..+... .+..+.-++.. ..|..+++-.++..+
T Consensus 155 ~~~g~~vLv~ggsggVG~~aiQlAk~~~-~~~v~t~~s~e~-----------~~l~k~lGAd~-vvdy~~~~~~e~~kk~ 221 (347)
T KOG1198|consen 155 LSKGKSVLVLGGSGGVGTAAIQLAKHAG-AIKVVTACSKEK-----------LELVKKLGADE-VVDYKDENVVELIKKY 221 (347)
T ss_pred cCCCCeEEEEeCCcHHHHHHHHHHHhcC-CcEEEEEcccch-----------HHHHHHcCCcE-eecCCCHHHHHHHHhh
Confidence 3467899999999999999999999988 333344333221 11111122222 346677554444433
Q ss_pred ---CCCEEEEcCCC
Q 047227 83 ---GAEVVFHMAAP 93 (485)
Q Consensus 83 ---~~d~Vih~aa~ 93 (485)
++|+|+++++.
T Consensus 222 ~~~~~DvVlD~vg~ 235 (347)
T KOG1198|consen 222 TGKGVDVVLDCVGG 235 (347)
T ss_pred cCCCccEEEECCCC
Confidence 49999999983
|
|
| >PRK08040 putative semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.77 E-value=0.13 Score=50.75 Aligned_cols=36 Identities=14% Similarity=0.129 Sum_probs=28.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCC--ceEEEeecC
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDM--FSVRIADLS 41 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~--~~V~~~~r~ 41 (485)
+.++|.|.|+||++|..+++.|.++.| .++..+...
T Consensus 3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~ 40 (336)
T PRK08040 3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALASE 40 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEcc
Confidence 347999999999999999999998543 356555443
|
|
| >cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1 | Back alignment and domain information |
|---|
Probab=94.77 E-value=0.4 Score=46.23 Aligned_cols=109 Identities=16% Similarity=0.109 Sum_probs=67.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccch----------------hhhhhhhcCCCeEEEEec
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQ----------------GILGEALRSGRAHYVSFD 70 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~----------------~~~~~~~~~~~v~~~~~D 70 (485)
..+|||.| .|-+|.++++.|...|--.++++|...-...+...+. ..+......-+++.+..+
T Consensus 19 ~s~VLIvG-~gGLG~EiaKnLalaGVg~itI~D~d~ve~snL~rqf~~~~~dIGk~Kaea~~~~L~eLNp~V~V~~~~~~ 97 (286)
T cd01491 19 KSNVLISG-LGGLGVEIAKNLILAGVKSVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEASQARLAELNPYVPVTVSTGP 97 (286)
T ss_pred cCcEEEEc-CCHHHHHHHHHHHHcCCCeEEEEcCCccchhhcccCccCChHHhCHHHHHHHHHHHHHHCCCCEEEEEecc
Confidence 46899998 7789999999999999778999987643222211110 001111112233344333
Q ss_pred CCCHHHHHHHhcCCCEEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCccccc
Q 047227 71 LRHKAQVLQALQGAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVVF 136 (485)
Q Consensus 71 l~d~~~l~~~~~~~d~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy~ 136 (485)
+ + .+.+.++|+||.+.. |...-..+-++|++.++ .||...+.+.+|
T Consensus 98 ~-~----~~~l~~fdvVV~~~~--------------~~~~~~~in~~c~~~~i-pfI~a~~~G~~G 143 (286)
T cd01491 98 L-T----TDELLKFQVVVLTDA--------------SLEDQLKINEFCHSPGI-KFISADTRGLFG 143 (286)
T ss_pred C-C----HHHHhcCCEEEEecC--------------CHHHHHHHHHHHHHcCC-EEEEEeccccEE
Confidence 2 2 245678999987642 22223356788999886 789888877765
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1. |
| >PRK07411 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=94.72 E-value=0.39 Score=48.76 Aligned_cols=113 Identities=18% Similarity=0.114 Sum_probs=69.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccch-------h-----hhhhhhc--CC--CeEEEEec
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQ-------G-----ILGEALR--SG--RAHYVSFD 70 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~-------~-----~~~~~~~--~~--~v~~~~~D 70 (485)
..+|+|.| .|-+|+++++.|...|--+++++|...-...+...+. + .....+. .+ +++.+...
T Consensus 38 ~~~VlivG-~GGlG~~va~~La~~Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~np~v~v~~~~~~ 116 (390)
T PRK07411 38 AASVLCIG-TGGLGSPLLLYLAAAGIGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEINPYCQVDLYETR 116 (390)
T ss_pred cCcEEEEC-CCHHHHHHHHHHHHcCCCEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHCCCCeEEEEecc
Confidence 46899998 7889999999999999768999987643221111110 0 0011111 23 44555555
Q ss_pred CCCHHHHHHHhcCCCEEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCccccc
Q 047227 71 LRHKAQVLQALQGAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVVF 136 (485)
Q Consensus 71 l~d~~~l~~~~~~~d~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy~ 136 (485)
++. +...+.+.++|+||.+.. ++. .-..+-++|.+.++ .+|+.+...-+|
T Consensus 117 ~~~-~~~~~~~~~~D~Vvd~~d------~~~--------~r~~ln~~~~~~~~-p~v~~~~~g~~g 166 (390)
T PRK07411 117 LSS-ENALDILAPYDVVVDGTD------NFP--------TRYLVNDACVLLNK-PNVYGSIFRFEG 166 (390)
T ss_pred cCH-HhHHHHHhCCCEEEECCC------CHH--------HHHHHHHHHHHcCC-CEEEEEEccCEE
Confidence 554 456678899999998764 221 12235578888875 577776655443
|
|
| >KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.71 E-value=0.35 Score=46.13 Aligned_cols=100 Identities=19% Similarity=0.280 Sum_probs=59.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCc-------------cchhhhhhhhcCCCeEEEEecCCC-
Q 047227 8 RLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPH-------------EEQGILGEALRSGRAHYVSFDLRH- 73 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~-------------~~~~~~~~~~~~~~v~~~~~Dl~d- 73 (485)
.=|+|.| .|-+|+|++..|++.|..+++++|...-+-.... +-.++.++. ..-+.+...|-++
T Consensus 75 syVVVVG-~GgVGSwv~nmL~RSG~qKi~iVDfdqVSlsSLNrHs~Atl~DVG~PK~~clkkh~--skiaPw~eIdar~~ 151 (430)
T KOG2018|consen 75 SYVVVVG-AGGVGSWVANMLLRSGVQKIRIVDFDQVSLSSLNRHSCATLADVGTPKVMCLKKHF--SKIAPWCEIDARNM 151 (430)
T ss_pred cEEEEEe-cCchhHHHHHHHHHhcCceEEEechhhccHhhhhhhhhhhHhhcCCchHHHHHHHH--HhhCccceecHHHh
Confidence 3466666 7889999999999999778999886543211110 001111111 1122344444332
Q ss_pred ---HHHHHHHhc-CCCEEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCC
Q 047227 74 ---KAQVLQALQ-GAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVK 124 (485)
Q Consensus 74 ---~~~l~~~~~-~~d~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~ 124 (485)
.+.-++++. ++|.|++|.- |++.-..++++|-.+|.+
T Consensus 152 l~~~~s~edll~gnPdFvvDciD--------------NidtKVdLL~y~~~~~l~ 192 (430)
T KOG2018|consen 152 LWTSSSEEDLLSGNPDFVVDCID--------------NIDTKVDLLEYCYNHGLK 192 (430)
T ss_pred hcCCCchhhhhcCCCCeEeEhhh--------------hhhhhhHHHHHHHHcCCc
Confidence 223344444 4899998863 555566899999999975
|
|
| >PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.69 E-value=0.081 Score=53.42 Aligned_cols=35 Identities=31% Similarity=0.526 Sum_probs=31.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecC
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLS 41 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~ 41 (485)
..++|.|.||.|.+|+.++..|.++| +.|++.++.
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~G-~~V~~~d~~ 131 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLSG-YQVRILEQD 131 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHCC-CeEEEeCCC
Confidence 45799999999999999999999999 589988763
|
|
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=94.64 E-value=0.14 Score=49.89 Aligned_cols=69 Identities=12% Similarity=0.158 Sum_probs=49.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCCC
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGAE 85 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~d 85 (485)
.+++++|+| .|-+|..++..|...| .+|++.+|..... .. ....+.+.+ +.+++.+.++++|
T Consensus 151 ~g~kvlViG-~G~iG~~~a~~L~~~G-a~V~v~~r~~~~~----------~~-~~~~G~~~~-----~~~~l~~~l~~aD 212 (296)
T PRK08306 151 HGSNVLVLG-FGRTGMTLARTLKALG-ANVTVGARKSAHL----------AR-ITEMGLSPF-----HLSELAEEVGKID 212 (296)
T ss_pred CCCEEEEEC-CcHHHHHHHHHHHHCC-CEEEEEECCHHHH----------HH-HHHcCCeee-----cHHHHHHHhCCCC
Confidence 478999999 5889999999999999 5999998874311 00 111233332 2345778888999
Q ss_pred EEEEcCC
Q 047227 86 VVFHMAA 92 (485)
Q Consensus 86 ~Vih~aa 92 (485)
+||++++
T Consensus 213 iVI~t~p 219 (296)
T PRK08306 213 IIFNTIP 219 (296)
T ss_pred EEEECCC
Confidence 9999764
|
|
| >TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit | Back alignment and domain information |
|---|
Probab=94.60 E-value=0.14 Score=49.74 Aligned_cols=70 Identities=9% Similarity=0.012 Sum_probs=49.1
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCC
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGA 84 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 84 (485)
..+++++|+| .|.+|+.+++.|...| .+|++.+|..... ... ...+...+ +.+.+.+.++++
T Consensus 149 l~gk~v~IiG-~G~iG~avA~~L~~~G-~~V~v~~R~~~~~----------~~~-~~~g~~~~-----~~~~l~~~l~~a 210 (287)
T TIGR02853 149 IHGSNVMVLG-FGRTGMTIARTFSALG-ARVFVGARSSADL----------ARI-TEMGLIPF-----PLNKLEEKVAEI 210 (287)
T ss_pred CCCCEEEEEc-ChHHHHHHHHHHHHCC-CEEEEEeCCHHHH----------HHH-HHCCCeee-----cHHHHHHHhccC
Confidence 3568999999 5889999999999999 5999998875311 111 11122221 234577788899
Q ss_pred CEEEEcCC
Q 047227 85 EVVFHMAA 92 (485)
Q Consensus 85 d~Vih~aa 92 (485)
|+||++..
T Consensus 211 DiVint~P 218 (287)
T TIGR02853 211 DIVINTIP 218 (287)
T ss_pred CEEEECCC
Confidence 99999764
|
This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA. |
| >PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional | Back alignment and domain information |
|---|
Probab=94.54 E-value=0.23 Score=53.66 Aligned_cols=72 Identities=17% Similarity=0.124 Sum_probs=56.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHH-hcCCC
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQA-LQGAE 85 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~-~~~~d 85 (485)
.++|+|.| -|-+|+.+++.|.++| ..++++|.++.. .+.+...+...+.||.+|++.++++ ++++|
T Consensus 400 ~~~vII~G-~Gr~G~~va~~L~~~g-~~vvvID~d~~~-----------v~~~~~~g~~v~~GDat~~~~L~~agi~~A~ 466 (621)
T PRK03562 400 QPRVIIAG-FGRFGQIVGRLLLSSG-VKMTVLDHDPDH-----------IETLRKFGMKVFYGDATRMDLLESAGAAKAE 466 (621)
T ss_pred cCcEEEEe-cChHHHHHHHHHHhCC-CCEEEEECCHHH-----------HHHHHhcCCeEEEEeCCCHHHHHhcCCCcCC
Confidence 36888887 8899999999999999 589999887541 2223345788999999999988765 46799
Q ss_pred EEEEcC
Q 047227 86 VVFHMA 91 (485)
Q Consensus 86 ~Vih~a 91 (485)
.|+-+.
T Consensus 467 ~vvv~~ 472 (621)
T PRK03562 467 VLINAI 472 (621)
T ss_pred EEEEEe
Confidence 888554
|
|
| >TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain | Back alignment and domain information |
|---|
Probab=94.51 E-value=0.51 Score=48.91 Aligned_cols=91 Identities=14% Similarity=0.204 Sum_probs=59.9
Q ss_pred CCCCCCEEEEEcCC---CchHHHHHHHHHhcCCc-eEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHH
Q 047227 3 GEENERLCVVTGGR---GFAARHLVEMLIRYDMF-SVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVL 78 (485)
Q Consensus 3 ~~~~~~~iLVtGgt---G~iG~~l~~~Ll~~G~~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~ 78 (485)
.-...++|.|.|++ |-+|..+.+.|++.|+. .|+.++.... . + ..+.-...+.
T Consensus 3 ~l~~p~siavvGaS~~~~~~g~~~~~~l~~~gf~g~v~~Vnp~~~-------------------~---i-~G~~~~~sl~ 59 (447)
T TIGR02717 3 HLFNPKSVAVIGASRDPGKVGYAIMKNLIEGGYKGKIYPVNPKAG-------------------E---I-LGVKAYPSVL 59 (447)
T ss_pred cccCCCEEEEEccCCCCCchHHHHHHHHHhCCCCCcEEEECCCCC-------------------c---c-CCccccCCHH
Confidence 33456899999998 77899999999998831 6776654321 0 0 1112222344
Q ss_pred HHhcCCCEEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecC
Q 047227 79 QALQGAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSS 131 (485)
Q Consensus 79 ~~~~~~d~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS 131 (485)
++-+.+|.++-+.. ......+++.|.+.|++.+|.+|+
T Consensus 60 ~lp~~~Dlavi~vp---------------~~~~~~~l~e~~~~gv~~~vi~s~ 97 (447)
T TIGR02717 60 EIPDPVDLAVIVVP---------------AKYVPQVVEECGEKGVKGAVVITA 97 (447)
T ss_pred HCCCCCCEEEEecC---------------HHHHHHHHHHHHhcCCCEEEEECC
Confidence 44456888775443 233456888888899999988886
|
Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff. |
| >TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form | Back alignment and domain information |
|---|
Probab=94.48 E-value=0.21 Score=48.48 Aligned_cols=31 Identities=16% Similarity=0.130 Sum_probs=25.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCceEEEe
Q 047227 8 RLCVVTGGRGFAARHLVEMLIRYDMFSVRIA 38 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~ 38 (485)
-+|.|.|+|||.|..+++.|.++.+.++..+
T Consensus 2 ~~v~IvGasGy~G~el~rlL~~HP~~el~~l 32 (310)
T TIGR01851 2 PKVFIDGEAGTTGLQIRERLSGRDDIELLSI 32 (310)
T ss_pred CeEEEECCCChhHHHHHHHHhCCCCeEEEEE
Confidence 3799999999999999999999875455444
|
This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment. |
| >cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins | Back alignment and domain information |
|---|
Probab=94.44 E-value=0.4 Score=46.82 Aligned_cols=111 Identities=15% Similarity=0.170 Sum_probs=67.3
Q ss_pred EEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhc--CCCeEEEEecCCCHHHHHHHhcCCCEE
Q 047227 10 CVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALR--SGRAHYVSFDLRHKAQVLQALQGAEVV 87 (485)
Q Consensus 10 iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~Dl~d~~~l~~~~~~~d~V 87 (485)
|.|+|+ |.+|..++..|..+|..+|+++|....... ....... +... ..... +... .| . +.++++|.|
T Consensus 1 I~IIGa-G~vG~~ia~~la~~~l~eV~L~Di~e~~~~--g~~~dl~-~~~~~~~~~~~-I~~t-~d---~-~~l~dADiV 70 (300)
T cd01339 1 ISIIGA-GNVGATLAQLLALKELGDVVLLDIVEGLPQ--GKALDIS-QAAPILGSDTK-VTGT-ND---Y-EDIAGSDVV 70 (300)
T ss_pred CEEECC-CHHHHHHHHHHHhCCCcEEEEEeCCCcHHH--HHHHHHH-HhhhhcCCCeE-EEEc-CC---H-HHhCCCCEE
Confidence 468886 999999999998887338999998754211 0011011 1111 11122 2211 22 2 347899999
Q ss_pred EEcCCCCC-CCCchhhhHHHHHHHHHHHHHHHHhcCCCE-EEEec
Q 047227 88 FHMAAPNS-SINNHKLHHSVNVEGTKNVIDACAELKVKR-LIYTS 130 (485)
Q Consensus 88 ih~aa~~~-~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r-~V~~S 130 (485)
|-+++... ...+.......|..-.+.+++.+.+...+. +|.+|
T Consensus 71 Iit~g~p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~s 115 (300)
T cd01339 71 VITAGIPRKPGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVT 115 (300)
T ss_pred EEecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 99998433 333444566778888888988888877443 44444
|
Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas |
| >PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.41 E-value=0.14 Score=49.25 Aligned_cols=56 Identities=18% Similarity=0.256 Sum_probs=46.1
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCC
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGA 84 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 84 (485)
..+++|+|+|.++.+|+.++..|.++| ..|++..+.. ..+.+.++++
T Consensus 156 l~Gk~vvVIGrs~~VG~pla~lL~~~g-atVtv~~s~t--------------------------------~~l~~~~~~A 202 (286)
T PRK14175 156 LEGKNAVVIGRSHIVGQPVSKLLLQKN-ASVTILHSRS--------------------------------KDMASYLKDA 202 (286)
T ss_pred CCCCEEEEECCCchhHHHHHHHHHHCC-CeEEEEeCCc--------------------------------hhHHHHHhhC
Confidence 467999999999999999999999999 6888875421 1466778889
Q ss_pred CEEEEcCCC
Q 047227 85 EVVFHMAAP 93 (485)
Q Consensus 85 d~Vih~aa~ 93 (485)
|+||...+.
T Consensus 203 DIVIsAvg~ 211 (286)
T PRK14175 203 DVIVSAVGK 211 (286)
T ss_pred CEEEECCCC
Confidence 999988873
|
|
| >TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain | Back alignment and domain information |
|---|
Probab=94.33 E-value=0.69 Score=42.43 Aligned_cols=89 Identities=20% Similarity=0.240 Sum_probs=60.2
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCC
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGA 84 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 84 (485)
.++++|||.| .|-+|..-++.|++.| ..|++++.... .+ +.......+++++..+.... .++++
T Consensus 7 l~gk~vlVvG-gG~va~rk~~~Ll~~g-a~VtVvsp~~~------~~---l~~l~~~~~i~~~~~~~~~~-----dl~~~ 70 (205)
T TIGR01470 7 LEGRAVLVVG-GGDVALRKARLLLKAG-AQLRVIAEELE------SE---LTLLAEQGGITWLARCFDAD-----ILEGA 70 (205)
T ss_pred cCCCeEEEEC-cCHHHHHHHHHHHHCC-CEEEEEcCCCC------HH---HHHHHHcCCEEEEeCCCCHH-----HhCCc
Confidence 3578999998 7899999999999999 68998865432 11 22223345789988886632 35778
Q ss_pred CEEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCC
Q 047227 85 EVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKV 123 (485)
Q Consensus 85 d~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v 123 (485)
+.||-..+ ++ +.| ..+...|++.++
T Consensus 71 ~lVi~at~------d~----~ln----~~i~~~a~~~~i 95 (205)
T TIGR01470 71 FLVIAATD------DE----ELN----RRVAHAARARGV 95 (205)
T ss_pred EEEEECCC------CH----HHH----HHHHHHHHHcCC
Confidence 88873322 22 122 368888888764
|
This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms. |
| >PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=94.33 E-value=0.19 Score=52.14 Aligned_cols=75 Identities=9% Similarity=0.034 Sum_probs=49.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc-CC
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ-GA 84 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-~~ 84 (485)
++++++|||++| +|...++.|.+.| +.|.+.|+....... ....+...++++..++.. .. ++. ++
T Consensus 4 ~~k~v~v~G~g~-~G~s~a~~l~~~G-~~V~~~d~~~~~~~~-------~~~~l~~~g~~~~~~~~~--~~---~~~~~~ 69 (447)
T PRK02472 4 QNKKVLVLGLAK-SGYAAAKLLHKLG-ANVTVNDGKPFSENP-------EAQELLEEGIKVICGSHP--LE---LLDEDF 69 (447)
T ss_pred CCCEEEEEeeCH-HHHHHHHHHHHCC-CEEEEEcCCCccchh-------HHHHHHhcCCEEEeCCCC--HH---HhcCcC
Confidence 468999999988 9999999999999 699998865421110 111123345666554322 11 233 48
Q ss_pred CEEEEcCCCC
Q 047227 85 EVVFHMAAPN 94 (485)
Q Consensus 85 d~Vih~aa~~ 94 (485)
|.||...|..
T Consensus 70 d~vV~s~gi~ 79 (447)
T PRK02472 70 DLMVKNPGIP 79 (447)
T ss_pred CEEEECCCCC
Confidence 9999988843
|
|
| >TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit | Back alignment and domain information |
|---|
Probab=94.26 E-value=1.4 Score=42.63 Aligned_cols=89 Identities=12% Similarity=0.123 Sum_probs=56.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcC--C
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQG--A 84 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~--~ 84 (485)
+-+|+|-|-||.+|+.+.+.+...|...|..++.+.. ...+ ..+.-..++.++-+. +
T Consensus 6 ~~~~~~~g~~~~~~~~~~~~~~~~g~~~v~~V~p~~~-----------------~~~v----~G~~~y~sv~dlp~~~~~ 64 (286)
T TIGR01019 6 DTKVIVQGITGSQGSFHTEQMLAYGTNIVGGVTPGKG-----------------GTTV----LGLPVFDSVKEAVEETGA 64 (286)
T ss_pred CCcEEEecCCcHHHHHHHHHHHhCCCCEEEEECCCCC-----------------ccee----cCeeccCCHHHHhhccCC
Confidence 4589999999999999999999988543433322210 0011 122223345555454 7
Q ss_pred CEEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecC
Q 047227 85 EVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSS 131 (485)
Q Consensus 85 d~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS 131 (485)
|.++-+.+ ......+++.|.+.|++..|.+|+
T Consensus 65 Dlavi~vp---------------a~~v~~~l~e~~~~Gvk~avIis~ 96 (286)
T TIGR01019 65 NASVIFVP---------------APFAADAIFEAIDAGIELIVCITE 96 (286)
T ss_pred CEEEEecC---------------HHHHHHHHHHHHHCCCCEEEEECC
Confidence 98876553 122345777788889998888876
|
ATP citrate lyases appear to form an outgroup. |
| >PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional | Back alignment and domain information |
|---|
Probab=94.25 E-value=0.18 Score=52.05 Aligned_cols=72 Identities=17% Similarity=0.164 Sum_probs=51.6
Q ss_pred CCCCEEEEEcC----------------CCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEE
Q 047227 5 ENERLCVVTGG----------------RGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVS 68 (485)
Q Consensus 5 ~~~~~iLVtGg----------------tG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 68 (485)
..+++||||+| ||..|.++++.+..+| .+|+++.-... .. ...+++.+.
T Consensus 254 l~gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~G-A~VtlI~Gp~~--~~------------~p~~v~~i~ 318 (475)
T PRK13982 254 LAGRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAG-AEVTLISGPVD--LA------------DPQGVKVIH 318 (475)
T ss_pred cCCCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHCC-CcEEEEeCCcC--CC------------CCCCceEEE
Confidence 57899999987 7999999999999999 68888852211 00 124566665
Q ss_pred ecCCCHHHHHHHhc---CCCEEEEcCCC
Q 047227 69 FDLRHKAQVLQALQ---GAEVVFHMAAP 93 (485)
Q Consensus 69 ~Dl~d~~~l~~~~~---~~d~Vih~aa~ 93 (485)
. ...+++.++++ ..|++|+.||+
T Consensus 319 V--~ta~eM~~av~~~~~~Di~I~aAAV 344 (475)
T PRK13982 319 V--ESARQMLAAVEAALPADIAIFAAAV 344 (475)
T ss_pred e--cCHHHHHHHHHhhCCCCEEEEeccc
Confidence 4 45555555553 37999999994
|
|
| >cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase | Back alignment and domain information |
|---|
Probab=94.24 E-value=0.3 Score=48.47 Aligned_cols=37 Identities=14% Similarity=0.035 Sum_probs=31.3
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCC
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSD 42 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~ 42 (485)
..+.+|||+|++|-+|..+++.+...| .+|.+++++.
T Consensus 150 ~~g~~VlI~Ga~G~vG~~aiqlAk~~G-~~Vi~~~~~~ 186 (338)
T cd08295 150 KKGETVFVSAASGAVGQLVGQLAKLKG-CYVVGSAGSD 186 (338)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHcC-CEEEEEeCCH
Confidence 346799999999999999999999999 5787776654
|
This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in |
| >PRK06718 precorrin-2 dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=94.16 E-value=0.25 Score=45.17 Aligned_cols=71 Identities=15% Similarity=0.247 Sum_probs=46.5
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCC
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGA 84 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 84 (485)
.++++|||.|| |-+|...++.|++.| .+|+++++.... + +........+.+..-++.. ..+.++
T Consensus 8 l~~k~vLVIGg-G~va~~ka~~Ll~~g-a~V~VIs~~~~~------~---l~~l~~~~~i~~~~~~~~~-----~~l~~a 71 (202)
T PRK06718 8 LSNKRVVIVGG-GKVAGRRAITLLKYG-AHIVVISPELTE------N---LVKLVEEGKIRWKQKEFEP-----SDIVDA 71 (202)
T ss_pred cCCCEEEEECC-CHHHHHHHHHHHHCC-CeEEEEcCCCCH------H---HHHHHhCCCEEEEecCCCh-----hhcCCc
Confidence 45789999995 999999999999999 589888653211 1 2222223456665433332 235678
Q ss_pred CEEEEcC
Q 047227 85 EVVFHMA 91 (485)
Q Consensus 85 d~Vih~a 91 (485)
|.||-+.
T Consensus 72 dlViaaT 78 (202)
T PRK06718 72 FLVIAAT 78 (202)
T ss_pred eEEEEcC
Confidence 9888543
|
|
| >PRK14852 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.15 E-value=0.51 Score=52.66 Aligned_cols=113 Identities=11% Similarity=0.119 Sum_probs=69.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchh------------hhhhhhc--CC--CeEEEEe
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQG------------ILGEALR--SG--RAHYVSF 69 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~------------~~~~~~~--~~--~v~~~~~ 69 (485)
.+.+|+|.| .|-+|++++..|...|--+++++|...-...+...+.. .....+. ++ +++.+..
T Consensus 331 ~~srVlVvG-lGGlGs~ia~~LAraGVG~I~L~D~D~Ve~SNLNRQ~l~~~~dIG~~Kaevaa~~l~~INP~v~I~~~~~ 409 (989)
T PRK14852 331 LRSRVAIAG-LGGVGGIHLMTLARTGIGNFNLADFDAYSPVNLNRQYGASIASFGRGKLDVMTERALSVNPFLDIRSFPE 409 (989)
T ss_pred hcCcEEEEC-CcHHHHHHHHHHHHcCCCeEEEEcCCEecccccccccCCChhhCCChHHHHHHHHHHHHCCCCeEEEEec
Confidence 356899998 78899999999999986688888865322111111100 0011111 33 3444544
Q ss_pred cCCCHHHHHHHhcCCCEEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCcc
Q 047227 70 DLRHKAQVLQALQGAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPS 133 (485)
Q Consensus 70 Dl~d~~~l~~~~~~~d~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~ 133 (485)
.+ +.+.+.+.++++|+||.+.- +. ....-+.+.+.|++.++ .+|+.++.+
T Consensus 410 ~I-~~en~~~fl~~~DiVVDa~D------~~------~~~~rr~l~~~c~~~~I-P~I~ag~~G 459 (989)
T PRK14852 410 GV-AAETIDAFLKDVDLLVDGID------FF------ALDIRRRLFNRALELGI-PVITAGPLG 459 (989)
T ss_pred CC-CHHHHHHHhhCCCEEEECCC------Cc------cHHHHHHHHHHHHHcCC-CEEEeeccc
Confidence 54 45678888999999997653 11 11122467778888886 477766633
|
|
| >PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=94.11 E-value=0.16 Score=45.75 Aligned_cols=34 Identities=21% Similarity=0.237 Sum_probs=26.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCc
Q 047227 8 RLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDS 43 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~ 43 (485)
|+|.|.| .||+|-.++..|.+.| ++|+++|..+.
T Consensus 1 M~I~ViG-lGyvGl~~A~~lA~~G-~~V~g~D~~~~ 34 (185)
T PF03721_consen 1 MKIAVIG-LGYVGLPLAAALAEKG-HQVIGVDIDEE 34 (185)
T ss_dssp -EEEEE---STTHHHHHHHHHHTT-SEEEEE-S-HH
T ss_pred CEEEEEC-CCcchHHHHHHHHhCC-CEEEEEeCChH
Confidence 6899996 9999999999999999 59999998765
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D .... |
| >KOG1496 consensus Malate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=94.10 E-value=0.11 Score=47.61 Aligned_cols=180 Identities=17% Similarity=0.188 Sum_probs=88.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCC----c---eEEEeecCCccccCCccchhhhhhhhcCCCeEEE-EecCCCHHHHH
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDM----F---SVRIADLSDSIALEPHEEQGILGEALRSGRAHYV-SFDLRHKAQVL 78 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~----~---~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~Dl~d~~~l~ 78 (485)
.-||||||++|.||.+++..+.+ |. . ...+++..+... ..+. ..-.++..-+... ..+.++ .-.
T Consensus 4 pirVlVtGAAGqI~ysll~~ia~-G~vfG~dQPiiL~lLdi~~~~~--~Leg---V~mELqD~a~PlL~~Vvatt--d~~ 75 (332)
T KOG1496|consen 4 PIRVLVTGAAGQIGYSLLPMIAR-GIVFGKDQPIILHLLDIPPMMS--VLEG---VKMELQDCALPLLKGVVATT--DEV 75 (332)
T ss_pred ceEEEeecccchhhHHHHHHHcC-ceeecCCCceEEEeeCCchHHH--HHHH---HHHHHHhhhhhHHHhhhccc--Chh
Confidence 36999999999999999887654 41 1 122222221100 0000 0000000000000 111111 235
Q ss_pred HHhcCCCEEEEcCC-CCCCCCchhhhHHHHHHHHHHHHHHHHhc---CCCEEEEecCccccccCCCCcCCCCCCCCCCCC
Q 047227 79 QALQGAEVVFHMAA-PNSSINNHKLHHSVNVEGTKNVIDACAEL---KVKRLIYTSSPSVVFDGVHGIINGNEALPYPPK 154 (485)
Q Consensus 79 ~~~~~~d~Vih~aa-~~~~~~~~~~~~~~nv~~t~~ll~a~~~~---~v~r~V~~SS~~vy~~~~~~~~~~~e~~~~~~~ 154 (485)
++|++.|+.|-..+ +.....+.......|+.-.+.--.+..+. .+| ++.+.-++- ....--.+..| ...
T Consensus 76 ~afkdv~~ailvGa~PR~eGMERkDll~~NvkIfk~Qg~AL~k~A~~~~K-VlVVgNPaN-----TNali~~k~Ap-sIP 148 (332)
T KOG1496|consen 76 EAFKDVDVAILVGAMPRREGMERKDLLSANVKIFKSQGAALEKYAKPNVK-VLVVGNPAN-----TNALILKKFAP-SIP 148 (332)
T ss_pred hhhccCcEEEEeccccCcccchhhhHHhhcceeehhhhHHHHHhcCCCce-EEEecCccc-----cchhHHhhhCC-CCc
Confidence 67888999999988 44444466677888887766665555554 354 443332211 00000011111 011
Q ss_pred CCchHHHHHHHHHHHHHHHhCCCCceEEEEecCCcccCCCCCChHHH
Q 047227 155 HNDFYSATKAEGEALVIKANGTNGLLTCCIRPSSIFGPGDRLLVPSL 201 (485)
Q Consensus 155 ~~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~~~~~~~ 201 (485)
..+.-..++..-.+...+.+.+.|.++.-+..-.|+|.+....+|+.
T Consensus 149 ~kNfs~lTRLDhNRA~~QlA~klgv~~~~VkNviIWGNHSsTQyPD~ 195 (332)
T KOG1496|consen 149 EKNFSALTRLDHNRALAQLALKLGVPVSDVKNVIIWGNHSSTQYPDV 195 (332)
T ss_pred hhcchhhhhhchhhHHHHHHHhhCCchhhcceeEEecccccccCCCc
Confidence 12223344444445555555566777777777777887654444443
|
|
| >TIGR00518 alaDH alanine dehydrogenase | Back alignment and domain information |
|---|
Probab=94.09 E-value=0.18 Score=50.75 Aligned_cols=74 Identities=12% Similarity=0.148 Sum_probs=52.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCCC
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGAE 85 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~d 85 (485)
...+|+|+| +|-+|...++.|...| .+|.++++...... . +...+ + ..+..+..+.+.+.+.+.++|
T Consensus 166 ~~~~VlViG-aG~vG~~aa~~a~~lG-a~V~v~d~~~~~~~----~---l~~~~---g-~~v~~~~~~~~~l~~~l~~aD 232 (370)
T TIGR00518 166 EPGDVTIIG-GGVVGTNAAKMANGLG-ATVTILDINIDRLR----Q---LDAEF---G-GRIHTRYSNAYEIEDAVKRAD 232 (370)
T ss_pred CCceEEEEc-CCHHHHHHHHHHHHCC-CeEEEEECCHHHHH----H---HHHhc---C-ceeEeccCCHHHHHHHHccCC
Confidence 456799997 5999999999999999 58999988643110 0 11111 1 123345567788899999999
Q ss_pred EEEEcCC
Q 047227 86 VVFHMAA 92 (485)
Q Consensus 86 ~Vih~aa 92 (485)
+||.++.
T Consensus 233 vVI~a~~ 239 (370)
T TIGR00518 233 LLIGAVL 239 (370)
T ss_pred EEEEccc
Confidence 9999875
|
The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. |
| >PRK14851 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.08 E-value=0.55 Score=51.02 Aligned_cols=110 Identities=14% Similarity=0.100 Sum_probs=68.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchh----------------hhhhhhcCCCeEEEEe
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQG----------------ILGEALRSGRAHYVSF 69 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~----------------~~~~~~~~~~v~~~~~ 69 (485)
.+.+|+|.| .|-+|++++..|...|--+++++|...-...+...+.. .+......-+++.+..
T Consensus 42 ~~~~VlIvG-~GGlGs~va~~Lar~GVG~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~~~~l~~inP~~~I~~~~~ 120 (679)
T PRK14851 42 AEAKVAIPG-MGGVGGVHLITMVRTGIGRFHIADFDQFEPVNVNRQFGARVPSFGRPKLAVMKEQALSINPFLEITPFPA 120 (679)
T ss_pred hcCeEEEEC-cCHHHHHHHHHHHHhCCCeEEEEcCCEecccccccCcCcChhhCCCHHHHHHHHHHHHhCCCCeEEEEec
Confidence 357899998 88899999999999996688888865321111111100 0011111234556666
Q ss_pred cCCCHHHHHHHhcCCCEEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEec
Q 047227 70 DLRHKAQVLQALQGAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTS 130 (485)
Q Consensus 70 Dl~d~~~l~~~~~~~d~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~S 130 (485)
.++ .+.+.+.++++|+||.+.- ++ ....-..+.+.|++.++. +|+.+
T Consensus 121 ~i~-~~n~~~~l~~~DvVid~~D------~~------~~~~r~~l~~~c~~~~iP-~i~~g 167 (679)
T PRK14851 121 GIN-ADNMDAFLDGVDVVLDGLD------FF------QFEIRRTLFNMAREKGIP-VITAG 167 (679)
T ss_pred CCC-hHHHHHHHhCCCEEEECCC------CC------cHHHHHHHHHHHHHCCCC-EEEee
Confidence 665 4567888999999997652 11 011123577789988863 66554
|
|
| >COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only] | Back alignment and domain information |
|---|
Probab=94.01 E-value=0.51 Score=46.72 Aligned_cols=74 Identities=20% Similarity=0.190 Sum_probs=46.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCC---HHHHHHHhc
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRH---KAQVLQALQ 82 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d---~~~l~~~~~ 82 (485)
.+.+|||+||+|-+|+..++.+...|. .+.++..++.. .. .+...+...+. |.++ .+.+.++..
T Consensus 142 ~g~~VLV~gaaGgVG~~aiQlAk~~G~-~~v~~~~s~~k----------~~-~~~~lGAd~vi-~y~~~~~~~~v~~~t~ 208 (326)
T COG0604 142 PGETVLVHGAAGGVGSAAIQLAKALGA-TVVAVVSSSEK----------LE-LLKELGADHVI-NYREEDFVEQVRELTG 208 (326)
T ss_pred CCCEEEEecCCchHHHHHHHHHHHcCC-cEEEEecCHHH----------HH-HHHhcCCCEEE-cCCcccHHHHHHHHcC
Confidence 367999999999999999999999994 54444433221 11 22222333222 2223 234445553
Q ss_pred --CCCEEEEcCC
Q 047227 83 --GAEVVFHMAA 92 (485)
Q Consensus 83 --~~d~Vih~aa 92 (485)
++|+|++..+
T Consensus 209 g~gvDvv~D~vG 220 (326)
T COG0604 209 GKGVDVVLDTVG 220 (326)
T ss_pred CCCceEEEECCC
Confidence 5999998876
|
|
| >PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF) | Back alignment and domain information |
|---|
Probab=93.98 E-value=0.24 Score=43.33 Aligned_cols=56 Identities=16% Similarity=0.262 Sum_probs=41.3
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcC
Q 047227 4 EENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQG 83 (485)
Q Consensus 4 ~~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~ 83 (485)
+..+|+++|.|.++.+|+.++..|.++| ..|++..... +.+.+..+.
T Consensus 33 ~l~Gk~v~VvGrs~~VG~Pla~lL~~~~-atVt~~h~~T--------------------------------~~l~~~~~~ 79 (160)
T PF02882_consen 33 DLEGKKVVVVGRSNIVGKPLAMLLLNKG-ATVTICHSKT--------------------------------KNLQEITRR 79 (160)
T ss_dssp STTT-EEEEE-TTTTTHHHHHHHHHHTT--EEEEE-TTS--------------------------------SSHHHHHTT
T ss_pred CCCCCEEEEECCcCCCChHHHHHHHhCC-CeEEeccCCC--------------------------------Ccccceeee
Confidence 3568999999999999999999999999 6888764432 135666788
Q ss_pred CCEEEEcCC
Q 047227 84 AEVVFHMAA 92 (485)
Q Consensus 84 ~d~Vih~aa 92 (485)
+|+||-.+|
T Consensus 80 ADIVVsa~G 88 (160)
T PF02882_consen 80 ADIVVSAVG 88 (160)
T ss_dssp SSEEEE-SS
T ss_pred ccEEeeeec
Confidence 999998887
|
Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A .... |
| >TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase | Back alignment and domain information |
|---|
Probab=93.95 E-value=0.34 Score=47.75 Aligned_cols=36 Identities=17% Similarity=0.033 Sum_probs=30.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCC
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSD 42 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~ 42 (485)
.+.+|||+|++|-+|..+++.+...| .+|.+++++.
T Consensus 138 ~g~~VLI~ga~g~vG~~aiqlAk~~G-~~Vi~~~~s~ 173 (325)
T TIGR02825 138 GGETVMVNAAAGAVGSVVGQIAKLKG-CKVVGAAGSD 173 (325)
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHcC-CEEEEEeCCH
Confidence 46799999999999999999999999 5787776654
|
Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase. |
| >PRK05678 succinyl-CoA synthetase subunit alpha; Validated | Back alignment and domain information |
|---|
Probab=93.93 E-value=2.2 Score=41.28 Aligned_cols=90 Identities=12% Similarity=0.097 Sum_probs=57.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcC--
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQG-- 83 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~-- 83 (485)
++-||+|.|-||-+|+.+.+.|++.|...|..++..... ..+ ..+.-..++.++-+.
T Consensus 7 ~~~~~~v~~~~~~~g~~~l~~l~~~g~~~v~pVnp~~~~-----------------~~v----~G~~~y~sv~dlp~~~~ 65 (291)
T PRK05678 7 KDTKVIVQGITGKQGTFHTEQMLAYGTNIVGGVTPGKGG-----------------TTV----LGLPVFNTVAEAVEATG 65 (291)
T ss_pred CCCeEEEeCCCchHHHHHHHHHHHCCCCEEEEECCCCCC-----------------CeE----eCeeccCCHHHHhhccC
Confidence 346899999999999999999999874344444432100 011 122223345555554
Q ss_pred CCEEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecC
Q 047227 84 AEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSS 131 (485)
Q Consensus 84 ~d~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS 131 (485)
+|.++-+.. ......+++.|.+.|++..|.+|+
T Consensus 66 ~DlAvi~vp---------------~~~v~~~l~e~~~~gvk~avI~s~ 98 (291)
T PRK05678 66 ANASVIYVP---------------PPFAADAILEAIDAGIDLIVCITE 98 (291)
T ss_pred CCEEEEEcC---------------HHHHHHHHHHHHHCCCCEEEEECC
Confidence 898775543 233456788888899998888886
|
|
| >PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated | Back alignment and domain information |
|---|
Probab=93.93 E-value=0.2 Score=51.04 Aligned_cols=70 Identities=9% Similarity=0.085 Sum_probs=51.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc--C
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ--G 83 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--~ 83 (485)
..|+|+|+| +|..|+.++..+.+.| +.|.+++..+... ... . .-.++..|..|.+.+.++++ +
T Consensus 11 ~~~~ilIiG-~g~~~~~~~~a~~~~G-~~v~~~~~~~~~~---~~~-------~---ad~~~~~~~~d~~~l~~~~~~~~ 75 (395)
T PRK09288 11 SATRVMLLG-SGELGKEVAIEAQRLG-VEVIAVDRYANAP---AMQ-------V---AHRSHVIDMLDGDALRAVIEREK 75 (395)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHHCC-CEEEEEeCCCCCc---hHH-------h---hhheEECCCCCHHHHHHHHHHhC
Confidence 357999998 5799999999999999 5888887764310 000 0 11356778889999988887 7
Q ss_pred CCEEEEc
Q 047227 84 AEVVFHM 90 (485)
Q Consensus 84 ~d~Vih~ 90 (485)
+|.|+-.
T Consensus 76 id~vi~~ 82 (395)
T PRK09288 76 PDYIVPE 82 (395)
T ss_pred CCEEEEe
Confidence 9999853
|
|
| >cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=93.90 E-value=0.51 Score=46.36 Aligned_cols=36 Identities=19% Similarity=0.164 Sum_probs=30.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCC
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSD 42 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~ 42 (485)
.+.++||+|++|.+|..+++.+...| ..|.++.+.+
T Consensus 162 ~~~~vlI~ga~g~vG~~~~~~a~~~g-~~v~~~~~~~ 197 (332)
T cd08259 162 KGDTVLVTGAGGGVGIHAIQLAKALG-ARVIAVTRSP 197 (332)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcC-CeEEEEeCCH
Confidence 35789999999999999999999999 5787776653
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. |
| >TIGR01915 npdG NADPH-dependent F420 reductase | Back alignment and domain information |
|---|
Probab=93.90 E-value=0.084 Score=49.05 Aligned_cols=35 Identities=20% Similarity=0.141 Sum_probs=31.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCc
Q 047227 8 RLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDS 43 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~ 43 (485)
|+|.|+||+|.+|+.++..|.+.| ++|.+.+|.+.
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G-~~V~v~~r~~~ 35 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAG-NKIIIGSRDLE 35 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCC-CEEEEEEcCHH
Confidence 589999999999999999999999 58888887654
|
This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase. |
| >cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=93.90 E-value=0.076 Score=52.19 Aligned_cols=72 Identities=21% Similarity=0.230 Sum_probs=49.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCCC
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGAE 85 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~d 85 (485)
.+++|+|.|+ |-+|..+++.|...|...|++++|....... +...+ +... .+.+++.+.+.++|
T Consensus 177 ~~~~V~ViGa-G~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~-------la~~~---g~~~-----~~~~~~~~~l~~aD 240 (311)
T cd05213 177 KGKKVLVIGA-GEMGELAAKHLAAKGVAEITIANRTYERAEE-------LAKEL---GGNA-----VPLDELLELLNEAD 240 (311)
T ss_pred cCCEEEEECc-HHHHHHHHHHHHHcCCCEEEEEeCCHHHHHH-------HHHHc---CCeE-----EeHHHHHHHHhcCC
Confidence 5789999985 9999999999998775689999887532111 11111 1222 23345677788899
Q ss_pred EEEEcCCC
Q 047227 86 VVFHMAAP 93 (485)
Q Consensus 86 ~Vih~aa~ 93 (485)
+||.+.+.
T Consensus 241 vVi~at~~ 248 (311)
T cd05213 241 VVISATGA 248 (311)
T ss_pred EEEECCCC
Confidence 99988873
|
Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, |
| >PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ] | Back alignment and domain information |
|---|
Probab=93.89 E-value=0.25 Score=37.58 Aligned_cols=35 Identities=31% Similarity=0.406 Sum_probs=30.1
Q ss_pred EEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccc
Q 047227 9 LCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIA 45 (485)
Q Consensus 9 ~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~ 45 (485)
+|+|.| +|++|-.++..|.+.| .+|+++.+.+...
T Consensus 1 ~vvViG-gG~ig~E~A~~l~~~g-~~vtli~~~~~~~ 35 (80)
T PF00070_consen 1 RVVVIG-GGFIGIELAEALAELG-KEVTLIERSDRLL 35 (80)
T ss_dssp EEEEES-SSHHHHHHHHHHHHTT-SEEEEEESSSSSS
T ss_pred CEEEEC-cCHHHHHHHHHHHHhC-cEEEEEeccchhh
Confidence 577887 8999999999999999 5999999887633
|
Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A .... |
| >COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.80 E-value=0.23 Score=48.83 Aligned_cols=68 Identities=10% Similarity=0.074 Sum_probs=52.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCCCE
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGAEV 86 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~d~ 86 (485)
+++|-|+| .|++|+=++....+.| ++|++++..+...... ---..+.++..|++++.++.+++|+
T Consensus 1 ~~tvgIlG-GGQLgrMm~~aa~~lG-~~v~vLdp~~~~PA~~-------------va~~~i~~~~dD~~al~ela~~~DV 65 (375)
T COG0026 1 MKTVGILG-GGQLGRMMALAAARLG-IKVIVLDPDADAPAAQ-------------VADRVIVAAYDDPEALRELAAKCDV 65 (375)
T ss_pred CCeEEEEc-CcHHHHHHHHHHHhcC-CEEEEecCCCCCchhh-------------cccceeecCCCCHHHHHHHHhhCCE
Confidence 36899998 7999999999999999 6999998654421110 1124567788899999999999998
Q ss_pred EEE
Q 047227 87 VFH 89 (485)
Q Consensus 87 Vih 89 (485)
|-.
T Consensus 66 iT~ 68 (375)
T COG0026 66 ITY 68 (375)
T ss_pred EEE
Confidence 863
|
|
| >TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase | Back alignment and domain information |
|---|
Probab=93.76 E-value=0.27 Score=50.43 Aligned_cols=34 Identities=21% Similarity=0.289 Sum_probs=30.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCc
Q 047227 8 RLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDS 43 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~ 43 (485)
|+|.|.| .|++|..++..|.+.| ++|+++++.+.
T Consensus 1 mkI~vIG-lG~~G~~lA~~La~~G-~~V~~~d~~~~ 34 (411)
T TIGR03026 1 MKIAVIG-LGYVGLPLAALLADLG-HEVTGVDIDQE 34 (411)
T ss_pred CEEEEEC-CCchhHHHHHHHHhcC-CeEEEEECCHH
Confidence 5788997 8999999999999999 58999998765
|
All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively. |
| >PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=93.76 E-value=0.98 Score=35.89 Aligned_cols=86 Identities=19% Similarity=0.254 Sum_probs=59.5
Q ss_pred EEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCCCEEE
Q 047227 9 LCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGAEVVF 88 (485)
Q Consensus 9 ~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~d~Vi 88 (485)
+|||.||..-.-..+-+.+-+.| .+.....|.. ++-.....+...++++|.||
T Consensus 1 ~vliVGG~~~~~~~~~~~~~~~G-~~~~~hg~~~--------------------------~~~~~~~~l~~~i~~aD~VI 53 (97)
T PF10087_consen 1 SVLIVGGREDRERRYKRILEKYG-GKLIHHGRDG--------------------------GDEKKASRLPSKIKKADLVI 53 (97)
T ss_pred CEEEEcCCcccHHHHHHHHHHcC-CEEEEEecCC--------------------------CCccchhHHHHhcCCCCEEE
Confidence 48999996666677778888888 4555442221 12223345888889999999
Q ss_pred EcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCccc
Q 047227 89 HMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSV 134 (485)
Q Consensus 89 h~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~v 134 (485)
-+.. -++...+..+-+.|++.++ .++|+.+.++
T Consensus 54 v~t~------------~vsH~~~~~vk~~akk~~i-p~~~~~~~~~ 86 (97)
T PF10087_consen 54 VFTD------------YVSHNAMWKVKKAAKKYGI-PIIYSRSRGV 86 (97)
T ss_pred EEeC------------CcChHHHHHHHHHHHHcCC-cEEEECCCCH
Confidence 8775 3444566788999999986 6888876554
|
|
| >PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=93.72 E-value=0.2 Score=48.41 Aligned_cols=55 Identities=15% Similarity=0.249 Sum_probs=44.5
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCC
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGA 84 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 84 (485)
..+++|.|.|.+|.+|+.++..|+++| +.|++.++... .+.++.+.+
T Consensus 157 l~Gk~V~vIG~s~ivG~PmA~~L~~~g-atVtv~~~~t~--------------------------------~l~e~~~~A 203 (301)
T PRK14194 157 LTGKHAVVIGRSNIVGKPMAALLLQAH-CSVTVVHSRST--------------------------------DAKALCRQA 203 (301)
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHCC-CEEEEECCCCC--------------------------------CHHHHHhcC
Confidence 468999999999999999999999999 69998865421 245666778
Q ss_pred CEEEEcCC
Q 047227 85 EVVFHMAA 92 (485)
Q Consensus 85 d~Vih~aa 92 (485)
|+||-+.+
T Consensus 204 DIVIsavg 211 (301)
T PRK14194 204 DIVVAAVG 211 (301)
T ss_pred CEEEEecC
Confidence 88887776
|
|
| >COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=93.69 E-value=1.1 Score=44.74 Aligned_cols=79 Identities=27% Similarity=0.346 Sum_probs=51.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCcccc------CCccchhhhhhhhc----CCCeEEEEecCCCHHHH
Q 047227 8 RLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIAL------EPHEEQGILGEALR----SGRAHYVSFDLRHKAQV 77 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~------~~~~~~~~~~~~~~----~~~v~~~~~Dl~d~~~l 77 (485)
|||-|.| +||+|-....-|.+.|| +|+++|..+++.. .+-.+++ +...++ ..+..+ .. +.
T Consensus 1 MkI~viG-tGYVGLv~g~~lA~~GH-eVv~vDid~~KV~~ln~g~~PI~Epg-Le~ll~~~~~~gRl~f-Tt------d~ 70 (414)
T COG1004 1 MKITVIG-TGYVGLVTGACLAELGH-EVVCVDIDESKVELLNKGISPIYEPG-LEELLKENLASGRLRF-TT------DY 70 (414)
T ss_pred CceEEEC-CchHHHHHHHHHHHcCC-eEEEEeCCHHHHHHHhCCCCCCcCcc-HHHHHHhccccCcEEE-Ec------CH
Confidence 6899997 99999999999999995 9999998765321 1111111 222222 111222 12 35
Q ss_pred HHHhcCCCEEEEcCCCCCC
Q 047227 78 LQALQGAEVVFHMAAPNSS 96 (485)
Q Consensus 78 ~~~~~~~d~Vih~aa~~~~ 96 (485)
.++++..|++|-+.+++..
T Consensus 71 ~~a~~~adv~fIavgTP~~ 89 (414)
T COG1004 71 EEAVKDADVVFIAVGTPPD 89 (414)
T ss_pred HHHHhcCCEEEEEcCCCCC
Confidence 6778889999988885444
|
|
| >PF08732 HIM1: HIM1; InterPro: IPR014843 HIM1 (high induction of mutagenesis protein 1) plays a role in the control of spontaneous and induced mutagenesis [] | Back alignment and domain information |
|---|
Probab=93.66 E-value=0.18 Score=49.88 Aligned_cols=95 Identities=15% Similarity=0.101 Sum_probs=64.2
Q ss_pred CEEEEcCCCCC-CCC-chhhhHHHHHHHHHHHHHHHH----hcCCCEEEEecCccccccCCCCcCCCCCCCCCCCCCCch
Q 047227 85 EVVFHMAAPNS-SIN-NHKLHHSVNVEGTKNVIDACA----ELKVKRLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDF 158 (485)
Q Consensus 85 d~Vih~aa~~~-~~~-~~~~~~~~nv~~t~~ll~a~~----~~~v~r~V~~SS~~vy~~~~~~~~~~~e~~~~~~~~~~~ 158 (485)
+.+|.+-|+.. ... .......+..+-+..++++.. +.+.|++|.++|...- ......+
T Consensus 205 ~t~is~LGsts~~a~~s~~~~~~IDy~Lnl~laq~f~~~~~~~~~K~~vIvTSfn~~----------------~~s~~f~ 268 (410)
T PF08732_consen 205 KTMISTLGSTSAQAKSSKAARHKIDYQLNLDLAQTFANDIKNTGNKKLVIVTSFNNN----------------AISSMFP 268 (410)
T ss_pred hhheecCCCChhhccccccchhhccccccHHHHHHhhhhhccCCCceEEEEEecCcc----------------hhhhhhh
Confidence 45666666322 111 122333556666667777776 6778999999985432 1356678
Q ss_pred HHHHHHHHHHHHHHHhCCCCceEEEEecCCcccCCCC
Q 047227 159 YSATKAEGEALVIKANGTNGLLTCCIRPSSIFGPGDR 195 (485)
Q Consensus 159 Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~ 195 (485)
|-..|...|+.+.......--..+|||||.+.|.+.+
T Consensus 269 Yfk~K~~LE~dl~~~l~~~l~~lvILRPGplvG~h~~ 305 (410)
T PF08732_consen 269 YFKTKGELENDLQNLLPPKLKHLVILRPGPLVGEHGS 305 (410)
T ss_pred hhHHHHHHHHHHHhhcccccceEEEecCccccCCCCC
Confidence 9999999999998865422245899999999997654
|
It is thought to participate in the control of processing of mutational intermediates appearing during error-prone bypass of DNA damage. |
| >cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively | Back alignment and domain information |
|---|
Probab=93.63 E-value=0.63 Score=44.94 Aligned_cols=33 Identities=15% Similarity=0.367 Sum_probs=28.7
Q ss_pred EEEEEcCCCchHHHHHHHHHhcCCceEEEeecCC
Q 047227 9 LCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSD 42 (485)
Q Consensus 9 ~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~ 42 (485)
+|||.| .|-+|+++++.|...|--+++++|.+.
T Consensus 1 kVLIvG-aGGLGs~vA~~La~aGVg~ItlvD~D~ 33 (307)
T cd01486 1 KCLLLG-AGTLGCNVARNLLGWGVRHITFVDSGK 33 (307)
T ss_pred CEEEEC-CCHHHHHHHHHHHHcCCCeEEEECCCE
Confidence 588887 788999999999999977899998753
|
This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole. |
| >PRK08655 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.57 E-value=0.081 Score=54.56 Aligned_cols=35 Identities=17% Similarity=0.252 Sum_probs=31.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCc
Q 047227 8 RLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDS 43 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~ 43 (485)
|+|.|+||+|.+|+.++..|.+.| ++|++.+|.+.
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G-~~V~v~~r~~~ 35 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKG-FEVIVTGRDPK 35 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCC-CEEEEEECChH
Confidence 589999999999999999999999 58999988643
|
|
| >PLN02353 probable UDP-glucose 6-dehydrogenase | Back alignment and domain information |
|---|
Probab=93.55 E-value=0.27 Score=51.09 Aligned_cols=36 Identities=14% Similarity=0.145 Sum_probs=30.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCC-ceEEEeecCCc
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDM-FSVRIADLSDS 43 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~-~~V~~~~r~~~ 43 (485)
+|+|.|.| .|++|..++..|.++|+ ++|+++|..+.
T Consensus 1 ~m~I~ViG-~GyvGl~~A~~lA~~g~g~~V~gvD~~~~ 37 (473)
T PLN02353 1 MVKICCIG-AGYVGGPTMAVIALKCPDIEVVVVDISVP 37 (473)
T ss_pred CCEEEEEC-CCHHHHHHHHHHHhcCCCCeEEEEECCHH
Confidence 47899996 99999999999999853 58999998765
|
|
| >PRK13940 glutamyl-tRNA reductase; Provisional | Back alignment and domain information |
|---|
Probab=93.51 E-value=0.12 Score=52.86 Aligned_cols=75 Identities=12% Similarity=0.139 Sum_probs=52.1
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCC
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGA 84 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 84 (485)
..+++|||.| +|-.|+.++.+|...|..++++.+|....... +...+ +.. .....+++.+.+..+
T Consensus 179 l~~kkvlviG-aG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~-------La~~~--~~~-----~~~~~~~l~~~l~~a 243 (414)
T PRK13940 179 ISSKNVLIIG-AGQTGELLFRHVTALAPKQIMLANRTIEKAQK-------ITSAF--RNA-----SAHYLSELPQLIKKA 243 (414)
T ss_pred ccCCEEEEEc-CcHHHHHHHHHHHHcCCCEEEEECCCHHHHHH-------HHHHh--cCC-----eEecHHHHHHHhccC
Confidence 3568999998 59999999999999996689999887542211 11111 111 122345677888899
Q ss_pred CEEEEcCCCC
Q 047227 85 EVVFHMAAPN 94 (485)
Q Consensus 85 d~Vih~aa~~ 94 (485)
|+||++.+.+
T Consensus 244 DiVI~aT~a~ 253 (414)
T PRK13940 244 DIIIAAVNVL 253 (414)
T ss_pred CEEEECcCCC
Confidence 9999998743
|
|
| >PRK06849 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.47 E-value=0.31 Score=49.50 Aligned_cols=35 Identities=26% Similarity=0.339 Sum_probs=31.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCC
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSD 42 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~ 42 (485)
+|+|||||+...+|-.+++.|.+.| ++|++++..+
T Consensus 4 ~~~VLI~G~~~~~~l~iar~l~~~G-~~Vi~~d~~~ 38 (389)
T PRK06849 4 KKTVLITGARAPAALELARLFHNAG-HTVILADSLK 38 (389)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCCc
Confidence 5899999999999999999999999 5888887764
|
|
| >TIGR01771 L-LDH-NAD L-lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=93.41 E-value=0.98 Score=44.06 Aligned_cols=108 Identities=12% Similarity=0.085 Sum_probs=69.9
Q ss_pred EcCCCchHHHHHHHHHhcCCc-eEEEeecCCccccCCccchhhhhhhh--cCCCeEEEEecCCCHHHHHHHhcCCCEEEE
Q 047227 13 TGGRGFAARHLVEMLIRYDMF-SVRIADLSDSIALEPHEEQGILGEAL--RSGRAHYVSFDLRHKAQVLQALQGAEVVFH 89 (485)
Q Consensus 13 tGgtG~iG~~l~~~Ll~~G~~-~V~~~~r~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~Dl~d~~~l~~~~~~~d~Vih 89 (485)
.| +|.+|+.++..|..++.. ++.++|...........+ +.+.. ....+... + .| .+.++++|+||-
T Consensus 2 IG-aG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~D---l~~~~~~~~~~~~i~-~--~~----~~~~~daDivVi 70 (299)
T TIGR01771 2 IG-AGNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMD---LQHAASFLPTPKKIR-S--GD----YSDCKDADLVVI 70 (299)
T ss_pred CC-cCHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHH---HHHhhcccCCCeEEe-c--CC----HHHHCCCCEEEE
Confidence 45 699999999999888754 699998854321110001 11111 01223332 2 23 356789999999
Q ss_pred cCCC-CCCCCchhhhHHHHHHHHHHHHHHHHhcCCC-EEEEecC
Q 047227 90 MAAP-NSSINNHKLHHSVNVEGTKNVIDACAELKVK-RLIYTSS 131 (485)
Q Consensus 90 ~aa~-~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~-r~V~~SS 131 (485)
.|+. .....+....+..|+.-.+.+.+.+++++.+ .++.+|-
T Consensus 71 tag~~rk~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsN 114 (299)
T TIGR01771 71 TAGAPQKPGETRLELVGRNVRIMKSIVPEVVKSGFDGIFLVATN 114 (299)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 9994 3334466788999999999999999998753 4555553
|
This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases. |
| >PRK10537 voltage-gated potassium channel; Provisional | Back alignment and domain information |
|---|
Probab=93.39 E-value=1.1 Score=45.49 Aligned_cols=70 Identities=13% Similarity=0.033 Sum_probs=51.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHH-hcCCC
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQA-LQGAE 85 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~-~~~~d 85 (485)
+.+++|.| .|-+|+.+++.|.++|+ .|.+++.... . .....+..++.||.+|++.+.++ +++++
T Consensus 240 k~HvII~G-~g~lg~~v~~~L~~~g~-~vvVId~d~~------------~-~~~~~g~~vI~GD~td~e~L~~AgI~~A~ 304 (393)
T PRK10537 240 KDHFIICG-HSPLAINTYLGLRQRGQ-AVTVIVPLGL------------E-HRLPDDADLIPGDSSDSAVLKKAGAARAR 304 (393)
T ss_pred CCeEEEEC-CChHHHHHHHHHHHCCC-CEEEEECchh------------h-hhccCCCcEEEeCCCCHHHHHhcCcccCC
Confidence 35788887 78999999999999984 7777764311 0 11234678999999999988876 56799
Q ss_pred EEEEcC
Q 047227 86 VVFHMA 91 (485)
Q Consensus 86 ~Vih~a 91 (485)
+|+-+.
T Consensus 305 aVI~~t 310 (393)
T PRK10537 305 AILALR 310 (393)
T ss_pred EEEEcC
Confidence 988544
|
|
| >PRK00258 aroE shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=93.19 E-value=0.12 Score=49.96 Aligned_cols=38 Identities=18% Similarity=0.256 Sum_probs=32.5
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCc
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDS 43 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~ 43 (485)
..+++++|+|+ |-+|+.++..|...|..+|++++|...
T Consensus 121 ~~~k~vlVlGa-Gg~a~ai~~aL~~~g~~~V~v~~R~~~ 158 (278)
T PRK00258 121 LKGKRILILGA-GGAARAVILPLLDLGVAEITIVNRTVE 158 (278)
T ss_pred CCCCEEEEEcC-cHHHHHHHHHHHHcCCCEEEEEeCCHH
Confidence 35679999985 999999999999999558999998754
|
|
| >COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=93.14 E-value=0.96 Score=42.21 Aligned_cols=96 Identities=15% Similarity=0.143 Sum_probs=63.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc--CC
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ--GA 84 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--~~ 84 (485)
+|+|+|.|||+ =++.+++.|...+. .+++.+-... ...+. .+......+-..+.+.+.+.++ ++
T Consensus 2 ~~~ilvlGGT~-Dar~la~~L~~~~~-~~~~ss~t~~-g~~l~-----------~~~~~~~~~G~l~~e~l~~~l~e~~i 67 (257)
T COG2099 2 MMRILLLGGTS-DARALAKKLAAAPV-DIILSSLTGY-GAKLA-----------EQIGPVRVGGFLGAEGLAAFLREEGI 67 (257)
T ss_pred CceEEEEeccH-HHHHHHHHhhccCc-cEEEEEcccc-cccch-----------hccCCeeecCcCCHHHHHHHHHHcCC
Confidence 47999999995 68999999999883 3333322111 11111 1112255566678889999886 59
Q ss_pred CEEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEE
Q 047227 85 EVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIY 128 (485)
Q Consensus 85 d~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~ 128 (485)
|.||+..-|. -.+-+.|.+++|++.|+.-+.|
T Consensus 68 ~llIDATHPy------------Aa~iS~Na~~aake~gipy~r~ 99 (257)
T COG2099 68 DLLIDATHPY------------AARISQNAARAAKETGIPYLRL 99 (257)
T ss_pred CEEEECCChH------------HHHHHHHHHHHHHHhCCcEEEE
Confidence 9999765321 2345779999999999865443
|
|
| >PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.11 E-value=0.23 Score=48.79 Aligned_cols=35 Identities=14% Similarity=0.156 Sum_probs=30.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCC
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSD 42 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~ 42 (485)
+.|+|.|.| +|-+|+.++..|.+.| ++|++.+|..
T Consensus 3 ~~m~I~iiG-~G~~G~~lA~~l~~~G-~~V~~~~r~~ 37 (308)
T PRK14619 3 QPKTIAILG-AGAWGSTLAGLASANG-HRVRVWSRRS 37 (308)
T ss_pred CCCEEEEEC-ccHHHHHHHHHHHHCC-CEEEEEeCCC
Confidence 458999997 8999999999999999 5999988753
|
|
| >COG2085 Predicted dinucleotide-binding enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.08 E-value=0.1 Score=47.39 Aligned_cols=68 Identities=21% Similarity=0.127 Sum_probs=41.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCCCEE
Q 047227 8 RLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGAEVV 87 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~d~V 87 (485)
|++.| ||+|.||+.+++.|.+.|| +|.+..|..+..... ....+ .+. + ...+..++.+..|+|
T Consensus 2 ~~~~i-~GtGniG~alA~~~a~ag~-eV~igs~r~~~~~~a------~a~~l-~~~---i-----~~~~~~dA~~~aDVV 64 (211)
T COG2085 2 MIIAI-IGTGNIGSALALRLAKAGH-EVIIGSSRGPKALAA------AAAAL-GPL---I-----TGGSNEDAAALADVV 64 (211)
T ss_pred cEEEE-eccChHHHHHHHHHHhCCC-eEEEecCCChhHHHH------HHHhh-ccc---c-----ccCChHHHHhcCCEE
Confidence 55655 5699999999999999995 888776554322111 11111 111 1 112355677889999
Q ss_pred EEcCC
Q 047227 88 FHMAA 92 (485)
Q Consensus 88 ih~aa 92 (485)
|-...
T Consensus 65 vLAVP 69 (211)
T COG2085 65 VLAVP 69 (211)
T ss_pred EEecc
Confidence 96654
|
|
| >PRK00045 hemA glutamyl-tRNA reductase; Reviewed | Back alignment and domain information |
|---|
Probab=93.07 E-value=0.15 Score=52.40 Aligned_cols=74 Identities=18% Similarity=0.197 Sum_probs=50.6
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCC
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGA 84 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 84 (485)
..+++|+|+| +|-+|..+++.|...|..+|++.+|....... +...+ +. +..+.+++.+.+.++
T Consensus 180 ~~~~~vlViG-aG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~-------la~~~---g~-----~~~~~~~~~~~l~~a 243 (423)
T PRK00045 180 LSGKKVLVIG-AGEMGELVAKHLAEKGVRKITVANRTLERAEE-------LAEEF---GG-----EAIPLDELPEALAEA 243 (423)
T ss_pred ccCCEEEEEC-chHHHHHHHHHHHHCCCCeEEEEeCCHHHHHH-------HHHHc---CC-----cEeeHHHHHHHhccC
Confidence 4568999998 59999999999999995589999887532110 11111 11 122335566778899
Q ss_pred CEEEEcCCCC
Q 047227 85 EVVFHMAAPN 94 (485)
Q Consensus 85 d~Vih~aa~~ 94 (485)
|+||.+.+..
T Consensus 244 DvVI~aT~s~ 253 (423)
T PRK00045 244 DIVISSTGAP 253 (423)
T ss_pred CEEEECCCCC
Confidence 9999988743
|
|
| >TIGR01408 Ube1 ubiquitin-activating enzyme E1 | Back alignment and domain information |
|---|
Probab=92.94 E-value=0.69 Score=52.54 Aligned_cols=110 Identities=15% Similarity=0.074 Sum_probs=67.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccc----------------hhhhhhhhcCCCeEEEEec
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEE----------------QGILGEALRSGRAHYVSFD 70 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~----------------~~~~~~~~~~~~v~~~~~D 70 (485)
..+|||.|. |-+|.++++.|...|--.++++|...-...+...+ ...+......-.++.+..+
T Consensus 24 ~s~VLIiG~-gGLG~EiaKnL~laGVg~iti~D~d~v~~sdL~rQf~~~~~dIGk~Kaea~~~~L~eLNp~V~V~~~~~~ 102 (1008)
T TIGR01408 24 KSNVLISGM-GGLGLEIAKNLVLAGVKSVTLHDTEKCQAWDLSSNFFLSEDDVGRNRAEAVVKKLAELNPYVHVSSSSVP 102 (1008)
T ss_pred hCcEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCeecHhhCCCceecchHHcCchHHHHHHHHHHHHCCCceEEEeccc
Confidence 358999985 56999999999999977899998764321111110 0001111111233444444
Q ss_pred CCCHHHHHHHhcCCCEEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCC-CEEEEecCccccc
Q 047227 71 LRHKAQVLQALQGAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKV-KRLIYTSSPSVVF 136 (485)
Q Consensus 71 l~d~~~l~~~~~~~d~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v-~r~V~~SS~~vy~ 136 (485)
+. .+.++++|+||.+.. +......+-++|++.+. ..||+.++.+.||
T Consensus 103 l~-----~e~l~~fdvVV~t~~--------------~~~~~~~in~~cr~~~~~I~fI~~~~~G~~G 150 (1008)
T TIGR01408 103 FN-----EEFLDKFQCVVLTEM--------------SLPLQKEINDFCHSQCPPIAFISADVRGLFG 150 (1008)
T ss_pred CC-----HHHHcCCCEEEECCC--------------CHHHHHHHHHHHHHcCCCeEEEEEeecceEE
Confidence 42 346789999997532 22223457799999982 2689888877765
|
This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions. |
| >PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B | Back alignment and domain information |
|---|
Probab=92.84 E-value=0.81 Score=36.81 Aligned_cols=88 Identities=16% Similarity=0.264 Sum_probs=56.2
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCC
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGA 84 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 84 (485)
.++++|||+|| |-+|..=++.|++.| .+|+++..... ...+.+++..-+. .+.++++
T Consensus 5 l~~~~vlVvGg-G~va~~k~~~Ll~~g-A~v~vis~~~~---------------~~~~~i~~~~~~~------~~~l~~~ 61 (103)
T PF13241_consen 5 LKGKRVLVVGG-GPVAARKARLLLEAG-AKVTVISPEIE---------------FSEGLIQLIRREF------EEDLDGA 61 (103)
T ss_dssp -TT-EEEEEEE-SHHHHHHHHHHCCCT-BEEEEEESSEH---------------HHHTSCEEEESS-------GGGCTTE
T ss_pred cCCCEEEEECC-CHHHHHHHHHHHhCC-CEEEEECCchh---------------hhhhHHHHHhhhH------HHHHhhh
Confidence 35789999995 999999999999999 79999876520 0013455544332 2347788
Q ss_pred CEEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecC
Q 047227 85 EVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSS 131 (485)
Q Consensus 85 d~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS 131 (485)
+.||-+.+ ++. ....+.+.|++.++ +|.++.
T Consensus 62 ~lV~~at~------d~~--------~n~~i~~~a~~~~i--~vn~~D 92 (103)
T PF13241_consen 62 DLVFAATD------DPE--------LNEAIYADARARGI--LVNVVD 92 (103)
T ss_dssp SEEEE-SS-------HH--------HHHHHHHHHHHTTS--EEEETT
T ss_pred eEEEecCC------CHH--------HHHHHHHHHhhCCE--EEEECC
Confidence 98883322 221 22467888888774 666554
|
|
| >smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain | Back alignment and domain information |
|---|
Probab=92.75 E-value=0.64 Score=38.58 Aligned_cols=30 Identities=20% Similarity=0.396 Sum_probs=24.8
Q ss_pred EEEEEcCCCchHHHHHHHHHhcCCceEEEe
Q 047227 9 LCVVTGGRGFAARHLVEMLIRYDMFSVRIA 38 (485)
Q Consensus 9 ~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~ 38 (485)
|+.|+|++|.+|..+++.|.+....++..+
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av 30 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVAL 30 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEEEE
Confidence 478999999999999999999633566666
|
The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase. |
| >PRK13302 putative L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.64 E-value=0.23 Score=47.73 Aligned_cols=40 Identities=20% Similarity=0.215 Sum_probs=29.3
Q ss_pred CCCCCCCCEEEEEcCCCchHHHHHHHHHhc-CCceEE-EeecCC
Q 047227 1 MSGEENERLCVVTGGRGFAARHLVEMLIRY-DMFSVR-IADLSD 42 (485)
Q Consensus 1 M~~~~~~~~iLVtGgtG~iG~~l~~~Ll~~-G~~~V~-~~~r~~ 42 (485)
|+. +++++|.|.| .|.+|+.+++.|.+. ...++. +.++.+
T Consensus 1 ~~~-m~~irIGIIG-~G~IG~~~a~~L~~~~~~~el~aV~dr~~ 42 (271)
T PRK13302 1 MSS-RPELRVAIAG-LGAIGKAIAQALDRGLPGLTLSAVAVRDP 42 (271)
T ss_pred CCC-CCeeEEEEEC-ccHHHHHHHHHHHhcCCCeEEEEEECCCH
Confidence 554 5678999998 899999999999874 224555 455543
|
|
| >cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase | Back alignment and domain information |
|---|
Probab=92.60 E-value=0.67 Score=41.72 Aligned_cols=77 Identities=13% Similarity=0.129 Sum_probs=51.2
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCC-HHHHHHHhc
Q 047227 4 EENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRH-KAQVLQALQ 82 (485)
Q Consensus 4 ~~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d-~~~l~~~~~ 82 (485)
...+++++|.|-+.-+|+.++..|+++| ..|++.+.+.-..... ......-.....| ...+.+.++
T Consensus 59 ~l~GK~vvVIGrS~iVGkPla~lL~~~~-AtVti~~~~~~~~~~~------------~~~~~hs~t~~~~~~~~l~~~~~ 125 (197)
T cd01079 59 RLYGKTITIINRSEVVGRPLAALLANDG-ARVYSVDINGIQVFTR------------GESIRHEKHHVTDEEAMTLDCLS 125 (197)
T ss_pred CCCCCEEEEECCCccchHHHHHHHHHCC-CEEEEEecCccccccc------------ccccccccccccchhhHHHHHhh
Confidence 3568999999999999999999999999 6999886543211000 0001111111123 224777888
Q ss_pred CCCEEEEcCCC
Q 047227 83 GAEVVFHMAAP 93 (485)
Q Consensus 83 ~~d~Vih~aa~ 93 (485)
.+|+||-..|.
T Consensus 126 ~ADIVIsAvG~ 136 (197)
T cd01079 126 QSDVVITGVPS 136 (197)
T ss_pred hCCEEEEccCC
Confidence 99999988883
|
The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional |
| >cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=92.58 E-value=1.3 Score=43.38 Aligned_cols=97 Identities=16% Similarity=0.143 Sum_probs=58.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHH---Hhc
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQ---ALQ 82 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~---~~~ 82 (485)
.+.+++|+|++|-+|..+++.+...| ..|.++++..... ..+.. -+... ..|..+.+.... ...
T Consensus 166 ~~~~vlI~g~~~~iG~~~~~~~~~~g-~~v~~~~~~~~~~-------~~~~~----~~~~~-~~~~~~~~~~~~~~~~~~ 232 (342)
T cd08266 166 PGETVLVHGAGSGVGSAAIQIAKLFG-ATVIATAGSEDKL-------ERAKE----LGADY-VIDYRKEDFVREVRELTG 232 (342)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcC-CEEEEEeCCHHHH-------HHHHH----cCCCe-EEecCChHHHHHHHHHhC
Confidence 45799999999999999999999999 5788776654311 01111 11221 235555433333 222
Q ss_pred --CCCEEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCc
Q 047227 83 --GAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSP 132 (485)
Q Consensus 83 --~~d~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~ 132 (485)
++|.++++++.. ....+++..+.. .+++.+|+.
T Consensus 233 ~~~~d~~i~~~g~~---------------~~~~~~~~l~~~--G~~v~~~~~ 267 (342)
T cd08266 233 KRGVDVVVEHVGAA---------------TWEKSLKSLARG--GRLVTCGAT 267 (342)
T ss_pred CCCCcEEEECCcHH---------------HHHHHHHHhhcC--CEEEEEecC
Confidence 589999988620 112344555544 378888764
|
This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone |
| >PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=92.58 E-value=0.39 Score=46.09 Aligned_cols=55 Identities=13% Similarity=0.159 Sum_probs=45.1
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCC
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGA 84 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 84 (485)
..+++|+|+|.+..+|+.++..|+++| ..|++..+... .+.+.++++
T Consensus 157 l~Gk~vvViGrs~iVG~Pla~lL~~~~-atVtv~hs~T~--------------------------------~l~~~~~~A 203 (285)
T PRK10792 157 TYGLNAVVVGASNIVGRPMSLELLLAG-CTVTVCHRFTK--------------------------------NLRHHVRNA 203 (285)
T ss_pred CCCCEEEEECCCcccHHHHHHHHHHCC-CeEEEEECCCC--------------------------------CHHHHHhhC
Confidence 457999999999999999999999998 68888754311 266677889
Q ss_pred CEEEEcCC
Q 047227 85 EVVFHMAA 92 (485)
Q Consensus 85 d~Vih~aa 92 (485)
|+||..+|
T Consensus 204 DIvi~avG 211 (285)
T PRK10792 204 DLLVVAVG 211 (285)
T ss_pred CEEEEcCC
Confidence 99998887
|
|
| >TIGR01035 hemA glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=92.57 E-value=0.19 Score=51.53 Aligned_cols=73 Identities=18% Similarity=0.208 Sum_probs=49.9
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCC
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGA 84 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 84 (485)
..+++|+|+| +|-+|..+++.|...|..+|++.+|....... +...+ +...+ +.+++.+++.++
T Consensus 178 l~~~~VlViG-aG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~-------la~~~---g~~~i-----~~~~l~~~l~~a 241 (417)
T TIGR01035 178 LKGKKALLIG-AGEMGELVAKHLLRKGVGKILIANRTYERAED-------LAKEL---GGEAV-----KFEDLEEYLAEA 241 (417)
T ss_pred ccCCEEEEEC-ChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHH-------HHHHc---CCeEe-----eHHHHHHHHhhC
Confidence 3568999998 59999999999999985589999887532110 11111 11222 234567778899
Q ss_pred CEEEEcCCC
Q 047227 85 EVVFHMAAP 93 (485)
Q Consensus 85 d~Vih~aa~ 93 (485)
|+||.+.+.
T Consensus 242 DvVi~aT~s 250 (417)
T TIGR01035 242 DIVISSTGA 250 (417)
T ss_pred CEEEECCCC
Confidence 999998763
|
This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA. |
| >TIGR01142 purT phosphoribosylglycinamide formyltransferase 2 | Back alignment and domain information |
|---|
Probab=92.48 E-value=0.41 Score=48.43 Aligned_cols=68 Identities=7% Similarity=0.080 Sum_probs=50.6
Q ss_pred EEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc--CCCE
Q 047227 9 LCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ--GAEV 86 (485)
Q Consensus 9 ~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--~~d~ 86 (485)
||+|+| +|..|..+++.+.+.| +.|.+++..+.... ... --.++..|..|.+.+.++++ ++|+
T Consensus 1 kililG-~g~~~~~l~~aa~~~G-~~v~~~d~~~~~~~------------~~~-ad~~~~~~~~d~~~l~~~~~~~~id~ 65 (380)
T TIGR01142 1 RVLLLG-SGELGKEVAIEAQRLG-VEVIAVDRYANAPA------------MQV-AHRSYVINMLDGDALRAVIEREKPDY 65 (380)
T ss_pred CEEEEC-CCHHHHHHHHHHHHcC-CEEEEEeCCCCCch------------hhh-CceEEEcCCCCHHHHHHHHHHhCCCE
Confidence 589999 6999999999999999 58888887643110 000 12456678899999988887 6999
Q ss_pred EEEcC
Q 047227 87 VFHMA 91 (485)
Q Consensus 87 Vih~a 91 (485)
|+-..
T Consensus 66 v~~~~ 70 (380)
T TIGR01142 66 IVPEI 70 (380)
T ss_pred EEecc
Confidence 98543
|
This enzyme is an alternative to PurN (TIGR00639) |
| >cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=92.47 E-value=0.53 Score=40.26 Aligned_cols=56 Identities=21% Similarity=0.232 Sum_probs=44.6
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcC
Q 047227 4 EENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQG 83 (485)
Q Consensus 4 ~~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~ 83 (485)
+.++++|+|.|.+.-+|..++..|.++| ..|++.++... ++.+.++.
T Consensus 25 ~~~gk~v~VvGrs~~vG~pla~lL~~~g-atV~~~~~~t~--------------------------------~l~~~v~~ 71 (140)
T cd05212 25 RLDGKKVLVVGRSGIVGAPLQCLLQRDG-ATVYSCDWKTI--------------------------------QLQSKVHD 71 (140)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCC-CEEEEeCCCCc--------------------------------CHHHHHhh
Confidence 3568999999999999999999999999 68887754211 25567778
Q ss_pred CCEEEEcCC
Q 047227 84 AEVVFHMAA 92 (485)
Q Consensus 84 ~d~Vih~aa 92 (485)
+|+|+-..+
T Consensus 72 ADIVvsAtg 80 (140)
T cd05212 72 ADVVVVGSP 80 (140)
T ss_pred CCEEEEecC
Confidence 899987777
|
NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional |
| >PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=92.46 E-value=0.23 Score=48.17 Aligned_cols=35 Identities=26% Similarity=0.303 Sum_probs=30.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCc
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDS 43 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~ 43 (485)
.++|.|.| +|.+|+.++..|.+.| ++|++.++.+.
T Consensus 3 ~~kIaViG-aG~mG~~iA~~la~~G-~~V~l~d~~~~ 37 (287)
T PRK08293 3 IKNVTVAG-AGVLGSQIAFQTAFHG-FDVTIYDISDE 37 (287)
T ss_pred ccEEEEEC-CCHHHHHHHHHHHhcC-CeEEEEeCCHH
Confidence 36899998 7999999999999999 59999998754
|
|
| >PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional | Back alignment and domain information |
|---|
Probab=92.46 E-value=0.52 Score=46.28 Aligned_cols=66 Identities=12% Similarity=0.162 Sum_probs=48.8
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCC
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGA 84 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 84 (485)
..+++|.|.| .|-||+.+++.|...| .+|.+.++..... +++..+ ...+++.++++++
T Consensus 134 l~g~tvgIvG-~G~IG~~vA~~l~afG-~~V~~~~~~~~~~----------------~~~~~~----~~~~~l~e~l~~a 191 (312)
T PRK15469 134 REDFTIGILG-AGVLGSKVAQSLQTWG-FPLRCWSRSRKSW----------------PGVQSF----AGREELSAFLSQT 191 (312)
T ss_pred cCCCEEEEEC-CCHHHHHHHHHHHHCC-CEEEEEeCCCCCC----------------CCceee----cccccHHHHHhcC
Confidence 4568999998 9999999999999999 6999998754310 111111 1234688999999
Q ss_pred CEEEEcCC
Q 047227 85 EVVFHMAA 92 (485)
Q Consensus 85 d~Vih~aa 92 (485)
|+|+.+..
T Consensus 192 Dvvv~~lP 199 (312)
T PRK15469 192 RVLINLLP 199 (312)
T ss_pred CEEEECCC
Confidence 99987765
|
|
| >PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=92.44 E-value=0.46 Score=46.02 Aligned_cols=34 Identities=21% Similarity=0.311 Sum_probs=31.0
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEee
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIAD 39 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~ 39 (485)
..+++|+|.|.+|.+|..++..|+++| +.|++.+
T Consensus 156 ~~Gk~V~viGrs~~mG~PmA~~L~~~g-~tVtv~~ 189 (296)
T PRK14188 156 LSGLNAVVIGRSNLVGKPMAQLLLAAN-ATVTIAH 189 (296)
T ss_pred CCCCEEEEEcCCcchHHHHHHHHHhCC-CEEEEEC
Confidence 468999999999999999999999999 6898874
|
|
| >cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=92.42 E-value=0.87 Score=42.99 Aligned_cols=36 Identities=19% Similarity=0.187 Sum_probs=30.5
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCC
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSD 42 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~ 42 (485)
.++.+|||+|++| +|..+++.+...| .+|.++++..
T Consensus 133 ~~~~~vli~g~~~-~G~~~~~~a~~~g-~~v~~~~~~~ 168 (271)
T cd05188 133 KPGDTVLVLGAGG-VGLLAAQLAKAAG-ARVIVTDRSD 168 (271)
T ss_pred CCCCEEEEECCCH-HHHHHHHHHHHcC-CeEEEEcCCH
Confidence 3467999999999 9999999999999 6888887653
|
The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro |
| >PRK08818 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.37 E-value=0.36 Score=48.45 Aligned_cols=33 Identities=21% Similarity=0.220 Sum_probs=29.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHhc-CCceEEEeecC
Q 047227 8 RLCVVTGGRGFAARHLVEMLIRY-DMFSVRIADLS 41 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~~-G~~~V~~~~r~ 41 (485)
++|.|.|++|.+|+++++.|.+. | ++|+++|+.
T Consensus 5 ~~I~IIGl~GliGgslA~alk~~~~-~~V~g~D~~ 38 (370)
T PRK08818 5 PVVGIVGSAGAYGRWLARFLRTRMQ-LEVIGHDPA 38 (370)
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCC-CEEEEEcCC
Confidence 69999999999999999999975 6 689888763
|
|
| >PRK12749 quinate/shikimate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=92.33 E-value=0.49 Score=45.90 Aligned_cols=36 Identities=14% Similarity=0.134 Sum_probs=30.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCC
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSD 42 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~ 42 (485)
.++++||.|+ |-.+++++..|...|..+|++++|..
T Consensus 123 ~~k~vlvlGa-GGaarAi~~~l~~~g~~~i~i~nRt~ 158 (288)
T PRK12749 123 KGKTMVLLGA-GGASTAIGAQGAIEGLKEIKLFNRRD 158 (288)
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence 4679999995 55599999999998866899999874
|
|
| >PLN02775 Probable dihydrodipicolinate reductase | Back alignment and domain information |
|---|
Probab=92.20 E-value=2.7 Score=40.41 Aligned_cols=97 Identities=8% Similarity=0.055 Sum_probs=54.9
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEE-eecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHH-HHh-
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRI-ADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVL-QAL- 81 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~-~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~-~~~- 81 (485)
.+.++|+|.|++|-.|+.+++.+.+.+ .++.. +++...- .+...+ +...++.. ....|.++.. ...
T Consensus 9 ~~~i~V~V~Ga~G~MG~~~~~av~~~~-~~Lv~~~~~~~~~-~~~~~~-------~~g~~v~~--~~~~dl~~~l~~~~~ 77 (286)
T PLN02775 9 GSAIPIMVNGCTGKMGHAVAEAAVSAG-LQLVPVSFTGPAG-VGVTVE-------VCGVEVRL--VGPSEREAVLSSVKA 77 (286)
T ss_pred CCCCeEEEECCCChHHHHHHHHHhcCC-CEEEEEecccccc-ccccce-------eccceeee--ecCccHHHHHHHhhc
Confidence 334699999999999999999999976 45443 4433210 000000 00012222 2234444333 222
Q ss_pred cCCC-EEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEE
Q 047227 82 QGAE-VVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLI 127 (485)
Q Consensus 82 ~~~d-~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V 127 (485)
+.+| ++|++.. | ..+...++.|.+.|+.-+|
T Consensus 78 ~~~~~VvIDFT~-------P--------~a~~~~~~~~~~~g~~~Vv 109 (286)
T PLN02775 78 EYPNLIVVDYTL-------P--------DAVNDNAELYCKNGLPFVM 109 (286)
T ss_pred cCCCEEEEECCC-------h--------HHHHHHHHHHHHCCCCEEE
Confidence 2489 8998764 2 2334678889999974333
|
|
| >cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2 | Back alignment and domain information |
|---|
Probab=92.13 E-value=2.4 Score=43.36 Aligned_cols=112 Identities=10% Similarity=0.063 Sum_probs=66.0
Q ss_pred EEEEEcCCCchHHHHHHHHHhcCC-----ceEEEeecCCccccCCccch-------h---------hhhhhhcCCCeEEE
Q 047227 9 LCVVTGGRGFAARHLVEMLIRYDM-----FSVRIADLSDSIALEPHEEQ-------G---------ILGEALRSGRAHYV 67 (485)
Q Consensus 9 ~iLVtGgtG~iG~~l~~~Ll~~G~-----~~V~~~~r~~~~~~~~~~~~-------~---------~~~~~~~~~~v~~~ 67 (485)
+|||.| .|-+|.++++.|...|. -.++++|.+.-...+...+. + .+......-+++.+
T Consensus 1 kVlvVG-aGGlGcE~lKnLal~Gv~~g~~G~I~IvD~D~Ie~SNLnRQfLf~~~dIGk~Ka~vAa~~l~~lNp~v~I~a~ 79 (435)
T cd01490 1 KVFLVG-AGAIGCELLKNFALMGVGTGESGEITVTDMDNIEKSNLNRQFLFRPHDVGKPKSEVAAAAVKAMNPDLKITAL 79 (435)
T ss_pred CEEEEC-CCHHHHHHHHHHHHcCCCcCCCCeEEEECCCCccccccCcCccCChhHcCcHHHHHHHHHHHHHCCCCEEEEE
Confidence 588998 88999999999999985 58999987643221111110 0 00111112234444
Q ss_pred EecCCCHH--HH-HHHhcCCCEEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCccccc
Q 047227 68 SFDLRHKA--QV-LQALQGAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVVF 136 (485)
Q Consensus 68 ~~Dl~d~~--~l-~~~~~~~d~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy~ 136 (485)
...+.... .+ .+.++++|+|+.+.. |+..-..+-+.|...++ .+|..++.+-+|
T Consensus 80 ~~~v~~~~~~~~~~~f~~~~DvVi~alD--------------n~~aR~~vn~~C~~~~i-Pli~~gt~G~~G 136 (435)
T cd01490 80 QNRVGPETEHIFNDEFWEKLDGVANALD--------------NVDARMYVDRRCVYYRK-PLLESGTLGTKG 136 (435)
T ss_pred ecccChhhhhhhhHHHhcCCCEEEECCC--------------CHHHHHHHHHHHHHhCC-CEEEEeccccee
Confidence 44443211 12 245678999997642 23334467788888875 577777665554
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1. |
| >cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3 | Back alignment and domain information |
|---|
Probab=92.07 E-value=2 Score=41.51 Aligned_cols=80 Identities=10% Similarity=0.074 Sum_probs=50.8
Q ss_pred EEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccch-------h---------hhhhhhcCCCeEEEEecCC
Q 047227 9 LCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQ-------G---------ILGEALRSGRAHYVSFDLR 72 (485)
Q Consensus 9 ~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~-------~---------~~~~~~~~~~v~~~~~Dl~ 72 (485)
+|||.| .|-+|.++++.|...|.-+++++|.+.-...+...+. + .+......-+++.+..++.
T Consensus 1 kVlVVG-aGGlG~eilknLal~Gvg~I~IvD~D~Ve~SNLnRQfLf~~~dIGk~KAevaa~~l~~~np~v~I~~~~~~i~ 79 (291)
T cd01488 1 KILVIG-AGGLGCELLKNLALSGFRNIHVIDMDTIDVSNLNRQFLFREKDIGKPKAEVAAKFVNDRVPGVNVTPHFGKIQ 79 (291)
T ss_pred CEEEEC-CCHHHHHHHHHHHHcCCCeEEEECCCEecccccCcCcccChHHcchHHHHHHHHHHHHHCCCCEEEEEecccC
Confidence 588988 8899999999999999778999887532211111110 0 0111111234566667776
Q ss_pred CHHHHHHHhcCCCEEEEcC
Q 047227 73 HKAQVLQALQGAEVVFHMA 91 (485)
Q Consensus 73 d~~~l~~~~~~~d~Vih~a 91 (485)
+.+ .+.++++|+||.+.
T Consensus 80 ~~~--~~f~~~fdvVi~al 96 (291)
T cd01488 80 DKD--EEFYRQFNIIICGL 96 (291)
T ss_pred chh--HHHhcCCCEEEECC
Confidence 542 46778999999754
|
UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2. |
| >TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p | Back alignment and domain information |
|---|
Probab=92.05 E-value=1.3 Score=47.34 Aligned_cols=35 Identities=14% Similarity=0.247 Sum_probs=30.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCC
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSD 42 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~ 42 (485)
..+|||.| .|-+|+++++.|...|--+++++|.+.
T Consensus 338 ~~kVLIvG-aGGLGs~VA~~La~~GVg~ItlVD~D~ 372 (664)
T TIGR01381 338 QLKVLLLG-AGTLGCNVARCLIGWGVRHITFVDNGK 372 (664)
T ss_pred cCeEEEEC-CcHHHHHHHHHHHHcCCCeEEEEcCCE
Confidence 46899998 788999999999999977899998764
|
This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy. |
| >PLN03154 putative allyl alcohol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.03 E-value=1.3 Score=44.23 Aligned_cols=37 Identities=11% Similarity=-0.017 Sum_probs=30.9
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCC
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSD 42 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~ 42 (485)
..+.+|||+|++|-+|...++.+...| .+|.+++++.
T Consensus 157 ~~g~~VlV~GaaG~vG~~aiqlAk~~G-~~Vi~~~~~~ 193 (348)
T PLN03154 157 KKGDSVFVSAASGAVGQLVGQLAKLHG-CYVVGSAGSS 193 (348)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHcC-CEEEEEcCCH
Confidence 346799999999999999999999999 5787776543
|
|
| >PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=91.99 E-value=0.29 Score=47.49 Aligned_cols=40 Identities=20% Similarity=0.258 Sum_probs=33.3
Q ss_pred CCCCCCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCcc
Q 047227 1 MSGEENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSI 44 (485)
Q Consensus 1 M~~~~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~ 44 (485)
|+.. .++|.|.| +|.+|+.++..|+..| +.|+++|+.+..
T Consensus 1 ~~~~--~~~V~ViG-aG~mG~~iA~~~a~~G-~~V~l~d~~~~~ 40 (286)
T PRK07819 1 MSDA--IQRVGVVG-AGQMGAGIAEVCARAG-VDVLVFETTEEL 40 (286)
T ss_pred CCCC--ccEEEEEc-ccHHHHHHHHHHHhCC-CEEEEEECCHHH
Confidence 5443 35899998 6999999999999999 599999988653
|
|
| >PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional | Back alignment and domain information |
|---|
Probab=91.98 E-value=0.8 Score=47.07 Aligned_cols=36 Identities=17% Similarity=0.138 Sum_probs=30.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCcc
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSI 44 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~ 44 (485)
++|+|-|.| .|++|..++..|.+ | ++|+++|+.+..
T Consensus 5 ~~mkI~vIG-lGyvGlpmA~~la~-~-~~V~g~D~~~~~ 40 (425)
T PRK15182 5 DEVKIAIIG-LGYVGLPLAVEFGK-S-RQVVGFDVNKKR 40 (425)
T ss_pred CCCeEEEEC-cCcchHHHHHHHhc-C-CEEEEEeCCHHH
Confidence 347899996 99999999999665 7 699999998653
|
|
| >PRK07574 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.90 E-value=0.35 Score=48.80 Aligned_cols=68 Identities=13% Similarity=0.073 Sum_probs=47.3
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCC
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGA 84 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 84 (485)
..+|+|.|.| .|-||+.+++.|...| .+|.+.+|..... . . ....++++ ..+++++++.+
T Consensus 190 L~gktVGIvG-~G~IG~~vA~~l~~fG-~~V~~~dr~~~~~-~--~--------~~~~g~~~-------~~~l~ell~~a 249 (385)
T PRK07574 190 LEGMTVGIVG-AGRIGLAVLRRLKPFD-VKLHYTDRHRLPE-E--V--------EQELGLTY-------HVSFDSLVSVC 249 (385)
T ss_pred cCCCEEEEEC-CCHHHHHHHHHHHhCC-CEEEEECCCCCch-h--h--------HhhcCcee-------cCCHHHHhhcC
Confidence 4578999998 8999999999999999 5999998764210 0 0 00112221 12477888999
Q ss_pred CEEEEcCC
Q 047227 85 EVVFHMAA 92 (485)
Q Consensus 85 d~Vih~aa 92 (485)
|+|+.+..
T Consensus 250 DvV~l~lP 257 (385)
T PRK07574 250 DVVTIHCP 257 (385)
T ss_pred CEEEEcCC
Confidence 99887665
|
|
| >PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=91.89 E-value=0.57 Score=44.99 Aligned_cols=55 Identities=15% Similarity=0.196 Sum_probs=44.2
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCC
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGA 84 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 84 (485)
..+++|+|.|.+..+|+.++..|+++| ..|++..... ..+.+.++.+
T Consensus 155 l~Gk~vvVvGrs~~VG~Pla~lL~~~g-AtVtv~hs~t--------------------------------~~l~~~~~~A 201 (285)
T PRK14191 155 IKGKDVVIIGASNIVGKPLAMLMLNAG-ASVSVCHILT--------------------------------KDLSFYTQNA 201 (285)
T ss_pred CCCCEEEEECCCchhHHHHHHHHHHCC-CEEEEEeCCc--------------------------------HHHHHHHHhC
Confidence 468999999999999999999999999 6888763211 1356777889
Q ss_pred CEEEEcCC
Q 047227 85 EVVFHMAA 92 (485)
Q Consensus 85 d~Vih~aa 92 (485)
|+||-..+
T Consensus 202 DIvV~AvG 209 (285)
T PRK14191 202 DIVCVGVG 209 (285)
T ss_pred CEEEEecC
Confidence 99998877
|
|
| >COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.87 E-value=1 Score=43.23 Aligned_cols=70 Identities=9% Similarity=0.072 Sum_probs=52.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc--CC
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ--GA 84 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--~~ 84 (485)
..||++.| +|=+|..++-.+.+.| .+|+.+||=..... -+ ---..+..|+.|.+++..+++ ++
T Consensus 12 a~kvmLLG-SGELGKEvaIe~QRLG-~eViAVDrY~~APA------------mq-VAhrs~Vi~MlD~~al~avv~rekP 76 (394)
T COG0027 12 ATKVMLLG-SGELGKEVAIEAQRLG-VEVIAVDRYANAPA------------MQ-VAHRSYVIDMLDGDALRAVVEREKP 76 (394)
T ss_pred CeEEEEec-CCccchHHHHHHHhcC-CEEEEecCcCCChh------------hh-hhhheeeeeccCHHHHHHHHHhhCC
Confidence 46899987 9999999999999999 69999998543110 00 011345679999999999986 49
Q ss_pred CEEEEcC
Q 047227 85 EVVFHMA 91 (485)
Q Consensus 85 d~Vih~a 91 (485)
|+||--.
T Consensus 77 d~IVpEi 83 (394)
T COG0027 77 DYIVPEI 83 (394)
T ss_pred Ceeeehh
Confidence 9888543
|
|
| >PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=91.83 E-value=0.44 Score=45.75 Aligned_cols=55 Identities=13% Similarity=0.288 Sum_probs=43.7
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCC
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGA 84 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 84 (485)
..+++|.|.|.+|.+|..++..|+++| +.|++.... . . .+.+..+.+
T Consensus 156 l~Gk~v~vIG~S~ivG~Pla~lL~~~g-atVtv~~s~-t----------------------------~---~l~~~~~~A 202 (284)
T PRK14179 156 LEGKHAVVIGRSNIVGKPMAQLLLDKN-ATVTLTHSR-T----------------------------R---NLAEVARKA 202 (284)
T ss_pred CCCCEEEEECCCCcCcHHHHHHHHHCC-CEEEEECCC-C----------------------------C---CHHHHHhhC
Confidence 468999999999999999999999999 688876211 0 0 255667789
Q ss_pred CEEEEcCC
Q 047227 85 EVVFHMAA 92 (485)
Q Consensus 85 d~Vih~aa 92 (485)
|+||-+.|
T Consensus 203 DIVI~avg 210 (284)
T PRK14179 203 DILVVAIG 210 (284)
T ss_pred CEEEEecC
Confidence 99998887
|
|
| >PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=91.77 E-value=0.51 Score=45.30 Aligned_cols=55 Identities=11% Similarity=0.232 Sum_probs=44.3
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCC
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGA 84 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 84 (485)
..+++|+|+|.+..+|+.++..|+++| ..|++...... .+.+..+++
T Consensus 162 l~Gk~vvViGrs~iVGkPla~lL~~~~-atVtv~hs~T~--------------------------------~l~~~~~~A 208 (287)
T PRK14176 162 IEGKNAVIVGHSNVVGKPMAAMLLNRN-ATVSVCHVFTD--------------------------------DLKKYTLDA 208 (287)
T ss_pred CCCCEEEEECCCcccHHHHHHHHHHCC-CEEEEEeccCC--------------------------------CHHHHHhhC
Confidence 467999999999999999999999998 68887753211 255666789
Q ss_pred CEEEEcCC
Q 047227 85 EVVFHMAA 92 (485)
Q Consensus 85 d~Vih~aa 92 (485)
|+||..+|
T Consensus 209 DIvv~AvG 216 (287)
T PRK14176 209 DILVVATG 216 (287)
T ss_pred CEEEEccC
Confidence 99998887
|
|
| >PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=91.77 E-value=0.55 Score=45.14 Aligned_cols=55 Identities=15% Similarity=0.214 Sum_probs=43.9
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCC
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGA 84 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 84 (485)
..+++|+|.|.++.+|+.++..|.++| ..|++..+.. .++.+.++.+
T Consensus 156 l~Gk~vvViGrs~iVGkPla~lL~~~~-atVt~~hs~t--------------------------------~~l~~~~~~A 202 (285)
T PRK14189 156 LRGAHAVVIGRSNIVGKPMAMLLLQAG-ATVTICHSKT--------------------------------RDLAAHTRQA 202 (285)
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHCC-CEEEEecCCC--------------------------------CCHHHHhhhC
Confidence 467999999999999999999999998 6888753221 1255677889
Q ss_pred CEEEEcCC
Q 047227 85 EVVFHMAA 92 (485)
Q Consensus 85 d~Vih~aa 92 (485)
|+||-.+|
T Consensus 203 DIVV~avG 210 (285)
T PRK14189 203 DIVVAAVG 210 (285)
T ss_pred CEEEEcCC
Confidence 99998887
|
|
| >PRK06153 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=91.74 E-value=2.5 Score=42.34 Aligned_cols=107 Identities=12% Similarity=0.135 Sum_probs=66.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccch---------------hhhhhhhc--CCCeEEEE
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQ---------------GILGEALR--SGRAHYVS 68 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~---------------~~~~~~~~--~~~v~~~~ 68 (485)
.+.+|+|.| .|-+|++++..|.+.|--+++++|...-...+...+. ..+...+. ..++..+.
T Consensus 175 ~~~~VaIVG-~GG~GS~Va~~LAR~GVgeI~LVD~D~Ve~SNLnRQ~gaf~~~DvGk~~~KVevaa~rl~~in~~I~~~~ 253 (393)
T PRK06153 175 EGQRIAIIG-LGGTGSYILDLVAKTPVREIHLFDGDDFLQHNAFRSPGAASIEELREAPKKVDYFKSRYSNMRRGIVPHP 253 (393)
T ss_pred hhCcEEEEc-CCccHHHHHHHHHHcCCCEEEEECCCEecccccccccccCCHhHcCCcchHHHHHHHHHHHhCCeEEEEe
Confidence 356899998 7889999999999999768999987522111111110 01111111 23566665
Q ss_pred ecCCCHHHHHHHhcCCCEEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEec
Q 047227 69 FDLRHKAQVLQALQGAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTS 130 (485)
Q Consensus 69 ~Dl~d~~~l~~~~~~~d~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~S 130 (485)
..+ +++.+. .+.++|+||.|.. |..+-..+.++|.+.++. +|.++
T Consensus 254 ~~I-~~~n~~-~L~~~DiV~dcvD--------------n~~aR~~ln~~a~~~gIP-~Id~G 298 (393)
T PRK06153 254 EYI-DEDNVD-ELDGFTFVFVCVD--------------KGSSRKLIVDYLEALGIP-FIDVG 298 (393)
T ss_pred ecC-CHHHHH-HhcCCCEEEEcCC--------------CHHHHHHHHHHHHHcCCC-EEEee
Confidence 555 555544 6789999998874 222334566788888763 56544
|
|
| >TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=91.69 E-value=1.5 Score=43.93 Aligned_cols=97 Identities=15% Similarity=0.046 Sum_probs=56.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCH---HHHHHHhc
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHK---AQVLQALQ 82 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~---~~l~~~~~ 82 (485)
.+.+|||.| .|-+|...++.+...|..+|.++++.+.+ .+....-++..+ .|..+. +.+.++..
T Consensus 176 ~g~~VlV~G-~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~-----------~~~~~~~Ga~~~-i~~~~~~~~~~i~~~~~ 242 (358)
T TIGR03451 176 RGDSVAVIG-CGGVGDAAIAGAALAGASKIIAVDIDDRK-----------LEWAREFGATHT-VNSSGTDPVEAIRALTG 242 (358)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHHcCCCeEEEEcCCHHH-----------HHHHHHcCCceE-EcCCCcCHHHHHHHHhC
Confidence 467999997 59999999999999994358777665431 111111223222 233322 33444443
Q ss_pred --CCCEEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecC
Q 047227 83 --GAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSS 131 (485)
Q Consensus 83 --~~d~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS 131 (485)
++|+||++.+.. ......+++++..| ++|.++.
T Consensus 243 ~~g~d~vid~~g~~--------------~~~~~~~~~~~~~G--~iv~~G~ 277 (358)
T TIGR03451 243 GFGADVVIDAVGRP--------------ETYKQAFYARDLAG--TVVLVGV 277 (358)
T ss_pred CCCCCEEEECCCCH--------------HHHHHHHHHhccCC--EEEEECC
Confidence 599999988721 01123455555555 7887664
|
Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione. |
| >PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=91.68 E-value=0.31 Score=47.88 Aligned_cols=34 Identities=15% Similarity=0.311 Sum_probs=30.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCc
Q 047227 8 RLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDS 43 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~ 43 (485)
++|.|.| .|.+|..++..|.+.| ++|+++++...
T Consensus 5 ~~I~vIG-aG~mG~~iA~~l~~~g-~~V~~~d~~~~ 38 (311)
T PRK06130 5 QNLAIIG-AGTMGSGIAALFARKG-LQVVLIDVMEG 38 (311)
T ss_pred cEEEEEC-CCHHHHHHHHHHHhCC-CeEEEEECCHH
Confidence 6899997 7999999999999999 58999988654
|
|
| >cd08230 glucose_DH Glucose dehydrogenase | Back alignment and domain information |
|---|
Probab=91.65 E-value=1.4 Score=43.92 Aligned_cols=34 Identities=24% Similarity=0.225 Sum_probs=28.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecC
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLS 41 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~ 41 (485)
.+.+|+|+|+ |-+|...++.+...| .+|+++++.
T Consensus 172 ~g~~vlI~G~-G~vG~~a~q~ak~~G-~~vi~~~~~ 205 (355)
T cd08230 172 NPRRALVLGA-GPIGLLAALLLRLRG-FEVYVLNRR 205 (355)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcC-CeEEEEecC
Confidence 4679999985 999999999998899 488888874
|
Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai |
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 485 | ||||
| 1r66_A | 337 | Crystal Structure Of Desiv (Dtdp-Glucose 4,6-Dehydr | 4e-11 | ||
| 3icp_A | 312 | Crystal Structure Of Udp-Galactose 4-Epimerase Leng | 1e-10 | ||
| 1r6d_A | 337 | Crystal Structure Of Desiv Double Mutant (Dtdp-Gluc | 2e-10 | ||
| 3aw9_A | 308 | Structure Of Udp-Galactose 4-Epimerase Mutant Lengt | 6e-10 | ||
| 1sb8_A | 352 | Crystal Structure Of Pseudomonas Aeruginosa Udp-N-A | 9e-10 | ||
| 1bxk_A | 355 | Dtdp-Glucose 4,6-Dehydratase From E. Coli Length = | 2e-08 | ||
| 2hun_A | 336 | Crystal Structure Of Hypothetical Protein Ph0414 Fr | 2e-08 | ||
| 3ruc_A | 351 | Specific Recognition Of N-Acetylated Substrates And | 3e-08 | ||
| 3ru9_A | 351 | Specific Recognition Of N-Acetylated Substrates And | 4e-08 | ||
| 3ru7_A | 351 | Specific Recognition Of N-Acetylated Substrates And | 4e-08 | ||
| 3lu1_A | 364 | Crystal Structure Analysis Of Wbgu: A Udp-Galnac 4- | 5e-08 | ||
| 2p5u_A | 311 | Crystal Structure Of Thermus Thermophilus Hb8 Udp-G | 8e-07 | ||
| 1g1a_A | 361 | The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydra | 2e-06 | ||
| 3ehe_A | 313 | Crystal Structure Of Udp-Glucose 4 Epimerase (Gale- | 5e-06 | ||
| 2c5e_A | 379 | Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana | 3e-05 | ||
| 2c59_A | 379 | Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana | 4e-05 | ||
| 2rh8_A | 338 | Structure Of Apo Anthocyanidin Reductase From Vitis | 4e-05 | ||
| 3vps_A | 321 | Structure Of A Novel Nad Dependent-Ndp-Hexosamine 5 | 5e-05 | ||
| 2c54_A | 379 | Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana | 7e-05 | ||
| 2c5a_A | 379 | Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana | 1e-04 | ||
| 2p4h_X | 322 | Crystal Structure Of Vestitone Reductase From Alfal | 1e-04 | ||
| 4egb_A | 346 | 3.0 Angstrom Resolution Crystal Structure Of Dtdp-G | 6e-04 | ||
| 4ef7_B | 337 | Udp-Xylose Synthase Length = 337 | 7e-04 | ||
| 4id9_A | 347 | Crystal Structure Of A Short-Chain DehydrogenaseRED | 8e-04 |
| >pdb|1R66|A Chain A, Crystal Structure Of Desiv (Dtdp-Glucose 4,6-Dehydratase) From Streptomyces Venezuelae With Nad And Tyd Bound Length = 337 | Back alignment and structure |
|
| >pdb|3ICP|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase Length = 312 | Back alignment and structure |
|
| >pdb|1R6D|A Chain A, Crystal Structure Of Desiv Double Mutant (Dtdp-Glucose 4,6- Dehydratase) From Streptomyces Venezuelae With Nad And Dau Bound Length = 337 | Back alignment and structure |
|
| >pdb|3AW9|A Chain A, Structure Of Udp-Galactose 4-Epimerase Mutant Length = 308 | Back alignment and structure |
|
| >pdb|1SB8|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa Udp-N-Acetylglucosamine 4- Epimerase Complexed With Udp-N-Acetylgalactosamine Length = 352 | Back alignment and structure |
|
| >pdb|1BXK|A Chain A, Dtdp-Glucose 4,6-Dehydratase From E. Coli Length = 355 | Back alignment and structure |
|
| >pdb|2HUN|A Chain A, Crystal Structure Of Hypothetical Protein Ph0414 From Pyrococcus Horikoshii Ot3 Length = 336 | Back alignment and structure |
|
| >pdb|3RUC|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain Flexibility In Wbgu: A Udp-Galnac 4-Epimerase Length = 351 | Back alignment and structure |
|
| >pdb|3RU9|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain Flexibility In Wbgu: A Udp-Galnac 4-Epimerase Length = 351 | Back alignment and structure |
|
| >pdb|3RU7|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain Flexibility In Wbgu: A Udp-Galnac 4-Epimerase Length = 351 | Back alignment and structure |
|
| >pdb|3LU1|A Chain A, Crystal Structure Analysis Of Wbgu: A Udp-Galnac 4-Epimerase Length = 364 | Back alignment and structure |
|
| >pdb|2P5U|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose 4- Epimerase Complex With Nad Length = 311 | Back alignment and structure |
|
| >pdb|1G1A|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase (Rmlb)from Salmonella Enterica Serovar Typhimurium Length = 361 | Back alignment and structure |
|
| >pdb|3EHE|A Chain A, Crystal Structure Of Udp-Glucose 4 Epimerase (Gale-1) From Archaeoglobus Fulgidus Length = 313 | Back alignment and structure |
|
| >pdb|2C5E|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana), K217a, With Gdp-Alpha-D-Mannose Bound In The Active Site. Length = 379 | Back alignment and structure |
|
| >pdb|2C59|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana), With Gdp-Alpha-D-Mannose And Gdp-Beta-L-Galactose Bound In The Active Site. Length = 379 | Back alignment and structure |
|
| >pdb|2RH8|A Chain A, Structure Of Apo Anthocyanidin Reductase From Vitis Vinifera Length = 338 | Back alignment and structure |
|
| >pdb|3VPS|A Chain A, Structure Of A Novel Nad Dependent-Ndp-Hexosamine 5,6-Dehydratase, Tuna, Involved In Tunicamycin Biosynthesis Length = 321 | Back alignment and structure |
|
| >pdb|2C54|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana), K178r, With Gdp-Beta-L-Gulose And Gdp-4-Keto-Beta-L-Gulose Bound In Active Site. Length = 379 | Back alignment and structure |
|
| >pdb|2C5A|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana), Y174f, With Gdp-Beta-L-Galactose Bound In The Active Site Length = 379 | Back alignment and structure |
|
| >pdb|2P4H|X Chain X, Crystal Structure Of Vestitone Reductase From Alfalfa (Medicago Sativa L.) Length = 322 | Back alignment and structure |
|
| >pdb|4EGB|A Chain A, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose 4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str. Ames In Complex With Nad Length = 346 | Back alignment and structure |
|
| >pdb|4ID9|A Chain A, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE SUPERFAMILY Protein From Agrobacterium Tumefaciens (Target Efi-506441) With Bound Nad, Monoclinic Form 1 Length = 347 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 485 | |||
| 2x4g_A | 342 | Nucleoside-diphosphate-sugar epimerase; isomerase; | 4e-84 | |
| 1sb8_A | 352 | WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN | 1e-45 | |
| 3m2p_A | 311 | UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J | 9e-45 | |
| 2q1s_A | 377 | Putative nucleotide sugar epimerase/ dehydratase; | 7e-44 | |
| 3ruf_A | 351 | WBGU; rossmann fold, UDP-hexose 4-epimerase, isome | 1e-42 | |
| 3ajr_A | 317 | NDP-sugar epimerase; L-threonine dehydrogenase, L- | 3e-39 | |
| 3ko8_A | 312 | NAD-dependent epimerase/dehydratase; isomerase, UD | 2e-36 | |
| 3ehe_A | 313 | UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, | 8e-36 | |
| 2x6t_A | 357 | ADP-L-glycero-D-manno-heptose-6-epimerase; isomera | 2e-35 | |
| 3vps_A | 321 | TUNA, NAD-dependent epimerase/dehydratase; tunicam | 4e-35 | |
| 2q1w_A | 333 | Putative nucleotide sugar epimerase/ dehydratase; | 9e-35 | |
| 3sxp_A | 362 | ADP-L-glycero-D-mannoheptose-6-epimerase; rossman | 1e-34 | |
| 1eq2_A | 310 | ADP-L-glycero-D-mannoheptose 6-epimerase; N-termin | 3e-34 | |
| 3ay3_A | 267 | NAD-dependent epimerase/dehydratase; glucuronic ac | 3e-34 | |
| 3rft_A | 267 | Uronate dehydrogenase; apoenzyme, rossmann fold, N | 4e-33 | |
| 2yy7_A | 312 | L-threonine dehydrogenase; thermolabIle, flavobact | 1e-28 | |
| 2c5a_A | 379 | GDP-mannose-3', 5'-epimerase; short chain dehydrat | 3e-27 | |
| 2p5y_A | 311 | UDP-glucose 4-epimerase; TTHA0591, structural geno | 4e-26 | |
| 3st7_A | 369 | Capsular polysaccharide synthesis enzyme CAP5F; ro | 7e-26 | |
| 3dhn_A | 227 | NAD-dependent epimerase/dehydratase; reductase, PF | 2e-24 | |
| 2v6g_A | 364 | Progesterone 5-beta-reductase; tyrosine-dependent | 1e-22 | |
| 3slg_A | 372 | PBGP3 protein; structural genomics, seattle struct | 3e-22 | |
| 2bll_A | 345 | Protein YFBG; decarboxylase, short chain dehydroge | 1e-21 | |
| 2pzm_A | 330 | Putative nucleotide sugar epimerase/ dehydratase; | 1e-18 | |
| 2p4h_X | 322 | Vestitone reductase; NADPH-dependent reductase, is | 6e-18 | |
| 2c29_D | 337 | Dihydroflavonol 4-reductase; flavonoids, short deh | 2e-17 | |
| 1i24_A | 404 | Sulfolipid biosynthesis protein SQD1; SDR, short-c | 5e-17 | |
| 2hrz_A | 342 | AGR_C_4963P, nucleoside-diphosphate-sugar epimeras | 2e-16 | |
| 1y1p_A | 342 | ARII, aldehyde reductase II; rossmann fold, short | 5e-16 | |
| 4dqv_A | 478 | Probable peptide synthetase NRP (peptide synthase; | 1e-15 | |
| 2rh8_A | 338 | Anthocyanidin reductase; flavonoids, rossmann fold | 4e-15 | |
| 3gpi_A | 286 | NAD-dependent epimerase/dehydratase; structural ge | 1e-14 | |
| 1rkx_A | 357 | CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; | 1e-14 | |
| 2b69_A | 343 | UDP-glucuronate decarboxylase 1; UDP-glucoronic ac | 4e-14 | |
| 1hdo_A | 206 | Biliverdin IX beta reductase; foetal metabolism, H | 2e-13 | |
| 3ew7_A | 221 | LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend | 5e-13 | |
| 3h2s_A | 224 | Putative NADH-flavin reductase; Q03B84, NESG, LCR1 | 2e-12 | |
| 1orr_A | 347 | CDP-tyvelose-2-epimerase; rossmann fold, short-cha | 3e-12 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 5e-12 | |
| 1xq6_A | 253 | Unknown protein; structural genomics, protein stru | 5e-12 | |
| 3r6d_A | 221 | NAD-dependent epimerase/dehydratase; structural ge | 6e-12 | |
| 3dqp_A | 219 | Oxidoreductase YLBE; alpha-beta protein., structur | 7e-12 | |
| 2bka_A | 242 | CC3, TAT-interacting protein TIP30; NADPH, PEG600, | 5e-11 | |
| 1qyc_A | 308 | Phenylcoumaran benzylic ether reductase PT1; NADPH | 7e-11 | |
| 1r6d_A | 337 | TDP-glucose-4,6-dehydratase; rossmann fold, short- | 7e-11 | |
| 2gn4_A | 344 | FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann | 2e-10 | |
| 3qvo_A | 236 | NMRA family protein; structural genomics, PSI-biol | 8e-10 | |
| 1qyd_A | 313 | Pinoresinol-lariciresinol reductase; NADPH-depende | 4e-09 | |
| 1z7e_A | 660 | Protein aRNA; rossmann fold, OB-like fold, hydrola | 2e-08 | |
| 2wm3_A | 299 | NMRA-like family domain containing protein 1; unkn | 7e-08 | |
| 2gas_A | 307 | Isoflavone reductase; NADPH-dependent reductase, o | 3e-07 | |
| 2hun_A | 336 | 336AA long hypothetical DTDP-glucose 4,6-dehydrat; | 4e-07 | |
| 4egb_A | 346 | DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce | 6e-07 | |
| 3e48_A | 289 | Putative nucleoside-diphosphate-sugar epimerase; a | 1e-06 | |
| 2a35_A | 215 | Hypothetical protein PA4017; alpha-beta-alpha sand | 2e-06 | |
| 2ydy_A | 315 | Methionine adenosyltransferase 2 subunit beta; oxi | 3e-06 | |
| 3c1o_A | 321 | Eugenol synthase; phenylpropene, PIP reductase, sh | 9e-06 | |
| 2jl1_A | 287 | Triphenylmethane reductase; oxidoreductase, biorem | 9e-06 | |
| 3i6i_A | 346 | Putative leucoanthocyanidin reductase 1; rossmann | 3e-05 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 4e-05 | |
| 2zcu_A | 286 | Uncharacterized oxidoreductase YTFG; alpha-beta sa | 5e-05 | |
| 2r6j_A | 318 | Eugenol synthase 1; phenylpropene, PIP reductase, | 5e-05 | |
| 1oc2_A | 348 | DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnos | 5e-05 | |
| 1vl0_A | 292 | DTDP-4-dehydrorhamnose reductase, RFBD ortholog; s | 2e-04 | |
| 2ggs_A | 273 | 273AA long hypothetical DTDP-4-dehydrorhamnose red | 2e-04 | |
| 1xgk_A | 352 | Nitrogen metabolite repression regulator NMRA; ros | 3e-04 | |
| 1ek6_A | 348 | UDP-galactose 4-epimerase; short-chain dehydrogena | 4e-04 | |
| 1gy8_A | 397 | UDP-galactose 4-epimerase; oxidoreductase; HET: NA | 5e-04 |
| >2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa} Length = 342 | Back alignment and structure |
|---|
Score = 262 bits (671), Expect = 4e-84
Identities = 61/350 (17%), Positives = 118/350 (33%), Gaps = 38/350 (10%)
Query: 12 VTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDL 71
V G G H + + + S + L ++
Sbjct: 18 VLGATGLLGHHAARAIRAAGH-DLVLIHRPSSQI-----------QRLAYLEPECRVAEM 65
Query: 72 RHKAQVLQALQGAEVVFHMAAPNS-SINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTS 130
A + +AL+G + V A + + + T AC + +V R++Y
Sbjct: 66 LDHAGLERALRGLDGVIFSAGYYPSRPRRWQEEVASALGQTNPFYAACLQARVPRILYVG 125
Query: 131 SPSVVFDGVHGIINGNEALPYPP--KHNDFYSATKAEGEALVIKANGTNGLLTCCIRPSS 188
S + G+ G+E L Y Y K + + NGL P
Sbjct: 126 SAYAMPRHPQGLP-GHEGLFYDSLPSGKSSYVLCKWALDEQAREQAR-NGLPVVIGIPGM 183
Query: 189 IFGPGD-RLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICAERALASEVTVA 247
+ G D ++ A G+ + N A + A
Sbjct: 184 VLGELDIGPTTGRVITAIGNGEMTHYVAGQRN---VIDAAEAGRGLLMA----------L 230
Query: 248 EK-AAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELTYRLLGP 306
E+ G+ Y +T +++ + I E LG P+ + + +A + L YR+ G
Sbjct: 231 ERGRIGERYLLTG-HNLEMADLTRRIAELLGQPAPQ-PMSMAMARALATLGRLRYRVSG- 287
Query: 307 YGMKVPQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSY 356
++P L + + +++ + D KA++ LG+ L++ + R +D +
Sbjct: 288 ---QLPLLDETAIEVMAGGQFLDGRKAREELGFFSTTALDDTLLRAIDWF 334
|
| >1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A* Length = 352 | Back alignment and structure |
|---|
Score = 162 bits (411), Expect = 1e-45
Identities = 78/373 (20%), Positives = 127/373 (34%), Gaps = 69/373 (18%)
Query: 4 EENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIAD-LSD--SIALEPHEEQGILGEALR 60
++ ++TG GF +L+E L++ D V D + L+ L +
Sbjct: 24 PAQPKVWLITGVAGFIGSNLLETLLKLD-QKVVGLDNFATGHQRNLDEVRS---LVSEKQ 79
Query: 61 SGRAHYVSFDLRHKAQVLQALQGAEVVFHMAAPNS---SINNHKLHHSVNVEGTKNVIDA 117
++ D+R+ A G + V H AA S SIN+ ++ N++G N++ A
Sbjct: 80 WSNFKFIQGDIRNLDDCNNACAGVDYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIA 139
Query: 118 CAELKVKRLIYTSSPSVVFDGVHGIINGNEALPYPPKHND----FYSATKAEGEALVIKA 173
+ KV+ Y +S S +G + LP Y+ TK E
Sbjct: 140 ARDAKVQSFTYAASSS-----TYG---DHPGLPKVEDTIGKPLSPYAVTKYVNELYADVF 191
Query: 174 NGTNGLLTCCIRPSSIFGPGDR------LLVPSLVAAARAGKSKFIIGDGNNVYDFTYVA 227
+ G T +R ++FG ++P ++ G +I GDG DF Y+
Sbjct: 192 SRCYGFSTIGLRYFNVFGRRQDPNGAYAAVIPKWTSSMIQGDDVYINGDGETSRDFCYIE 251
Query: 228 NVAHAHICAERALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPA 287
N A++ A T A Q Y + + + +GL
Sbjct: 252 NTVQANLLA-------ATAGLDARNQVYNIAVGGRTSLNQLFFALRDGLAENGVSYHRE- 303
Query: 288 FVMMPIAHMVELTYRLLGPYGMKVPQLTPSR---VRLLSCSRTF-DCSKAKDLLGYMPIV 343
P R VR + D SKA LLGY P
Sbjct: 304 ------------------------PVYRDFREGDVR-----HSLADISKAAKLLGYAPKY 334
Query: 344 PLEEGIKRTVDSY 356
+ G+ + Y
Sbjct: 335 DVSAGVALAMPWY 347
|
| >3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus} Length = 311 | Back alignment and structure |
|---|
Score = 158 bits (401), Expect = 9e-45
Identities = 56/358 (15%), Positives = 108/358 (30%), Gaps = 72/358 (20%)
Query: 10 CVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSF 69
VTGG GF +++VE + + I S Y
Sbjct: 5 IAVTGGTGFLGQYVVESIKNDG-NTPIILTRSIGNKAIN--------------DYEYRVS 49
Query: 70 DLRHKAQVLQALQGAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYT 129
D ++ L + V H+AA N T+N+ DAC E + ++Y
Sbjct: 50 DYT-LEDLINQLNDVDAVVHLAA-TRGSQGKISEFHDNEILTQNLYDACYENNISNIVYA 107
Query: 130 SSPSVVFDGVHGIINGNEALP----YPPKHNDFYSATKAEGEALVIKANGTNGLLTCCIR 185
S+ + +LP P + Y +K E + + GL +R
Sbjct: 108 ST-----ISAYS---DETSLPWNEKELPLPDLMYGVSKLACEHIGNIYSRKKGLCIKNLR 159
Query: 186 PSSIFGPGDR--LLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICAERALASE 243
+ ++G ++ ++ A G+ + + +F Y + A + I AL E
Sbjct: 160 FAHLYGFNEKNNYMINRFFRQAFHGEQLTLHANSVAKREFLYAKDAAKSVI---YALKQE 216
Query: 244 VTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELTYRL 303
+ + + +++ +E + I G + +
Sbjct: 217 ------KVSGTFNIGSGDALTNYEVANTINNAFGNKDNLLVKNPN--------------- 255
Query: 304 LGPYGMKVPQLTPSRVRLLSCSRTF-DCSKAKDLLGYMPIVPLEEGIKRTVDSYSHLR 360
+ ++ D SKAK+LL + ++ L
Sbjct: 256 -----------ANEGIH-----SSYMDSSKAKELLDFSTDYNFATAVEEIHLLMRGLD 297
|
| >2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A* Length = 377 | Back alignment and structure |
|---|
Score = 157 bits (400), Expect = 7e-44
Identities = 70/394 (17%), Positives = 135/394 (34%), Gaps = 80/394 (20%)
Query: 10 CVVTGGRGFAARHLVEMLIRYDMFSVRIAD-LS----DSIALEPHEEQGILGEALRSGRA 64
+V GG GF +LV+ L+ + V + D L ++ P
Sbjct: 35 VMVVGGAGFVGSNLVKRLLELGVNQVHVVDNLLSAEKINVPDHP--------------AV 80
Query: 65 HYVSFDLRHKAQVLQALQGAEVVFHMAAPNS---SINNHKLHHSVNVEGTKNVIDACAEL 121
+ + A + + VFH+A + SI++ H N T + +
Sbjct: 81 RFSETSITDDALLASLQDEYDYVFHLATYHGNQSSIHDPLADHENNTLTTLKLYERLKHF 140
Query: 122 K-VKRLIYTSSPSVVFD--GVHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANGTNG 178
K +K+++Y+++ + + + ++ YS +K GE + + +
Sbjct: 141 KRLKKVVYSAAGCSIAEKTFDDAKATEETDIVSLHNNDSPYSMSKIFGEFYSVYYHKQHQ 200
Query: 179 LLTCCIRPSSIFGPGDRL---------------LVPSLVAAARAGKSKFIIGDGNNVYDF 223
L T R +++GPG+ L + P+ + A G + G DF
Sbjct: 201 LPTVRARFQNVYGPGEILGAGRWRGTPATVWRNVTPTFIYKALKGMPLPLENGGVATRDF 260
Query: 224 TYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRI 283
+V +VA+ I A+ G Y + + + + + I E G
Sbjct: 261 IFVEDVANGLIAC---------AADGTPGGVYNIASGKETSIADLATKINEITGNN---- 307
Query: 284 KIPAFVMMPIAHMVELTYRLLGPYGMKVPQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIV 343
EL P R S R KA+ LG+ V
Sbjct: 308 -------------TELDRL-------------PKRPWDNSGKRFGSPEKARRELGFSADV 341
Query: 344 PLEEGIKRTVDSY-SHLRAENQLKRVGPSKASVL 376
+++G+++T++ ++L Q+ R S +
Sbjct: 342 SIDDGLRKTIEWTKANLAVIEQIMRKHDSALATY 375
|
| >3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A* Length = 351 | Back alignment and structure |
|---|
Score = 153 bits (390), Expect = 1e-42
Identities = 83/379 (21%), Positives = 139/379 (36%), Gaps = 70/379 (18%)
Query: 4 EENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIAD-LSD--SIALEPHEEQGILGEALR 60
+ + ++TG GF +L+E L++ + V D S L+ E L +
Sbjct: 22 IFSPKTWLITGVAGFIGSNLLEKLLKLN-QVVIGLDNFSTGHQYNLD---EVKTLVSTEQ 77
Query: 61 SGRAHYVSFDLRHKAQVLQALQGAEVVFHMAAPNS---SINNHKLHHSVNVEGTKNVIDA 117
R ++ D+R Q ++G + V H AA S SI + ++ N+ G N++ A
Sbjct: 78 WSRFCFIEGDIRDLTTCEQVMKGVDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHA 137
Query: 118 CAELKVKRLIYTSSPSVVFDGVHGIINGNEALPYPPKHND----FYSATKAEGEALVIKA 173
+V+ Y +S S +G + ALP ++ Y+ TK E
Sbjct: 138 AKNAQVQSFTYAASSS-----TYG---DHPALPKVEENIGNPLSPYAVTKYVNEIYAQVY 189
Query: 174 NGTNGLLTCCIRPSSIFGPGDR------LLVPSLVAAARAGKSKFIIGDGNNVYDFTYVA 227
T G T +R ++FG ++P AA G +I GDG DF Y+
Sbjct: 190 ARTYGFKTIGLRYFNVFGRRQDPNGAYAAVIPKWTAAMLKGDDVYINGDGETSRDFCYID 249
Query: 228 NVAHAHICAERALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPA 287
NV +I + ++ + A Y V + E I + L K+
Sbjct: 250 NVIQMNI---LSALAK----DSAKDNIYNVAVGDRTTLNELSGYIYDELNLIHHIDKLS- 301
Query: 288 FVMMPIAHMVELTYRLLGPYGMKVPQLTPSR---VRLLSCSRTF-DCSKAKDLLGYMPIV 343
+ R VR + D +KA DLL Y P +
Sbjct: 302 ------------------------IKYREFRSGDVR-----HSQADVTKAIDLLKYRPNI 332
Query: 344 PLEEGIKRTVDSY-SHLRA 361
+ EG++ ++ Y L+
Sbjct: 333 KIREGLRLSMPWYVRFLKG 351
|
| >3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3- hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A {Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A* Length = 317 | Back alignment and structure |
|---|
Score = 144 bits (364), Expect = 3e-39
Identities = 59/357 (16%), Positives = 108/357 (30%), Gaps = 67/357 (18%)
Query: 12 VTGGRGFAARHLVEMLI-RYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFD 70
VTG G LV L +Y +V +D+ + +++ D
Sbjct: 4 VTGSSGQIGTELVPYLAEKYGKKNVIASDIV-----QRDTG-----------GIKFITLD 47
Query: 71 LRHKAQVLQALQ--GAEVVFHMAAPNS--SINNHKLHHSVNVEGTKNVIDACAELKVKRL 126
+ ++ ++ +A++ + +FH+A S + L + VN+ GT N+++A + +V+++
Sbjct: 48 VSNRDEIDRAVEKYSIDAIFHLAGILSAKGEKDPALAYKVNMNGTYNILEAAKQHRVEKV 107
Query: 127 IYTSSPSVVFDGVHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANGTNGLLTCCIRP 186
+ S+ VF P + TK E L GL +R
Sbjct: 108 VIPSTIG-VFGPETPKNKVPSITITRP--RTMFGVTKIAAELLGQYYYEKFGLDVRSLRY 164
Query: 187 SSIFGP------GDRLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICAERAL 240
I G + A + N Y+ + A +
Sbjct: 165 PGIISYKAEPTAGTTDYAVEIFYYAVKREKYKCYLAPNRALPMMYMPDALKALV-----D 219
Query: 241 ASEVTVAEKAAGQAYFVTNME-SIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVEL 299
E + Y VT + E S I E + K IA
Sbjct: 220 LYEADRDKLVLRNGYNVTAYTFTPS--ELYSKIKERIPEFEIEYKED--FRDKIAA---- 271
Query: 300 TYRLLGPYGMKVPQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSY 356
+ + D S+A + G+ L+ I +D
Sbjct: 272 -----------------------TWPESLDSSEASNEWGFSIEYDLDRTIDDMIDHI 305
|
| >3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} PDB: 3icp_A* 3aw9_A* Length = 312 | Back alignment and structure |
|---|
Score = 135 bits (343), Expect = 2e-36
Identities = 76/364 (20%), Positives = 131/364 (35%), Gaps = 77/364 (21%)
Query: 10 CVVTGGRGFAARHLVEMLIRYDMFSVRIAD-LSDSIALEPHEEQGILG--EALRSGRAHY 66
VVTGG GF HLV+ L+ + V + D LS G E + A
Sbjct: 3 IVVTGGAGFIGSHLVDKLVELG-YEVVVVDNLSS-------------GRREFVNPS-AEL 47
Query: 67 VSFDLRHKAQVLQALQGAEVVFHMAAPNS---SINNHKLHHSVNVEGTKNVIDACAELKV 123
DL+ + A +VVFH AA S +H + NV T NV++ + V
Sbjct: 48 HVRDLKDYS--WGAGIKGDVVFHFAANPEVRLSTTEPIVHFNENVVATFNVLEWARQTGV 105
Query: 124 KRLIYTSSPSVVFDGVHGIINGNEALP----YPPKHNDFYSATKAEGEALVIKANGTNGL 179
+ +++ SS + V+G + +P P K Y A KA GE + G+
Sbjct: 106 RTVVFASSST-----VYGD---ADVIPTPEEEPYKPISVYGAAKAAGEVMCATYARLFGV 157
Query: 180 LTCCIRPSSIFGP-GDRLLVPSLVAAARAGKSKFII-GDGNNVYDFTYVANVAHAHICAE 237
+R +++ GP ++ + R + + GDG + YV + A +
Sbjct: 158 RCLAVRYANVVGPRLRHGVIYDFIMKLRRNPNVLEVLGDGTQRKSYLYVRDAVEATL--- 214
Query: 238 RALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMP----- 292
A + A A V N+++++ + ++ E LG + +P+
Sbjct: 215 --AAWKKFEEMDAPFLALNVGNVDAVRVLDIAQIVAEVLGLRPEIRLVPSTPDGRGWPGD 272
Query: 293 IAHMVELTYRLLGPYGMKVPQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRT 352
+ +M +K L G+ P + E +K+T
Sbjct: 273 VKYMT------------------------------LAVTKLMKLTGWRPTMTSAEAVKKT 302
Query: 353 VDSY 356
+
Sbjct: 303 AEDL 306
|
| >3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} Length = 313 | Back alignment and structure |
|---|
Score = 134 bits (339), Expect = 8e-36
Identities = 70/360 (19%), Positives = 122/360 (33%), Gaps = 77/360 (21%)
Query: 10 CVVTGGRGFAARHLVEMLIR-YDMFSVRIAD-LSDSIALEPHEEQGILGEALRSGRAHYV 67
VVTGG GF H+V+ L + + + D LS +EE + A V
Sbjct: 4 IVVTGGAGFIGSHVVDKLSESNE---IVVIDNLSSG-----NEE------FVNEA-ARLV 48
Query: 68 SFDLRHKAQVLQALQGAEVVFHMAAPNS---SINNHKLHHSVNVEGTKNVIDACAELKVK 124
DL + L+GAE V+H+AA N + NV T +++A + V
Sbjct: 49 KADLAADD-IKDYLKGAEEVWHIAANPDVRIGAENPDEIYRNNVLATYRLLEAMRKAGVS 107
Query: 125 RLIYTSSPSVVFDGVHGIINGNEALP----YPPKHNDFYSATKAEGEALVIKANGTNGLL 180
R+++TS+ + V+G + +P YP Y A+K EAL+ T +
Sbjct: 108 RIVFTSTST-----VYGE---AKVIPTPEDYPTHPISLYGASKLACEALIESYCHTFDMQ 159
Query: 181 TCCIRPSSIFGP-GDRLLVPSLVAAARAGKSKFII-GDGNNVYDFTYVANVAHAHICAER 238
R +++ G ++ + + + I G+G + Y+++ A + R
Sbjct: 160 AWIYRFANVIGRRSTHGVIYDFIMKLKRNPEELEILGNGEQNKSYIYISDCVDAMLFGLR 219
Query: 239 ALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMP--IAHM 296
+ + + + IK ++ E LG + M
Sbjct: 220 G---------DERVNIFNIGSEDQIKVKRIAEIVCEELGLSPRFRFTGGDRGWKGDVPVM 270
Query: 297 VELTYRLLGPYGMKVPQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSY 356
+ K K LG+ P EE ++ V
Sbjct: 271 L------------------------------LSIEKLKR-LGWKPRYNSEEAVRMAVRDL 299
|
| >2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A* Length = 357 | Back alignment and structure |
|---|
Score = 133 bits (338), Expect = 2e-35
Identities = 57/360 (15%), Positives = 110/360 (30%), Gaps = 66/360 (18%)
Query: 11 VVTGGRGFAARHLVEMLIRYDMFSVRIAD-LSDSIA---LEPHEEQGILGEALRSGRAHY 66
+VTGG GF ++V+ L + + + D L D L + +
Sbjct: 50 IVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFVNLVDLNIADYMDKE-------- 101
Query: 67 VSFDLRHKAQVLQALQGAEVVFHMAAPNSSIN-NHKLHHSVNVEGTKNVIDACAELKVKR 125
D + + E +FH A +S+ + K N + +K ++ C E ++
Sbjct: 102 ---DFLIQIMAGEEFGDVEAIFHEGACSSTTEWDGKYMMDNNYQYSKELLHYCLEREIP- 157
Query: 126 LIYTSSPSVVFDGVHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANGTNGLLTCCIR 185
+Y SS + I E K + + +K + V + R
Sbjct: 158 FLYASSAATYGGRTSDFIESRE----YEKPLNVFGYSKFLFDEYVRQILPEANSQIVGFR 213
Query: 186 PSSIFGP-----GD-RLLVPSLVAAARAGKSKFII-GDGNNVYDFTYVANVAHAHICAER 238
+++GP G + L G+S + G N DF YV +VA ++
Sbjct: 214 YFNVYGPREGHKGSMASVAFHLNTQLNNGESPKLFEGSENFKRDFVYVGDVADVNLWF-- 271
Query: 239 ALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVE 298
E + + + F L + ++ P
Sbjct: 272 --------LENGVSGIFNLGTGRAESFQAVADATLAYHKKGQIE-----YIPFP------ 312
Query: 299 LTYRLLGPYGMKVPQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSYSH 358
+L G Y + + + D + + P + EG+ + +
Sbjct: 313 --DKLKGRY------------QAFTQA---DLTNLRAAGYDKPFKTVAEGVTEYMAWLNR 355
|
| >3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis} Length = 321 | Back alignment and structure |
|---|
Score = 132 bits (335), Expect = 4e-35
Identities = 63/368 (17%), Positives = 123/368 (33%), Gaps = 78/368 (21%)
Query: 1 MSGEENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIAD-LSDSIALEPHEEQGILGEAL 59
M + ++TGG GF HL L+ V + D L + P
Sbjct: 1 MQRNTLKHRILITGGAGFIGGHLARALVASG-EEVTVLDDLRVPPMIPPE---------- 49
Query: 60 RSGRAHYVSFDLRHKAQVLQALQGAEVVFHMAAPNS---SINNHKLHHSVNVEGTKNVID 116
G ++ + + L +V+H+A+ S S L + NV+ ++++
Sbjct: 50 --GTGKFLEKPVLEL--EERDLSDVRLVYHLASHKSVPRSFKQ-PLDYLDNVDSGRHLLA 104
Query: 117 ACAELKVKRLIYTSSPSVVFDGVHGIINGNEALPYPPKHND----FYSATKAEGEALVIK 172
C + V +++ S+ V+G + LP P Y+A+K E +
Sbjct: 105 LCTSVGVPKVVVGSTCE-----VYG---QADTLPTPEDSPLSPRSPYAASKVGLEMVAGA 156
Query: 173 ANGTNGLLT-CCIRPSSIFGPG--DRLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANV 229
+ +R +++GPG LVP L A + GDG DFTY+ +V
Sbjct: 157 HQRASVAPEVGIVRFFNVYGPGERPDALVPRLCANLLTRNELPVEGDGEQRRDFTYITDV 216
Query: 230 AHAHICAERALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFV 289
+ A + + +S+ + + ++ + +
Sbjct: 217 VDKLVAL----------ANRPLPSVVNFGSGQSLSVNDVIRIL-QATSPAAEVARKQ--- 262
Query: 290 MMPIAHMVELTYRLLGPYGMKVPQLTPSRVRLLSCSRTFDCSKAKDLLGYMPI-VPLEEG 348
P+ P+ + D + +G + +EEG
Sbjct: 263 ----------------------PR--PNEITEFRA----DTALQTRQIGERSGGIGIEEG 294
Query: 349 IKRTVDSY 356
I+ T++ +
Sbjct: 295 IRLTLEWW 302
|
| >2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica} Length = 333 | Back alignment and structure |
|---|
Score = 131 bits (333), Expect = 9e-35
Identities = 63/377 (16%), Positives = 107/377 (28%), Gaps = 94/377 (24%)
Query: 12 VTGGRGFAARHLVEMLIRYDMFSVRIAD-LSD--SIALEPHEEQGILGEALRSGRAHYVS 68
+TG G H+ E+L+ V D + L+ H +V
Sbjct: 26 ITGICGQIGSHIAELLLERG-DKVVGIDNFATGRREHLKDHP------------NLTFVE 72
Query: 69 FDLRHKAQVLQALQG--AEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRL 126
+ A V Q + + V H AA ++ N G NV+ A + V R
Sbjct: 73 GSIADHALVNQLIGDLQPDAVVHTAASYKDPDDWYNDTLTNCVGGSNVVQAAKKNNVGRF 132
Query: 127 IYTSSPSVVFDGVHGIINGNEALPY----PPKH-NDFYSATKAEGEALVIKANGTNGLLT 181
+Y + GV P P N Y+ +K+ E + +GL
Sbjct: 133 VYFQTALCY--GVKP-----IQQPVRLDHPRNPANSSYAISKSANEDYL----EYSGLDF 181
Query: 182 CCIRPSSIFGPGDRL-LVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICAERAL 240
R +++ GP + +P GK F+ DF +V ++A A + A
Sbjct: 182 VTFRLANVVGPRNVSGPLPIFFQRLSEGKKCFV---TKARRDFVFVKDLARATVRA---- 234
Query: 241 ASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELT 300
+ AY ++ + E ++E +
Sbjct: 235 ------VDGVGHGAYHFSSGTDVAIKELYDAVVEAMALPSYPEPEIR------------- 275
Query: 301 YRLLGPYGMKVPQLTPSR---VRLLSCSRTF-DCSKAKDLLGYMPIVPLEEGIKRTVD-- 354
D S+ G + PL+E + V
Sbjct: 276 ---------------ELGPDDAP-----SILLDPSRTIQDFGKIEFTPLKETVAAAVAYF 315
Query: 355 -------SYSHLRAENQ 364
Y+HL+
Sbjct: 316 REYGVSGGYTHLKINEN 332
|
| >3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori} Length = 362 | Back alignment and structure |
|---|
Score = 132 bits (334), Expect = 1e-34
Identities = 67/361 (18%), Positives = 123/361 (34%), Gaps = 68/361 (18%)
Query: 11 VVTGGRGFAARHLVEMLI-RYDMFSVRIAD-LSDSIALEPHEEQGILG-EALRSGRAHYV 67
++TGG GF +L + V + D + + + + L + +
Sbjct: 14 LITGGAGFVGSNLAFHFQENHPKAKVVVLDKFRSNTLFSNNRPSSLGHFKNLIGFKGEVI 73
Query: 68 SFDLRHKAQVLQAL-QGAEVVFHMAAPNS-SINNHKLHHSVNVEGTKNVIDACAELKVKR 125
+ D+ + + + + +FH AA + ++ N +L N + N+++ K K
Sbjct: 74 AADINNPLDLRRLEKLHFDYLFHQAAVSDTTMLNQELVMKTNYQAFLNLLEIARSKKAK- 132
Query: 126 LIYTSSPSVVFDGVHGIINGNEALPYPPKHND----FYSATKAEGEALVIKANGTNGLLT 181
+IY SS V GN P N+ Y +K + V+ +N +
Sbjct: 133 VIYASSAGVY---------GNTKAPNVVGKNESPENVYGFSKLCMDEFVLSH--SNDNVQ 181
Query: 182 CCIRPSSIFGPGDRL------LVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHIC 235
+R +++GP + +V L A A K + G + DF Y+ +V A++
Sbjct: 182 VGLRYFNVYGPREFYKEKTASMVLQLALGAMAFKEVKLFEFGEQLRDFVYIEDVIQANVK 241
Query: 236 AERALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAH 295
A + Y V ++ + E VS++ E LG ++ P A
Sbjct: 242 A----------MKAQKSGVYNVGYSQARSYNEIVSILKEHLGD-----FKVTYIKNPYAF 286
Query: 296 MVELTYRLLGPYGMKVPQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDS 355
+ T L Y P+ LE GIK +
Sbjct: 287 FQKHTQ--------------------------AHIEPTILDLDYTPLYDLESGIKDYLPH 320
Query: 356 Y 356
Sbjct: 321 I 321
|
| >1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2 Length = 310 | Back alignment and structure |
|---|
Score = 130 bits (328), Expect = 3e-34
Identities = 59/360 (16%), Positives = 109/360 (30%), Gaps = 66/360 (18%)
Query: 11 VVTGGRGFAARHLVEMLIRYDMFSVRIAD-LSDSIALEPHEEQGILGEALRSGRAHYVSF 69
+VTGG GF ++V+ L + + + D L D + I A Y+
Sbjct: 3 IVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFVNLVDLNI---------ADYMDK 53
Query: 70 -DLRHKAQVLQALQGAEVVFHMAAPNS---SINNHKLHHSVNVEGTKNVIDACAELKVKR 125
D + + E +FH A +S N + +K ++ C E ++
Sbjct: 54 EDFLIQIMAGEEFGDVEAIFHEGACSSTTEWDGK--YMMDNNYQYSKELLHYCLEREIPF 111
Query: 126 LIYTSSPSVVFDGVHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANGTNGLLTCCIR 185
+Y SS + I E K + Y +K + V + R
Sbjct: 112 -LYASSAATYGGRTSDFIESRE----YEKPLNVYGYSKFLFDEYVRQILPEANSQIVGFR 166
Query: 186 PSSIFGP-----GD-RLLVPSLVAAARAGKSKFII-GDGNNVYDFTYVANVAHAHICAER 238
+++GP G + L G+S + G N DF YV +VA ++
Sbjct: 167 YFNVYGPREGHKGSMASVAFHLNTQLNNGESPKLFEGSENFKRDFVYVGDVADVNLWF-- 224
Query: 239 ALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVE 298
E + + + F L + ++ P
Sbjct: 225 --------LENGVSGIFNLGTGRAESFQAVADATLAYHKKGQIE-----YIPFP------ 265
Query: 299 LTYRLLGPYGMKVPQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSYSH 358
+L G Y + + + D + + P + EG+ + +
Sbjct: 266 --DKLKGRY------------QAFTQA---DLTNLRAAGYDKPFKTVAEGVTEYMAWLNR 308
|
| >3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens} Length = 267 | Back alignment and structure |
|---|
Score = 128 bits (324), Expect = 3e-34
Identities = 50/280 (17%), Positives = 76/280 (27%), Gaps = 56/280 (20%)
Query: 11 VVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFD 70
+VTG G + L VR++D+ D A E HEE V+ D
Sbjct: 6 LVTGAAGGVGSAIRPHLGTLA-HEVRLSDIVDLGAAEAHEE--------------IVACD 50
Query: 71 LRHKAQVLQALQGAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTS 130
L V ++ + + H+ S N+ G N+ +A L R+++ S
Sbjct: 51 LADAQAVHDLVKDCDGIIHLGG-VSVERPWNDILQANIIGAYNLYEAARNLGKPRIVFAS 109
Query: 131 SPSVVFDGVHGIINGNEALPYPPKHND------FYSATKAEGEALVIKANGTNGLLTCCI 184
S + G Y +K GE L + T I
Sbjct: 110 SNHTI---------GYYPRTTRIDTEVPRRPDSLYGLSKCFGEDLASLYYHKFDIETLNI 160
Query: 185 RPSSIFGP-----------GDRLLVPSLVAAARAGKSKFII--GDGNNVYDFTYVANVAH 231
R S F + + A A K + G N + A
Sbjct: 161 RIGSCFPKPKDARMMATWLSVDDFMRLMKRAFVAPKLGCTVVYGASANTESWWDNDKSAF 220
Query: 232 --------AHICAERALASEVTVAEKAAGQAY----FVTN 259
+ I E + Y FV
Sbjct: 221 LGWVPQDSSEIWREEIEQQAGEIDPDDPAVIYQGGKFVAA 260
|
| >3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A* Length = 267 | Back alignment and structure |
|---|
Score = 125 bits (316), Expect = 4e-33
Identities = 48/229 (20%), Positives = 75/229 (32%), Gaps = 38/229 (16%)
Query: 11 VVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFD 70
+VTG G R + E L +R+ADLS P+EE V D
Sbjct: 7 LVTGAAGQLGRVMRERLAP-MAEILRLADLSPLDPAGPNEE--------------CVQCD 51
Query: 71 LRHKAQVLQALQGAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTS 130
L V + G + + H+ S + N+ G N+ +A R+++ S
Sbjct: 52 LADANAVNAMVAGCDGIVHLGG-ISVEKPFEQILQGNIIGLYNLYEAARAHGQPRIVFAS 110
Query: 131 SPSVVFDGVHGIINGNEALP--YPPKHNDFYSATKAEGEALVIKANGTNGLLTCCIRPSS 188
S + G E L P + + Y +K GE L G T +R S
Sbjct: 111 S-----NHTIGYYPQTERLGPDVPARPDGLYGVSKCFGENLARMYFDKFGQETALVRIGS 165
Query: 189 IFG-PGDRL-------------LVPSLVAAARAGKSKFIIGDGNNVYDF 223
P + L+ ++ A G + G N +
Sbjct: 166 CTPEPNNYRMLSTWFSHDDFVSLIEAVFRAPVLGCP-VVWGASANDAGW 213
|
| >2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris} Length = 312 | Back alignment and structure |
|---|
Score = 114 bits (287), Expect = 1e-28
Identities = 53/361 (14%), Positives = 98/361 (27%), Gaps = 70/361 (19%)
Query: 12 VTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDL 71
+ G G L + L + IA + + + +
Sbjct: 7 IIGACGQIGTELTQKLRKLYGTENVIASDIRKLNTDVVNS------------GPFEVVNA 54
Query: 72 RHKAQV--LQALQGAEVVFHMAAPNS--SINNHKLHHSVNVEGTKNVIDACAELKVKRLI 127
Q+ L + ++ MAA S + N +N+ +V++ K+K++
Sbjct: 55 LDFNQIEHLVEVHKITDIYLMAALLSATAEKNPAFAWDLNMNSLFHVLNLAKAKKIKKIF 114
Query: 128 YTSSPSVVFDGVHGIINGNEALPYPPKHND-----FYSATKAEGEALVIKANGTNGLLTC 182
+ SS +V G P++ Y +K GE + G+
Sbjct: 115 WPSSIAVF--G------PTTPKENTPQYTIMEPSTVYGISKQAGERWCEYYHNIYGVDVR 166
Query: 183 CIRPSSIFGPGDRLL------VPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICA 236
IR + + A A K Y+ + A I
Sbjct: 167 SIRYPGLISWSTPPGGGTTDYAVDIFYKAIADKKYECFLSSETKMPMMYMDDAIDATI-- 224
Query: 237 ERALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHM 296
+ V + +Y + M S E + I + IP F +
Sbjct: 225 ---NIMKAPVEKIKIHSSYNLAAM-SFTPTEIANEI---------KKHIPEFTIT----- 266
Query: 297 VELTYRLLGPYGMKVPQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSY 356
Y Q + D S+A++ + LE K ++
Sbjct: 267 ----------YEPDFRQKIADSWP-----ASIDDSQAREDWDWKHTFDLESMTKDMIEHL 311
Query: 357 S 357
S
Sbjct: 312 S 312
|
| >2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A* Length = 379 | Back alignment and structure |
|---|
Score = 112 bits (281), Expect = 3e-27
Identities = 83/406 (20%), Positives = 134/406 (33%), Gaps = 94/406 (23%)
Query: 11 VVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFD 70
+TG GF A H+ L + V +D + + + D
Sbjct: 33 SITGAGGFIASHIARRLKH-EGHYVIASDWKKNEHMTEDM-----------FCDEFHLVD 80
Query: 71 LRHKAQVLQALQGAEVVFHMAAPNSSI----NNHKLHHSVNVEGTKNVIDACAELKVKRL 126
LR L+ +G + VF++AA + +NH + N + N+I+A +KR
Sbjct: 81 LRVMENCLKVTEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRF 140
Query: 127 IYTSS------PSVVFDGVHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANGTNGLL 180
Y SS + + + +P + D + K E L N G+
Sbjct: 141 FYASSACIYPEFKQLETTNVSLKESDA---WPAEPQDAFGLEKLATEELCKHYNKDFGIE 197
Query: 181 TCCIRPSSIFGP-----GDRLLVPS--LVAAARAGKSKFIIGDGNNVYDFTYVANVAHAH 233
R +I+GP G R P+ A + + GDG FT++
Sbjct: 198 CRIGRFHNIYGPFGTWKGGREKAPAAFCRKAQTSTDRFEMWGDGLQTRSFTFIDECVEGV 257
Query: 234 ICAERALASEVTVAEKAAGQAYFVTN-----MESIKFWEFVSLILEGLGYQRPRIKIPAF 288
+ R S+ N M S+ E ++L + P IP
Sbjct: 258 L---RLTKSDFRE----------PVNIGSDEMVSMN--EMAEMVLSFEEKKLPIHHIP-- 300
Query: 289 VMMPIAHMVELTYRLLGPYGMKVPQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEG 348
GP G V R D + K+ LG+ P + L+EG
Sbjct: 301 ----------------GPEG--VRG------------RNSDNNLIKEKLGWAPNMRLKEG 330
Query: 349 IKRTVDSYSHLRAENQLK----------RVGPSKASVLLGSGRVAD 384
++ T + + K +V ++A V LGS R AD
Sbjct: 331 LRITYFWIKEQIEKEKAKGSDVSLYGSSKVVGTQAPVQLGSLRAAD 376
|
| >2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A* Length = 311 | Back alignment and structure |
|---|
Score = 106 bits (268), Expect = 4e-26
Identities = 86/365 (23%), Positives = 132/365 (36%), Gaps = 82/365 (22%)
Query: 12 VTGGRGFAARHLVEMLIRYDMFSVRIAD-LSDSIALEPHEEQGILGEALRSGRAHYVSFD 70
VTGG GF H+VE L+ V + D L+ G E + G + D
Sbjct: 5 VTGGAGFIGSHIVEDLLA-RGLEVAVLDNLA----------TGKR-ENVPKG-VPFFRVD 51
Query: 71 LRHKAQVLQALQG--AEVVFHMAAPNS---SINNHKLHHSVNVEGTKNVIDACAELKVKR 125
LR K V +A + V H AA S S+ + L VN+ G N+++AC + V++
Sbjct: 52 LRDKEGVERAFREFRPTHVSHQAAQASVKVSVEDPVLDFEVNLLGGLNLLEACRQYGVEK 111
Query: 126 LIYTSSPSVVFDGVHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANGTNGLLTCCIR 185
L++ S+ ++ V E P PK Y+A+KA E + + GL +R
Sbjct: 112 LVFASTGGAIYGEVPEGERAEETWPPRPK--SPYAASKAAFEHYLSVYGQSYGLKWVSLR 169
Query: 186 PSSIFGPGDRL-----LVPSLVAAARAGKSKFI-----IGDGNNVYDFTYVANVAHAHIC 235
+++GP +V G + GD V D+ YV +VA AH
Sbjct: 170 YGNVYGPRQDPHGEAGVVAIFAERVLKGLPVTLYARKTPGDEGCVRDYVYVGDVAEAHAL 229
Query: 236 AERALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAH 295
A +L V G+ + + + E + + E G
Sbjct: 230 ALFSLEGIYNV---GTGEGH------TTR--EVLMAVAEAAGKAPE-------------- 264
Query: 296 MVELTYRLLGPYGMKVPQLTPSR----VRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKR 351
Q P R R + K G+ P V +EGI+
Sbjct: 265 ----------------VQPAPPRPGDLERSVL-----SPLKLMA-HGWRPKVGFQEGIRL 302
Query: 352 TVDSY 356
TVD +
Sbjct: 303 TVDHF 307
|
| >3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A Length = 369 | Back alignment and structure |
|---|
Score = 107 bits (269), Expect = 7e-26
Identities = 47/329 (14%), Positives = 91/329 (27%), Gaps = 62/329 (18%)
Query: 10 CVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSF 69
V+TG +GF ++L L +
Sbjct: 3 IVITGAKGFVGKNLKADLTSTTDHHIFEVHRQTKEE------------------------ 38
Query: 70 DLRHKAQVLQALQGAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYT 129
++ AL A+ + H+A N ++ + NV +V+D K I
Sbjct: 39 ------ELESALLKADFIVHLAGVNRPEHDKEFSL-GNVSYLDHVLDILTRNTKKPAILL 91
Query: 130 SSPSVVFDGVHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANGTNGLLTCCIRPSSI 189
SS S+ + Y +K +GE L+ + G R ++
Sbjct: 92 SS-SIQATQDN-----------------PYGESKLQGEQLLREYAEEYGNTVYIYRWPNL 133
Query: 190 FGPGDR----LLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICAERALASEVT 245
FG + ++ + + + D N YV ++ A +
Sbjct: 134 FGKWCKPNYNSVIATFCYKIARNEE-IQVNDRNVELTLNYVDDIVAEIKRA-------IE 185
Query: 246 VAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIA-HMVELTYRLL 304
V N+ + E V L+ + + R + + L+Y
Sbjct: 186 GTPTIENGVPTVPNVFKVTLGEIVDLLYKFKQSRLDRTLPKLDNLFEKDLYSTYLSYLPS 245
Query: 305 GPYGMKVPQLTPSRVRLLSCSRTFDCSKA 333
+ + R +T D +
Sbjct: 246 TDFSYPLLMNVDDRGSFTEFIKTPDRGQV 274
|
| >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} Length = 227 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 2e-24
Identities = 37/262 (14%), Positives = 74/262 (28%), Gaps = 54/262 (20%)
Query: 4 EENERLCVVTGGRGFAARHLVEMLIR--YDMFSVRIADLSDSIALEPHEEQGILGEALRS 61
E+ +++ + G GF L+ + ++ V +E
Sbjct: 2 EKVKKIVL-IGASGFVGSALLNEALNRGFE---VTAVVRHPEKIKIENE----------- 46
Query: 62 GRAHYVSFDLRHKAQVLQALQGAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAEL 121
D+ +V + +GA+ V P N+ + ++ +ID +
Sbjct: 47 -HLKVKKADVSSLDEVCEVCKGADAVISAFNPGW---NNPDIYDETIKVYLTIIDGVKKA 102
Query: 122 KVKRLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANGTNGLLT 181
V R + G I G + + KA GE + +
Sbjct: 103 GVNRFLMVGGA-----GSLFIAPGLRLMDSGEVPENILPGVKALGEFYLNFLMKEKEIDW 157
Query: 182 CCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYD-----FTYVANVAHAHI-C 235
P++ PG R ++ +G + + D V + A A I
Sbjct: 158 VFFSPAADMRPGVRT-------------GRYRLGKDDMIVDIVGNSHISVEDYAAAMIDE 204
Query: 236 AERALASEVTVAEKAAGQAYFV 257
E K + + +
Sbjct: 205 LEH---------PKHHQERFTI 217
|
| >2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A* Length = 364 | Back alignment and structure |
|---|
Score = 98.3 bits (244), Expect = 1e-22
Identities = 57/382 (14%), Positives = 113/382 (29%), Gaps = 52/382 (13%)
Query: 12 VTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDL 71
+ G G L E+L D + + +YV D+
Sbjct: 6 IVGVTGIIGNSLAEILPLADTPGGP----WKVYGVARRTRPAWHEDN----PINYVQCDI 57
Query: 72 RHKAQVLQALQGAEVVFHMAAPNSSIN-NHKLHHSVNVEGTKNVIDACAE--LKVKRLIY 128
L V H+ + + + N + +NV+DA +K +
Sbjct: 58 SDPDDSQAKLSPLTDVTHVFYVTWANRSTEQENCEANSKMFRNVLDAVIPNCPNLKHISL 117
Query: 129 TSSPSVVFDGVHGIING-------NEALPYPPKHNDFYSATKAEGEALVIKANGTNGLLT 181
+ E LP N +Y + ++ + GL
Sbjct: 118 QTGRKHYMGPFESYGKIESHDPPYTEDLPRLKYMNFYYDLE----DIMLEEVEKKEGLTW 173
Query: 182 CCIRPSSIFGPGDR-----LLVPSLVAAARAGKSKFIIGDG-----NNVYDFTYVANVAH 231
RP +IFG + + AA + K + G + D + +A
Sbjct: 174 SVHRPGNIFGFSPYSMMNLVGTLCVYAAICKHEGKVLRFTGCKAAWDGYSDCSDADLIAE 233
Query: 232 AHICAERALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMM 291
HI A V A +A+ V+N + K+ F ++ E G + + + +
Sbjct: 234 HHIWA--------AVDPYAKNEAFNVSNGDVFKWKHFWKVLAEQFGVECGEYEEGVDLKL 285
Query: 292 --PIAHMVELTYRLLGPYGMKVPQLTP------SRVRLLSCSRTFDCSKAKDLLGYMPIV 343
+ + ++ G+ +L V L + +K+K+ G++
Sbjct: 286 QDLMKGKEPVWEEIVRENGLTPTKLKDVGIWWFGDVILGNECFLDSMNKSKE-HGFLGFR 344
Query: 344 PLEEGIKRTVDSYSHLRAENQL 365
+ +D +A +
Sbjct: 345 NSKNAFISWID---KAKAYKIV 363
|
| >3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei} Length = 372 | Back alignment and structure |
|---|
Score = 97.2 bits (242), Expect = 3e-22
Identities = 59/386 (15%), Positives = 121/386 (31%), Gaps = 78/386 (20%)
Query: 10 CVVTGGRGFAARHLVEMLIRYDMFSVRIADLS-DSIA-LEPHEEQGILGEALRSGRAHYV 67
++ G GF HL + ++ + V D+ D + L HE R H+
Sbjct: 27 VLILGVNGFIGHHLSKRILETTDWEVFGMDMQTDRLGDLVKHE------------RMHFF 74
Query: 68 SFDLRHKAQVLQALQG-AEVVFHMAAPNS--SINNHKLH-HSVNVEGTKNVIDACAELKV 123
D+ + ++ +V+ + A + + L ++ E ++ + +
Sbjct: 75 EGDITINKEWVEYHVKKCDVILPLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYG- 133
Query: 124 KRLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDF--------------YSATKAEGEAL 169
K L++ S+ S V+ G+ D Y+ +K + +
Sbjct: 134 KHLVFPST-SEVY-GMC---------ADEQFDPDASALTYGPINKPRWIYACSKQLMDRV 182
Query: 170 VIKANGTNGLLTCCIRPSSIFGP----------GDRLLVPSLVAAARAGKSKFIIGDGNN 219
I G GL RP + GP G +V + G++ ++ G+
Sbjct: 183 -IWGYGMEGLNFTLFRPFNWIGPGLDSIYTPKEGSSRVVTQFLGHIVRGENISLVDGGSQ 241
Query: 220 VYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMES-IKFWEFVSLILEGLGY 278
FTYV + A + + + + A G+ Y + N + E + +LE
Sbjct: 242 KRAFTYVDDGISALM---KIIENS---NGVATGKIYNIGNPNNNFSVRELANKMLELAAE 295
Query: 279 QRPRIKIPAFVMMPIAHMVELTYRLLGPYGMKVPQLTPSRVRLLSCSRTFDCSKAKDLLG 338
V + Y R LG
Sbjct: 296 FPEYADSAKRV--KLVETTSGAYYGN-------GYQDVQN-------RVPKIENTMQELG 339
Query: 339 YMPIVPLEEGIKRTVDSYSHLRAENQ 364
+ P ++ +++ ++Y A+ +
Sbjct: 340 WAPQFTFDDALRQIFEAYRGHVADAR 365
|
| >2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A Length = 345 | Back alignment and structure |
|---|
Score = 94.8 bits (236), Expect = 1e-21
Identities = 67/377 (17%), Positives = 119/377 (31%), Gaps = 75/377 (19%)
Query: 10 CVVTGGRGFAARHLVEMLIRYDMFSVRIAD-LSDSIA-LEPHEEQGILGEALRSGRAHYV 67
++ G GF HL E L+R D + V D SD+I+ H H+V
Sbjct: 3 VLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHP------------HFHFV 50
Query: 68 SFDLRHKAQVLQALQG-AEVVFHMAAPNSSINNHKLHHSV-----NVEGTKNVIDACAEL 121
D+ ++ ++ +VV + A + I + + + E +I C +
Sbjct: 51 EGDISIHSEWIEYHVKKCDVVLPLVAIATPI--EYTRNPLRVFELDFEENLRIIRYCVKY 108
Query: 122 KVKRLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDF-----------YSATKAEGEALV 170
+ KR+I+ S+ V + H++ YS +K + ++
Sbjct: 109 R-KRIIFPSTSEVYGM--------CSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVI 159
Query: 171 IKANGTNGLLTCCIRPSSIFGP----------GDRLLVPSLVAAARAGKSKFIIGDGNNV 220
GL RP + GP G + L+ G +I G
Sbjct: 160 WAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQK 219
Query: 221 YDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMES-IKFWEFVSLILEGLGYQ 279
FT + + A R + + + G+ + N E+ E ++L
Sbjct: 220 RCFTDIRDGIEALY---RIIENA---GNRCDGEIINIGNPENEASIEELGEMLLASFEKH 273
Query: 280 RPRIKIPAFVMMPIAHMVELTYRLLGPYGMKVPQLTPSRVRLLSCSRTFDCSKAKDLLGY 339
R P F + YG R A L +
Sbjct: 274 PLRHHFPPFAGFRVVESSSY-------YGK--GYQDVEH-------RKPSIRNAHRCLDW 317
Query: 340 MPIVPLEEGIKRTVDSY 356
P + ++E I T+D +
Sbjct: 318 EPKIDMQETIDETLDFF 334
|
| >2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A* Length = 330 | Back alignment and structure |
|---|
Score = 85.7 bits (213), Expect = 1e-18
Identities = 67/373 (17%), Positives = 121/373 (32%), Gaps = 91/373 (24%)
Query: 12 VTGGRGFAARHLVEMLIR--YDMFSVRIAD-LSDSIALEPHEEQGILGEAL-RSGRAHYV 67
+TGG G +L+E + ++ + + D + E L +
Sbjct: 25 ITGGAGCLGSNLIEHWLPQGHE---ILVIDNFATG-----KRE------VLPPVAGLSVI 70
Query: 68 SFDLRHKAQVLQALQG--AEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKR 125
+ + +A V H AA ++ + NV+G+ NV A ++ VKR
Sbjct: 71 EGSVTDAGLLERAFDSFKPTHVVHSAAAYKDPDDWAEDAATNVQGSINVAKAASKAGVKR 130
Query: 126 LIYTSSPSVVFDGVHGIINGNEALP----YPPKHNDFYSATKAEGEALVIKANGTNGLLT 181
L+ + +G +P P Y +K GEA + + +
Sbjct: 131 LLNFQTALC-----YGR---PATVPIPIDSPTAPFTSYGISKTAGEA-FLMMSD---VPV 178
Query: 182 CCIRPSSIFGP-GDRLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICAERAL 240
+R +++ GP +P+ +AG+ F + V DF +++ +L
Sbjct: 179 VSLRLANVTGPRLAIGPIPTFYKRLKAGQKCFC---SDTVRDFLDMSDFLAIAD---LSL 232
Query: 241 ASEVTVAEKAAGQAYFV-TNME-SIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVE 298
E + V T SIK E ++L+ +G +A V
Sbjct: 233 Q------EGRPTGVFNVSTGEGHSIK--EVFDVVLDYVGA-------------TLAEPVP 271
Query: 299 LTYRLLGPYGMKVPQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTV----- 353
+ V L D SK + G+ V ++ I +
Sbjct: 272 VVAPGAD---------DVPSVVL-------DPSKTETEFGWKAKVDFKDTITGQLAWYDK 315
Query: 354 ----DSYSHLRAE 362
D +SHL A
Sbjct: 316 YGVTDIFSHLSAP 328
|
| >2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa} Length = 322 | Back alignment and structure |
|---|
Score = 83.4 bits (207), Expect = 6e-18
Identities = 70/377 (18%), Positives = 119/377 (31%), Gaps = 89/377 (23%)
Query: 7 ERLCVVTGGRGFAARHLVEMLIR--YD-MFSVRIADLSDSIALEPHEEQGILGEALRSGR 63
R+CV TGG GF +++ L+ Y ++R AD + E L
Sbjct: 2 GRVCV-TGGTGFLGSWIIKSLLENGYSVNTTIR-ADPERKRDVSFLTNLPGASEKL---- 55
Query: 64 AHYVSFDLRHKAQVLQALQGAEVVFHMAAPNSSINNHKLHHSVN----------VEGTKN 113
H+ + DL + A++G +FH A+P + +V+ V+G
Sbjct: 56 -HFFNADLSNPDSFAAAIEGCVGIFHTASP--------IDFAVSEPEEIVTKRTVDGALG 106
Query: 114 VIDACAELK-VKRLIYTSSPSVVFDGVHGIINGNEA----LPYPPKHND-----FYSATK 163
++ AC K VKR IYTSS S V +E+ + S T
Sbjct: 107 ILKACVNSKTVKRFIYTSSGSAVSFNGKDKDVLDESDWSDVDLLRSVKPFGWNYAVSKTL 166
Query: 164 AEGEALVIKANGTNGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDF 223
AE L + NG+ + I G + P L + ++G +
Sbjct: 167 AEKAVL--EFGEQNGIDVVTLILPFIVGR---FVCPKLPDSIEKALV-LVLGKKEQIGVT 220
Query: 224 TY----VANVAHAHICAERALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQ 279
+ V +VA AHI E G+ Y + + E L+
Sbjct: 221 RFHMVHVDDVARAHI-----YLLEN---SVPGGR-YNCSP-FIVPIEEMSQLL------- 263
Query: 280 RPRIKIPAFVMMPIAHMVELTYRLLGPYGMKVPQLTPSRVRLLSCSRTFDCSKAKDLLGY 339
K P + ++ + + + + K D G+
Sbjct: 264 --SAKYPEY---------------------QILTVDELKEIKGARLPDLNTKKLVD-AGF 299
Query: 340 MPIVPLEEGIKRTVDSY 356
+E+ +
Sbjct: 300 DFKYTIEDMFDDAIQCC 316
|
| >2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A* Length = 337 | Back alignment and structure |
|---|
Score = 82.7 bits (205), Expect = 2e-17
Identities = 78/386 (20%), Positives = 134/386 (34%), Gaps = 97/386 (25%)
Query: 1 MSGEENERLCVVTGGRGFAARHLVEMLIR--YDMFSVR--IADLSDSIALEPHEEQGILG 56
M + +E +CV TG GF LV L+ Y +VR + D ++ ++ + L
Sbjct: 1 MGSQ-SETVCV-TGASGFIGSWLVMRLLERGY---TVRATVRDPTNVKKVKHLLD---LP 52
Query: 57 EALRSGRAHYVSFDLRHKAQVLQALQGAEVVFHMAAPNSSINNHKLHHSVN--------- 107
+A DL + +A++G VFH+A P +
Sbjct: 53 KA--ETHLTLWKADLADEGSFDEAIKGCTGVFHVATP--------MDFESKDPENEVIKP 102
Query: 108 -VEGTKNVIDACAELK-VKRLIYTSSPSVVFDGVHGIINGNEA----LPYPPKHND---- 157
+EG ++ +CA K V+RL++TSS V H + +E+ + +
Sbjct: 103 TIEGMLGIMKSCAAAKTVRRLVFTSSAGTVNIQEHQLPVYDESCWSDMEFCRAKKMTAWM 162
Query: 158 -FYSATKAEGEAL-VIKANGTNGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIG 215
F S T AE A K N + +T P+ + GP ++ S+ + S I G
Sbjct: 163 YFVSKTLAEQAAWKYAKENNID-FITII--PTLVVGP---FIMSSMPPSLITALS-PITG 215
Query: 216 D---GNNVYDFTYV--ANVAHAHICAERALASEVTVAEKAAGQAYFVTNMESIKFWEFVS 270
+ + + +V ++ +AHI E KA G+ Y ++ +
Sbjct: 216 NEAHYSIIRQGQFVHLDDLCNAHI-----YLFEN---PKAEGR-YICSS-HDCIILDLAK 265
Query: 271 LILEGLGYQRPRIKIPAFVMMPIAHMVELTYRLLGPYGMKVPQLTPSRVRLLSCSRTFDC 330
++ E + P IP +K
Sbjct: 266 MLRE----KYPEYNIPTEFKG-------------VDENLK---------------SVCFS 293
Query: 331 SKAKDLLGYMPIVPLEEGIKRTVDSY 356
SK LG+ LE+ VD+
Sbjct: 294 SKKLTDLGFEFKYSLEDMFTGAVDTC 319
|
| >1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, BIO protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A* Length = 404 | Back alignment and structure |
|---|
Score = 81.7 bits (202), Expect = 5e-17
Identities = 59/400 (14%), Positives = 116/400 (29%), Gaps = 96/400 (24%)
Query: 12 VTGGRGF----AARHLVEM---LIRYDMFSVRIAD----LSDSIALEPHEEQGILGEALR 60
V GG G+ A HL + + D R+ D L + ++ +AL
Sbjct: 16 VIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALT 75
Query: 61 SGRAHYVSFDLRHKAQVLQALQG--AEVVFHMAAPNS---SINN--HKLH-HSVNVEGTK 112
D+ + ++ + + V H S S+ + ++ NV GT
Sbjct: 76 GKSIELYVGDICDFEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTL 135
Query: 113 NVIDACAELKVKRLIYTSS-------PSVVFDGVHGIINGN---EALPYPPKHNDFYSAT 162
NV+ A E + + P++ + + I N + LPYP + + FY +
Sbjct: 136 NVLFAIKEFGEECHLVKLGTMGEYGTPNIDIEEGYITITHNGRTDTLPYPKQASSFYHLS 195
Query: 163 KAEGEALVIKANGTNGLLTCCIRPSSIFGPG-------DRLL------------VPSLVA 203
K + G+ + ++G + L +
Sbjct: 196 KVHDSHNIAFTCKAWGIRATDLNQGVVYGVKTDETEMHEELRNRLDYDAVFGTALNRFCV 255
Query: 204 AARAGKSKFIIGDGNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMESI 263
A G + G G + + + A +A A + V N +
Sbjct: 256 QAAVGHPLTVYGKGGQTRGYLDIRDTVQCVEIA---------IANPAKAGEFRVFNQFTE 306
Query: 264 KFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELTYRLLGPYGMKVPQLT---PSR-- 318
+F + E + L + G+ V ++T P
Sbjct: 307 QF-----SVNE---------------------LASLVTKAGSKLGLDVKKMTVPNPRVEA 340
Query: 319 --VRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSY 356
+ +K + LG P + + ++
Sbjct: 341 EEHYYNA-----KHTKLME-LGLEPHYLSDSLLDSLLNFA 374
|
| >2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens} Length = 342 | Back alignment and structure |
|---|
Score = 79.4 bits (196), Expect = 2e-16
Identities = 45/260 (17%), Positives = 86/260 (33%), Gaps = 47/260 (18%)
Query: 11 VVTGGRGFAARHLVEMLIR------YDMFSVRIADLSDSIALEPHEEQGILGEALRSGRA 64
+ G G R L + L++ + + D+ +P G SG
Sbjct: 18 AIIGAAGMVGRKLTQRLVKDGSLGGKPVEKFTLIDV-----FQPEAPAGF------SGAV 66
Query: 65 HYVSFDLRHKAQVLQALQ-GAEVVFHMAAPNS--SINNHKLHHSVNVEGTKNVIDACAEL 121
+ DL + + ++ +V+FH+AA S + + + +N++GT+ + DA
Sbjct: 67 DARAADLSAPGEAEKLVEARPDVIFHLAAIVSGEAELDFDKGYRINLDGTRYLFDAIRIA 126
Query: 122 KVK-----RLIYTSSPSVVFDGVHGIINGNEALPYPPKH----NDFYSATKAEGEALVIK 172
K R+++TSS V G P P + Y KA E L+
Sbjct: 127 NGKDGYKPRVVFTSSI-----AVFG---APLPYPIPDEFHTTPLTSYGTQKAICELLLSD 178
Query: 173 ANGTNGLLTCCIRPSSIFG-PGDRL-----LVPSLVAAARAGKSKFIIGDGNNVYDFTY- 225
+ IR +I PG +++ G+ + + +
Sbjct: 179 YSRRGFFDGIGIRLPTICIRPGKPNAAASGFFSNILREPLVGQEAVLPVPESIRHWHASP 238
Query: 226 ---VANVAHAHICAERALAS 242
V + H + +
Sbjct: 239 RSAVGFLIHGAMIDVEKVGP 258
|
| >1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A Length = 342 | Back alignment and structure |
|---|
Score = 78.1 bits (193), Expect = 5e-16
Identities = 63/377 (16%), Positives = 113/377 (29%), Gaps = 84/377 (22%)
Query: 12 VTGGRGFAARHLVEMLIRYDMFSVRIA--DLSDSIALEPHEEQGILGEALRSGRAHYVSF 69
VTG GF A H+VE L+ + + VR S L+ V
Sbjct: 16 VTGANGFVASHVVEQLLEHG-YKVRGTARSASKLANLQKR-----WDAKYPGRFETAVVE 69
Query: 70 DLRHKAQVLQALQGAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELK-VKRLIY 128
D+ + + ++GA V H+A+ S N + + + GT N + A A VKR +
Sbjct: 70 DMLKQGAYDEVIKGAAGVAHIASVVSFSNKYDEVVTPAIGGTLNALRAAAATPSVKRFVL 129
Query: 129 TSSPSVVFDGVHG---------------IINGNEALPYPPKHNDF-YSATKAEGEALV-- 170
TSS I P+ + + Y+A+K E E
Sbjct: 130 TSSTVSALIPKPNVEGIYLDEKSWNLESIDKAKTLPESDPQKSLWVYAASKTEAELAAWK 189
Query: 171 -IKANGTNGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGK-SKFIIGDGNNVYDFTYVAN 228
+ N + L + P+ G + P + + +G G+ +
Sbjct: 190 FMDENKPHFTLN-AVLPNYTIGT---IFDPETQSGSTSGWMMSLFNGEVSPALALMPPQY 245
Query: 229 ------VAHAHICAERALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPR 282
+ H+ + + + + T + + ++ + P
Sbjct: 246 YVSAVDIGLLHL-----GCLVL---PQIERRRVYGTA-GTFDWNTVLATFRK----LYPS 292
Query: 283 IKIPAFVMMPIAHMVELTYRLLGPYGMKVPQLTPSRVRLLSCSRTFDCSKAKDLLGYMPI 342
PA P + FD + + ++L +
Sbjct: 293 KTFPA----------------------DFPDQGQDLSK-------FDTAPSLEILKSLGR 323
Query: 343 ---VPLEEGIKRTVDSY 356
+EE IK V S
Sbjct: 324 PGWRSIEESIKDLVGSE 340
|
| >4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis} Length = 478 | Back alignment and structure |
|---|
Score = 78.4 bits (193), Expect = 1e-15
Identities = 62/315 (19%), Positives = 95/315 (30%), Gaps = 48/315 (15%)
Query: 11 VVTGGRGFAARHLVEMLIRYDMFS------VRIADLSD------SIALEPHEEQGILGEA 58
++TG GF R+LV L+R VR D E +
Sbjct: 77 LLTGATGFLGRYLVLELLRRLDVDGRLICLVRAESDEDARRRLEKTFDSGDPELLRHFKE 136
Query: 59 LRSGRAHYVSFDLRHK-----AQVLQAL-QGAEVVFHMAAPNSSINNHKLHHSVNVEGTK 112
L + R V+ D + + L + +++ AA + + NV GT
Sbjct: 137 LAADRLEVVAGDKSEPDLGLDQPMWRRLAETVDLIVDSAAM-VNAFPYHELFGPNVAGTA 195
Query: 113 NVIDACAELKVKRLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDF-------YSATKAE 165
+I K+K Y S+ V + + Y +K
Sbjct: 196 ELIRIALTTKLKPFTYVSTADVGAAIEPSAFTEDADIRVISPTRTVDGGWAGGYGTSKWA 255
Query: 166 GEALVIKANGTNGLLTCCIRPSSIFGPGDRL-------LVPSLVAAARA--------GKS 210
GE L+ +AN L R I V +V + A +
Sbjct: 256 GEVLLREANDLCALPVAVFRCGMILADTSYAGQLNMSDWVTRMVLSLMATGIAPRSFYEP 315
Query: 211 KFIIGDGNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTN--MESIKFWEF 268
+D V VA A L + V + A Y V N + I E+
Sbjct: 316 DSEGNRQRAHFDGLPVTFVAEAIA----VLGARVAGSSLAGFATYHVMNPHDDGIGLDEY 371
Query: 269 VSLILEGLGYQRPRI 283
V ++E GY RI
Sbjct: 372 VDWLIE-AGYPIRRI 385
|
| >2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A Length = 338 | Back alignment and structure |
|---|
Score = 75.4 bits (186), Expect = 4e-15
Identities = 80/400 (20%), Positives = 127/400 (31%), Gaps = 114/400 (28%)
Query: 1 MSGE---ENERLCVVTGGRGFAARHLVEMLIR--YDMFSVR--IADLSDSIALEPHEEQG 53
M+ + + CV GG GF A LV++L++ Y +V + D + ++
Sbjct: 1 MATQHPIGKKTACV-VGGTGFVASLLVKLLLQKGY---AVNTTVRDPDN------QKKVS 50
Query: 54 ILGEALRSGRAHYVSFDLRHKAQVLQALQGAEVVFHMAAPNSSINNHKLHHSVN------ 107
L E G DL + + G + VFH+A P +H +
Sbjct: 51 HLLELQELGDLKIFRADLTDELSFEAPIAGCDFVFHVATP--------VHFASEDPENDM 102
Query: 108 ----VEGTKNVIDACAELK-VKRLIYTSS-----------PSVVFD------GVHGIING 145
++G NV+ AC K VKR+I TSS +V D
Sbjct: 103 IKPAIQGVVNVMKACTRAKSVKRVILTSSAAAVTINQLDGTGLVVDEKNWTDIEFLTSAK 162
Query: 146 NEALPYPPKHNDFYSATKAEGEAL-VIKANGTNGLLTCCIRPSSIFGPGDRLLVPSLVAA 204
Y S T AE A + N + L+T P+ + G VPS +
Sbjct: 163 PPTWGY------PASKTLAEKAAWKFAEENNID-LITVI--PTLMAGSSLTSDVPSSIGL 213
Query: 205 ARA---GKSKFIIGDGNNVYDFTYVA-----NVAHAHICAERALASEVTVAEKAAGQAYF 256
A + G I G V+ +V AHI +E E A+G+ Y
Sbjct: 214 AMSLITGNEFLINGMKGMQMLSGSVSIAHVEDVCRAHI-----FVAEK---ESASGR-YI 264
Query: 257 VTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELTYRLLGPYGMKVPQLTP 316
+ E + + + P+ K+P G + K
Sbjct: 265 CCA-ANTSVPELAKFLSK----RYPQYKVPTD---------------FGDFPPKSK---- 300
Query: 317 SRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSY 356
K G+ +EE +V+ +
Sbjct: 301 ---------LIISSEKLVK-EGFSFKYGIEEIYDESVEYF 330
|
| >3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} Length = 286 | Back alignment and structure |
|---|
Score = 73.2 bits (180), Expect = 1e-14
Identities = 34/226 (15%), Positives = 68/226 (30%), Gaps = 24/226 (10%)
Query: 57 EALRSGRAHYVSFDLRHKAQVLQALQGAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVID 116
+ D+ + + + S + + + VEG +N +
Sbjct: 36 AQPMPAGVQTLIADVTRPDTLASIVHLRPEILVYCVAASE-YSDEHYRLSYVEGLRNTLS 94
Query: 117 ACAELKVKRLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANGT 176
A ++ + + SS V V ++ + PP DF E EAL+
Sbjct: 95 ALEGAPLQHVFFVSSTGVYGQEVEEWLDEDT----PPIAKDFSGKRMLEAEALL------ 144
Query: 177 NGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICA 236
+ +R S I+GPG ++ +A + N H A
Sbjct: 145 AAYSSTILRFSGIYGPGRLRMI------RQAQTPEQWPARN-------AWTNRIHRDDGA 191
Query: 237 ERALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPR 282
+ + Y VT+ + + + + + + G P
Sbjct: 192 AFIAYLIQQRSHAVPERLYIVTDNQPLPVHDLLRWLADRQGIAYPA 237
|
| >1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A* Length = 357 | Back alignment and structure |
|---|
Score = 74.1 bits (182), Expect = 1e-14
Identities = 62/331 (18%), Positives = 111/331 (33%), Gaps = 58/331 (17%)
Query: 44 IALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGA--EVVFHMAA-P--NSSIN 98
+L + A + D+R + ++L++++ E+VFHMAA P S +
Sbjct: 39 YSLTAPTVPSLFETARVADGMQSEIGDIRDQNKLLESIREFQPEIVFHMAAQPLVRLSYS 98
Query: 99 NHKLHHSVNVEGTKNVIDACAEL-KVKRLIYTSSPSVVFDGVHGIINGNEALPYPPKHND 157
+S NV GT +++A + VK ++ +S + D
Sbjct: 99 EPVETYSTNVMGTVYLLEAIRHVGGVKAVVNITSDKCYDNKEWIWGYREN---EAMGGYD 155
Query: 158 FYSATKAEGEALVI---------KANGTNGLLTCCIRPSSIFGPGD---RLLVPSLVAAA 205
YS +K E + G +G +R ++ G GD +VP ++ A
Sbjct: 156 PYSNSKGCAELVTSSYRNSFFNPANYGQHGTAVATVRAGNVIGGGDWALDRIVPDILRAF 215
Query: 206 RAGKSKFIIGDGNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAY-FVTNMES-I 263
+ II + + + + +V ++ LA ++ + + F N
Sbjct: 216 EQSQ-PVIIRNPHAIRPWQHVLEPLSGYLL----LAQKLYTDGAEYAEGWNFGPNDADAT 270
Query: 264 KFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELTYRLLGPYGMKVPQLTPSRVRLLS 323
V +++ G AH E Y L
Sbjct: 271 PVKNIVEQMVKYWGEGASWQLDGN------AHPHEAHYLKL------------------- 305
Query: 324 CSRTFDCSKAKDLLGYMPIVPLEEGIKRTVD 354
DCSKAK LG+ P L ++ V
Sbjct: 306 -----DCSKAKMQLGWHPRWNLNTTLEYIVG 331
|
| >2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A* Length = 343 | Back alignment and structure |
|---|
Score = 72.4 bits (178), Expect = 4e-14
Identities = 76/387 (19%), Positives = 133/387 (34%), Gaps = 83/387 (21%)
Query: 4 EENERLCVVTGGRGFAARHLVEMLIRY--------DMFSVRIADLSDSIALEPHEEQGIL 55
E++ + ++TGG GF HL + L+ + F+ R ++ HE
Sbjct: 24 EKDRKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEH---WIGHE----- 75
Query: 56 GEALRSGRAHYVSFDLRHKAQVLQALQGAEVVFHMAAPNSSINNHKLH---HSVNVEGTK 112
++ D+ + + ++H+A+P S N N GT
Sbjct: 76 -------NFELINHDVVEPLYI-----EVDQIYHLASPASPPNYMYNPIKTLKTNTIGTL 123
Query: 113 NVIDACAELKVKRLIYTSSPSVVFDG-VHGIINGNEALPYPPKHNDFYSATKAEGEALVI 171
N++ + RL+ S+ V D VH P Y K E +
Sbjct: 124 NMLGLAKRVG-ARLLLASTSEVYGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCY 182
Query: 172 KANGTNGLLTCCIRPSSIFGPG----DRLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVA 227
G+ R + FGP D +V + + A G+ + G G+ F YV+
Sbjct: 183 AYMKQEGVEVRVARIFNTFGPRMHMNDGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVS 242
Query: 228 NVAHAHICAERALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPA 287
++ + + + S V+ + N E EF LI +G
Sbjct: 243 DLVNGLV---ALMNSNVS-------SPVNLGNPEEHTILEFAQLIKNLVG---------- 282
Query: 288 FVMMPIAHMVELTYRLLGPYGMKVPQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEE 347
E+ + Q P + R D KAK +LG+ P+VPLEE
Sbjct: 283 -------SGSEIQFLSE-------AQDDPQK-------RKPDIKKAKLMLGWEPVVPLEE 321
Query: 348 GIKRTVDSYSHLRAENQLKRVGPSKAS 374
G+ + + + +L+ ++ S
Sbjct: 322 GLNKAIHYF-----RKELEYQANNQGS 343
|
| >1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* Length = 206 | Back alignment and structure |
|---|
Score = 68.1 bits (167), Expect = 2e-13
Identities = 30/250 (12%), Positives = 72/250 (28%), Gaps = 54/250 (21%)
Query: 11 VVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFD 70
+ G G + ++ + V L + + AH V D
Sbjct: 7 AIFGATGQTGLTTLAQAVQAG-YEVT--------VLVRDSSRL---PSEGPRPAHVVVGD 54
Query: 71 LRHKAQVLQALQGAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTS 130
+ A V + + G + V + + ++ V EG +N++ A V +++ +
Sbjct: 55 VLQAADVDKTVAGQDAVIVLLGTRNDLSPTT----VMSEGARNIVAAMKAHGVDKVVACT 110
Query: 131 SPSVVFDGVHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANGTNGLLTCCIRPSSIF 190
S +++D P + ++ ++ GL + P I
Sbjct: 111 SAFLLWDP-----------TKVPPRLQAVTDDHIRMHKVLRES----GLKYVAVMPPHIG 155
Query: 191 -GPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICAERALASEVTVAEK 249
P + DG ++ + +T ++
Sbjct: 156 DQPLTGAYT--------------VTLDGRGPSRVISKHDLG-------HFMLRCLT-TDE 193
Query: 250 AAGQAYFVTN 259
G + + ++
Sbjct: 194 YDGHSTYPSH 203
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} Length = 221 | Back alignment and structure |
|---|
Score = 67.3 bits (164), Expect = 5e-13
Identities = 37/253 (14%), Positives = 69/253 (27%), Gaps = 42/253 (16%)
Query: 11 VVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFD 70
+ G G A ++E V A+ + + + + D
Sbjct: 4 GIIGATGRAGSRILEEAKNRG-HEVT--------AIVRNAGKI----TQTHKDINILQKD 50
Query: 71 LRHKAQVLQALQGAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTS 130
+ L L VV + +V ++I RL+
Sbjct: 51 IF--DLTLSDLSDQNVVVDAYGISPD------EAEKHVTSLDHLISVLNGTVSPRLLVVG 102
Query: 131 SPSVVFDGVHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANGTNGLLTCCIRPSSIF 190
+ + G E+ +Y +A+ + L + I PS++F
Sbjct: 103 GAASLQIDEDGNT-LLESKGLRE--APYYPTARAQAKQLEHLKSHQAEFSWTYISPSAMF 159
Query: 191 GPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHI-CAERALASEVTVAEK 249
PG+R + GK + G N F + + A A + ER
Sbjct: 160 EPGERT------GDYQIGKDHLLFGSDGN--SFISMEDYAIAVLDEIER---------PN 202
Query: 250 AAGQAYFVTNMES 262
+ + V
Sbjct: 203 HLNEHFTVAGKLE 215
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} Length = 224 | Back alignment and structure |
|---|
Score = 65.8 bits (160), Expect = 2e-12
Identities = 29/249 (11%), Positives = 58/249 (23%), Gaps = 38/249 (15%)
Query: 11 VVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFD 70
V G G A +V R V A+ ++ + +
Sbjct: 4 AVLGATGRAGSAIVAEARRRG-HEVL--------AVVRDPQKA---ADRLGATVATLVKE 51
Query: 71 LRHKAQVLQALQGAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTS 130
L + V + ++++ +++ +
Sbjct: 52 PL--VLTEADLDSVDAVVDALSVPWGSG----RGYLHLDFATHLVSLLRNSDTLAVFILG 105
Query: 131 SPSVVFDGVHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANGTNGLLTCCIRPSSIF 190
S S+ G P +Y + + I PS F
Sbjct: 106 SASLAMPGADHP--MILDFPESAASQPWYDGALYQYYEYQFLQMNA-NVNWIGISPSEAF 162
Query: 191 GPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICAERALASEVTVAEKA 250
G + AGK ++G+ N+A A+ ++ A
Sbjct: 163 PSGPA-------TSYVAGKDTLLVGEDG--QSHITTGNMA-------LAILDQLE-HPTA 205
Query: 251 AGQAYFVTN 259
V +
Sbjct: 206 IRDRIVVRD 214
|
| >1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2 Length = 347 | Back alignment and structure |
|---|
Score = 66.8 bits (164), Expect = 3e-12
Identities = 64/382 (16%), Positives = 121/382 (31%), Gaps = 88/382 (23%)
Query: 12 VTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDL 71
+TGG GF +L + + + +LS A + L G +V D+
Sbjct: 6 ITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGATDN------LHWLSSLGNFEFVHGDI 59
Query: 72 RHKAQVLQALQ--GAEVVFHMAAP---NSSINNHKLHHSVNVEGTKNVIDACAELKVK-R 125
R+K V + + + FH+A +SI+N + +NV GT N+++A +
Sbjct: 60 RNKNDVTRLITKYMPDSCFHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCN 119
Query: 126 LIYTS---------SPSVVFDGVHGIING-----NEALPYPPKHNDFYSATKAEGEALVI 171
+IY+S +E+ + Y +K + ++
Sbjct: 120 IIYSSTNKVYGDLEQYKYNETETRYTCVDKPNGYDESTQLDF--HSPYGCSKGAADQYML 177
Query: 172 KANGTNGLLTCCIRPSSIFGP-----GDRLLVP-----SLVAAARAGKSKFIIGDGNNVY 221
GL T R SS++G D+ V ++ K I G+G V
Sbjct: 178 DYARIFGLNTVVFRHSSMYGGRQFATYDQGWVGWFCQKAVEIKNGINKPFTISGNGKQVR 237
Query: 222 DFTYVANVAHAHICAERALASEVTVAEKAAGQAYFV--TNMESIKFWEFVSLILEGLGYQ 279
D + + + + K G A+ + T + S+ E L+ +
Sbjct: 238 DVLHAED--MI-----SLYFTALANVSKIRGNAFNIGGTIVNSLSLLELFKLLEDYCNI- 289
Query: 280 RPRIKIPAFVMMPIAHMVELTYRLLGP-----YGMKVPQLTPSRVRLLSCSRTFDCSKAK 334
R + R + D K
Sbjct: 290 DMRFT---NL----------PVR---ESDQRVFVA-------------------DIKKIT 314
Query: 335 DLLGYMPIVPLEEGIKRTVDSY 356
+ + + P V ++G+++ D
Sbjct: 315 NAIDWSPKVSAKDGVQKMYDWT 336
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} Length = 236 | Back alignment and structure |
|---|
Score = 64.7 bits (158), Expect = 5e-12
Identities = 39/249 (15%), Positives = 67/249 (26%), Gaps = 51/249 (20%)
Query: 11 VVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFD 70
+V G G AR+L+ L A+ +EEQ E G + V +
Sbjct: 25 LVVGANGKVARYLLSELKNKG-HEPV--------AMVRNEEQ--GPELRERGASDIVVAN 73
Query: 71 LRHKAQVLQALQGAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTS 130
L A + V A K +++ G I + +KR I S
Sbjct: 74 LE--EDFSHAFASIDAVVFAAGSGPHTGADK-TILIDLWGAIKTIQEAEKRGIKRFIMVS 130
Query: 131 SPSVVFDGVHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANGTNGLLTCCIRPSSIF 190
S G P + Y K + + ++ L +RP +
Sbjct: 131 S------------VGTVDPDQGPMNMRHYLVAKRLADDELKRS----SLDYTIVRPGPLS 174
Query: 191 GPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICAERALASEVTVAEKA 250
V + + + +VA + +
Sbjct: 175 NEESTGKVT-------------VSPHFSEITRSITRHDVAK---VIAELVDQ-----QHT 213
Query: 251 AGQAYFVTN 259
G+ + V N
Sbjct: 214 IGKTFEVLN 222
|
| >1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A* Length = 253 | Back alignment and structure |
|---|
Score = 64.9 bits (158), Expect = 5e-12
Identities = 45/278 (16%), Positives = 76/278 (27%), Gaps = 60/278 (21%)
Query: 11 VVTGGRGFAARHLVEMLI-RYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSF 69
+VTG G + + + L D F + L + + G A
Sbjct: 8 LVTGASGRTGQIVYKKLKEGSDKFVAK--------GLVRSAQG----KEKIGGEADVFIG 55
Query: 70 DLRHKAQVLQALQGAEVVFHMAA----------------PNSSINNHKLHHSVNVEGTKN 113
D+ + A QG + + + + P + + V+ G KN
Sbjct: 56 DITDADSINPAFQGIDALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKN 115
Query: 114 VIDACAELKVKRLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDFYSATKAEGEALVIKA 173
IDA VK ++ S N P N K + E + +
Sbjct: 116 QIDAAKVAGVKHIVVVGSMGG----------TNPDHPLNKLGNGNILVWKRKAEQYLADS 165
Query: 174 NGTNGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAH 233
G IR + V GK ++ A+VA
Sbjct: 166 ----GTPYTIIRAGGLLDK------EGGVRELLVGKDDELLQTDTKTVP---RADVAEV- 211
Query: 234 ICAERALASEVTVAEKAAGQAYFVTNMESIKFWEFVSL 271
C + AL E+A +A+ + +
Sbjct: 212 -CIQ-ALLF-----EEAKNKAFDLGSKPEGTSTPTKDF 242
|
| >3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 3r14_A* Length = 221 | Back alignment and structure |
|---|
Score = 64.3 bits (156), Expect = 6e-12
Identities = 26/184 (14%), Positives = 57/184 (30%), Gaps = 30/184 (16%)
Query: 11 VVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFD 70
+ G G A+ L L+ Y + + I E + R +
Sbjct: 9 TILGAAGQIAQXLTATLLTYTDMHIT--------LYGRQLKTRIPPEIIDHERVTVIEGS 60
Query: 71 LRHKAQVLQALQGAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTS 130
++ + QA+ AEVVF A + +++ A + ++R+I S
Sbjct: 61 FQNPGXLEQAVTNAEVVFVGAMESG-------------SDMASIVKALSRXNIRRVIGVS 107
Query: 131 SPSVVFDGVHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANGTNGLLTCCIRPSSIF 190
G+ G Y + + ++ + + L +R + ++
Sbjct: 108 MA-----GLSGEFPVALEKWTFDNLPISYVQGERQARNVLRE----SNLNYTILRLTWLY 158
Query: 191 GPGD 194
+
Sbjct: 159 NDPE 162
|
| >3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} Length = 219 | Back alignment and structure |
|---|
Score = 63.9 bits (156), Expect = 7e-12
Identities = 33/250 (13%), Positives = 75/250 (30%), Gaps = 55/250 (22%)
Query: 11 VVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFD 70
+ G G + L++ L D + + A EQ + +A + D
Sbjct: 4 FIVGSTGRVGKSLLKSLSTTD-YQIY--------AGARKVEQV---PQYNNVKAVHFDVD 51
Query: 71 LRHKAQVLQALQGAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTS 130
++ + L G + + +++ K V++ G ++ A + +VKR I S
Sbjct: 52 WT-PEEMAKQLHGMDAIINVSGSGG-----KSLLKVDLYGAVKLMQAAEKAEVKRFILLS 105
Query: 131 SPSVVFDGVHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANGTNGLLTCCI-RPSSI 189
+ + + + Y K + + K L I +P ++
Sbjct: 106 T--------IFSLQPEKWIGAGFDALKDYYIAKHFADLYLTKETN----LDYTIIQPGAL 153
Query: 190 FGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICAERALASEVTVAEK 249
I D + + +VA + + + +
Sbjct: 154 TEE--------------EATGLIDINDEVSA--SNTIGDVAD---TIKELVMT-----DH 189
Query: 250 AAGQAYFVTN 259
+ G+ + N
Sbjct: 190 SIGKVISMHN 199
|
| >2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A Length = 242 | Back alignment and structure |
|---|
Score = 61.8 bits (150), Expect = 5e-11
Identities = 35/230 (15%), Positives = 52/230 (22%), Gaps = 44/230 (19%)
Query: 10 CVVTGGRGFAARHLVEMLIRYDMFS-----VRIADLSDSIALEPHEEQGILGEALRSGRA 64
+ G G R L++ ++ +FS R D A + +
Sbjct: 21 VFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNVNQ------------- 67
Query: 65 HYVSFDLRHKAQVLQALQGAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVK 124
D A QG +V F + V+ + + K
Sbjct: 68 --EVVDFEKLDDYASAFQGHDVGFCCLGTTRGKAGAEGFVRVDRDYVLKSAELAKAGGCK 125
Query: 125 RLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANGTNGLLTCCI 184
SS G N Y K E EA V +
Sbjct: 126 HFNLLSS-----KGAD------------KSSNFLYLQVKGEVEAKVEELKFDR---YSVF 165
Query: 185 RPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHI 234
RP + S K + D V V A +
Sbjct: 166 RPGVLLCDRQE----SRPGEWLVRKFFGSLPDSWASGHSVPVVTVVRAML 211
|
| >1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2 Length = 308 | Back alignment and structure |
|---|
Score = 62.2 bits (151), Expect = 7e-11
Identities = 41/277 (14%), Positives = 85/277 (30%), Gaps = 38/277 (13%)
Query: 11 VVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFD 70
++ G G+ RH+ + + + + + + Q + E+ ++ A+ V
Sbjct: 8 LLIGATGYIGRHVAKASLDLG-HPTFLLVRESTASSNSEKAQLL--ESFKASGANIVHGS 64
Query: 71 LRHKAQVLQALQGAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTS 130
+ A +++A++ +VV S+ +E N+I A E+ + + S
Sbjct: 65 IDDHASLVEAVKNVDVVISTVG------------SLQIESQVNIIKAIKEVGTVKRFFPS 112
Query: 131 SPSVVFDGVHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANGTNGLLTCCIRPSSIF 190
D VH + KA+ + G+ + +
Sbjct: 113 EFGNDVDNVHAVEPAKSVF-----------EVKAKVRRAIEAE----GIPYTYVSSNCFA 157
Query: 191 GPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICAERALASEVTVAEKA 250
G R L A I+GDGN F ++ V
Sbjct: 158 GYFLRSL-AQAGLTAPPRDKVVILGDGNARVVFVKEEDIG-------TFTIKAVDDPRTL 209
Query: 251 AGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPA 287
Y ++ E V+L + + + +P
Sbjct: 210 NKTLYLRLPANTLSLNELVALWEKKIDKTLEKAYVPE 246
|
| >1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A {Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A* Length = 337 | Back alignment and structure |
|---|
Score = 62.5 bits (153), Expect = 7e-11
Identities = 87/377 (23%), Positives = 139/377 (36%), Gaps = 102/377 (27%)
Query: 12 VTGGRGFAARHLVEMLIR---YDMFSVRIADLSDSIA----LEPHEEQGILGEALRSGRA 64
VTGG GF H V L+ D+ + + L DS+ L R
Sbjct: 5 VTGGAGFIGSHFVRQLLAGAYPDVPADEVIVL-DSLTYAGNRAN------LAPVDADPRL 57
Query: 65 HYVSFDLRHKAQVLQALQGAEVVFHMAAPNS----SINNHKLHHSVNVEGTKNVIDACAE 120
+V D+R + + L+G + + H AA S SI + NV+GT+ ++ +
Sbjct: 58 RFVHGDIRDAGLLARELRGVDAIVHFAA-ESHVDRSIAGASVFTETNVQGTQTLLQCAVD 116
Query: 121 LKVKRLIYTSSPSVVFDGVHGIING---NEALPYPPKHNDFYSATKAEGEALVIKANGTN 177
V R+++ S+ + V+G I+ E+ P P N Y+A+KA + + + T
Sbjct: 117 AGVGRVVHVST-----NQVYGSIDSGSWTESSPLEP--NSPYAASKAGSDLVARAYHRTY 169
Query: 178 GLLTCCIRPSSIFGP------GDRLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAH 231
GL R + +GP L+P V G + + GDG NV ++ + + H
Sbjct: 170 GLDVRITRCCNNYGPYQHPEK----LIPLFVTNLLDGGTLPLYGDGANVREWVHTDD--H 223
Query: 232 AHICAERALASEVTVAEK-AAGQAYFV------TNMESIKFWEFVSLILEGLGYQRPRIK 284
R +A V AG+ Y + TN E ++L+ LG ++
Sbjct: 224 C-----RGIA---LVLAGGRAGEIYHIGGGLELTNR------ELTGILLDSLGADWSSVR 269
Query: 285 IPAFVMMPIAHMVELTYRLLGP-----YGMKVPQLTPSRVRLLSCSRTFDCSKAKDLLGY 339
V R Y + D K + LGY
Sbjct: 270 ---KV----------ADR---KGHDLRYSL-------------------DGGKIERELGY 294
Query: 340 MPIVPLEEGIKRTVDSY 356
P V +G+ RTV Y
Sbjct: 295 RPQVSFADGLARTVRWY 311
|
| >2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A* Length = 344 | Back alignment and structure |
|---|
Score = 61.1 bits (149), Expect = 2e-10
Identities = 39/189 (20%), Positives = 68/189 (35%), Gaps = 48/189 (25%)
Query: 12 VTGGRGFAARHLVEMLI-RYDMFSVRIADLS-DSIALEPHEEQGILGEALRSGRAHYVSF 69
+TGG G + V ++ + + + S D E +Q + R +
Sbjct: 26 ITGGTGSFGKCFVRKVLDTTNAKKIIV--YSRD----E--LKQSEMAMEFNDPRMRFFIG 77
Query: 70 DLRHKAQVLQALQGAEVVFHMAA----------PNSSINNHKLHHSVNVEGTKNVIDACA 119
D+R ++ AL+G ++ H AA P I N+ G NVI+AC
Sbjct: 78 DVRDLERLNYALEGVDICIHAAALKHVPIAEYNPLECIK-------TNIMGASNVINACL 130
Query: 120 ELKVKRLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDFYSATKAEGEALVIKAN---GT 176
+ + ++I S+ P + Y ATK + L + AN G+
Sbjct: 131 KNAISQVIALSTDKAA---------------NP---INLYGATKLCSDKLFVSANNFKGS 172
Query: 177 NGLLTCCIR 185
+ +R
Sbjct: 173 SQTQFSVVR 181
|
| >3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A} Length = 236 | Back alignment and structure |
|---|
Score = 58.3 bits (141), Expect = 8e-10
Identities = 28/181 (15%), Positives = 53/181 (29%), Gaps = 32/181 (17%)
Query: 11 VVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFD 70
++ G G ARH++ L + + + D
Sbjct: 27 LILGAGGQIARHVINQLADKQTIKQT--------LFARQPAKI---HKPYPTNSQIIMGD 75
Query: 71 LRHKAQVLQALQGAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTS 130
+ + A + QA+QG ++V+ +VI A VKRLI+
Sbjct: 76 VLNHAALKQAMQGQDIVYANLTGED-----------LDIQANSVIAAMKACDVKRLIFVL 124
Query: 131 SPSVVFDGVHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANGTNGLLTCCIRPSSIF 190
S + + + N A+ + + GL +RP+ +
Sbjct: 125 SLGIYDEVPGKFVEWNNAVIGE------PLKPFRRAADAIEAS----GLEYTILRPAWLT 174
Query: 191 G 191
Sbjct: 175 D 175
|
| >1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2 Length = 313 | Back alignment and structure |
|---|
Score = 56.9 bits (137), Expect = 4e-09
Identities = 35/277 (12%), Positives = 73/277 (26%), Gaps = 33/277 (11%)
Query: 11 VVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFD 70
++ GG G+ + +V I + + ++ + + A +
Sbjct: 8 LIVGGTGYIGKRIVNASISLG-HPTYVLFRPEVVSNIDKVQML---LYFKQLGAKLIEAS 63
Query: 71 LRHKAQVLQALQGAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTS 130
L +++ AL+ +VV A S ++ +++A E + S
Sbjct: 64 LDDHQRLVDALKQVDVVISALAGGVL--------SHHILEQLKLVEAIKEAGNIKRFLPS 115
Query: 131 SPSVVFDGVHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANGTNGLLTCCIRPSSIF 190
F G+ P F K + + A + + +
Sbjct: 116 E----F----GMDPDIMEHALQPGSITF--IDKRKVRRAIEAA----SIPYTYVSSNMFA 161
Query: 191 GPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICAERALASEVTVAEKA 250
G L I GDGN + +V + +
Sbjct: 162 GYFAGSLAQLDGHMMPPRDKVLIYGDGNVKGIWVDEDDVG-------TYTIKSIDDPQTL 214
Query: 251 AGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPA 287
Y M + E + + +I I +
Sbjct: 215 NKTMYIRPPMNILSQKEVIQIWERLSEQNLDKIYISS 251
|
| >1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1 Length = 660 | Back alignment and structure |
|---|
Score = 55.8 bits (135), Expect = 2e-08
Identities = 69/367 (18%), Positives = 118/367 (32%), Gaps = 59/367 (16%)
Query: 12 VTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDL 71
+ G GF HL E L+R D + V D+ + L H+V D+
Sbjct: 320 ILGVNGFIGNHLTERLLREDHYEVYGLDIGSD----------AISRFLNHPHFHFVEGDI 369
Query: 72 R-HKAQVLQALQGAEVVFHMAAPNSSI--NNHKLH-HSVNVEGTKNVIDACAELKVKRLI 127
H + ++ +VV + A + I + L ++ E +I C + + KR+I
Sbjct: 370 SIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYR-KRII 428
Query: 128 YTSSPSVVFD-GVHGIINGNEALPYPPKHND--FYSATKAEGEALVIKANGTNGLLTCCI 184
+ S+ V + L P + YS +K + ++ GL
Sbjct: 429 FPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLF 488
Query: 185 RPSSIFGP----------GDRLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHA-- 232
RP + GP G + L+ G +I G FT + + A
Sbjct: 489 RPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALY 548
Query: 233 HICAERALASEVTVAEKAAGQAYFV---TNMESIKFWEFVSLILEGLGYQRPRIKIPAFV 289
I + G+ + N SI+ E ++L R P F
Sbjct: 549 RIIENA--------GNRCDGEIINIGNPENEASIE--ELGEMLLASFEKHPLRHHFPPFA 598
Query: 290 MMPIAHMVELTYRLLGPYGMKVPQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGI 349
+ +Y YG + R A L + P + ++E I
Sbjct: 599 --GFRVVESSSY-----YGKGYQDVE---------HRKPSIRNAHRCLDWEPKIDMQETI 642
Query: 350 KRTVDSY 356
T+D +
Sbjct: 643 DETLDFF 649
|
| >2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A Length = 299 | Back alignment and structure |
|---|
Score = 53.2 bits (128), Expect = 7e-08
Identities = 58/324 (17%), Positives = 100/324 (30%), Gaps = 58/324 (17%)
Query: 1 MSGEENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIA--DLSDSIALEPHEEQGILGEA 58
M +++L VV GG G + L+ F VR+ + A +
Sbjct: 2 MV---DKKLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPRKKAA-----------KE 47
Query: 59 LRSGRAHYVSFDLRHKAQVLQALQGAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDAC 118
LR A V D + + AL GA F + S + + V+ K + D
Sbjct: 48 LRLQGAEVVQGDQDDQVIMELALNGAYATFIVTNYWESCSQEQ-----EVKQGKLLADLA 102
Query: 119 AELKVKRLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANGTNG 178
L + ++Y+ + + G H D K E E G
Sbjct: 103 RRLGLHYVVYSGLE-----NIKKLTAG----RLAAAHFD----GKGEVEEYFRDI----G 145
Query: 179 LLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICAE- 237
+ +R F + LL L A GKS + +V +
Sbjct: 146 VPMTSVRLPCYF---ENLLSHFLPQKAPDGKSYLL---------SLPTGDVPMDGMSVSD 193
Query: 238 --RALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIP----AFVMM 291
+ S + + EK GQ ++ E+ +L+ + K+ +
Sbjct: 194 LGPVVLSLLKMPEKYVGQNIGLST-CRHTAEEYAALLTKHTRKVVHDAKMTPEDYEKLGF 252
Query: 292 PIAHMVELTYRLLGPYGMKVPQLT 315
P A + +R + +LT
Sbjct: 253 PGARDLANMFRFYALRPDRDIELT 276
|
| >2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa} Length = 307 | Back alignment and structure |
|---|
Score = 51.0 bits (122), Expect = 3e-07
Identities = 38/277 (13%), Positives = 82/277 (29%), Gaps = 37/277 (13%)
Query: 11 VVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFD 70
++ G G RH+V I+ + + + +I E + L + +S + D
Sbjct: 6 LILGPTGAIGRHIVWASIKAGNPTYAL--VRKTITAANPETKEELIDNYQSLGVILLEGD 63
Query: 71 LRHKAQVLQALQGAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTS 130
+ +++A++ ++V A + +E +I A E + + S
Sbjct: 64 INDHETLVKAIKQVDIVICAAGR------------LLIEDQVKIIKAIKEAGNVKKFFPS 111
Query: 131 SPSVVFDGVHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANGTNGLLTCCIRPSSIF 190
+ D + + KA ++ G+ + +
Sbjct: 112 EFGLDVDRHDAVEPVRQVF-----------EEKASIRRVIEAE----GVPYTYLCCHAFT 156
Query: 191 GPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICAERALASEVTVAEKA 250
G R L L A I+GDGN + A+V
Sbjct: 157 GYFLRNL-AQLDATDPPRDKVVILGDGNVKGAYVTEADVG-------TFTIRAANDPNTL 208
Query: 251 AGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPA 287
+ + E ++L + +G + +
Sbjct: 209 NKAVHIRLPKNYLTQNEVIALWEKKIGKTLEKTYVSE 245
|
| >2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii} Length = 336 | Back alignment and structure |
|---|
Score = 50.6 bits (122), Expect = 4e-07
Identities = 88/379 (23%), Positives = 138/379 (36%), Gaps = 109/379 (28%)
Query: 12 VTGGRGFAARHLV-EMLIRYDMFSVRIAD-------LSDSIALEPHEEQGILGEALRSGR 63
VTGG GF + + +L ++ + V D ++ LE R
Sbjct: 8 VTGGMGFIGSNFIRYILEKHPDWEVINIDKLGYGSNPANLKDLEDDP------------R 55
Query: 64 AHYVSFDLRHKAQVLQALQGAEVVFHMAAPNS----SINNHKLHHSVNVEGTKNVIDACA 119
+V D+ V + ++ + V H+AA S SI++ ++ NV GT ++++
Sbjct: 56 YTFVKGDVADYELVKELVRKVDGVVHLAA-ESHVDRSISSPEIFLHSNVIGTYTLLESIR 114
Query: 120 ELKV-KRLIYTSSPSVVFDGVHGIING---NEALPYPPKHNDFYSATKAEGEALVIKANG 175
R ++ S+ D V+G I E P + YSATKA + LV+
Sbjct: 115 RENPEVRFVHVST-----DEVYGDILKGSFTENDRLMP--SSPYSATKAASDMLVLGWTR 167
Query: 176 TNGLLTCCIRPSSIFGP------GDRLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANV 229
T L R ++ +GP L+P + A G I G G NV D+ YV +
Sbjct: 168 TYNLNASITRCTNNYGPYQFPEK----LIPKTIIRASLGLKIPIYGTGKNVRDWLYVED- 222
Query: 230 AHAHICAERALASEVTVAEK-AAGQAYFV------TNMESIKFWEFVSLILEGLGYQRPR 282
H RA+ V K + + Y + TN+ E V +IL +G
Sbjct: 223 -HV-----RAIE---LVLLKGESREIYNISAGEEKTNL------EVVKIILRLMGKGEEL 267
Query: 283 IKIPAFVMMPIAHMVELTYRLLGP-----YGMKVPQLTPSRVRLLSCSRTFDCSKAKDLL 337
I+ V R P Y + D K L
Sbjct: 268 IE---LV----------EDR---PGHDLRYSL-------------------DSWKITRDL 292
Query: 338 GYMPIVPLEEGIKRTVDSY 356
+ P +EGIK+T+D Y
Sbjct: 293 KWRPKYTFDEGIKKTIDWY 311
|
| >4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis} Length = 346 | Back alignment and structure |
|---|
Score = 50.2 bits (121), Expect = 6e-07
Identities = 81/376 (21%), Positives = 138/376 (36%), Gaps = 101/376 (26%)
Query: 12 VTGGRGFAARHLV-EMLIRYDMFSVRIADL------SDSIALEPHEEQGILGEALRSGRA 64
VTGG GF + V ML Y+ + + D ++ +
Sbjct: 29 VTGGAGFIGSNFVHYMLQSYETYKIINFDALTYSGNLNN-----------VKSIQDHPNY 77
Query: 65 HYVSFDLRHKAQVLQALQGAEV--VFHMAAPNS----SINNHKLHHSVNVEGTKNVIDAC 118
++V ++++ + ++ +V + + AA S SI N + NV GT +++
Sbjct: 78 YFVKGEIQNGELLEHVIKERDVQVIVNFAA-ESHVDRSIENPIPFYDTNVIGTVTLLELV 136
Query: 119 AELKVKRLIYTSSPSVVFDGVHGIINGN----EALPYPPKHNDFYSATKAEGEALVIKAN 174
+ +L+ S+ D V+G + E P P N YS++KA + + +
Sbjct: 137 KKYPHIKLVQVST-----DEVYGSLGKTGRFTEETPLAP--NSPYSSSKASADMIALAYY 189
Query: 175 GTNGLLTCCIRPSSIFGPG--DRLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHA 232
T L R S+ +GP L+P +V A GK + GDG NV D+ +V + H
Sbjct: 190 KTYQLPVIVTRCSNNYGPYQYPEKLIPLMVTNALEGKKLPLYGDGLNVRDWLHVTD--HC 247
Query: 233 HICAERALASEVTVAEK-AAGQAYFV------TNMESIKFWEFVSLILEGLGYQRPRIKI 285
A+ V K G+ Y + TN+ E V I+ LG + I+
Sbjct: 248 -----SAID---VVLHKGRVGEVYNIGGNNEKTNV------EVVEQIITLLGKTKKDIE- 292
Query: 286 PAFVMMPIAHMVELTYRLLGP-----YGMKVPQLTPSRVRLLSCSRTFDCSKAKDLLGYM 340
+V T R Y + + K K+ +
Sbjct: 293 --YV----------TDR---LGHDRRYAI-------------------NAEKMKNEFDWE 318
Query: 341 PIVPLEEGIKRTVDSY 356
P E+G++ TV Y
Sbjct: 319 PKYTFEQGLQETVQWY 334
|
| >3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp} Length = 289 | Back alignment and structure |
|---|
Score = 49.2 bits (118), Expect = 1e-06
Identities = 15/124 (12%), Positives = 37/124 (29%), Gaps = 18/124 (14%)
Query: 11 VVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFD 70
++TG G H+ I + I + G+ D
Sbjct: 4 MLTGATGHLGTHITNQAIANHIDHFHIGVRNVEKV-----------PDDWRGKVSVRQLD 52
Query: 71 LRHKAQVLQALQGAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTS 130
++ +++A +G + V + + +N++ A + V +I+
Sbjct: 53 YFNQESMVEAFKGMDTVVFIPSIIHPSFKRIPEV-------ENLVYAAKQSGVAHIIFIG 105
Query: 131 SPSV 134
+
Sbjct: 106 YYAD 109
|
| >2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2 Length = 215 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 2e-06
Identities = 29/233 (12%), Positives = 66/233 (28%), Gaps = 54/233 (23%)
Query: 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLS-DSIALEPHEEQGILGEALRSGRA 64
+ ++ G G HL++ ++ ++ + ++A P +
Sbjct: 4 TPKRVLLAGATGLTGEHLLDRILSEPTL-AKVIAPARKALAEHPRLDN------------ 50
Query: 65 HYVSFDLRHKAQVLQALQGAEVVFH-----MAAPNSSINNHKLHHSVNVEGTKNVIDACA 119
+ Q + F + S + + V
Sbjct: 51 PVGPLA----ELLPQLDGSIDTAFCCLGTTIKEAGSEEAFRAVDF----DLPLAVGKRAL 102
Query: 120 ELKVKRLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANGTNGL 179
E+ + + S+ + + K + FY+ K E E + +
Sbjct: 103 EMGARHYLVVSA-----------LGAD------AKSSIFYNRVKGELEQALQEQGWPQ-- 143
Query: 180 LTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHA 232
RPS +FGP + L A ++ + G + + ++A A
Sbjct: 144 -LTIARPSLLFGPREEFR---LAEILAAPIARILPGKYHGI----EACDLARA 188
|
| >2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A Length = 315 | Back alignment and structure |
|---|
Score = 48.0 bits (115), Expect = 3e-06
Identities = 39/172 (22%), Positives = 57/172 (33%), Gaps = 39/172 (22%)
Query: 12 VTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDL 71
VTG G R + + +G R R + +L
Sbjct: 7 VTGATGLLGRAVHKEF--------------------QQNNWHAVGCGFRRARPKFEQVNL 46
Query: 72 RHKAQVLQALQGA--EVVFHMAA---PNSSINNHKLHHSVNVEGTKNVIDACAELKVKRL 126
V + V+ H AA P+ N +NV+ + N+ A + L
Sbjct: 47 LDSNAVHHIIHDFQPHVIVHCAAERRPDVVENQPDAASQLNVDASGNLAKEAAAVGAF-L 105
Query: 127 IYTSSPSVVFDGVHGIINGNEALPY----PPKHNDFYSATKAEGEALVIKAN 174
IY SS VFDG + PY P + Y TK +GE V++ N
Sbjct: 106 IYISS-DYVFDGTNP--------PYREEDIPAPLNLYGKTKLDGEKAVLENN 148
|
| >3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri} Length = 321 | Back alignment and structure |
|---|
Score = 46.9 bits (111), Expect = 9e-06
Identities = 35/278 (12%), Positives = 73/278 (26%), Gaps = 40/278 (14%)
Query: 11 VVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFD 70
++ GG G+ + +V + + I + P Q E RS + +
Sbjct: 8 IIYGGTGYIGKFMVRASLSFS-HPTFIYARPLTPDSTPSSVQLR--EEFRSMGVTIIEGE 64
Query: 71 LRHKAQVLQALQGAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTS 130
+ +++ L+ ++V + ++I+A + S
Sbjct: 65 MEEHEKMVSVLKQVDIVISALPFPM------------ISSQIHIINAIKAAGNIKRFLPS 112
Query: 131 SPSVVFDGVHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANGTNGLLTCCIRPSSIF 190
D + + P+ K + A L + +
Sbjct: 113 DFGCEEDRIKPLP------PFESVL-----EKKRIIRRAIEAA----ALPYTYVSANCFG 157
Query: 191 GPG-DRLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICAERALASEVTVAEK 249
+ LL PS I G G + Y ++A +
Sbjct: 158 AYFVNYLLHPSPHPNRN--DDIVIYGTGETKFVLNYEEDIA-------KYTIKVACDPRC 208
Query: 250 AAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPA 287
+ I E +SL G ++ +P
Sbjct: 209 CNRIVIYRPPKNIISQNELISLWEAKSGLSFKKVHMPD 246
|
| >2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D Length = 287 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 9e-06
Identities = 42/269 (15%), Positives = 80/269 (29%), Gaps = 56/269 (20%)
Query: 11 VVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFD 70
VTG G +++ L++ ++ S IA+ + E+ L D
Sbjct: 4 AVTGATGQLGGLVIQHLLK------KVPA-SQIIAIVRNVEKA---STLADQGVEVRHGD 53
Query: 71 LRHKAQVLQALQGAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTS 130
+ +A G + ++ P+ + H NV+ A + VK + YT
Sbjct: 54 YNQPESLQKAFAGVSKLLFISGPHYDNTLLIVQH-------ANVVKAARDAGVKHIAYTG 106
Query: 131 SPSVVFDGVHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANGTNGLLTCCIRPSSIF 190
+P H E + + +R +++
Sbjct: 107 YAFA----------EESIIPLAHVH--------LATEYAIRTT----NIPYTFLRN-ALY 143
Query: 191 GPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHI--CAERALASEVTVAE 248
D + L A+ +G G G V +V + A L E
Sbjct: 144 --TDFFVNEGLRASTESGAIVTNAGSG-------IVNSVTRNELALAAATVLTE-----E 189
Query: 249 KAAGQAYFVTNMESIKFWEFVSLILEGLG 277
+ Y + + + F E ++ E G
Sbjct: 190 GHENKTYNLVSNQPWTFDELAQILSEVSG 218
|
| >3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A* Length = 346 | Back alignment and structure |
|---|
Score = 45.0 bits (106), Expect = 3e-05
Identities = 35/277 (12%), Positives = 75/277 (27%), Gaps = 38/277 (13%)
Query: 11 VVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFD 70
++ G GF + + + I + + +AL A V
Sbjct: 14 LIAGATGFIGQFVATASLDAH-RPTYILARPGPRSPSKAKIF----KALEDKGAIIVYGL 68
Query: 71 LRHKAQVLQALQGAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTS 130
+ + + + L+ E+ ++ ++ ++ A + + S
Sbjct: 69 INEQEAMEKILKEHEIDIVVSTVGGE----------SILDQIALVKAMKAVGTIKRFLPS 118
Query: 131 SPSVVFDGVHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANGTNGLLTCCIRPSSIF 190
+ P + K L ++ +G CC +S
Sbjct: 119 EFGHDVNRAD-----------PVEPGLNMYREKRRVRQL-VEESGIPFTYICCNSIASWP 166
Query: 191 GPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICAERALASEVTVAEKA 250
+ PS V I GDGN F ++ + V
Sbjct: 167 YYN--NIHPSEVLPPT--DFFQIYGDGNVKAYFVAGTDIG-------KFTMKTVDDVRTL 215
Query: 251 AGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPA 287
+F + + E S+ + +G PR+ +
Sbjct: 216 NKSVHFRPSCNCLNINELASVWEKKIGRTLPRVTVTE 252
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} Length = 286 | Back alignment and structure |
|---|
Score = 44.5 bits (105), Expect = 4e-05
Identities = 46/301 (15%), Positives = 82/301 (27%), Gaps = 71/301 (23%)
Query: 57 EALRSGRAHYVSFDLRHKAQVLQALQGAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVID 116
EA+R+ A + + + L G + AP+ G V+
Sbjct: 42 EAIRASGAEPLLWPGEEPS-----LDGVTHLLISTAPD--------------SGGDPVLA 82
Query: 117 ACAEL------KVKRLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDFYSATKAEGEALV 170
A + + + + Y S+ +V D + +E P + E
Sbjct: 83 ALGDQIAARAAQFRWVGYLSTTAVYGDHDGAWV--DET--TPLTPTAARGRWRVMAEQQW 138
Query: 171 IKANGTNGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVA 230
R + I+GPG + G + II V +
Sbjct: 139 QAVPNLP---LHVFRLAGIYGPG-----RGPFSKLGKGGIRRIIKP-------GQVFSRI 183
Query: 231 HAHICAERALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVM 290
H A+ ++A G Y V + E + + ++ E G P
Sbjct: 184 HVEDIAQ---VLAASMARPDPGAVYNVCDDEPVPPQDVIAYAAELQGLPLPP-------- 232
Query: 291 MPIAHMVELTYRLLGPYGMKVPQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVP-LEEGI 349
LTP S ++ + K+ LG P G+
Sbjct: 233 ---------------AVDFDKADLTPMARSFYSENKRVRNDRIKEELGVRLKYPNYRVGL 277
Query: 350 K 350
+
Sbjct: 278 E 278
|
| >2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A* Length = 286 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 5e-05
Identities = 26/124 (20%), Positives = 49/124 (39%), Gaps = 19/124 (15%)
Query: 11 VVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFD 70
+TG G +++E L++ + S +A+ + + +AL + D
Sbjct: 3 AITGATGQLGHYVIESLMK------TVPA-SQIVAIVRNPAKA---QALAAQGITVRQAD 52
Query: 71 LRHKAQVLQALQGAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTS 130
+A + ALQG E + +++ + H +NVI+A VK + YTS
Sbjct: 53 YGDEAALTSALQGVEKLLLISSS--EVGQRAPQH-------RNVINAAKAAGVKFIAYTS 103
Query: 131 SPSV 134
Sbjct: 104 LLHA 107
|
| >2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A* Length = 318 | Back alignment and structure |
|---|
Score = 44.5 bits (105), Expect = 5e-05
Identities = 33/277 (11%), Positives = 80/277 (28%), Gaps = 46/277 (16%)
Query: 11 VVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFD 70
++ GG G+ H+V+ ++ + +S +E +S A V +
Sbjct: 15 LIFGGTGYIGNHMVKGSLKLG-HPTYVFTRPNSSKTTLLDE-------FQSLGAIIVKGE 66
Query: 71 LRHKAQVLQALQGAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTS 130
L ++++ ++ +VV A + +++A + S
Sbjct: 67 LDEHEKLVELMKKVDVVISALAFPQ------------ILDQFKILEAIKVAGNIKRFLPS 114
Query: 131 SPSVVFDGVHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANGTNGLLTCCIRPSSIF 190
V D ++ PP E + ++ +A + + +
Sbjct: 115 DFGVEEDRIN---------ALPPFE------ALIERKRMIRRAIEEANIPYTYVSANCFA 159
Query: 191 GPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICAERALASEVTVAEKA 250
+ L+ + G G + Y ++ T
Sbjct: 160 S----YFINYLLRPYDPKDEITVYGTGEAKFAMNYEQDIG-------LYTIKVATDPRAL 208
Query: 251 AGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPA 287
+ + I E +S + +G + +I +P
Sbjct: 209 NRVVIYRPSTNIITQLELISRWEKKIGKKFKKIHVPE 245
|
| >1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A* Length = 348 | Back alignment and structure |
|---|
Score = 44.4 bits (106), Expect = 5e-05
Identities = 73/386 (18%), Positives = 122/386 (31%), Gaps = 113/386 (29%)
Query: 12 VTGGRGFAARHLV-EMLIRYDMFSVRIADL------SDSIALEPHEEQGILGEALRSGRA 64
VTGG GF + V + + V + D ++ A+ R
Sbjct: 9 VTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKANLE------------AILGDRV 56
Query: 65 HYVSFDLRHKAQVLQALQGAEVVFHMAAPNS----SINNHKLHHSVNVEGTKNVIDACAE 120
V D+ V + A+ + H AA S S+N+ N GT +++A +
Sbjct: 57 ELVVGDIADAELVDKLAAKADAIVHYAA-ESHNDNSLNDPSPFIHTNFIGTYTLLEAARK 115
Query: 121 LKVK-----------RLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDFYSATKAEGEAL 169
++ L +G Y P + YS+TKA + +
Sbjct: 116 YDIRFHHVSTDEVYGDLPLREDLPGHGEGPGEKFT--AETNYNP--SSPYSSTKAASDLI 171
Query: 170 VIKANGTNGLLTCCIRPSSIFGP------GDRLLVPSLVAAARAGKSKFIIGDGNNVYDF 223
V + G+ S+ +GP +P + AG + G+G NV D+
Sbjct: 172 VKAWVRSFGVKATISNCSNNYGPYQHIEK----FIPRQITNILAGIKPKLYGEGKNVRDW 227
Query: 224 TYVANVAHAHICAERALASEVTVAEK-AAGQAYFV------TNMESIKFWEFVSLILEGL 276
+ + H+ + + K G+ Y + N E + LILE +
Sbjct: 228 IHTND--HS-----TGVW---AILTKGRMGETYLIGADGEKNNK------EVLELILEKM 271
Query: 277 GYQRPRIKIPAFVMMPIAHMVELTYRLLGP-----YGMKVPQLTPSRVRLLSCSRTFDCS 331
G + V T R Y + D S
Sbjct: 272 GQPKDAYD---HV----------TDR---AGHDLRYAI-------------------DAS 296
Query: 332 KAKDLLGYMPIV-PLEEGIKRTVDSY 356
K +D LG+ P EG++ T+ Y
Sbjct: 297 KLRDELGWTPQFTDFSEGLEETIQWY 322
|
| >1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2 Length = 292 | Back alignment and structure |
|---|
Score = 42.5 bits (101), Expect = 2e-04
Identities = 23/94 (24%), Positives = 35/94 (37%), Gaps = 17/94 (18%)
Query: 104 HSVNVEGTKNVIDACAELKVKRLIYTSSPSVVFDGVHGIINGNEALPY----PPKHNDFY 159
+ +N G KN+ A + + ++ S+ VFDG E P Y
Sbjct: 87 YKINAIGPKNLAAAAYSVGAE-IVQIST-DYVFDG-----EAKE--PITEFDEVNPQSAY 137
Query: 160 SATKAEGEALVIKANGTNGLLTCCIRPSSIFGPG 193
TK EGE V N +R + ++G G
Sbjct: 138 GKTKLEGENFVKALNPK----YYIVRTAWLYGDG 167
|
| >2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha, beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus tokodaii} Length = 273 | Back alignment and structure |
|---|
Score = 41.8 bits (99), Expect = 2e-04
Identities = 15/75 (20%), Positives = 32/75 (42%), Gaps = 14/75 (18%)
Query: 104 HSVNVEGTKNVIDACAELKVKRLIYTSSPSVVFDGVHGIINGNEALPY----PPKHNDFY 159
+ +N E ++++ A + +++ S+ VFDG G Y P ++Y
Sbjct: 81 YKINAEAVRHIVRAGKVIDSY-IVHIST-DYVFDGEKG--------NYKEEDIPNPINYY 130
Query: 160 SATKAEGEALVIKAN 174
+K GE ++ +
Sbjct: 131 GLSKLLGETFALQDD 145
|
| >1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A* Length = 352 | Back alignment and structure |
|---|
Score = 42.1 bits (99), Expect = 3e-04
Identities = 45/334 (13%), Positives = 93/334 (27%), Gaps = 68/334 (20%)
Query: 1 MSGEENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIA--DLSDSIALEPHEEQGILGEA 58
M+ + ++ V G G L+ + VR L IA E
Sbjct: 1 MA--QQKKTIAVVGATGRQGASLIRVAAA-VGHHVRAQVHSLKGLIAEELQAIPN----- 52
Query: 59 LRSGRAHYVSFDLRHKAQVL-QALQGAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDA 117
L + ++ +GA + F S + K++ DA
Sbjct: 53 -----VTLFQGPLLNNVPLMDTLFEGAHLAFIN--TTSQAGDEIAIG-------KDLADA 98
Query: 118 CAEL-KVKRLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANGT 176
++ IY+S P Y P A K E ++ G
Sbjct: 99 AKRAGTIQHYIYSSMPD--------------HSLYGPWPAVPMWAPKFTVENY-VRQLGL 143
Query: 177 NGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICA 236
PS+ G + + + ++ DG + + ++ + A
Sbjct: 144 ---------PSTFVYAG--IYNNNFTSLPYPLFQMELMPDGTFEWHAPFDPDIPLPWLDA 192
Query: 237 ERALASEVTVA-----EKAAGQAYFVTNMESIKFWEFVSLILEGLG----YQRP-----R 282
E + + +K G +T E++ + + L Y + +
Sbjct: 193 EHDVGPALLQIFKDGPQKWNGHRIALTF-ETLSPVQVCAAFSRALNRRVTYVQVPKVEIK 251
Query: 283 IKIPAFVMMPIAHMVELTYRLLGPYGMKVPQLTP 316
+ IP + + + + +P+ +
Sbjct: 252 VNIPVGYREQLEAIEVV-FGEHKAPYFPLPEFSR 284
|
| >1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A* Length = 348 | Back alignment and structure |
|---|
Score = 41.3 bits (98), Expect = 4e-04
Identities = 26/129 (20%), Positives = 52/129 (40%), Gaps = 6/129 (4%)
Query: 12 VTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILG-EALRSGRAHYVSFD 70
VTGG G+ H V L+ V I + ++ + + + L + D
Sbjct: 7 VTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFEEMD 66
Query: 71 LRHKAQVLQALQGAEV--VFHMAAPNS---SINNHKLHHSVNVEGTKNVIDACAELKVKR 125
+ + + + + V H A + S+ ++ VN+ GT +++ VK
Sbjct: 67 ILDQGALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHGVKN 126
Query: 126 LIYTSSPSV 134
L+++SS +V
Sbjct: 127 LVFSSSATV 135
|
| >1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A* Length = 397 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 5e-04
Identities = 30/139 (21%), Positives = 49/139 (35%), Gaps = 20/139 (14%)
Query: 12 VTGGRGFAARHLVEMLIRYDMFSVRIAD-LSDS-----------IALEPHEEQGILGEAL 59
V GG G+ H V L+R SV I D L + ++
Sbjct: 7 VCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPW 66
Query: 60 RSGRAHYVSFDLRHKA---QVLQALQGAEVVFHMAAPNS----SINNHKLHHSVNVEGTK 112
A D+R++ V + V HM A S+ + ++ NV G
Sbjct: 67 ADRYAALEVGDVRNEDFLNGVFTRHGPIDAVVHMCA-FLAVGESVRDPLKYYDNNVVGIL 125
Query: 113 NVIDACAELKVKRLIYTSS 131
++ A K ++I++SS
Sbjct: 126 RLLQAMLLHKCDKIIFSSS 144
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 485 | |||
| 3ruf_A | 351 | WBGU; rossmann fold, UDP-hexose 4-epimerase, isome | 100.0 | |
| 3m2p_A | 311 | UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J | 100.0 | |
| 4egb_A | 346 | DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce | 100.0 | |
| 4id9_A | 347 | Short-chain dehydrogenase/reductase; putative dehy | 100.0 | |
| 3slg_A | 372 | PBGP3 protein; structural genomics, seattle struct | 100.0 | |
| 2x4g_A | 342 | Nucleoside-diphosphate-sugar epimerase; isomerase; | 100.0 | |
| 3ehe_A | 313 | UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, | 100.0 | |
| 3ko8_A | 312 | NAD-dependent epimerase/dehydratase; isomerase, UD | 100.0 | |
| 3enk_A | 341 | UDP-glucose 4-epimerase; seattle structural genomi | 100.0 | |
| 4b8w_A | 319 | GDP-L-fucose synthase; oxidoreductase; HET: NAP GD | 100.0 | |
| 3sxp_A | 362 | ADP-L-glycero-D-mannoheptose-6-epimerase; rossman | 100.0 | |
| 2c5a_A | 379 | GDP-mannose-3', 5'-epimerase; short chain dehydrat | 100.0 | |
| 2c20_A | 330 | UDP-glucose 4-epimerase; carbohydrate metabolism, | 100.0 | |
| 1sb8_A | 352 | WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN | 100.0 | |
| 2pk3_A | 321 | GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor | 100.0 | |
| 2hun_A | 336 | 336AA long hypothetical DTDP-glucose 4,6-dehydrat; | 100.0 | |
| 1ek6_A | 348 | UDP-galactose 4-epimerase; short-chain dehydrogena | 100.0 | |
| 2p5y_A | 311 | UDP-glucose 4-epimerase; TTHA0591, structural geno | 100.0 | |
| 2q1s_A | 377 | Putative nucleotide sugar epimerase/ dehydratase; | 100.0 | |
| 1e6u_A | 321 | GDP-fucose synthetase; epimerase/reductase, SDR, R | 100.0 | |
| 3vps_A | 321 | TUNA, NAD-dependent epimerase/dehydratase; tunicam | 100.0 | |
| 1r6d_A | 337 | TDP-glucose-4,6-dehydratase; rossmann fold, short- | 100.0 | |
| 1oc2_A | 348 | DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnos | 100.0 | |
| 2bll_A | 345 | Protein YFBG; decarboxylase, short chain dehydroge | 100.0 | |
| 1rpn_A | 335 | GDP-mannose 4,6-dehydratase; short-chain dehydroge | 100.0 | |
| 1orr_A | 347 | CDP-tyvelose-2-epimerase; rossmann fold, short-cha | 100.0 | |
| 1i24_A | 404 | Sulfolipid biosynthesis protein SQD1; SDR, short-c | 100.0 | |
| 2b69_A | 343 | UDP-glucuronate decarboxylase 1; UDP-glucoronic ac | 100.0 | |
| 1rkx_A | 357 | CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; | 100.0 | |
| 1gy8_A | 397 | UDP-galactose 4-epimerase; oxidoreductase; HET: NA | 100.0 | |
| 1udb_A | 338 | Epimerase, UDP-galactose-4-epimerase; isomerase; H | 100.0 | |
| 1kew_A | 361 | RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fo | 100.0 | |
| 2yy7_A | 312 | L-threonine dehydrogenase; thermolabIle, flavobact | 100.0 | |
| 2x6t_A | 357 | ADP-L-glycero-D-manno-heptose-6-epimerase; isomera | 100.0 | |
| 1eq2_A | 310 | ADP-L-glycero-D-mannoheptose 6-epimerase; N-termin | 100.0 | |
| 3sc6_A | 287 | DTDP-4-dehydrorhamnose reductase; RFBD, structural | 100.0 | |
| 3gpi_A | 286 | NAD-dependent epimerase/dehydratase; structural ge | 100.0 | |
| 1n2s_A | 299 | DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold | 100.0 | |
| 2v6g_A | 364 | Progesterone 5-beta-reductase; tyrosine-dependent | 100.0 | |
| 1t2a_A | 375 | GDP-mannose 4,6 dehydratase; structural genomics c | 100.0 | |
| 1db3_A | 372 | GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lya | 100.0 | |
| 2z1m_A | 345 | GDP-D-mannose dehydratase; short-chain dehydrogena | 100.0 | |
| 2pzm_A | 330 | Putative nucleotide sugar epimerase/ dehydratase; | 100.0 | |
| 3ajr_A | 317 | NDP-sugar epimerase; L-threonine dehydrogenase, L- | 100.0 | |
| 2q1w_A | 333 | Putative nucleotide sugar epimerase/ dehydratase; | 100.0 | |
| 1vl0_A | 292 | DTDP-4-dehydrorhamnose reductase, RFBD ortholog; s | 100.0 | |
| 1n7h_A | 381 | GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, | 100.0 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 100.0 | |
| 2hrz_A | 342 | AGR_C_4963P, nucleoside-diphosphate-sugar epimeras | 100.0 | |
| 1z45_A | 699 | GAL10 bifunctional protein; epimerase, mutarotase, | 100.0 | |
| 1z7e_A | 660 | Protein aRNA; rossmann fold, OB-like fold, hydrola | 100.0 | |
| 2ydy_A | 315 | Methionine adenosyltransferase 2 subunit beta; oxi | 100.0 | |
| 1y1p_A | 342 | ARII, aldehyde reductase II; rossmann fold, short | 100.0 | |
| 2p4h_X | 322 | Vestitone reductase; NADPH-dependent reductase, is | 100.0 | |
| 2c29_D | 337 | Dihydroflavonol 4-reductase; flavonoids, short deh | 100.0 | |
| 2rh8_A | 338 | Anthocyanidin reductase; flavonoids, rossmann fold | 100.0 | |
| 4b4o_A | 298 | Epimerase family protein SDR39U1; isomerase; HET: | 100.0 | |
| 4f6c_A | 427 | AUSA reductase domain protein; thioester reductase | 100.0 | |
| 2jl1_A | 287 | Triphenylmethane reductase; oxidoreductase, biorem | 100.0 | |
| 4f6l_B | 508 | AUSA reductase domain protein; thioester reductase | 100.0 | |
| 2zcu_A | 286 | Uncharacterized oxidoreductase YTFG; alpha-beta sa | 100.0 | |
| 3oh8_A | 516 | Nucleoside-diphosphate sugar epimerase (SULA FAMI; | 100.0 | |
| 2ggs_A | 273 | 273AA long hypothetical DTDP-4-dehydrorhamnose red | 100.0 | |
| 4dqv_A | 478 | Probable peptide synthetase NRP (peptide synthase; | 100.0 | |
| 2gn4_A | 344 | FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann | 100.0 | |
| 3dhn_A | 227 | NAD-dependent epimerase/dehydratase; reductase, PF | 100.0 | |
| 3i6i_A | 346 | Putative leucoanthocyanidin reductase 1; rossmann | 100.0 | |
| 3nzo_A | 399 | UDP-N-acetylglucosamine 4,6-dehydratase; structura | 99.98 | |
| 3ay3_A | 267 | NAD-dependent epimerase/dehydratase; glucuronic ac | 99.98 | |
| 3st7_A | 369 | Capsular polysaccharide synthesis enzyme CAP5F; ro | 99.98 | |
| 3e48_A | 289 | Putative nucleoside-diphosphate-sugar epimerase; a | 99.97 | |
| 3rft_A | 267 | Uronate dehydrogenase; apoenzyme, rossmann fold, N | 99.97 | |
| 3dqp_A | 219 | Oxidoreductase YLBE; alpha-beta protein., structur | 99.97 | |
| 2wm3_A | 299 | NMRA-like family domain containing protein 1; unkn | 99.97 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 99.97 | |
| 1xgk_A | 352 | Nitrogen metabolite repression regulator NMRA; ros | 99.96 | |
| 3ew7_A | 221 | LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend | 99.96 | |
| 3h2s_A | 224 | Putative NADH-flavin reductase; Q03B84, NESG, LCR1 | 99.96 | |
| 1xq6_A | 253 | Unknown protein; structural genomics, protein stru | 99.96 | |
| 2r6j_A | 318 | Eugenol synthase 1; phenylpropene, PIP reductase, | 99.96 | |
| 1qyd_A | 313 | Pinoresinol-lariciresinol reductase; NADPH-depende | 99.96 | |
| 3c1o_A | 321 | Eugenol synthase; phenylpropene, PIP reductase, sh | 99.95 | |
| 2a35_A | 215 | Hypothetical protein PA4017; alpha-beta-alpha sand | 99.95 | |
| 1hdo_A | 206 | Biliverdin IX beta reductase; foetal metabolism, H | 99.95 | |
| 2gas_A | 307 | Isoflavone reductase; NADPH-dependent reductase, o | 99.94 | |
| 1qyc_A | 308 | Phenylcoumaran benzylic ether reductase PT1; NADPH | 99.94 | |
| 2bka_A | 242 | CC3, TAT-interacting protein TIP30; NADPH, PEG600, | 99.94 | |
| 2dkn_A | 255 | 3-alpha-hydroxysteroid dehydrogenase; oxidoreducta | 99.93 | |
| 2bgk_A | 278 | Rhizome secoisolariciresinol dehydrogenase; oxidor | 99.92 | |
| 1cyd_A | 244 | Carbonyl reductase; short-chain dehydrogenase, oxi | 99.92 | |
| 3m1a_A | 281 | Putative dehydrogenase; short, PSI, MCSG, structur | 99.91 | |
| 3qvo_A | 236 | NMRA family protein; structural genomics, PSI-biol | 99.91 | |
| 1fmc_A | 255 | 7 alpha-hydroxysteroid dehydrogenase; short-chain | 99.91 | |
| 2pd6_A | 264 | Estradiol 17-beta-dehydrogenase 8; short-chain deh | 99.91 | |
| 4e6p_A | 259 | Probable sorbitol dehydrogenase (L-iditol 2-dehyd; | 99.9 | |
| 2pnf_A | 248 | 3-oxoacyl-[acyl-carrier-protein] reductase; short | 99.9 | |
| 3d3w_A | 244 | L-xylulose reductase; uronate cycle, short-chain d | 99.9 | |
| 1uay_A | 242 | Type II 3-hydroxyacyl-COA dehydrogenase; beta oxid | 99.9 | |
| 3r6d_A | 221 | NAD-dependent epimerase/dehydratase; structural ge | 99.9 | |
| 3ai3_A | 263 | NADPH-sorbose reductase; rossmann-fold, NADPH-depe | 99.89 | |
| 3afn_B | 258 | Carbonyl reductase; alpha/beta/alpha, rossmann-fol | 99.89 | |
| 3awd_A | 260 | GOX2181, putative polyol dehydrogenase; oxidoreduc | 99.89 | |
| 1spx_A | 278 | Short-chain reductase family member (5L265); paral | 99.89 | |
| 3d7l_A | 202 | LIN1944 protein; APC89317, structural genomics, PS | 99.89 | |
| 3un1_A | 260 | Probable oxidoreductase; structural genomics, PSI- | 99.89 | |
| 3osu_A | 246 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.89 | |
| 1w6u_A | 302 | 2,4-dienoyl-COA reductase, mitochondrial precursor | 99.89 | |
| 3svt_A | 281 | Short-chain type dehydrogenase/reductase; ssgcid, | 99.89 | |
| 3tpc_A | 257 | Short chain alcohol dehydrogenase-related dehydro; | 99.89 | |
| 1nff_A | 260 | Putative oxidoreductase RV2002; directed evolution | 99.89 | |
| 3tzq_B | 271 | Short-chain type dehydrogenase/reductase; ssgcid, | 99.88 | |
| 2hq1_A | 247 | Glucose/ribitol dehydrogenase; CTH-1438, structura | 99.88 | |
| 2cfc_A | 250 | 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor | 99.88 | |
| 3v2h_A | 281 | D-beta-hydroxybutyrate dehydrogenase; structural g | 99.88 | |
| 2yut_A | 207 | Putative short-chain oxidoreductase; alpha and bet | 99.88 | |
| 1xq1_A | 266 | Putative tropinone reducatse; structural genomics, | 99.88 | |
| 1gee_A | 261 | Glucose 1-dehydrogenase; short-chain dehydrogenase | 99.88 | |
| 1ja9_A | 274 | 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p | 99.88 | |
| 2wsb_A | 254 | Galactitol dehydrogenase; oxidoreductase, SDR, ros | 99.88 | |
| 2ph3_A | 245 | 3-oxoacyl-[acyl carrier protein] reductase; TTHA04 | 99.88 | |
| 3i4f_A | 264 | 3-oxoacyl-[acyl-carrier protein] reductase; struct | 99.88 | |
| 1zk4_A | 251 | R-specific alcohol dehydrogenase; short chain redu | 99.87 | |
| 3f9i_A | 249 | 3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto | 99.87 | |
| 1edo_A | 244 | Beta-keto acyl carrier protein reductase; nucleoti | 99.87 | |
| 2fwm_X | 250 | 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; e | 99.87 | |
| 3pk0_A | 262 | Short-chain dehydrogenase/reductase SDR; ssgcid, s | 99.87 | |
| 3s55_A | 281 | Putative short-chain dehydrogenase/reductase; stru | 99.87 | |
| 2z1n_A | 260 | Dehydrogenase; reductase, SDR, oxidoreductase; 1.8 | 99.87 | |
| 2ae2_A | 260 | Protein (tropinone reductase-II); oxidoreductase, | 99.87 | |
| 3ak4_A | 263 | NADH-dependent quinuclidinone reductase; SDR, (R)- | 99.87 | |
| 1h5q_A | 265 | NADP-dependent mannitol dehydrogenase; oxidoreduct | 99.87 | |
| 3rih_A | 293 | Short chain dehydrogenase or reductase; structural | 99.87 | |
| 2ew8_A | 249 | (S)-1-phenylethanol dehydrogenase; transferase; 2. | 99.87 | |
| 1mxh_A | 276 | Pteridine reductase 2; SDR topology, protein-subst | 99.87 | |
| 2d1y_A | 256 | Hypothetical protein TT0321; strucrtural genomics, | 99.87 | |
| 2o23_A | 265 | HADH2 protein; HSD17B10, schad, ERAB, type II HADH | 99.87 | |
| 2c07_A | 285 | 3-oxoacyl-(acyl-carrier protein) reductase; oxidor | 99.87 | |
| 3gaf_A | 256 | 7-alpha-hydroxysteroid dehydrogenase; seattle stru | 99.86 | |
| 3ftp_A | 270 | 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid | 99.86 | |
| 2q2v_A | 255 | Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore | 99.86 | |
| 3lyl_A | 247 | 3-oxoacyl-(acyl-carrier-protein) reductase; alpha | 99.86 | |
| 2wyu_A | 261 | Enoyl-[acyl carrier protein] reductase; oxidoreduc | 99.86 | |
| 2gdz_A | 267 | NAD+-dependent 15-hydroxyprostaglandin dehydrogen; | 99.86 | |
| 2zat_A | 260 | Dehydrogenase/reductase SDR family member 4; alpha | 99.86 | |
| 3ucx_A | 264 | Short chain dehydrogenase; ssgcid, seattle structu | 99.86 | |
| 3qiv_A | 253 | Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR | 99.86 | |
| 3pgx_A | 280 | Carveol dehydrogenase; structural genomics, seattl | 99.86 | |
| 2rhc_B | 277 | Actinorhodin polyketide ketoreductase; oxidoreduct | 99.86 | |
| 1qsg_A | 265 | Enoyl-[acyl-carrier-protein] reductase; enoyl redu | 99.86 | |
| 1hdc_A | 254 | 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi | 99.86 | |
| 2dtx_A | 264 | Glucose 1-dehydrogenase related protein; rossmann | 99.86 | |
| 3imf_A | 257 | Short chain dehydrogenase; structural genomics, in | 99.86 | |
| 1ae1_A | 273 | Tropinone reductase-I; oxidoreductase, tropane alk | 99.86 | |
| 1x1t_A | 260 | D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S | 99.86 | |
| 3op4_A | 248 | 3-oxoacyl-[acyl-carrier protein] reductase; 3-keto | 99.86 | |
| 4da9_A | 280 | Short-chain dehydrogenase/reductase; structural ge | 99.86 | |
| 3uxy_A | 266 | Short-chain dehydrogenase/reductase SDR; structura | 99.85 | |
| 4dmm_A | 269 | 3-oxoacyl-[acyl-carrier-protein] reductase; rossma | 99.85 | |
| 3gem_A | 260 | Short chain dehydrogenase; structural genomics, AP | 99.85 | |
| 3ijr_A | 291 | Oxidoreductase, short chain dehydrogenase/reducta; | 99.85 | |
| 2ag5_A | 246 | DHRS6, dehydrogenase/reductase (SDR family) member | 99.85 | |
| 3qlj_A | 322 | Short chain dehydrogenase; structural genomics, se | 99.85 | |
| 3p19_A | 266 | BFPVVD8, putative blue fluorescent protein; rossma | 99.85 | |
| 3ctm_A | 279 | Carbonyl reductase; alcohol dehydrogenase, short-c | 99.85 | |
| 3grp_A | 266 | 3-oxoacyl-(acyl carrierprotein) reductase; structu | 99.85 | |
| 3o38_A | 266 | Short chain dehydrogenase; tuberculosis, ortholog | 99.85 | |
| 2bd0_A | 244 | Sepiapterin reductase; oxidoreductase; HET: NAP BI | 99.85 | |
| 3uf0_A | 273 | Short-chain dehydrogenase/reductase SDR; gluconate | 99.85 | |
| 4dqx_A | 277 | Probable oxidoreductase protein; structural genomi | 99.85 | |
| 3sx2_A | 278 | Putative 3-ketoacyl-(acyl-carrier-protein) reduct; | 99.85 | |
| 2uvd_A | 246 | 3-oxoacyl-(acyl-carrier-protein) reductase; beta-k | 99.85 | |
| 4e3z_A | 272 | Putative oxidoreductase protein; PSI-biology, stru | 99.85 | |
| 1iy8_A | 267 | Levodione reductase; oxidoreductase; HET: NAD; 1.6 | 99.85 | |
| 1yxm_A | 303 | Pecra, peroxisomal trans 2-enoyl COA reductase; pe | 99.85 | |
| 1o5i_A | 249 | 3-oxoacyl-(acyl carrier protein) reductase; TM1169 | 99.85 | |
| 1fjh_A | 257 | 3alpha-hydroxysteroid dehydrogenase/carbonyl reduc | 99.85 | |
| 3rd5_A | 291 | Mypaa.01249.C; ssgcid, structural genomics, seattl | 99.85 | |
| 3ezl_A | 256 | Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA | 99.85 | |
| 1uzm_A | 247 | 3-oxoacyl-[acyl-carrier protein] reductase; beta-k | 99.85 | |
| 3gvc_A | 277 | Oxidoreductase, probable short-chain type dehydrog | 99.85 | |
| 4e4y_A | 244 | Short chain dehydrogenase family protein; structur | 99.85 | |
| 3vtz_A | 269 | Glucose 1-dehydrogenase; rossmann fold, oxidoreduc | 99.84 | |
| 1yo6_A | 250 | Putative carbonyl reductase sniffer; tyrosine-depe | 99.84 | |
| 3t4x_A | 267 | Oxidoreductase, short chain dehydrogenase/reducta; | 99.84 | |
| 2p91_A | 285 | Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD | 99.84 | |
| 3n74_A | 261 | 3-ketoacyl-(acyl-carrier-protein) reductase; seatt | 99.84 | |
| 3r3s_A | 294 | Oxidoreductase; structural genomics, csgid, center | 99.84 | |
| 1hxh_A | 253 | 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b | 99.84 | |
| 4iiu_A | 267 | 3-oxoacyl-[acyl-carrier protein] reductase; struct | 99.84 | |
| 3tl3_A | 257 | Short-chain type dehydrogenase/reductase; ssgcid, | 99.84 | |
| 2b4q_A | 276 | Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier | 99.84 | |
| 1vl8_A | 267 | Gluconate 5-dehydrogenase; TM0441, structural geno | 99.84 | |
| 1uls_A | 245 | Putative 3-oxoacyl-acyl carrier protein reductase; | 99.84 | |
| 4eso_A | 255 | Putative oxidoreductase; NADP, structural genomics | 99.84 | |
| 1sby_A | 254 | Alcohol dehydrogenase; ternary complex, NAD, trifl | 99.84 | |
| 3tox_A | 280 | Short chain dehydrogenase; structural genomics, PS | 99.84 | |
| 3dii_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 99.84 | |
| 3a28_C | 258 | L-2.3-butanediol dehydrogenase; chiral substrate r | 99.84 | |
| 3oid_A | 258 | Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa | 99.84 | |
| 4iin_A | 271 | 3-ketoacyl-acyl carrier protein reductase (FABG); | 99.84 | |
| 3pxx_A | 287 | Carveol dehydrogenase; structural genomics, seattl | 99.83 | |
| 1xhl_A | 297 | Short-chain dehydrogenase/reductase family member | 99.83 | |
| 3oig_A | 266 | Enoyl-[acyl-carrier-protein] reductase [NADH]; fat | 99.83 | |
| 2ekp_A | 239 | 2-deoxy-D-gluconate 3-dehydrogenase; structural ge | 99.83 | |
| 3sju_A | 279 | Keto reductase; short-chain dehydrogenase, oxidore | 99.83 | |
| 3edm_A | 259 | Short chain dehydrogenase; structural genomics, ox | 99.83 | |
| 2ehd_A | 234 | Oxidoreductase, oxidoreductase, short-chain dehydr | 99.83 | |
| 2nm0_A | 253 | Probable 3-oxacyl-(acyl-carrier-protein) reductas; | 99.83 | |
| 1geg_A | 256 | Acetoin reductase; SDR family, oxidoreductase; HET | 99.83 | |
| 3uce_A | 223 | Dehydrogenase; rossmann fold, oxidoreductase; HET: | 99.83 | |
| 3cxt_A | 291 | Dehydrogenase with different specificities; rossma | 99.83 | |
| 4ibo_A | 271 | Gluconate dehydrogenase; enzyme function initiativ | 99.83 | |
| 1xkq_A | 280 | Short-chain reductase family member (5D234); parra | 99.83 | |
| 3orf_A | 251 | Dihydropteridine reductase; alpha-beta-alpha sandw | 99.83 | |
| 1yde_A | 270 | Retinal dehydrogenase/reductase 3; oxidoreductase, | 99.83 | |
| 4fc7_A | 277 | Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman | 99.83 | |
| 3tjr_A | 301 | Short chain dehydrogenase; structural genomics, se | 99.83 | |
| 3uve_A | 286 | Carveol dehydrogenase ((+)-trans-carveol dehydrog; | 99.83 | |
| 3t7c_A | 299 | Carveol dehydrogenase; structural genomics, seattl | 99.83 | |
| 3tsc_A | 277 | Putative oxidoreductase; structural genomics, seat | 99.82 | |
| 2a4k_A | 263 | 3-oxoacyl-[acyl carrier protein] reductase; reduct | 99.82 | |
| 3gk3_A | 269 | Acetoacetyl-COA reductase; acetoacetyl-CO reductas | 99.82 | |
| 1dhr_A | 241 | Dihydropteridine reductase; oxidoreductase(acting | 99.82 | |
| 3rwb_A | 247 | TPLDH, pyridoxal 4-dehydrogenase; short chain dehy | 99.82 | |
| 3u9l_A | 324 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.82 | |
| 3h7a_A | 252 | Short chain dehydrogenase; oxidoreductase, PSI-2, | 99.82 | |
| 3is3_A | 270 | 17BETA-hydroxysteroid dehydrogenase; short chain d | 99.82 | |
| 1xg5_A | 279 | ARPG836; short chain dehydrogenase, human, SGC, st | 99.82 | |
| 3lf2_A | 265 | Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross | 99.82 | |
| 1ooe_A | 236 | Dihydropteridine reductase; structural genomics, P | 99.82 | |
| 3ek2_A | 271 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 99.82 | |
| 3ppi_A | 281 | 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de | 99.82 | |
| 3rku_A | 287 | Oxidoreductase YMR226C; substrate fingerprint, sho | 99.82 | |
| 4egf_A | 266 | L-xylulose reductase; structural genomics, ssgcid, | 99.82 | |
| 1zem_A | 262 | Xylitol dehydrogenase; rossmann fold, dinucleotide | 99.81 | |
| 3v2g_A | 271 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.81 | |
| 3v8b_A | 283 | Putative dehydrogenase, possibly 3-oxoacyl-[acyl- | 99.81 | |
| 2pd4_A | 275 | Enoyl-[acyl-carrier-protein] reductase [NADH]; ant | 99.81 | |
| 3k31_A | 296 | Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI | 99.81 | |
| 3r1i_A | 276 | Short-chain type dehydrogenase/reductase; structur | 99.81 | |
| 1sny_A | 267 | Sniffer CG10964-PA; alpha and beta protein, rossma | 99.81 | |
| 1g0o_A | 283 | Trihydroxynaphthalene reductase; protein-NADPH-act | 99.81 | |
| 3f1l_A | 252 | Uncharacterized oxidoreductase YCIK; E. coli, NADP | 99.81 | |
| 3nrc_A | 280 | Enoyl-[acyl-carrier-protein] reductase (NADH); ros | 99.81 | |
| 3grk_A | 293 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 99.81 | |
| 1yb1_A | 272 | 17-beta-hydroxysteroid dehydrogenase type XI; shor | 99.81 | |
| 3ioy_A | 319 | Short-chain dehydrogenase/reductase SDR; structura | 99.81 | |
| 1wma_A | 276 | Carbonyl reductase [NADPH] 1; oxidoreductase; HET: | 99.81 | |
| 3oec_A | 317 | Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; | 99.81 | |
| 3kzv_A | 254 | Uncharacterized oxidoreductase YIR035C; cytoplasmi | 99.81 | |
| 3rkr_A | 262 | Short chain oxidoreductase; rossmann fold; HET: NA | 99.81 | |
| 2jah_A | 247 | Clavulanic acid dehydrogenase; short-chain dehydro | 99.8 | |
| 3ksu_A | 262 | 3-oxoacyl-acyl carrier protein reductase; structur | 99.8 | |
| 2x9g_A | 288 | PTR1, pteridine reductase; short chain dehydrogena | 99.8 | |
| 2qhx_A | 328 | Pteridine reductase 1; oxidoreductase, short-chain | 99.8 | |
| 3u5t_A | 267 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.8 | |
| 4imr_A | 275 | 3-oxoacyl-(acyl-carrier-protein) reductase; oxidor | 99.8 | |
| 3nyw_A | 250 | Putative oxidoreductase; fatty acid synthesis,3-ox | 99.79 | |
| 3tfo_A | 264 | Putative 3-oxoacyl-(acyl-carrier-protein) reducta; | 99.79 | |
| 3gdg_A | 267 | Probable NADP-dependent mannitol dehydrogenase; ro | 99.79 | |
| 3l77_A | 235 | Short-chain alcohol dehydrogenase; oxidoreductase; | 99.79 | |
| 4dyv_A | 272 | Short-chain dehydrogenase/reductase SDR; structura | 99.79 | |
| 3asu_A | 248 | Short-chain dehydrogenase/reductase SDR; SDR famil | 99.79 | |
| 3icc_A | 255 | Putative 3-oxoacyl-(acyl carrier protein) reducta; | 99.78 | |
| 1e7w_A | 291 | Pteridine reductase; dihydrofolate reductase, shor | 99.78 | |
| 3guy_A | 230 | Short-chain dehydrogenase/reductase SDR; structura | 99.78 | |
| 1y7t_A | 327 | Malate dehydrogenase; NAD-dependent-MDH-NADPH comp | 99.77 | |
| 3sc4_A | 285 | Short chain dehydrogenase (A0QTM2 homolog); ssgcid | 99.77 | |
| 2nwq_A | 272 | Probable short-chain dehydrogenase; oxidoreductase | 99.77 | |
| 3l6e_A | 235 | Oxidoreductase, short-chain dehydrogenase/reducta; | 99.77 | |
| 3kvo_A | 346 | Hydroxysteroid dehydrogenase-like protein 2; HSDL2 | 99.77 | |
| 3e9n_A | 245 | Putative short-chain dehydrogenase/reductase; stru | 99.76 | |
| 3i1j_A | 247 | Oxidoreductase, short chain dehydrogenase/reducta; | 99.76 | |
| 1xu9_A | 286 | Corticosteroid 11-beta-dehydrogenase, isozyme 1; h | 99.75 | |
| 1zmt_A | 254 | Haloalcohol dehalogenase HHEC; halohydrin dehaloge | 99.75 | |
| 2h7i_A | 269 | Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi | 99.75 | |
| 3zv4_A | 281 | CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox | 99.75 | |
| 4dry_A | 281 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.75 | |
| 3e03_A | 274 | Short chain dehydrogenase; structural genomics, PS | 99.74 | |
| 1oaa_A | 259 | Sepiapterin reductase; tetrahydrobiopterin, oxidor | 99.73 | |
| 2fr1_A | 486 | Erythromycin synthase, eryai; short chain dehydrog | 99.73 | |
| 4b79_A | 242 | PA4098, probable short-chain dehydrogenase; oxidor | 99.73 | |
| 3ged_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 99.73 | |
| 2z5l_A | 511 | Tylkr1, tylactone synthase starter module and modu | 99.72 | |
| 3u0b_A | 454 | Oxidoreductase, short chain dehydrogenase/reducta | 99.72 | |
| 4fgs_A | 273 | Probable dehydrogenase protein; PSI-biology, nysgr | 99.72 | |
| 4g81_D | 255 | Putative hexonate dehydrogenase; enzyme function i | 99.7 | |
| 1jtv_A | 327 | 17 beta-hydroxysteroid dehydrogenase type 1; stero | 99.7 | |
| 3o26_A | 311 | Salutaridine reductase; short chain dehydrogenase/ | 99.7 | |
| 2qq5_A | 260 | DHRS1, dehydrogenase/reductase SDR family member 1 | 99.7 | |
| 1gz6_A | 319 | Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MF | 99.68 | |
| 4gkb_A | 258 | 3-oxoacyl-[acyl-carrier protein] reductase; putati | 99.68 | |
| 4fn4_A | 254 | Short chain dehydrogenase; NADH-binding, rossmann | 99.68 | |
| 1zmo_A | 244 | Halohydrin dehalogenase; haloalcohol dehalogenase, | 99.67 | |
| 4fs3_A | 256 | Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; | 99.66 | |
| 1d7o_A | 297 | Enoyl-[acyl-carrier protein] reductase (NADH) PRE; | 99.66 | |
| 4h15_A | 261 | Short chain alcohol dehydrogenase-related dehydro; | 99.65 | |
| 4hp8_A | 247 | 2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi | 99.65 | |
| 3mje_A | 496 | AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1. | 99.61 | |
| 3qp9_A | 525 | Type I polyketide synthase pikaii; rossmann fold, | 99.58 | |
| 2o2s_A | 315 | Enoyl-acyl carrier reductase; enoyl reductase, tri | 99.55 | |
| 3oml_A | 613 | GH14720P, peroxisomal multifunctional enzyme type | 99.52 | |
| 2ptg_A | 319 | Enoyl-acyl carrier reductase; apicomplexa, enoyl ( | 99.52 | |
| 3lt0_A | 329 | Enoyl-ACP reductase; triclosan, triclosan variant, | 99.44 | |
| 2uv9_A | 1878 | Fatty acid synthase alpha subunits; fungal, dehydr | 99.35 | |
| 2uv8_A | 1887 | Fatty acid synthase subunit alpha (FAS2); fatty ac | 99.27 | |
| 2pff_A | 1688 | Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl | 99.27 | |
| 2et6_A | 604 | (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox | 99.22 | |
| 3slk_A | 795 | Polyketide synthase extender module 2; rossmann fo | 99.22 | |
| 2et6_A | 604 | (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox | 99.21 | |
| 3zu3_A | 405 | Putative reductase YPO4104/Y4119/YP_4011; oxidored | 99.17 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 99.15 | |
| 3s8m_A | 422 | Enoyl-ACP reductase; rossmann fold, oxidoreductase | 99.13 | |
| 4eue_A | 418 | Putative reductase CA_C0462; TER, biofuel, synthet | 99.11 | |
| 1b8p_A | 329 | Protein (malate dehydrogenase); oxidoreductase; 1. | 99.08 | |
| 1smk_A | 326 | Malate dehydrogenase, glyoxysomal; tricarboxylic c | 98.98 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 98.85 | |
| 1hye_A | 313 | L-lactate/malate dehydrogenase; nucleotide binding | 98.83 | |
| 1o6z_A | 303 | MDH, malate dehydrogenase; halophilic, ION-binding | 98.77 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 98.62 | |
| 3zen_D | 3089 | Fatty acid synthase; transferase, mycolic acid bio | 98.54 | |
| 1ff9_A | 450 | Saccharopine reductase; lysine biosynthesis, alpha | 98.5 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 98.48 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 98.46 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 98.43 | |
| 1lu9_A | 287 | Methylene tetrahydromethanopterin dehydrogenase; a | 98.38 | |
| 5mdh_A | 333 | Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH | 98.33 | |
| 3abi_A | 365 | Putative uncharacterized protein PH1688; L-lysine | 98.31 | |
| 4ina_A | 405 | Saccharopine dehydrogenase; structural genomics, P | 98.29 | |
| 1mld_A | 314 | Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D | 98.26 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 98.12 | |
| 2axq_A | 467 | Saccharopine dehydrogenase; rossmann fold variant, | 98.06 | |
| 2gk4_A | 232 | Conserved hypothetical protein; alpha-beta-alpha s | 97.97 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 97.97 | |
| 1dih_A | 273 | Dihydrodipicolinate reductase; oxidoreductase; HET | 97.86 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 97.84 | |
| 2aef_A | 234 | Calcium-gated potassium channel MTHK; rossmann fol | 97.8 | |
| 3fi9_A | 343 | Malate dehydrogenase; structural genomics, oxidore | 97.75 | |
| 1u7z_A | 226 | Coenzyme A biosynthesis bifunctional protein coabc | 97.75 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 97.74 | |
| 3pqe_A | 326 | L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas | 97.49 | |
| 2z2v_A | 365 | Hypothetical protein PH1688; L-lysine dehydrogenas | 97.45 | |
| 4ggo_A | 401 | Trans-2-enoyl-COA reductase; rossmann fold, oxidor | 97.32 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 97.28 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 97.26 | |
| 2nqt_A | 352 | N-acetyl-gamma-glutamyl-phosphate reductase; apopr | 97.23 | |
| 3vku_A | 326 | L-LDH, L-lactate dehydrogenase; rossmann fold, NAD | 97.21 | |
| 1ur5_A | 309 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 97.2 | |
| 1pzg_A | 331 | LDH, lactate dehydrogenase; apicomplexa, APAD, tet | 97.08 | |
| 4h7p_A | 345 | Malate dehydrogenase; ssgcid, structural G seattle | 97.07 | |
| 1lnq_A | 336 | MTHK channels, potassium channel related protein; | 97.04 | |
| 3hhp_A | 312 | Malate dehydrogenase; MDH, citric acid cycle, TCA | 97.01 | |
| 3d0o_A | 317 | L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly | 97.0 | |
| 3gvi_A | 324 | Malate dehydrogenase; NAD, oxidoreductase, tricarb | 96.95 | |
| 3p7m_A | 321 | Malate dehydrogenase; putative dehydrogenase, enzy | 96.93 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 96.92 | |
| 1oju_A | 294 | MDH, malate dehydrogenase; hyperthermophilic, oxid | 96.92 | |
| 1y6j_A | 318 | L-lactate dehydrogenase; southeast collaboratory f | 96.92 | |
| 1xyg_A | 359 | Putative N-acetyl-gamma-glutamyl-phosphate reduct; | 96.92 | |
| 2x0j_A | 294 | Malate dehydrogenase; oxidoreductase, hyperthermop | 96.91 | |
| 1jw9_B | 249 | Molybdopterin biosynthesis MOEB protein; MOEB: mod | 96.89 | |
| 1ys4_A | 354 | Aspartate-semialdehyde dehydrogenase; oxidoreducta | 96.83 | |
| 3tl2_A | 315 | Malate dehydrogenase; center for structural genomi | 96.77 | |
| 2hjs_A | 340 | USG-1 protein homolog; aspartate-semialdehyde dehy | 96.73 | |
| 4f3y_A | 272 | DHPR, dihydrodipicolinate reductase; structural ge | 96.72 | |
| 2ozp_A | 345 | N-acetyl-gamma-glutamyl-phosphate reductase; amino | 96.72 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 96.71 | |
| 1jay_A | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma | 96.7 | |
| 2ph5_A | 480 | Homospermidine synthase; alpha-beta protein, struc | 96.68 | |
| 3nep_X | 314 | Malate dehydrogenase; halophIle, molecular adpatat | 96.64 | |
| 3tnl_A | 315 | Shikimate dehydrogenase; structural genomics, cent | 96.64 | |
| 4aj2_A | 331 | L-lactate dehydrogenase A chain; oxidoreductase-in | 96.63 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 96.55 | |
| 1ldn_A | 316 | L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA | 96.52 | |
| 3dr3_A | 337 | N-acetyl-gamma-glutamyl-phosphate reductase; csgid | 96.52 | |
| 7mdh_A | 375 | Protein (malate dehydrogenase); chloroplastic mala | 96.44 | |
| 1zud_1 | 251 | Adenylyltransferase THIF; thiamin, thiazole, prote | 96.41 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 96.41 | |
| 2r00_A | 336 | Aspartate-semialdehyde dehydrogenase; conformation | 96.41 | |
| 1qor_A | 327 | Quinone oxidoreductase; HET: NAP; 2.20A {Escherich | 96.38 | |
| 1yb5_A | 351 | Quinone oxidoreductase; medium-chain dehydrogenase | 96.36 | |
| 3pwk_A | 366 | Aspartate-semialdehyde dehydrogenase; NADP binding | 96.36 | |
| 1p9o_A | 313 | Phosphopantothenoylcysteine synthetase; ligase; 2. | 96.32 | |
| 1ez4_A | 318 | Lactate dehydrogenase; rossmann fold, oxidoreducta | 96.3 | |
| 1wly_A | 333 | CAAR, 2-haloacrylate reductase; NADPH-dependent ox | 96.27 | |
| 1t2d_A | 322 | LDH-P, L-lactate dehydrogenase; ternary complex, o | 96.26 | |
| 2vns_A | 215 | Metalloreductase steap3; metal-binding, transmembr | 96.25 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 96.24 | |
| 2zqz_A | 326 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ro | 96.24 | |
| 3h8v_A | 292 | Ubiquitin-like modifier-activating enzyme 5; rossm | 96.15 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 96.15 | |
| 2v6b_A | 304 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ra | 96.13 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 96.1 | |
| 2j8z_A | 354 | Quinone oxidoreductase; medium-chain dehydrogenase | 96.1 | |
| 3ldh_A | 330 | Lactate dehydrogenase; oxidoreductase, CHOH donor, | 96.09 | |
| 4e4t_A | 419 | Phosphoribosylaminoimidazole carboxylase, ATPase; | 96.09 | |
| 2hjr_A | 328 | Malate dehydrogenase; malaria, structural genomics | 96.0 | |
| 1iz0_A | 302 | Quinone oxidoreductase; APO-enzyme, riken structur | 96.0 | |
| 2ep5_A | 350 | 350AA long hypothetical aspartate-semialdehyde deh | 95.98 | |
| 2ewd_A | 317 | Lactate dehydrogenase,; protein-substrate_cofactor | 95.93 | |
| 2zb4_A | 357 | Prostaglandin reductase 2; rossmann fold, alternat | 95.92 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 95.92 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 95.87 | |
| 2eih_A | 343 | Alcohol dehydrogenase; zinc ION binding protein, s | 95.87 | |
| 1guz_A | 310 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 95.86 | |
| 3orq_A | 377 | N5-carboxyaminoimidazole ribonucleotide synthetas; | 95.83 | |
| 1p9l_A | 245 | Dihydrodipicolinate reductase; oxidoreductase, lys | 95.79 | |
| 2xxj_A | 310 | L-LDH, L-lactate dehydrogenase; oxidoreductase, hy | 95.75 | |
| 4dup_A | 353 | Quinone oxidoreductase; PSI-biology, structural ge | 95.75 | |
| 3pi7_A | 349 | NADH oxidoreductase; groes-like fold, NAD(P)-bindi | 95.74 | |
| 1hyh_A | 309 | L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2 | 95.73 | |
| 1mv8_A | 436 | GMD, GDP-mannose 6-dehydrogenase; rossman fold, do | 95.72 | |
| 3tz6_A | 344 | Aspartate-semialdehyde dehydrogenase; asadh, ASD, | 95.7 | |
| 1a5z_A | 319 | L-lactate dehydrogenase; oxidoreductase, glycolysi | 95.63 | |
| 3k5i_A | 403 | Phosphoribosyl-aminoimidazole carboxylase; purine | 95.62 | |
| 2i6t_A | 303 | Ubiquitin-conjugating enzyme E2-like isoform A; L- | 95.56 | |
| 1y81_A | 138 | Conserved hypothetical protein; hyperthermophIle, | 95.54 | |
| 1t4b_A | 367 | Aspartate-semialdehyde dehydrogenase; asadh, HOSR, | 95.51 | |
| 3t4e_A | 312 | Quinate/shikimate dehydrogenase; structural genomi | 95.49 | |
| 1lld_A | 319 | L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N | 95.48 | |
| 1nyt_A | 271 | Shikimate 5-dehydrogenase; alpha/beta domains, WID | 95.47 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 95.47 | |
| 1yqd_A | 366 | Sinapyl alcohol dehydrogenase; lignin, monolignol, | 95.47 | |
| 3q2o_A | 389 | Phosphoribosylaminoimidazole carboxylase, ATPase; | 95.44 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 95.38 | |
| 1y8q_A | 346 | Ubiquitin-like 1 activating enzyme E1A; SUMO, hete | 95.37 | |
| 4dpl_A | 359 | Malonyl-COA/succinyl-COA reductase; dinucleotide b | 95.37 | |
| 4dpk_A | 359 | Malonyl-COA/succinyl-COA reductase; dinucleotide b | 95.37 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 95.36 | |
| 2egg_A | 297 | AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff | 95.35 | |
| 3ax6_A | 380 | Phosphoribosylaminoimidazole carboxylase, ATPase; | 95.34 | |
| 3don_A | 277 | Shikimate dehydrogenase; alpha-beta structure, ros | 95.34 | |
| 3pzr_A | 370 | Aspartate-semialdehyde dehydrogenase; NADP, oxidor | 95.3 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 95.3 | |
| 1jvb_A | 347 | NAD(H)-dependent alcohol dehydrogenase; archaeon, | 95.24 | |
| 3g0o_A | 303 | 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine | 95.19 | |
| 3h5n_A | 353 | MCCB protein; ubiquitin-activating enzyme, microci | 95.18 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 95.14 | |
| 3oj0_A | 144 | Glutr, glutamyl-tRNA reductase; structural genomic | 95.11 | |
| 3rui_A | 340 | Ubiquitin-like modifier-activating enzyme ATG7; au | 95.01 | |
| 3jyo_A | 283 | Quinate/shikimate dehydrogenase; enzyme-cofactor c | 94.99 | |
| 2d4a_B | 308 | Malate dehydrogenase; archaea, hyperthermophIle, o | 94.96 | |
| 3uw3_A | 377 | Aspartate-semialdehyde dehydrogenase; structural g | 94.95 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 94.9 | |
| 3ijp_A | 288 | DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, | 94.88 | |
| 2cdc_A | 366 | Glucose dehydrogenase glucose 1-dehydrogenase, DHG | 94.87 | |
| 3l6d_A | 306 | Putative oxidoreductase; structural genomics, prot | 94.86 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 94.82 | |
| 2yv3_A | 331 | Aspartate-semialdehyde dehydrogenase; aspartate pa | 94.78 | |
| 2ew2_A | 316 | 2-dehydropantoate 2-reductase, putative; alpha-str | 94.78 | |
| 3c24_A | 286 | Putative oxidoreductase; YP_511008.1, structural g | 94.75 | |
| 4dll_A | 320 | 2-hydroxy-3-oxopropionate reductase; structural ge | 94.71 | |
| 3p2o_A | 285 | Bifunctional protein fold; structural genomics, ce | 94.67 | |
| 2d59_A | 144 | Hypothetical protein PH1109; COA binding, structur | 94.66 | |
| 3hsk_A | 381 | Aspartate-semialdehyde dehydrogenase; candida albi | 94.64 | |
| 3pid_A | 432 | UDP-glucose 6-dehydrogenase; rossmann fold, oxidor | 94.63 | |
| 3qy9_A | 243 | DHPR, dihydrodipicolinate reductase; rossmann fold | 94.63 | |
| 3obb_A | 300 | Probable 3-hydroxyisobutyrate dehydrogenase; struc | 94.62 | |
| 2pv7_A | 298 | T-protein [includes: chorismate mutase (EC 5.4.99 | 94.59 | |
| 1edz_A | 320 | 5,10-methylenetetrahydrofolate dehydrogenase; nucl | 94.58 | |
| 3p2y_A | 381 | Alanine dehydrogenase/pyridine nucleotide transhy; | 94.58 | |
| 3gg2_A | 450 | Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd | 94.48 | |
| 4gbj_A | 297 | 6-phosphogluconate dehydrogenase NAD-binding; stru | 94.47 | |
| 3gaz_A | 343 | Alcohol dehydrogenase superfamily protein; oxidore | 94.47 | |
| 4dio_A | 405 | NAD(P) transhydrogenase subunit alpha PART 1; stru | 94.46 | |
| 2vn8_A | 375 | Reticulon-4-interacting protein 1; mitochondrion, | 94.45 | |
| 2h78_A | 302 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601 | 94.41 | |
| 1y8q_B | 640 | Anthracycline-, ubiquitin-like 2 activating enzyme | 94.37 | |
| 3doj_A | 310 | AT3G25530, dehydrogenase-like protein; gamma-hydro | 94.37 | |
| 2o3j_A | 481 | UDP-glucose 6-dehydrogenase; structural genomics, | 94.31 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 94.31 | |
| 4ffl_A | 363 | PYLC; amino acid, biosynthesis of pyrrolysine, iso | 94.3 | |
| 4a26_A | 300 | Putative C-1-tetrahydrofolate synthase, cytoplasm; | 94.28 | |
| 1kjq_A | 391 | GART 2, phosphoribosylglycinamide formyltransferas | 94.28 | |
| 1l7d_A | 384 | Nicotinamide nucleotide transhydrogenase, subunit | 94.24 | |
| 3vtf_A | 444 | UDP-glucose 6-dehydrogenase; two discrete alpha/be | 94.21 | |
| 2cf5_A | 357 | Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign | 94.21 | |
| 2rir_A | 300 | Dipicolinate synthase, A chain; structural genomic | 94.21 | |
| 2dq4_A | 343 | L-threonine 3-dehydrogenase; NAD-dependent, oxidor | 94.2 | |
| 3l07_A | 285 | Bifunctional protein fold; structural genomics, ID | 94.2 | |
| 4a0s_A | 447 | Octenoyl-COA reductase/carboxylase; oxidoreductase | 94.18 | |
| 3m6i_A | 363 | L-arabinitol 4-dehydrogenase; medium chain dehydro | 94.15 | |
| 3fbg_A | 346 | Putative arginate lyase; structural genomics, unkn | 94.14 | |
| 3tqh_A | 321 | Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella | 94.04 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 94.01 | |
| 1piw_A | 360 | Hypothetical zinc-type alcohol dehydrogenase- like | 93.99 | |
| 4a5o_A | 286 | Bifunctional protein fold; oxidoreductase, hydrola | 93.95 | |
| 3ngx_A | 276 | Bifunctional protein fold; methylenetetrahydrofola | 93.9 | |
| 3d4o_A | 293 | Dipicolinate synthase subunit A; NP_243269.1, stru | 93.9 | |
| 4gx0_A | 565 | TRKA domain protein; membrane protein, ION channel | 93.87 | |
| 3d1l_A | 266 | Putative NADP oxidoreductase BF3122; structural ge | 93.83 | |
| 4dvj_A | 363 | Putative zinc-dependent alcohol dehydrogenase Pro; | 93.81 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 93.73 | |
| 3pef_A | 287 | 6-phosphogluconate dehydrogenase, NAD-binding; gam | 93.7 | |
| 4e21_A | 358 | 6-phosphogluconate dehydrogenase (decarboxylating; | 93.64 | |
| 2y0c_A | 478 | BCEC, UDP-glucose dehydrogenase; oxidoreductase, c | 93.61 | |
| 3pp8_A | 315 | Glyoxylate/hydroxypyruvate reductase A; structural | 93.6 | |
| 3vh1_A | 598 | Ubiquitin-like modifier-activating enzyme ATG7; au | 93.55 | |
| 1x13_A | 401 | NAD(P) transhydrogenase subunit alpha; NAD(H)-bind | 93.51 | |
| 3krt_A | 456 | Crotonyl COA reductase; structural genomics, prote | 93.5 |
| >3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-46 Score=371.99 Aligned_cols=311 Identities=24% Similarity=0.294 Sum_probs=252.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcC------CCeEEEEecCCCHHHHHH
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRS------GRAHYVSFDLRHKAQVLQ 79 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~------~~v~~~~~Dl~d~~~l~~ 79 (485)
++|+|||||||||||+++++.|+++| ++|++++|....... . ....... ++++++.+|++|++++.+
T Consensus 24 ~~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~ 96 (351)
T 3ruf_A 24 SPKTWLITGVAGFIGSNLLEKLLKLN-QVVIGLDNFSTGHQY---N---LDEVKTLVSTEQWSRFCFIEGDIRDLTTCEQ 96 (351)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCSSCCHH---H---HHHHHHTSCHHHHTTEEEEECCTTCHHHHHH
T ss_pred CCCeEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCCCCCchh---h---hhhhhhccccccCCceEEEEccCCCHHHHHH
Confidence 46899999999999999999999999 699999987542111 0 1111111 689999999999999999
Q ss_pred HhcCCCEEEEcCCCCC---CCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCccccccCCCCcCCCCCCCCCCCCCC
Q 047227 80 ALQGAEVVFHMAAPNS---SINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVVFDGVHGIINGNEALPYPPKHN 156 (485)
Q Consensus 80 ~~~~~d~Vih~aa~~~---~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy~~~~~~~~~~~e~~~~~~~~~ 156 (485)
+++++|+|||+|+... ...++...+++|+.++.+++++|++.+++||||+||.++|++... .+.+|+.+ ..|.
T Consensus 97 ~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~v~~SS~~vyg~~~~--~~~~E~~~--~~p~ 172 (351)
T 3ruf_A 97 VMKGVDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQSFTYAASSSTYGDHPA--LPKVEENI--GNPL 172 (351)
T ss_dssp HTTTCSEEEECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEGGGGTTCCC--SSBCTTCC--CCCC
T ss_pred HhcCCCEEEECCccCCcchhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEecHHhcCCCCC--CCCccCCC--CCCC
Confidence 9999999999999432 334677889999999999999999999999999999999975543 33455543 5788
Q ss_pred chHHHHHHHHHHHHHHHhCCCCceEEEEecCCcccCCCC------CChHHHHHHHHcCCCeEEecCCCceeecccHHHHH
Q 047227 157 DFYSATKAEGEALVIKANGTNGLLTCCIRPSSIFGPGDR------LLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVA 230 (485)
Q Consensus 157 ~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~------~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~D~a 230 (485)
+.|+.+|..+|++++.++++.+++++++||+++|||+.. .+++.++..+..++++.++|++++.++|+|++|+|
T Consensus 173 ~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~i~v~Dva 252 (351)
T 3ruf_A 173 SPYAVTKYVNEIYAQVYARTYGFKTIGLRYFNVFGRRQDPNGAYAAVIPKWTAAMLKGDDVYINGDGETSRDFCYIDNVI 252 (351)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHCCCCEEEEECSEESTTCCCCSTTCCHHHHHHHHHHHTCCCEEESSSCCEECCEEHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHhCCCEEEEeeCceeCcCCCCCcchhhHHHHHHHHHHcCCCcEEeCCCCeEEeeEEHHHHH
Confidence 999999999999999988778999999999999999864 35788888899999999999999999999999999
Q ss_pred HHHHHHHHHhccccchhhccCCcEEEeeCCCCccHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCCC
Q 047227 231 HAHICAERALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELTYRLLGPYGMK 310 (485)
Q Consensus 231 ~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~~t~~el~~~i~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 310 (485)
++++.+++.. +...+++||+++++++|+.|+++.+.+.+|.+......+... . .
T Consensus 253 ~a~~~~~~~~-------~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~---------------~----~ 306 (351)
T 3ruf_A 253 QMNILSALAK-------DSAKDNIYNVAVGDRTTLNELSGYIYDELNLIHHIDKLSIKY---------------R----E 306 (351)
T ss_dssp HHHHHHHTCC-------GGGCSEEEEESCSCCEEHHHHHHHHHHHHHTTCCC-----EE---------------E----C
T ss_pred HHHHHHHhhc-------cccCCCEEEeCCCCcccHHHHHHHHHHHhCcccccccccccc---------------c----C
Confidence 9999887631 235689999999999999999999999999854332222110 0 0
Q ss_pred CCCCCHHHHHhhccceeeehhhHHhhcCCCCCCChHHHHHHHHHHHHHhH
Q 047227 311 VPQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSYSHLR 360 (485)
Q Consensus 311 ~p~~~~~~~~~~~~~~~~d~~ka~~~lG~~p~~~l~e~i~~~~~~~~~~~ 360 (485)
.. +. ......+|++|+++.|||+|+++++++++++++||++..
T Consensus 307 ~~---~~----~~~~~~~d~~k~~~~lG~~p~~~~~~~l~~~~~~~~~~~ 349 (351)
T 3ruf_A 307 FR---SG----DVRHSQADVTKAIDLLKYRPNIKIREGLRLSMPWYVRFL 349 (351)
T ss_dssp CC---TT----CCSBCCBCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
T ss_pred CC---CC----ccceeeeCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhh
Confidence 00 00 112456899999999999999999999999999998754
|
| >3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-45 Score=359.73 Aligned_cols=296 Identities=20% Similarity=0.214 Sum_probs=248.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCCCE
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGAEV 86 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~d~ 86 (485)
+|+|||||||||||+++++.|+++| ++|++++|.+... . + ++++++.+|++ ++++.++++++|+
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~-----------~-~--~~~~~~~~Dl~-~~~~~~~~~~~d~ 65 (311)
T 3m2p_A 2 SLKIAVTGGTGFLGQYVVESIKNDG-NTPIILTRSIGNK-----------A-I--NDYEYRVSDYT-LEDLINQLNDVDA 65 (311)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCCC-------------------CCEEEECCCC-HHHHHHHTTTCSE
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCC-CEEEEEeCCCCcc-----------c-C--CceEEEEcccc-HHHHHHhhcCCCE
Confidence 4799999999999999999999999 5999999873211 0 1 27899999999 9999999999999
Q ss_pred EEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCccccccCCCCcCCCCCCCCCCCCCCchHHHHHHHH
Q 047227 87 VFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDFYSATKAEG 166 (485)
Q Consensus 87 Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy~~~~~~~~~~~e~~~~~~~~~~~Y~~sK~~~ 166 (485)
|||+|+..... ++...+++|+.++.+++++|++.+++||||+||.++|++.... +.+|+. +..|.+.|+.+|..+
T Consensus 66 Vih~a~~~~~~-~~~~~~~~n~~~~~~ll~a~~~~~~~r~v~~SS~~vyg~~~~~--~~~E~~--~~~p~~~Y~~sK~~~ 140 (311)
T 3m2p_A 66 VVHLAATRGSQ-GKISEFHDNEILTQNLYDACYENNISNIVYASTISAYSDETSL--PWNEKE--LPLPDLMYGVSKLAC 140 (311)
T ss_dssp EEECCCCCCSS-SCGGGTHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCCGGGC--SBCTTS--CCCCSSHHHHHHHHH
T ss_pred EEEccccCCCC-ChHHHHHHHHHHHHHHHHHHHHcCCCEEEEEccHHHhCCCCCC--CCCCCC--CCCCCchhHHHHHHH
Confidence 99999955443 7788899999999999999999999999999999999754333 334444 367889999999999
Q ss_pred HHHHHHHhCCCCceEEEEecCCcccCCCC--CChHHHHHHHHcCCCeEEecCCCceeecccHHHHHHHHHHHHHHhcccc
Q 047227 167 EALVIKANGTNGLLTCCIRPSSIFGPGDR--LLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICAERALASEV 244 (485)
Q Consensus 167 E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~--~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~D~a~a~~~~~~~~~~~~ 244 (485)
|++++.++++.+++++++||+++|||+.. .+++.++..+..|+++.++|++++.++|+|++|+|++++.+++.
T Consensus 141 E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~v~v~Dva~a~~~~~~~----- 215 (311)
T 3m2p_A 141 EHIGNIYSRKKGLCIKNLRFAHLYGFNEKNNYMINRFFRQAFHGEQLTLHANSVAKREFLYAKDAAKSVIYALKQ----- 215 (311)
T ss_dssp HHHHHHHHHHSCCEEEEEEECEEECSCC--CCHHHHHHHHHHTCCCEEESSBCCCCEEEEEHHHHHHHHHHHTTC-----
T ss_pred HHHHHHHHHHcCCCEEEEeeCceeCcCCCCCCHHHHHHHHHHcCCCeEEecCCCeEEceEEHHHHHHHHHHHHhc-----
Confidence 99999998878999999999999999876 67888999999999999999999999999999999999988662
Q ss_pred chhhccCCcEEEeeCCCCccHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCCCCCCCCHHHHHhhcc
Q 047227 245 TVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELTYRLLGPYGMKVPQLTPSRVRLLSC 324 (485)
Q Consensus 245 ~~~~~~~g~~ynv~~~~~~t~~el~~~i~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 324 (485)
+ ..+++||+++++++|+.|+++.+.+.+|.+.+....|.. . .....
T Consensus 216 ---~-~~~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~----------------------~--------~~~~~ 261 (311)
T 3m2p_A 216 ---E-KVSGTFNIGSGDALTNYEVANTINNAFGNKDNLLVKNPN----------------------A--------NEGIH 261 (311)
T ss_dssp ---T-TCCEEEEECCSCEECHHHHHHHHHHHTTCTTCEEECSSS----------------------B--------CCSCC
T ss_pred ---C-CCCCeEEeCCCCcccHHHHHHHHHHHhCCCCcceecCCC----------------------C--------CCCcC
Confidence 2 268899999999999999999999999987665544321 0 00123
Q ss_pred ceeeehhhHHhhcCCCCCCChHHHHHHHHHHHHHhHhc
Q 047227 325 SRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSYSHLRAE 362 (485)
Q Consensus 325 ~~~~d~~ka~~~lG~~p~~~l~e~i~~~~~~~~~~~~~ 362 (485)
...+|++|+++.|||+|.++++|+++++++||++.++.
T Consensus 262 ~~~~d~~k~~~~lG~~p~~~~~~~l~~~~~~~~~~~~~ 299 (311)
T 3m2p_A 262 SSYMDSSKAKELLDFSTDYNFATAVEEIHLLMRGLDDV 299 (311)
T ss_dssp CBCBCCHHHHHHSCCCCSCCHHHHHHHHHHHHCC----
T ss_pred ceecCHHHHHHHhCCCcccCHHHHHHHHHHHHHhcccC
Confidence 45689999999999999999999999999999876654
|
| >4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-45 Score=363.92 Aligned_cols=310 Identities=21% Similarity=0.232 Sum_probs=248.2
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCC-ceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcC
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDM-FSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQG 83 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~ 83 (485)
+++|+|||||||||||+++++.|+++|+ ++|++.+|..... ... .+......++++++.+|++|++++.+++++
T Consensus 22 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~~~v~~~~~~~~~~--~~~---~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~ 96 (346)
T 4egb_A 22 SNAMNILVTGGAGFIGSNFVHYMLQSYETYKIINFDALTYSG--NLN---NVKSIQDHPNYYFVKGEIQNGELLEHVIKE 96 (346)
T ss_dssp --CEEEEEETTTSHHHHHHHHHHHHHCTTEEEEEEECCCTTC--CGG---GGTTTTTCTTEEEEECCTTCHHHHHHHHHH
T ss_pred cCCCeEEEECCccHHHHHHHHHHHhhCCCcEEEEEecccccc--chh---hhhhhccCCCeEEEEcCCCCHHHHHHHHhh
Confidence 3568999999999999999999999984 3666766654211 111 122223346899999999999999999987
Q ss_pred --CCEEEEcCCCCC---CCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCccccccCCCCcCCCCCCCCCCCCCCch
Q 047227 84 --AEVVFHMAAPNS---SINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDF 158 (485)
Q Consensus 84 --~d~Vih~aa~~~---~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy~~~~~~~~~~~e~~~~~~~~~~~ 158 (485)
+|+|||+|+... ...++..++++|+.++.+++++|++.+++||||+||.++|+... ...+.+|+.+ ..|.+.
T Consensus 97 ~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~v~~SS~~vy~~~~-~~~~~~E~~~--~~p~~~ 173 (346)
T 4egb_A 97 RDVQVIVNFAAESHVDRSIENPIPFYDTNVIGTVTLLELVKKYPHIKLVQVSTDEVYGSLG-KTGRFTEETP--LAPNSP 173 (346)
T ss_dssp HTCCEEEECCCCC---------CHHHHHHTHHHHHHHHHHHHSTTSEEEEEEEGGGGCCCC-SSCCBCTTSC--CCCCSH
T ss_pred cCCCEEEECCcccchhhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeCchHHhCCCC-cCCCcCCCCC--CCCCCh
Confidence 999999999432 44677889999999999999999999999999999999997543 2223445443 578899
Q ss_pred HHHHHHHHHHHHHHHhCCCCceEEEEecCCcccCCCC--CChHHHHHHHHcCCCeEEecCCCceeecccHHHHHHHHHHH
Q 047227 159 YSATKAEGEALVIKANGTNGLLTCCIRPSSIFGPGDR--LLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICA 236 (485)
Q Consensus 159 Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~--~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~D~a~a~~~~ 236 (485)
|+.+|..+|++++.++++++++++++||+++|||+.. .+++.++..+..++++.++|++++.++|+|++|+|++++.+
T Consensus 174 Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~ 253 (346)
T 4egb_A 174 YSSSKASADMIALAYYKTYQLPVIVTRCSNNYGPYQYPEKLIPLMVTNALEGKKLPLYGDGLNVRDWLHVTDHCSAIDVV 253 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCEEEEEECEEESTTCCTTSHHHHHHHHHHTTCCCEEETTSCCEECEEEHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhCCCEEEEeecceeCcCCCccchHHHHHHHHHcCCCceeeCCCCeEEeeEEHHHHHHHHHHH
Confidence 9999999999999998878999999999999999874 56788899999999999999999999999999999999998
Q ss_pred HHHhccccchhhccCCcEEEeeCCCCccHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCCCCCCCCH
Q 047227 237 ERALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELTYRLLGPYGMKVPQLTP 316 (485)
Q Consensus 237 ~~~~~~~~~~~~~~~g~~ynv~~~~~~t~~el~~~i~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 316 (485)
++. + ..|++||+++++++++.|+++.+.+.+|.+.+.+.... ..+
T Consensus 254 ~~~--------~-~~g~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~----------------------~~~---- 298 (346)
T 4egb_A 254 LHK--------G-RVGEVYNIGGNNEKTNVEVVEQIITLLGKTKKDIEYVT----------------------DRL---- 298 (346)
T ss_dssp HHH--------C-CTTCEEEECCSCCEEHHHHHHHHHHHHTCCGGGCEEEC----------------------C------
T ss_pred Hhc--------C-CCCCEEEECCCCceeHHHHHHHHHHHhCCCcccccccC----------------------CCC----
Confidence 873 2 36789999999999999999999999998754322100 000
Q ss_pred HHHHhhccceeeehhhHHhhcCCCCCCChHHHHHHHHHHHHHhHh
Q 047227 317 SRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSYSHLRA 361 (485)
Q Consensus 317 ~~~~~~~~~~~~d~~ka~~~lG~~p~~~l~e~i~~~~~~~~~~~~ 361 (485)
.......+|++|+++.|||+|.++++|+++++++||++..+
T Consensus 299 ----~~~~~~~~d~~k~~~~lG~~p~~~~~e~l~~~~~~~~~~~~ 339 (346)
T 4egb_A 299 ----GHDRRYAINAEKMKNEFDWEPKYTFEQGLQETVQWYEKNEE 339 (346)
T ss_dssp ----CCCSCCCBCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHCHH
T ss_pred ----CCcceeeccHHHHHHHcCCCCCCCHHHHHHHHHHHHHhhhh
Confidence 00123457999999999999999999999999999988654
|
| >4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-44 Score=361.47 Aligned_cols=296 Identities=22% Similarity=0.251 Sum_probs=250.1
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCC
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGA 84 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 84 (485)
.++|+|||||||||||+++++.|+++| ++|++++|.... .+++++.+|++|.+++.++++++
T Consensus 17 ~~~~~vlVtGatG~iG~~l~~~L~~~G-~~V~~~~r~~~~-----------------~~~~~~~~Dl~d~~~~~~~~~~~ 78 (347)
T 4id9_A 17 RGSHMILVTGSAGRVGRAVVAALRTQG-RTVRGFDLRPSG-----------------TGGEEVVGSLEDGQALSDAIMGV 78 (347)
T ss_dssp ----CEEEETTTSHHHHHHHHHHHHTT-CCEEEEESSCCS-----------------SCCSEEESCTTCHHHHHHHHTTC
T ss_pred cCCCEEEEECCCChHHHHHHHHHHhCC-CEEEEEeCCCCC-----------------CCccEEecCcCCHHHHHHHHhCC
Confidence 356899999999999999999999999 699999887541 46889999999999999999999
Q ss_pred CEEEEcCCCCC-CCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCccccccCCCCcCCCCCCCCCCCCCCchHHHHH
Q 047227 85 EVVFHMAAPNS-SINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDFYSATK 163 (485)
Q Consensus 85 d~Vih~aa~~~-~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy~~~~~~~~~~~e~~~~~~~~~~~Y~~sK 163 (485)
|+|||+|+... ...+....+++|+.++.+++++|++.+++||||+||.+||++......+.+|..+ ..|.+.|+.+|
T Consensus 79 d~vih~A~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~V~~SS~~vyg~~~~~~~~~~E~~~--~~~~~~Y~~sK 156 (347)
T 4id9_A 79 SAVLHLGAFMSWAPADRDRMFAVNVEGTRRLLDAASAAGVRRFVFASSGEVYPENRPEFLPVTEDHP--LCPNSPYGLTK 156 (347)
T ss_dssp SEEEECCCCCCSSGGGHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEGGGTTTTSCSSSSBCTTSC--CCCCSHHHHHH
T ss_pred CEEEECCcccCcchhhHHHHHHHHHHHHHHHHHHHHHcCCCeEEEECCHHHhCCCCCCCCCcCCCCC--CCCCChHHHHH
Confidence 99999999443 3344578999999999999999999999999999999999864344445556544 57889999999
Q ss_pred HHHHHHHHHHhCCCCceEEEEecCCcc-------------cCCC-------------CCChHHHHHHHHcCCCeEEecCC
Q 047227 164 AEGEALVIKANGTNGLLTCCIRPSSIF-------------GPGD-------------RLLVPSLVAAARAGKSKFIIGDG 217 (485)
Q Consensus 164 ~~~E~~~~~~~~~~g~~~~ilRp~~v~-------------Gp~~-------------~~~~~~~~~~~~~g~~~~~~g~g 217 (485)
..+|++++.++++.+++++++||+++| ||+. ..+++.++..+..|+++.++|++
T Consensus 157 ~~~E~~~~~~~~~~~~~~~ilRp~~v~~~~~~~~~~~~~~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 236 (347)
T 4id9_A 157 LLGEELVRFHQRSGAMETVILRFSHTQDATELLDEDSFFSGPRFFLRPRIHQQQNFGNAAIAELLQSRDIGEPSHILARN 236 (347)
T ss_dssp HHHHHHHHHHHHHSSSEEEEEEECEEECGGGTTCTTSSSHHHHHBHHHHHHHHHHHTCHHHHHHHHHHCCSSCCEEEEEC
T ss_pred HHHHHHHHHHHHhcCCceEEEccceEeecccccccccccCCCCcccccccccccccchhHHHHHHHHHHcCCCeEEeCCC
Confidence 999999999988889999999999999 8862 35677788888999998999999
Q ss_pred Cceeec----ccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCCCccHHHHHHHHHHHcCCCCCCccCCHHHHHHH
Q 047227 218 NNVYDF----TYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPI 293 (485)
Q Consensus 218 ~~~~~~----i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~~t~~el~~~i~~~~g~~~~~~~~p~~~~~~~ 293 (485)
++.++| +|++|+|++++.+++. +...+++||+++++++|+.|+++.+.+.+|.+.+...+|..
T Consensus 237 ~~~~~~~~~~i~v~Dva~ai~~~~~~--------~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~p~~----- 303 (347)
T 4id9_A 237 ENGRPFRMHITDTRDMVAGILLALDH--------PEAAGGTFNLGADEPADFAALLPKIAALTGLPIVTVDFPGD----- 303 (347)
T ss_dssp TTCCBCEECEEEHHHHHHHHHHHHHC--------GGGTTEEEEESCSSCEEHHHHHHHHHHHHCCCEEEEECSSC-----
T ss_pred CcccCCccCcEeHHHHHHHHHHHhcC--------cccCCCeEEECCCCcccHHHHHHHHHHHhCCCCceeeCCCc-----
Confidence 999999 9999999999999873 22458899999999999999999999999987665443321
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCHHHHHhhccceeeehhhHHhhcCCCCCCChHHHHHHHHHHHHHhHhc
Q 047227 294 AHMVELTYRLLGPYGMKVPQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSYSHLRAE 362 (485)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~d~~ka~~~lG~~p~~~l~e~i~~~~~~~~~~~~~ 362 (485)
+ ....+|++|+++.|||+|+++++|+++++++||++....
T Consensus 304 ------------------~-----------~~~~~d~~k~~~~lG~~p~~~~~~~l~~~~~~~~~~~~~ 343 (347)
T 4id9_A 304 ------------------G-----------VYYHTSNERIRNTLGFEAEWTMDRMLEEAATARRQRLAK 343 (347)
T ss_dssp ------------------C-----------CBCCBCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCC-
T ss_pred ------------------c-----------cccccCHHHHHHHhCCCCCCCHHHHHHHHHHHHHhhhhc
Confidence 0 045689999999999999999999999999999885543
|
| >3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-44 Score=364.79 Aligned_cols=322 Identities=16% Similarity=0.220 Sum_probs=250.5
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhc-CCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCC-CHHHHHHHhc
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRY-DMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLR-HKAQVLQALQ 82 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~-G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~-d~~~l~~~~~ 82 (485)
+++|+|||||||||||+++++.|+++ | ++|++++|..... ......++++++.+|++ |.+.+.++++
T Consensus 22 m~~~~vlVtGatG~iG~~l~~~L~~~~g-~~V~~~~r~~~~~----------~~~~~~~~v~~~~~Dl~~d~~~~~~~~~ 90 (372)
T 3slg_A 22 MKAKKVLILGVNGFIGHHLSKRILETTD-WEVFGMDMQTDRL----------GDLVKHERMHFFEGDITINKEWVEYHVK 90 (372)
T ss_dssp -CCCEEEEESCSSHHHHHHHHHHHHHSS-CEEEEEESCCTTT----------GGGGGSTTEEEEECCTTTCHHHHHHHHH
T ss_pred cCCCEEEEECCCChHHHHHHHHHHhCCC-CEEEEEeCChhhh----------hhhccCCCeEEEeCccCCCHHHHHHHhc
Confidence 45789999999999999999999998 8 6999999875421 12223468999999999 9999999999
Q ss_pred CCCEEEEcCCCCC---CCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCccccccCCCCcCCCCCCCCC----CCCC
Q 047227 83 GAEVVFHMAAPNS---SINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVVFDGVHGIINGNEALPY----PPKH 155 (485)
Q Consensus 83 ~~d~Vih~aa~~~---~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy~~~~~~~~~~~e~~~~----~~~~ 155 (485)
++|+|||+|+... ...++...+++|+.++.+++++|++.+ +||||+||.+||+........++.. +. ...|
T Consensus 91 ~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~-~~~v~~SS~~vyg~~~~~~~~e~~~-~~~~~p~~~p 168 (372)
T 3slg_A 91 KCDVILPLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYG-KHLVFPSTSEVYGMCADEQFDPDAS-ALTYGPINKP 168 (372)
T ss_dssp HCSEEEECBCCCCHHHHHHCHHHHHHHHTTTTHHHHHHHHHHT-CEEEEECCGGGGBSCCCSSBCTTTC-CEEECCTTCT
T ss_pred cCCEEEEcCccccHHHHhhCHHHHHHHHHHHHHHHHHHHHHhC-CcEEEeCcHHHhCCCCCCCCCcccc-ccccCCCCCC
Confidence 9999999999543 234677889999999999999999999 9999999999998654433322221 10 1257
Q ss_pred CchHHHHHHHHHHHHHHHhCCCCceEEEEecCCcccCCCCC----------ChHHHHHHHHcCCCeEEecCCCceeeccc
Q 047227 156 NDFYSATKAEGEALVIKANGTNGLLTCCIRPSSIFGPGDRL----------LVPSLVAAARAGKSKFIIGDGNNVYDFTY 225 (485)
Q Consensus 156 ~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~~----------~~~~~~~~~~~g~~~~~~g~g~~~~~~i~ 225 (485)
.+.|+.+|..+|++++.++++ +++++++||+++|||+... +++.++..+..++++.+++++++.++|+|
T Consensus 169 ~~~Y~~sK~~~E~~~~~~~~~-g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~ 247 (372)
T 3slg_A 169 RWIYACSKQLMDRVIWGYGME-GLNFTLFRPFNWIGPGLDSIYTPKEGSSRVVTQFLGHIVRGENISLVDGGSQKRAFTY 247 (372)
T ss_dssp THHHHHHHHHHHHHHHHHHTT-TCEEEEEEECSEECSSCCCTTCSBSCSCHHHHHHHHHHHHTCCEEEGGGGCCEEECEE
T ss_pred CCcHHHHHHHHHHHHHHHHHC-CCCEEEEccccccCCCcccccccccccchHHHHHHHHHHcCCCcEEeCCCceEEEEEE
Confidence 779999999999999999887 9999999999999998642 57788889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccccchhhccCCcEEEeeCC-CCccHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHh
Q 047227 226 VANVAHAHICAERALASEVTVAEKAAGQAYFVTNM-ESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELTYRLL 304 (485)
Q Consensus 226 v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~-~~~t~~el~~~i~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~ 304 (485)
++|+|++++.+++.... ...+++||++++ +++|+.|+++.+.+.+|.+.+....|...
T Consensus 248 v~Dva~a~~~~~~~~~~------~~~~~~~ni~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~--------------- 306 (372)
T 3slg_A 248 VDDGISALMKIIENSNG------VATGKIYNIGNPNNNFSVRELANKMLELAAEFPEYADSAKRV--------------- 306 (372)
T ss_dssp HHHHHHHHHHHHHCGGG------TTTTEEEEECCTTCEEEHHHHHHHHHHHHHHCTTTHHHHHTC---------------
T ss_pred HHHHHHHHHHHHhcccC------cCCCceEEeCCCCCCccHHHHHHHHHHHhCCCcccccccccc---------------
Confidence 99999999999874221 146899999995 89999999999999999875543322100
Q ss_pred CCCCCCCCCCCHHHHHhhccceeeehhhHHhhcCCCCCCChHHHHHHHHHHHHHhHhc
Q 047227 305 GPYGMKVPQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSYSHLRAE 362 (485)
Q Consensus 305 ~~~~~~~p~~~~~~~~~~~~~~~~d~~ka~~~lG~~p~~~l~e~i~~~~~~~~~~~~~ 362 (485)
.........+... .........+|++|+++.|||+|+++++|+++++++||++....
T Consensus 307 ~~~~~~~~~~~~~-~~~~~~~~~~d~~k~~~~lG~~p~~~l~e~l~~~~~~~~~~~~~ 363 (372)
T 3slg_A 307 KLVETTSGAYYGN-GYQDVQNRVPKIENTMQELGWAPQFTFDDALRQIFEAYRGHVAD 363 (372)
T ss_dssp CEEEC--------------CCCCBCCHHHHHHHTCCCCCCHHHHHHHHHHHHTTCHHH
T ss_pred eeeeccccccccC-CccccceeecCHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 0000000000000 00112345679999999999999999999999999999876543
|
| >2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-44 Score=354.31 Aligned_cols=318 Identities=18% Similarity=0.241 Sum_probs=244.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCCC
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGAE 85 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~d 85 (485)
++|+|||||||||||+++++.|+++| ++|++++|...... .+...+++++.+|++|++++.++++++|
T Consensus 12 ~~M~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~-----------~l~~~~~~~~~~Dl~d~~~~~~~~~~~d 79 (342)
T 2x4g_A 12 AHVKYAVLGATGLLGHHAARAIRAAG-HDLVLIHRPSSQIQ-----------RLAYLEPECRVAEMLDHAGLERALRGLD 79 (342)
T ss_dssp CCCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEECTTSCGG-----------GGGGGCCEEEECCTTCHHHHHHHTTTCS
T ss_pred cCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEecChHhhh-----------hhccCCeEEEEecCCCHHHHHHHHcCCC
Confidence 35799999999999999999999999 69999998754210 1122478999999999999999999999
Q ss_pred EEEEcCCCCC-CCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCccccccCCCCcCCCCCCCCCCCCC----CchHH
Q 047227 86 VVFHMAAPNS-SINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVVFDGVHGIINGNEALPYPPKH----NDFYS 160 (485)
Q Consensus 86 ~Vih~aa~~~-~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy~~~~~~~~~~~e~~~~~~~~----~~~Y~ 160 (485)
+|||+|+... ...++...+++|+.++.+++++|++.+++||||+||.++|+.......+ +|+.+ ..| .+.|+
T Consensus 80 ~vih~a~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~SS~~~~~~~~~~~~~-~E~~~--~~p~~~~~~~Y~ 156 (342)
T 2x4g_A 80 GVIFSAGYYPSRPRRWQEEVASALGQTNPFYAACLQARVPRILYVGSAYAMPRHPQGLPG-HEGLF--YDSLPSGKSSYV 156 (342)
T ss_dssp EEEEC------------CHHHHHHHHHHHHHHHHHHHTCSCEEEECCGGGSCCCTTSSCB-CTTCC--CSSCCTTSCHHH
T ss_pred EEEECCccCcCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEECCHHhhCcCCCCCCC-CCCCC--CCccccccChHH
Confidence 9999999433 3457788999999999999999999999999999999999754432223 55544 455 78999
Q ss_pred HHHHHHHHHHHHHhCCCCceEEEEecCCcccCCC-C-CChHHHHHHHHcCCCeEEecCCCceeecccHHHHHHHHHHHHH
Q 047227 161 ATKAEGEALVIKANGTNGLLTCCIRPSSIFGPGD-R-LLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICAER 238 (485)
Q Consensus 161 ~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~-~-~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~D~a~a~~~~~~ 238 (485)
.+|..+|++++.+++. +++++++||+++|||+. + . ++.++..+..|....+ +++.++|+|++|+|++++.+++
T Consensus 157 ~sK~~~e~~~~~~~~~-g~~~~ilrp~~v~g~~~~~~~-~~~~~~~~~~~~~~~~---~~~~~~~i~v~Dva~~~~~~~~ 231 (342)
T 2x4g_A 157 LCKWALDEQAREQARN-GLPVVIGIPGMVLGELDIGPT-TGRVITAIGNGEMTHY---VAGQRNVIDAAEAGRGLLMALE 231 (342)
T ss_dssp HHHHHHHHHHHHHHHT-TCCEEEEEECEEECSCCSSCS-TTHHHHHHHTTCCCEE---ECCEEEEEEHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhc-CCcEEEEeCCceECCCCcccc-HHHHHHHHHcCCCccc---cCCCcceeeHHHHHHHHHHHHh
Confidence 9999999999998876 99999999999999986 3 3 6677777788876655 5678999999999999999877
Q ss_pred HhccccchhhccCCcEEEeeCCCCccHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCCCCCCCCHHH
Q 047227 239 ALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELTYRLLGPYGMKVPQLTPSR 318 (485)
Q Consensus 239 ~~~~~~~~~~~~~g~~ynv~~~~~~t~~el~~~i~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 318 (485)
. +.. |++||+++++ +|+.|+++.+.+.+|.+.+. .+|.+....++.+.+++....+ ..|.+.+..
T Consensus 232 ~--------~~~-g~~~~v~~~~-~s~~e~~~~i~~~~g~~~~~-~~p~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 296 (342)
T 2x4g_A 232 R--------GRI-GERYLLTGHN-LEMADLTRRIAELLGQPAPQ-PMSMAMARALATLGRLRYRVSG----QLPLLDETA 296 (342)
T ss_dssp H--------SCT-TCEEEECCEE-EEHHHHHHHHHHHHTCCCCE-EECHHHHHHHHHHHHC-------------------
T ss_pred C--------CCC-CceEEEcCCc-ccHHHHHHHHHHHhCCCCCC-cCCHHHHHHHHHHHHHHHHhhC----CCCCCCHHH
Confidence 3 222 7899999999 99999999999999998877 8888877666655554443322 122222222
Q ss_pred HHhhccceeeehhhHHhhcCC-CCCCChHHHHHHHHHHHHHh
Q 047227 319 VRLLSCSRTFDCSKAKDLLGY-MPIVPLEEGIKRTVDSYSHL 359 (485)
Q Consensus 319 ~~~~~~~~~~d~~ka~~~lG~-~p~~~l~e~i~~~~~~~~~~ 359 (485)
...+.....+|++|+++.||| +| .+++|+++++++||++.
T Consensus 297 ~~~~~~~~~~d~~k~~~~lG~~~p-~~~~~~l~~~~~~~~~~ 337 (342)
T 2x4g_A 297 IEVMAGGQFLDGRKAREELGFFST-TALDDTLLRAIDWFRDN 337 (342)
T ss_dssp -CCTTCCCCBCCHHHHHHHCCCCC-SCHHHHHHHHHHHHHHT
T ss_pred HHHHhcCcccChHHHHHhCCCCCC-CCHHHHHHHHHHHHHHc
Confidence 222345667899999999999 99 89999999999999864
|
| >3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-44 Score=351.90 Aligned_cols=300 Identities=23% Similarity=0.261 Sum_probs=239.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCCCE
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGAEV 86 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~d~ 86 (485)
||+||||||+||||+++++.|+++| +.|.+.++..... .....+++++.+|++| +++.++++++|+
T Consensus 1 M~~vlVTGatG~iG~~l~~~L~~~g-~~v~~~~~~~~~~------------~~~~~~~~~~~~Dl~~-~~~~~~~~~~d~ 66 (313)
T 3ehe_A 1 MSLIVVTGGAGFIGSHVVDKLSESN-EIVVIDNLSSGNE------------EFVNEAARLVKADLAA-DDIKDYLKGAEE 66 (313)
T ss_dssp --CEEEETTTSHHHHHHHHHHTTTS-CEEEECCCSSCCG------------GGSCTTEEEECCCTTT-SCCHHHHTTCSE
T ss_pred CCEEEEECCCchHHHHHHHHHHhCC-CEEEEEcCCCCCh------------hhcCCCcEEEECcCCh-HHHHHHhcCCCE
Confidence 3689999999999999999999999 5666554433211 0113578999999999 889999999999
Q ss_pred EEEcCCC---CCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCccccccCCCCcCCCCCCCCCCCCCCchHHHHH
Q 047227 87 VFHMAAP---NSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDFYSATK 163 (485)
Q Consensus 87 Vih~aa~---~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy~~~~~~~~~~~e~~~~~~~~~~~Y~~sK 163 (485)
|||+|+. ..+..++...+++|+.++.+++++|++.++++|||+||.++|++.... +.+|+. +..|.+.|+.+|
T Consensus 67 vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~vyg~~~~~--~~~E~~--~~~~~~~Y~~sK 142 (313)
T 3ehe_A 67 VWHIAANPDVRIGAENPDEIYRNNVLATYRLLEAMRKAGVSRIVFTSTSTVYGEAKVI--PTPEDY--PTHPISLYGASK 142 (313)
T ss_dssp EEECCCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEECCGGGGCSCSSS--SBCTTS--CCCCCSHHHHHH
T ss_pred EEECCCCCChhhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCchHHhCcCCCC--CCCCCC--CCCCCCHHHHHH
Confidence 9999993 234567889999999999999999999999999999999999754433 344443 357889999999
Q ss_pred HHHHHHHHHHhCCCCceEEEEecCCcccCCCC-CChHHHHHHHHcC-CCeEEecCCCceeecccHHHHHHHHHHHHHHhc
Q 047227 164 AEGEALVIKANGTNGLLTCCIRPSSIFGPGDR-LLVPSLVAAARAG-KSKFIIGDGNNVYDFTYVANVAHAHICAERALA 241 (485)
Q Consensus 164 ~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~-~~~~~~~~~~~~g-~~~~~~g~g~~~~~~i~v~D~a~a~~~~~~~~~ 241 (485)
..+|.+++.++.+++++++++||+++|||+.. ..+..++..+..+ .++.++|++++.++|+|++|+|++++.+++
T Consensus 143 ~~~e~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dva~a~~~~~~--- 219 (313)
T 3ehe_A 143 LACEALIESYCHTFDMQAWIYRFANVIGRRSTHGVIYDFIMKLKRNPEELEILGNGEQNKSYIYISDCVDAMLFGLR--- 219 (313)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECSCEESTTCCCSHHHHHHHHHHHCTTEEEESTTSCCEECCEEHHHHHHHHHHHTT---
T ss_pred HHHHHHHHHHHHhcCCCEEEEeeccccCcCCCcChHHHHHHHHHcCCCceEEeCCCCeEEeEEEHHHHHHHHHHHhc---
Confidence 99999999998888999999999999999865 4566677666666 566788999999999999999999998865
Q ss_pred cccchhhccCCcEEEeeCCCCccHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCCCCCCCCHHHHHh
Q 047227 242 SEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELTYRLLGPYGMKVPQLTPSRVRL 321 (485)
Q Consensus 242 ~~~~~~~~~~g~~ynv~~~~~~t~~el~~~i~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 321 (485)
.. ..+++||+++++++++.|+++.+.+.+|.+.+....+... ..+ .
T Consensus 220 ~~------~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~--------------------~~~----~---- 265 (313)
T 3ehe_A 220 GD------ERVNIFNIGSEDQIKVKRIAEIVCEELGLSPRFRFTGGDR--------------------GWK----G---- 265 (313)
T ss_dssp CC------SSEEEEECCCSCCEEHHHHHHHHHHHTTCCCEEEEC------------------------------------
T ss_pred cC------CCCceEEECCCCCeeHHHHHHHHHHHhCCCCceEECCCcc--------------------CCc----c----
Confidence 11 4578999999999999999999999999875443322100 000 0
Q ss_pred hccceeeehhhHHhhcCCCCCCChHHHHHHHHHHHHHhHhc
Q 047227 322 LSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSYSHLRAE 362 (485)
Q Consensus 322 ~~~~~~~d~~ka~~~lG~~p~~~l~e~i~~~~~~~~~~~~~ 362 (485)
......+|++|+++ |||+|.++++|+++++++||++..+.
T Consensus 266 ~~~~~~~d~~k~~~-lG~~p~~~~~e~l~~~~~~~~~~~~~ 305 (313)
T 3ehe_A 266 DVPVMLLSIEKLKR-LGWKPRYNSEEAVRMAVRDLVEDLDE 305 (313)
T ss_dssp ----CCBCCHHHHH-HTCCCSCCHHHHHHHHHHHHHHHHHC
T ss_pred ccceeccCHHHHHH-cCCCCCCCHHHHHHHHHHHHHhCccc
Confidence 01134579999965 89999999999999999999998776
|
| >3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-44 Score=353.31 Aligned_cols=305 Identities=25% Similarity=0.305 Sum_probs=241.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCCCEE
Q 047227 8 RLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGAEVV 87 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~d~V 87 (485)
|+|||||||||||+++++.|+++| ++|++++|....... ....+++++.+|+.|.+ +.+++++ |+|
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~-----------~~~~~~~~~~~Dl~d~~-~~~~~~~-d~v 66 (312)
T 3ko8_A 1 MRIVVTGGAGFIGSHLVDKLVELG-YEVVVVDNLSSGRRE-----------FVNPSAELHVRDLKDYS-WGAGIKG-DVV 66 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT-CEEEEECCCSSCCGG-----------GSCTTSEEECCCTTSTT-TTTTCCC-SEE
T ss_pred CEEEEECCCChHHHHHHHHHHhCC-CEEEEEeCCCCCchh-----------hcCCCceEEECccccHH-HHhhcCC-CEE
Confidence 689999999999999999999999 599999886542111 12467899999999998 8888888 999
Q ss_pred EEcCCC---CCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCccccccCCCCcCCCCCCCCCCCCCCchHHHHHH
Q 047227 88 FHMAAP---NSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDFYSATKA 164 (485)
Q Consensus 88 ih~aa~---~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy~~~~~~~~~~~e~~~~~~~~~~~Y~~sK~ 164 (485)
||+|+. .....++...+++|+.++.+++++|++.+++||||+||.++|++.... +.+|+. +..|.+.|+.+|.
T Consensus 67 ih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~vyg~~~~~--~~~e~~--~~~p~~~Y~~sK~ 142 (312)
T 3ko8_A 67 FHFAANPEVRLSTTEPIVHFNENVVATFNVLEWARQTGVRTVVFASSSTVYGDADVI--PTPEEE--PYKPISVYGAAKA 142 (312)
T ss_dssp EECCSSCSSSGGGSCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEGGGGCSCSSS--SBCTTS--CCCCCSHHHHHHH
T ss_pred EECCCCCCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEeCcHHHhCCCCCC--CCCCCC--CCCCCChHHHHHH
Confidence 999993 234567888999999999999999999999999999999999754433 334443 3578899999999
Q ss_pred HHHHHHHHHhCCCCceEEEEecCCcccCCCC-CChHHHHHHHHcC-CCeEEecCCCceeecccHHHHHHHHHHHHHHhcc
Q 047227 165 EGEALVIKANGTNGLLTCCIRPSSIFGPGDR-LLVPSLVAAARAG-KSKFIIGDGNNVYDFTYVANVAHAHICAERALAS 242 (485)
Q Consensus 165 ~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~-~~~~~~~~~~~~g-~~~~~~g~g~~~~~~i~v~D~a~a~~~~~~~~~~ 242 (485)
.+|++++.++.+++++++++||+++|||+.. ..+..++..+..+ ..+.+++++++.++|+|++|+|++++.+++.+..
T Consensus 143 ~~e~~~~~~~~~~g~~~~~lrp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dva~a~~~~~~~~~~ 222 (312)
T 3ko8_A 143 AGEVMCATYARLFGVRCLAVRYANVVGPRLRHGVIYDFIMKLRRNPNVLEVLGDGTQRKSYLYVRDAVEATLAAWKKFEE 222 (312)
T ss_dssp HHHHHHHHHHHHHCCEEEEEEECEEECTTCCSSHHHHHHHHHHHCTTEEEEC----CEECEEEHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCEEEEeeccccCcCCCCChHHHHHHHHHhCCCCeEEcCCCCeEEeeEEHHHHHHHHHHHHHhccc
Confidence 9999999998878999999999999999865 4566677766666 5566889999999999999999999999875221
Q ss_pred ccchhhccCCcEEEeeCCCCccHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCCCCCCCCHHHHHhh
Q 047227 243 EVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELTYRLLGPYGMKVPQLTPSRVRLL 322 (485)
Q Consensus 243 ~~~~~~~~~g~~ynv~~~~~~t~~el~~~i~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 322 (485)
+...+++||+++++++++.|+++.+.+.+|.+.+....|.... . ......
T Consensus 223 -----~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~---------------------~----~~~~~~ 272 (312)
T 3ko8_A 223 -----MDAPFLALNVGNVDAVRVLDIAQIVAEVLGLRPEIRLVPSTPD---------------------G----RGWPGD 272 (312)
T ss_dssp -----SCCSEEEEEESCSSCEEHHHHHHHHHHHHTCCCEEEEC-----------------------------------CC
T ss_pred -----cCCCCcEEEEcCCCceeHHHHHHHHHHHhCCCCceeecCcccc---------------------c----cCCCCC
Confidence 1255789999999999999999999999998876555443210 0 000001
Q ss_pred ccceeeehhhHHhhcCCCCCCChHHHHHHHHHHHHHhH
Q 047227 323 SCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSYSHLR 360 (485)
Q Consensus 323 ~~~~~~d~~ka~~~lG~~p~~~l~e~i~~~~~~~~~~~ 360 (485)
.....+|++|+++.|||+|+++++|+++++++||++.+
T Consensus 273 ~~~~~~d~~k~~~~lG~~p~~~~~~~l~~~~~~~~~~~ 310 (312)
T 3ko8_A 273 VKYMTLAVTKLMKLTGWRPTMTSAEAVKKTAEDLAKEL 310 (312)
T ss_dssp CSEECBCCHHHHHHHCCCCSSCHHHHHHHHHHHHHHHH
T ss_pred ccccccCHHHHHHHhCCCCCCCHHHHHHHHHHHHHhhh
Confidence 12356899999999999999999999999999998754
|
| >3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-43 Score=352.98 Aligned_cols=310 Identities=19% Similarity=0.207 Sum_probs=244.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc--C
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ--G 83 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--~ 83 (485)
++|+||||||+||||+++++.|+++| ++|++++|........... +.. ....+++++.+|++|++++.++++ +
T Consensus 4 ~~~~vlVTGatG~iG~~l~~~L~~~G-~~V~~~~r~~~~~~~~~~~---~~~-~~~~~~~~~~~Dl~d~~~~~~~~~~~~ 78 (341)
T 3enk_A 4 TKGTILVTGGAGYIGSHTAVELLAHG-YDVVIADNLVNSKREAIAR---IEK-ITGKTPAFHETDVSDERALARIFDAHP 78 (341)
T ss_dssp SSCEEEEETTTSHHHHHHHHHHHHTT-CEEEEECCCSSSCTHHHHH---HHH-HHSCCCEEECCCTTCHHHHHHHHHHSC
T ss_pred CCcEEEEecCCcHHHHHHHHHHHHCC-CcEEEEecCCcchHHHHHH---HHh-hcCCCceEEEeecCCHHHHHHHHhccC
Confidence 35899999999999999999999999 6999998875422110000 111 124578999999999999999998 8
Q ss_pred CCEEEEcCCCCC---CCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCccccccCCCCcCCCCCCCCCCCCCCchHH
Q 047227 84 AEVVFHMAAPNS---SINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDFYS 160 (485)
Q Consensus 84 ~d~Vih~aa~~~---~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy~~~~~~~~~~~e~~~~~~~~~~~Y~ 160 (485)
+|+|||+|+... ...++...+++|+.++.+++++|++.++++|||+||.++|+.... .+.+|+.+ ..|.+.|+
T Consensus 79 ~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~SS~~~~g~~~~--~~~~e~~~--~~~~~~Y~ 154 (341)
T 3enk_A 79 ITAAIHFAALKAVGESVAKPIEYYRNNLDSLLSLLRVMRERAVKRIVFSSSATVYGVPER--SPIDETFP--LSATNPYG 154 (341)
T ss_dssp CCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGBCSCSS--SSBCTTSC--CBCSSHHH
T ss_pred CcEEEECccccccCccccChHHHHHHHHHHHHHHHHHHHhCCCCEEEEEecceEecCCCC--CCCCCCCC--CCCCChhH
Confidence 999999999543 334566889999999999999999999999999999999965433 33455443 56889999
Q ss_pred HHHHHHHHHHHHHhCCCC-ceEEEEecCCcccCCC------------CCChHHHHHHHHcC-CCeEEec------CCCce
Q 047227 161 ATKAEGEALVIKANGTNG-LLTCCIRPSSIFGPGD------------RLLVPSLVAAARAG-KSKFIIG------DGNNV 220 (485)
Q Consensus 161 ~sK~~~E~~~~~~~~~~g-~~~~ilRp~~v~Gp~~------------~~~~~~~~~~~~~g-~~~~~~g------~g~~~ 220 (485)
.+|..+|++++.++.+++ ++++++||+++|||+. ..+++.+....... .++.++| ++++.
T Consensus 155 ~sK~~~e~~~~~~~~~~~~~~~~~lRp~~v~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~ 234 (341)
T 3enk_A 155 QTKLMAEQILRDVEAADPSWRVATLRYFNPVGAHESGLIGEDPAGIPNNLMPYVAQVAVGKLEKLRVFGSDYPTPDGTGV 234 (341)
T ss_dssp HHHHHHHHHHHHHHHHCTTCEEEEEEECEEECCCTTSSCCCCCSSSCSSHHHHHHHHHHTSSSCEEEECSCSSSTTSSCE
T ss_pred HHHHHHHHHHHHHhhcCCCceEEEEeeccccCCccccccCCCcccCccchHHHHHHHHhcCCCceEEeCCccCCCCCCee
Confidence 999999999999887665 9999999999999964 22345444444332 5566777 88999
Q ss_pred eecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCCCccHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHH
Q 047227 221 YDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELT 300 (485)
Q Consensus 221 ~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~~t~~el~~~i~~~~g~~~~~~~~p~~~~~~~~~~~~~~ 300 (485)
++|+|++|+|++++.+++...+. ..+++||+++++++++.|+++.+.+.+|.+.+....|..
T Consensus 235 ~~~i~v~Dva~a~~~~~~~~~~~------~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~------------ 296 (341)
T 3enk_A 235 RDYIHVVDLARGHIAALDALERR------DASLTVNLGTGRGYSVLEVVRAFEKASGRAVPYELVARR------------ 296 (341)
T ss_dssp ECEEEHHHHHHHHHHHHHHHHHH------TSCEEEEESCSCCEEHHHHHHHHHHHHCSCCCEEEECCC------------
T ss_pred EeeEEHHHHHHHHHHHHHhhhcC------CcceEEEeCCCCceeHHHHHHHHHHHhCCCcceeeCCCC------------
Confidence 99999999999999998753222 568999999999999999999999999987665443321
Q ss_pred HHHhCCCCCCCCCCCHHHHHhhccceeeehhhHHhhcCCCCCCChHHHHHHHHHHHHHhHh
Q 047227 301 YRLLGPYGMKVPQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSYSHLRA 361 (485)
Q Consensus 301 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~d~~ka~~~lG~~p~~~l~e~i~~~~~~~~~~~~ 361 (485)
+ . ......+|++|+++.|||+|+++++|+++++++||+++.+
T Consensus 297 -----------~----~----~~~~~~~d~~k~~~~lG~~p~~~l~~~l~~~~~~~~~~~~ 338 (341)
T 3enk_A 297 -----------P----G----DVAECYANPAAAAETIGWKAERDLERMCADHWRWQENNPR 338 (341)
T ss_dssp -----------T----T----CCSEECBCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHSTT
T ss_pred -----------C----C----CccccccCHHHHHHHcCCCCCCCHHHHHHHHHHHHHhcCc
Confidence 0 0 0123567999999999999999999999999999987543
|
| >4b8w_A GDP-L-fucose synthase; oxidoreductase; HET: NAP GDP; 2.75A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-44 Score=352.90 Aligned_cols=295 Identities=19% Similarity=0.218 Sum_probs=238.4
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcC
Q 047227 4 EENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQG 83 (485)
Q Consensus 4 ~~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~ 83 (485)
.+++|+|||||||||||+++++.|+++|+ +... ...+++.+.+|++|++++.+++++
T Consensus 3 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~-------~~~~----------------~~~~~~~~~~D~~d~~~~~~~~~~ 59 (319)
T 4b8w_A 3 YFQSMRILVTGGSGLVGKAIQKVVADGAG-------LPGE----------------DWVFVSSKDADLTDTAQTRALFEK 59 (319)
T ss_dssp CCCCCEEEEETCSSHHHHHHHHHHHTTTC-------CTTC----------------EEEECCTTTCCTTSHHHHHHHHHH
T ss_pred cccCCeEEEECCCcHHHHHHHHHHHhcCC-------cccc----------------cccccCceecccCCHHHHHHHHhh
Confidence 45679999999999999999999999994 1100 012344567999999999999987
Q ss_pred --CCEEEEcCCCCC----CCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCccccccCCCCcCCCCCCCCC--CCCC
Q 047227 84 --AEVVFHMAAPNS----SINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVVFDGVHGIINGNEALPY--PPKH 155 (485)
Q Consensus 84 --~d~Vih~aa~~~----~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy~~~~~~~~~~~e~~~~--~~~~ 155 (485)
+|+|||+|+... ...++...+++|+.++.+++++|++.+++||||+||.++|++.... +.+|+.+. +..|
T Consensus 60 ~~~d~Vih~A~~~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~~v~~SS~~vyg~~~~~--~~~E~~~~~~~~~p 137 (319)
T 4b8w_A 60 VQPTHVIHLAAMVGGLFRNIKYNLDFWRKNVHMNDNVLHSAFEVGARKVVSCLSTCIFPDKTTY--PIDETMIHNGPPHN 137 (319)
T ss_dssp SCCSEEEECCCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECCGGGSCSSCCS--SBCGGGGGBSCCCS
T ss_pred cCCCEEEECceecccccccccCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEEcchhhcCCCCCC--CccccccccCCCCC
Confidence 999999999543 3457788999999999999999999999999999999999754433 33444321 3345
Q ss_pred Cc-hHHHHHHHHHHHHHHHhCCCCceEEEEecCCcccCCCC------CChHHHHHH----HHcCCCeEEecCCCceeecc
Q 047227 156 ND-FYSATKAEGEALVIKANGTNGLLTCCIRPSSIFGPGDR------LLVPSLVAA----ARAGKSKFIIGDGNNVYDFT 224 (485)
Q Consensus 156 ~~-~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~------~~~~~~~~~----~~~g~~~~~~g~g~~~~~~i 224 (485)
.+ +|+.+|..+|++++.++++.+++++++||+++|||+.+ .+++.++.. +..++++.++|++++.++|+
T Consensus 138 ~~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i 217 (319)
T 4b8w_A 138 SNFGYSYAKRMIDVQNRAYFQQYGCTFTAVIPTNVFGPHDNFNIEDGHVLPGLIHKVHLAKSSGSALTVWGTGNPRRQFI 217 (319)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECTTCCCCTTTSCHHHHHHHHHHHHHHHTCCEEEESCSCCEECEE
T ss_pred CcchHHHHHHHHHHHHHHHHHhhCCCEEEEeeccccCCCCCCCCccccccHHHHHHHHHHhccCCceEEeCCCCeeEEEE
Confidence 55 69999999999999998888999999999999999864 245666665 78899999999999999999
Q ss_pred cHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCCCccHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHh
Q 047227 225 YVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELTYRLL 304 (485)
Q Consensus 225 ~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~~t~~el~~~i~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~ 304 (485)
|++|+|++++.+++.. +...+++||+++++++|+.|+++.+.+.+|.+.+....|..
T Consensus 218 ~v~Dva~a~~~~~~~~-------~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~---------------- 274 (319)
T 4b8w_A 218 YSLDLAQLFIWVLREY-------NEVEPIILSVGEEDEVSIKEAAEAVVEAMDFHGEVTFDTTK---------------- 274 (319)
T ss_dssp EHHHHHHHHHHHHHHC-------CCSSCEEECCCGGGCEEHHHHHHHHHHHTTCCSCEEEETTS----------------
T ss_pred eHHHHHHHHHHHHhcc-------ccCCceEEEecCCCceeHHHHHHHHHHHhCCCCcEEeCCCC----------------
Confidence 9999999999998742 22457899999999999999999999999987654432210
Q ss_pred CCCCCCCCCCCHHHHHhhccceeeehhhHHhhcCCCCCCChHHHHHHHHHHHHHhHh
Q 047227 305 GPYGMKVPQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSYSHLRA 361 (485)
Q Consensus 305 ~~~~~~~p~~~~~~~~~~~~~~~~d~~ka~~~lG~~p~~~l~e~i~~~~~~~~~~~~ 361 (485)
+. ......+|++|+++.|||+|.++++|+++++++||++..+
T Consensus 275 -------~~--------~~~~~~~d~~k~~~~lg~~p~~~~~~~l~~~~~~~~~~~~ 316 (319)
T 4b8w_A 275 -------SD--------GQFKKTASNSKLRTYLPDFRFTPFKQAVKETCAWFTDNYE 316 (319)
T ss_dssp -------CC--------CCSCCCBCCHHHHHHCTTCCCCCHHHHHHHHHHHHHHSCS
T ss_pred -------Cc--------CcccccCCHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHh
Confidence 00 0113468999999999999999999999999999987543
|
| >3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-43 Score=354.81 Aligned_cols=308 Identities=21% Similarity=0.244 Sum_probs=246.9
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHh--cCCceEEEeecCCccccC---CccchhhhhhhhcCCCeEEEEecCCCHHHHH
Q 047227 4 EENERLCVVTGGRGFAARHLVEMLIR--YDMFSVRIADLSDSIALE---PHEEQGILGEALRSGRAHYVSFDLRHKAQVL 78 (485)
Q Consensus 4 ~~~~~~iLVtGgtG~iG~~l~~~Ll~--~G~~~V~~~~r~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~ 78 (485)
.+++|+||||||+||||+++++.|++ +| ++|++++|....... ..+... ........+++++.+|++|++++.
T Consensus 7 ~~~~~~vlVTGatG~IG~~l~~~L~~~~~g-~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~Dl~d~~~~~ 84 (362)
T 3sxp_A 7 ELENQTILITGGAGFVGSNLAFHFQENHPK-AKVVVLDKFRSNTLFSNNRPSSLG-HFKNLIGFKGEVIAADINNPLDLR 84 (362)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHHCTT-SEEEEEECCCCC-------CCCCC-CGGGGTTCCSEEEECCTTCHHHHH
T ss_pred hcCCCEEEEECCCCHHHHHHHHHHHhhCCC-CeEEEEECCCccccccccchhhhh-hhhhccccCceEEECCCCCHHHHH
Confidence 45678999999999999999999999 89 699999986541100 000000 011123457899999999999999
Q ss_pred HH-hcCCCEEEEcCCCCC-CCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCccccccCCCCcCCCCCCCCCCCCCC
Q 047227 79 QA-LQGAEVVFHMAAPNS-SINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVVFDGVHGIINGNEALPYPPKHN 156 (485)
Q Consensus 79 ~~-~~~~d~Vih~aa~~~-~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy~~~~~~~~~~~e~~~~~~~~~ 156 (485)
++ ..++|+|||+|+... +..++...+++|+.++.+++++|++.+++ |||+||.++|+.... +.+|+. +..|.
T Consensus 85 ~~~~~~~D~vih~A~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~~~-~V~~SS~~vyg~~~~---~~~E~~--~~~p~ 158 (362)
T 3sxp_A 85 RLEKLHFDYLFHQAAVSDTTMLNQELVMKTNYQAFLNLLEIARSKKAK-VIYASSAGVYGNTKA---PNVVGK--NESPE 158 (362)
T ss_dssp HHTTSCCSEEEECCCCCGGGCCCHHHHHHHHTHHHHHHHHHHHHTTCE-EEEEEEGGGGCSCCS---SBCTTS--CCCCS
T ss_pred HhhccCCCEEEECCccCCccccCHHHHHHHHHHHHHHHHHHHHHcCCc-EEEeCcHHHhCCCCC---CCCCCC--CCCCC
Confidence 99 788999999999433 45788899999999999999999999986 999999999975443 445544 36788
Q ss_pred chHHHHHHHHHHHHHHHhCCCCceEEEEecCCcccCCCC------CChHHHHHHHHcCCCeEEecCCCceeecccHHHHH
Q 047227 157 DFYSATKAEGEALVIKANGTNGLLTCCIRPSSIFGPGDR------LLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVA 230 (485)
Q Consensus 157 ~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~------~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~D~a 230 (485)
+.|+.+|..+|++++.++.+ ++++++||+++|||+.. ..++.++..+..++++.+++++++.++|+|++|+|
T Consensus 159 ~~Y~~sK~~~E~~~~~~~~~--~~~~~lR~~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dva 236 (362)
T 3sxp_A 159 NVYGFSKLCMDEFVLSHSND--NVQVGLRYFNVYGPREFYKEKTASMVLQLALGAMAFKEVKLFEFGEQLRDFVYIEDVI 236 (362)
T ss_dssp SHHHHHHHHHHHHHHHTTTT--SCEEEEEECSEESTTCGGGGGGSCHHHHHHHHHHTTSEEECSGGGCCEEECEEHHHHH
T ss_pred ChhHHHHHHHHHHHHHHhcc--CCEEEEEeCceeCcCCCCCCcchhHHHHHHHHHHhCCCeEEECCCCeEEccEEHHHHH
Confidence 99999999999999998765 89999999999999874 45788888899999888889999999999999999
Q ss_pred HHHHHHHHHhccccchhhccCCcEEEeeCCCCccHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCCC
Q 047227 231 HAHICAERALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELTYRLLGPYGMK 310 (485)
Q Consensus 231 ~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~~t~~el~~~i~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 310 (485)
++++.+++. + ..| +||+++++++++.|+++.+.+.+| +.+....|...
T Consensus 237 ~ai~~~~~~--------~-~~g-~~~i~~~~~~s~~e~~~~i~~~~g-~~~~~~~~~~~--------------------- 284 (362)
T 3sxp_A 237 QANVKAMKA--------Q-KSG-VYNVGYSQARSYNEIVSILKEHLG-DFKVTYIKNPY--------------------- 284 (362)
T ss_dssp HHHHHHTTC--------S-SCE-EEEESCSCEEEHHHHHHHHHHHHC-CCEEECCC------------------------
T ss_pred HHHHHHHhc--------C-CCC-EEEeCCCCCccHHHHHHHHHHHcC-CCceEECCCCC---------------------
Confidence 999988652 1 345 999999999999999999999999 65554444320
Q ss_pred CCCCCHHHHHhhccceeeehhhHHhhcCCCCCCChHHHHHHHHHHHHHhHhc
Q 047227 311 VPQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSYSHLRAE 362 (485)
Q Consensus 311 ~p~~~~~~~~~~~~~~~~d~~ka~~~lG~~p~~~l~e~i~~~~~~~~~~~~~ 362 (485)
........+|++|+++.|||+|.++++|+++++++||++....
T Consensus 285 ---------~~~~~~~~~d~~k~~~~lG~~p~~~l~e~l~~~~~~~~~~~~~ 327 (362)
T 3sxp_A 285 ---------AFFQKHTQAHIEPTILDLDYTPLYDLESGIKDYLPHIHAIFKG 327 (362)
T ss_dssp -------------CCCCBCCHHHHHHHCCCCCCCHHHHHHHHHHHHTCC---
T ss_pred ---------cCcccceecCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhhc
Confidence 1112345789999999999999999999999999999876554
|
| >2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-43 Score=353.31 Aligned_cols=302 Identities=21% Similarity=0.226 Sum_probs=248.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCCC
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGAE 85 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~d 85 (485)
++|+|||||||||||+++++.|+++| ++|++++|....... ....+++++.+|++|.+++.++++++|
T Consensus 28 ~~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~-----------~~~~~v~~~~~Dl~d~~~~~~~~~~~d 95 (379)
T 2c5a_A 28 ENLKISITGAGGFIASHIARRLKHEG-HYVIASDWKKNEHMT-----------EDMFCDEFHLVDLRVMENCLKVTEGVD 95 (379)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSCCSSSC-----------GGGTCSEEEECCTTSHHHHHHHHTTCS
T ss_pred cCCeEEEECCccHHHHHHHHHHHHCC-CeEEEEECCCccchh-----------hccCCceEEECCCCCHHHHHHHhCCCC
Confidence 46899999999999999999999999 699999987542111 113478999999999999999999999
Q ss_pred EEEEcCCCCCC----CCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCccccccCCCC---cCCCCCCCCCCCCCCch
Q 047227 86 VVFHMAAPNSS----INNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVVFDGVHG---IINGNEALPYPPKHNDF 158 (485)
Q Consensus 86 ~Vih~aa~~~~----~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy~~~~~~---~~~~~e~~~~~~~~~~~ 158 (485)
+|||+|+.... ..++...+++|+.++.+++++|++.+++||||+||.++|+..... ..+.+|+.+.+..|.+.
T Consensus 96 ~Vih~A~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~a~~~~~~~~~V~~SS~~v~~~~~~~~~~~~~~~E~~~~~~~~~~~ 175 (379)
T 2c5a_A 96 HVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFFYASSACIYPEFKQLETTNVSLKESDAWPAEPQDA 175 (379)
T ss_dssp EEEECCCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEEGGGSCGGGSSSSSSCEECGGGGSSBCCSSH
T ss_pred EEEECceecCcccccccCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeehheeCCCCCCCccCCCcCcccCCCCCCCCh
Confidence 99999995432 457888999999999999999999999999999999999743221 11234443334567889
Q ss_pred HHHHHHHHHHHHHHHhCCCCceEEEEecCCcccCCCCC------ChHHHHHHHHcCCC-eEEecCCCceeecccHHHHHH
Q 047227 159 YSATKAEGEALVIKANGTNGLLTCCIRPSSIFGPGDRL------LVPSLVAAARAGKS-KFIIGDGNNVYDFTYVANVAH 231 (485)
Q Consensus 159 Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~~------~~~~~~~~~~~g~~-~~~~g~g~~~~~~i~v~D~a~ 231 (485)
|+.+|..+|++++.++.+++++++++||+++|||+... .++.++..+..+++ +.++|++++.++|+|++|+|+
T Consensus 176 Y~~sK~~~E~~~~~~~~~~gi~~~ilrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~i~v~Dva~ 255 (379)
T 2c5a_A 176 FGLEKLATEELCKHYNKDFGIECRIGRFHNIYGPFGTWKGGREKAPAAFCRKAQTSTDRFEMWGDGLQTRSFTFIDECVE 255 (379)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCCSSSCCCHHHHHHHHHHHCSSCEEEESCSCCEECCEEHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHCCCEEEEEeCceeCcCCCcccccccHHHHHHHHHHhCCCceEEeCCCCeeEEEEEHHHHHH
Confidence 99999999999999877779999999999999997642 56777877777776 778899999999999999999
Q ss_pred HHHHHHHHhccccchhhccCCcEEEeeCCCCccHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCCCC
Q 047227 232 AHICAERALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELTYRLLGPYGMKV 311 (485)
Q Consensus 232 a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~~t~~el~~~i~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (485)
+++.+++. ..+++||+++++++++.|+++.+.+.+|.+.+...+|.+ .
T Consensus 256 ai~~~l~~----------~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~p~~---------------------~- 303 (379)
T 2c5a_A 256 GVLRLTKS----------DFREPVNIGSDEMVSMNEMAEMVLSFEEKKLPIHHIPGP---------------------E- 303 (379)
T ss_dssp HHHHHHHS----------SCCSCEEECCCCCEEHHHHHHHHHHTTTCCCCEEEECCC---------------------C-
T ss_pred HHHHHhhc----------cCCCeEEeCCCCccCHHHHHHHHHHHhCCCCceeeCCCC---------------------C-
Confidence 99998762 246799999999999999999999999987665444321 0
Q ss_pred CCCCHHHHHhhccceeeehhhHHhhcCCCCCCChHHHHHHHHHHHHHhHh
Q 047227 312 PQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSYSHLRA 361 (485)
Q Consensus 312 p~~~~~~~~~~~~~~~~d~~ka~~~lG~~p~~~l~e~i~~~~~~~~~~~~ 361 (485)
......+|++|+++.|||+|.++++|+++++++||++...
T Consensus 304 ----------~~~~~~~d~~k~~~~lG~~p~~~l~e~l~~~~~~~~~~~~ 343 (379)
T 2c5a_A 304 ----------GVRGRNSDNNLIKEKLGWAPNMRLKEGLRITYFWIKEQIE 343 (379)
T ss_dssp ----------CCSBCEECCHHHHHHHSCCCCCCHHHHHHHHHHHHHHHHH
T ss_pred ----------CcccccCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhHh
Confidence 0123468999999999999999999999999999987654
|
| >2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-42 Score=343.99 Aligned_cols=301 Identities=21% Similarity=0.235 Sum_probs=240.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc--CC
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ--GA 84 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--~~ 84 (485)
||+||||||+||||+++++.|+++| ++|++++|...... ..+ ..+++++.+|++|.+++.++++ ++
T Consensus 1 M~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~----------~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~ 68 (330)
T 2c20_A 1 MNSILICGGAGYIGSHAVKKLVDEG-LSVVVVDNLQTGHE----------DAI-TEGAKFYNGDLRDKAFLRDVFTQENI 68 (330)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCSSCCG----------GGS-CTTSEEEECCTTCHHHHHHHHHHSCE
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCC-CEEEEEeCCCcCch----------hhc-CCCcEEEECCCCCHHHHHHHHhhcCC
Confidence 4799999999999999999999999 69999988643211 111 1378999999999999999998 89
Q ss_pred CEEEEcCCCCC---CCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCccccccCCCCcCCCCCCCCCCCCCCchHHH
Q 047227 85 EVVFHMAAPNS---SINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDFYSA 161 (485)
Q Consensus 85 d~Vih~aa~~~---~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy~~~~~~~~~~~e~~~~~~~~~~~Y~~ 161 (485)
|+|||+|+... +..++...+++|+.++.+++++|++.+++||||+||.++|+.... .+.+|+.+ ..|.+.|+.
T Consensus 69 d~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~Ss~~~~~~~~~--~~~~E~~~--~~~~~~Y~~ 144 (330)
T 2c20_A 69 EAVMHFAADSLVGVSMEKPLQYYNNNVYGALCLLEVMDEFKVDKFIFSSTAATYGEVDV--DLITEETM--TNPTNTYGE 144 (330)
T ss_dssp EEEEECCCCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECCGGGGCSCSS--SSBCTTSC--CCCSSHHHH
T ss_pred CEEEECCcccCccccccCHHHHHHHHhHHHHHHHHHHHHcCCCEEEEeCCceeeCCCCC--CCCCcCCC--CCCCChHHH
Confidence 99999999543 234677889999999999999999999999999999999975332 23455543 467899999
Q ss_pred HHHHHHHHHHHHhCCCCceEEEEecCCcccCCC-----------CCChHHHHHHHHc-CCCeEEec------CCCceeec
Q 047227 162 TKAEGEALVIKANGTNGLLTCCIRPSSIFGPGD-----------RLLVPSLVAAARA-GKSKFIIG------DGNNVYDF 223 (485)
Q Consensus 162 sK~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~-----------~~~~~~~~~~~~~-g~~~~~~g------~g~~~~~~ 223 (485)
+|..+|++++.++.+++++++++||+++|||+. ..+++.+...+.. +..+.++| ++++.++|
T Consensus 145 sK~~~e~~~~~~~~~~~~~~~ilrp~~v~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~ 224 (330)
T 2c20_A 145 TKLAIEKMLHWYSQASNLRYKIFRYFNVAGATPNGIIGEDHRPETHLIPLVLQVALGQREKIMMFGDDYNTPDGTCIRDY 224 (330)
T ss_dssp HHHHHHHHHHHHHHTSSCEEEEEECSEEECCCTTCSSCCCCSSCCSHHHHHHHHHTTSSSCEEEECSCCSSSSSSCEECE
T ss_pred HHHHHHHHHHHHHHHhCCcEEEEecCcccCCCCcCccccccccccchHHHHHHHHhhcCCCeEEeCCccccCCCceeEee
Confidence 999999999999888899999999999999963 1245555554443 34567776 67889999
Q ss_pred ccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCCCccHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHH
Q 047227 224 TYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELTYRL 303 (485)
Q Consensus 224 i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~~t~~el~~~i~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~ 303 (485)
+|++|+|++++.+++..... ..+++||+++++++|+.|+++.+.+.+|.+.+....|..
T Consensus 225 v~v~Dva~a~~~~~~~~~~~------~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~--------------- 283 (330)
T 2c20_A 225 IHVEDLVAAHFLGLKDLQNG------GESDFYNLGNGNGFSVKEIVDAVREVTNHEIPAEVAPRR--------------- 283 (330)
T ss_dssp EEHHHHHHHHHHHHHHHHTT------CCCEEEECCCTTCBCHHHHHHHHHHHTTSCCCEEEECCC---------------
T ss_pred EeHHHHHHHHHHHHhccccC------CCCCeEEeCCCCCccHHHHHHHHHHHhCCCCceeeCCCC---------------
Confidence 99999999999988742211 246899999999999999999999999987654433210
Q ss_pred hCCCCCCCCCCCHHHHHhhccceeeehhhHHhhcCCCCCC-ChHHHHHHHHHHHHHhH
Q 047227 304 LGPYGMKVPQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIV-PLEEGIKRTVDSYSHLR 360 (485)
Q Consensus 304 ~~~~~~~~p~~~~~~~~~~~~~~~~d~~ka~~~lG~~p~~-~l~e~i~~~~~~~~~~~ 360 (485)
. .. .....+|++|+++.|||+|.+ +++|+++++++||++..
T Consensus 284 ----~-~~-----------~~~~~~d~~k~~~~lG~~p~~~~l~~~l~~~~~~~~~~~ 325 (330)
T 2c20_A 284 ----A-GD-----------PARLVASSQKAKEKLGWDPRYVNVKTIIEHAWNWHQKQP 325 (330)
T ss_dssp ----S-SC-----------CSEECBCCHHHHHHHCCCCSCCCHHHHHHHHHHHHHHCS
T ss_pred ----C-Cc-----------ccccccCHHHHHHHhCCCCccCCHHHHHHHHHHHHHHhh
Confidence 0 00 113567999999999999998 99999999999998754
|
| >1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-43 Score=347.88 Aligned_cols=310 Identities=24% Similarity=0.300 Sum_probs=247.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhh---cCCCeEEEEecCCCHHHHHHHhc
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEAL---RSGRAHYVSFDLRHKAQVLQALQ 82 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~Dl~d~~~l~~~~~ 82 (485)
.+|+|||||||||||+++++.|+++| ++|++++|...... .....+...+ ...+++++.+|++|.+++.++++
T Consensus 26 ~~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~ 101 (352)
T 1sb8_A 26 QPKVWLITGVAGFIGSNLLETLLKLD-QKVVGLDNFATGHQ---RNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNACA 101 (352)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCSSCCH---HHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHHHT
T ss_pred cCCeEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCCCccch---hhHHHHhhhcccccCCceEEEECCCCCHHHHHHHhc
Confidence 56899999999999999999999999 59999998653110 0000011111 12579999999999999999999
Q ss_pred CCCEEEEcCCCCC---CCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCccccccCCCCcCCCCCCCCCCCCCCchH
Q 047227 83 GAEVVFHMAAPNS---SINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDFY 159 (485)
Q Consensus 83 ~~d~Vih~aa~~~---~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy~~~~~~~~~~~e~~~~~~~~~~~Y 159 (485)
++|+|||+|+... +..++...+++|+.++.+++++|++.+++||||+||.++|+..... +.+|+.+ ..|.+.|
T Consensus 102 ~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~SS~~~~~~~~~~--~~~E~~~--~~~~~~Y 177 (352)
T 1sb8_A 102 GVDYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAKVQSFTYAASSSTYGDHPGL--PKVEDTI--GKPLSPY 177 (352)
T ss_dssp TCSEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEGGGGTTCCCS--SBCTTCC--CCCCSHH
T ss_pred CCCEEEECCcccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccHHhcCCCCCC--CCCCCCC--CCCCChh
Confidence 9999999999543 2346778899999999999999999999999999999999754332 3445443 4678899
Q ss_pred HHHHHHHHHHHHHHhCCCCceEEEEecCCcccCCCC------CChHHHHHHHHcCCCeEEecCCCceeecccHHHHHHHH
Q 047227 160 SATKAEGEALVIKANGTNGLLTCCIRPSSIFGPGDR------LLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAH 233 (485)
Q Consensus 160 ~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~------~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~D~a~a~ 233 (485)
+.+|..+|.+++.++.+++++++++||+++|||+.. .+++.++..+..++++.++|++++.++|+|++|+|+++
T Consensus 178 ~~sK~~~e~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~i~v~Dva~a~ 257 (352)
T 1sb8_A 178 AVTKYVNELYADVFSRCYGFSTIGLRYFNVFGRRQDPNGAYAAVIPKWTSSMIQGDDVYINGDGETSRDFCYIENTVQAN 257 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCCEEEEECCEECTTCCCCSTTCCHHHHHHHHHHHTCCCEEESSSCCEECCEEHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEEECceeCcCCCCCcchhhHHHHHHHHHHCCCCcEEeCCCCceEeeEEHHHHHHHH
Confidence 999999999999987777999999999999999864 34677788888898888899999999999999999999
Q ss_pred HHHHHHhccccchhhccCCcEEEeeCCCCccHHHHHHHHHHHc---CCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCCC
Q 047227 234 ICAERALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGL---GYQRPRIKIPAFVMMPIAHMVELTYRLLGPYGMK 310 (485)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~g~~ynv~~~~~~t~~el~~~i~~~~---g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 310 (485)
+.++.. .+...+++||+++++++|+.|+++.+.+.+ |.+.+.. |.. . .
T Consensus 258 ~~~~~~-------~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~~~~g~~~~~~--~~~----------------~----~ 308 (352)
T 1sb8_A 258 LLAATA-------GLDARNQVYNIAVGGRTSLNQLFFALRDGLAENGVSYHRE--PVY----------------R----D 308 (352)
T ss_dssp HHHHTC-------CGGGCSEEEEESCSCCEEHHHHHHHHHHHHHHTTCCCCCC--CEE----------------E----C
T ss_pred HHHHhc-------cccCCCceEEeCCCCCccHHHHHHHHHHHHHhcCCCCCCC--cee----------------c----C
Confidence 988652 112568899999999999999999999999 8765432 100 0 0
Q ss_pred CCCCCHHHHHhhccceeeehhhHHhhcCCCCCCChHHHHHHHHHHHHHh
Q 047227 311 VPQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSYSHL 359 (485)
Q Consensus 311 ~p~~~~~~~~~~~~~~~~d~~ka~~~lG~~p~~~l~e~i~~~~~~~~~~ 359 (485)
.. +. ......+|++|++++|||+|+++++|+++++++||++.
T Consensus 309 ~~---~~----~~~~~~~d~~k~~~~lG~~p~~~~~e~l~~~~~~~~~~ 350 (352)
T 1sb8_A 309 FR---EG----DVRHSLADISKAAKLLGYAPKYDVSAGVALAMPWYIMF 350 (352)
T ss_dssp CC---TT----CCSBCCBCCHHHHHHTCCCCCCCHHHHHHHHHHHHHHH
T ss_pred CC---cc----chhhccCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHh
Confidence 00 00 01234679999999999999999999999999999764
|
| >2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-42 Score=341.33 Aligned_cols=297 Identities=21% Similarity=0.220 Sum_probs=242.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcC--
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQG-- 83 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~-- 83 (485)
++|+||||||+||||+++++.|+++| ++|++++|.... . . + +++++.+|++|++++.+++++
T Consensus 11 ~~~~vlVTGatG~iG~~l~~~L~~~G-~~V~~~~r~~~~--~---~-------l---~~~~~~~Dl~d~~~~~~~~~~~~ 74 (321)
T 2pk3_A 11 GSMRALITGVAGFVGKYLANHLTEQN-VEVFGTSRNNEA--K---L-------P---NVEMISLDIMDSQRVKKVISDIK 74 (321)
T ss_dssp --CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCTTC--C---C-------T---TEEEEECCTTCHHHHHHHHHHHC
T ss_pred CcceEEEECCCChHHHHHHHHHHHCC-CEEEEEecCCcc--c---c-------c---eeeEEECCCCCHHHHHHHHHhcC
Confidence 46899999999999999999999999 599999987542 0 0 1 688999999999999999986
Q ss_pred CCEEEEcCCCCC---CCCchhhhHHHHHHHHHHHHHHHHhc-CCCEEEEecCccccccCCCCcCCCCCCCCCCCCCCchH
Q 047227 84 AEVVFHMAAPNS---SINNHKLHHSVNVEGTKNVIDACAEL-KVKRLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDFY 159 (485)
Q Consensus 84 ~d~Vih~aa~~~---~~~~~~~~~~~nv~~t~~ll~a~~~~-~v~r~V~~SS~~vy~~~~~~~~~~~e~~~~~~~~~~~Y 159 (485)
+|+|||+|+... ...++...+++|+.++.+++++|++. +++||||+||.++|+.......+.+|+.+ ..|.+.|
T Consensus 75 ~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~SS~~v~g~~~~~~~~~~E~~~--~~~~~~Y 152 (321)
T 2pk3_A 75 PDYIFHLAAKSSVKDSWLNKKGTFSTNVFGTLHVLDAVRDSNLDCRILTIGSSEEYGMILPEESPVSEENQ--LRPMSPY 152 (321)
T ss_dssp CSEEEECCSCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEEEEGGGTBSCCGGGCSBCTTSC--CBCCSHH
T ss_pred CCEEEEcCcccchhhhhhcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEccHHhcCCCCCCCCCCCCCCC--CCCCCcc
Confidence 999999999543 23467889999999999999999887 58999999999999754112223455443 4678899
Q ss_pred HHHHHHHHHHHHHHhCCCCceEEEEecCCcccCCCCC--ChHHHHHHHHc---C--CCeEEecCCCceeecccHHHHHHH
Q 047227 160 SATKAEGEALVIKANGTNGLLTCCIRPSSIFGPGDRL--LVPSLVAAARA---G--KSKFIIGDGNNVYDFTYVANVAHA 232 (485)
Q Consensus 160 ~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~~--~~~~~~~~~~~---g--~~~~~~g~g~~~~~~i~v~D~a~a 232 (485)
+.+|..+|.+++.++.++|++++++||+++|||+... .++.++..+.. | +++.+++++++.++|+|++|+|++
T Consensus 153 ~~sK~~~E~~~~~~~~~~gi~~~ilrp~~v~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~v~v~Dva~a 232 (321)
T 2pk3_A 153 GVSKASVGMLARQYVKAYGMDIIHTRTFNHIGPGQSLGFVTQDFAKQIVDIEMEKQEPIIKVGNLEAVRDFTDVRDIVQA 232 (321)
T ss_dssp HHHHHHHHHHHHHHHHHHCCEEEEEEECEEECTTCCTTSHHHHHHHHHHHHHTTSSCSEEEESCSSCEEEEEEHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEEeCcccCcCCCCCchHHHHHHHHHHHhcCCCCCeEEeCCCCcEEeeEEHHHHHHH
Confidence 9999999999999887779999999999999998753 46667666666 7 577888999999999999999999
Q ss_pred HHHHHHHhccccchhhccCCcEEEeeCCCCccHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCCCCC
Q 047227 233 HICAERALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELTYRLLGPYGMKVP 312 (485)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~~t~~el~~~i~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p 312 (485)
++.+++. + ..|++||+++++++++.|+++.+.+.+|.+.+....|.. ..+
T Consensus 233 ~~~~~~~--------~-~~g~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~p~~---------------------~~~ 282 (321)
T 2pk3_A 233 YWLLSQY--------G-KTGDVYNVCSGIGTRIQDVLDLLLAMANVKIDTELNPLQ---------------------LRP 282 (321)
T ss_dssp HHHHHHH--------C-CTTCEEEESCSCEEEHHHHHHHHHHHSSSCCEEEECGGG---------------------CCS
T ss_pred HHHHHhC--------C-CCCCeEEeCCCCCeeHHHHHHHHHHHhCCCCceeecccc---------------------CCC
Confidence 9998773 1 357899999999999999999999999987554443321 000
Q ss_pred CCCHHHHHhhccceeeehhhHHhhcCCCCCCChHHHHHHHHHHHHH
Q 047227 313 QLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSYSH 358 (485)
Q Consensus 313 ~~~~~~~~~~~~~~~~d~~ka~~~lG~~p~~~l~e~i~~~~~~~~~ 358 (485)
. ......+|++|+++.|||+|.++++|+++++++||++
T Consensus 283 ----~----~~~~~~~d~~k~~~~lG~~p~~~~~e~l~~~~~~~~~ 320 (321)
T 2pk3_A 283 ----S----EVPTLIGSNKRLKDSTGWKPRIPLEKSLFEILQSYRQ 320 (321)
T ss_dssp ----S----CCSBCCBCCHHHHHHHCCCCCSCHHHHHHHHHHHHHT
T ss_pred ----c----ccchhccCHHHHHHHcCCCcCCCHHHHHHHHHHHHhc
Confidence 0 0124568999999999999999999999999999975
|
| >2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-42 Score=339.36 Aligned_cols=307 Identities=24% Similarity=0.268 Sum_probs=243.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcC-CceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCCC
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYD-MFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGAE 85 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G-~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~d 85 (485)
+|+||||||+||||+++++.|+++| .++|++++|...... ... +.......+++++.+|++|++++.+++.++|
T Consensus 3 ~m~vlVTGatG~iG~~l~~~L~~~g~~~~V~~~~r~~~~~~--~~~---~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d 77 (336)
T 2hun_A 3 SMKLLVTGGMGFIGSNFIRYILEKHPDWEVINIDKLGYGSN--PAN---LKDLEDDPRYTFVKGDVADYELVKELVRKVD 77 (336)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCC--GGG---GTTTTTCTTEEEEECCTTCHHHHHHHHHTCS
T ss_pred CCeEEEECCCchHHHHHHHHHHHhCCCCEEEEEecCcccCc--hhH---HhhhccCCceEEEEcCCCCHHHHHHHhhCCC
Confidence 4799999999999999999999997 258999988642110 000 1111124579999999999999999999999
Q ss_pred EEEEcCCCCC---CCCchhhhHHHHHHHHHHHHHHHHhcCC-CEEEEecCccccccCCCCcCCCCCCCCCCCCCCchHHH
Q 047227 86 VVFHMAAPNS---SINNHKLHHSVNVEGTKNVIDACAELKV-KRLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDFYSA 161 (485)
Q Consensus 86 ~Vih~aa~~~---~~~~~~~~~~~nv~~t~~ll~a~~~~~v-~r~V~~SS~~vy~~~~~~~~~~~e~~~~~~~~~~~Y~~ 161 (485)
+|||+|+... +..++..++++|+.++.+++++|++.+. +||||+||.++|+..... +.+|+.+ ..+.+.|+.
T Consensus 78 ~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~SS~~vyg~~~~~--~~~E~~~--~~~~~~Y~~ 153 (336)
T 2hun_A 78 GVVHLAAESHVDRSISSPEIFLHSNVIGTYTLLESIRRENPEVRFVHVSTDEVYGDILKG--SFTENDR--LMPSSPYSA 153 (336)
T ss_dssp EEEECCCCCCHHHHHHCTHHHHHHHHHHHHHHHHHHHHHCTTSEEEEEEEGGGGCCCSSS--CBCTTBC--CCCCSHHHH
T ss_pred EEEECCCCcChhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEeccHHHHCCCCCC--CcCCCCC--CCCCCccHH
Confidence 9999999543 2346778899999999999999999875 799999999999754322 3344443 467889999
Q ss_pred HHHHHHHHHHHHhCCCCceEEEEecCCcccCCCC--CChHHHHHHHHcCCCeEEecCCCceeecccHHHHHHHHHHHHHH
Q 047227 162 TKAEGEALVIKANGTNGLLTCCIRPSSIFGPGDR--LLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICAERA 239 (485)
Q Consensus 162 sK~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~--~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~D~a~a~~~~~~~ 239 (485)
+|..+|.+++.++.+++++++++||+++|||+.. .+++.++..+..++++.+++++++.++|+|++|+|++++.+++.
T Consensus 154 sK~~~e~~~~~~~~~~~~~~~ilrp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~~~~~~~~~ 233 (336)
T 2hun_A 154 TKAASDMLVLGWTRTYNLNASITRCTNNYGPYQFPEKLIPKTIIRASLGLKIPIYGTGKNVRDWLYVEDHVRAIELVLLK 233 (336)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEEECEEESTTCCTTSHHHHHHHHHHTTCCEEEETC---CEEEEEHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEeeeeeeCcCCCcCchHHHHHHHHHcCCCceEeCCCCceeeeEEHHHHHHHHHHHHhC
Confidence 9999999999988778999999999999999864 45677888888898888899999999999999999999988763
Q ss_pred hccccchhhccCCcEEEeeCCCCccHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCCCCCCCCHHHH
Q 047227 240 LASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELTYRLLGPYGMKVPQLTPSRV 319 (485)
Q Consensus 240 ~~~~~~~~~~~~g~~ynv~~~~~~t~~el~~~i~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 319 (485)
. ..|++||+++++++++.|+++.+.+.+|.+.+.+.... ..+.
T Consensus 234 --------~-~~g~~~~v~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~----------------------~~~~------ 276 (336)
T 2hun_A 234 --------G-ESREIYNISAGEEKTNLEVVKIILRLMGKGEELIELVE----------------------DRPG------ 276 (336)
T ss_dssp --------C-CTTCEEEECCSCEECHHHHHHHHHHHTTCCSTTEEEEC----------------------CCTT------
T ss_pred --------C-CCCCEEEeCCCCcccHHHHHHHHHHHhCCCcccccccC----------------------CCCC------
Confidence 1 35789999999999999999999999998654221100 0000
Q ss_pred HhhccceeeehhhHHhhcCCCCCCChHHHHHHHHHHHHHhHh
Q 047227 320 RLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSYSHLRA 361 (485)
Q Consensus 320 ~~~~~~~~~d~~ka~~~lG~~p~~~l~e~i~~~~~~~~~~~~ 361 (485)
......+|++|++++|||+|.++++|+++++++||++...
T Consensus 277 --~~~~~~~d~~k~~~~lG~~p~~~~~~~l~~~~~~~~~~~~ 316 (336)
T 2hun_A 277 --HDLRYSLDSWKITRDLKWRPKYTFDEGIKKTIDWYLKNEW 316 (336)
T ss_dssp --CCCCCCBCCHHHHHHHCCCCSSCHHHHHHHHHHHHHHTHH
T ss_pred --chhhhcCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCcc
Confidence 0113457999999999999999999999999999987643
|
| >1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-42 Score=340.42 Aligned_cols=311 Identities=19% Similarity=0.206 Sum_probs=241.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhh--hcCCCeEEEEecCCCHHHHHHHhc--
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEA--LRSGRAHYVSFDLRHKAQVLQALQ-- 82 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~Dl~d~~~l~~~~~-- 82 (485)
+|+||||||+||||+++++.|+++| ++|++++|......+........... ....+++++.+|++|++++.++++
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 80 (348)
T 1ek6_A 2 AEKVLVTGGAGYIGSHTVLELLEAG-YLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFEEMDILDQGALQRLFKKY 80 (348)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHTT-CCEEEEECSSSSCBCSSSSBHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHHHC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEecCCcccccccccHHHHHHHHhccCCceEEEECCCCCHHHHHHHHHhc
Confidence 4799999999999999999999999 58999988643200000000001111 123578999999999999999998
Q ss_pred CCCEEEEcCCCCC---CCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCccccccCCCCcCCCCCCCCCCCCC-Cch
Q 047227 83 GAEVVFHMAAPNS---SINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVVFDGVHGIINGNEALPYPPKH-NDF 158 (485)
Q Consensus 83 ~~d~Vih~aa~~~---~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy~~~~~~~~~~~e~~~~~~~~-~~~ 158 (485)
++|+|||+|+... ...++...+++|+.++.+++++|++.++++|||+||.++|+.... .+.+|+.+ ..| .+.
T Consensus 81 ~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~SS~~~~g~~~~--~~~~E~~~--~~p~~~~ 156 (348)
T 1ek6_A 81 SFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHGVKNLVFSSSATVYGNPQY--LPLDEAHP--TGGCTNP 156 (348)
T ss_dssp CEEEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGGCSCSS--SSBCTTSC--CCCCSSH
T ss_pred CCCEEEECCCCcCccchhhchHHHHHHHHHHHHHHHHHHHHhCCCEEEEECcHHHhCCCCC--CCcCCCCC--CCCCCCc
Confidence 8999999999543 234677889999999999999999999999999999999975432 33455443 345 789
Q ss_pred HHHHHHHHHHHHHHHhCC-CCceEEEEecCCcccCCC------------CCChHHHHHHHH-cCCCeEEec------CCC
Q 047227 159 YSATKAEGEALVIKANGT-NGLLTCCIRPSSIFGPGD------------RLLVPSLVAAAR-AGKSKFIIG------DGN 218 (485)
Q Consensus 159 Y~~sK~~~E~~~~~~~~~-~g~~~~ilRp~~v~Gp~~------------~~~~~~~~~~~~-~g~~~~~~g------~g~ 218 (485)
|+.+|..+|.+++.++.+ .+++++++||+++|||+. ..+++.+...+. .++++.++| +++
T Consensus 157 Y~~sK~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~ 236 (348)
T 1ek6_A 157 YGKSKFFIEEMIRDLCQADKTWNAVLLRYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDYDTEDGT 236 (348)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCEEEEEEECEEECCCTTSSCCCCCSSSCCSHHHHHHHHHHTSSSCEEEECSCSSSSSSS
T ss_pred hHHHHHHHHHHHHHHHhcCCCcceEEEeeccccCCCcccccCcCcccchhhHHHHHHHHHHhcCCCeEEeCCcccCCCCc
Confidence 999999999999998765 239999999999999953 234566666666 677778877 678
Q ss_pred ceeecccHHHHHHHHHHHHHHhccccchhhccCC-cEEEeeCCCCccHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHH
Q 047227 219 NVYDFTYVANVAHAHICAERALASEVTVAEKAAG-QAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMV 297 (485)
Q Consensus 219 ~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g-~~ynv~~~~~~t~~el~~~i~~~~g~~~~~~~~p~~~~~~~~~~~ 297 (485)
+.++|+|++|+|++++.+++... ...+ ++||+++++++|+.|+++.+.+.+|.+.+....|..
T Consensus 237 ~~~~~i~v~Dva~a~~~~~~~~~-------~~~g~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~--------- 300 (348)
T 1ek6_A 237 GVRDYIHVVDLAKGHIAALRKLK-------EQCGCRIYNLGTGTGYSVLQMVQAMEKASGKKIPYKVVARR--------- 300 (348)
T ss_dssp CEECEEEHHHHHHHHHHHHHHHT-------TTCCEEEEEECCSCCEEHHHHHHHHHHHHCSCCCEEEECCC---------
T ss_pred eEEeeEEHHHHHHHHHHHHhccc-------ccCCceEEEeCCCCCccHHHHHHHHHHHhCCCCceeeCCCC---------
Confidence 89999999999999999887421 1234 899999999999999999999999987654433210
Q ss_pred HHHHHHhCCCCCCCCCCCHHHHHhhccceeeehhhHHhhcCCCCCCChHHHHHHHHHHHHHhH
Q 047227 298 ELTYRLLGPYGMKVPQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSYSHLR 360 (485)
Q Consensus 298 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~d~~ka~~~lG~~p~~~l~e~i~~~~~~~~~~~ 360 (485)
+ . ......+|++|+++.|||+|+++++|+++++++||++..
T Consensus 301 --------------~----~----~~~~~~~d~~k~~~~lG~~p~~~l~~~l~~~~~w~~~~~ 341 (348)
T 1ek6_A 301 --------------E----G----DVAACYANPSLAQEELGWTAALGLDRMCEDLWRWQKQNP 341 (348)
T ss_dssp --------------T----T----CCSEECBCCHHHHHTTCCCCCCCHHHHHHHHHHHHHHCT
T ss_pred --------------C----c----cchhhccCHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcc
Confidence 0 0 012356799999999999999999999999999998743
|
| >2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-42 Score=339.65 Aligned_cols=293 Identities=27% Similarity=0.349 Sum_probs=238.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc--CCC
Q 047227 8 RLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ--GAE 85 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--~~d 85 (485)
|+||||||+||||+++++.|+++| ++|++++|...... . .+ ..+++++.+|++|++++.++++ ++|
T Consensus 1 m~vlVTGatG~iG~~l~~~L~~~G-~~V~~~~r~~~~~~---~-------~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~d 68 (311)
T 2p5y_A 1 MRVLVTGGAGFIGSHIVEDLLARG-LEVAVLDNLATGKR---E-------NV-PKGVPFFRVDLRDKEGVERAFREFRPT 68 (311)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTT-CEEEEECCCSSCCG---G-------GS-CTTCCEECCCTTCHHHHHHHHHHHCCS
T ss_pred CEEEEEeCCcHHHHHHHHHHHHCC-CEEEEEECCCcCch---h-------hc-ccCeEEEECCCCCHHHHHHHHHhcCCC
Confidence 589999999999999999999999 59999887432110 0 01 1467889999999999999998 899
Q ss_pred EEEEcCCCCC---CCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCc-cccccCCCCcCCCCCCCCCCCCCCchHHH
Q 047227 86 VVFHMAAPNS---SINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSP-SVVFDGVHGIINGNEALPYPPKHNDFYSA 161 (485)
Q Consensus 86 ~Vih~aa~~~---~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~-~vy~~~~~~~~~~~e~~~~~~~~~~~Y~~ 161 (485)
+|||+|+... +..++...+++|+.++.+++++|++.+++||||+||. ++|+... ...+.+|+.+ ..|.+.|+.
T Consensus 69 ~vi~~a~~~~~~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iv~~SS~~~~~g~~~-~~~~~~E~~~--~~~~~~Y~~ 145 (311)
T 2p5y_A 69 HVSHQAAQASVKVSVEDPVLDFEVNLLGGLNLLEACRQYGVEKLVFASTGGAIYGEVP-EGERAEETWP--PRPKSPYAA 145 (311)
T ss_dssp EEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEHHHHHCCCC-TTCCBCTTSC--CCCCSHHHH
T ss_pred EEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCCChhhcCCCC-CCCCcCCCCC--CCCCChHHH
Confidence 9999999543 2346778899999999999999999999999999998 8886411 1123344433 467889999
Q ss_pred HHHHHHHHHHHHhCCCCceEEEEecCCcccCCCCC-----ChHHHHHHHHcCCCeEEe-----cCCCceeecccHHHHHH
Q 047227 162 TKAEGEALVIKANGTNGLLTCCIRPSSIFGPGDRL-----LVPSLVAAARAGKSKFII-----GDGNNVYDFTYVANVAH 231 (485)
Q Consensus 162 sK~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~~-----~~~~~~~~~~~g~~~~~~-----g~g~~~~~~i~v~D~a~ 231 (485)
+|..+|.+++.++++++++++++||+++|||+... +++.++..+..++++.++ |++++.++|+|++|+|+
T Consensus 146 sK~~~e~~~~~~~~~~~~~~~~lrp~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dva~ 225 (311)
T 2p5y_A 146 SKAAFEHYLSVYGQSYGLKWVSLRYGNVYGPRQDPHGEAGVVAIFAERVLKGLPVTLYARKTPGDEGCVRDYVYVGDVAE 225 (311)
T ss_dssp HHHHHHHHHHHHHHHHCCCEEEEEECEEECTTCCSSSTTHHHHHHHHHHHHTCCEEEECSSSTTSCCCEECEEEHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEeeccccCcCCCCCCcCcHHHHHHHHHHcCCCcEEEecccCCCCCeEEeeEEHHHHHH
Confidence 99999999999887779999999999999998642 456777778888888888 89999999999999999
Q ss_pred HHHHHHHHhccccchhhccCCcEEEeeCCCCccHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCCCC
Q 047227 232 AHICAERALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELTYRLLGPYGMKV 311 (485)
Q Consensus 232 a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~~t~~el~~~i~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (485)
+++.+++. . +++||+++++++|+.|+++.+.+.+|.+.+....|..
T Consensus 226 a~~~~~~~----------~-~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~----------------------- 271 (311)
T 2p5y_A 226 AHALALFS----------L-EGIYNVGTGEGHTTREVLMAVAEAAGKAPEVQPAPPR----------------------- 271 (311)
T ss_dssp HHHHHHHH----------C-CEEEEESCSCCEEHHHHHHHHHHHHTCCCCEEEECCC-----------------------
T ss_pred HHHHHHhC----------C-CCEEEeCCCCCccHHHHHHHHHHHhCCCCCceeCCCC-----------------------
Confidence 99988762 2 7899999999999999999999999987654433321
Q ss_pred CCCCHHHHHhhccceeeehhhHHhhcCCCCCCChHHHHHHHHHHHHH
Q 047227 312 PQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSYSH 358 (485)
Q Consensus 312 p~~~~~~~~~~~~~~~~d~~ka~~~lG~~p~~~l~e~i~~~~~~~~~ 358 (485)
+ . ......+|++|+++ |||+|.++++|+++++++||++
T Consensus 272 ~----~----~~~~~~~d~~k~~~-lg~~p~~~~~~~l~~~~~~~~~ 309 (311)
T 2p5y_A 272 P----G----DLERSVLSPLKLMA-HGWRPKVGFQEGIRLTVDHFRG 309 (311)
T ss_dssp T----T----CCSBCCBCCHHHHT-TTCCCSSCHHHHHHHHHHHHHT
T ss_pred c----c----chhhccCCHHHHHH-CCCCCCCCHHHHHHHHHHHHHh
Confidence 0 0 01235689999999 9999999999999999999975
|
| >2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-42 Score=348.66 Aligned_cols=306 Identities=21% Similarity=0.303 Sum_probs=241.1
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCC
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGA 84 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 84 (485)
.++|+|||||||||||+++++.|+++|.++|++++|...... .. +. ..++++++.+|++|++++.++++++
T Consensus 30 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~---~~---l~---~~~~v~~~~~Dl~d~~~l~~~~~~~ 100 (377)
T 2q1s_A 30 LANTNVMVVGGAGFVGSNLVKRLLELGVNQVHVVDNLLSAEK---IN---VP---DHPAVRFSETSITDDALLASLQDEY 100 (377)
T ss_dssp GTTCEEEEETTTSHHHHHHHHHHHHTTCSEEEEECCCTTCCG---GG---SC---CCTTEEEECSCTTCHHHHHHCCSCC
T ss_pred hCCCEEEEECCccHHHHHHHHHHHHcCCceEEEEECCCCCch---hh---cc---CCCceEEEECCCCCHHHHHHHhhCC
Confidence 356899999999999999999999999238999988654211 00 00 1457899999999999999999999
Q ss_pred CEEEEcCCCCCC---CCchhhhHHHHHHHHHHHHHHHHhc-CCCEEEEecCccccccCCCCcCCCC--CCCC-CCC-CCC
Q 047227 85 EVVFHMAAPNSS---INNHKLHHSVNVEGTKNVIDACAEL-KVKRLIYTSSPSVVFDGVHGIINGN--EALP-YPP-KHN 156 (485)
Q Consensus 85 d~Vih~aa~~~~---~~~~~~~~~~nv~~t~~ll~a~~~~-~v~r~V~~SS~~vy~~~~~~~~~~~--e~~~-~~~-~~~ 156 (485)
|+|||+|+.... ..++...+++|+.++.+++++|++. +++||||+||.++|+..... +.+ |+.. .+. .|.
T Consensus 101 d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~~V~~SS~~vyg~~~~~--~~~~~E~~~~~~~~~~~ 178 (377)
T 2q1s_A 101 DYVFHLATYHGNQSSIHDPLADHENNTLTTLKLYERLKHFKRLKKVVYSAAGCSIAEKTFD--DAKATEETDIVSLHNND 178 (377)
T ss_dssp SEEEECCCCSCHHHHHHCHHHHHHHHTHHHHHHHHHHTTCSSCCEEEEEEEC----------------CCCCCCCSSCCC
T ss_pred CEEEECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeCCHHHcCCCCCC--CcCcccccccccccCCC
Confidence 999999995432 2467788999999999999999999 89999999999999754322 223 4331 123 677
Q ss_pred chHHHHHHHHHHHHHHHhCCCCceEEEEecCCcccCCC---------------CCChHHHHHHHHcCCCeEEecCCCcee
Q 047227 157 DFYSATKAEGEALVIKANGTNGLLTCCIRPSSIFGPGD---------------RLLVPSLVAAARAGKSKFIIGDGNNVY 221 (485)
Q Consensus 157 ~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~---------------~~~~~~~~~~~~~g~~~~~~g~g~~~~ 221 (485)
+.|+.+|..+|++++.++.+.+++++++||+++|||+. ..+++.++..+..++++.+++++++.+
T Consensus 179 ~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~ 258 (377)
T 2q1s_A 179 SPYSMSKIFGEFYSVYYHKQHQLPTVRARFQNVYGPGEILGAGRWRGTPATVWRNVTPTFIYKALKGMPLPLENGGVATR 258 (377)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTCCTTCSSCCSSGGGTSCSHHHHHHHHHHTTCCCCCSGGGCCEE
T ss_pred CchHHHHHHHHHHHHHHHHHhCCCEEEEeeccEECCCCcccccccccCcccccccHHHHHHHHHHcCCCeEEeCCCCeEE
Confidence 89999999999999998777799999999999999986 345778888888998888889999999
Q ss_pred ecccHHHHHHH-HHHHHHHhccccchhhccCCcEEEeeCCCCccHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHH
Q 047227 222 DFTYVANVAHA-HICAERALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELT 300 (485)
Q Consensus 222 ~~i~v~D~a~a-~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~~t~~el~~~i~~~~g~~~~~~~~p~~~~~~~~~~~~~~ 300 (485)
+|+|++|+|++ ++.+++. + ..| +||+++++++++.|+++.+.+.+|.+.+....|..
T Consensus 259 ~~i~v~Dva~a~i~~~~~~--------~-~~g-~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~p~~------------ 316 (377)
T 2q1s_A 259 DFIFVEDVANGLIACAADG--------T-PGG-VYNIASGKETSIADLATKINEITGNNTELDRLPKR------------ 316 (377)
T ss_dssp CCEEHHHHHHHHHHHHHHC--------C-TTE-EEECCCCCCEEHHHHHHHHHHHHTCCSCCCCCCCC------------
T ss_pred eeEEHHHHHHHHHHHHHhc--------C-CCC-eEEecCCCceeHHHHHHHHHHHhCCCCCceeCCCC------------
Confidence 99999999999 9988762 2 245 99999999999999999999999987654433310
Q ss_pred HHHhCCCCCCCCCCCHHHHHhhccceeeehhhHHhhcCCCCCCChHHHHHHHHHHHHHhHh
Q 047227 301 YRLLGPYGMKVPQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSYSHLRA 361 (485)
Q Consensus 301 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~d~~ka~~~lG~~p~~~l~e~i~~~~~~~~~~~~ 361 (485)
+.. ......+|++|++++|||+|.++++|+++++++||++...
T Consensus 317 ---------------~~~---~~~~~~~d~~k~~~~lG~~p~~~l~e~l~~~~~~~~~~~~ 359 (377)
T 2q1s_A 317 ---------------PWD---NSGKRFGSPEKARRELGFSADVSIDDGLRKTIEWTKANLA 359 (377)
T ss_dssp ---------------GGG---CC-CCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHTHH
T ss_pred ---------------ccc---cccccccCHHHHHHHcCCCCCCCHHHHHHHHHHHHHHhhh
Confidence 000 0014568999999999999999999999999999987543
|
| >1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-42 Score=343.17 Aligned_cols=295 Identities=17% Similarity=0.194 Sum_probs=233.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc--CC
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ--GA 84 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--~~ 84 (485)
+|+||||||+||||+++++.|+++| ++|++++|.. .+|+.|.+++.++++ ++
T Consensus 3 ~~~ilVtGatG~iG~~l~~~L~~~g-~~v~~~~r~~-------------------------~~D~~d~~~~~~~~~~~~~ 56 (321)
T 1e6u_A 3 KQRVFIAGHRGMVGSAIRRQLEQRG-DVELVLRTRD-------------------------ELNLLDSRAVHDFFASERI 56 (321)
T ss_dssp CEEEEEETTTSHHHHHHHHHHTTCT-TEEEECCCTT-------------------------TCCTTCHHHHHHHHHHHCC
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCC-CeEEEEecCc-------------------------cCCccCHHHHHHHHHhcCC
Confidence 4799999999999999999999999 5888876542 279999999999998 99
Q ss_pred CEEEEcCCCCC----CCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCccccccCCCCcCCCCCCCCC--CCCCC-c
Q 047227 85 EVVFHMAAPNS----SINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVVFDGVHGIINGNEALPY--PPKHN-D 157 (485)
Q Consensus 85 d~Vih~aa~~~----~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy~~~~~~~~~~~e~~~~--~~~~~-~ 157 (485)
|+|||+|+... ...++...+++|+.++.+++++|++.+++||||+||.++|+..... +.+|+.+. +..|. +
T Consensus 57 d~vih~a~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~vyg~~~~~--~~~E~~~~~~~~~p~~~ 134 (321)
T 1e6u_A 57 DQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVNKLLFLGSSCIYPKLAKQ--PMAESELLQGTLEPTNE 134 (321)
T ss_dssp SEEEECCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECCGGGSCTTCCS--SBCGGGTTSSCCCGGGH
T ss_pred CEEEEcCeecCCcchhhhCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccHHHcCCCCCC--CcCccccccCCCCCCCC
Confidence 99999999543 2346788899999999999999999999999999999999754333 23443321 23443 5
Q ss_pred hHHHHHHHHHHHHHHHhCCCCceEEEEecCCcccCCCC------CChHHHHHHHHc----C-CCeEEecCCCceeecccH
Q 047227 158 FYSATKAEGEALVIKANGTNGLLTCCIRPSSIFGPGDR------LLVPSLVAAARA----G-KSKFIIGDGNNVYDFTYV 226 (485)
Q Consensus 158 ~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~------~~~~~~~~~~~~----g-~~~~~~g~g~~~~~~i~v 226 (485)
.|+.+|..+|++++.++++++++++++||+++|||+.. .+++.++..+.. | .++.+++++++.++|+|+
T Consensus 135 ~Y~~sK~~~E~~~~~~~~~~~~~~~ilrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~i~v 214 (321)
T 1e6u_A 135 PYAIAKIAGIKLCESYNRQYGRDYRSVMPTNLYGPHDNFHPSNSHVIPALLRRFHEATAQKAPDVVVWGSGTPMREFLHV 214 (321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEESTTCCCCTTCSSHHHHHHHHHHHHHHHTCSEEEEESCSCCEECEEEH
T ss_pred ccHHHHHHHHHHHHHHHHHhCCCEEEEEeCCcCCcCCCCCCCCCccHHHHHHHHHHhhhcCCCceEEcCCCCEEEEeEEH
Confidence 99999999999999988777999999999999999865 456777776654 3 567788999999999999
Q ss_pred HHHHHHHHHHHHHhccccchhhccCCcEEEeeCCCCccHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhCC
Q 047227 227 ANVAHAHICAERALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELTYRLLGP 306 (485)
Q Consensus 227 ~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~~t~~el~~~i~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 306 (485)
+|+|++++.+++.........+...+++||+++++++|+.|+++.+.+.+|.+.+....|.
T Consensus 215 ~Dva~~~~~~~~~~~~~~~~~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~------------------- 275 (321)
T 1e6u_A 215 DDMAAASIHVMELAHEVWLENTQPMLSHINVGTGVDCTIRELAQTIAKVVGYKGRVVFDAS------------------- 275 (321)
T ss_dssp HHHHHHHHHHHHSCHHHHHHTSBTTBCCEEESCSCCEEHHHHHHHHHHHHTCCSEEEEETT-------------------
T ss_pred HHHHHHHHHHHhCcccccccccccCCceEEeCCCCCccHHHHHHHHHHHhCCCCceEeCCC-------------------
Confidence 9999999999874211000000123679999999999999999999999998754433221
Q ss_pred CCCCCCCCCHHHHHhhccceeeehhhHHhhcCCCCCCChHHHHHHHHHHHHHhHh
Q 047227 307 YGMKVPQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSYSHLRA 361 (485)
Q Consensus 307 ~~~~~p~~~~~~~~~~~~~~~~d~~ka~~~lG~~p~~~l~e~i~~~~~~~~~~~~ 361 (485)
.|. ......+|++|+++ |||+|.++++|+++++++||++..+
T Consensus 276 ----~~~--------~~~~~~~d~~k~~~-lG~~p~~~~~~~l~~~~~~~~~~~~ 317 (321)
T 1e6u_A 276 ----KPD--------GTPRKLLDVTRLHQ-LGWYHEISLEAGLASTYQWFLENQD 317 (321)
T ss_dssp ----SCC--------CCSBCCBCCHHHHH-TTCCCCCCHHHHHHHHHHHHHHTC-
T ss_pred ----CCC--------CcccccCCHHHHHh-cCCccCCcHHHHHHHHHHHHHHHHH
Confidence 000 11245689999999 9999999999999999999987543
|
| >3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-43 Score=344.78 Aligned_cols=300 Identities=20% Similarity=0.249 Sum_probs=237.4
Q ss_pred CCCCCCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHH
Q 047227 1 MSGEENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQA 80 (485)
Q Consensus 1 M~~~~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~ 80 (485)
|+...++|+|||||||||||+++++.|+++| ++|++++|........... +.......+++++.+|+.
T Consensus 1 M~~~~~~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~---~~~~~~~~~~~~~~~Dl~-------- 68 (321)
T 3vps_A 1 MQRNTLKHRILITGGAGFIGGHLARALVASG-EEVTVLDDLRVPPMIPPEG---TGKFLEKPVLELEERDLS-------- 68 (321)
T ss_dssp ------CCEEEEETTTSHHHHHHHHHHHHTT-CCEEEECCCSSCCSSCCTT---SSEEECSCGGGCCHHHHT--------
T ss_pred CCcccCCCeEEEECCCChHHHHHHHHHHHCC-CEEEEEecCCcccccchhh---hhhhccCCCeeEEeCccc--------
Confidence 6665667999999999999999999999999 5999999876521111111 111222346677777766
Q ss_pred hcCCCEEEEcCCCCC---CCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCccccccCCCCcCCCCCCCCCCCCCCc
Q 047227 81 LQGAEVVFHMAAPNS---SINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVVFDGVHGIINGNEALPYPPKHND 157 (485)
Q Consensus 81 ~~~~d~Vih~aa~~~---~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy~~~~~~~~~~~e~~~~~~~~~~ 157 (485)
++|+|||+|+... ...++...++ |+.++.+++++|++.+++||||+||.++|+..... +.+|+.+ ..|.+
T Consensus 69 --~~d~vi~~a~~~~~~~~~~~~~~~~~-n~~~~~~ll~a~~~~~v~~~v~~SS~~v~~~~~~~--~~~E~~~--~~p~~ 141 (321)
T 3vps_A 69 --DVRLVYHLASHKSVPRSFKQPLDYLD-NVDSGRHLLALCTSVGVPKVVVGSTCEVYGQADTL--PTPEDSP--LSPRS 141 (321)
T ss_dssp --TEEEEEECCCCCCHHHHTTSTTTTHH-HHHHHHHHHHHHHHHTCCEEEEEEEGGGGCSCSSS--SBCTTSC--CCCCS
T ss_pred --cCCEEEECCccCChHHHHhCHHHHHH-HHHHHHHHHHHHHHcCCCeEEEecCHHHhCCCCCC--CCCCCCC--CCCCC
Confidence 7999999999443 2455666778 99999999999999999999999999999754332 3444443 56889
Q ss_pred hHHHHHHHHHHHHHHHhCCCCc-eEEEEecCCcccCCCC--CChHHHHHHHHcCCCeEEecCCCceeecccHHHHHHHHH
Q 047227 158 FYSATKAEGEALVIKANGTNGL-LTCCIRPSSIFGPGDR--LLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHI 234 (485)
Q Consensus 158 ~Y~~sK~~~E~~~~~~~~~~g~-~~~ilRp~~v~Gp~~~--~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~D~a~a~~ 234 (485)
.|+.+|..+|++++.++.++++ +++++||+++|||+.. .+++.++..+..++++.++|++++.++|+|++|+|++++
T Consensus 142 ~Y~~sK~~~E~~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~~~~ 221 (321)
T 3vps_A 142 PYAASKVGLEMVAGAHQRASVAPEVGIVRFFNVYGPGERPDALVPRLCANLLTRNELPVEGDGEQRRDFTYITDVVDKLV 221 (321)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSSCEEEEEEECEEECTTCCTTSHHHHHHHHHHHHSEEEEETTSCCEECEEEHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHcCCCceEEEEeccccCcCCCCCChHHHHHHHHHcCCCeEEeCCCCceEceEEHHHHHHHHH
Confidence 9999999999999999988899 9999999999999875 467888888999999999999999999999999999999
Q ss_pred HHHHHhccccchhhccCCcEEEeeCCCCccHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCCCCCCC
Q 047227 235 CAERALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELTYRLLGPYGMKVPQL 314 (485)
Q Consensus 235 ~~~~~~~~~~~~~~~~~g~~ynv~~~~~~t~~el~~~i~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 314 (485)
.+++. + ..| +||+++++++++.|+++.+. .+|.+.+....|.. +
T Consensus 222 ~~~~~--------~-~~g-~~~i~~~~~~s~~e~~~~i~-~~g~~~~~~~~~~~-----------------------~-- 265 (321)
T 3vps_A 222 ALANR--------P-LPS-VVNFGSGQSLSVNDVIRILQ-ATSPAAEVARKQPR-----------------------P-- 265 (321)
T ss_dssp HGGGS--------C-CCS-EEEESCSCCEEHHHHHHHHH-TTCTTCEEEEECCC-----------------------T--
T ss_pred HHHhc--------C-CCC-eEEecCCCcccHHHHHHHHH-HhCCCCccccCCCC-----------------------C--
Confidence 88652 1 236 99999999999999999999 99987665543321 0
Q ss_pred CHHHHHhhccceeeehhhHHhhcCCCC-CCChHHHHHHHHHHHHHhHh
Q 047227 315 TPSRVRLLSCSRTFDCSKAKDLLGYMP-IVPLEEGIKRTVDSYSHLRA 361 (485)
Q Consensus 315 ~~~~~~~~~~~~~~d~~ka~~~lG~~p-~~~l~e~i~~~~~~~~~~~~ 361 (485)
.......+|++|+++.|||+| .++++|+++++++||++...
T Consensus 266 ------~~~~~~~~d~~k~~~~lG~~p~~~~~~~~l~~~~~~~~~~~~ 307 (321)
T 3vps_A 266 ------NEITEFRADTALQTRQIGERSGGIGIEEGIRLTLEWWQSRDL 307 (321)
T ss_dssp ------TCCSBCCBCCHHHHHHHCCCSCCCCHHHHHHHHHHHHHTSCT
T ss_pred ------CCcceeeccHHHHHHHhCCCCCcCCHHHHHHHHHHHHHhCCC
Confidence 011245689999999999999 88999999999999987543
|
| >1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A {Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-41 Score=337.09 Aligned_cols=306 Identities=25% Similarity=0.341 Sum_probs=244.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHhc---CC--ceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc
Q 047227 8 RLCVVTGGRGFAARHLVEMLIRY---DM--FSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ 82 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~~---G~--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~ 82 (485)
|+|||||||||||+++++.|+++ |. ++|++++|...... ... +.......+++++.+|++|++++.+++.
T Consensus 1 M~vlVTGatG~iG~~l~~~L~~~~~~g~~~~~V~~~~r~~~~~~--~~~---~~~~~~~~~~~~~~~Dl~d~~~~~~~~~ 75 (337)
T 1r6d_A 1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGN--RAN---LAPVDADPRLRFVHGDIRDAGLLARELR 75 (337)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECCCTTCC--GGG---GGGGTTCTTEEEEECCTTCHHHHHHHTT
T ss_pred CeEEEECCccHHHHHHHHHHHhhhcCCCCceEEEEEECCCccCc--hhh---hhhcccCCCeEEEEcCCCCHHHHHHHhc
Confidence 58999999999999999999996 51 48999988642110 000 1111123579999999999999999999
Q ss_pred CCCEEEEcCCCCC---CCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCccccccCCCCcCCCCCCCCCCCCCCchH
Q 047227 83 GAEVVFHMAAPNS---SINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDFY 159 (485)
Q Consensus 83 ~~d~Vih~aa~~~---~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy~~~~~~~~~~~e~~~~~~~~~~~Y 159 (485)
++|+|||+|+... +..++..++++|+.++.+++++|++.+++||||+||.++|+..... +.+|+.+ ..|.+.|
T Consensus 76 ~~d~Vih~A~~~~~~~~~~~~~~~~~~Nv~~~~~l~~a~~~~~~~~~v~~SS~~vyg~~~~~--~~~E~~~--~~~~~~Y 151 (337)
T 1r6d_A 76 GVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVGRVVHVSTNQVYGSIDSG--SWTESSP--LEPNSPY 151 (337)
T ss_dssp TCCEEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHTTCCEEEEEEEGGGGCCCSSS--CBCTTSC--CCCCSHH
T ss_pred CCCEEEECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEecchHHhCCCCCC--CCCCCCC--CCCCCch
Confidence 9999999999543 2246778899999999999999999999999999999999754322 3344433 4678899
Q ss_pred HHHHHHHHHHHHHHhCCCCceEEEEecCCcccCCCC--CChHHHHHHHHcCCCeEEecCCCceeecccHHHHHHHHHHHH
Q 047227 160 SATKAEGEALVIKANGTNGLLTCCIRPSSIFGPGDR--LLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICAE 237 (485)
Q Consensus 160 ~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~--~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~D~a~a~~~~~ 237 (485)
+.+|..+|.+++.++.+++++++++||+++|||+.. .+++.++..+..++++.+++++++.++|+|++|+|++++.++
T Consensus 152 ~~sK~~~e~~~~~~~~~~g~~~~ilrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~ 231 (337)
T 1r6d_A 152 AASKAGSDLVARAYHRTYGLDVRITRCCNNYGPYQHPEKLIPLFVTNLLDGGTLPLYGDGANVREWVHTDDHCRGIALVL 231 (337)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCEEEEEECEEECTTCCTTSHHHHHHHHHHTTCCEEEETTSCCEEEEEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEEEeeeeECCCCCCCChHHHHHHHHhcCCCcEEeCCCCeeEeeEeHHHHHHHHHHHH
Confidence 999999999999988777999999999999999864 456778888888988888899999999999999999999887
Q ss_pred HHhccccchhhccCCcEEEeeCCCCccHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCCCCCCCCHH
Q 047227 238 RALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELTYRLLGPYGMKVPQLTPS 317 (485)
Q Consensus 238 ~~~~~~~~~~~~~~g~~ynv~~~~~~t~~el~~~i~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 317 (485)
+. + ..|++||+++++++|+.|+++.+.+.+|.+.+.+... + ..+.
T Consensus 232 ~~--------~-~~g~~~~v~~~~~~s~~e~~~~i~~~~g~~~~~~~~~-------------------~---~~~~---- 276 (337)
T 1r6d_A 232 AG--------G-RAGEIYHIGGGLELTNRELTGILLDSLGADWSSVRKV-------------------A---DRKG---- 276 (337)
T ss_dssp HH--------C-CTTCEEEECCCCEEEHHHHHHHHHHHHTCCGGGEEEE-------------------C---CCTT----
T ss_pred hC--------C-CCCCEEEeCCCCCccHHHHHHHHHHHhCCCcccceec-------------------C---CCCC----
Confidence 63 1 3578999999999999999999999999764322100 0 0010
Q ss_pred HHHhhccceeeehhhHHhhcCCCCCCChHHHHHHHHHHHHHhHh
Q 047227 318 RVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSYSHLRA 361 (485)
Q Consensus 318 ~~~~~~~~~~~d~~ka~~~lG~~p~~~l~e~i~~~~~~~~~~~~ 361 (485)
......+|++|+++.|||+|.++++|+++++++||++...
T Consensus 277 ----~~~~~~~d~~k~~~~lG~~p~~~~~e~l~~~~~~~~~~~~ 316 (337)
T 1r6d_A 277 ----HDLRYSLDGGKIERELGYRPQVSFADGLARTVRWYRENRG 316 (337)
T ss_dssp ----CCCBCCBCCHHHHHHHCCCCCSCHHHHHHHHHHHHHHCHH
T ss_pred ----CcceeecCHHHHHHHcCCCCCCCHHHHHHHHHHHHHhchh
Confidence 0112457999999999999999999999999999987543
|
| >1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-41 Score=339.45 Aligned_cols=306 Identities=22% Similarity=0.263 Sum_probs=245.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhc--CCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCC
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRY--DMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGA 84 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~--G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 84 (485)
||+||||||+||||+++++.|+++ | ++|++++|....... .. +. .+..++++++.+|++|++++.++++++
T Consensus 4 m~~vlVTGatG~iG~~l~~~L~~~~~g-~~V~~~~r~~~~~~~--~~---~~-~~~~~~~~~~~~Dl~d~~~~~~~~~~~ 76 (348)
T 1oc2_A 4 FKNIIVTGGAGFIGSNFVHYVYNNHPD-VHVTVLDKLTYAGNK--AN---LE-AILGDRVELVVGDIADAELVDKLAAKA 76 (348)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHHCTT-CEEEEEECCCTTCCG--GG---TG-GGCSSSEEEEECCTTCHHHHHHHHTTC
T ss_pred CcEEEEeCCccHHHHHHHHHHHHhCCC-CEEEEEeCCCCCCCh--hH---Hh-hhccCCeEEEECCCCCHHHHHHHhhcC
Confidence 579999999999999999999999 7 699999986431110 00 11 122368999999999999999999999
Q ss_pred CEEEEcCCCCC---CCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCccccccCCCC----------cCCCCCCCCC
Q 047227 85 EVVFHMAAPNS---SINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVVFDGVHG----------IINGNEALPY 151 (485)
Q Consensus 85 d~Vih~aa~~~---~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy~~~~~~----------~~~~~e~~~~ 151 (485)
|+|||+|+... +..++...+++|+.++.+++++|++.++ ||||+||.++|+..... ..+.+|+.+
T Consensus 77 d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~-~~v~~SS~~vyg~~~~~~~~~~~~~~~~~~~~E~~~- 154 (348)
T 1oc2_A 77 DAIVHYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDI-RFHHVSTDEVYGDLPLREDLPGHGEGPGEKFTAETN- 154 (348)
T ss_dssp SEEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHHTC-EEEEEEEGGGGCCBCCGGGSTTTTCSTTSSBCTTSC-
T ss_pred CEEEECCcccCccchhhCHHHHHHHHHHHHHHHHHHHHHhCC-eEEEecccceeCCCcccccccccccccCCCcCCCCC-
Confidence 99999999543 2346778899999999999999999998 99999999999753210 023444433
Q ss_pred CCCCCchHHHHHHHHHHHHHHHhCCCCceEEEEecCCcccCCCC--CChHHHHHHHHcCCCeEEecCCCceeecccHHHH
Q 047227 152 PPKHNDFYSATKAEGEALVIKANGTNGLLTCCIRPSSIFGPGDR--LLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANV 229 (485)
Q Consensus 152 ~~~~~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~--~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~D~ 229 (485)
..|.+.|+.+|..+|.+++.++.+++++++++||+++|||+.. .+++.++..+..++++.+++++++.++|+|++|+
T Consensus 155 -~~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~ilrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dv 233 (348)
T 1oc2_A 155 -YNPSSPYSSTKAASDLIVKAWVRSFGVKATISNCSNNYGPYQHIEKFIPRQITNILAGIKPKLYGEGKNVRDWIHTNDH 233 (348)
T ss_dssp -CCCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEESTTCCTTSHHHHHHHHHHHTCCCEEETTSCCEEECEEHHHH
T ss_pred -CCCCCccHHHHHHHHHHHHHHHHHhCCCEEEEeeceeeCCCCCccchHHHHHHHHHcCCCceEecCCCceEeeEEHHHH
Confidence 4678899999999999999988777999999999999999864 4567788888888888888999999999999999
Q ss_pred HHHHHHHHHHhccccchhhccCCcEEEeeCCCCccHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCC
Q 047227 230 AHAHICAERALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELTYRLLGPYGM 309 (485)
Q Consensus 230 a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~~t~~el~~~i~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 309 (485)
|++++.+++. + ..|++||+++++++++.|+++.+.+.+|.+.+.+....
T Consensus 234 a~~~~~~~~~--------~-~~g~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~---------------------- 282 (348)
T 1oc2_A 234 STGVWAILTK--------G-RMGETYLIGADGEKNNKEVLELILEKMGQPKDAYDHVT---------------------- 282 (348)
T ss_dssp HHHHHHHHHH--------C-CTTCEEEECCSCEEEHHHHHHHHHHHTTCCTTCSEEEC----------------------
T ss_pred HHHHHHHhhC--------C-CCCCeEEeCCCCCCCHHHHHHHHHHHhCCCccccccCC----------------------
Confidence 9999988762 1 35789999999999999999999999998654221000
Q ss_pred CCCCCCHHHHHhhccceeeehhhHHhhcCCCCCCC-hHHHHHHHHHHHHHhHh
Q 047227 310 KVPQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVP-LEEGIKRTVDSYSHLRA 361 (485)
Q Consensus 310 ~~p~~~~~~~~~~~~~~~~d~~ka~~~lG~~p~~~-l~e~i~~~~~~~~~~~~ 361 (485)
..+. ......+|++|+++.|||+|+++ ++|+++++++||++...
T Consensus 283 ~~~~--------~~~~~~~d~~k~~~~lG~~p~~~~~~~~l~~~~~~~~~~~~ 327 (348)
T 1oc2_A 283 DRAG--------HDLRYAIDASKLRDELGWTPQFTDFSEGLEETIQWYTDNQD 327 (348)
T ss_dssp CCTT--------CCCBCCBCCHHHHHHHCCCCSCCCHHHHHHHHHHHHHHTHH
T ss_pred CCCC--------cccccccCHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHhhh
Confidence 0010 01234579999999999999988 99999999999987543
|
| >2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-42 Score=339.98 Aligned_cols=318 Identities=19% Similarity=0.229 Sum_probs=244.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHhc-CCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCC-HHHHHHHhcCCC
Q 047227 8 RLCVVTGGRGFAARHLVEMLIRY-DMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRH-KAQVLQALQGAE 85 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~~-G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d-~~~l~~~~~~~d 85 (485)
|+|||||||||||+++++.|+++ | ++|++++|..... ......++++++.+|++| .+.+.++++++|
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~~g-~~V~~~~r~~~~~----------~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~d 69 (345)
T 2bll_A 1 MRVLILGVNGFIGNHLTERLLREDH-YEVYGLDIGSDAI----------SRFLNHPHFHFVEGDISIHSEWIEYHVKKCD 69 (345)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHSTT-CEEEEEESCCGGG----------GGGTTCTTEEEEECCTTTCSHHHHHHHHHCS
T ss_pred CeEEEECCCcHHHHHHHHHHHHhCC-CEEEEEeCCcchH----------HHhhcCCCeEEEeccccCcHHHHHhhccCCC
Confidence 58999999999999999999998 8 6999999875421 111224579999999998 467888899999
Q ss_pred EEEEcCCCCC---CCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCccccccCCCCcCCCCCCCCC----C-CCCCc
Q 047227 86 VVFHMAAPNS---SINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVVFDGVHGIINGNEALPY----P-PKHND 157 (485)
Q Consensus 86 ~Vih~aa~~~---~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy~~~~~~~~~~~e~~~~----~-~~~~~ 157 (485)
+|||+|+... ...++...+++|+.++.+++++|++.+ +||||+||.++|+...... .+|+.+. | ..|.+
T Consensus 70 ~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~v~~SS~~v~g~~~~~~--~~e~~~~~~~~~~~~~~~ 146 (345)
T 2bll_A 70 VVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYR-KRIIFPSTSEVYGMCSDKY--FDEDHSNLIVGPVNKPRW 146 (345)
T ss_dssp EEEECBCCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTT-CEEEEECCGGGGBTCCCSS--BCTTTCCCBCCCTTCGGG
T ss_pred EEEEcccccCccchhcCHHHHHHHHHHHHHHHHHHHHHhC-CeEEEEecHHHcCCCCCCC--cCCcccccccCcccCccc
Confidence 9999999543 224677889999999999999999999 8999999999997543322 2333221 1 14566
Q ss_pred hHHHHHHHHHHHHHHHhCCCCceEEEEecCCcccCCCC----------CChHHHHHHHHcCCCeEEecCCCceeecccHH
Q 047227 158 FYSATKAEGEALVIKANGTNGLLTCCIRPSSIFGPGDR----------LLVPSLVAAARAGKSKFIIGDGNNVYDFTYVA 227 (485)
Q Consensus 158 ~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~----------~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~ 227 (485)
.|+.+|..+|++++.++++.+++++++||+++|||+.. ..+..++..+..|+++.+++++++.++|+|++
T Consensus 147 ~Y~~sK~~~e~~~~~~~~~~~~~~~ilrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~ 226 (345)
T 2bll_A 147 IYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIR 226 (345)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCEEEEEECSEECSSCCCTTCSBSCBCHHHHHHHHHHHHTCCEEEGGGSCCEEECEEHH
T ss_pred ccHHHHHHHHHHHHHHHHhcCCCEEEEcCCcccCCCcccccccccccccHHHHHHHHHHcCCCcEEECCCCEEEEEEEHH
Confidence 89999999999999988777999999999999999864 24567788888899888889999999999999
Q ss_pred HHHHHHHHHHHHhccccchhhccCCcEEEeeCCC-CccHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhCC
Q 047227 228 NVAHAHICAERALASEVTVAEKAAGQAYFVTNME-SIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELTYRLLGP 306 (485)
Q Consensus 228 D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~-~~t~~el~~~i~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 306 (485)
|+|++++.+++.... ...|++||+++++ ++|+.|+++.+.+.+|.+.+.+.+|.+......
T Consensus 227 Dva~a~~~~~~~~~~------~~~g~~~~i~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~------------ 288 (345)
T 2bll_A 227 DGIEALYRIIENAGN------RCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVV------------ 288 (345)
T ss_dssp HHHHHHHHHHHCGGG------TTTTEEEEECCTTSEEEHHHHHHHHHHHHHTCTTGGGSCCCCCEEEC------------
T ss_pred HHHHHHHHHHhhccc------cCCCceEEeCCCCCCCCHHHHHHHHHHHhCCCcccccCccccccccc------------
Confidence 999999999873211 1457899999986 899999999999999987655544432100000
Q ss_pred CCCCCCCCCHHHHHhhccceeeehhhHHhhcCCCCCCChHHHHHHHHHHHHHhHh
Q 047227 307 YGMKVPQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSYSHLRA 361 (485)
Q Consensus 307 ~~~~~p~~~~~~~~~~~~~~~~d~~ka~~~lG~~p~~~l~e~i~~~~~~~~~~~~ 361 (485)
....+.... ........+|++|++++|||+|+++++|+++++++||++..+
T Consensus 289 ---~~~~~~~~~-~~~~~~~~~d~~k~~~~lG~~p~~~l~~~l~~~~~~~~~~~~ 339 (345)
T 2bll_A 289 ---ESSSYYGKG-YQDVEHRKPSIRNAHRCLDWEPKIDMQETIDETLDFFLRTVD 339 (345)
T ss_dssp ----------------CCCCCBCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHSC
T ss_pred ---cchhhcccc-ccchhhhcccHHHHHHhcCCCccccHHHHHHHHHHHHHHcCC
Confidence 000000000 001134567999999999999999999999999999987543
|
| >1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-42 Score=338.11 Aligned_cols=309 Identities=18% Similarity=0.181 Sum_probs=240.8
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcC-
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQG- 83 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~- 83 (485)
.++|+||||||+||||+++++.|+++| ++|++++|....... . .+......++++++.+|++|++++.+++++
T Consensus 12 ~~~~~vlVTGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~--~---~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~ 85 (335)
T 1rpn_A 12 SMTRSALVTGITGQDGAYLAKLLLEKG-YRVHGLVARRSSDTR--W---RLRELGIEGDIQYEDGDMADACSVQRAVIKA 85 (335)
T ss_dssp ---CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCCSSCCC--H---HHHHTTCGGGEEEEECCTTCHHHHHHHHHHH
T ss_pred ccCCeEEEECCCChHHHHHHHHHHHCC-CeEEEEeCCCccccc--c---chhhccccCceEEEECCCCCHHHHHHHHHHc
Confidence 467999999999999999999999999 699999987542110 0 011111235789999999999999999985
Q ss_pred -CCEEEEcCCCCCC---CCchhhhHHHHHHHHHHHHHHHHhcCC-CEEEEecCccccccCCCCcCCCCCCCCCCCCCCch
Q 047227 84 -AEVVFHMAAPNSS---INNHKLHHSVNVEGTKNVIDACAELKV-KRLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDF 158 (485)
Q Consensus 84 -~d~Vih~aa~~~~---~~~~~~~~~~nv~~t~~ll~a~~~~~v-~r~V~~SS~~vy~~~~~~~~~~~e~~~~~~~~~~~ 158 (485)
+|+|||+|+.... ..++...+++|+.++.+++++|++.++ ++|||+||.++|+.... .+.+|+.+ ..|.+.
T Consensus 86 ~~d~Vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v~~SS~~v~g~~~~--~~~~E~~~--~~p~~~ 161 (335)
T 1rpn_A 86 QPQEVYNLAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPETRFYQASTSEMFGLIQA--ERQDENTP--FYPRSP 161 (335)
T ss_dssp CCSEEEECCSCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTSEEEEEEEGGGGCSCSS--SSBCTTSC--CCCCSH
T ss_pred CCCEEEECccccchhhhhhChHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCHHHhCCCCC--CCCCcccC--CCCCCh
Confidence 7999999995432 456788999999999999999999996 89999999999975433 23344443 567889
Q ss_pred HHHHHHHHHHHHHHHhCCCCceEEEEecCCcccCCCCC-C----hHHHHHHHHcCCC-eEEecCCCceeecccHHHHHHH
Q 047227 159 YSATKAEGEALVIKANGTNGLLTCCIRPSSIFGPGDRL-L----VPSLVAAARAGKS-KFIIGDGNNVYDFTYVANVAHA 232 (485)
Q Consensus 159 Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~~-~----~~~~~~~~~~g~~-~~~~g~g~~~~~~i~v~D~a~a 232 (485)
|+.+|..+|.+++.++.+++++++++||+++|||+... + +..++..+..|+. ...+|++++.++|+|++|+|++
T Consensus 162 Y~~sK~~~e~~~~~~~~~~~~~~~i~r~~~v~Gp~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~g~~~~~~i~v~Dva~a 241 (335)
T 1rpn_A 162 YGVAKLYGHWITVNYRESFGLHASSGILFNHESPLRGIEFVTRKVTDAVARIKLGKQQELRLGNVDAKRDWGFAGDYVEA 241 (335)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTSCTTSHHHHHHHHHHHHHTTSCSCEEESCTTCEEECEEHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHcCCcEEEEeeCcccCCCCCCCcchHHHHHHHHHHHcCCCceEEeCCCcceeceEEHHHHHHH
Confidence 99999999999999887779999999999999997642 2 4455666667764 4567899999999999999999
Q ss_pred HHHHHHHhccccchhhccCCcEEEeeCCCCccHHHHHHHHHHHcCCCCCC-ccCCHHHHHHHHHHHHHHHHHhCCCCCCC
Q 047227 233 HICAERALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPR-IKIPAFVMMPIAHMVELTYRLLGPYGMKV 311 (485)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~~t~~el~~~i~~~~g~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (485)
++.+++. ..+++||+++++++|+.|+++.+.+.+|.+.+. +.++..
T Consensus 242 ~~~~~~~----------~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~----------------------- 288 (335)
T 1rpn_A 242 MWLMLQQ----------DKADDYVVATGVTTTVRDMCQIAFEHVGLDYRDFLKIDPA----------------------- 288 (335)
T ss_dssp HHHHHHS----------SSCCCEEECCSCEEEHHHHHHHHHHTTTCCGGGTEEECGG-----------------------
T ss_pred HHHHHhc----------CCCCEEEEeCCCCccHHHHHHHHHHHhCCCcccccccccc-----------------------
Confidence 9998763 124789999999999999999999999975321 111110
Q ss_pred CCCCHHHHHhhccceeeehhhHHhhcCCCCCCChHHHHHHHHHHHHHhHh
Q 047227 312 PQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSYSHLRA 361 (485)
Q Consensus 312 p~~~~~~~~~~~~~~~~d~~ka~~~lG~~p~~~l~e~i~~~~~~~~~~~~ 361 (485)
...+. ......+|++|++++|||+|.++++|+++++++||++...
T Consensus 289 -~~~~~----~~~~~~~d~~k~~~~lG~~p~~~l~e~l~~~~~~~~~~~~ 333 (335)
T 1rpn_A 289 -FFRPA----EVDVLLGNPAKAQRVLGWKPRTSLDELIRMMVEADLRRVS 333 (335)
T ss_dssp -GCCSS----CCCBCCBCTHHHHHHHCCCCCSCHHHHHHHHHHHHHHHHH
T ss_pred -ccCCC----cchhhcCCHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhc
Confidence 00000 0123467999999999999999999999999999988654
|
| >1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-42 Score=339.61 Aligned_cols=310 Identities=21% Similarity=0.249 Sum_probs=241.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcC--C
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQG--A 84 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~--~ 84 (485)
||+|||||||||||+++++.|+++| ++|++++|...... .. .........+++++.+|++|++++.+++++ +
T Consensus 1 M~~vlVTGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~---~~--~~~~l~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 74 (347)
T 1orr_A 1 MAKLLITGGCGFLGSNLASFALSQG-IDLIVFDNLSRKGA---TD--NLHWLSSLGNFEFVHGDIRNKNDVTRLITKYMP 74 (347)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCCSTTH---HH--HHHHHHTTCCCEEEECCTTCHHHHHHHHHHHCC
T ss_pred CcEEEEeCCCchhHHHHHHHHHhCC-CEEEEEeCCCccCc---hh--hhhhhccCCceEEEEcCCCCHHHHHHHHhccCC
Confidence 3799999999999999999999999 69999987532110 00 011111234689999999999999999988 9
Q ss_pred CEEEEcCCCCCC---CCchhhhHHHHHHHHHHHHHHHHhcCCC-EEEEecCccccccCCCCcC--------------CCC
Q 047227 85 EVVFHMAAPNSS---INNHKLHHSVNVEGTKNVIDACAELKVK-RLIYTSSPSVVFDGVHGII--------------NGN 146 (485)
Q Consensus 85 d~Vih~aa~~~~---~~~~~~~~~~nv~~t~~ll~a~~~~~v~-r~V~~SS~~vy~~~~~~~~--------------~~~ 146 (485)
|+|||+|+.... ..++...+++|+.++.+++++|++.+++ ||||+||.++|+....... +.+
T Consensus 75 d~vih~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~~~~iv~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~~ 154 (347)
T 1orr_A 75 DSCFHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNIIYSSTNKVYGDLEQYKYNETETRYTCVDKPNGYD 154 (347)
T ss_dssp SEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEGGGGTTCTTSCEEECSSCEEETTCTTCBC
T ss_pred CEEEECCcccChhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEeccHHHhCCCCcCCcccccccccccccccCcc
Confidence 999999995432 3467788999999999999999999985 9999999999975332211 123
Q ss_pred CCCCCCCCCCchHHHHHHHHHHHHHHHhCCCCceEEEEecCCcccCCCC-----CChHHHHHHHHcCC-----CeEEecC
Q 047227 147 EALPYPPKHNDFYSATKAEGEALVIKANGTNGLLTCCIRPSSIFGPGDR-----LLVPSLVAAARAGK-----SKFIIGD 216 (485)
Q Consensus 147 e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~-----~~~~~~~~~~~~g~-----~~~~~g~ 216 (485)
|+. +..|.+.|+.+|..+|++++.++.+++++++++||+++|||+.. ..++.++..+..++ ++.++|+
T Consensus 155 e~~--~~~~~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilrp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 232 (347)
T 1orr_A 155 EST--QLDFHSPYGCSKGAADQYMLDYARIFGLNTVVFRHSSMYGGRQFATYDQGWVGWFCQKAVEIKNGINKPFTISGN 232 (347)
T ss_dssp TTS--CCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTCCCBTTBCHHHHHHHHHHHHHTTCCCCEEEESS
T ss_pred ccC--CCCCCCchHHHHHHHHHHHHHHHHHhCCcEEEEccCceeCcCCCCCCcCcHHHHHHHHHHhCcccCCCCeEEecC
Confidence 332 34578899999999999999988777999999999999999753 24566666666665 6778899
Q ss_pred CCceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCC--CccHHHHHHHHHHHcCCCCCCccCCHHHHHHHH
Q 047227 217 GNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNME--SIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIA 294 (485)
Q Consensus 217 g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~--~~t~~el~~~i~~~~g~~~~~~~~p~~~~~~~~ 294 (485)
+++.++|+|++|+|++++.+++.. +...|++||+++++ ++|+.|+++.+.+.+|.+.+....|..
T Consensus 233 g~~~~~~i~v~Dva~a~~~~~~~~-------~~~~g~~~~v~~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~------ 299 (347)
T 1orr_A 233 GKQVRDVLHAEDMISLYFTALANV-------SKIRGNAFNIGGTIVNSLSLLELFKLLEDYCNIDMRFTNLPVR------ 299 (347)
T ss_dssp SCCEEECEEHHHHHHHHHHHHHTH-------HHHTTCEEEESSCGGGEEEHHHHHHHHHHHHTCCCCEEEECCC------
T ss_pred CcceEeeEEHHHHHHHHHHHHhcc-------ccCCCCEEEeCCCCCCCccHHHHHHHHHHHhCCCCCceeCCCC------
Confidence 999999999999999999987631 22567899999986 599999999999999987655443310
Q ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHhhccceeeehhhHHhhcCCCCCCChHHHHHHHHHHHHHhHhc
Q 047227 295 HMVELTYRLLGPYGMKVPQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSYSHLRAE 362 (485)
Q Consensus 295 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~d~~ka~~~lG~~p~~~l~e~i~~~~~~~~~~~~~ 362 (485)
+ . ......+|++|+++.|||+|+++++|+++++++||++....
T Consensus 300 -----------------~----~----~~~~~~~d~~k~~~~lG~~p~~~~~e~l~~~~~~~~~~~~~ 342 (347)
T 1orr_A 300 -----------------E----S----DQRVFVADIKKITNAIDWSPKVSAKDGVQKMYDWTSSILEH 342 (347)
T ss_dssp -----------------S----S----CCSEECBCCHHHHHHHCCCCCSCHHHHHHHHHHHHHHC---
T ss_pred -----------------C----C----CcceeecCHHHHHHHHCCCccCCHHHHHHHHHHHHHHHHHh
Confidence 0 0 01234679999999999999889999999999999886543
|
| >1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, BIO protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-41 Score=345.75 Aligned_cols=314 Identities=17% Similarity=0.202 Sum_probs=241.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCcccc---------CCccc-hhhhhh--hhcCCCeEEEEecCCC
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIAL---------EPHEE-QGILGE--ALRSGRAHYVSFDLRH 73 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~---------~~~~~-~~~~~~--~~~~~~v~~~~~Dl~d 73 (485)
.+++|||||||||||+++++.|+++| ++|++++|...... ..... ...+.. .....+++++.+|++|
T Consensus 10 ~~~~vlVTG~tGfIG~~l~~~L~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~Dl~d 88 (404)
T 1i24_A 10 HGSRVMVIGGDGYCGWATALHLSKKN-YEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALTGKSIELYVGDICD 88 (404)
T ss_dssp --CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHHCCCCEEEESCTTS
T ss_pred CCCeEEEeCCCcHHHHHHHHHHHhCC-CeEEEEEecCccccccccccccccccchhhhhhhhHhhccCCceEEEECCCCC
Confidence 57899999999999999999999999 59999987532110 00000 000000 1124578999999999
Q ss_pred HHHHHHHhcC--CCEEEEcCCCCC---CCCch---hhhHHHHHHHHHHHHHHHHhcCC-CEEEEecCccccccCCCCcCC
Q 047227 74 KAQVLQALQG--AEVVFHMAAPNS---SINNH---KLHHSVNVEGTKNVIDACAELKV-KRLIYTSSPSVVFDGVHGIIN 144 (485)
Q Consensus 74 ~~~l~~~~~~--~d~Vih~aa~~~---~~~~~---~~~~~~nv~~t~~ll~a~~~~~v-~r~V~~SS~~vy~~~~~~~~~ 144 (485)
++++.+++++ +|+|||+||... ...++ ...+++|+.|+.+++++|++.++ +||||+||.++|+... . +
T Consensus 89 ~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~~~~~V~~SS~~vyg~~~-~--~ 165 (404)
T 1i24_A 89 FEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEFGEECHLVKLGTMGEYGTPN-I--D 165 (404)
T ss_dssp HHHHHHHHHHHCCSEEEECCSCCCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEECCGGGGCCCS-S--C
T ss_pred HHHHHHHHhccCCCEEEECCCCCCccchhhCccchhhhHHHHHHHHHHHHHHHHHhCCCcEEEEeCcHHHhCCCC-C--C
Confidence 9999999987 999999999432 11233 24789999999999999999987 5999999999997543 2 2
Q ss_pred CCCC------------CCCCCCCCchHHHHHHHHHHHHHHHhCCCCceEEEEecCCcccCCCC-----------------
Q 047227 145 GNEA------------LPYPPKHNDFYSATKAEGEALVIKANGTNGLLTCCIRPSSIFGPGDR----------------- 195 (485)
Q Consensus 145 ~~e~------------~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~----------------- 195 (485)
.+|+ .+.+..|.+.|+.+|..+|++++.++..++++++++||++||||+..
T Consensus 166 ~~E~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~ivrp~~v~Gp~~~~~~~~~~~~~~~~~~~~ 245 (404)
T 1i24_A 166 IEEGYITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVKTDETEMHEELRNRLDYDAV 245 (404)
T ss_dssp BCSSEEEEEETTEEEEEECCCCCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECSCCTTGGGSGGGCCCCCCSTT
T ss_pred CCccccccccccccccccCCCCCCChhHHHHHHHHHHHHHHHHhcCCeEEEEecceeeCCCCCccccccccccccccccc
Confidence 2232 11245678899999999999999887777999999999999999862
Q ss_pred --CChHHHHHHHHcCCCeEEecCCCceeecccHHHHHHHHHHHHHHhccccchhhccCC--cEEEeeCCCCccHHHHHHH
Q 047227 196 --LLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICAERALASEVTVAEKAAG--QAYFVTNMESIKFWEFVSL 271 (485)
Q Consensus 196 --~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g--~~ynv~~~~~~t~~el~~~ 271 (485)
..++.++..+..|+++.++|++++.++|+|++|+|++++.+++. +...| ++||+++ +++++.|+++.
T Consensus 246 ~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~a~~~~l~~--------~~~~g~~~~yni~~-~~~s~~e~~~~ 316 (404)
T 1i24_A 246 FGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVEIAIAN--------PAKAGEFRVFNQFT-EQFSVNELASL 316 (404)
T ss_dssp TCCHHHHHHHHHHHTCCEEEETTSCCEEEEEEHHHHHHHHHHHHHS--------CCCTTCEEEEEECS-EEEEHHHHHHH
T ss_pred hhhHHHHHHHHHHcCCeeEEeCCCCceECcEEHHHHHHHHHHHHhC--------cccCCCceEEEECC-CCCcHHHHHHH
Confidence 35778888889999888899999999999999999999999873 22335 7999998 89999999999
Q ss_pred HHHH---cCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCCCCCCCCHHHHHhhccceeeehhhHHhhcCCCCCCChHHH
Q 047227 272 ILEG---LGYQRPRIKIPAFVMMPIAHMVELTYRLLGPYGMKVPQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEG 348 (485)
Q Consensus 272 i~~~---~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~d~~ka~~~lG~~p~~~l~e~ 348 (485)
+.+. +|.+.+....|.+. . ........+|++|++ +|||+|+.+++++
T Consensus 317 i~~~~~~~g~~~~~~~~p~~~----------------------~-------~~~~~~~~~d~~k~~-~LG~~p~~~~~~~ 366 (404)
T 1i24_A 317 VTKAGSKLGLDVKKMTVPNPR----------------------V-------EAEEHYYNAKHTKLM-ELGLEPHYLSDSL 366 (404)
T ss_dssp HHHHHHTTTCCCCEEEECCSS----------------------C-------SCSSCCCCBCCCHHH-HTTCCCCCCCHHH
T ss_pred HHHHHHhhCCCccccccCccc----------------------C-------ccccceEecCHHHHH-HcCCCcCcCHHHH
Confidence 9998 78765544433210 0 001123457999998 5999999999999
Q ss_pred HHHHHHHHHHhHhc
Q 047227 349 IKRTVDSYSHLRAE 362 (485)
Q Consensus 349 i~~~~~~~~~~~~~ 362 (485)
++++++|++...+.
T Consensus 367 l~~~~~~~~~~~~~ 380 (404)
T 1i24_A 367 LDSLLNFAVQFKDR 380 (404)
T ss_dssp HHHHHHHHHHTGGG
T ss_pred HHHHHHHHHhhhhc
Confidence 99999999886654
|
| >2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-41 Score=335.86 Aligned_cols=302 Identities=22% Similarity=0.294 Sum_probs=239.8
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcC
Q 047227 4 EENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQG 83 (485)
Q Consensus 4 ~~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~ 83 (485)
..++|+|||||||||||+++++.|+++| ++|++++|....... . ........+++++.+|+.|+ ++.+
T Consensus 24 ~~~~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~---~---~~~~~~~~~~~~~~~D~~~~-----~~~~ 91 (343)
T 2b69_A 24 EKDRKRILITGGAGFVGSHLTDKLMMDG-HEVTVVDNFFTGRKR---N---VEHWIGHENFELINHDVVEP-----LYIE 91 (343)
T ss_dssp ---CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCSSCCGG---G---TGGGTTCTTEEEEECCTTSC-----CCCC
T ss_pred ccCCCEEEEEcCccHHHHHHHHHHHHCC-CEEEEEeCCCccchh---h---hhhhccCCceEEEeCccCCh-----hhcC
Confidence 3567899999999999999999999999 699999886432110 0 11112245789999999885 3678
Q ss_pred CCEEEEcCCCCC---CCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCccccccCCCCcCCCCCCCC---CCCCCCc
Q 047227 84 AEVVFHMAAPNS---SINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVVFDGVHGIINGNEALP---YPPKHND 157 (485)
Q Consensus 84 ~d~Vih~aa~~~---~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy~~~~~~~~~~~e~~~---~~~~~~~ 157 (485)
+|+|||+|+... ...++...+++|+.++.+++++|++.++ ||||+||.++|+...... .+|+.+ .+..|.+
T Consensus 92 ~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~-~~v~~SS~~v~g~~~~~~--~~E~~~~~~~~~~~~~ 168 (343)
T 2b69_A 92 VDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGA-RLLLASTSEVYGDPEVHP--QSEDYWGHVNPIGPRA 168 (343)
T ss_dssp CSEEEECCSCCSHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTC-EEEEEEEGGGGBSCSSSS--BCTTCCCBCCSSSTTH
T ss_pred CCEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCC-cEEEECcHHHhCCCCCCC--CcccccccCCCCCCCC
Confidence 999999999543 2346778899999999999999999987 999999999997543322 333321 2346778
Q ss_pred hHHHHHHHHHHHHHHHhCCCCceEEEEecCCcccCCCC----CChHHHHHHHHcCCCeEEecCCCceeecccHHHHHHHH
Q 047227 158 FYSATKAEGEALVIKANGTNGLLTCCIRPSSIFGPGDR----LLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAH 233 (485)
Q Consensus 158 ~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~----~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~D~a~a~ 233 (485)
.|+.+|..+|++++.++++.+++++++||+++|||+.. ..++.++..+..++++.+++++++.++|+|++|+|+++
T Consensus 169 ~Y~~sK~~~E~~~~~~~~~~~~~~~ilrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~ 248 (343)
T 2b69_A 169 CYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHMNDGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGL 248 (343)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTCCTTCCCHHHHHHHHHHHTCCEEEESSSCCEEECEEHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhCCcEEEEEEcceeCcCCCCCcccHHHHHHHHHHcCCCceEcCCCCeEEeeEeHHHHHHHH
Confidence 89999999999999987777999999999999999753 45677888888898888899999999999999999999
Q ss_pred HHHHHHhccccchhhccCCcEEEeeCCCCccHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCCCCCC
Q 047227 234 ICAERALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELTYRLLGPYGMKVPQ 313 (485)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~g~~ynv~~~~~~t~~el~~~i~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~ 313 (485)
+.+++. ..+++||+++++++|+.|+++.+.+.+|.+.+...+|.. . ..
T Consensus 249 ~~~~~~----------~~~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~p~~-------------------~-~~-- 296 (343)
T 2b69_A 249 VALMNS----------NVSSPVNLGNPEEHTILEFAQLIKNLVGSGSEIQFLSEA-------------------Q-DD-- 296 (343)
T ss_dssp HHHHTS----------SCCSCEEESCCCEEEHHHHHHHHHHHHTCCCCEEEECCC-------------------T-TC--
T ss_pred HHHHhc----------CCCCeEEecCCCCCcHHHHHHHHHHHhCCCCCceeCCCC-------------------C-CC--
Confidence 988652 236789999999999999999999999987665444321 0 00
Q ss_pred CCHHHHHhhccceeeehhhHHhhcCCCCCCChHHHHHHHHHHHHHhHh
Q 047227 314 LTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSYSHLRA 361 (485)
Q Consensus 314 ~~~~~~~~~~~~~~~d~~ka~~~lG~~p~~~l~e~i~~~~~~~~~~~~ 361 (485)
.....+|++|+++.|||+|.++++|+++++++||++...
T Consensus 297 ---------~~~~~~d~~k~~~~lG~~p~~~l~e~l~~~~~~~~~~~~ 335 (343)
T 2b69_A 297 ---------PQKRKPDIKKAKLMLGWEPVVPLEEGLNKAIHYFRKELE 335 (343)
T ss_dssp ---------CCCCCBCCHHHHHHHCCCCCSCHHHHHHHHHHHHHHHHH
T ss_pred ---------CceecCCHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 113467999999999999999999999999999987654
|
| >1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-41 Score=334.94 Aligned_cols=312 Identities=19% Similarity=0.192 Sum_probs=243.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcC--
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQG-- 83 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~-- 83 (485)
.+|+||||||+||||+++++.|+++| ++|++++|........ ........+++++.+|++|++++.+++++
T Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~------~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~ 80 (357)
T 1rkx_A 8 QGKRVFVTGHTGFKGGWLSLWLQTMG-ATVKGYSLTAPTVPSL------FETARVADGMQSEIGDIRDQNKLLESIREFQ 80 (357)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSCSSSSCH------HHHTTTTTTSEEEECCTTCHHHHHHHHHHHC
T ss_pred CCCEEEEECCCchHHHHHHHHHHhCC-CeEEEEeCCCcccchh------hHhhccCCceEEEEccccCHHHHHHHHHhcC
Confidence 46899999999999999999999999 5999999875422110 11111135789999999999999999986
Q ss_pred CCEEEEcCCCCC---CCCchhhhHHHHHHHHHHHHHHHHhcC-CCEEEEecCccccccCCCCcCCCCCCCCCCCCCCchH
Q 047227 84 AEVVFHMAAPNS---SINNHKLHHSVNVEGTKNVIDACAELK-VKRLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDFY 159 (485)
Q Consensus 84 ~d~Vih~aa~~~---~~~~~~~~~~~nv~~t~~ll~a~~~~~-v~r~V~~SS~~vy~~~~~~~~~~~e~~~~~~~~~~~Y 159 (485)
+|+|||+|+... +..++...+++|+.++.+++++|++.+ ++||||+||.++|+..... .+.+|+. +..|.+.|
T Consensus 81 ~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v~~SS~~vyg~~~~~-~~~~E~~--~~~~~~~Y 157 (357)
T 1rkx_A 81 PEIVFHMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGGVKAVVNITSDKCYDNKEWI-WGYRENE--AMGGYDPY 157 (357)
T ss_dssp CSEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHCCCCEEEEECCGGGBCCCCSS-SCBCTTS--CBCCSSHH
T ss_pred CCEEEECCCCcccccchhCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEecCHHHhCCCCcC-CCCCCCC--CCCCCCcc
Confidence 899999999432 234677889999999999999999987 8999999999999754321 2234433 24678899
Q ss_pred HHHHHHHHHHHHHHhCCC---------CceEEEEecCCcccCCCC---CChHHHHHHHHcCCCeEEecCCCceeecccHH
Q 047227 160 SATKAEGEALVIKANGTN---------GLLTCCIRPSSIFGPGDR---LLVPSLVAAARAGKSKFIIGDGNNVYDFTYVA 227 (485)
Q Consensus 160 ~~sK~~~E~~~~~~~~~~---------g~~~~ilRp~~v~Gp~~~---~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~ 227 (485)
+.+|..+|++++.++.++ +++++++||+++|||++. .+++.++..+..|+++.+ +++++.++|+|++
T Consensus 158 ~~sK~~~e~~~~~~~~~~~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~v~v~ 236 (357)
T 1rkx_A 158 SNSKGCAELVTSSYRNSFFNPANYGQHGTAVATVRAGNVIGGGDWALDRIVPDILRAFEQSQPVII-RNPHAIRPWQHVL 236 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHSCGGGHHHHCCEEEEEECCCEECTTCCCSSCHHHHHHHHHHTTCCEEC-SCTTCEECCEETH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhccccCCceEEEEeeceeeCCCCCccccHHHHHHHHHhcCCCEEE-CCCCCeeccEeHH
Confidence 999999999999887543 899999999999999863 467888888888887655 4678899999999
Q ss_pred HHHHHHHHHHHHhccccchhhccCCcEEEeeCC--CCccHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhC
Q 047227 228 NVAHAHICAERALASEVTVAEKAAGQAYFVTNM--ESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELTYRLLG 305 (485)
Q Consensus 228 D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~--~~~t~~el~~~i~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 305 (485)
|+|++++.+++..... +...+++||++++ +++|+.|+++.+.+.+|.+.+... +..
T Consensus 237 Dva~a~~~~~~~~~~~----~~~~~~~~ni~~~~~~~~s~~e~~~~i~~~~g~~~~~~~-~~~----------------- 294 (357)
T 1rkx_A 237 EPLSGYLLLAQKLYTD----GAEYAEGWNFGPNDADATPVKNIVEQMVKYWGEGASWQL-DGN----------------- 294 (357)
T ss_dssp HHHHHHHHHHHHHHHT----CGGGCSEEECCCCGGGCEEHHHHHHHHHHHHCTTCCEEC---------------------
T ss_pred HHHHHHHHHHHhhhhc----CCCCCceEEECCCCCCcccHHHHHHHHHHHhCCCCcccc-CCC-----------------
Confidence 9999999988742110 0134789999974 689999999999999998654321 110
Q ss_pred CCCCCCCCCCHHHHHhhccceeeehhhHHhhcCCCCCCChHHHHHHHHHHHHHhHhc
Q 047227 306 PYGMKVPQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSYSHLRAE 362 (485)
Q Consensus 306 ~~~~~~p~~~~~~~~~~~~~~~~d~~ka~~~lG~~p~~~l~e~i~~~~~~~~~~~~~ 362 (485)
+ . ........+|++|+++.|||+|.++++|+++++++||++....
T Consensus 295 ------~--~----~~~~~~~~~d~~k~~~~lG~~p~~~l~e~l~~~~~~~~~~~~~ 339 (357)
T 1rkx_A 295 ------A--H----PHEAHYLKLDCSKAKMQLGWHPRWNLNTTLEYIVGWHKNWLSG 339 (357)
T ss_dssp ----------------CCCCCCBCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHTT
T ss_pred ------C--C----CcCcccccCCHHHHHHHhCCCcCCcHHHHHHHHHHHHHHHhcC
Confidence 0 0 0012345689999999999999999999999999999886654
|
| >1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-41 Score=341.04 Aligned_cols=318 Identities=19% Similarity=0.213 Sum_probs=239.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHH-hcCCceEEEeecCCccccC--Cccchhhhh----hhhc---CCC---eEEEEecCCC
Q 047227 7 ERLCVVTGGRGFAARHLVEMLI-RYDMFSVRIADLSDSIALE--PHEEQGILG----EALR---SGR---AHYVSFDLRH 73 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll-~~G~~~V~~~~r~~~~~~~--~~~~~~~~~----~~~~---~~~---v~~~~~Dl~d 73 (485)
+|+||||||+||||+++++.|+ ++| ++|++++|....... .......+. .... ..+ ++++.+|++|
T Consensus 2 ~m~vlVTGatG~iG~~l~~~L~~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d 80 (397)
T 1gy8_A 2 HMRVLVCGGAGYIGSHFVRALLRDTN-HSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEVGDVRN 80 (397)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCC-CEEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEEESCTTC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHhCC-CEEEEEecCCcccccccccchHHHHHHHHHHhhccccccCCceEEEEECCCCC
Confidence 4799999999999999999999 999 599999886532100 000000011 1000 124 8999999999
Q ss_pred HHHHHHHhc--C-CCEEEEcCCCCC---CCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCccccccCCC-----Cc
Q 047227 74 KAQVLQALQ--G-AEVVFHMAAPNS---SINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVVFDGVH-----GI 142 (485)
Q Consensus 74 ~~~l~~~~~--~-~d~Vih~aa~~~---~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy~~~~~-----~~ 142 (485)
++++.++++ + +|+|||+|+... +..++..++++|+.++.+++++|++.++++|||+||.++|+.... ..
T Consensus 81 ~~~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~ll~a~~~~~~~~iv~~SS~~v~g~~~~~~~~~~~ 160 (397)
T 1gy8_A 81 EDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGILRLLQAMLLHKCDKIIFSSSAAIFGNPTMGSVSTNA 160 (397)
T ss_dssp HHHHHHHHHHSCCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGTBSCCC-----CC
T ss_pred HHHHHHHHHhcCCCCEEEECCCccCcCcchhhHHHHHHHHhHHHHHHHHHHHHhCCCEEEEECCHHHhCCCCcccccccc
Confidence 999999997 7 999999999543 234677899999999999999999999999999999999975431 02
Q ss_pred CCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhCCCCceEEEEecCCcccCCC-----------CCChHHHH----HHHHc
Q 047227 143 INGNEALPYPPKHNDFYSATKAEGEALVIKANGTNGLLTCCIRPSSIFGPGD-----------RLLVPSLV----AAARA 207 (485)
Q Consensus 143 ~~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~-----------~~~~~~~~----~~~~~ 207 (485)
.+.+|+.+ ..|.+.|+.+|..+|.+++.++.+++++++++||+++|||+. ..+++.++ ..+..
T Consensus 161 ~~~~E~~~--~~p~~~Y~~sK~~~e~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 238 (397)
T 1gy8_A 161 EPIDINAK--KSPESPYGESKLIAERMIRDCAEAYGIKGICLRYFNACGAHEDGDIGEHYQGSTHLIPIILGRVMSDIAP 238 (397)
T ss_dssp CCBCTTSC--CBCSSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECCCTTSSCSCCSTTCCSHHHHHHHHHHHHHSC
T ss_pred cCcCccCC--CCCCCchHHHHHHHHHHHHHHHHHHCCcEEEEeccceeCCCccccccccccchhHHHHHHHHHHHHHHHh
Confidence 33455443 467889999999999999998877799999999999999963 23444444 13444
Q ss_pred CC------------CeEEec------CCCceeecccHHHHHHHHHHHHHHhccccchhhccCC---cEEEeeCCCCccHH
Q 047227 208 GK------------SKFIIG------DGNNVYDFTYVANVAHAHICAERALASEVTVAEKAAG---QAYFVTNMESIKFW 266 (485)
Q Consensus 208 g~------------~~~~~g------~g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g---~~ynv~~~~~~t~~ 266 (485)
+. ++.++| ++++.++|+|++|+|++++.+++..... .....+ ++||+++++++++.
T Consensus 239 ~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~v~v~Dva~a~~~~l~~~~~~---~~~~~~~~~~~~ni~~~~~~s~~ 315 (397)
T 1gy8_A 239 DQRLTIHEDASTDKRMPIFGTDYPTPDGTCVRDYVHVCDLASAHILALDYVEKL---GPNDKSKYFSVFNLGTSRGYSVR 315 (397)
T ss_dssp C-----------CCCEEEECSCSSSTTSSCEECEEEHHHHHHHHHHHHHHHHTC---CTTTGGGSEEEEEESCSCCEEHH
T ss_pred cCccccccccccCCCceeecCcccCCCCCeeEeeEeHHHHHHHHHHHHhccccc---ccccccCCCcEEEeCCCCcccHH
Confidence 43 466777 7889999999999999999988742211 000013 79999999999999
Q ss_pred HHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCCCCCCCCHHHHHhhccceeeehhhHHhhcCCCCCC-Ch
Q 047227 267 EFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELTYRLLGPYGMKVPQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIV-PL 345 (485)
Q Consensus 267 el~~~i~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~d~~ka~~~lG~~p~~-~l 345 (485)
|+++.+.+.+|.+.+....|.. + . ......+|++|+++.|||+|++ ++
T Consensus 316 e~~~~i~~~~g~~~~~~~~~~~-----------------------~----~----~~~~~~~d~~k~~~~lG~~p~~~~l 364 (397)
T 1gy8_A 316 EVIEVARKTTGHPIPVRECGRR-----------------------E----G----DPAYLVAASDKAREVLGWKPKYDTL 364 (397)
T ss_dssp HHHHHHHHHHCCCCCEEEECCC-----------------------T----T----CCSEECBCCHHHHHHTCCCCSCCSH
T ss_pred HHHHHHHHHhCCCCCeeeCCCC-----------------------C----C----cccccccCHHHHHHHhCCCCCcCCH
Confidence 9999999999987554332210 0 0 0113567999999999999998 99
Q ss_pred HHHHHHHHHHHHHhHh
Q 047227 346 EEGIKRTVDSYSHLRA 361 (485)
Q Consensus 346 ~e~i~~~~~~~~~~~~ 361 (485)
+|+++++++||++...
T Consensus 365 ~e~l~~~~~~~~~~~~ 380 (397)
T 1gy8_A 365 EAIMETSWKFQRTHPN 380 (397)
T ss_dssp HHHHHHHHHHHHTCTT
T ss_pred HHHHHHHHHHHHhccc
Confidence 9999999999987543
|
| >1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG; 1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A* 1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A* 2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A* 1a9y_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-41 Score=331.94 Aligned_cols=308 Identities=23% Similarity=0.226 Sum_probs=233.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc--CCC
Q 047227 8 RLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ--GAE 85 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--~~d 85 (485)
|+||||||+||||+++++.|+++| ++|++++|.......... .+.. ....+++++.+|++|++++.++++ ++|
T Consensus 1 m~vlVTGatG~iG~~l~~~L~~~G-~~V~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~Dl~~~~~~~~~~~~~~~D 75 (338)
T 1udb_A 1 MRVLVTGGSGYIGSHTCVQLLQNG-HDVIILDNLCNSKRSVLP---VIER-LGGKHPTFVEGDIRNEALMTEILHDHAID 75 (338)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCSSCCTTHHH---HHHH-HHTSCCEEEECCTTCHHHHHHHHHHTTCS
T ss_pred CEEEEECCCCHHHHHHHHHHHHCC-CEEEEEecCCCcchhHHH---HHHh-hcCCcceEEEccCCCHHHHHHHhhccCCC
Confidence 589999999999999999999999 589988875331111000 0111 113468899999999999999987 599
Q ss_pred EEEEcCCCCC---CCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCccccccCCCCcCCCCCCCCCCCCCCchHHHH
Q 047227 86 VVFHMAAPNS---SINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDFYSAT 162 (485)
Q Consensus 86 ~Vih~aa~~~---~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy~~~~~~~~~~~e~~~~~~~~~~~Y~~s 162 (485)
+|||+|+... ...++...+++|+.++.+++++|++.++++|||+||.++|+.... .+.+|+.+. ..+.+.|+.+
T Consensus 76 ~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~SS~~~~g~~~~--~~~~e~~~~-~~~~~~Y~~s 152 (338)
T 1udb_A 76 TVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIFSSSATVYGDNPK--IPYVESFPT-GTPQSPYGKS 152 (338)
T ss_dssp EEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEGGGGCSCCS--SSBCTTSCC-CCCSSHHHHH
T ss_pred EEEECCccCccccchhcHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEccHHHhCCCCC--CCcCcccCC-CCCCChHHHH
Confidence 9999999432 224567789999999999999999999999999999999974332 233444431 1237899999
Q ss_pred HHHHHHHHHHHhCCC-CceEEEEecCCcccCCC------------CCChHHHHHHHH-cCCCeEEec------CCCceee
Q 047227 163 KAEGEALVIKANGTN-GLLTCCIRPSSIFGPGD------------RLLVPSLVAAAR-AGKSKFIIG------DGNNVYD 222 (485)
Q Consensus 163 K~~~E~~~~~~~~~~-g~~~~ilRp~~v~Gp~~------------~~~~~~~~~~~~-~g~~~~~~g------~g~~~~~ 222 (485)
|..+|++++.++.++ +++++++||+++|||+. ..+++.+...+. .+..+.++| +|++.++
T Consensus 153 K~~~e~~~~~~~~~~~~~~~~ilR~~~v~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~ 232 (338)
T 1udb_A 153 KLMVEQILTDLQKAQPDWSIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRD 232 (338)
T ss_dssp HHHHHHHHHHHHHHSTTCEEEEEEECEEECCCTTSSSCCCCCSSCCSHHHHHHHHHHTSSSCEEEECSCSSSSSSSCEEC
T ss_pred HHHHHHHHHHHHHhcCCCceEEEeeceecCCCcccccccccccchhhHHHHHHHHHHhcCCCcEEecCcccCCCCceeee
Confidence 999999999987655 89999999999999842 123455555554 455566665 5778999
Q ss_pred cccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCCCccHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHH
Q 047227 223 FTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELTYR 302 (485)
Q Consensus 223 ~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~~t~~el~~~i~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~ 302 (485)
|+|++|+|++++.+++..... ..+++||+++++++|+.|+++.+.+.+|.+.+....|..
T Consensus 233 ~i~v~Dva~a~~~~l~~~~~~------~~~~~yni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~-------------- 292 (338)
T 1udb_A 233 YIHVMDLADGHVVAMEKLANK------PGVHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPRR-------------- 292 (338)
T ss_dssp EEEHHHHHHHHHHHHHHHTTC------CEEEEEEESCSCCEEHHHHHHHHHHHHTSCCCEEEECCC--------------
T ss_pred eEEHHHHHHHHHHHHhhhhcc------CCCcEEEecCCCceeHHHHHHHHHHHhCCCCcceeCCCC--------------
Confidence 999999999999988742111 223799999999999999999999999986554332210
Q ss_pred HhCCCCCCCCCCCHHHHHhhccceeeehhhHHhhcCCCCCCChHHHHHHHHHHHHHhH
Q 047227 303 LLGPYGMKVPQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSYSHLR 360 (485)
Q Consensus 303 ~~~~~~~~~p~~~~~~~~~~~~~~~~d~~ka~~~lG~~p~~~l~e~i~~~~~~~~~~~ 360 (485)
+ . ......+|++|++++|||+|+++++|+++++++||++..
T Consensus 293 ---------~----~----~~~~~~~d~~k~~~~lG~~p~~~l~~~l~~~~~w~~~~~ 333 (338)
T 1udb_A 293 ---------E----G----DLPAYWADASKADRELNWRVTRTLDEMAQDTWHWQSRHP 333 (338)
T ss_dssp ---------T----T----CCSBCCBCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHCT
T ss_pred ---------C----C----chhhhhcCHHHHHHHcCCCcCCCHHHHHHHHHHHHHhcc
Confidence 0 0 001345799999999999999999999999999998743
|
| >1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET: TYD NAD; 1.80A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1g1a_A* 1keu_A* 1bxk_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-41 Score=336.95 Aligned_cols=313 Identities=25% Similarity=0.280 Sum_probs=244.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHhc-CCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc--CC
Q 047227 8 RLCVVTGGRGFAARHLVEMLIRY-DMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ--GA 84 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~~-G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--~~ 84 (485)
|+||||||+||||+++++.|+++ | ++|++++|..... .... +.......+++++.+|++|++++.++++ ++
T Consensus 1 MkvlVTGasG~iG~~l~~~L~~~~g-~~V~~~~r~~~~~--~~~~---~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 74 (361)
T 1kew_A 1 MKILITGGAGFIGSAVVRHIIKNTQ-DTVVNIDKLTYAG--NLES---LSDISESNRYNFEHADICDSAEITRIFEQYQP 74 (361)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHHCS-CEEEEEECCCTTC--CGGG---GTTTTTCTTEEEEECCTTCHHHHHHHHHHHCC
T ss_pred CEEEEECCCchHhHHHHHHHHhcCC-CeEEEEecCCCCC--chhh---hhhhhcCCCeEEEECCCCCHHHHHHHHhhcCC
Confidence 58999999999999999999998 6 6999998864211 0000 1111123579999999999999999998 89
Q ss_pred CEEEEcCCCCC---CCCchhhhHHHHHHHHHHHHHHHHhc--CCC-------EEEEecCccccccCCCCc--------CC
Q 047227 85 EVVFHMAAPNS---SINNHKLHHSVNVEGTKNVIDACAEL--KVK-------RLIYTSSPSVVFDGVHGI--------IN 144 (485)
Q Consensus 85 d~Vih~aa~~~---~~~~~~~~~~~nv~~t~~ll~a~~~~--~v~-------r~V~~SS~~vy~~~~~~~--------~~ 144 (485)
|+|||+|+... +..++...+++|+.++.+++++|++. +++ ||||+||.++|+...... .+
T Consensus 75 d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~v~~~~~~~~~iv~~SS~~v~g~~~~~~~~~~~~~~~~ 154 (361)
T 1kew_A 75 DAVMHLAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPL 154 (361)
T ss_dssp SEEEECCSCCCHHHHHHCTHHHHHHHTHHHHHHHHHHHHHHHTSCHHHHHHCEEEEEEEGGGGCCCCCGGGSCTTSCCCC
T ss_pred CEEEECCCCcChhhhhhCHHHHHHHHHHHHHHHHHHHHHhccCcccccccCceEEEeCCHHHhCCCcccccccccccCCC
Confidence 99999999543 23467789999999999999999998 887 999999999997432110 13
Q ss_pred CCCCCCCCCCCCchHHHHHHHHHHHHHHHhCCCCceEEEEecCCcccCCCC--CChHHHHHHHHcCCCeEEecCCCceee
Q 047227 145 GNEALPYPPKHNDFYSATKAEGEALVIKANGTNGLLTCCIRPSSIFGPGDR--LLVPSLVAAARAGKSKFIIGDGNNVYD 222 (485)
Q Consensus 145 ~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~--~~~~~~~~~~~~g~~~~~~g~g~~~~~ 222 (485)
.+|+.+ ..|.+.|+.+|..+|.+++.++.+++++++++||+++|||+.. .+++.++..+..++++.+++++++.++
T Consensus 155 ~~E~~~--~~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (361)
T 1kew_A 155 FTETTA--YAPSSPYSASKASSDHLVRAWRRTYGLPTIVTNCSNNYGPYHFPEKLIPLVILNALEGKPLPIYGKGDQIRD 232 (361)
T ss_dssp BCTTSC--CCCCSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEESTTCCTTSHHHHHHHHHHHTCCEEEETTSCCEEE
T ss_pred CCCCCC--CCCCCccHHHHHHHHHHHHHHHHHhCCcEEEEeeceeECCCCCcccHHHHHHHHHHcCCCceEcCCCceeEe
Confidence 344433 4678899999999999999988777999999999999999864 456777888888888888899999999
Q ss_pred cccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCCCccHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHH
Q 047227 223 FTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELTYR 302 (485)
Q Consensus 223 ~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~~t~~el~~~i~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~ 302 (485)
|+|++|+|++++.+++. + ..|++||+++++++++.|+++.+.+.+|.+.+... |.. .
T Consensus 233 ~i~v~Dva~a~~~~~~~--------~-~~g~~~~v~~~~~~s~~e~~~~i~~~~g~~~~~~~-p~~-------------~ 289 (361)
T 1kew_A 233 WLYVEDHARALHMVVTE--------G-KAGETYNIGGHNEKKNLDVVFTICDLLDEIVPKAT-SYR-------------E 289 (361)
T ss_dssp EEEHHHHHHHHHHHHHH--------C-CTTCEEEECCCCEEEHHHHHHHHHHHHHHHSCCSS-CGG-------------G
T ss_pred eEEHHHHHHHHHHHHhC--------C-CCCCEEEecCCCeeeHHHHHHHHHHHhCCcCcccc-ccc-------------c
Confidence 99999999999998763 1 45789999999999999999999999987544321 210 0
Q ss_pred HhCCCCCCCCCCCHHHHHhhccceeeehhhHHhhcCCCCCCChHHHHHHHHHHHHHhH
Q 047227 303 LLGPYGMKVPQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSYSHLR 360 (485)
Q Consensus 303 ~~~~~~~~~p~~~~~~~~~~~~~~~~d~~ka~~~lG~~p~~~l~e~i~~~~~~~~~~~ 360 (485)
.... ....+. ......+|++|+++.|||+|.++++|+++++++||++..
T Consensus 290 ~~~~-~~~~~~--------~~~~~~~d~~k~~~~lG~~p~~~~~e~l~~~~~~~~~~~ 338 (361)
T 1kew_A 290 QITY-VADRPG--------HDRRYAIDAGKISRELGWKPLETFESGIRKTVEWYLANT 338 (361)
T ss_dssp GEEE-ECCCTT--------CCCBCCBCCHHHHHHHCCCCSCCHHHHHHHHHHHHHHCH
T ss_pred ceee-cCCCCc--------ccceeecCHHHHHHHhCCCCccCHHHHHHHHHHHHHhcc
Confidence 0000 000000 012346799999999999999999999999999998753
|
| >2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-41 Score=331.13 Aligned_cols=298 Identities=16% Similarity=0.126 Sum_probs=230.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhc--CCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc--
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRY--DMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ-- 82 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~--G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 82 (485)
+|+|||||||||||+++++.|+++ | ++|++++|..... . . .++++++.+|++|++++.++++
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~~~g-~~V~~~~r~~~~~-----~---~-----~~~~~~~~~D~~d~~~~~~~~~~~ 67 (312)
T 2yy7_A 2 NPKILIIGACGQIGTELTQKLRKLYGT-ENVIASDIRKLNT-----D---V-----VNSGPFEVVNALDFNQIEHLVEVH 67 (312)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHHHHCG-GGEEEEESCCCSC-----H---H-----HHSSCEEECCTTCHHHHHHHHHHT
T ss_pred CceEEEECCccHHHHHHHHHHHHhCCC-CEEEEEcCCCccc-----c---c-----cCCCceEEecCCCHHHHHHHHhhc
Confidence 378999999999999999999999 7 6899998865421 0 0 1257889999999999999998
Q ss_pred CCCEEEEcCCCCC--CCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCccccccCCCCcCCCCCCCCCCCCCCchHH
Q 047227 83 GAEVVFHMAAPNS--SINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDFYS 160 (485)
Q Consensus 83 ~~d~Vih~aa~~~--~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy~~~~~~~~~~~e~~~~~~~~~~~Y~ 160 (485)
++|+|||+|+... ...++...+++|+.++.+++++|++.+++||||+||.++|+..... .+.+|+. +..|.+.|+
T Consensus 68 ~~d~vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~-~~~~e~~--~~~~~~~Y~ 144 (312)
T 2yy7_A 68 KITDIYLMAALLSATAEKNPAFAWDLNMNSLFHVLNLAKAKKIKKIFWPSSIAVFGPTTPK-ENTPQYT--IMEPSTVYG 144 (312)
T ss_dssp TCCEEEECCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHTTSCSEEECCEEGGGCCTTSCS-SSBCSSC--BCCCCSHHH
T ss_pred CCCEEEECCccCCCchhhChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccHHHhCCCCCC-CCccccC--cCCCCchhH
Confidence 8999999999532 2356778899999999999999999999999999999999753321 2334443 356789999
Q ss_pred HHHHHHHHHHHHHhCCCCceEEEEecCCcccCCCC------C-ChHHHHHHHHcCCCeEEecCCCceeecccHHHHHHHH
Q 047227 161 ATKAEGEALVIKANGTNGLLTCCIRPSSIFGPGDR------L-LVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAH 233 (485)
Q Consensus 161 ~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~------~-~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~D~a~a~ 233 (485)
.+|..+|.+++.++.+++++++++||+++|||+.. . ..+.+...+ .+++..+++++++.++|+|++|+|+++
T Consensus 145 ~sK~~~e~~~~~~~~~~~~~~~~lrp~~v~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~v~Dva~a~ 223 (312)
T 2yy7_A 145 ISKQAGERWCEYYHNIYGVDVRSIRYPGLISWSTPPGGGTTDYAVDIFYKAI-ADKKYECFLSSETKMPMMYMDDAIDAT 223 (312)
T ss_dssp HHHHHHHHHHHHHHHHHCCEEECEEECEEECSSSCCCSCTTTHHHHHHHHHH-HTSEEEESSCTTCCEEEEEHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCcEEEEeCCeEecCCCCCCCchhhhHHHHHHHHH-cCCCeEEecCCCceeeeeeHHHHHHHH
Confidence 99999999999987777999999999999997531 1 233344444 445567788889999999999999999
Q ss_pred HHHHHHhccccchhhccCCcEEEeeCCCCccHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCCCCCC
Q 047227 234 ICAERALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELTYRLLGPYGMKVPQ 313 (485)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~g~~ynv~~~~~~t~~el~~~i~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~ 313 (485)
+.+++..... ...+++||+++ +++|+.|+++.+.+.+|. .+....|.
T Consensus 224 ~~~~~~~~~~-----~~~~~~~ni~~-~~~s~~e~~~~i~~~~~~-~~i~~~~~-------------------------- 270 (312)
T 2yy7_A 224 INIMKAPVEK-----IKIHSSYNLAA-MSFTPTEIANEIKKHIPE-FTITYEPD-------------------------- 270 (312)
T ss_dssp HHHHHSCGGG-----CCCSSCEECCS-EEECHHHHHHHHHTTCTT-CEEEECCC--------------------------
T ss_pred HHHHhCcccc-----cccCceEEeCC-CccCHHHHHHHHHHHCCC-CceEeccC--------------------------
Confidence 9998742110 01248999997 899999999999999883 11111110
Q ss_pred CCHHHHHhhccceeeehhhHHhhcCCCCCCChHHHHHHHHHHHH
Q 047227 314 LTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSYS 357 (485)
Q Consensus 314 ~~~~~~~~~~~~~~~d~~ka~~~lG~~p~~~l~e~i~~~~~~~~ 357 (485)
.+... .......+|++|+++.|||+|+++++|+++++++||+
T Consensus 271 -~~~~~-~~~~~~~~d~~k~~~~lG~~p~~~l~~~l~~~~~~~k 312 (312)
T 2yy7_A 271 -FRQKI-ADSWPASIDDSQAREDWDWKHTFDLESMTKDMIEHLS 312 (312)
T ss_dssp -THHHH-HTTSCSSBCCHHHHHHHCCCCCCCHHHHHHHHHHHHC
T ss_pred -ccccc-cccccccCCHHHHHHHcCCCCCCCHHHHHHHHHHHhC
Confidence 01111 1112346899999999999999999999999999984
|
| >2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-40 Score=333.91 Aligned_cols=296 Identities=17% Similarity=0.191 Sum_probs=236.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc---
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ--- 82 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 82 (485)
++|+|||||||||||+++++.|+++|.++|++++|...... .. . ..++. +.+|++|.+.+.++++
T Consensus 45 ~~~~vlVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~--------~~-~--~~~~~-~~~d~~~~~~~~~~~~~~~ 112 (357)
T 2x6t_A 45 EGRMIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTK--------FV-N--LVDLN-IADYMDKEDFLIQIMAGEE 112 (357)
T ss_dssp ---CEEEETTTSHHHHHHHHHHHHTTCCCEEEEECCSSGGG--------GG-G--TTTSC-CSEEEEHHHHHHHHHTTCC
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCcEEEEEecCCCcch--------hh-c--ccCce-EeeecCcHHHHHHHHhhcc
Confidence 35899999999999999999999999458999988654210 00 0 11233 6789999999999987
Q ss_pred --CCCEEEEcCCCCC-CCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCccccccCCCCcCCCCCCCCCCCCCCchH
Q 047227 83 --GAEVVFHMAAPNS-SINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDFY 159 (485)
Q Consensus 83 --~~d~Vih~aa~~~-~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy~~~~~~~~~~~e~~~~~~~~~~~Y 159 (485)
++|+|||+|+... ...++...+++|+.++.+++++|++.++ ||||+||.++|+..... +.+|+. +..|.+.|
T Consensus 113 ~~~~d~Vih~A~~~~~~~~~~~~~~~~n~~~~~~ll~a~~~~~~-r~V~~SS~~v~g~~~~~--~~~E~~--~~~p~~~Y 187 (357)
T 2x6t_A 113 FGDVEAIFHEGACSSTTEWDGKYMMDNNYQYSKELLHYCLEREI-PFLYASSAATYGGRTSD--FIESRE--YEKPLNVF 187 (357)
T ss_dssp CSSCCEEEECCSCCCTTCCCHHHHHHHTHHHHHHHHHHHHHHTC-CEEEEEEGGGGCSCSSC--CCSSGG--GCCCSSHH
T ss_pred cCCCCEEEECCcccCCccCCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEcchHHhCCCCCC--CcCCcC--CCCCCChh
Confidence 5999999999433 4567888999999999999999999999 99999999999754332 334443 35678899
Q ss_pred HHHHHHHHHHHHHHhCCCCceEEEEecCCcccCCCC------CChHHHHHHHHcCCCeEEecCCCc-eeecccHHHHHHH
Q 047227 160 SATKAEGEALVIKANGTNGLLTCCIRPSSIFGPGDR------LLVPSLVAAARAGKSKFIIGDGNN-VYDFTYVANVAHA 232 (485)
Q Consensus 160 ~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~------~~~~~~~~~~~~g~~~~~~g~g~~-~~~~i~v~D~a~a 232 (485)
+.+|..+|++++.++.+.+++++++||+++|||+.. ..++.++..+..++++.+++++++ .++|+|++|+|++
T Consensus 188 ~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a 267 (357)
T 2x6t_A 188 GYSKFLFDEYVRQILPEANSQIVGFRYFNVYGPREGHKGSMASVAFHLNTQLNNGESPKLFEGSENFKRDFVYVGDVADV 267 (357)
T ss_dssp HHHHHHHHHHHHHHGGGCSSCEEEEEECEEESSSCTTCGGGSCHHHHHHHHHHTTCCCEEETTGGGCEECEEEHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEecCeEECCCCCCCcccchHHHHHHHHHHcCCCcEEeCCCCcceEccEEHHHHHHH
Confidence 999999999999998888999999999999999864 456778888888988888999989 9999999999999
Q ss_pred HHHHHHHhccccchhhccCCcEEEeeCCCCccHHHHHHHHHHHcCCC-CCCccCCHHHHHHHHHHHHHHHHHhCCCCCCC
Q 047227 233 HICAERALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQ-RPRIKIPAFVMMPIAHMVELTYRLLGPYGMKV 311 (485)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~~t~~el~~~i~~~~g~~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (485)
++.+++. + . +++||+++++++++.|+++.+.+.+|.+ .+....|.+.
T Consensus 268 i~~~~~~--------~-~-~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~---------------------- 315 (357)
T 2x6t_A 268 NLWFLEN--------G-V-SGIFNLGTGRAESFQAVADATLAYHKKGQIEYIPFPDKL---------------------- 315 (357)
T ss_dssp HHHHHHH--------C-C-CEEEEESCSCCEEHHHHHHHHHHHHTCCCCEEECCCGGG----------------------
T ss_pred HHHHHhc--------C-C-CCeEEecCCCcccHHHHHHHHHHHcCCCCceecCCCccc----------------------
Confidence 9998773 2 2 7899999999999999999999999987 2223332210
Q ss_pred CCCCHHHHHhhccceeeehhhHHhhcCC-CCCCChHHHHHHHHHHHHH
Q 047227 312 PQLTPSRVRLLSCSRTFDCSKAKDLLGY-MPIVPLEEGIKRTVDSYSH 358 (485)
Q Consensus 312 p~~~~~~~~~~~~~~~~d~~ka~~~lG~-~p~~~l~e~i~~~~~~~~~ 358 (485)
.........+|++|+++ ||| .|..+++|+++++++||++
T Consensus 316 -------~~~~~~~~~~~~~k~~~-lG~~~~~~~l~e~l~~~~~~~~~ 355 (357)
T 2x6t_A 316 -------KGRYQAFTQADLTNLRA-AGYDKPFKTVAEGVTEYMAWLNR 355 (357)
T ss_dssp -------TTSCCSBCCCCCHHHHH-TTCCCCCCCHHHHHHHHHHHHC-
T ss_pred -------ccccccccccCHHHHHH-cCCCCCCCCHHHHHHHHHHHHhh
Confidence 00111234579999987 999 7888999999999999965
|
| >1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-41 Score=329.67 Aligned_cols=293 Identities=18% Similarity=0.201 Sum_probs=216.3
Q ss_pred EEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcC-----
Q 047227 9 LCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQG----- 83 (485)
Q Consensus 9 ~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~----- 83 (485)
+|||||||||||+++++.|+++|.++|++++|...... ... + ++++ +.+|++|.+.+.+++++
T Consensus 1 ~vlVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~--------~~~-~--~~~~-~~~d~~~~~~~~~~~~~~~~~~ 68 (310)
T 1eq2_A 1 MIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTK--------FVN-L--VDLN-IADYMDKEDFLIQIMAGEEFGD 68 (310)
T ss_dssp CEEEETTTSHHHHHHHHHHHTTTCCCEEEEECCSSGGG--------GHH-H--HTSC-CSEEEEHHHHHHHHHTTCCCSS
T ss_pred CEEEEcCccHHHHHHHHHHHHCCCcEEEEEccCCCCch--------hhh-c--Ccce-eccccccHHHHHHHHhccccCC
Confidence 48999999999999999999999448999988654210 000 1 1223 67899999999999975
Q ss_pred CCEEEEcCCCCC-CCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCccccccCCCCcCCCCCCCCCCCCCCchHHHH
Q 047227 84 AEVVFHMAAPNS-SINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDFYSAT 162 (485)
Q Consensus 84 ~d~Vih~aa~~~-~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy~~~~~~~~~~~e~~~~~~~~~~~Y~~s 162 (485)
+|+|||+|+... ...++...+++|+.++.+++++|++.++ ||||+||.++|+..... +.+|+. +..|.+.|+.+
T Consensus 69 ~d~vi~~a~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~-~~v~~SS~~v~g~~~~~--~~~E~~--~~~p~~~Y~~s 143 (310)
T 1eq2_A 69 VEAIFHEGACSSTTEWDGKYMMDNNYQYSKELLHYCLEREI-PFLYASSAATYGGRTSD--FIESRE--YEKPLNVYGYS 143 (310)
T ss_dssp CCEEEECCSCCCTTCCCHHHHHHHTHHHHHHHHHHHHHHTC-CEEEEEEGGGGTTCCSC--BCSSGG--GCCCSSHHHHH
T ss_pred CcEEEECcccccCcccCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEeeHHHhCCCCCC--CCCCCC--CCCCCChhHHH
Confidence 999999999433 4567888999999999999999999999 99999999999754332 334443 35678899999
Q ss_pred HHHHHHHHHHHhCCCCceEEEEecCCcccCCCC------CChHHHHHHHHcCCCeEEecCCCc-eeecccHHHHHHHHHH
Q 047227 163 KAEGEALVIKANGTNGLLTCCIRPSSIFGPGDR------LLVPSLVAAARAGKSKFIIGDGNN-VYDFTYVANVAHAHIC 235 (485)
Q Consensus 163 K~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~------~~~~~~~~~~~~g~~~~~~g~g~~-~~~~i~v~D~a~a~~~ 235 (485)
|..+|.+++.++.+.+++++++||+++|||+.. .+++.++..+..++++.+++++++ .++|+|++|+|++++.
T Consensus 144 K~~~e~~~~~~~~~~g~~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~i~v~Dva~~~~~ 223 (310)
T 1eq2_A 144 KFLFDEYVRQILPEANSQIVGFRYFNVYGPREGHKGSMASVAFHLNTQLNNGESPKLFEGSENFKRDFVYVGDVADVNLW 223 (310)
T ss_dssp HHHHHHHHHHHGGGCSSCEEEEEECEEESSSCGGGGGGSCHHHHHHHHHHC-------------CBCEEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcEECcCCCCCCccchHHHHHHHHHHcCCCcEEecCCCcceEccEEHHHHHHHHHH
Confidence 999999999998888999999999999999864 467778888889988888889988 9999999999999999
Q ss_pred HHHHhccccchhhccCCcEEEeeCCCCccHHHHHHHHHHHcCCC-CCCccCCHHHHHHHHHHHHHHHHHhCCCCCCCCCC
Q 047227 236 AERALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQ-RPRIKIPAFVMMPIAHMVELTYRLLGPYGMKVPQL 314 (485)
Q Consensus 236 ~~~~~~~~~~~~~~~~g~~ynv~~~~~~t~~el~~~i~~~~g~~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 314 (485)
+++. + . +++||+++++++|+.|+++.+.+.+|.+ .+....|.+
T Consensus 224 ~~~~--------~-~-~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~-------------------------- 267 (310)
T 1eq2_A 224 FLEN--------G-V-SGIFNLGTGRAESFQAVADATLAYHKKGQIEYIPFPDK-------------------------- 267 (310)
T ss_dssp HHHH--------C-C-CEEEEESCSCCBCHHHHHHHC-------------------------------------------
T ss_pred HHhc--------C-C-CCeEEEeCCCccCHHHHHHHHHHHcCCCCceeCCCChh--------------------------
Confidence 8773 2 2 7899999999999999999999999876 222211110
Q ss_pred CHHHHHhhccceeeehhhHHhhcCC-CCCCChHHHHHHHHHHHHH
Q 047227 315 TPSRVRLLSCSRTFDCSKAKDLLGY-MPIVPLEEGIKRTVDSYSH 358 (485)
Q Consensus 315 ~~~~~~~~~~~~~~d~~ka~~~lG~-~p~~~l~e~i~~~~~~~~~ 358 (485)
..........+|++|+++ ||| +|..+++|+++++++||++
T Consensus 268 ---~~~~~~~~~~~~~~~~~~-lG~~~~~~~l~~~l~~~~~~~~~ 308 (310)
T 1eq2_A 268 ---LKGRYQAFTQADLTNLRA-AGYDKPFKTVAEGVTEYMAWLNR 308 (310)
T ss_dssp -------CCCSCCBCCHHHHH-TTCCCCCCCHHHHHHHHHHHTC-
T ss_pred ---hhcccccccccchHHHHh-cCCCCCCCCHHHHHHHHHHHHHh
Confidence 000111234579999987 999 7888999999999999965
|
| >3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-40 Score=322.10 Aligned_cols=276 Identities=20% Similarity=0.264 Sum_probs=230.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc--CCC
Q 047227 8 RLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ--GAE 85 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--~~d 85 (485)
|+|||||||||||+++++.|+++| ++|++++|. .+|++|.+++.++++ ++|
T Consensus 6 m~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~--------------------------~~D~~d~~~~~~~~~~~~~d 58 (287)
T 3sc6_A 6 ERVIITGANGQLGKQLQEELNPEE-YDIYPFDKK--------------------------LLDITNISQVQQVVQEIRPH 58 (287)
T ss_dssp EEEEEESTTSHHHHHHHHHSCTTT-EEEEEECTT--------------------------TSCTTCHHHHHHHHHHHCCS
T ss_pred eEEEEECCCCHHHHHHHHHHHhCC-CEEEEeccc--------------------------ccCCCCHHHHHHHHHhcCCC
Confidence 499999999999999999999999 699999873 279999999999998 699
Q ss_pred EEEEcCCCCC---CCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCccccccCCCCcCCCCCCCCCCCCCCchHHHH
Q 047227 86 VVFHMAAPNS---SINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDFYSAT 162 (485)
Q Consensus 86 ~Vih~aa~~~---~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy~~~~~~~~~~~e~~~~~~~~~~~Y~~s 162 (485)
+|||+|+... ...++...+++|+.++.+++++|++.++ ||||+||.++|++.... +.+|+.+ ..|.+.|+.+
T Consensus 59 ~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~v~~SS~~vy~~~~~~--~~~E~~~--~~p~~~Y~~s 133 (287)
T 3sc6_A 59 IIIHCAAYTKVDQAEKERDLAYVINAIGARNVAVASQLVGA-KLVYISTDYVFQGDRPE--GYDEFHN--PAPINIYGAS 133 (287)
T ss_dssp EEEECCCCCCHHHHTTCHHHHHHHHTHHHHHHHHHHHHHTC-EEEEEEEGGGSCCCCSS--CBCTTSC--CCCCSHHHHH
T ss_pred EEEECCcccChHHHhcCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEchhhhcCCCCCC--CCCCCCC--CCCCCHHHHH
Confidence 9999999543 2357888999999999999999999998 79999999999754333 3445443 5788999999
Q ss_pred HHHHHHHHHHHhCCCCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCceeecccHHHHHHHHHHHHHHhcc
Q 047227 163 KAEGEALVIKANGTNGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICAERALAS 242 (485)
Q Consensus 163 K~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~D~a~a~~~~~~~~~~ 242 (485)
|..+|++++.++. +++++||+++|||+.+.+++.++..+..++++.+.|+ +.++|+|++|+|++++.+++.
T Consensus 134 K~~~E~~~~~~~~----~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~v~Dva~~~~~~~~~--- 204 (287)
T 3sc6_A 134 KYAGEQFVKELHN----KYFIVRTSWLYGKYGNNFVKTMIRLGKEREEISVVAD--QIGSPTYVADLNVMINKLIHT--- 204 (287)
T ss_dssp HHHHHHHHHHHCS----SEEEEEECSEECSSSCCHHHHHHHHHTTCSEEEEECS--CEECCEEHHHHHHHHHHHHTS---
T ss_pred HHHHHHHHHHhCC----CcEEEeeeeecCCCCCcHHHHHHHHHHcCCCeEeecC--cccCceEHHHHHHHHHHHHhC---
Confidence 9999999999764 5799999999999888888889988888988888765 889999999999999998762
Q ss_pred ccchhhccCCcEEEeeCCCCccHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCCCCCCCCHHHHHhh
Q 047227 243 EVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELTYRLLGPYGMKVPQLTPSRVRLL 322 (485)
Q Consensus 243 ~~~~~~~~~g~~ynv~~~~~~t~~el~~~i~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 322 (485)
+ .+++||+++++++|+.|+++.+.+.+|.+.+...+|.... ..+.. .
T Consensus 205 -----~--~~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~-------------------~~~~~-------~ 251 (287)
T 3sc6_A 205 -----S--LYGTYHVSNTGSCSWFEFAKKIFSYANMKVNVLPVSTEEF-------------------GAAAA-------R 251 (287)
T ss_dssp -----C--CCEEEECCCBSCEEHHHHHHHHHHHHTCCCEEEEECHHHH-------------------CCSSC-------C
T ss_pred -----C--CCCeEEEcCCCcccHHHHHHHHHHHcCCCcceeeeehhhc-------------------CcccC-------C
Confidence 2 2779999999999999999999999998876666654311 00000 0
Q ss_pred ccceeeehhhHHhhcCCCCCCChHHHHHHHHHHHHH
Q 047227 323 SCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSYSH 358 (485)
Q Consensus 323 ~~~~~~d~~ka~~~lG~~p~~~l~e~i~~~~~~~~~ 358 (485)
.....+|++|++ .|||+|..+++|+++++++|+++
T Consensus 252 ~~~~~~d~~k~~-~lg~~p~~~~~~~l~~~~~~~~~ 286 (287)
T 3sc6_A 252 PKYSIFQHNMLR-LNGFLQMPSWEEGLERFFIETKS 286 (287)
T ss_dssp CSBCCBCCHHHH-HTTCCCCCBHHHHHHHHHHHTC-
T ss_pred CCcccccHHHHH-hhCCCCCccHHHHHHHHHHHHhc
Confidence 123467999999 79999999999999999999854
|
| >3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-41 Score=325.08 Aligned_cols=278 Identities=17% Similarity=0.169 Sum_probs=221.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcC-CC
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQG-AE 85 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~-~d 85 (485)
+|+||||| +||||+++++.|+++| ++|++++|.... ..++++++.+|++|++++.+++++ +|
T Consensus 3 ~~~ilVtG-aG~iG~~l~~~L~~~g-~~V~~~~r~~~~---------------~~~~~~~~~~Dl~d~~~~~~~~~~~~d 65 (286)
T 3gpi_A 3 LSKILIAG-CGDLGLELARRLTAQG-HEVTGLRRSAQP---------------MPAGVQTLIADVTRPDTLASIVHLRPE 65 (286)
T ss_dssp CCCEEEEC-CSHHHHHHHHHHHHTT-CCEEEEECTTSC---------------CCTTCCEEECCTTCGGGCTTGGGGCCS
T ss_pred CCcEEEEC-CCHHHHHHHHHHHHCC-CEEEEEeCCccc---------------cccCCceEEccCCChHHHHHhhcCCCC
Confidence 57999999 6999999999999999 599999987542 125789999999999999999988 99
Q ss_pred EEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCccccccCCCCcCCCCCCCCCCCCCCchHHHHHHH
Q 047227 86 VVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDFYSATKAE 165 (485)
Q Consensus 86 ~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy~~~~~~~~~~~e~~~~~~~~~~~Y~~sK~~ 165 (485)
+|||+|+.. ..++...+++|+.++.+++++|++.+++||||+||.++|+..... +.+|+.+ ..|.+.|+.+|..
T Consensus 66 ~vih~a~~~--~~~~~~~~~~n~~~~~~ll~a~~~~~~~~~v~~SS~~vyg~~~~~--~~~E~~~--~~p~~~Y~~sK~~ 139 (286)
T 3gpi_A 66 ILVYCVAAS--EYSDEHYRLSYVEGLRNTLSALEGAPLQHVFFVSSTGVYGQEVEE--WLDEDTP--PIAKDFSGKRMLE 139 (286)
T ss_dssp EEEECHHHH--HHC-----CCSHHHHHHHHHHTTTSCCCEEEEEEEGGGCCCCCSS--EECTTSC--CCCCSHHHHHHHH
T ss_pred EEEEeCCCC--CCCHHHHHHHHHHHHHHHHHHHhhCCCCEEEEEcccEEEcCCCCC--CCCCCCC--CCCCChhhHHHHH
Confidence 999999842 245677889999999999999999999999999999999754333 3344443 5788999999999
Q ss_pred HHHHHHHHhCCCCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCceeecccHHHHHHHHHHHHHHhccccc
Q 047227 166 GEALVIKANGTNGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICAERALASEVT 245 (485)
Q Consensus 166 ~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~D~a~a~~~~~~~~~~~~~ 245 (485)
+|++ +.+ ++++++||+++|||+... ++..+.+ +. ..++++..++|+|++|+|++++.+++....
T Consensus 140 ~E~~-~~~-----~~~~ilR~~~v~G~~~~~----~~~~~~~-~~--~~~~~~~~~~~i~v~Dva~~~~~~~~~~~~--- 203 (286)
T 3gpi_A 140 AEAL-LAA-----YSSTILRFSGIYGPGRLR----MIRQAQT-PE--QWPARNAWTNRIHRDDGAAFIAYLIQQRSH--- 203 (286)
T ss_dssp HHHH-GGG-----SSEEEEEECEEEBTTBCH----HHHHTTC-GG--GSCSSBCEECEEEHHHHHHHHHHHHHHHTT---
T ss_pred HHHH-Hhc-----CCeEEEecccccCCCchh----HHHHHHh-cc--cCCCcCceeEEEEHHHHHHHHHHHHhhhcc---
Confidence 9999 663 889999999999998763 3444444 22 347888999999999999999999884321
Q ss_pred hhhccCCcEEEeeCCCCccHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCCCCCCCCHHHHHhhccc
Q 047227 246 VAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELTYRLLGPYGMKVPQLTPSRVRLLSCS 325 (485)
Q Consensus 246 ~~~~~~g~~ynv~~~~~~t~~el~~~i~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 325 (485)
...+++||+++++++|+.|+++.+.+.+|.+.+....| .....
T Consensus 204 ---~~~~~~~~~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~----------------------------------~~~~~ 246 (286)
T 3gpi_A 204 ---AVPERLYIVTDNQPLPVHDLLRWLADRQGIAYPAGATP----------------------------------PVQGN 246 (286)
T ss_dssp ---SCCCSEEEECCSCCEEHHHHHHHHHHHTTCCCCCSCCC----------------------------------CBCSS
T ss_pred ---CCCCceEEEeCCCCCCHHHHHHHHHHHcCCCCCCCCCc----------------------------------ccCCC
Confidence 25688999999999999999999999999875543211 11235
Q ss_pred eeeehhhHHhhcCCCCCC-ChHHHHHHHHHHHHHhHh
Q 047227 326 RTFDCSKAKDLLGYMPIV-PLEEGIKRTVDSYSHLRA 361 (485)
Q Consensus 326 ~~~d~~ka~~~lG~~p~~-~l~e~i~~~~~~~~~~~~ 361 (485)
..+|++|++ .|||+|++ +++|+++++++|+.....
T Consensus 247 ~~~d~~k~~-~lG~~p~~~~l~e~l~~~~~~~~~~~~ 282 (286)
T 3gpi_A 247 KKLSNARLL-ASGYQLIYPDYVSGYGALLAAMREGHH 282 (286)
T ss_dssp CEECCHHHH-HTTCCCSSCSHHHHHHHHHHHHTC---
T ss_pred eEeeHHHHH-HcCCCCcCCcHHHHHHHHHHHHhcccc
Confidence 678999998 79999999 699999999999976443
|
| >1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold, sugar-nucleotide-binding domain; HET: NAD; 2.00A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A* 1kc3_A* 1kbz_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-40 Score=324.21 Aligned_cols=289 Identities=14% Similarity=0.127 Sum_probs=228.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcC--CC
Q 047227 8 RLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQG--AE 85 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~--~d 85 (485)
|+|||||||||||+++++.|+ +| ++|++++|... .+.+|+.|++++.+++++ +|
T Consensus 1 m~ilVtGatG~iG~~l~~~L~-~g-~~V~~~~r~~~----------------------~~~~D~~d~~~~~~~~~~~~~d 56 (299)
T 1n2s_A 1 MNILLFGKTGQVGWELQRSLA-PV-GNLIALDVHSK----------------------EFCGDFSNPKGVAETVRKLRPD 56 (299)
T ss_dssp CEEEEECTTSHHHHHHHHHTT-TT-SEEEEECTTCS----------------------SSCCCTTCHHHHHHHHHHHCCS
T ss_pred CeEEEECCCCHHHHHHHHHhh-cC-CeEEEeccccc----------------------cccccCCCHHHHHHHHHhcCCC
Confidence 589999999999999999999 89 69999987641 246899999999999986 99
Q ss_pred EEEEcCCCCC---CCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCccccccCCCCcCCCCCCCCCCCCCCchHHHH
Q 047227 86 VVFHMAAPNS---SINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDFYSAT 162 (485)
Q Consensus 86 ~Vih~aa~~~---~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy~~~~~~~~~~~e~~~~~~~~~~~Y~~s 162 (485)
+|||+|+... ...++...+++|+.++.+++++|++.++ ||||+||.++|+..... +.+|+. +..|.+.|+.+
T Consensus 57 ~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~-~~v~~SS~~vy~~~~~~--~~~E~~--~~~p~~~Y~~s 131 (299)
T 1n2s_A 57 VIVNAAAHTAVDKAESEPELAQLLNATSVEAIAKAANETGA-WVVHYSTDYVFPGTGDI--PWQETD--ATSPLNVYGKT 131 (299)
T ss_dssp EEEECCCCCCHHHHTTCHHHHHHHHTHHHHHHHHHHTTTTC-EEEEEEEGGGSCCCTTC--CBCTTS--CCCCSSHHHHH
T ss_pred EEEECcccCCHhhhhcCHHHHHHHHHHHHHHHHHHHHHcCC-cEEEEecccEEeCCCCC--CCCCCC--CCCCccHHHHH
Confidence 9999999543 3467788999999999999999999988 89999999999754332 334443 35778899999
Q ss_pred HHHHHHHHHHHhCCCCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCceeecccHHHHHHHHHHHHHHhcc
Q 047227 163 KAEGEALVIKANGTNGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICAERALAS 242 (485)
Q Consensus 163 K~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~D~a~a~~~~~~~~~~ 242 (485)
|..+|++++.++. +++++||+++|||+...+++.++..+..++++.+.|+ +.++|+|++|+|++++.+++....
T Consensus 132 K~~~E~~~~~~~~----~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~v~Dva~~~~~~~~~~~~ 205 (299)
T 1n2s_A 132 KLAGEKALQDNCP----KHLIFRTSWVYAGKGNNFAKTMLRLAKERQTLSVIND--QYGAPTGAELLADCTAHAIRVALN 205 (299)
T ss_dssp HHHHHHHHHHHCS----SEEEEEECSEECSSSCCHHHHHHHHHHHCSEEEEECS--CEECCEEHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC----CeEEEeeeeecCCCcCcHHHHHHHHHhcCCCEEeecC--cccCCeeHHHHHHHHHHHHHHhcc
Confidence 9999999999753 7999999999999877777888888888888777764 789999999999999999874210
Q ss_pred ccchhhcc-CCcEEEeeCCCCccHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCCCCCCCCHHHHHh
Q 047227 243 EVTVAEKA-AGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELTYRLLGPYGMKVPQLTPSRVRL 321 (485)
Q Consensus 243 ~~~~~~~~-~g~~ynv~~~~~~t~~el~~~i~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 321 (485)
.. .+++||+++++++|+.|+++.+.+.+|.+.+.+.+|... .. + ....+.. ..
T Consensus 206 ------~~~~~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~-------------~~-~-~~~~~~~-----~~ 259 (299)
T 1n2s_A 206 ------KPEVAGLYHLVAGGTTTWHDYAALVFDEARKAGITLALTELN-------------AV-P-TSAYPTP-----AS 259 (299)
T ss_dssp ------CGGGCEEEECCCBSCEEHHHHHHHHHHHHHHHTCCCCCCEEE-------------EE-C-STTSCCS-----SC
T ss_pred ------ccccCceEEEeCCCCCCHHHHHHHHHHHhCCCcccccccccc-------------cc-c-cccccCc-----CC
Confidence 12 478999999999999999999999998764322111100 00 0 0000000 00
Q ss_pred hccceeeehhhHHhhcCCCCCCChHHHHHHHHHHHHH
Q 047227 322 LSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSYSH 358 (485)
Q Consensus 322 ~~~~~~~d~~ka~~~lG~~p~~~l~e~i~~~~~~~~~ 358 (485)
......+|++|+++.|||+|+ +++|+++++++||++
T Consensus 260 ~~~~~~~d~~k~~~~lG~~p~-~~~~~l~~~~~~~~~ 295 (299)
T 1n2s_A 260 RPGNSRLNTEKFQRNFDLILP-QWELGVKRMLTEMFT 295 (299)
T ss_dssp CCSBCCBCCHHHHHHHTCCCC-BHHHHHHHHHHHHHS
T ss_pred CCCceeeeHHHHHHhcCCCCC-CHHHHHHHHHHHHHh
Confidence 123457899999999999998 999999999999975
|
| >2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-39 Score=325.47 Aligned_cols=325 Identities=19% Similarity=0.162 Sum_probs=242.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCC----ceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDM----FSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ 82 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~----~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~ 82 (485)
+|+|||||||||||+++++.|+++|. ++|++++|...... ....+++++.+|++|++++.++++
T Consensus 1 ~~~vlVtGatG~iG~~l~~~L~~~g~~~~~~~V~~~~r~~~~~~------------~~~~~~~~~~~Dl~d~~~~~~~~~ 68 (364)
T 2v6g_A 1 SSVALIVGVTGIIGNSLAEILPLADTPGGPWKVYGVARRTRPAW------------HEDNPINYVQCDISDPDDSQAKLS 68 (364)
T ss_dssp CEEEEEETTTSHHHHHHHHHTTSTTCTTCSEEEEEEESSCCCSC------------CCSSCCEEEECCTTSHHHHHHHHT
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCCCCCceEEEEEeCCCCccc------------cccCceEEEEeecCCHHHHHHHHh
Confidence 47999999999999999999999992 48999998754221 123578999999999999999999
Q ss_pred C---CCEEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhc--CCCEEE-------EecCccccccCCCCcCCCCCCCC
Q 047227 83 G---AEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAEL--KVKRLI-------YTSSPSVVFDGVHGIINGNEALP 150 (485)
Q Consensus 83 ~---~d~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~--~v~r~V-------~~SS~~vy~~~~~~~~~~~e~~~ 150 (485)
+ +|+|||+|+... .++...+++|+.++.+++++|++. ++++|| |+||.++|+.......+.+|+.+
T Consensus 69 ~~~~~d~vih~a~~~~--~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~~v~~~g~~i~~Ss~~vyg~~~~~~~~~~E~~~ 146 (364)
T 2v6g_A 69 PLTDVTHVFYVTWANR--STEQENCEANSKMFRNVLDAVIPNCPNLKHISLQTGRKHYMGPFESYGKIESHDPPYTEDLP 146 (364)
T ss_dssp TCTTCCEEEECCCCCC--SSHHHHHHHHHHHHHHHHHHHTTTCTTCCEEEEECCTHHHHCCGGGTTTSCCCCSSBCTTSC
T ss_pred cCCCCCEEEECCCCCc--chHHHHHHHhHHHHHHHHHHHHHhccccceEEeccCceEEEechhhccccccCCCCCCcccc
Confidence 8 999999999543 467889999999999999999998 799998 89999999754322334455544
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHhCCCC-ceEEEEecCCcccCCCCCC----hHH-HHHHH--HcCCCeEEecCCC---c
Q 047227 151 YPPKHNDFYSATKAEGEALVIKANGTNG-LLTCCIRPSSIFGPGDRLL----VPS-LVAAA--RAGKSKFIIGDGN---N 219 (485)
Q Consensus 151 ~~~~~~~~Y~~sK~~~E~~~~~~~~~~g-~~~~ilRp~~v~Gp~~~~~----~~~-~~~~~--~~g~~~~~~g~g~---~ 219 (485)
.. .+.+.| ..+|++++++++.++ ++++++||+++|||++... ++. +...+ ..|.++.++|+++ .
T Consensus 147 ~~-~~~~~y----~~~E~~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~ 221 (364)
T 2v6g_A 147 RL-KYMNFY----YDLEDIMLEEVEKKEGLTWSVHRPGNIFGFSPYSMMNLVGTLCVYAAICKHEGKVLRFTGCKAAWDG 221 (364)
T ss_dssp CC-SSCCHH----HHHHHHHHHHHTTSTTCEEEEEEESSEECCCTTCSSCHHHHHHHHHHHHHHHTCCBCCCSCHHHHHS
T ss_pred CC-ccchhh----HHHHHHHHHHhhcCCCceEEEECCCceeCCCCCcccchHHHHHHHHHHHHhcCCceecCCCcccccc
Confidence 21 135677 358999999887777 9999999999999987532 233 33434 4677777788874 4
Q ss_pred eeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCCCccHHHHHHHHHHHcCCCCCCc--cCCHHHHHHHHH--
Q 047227 220 VYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRI--KIPAFVMMPIAH-- 295 (485)
Q Consensus 220 ~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~~t~~el~~~i~~~~g~~~~~~--~~p~~~~~~~~~-- 295 (485)
..+++|++|+|++++.+++. +...|++||+++++++|+.|+++.+.+.+|.+.+.+ .+|.+++..++.
T Consensus 222 ~~~~~~v~Dva~a~~~~~~~--------~~~~g~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~p~~~~~~~~~~~ 293 (364)
T 2v6g_A 222 YSDCSDADLIAEHHIWAAVD--------PYAKNEAFNVSNGDVFKWKHFWKVLAEQFGVECGEYEEGVDLKLQDLMKGKE 293 (364)
T ss_dssp CBCCEEHHHHHHHHHHHHHC--------GGGTTEEEEECCSCCBCHHHHHHHHHHHHTCCBCCCCTTCCCCHHHHTTTCH
T ss_pred cCCCCcHHHHHHHHHHHHhC--------CCCCCceEEecCCCcCCHHHHHHHHHHHhCCCCCCCCCCCCccHHHHHhhhH
Confidence 47788889999999999873 224678999999999999999999999999887766 777766555544
Q ss_pred -HHHHHHHHhCCCCCCCCCC-CHH-HHHhhccc-eeeehhhHHhhcCCCCCCChHHHHHHHHHHHHHh
Q 047227 296 -MVELTYRLLGPYGMKVPQL-TPS-RVRLLSCS-RTFDCSKAKDLLGYMPIVPLEEGIKRTVDSYSHL 359 (485)
Q Consensus 296 -~~~~~~~~~~~~~~~~p~~-~~~-~~~~~~~~-~~~d~~ka~~~lG~~p~~~l~e~i~~~~~~~~~~ 359 (485)
..+.+.+..+......... ... ....+... ..+|++|+++ |||+|.++++|+++++++||++.
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~-lG~~p~~~~~e~l~~~~~~~~~~ 360 (364)
T 2v6g_A 294 PVWEEIVRENGLTPTKLKDVGIWWFGDVILGNECFLDSMNKSKE-HGFLGFRNSKNAFISWIDKAKAY 360 (364)
T ss_dssp HHHHHHHHHTTCCCCCHHHHCCHHHHHHHHTSCCCCBCCHHHHH-TTCCCCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCccccccccccchhhhccccchhhcchHHHHh-cCCCCCCCHHHHHHHHHHHHHHc
Confidence 2222222222100000000 000 00112245 5789999998 99999899999999999999864
|
| >1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-39 Score=326.20 Aligned_cols=325 Identities=16% Similarity=0.123 Sum_probs=240.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhh---cCCCeEEEEecCCCHHHHHHHhcC-
Q 047227 8 RLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEAL---RSGRAHYVSFDLRHKAQVLQALQG- 83 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~Dl~d~~~l~~~~~~- 83 (485)
|+||||||+||||+++++.|+++| ++|++++|........... . +.... ...+++++.+|++|++++.+++++
T Consensus 25 ~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~-~-l~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~ 101 (375)
T 1t2a_A 25 NVALITGITGQDGSYLAEFLLEKG-YEVHGIVRRSSSFNTGRIE-H-LYKNPQAHIEGNMKLHYGDLTDSTCLVKIINEV 101 (375)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCCSSCCCTTTG-G-GC---------CEEEEECCTTCHHHHHHHHHHH
T ss_pred cEEEEECCCchHHHHHHHHHHHCC-CEEEEEECCccccchhhHH-H-HhhhhccccCCCceEEEccCCCHHHHHHHHHhc
Confidence 689999999999999999999999 6999999875421100000 0 00000 235789999999999999999985
Q ss_pred -CCEEEEcCCCCCC---CCchhhhHHHHHHHHHHHHHHHHhcCC---CEEEEecCccccccCCCCcCCCCCCCCCCCCCC
Q 047227 84 -AEVVFHMAAPNSS---INNHKLHHSVNVEGTKNVIDACAELKV---KRLIYTSSPSVVFDGVHGIINGNEALPYPPKHN 156 (485)
Q Consensus 84 -~d~Vih~aa~~~~---~~~~~~~~~~nv~~t~~ll~a~~~~~v---~r~V~~SS~~vy~~~~~~~~~~~e~~~~~~~~~ 156 (485)
+|+|||+|+.... ..++...+++|+.++.+++++|++.++ ++|||+||.++|+.... .+.+|+.+ ..|.
T Consensus 102 ~~d~vih~A~~~~~~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~~~~iv~~SS~~~~~~~~~--~~~~E~~~--~~~~ 177 (375)
T 1t2a_A 102 KPTEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCGLINSVKFYQASTSELYGKVQE--IPQKETTP--FYPR 177 (375)
T ss_dssp CCSEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGTCSCSS--SSBCTTSC--CCCC
T ss_pred CCCEEEECCCcccccccccCHHHHHHHHHHHHHHHHHHHHHhCCCccceEEEecchhhhCCCCC--CCCCccCC--CCCC
Confidence 7999999995432 346778899999999999999999987 89999999999975432 23345443 4678
Q ss_pred chHHHHHHHHHHHHHHHhCCCCceEEEEecCCcccCCCC-CC----hHHHHHHHHcCC-CeEEecCCCceeecccHHHHH
Q 047227 157 DFYSATKAEGEALVIKANGTNGLLTCCIRPSSIFGPGDR-LL----VPSLVAAARAGK-SKFIIGDGNNVYDFTYVANVA 230 (485)
Q Consensus 157 ~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~-~~----~~~~~~~~~~g~-~~~~~g~g~~~~~~i~v~D~a 230 (485)
+.|+.+|..+|.+++.++.+++++++++||+++|||+.. .+ +..++..+..|+ ....+|++++.++|+|++|+|
T Consensus 178 ~~Y~~sK~~~e~~~~~~~~~~~~~~~i~r~~~~~gp~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~i~v~Dva 257 (375)
T 1t2a_A 178 SPYGAAKLYAYWIVVNFREAYNLFAVNGILFNHESPRRGANFVTRKISRSVAKIYLGQLECFSLGNLDAKRDWGHAKDYV 257 (375)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCTTSHHHHHHHHHHHHHHTSCSCEEESCTTCEECCEEHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHhCCCEEEEecccccCCCCCCCcchHHHHHHHHHHHcCCCceeEeCCCCceeeeEEHHHHH
Confidence 899999999999999988778999999999999999754 23 244555556665 445678999999999999999
Q ss_pred HHHHHHHHHhccccchhhccCCcEEEeeCCCCccHHHHHHHHHHHcCCCCCCc--cCCHHHHHHHHHHHHHHHHHhCCCC
Q 047227 231 HAHICAERALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRI--KIPAFVMMPIAHMVELTYRLLGPYG 308 (485)
Q Consensus 231 ~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~~t~~el~~~i~~~~g~~~~~~--~~p~~~~~~~~~~~~~~~~~~~~~~ 308 (485)
++++.+++. ..+++||+++++++|+.|+++.+.+.+|.+.+.. .+|.+++. ..+ +
T Consensus 258 ~a~~~~~~~----------~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~p~~~~~----------~~~---~ 314 (375)
T 1t2a_A 258 EAMWLMLQN----------DEPEDFVIATGEVHSVREFVEKSFLHIGKTIVWEGKNENEVGRC----------KET---G 314 (375)
T ss_dssp HHHHHHHHS----------SSCCCEEECCSCCEEHHHHHHHHHHHTTCCEEEESCGGGCEEEE----------TTT---C
T ss_pred HHHHHHHhc----------CCCceEEEeCCCcccHHHHHHHHHHHhCCCcccccccccccccc----------ccc---c
Confidence 999998763 1247899999999999999999999999864321 12221100 000 0
Q ss_pred CCCCCCCHHHH-HhhccceeeehhhHHhhcCCCCCCChHHHHHHHHHHHHHhHhc
Q 047227 309 MKVPQLTPSRV-RLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSYSHLRAE 362 (485)
Q Consensus 309 ~~~p~~~~~~~-~~~~~~~~~d~~ka~~~lG~~p~~~l~e~i~~~~~~~~~~~~~ 362 (485)
.....+.+... ........+|++|++++|||+|.++++|+++++++||.+....
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~l~e~l~~~~~~~~~~~~~ 369 (375)
T 1t2a_A 315 KVHVTVDLKYYRPTEVDFLQGDCTKAKQKLNWKPRVAFDELVREMVHADVELMRT 369 (375)
T ss_dssp CEEEEECGGGSCSSCCCBCCBCCHHHHHHHCCCCCSCHHHHHHHHHHHHHHHHHH
T ss_pred cceeecCcccCCcccchhhcCCHHHHHHhcCCCccCCHHHHHHHHHHHHHHhhcc
Confidence 00000000000 0011234579999999999999999999999999999987764
|
| >1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A {Escherichia coli} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-40 Score=329.02 Aligned_cols=334 Identities=15% Similarity=0.160 Sum_probs=237.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCcccc-CCccchhhhhhhh--cCCCeEEEEecCCCHHHHHHHhcC
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIAL-EPHEEQGILGEAL--RSGRAHYVSFDLRHKAQVLQALQG 83 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~-~~~~~~~~~~~~~--~~~~v~~~~~Dl~d~~~l~~~~~~ 83 (485)
||+||||||+||||+++++.|+++| ++|++++|...... ..... +.... ...+++++.+|++|++++.+++++
T Consensus 1 m~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~ 76 (372)
T 1db3_A 1 SKVALITGVTGQDGSYLAEFLLEKG-YEVHGIKRRASSFNTERVDH---IYQDPHTCNPKFHLHYGDLSDTSNLTRILRE 76 (372)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEECC------------------------CCEEECCCCSSCHHHHHHHHHH
T ss_pred CCEEEEECCCChHHHHHHHHHHHCC-CEEEEEECCCcccchHHHHH---HhhccccCCCceEEEECCCCCHHHHHHHHHh
Confidence 4799999999999999999999999 69999988754210 00000 00000 135788999999999999999985
Q ss_pred --CCEEEEcCCCCC---CCCchhhhHHHHHHHHHHHHHHHHhcCC---CEEEEecCccccccCCCCcCCCCCCCCCCCCC
Q 047227 84 --AEVVFHMAAPNS---SINNHKLHHSVNVEGTKNVIDACAELKV---KRLIYTSSPSVVFDGVHGIINGNEALPYPPKH 155 (485)
Q Consensus 84 --~d~Vih~aa~~~---~~~~~~~~~~~nv~~t~~ll~a~~~~~v---~r~V~~SS~~vy~~~~~~~~~~~e~~~~~~~~ 155 (485)
+|+|||+|+... ...++...+++|+.++.+++++|++.++ ++|||+||.++|+.... .+.+|+.+ ..|
T Consensus 77 ~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~iv~~SS~~v~g~~~~--~~~~E~~~--~~~ 152 (372)
T 1db3_A 77 VQPDEVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLEKKTRFYQASTSELYGLVQE--IPQKETTP--FYP 152 (372)
T ss_dssp HCCSEEEECCCCCTTTTTTSCHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGGTTCCS--SSBCTTSC--CCC
T ss_pred cCCCEEEECCcccCccccccCHHHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCChhhhCCCCC--CCCCccCC--CCC
Confidence 799999999432 3456778899999999999999999988 89999999999975432 23344443 467
Q ss_pred CchHHHHHHHHHHHHHHHhCCCCceEEEEecCCcccCCCCC-C----hHHHHHHHHcCCC-eEEecCCCceeecccHHHH
Q 047227 156 NDFYSATKAEGEALVIKANGTNGLLTCCIRPSSIFGPGDRL-L----VPSLVAAARAGKS-KFIIGDGNNVYDFTYVANV 229 (485)
Q Consensus 156 ~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~~-~----~~~~~~~~~~g~~-~~~~g~g~~~~~~i~v~D~ 229 (485)
.+.|+.+|..+|.+++.++.+++++++++|++++|||+... + +..++..+..|+. ...+|++++.++|+|++|+
T Consensus 153 ~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~r~~~~~gp~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~i~v~Dv 232 (372)
T 1db3_A 153 RSPYAVAKLYAYWITVNYRESYGMYACNGILFNHESPRRGETFVTRKITRAIANIAQGLESCLYLGNMDSLRDWGHAKDY 232 (372)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTSCTTSHHHHHHHHHHHHHTTSCCCEEESCTTCEECCEEHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHhCCCeEEEEECCccCCCCCCcchhhHHHHHHHHHHcCCCCceeecCCCceeeeeEHHHH
Confidence 88999999999999999887789999999999999997542 2 3455666667763 4567899999999999999
Q ss_pred HHHHHHHHHHhccccchhhccCCcEEEeeCCCCccHHHHHHHHHHHcCCCCCCcc--CCHH-HHHHHHHHHHHHHHHhCC
Q 047227 230 AHAHICAERALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIK--IPAF-VMMPIAHMVELTYRLLGP 306 (485)
Q Consensus 230 a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~~t~~el~~~i~~~~g~~~~~~~--~p~~-~~~~~~~~~~~~~~~~~~ 306 (485)
|++++.+++. ..+++||+++++++|+.|+++.+.+.+|.+.+... +|.+ ++..+. ..+... ..
T Consensus 233 a~a~~~~~~~----------~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~p~~~~~~~~~-~~~~~~---~~ 298 (372)
T 1db3_A 233 VKMQWMMLQQ----------EQPEDFVIATGVQYSVRQFVEMAAAQLGIKLRFEGTGVEEKGIVVSVT-GHDAPG---VK 298 (372)
T ss_dssp HHHHHHTTSS----------SSCCCEEECCCCCEEHHHHHHHHHHTTTEEEEEESCGGGCEEEEEEEC-SSSCTT---CC
T ss_pred HHHHHHHHhc----------CCCceEEEcCCCceeHHHHHHHHHHHhCCCcccccccccccccccccc-cccccc---cc
Confidence 9999987642 22478999999999999999999999997543211 1110 000000 000000 00
Q ss_pred CCCCCCCCCHHHH-HhhccceeeehhhHHhhcCCCCCCChHHHHHHHHHHHHHhHhc
Q 047227 307 YGMKVPQLTPSRV-RLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSYSHLRAE 362 (485)
Q Consensus 307 ~~~~~p~~~~~~~-~~~~~~~~~d~~ka~~~lG~~p~~~l~e~i~~~~~~~~~~~~~ 362 (485)
.+.....+.+... ........+|++|++++|||+|.++++|+++++++||.+....
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~l~e~l~~~~~~~~~~~~~ 355 (372)
T 1db3_A 299 PGDVIIAVDPRYFRPAEVETLLGDPTKAHEKLGWKPEITLREMVSEMVANDLEAAKK 355 (372)
T ss_dssp TTCEEEEECGGGCCCCC-CCCCBCCHHHHHHHCCCCCSCHHHHHHHHHHHHHHHHHT
T ss_pred cccceeeccccccCCCchhhhccCHHHHHHHhCCccccCHHHHHHHHHHHHHHhhhc
Confidence 0000000001000 0011234579999999999999999999999999999887654
|
| >2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-39 Score=323.34 Aligned_cols=324 Identities=16% Similarity=0.177 Sum_probs=241.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcC--
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQG-- 83 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~-- 83 (485)
++|+||||||+||||+++++.|+++| ++|++++|....... . .+.......+++++.+|++|++++.+++++
T Consensus 2 ~~~~vlVtGatG~iG~~l~~~L~~~G-~~V~~~~r~~~~~~~--~---~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~ 75 (345)
T 2z1m_A 2 SGKRALITGIRGQDGAYLAKLLLEKG-YEVYGADRRSGEFAS--W---RLKELGIENDVKIIHMDLLEFSNIIRTIEKVQ 75 (345)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEECSCCSTTTT--H---HHHHTTCTTTEEECCCCTTCHHHHHHHHHHHC
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCC-CEEEEEECCCccccc--c---cHhhccccCceeEEECCCCCHHHHHHHHHhcC
Confidence 35899999999999999999999999 699999987542110 0 111111234789999999999999999985
Q ss_pred CCEEEEcCCCCC---CCCchhhhHHHHHHHHHHHHHHHHhcCC-CEEEEecCccccccCCCCcCCCCCCCCCCCCCCchH
Q 047227 84 AEVVFHMAAPNS---SINNHKLHHSVNVEGTKNVIDACAELKV-KRLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDFY 159 (485)
Q Consensus 84 ~d~Vih~aa~~~---~~~~~~~~~~~nv~~t~~ll~a~~~~~v-~r~V~~SS~~vy~~~~~~~~~~~e~~~~~~~~~~~Y 159 (485)
+|+|||+|+... +..++...+++|+.++.+++++|++.++ ++|||+||.++|+..... +.+|..+ ..|.+.|
T Consensus 76 ~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~SS~~vyg~~~~~--~~~e~~~--~~~~~~Y 151 (345)
T 2z1m_A 76 PDEVYNLAAQSFVGVSFEQPILTAEVDAIGVLRILEALRTVKPDTKFYQASTSEMFGKVQEI--PQTEKTP--FYPRSPY 151 (345)
T ss_dssp CSEEEECCCCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTCEEEEEEEGGGGCSCSSS--SBCTTSC--CCCCSHH
T ss_pred CCEEEECCCCcchhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEechhhcCCCCCC--CCCccCC--CCCCChh
Confidence 699999999543 2456788999999999999999999987 899999999999754332 3344433 4678899
Q ss_pred HHHHHHHHHHHHHHhCCCCceEEEEecCCcccCCCCC-C----hHHHHHHHHcCCC-eEEecCCCceeecccHHHHHHHH
Q 047227 160 SATKAEGEALVIKANGTNGLLTCCIRPSSIFGPGDRL-L----VPSLVAAARAGKS-KFIIGDGNNVYDFTYVANVAHAH 233 (485)
Q Consensus 160 ~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~~-~----~~~~~~~~~~g~~-~~~~g~g~~~~~~i~v~D~a~a~ 233 (485)
+.+|..+|.+++.++.+++++++++|++++|||+... . +..++..+..++. ....+++++.++|+|++|+|+++
T Consensus 152 ~~sK~~~e~~~~~~~~~~~~~~~~~r~~~~~gpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~Dva~a~ 231 (345)
T 2z1m_A 152 AVAKLFGHWITVNYREAYNMFACSGILFNHESPLRGIEFVTRKITYSLARIKYGLQDKLVLGNLNAKRDWGYAPEYVEAM 231 (345)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTSCTTSHHHHHHHHHHHHHTTSCSCEEESCTTCEECCEEHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCceEeeeeeeecCCCCCCcchhHHHHHHHHHHHcCCCCeeeeCCCCceeeeEEHHHHHHHH
Confidence 9999999999999887778999999999999998542 2 2334445556653 34678888999999999999999
Q ss_pred HHHHHHhccccchhhccCCcEEEeeCCCCccHHHHHHHHHHHcCCCCCCc--cCCHHHHHHHHHHHHHHHHHhCCCCCCC
Q 047227 234 ICAERALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRI--KIPAFVMMPIAHMVELTYRLLGPYGMKV 311 (485)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~g~~ynv~~~~~~t~~el~~~i~~~~g~~~~~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (485)
+.+++. ..+++||+++++++++.|+++.+.+.+|.+.+.. .+|.+++. ... +...
T Consensus 232 ~~~~~~----------~~~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~p~~~~~----------~~~---~~~~ 288 (345)
T 2z1m_A 232 WLMMQQ----------PEPDDYVIATGETHTVREFVEKAAKIAGFDIEWVGEGINEKGID----------RNT---GKVI 288 (345)
T ss_dssp HHHHTS----------SSCCCEEECCSCCEEHHHHHHHHHHHTTCCEEEESCGGGCEEEE----------TTT---CCEE
T ss_pred HHHHhC----------CCCceEEEeCCCCccHHHHHHHHHHHhCCCcccccccccccccc----------ccc---cccc
Confidence 988752 2247899999999999999999999999874422 12221100 000 0000
Q ss_pred CCCCHHHH-HhhccceeeehhhHHhhcCCCCCCChHHHHHHHHHHHHHhHhc
Q 047227 312 PQLTPSRV-RLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSYSHLRAE 362 (485)
Q Consensus 312 p~~~~~~~-~~~~~~~~~d~~ka~~~lG~~p~~~l~e~i~~~~~~~~~~~~~ 362 (485)
....+... ........+|++|++++|||+|.++++|+++++++||.+....
T Consensus 289 ~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~~~~~l~~~~~~~~~~~~~ 340 (345)
T 2z1m_A 289 VEVSEEFFRPAEVDILVGNPEKAMKKLGWKPRTTFDELVEIMMEADLKRVRD 340 (345)
T ss_dssp EEECGGGSCSSCCCBCCBCCHHHHHHHCCCCCSCHHHHHHHHHHHHHHHHHC
T ss_pred cccCcccCCCCCcceeecCHHHHHHHcCCcccCCHHHHHHHHHHHHHHHhcc
Confidence 00000000 0011234579999999999999999999999999999887654
|
| >2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-39 Score=320.58 Aligned_cols=289 Identities=17% Similarity=0.207 Sum_probs=229.8
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc--
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ-- 82 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 82 (485)
.++|+||||||+||||+++++.|+++| ++|++++|........ ... ..+++++.+|++|.+++.++++
T Consensus 18 ~~~~~vlVTGasG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~------~~~---l~~v~~~~~Dl~d~~~~~~~~~~~ 87 (330)
T 2pzm_A 18 GSHMRILITGGAGCLGSNLIEHWLPQG-HEILVIDNFATGKREV------LPP---VAGLSVIEGSVTDAGLLERAFDSF 87 (330)
T ss_dssp TTCCEEEEETTTSHHHHHHHHHHGGGT-CEEEEEECCSSSCGGG------SCS---CTTEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCCccchhh------hhc---cCCceEEEeeCCCHHHHHHHHhhc
Confidence 457899999999999999999999999 6999999864321100 000 1578999999999999999998
Q ss_pred CCCEEEEcCCCCCC--CCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCccccccCCCCcCCCCCCCCCCCCCCchHH
Q 047227 83 GAEVVFHMAAPNSS--INNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDFYS 160 (485)
Q Consensus 83 ~~d~Vih~aa~~~~--~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy~~~~~~~~~~~e~~~~~~~~~~~Y~ 160 (485)
++|+|||+|+.... ..++. +++|+.++.+++++|++.+++||||+||.++|+.......+.+|+. .+.+.|+
T Consensus 88 ~~D~vih~A~~~~~~~~~~~~--~~~N~~~~~~l~~a~~~~~~~~iV~~SS~~~~~~~~~~~~~~~E~~----~~~~~Y~ 161 (330)
T 2pzm_A 88 KPTHVVHSAAAYKDPDDWAED--AATNVQGSINVAKAASKAGVKRLLNFQTALCYGRPATVPIPIDSPT----APFTSYG 161 (330)
T ss_dssp CCSEEEECCCCCSCTTCHHHH--HHHHTHHHHHHHHHHHHHTCSEEEEEEEGGGGCSCSSSSBCTTCCC----CCCSHHH
T ss_pred CCCEEEECCccCCCccccChh--HHHHHHHHHHHHHHHHHcCCCEEEEecCHHHhCCCccCCCCcCCCC----CCCChHH
Confidence 99999999994432 23444 8999999999999999999999999999999964322111334432 4678999
Q ss_pred HHHHHHHHHHHHHhCCCCceEEEEecCCcccCCCC-CChHHHHHHHHcCCCeEEecCCCceeecccHHHHHH-HHHHHHH
Q 047227 161 ATKAEGEALVIKANGTNGLLTCCIRPSSIFGPGDR-LLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAH-AHICAER 238 (485)
Q Consensus 161 ~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~-~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~D~a~-a~~~~~~ 238 (485)
.+|..+|.+++.+ +++++++||+++|||+.. .+++.++..+..+. .++++++ .++|+|++|+|+ +++.+++
T Consensus 162 ~sK~~~e~~~~~~----~~~~~~iR~~~v~gp~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~i~~~Dva~~a~~~~~~ 234 (330)
T 2pzm_A 162 ISKTAGEAFLMMS----DVPVVSLRLANVTGPRLAIGPIPTFYKRLKAGQ--KCFCSDT-VRDFLDMSDFLAIADLSLQE 234 (330)
T ss_dssp HHHHHHHHHHHTC----SSCEEEEEECEEECTTCCSSHHHHHHHHHHTTC--CCCEESC-EECEEEHHHHHHHHHHHTST
T ss_pred HHHHHHHHHHHHc----CCCEEEEeeeeeECcCCCCCHHHHHHHHHHcCC--EEeCCCC-EecceeHHHHHHHHHHHHhh
Confidence 9999999999885 789999999999999863 45667777777776 4566777 899999999999 9988765
Q ss_pred HhccccchhhccCCcEEEeeCCCCccHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCCCCCCCCHHH
Q 047227 239 ALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELTYRLLGPYGMKVPQLTPSR 318 (485)
Q Consensus 239 ~~~~~~~~~~~~~g~~ynv~~~~~~t~~el~~~i~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 318 (485)
. + . +++||+++++++++.|+++.+.+.+|.+ +....|.+ .
T Consensus 235 ~--------~-~-g~~~~v~~~~~~s~~e~~~~i~~~~g~~-~~~~~~~~---------------------~-------- 274 (330)
T 2pzm_A 235 G--------R-P-TGVFNVSTGEGHSIKEVFDVVLDYVGAT-LAEPVPVV---------------------A-------- 274 (330)
T ss_dssp T--------C-C-CEEEEESCSCCEEHHHHHHHHHHHHTCC-CSSCCCEE---------------------C--------
T ss_pred c--------C-C-CCEEEeCCCCCCCHHHHHHHHHHHhCCC-CceeCCCC---------------------c--------
Confidence 2 1 2 8899999999999999999999999987 43333321 0
Q ss_pred HHhhccceeeehhhH-----HhhcCCCCCCChHHHHHHHHHHHHHhH
Q 047227 319 VRLLSCSRTFDCSKA-----KDLLGYMPIVPLEEGIKRTVDSYSHLR 360 (485)
Q Consensus 319 ~~~~~~~~~~d~~ka-----~~~lG~~p~~~l~e~i~~~~~~~~~~~ 360 (485)
......+|++|+ ++ |||+|.++++|+++++++||++.+
T Consensus 275 ---~~~~~~~d~~k~~~~~l~~-lG~~p~~~~~~~l~~~~~~~~~~~ 317 (330)
T 2pzm_A 275 ---PGADDVPSVVLDPSKTETE-FGWKAKVDFKDTITGQLAWYDKYG 317 (330)
T ss_dssp ---CCTTSCSEECBCCHHHHHH-HCCCCCCCHHHHHHHHHHHHHHHC
T ss_pred ---chhhccCCHHHHhhchHHH-cCCcccCCHHHHHHHHHHHHHhhC
Confidence 012356788888 77 999998999999999999998754
|
| >3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3- hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A {Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-39 Score=317.56 Aligned_cols=299 Identities=18% Similarity=0.178 Sum_probs=229.3
Q ss_pred EEEEEcCCCchHHHHHHHHHhc--CCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc--CC
Q 047227 9 LCVVTGGRGFAARHLVEMLIRY--DMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ--GA 84 (485)
Q Consensus 9 ~iLVtGgtG~iG~~l~~~Ll~~--G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--~~ 84 (485)
+||||||+||||+++++.|+++ | ++|++++|..... .+++++.+|++|++++.++++ ++
T Consensus 1 ~vlVtGatG~iG~~l~~~L~~~~~g-~~V~~~~r~~~~~----------------~~~~~~~~D~~d~~~~~~~~~~~~~ 63 (317)
T 3ajr_A 1 MILVTGSSGQIGTELVPYLAEKYGK-KNVIASDIVQRDT----------------GGIKFITLDVSNRDEIDRAVEKYSI 63 (317)
T ss_dssp CEEEESTTSTTHHHHHHHHHHHHCG-GGEEEEESSCCCC----------------TTCCEEECCTTCHHHHHHHHHHTTC
T ss_pred CEEEEcCCcHHHHHHHHHHHHhcCC-CEEEEecCCCccc----------------cCceEEEecCCCHHHHHHHHhhcCC
Confidence 5899999999999999999998 7 6899998764311 146789999999999999998 89
Q ss_pred CEEEEcCCCCC--CCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCccccccCCCCcCCCCCCCCCCCCCCchHHHH
Q 047227 85 EVVFHMAAPNS--SINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDFYSAT 162 (485)
Q Consensus 85 d~Vih~aa~~~--~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy~~~~~~~~~~~e~~~~~~~~~~~Y~~s 162 (485)
|+|||+|+... ...++...+++|+.++.+++++|++.+++||||+||.++|+..... .+.+|+. +..|.+.|+.+
T Consensus 64 d~vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~SS~~~~~~~~~~-~~~~e~~--~~~p~~~Y~~s 140 (317)
T 3ajr_A 64 DAIFHLAGILSAKGEKDPALAYKVNMNGTYNILEAAKQHRVEKVVIPSTIGVFGPETPK-NKVPSIT--ITRPRTMFGVT 140 (317)
T ss_dssp CEEEECCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCTTSCS-SSBCSSS--CCCCCSHHHHH
T ss_pred cEEEECCcccCCccccChHHHhhhhhHHHHHHHHHHHHcCCCEEEEecCHHHhCCCCCC-CCccccc--cCCCCchHHHH
Confidence 99999999532 2346778899999999999999999999999999999999753221 2233333 35688999999
Q ss_pred HHHHHHHHHHHhCCCCceEEEEecCCcccCCCC------CChHHHHHHHHcCCCeEEecCCCceeecccHHHHHHHHHHH
Q 047227 163 KAEGEALVIKANGTNGLLTCCIRPSSIFGPGDR------LLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICA 236 (485)
Q Consensus 163 K~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~------~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~D~a~a~~~~ 236 (485)
|..+|.+++.++++++++++++||+++||++.. ..+...+.....++....++++++.++|+|++|+|++++.+
T Consensus 141 K~~~e~~~~~~~~~~~~~~~~lR~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~ 220 (317)
T 3ajr_A 141 KIAAELLGQYYYEKFGLDVRSLRYPGIISYKAEPTAGTTDYAVEIFYYAVKREKYKCYLAPNRALPMMYMPDALKALVDL 220 (317)
T ss_dssp HHHHHHHHHHHHHHHCCEEEEEEECEEECSSSCCCSCSSTHHHHHHHHHHTTCCEEECSCTTCCEEEEEHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCeEEEEecCcEeccCCCCCCcchhHHHHHHHHHHhCCCceeecCccceeeeeEHHHHHHHHHHH
Confidence 999999999887778999999999999997531 11222333344555667778888999999999999999998
Q ss_pred HHHhccccchhhccCCcEEEeeCCCCccHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCCCCCCCCH
Q 047227 237 ERALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELTYRLLGPYGMKVPQLTP 316 (485)
Q Consensus 237 ~~~~~~~~~~~~~~~g~~ynv~~~~~~t~~el~~~i~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 316 (485)
++..... ...+++||+++ +.+++.|+++.+.+.+|.. +....|.. .
T Consensus 221 l~~~~~~-----~~~g~~~~i~~-~~~s~~e~~~~i~~~~~~~-~i~~~~~~---------------------------~ 266 (317)
T 3ajr_A 221 YEADRDK-----LVLRNGYNVTA-YTFTPSELYSKIKERIPEF-EIEYKEDF---------------------------R 266 (317)
T ss_dssp HHCCGGG-----CSSCSCEECCS-EEECHHHHHHHHHTTCCSC-CEEECCCH---------------------------H
T ss_pred HhCCccc-----cccCceEecCC-ccccHHHHHHHHHHHCCcc-cccccccc---------------------------c
Confidence 7732110 01358999986 6799999999999988731 11111110 0
Q ss_pred HHHHhhccceeeehhhHHhhcCCCCCCChHHHHHHHHHHHHHhHhc
Q 047227 317 SRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSYSHLRAE 362 (485)
Q Consensus 317 ~~~~~~~~~~~~d~~ka~~~lG~~p~~~l~e~i~~~~~~~~~~~~~ 362 (485)
.. ........+|++|+++.|||+|.++++|+++++++||++....
T Consensus 267 ~~-~~~~~~~~~d~~k~~~~lG~~p~~~~~~~l~~~~~~~~~~~~~ 311 (317)
T 3ajr_A 267 DK-IAATWPESLDSSEASNEWGFSIEYDLDRTIDDMIDHISEKLGI 311 (317)
T ss_dssp HH-HHTTSCSCBCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHTTS
T ss_pred hh-hccccccccCHHHHHHHcCCCCCCCHHHHHHHHHHHHHhhhcc
Confidence 00 0011234679999999999999999999999999999875543
|
| >2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-39 Score=319.16 Aligned_cols=290 Identities=18% Similarity=0.164 Sum_probs=229.2
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcC-
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQG- 83 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~- 83 (485)
.++|+||||||+||||+++++.|+++| ++|++++|....... . +. ..++++++.+|++|++++.+++++
T Consensus 19 ~~~~~vlVTGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~---~---l~---~~~~~~~~~~Dl~d~~~~~~~~~~~ 88 (333)
T 2q1w_A 19 SHMKKVFITGICGQIGSHIAELLLERG-DKVVGIDNFATGRRE---H---LK---DHPNLTFVEGSIADHALVNQLIGDL 88 (333)
T ss_dssp --CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCSSCCGG---G---SC---CCTTEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHCC-CEEEEEECCCccchh---h---Hh---hcCCceEEEEeCCCHHHHHHHHhcc
Confidence 357899999999999999999999999 699999986432110 0 00 015789999999999999999988
Q ss_pred -CCEEEEcCCCCCC--CCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCccccc----cCCCCcCCCCCCCCCCCCCC
Q 047227 84 -AEVVFHMAAPNSS--INNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVVF----DGVHGIINGNEALPYPPKHN 156 (485)
Q Consensus 84 -~d~Vih~aa~~~~--~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy~----~~~~~~~~~~e~~~~~~~~~ 156 (485)
+|+|||+|+.... ..++. +++|+.++.+++++|++.++++|||+||.++|+ +... +.+|+. .|.
T Consensus 89 ~~D~vih~A~~~~~~~~~~~~--~~~N~~~~~~l~~a~~~~~~~~iV~~SS~~~~g~~~~~~~~---~~~E~~----~p~ 159 (333)
T 2q1w_A 89 QPDAVVHTAASYKDPDDWYND--TLTNCVGGSNVVQAAKKNNVGRFVYFQTALCYGVKPIQQPV---RLDHPR----NPA 159 (333)
T ss_dssp CCSEEEECCCCCSCTTCHHHH--HHHHTHHHHHHHHHHHHTTCSEEEEEEEGGGGCSCCCSSSB---CTTSCC----CCT
T ss_pred CCcEEEECceecCCCccCChH--HHHHHHHHHHHHHHHHHhCCCEEEEECcHHHhCCCcccCCC---CcCCCC----CCC
Confidence 9999999994432 23343 899999999999999999999999999999996 3322 344432 456
Q ss_pred -chHHHHHHHHHHHHHH-HhCCCCceEEEEecCCcccCCCC-CChHHHHHHHHcCCCeEEecCCCceeecccHHHHHHHH
Q 047227 157 -DFYSATKAEGEALVIK-ANGTNGLLTCCIRPSSIFGPGDR-LLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAH 233 (485)
Q Consensus 157 -~~Y~~sK~~~E~~~~~-~~~~~g~~~~ilRp~~v~Gp~~~-~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~D~a~a~ 233 (485)
+.|+.+|..+|.+++. ++ +++++||+++|||+.. .+++.++..+..+. .+++ +++.++|+|++|+|+++
T Consensus 160 ~~~Y~~sK~~~E~~~~~s~~-----~~~ilR~~~v~gp~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~i~v~Dva~ai 231 (333)
T 2q1w_A 160 NSSYAISKSANEDYLEYSGL-----DFVTFRLANVVGPRNVSGPLPIFFQRLSEGK--KCFV-TKARRDFVFVKDLARAT 231 (333)
T ss_dssp TCHHHHHHHHHHHHHHHHTC-----CEEEEEESEEESTTCCSSHHHHHHHHHHTTC--CCEE-EECEECEEEHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHhhhC-----CeEEEeeceEECcCCcCcHHHHHHHHHHcCC--eeeC-CCceEeeEEHHHHHHHH
Confidence 8999999999999998 65 6899999999999843 46677777777776 4556 67889999999999999
Q ss_pred HHHHHHhccccchhhccCCcEEEeeCCCCccHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCCCCCC
Q 047227 234 ICAERALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELTYRLLGPYGMKVPQ 313 (485)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~g~~ynv~~~~~~t~~el~~~i~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~ 313 (485)
+.+++. + . +++||+++++++++.|+++.+.+.+|.+ +...+|... ..
T Consensus 232 ~~~~~~--------~-~-g~~~~v~~~~~~s~~e~~~~i~~~~g~~-~~~~~~~~~--------------------~~-- 278 (333)
T 2q1w_A 232 VRAVDG--------V-G-HGAYHFSSGTDVAIKELYDAVVEAMALP-SYPEPEIRE--------------------LG-- 278 (333)
T ss_dssp HHHHTT--------C-C-CEEEECSCSCCEEHHHHHHHHHHHTTCS-SCCCCEEEE--------------------CC--
T ss_pred HHHHhc--------C-C-CCEEEeCCCCCccHHHHHHHHHHHhCCC-CceeCCCCC--------------------cc--
Confidence 988752 2 2 7899999999999999999999999987 433333210 00
Q ss_pred CCHHHHHhhccceeeehhhHHhhcCCCCCCChHHHHHHHHHHHHHhH
Q 047227 314 LTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSYSHLR 360 (485)
Q Consensus 314 ~~~~~~~~~~~~~~~d~~ka~~~lG~~p~~~l~e~i~~~~~~~~~~~ 360 (485)
...+.....+|++|+++. ||+|.++++|+++++++||++.+
T Consensus 279 -----~~~~~~~~~~d~~k~~~~-G~~p~~~~~~~l~~~~~~~~~~~ 319 (333)
T 2q1w_A 279 -----PDDAPSILLDPSRTIQDF-GKIEFTPLKETVAAAVAYFREYG 319 (333)
T ss_dssp -----TTSCCCCCBCCHHHHHHH-CCCCCCCHHHHHHHHHHHHHHHC
T ss_pred -----cccccccccCCHHHHHhc-CCCcCCCHHHHHHHHHHHHHHHC
Confidence 011123567899999998 99999999999999999998754
|
| >1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-39 Score=313.23 Aligned_cols=276 Identities=16% Similarity=0.160 Sum_probs=226.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc--C
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ--G 83 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--~ 83 (485)
..|+|||||||||||+++++.|+++| ++|++++|. .+|++|++++.++++ +
T Consensus 11 ~~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~--------------------------~~Dl~d~~~~~~~~~~~~ 63 (292)
T 1vl0_A 11 HHMKILITGANGQLGREIQKQLKGKN-VEVIPTDVQ--------------------------DLDITNVLAVNKFFNEKK 63 (292)
T ss_dssp -CEEEEEESTTSHHHHHHHHHHTTSS-EEEEEECTT--------------------------TCCTTCHHHHHHHHHHHC
T ss_pred ccceEEEECCCChHHHHHHHHHHhCC-CeEEeccCc--------------------------cCCCCCHHHHHHHHHhcC
Confidence 45899999999999999999999999 699998774 279999999999998 7
Q ss_pred CCEEEEcCCCCC---CCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCccccccCCCCcCCCCCCCCCCCCCCchHH
Q 047227 84 AEVVFHMAAPNS---SINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDFYS 160 (485)
Q Consensus 84 ~d~Vih~aa~~~---~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy~~~~~~~~~~~e~~~~~~~~~~~Y~ 160 (485)
+|+|||+|+... ...++...+++|+.++.+++++|++.++ ||||+||.++|+..... +.+|+.+ ..|.+.|+
T Consensus 64 ~d~vih~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~-~iv~~SS~~v~~~~~~~--~~~E~~~--~~~~~~Y~ 138 (292)
T 1vl0_A 64 PNVVINCAAHTAVDKCEEQYDLAYKINAIGPKNLAAAAYSVGA-EIVQISTDYVFDGEAKE--PITEFDE--VNPQSAYG 138 (292)
T ss_dssp CSEEEECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHTC-EEEEEEEGGGSCSCCSS--CBCTTSC--CCCCSHHH
T ss_pred CCEEEECCccCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEechHHeECCCCCC--CCCCCCC--CCCccHHH
Confidence 999999999543 2356788999999999999999999998 99999999999754322 3344443 56788999
Q ss_pred HHHHHHHHHHHHHhCCCCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCceeecccHHHHHHHHHHHHHHh
Q 047227 161 ATKAEGEALVIKANGTNGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICAERAL 240 (485)
Q Consensus 161 ~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~D~a~a~~~~~~~~ 240 (485)
.+|..+|.+++.++. +++++||+++||| ...+++.++..+..++++.+.| ++.++|+|++|+|++++.+++.
T Consensus 139 ~sK~~~E~~~~~~~~----~~~~lR~~~v~G~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~v~Dva~~~~~~~~~- 210 (292)
T 1vl0_A 139 KTKLEGENFVKALNP----KYYIVRTAWLYGD-GNNFVKTMINLGKTHDELKVVH--DQVGTPTSTVDLARVVLKVIDE- 210 (292)
T ss_dssp HHHHHHHHHHHHHCS----SEEEEEECSEESS-SSCHHHHHHHHHHHCSEEEEES--SCEECCEEHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHhhCC----CeEEEeeeeeeCC-CcChHHHHHHHHhcCCcEEeec--CeeeCCccHHHHHHHHHHHHhc-
Confidence 999999999998753 5899999999999 5566777777788888777766 4789999999999999998873
Q ss_pred ccccchhhccCCcEEEeeCCCCccHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCCCCCCCCHHHHH
Q 047227 241 ASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELTYRLLGPYGMKVPQLTPSRVR 320 (485)
Q Consensus 241 ~~~~~~~~~~~g~~ynv~~~~~~t~~el~~~i~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 320 (485)
+ .+++||+++++++|+.|+++.+.+.+|.+.+...+|.+.. ..+..
T Consensus 211 -------~--~~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~-------------------~~~~~------ 256 (292)
T 1vl0_A 211 -------K--NYGTFHCTCKGICSWYDFAVEIFRLTGIDVKVTPCTTEEF-------------------PRPAK------ 256 (292)
T ss_dssp -------T--CCEEEECCCBSCEEHHHHHHHHHHHHCCCCEEEEECSTTS-------------------CCSSC------
T ss_pred -------C--CCcEEEecCCCCccHHHHHHHHHHHhCCCCceeecccccc-------------------CcccC------
Confidence 2 5789999999999999999999999998765544443210 00000
Q ss_pred hhccceeeehhhHHhhcCCCCCCChHHHHHHHHHHHH
Q 047227 321 LLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSYS 357 (485)
Q Consensus 321 ~~~~~~~~d~~ka~~~lG~~p~~~l~e~i~~~~~~~~ 357 (485)
......+|++|+++.|||+|+ +++|+++++++||+
T Consensus 257 -~~~~~~~d~~k~~~~lG~~p~-~~~~~l~~~~~~~~ 291 (292)
T 1vl0_A 257 -RPKYSVLRNYMLELTTGDITR-EWKESLKEYIDLLQ 291 (292)
T ss_dssp -CCSBCCBCCHHHHHTTCCCCC-BHHHHHHHHHHHHT
T ss_pred -CCccccccHHHHHHHcCCCCC-CHHHHHHHHHHHhc
Confidence 012456899999999999998 99999999999985
|
| >1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-39 Score=325.22 Aligned_cols=309 Identities=18% Similarity=0.202 Sum_probs=237.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccC-Cccchhhhhhh-hcCC-CeEEEEecCCCHHHHHHHhcC-
Q 047227 8 RLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALE-PHEEQGILGEA-LRSG-RAHYVSFDLRHKAQVLQALQG- 83 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~-~~~~~~~~~~~-~~~~-~v~~~~~Dl~d~~~l~~~~~~- 83 (485)
|+||||||+||||+++++.|+++| ++|++++|....... .... ..... ...+ +++++.+|++|.+++.+++++
T Consensus 29 k~vlVtGatG~IG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~ 105 (381)
T 1n7h_A 29 KIALITGITGQDGSYLTEFLLGKG-YEVHGLIRRSSNFNTQRINH--IYIDPHNVNKALMKLHYADLTDASSLRRWIDVI 105 (381)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCCSSCCCTTTTT--TC--------CCEEEEECCTTCHHHHHHHHHHH
T ss_pred CeEEEEcCCchHHHHHHHHHHHCC-CEEEEEecCCccccchhhhh--hhhccccccccceEEEECCCCCHHHHHHHHHhc
Confidence 699999999999999999999999 699999987542110 0000 00000 0012 789999999999999999985
Q ss_pred -CCEEEEcCCCCCC---CCchhhhHHHHHHHHHHHHHHHHhcCCC-----EEEEecCccccccCCCCcCCCCCCCCCCCC
Q 047227 84 -AEVVFHMAAPNSS---INNHKLHHSVNVEGTKNVIDACAELKVK-----RLIYTSSPSVVFDGVHGIINGNEALPYPPK 154 (485)
Q Consensus 84 -~d~Vih~aa~~~~---~~~~~~~~~~nv~~t~~ll~a~~~~~v~-----r~V~~SS~~vy~~~~~~~~~~~e~~~~~~~ 154 (485)
+|+|||+|+.... ..++...+++|+.++.+++++|++.+++ +|||+||.++|+.... +.+|+.+ ..
T Consensus 106 ~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~~~~~~~~~v~~SS~~vyg~~~~---~~~E~~~--~~ 180 (381)
T 1n7h_A 106 KPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHTIDSGRTVKYYQAGSSEMFGSTPP---PQSETTP--FH 180 (381)
T ss_dssp CCSEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEEEGGGGTTSCS---SBCTTSC--CC
T ss_pred CCCEEEECCcccCccccccCHHHHHHHHHHHHHHHHHHHHHhCCccCCccEEEEeCcHHHhCCCCC---CCCCCCC--CC
Confidence 7999999995432 3467788999999999999999998765 9999999999975433 4455443 46
Q ss_pred CCchHHHHHHHHHHHHHHHhCCCCceEEEEecCCcccCCCCC-C----hHHHHHHHHcCCC-eEEecCCCceeecccHHH
Q 047227 155 HNDFYSATKAEGEALVIKANGTNGLLTCCIRPSSIFGPGDRL-L----VPSLVAAARAGKS-KFIIGDGNNVYDFTYVAN 228 (485)
Q Consensus 155 ~~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~~-~----~~~~~~~~~~g~~-~~~~g~g~~~~~~i~v~D 228 (485)
|.+.|+.+|..+|.+++.++.+++++++++|++++|||+... + +..++..+..|+. ...+|++++.++|+|++|
T Consensus 181 ~~~~Y~~sK~~~E~~~~~~~~~~~~~~~~~r~~~~~gp~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~v~v~D 260 (381)
T 1n7h_A 181 PRSPYAASKCAAHWYTVNYREAYGLFACNGILFNHESPRRGENFVTRKITRALGRIKVGLQTKLFLGNLQASRDWGFAGD 260 (381)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCTTSHHHHHHHHHHHHHHTSCCCEEESCTTCEEECEEHHH
T ss_pred CCCchHHHHHHHHHHHHHHHHHhCCcEEEEEeCceeCCCCCCcchhHHHHHHHHHHHcCCCCeEEeCCCCceeeeEEHHH
Confidence 788999999999999999887779999999999999998642 2 3344555566653 446788999999999999
Q ss_pred HHHHHHHHHHHhccccchhhccCCcEEEeeCCCCccHHHHHHHHHHHcCCCCCC-ccCCHHHHHHHHHHHHHHHHHhCCC
Q 047227 229 VAHAHICAERALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPR-IKIPAFVMMPIAHMVELTYRLLGPY 307 (485)
Q Consensus 229 ~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~~t~~el~~~i~~~~g~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~ 307 (485)
+|++++.+++. ..+++||+++++++++.|+++.+.+.+|.+.+. +.++..
T Consensus 261 va~a~~~~~~~----------~~~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~------------------- 311 (381)
T 1n7h_A 261 YVEAMWLMLQQ----------EKPDDYVVATEEGHTVEEFLDVSFGYLGLNWKDYVEIDQR------------------- 311 (381)
T ss_dssp HHHHHHHHHTS----------SSCCEEEECCSCEEEHHHHHHHHHHHTTCCGGGTEEECGG-------------------
T ss_pred HHHHHHHHHhC----------CCCCeEEeeCCCCCcHHHHHHHHHHHcCCCcccccccCcc-------------------
Confidence 99999988762 224799999999999999999999999975321 111100
Q ss_pred CCCCCCCCHHHHHhhccceeeehhhHHhhcCCCCCCChHHHHHHHHHHHHHhHhc
Q 047227 308 GMKVPQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSYSHLRAE 362 (485)
Q Consensus 308 ~~~~p~~~~~~~~~~~~~~~~d~~ka~~~lG~~p~~~l~e~i~~~~~~~~~~~~~ 362 (485)
...+. ......+|++|+++.|||+|.++++|+++++++||.+....
T Consensus 312 -----~~~~~----~~~~~~~d~~k~~~~lG~~p~~~l~e~l~~~~~~~~~~~~~ 357 (381)
T 1n7h_A 312 -----YFRPA----EVDNLQGDASKAKEVLGWKPQVGFEKLVKMMVDEDLELAKR 357 (381)
T ss_dssp -----GSCSS----CCCBCCBCCHHHHHHHCCCCCSCHHHHHHHHHHHHHHHHHH
T ss_pred -----cCCcc----ccccccCCHHHHHHhcCCcccCCHHHHHHHHHHHHHhhccc
Confidence 00000 01234579999999999999889999999999999887654
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-38 Score=308.48 Aligned_cols=277 Identities=18% Similarity=0.176 Sum_probs=216.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCCC
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGAE 85 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~d 85 (485)
++|+|||||+ ||||+++++.|+++| ++|++++|.... ...+...+++++.+|+.|.+ ++++|
T Consensus 4 m~~~ilVtGa-G~iG~~l~~~L~~~g-~~V~~~~r~~~~-----------~~~~~~~~~~~~~~D~~d~~-----~~~~d 65 (286)
T 3ius_A 4 MTGTLLSFGH-GYTARVLSRALAPQG-WRIIGTSRNPDQ-----------MEAIRASGAEPLLWPGEEPS-----LDGVT 65 (286)
T ss_dssp -CCEEEEETC-CHHHHHHHHHHGGGT-CEEEEEESCGGG-----------HHHHHHTTEEEEESSSSCCC-----CTTCC
T ss_pred CcCcEEEECC-cHHHHHHHHHHHHCC-CEEEEEEcChhh-----------hhhHhhCCCeEEEecccccc-----cCCCC
Confidence 3589999998 999999999999999 599999987541 11223368999999999943 78999
Q ss_pred EEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHh--cCCCEEEEecCccccccCCCCcCCCCCCCCCCCCCCchHHHHH
Q 047227 86 VVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAE--LKVKRLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDFYSATK 163 (485)
Q Consensus 86 ~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~--~~v~r~V~~SS~~vy~~~~~~~~~~~e~~~~~~~~~~~Y~~sK 163 (485)
+|||+|+..... + ..+.+++++|++ .+++||||+||.++|+...... .+|+. +..|.+.|+.+|
T Consensus 66 ~vi~~a~~~~~~-~---------~~~~~l~~a~~~~~~~~~~~v~~Ss~~vyg~~~~~~--~~E~~--~~~p~~~Y~~sK 131 (286)
T 3ius_A 66 HLLISTAPDSGG-D---------PVLAALGDQIAARAAQFRWVGYLSTTAVYGDHDGAW--VDETT--PLTPTAARGRWR 131 (286)
T ss_dssp EEEECCCCBTTB-C---------HHHHHHHHHHHHTGGGCSEEEEEEEGGGGCCCTTCE--ECTTS--CCCCCSHHHHHH
T ss_pred EEEECCCccccc-c---------HHHHHHHHHHHhhcCCceEEEEeecceecCCCCCCC--cCCCC--CCCCCCHHHHHH
Confidence 999999954322 1 235789999999 6799999999999997543322 34444 357889999999
Q ss_pred HHHHHHHHHHhCCCCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCceeecccHHHHHHHHHHHHHHhccc
Q 047227 164 AEGEALVIKANGTNGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICAERALASE 243 (485)
Q Consensus 164 ~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~D~a~a~~~~~~~~~~~ 243 (485)
..+|++++.+ .+++++++||+++|||+...+ ..+..|....+.++ ++.++|+|++|+|++++.+++.
T Consensus 132 ~~~E~~~~~~---~~~~~~ilRp~~v~G~~~~~~-----~~~~~~~~~~~~~~-~~~~~~i~v~Dva~a~~~~~~~---- 198 (286)
T 3ius_A 132 VMAEQQWQAV---PNLPLHVFRLAGIYGPGRGPF-----SKLGKGGIRRIIKP-GQVFSRIHVEDIAQVLAASMAR---- 198 (286)
T ss_dssp HHHHHHHHHS---TTCCEEEEEECEEEBTTBSSS-----TTSSSSCCCEEECT-TCCBCEEEHHHHHHHHHHHHHS----
T ss_pred HHHHHHHHhh---cCCCEEEEeccceECCCchHH-----HHHhcCCccccCCC-CcccceEEHHHHHHHHHHHHhC----
Confidence 9999999996 689999999999999986542 33456777777665 5789999999999999999873
Q ss_pred cchhhccCCcEEEeeCCCCccHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCCCCCCCCHHHHHhhc
Q 047227 244 VTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELTYRLLGPYGMKVPQLTPSRVRLLS 323 (485)
Q Consensus 244 ~~~~~~~~g~~ynv~~~~~~t~~el~~~i~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 323 (485)
+ ..|++||+++++++|+.|+++.+.+.+|.+.+.. ++.. .....+....++.
T Consensus 199 ----~-~~g~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~-~~~~----------------------~~~~~~~~~~~~~ 250 (286)
T 3ius_A 199 ----P-DPGAVYNVCDDEPVPPQDVIAYAAELQGLPLPPA-VDFD----------------------KADLTPMARSFYS 250 (286)
T ss_dssp ----C-CTTCEEEECCSCCBCHHHHHHHHHHHHTCCCCCE-EEGG----------------------GSCCCHHHHHTTS
T ss_pred ----C-CCCCEEEEeCCCCccHHHHHHHHHHHcCCCCCcc-cchh----------------------hhccChhHHHhhc
Confidence 2 2578999999999999999999999999875532 1111 0112223333445
Q ss_pred cceeeehhhHHhhcCCCCCC-ChHHHHHHHHHH
Q 047227 324 CSRTFDCSKAKDLLGYMPIV-PLEEGIKRTVDS 355 (485)
Q Consensus 324 ~~~~~d~~ka~~~lG~~p~~-~l~e~i~~~~~~ 355 (485)
....+|++|+++.|||+|++ +++|+++++++.
T Consensus 251 ~~~~~d~~k~~~~lG~~p~~p~~~e~l~~~~~~ 283 (286)
T 3ius_A 251 ENKRVRNDRIKEELGVRLKYPNYRVGLEALQAD 283 (286)
T ss_dssp CCCEECCHHHHHTTCCCCSCSSHHHHHHHHHHT
T ss_pred CCceeehHHHHHHhCCCCCcCCHHHHHHHHHHh
Confidence 67789999999999999999 699999999864
|
| >2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-38 Score=316.09 Aligned_cols=303 Identities=17% Similarity=0.139 Sum_probs=236.8
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCC------ceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHH
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDM------FSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVL 78 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~------~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~ 78 (485)
.++|+||||||+||||+++++.|+++|+ ++|++++|....... ....+++++.+|++|++++.
T Consensus 12 ~~~~~vlVtGa~G~iG~~l~~~L~~~g~~~~r~~~~V~~~~r~~~~~~~-----------~~~~~~~~~~~Dl~d~~~~~ 80 (342)
T 2hrz_A 12 FQGMHIAIIGAAGMVGRKLTQRLVKDGSLGGKPVEKFTLIDVFQPEAPA-----------GFSGAVDARAADLSAPGEAE 80 (342)
T ss_dssp CSCEEEEEETTTSHHHHHHHHHHHHHCEETTEEEEEEEEEESSCCCCCT-----------TCCSEEEEEECCTTSTTHHH
T ss_pred ccCCEEEEECCCcHHHHHHHHHHHhcCCcccCCCceEEEEEccCCcccc-----------ccCCceeEEEcCCCCHHHHH
Confidence 4578999999999999999999999994 489999887532111 12356889999999999999
Q ss_pred HHhc-CCCEEEEcCCCCC--CCCchhhhHHHHHHHHHHHHHHHHhcC-----CCEEEEecCccccccCCCCcCCCCCCCC
Q 047227 79 QALQ-GAEVVFHMAAPNS--SINNHKLHHSVNVEGTKNVIDACAELK-----VKRLIYTSSPSVVFDGVHGIINGNEALP 150 (485)
Q Consensus 79 ~~~~-~~d~Vih~aa~~~--~~~~~~~~~~~nv~~t~~ll~a~~~~~-----v~r~V~~SS~~vy~~~~~~~~~~~e~~~ 150 (485)
++++ ++|+|||+|+... +..++...+++|+.++.+++++|++.+ +++|||+||.++|+.... .+.+|+.+
T Consensus 81 ~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~nv~g~~~l~~~~~~~~~~~~~~~~iv~~SS~~~~~~~~~--~~~~E~~~ 158 (342)
T 2hrz_A 81 KLVEARPDVIFHLAAIVSGEAELDFDKGYRINLDGTRYLFDAIRIANGKDGYKPRVVFTSSIAVFGAPLP--YPIPDEFH 158 (342)
T ss_dssp HHHHTCCSEEEECCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEEEGGGCCSSCC--SSBCTTCC
T ss_pred HHHhcCCCEEEECCccCcccccccHHHHHHHHHHHHHHHHHHHHhcccccCCCcEEEEeCchHhhCCCCC--CCcCCCCC
Confidence 9995 8999999999543 234677889999999999999999886 899999999999975322 23455443
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHhCCCCceEEEEecCCccc-CCCC-----CChHHHHHHHHcCCCeEEecCCCceeecc
Q 047227 151 YPPKHNDFYSATKAEGEALVIKANGTNGLLTCCIRPSSIFG-PGDR-----LLVPSLVAAARAGKSKFIIGDGNNVYDFT 224 (485)
Q Consensus 151 ~~~~~~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G-p~~~-----~~~~~~~~~~~~g~~~~~~g~g~~~~~~i 224 (485)
..|.+.|+.+|..+|.+++.++...+++.+++|++++|| |+.. .++..++..+..+++..++++++...+++
T Consensus 159 --~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~ir~~~v~g~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (342)
T 2hrz_A 159 --TTPLTSYGTQKAICELLLSDYSRRGFFDGIGIRLPTICIRPGKPNAAASGFFSNILREPLVGQEAVLPVPESIRHWHA 236 (342)
T ss_dssp --CCCSSHHHHHHHHHHHHHHHHHHTTSCEEEEEEECEETTCCSSCCCSGGGHHHHHHHHHHTTCCEEECSCTTCEEEEE
T ss_pred --CCCcchHHHHHHHHHHHHHHHHHhcCCCceeEEeeeEEecCCCCcchhHHHHHHHHHHHhcCCCeeccCCCccceeeE
Confidence 467889999999999999999888889999999999998 7642 24566777788888877777777888899
Q ss_pred cHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCCCccHHHHHHHHHHHcCCCCC--CccCCHHHHHHHHHHHHHHHH
Q 047227 225 YVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRP--RIKIPAFVMMPIAHMVELTYR 302 (485)
Q Consensus 225 ~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~~t~~el~~~i~~~~g~~~~--~~~~p~~~~~~~~~~~~~~~~ 302 (485)
|++|+|++++.+++.... ....+++||++ ++++|+.|+++.+.+.+|.+.+ ....|..
T Consensus 237 ~v~Dva~~~~~~~~~~~~-----~~~~~~~~ni~-g~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~-------------- 296 (342)
T 2hrz_A 237 SPRSAVGFLIHGAMIDVE-----KVGPRRNLSMP-GLSATVGEQIEALRKVAGEKAVALIRREPNE-------------- 296 (342)
T ss_dssp CHHHHHHHHHHHHHSCHH-----HHCSCCEEECC-CEEEEHHHHHHHHHHHHCHHHHTTEEECCCH--------------
T ss_pred ehHHHHHHHHHHHhcccc-----ccCCccEEEcC-CCCCCHHHHHHHHHHHcCcccccceeeccCc--------------
Confidence 999999999998763111 00246799996 4789999999999999986531 1111211
Q ss_pred HhCCCCCCCCCCCHHHHHhh-ccceeeehhhHHhhcCCCCCCChHHHHHHHHHHHH
Q 047227 303 LLGPYGMKVPQLTPSRVRLL-SCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSYS 357 (485)
Q Consensus 303 ~~~~~~~~~p~~~~~~~~~~-~~~~~~d~~ka~~~lG~~p~~~l~e~i~~~~~~~~ 357 (485)
...... .....+|++|+++ |||+|.++++|+++++++||.
T Consensus 297 --------------~~~~~~~~~~~~~d~~k~~~-lG~~p~~~l~e~l~~~~~~~~ 337 (342)
T 2hrz_A 297 --------------MIMRMCEGWAPGFEAKRARE-LGFTAESSFEEIIQVHIEDEL 337 (342)
T ss_dssp --------------HHHHHHTTSCCCBCCHHHHH-TTCCCCSSHHHHHHHHHHHHS
T ss_pred --------------chhhhhcccccccChHHHHH-cCCCCCCCHHHHHHHHHHHhc
Confidence 000111 1123579999999 999999999999999999996
|
| >1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-38 Score=345.08 Aligned_cols=318 Identities=19% Similarity=0.222 Sum_probs=237.0
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc--
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ-- 82 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 82 (485)
.++|+||||||+||||+++++.|+++| ++|++++|...... .....+. .+...+++++.+|++|++++.++++
T Consensus 9 ~~~~~ilVTGatG~IG~~l~~~L~~~G-~~V~~~~r~~~~~~---~~~~~l~-~~~~~~v~~v~~Dl~d~~~l~~~~~~~ 83 (699)
T 1z45_A 9 STSKIVLVTGGAGYIGSHTVVELIENG-YDCVVADNLSNSTY---DSVARLE-VLTKHHIPFYEVDLCDRKGLEKVFKEY 83 (699)
T ss_dssp --CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCSSCCT---HHHHHHH-HHHTSCCCEEECCTTCHHHHHHHHHHS
T ss_pred cCCCEEEEECCCCHHHHHHHHHHHHCc-CEEEEEECCCcchH---HHHHHHh-hccCCceEEEEcCCCCHHHHHHHHHhC
Confidence 456899999999999999999999999 59999988653211 0000011 1124678999999999999999998
Q ss_pred CCCEEEEcCCCCC---CCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCccccccCCC--CcCCCCCCCCCCCCCCc
Q 047227 83 GAEVVFHMAAPNS---SINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVVFDGVH--GIINGNEALPYPPKHND 157 (485)
Q Consensus 83 ~~d~Vih~aa~~~---~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy~~~~~--~~~~~~e~~~~~~~~~~ 157 (485)
++|+|||+|+... ...++...+++|+.++.+++++|++.+++||||+||.++|+.... ...+.+|.. +..|.+
T Consensus 84 ~~D~Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~~~iV~~SS~~vyg~~~~~~~~~~~~E~~--~~~p~~ 161 (699)
T 1z45_A 84 KIDSVIHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVSKFVFSSSATVYGDATRFPNMIPIPEEC--PLGPTN 161 (699)
T ss_dssp CCCEEEECCSCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEGGGGCCGGGSTTCCSBCTTS--CCCCCS
T ss_pred CCCEEEECCcccCcCccccCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECcHHHhCCCccccccCCccccC--CCCCCC
Confidence 8999999999543 223566789999999999999999999999999999999974321 112334443 346788
Q ss_pred hHHHHHHHHHHHHHHHhCC--CCceEEEEecCCcccCCCC------------CChHHHHHHHHc-CCCeEEec------C
Q 047227 158 FYSATKAEGEALVIKANGT--NGLLTCCIRPSSIFGPGDR------------LLVPSLVAAARA-GKSKFIIG------D 216 (485)
Q Consensus 158 ~Y~~sK~~~E~~~~~~~~~--~g~~~~ilRp~~v~Gp~~~------------~~~~~~~~~~~~-g~~~~~~g------~ 216 (485)
.|+.+|..+|++++.++.+ .+++++++||+++|||+.. .+++.+...+.. ++++.++| +
T Consensus 162 ~Y~~sK~~~E~~~~~~~~~~~~g~~~~ilR~~~vyG~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 241 (699)
T 1z45_A 162 PYGHTKYAIENILNDLYNSDKKSWKFAILRYFNPIGAHPSGLIGEDPLGIPNNLLPYMAQVAVGRREKLYIFGDDYDSRD 241 (699)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTSCEEEEEEECEEECCCTTSSCCCCCSSSCCSHHHHHHHHHTTSSSCCCCC------CC
T ss_pred hHHHHHHHHHHHHHHHHHhccCCCcEEEEEeccccCCCcccccccccccchhHHHHHHHHHHhcCCCceEEeCCcccCCC
Confidence 9999999999999988655 6899999999999998532 234444443332 34566666 6
Q ss_pred CCceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCCCccHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHH
Q 047227 217 GNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHM 296 (485)
Q Consensus 217 g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~~t~~el~~~i~~~~g~~~~~~~~p~~~~~~~~~~ 296 (485)
+++.++|+|++|+|++++.+++...... .....+++||+++++++++.|+++.+.+.+|.+.+....|..
T Consensus 242 g~~~~~~i~v~Dva~a~~~a~~~~~~~~--~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~-------- 311 (699)
T 1z45_A 242 GTPIRDYIHVVDLAKGHIAALQYLEAYN--ENEGLCREWNLGSGKGSTVFEVYHAFCKASGIDLPYKVTGRR-------- 311 (699)
T ss_dssp SSCEECEEEHHHHHHHHHHHHHHHHHSC--TTCCEEEEEEESCSCCEEHHHHHHHHHHHHTCCCCC--------------
T ss_pred CCeeEeeEEHHHHHHHHHHHHhhhhccc--cccCCceEEEECCCCCCcHHHHHHHHHHHhCCCCCceecCCC--------
Confidence 8899999999999999999887432100 001235799999999999999999999999987553221110
Q ss_pred HHHHHHHhCCCCCCCCCCCHHHHHhhccceeeehhhHHhhcCCCCCCChHHHHHHHHHHHHHhHhc
Q 047227 297 VELTYRLLGPYGMKVPQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSYSHLRAE 362 (485)
Q Consensus 297 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~d~~ka~~~lG~~p~~~l~e~i~~~~~~~~~~~~~ 362 (485)
+ . ......+|++|++++|||+|.++++|+++++++||++....
T Consensus 312 ---------------~----~----~~~~~~~d~~ka~~~LG~~p~~~l~egl~~~~~w~~~~~~~ 354 (699)
T 1z45_A 312 ---------------A----G----DVLNLTAKPDRAKRELKWQTELQVEDSCKDLWKWTTENPFG 354 (699)
T ss_dssp --------------------------CCCCCBCCHHHHHHTCCCCCCCHHHHHHHHHHHHHHCTTC
T ss_pred ---------------C----C----ccccccCCHHHHHHhcCCCCCCCHHHHHHHHHHHHHhCCcc
Confidence 0 0 01235689999999999999999999999999999876543
|
| >1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-38 Score=342.91 Aligned_cols=319 Identities=19% Similarity=0.234 Sum_probs=245.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhc-CCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHH-HHHHhcC
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRY-DMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQ-VLQALQG 83 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~-G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~-l~~~~~~ 83 (485)
++|+|||||||||||+++++.|+++ | ++|++++|..... .......+++++.+|++|.++ +.+++++
T Consensus 314 ~~~~VLVTGatG~IG~~l~~~Ll~~~g-~~V~~~~r~~~~~----------~~~~~~~~v~~v~~Dl~d~~~~~~~~~~~ 382 (660)
T 1z7e_A 314 RRTRVLILGVNGFIGNHLTERLLREDH-YEVYGLDIGSDAI----------SRFLNHPHFHFVEGDISIHSEWIEYHVKK 382 (660)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHHHSSS-EEEEEEESCCTTT----------GGGTTCTTEEEEECCTTTCHHHHHHHHHH
T ss_pred cCceEEEEcCCcHHHHHHHHHHHhcCC-CEEEEEEcCchhh----------hhhccCCceEEEECCCCCcHHHHHHhhcC
Confidence 5689999999999999999999998 7 6999999875421 111224579999999999765 7778899
Q ss_pred CCEEEEcCCCCC---CCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCccccccCCCCcCCCCCCCCC-----CCCC
Q 047227 84 AEVVFHMAAPNS---SINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVVFDGVHGIINGNEALPY-----PPKH 155 (485)
Q Consensus 84 ~d~Vih~aa~~~---~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy~~~~~~~~~~~e~~~~-----~~~~ 155 (485)
+|+|||+|+... ...++...+++|+.++.+++++|++.+ +||||+||.++|+...... .+|+.+. ...|
T Consensus 383 ~D~Vih~Aa~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~-~r~V~~SS~~vyg~~~~~~--~~E~~~~~~~~p~~~p 459 (660)
T 1z7e_A 383 CDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYR-KRIIFPSTSEVYGMCSDKY--FDEDHSNLIVGPVNKP 459 (660)
T ss_dssp CSEEEECCCCCCTHHHHHSHHHHHHHHTHHHHHHHHHHHHTT-CEEEEECCGGGGBTCCSSS--BCTTTCCEEECCTTCT
T ss_pred CCEEEECceecCccccccCHHHHHHhhhHHHHHHHHHHHHhC-CEEEEEecHHHcCCCCCcc--cCCCccccccCcccCC
Confidence 999999999543 234677889999999999999999999 8999999999997543332 3343321 1256
Q ss_pred CchHHHHHHHHHHHHHHHhCCCCceEEEEecCCcccCCCC----------CChHHHHHHHHcCCCeEEecCCCceeeccc
Q 047227 156 NDFYSATKAEGEALVIKANGTNGLLTCCIRPSSIFGPGDR----------LLVPSLVAAARAGKSKFIIGDGNNVYDFTY 225 (485)
Q Consensus 156 ~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~----------~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~ 225 (485)
.+.|+.+|..+|.+++.++.+.+++++++||+++|||+.. ..++.++..+..|+++.+++++++.++|+|
T Consensus 460 ~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRpg~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~ 539 (660)
T 1z7e_A 460 RWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTD 539 (660)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHCCCEEEEEECSEESTTSSCHHHHTTTCSCHHHHHHHHHHHTCCEEEEGGGCCEEECEE
T ss_pred CCCcHHHHHHHHHHHHHHHHHcCCCEEEECCCcccCCCccccccccccccchHHHHHHHHHcCCCcEEeCCCCeEEEEEE
Confidence 6789999999999999987777999999999999999863 346778888888998888999999999999
Q ss_pred HHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCC-CccHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHh
Q 047227 226 VANVAHAHICAERALASEVTVAEKAAGQAYFVTNME-SIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELTYRLL 304 (485)
Q Consensus 226 v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~-~~t~~el~~~i~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~ 304 (485)
++|+|++++.+++.... ...|++||+++++ ++|+.|+++.+.+.+|.+...+.+|.+........ ....
T Consensus 540 v~Dva~ai~~~l~~~~~------~~~g~~~ni~~~~~~~s~~el~~~i~~~~g~~~~~~~~p~~~~~~~~~~----~~~~ 609 (660)
T 1z7e_A 540 IRDGIEALYRIIENAGN------RCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVES----SSYY 609 (660)
T ss_dssp HHHHHHHHHHHHHCGGG------TTTTEEEEECCGGGEEEHHHHHHHHHHHHHHCTTGGGSCCCCCEEEECT----HHHH
T ss_pred HHHHHHHHHHHHhCccc------cCCCeEEEECCCCCCcCHHHHHHHHHHHhcCCCcccccCccccccchhc----cccc
Confidence 99999999998773111 1357899999986 89999999999999987654444443100000000 0000
Q ss_pred CCCCCCCCCCCHHHHHhhccceeeehhhHHhhcCCCCCCChHHHHHHHHHHHHHhH
Q 047227 305 GPYGMKVPQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSYSHLR 360 (485)
Q Consensus 305 ~~~~~~~p~~~~~~~~~~~~~~~~d~~ka~~~lG~~p~~~l~e~i~~~~~~~~~~~ 360 (485)
+. .. .......+|++|++++|||+|.++++|+++++++||++..
T Consensus 610 ~~---~~---------~~~~~~~~d~~ka~~~LG~~p~~~l~egl~~~i~~~~~~~ 653 (660)
T 1z7e_A 610 GK---GY---------QDVEHRKPSIRNAHRCLDWEPKIDMQETIDETLDFFLRTV 653 (660)
T ss_dssp CT---TC---------CCCSCCCBCCHHHHHHHCCCCCCCHHHHHHHHHHHHHTTS
T ss_pred cc---cc---------cchhhcccCHHHHHHhcCCCccCcHHHHHHHHHHHHHhhc
Confidence 00 00 0012456799999999999999999999999999997754
|
| >2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-38 Score=313.10 Aligned_cols=288 Identities=20% Similarity=0.237 Sum_probs=203.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcC--C
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQG--A 84 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~--~ 84 (485)
+|+|||||||||||+++++.|+++| ++|++++|.+.. ++ ++.+|++|++++.+++++ +
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~-----------------~~--~~~~Dl~d~~~~~~~~~~~~~ 61 (315)
T 2ydy_A 2 NRRVLVTGATGLLGRAVHKEFQQNN-WHAVGCGFRRAR-----------------PK--FEQVNLLDSNAVHHIIHDFQP 61 (315)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHTTT-CEEEEEC-------------------------------------CHHHHHHHCC
T ss_pred CCeEEEECCCcHHHHHHHHHHHhCC-CeEEEEccCCCC-----------------CC--eEEecCCCHHHHHHHHHhhCC
Confidence 4799999999999999999999999 699999876431 12 678999999999999875 9
Q ss_pred CEEEEcCCCCC---CCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCccccccCCCCcCCCCCCCCCCCCCCchHHH
Q 047227 85 EVVFHMAAPNS---SINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDFYSA 161 (485)
Q Consensus 85 d~Vih~aa~~~---~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy~~~~~~~~~~~e~~~~~~~~~~~Y~~ 161 (485)
|+|||+|+... +..++...+++|+.++.+++++|++.++ ||||+||.++|+. .. .+.+|+.+ ..|.+.|+.
T Consensus 62 d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~-~~v~~SS~~v~~~-~~--~~~~E~~~--~~~~~~Y~~ 135 (315)
T 2ydy_A 62 HVIVHCAAERRPDVVENQPDAASQLNVDASGNLAKEAAAVGA-FLIYISSDYVFDG-TN--PPYREEDI--PAPLNLYGK 135 (315)
T ss_dssp SEEEECC-------------------CHHHHHHHHHHHHHTC-EEEEEEEGGGSCS-SS--CSBCTTSC--CCCCSHHHH
T ss_pred CEEEECCcccChhhhhcCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEchHHHcCC-CC--CCCCCCCC--CCCcCHHHH
Confidence 99999999432 3457788999999999999999999987 9999999999975 22 23345443 467889999
Q ss_pred HHHHHHHHHHHHhCCCCceEEEEecCCcccCCCC---CChHHHHHHHH-cCCCeEEecCCCceeecccHHHHHHHHHHHH
Q 047227 162 TKAEGEALVIKANGTNGLLTCCIRPSSIFGPGDR---LLVPSLVAAAR-AGKSKFIIGDGNNVYDFTYVANVAHAHICAE 237 (485)
Q Consensus 162 sK~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~---~~~~~~~~~~~-~g~~~~~~g~g~~~~~~i~v~D~a~a~~~~~ 237 (485)
+|..+|++++.+. ++++++||+++|||++. .+++.++..+. .+..+.+. +++.++|+|++|+|++++.++
T Consensus 136 sK~~~e~~~~~~~----~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~v~Dva~a~~~~~ 209 (315)
T 2ydy_A 136 TKLDGEKAVLENN----LGAAVLRIPILYGEVEKLEESAVTVMFDKVQFSNKSANMD--HWQQRFPTHVKDVATVCRQLA 209 (315)
T ss_dssp HHHHHHHHHHHHC----TTCEEEEECSEECSCSSGGGSTTGGGHHHHHCCSSCEEEE--CSSBBCCEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC----CCeEEEeeeeeeCCCCcccccHHHHHHHHHHhcCCCeeec--cCceECcEEHHHHHHHHHHHH
Confidence 9999999999863 56799999999999876 56666777777 77776554 457899999999999999887
Q ss_pred HHhccccchhhccCCcEEEeeCCCCccHHHHHHHHHHHcCCCCCC-ccCCHHHHHHHHHHHHHHHHHhCCCCCCCCCCCH
Q 047227 238 RALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPR-IKIPAFVMMPIAHMVELTYRLLGPYGMKVPQLTP 316 (485)
Q Consensus 238 ~~~~~~~~~~~~~~g~~ynv~~~~~~t~~el~~~i~~~~g~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 316 (485)
+.... ....+++||+++++++++.|+++.+.+.+|.+.+. ..+|.. +...
T Consensus 210 ~~~~~-----~~~~~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~-----------------------~~~~- 260 (315)
T 2ydy_A 210 EKRML-----DPSIKGTFHWSGNEQMTKYEMACAIADAFNLPSSHLRPITDS-----------------------PVLG- 260 (315)
T ss_dssp HHHHT-----CTTCCEEEECCCSCCBCHHHHHHHHHHHTTCCCTTEEEECSC-----------------------CCSS-
T ss_pred Hhhcc-----ccCCCCeEEEcCCCcccHHHHHHHHHHHhCCChhheeccccc-----------------------cccc-
Confidence 64210 01457899999999999999999999999987552 222210 0000
Q ss_pred HHHHhhccceeeehhhHHhhcCCCCCCChHHHHHHHHHHHHHh
Q 047227 317 SRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSYSHL 359 (485)
Q Consensus 317 ~~~~~~~~~~~~d~~ka~~~lG~~p~~~l~e~i~~~~~~~~~~ 359 (485)
........+|++|+++. ||+|.++++|+++++++||++.
T Consensus 261 ---~~~~~~~~~d~~k~~~~-G~~p~~~~~~~l~~~~~~~~~~ 299 (315)
T 2ydy_A 261 ---AQRPRNAQLDCSKLETL-GIGQRTPFRIGIKESLWPFLID 299 (315)
T ss_dssp ---SCCCSBCCBCCHHHHHT-TCCCCCCHHHHHHHHHGGGCC-
T ss_pred ---cCCCcccccchHHHHhc-CCCCCCCHHHHHHHHHHHHccc
Confidence 00012456899999998 9999999999999999999764
|
| >1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-38 Score=316.77 Aligned_cols=306 Identities=21% Similarity=0.165 Sum_probs=232.5
Q ss_pred CCCCCCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhh---cCCCeEEE-EecCCCHHH
Q 047227 1 MSGEENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEAL---RSGRAHYV-SFDLRHKAQ 76 (485)
Q Consensus 1 M~~~~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~---~~~~v~~~-~~Dl~d~~~ 76 (485)
|....++|+||||||+||||+++++.|+++| ++|++++|...... . +...+ ...+++++ .+|++|.++
T Consensus 5 ~~~~~~~~~vlVTGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~----~---~~~~~~~~~~~~~~~~~~~D~~d~~~ 76 (342)
T 1y1p_A 5 NAVLPEGSLVLVTGANGFVASHVVEQLLEHG-YKVRGTARSASKLA----N---LQKRWDAKYPGRFETAVVEDMLKQGA 76 (342)
T ss_dssp TCSSCTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSHHHHH----H---HHHHHHHHSTTTEEEEECSCTTSTTT
T ss_pred cccCCCCCEEEEECCccHHHHHHHHHHHHCC-CEEEEEeCCcccHH----H---HHHHhhccCCCceEEEEecCCcChHH
Confidence 4445567899999999999999999999999 59999988643210 0 11111 12578888 799999999
Q ss_pred HHHHhcCCCEEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHh-cCCCEEEEecCccccccCCCC--cCCCCCCCC---
Q 047227 77 VLQALQGAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAE-LKVKRLIYTSSPSVVFDGVHG--IINGNEALP--- 150 (485)
Q Consensus 77 l~~~~~~~d~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~-~~v~r~V~~SS~~vy~~~~~~--~~~~~e~~~--- 150 (485)
+.++++++|+|||+|+......++...+++|+.++.+++++|++ .+++||||+||.++|+.+... ..+.+|+.+
T Consensus 77 ~~~~~~~~d~vih~A~~~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~iv~~SS~~~~~~~~~~~~~~~~~E~~~~~~ 156 (342)
T 1y1p_A 77 YDEVIKGAAGVAHIASVVSFSNKYDEVVTPAIGGTLNALRAAAATPSVKRFVLTSSTVSALIPKPNVEGIYLDEKSWNLE 156 (342)
T ss_dssp TTTTTTTCSEEEECCCCCSCCSCHHHHHHHHHHHHHHHHHHHHTCTTCCEEEEECCGGGTCCCCTTCCCCEECTTCCCHH
T ss_pred HHHHHcCCCEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEeccHHHhcCCCCCCCCcccCccccCch
Confidence 99999999999999996554567888999999999999999985 678999999999998643221 122334321
Q ss_pred -----------CCCCCCchHHHHHHHHHHHHHHHhCCC--CceEEEEecCCcccCCCCC-----ChHHHHHHHHcCCCeE
Q 047227 151 -----------YPPKHNDFYSATKAEGEALVIKANGTN--GLLTCCIRPSSIFGPGDRL-----LVPSLVAAARAGKSKF 212 (485)
Q Consensus 151 -----------~~~~~~~~Y~~sK~~~E~~~~~~~~~~--g~~~~ilRp~~v~Gp~~~~-----~~~~~~~~~~~g~~~~ 212 (485)
.+..|.+.|+.+|..+|.+++.++.++ +++++++||+++|||.... .++.++..+..|++..
T Consensus 157 ~~~~~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~~~rp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (342)
T 1y1p_A 157 SIDKAKTLPESDPQKSLWVYAASKTEAELAAWKFMDENKPHFTLNAVLPNYTIGTIFDPETQSGSTSGWMMSLFNGEVSP 236 (342)
T ss_dssp HHHHHHHSCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHCCSSEEEEEEESEEECCCSCTTTCCCHHHHHHHHHHTTCCCH
T ss_pred hhhhhccccccccccchHHHHHHHHHHHHHHHHHHHhcCCCceEEEEcCCceECCCCCCCCCCccHHHHHHHHHcCCCcc
Confidence 023456789999999999999887543 7899999999999997642 5677888888888877
Q ss_pred EecCCCceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCCCccHHHHHHHHHHHcCCCCCCccCCHHHHHH
Q 047227 213 IIGDGNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMP 292 (485)
Q Consensus 213 ~~g~g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~~t~~el~~~i~~~~g~~~~~~~~p~~~~~~ 292 (485)
+++++ +.++|+|++|+|++++.+++. +...|+.+ +.+++++|+.|+++.+.+.+|.. . + +.
T Consensus 237 ~~~~~-~~~~~v~v~Dva~a~~~~~~~--------~~~~g~~~-~~~g~~~s~~e~~~~i~~~~~~~-~-~--~~----- 297 (342)
T 1y1p_A 237 ALALM-PPQYYVSAVDIGLLHLGCLVL--------PQIERRRV-YGTAGTFDWNTVLATFRKLYPSK-T-F--PA----- 297 (342)
T ss_dssp HHHTC-CSEEEEEHHHHHHHHHHHHHC--------TTCCSCEE-EECCEEECHHHHHHHHHHHCTTS-C-C--CC-----
T ss_pred ccccC-CcCCEeEHHHHHHHHHHHHcC--------cccCCceE-EEeCCCCCHHHHHHHHHHHCCCc-c-C--CC-----
Confidence 67765 678999999999999988762 22345544 45667899999999999999864 1 1 11
Q ss_pred HHHHHHHHHHHhCCCCCCCCCCCHHHHHhhccceeeehhhHHhhcCC---CCCCChHHHHHHHHHHHH
Q 047227 293 IAHMVELTYRLLGPYGMKVPQLTPSRVRLLSCSRTFDCSKAKDLLGY---MPIVPLEEGIKRTVDSYS 357 (485)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~d~~ka~~~lG~---~p~~~l~e~i~~~~~~~~ 357 (485)
..+.. ......+|++|+++.||| .+..+++|+++++++||+
T Consensus 298 -----------------~~~~~-------~~~~~~~d~~k~~~~lg~~~~~~~~~l~~~l~~~~~~~~ 341 (342)
T 1y1p_A 298 -----------------DFPDQ-------GQDLSKFDTAPSLEILKSLGRPGWRSIEESIKDLVGSET 341 (342)
T ss_dssp -----------------CCCCC-------CCCCCEECCHHHHHHHHHTTCCSCCCHHHHHHHHHCCSC
T ss_pred -----------------CCCcc-------ccccccCChHHHHHHHhhcccCCcCCHHHHHHHHHHHhh
Confidence 00100 011256799999998887 566799999999999874
|
| >2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-38 Score=309.12 Aligned_cols=304 Identities=21% Similarity=0.228 Sum_probs=210.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEeec-CCccccCCccchhhhhhhh-cCCCeEEEEecCCCHHHHHHHhcCC
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADL-SDSIALEPHEEQGILGEAL-RSGRAHYVSFDLRHKAQVLQALQGA 84 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r-~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~~~ 84 (485)
+|+||||||+||||+++++.|+++| ++|++++| ..... ..... +.... ...+++++.+|++|++++.++++++
T Consensus 1 ~k~vlVTGatG~iG~~l~~~L~~~G-~~V~~~~r~~~~~~-~~~~~---~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~ 75 (322)
T 2p4h_X 1 KGRVCVTGGTGFLGSWIIKSLLENG-YSVNTTIRADPERK-RDVSF---LTNLPGASEKLHFFNADLSNPDSFAAAIEGC 75 (322)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTT-CEEEEECCCC-----CCCHH---HHTSTTHHHHEEECCCCTTCGGGGHHHHTTC
T ss_pred CCEEEEECChhHHHHHHHHHHHHCC-CEEEEEEeCCccch-hHHHH---HHhhhccCCceEEEecCCCCHHHHHHHHcCC
Confidence 4789999999999999999999999 58998877 43210 00000 11000 0125788999999999999999999
Q ss_pred CEEEEcCCCCC-CCCc-hhhhHHHHHHHHHHHHHHHHhc-CCCEEEEecCccccccCCCCcCCCCCCCCCC------CCC
Q 047227 85 EVVFHMAAPNS-SINN-HKLHHSVNVEGTKNVIDACAEL-KVKRLIYTSSPSVVFDGVHGIINGNEALPYP------PKH 155 (485)
Q Consensus 85 d~Vih~aa~~~-~~~~-~~~~~~~nv~~t~~ll~a~~~~-~v~r~V~~SS~~vy~~~~~~~~~~~e~~~~~------~~~ 155 (485)
|+|||+|+... ...+ ...++++|+.|+.+++++|++. +++||||+||.++++.......+.+|+.+.+ ..|
T Consensus 76 d~vih~A~~~~~~~~~~~~~~~~~nv~gt~~l~~aa~~~~~~~~iV~~SS~~~~~~~~~~~~~~~e~~~~~~~~~~~~~p 155 (322)
T 2p4h_X 76 VGIFHTASPIDFAVSEPEEIVTKRTVDGALGILKACVNSKTVKRFIYTSSGSAVSFNGKDKDVLDESDWSDVDLLRSVKP 155 (322)
T ss_dssp SEEEECCCCC--------CHHHHHHHHHHHHHHHHHTTCSSCCEEEEEEEGGGTSCSSSCCSEECTTCCCCHHHHHHHCC
T ss_pred CEEEEcCCcccCCCCChHHHHHHHHHHHHHHHHHHHHhcCCccEEEEeccHHHcccCCCCCeecCCccccchhhhcccCc
Confidence 99999998432 2223 2458899999999999999998 7999999999886543222212233432211 123
Q ss_pred Cc-hHHHHHHHHHHHHHHHhCCCCceEEEEecCCcccCCCCCChHHHHH---HHHcCCCeEEecCCCceeecccHHHHHH
Q 047227 156 ND-FYSATKAEGEALVIKANGTNGLLTCCIRPSSIFGPGDRLLVPSLVA---AARAGKSKFIIGDGNNVYDFTYVANVAH 231 (485)
Q Consensus 156 ~~-~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~~~~~~~~~---~~~~g~~~~~~g~g~~~~~~i~v~D~a~ 231 (485)
.+ .|+.||..+|.+++++.+.+|++++++||+++|||+....++..+. ....|+... +++ ...+|+|++|+|+
T Consensus 156 ~~~~Y~~sK~~~e~~~~~~~~~~gi~~~~lrp~~v~g~~~~~~~~~~~~~~~~~~~g~~~~-~~~--~~~~~i~v~Dva~ 232 (322)
T 2p4h_X 156 FGWNYAVSKTLAEKAVLEFGEQNGIDVVTLILPFIVGRFVCPKLPDSIEKALVLVLGKKEQ-IGV--TRFHMVHVDDVAR 232 (322)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECEEESCCCSSSCCHHHHHHTHHHHSCGGG-CCE--EEEEEEEHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHhcCCcEEEEcCCceECCCCCCCCCchHHHHHHHHhCCCcc-CcC--CCcCEEEHHHHHH
Confidence 33 6999999999999998876799999999999999976532222221 223454332 222 3348999999999
Q ss_pred HHHHHHHHhccccchhhccCCcEEEeeCCCCccHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCCCC
Q 047227 232 AHICAERALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELTYRLLGPYGMKV 311 (485)
Q Consensus 232 a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~~t~~el~~~i~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (485)
+++.+++. +...| .|| ++++++|+.|+++.+.+..+. ..+|... ... ..
T Consensus 233 a~~~~~~~--------~~~~g-~~~-~~~~~~s~~e~~~~i~~~~~~----~~~~~~~----------------~~~-~~ 281 (322)
T 2p4h_X 233 AHIYLLEN--------SVPGG-RYN-CSPFIVPIEEMSQLLSAKYPE----YQILTVD----------------ELK-EI 281 (322)
T ss_dssp HHHHHHHS--------CCCCE-EEE-CCCEEEEHHHHHHHHHHHCTT----SCCCCTT----------------TTT-TC
T ss_pred HHHHHhhC--------cCCCC-CEE-EcCCCCCHHHHHHHHHHhCCC----CCCCCCc----------------ccc-CC
Confidence 99998762 12334 588 566889999999999887642 1122100 000 00
Q ss_pred CCCCHHHHHhhccceeeehhhHHhhcCCCCCCChHHHHHHHHHHHHHh
Q 047227 312 PQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSYSHL 359 (485)
Q Consensus 312 p~~~~~~~~~~~~~~~~d~~ka~~~lG~~p~~~l~e~i~~~~~~~~~~ 359 (485)
+. .....+|++|+ ++|||+|+++++|+++++++||++.
T Consensus 282 ~~---------~~~~~~d~~k~-~~lG~~p~~~~~~~l~~~~~~~~~~ 319 (322)
T 2p4h_X 282 KG---------ARLPDLNTKKL-VDAGFDFKYTIEDMFDDAIQCCKEK 319 (322)
T ss_dssp CC---------EECCEECCHHH-HHTTCCCCCCHHHHHHHHHHHHHHH
T ss_pred CC---------CcceecccHHH-HHhCCccCCCHHHHHHHHHHHHHhc
Confidence 10 02457899999 5599999999999999999999764
|
| >2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-37 Score=309.40 Aligned_cols=306 Identities=21% Similarity=0.214 Sum_probs=213.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhc-CCCeEEEEecCCCHHHHHHHhcCC
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALR-SGRAHYVSFDLRHKAQVLQALQGA 84 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~Dl~d~~~l~~~~~~~ 84 (485)
++|+||||||+||||+++++.|+++| ++|+++.|..... .....+..... ..+++++.+|++|++++.++++++
T Consensus 4 ~~~~vlVTGatGfIG~~l~~~L~~~G-~~V~~~~r~~~~~----~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~ 78 (337)
T 2c29_D 4 QSETVCVTGASGFIGSWLVMRLLERG-YTVRATVRDPTNV----KKVKHLLDLPKAETHLTLWKADLADEGSFDEAIKGC 78 (337)
T ss_dssp --CEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESCTTCH----HHHHHHHTSTTHHHHEEEEECCTTSTTTTHHHHTTC
T ss_pred CCCEEEEECCchHHHHHHHHHHHHCC-CEEEEEECCcchh----HHHHHHHhcccCCCeEEEEEcCCCCHHHHHHHHcCC
Confidence 46899999999999999999999999 5899888764311 00000000000 135889999999999999999999
Q ss_pred CEEEEcCCCCCC-CCch-hhhHHHHHHHHHHHHHHHHhcC-CCEEEEecCccccccCCCCcCCCCCCCCCCC-------C
Q 047227 85 EVVFHMAAPNSS-INNH-KLHHSVNVEGTKNVIDACAELK-VKRLIYTSSPSVVFDGVHGIINGNEALPYPP-------K 154 (485)
Q Consensus 85 d~Vih~aa~~~~-~~~~-~~~~~~nv~~t~~ll~a~~~~~-v~r~V~~SS~~vy~~~~~~~~~~~e~~~~~~-------~ 154 (485)
|+|||+|++... ..++ ...+++|+.|+.+++++|++.+ ++||||+||.++++.........+|+.+.+. .
T Consensus 79 d~Vih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~riV~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~ 158 (337)
T 2c29_D 79 TGVFHVATPMDFESKDPENEVIKPTIEGMLGIMKSCAAAKTVRRLVFTSSAGTVNIQEHQLPVYDESCWSDMEFCRAKKM 158 (337)
T ss_dssp SEEEECCCCCCSSCSSHHHHTHHHHHHHHHHHHHHHHHHSCCCEEEEECCGGGTSCSSSCCSEECTTCCCCHHHHHHHCC
T ss_pred CEEEEeccccCCCCCChHHHHHHHHHHHHHHHHHHHHhCCCccEEEEeeeHhhcccCCCCCcccCcccCCchhhhcccCC
Confidence 999999995432 2233 3588999999999999999988 8999999998855432222222344432111 2
Q ss_pred CCchHHHHHHHHHHHHHHHhCCCCceEEEEecCCcccCCCCCChHHHHHHH---HcCCCeEEecCCCceeecccHHHHHH
Q 047227 155 HNDFYSATKAEGEALVIKANGTNGLLTCCIRPSSIFGPGDRLLVPSLVAAA---RAGKSKFIIGDGNNVYDFTYVANVAH 231 (485)
Q Consensus 155 ~~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~---~~g~~~~~~g~g~~~~~~i~v~D~a~ 231 (485)
+.+.|+.+|..+|.+++.+.+.+|++++++||+++|||+....++..+... ..|... .++.+. ...|+|++|+|+
T Consensus 159 ~~~~Y~~sK~~~E~~~~~~~~~~gi~~~~lrp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~-~~~~~~-~~~~i~v~Dva~ 236 (337)
T 2c29_D 159 TAWMYFVSKTLAEQAAWKYAKENNIDFITIIPTLVVGPFIMSSMPPSLITALSPITGNEA-HYSIIR-QGQFVHLDDLCN 236 (337)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECEEESCCSCSSCCHHHHHHTHHHHTCGG-GHHHHT-EEEEEEHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHcCCcEEEEeCCceECCCCCCCCCchHHHHHHHHcCCCc-cccccC-CCCEEEHHHHHH
Confidence 455799999999999998876679999999999999998654332222221 334332 222222 345999999999
Q ss_pred HHHHHHHHhccccchhhccCCcEEEeeCCCCccHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCCCC
Q 047227 232 AHICAERALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELTYRLLGPYGMKV 311 (485)
Q Consensus 232 a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~~t~~el~~~i~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (485)
+++.+++. + ..++.|++++ +.+++.|+++.+.+.++. ..+|... . ..
T Consensus 237 a~~~~~~~--------~-~~~~~~~~~~-~~~s~~e~~~~i~~~~~~----~~~~~~~------------------~-~~ 283 (337)
T 2c29_D 237 AHIYLFEN--------P-KAEGRYICSS-HDCIILDLAKMLREKYPE----YNIPTEF------------------K-GV 283 (337)
T ss_dssp HHHHHHHC--------T-TCCEEEEECC-EEEEHHHHHHHHHHHCTT----SCCCSCC------------------T-TC
T ss_pred HHHHHhcC--------c-ccCceEEEeC-CCCCHHHHHHHHHHHCCC----ccCCCCC------------------C-cc
Confidence 99998762 1 2245686655 568999999999998742 1111100 0 00
Q ss_pred CCCCHHHHHhhccceeeehhhHHhhcCCCCCCChHHHHHHHHHHHHHhH
Q 047227 312 PQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSYSHLR 360 (485)
Q Consensus 312 p~~~~~~~~~~~~~~~~d~~ka~~~lG~~p~~~l~e~i~~~~~~~~~~~ 360 (485)
+ .......+|++|+ ++|||+|+++++|+++++++||++.+
T Consensus 284 ~--------~~~~~~~~d~~k~-~~lG~~p~~~l~e~l~~~~~~~~~~~ 323 (337)
T 2c29_D 284 D--------ENLKSVCFSSKKL-TDLGFEFKYSLEDMFTGAVDTCRAKG 323 (337)
T ss_dssp C--------TTCCCCEECCHHH-HHHTCCCCCCHHHHHHHHHHHHHHTT
T ss_pred c--------CCCccccccHHHH-HHcCCCcCCCHHHHHHHHHHHHHHcC
Confidence 0 0112456899999 67999999999999999999998753
|
| >2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-38 Score=314.78 Aligned_cols=305 Identities=22% Similarity=0.268 Sum_probs=209.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCCC
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGAE 85 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~d 85 (485)
++|+||||||+||||+++++.|+++| ++|+++.|........ . .+.......+++++.+|++|++++.++++++|
T Consensus 8 ~~~~vlVTGatGfIG~~l~~~Ll~~G-~~V~~~~r~~~~~~~~-~---~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D 82 (338)
T 2rh8_A 8 GKKTACVVGGTGFVASLLVKLLLQKG-YAVNTTVRDPDNQKKV-S---HLLELQELGDLKIFRADLTDELSFEAPIAGCD 82 (338)
T ss_dssp -CCEEEEECTTSHHHHHHHHHHHHTT-CEEEEEESCTTCTTTT-H---HHHHHGGGSCEEEEECCTTTSSSSHHHHTTCS
T ss_pred CCCEEEEECCchHHHHHHHHHHHHCC-CEEEEEEcCcchhhhH-H---HHHhcCCCCcEEEEecCCCChHHHHHHHcCCC
Confidence 35899999999999999999999999 5899887754321100 0 01111123578999999999999999999999
Q ss_pred EEEEcCCCCC-CCCch-hhhHHHHHHHHHHHHHHHHhcC-CCEEEEecCcccc-ccCCC-CcCCCCCCCCC------CCC
Q 047227 86 VVFHMAAPNS-SINNH-KLHHSVNVEGTKNVIDACAELK-VKRLIYTSSPSVV-FDGVH-GIINGNEALPY------PPK 154 (485)
Q Consensus 86 ~Vih~aa~~~-~~~~~-~~~~~~nv~~t~~ll~a~~~~~-v~r~V~~SS~~vy-~~~~~-~~~~~~e~~~~------~~~ 154 (485)
+|||+|+... ...++ ..++++|+.|+.+++++|++.+ ++||||+||.+++ +.... ...+.+|+.+. +..
T Consensus 83 ~Vih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~~v~r~V~~SS~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~ 162 (338)
T 2rh8_A 83 FVFHVATPVHFASEDPENDMIKPAIQGVVNVMKACTRAKSVKRVILTSSAAAVTINQLDGTGLVVDEKNWTDIEFLTSAK 162 (338)
T ss_dssp EEEEESSCCCC---------CHHHHHHHHHHHHHHHHCTTCCEEEEECCHHHHHHHHHTCSCCCCCTTTTTCC-------
T ss_pred EEEEeCCccCCCCCCcHHHHHHHHHHHHHHHHHHHHHcCCcCEEEEEecHHHeecCCcCCCCcccChhhccchhhccccC
Confidence 9999999542 22333 3488999999999999999986 9999999998744 32111 11133444321 112
Q ss_pred CC-chHHHHHHHHHHHHHHHhCCCCceEEEEecCCcccCCCCCChHHHHH---HHHcCCCeEEecCC------Cceeecc
Q 047227 155 HN-DFYSATKAEGEALVIKANGTNGLLTCCIRPSSIFGPGDRLLVPSLVA---AARAGKSKFIIGDG------NNVYDFT 224 (485)
Q Consensus 155 ~~-~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~~~~~~~~~---~~~~g~~~~~~g~g------~~~~~~i 224 (485)
|. ..|+.+|..+|++++.+.+.+|++++++||+++|||+....++..+. ....|+.. .+++. +..++|+
T Consensus 163 ~~~~~Y~~sK~~~E~~~~~~~~~~gi~~~~lrp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~i 241 (338)
T 2rh8_A 163 PPTWGYPASKTLAEKAAWKFAEENNIDLITVIPTLMAGSSLTSDVPSSIGLAMSLITGNEF-LINGMKGMQMLSGSVSIA 241 (338)
T ss_dssp CCCCCCTTSCCHHHHHHHHHHHHHTCCEEEEEECEEESCCSSSSCCHHHHHHHHHHHTCHH-HHHHHHHHHHHHSSEEEE
T ss_pred CccchHHHHHHHHHHHHHHHHHHcCCcEEEEeCCceECCCCCCCCCchHHHHHHHHcCCcc-ccccccccccccCcccEE
Confidence 22 26999999999999988766799999999999999986533222221 12344432 22211 1234899
Q ss_pred cHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCCCccHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHh
Q 047227 225 YVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELTYRLL 304 (485)
Q Consensus 225 ~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~~t~~el~~~i~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~ 304 (485)
|++|+|++++.+++. + ..++.||+++ +.+++.|+++.+.+..+.. .+|...
T Consensus 242 ~v~Dva~a~~~~~~~--------~-~~~~~~~~~~-~~~s~~e~~~~l~~~~~~~----~~~~~~--------------- 292 (338)
T 2rh8_A 242 HVEDVCRAHIFVAEK--------E-SASGRYICCA-ANTSVPELAKFLSKRYPQY----KVPTDF--------------- 292 (338)
T ss_dssp EHHHHHHHHHHHHHC--------T-TCCEEEEECS-EEECHHHHHHHHHHHCTTS----CCCCCC---------------
T ss_pred EHHHHHHHHHHHHcC--------C-CcCCcEEEec-CCCCHHHHHHHHHHhCCCC----CCCCCC---------------
Confidence 999999999988762 1 2245788876 4689999999999887521 111100
Q ss_pred CCCCCCCCCCCHHHHHhhccceeeehhhHHhhcCCCCCCChHHHHHHHHHHHHHh
Q 047227 305 GPYGMKVPQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSYSHL 359 (485)
Q Consensus 305 ~~~~~~~p~~~~~~~~~~~~~~~~d~~ka~~~lG~~p~~~l~e~i~~~~~~~~~~ 359 (485)
. ..+. .....+|++|+ ++|||+|+++++|+++++++||++.
T Consensus 293 ---~-~~~~---------~~~~~~d~~k~-~~lG~~p~~~l~~gl~~~~~~~~~~ 333 (338)
T 2rh8_A 293 ---G-DFPP---------KSKLIISSEKL-VKEGFSFKYGIEEIYDESVEYFKAK 333 (338)
T ss_dssp ---T-TSCS---------SCSCCCCCHHH-HHHTCCCSCCHHHHHHHHHHHHHHT
T ss_pred ---C-CCCc---------CcceeechHHH-HHhCCCCCCCHHHHHHHHHHHHHHc
Confidence 0 0010 01256799999 5599999999999999999999764
|
| >4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-36 Score=294.79 Aligned_cols=283 Identities=18% Similarity=0.211 Sum_probs=214.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCCCEE
Q 047227 8 RLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGAEVV 87 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~d~V 87 (485)
|||||||||||||++|++.|+++| ++|++++|.+.. . .+..| +...+.++++|+|
T Consensus 1 MkILVTGatGfIG~~L~~~L~~~G-~~V~~l~R~~~~-----------------~---~~~~~----~~~~~~l~~~d~v 55 (298)
T 4b4o_A 1 MRVLVGGGTGFIGTALTQLLNARG-HEVTLVSRKPGP-----------------G---RITWD----ELAASGLPSCDAA 55 (298)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSCCT-----------------T---EEEHH----HHHHHCCCSCSEE
T ss_pred CEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCCCc-----------------C---eeecc----hhhHhhccCCCEE
Confidence 789999999999999999999999 599999886431 0 12222 2334567899999
Q ss_pred EEcCCCC--C-----CCCchhhhHHHHHHHHHHHHHHHHhcCC--CEEEEecCccccccCCCCcCCCCCCCCCCCCCCch
Q 047227 88 FHMAAPN--S-----SINNHKLHHSVNVEGTKNVIDACAELKV--KRLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDF 158 (485)
Q Consensus 88 ih~aa~~--~-----~~~~~~~~~~~nv~~t~~ll~a~~~~~v--~r~V~~SS~~vy~~~~~~~~~~~e~~~~~~~~~~~ 158 (485)
||+|+.. . .......+++.|+.+|.++++++++.+. ++||++||.++|++...... +|+. |..+.+.
T Consensus 56 ihla~~~i~~~~~~~~~~~~~~~~~~~v~~t~~l~~~~~~~~~~~~~~i~~Ss~~vyg~~~~~~~--~E~~--p~~~~~~ 131 (298)
T 4b4o_A 56 VNLAGENILNPLRRWNETFQKEVLGSRLETTQLLAKAITKAPQPPKAWVLVTGVAYYQPSLTAEY--DEDS--PGGDFDF 131 (298)
T ss_dssp EECCCCCSSCTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHCSSCCSEEEEEEEGGGSCCCSSCCB--CTTC--CCSCSSH
T ss_pred EEeccCcccchhhhhhhhhhhhhhhHHHHHHHHHHHHHHHhCCCceEEEEEeeeeeecCCCCCcc--cccC--Cccccch
Confidence 9999821 1 1223456889999999999999999874 46999999999976544443 3433 3567778
Q ss_pred HHHHHHHHHHHHHHHhCCCCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCceeecccHHHHHHHHHHHHH
Q 047227 159 YSATKAEGEALVIKANGTNGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICAER 238 (485)
Q Consensus 159 Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~D~a~a~~~~~~ 238 (485)
|+..|...|... .....+++++++||+.||||++ ..+..+......+.. ..+|+++++++|||++|+|++++.+++
T Consensus 132 ~~~~~~~~e~~~--~~~~~~~~~~~~r~~~v~g~~~-~~~~~~~~~~~~~~~-~~~g~g~~~~~~ihv~Dva~a~~~~~~ 207 (298)
T 4b4o_A 132 FSNLVTKWEAAA--RLPGDSTRQVVVRSGVVLGRGG-GAMGHMLLPFRLGLG-GPIGSGHQFFPWIHIGDLAGILTHALE 207 (298)
T ss_dssp HHHHHHHHHHHH--CCSSSSSEEEEEEECEEECTTS-HHHHHHHHHHHTTCC-CCBTTSCSBCCEEEHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH--HhhccCCceeeeeeeeEEcCCC-CchhHHHHHHhcCCc-ceecccCceeecCcHHHHHHHHHHHHh
Confidence 888888877654 3345789999999999999975 345666666666654 467999999999999999999999987
Q ss_pred HhccccchhhccCCcEEEeeCCCCccHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCCCCCCCCHHH
Q 047227 239 ALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELTYRLLGPYGMKVPQLTPSR 318 (485)
Q Consensus 239 ~~~~~~~~~~~~~g~~ynv~~~~~~t~~el~~~i~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 318 (485)
. + ..+++||+++++++|+.|+++.+++.+|++. .+++|.+++..+. + ...
T Consensus 208 ~--------~-~~~g~yn~~~~~~~t~~e~~~~ia~~lgrp~-~~pvP~~~~~~~~----------g----------~~~ 257 (298)
T 4b4o_A 208 A--------N-HVHGVLNGVAPSSATNAEFAQTFGAALGRRA-FIPLPSAVVQAVF----------G----------RQR 257 (298)
T ss_dssp C--------T-TCCEEEEESCSCCCBHHHHHHHHHHHHTCCC-CCCBCHHHHHHHH----------C----------HHH
T ss_pred C--------C-CCCCeEEEECCCccCHHHHHHHHHHHhCcCC-cccCCHHHHHHHh----------c----------chh
Confidence 3 2 2356999999999999999999999999865 4678887654321 0 011
Q ss_pred HHhhccceeeehhhHHhhcCCCCCC-ChHHHHHHHHH
Q 047227 319 VRLLSCSRTFDCSKAKDLLGYMPIV-PLEEGIKRTVD 354 (485)
Q Consensus 319 ~~~~~~~~~~d~~ka~~~lG~~p~~-~l~e~i~~~~~ 354 (485)
...+..+...+++|+++ +||++++ +++++++++++
T Consensus 258 ~~~~l~~~rv~~~kl~~-~Gf~f~yp~l~~al~~l~~ 293 (298)
T 4b4o_A 258 AIMLLEGQKVIPRRTLA-TGYQYSFPELGAALKEIAE 293 (298)
T ss_dssp HHHHHCCCCBCCHHHHH-TTCCCSCCSHHHHHHHHHH
T ss_pred HHHhhCCCEEcHHHHHH-CCCCCCCCCHHHHHHHHHH
Confidence 22223345568889876 8999988 59999999887
|
| >4f6c_A AUSA reductase domain protein; thioester reductase, oxidoreductase; 2.81A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-35 Score=303.48 Aligned_cols=325 Identities=15% Similarity=0.101 Sum_probs=228.9
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhh-------hhhcCCCeEEEEecCCCHHHH
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILG-------EALRSGRAHYVSFDLRHKAQV 77 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~-------~~~~~~~v~~~~~Dl~d~~~l 77 (485)
.++|+|||||||||||+++++.|+++| ++|++++|..........-...+. ......+++++.+|++|++.+
T Consensus 67 ~~~~~vlVTGatG~iG~~l~~~L~~~g-~~V~~~~R~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l 145 (427)
T 4f6c_A 67 RPLGNTLLTGATGFLGAYLIEALQGYS-HRIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVGDFECMDDV 145 (427)
T ss_dssp CCCEEEEEECTTSHHHHHHHHHHTTTE-EEEEEEEECSSHHHHHHHHHHHHHHHSCHHHHHHHHTTEEEEEECC---CCC
T ss_pred CCCCEEEEecCCcHHHHHHHHHHHcCC-CEEEEEECCCChHHHHHHHHHHHHHhccccccccccCceEEEeCCCCCcccC
Confidence 456899999999999999999999999 699999987642110000000010 011236899999999998877
Q ss_pred HHHhcCCCEEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCcccccc---CCCCcCCCCCCCCC-CC
Q 047227 78 LQALQGAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVVFD---GVHGIINGNEALPY-PP 153 (485)
Q Consensus 78 ~~~~~~~d~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy~~---~~~~~~~~~e~~~~-~~ 153 (485)
. .+.++|+|||+|+......++...+++|+.++.+++++|++ ++++|||+||.++ |. ......+.+|+.+. +.
T Consensus 146 ~-~~~~~d~Vih~A~~~~~~~~~~~~~~~Nv~g~~~l~~aa~~-~~~~~v~~SS~~~-G~~~~~~~~~~~~~E~~~~~~~ 222 (427)
T 4f6c_A 146 V-LPENMDTIIHAGARTDHFGDDDEFEKVNVQGTVDVIRLAQQ-HHARLIYVSTISV-GTYFDIDTEDVTFSEADVYKGQ 222 (427)
T ss_dssp C-CSSCCSEEEECCCCC-------CHHHHHHHHHHHHHHHHHH-TTCEEEEEEEGGG-GSEECSSCSCCEECTTCSCSSC
T ss_pred C-CcCCCCEEEECCcccCCCCCHHHHHHHHHHHHHHHHHHHHh-cCCcEEEECchHh-CCCccCCCCCccccccccccCC
Confidence 7 77789999999997666677888999999999999999999 8899999999998 42 11222333444432 24
Q ss_pred CCCchHHHHHHHHHHHHHHHhCCCCceEEEEecCCcccCCCCCC---------hHHHHHHHHcCCCeEEecCCCceeecc
Q 047227 154 KHNDFYSATKAEGEALVIKANGTNGLLTCCIRPSSIFGPGDRLL---------VPSLVAAARAGKSKFIIGDGNNVYDFT 224 (485)
Q Consensus 154 ~~~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~~~---------~~~~~~~~~~g~~~~~~g~g~~~~~~i 224 (485)
.+.+.|+.+|..+|.+++.+.+ .|++++++||++||||+.... +..++..+..++.+.. ++++..++|+
T Consensus 223 ~~~~~Y~~sK~~~E~~~~~~~~-~g~~~~ivRpg~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v 300 (427)
T 4f6c_A 223 LLTSPYTRSKFYSELKVLEAVN-NGLDGRIVRVGNLTSPYNGRWHMRNIKTNRFSMVMNDLLQLDCIGV-SMAEMPVDFS 300 (427)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHH-TTCCEEEEEECCEESCSSSCCCCTTGGGCHHHHHHHHHHHSSEEEH-HHHTCEECCE
T ss_pred CCCCchHHHHHHHHHHHHHHHH-cCCCEEEEeCCeeecCCCCCccccCcchHHHHHHHHHHHhcCCCCC-ccccceEEEe
Confidence 5889999999999999999864 689999999999999986543 6677777777776544 4567899999
Q ss_pred cHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCCCccHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHh
Q 047227 225 YVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELTYRLL 304 (485)
Q Consensus 225 ~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~~t~~el~~~i~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~ 304 (485)
|++|+|++++.++.. +. .+++||+++++++++.|+++.+.+ +| .+.+..+.|......
T Consensus 301 ~v~DvA~ai~~~~~~--------~~-~g~~~~l~~~~~~s~~el~~~i~~-~g--~~~~~~~~~~~~l~~---------- 358 (427)
T 4f6c_A 301 FVDTTARQIVALAQV--------NT-PQIIYHVLSPNKMPVKSLLECVKR-KE--IELVSDESFNEILQK---------- 358 (427)
T ss_dssp EHHHHHHHHHHHTTS--------CC-CCSEEEESCSCCEEHHHHHHHHHS-SC--CEEECHHHHHHHHHH----------
T ss_pred eHHHHHHHHHHHHcC--------CC-CCCEEEecCCCCCcHHHHHHHHHH-cC--CcccCHHHHHHHHHh----------
Confidence 999999999988652 22 689999999999999999999998 66 333333333221111
Q ss_pred CCCCCCCCCCCHHH-HHhhccceeeehhhHH---hhcCCCCCCChHHHHHHHHHHHHHhHh
Q 047227 305 GPYGMKVPQLTPSR-VRLLSCSRTFDCSKAK---DLLGYMPIVPLEEGIKRTVDSYSHLRA 361 (485)
Q Consensus 305 ~~~~~~~p~~~~~~-~~~~~~~~~~d~~ka~---~~lG~~p~~~l~e~i~~~~~~~~~~~~ 361 (485)
. ..+.+.+.. .........+|+++.. +.+|+.+....++.++++++++.+...
T Consensus 359 -~---~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~G~~~~~~~~~~l~~~~~~l~~~~~ 415 (427)
T 4f6c_A 359 -Q---DMYETIGLTSVDREQQLAMIDTTLTLKIMNHISEKWPTITNNWLYHWAQYIKTIFN 415 (427)
T ss_dssp -T---TCHHHHHHHHHHHTSEECEECCHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHC
T ss_pred -c---CchhhhhhhhccccCCceeccHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHh
Confidence 0 000000000 1112234567888877 456998775667799999999988654
|
| >2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-34 Score=279.09 Aligned_cols=279 Identities=14% Similarity=0.124 Sum_probs=211.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHhc--CCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCCC
Q 047227 8 RLCVVTGGRGFAARHLVEMLIRY--DMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGAE 85 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~~--G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~d 85 (485)
|+|||||||||||+++++.|+++ | ++|++++|..... ..+...+++++.+|++|++++.++++++|
T Consensus 1 ~~ilVtGatG~iG~~l~~~L~~~~~g-~~V~~~~r~~~~~-----------~~l~~~~~~~~~~D~~d~~~l~~~~~~~d 68 (287)
T 2jl1_A 1 FSIAVTGATGQLGGLVIQHLLKKVPA-SQIIAIVRNVEKA-----------STLADQGVEVRHGDYNQPESLQKAFAGVS 68 (287)
T ss_dssp CCEEETTTTSHHHHHHHHHHTTTSCG-GGEEEEESCTTTT-----------HHHHHTTCEEEECCTTCHHHHHHHTTTCS
T ss_pred CeEEEEcCCchHHHHHHHHHHHhCCC-CeEEEEEcCHHHH-----------hHHhhcCCeEEEeccCCHHHHHHHHhcCC
Confidence 57999999999999999999998 8 6999999864311 11123578999999999999999999999
Q ss_pred EEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCccccccCCCCcCCCCCCCCCCCCCCchHHHHHHH
Q 047227 86 VVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDFYSATKAE 165 (485)
Q Consensus 86 ~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy~~~~~~~~~~~e~~~~~~~~~~~Y~~sK~~ 165 (485)
+|||+|+... . .++|+.++.+++++|++.+++||||+||.++|. ...+|+.+|..
T Consensus 69 ~vi~~a~~~~--~-----~~~n~~~~~~l~~a~~~~~~~~~v~~Ss~~~~~------------------~~~~y~~~K~~ 123 (287)
T 2jl1_A 69 KLLFISGPHY--D-----NTLLIVQHANVVKAARDAGVKHIAYTGYAFAEE------------------SIIPLAHVHLA 123 (287)
T ss_dssp EEEECCCCCS--C-----HHHHHHHHHHHHHHHHHTTCSEEEEEEETTGGG------------------CCSTHHHHHHH
T ss_pred EEEEcCCCCc--C-----chHHHHHHHHHHHHHHHcCCCEEEEECCCCCCC------------------CCCchHHHHHH
Confidence 9999998521 1 167999999999999999999999999988752 01379999999
Q ss_pred HHHHHHHHhCCCCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCceeecccHHHHHHHHHHHHHHhccccc
Q 047227 166 GEALVIKANGTNGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICAERALASEVT 245 (485)
Q Consensus 166 ~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~D~a~a~~~~~~~~~~~~~ 245 (485)
+|++++. .+++++++||+.++|+.....+. .....+. . ..+.+++.++|+|++|+|++++.+++.
T Consensus 124 ~E~~~~~----~~~~~~ilrp~~~~~~~~~~~~~---~~~~~~~-~-~~~~~~~~~~~i~~~Dva~~~~~~~~~------ 188 (287)
T 2jl1_A 124 TEYAIRT----TNIPYTFLRNALYTDFFVNEGLR---ASTESGA-I-VTNAGSGIVNSVTRNELALAAATVLTE------ 188 (287)
T ss_dssp HHHHHHH----TTCCEEEEEECCBHHHHSSGGGH---HHHHHTE-E-EESCTTCCBCCBCHHHHHHHHHHHHTS------
T ss_pred HHHHHHH----cCCCeEEEECCEeccccchhhHH---HHhhCCc-e-eccCCCCccCccCHHHHHHHHHHHhcC------
Confidence 9999975 68999999999988865222222 2233443 2 355677889999999999999998762
Q ss_pred hhhccCCcEEEeeCCCCccHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCCCCCCCCH----HHHH-
Q 047227 246 VAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELTYRLLGPYGMKVPQLTP----SRVR- 320 (485)
Q Consensus 246 ~~~~~~g~~ynv~~~~~~t~~el~~~i~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~----~~~~- 320 (485)
+...|++||+++++++|+.|+++.+.+.+|.+.+...+|.+....... .. ..|.... ....
T Consensus 189 --~~~~g~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~-------~~-----~~~~~~~~~~~~~~~~ 254 (287)
T 2jl1_A 189 --EGHENKTYNLVSNQPWTFDELAQILSEVSGKKVVHQPVSFEEEKNFLV-------NA-----GVPEPFTEITAAIYDA 254 (287)
T ss_dssp --SSCTTEEEEECCSSCBCHHHHHHHHHHHHSSCCEEEECCHHHHHHHHH-------HT-----TCCHHHHHHHHHHHHH
T ss_pred --CCCCCcEEEecCCCcCCHHHHHHHHHHHHCCcceEEeCCHHHHHHHHH-------hC-----CCCHHHHHHHHHHHHH
Confidence 224678999999999999999999999999988777788754322110 00 0110000 0001
Q ss_pred hhccceeeehhhHHhhcCCCCCCChHHHHHHHHH
Q 047227 321 LLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVD 354 (485)
Q Consensus 321 ~~~~~~~~d~~ka~~~lG~~p~~~l~e~i~~~~~ 354 (485)
.......+|++|+++.|| |.++++|+++++++
T Consensus 255 ~~~~~~~~~~~~~~~~lG--~~~~l~e~l~~~~~ 286 (287)
T 2jl1_A 255 ISKGEASKTSDDLQKLIG--SLTPLKETVKQALK 286 (287)
T ss_dssp HHTTTTCCCCSHHHHHHS--SCCCHHHHHHHHHT
T ss_pred HhCCCCcCCchHHHHHhC--CCCCHHHHHHHHhc
Confidence 111345678999999999 66799999999875
|
| >4f6l_B AUSA reductase domain protein; thioester reductase, oxidoreductase; 3.86A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-35 Score=307.11 Aligned_cols=325 Identities=16% Similarity=0.121 Sum_probs=229.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhh-------hhhcCCCeEEEEecCCCHHHHH
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILG-------EALRSGRAHYVSFDLRHKAQVL 78 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~-------~~~~~~~v~~~~~Dl~d~~~l~ 78 (485)
++|+|||||||||||+++++.|+++| ++|++++|..........-...+. ......+++++.+|+.|++.+.
T Consensus 149 ~~~~VLVTGatG~iG~~l~~~L~~~g-~~V~~l~R~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~ 227 (508)
T 4f6l_B 149 PLGNTLLTGATGFLGAYLIEALQGYS-HRIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVGDFECMDDVV 227 (508)
T ss_dssp CCEEEEESCTTSHHHHHHHHHTBTTE-EEEEEEEESSSHHHHHHHHHHHHHHHSCHHHHHHHSTTEEEEEEBTTBCSSCC
T ss_pred CCCeEEEECCccchHHHHHHHHHhcC-CEEEEEECCCChHHHHHHHHHHHHHhcccccchhccCceEEEecCCcccccCC
Confidence 46899999999999999999999889 699999987652110000000000 1123578999999999977777
Q ss_pred HHhcCCCEEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCccc--cccCCCCcCCCCCCCCC-CCCC
Q 047227 79 QALQGAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSV--VFDGVHGIINGNEALPY-PPKH 155 (485)
Q Consensus 79 ~~~~~~d~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~v--y~~~~~~~~~~~e~~~~-~~~~ 155 (485)
++.++|+|||+|+......++..++++|+.++.+++++|++ ++++|||+||.++ |........+.+|+.+. +..+
T Consensus 228 -~~~~~D~Vih~Aa~~~~~~~~~~~~~~Nv~gt~~ll~~a~~-~~~~~v~iSS~~vG~~~~~~~~~~~~~E~~~~~~~~~ 305 (508)
T 4f6l_B 228 -LPENMDTIIHAGARTDHFGDDDEFEKVNVQGTVDVIRLAQQ-HHARLIYVSTISVGTYFDIDTEDVTFSEADVYKGQLL 305 (508)
T ss_dssp -CSSCCSEEEECCCC--------CCHHHHHHHHHHHHHHHHT-TTCEEEEEEESCTTSEECTTCSCCEECTTCSCSSBCC
T ss_pred -CccCCCEEEECCceecCCCCHHHHhhhHHHHHHHHHHHHHh-CCCcEEEeCChhhccCCccCCcCcccccccccccccC
Confidence 77789999999996666667888999999999999999999 7789999999999 32222222333444332 2347
Q ss_pred CchHHHHHHHHHHHHHHHhCCCCceEEEEecCCcccCCCCCC---------hHHHHHHHHcCCCeEEecCCCceeecccH
Q 047227 156 NDFYSATKAEGEALVIKANGTNGLLTCCIRPSSIFGPGDRLL---------VPSLVAAARAGKSKFIIGDGNNVYDFTYV 226 (485)
Q Consensus 156 ~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~~~---------~~~~~~~~~~g~~~~~~g~g~~~~~~i~v 226 (485)
.+.|+.+|..+|++++.+.+ .|++++++||++|||++.... +..++.....++.+.. +++++.++|+|+
T Consensus 306 ~~~Y~~sK~~~E~~~~~~~~-~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~g~~~~~~v~v 383 (508)
T 4f6l_B 306 TSPYTRSKFYSELKVLEAVN-NGLDGRIVRVGNLTSPYNGRWHMRNIKTNRFSMVMNDLLQLDCIGV-SMAEMPVDFSFV 383 (508)
T ss_dssp CSHHHHHHHHHHHHHHHHHH-TTCEEEEEEECCEESCSSSCCCCTTCTTCHHHHHHHHHTTCSEEET-TGGGSEEECEEH
T ss_pred CCcHHHHHHHHHHHHHHHHH-cCCCEEEEecceeccCCCCCcccCCcchHHHHHHHHHHHHcCCCCC-CccCceEEEEcH
Confidence 89999999999999999864 699999999999999976543 6677777777665443 456889999999
Q ss_pred HHHHHHHHHHHHHhccccchhhccCCcEEEeeCCCCccHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhCC
Q 047227 227 ANVAHAHICAERALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELTYRLLGP 306 (485)
Q Consensus 227 ~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~~t~~el~~~i~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 306 (485)
+|+|++++.++.. +. .+++||+++++++++.|+++.+.+.. .+.+..+.|... ....
T Consensus 384 ~DvA~ai~~~~~~--------~~-~~~~~nl~~~~~~s~~el~~~i~~~~---~~~~~~~~w~~~-----------l~~~ 440 (508)
T 4f6l_B 384 DTTARQIVALAQV--------NT-PQIIYHVLSPNKMPVKSLLECVKRKE---IELVSDESFNEI-----------LQKQ 440 (508)
T ss_dssp HHHHHHHHHHTTB--------CC-SCSEEEESCSCEEEHHHHHHHHHSSC---CEEECHHHHHHH-----------HHTT
T ss_pred HHHHHHHHHHHhC--------CC-CCCEEEeCCCCCCCHHHHHHHHHHcC---CcccCHHHHHHH-----------HHhc
Confidence 9999999998652 22 68899999999999999999998764 333333333221 1110
Q ss_pred CCCCCCCCCHHH-HHhhccceeeehhhHH---hhcCCCCCCChHHHHHHHHHHHHHhHh
Q 047227 307 YGMKVPQLTPSR-VRLLSCSRTFDCSKAK---DLLGYMPIVPLEEGIKRTVDSYSHLRA 361 (485)
Q Consensus 307 ~~~~~p~~~~~~-~~~~~~~~~~d~~ka~---~~lG~~p~~~l~e~i~~~~~~~~~~~~ 361 (485)
..+.+.... .........+|+++.. +.+|+.+....++.++++++++.+..+
T Consensus 441 ---~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~G~~~~~~~~~~l~~~~~~~~~~~~ 496 (508)
T 4f6l_B 441 ---DMYETIGLTSVDREQQLAMIDTTLTLKIMNHISEKWPTITNNWLYHWAQYIKTIFN 496 (508)
T ss_dssp ---CCHHHHHHHHTGGGSEECEECCHHHHHHHHHHSCCCCCCCHHHHHHHHHHHHHHHC
T ss_pred ---CCccchhcccccccCcceecchHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 011000000 0112234567888766 446998876778899999999988654
|
| >2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-34 Score=277.54 Aligned_cols=279 Identities=16% Similarity=0.118 Sum_probs=204.7
Q ss_pred EEEEEcCCCchHHHHHHHHHhc--CCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCCCE
Q 047227 9 LCVVTGGRGFAARHLVEMLIRY--DMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGAEV 86 (485)
Q Consensus 9 ~iLVtGgtG~iG~~l~~~Ll~~--G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~d~ 86 (485)
+|||||||||||+++++.|+++ | ++|++++|.+... ..+...+++++.+|++|++++.++++++|+
T Consensus 1 ~ilVtGatG~iG~~l~~~L~~~~~g-~~V~~~~r~~~~~-----------~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~ 68 (286)
T 2zcu_A 1 MIAITGATGQLGHYVIESLMKTVPA-SQIVAIVRNPAKA-----------QALAAQGITVRQADYGDEAALTSALQGVEK 68 (286)
T ss_dssp CEEEESTTSHHHHHHHHHHTTTSCG-GGEEEEESCTTTC-----------HHHHHTTCEEEECCTTCHHHHHHHTTTCSE
T ss_pred CEEEEcCCchHHHHHHHHHHhhCCC-ceEEEEEcChHhh-----------hhhhcCCCeEEEcCCCCHHHHHHHHhCCCE
Confidence 4899999999999999999998 8 6999999865311 011234789999999999999999999999
Q ss_pred EEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCccccccCCCCcCCCCCCCCCCCCCCchHHHHHHHH
Q 047227 87 VFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDFYSATKAEG 166 (485)
Q Consensus 87 Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy~~~~~~~~~~~e~~~~~~~~~~~Y~~sK~~~ 166 (485)
|||+|+... +.|+.++.+++++|++.+++||||+||.++|. ...+|+.+|..+
T Consensus 69 vi~~a~~~~---------~~~~~~~~~l~~a~~~~~~~~~v~~Ss~~~~~------------------~~~~y~~sK~~~ 121 (286)
T 2zcu_A 69 LLLISSSEV---------GQRAPQHRNVINAAKAAGVKFIAYTSLLHADT------------------SPLGLADEHIET 121 (286)
T ss_dssp EEECC-----------------CHHHHHHHHHHHHTCCEEEEEEETTTTT------------------CCSTTHHHHHHH
T ss_pred EEEeCCCCc---------hHHHHHHHHHHHHHHHcCCCEEEEECCCCCCC------------------CcchhHHHHHHH
Confidence 999998421 25889999999999999999999999988761 114799999999
Q ss_pred HHHHHHHhCCCCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCceeecccHHHHHHHHHHHHHHhccccch
Q 047227 167 EALVIKANGTNGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICAERALASEVTV 246 (485)
Q Consensus 167 E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~ 246 (485)
|++++. .+++++++||+.++++.. .. +......+ .+ ..+++++.++|+|++|+|++++.+++.
T Consensus 122 e~~~~~----~~~~~~ilrp~~~~~~~~-~~---~~~~~~~~-~~-~~~~~~~~~~~i~~~Dva~~~~~~~~~------- 184 (286)
T 2zcu_A 122 EKMLAD----SGIVYTLLRNGWYSENYL-AS---APAALEHG-VF-IGAAGDGKIASATRADYAAAAARVISE------- 184 (286)
T ss_dssp HHHHHH----HCSEEEEEEECCBHHHHH-TT---HHHHHHHT-EE-EESCTTCCBCCBCHHHHHHHHHHHHHS-------
T ss_pred HHHHHH----cCCCeEEEeChHHhhhhH-HH---hHHhhcCC-ce-eccCCCCccccccHHHHHHHHHHHhcC-------
Confidence 999976 589999999987666532 12 22222333 33 366778899999999999999998772
Q ss_pred hhccCCcEEEeeCCCCccHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCCCCCCCC----HHHHH-h
Q 047227 247 AEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELTYRLLGPYGMKVPQLT----PSRVR-L 321 (485)
Q Consensus 247 ~~~~~g~~ynv~~~~~~t~~el~~~i~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~----~~~~~-~ 321 (485)
+...|++||+++++++|+.|+++.+.+.+|.+.+...+|.+....... .. ..|... ..... .
T Consensus 185 -~~~~g~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~----------~~--~~~~~~~~~~~~~~~~~ 251 (286)
T 2zcu_A 185 -AGHEGKVYELAGDSAWTLTQLAAELTKQSGKQVTYQNLSEADFAAALK----------SV--GLPDGLADMLADSDVGA 251 (286)
T ss_dssp -SSCTTCEEEECCSSCBCHHHHHHHHHHHHSSCCEEEECCHHHHHHHHT----------TS--SCCHHHHHHHHHHHHHH
T ss_pred -CCCCCceEEEeCCCcCCHHHHHHHHHHHHCCCCceeeCCHHHHHHHHH----------Hc--CCCHHHHHHHHHHHHHH
Confidence 224678999999999999999999999999988777788764322110 00 011000 00011 1
Q ss_pred hccceeeehhhHHhhcCCCCCCChHHHHHHHHHHHH
Q 047227 322 LSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSYS 357 (485)
Q Consensus 322 ~~~~~~~d~~ka~~~lG~~p~~~l~e~i~~~~~~~~ 357 (485)
......+|++|+++.|||. .++++|+++++++||+
T Consensus 252 ~~~~~~~~~~~~~~~lg~~-~~~~~e~l~~~~~~~~ 286 (286)
T 2zcu_A 252 SKGGLFDDSKTLSKLIGHP-TTTLAESVSHLFNVNN 286 (286)
T ss_dssp HTTTTCCCCCHHHHHHTSC-CCCHHHHHHGGGC---
T ss_pred hCCCCccCchHHHHHhCcC-CCCHHHHHHHHHhhcC
Confidence 1123456899999999975 4699999999999874
|
| >3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-35 Score=306.22 Aligned_cols=292 Identities=15% Similarity=0.126 Sum_probs=212.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCCCE
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGAEV 86 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~d~ 86 (485)
+|+|||||||||||+++++.|+++| ++|++++|.... .+.+.+|+.|. +.++++++|+
T Consensus 147 ~m~VLVTGatG~IG~~l~~~L~~~G-~~V~~l~R~~~~-------------------~~~v~~d~~~~--~~~~l~~~D~ 204 (516)
T 3oh8_A 147 PLTVAITGSRGLVGRALTAQLQTGG-HEVIQLVRKEPK-------------------PGKRFWDPLNP--ASDLLDGADV 204 (516)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESSSCC-------------------TTCEECCTTSC--CTTTTTTCSE
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCCCC-------------------ccceeecccch--hHHhcCCCCE
Confidence 7899999999999999999999999 599999987542 12266787753 4667789999
Q ss_pred EEEcCCCC----CCCCchhhhHHHHHHHHHHHHHH-HHhcCCCEEEEecCccccccCCCCcCCCCCCCCCCCCCCchHHH
Q 047227 87 VFHMAAPN----SSINNHKLHHSVNVEGTKNVIDA-CAELKVKRLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDFYSA 161 (485)
Q Consensus 87 Vih~aa~~----~~~~~~~~~~~~nv~~t~~ll~a-~~~~~v~r~V~~SS~~vy~~~~~~~~~~~e~~~~~~~~~~~Y~~ 161 (485)
|||+|+.. ....++..++++|+.++.+++++ |++.++++|||+||.++|+.. ....+.+|+.+ .+.+.|+.
T Consensus 205 Vih~A~~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~a~~~~~~r~V~~SS~~vyg~~-~~~~~~~E~~~---~~~~~y~~ 280 (516)
T 3oh8_A 205 LVHLAGEPIFGRFNDSHKEAIRESRVLPTKFLAELVAESTQCTTMISASAVGFYGHD-RGDEILTEESE---SGDDFLAE 280 (516)
T ss_dssp EEECCCC-----CCGGGHHHHHHHTHHHHHHHHHHHHHCSSCCEEEEEEEGGGGCSE-EEEEEECTTSC---CCSSHHHH
T ss_pred EEECCCCccccccchhHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEeCcceEecCC-CCCCccCCCCC---CCcChHHH
Confidence 99999943 23456677899999999999999 677789999999999999721 12223355544 27789999
Q ss_pred HHHHHHHHHHHHhCCCCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCceeecccHHHHHHHHHHHHHHhc
Q 047227 162 TKAEGEALVIKANGTNGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICAERALA 241 (485)
Q Consensus 162 sK~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~D~a~a~~~~~~~~~ 241 (485)
+|..+|.++..+. ..|++++++||+++|||+. ..++.+...+..|.. ..+|++++.++|+|++|+|++++.+++.
T Consensus 281 ~~~~~E~~~~~~~-~~gi~~~ilRp~~v~Gp~~-~~~~~~~~~~~~g~~-~~~g~g~~~~~~i~v~Dva~ai~~~l~~-- 355 (516)
T 3oh8_A 281 VCRDWEHATAPAS-DAGKRVAFIRTGVALSGRG-GMLPLLKTLFSTGLG-GKFGDGTSWFSWIAIDDLTDIYYRAIVD-- 355 (516)
T ss_dssp HHHHHHHTTHHHH-HTTCEEEEEEECEEEBTTB-SHHHHHHHTTC---C-CCCTTSCCEECEEEHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHH-hCCCCEEEEEeeEEECCCC-ChHHHHHHHHHhCCC-cccCCCCceEceEeHHHHHHHHHHHHhC--
Confidence 9999998876543 4699999999999999984 456666666655554 4678999999999999999999999873
Q ss_pred cccchhhccCCcEEEeeCCCCccHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCCCCCCCCHHHHHh
Q 047227 242 SEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELTYRLLGPYGMKVPQLTPSRVRL 321 (485)
Q Consensus 242 ~~~~~~~~~~g~~ynv~~~~~~t~~el~~~i~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 321 (485)
+ ..+++||+++++++|+.|+++.+.+.+|.+. .+.+|.+..... .+ .. .....
T Consensus 356 ------~-~~~g~~ni~~~~~~s~~el~~~i~~~~g~~~-~~~~p~~~~~~~----------~g----~~-----~~~~~ 408 (516)
T 3oh8_A 356 ------A-QISGPINAVAPNPVSNADMTKILATSMHRPA-FIQIPSLGPKIL----------LG----SQ-----GAEEL 408 (516)
T ss_dssp ------T-TCCEEEEESCSCCEEHHHHHHHTTC------------------------------------C-----CGGGG
T ss_pred ------c-ccCCcEEEECCCCCCHHHHHHHHHHHhCCCC-CCCCCHHHHHHH----------hC----Cc-----hhHHH
Confidence 2 2356899999999999999999999999765 444554421100 00 00 00122
Q ss_pred hccceeeehhhHHhhcCCCCCCC-hHHHHHHHHHHHH
Q 047227 322 LSCSRTFDCSKAKDLLGYMPIVP-LEEGIKRTVDSYS 357 (485)
Q Consensus 322 ~~~~~~~d~~ka~~~lG~~p~~~-l~e~i~~~~~~~~ 357 (485)
......++++|+++ +||+|+++ +++++++++++..
T Consensus 409 ~~~~~~~~~~kl~~-lG~~~~~~~l~e~l~~~l~~~~ 444 (516)
T 3oh8_A 409 ALASQRTAPAALEN-LSHTFRYTDIGAAIAHELGYEQ 444 (516)
T ss_dssp GGCEEEECCHHHHH-TTCCCSCSSHHHHHHHHHTCCC
T ss_pred hhcCCeechHHHHH-CCCCCCCCCHHHHHHHHhCccc
Confidence 33456678999985 89999997 9999999998653
|
| >2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha, beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-34 Score=275.15 Aligned_cols=266 Identities=18% Similarity=0.173 Sum_probs=209.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcC--CC
Q 047227 8 RLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQG--AE 85 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~--~d 85 (485)
|+||||||+||||+++++.|++ | ++|++++|.... . ++ +.+|++|++++.+++++ +|
T Consensus 1 m~ilVtGatG~iG~~l~~~L~~-g-~~V~~~~r~~~~-----------~-----~~---~~~Dl~~~~~~~~~~~~~~~d 59 (273)
T 2ggs_A 1 MRTLITGASGQLGIELSRLLSE-R-HEVIKVYNSSEI-----------Q-----GG---YKLDLTDFPRLEDFIIKKRPD 59 (273)
T ss_dssp CCEEEETTTSHHHHHHHHHHTT-T-SCEEEEESSSCC-----------T-----TC---EECCTTSHHHHHHHHHHHCCS
T ss_pred CEEEEECCCChhHHHHHHHHhc-C-CeEEEecCCCcC-----------C-----CC---ceeccCCHHHHHHHHHhcCCC
Confidence 5799999999999999999994 8 699999887531 0 12 78999999999999986 99
Q ss_pred EEEEcCCCCCC---CCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCccccccCCCCcCCCCCCCCCCCCCCchHHHH
Q 047227 86 VVFHMAAPNSS---INNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDFYSAT 162 (485)
Q Consensus 86 ~Vih~aa~~~~---~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy~~~~~~~~~~~e~~~~~~~~~~~Y~~s 162 (485)
+|||+|+.... ..++...+++|+.++.+++++|++.++ ||||+||.++|+.... +.+|+.+ ..|.+.|+.+
T Consensus 60 ~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~iv~~SS~~~~~~~~~---~~~e~~~--~~~~~~Y~~s 133 (273)
T 2ggs_A 60 VIINAAAMTDVDKCEIEKEKAYKINAEAVRHIVRAGKVIDS-YIVHISTDYVFDGEKG---NYKEEDI--PNPINYYGLS 133 (273)
T ss_dssp EEEECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTC-EEEEEEEGGGSCSSSC---SBCTTSC--CCCSSHHHHH
T ss_pred EEEECCcccChhhhhhCHHHHHHHhHHHHHHHHHHHHHhCC-eEEEEecceeEcCCCC---CcCCCCC--CCCCCHHHHH
Confidence 99999995432 346788999999999999999999887 9999999999964322 3344433 4678899999
Q ss_pred HHHHHHHHHHHhCCCCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCceeecccHHHHHHHHHHHHHHhcc
Q 047227 163 KAEGEALVIKANGTNGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICAERALAS 242 (485)
Q Consensus 163 K~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~D~a~a~~~~~~~~~~ 242 (485)
|..+|.+++. ++++++||+.+|| +..+...+...+..++++.+.++ .++++|++|+|++++.+++.
T Consensus 134 K~~~e~~~~~------~~~~~iR~~~v~G--~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~dva~~i~~~~~~--- 199 (273)
T 2ggs_A 134 KLLGETFALQ------DDSLIIRTSGIFR--NKGFPIYVYKTLKEGKTVFAFKG---YYSPISARKLASAILELLEL--- 199 (273)
T ss_dssp HHHHHHHHCC------TTCEEEEECCCBS--SSSHHHHHHHHHHTTCCEEEESC---EECCCBHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHhC------CCeEEEecccccc--ccHHHHHHHHHHHcCCCEEeecC---CCCceEHHHHHHHHHHHHhc---
Confidence 9999999876 5679999999998 34455666677778888777664 78999999999999998773
Q ss_pred ccchhhccCCcEEEeeCCCCccHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCCCCCCCCHHHHHhh
Q 047227 243 EVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELTYRLLGPYGMKVPQLTPSRVRLL 322 (485)
Q Consensus 243 ~~~~~~~~~g~~ynv~~~~~~t~~el~~~i~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 322 (485)
..+++||+++ +++|+.|+++.+.+.+|.+.+.+. |.+. . .... ..
T Consensus 200 -------~~~g~~~i~~-~~~s~~e~~~~~~~~~g~~~~~~~-~~~~------------------~-~~~~-------~~ 244 (273)
T 2ggs_A 200 -------RKTGIIHVAG-ERISRFELALKIKEKFNLPGEVKE-VDEV------------------R-GWIA-------KR 244 (273)
T ss_dssp -------TCCEEEECCC-CCEEHHHHHHHHHHHTTCCSCEEE-ESSC------------------T-TCCS-------CC
T ss_pred -------CcCCeEEECC-CcccHHHHHHHHHHHhCCChhhcc-cccc------------------c-cccc-------CC
Confidence 1245999999 999999999999999998765432 1110 0 0000 01
Q ss_pred ccceeeehhhHHhhcCCCC-CCChHHHH
Q 047227 323 SCSRTFDCSKAKDLLGYMP-IVPLEEGI 349 (485)
Q Consensus 323 ~~~~~~d~~ka~~~lG~~p-~~~l~e~i 349 (485)
.....+|++|+++.|||+| .++++|++
T Consensus 245 ~~~~~~d~~k~~~~lG~~p~~~~l~~~~ 272 (273)
T 2ggs_A 245 PYDSSLDSSRARKILSTDFYTLDLDGMV 272 (273)
T ss_dssp CSBCCBCCHHHHHHCSSCCCSCCGGGCC
T ss_pred CcccccCHHHHHHHhCCCCCCccccccc
Confidence 1345689999999999999 57898865
|
| >4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-34 Score=299.23 Aligned_cols=277 Identities=22% Similarity=0.183 Sum_probs=207.4
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhc---CCceEEEeecCCccccCCccchhhhhhh--------------hcCCCeEEE
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRY---DMFSVRIADLSDSIALEPHEEQGILGEA--------------LRSGRAHYV 67 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~---G~~~V~~~~r~~~~~~~~~~~~~~~~~~--------------~~~~~v~~~ 67 (485)
.++|+|||||||||||+++++.|+++ | ++|++++|......... .+... ....+++++
T Consensus 71 ~~~~~VLVTGatG~IG~~l~~~Ll~~~~~g-~~V~~l~R~~~~~~~~~----~l~~~~~~~~~~~~~~~~~~~~~~v~~v 145 (478)
T 4dqv_A 71 PELRTVLLTGATGFLGRYLVLELLRRLDVD-GRLICLVRAESDEDARR----RLEKTFDSGDPELLRHFKELAADRLEVV 145 (478)
T ss_dssp SCCCEEEEECTTSHHHHHHHHHHHHHSCTT-CEEEEEECSSSHHHHHH----HHHGGGCSSCHHHHHHHHHHHTTTEEEE
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHhcCCCC-CEEEEEECCCCcHHHHH----HHHHHHHhcchhhhhhhhhhccCceEEE
Confidence 46799999999999999999999999 8 69999998754211000 01111 123689999
Q ss_pred EecCC------CHHHHHHHhcCCCEEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCccccccCCCC
Q 047227 68 SFDLR------HKAQVLQALQGAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVVFDGVHG 141 (485)
Q Consensus 68 ~~Dl~------d~~~l~~~~~~~d~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy~~~~~~ 141 (485)
.+|++ |.+.+.++++++|+|||+|+.... .++...+++|+.++.+++++|++.++++|||+||.++|+.....
T Consensus 146 ~~Dl~~~~~gld~~~~~~~~~~~D~Vih~Aa~~~~-~~~~~~~~~Nv~gt~~ll~aa~~~~~~~~V~iSS~~v~~~~~~~ 224 (478)
T 4dqv_A 146 AGDKSEPDLGLDQPMWRRLAETVDLIVDSAAMVNA-FPYHELFGPNVAGTAELIRIALTTKLKPFTYVSTADVGAAIEPS 224 (478)
T ss_dssp ECCTTSGGGGCCHHHHHHHHHHCCEEEECCSSCSB-SSCCEEHHHHHHHHHHHHHHHTSSSCCCEEEEEEGGGGTTSCTT
T ss_pred EeECCCcccCCCHHHHHHHHcCCCEEEECccccCC-cCHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeehhhcCccCCC
Confidence 99998 778899999999999999996554 67778899999999999999999999999999999998753333
Q ss_pred cCCCCCCCCC---------CCCCCchHHHHHHHHHHHHHHHhCCCCceEEEEecCCcccCCC-------CCChHHHHHHH
Q 047227 142 IINGNEALPY---------PPKHNDFYSATKAEGEALVIKANGTNGLLTCCIRPSSIFGPGD-------RLLVPSLVAAA 205 (485)
Q Consensus 142 ~~~~~e~~~~---------~~~~~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~-------~~~~~~~~~~~ 205 (485)
.. +|+.+. +....+.|+.+|..+|.+++.++++.|++++++||++|||++. ..++..++...
T Consensus 225 ~~--~E~~~~~p~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gi~~~ivRpg~v~G~~~~~g~~~~~~~~~~l~~~~ 302 (478)
T 4dqv_A 225 AF--TEDADIRVISPTRTVDGGWAGGYGTSKWAGEVLLREANDLCALPVAVFRCGMILADTSYAGQLNMSDWVTRMVLSL 302 (478)
T ss_dssp TC--CSSSCHHHHCCEEECCTTSEECHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEECCSSSSSCCCTTBHHHHHHHHH
T ss_pred Cc--CCcccccccCcccccccccccchHHHHHHHHHHHHHHHHHhCCCeEEEECceeeCCCccCCcCCHHHHHHHHHHHH
Confidence 22 332221 1122356999999999999999876799999999999999854 12455555544
Q ss_pred HcCCCeE--Eec---C---CCceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCCC--ccHHHHHHHHHHH
Q 047227 206 RAGKSKF--IIG---D---GNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMES--IKFWEFVSLILEG 275 (485)
Q Consensus 206 ~~g~~~~--~~g---~---g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~--~t~~el~~~i~~~ 275 (485)
...+..+ +++ + +++.++|+|++|+|++++.++..... .+...+++||++++++ +++.|+++.+.+.
T Consensus 303 ~~~g~~P~~~~~~~~~G~~~~~~~~~v~vdDvA~ai~~~~~~~~~----~~~~~~~~ynv~~~~~~~~s~~el~~~l~~~ 378 (478)
T 4dqv_A 303 MATGIAPRSFYEPDSEGNRQRAHFDGLPVTFVAEAIAVLGARVAG----SSLAGFATYHVMNPHDDGIGLDEYVDWLIEA 378 (478)
T ss_dssp HHHCEEESCSBCCCTTSCCCCCCCCEEEHHHHHHHHHHHHHTTC-----CCCCSEEEEEESCCCCSSCSHHHHHHHHHHT
T ss_pred HHcCcccccccccccccccccceeeeeeHHHHHHHHHHHHhhccc----CCCCCCceEEecCCCCCCcCHHHHHHHHHHc
Confidence 4332222 111 1 26789999999999999999874321 1235678999999987 9999999999995
Q ss_pred cCCCCCCc-cCCHHHHHHHH
Q 047227 276 LGYQRPRI-KIPAFVMMPIA 294 (485)
Q Consensus 276 ~g~~~~~~-~~p~~~~~~~~ 294 (485)
|.+.+.+ .+|.|+....+
T Consensus 379 -g~~~~~i~~~~~w~~~l~~ 397 (478)
T 4dqv_A 379 -GYPIRRIDDFAEWLQRFEA 397 (478)
T ss_dssp -TCSCEEESSHHHHHHHHHH
T ss_pred -CCCcccCCCHHHHHHHHHH
Confidence 8777655 56766554443
|
| >2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-32 Score=274.21 Aligned_cols=236 Identities=17% Similarity=0.207 Sum_probs=196.0
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhc-CCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcC
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRY-DMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQG 83 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~-G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~ 83 (485)
.++|+||||||||+||+++++.|+++ |+.+|++++|...... .+...+...+++++.+|++|.+++.+++++
T Consensus 19 ~~~k~vlVTGatG~iG~~l~~~L~~~~g~~~V~~~~r~~~~~~-------~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~ 91 (344)
T 2gn4_A 19 LDNQTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDELKQS-------EMAMEFNDPRMRFFIGDVRDLERLNYALEG 91 (344)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHHCCCSEEEEEESCHHHHH-------HHHHHHCCTTEEEEECCTTCHHHHHHHTTT
T ss_pred hCCCEEEEECCCcHHHHHHHHHHHhhCCCCEEEEEECChhhHH-------HHHHHhcCCCEEEEECCCCCHHHHHHHHhc
Confidence 45689999999999999999999999 9449999998643210 012223346899999999999999999999
Q ss_pred CCEEEEcCCCCC---CCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCccccccCCCCcCCCCCCCCCCCCCCchHH
Q 047227 84 AEVVFHMAAPNS---SINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDFYS 160 (485)
Q Consensus 84 ~d~Vih~aa~~~---~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy~~~~~~~~~~~e~~~~~~~~~~~Y~ 160 (485)
+|+|||+||... ...++...+++|+.|+.+++++|++.++++||++||..++ .|.+.|+
T Consensus 92 ~D~Vih~Aa~~~~~~~~~~~~~~~~~Nv~gt~~l~~aa~~~~v~~~V~~SS~~~~------------------~p~~~Y~ 153 (344)
T 2gn4_A 92 VDICIHAAALKHVPIAEYNPLECIKTNIMGASNVINACLKNAISQVIALSTDKAA------------------NPINLYG 153 (344)
T ss_dssp CSEEEECCCCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECCGGGS------------------SCCSHHH
T ss_pred CCEEEECCCCCCCCchhcCHHHHHHHHHHHHHHHHHHHHhCCCCEEEEecCCccC------------------CCccHHH
Confidence 999999999543 2346778999999999999999999999999999997664 3468999
Q ss_pred HHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCChHHHHHHHHcCC-CeEEecCCCceeecccHHHHHHHHHHH
Q 047227 161 ATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGK-SKFIIGDGNNVYDFTYVANVAHAHICA 236 (485)
Q Consensus 161 ~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~-~~~~~g~g~~~~~~i~v~D~a~a~~~~ 236 (485)
.+|..+|.+++.++.. .+++++++||+++|||+. ..++.+...+..|+ ++.+. +++..++|+|++|+|++++.+
T Consensus 154 ~sK~~~E~~~~~~~~~~~~~g~~~~~vRpg~v~g~~~-~~i~~~~~~~~~g~~~~~i~-~~~~~r~~i~v~D~a~~v~~~ 231 (344)
T 2gn4_A 154 ATKLCSDKLFVSANNFKGSSQTQFSVVRYGNVVGSRG-SVVPFFKKLVQNKASEIPIT-DIRMTRFWITLDEGVSFVLKS 231 (344)
T ss_dssp HHHHHHHHHHHHGGGCCCSSCCEEEEECCCEETTCTT-SHHHHHHHHHHHTCCCEEES-CTTCEEEEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCcEEEEEEeccEECCCC-CHHHHHHHHHHcCCCceEEe-CCCeEEeeEEHHHHHHHHHHH
Confidence 9999999999998754 579999999999999975 46778888888888 66654 788899999999999999999
Q ss_pred HHHhccccchhhccCCcEEEeeCCCCccHHHHHHHHHHHcC
Q 047227 237 ERALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLG 277 (485)
Q Consensus 237 ~~~~~~~~~~~~~~~g~~ynv~~~~~~t~~el~~~i~~~~g 277 (485)
++. . ..|++|+++++ .+++.|+++.+.+.++
T Consensus 232 l~~--------~-~~g~~~~~~~~-~~s~~el~~~i~~~~~ 262 (344)
T 2gn4_A 232 LKR--------M-HGGEIFVPKIP-SMKMTDLAKALAPNTP 262 (344)
T ss_dssp HHH--------C-CSSCEEEECCC-EEEHHHHHHHHCTTCC
T ss_pred Hhh--------c-cCCCEEecCCC-cEEHHHHHHHHHHhCC
Confidence 873 1 34789998775 6999999999976543
|
| >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-33 Score=259.61 Aligned_cols=223 Identities=17% Similarity=0.144 Sum_probs=176.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCCCE
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGAEV 86 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~d~ 86 (485)
+|+|||||||||||+++++.|+++| ++|++++|....... ...+++++.+|++|++++.++++++|+
T Consensus 4 m~~ilItGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~------------~~~~~~~~~~Dl~d~~~~~~~~~~~d~ 70 (227)
T 3dhn_A 4 VKKIVLIGASGFVGSALLNEALNRG-FEVTAVVRHPEKIKI------------ENEHLKVKKADVSSLDEVCEVCKGADA 70 (227)
T ss_dssp CCEEEEETCCHHHHHHHHHHHHTTT-CEEEEECSCGGGCCC------------CCTTEEEECCCTTCHHHHHHHHTTCSE
T ss_pred CCEEEEEcCCchHHHHHHHHHHHCC-CEEEEEEcCcccchh------------ccCceEEEEecCCCHHHHHHHhcCCCE
Confidence 5899999999999999999999999 699999998653211 025799999999999999999999999
Q ss_pred EEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCccccccCCCCcCCCCCCCCCCCCCCchHHHHHHHH
Q 047227 87 VFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDFYSATKAEG 166 (485)
Q Consensus 87 Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy~~~~~~~~~~~e~~~~~~~~~~~Y~~sK~~~ 166 (485)
|||+|+.... + ...+++|+.++.+++++|++.+++||||+||.++|+...... .+++ +..|.+.|+.+|..+
T Consensus 71 vi~~a~~~~~--~-~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss~~~~~~~~~~~-~~~~----~~~p~~~Y~~sK~~~ 142 (227)
T 3dhn_A 71 VISAFNPGWN--N-PDIYDETIKVYLTIIDGVKKAGVNRFLMVGGAGSLFIAPGLR-LMDS----GEVPENILPGVKALG 142 (227)
T ss_dssp EEECCCC---------CCSHHHHHHHHHHHHHHHTTCSEEEEECCSTTSEEETTEE-GGGT----TCSCGGGHHHHHHHH
T ss_pred EEEeCcCCCC--C-hhHHHHHHHHHHHHHHHHHHhCCCEEEEeCChhhccCCCCCc-cccC----CcchHHHHHHHHHHH
Confidence 9999985422 2 236899999999999999999999999999999886433222 2222 356788999999999
Q ss_pred HHHHHHHhCCCCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCceeecccHHHHHHHHHHHHHHhccccch
Q 047227 167 EALVIKANGTNGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICAERALASEVTV 246 (485)
Q Consensus 167 E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~ 246 (485)
|.+++.+.++.+++++++||+++|||+..... ...+....+. .++. ++|+|++|+|++++.+++
T Consensus 143 e~~~~~~~~~~~~~~~ilrp~~v~g~~~~~~~------~~~~~~~~~~-~~~~-~~~i~~~Dva~ai~~~l~-------- 206 (227)
T 3dhn_A 143 EFYLNFLMKEKEIDWVFFSPAADMRPGVRTGR------YRLGKDDMIV-DIVG-NSHISVEDYAAAMIDELE-------- 206 (227)
T ss_dssp HHHHHTGGGCCSSEEEEEECCSEEESCCCCCC------CEEESSBCCC-CTTS-CCEEEHHHHHHHHHHHHH--------
T ss_pred HHHHHHHhhccCccEEEEeCCcccCCCccccc------eeecCCCccc-CCCC-CcEEeHHHHHHHHHHHHh--------
Confidence 99999998788999999999999999864210 1122222222 2222 899999999999999988
Q ss_pred hhccCCcEEEeeCCCCccHH
Q 047227 247 AEKAAGQAYFVTNMESIKFW 266 (485)
Q Consensus 247 ~~~~~g~~ynv~~~~~~t~~ 266 (485)
.+...|+.|+++++++.++.
T Consensus 207 ~~~~~g~~~~~~~~~~~~~~ 226 (227)
T 3dhn_A 207 HPKHHQERFTIGYLEHHHHH 226 (227)
T ss_dssp SCCCCSEEEEEECCSCCC--
T ss_pred CccccCcEEEEEeehhcccC
Confidence 45577999999999998875
|
| >3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-31 Score=265.41 Aligned_cols=299 Identities=14% Similarity=0.114 Sum_probs=211.8
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc--
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ-- 82 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 82 (485)
+.+|+|||||||||||+++++.|+++| ++|++++|..+.. +... . ....+...+++++.+|+.|.+++.++++
T Consensus 8 M~~~~IlVtGatG~iG~~l~~~L~~~g-~~V~~l~R~~~~~--~~~~-~-~~~~l~~~~v~~~~~Dl~d~~~l~~~~~~~ 82 (346)
T 3i6i_A 8 SPKGRVLIAGATGFIGQFVATASLDAH-RPTYILARPGPRS--PSKA-K-IFKALEDKGAIIVYGLINEQEAMEKILKEH 82 (346)
T ss_dssp ---CCEEEECTTSHHHHHHHHHHHHTT-CCEEEEECSSCCC--HHHH-H-HHHHHHHTTCEEEECCTTCHHHHHHHHHHT
T ss_pred CCCCeEEEECCCcHHHHHHHHHHHHCC-CCEEEEECCCCCC--hhHH-H-HHHHHHhCCcEEEEeecCCHHHHHHHHhhC
Confidence 345799999999999999999999999 6999999976321 0000 0 1112335789999999999999999999
Q ss_pred CCCEEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcC-CCEEEEecCccccccCCCCcCCCCCCCCCCCCCCchHHH
Q 047227 83 GAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELK-VKRLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDFYSA 161 (485)
Q Consensus 83 ~~d~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~-v~r~V~~SS~~vy~~~~~~~~~~~e~~~~~~~~~~~Y~~ 161 (485)
++|+|||+++. .|+.++.+++++|++.| +++||+ | +|+. +.+|.. +..|.+.|+.
T Consensus 83 ~~d~Vi~~a~~------------~n~~~~~~l~~aa~~~g~v~~~v~-S---~~g~------~~~e~~--~~~p~~~y~~ 138 (346)
T 3i6i_A 83 EIDIVVSTVGG------------ESILDQIALVKAMKAVGTIKRFLP-S---EFGH------DVNRAD--PVEPGLNMYR 138 (346)
T ss_dssp TCCEEEECCCG------------GGGGGHHHHHHHHHHHCCCSEEEC-S---CCSS------CTTTCC--CCTTHHHHHH
T ss_pred CCCEEEECCch------------hhHHHHHHHHHHHHHcCCceEEee-c---ccCC------CCCccC--cCCCcchHHH
Confidence 99999999983 38889999999999999 999986 4 4531 123332 3467789999
Q ss_pred HHHHHHHHHHHHhCCCCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCceeecccHHHHHHHHHHHHHHhc
Q 047227 162 TKAEGEALVIKANGTNGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICAERALA 241 (485)
Q Consensus 162 sK~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~D~a~a~~~~~~~~~ 241 (485)
+|..+|+++++ .|++++++||+.++|.......... .....++.+.++|+++..++|+|++|+|++++.+++.
T Consensus 139 sK~~~e~~l~~----~g~~~tivrpg~~~g~~~~~~~~~~-~~~~~~~~~~~~g~g~~~~~~i~~~Dva~~~~~~l~~-- 211 (346)
T 3i6i_A 139 EKRRVRQLVEE----SGIPFTYICCNSIASWPYYNNIHPS-EVLPPTDFFQIYGDGNVKAYFVAGTDIGKFTMKTVDD-- 211 (346)
T ss_dssp HHHHHHHHHHH----TTCCBEEEECCEESSCCCSCC------CCCCSSCEEEETTSCCCEEEECHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHH----cCCCEEEEEecccccccCccccccc-cccCCCceEEEccCCCceEEecCHHHHHHHHHHHHhC--
Confidence 99999999987 6899999999999997644332211 1223566788999999999999999999999998762
Q ss_pred cccchhhccCCcEEEeeC-CCCccHHHHHHHHHHHcCCCCCCccCCHHHHHHHHH--------HHHHHHHHhCCCCCCCC
Q 047227 242 SEVTVAEKAAGQAYFVTN-MESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAH--------MVELTYRLLGPYGMKVP 312 (485)
Q Consensus 242 ~~~~~~~~~~g~~ynv~~-~~~~t~~el~~~i~~~~g~~~~~~~~p~~~~~~~~~--------~~~~~~~~~~~~~~~~p 312 (485)
+...++.|++++ ++.+|+.|+++.+.+.+|.+.+...+|......... ....++......
T Consensus 212 ------~~~~~~~~~i~g~~~~~s~~e~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g----- 280 (346)
T 3i6i_A 212 ------VRTLNKSVHFRPSCNCLNINELASVWEKKIGRTLPRVTVTEDDLLAAAGENIIPQSVVAAFTHDIFIKG----- 280 (346)
T ss_dssp ------GGGTTEEEECCCGGGEECHHHHHHHHHHHHTSCCCEEEECHHHHHHHHHTCCTTHHHHHHHHHHHHTTC-----
T ss_pred ------ccccCeEEEEeCCCCCCCHHHHHHHHHHHHCCCCceEecCHHHHHHHHhcCCChhhhHHHHHHHHhccC-----
Confidence 335578899985 489999999999999999998887777753321111 111111111100
Q ss_pred CCCHHHHHhhccceeeeh-----hhHHhhc-CCCCCCChHHHHHHHHHHHHHhHhc
Q 047227 313 QLTPSRVRLLSCSRTFDC-----SKAKDLL-GYMPIVPLEEGIKRTVDSYSHLRAE 362 (485)
Q Consensus 313 ~~~~~~~~~~~~~~~~d~-----~ka~~~l-G~~p~~~l~e~i~~~~~~~~~~~~~ 362 (485)
....++. .++++.+ +++| ++++|.++++++|+++..+.
T Consensus 281 -----------~~~~~~~~~~~~~~~~~~~p~~~~-t~~~e~l~~~~~~~~~~~~~ 324 (346)
T 3i6i_A 281 -----------CQVNFSIDGPEDVEVTTLYPEDSF-RTVEECFGEYIVKMEEKQPT 324 (346)
T ss_dssp -----------TTTSSCCCSTTEEEHHHHSTTCCC-CCHHHHHHHHHCC-------
T ss_pred -----------CCcccccCCCCcccHHHhCCCCCc-CcHHHHHHHHHHHhhccccc
Confidence 0011222 2244444 6776 59999999999999876543
|
| >3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens} | Back alignment and structure |
|---|
Probab=99.98 E-value=2.4e-31 Score=255.03 Aligned_cols=237 Identities=19% Similarity=0.180 Sum_probs=189.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCCCE
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGAEV 86 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~d~ 86 (485)
+|+|||||||||||+++++.|+++| ++|++++|...... ..+++++.+|++|++++.++++++|+
T Consensus 2 ~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~--------------~~~~~~~~~Dl~d~~~~~~~~~~~d~ 66 (267)
T 3ay3_A 2 LNRLLVTGAAGGVGSAIRPHLGTLA-HEVRLSDIVDLGAA--------------EAHEEIVACDLADAQAVHDLVKDCDG 66 (267)
T ss_dssp EEEEEEESTTSHHHHHHGGGGGGTE-EEEEECCSSCCCCC--------------CTTEEECCCCTTCHHHHHHHHTTCSE
T ss_pred CceEEEECCCCHHHHHHHHHHHhCC-CEEEEEeCCCcccc--------------CCCccEEEccCCCHHHHHHHHcCCCE
Confidence 3689999999999999999999999 69999998754210 13678999999999999999999999
Q ss_pred EEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCccccccCCCCcCCCCCCCCCCCCCCchHHHHHHHH
Q 047227 87 VFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDFYSATKAEG 166 (485)
Q Consensus 87 Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy~~~~~~~~~~~e~~~~~~~~~~~Y~~sK~~~ 166 (485)
|||+|+.. ...++...+++|+.++.+++++|++.+++||||+||.++|+.... ..+.+|+.| ..|.+.|+.+|..+
T Consensus 67 vi~~a~~~-~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~~~~~~~~-~~~~~E~~~--~~~~~~Y~~sK~~~ 142 (267)
T 3ay3_A 67 IIHLGGVS-VERPWNDILQANIIGAYNLYEAARNLGKPRIVFASSNHTIGYYPR-TTRIDTEVP--RRPDSLYGLSKCFG 142 (267)
T ss_dssp EEECCSCC-SCCCHHHHHHHTHHHHHHHHHHHHHTTCCEEEEEEEGGGSTTSBT-TSCBCTTSC--CCCCSHHHHHHHHH
T ss_pred EEECCcCC-CCCCHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCCHHHhCCCCC-CCCCCCCCC--CCCCChHHHHHHHH
Confidence 99999954 345667889999999999999999999999999999999974322 223455443 56788999999999
Q ss_pred HHHHHHHhCCCCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCceeecccHHHHHHHHHHHHHHhccccch
Q 047227 167 EALVIKANGTNGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICAERALASEVTV 246 (485)
Q Consensus 167 E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~ 246 (485)
|.+++.+...++++++++||+++|+.. .+++..++|+|++|+|++++.+++.
T Consensus 143 e~~~~~~~~~~gi~~~~lrp~~v~~~~---------------------~~~~~~~~~~~~~dva~~~~~~~~~------- 194 (267)
T 3ay3_A 143 EDLASLYYHKFDIETLNIRIGSCFPKP---------------------KDARMMATWLSVDDFMRLMKRAFVA------- 194 (267)
T ss_dssp HHHHHHHHHTTCCCEEEEEECBCSSSC---------------------CSHHHHHHBCCHHHHHHHHHHHHHS-------
T ss_pred HHHHHHHHHHcCCCEEEEeceeecCCC---------------------CCCCeeeccccHHHHHHHHHHHHhC-------
Confidence 999999887789999999999999421 1233467899999999999998773
Q ss_pred hhccCCcEEEeeCCCCccHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCCCCCCCCHHHHHhhccce
Q 047227 247 AEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELTYRLLGPYGMKVPQLTPSRVRLLSCSR 326 (485)
Q Consensus 247 ~~~~~g~~ynv~~~~~~t~~el~~~i~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 326 (485)
+...+++|++.++... .
T Consensus 195 -~~~~~~~~~~~~~~~~--------------------------------------------------------------~ 211 (267)
T 3ay3_A 195 -PKLGCTVVYGASANTE--------------------------------------------------------------S 211 (267)
T ss_dssp -SCCCEEEEEECCSCSS--------------------------------------------------------------C
T ss_pred -CCCCceeEecCCCccc--------------------------------------------------------------c
Confidence 2223467777543210 1
Q ss_pred eeehhhHHhhcCCCCCCChHHHHHHHHH
Q 047227 327 TFDCSKAKDLLGYMPIVPLEEGIKRTVD 354 (485)
Q Consensus 327 ~~d~~ka~~~lG~~p~~~l~e~i~~~~~ 354 (485)
..|..++ +.+||+|+++++++++++.+
T Consensus 212 ~~d~~~~-~~lg~~p~~~~~~~~~~~~~ 238 (267)
T 3ay3_A 212 WWDNDKS-AFLGWVPQDSSEIWREEIEQ 238 (267)
T ss_dssp CBCCGGG-GGGCCCCCCCGGGGHHHHHH
T ss_pred ccCHHHH-HHcCCCCCCCHHHHHHHHHh
Confidence 2477788 77999999999999998754
|
| >3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A | Back alignment and structure |
|---|
Probab=99.98 E-value=1e-32 Score=277.19 Aligned_cols=212 Identities=19% Similarity=0.205 Sum_probs=184.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecC-CCHHHHHHHhcCCCE
Q 047227 8 RLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDL-RHKAQVLQALQGAEV 86 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl-~d~~~l~~~~~~~d~ 86 (485)
|+|||||||||||+++++.|+++|+.+|+.+ |+ .|++++.++++++|+
T Consensus 1 M~VlVtGatG~iG~~l~~~L~~~g~~~v~~~-------------------------------d~~~d~~~l~~~~~~~d~ 49 (369)
T 3st7_A 1 MNIVITGAKGFVGKNLKADLTSTTDHHIFEV-------------------------------HRQTKEEELESALLKADF 49 (369)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHCCCEEEEC-------------------------------CTTCCHHHHHHHHHHCSE
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCEEEEE-------------------------------CCCCCHHHHHHHhccCCE
Confidence 6899999999999999999999994256544 44 788999999999999
Q ss_pred EEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCC-EEEEecCccccccCCCCcCCCCCCCCCCCCCCchHHHHHHH
Q 047227 87 VFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVK-RLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDFYSATKAE 165 (485)
Q Consensus 87 Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~-r~V~~SS~~vy~~~~~~~~~~~e~~~~~~~~~~~Y~~sK~~ 165 (485)
|||+|+.... .++...+++|+.++.+++++|++.+++ +|||+||.++|+ .+.|+.+|..
T Consensus 50 Vih~a~~~~~-~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v~~Ss~~~~~-------------------~~~Y~~sK~~ 109 (369)
T 3st7_A 50 IVHLAGVNRP-EHDKEFSLGNVSYLDHVLDILTRNTKKPAILLSSSIQATQ-------------------DNPYGESKLQ 109 (369)
T ss_dssp EEECCCSBCT-TCSTTCSSSCCBHHHHHHHHHTTCSSCCEEEEEEEGGGGS-------------------CSHHHHHHHH
T ss_pred EEECCcCCCC-CCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeCchhhcC-------------------CCCchHHHHH
Confidence 9999995443 466778899999999999999999987 999999999873 4789999999
Q ss_pred HHHHHHHHhCCCCceEEEEecCCcccCCCC----CChHHHHHHHHcCCCeEEecCCCceeecccHHHHHHHHHHHHHHhc
Q 047227 166 GEALVIKANGTNGLLTCCIRPSSIFGPGDR----LLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICAERALA 241 (485)
Q Consensus 166 ~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~----~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~D~a~a~~~~~~~~~ 241 (485)
+|++++.++++.+++++++||+++|||+.. .+++.++..+..++++.+ +++++.++|+|++|+|++++.+++.
T Consensus 110 ~E~~~~~~~~~~g~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~v~Dva~~~~~~l~~-- 186 (369)
T 3st7_A 110 GEQLLREYAEEYGNTVYIYRWPNLFGKWCKPNYNSVIATFCYKIARNEEIQV-NDRNVELTLNYVDDIVAEIKRAIEG-- 186 (369)
T ss_dssp HHHHHHHHHHHHCCCEEEEEECEEECTTCCTTSSCHHHHHHHHHHTTCCCCC-SCTTCEEEEEEHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHhCCCEEEEECCceeCCCCCCCcchHHHHHHHHHHcCCCeEe-cCCCeEEEEEEHHHHHHHHHHHHhC--
Confidence 999999998878999999999999999764 467888888888887765 5888999999999999999999873
Q ss_pred cccchhhccC-CcEEEeeCCCCccHHHHHHHHHHHcCCC
Q 047227 242 SEVTVAEKAA-GQAYFVTNMESIKFWEFVSLILEGLGYQ 279 (485)
Q Consensus 242 ~~~~~~~~~~-g~~ynv~~~~~~t~~el~~~i~~~~g~~ 279 (485)
+... +++||+++++++|+.|+++.+.+.+|.+
T Consensus 187 ------~~~~~~~~~~i~~~~~~s~~e~~~~~~~~~g~~ 219 (369)
T 3st7_A 187 ------TPTIENGVPTVPNVFKVTLGEIVDLLYKFKQSR 219 (369)
T ss_dssp ------CCCEETTEECCSCCEEEEHHHHHHHHHHHHHHH
T ss_pred ------CcccCCceEEeCCCCceeHHHHHHHHHHHhCCC
Confidence 2122 7899999999999999999999998864
|
| >3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-30 Score=252.43 Aligned_cols=279 Identities=14% Similarity=0.157 Sum_probs=199.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHhc-CCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCCCE
Q 047227 8 RLCVVTGGRGFAARHLVEMLIRY-DMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGAEV 86 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~~-G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~d~ 86 (485)
|+|||||||||||+++++.|.++ | ++|++++|.+.... .+...+++++.+|+.|++++.++++++|+
T Consensus 1 M~ilVtGatG~iG~~l~~~L~~~~g-~~V~~~~R~~~~~~-----------~~~~~~v~~~~~D~~d~~~l~~~~~~~d~ 68 (289)
T 3e48_A 1 MNIMLTGATGHLGTHITNQAIANHI-DHFHIGVRNVEKVP-----------DDWRGKVSVRQLDYFNQESMVEAFKGMDT 68 (289)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTC-TTEEEEESSGGGSC-----------GGGBTTBEEEECCTTCHHHHHHHTTTCSE
T ss_pred CEEEEEcCCchHHHHHHHHHhhCCC-CcEEEEECCHHHHH-----------HhhhCCCEEEEcCCCCHHHHHHHHhCCCE
Confidence 57999999999999999999998 7 69999998765211 12346899999999999999999999999
Q ss_pred EEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCccccccCCCCcCCCCCCCCCCCCCCchHHHHHHHH
Q 047227 87 VFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDFYSATKAEG 166 (485)
Q Consensus 87 Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy~~~~~~~~~~~e~~~~~~~~~~~Y~~sK~~~ 166 (485)
|||+++.... ...|+.++.+++++|++.|++||||+||.+. .+..++ .+...+..+
T Consensus 69 vi~~a~~~~~-------~~~~~~~~~~l~~aa~~~gv~~iv~~Ss~~~-----------~~~~~~------~~~~~~~~~ 124 (289)
T 3e48_A 69 VVFIPSIIHP-------SFKRIPEVENLVYAAKQSGVAHIIFIGYYAD-----------QHNNPF------HMSPYFGYA 124 (289)
T ss_dssp EEECCCCCCS-------HHHHHHHHHHHHHHHHHTTCCEEEEEEESCC-----------STTCCS------TTHHHHHHH
T ss_pred EEEeCCCCcc-------chhhHHHHHHHHHHHHHcCCCEEEEEcccCC-----------CCCCCC------ccchhHHHH
Confidence 9999984332 2458999999999999999999999999432 111111 123334466
Q ss_pred HHHHHHHhCCCCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCceeecccHHHHHHHHHHHHHHhccccch
Q 047227 167 EALVIKANGTNGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICAERALASEVTV 246 (485)
Q Consensus 167 E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~ 246 (485)
|+.+.. .+++++++||+.+||+. .. ++.....+. ....+.++..++|+|++|+|++++.++..
T Consensus 125 e~~~~~----~g~~~~ilrp~~~~~~~----~~-~~~~~~~~~-~~~~~~g~~~~~~i~~~Dva~~~~~~l~~------- 187 (289)
T 3e48_A 125 SRLLST----SGIDYTYVRMAMYMDPL----KP-YLPELMNMH-KLIYPAGDGRINYITRNDIARGVIAIIKN------- 187 (289)
T ss_dssp HHHHHH----HCCEEEEEEECEESTTH----HH-HHHHHHHHT-EECCCCTTCEEEEECHHHHHHHHHHHHHC-------
T ss_pred HHHHHH----cCCCEEEEecccccccc----HH-HHHHHHHCC-CEecCCCCceeeeEEHHHHHHHHHHHHcC-------
Confidence 666665 58999999999999973 22 333333333 23456788999999999999999999873
Q ss_pred hhccCCcEEEeeCCCCccHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCCCCCC-CCHHHHHhhccc
Q 047227 247 AEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELTYRLLGPYGMKVPQ-LTPSRVRLLSCS 325 (485)
Q Consensus 247 ~~~~~g~~ynv~~~~~~t~~el~~~i~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~~~~~~~ 325 (485)
+...|++||++ ++.+|+.|+++.+.+.+|++.+...+|..... .....+.+ .+. +.........+.
T Consensus 188 -~~~~g~~~~~~-~~~~s~~e~~~~~~~~~g~~~~~~~~~~~~~~---------~~~~~p~~--~~~~~~~~~~~~~~g~ 254 (289)
T 3e48_A 188 -PDTWGKRYLLS-GYSYDMKELAAILSEASGTEIKYEPVSLETFA---------EMYDEPKG--FGALLASMYHAGARGL 254 (289)
T ss_dssp -GGGTTCEEEEC-CEEEEHHHHHHHHHHHHTSCCEECCCCHHHHH---------HHTCCSTT--HHHHHHHHHHHHHTTT
T ss_pred -CCcCCceEEeC-CCcCCHHHHHHHHHHHHCCceeEEeCCHHHHH---------HHhcCCcc--HHHHHHHHHHHHHCCC
Confidence 22448899999 99999999999999999998877777764221 11111000 000 000111112223
Q ss_pred eeeehhhHHhhcCCCCCCChHHHHHHHH
Q 047227 326 RTFDCSKAKDLLGYMPIVPLEEGIKRTV 353 (485)
Q Consensus 326 ~~~d~~ka~~~lG~~p~~~l~e~i~~~~ 353 (485)
...+.+..++.+|.+|+ +++|.+++.-
T Consensus 255 ~~~~~~~~~~~~G~~p~-~~~~~~~~~~ 281 (289)
T 3e48_A 255 LDQESNDFKQLVNDQPQ-TLQSFLQENI 281 (289)
T ss_dssp TCCCCSHHHHHHSSCCC-CHHHHHHC--
T ss_pred ccccCchHHHHhCCCCC-CHHHHHHHHH
Confidence 33566778888999986 8988776643
|
| >3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.3e-30 Score=248.21 Aligned_cols=225 Identities=18% Similarity=0.165 Sum_probs=185.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCCCE
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGAEV 86 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~d~ 86 (485)
+|+||||||+|+||+++++.|+++| ++|++++|...... ..+++++.+|++|++++.++++++|+
T Consensus 3 ~k~vlVTGasg~IG~~la~~L~~~G-~~V~~~~r~~~~~~--------------~~~~~~~~~Dl~d~~~~~~~~~~~D~ 67 (267)
T 3rft_A 3 MKRLLVTGAAGQLGRVMRERLAPMA-EILRLADLSPLDPA--------------GPNEECVQCDLADANAVNAMVAGCDG 67 (267)
T ss_dssp EEEEEEESTTSHHHHHHHHHTGGGE-EEEEEEESSCCCCC--------------CTTEEEEECCTTCHHHHHHHHTTCSE
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcC-CEEEEEecCCcccc--------------CCCCEEEEcCCCCHHHHHHHHcCCCE
Confidence 5789999999999999999999999 69999998754211 35789999999999999999999999
Q ss_pred EEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCccccccCCCCcCCCCCCCCCCCCCCchHHHHHHHH
Q 047227 87 VFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDFYSATKAEG 166 (485)
Q Consensus 87 Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy~~~~~~~~~~~e~~~~~~~~~~~Y~~sK~~~ 166 (485)
|||+|+.. ...+++..+++|+.++.+++++|++.+++|+||+||..+|+..... .+.+|+. +..+.+.|+.||..+
T Consensus 68 vi~~Ag~~-~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iv~~SS~~~~g~~~~~-~~~~e~~--~~~~~~~Y~~sK~~~ 143 (267)
T 3rft_A 68 IVHLGGIS-VEKPFEQILQGNIIGLYNLYEAARAHGQPRIVFASSNHTIGYYPQT-ERLGPDV--PARPDGLYGVSKCFG 143 (267)
T ss_dssp EEECCSCC-SCCCHHHHHHHHTHHHHHHHHHHHHTTCCEEEEEEEGGGGTTSBTT-SCBCTTS--CCCCCSHHHHHHHHH
T ss_pred EEECCCCc-CcCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcchHHhCCCCCC-CCCCCCC--CCCCCChHHHHHHHH
Confidence 99999963 4456788999999999999999999999999999999999643222 2334443 357788999999999
Q ss_pred HHHHHHHhCCCCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCceeecccHHHHHHHHHHHHHHhccccch
Q 047227 167 EALVIKANGTNGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICAERALASEVTV 246 (485)
Q Consensus 167 E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~ 246 (485)
|.+++.++.+++++++++||+.+||+ +++++..++|++++|+++++..+++
T Consensus 144 e~~~~~~a~~~g~~~~~vr~~~v~~~---------------------~~~~~~~~~~~~~~d~a~~~~~~~~-------- 194 (267)
T 3rft_A 144 ENLARMYFDKFGQETALVRIGSCTPE---------------------PNNYRMLSTWFSHDDFVSLIEAVFR-------- 194 (267)
T ss_dssp HHHHHHHHHHHCCCEEEEEECBCSSS---------------------CCSTTHHHHBCCHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHhCCeEEEEEeecccCC---------------------CCCCCceeeEEcHHHHHHHHHHHHh--------
Confidence 99999988788999999999999987 2345667889999999999998877
Q ss_pred hhccCCcEEEeeCCCCccHHHHHHHHHHHcCCCCC
Q 047227 247 AEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRP 281 (485)
Q Consensus 247 ~~~~~g~~ynv~~~~~~t~~el~~~i~~~~g~~~~ 281 (485)
.+...+.++++.++++.+++++... +.+|++++
T Consensus 195 ~~~~~~~~~~~~s~~~~~~~~~~~~--~~~g~~p~ 227 (267)
T 3rft_A 195 APVLGCPVVWGASANDAGWWDNSHL--GFLGWKPK 227 (267)
T ss_dssp CSCCCSCEEEECCCCTTCCBCCGGG--GGGCCCCC
T ss_pred CCCCCceEEEEeCCCCCCcccChhH--HHCCCCCC
Confidence 2334456888888888888876443 56777544
|
| >3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.8e-30 Score=241.43 Aligned_cols=208 Identities=15% Similarity=0.160 Sum_probs=170.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCC-HHHHHHHhcCCCE
Q 047227 8 RLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRH-KAQVLQALQGAEV 86 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d-~~~l~~~~~~~d~ 86 (485)
|+||||||||+||+++++.|+++| ++|++++|....... .++++++.+|++| ++++.++++++|+
T Consensus 1 M~ilItGatG~iG~~l~~~L~~~g-~~V~~~~R~~~~~~~-------------~~~~~~~~~D~~d~~~~~~~~~~~~d~ 66 (219)
T 3dqp_A 1 MKIFIVGSTGRVGKSLLKSLSTTD-YQIYAGARKVEQVPQ-------------YNNVKAVHFDVDWTPEEMAKQLHGMDA 66 (219)
T ss_dssp CEEEEESTTSHHHHHHHHHHTTSS-CEEEEEESSGGGSCC-------------CTTEEEEECCTTSCHHHHHTTTTTCSE
T ss_pred CeEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCccchhh-------------cCCceEEEecccCCHHHHHHHHcCCCE
Confidence 589999999999999999999999 699999997642211 1579999999999 9999999999999
Q ss_pred EEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCccccccCCCCcCCCCCCCCCCCCCCchHHHHHHHH
Q 047227 87 VFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDFYSATKAEG 166 (485)
Q Consensus 87 Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy~~~~~~~~~~~e~~~~~~~~~~~Y~~sK~~~ 166 (485)
|||+|+... ...+++|+.++.+++++|++.++++|||+||..++... +.+| .+..|.+.|+.+|..+
T Consensus 67 vi~~ag~~~-----~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~~~~~~-----~~~e---~~~~~~~~Y~~sK~~~ 133 (219)
T 3dqp_A 67 IINVSGSGG-----KSLLKVDLYGAVKLMQAAEKAEVKRFILLSTIFSLQPE-----KWIG---AGFDALKDYYIAKHFA 133 (219)
T ss_dssp EEECCCCTT-----SSCCCCCCHHHHHHHHHHHHTTCCEEEEECCTTTTCGG-----GCCS---HHHHHTHHHHHHHHHH
T ss_pred EEECCcCCC-----CCcEeEeHHHHHHHHHHHHHhCCCEEEEECcccccCCC-----cccc---cccccccHHHHHHHHH
Confidence 999999543 23678999999999999999999999999998776422 1122 1345678999999999
Q ss_pred HHHHHHHhCCCCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCceeecccHHHHHHHHHHHHHHhccccch
Q 047227 167 EALVIKANGTNGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICAERALASEVTV 246 (485)
Q Consensus 167 E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~ 246 (485)
|++++ +..+++++++||+.+||+.....+ .. ++..+++++++|+|++++.+++.
T Consensus 134 e~~~~---~~~~i~~~ilrp~~v~g~~~~~~~--------------~~--~~~~~~~i~~~Dva~~i~~~l~~------- 187 (219)
T 3dqp_A 134 DLYLT---KETNLDYTIIQPGALTEEEATGLI--------------DI--NDEVSASNTIGDVADTIKELVMT------- 187 (219)
T ss_dssp HHHHH---HSCCCEEEEEEECSEECSCCCSEE--------------EE--SSSCCCCEEHHHHHHHHHHHHTC-------
T ss_pred HHHHH---hccCCcEEEEeCceEecCCCCCcc--------------cc--CCCcCCcccHHHHHHHHHHHHhC-------
Confidence 99997 257999999999999998643221 12 25778999999999999999772
Q ss_pred hhccCCcEEEeeCCCCccHHHHHH
Q 047227 247 AEKAAGQAYFVTNMESIKFWEFVS 270 (485)
Q Consensus 247 ~~~~~g~~ynv~~~~~~t~~el~~ 270 (485)
+...|++||+++++ .++.|+.+
T Consensus 188 -~~~~g~~~~i~~g~-~~~~e~~~ 209 (219)
T 3dqp_A 188 -DHSIGKVISMHNGK-TAIKEALE 209 (219)
T ss_dssp -GGGTTEEEEEEECS-EEHHHHHH
T ss_pred -ccccCcEEEeCCCC-ccHHHHHH
Confidence 33568999998864 88888765
|
| >2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-29 Score=246.67 Aligned_cols=241 Identities=19% Similarity=0.162 Sum_probs=186.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCCCE
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGAEV 86 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~d~ 86 (485)
+|+||||||||++|+++++.|+++|.++|++++|.+... ....+...+++++.+|+.|++++.++++++|+
T Consensus 5 ~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~R~~~~~---------~~~~l~~~~~~~~~~D~~d~~~l~~~~~~~d~ 75 (299)
T 2wm3_A 5 KKLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPRKK---------AAKELRLQGAEVVQGDQDDQVIMELALNGAYA 75 (299)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCSSEEEEEESCTTSH---------HHHHHHHTTCEEEECCTTCHHHHHHHHTTCSE
T ss_pred CCEEEEECCCchHHHHHHHHHHhcCCceEEEEEcCCCCH---------HHHHHHHCCCEEEEecCCCHHHHHHHHhcCCE
Confidence 479999999999999999999999834899999875421 01112235789999999999999999999999
Q ss_pred EEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCccccccCCCCcCCCCCCCCCCCCCCchHHHHHHHH
Q 047227 87 VFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDFYSATKAEG 166 (485)
Q Consensus 87 Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy~~~~~~~~~~~e~~~~~~~~~~~Y~~sK~~~ 166 (485)
|||+++... ....+.|+.++.+++++|++.|++||||+||.++|+.. + ..+...|+.+|..+
T Consensus 76 vi~~a~~~~-----~~~~~~~~~~~~~~~~aa~~~gv~~iv~~S~~~~~~~~--------~-----~~~~~~y~~sK~~~ 137 (299)
T 2wm3_A 76 TFIVTNYWE-----SCSQEQEVKQGKLLADLARRLGLHYVVYSGLENIKKLT--------A-----GRLAAAHFDGKGEV 137 (299)
T ss_dssp EEECCCHHH-----HTCHHHHHHHHHHHHHHHHHHTCSEEEECCCCCHHHHT--------T-----TSCCCHHHHHHHHH
T ss_pred EEEeCCCCc-----cccchHHHHHHHHHHHHHHHcCCCEEEEEcCccccccC--------C-----CcccCchhhHHHHH
Confidence 999997211 11246788999999999999999999999988877421 1 12346899999999
Q ss_pred HHHHHHHhCCCCceEEEEecCCcccCCCCCChHHHHHHHHcCCCe-EEecCCCceeecccHHHHHHHHHHHHHHhccccc
Q 047227 167 EALVIKANGTNGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSK-FIIGDGNNVYDFTYVANVAHAHICAERALASEVT 245 (485)
Q Consensus 167 E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~-~~~g~g~~~~~~i~v~D~a~a~~~~~~~~~~~~~ 245 (485)
|++++. .|++++++||+.+||+....+++. ....|+.. ...+.++..++|+|++|+|++++.++...
T Consensus 138 e~~~~~----~gi~~~ilrp~~~~~~~~~~~~~~---~~~~g~~~~~~~~~~~~~~~~i~~~Dva~~~~~~l~~~----- 205 (299)
T 2wm3_A 138 EEYFRD----IGVPMTSVRLPCYFENLLSHFLPQ---KAPDGKSYLLSLPTGDVPMDGMSVSDLGPVVLSLLKMP----- 205 (299)
T ss_dssp HHHHHH----HTCCEEEEECCEEGGGGGTTTCCE---ECTTSSSEEECCCCTTSCEEEECGGGHHHHHHHHHHSH-----
T ss_pred HHHHHH----CCCCEEEEeecHHhhhchhhcCCc---ccCCCCEEEEEecCCCCccceecHHHHHHHHHHHHcCh-----
Confidence 999987 489999999999999753321111 11234322 22334778899999999999999987631
Q ss_pred hhhccCCcEEEeeCCCCccHHHHHHHHHHHcCCCCCCccCCHHH
Q 047227 246 VAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFV 289 (485)
Q Consensus 246 ~~~~~~g~~ynv~~~~~~t~~el~~~i~~~~g~~~~~~~~p~~~ 289 (485)
+...|+.|++++ +.+|+.|+++.+.+.+|++.+...+|.+.
T Consensus 206 --~~~~g~~~~~~g-~~~s~~e~~~~~~~~~g~~~~~~~~~~~~ 246 (299)
T 2wm3_A 206 --EKYVGQNIGLST-CRHTAEEYAALLTKHTRKVVHDAKMTPED 246 (299)
T ss_dssp --HHHTTCEEECCS-EEECHHHHHHHHHHHHSSCEEECCCCTHH
T ss_pred --hhhCCeEEEeee-ccCCHHHHHHHHHHHHCCCceeEecCHHH
Confidence 124578999987 68999999999999999988777777654
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.97 E-value=7.3e-30 Score=240.04 Aligned_cols=216 Identities=16% Similarity=0.127 Sum_probs=173.9
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCe-EEEEecCCCHHHHHHHhcC
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRA-HYVSFDLRHKAQVLQALQG 83 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~Dl~d~~~l~~~~~~ 83 (485)
.++|+||||||||+||+++++.|+++| ++|++++|..... ..+...++ +++.+|++ +++.+++++
T Consensus 19 l~~~~ilVtGatG~iG~~l~~~L~~~G-~~V~~~~R~~~~~-----------~~~~~~~~~~~~~~Dl~--~~~~~~~~~ 84 (236)
T 3e8x_A 19 FQGMRVLVVGANGKVARYLLSELKNKG-HEPVAMVRNEEQG-----------PELRERGASDIVVANLE--EDFSHAFAS 84 (236)
T ss_dssp --CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSGGGH-----------HHHHHTTCSEEEECCTT--SCCGGGGTT
T ss_pred cCCCeEEEECCCChHHHHHHHHHHhCC-CeEEEEECChHHH-----------HHHHhCCCceEEEcccH--HHHHHHHcC
Confidence 467999999999999999999999999 5999999875421 11223478 99999999 678888999
Q ss_pred CCEEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCccccccCCCCcCCCCCCCCCCCCCCchHHHHH
Q 047227 84 AEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDFYSATK 163 (485)
Q Consensus 84 ~d~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy~~~~~~~~~~~e~~~~~~~~~~~Y~~sK 163 (485)
+|+|||+|+... ..++...+++|+.++.+++++|++.+++||||+||...+.. +.. + .+.+.|+.+|
T Consensus 85 ~D~vi~~ag~~~-~~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~~~~~---------~~~--~-~~~~~Y~~sK 151 (236)
T 3e8x_A 85 IDAVVFAAGSGP-HTGADKTILIDLWGAIKTIQEAEKRGIKRFIMVSSVGTVDP---------DQG--P-MNMRHYLVAK 151 (236)
T ss_dssp CSEEEECCCCCT-TSCHHHHHHTTTHHHHHHHHHHHHHTCCEEEEECCTTCSCG---------GGS--C-GGGHHHHHHH
T ss_pred CCEEEECCCCCC-CCCccccchhhHHHHHHHHHHHHHcCCCEEEEEecCCCCCC---------CCC--h-hhhhhHHHHH
Confidence 999999999543 35678899999999999999999999999999999554321 111 1 4678999999
Q ss_pred HHHHHHHHHHhCCCCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCceeecccHHHHHHHHHHHHHHhccc
Q 047227 164 AEGEALVIKANGTNGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICAERALASE 243 (485)
Q Consensus 164 ~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~D~a~a~~~~~~~~~~~ 243 (485)
..+|++++. .+++++++||+.+||+... ......++++..++++|++|+|++++.+++
T Consensus 152 ~~~e~~~~~----~gi~~~~lrpg~v~~~~~~-------------~~~~~~~~~~~~~~~i~~~Dva~~~~~~~~----- 209 (236)
T 3e8x_A 152 RLADDELKR----SSLDYTIVRPGPLSNEEST-------------GKVTVSPHFSEITRSITRHDVAKVIAELVD----- 209 (236)
T ss_dssp HHHHHHHHH----SSSEEEEEEECSEECSCCC-------------SEEEEESSCSCCCCCEEHHHHHHHHHHHTT-----
T ss_pred HHHHHHHHH----CCCCEEEEeCCcccCCCCC-------------CeEEeccCCCcccCcEeHHHHHHHHHHHhc-----
Confidence 999999884 7899999999999998632 223344566667899999999999999876
Q ss_pred cchhhccCCcEEEeeCCCCccHHHHHHHHH
Q 047227 244 VTVAEKAAGQAYFVTNMESIKFWEFVSLIL 273 (485)
Q Consensus 244 ~~~~~~~~g~~ynv~~~~~~t~~el~~~i~ 273 (485)
.+...|+.||++++ .+++.|+++.+.
T Consensus 210 ---~~~~~g~~~~v~~~-~~~~~e~~~~i~ 235 (236)
T 3e8x_A 210 ---QQHTIGKTFEVLNG-DTPIAKVVEQLG 235 (236)
T ss_dssp ---CGGGTTEEEEEEEC-SEEHHHHHHTC-
T ss_pred ---CccccCCeEEEeCC-CcCHHHHHHHhc
Confidence 23367899999887 599999988664
|
| >1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=7.7e-30 Score=254.24 Aligned_cols=236 Identities=17% Similarity=0.127 Sum_probs=180.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEec-CCCHHHHHHHhcCCC
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFD-LRHKAQVLQALQGAE 85 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D-l~d~~~l~~~~~~~d 85 (485)
+|+|||||||||||+++++.|+++| ++|++++|...... .......++++++.+| ++|++++.++++++|
T Consensus 5 ~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~R~~~~~~--------~~~l~~~~~v~~v~~D~l~d~~~l~~~~~~~d 75 (352)
T 1xgk_A 5 KKTIAVVGATGRQGASLIRVAAAVG-HHVRAQVHSLKGLI--------AEELQAIPNVTLFQGPLLNNVPLMDTLFEGAH 75 (352)
T ss_dssp CCCEEEESTTSHHHHHHHHHHHHTT-CCEEEEESCSCSHH--------HHHHHTSTTEEEEESCCTTCHHHHHHHHTTCS
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCC-CEEEEEECCCChhh--------HHHHhhcCCcEEEECCccCCHHHHHHHHhcCC
Confidence 5799999999999999999999999 68999988754210 0111112478999999 999999999999999
Q ss_pred EEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcC-CCEEEEecCcc--ccccCCCCcCCCCCCCCCCCCCCchHHHH
Q 047227 86 VVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELK-VKRLIYTSSPS--VVFDGVHGIINGNEALPYPPKHNDFYSAT 162 (485)
Q Consensus 86 ~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~-v~r~V~~SS~~--vy~~~~~~~~~~~e~~~~~~~~~~~Y~~s 162 (485)
+|||+++... .+.|..+ ++++++|++.| ++||||+||.+ .|+ ..+.+.|+.+
T Consensus 76 ~Vi~~a~~~~--------~~~~~~~-~~l~~aa~~~g~v~~~V~~SS~~~~~~~----------------~~~~~~y~~s 130 (352)
T 1xgk_A 76 LAFINTTSQA--------GDEIAIG-KDLADAAKRAGTIQHYIYSSMPDHSLYG----------------PWPAVPMWAP 130 (352)
T ss_dssp EEEECCCSTT--------SCHHHHH-HHHHHHHHHHSCCSEEEEEECCCGGGTS----------------SCCCCTTTHH
T ss_pred EEEEcCCCCC--------cHHHHHH-HHHHHHHHHcCCccEEEEeCCccccccC----------------CCCCccHHHH
Confidence 9999987421 1347776 99999999999 99999999975 221 1234679999
Q ss_pred HHHHHHHHHHHhCCCCceEEEEecCCcccCCCCCChHHHHHH--HHcCCCe-EEecCCCceeecccH-HHHHHHHHHHHH
Q 047227 163 KAEGEALVIKANGTNGLLTCCIRPSSIFGPGDRLLVPSLVAA--ARAGKSK-FIIGDGNNVYDFTYV-ANVAHAHICAER 238 (485)
Q Consensus 163 K~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~--~~~g~~~-~~~g~g~~~~~~i~v-~D~a~a~~~~~~ 238 (485)
|..+|++++. .+++++++||+ +||++.......++.. ...|... .+++++++.++++|+ +|+|++++.+++
T Consensus 131 K~~~E~~~~~----~gi~~~ivrpg-~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~~Dva~ai~~~l~ 205 (352)
T 1xgk_A 131 KFTVENYVRQ----LGLPSTFVYAG-IYNNNFTSLPYPLFQMELMPDGTFEWHAPFDPDIPLPWLDAEHDVGPALLQIFK 205 (352)
T ss_dssp HHHHHHHHHT----SSSCEEEEEEC-EEGGGCBSSSCSSCBEEECTTSCEEEEESSCTTSCEEEECHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH----cCCCEEEEecc-eecCCchhcccccccccccCCCceEEeeccCCCCceeeEecHHHHHHHHHHHHh
Confidence 9999999987 48999999976 7898654321111111 1233322 346778899999999 899999999887
Q ss_pred HhccccchhhccCCcEEEeeCCCCccHHHHHHHHHHHcCCCCCCccCCHH
Q 047227 239 ALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAF 288 (485)
Q Consensus 239 ~~~~~~~~~~~~~g~~ynv~~~~~~t~~el~~~i~~~~g~~~~~~~~p~~ 288 (485)
... ....|++||+++ +.+|+.|+++.+.+.+|++.+...+|.+
T Consensus 206 ~~~------~~~~g~~~~l~~-~~~s~~e~~~~i~~~~G~~~~~~~vp~~ 248 (352)
T 1xgk_A 206 DGP------QKWNGHRIALTF-ETLSPVQVCAAFSRALNRRVTYVQVPKV 248 (352)
T ss_dssp HCH------HHHTTCEEEECS-EEECHHHHHHHHHHHHTSCEEEEECSSC
T ss_pred CCc------hhhCCeEEEEec-CCCCHHHHHHHHHHHHCCCCceEECCHH
Confidence 311 113588999996 6799999999999999998877777744
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.5e-29 Score=233.49 Aligned_cols=219 Identities=14% Similarity=0.130 Sum_probs=146.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCCCEE
Q 047227 8 RLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGAEVV 87 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~d~V 87 (485)
|+||||||||+||+++++.|+++| ++|++++|.+.. ...+. ++++++.+|++|+++ ++++++|+|
T Consensus 1 MkvlVtGatG~iG~~l~~~L~~~g-~~V~~~~R~~~~-----------~~~~~-~~~~~~~~D~~d~~~--~~~~~~d~v 65 (221)
T 3ew7_A 1 MKIGIIGATGRAGSRILEEAKNRG-HEVTAIVRNAGK-----------ITQTH-KDINILQKDIFDLTL--SDLSDQNVV 65 (221)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCSHH-----------HHHHC-SSSEEEECCGGGCCH--HHHTTCSEE
T ss_pred CeEEEEcCCchhHHHHHHHHHhCC-CEEEEEEcCchh-----------hhhcc-CCCeEEeccccChhh--hhhcCCCEE
Confidence 689999999999999999999999 699999997542 11122 689999999999877 888999999
Q ss_pred EEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCccccccCCCCcCCCCCCCCCCCCCCchHHHHHHHHH
Q 047227 88 FHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDFYSATKAEGE 167 (485)
Q Consensus 88 ih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy~~~~~~~~~~~e~~~~~~~~~~~Y~~sK~~~E 167 (485)
||+|+.... ..+.|+.++.+++++|++.+++|+|++||..+|+...... ...++. +..|.+.|+.+|..+|
T Consensus 66 i~~ag~~~~------~~~~~~~~~~~l~~a~~~~~~~~~v~~SS~~~~~~~~~~~-~~~~~~--~~~~~~~y~~~k~~~e 136 (221)
T 3ew7_A 66 VDAYGISPD------EAEKHVTSLDHLISVLNGTVSPRLLVVGGAASLQIDEDGN-TLLESK--GLREAPYYPTARAQAK 136 (221)
T ss_dssp EECCCSSTT------TTTSHHHHHHHHHHHHCSCCSSEEEEECCCC----------------------CCCSCCHHHHHH
T ss_pred EECCcCCcc------ccchHHHHHHHHHHHHHhcCCceEEEEecceEEEcCCCCc-cccccC--CCCCHHHHHHHHHHHH
Confidence 999995321 2467999999999999999999999999988775333221 122222 3456778999999999
Q ss_pred HHHHHHhC-CCCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCceeecccHHHHHHHHHHHHHHhccccch
Q 047227 168 ALVIKANG-TNGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICAERALASEVTV 246 (485)
Q Consensus 168 ~~~~~~~~-~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~ 246 (485)
.+ ..+.+ ..+++++++||+.+|||+... ..+ ...+..+.+.+++ .++++++|+|++++.+++
T Consensus 137 ~~-~~~~~~~~gi~~~ivrp~~v~g~~~~~--~~~---~~~~~~~~~~~~~---~~~i~~~Dva~~~~~~l~-------- 199 (221)
T 3ew7_A 137 QL-EHLKSHQAEFSWTYISPSAMFEPGERT--GDY---QIGKDHLLFGSDG---NSFISMEDYAIAVLDEIE-------- 199 (221)
T ss_dssp HH-HHHHTTTTTSCEEEEECSSCCCCC-----------------------------CCCHHHHHHHHHHHHH--------
T ss_pred HH-HHHHhhccCccEEEEeCcceecCCCcc--Cce---EeccccceecCCC---CceEeHHHHHHHHHHHHh--------
Confidence 97 33333 679999999999999984321 111 1223334444444 379999999999999988
Q ss_pred hhccCCcEEEeeCCCCccHHH
Q 047227 247 AEKAAGQAYFVTNMESIKFWE 267 (485)
Q Consensus 247 ~~~~~g~~ynv~~~~~~t~~e 267 (485)
.+...|+.||++++.+.+..|
T Consensus 200 ~~~~~g~~~~~~~~~~~~~~~ 220 (221)
T 3ew7_A 200 RPNHLNEHFTVAGKLEHHHHH 220 (221)
T ss_dssp SCSCTTSEEECCC--------
T ss_pred CccccCCEEEECCCCcccccc
Confidence 344678999999987766544
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} | Back alignment and structure |
|---|
Probab=99.96 E-value=4e-29 Score=232.86 Aligned_cols=220 Identities=10% Similarity=-0.015 Sum_probs=162.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCCCEE
Q 047227 8 RLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGAEVV 87 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~d~V 87 (485)
|+||||||||+||+++++.|+++| ++|++++|.... ...+..++++++.+|++|+++ ++++++|+|
T Consensus 1 MkilVtGatG~iG~~l~~~L~~~g-~~V~~~~R~~~~-----------~~~~~~~~~~~~~~D~~d~~~--~~~~~~d~v 66 (224)
T 3h2s_A 1 MKIAVLGATGRAGSAIVAEARRRG-HEVLAVVRDPQK-----------AADRLGATVATLVKEPLVLTE--ADLDSVDAV 66 (224)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHH-----------HHHHTCTTSEEEECCGGGCCH--HHHTTCSEE
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCC-CEEEEEEecccc-----------cccccCCCceEEecccccccH--hhcccCCEE
Confidence 689999999999999999999999 699999987542 112234689999999999877 888999999
Q ss_pred EEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCccccccCCCC-cCCCCCCCCCCCCCCchHHHHHHHH
Q 047227 88 FHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVVFDGVHG-IINGNEALPYPPKHNDFYSATKAEG 166 (485)
Q Consensus 88 ih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy~~~~~~-~~~~~e~~~~~~~~~~~Y~~sK~~~ 166 (485)
||+|+..... ...++|+.++.+++++|++.+ +|+|++||.++++..... ....++. ....|.+.|+.+|..+
T Consensus 67 i~~ag~~~~~----~~~~~n~~~~~~l~~a~~~~~-~~~v~~SS~~~~~~~~~~~~~~~~~~--~~~~~~~~y~~sK~~~ 139 (224)
T 3h2s_A 67 VDALSVPWGS----GRGYLHLDFATHLVSLLRNSD-TLAVFILGSASLAMPGADHPMILDFP--ESAASQPWYDGALYQY 139 (224)
T ss_dssp EECCCCCTTS----SCTHHHHHHHHHHHHTCTTCC-CEEEEECCGGGSBCTTCSSCGGGGCC--GGGGGSTTHHHHHHHH
T ss_pred EECCccCCCc----chhhHHHHHHHHHHHHHHHcC-CcEEEEecceeeccCCCCccccccCC--CCCccchhhHHHHHHH
Confidence 9999954221 235789999999999999999 999999998776533222 1122222 1234578899999999
Q ss_pred HHHHHHHhCCCCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCceeecccHHHHHHHHHHHHHHhccccch
Q 047227 167 EALVIKANGTNGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICAERALASEVTV 246 (485)
Q Consensus 167 E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~ 246 (485)
|. +..+.+..+++++++||+.+||++....+. .....+. .++..++++|++|+|++++.+++
T Consensus 140 e~-~~~~~~~~~i~~~ivrp~~v~g~~~~~~~~------~~~~~~~---~~~~~~~~i~~~DvA~~~~~~l~-------- 201 (224)
T 3h2s_A 140 YE-YQFLQMNANVNWIGISPSEAFPSGPATSYV------AGKDTLL---VGEDGQSHITTGNMALAILDQLE-------- 201 (224)
T ss_dssp HH-HHHHTTCTTSCEEEEEECSBCCCCCCCCEE------EESSBCC---CCTTSCCBCCHHHHHHHHHHHHH--------
T ss_pred HH-HHHHHhcCCCcEEEEcCccccCCCcccCce------ecccccc---cCCCCCceEeHHHHHHHHHHHhc--------
Confidence 95 455666789999999999999995432100 1111111 23355789999999999999987
Q ss_pred hhccCCcEEEeeCCCCccHH
Q 047227 247 AEKAAGQAYFVTNMESIKFW 266 (485)
Q Consensus 247 ~~~~~g~~ynv~~~~~~t~~ 266 (485)
.+...|++|++++.+...+.
T Consensus 202 ~~~~~g~~~~~~~~~~~~~~ 221 (224)
T 3h2s_A 202 HPTAIRDRIVVRDADLEHHH 221 (224)
T ss_dssp SCCCTTSEEEEEECC-----
T ss_pred CccccCCEEEEecCcchhcc
Confidence 34467899999987655543
|
| >1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2e-28 Score=232.04 Aligned_cols=230 Identities=20% Similarity=0.155 Sum_probs=172.9
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhc--CCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRY--DMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ 82 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~--G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~ 82 (485)
+++|+||||||+|+||+++++.|+++ | ++|++++|..... .. + ..+++++.+|++|++++.++++
T Consensus 2 ~~~~~ilVtGasG~iG~~l~~~l~~~~~g-~~V~~~~r~~~~~----------~~-~-~~~~~~~~~D~~d~~~~~~~~~ 68 (253)
T 1xq6_A 2 ANLPTVLVTGASGRTGQIVYKKLKEGSDK-FVAKGLVRSAQGK----------EK-I-GGEADVFIGDITDADSINPAFQ 68 (253)
T ss_dssp CSCCEEEEESTTSHHHHHHHHHHHHTTTT-CEEEEEESCHHHH----------HH-T-TCCTTEEECCTTSHHHHHHHHT
T ss_pred CCCCEEEEEcCCcHHHHHHHHHHHhcCCC-cEEEEEEcCCCch----------hh-c-CCCeeEEEecCCCHHHHHHHHc
Confidence 34689999999999999999999999 7 6999998864311 11 1 3568899999999999999999
Q ss_pred CCCEEEEcCCCCCC---------C-------CchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCccccccCCCCcCCCC
Q 047227 83 GAEVVFHMAAPNSS---------I-------NNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVVFDGVHGIINGN 146 (485)
Q Consensus 83 ~~d~Vih~aa~~~~---------~-------~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy~~~~~~~~~~~ 146 (485)
++|+|||+|+.... . .+....+++|+.++.+++++|++.+++||||+||.+++.
T Consensus 69 ~~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~SS~~~~~---------- 138 (253)
T 1xq6_A 69 GIDALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVAGVKHIVVVGSMGGTN---------- 138 (253)
T ss_dssp TCSEEEECCCCCCEECTTCCTTSSCCCCEECCTTCSHHHHTTHHHHHHHHHHHHHTCSEEEEEEETTTTC----------
T ss_pred CCCEEEEeccccccccccccccccccchhhccccccceeeeHHHHHHHHHHHHHcCCCEEEEEcCccCCC----------
Confidence 99999999994321 0 111245799999999999999999999999999987752
Q ss_pred CCCCCCCCCCchHHHHHHHHHHHHHHHhCCCCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCceeecccH
Q 047227 147 EALPYPPKHNDFYSATKAEGEALVIKANGTNGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFTYV 226 (485)
Q Consensus 147 e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v 226 (485)
+..+......+.|+.+|..+|.+++. .+++++++||+.+||+..... .+ ..+....+++ ...+++|+
T Consensus 139 ~~~~~~~~~~~~y~~sK~~~e~~~~~----~~i~~~~vrpg~v~~~~~~~~--~~----~~~~~~~~~~---~~~~~~~~ 205 (253)
T 1xq6_A 139 PDHPLNKLGNGNILVWKRKAEQYLAD----SGTPYTIIRAGGLLDKEGGVR--EL----LVGKDDELLQ---TDTKTVPR 205 (253)
T ss_dssp TTCGGGGGGGCCHHHHHHHHHHHHHT----SSSCEEEEEECEEECSCSSSS--CE----EEESTTGGGG---SSCCEEEH
T ss_pred CCCccccccchhHHHHHHHHHHHHHh----CCCceEEEecceeecCCcchh--hh----hccCCcCCcC---CCCcEEcH
Confidence 11111111224588899999999875 689999999999999864310 00 0011111121 13569999
Q ss_pred HHHHHHHHHHHHHhccccchhhccCCcEEEeeCCC---CccHHHHHHHHHHHcCC
Q 047227 227 ANVAHAHICAERALASEVTVAEKAAGQAYFVTNME---SIKFWEFVSLILEGLGY 278 (485)
Q Consensus 227 ~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~---~~t~~el~~~i~~~~g~ 278 (485)
+|+|++++.+++. +...+++||+++++ ++++.|+++.+.+.+|+
T Consensus 206 ~Dva~~~~~~~~~--------~~~~g~~~~i~~~~~~~~~s~~e~~~~~~~~~g~ 252 (253)
T 1xq6_A 206 ADVAEVCIQALLF--------EEAKNKAFDLGSKPEGTSTPTKDFKALFSQVTSR 252 (253)
T ss_dssp HHHHHHHHHHTTC--------GGGTTEEEEEEECCTTTSCCCCCHHHHHHTCCCC
T ss_pred HHHHHHHHHHHcC--------ccccCCEEEecCCCcCCCCCHHHHHHHHHHHhCC
Confidence 9999999988762 22468899999864 69999999999998886
|
| >2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-28 Score=242.46 Aligned_cols=240 Identities=13% Similarity=0.170 Sum_probs=179.9
Q ss_pred CCCCCCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHH
Q 047227 1 MSGEENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQA 80 (485)
Q Consensus 1 M~~~~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~ 80 (485)
|+...++++||||||||++|+++++.|+++| ++|++++|..... .. .+ ..+...+++++.+|+.|++++.++
T Consensus 5 m~~~~m~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~l~R~~~~~----~~--~~-~~l~~~~v~~v~~Dl~d~~~l~~a 76 (318)
T 2r6j_A 5 MEENGMKSKILIFGGTGYIGNHMVKGSLKLG-HPTYVFTRPNSSK----TT--LL-DEFQSLGAIIVKGELDEHEKLVEL 76 (318)
T ss_dssp ----CCCCCEEEETTTSTTHHHHHHHHHHTT-CCEEEEECTTCSC----HH--HH-HHHHHTTCEEEECCTTCHHHHHHH
T ss_pred ccccCCCCeEEEECCCchHHHHHHHHHHHCC-CcEEEEECCCCch----hh--HH-HHhhcCCCEEEEecCCCHHHHHHH
Confidence 3333334589999999999999999999999 6899999875310 00 01 112245799999999999999999
Q ss_pred hcCCCEEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcC-CCEEEEecCccccccCCCCcCCCCCCCCCCCCC-Cch
Q 047227 81 LQGAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELK-VKRLIYTSSPSVVFDGVHGIINGNEALPYPPKH-NDF 158 (485)
Q Consensus 81 ~~~~d~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~-v~r~V~~SS~~vy~~~~~~~~~~~e~~~~~~~~-~~~ 158 (485)
++++|+|||+++.. ++.++.+++++|++.| ++|||+ | +|+.. .++.. +..| .+.
T Consensus 77 ~~~~d~vi~~a~~~------------~~~~~~~l~~aa~~~g~v~~~v~-S---~~g~~------~~~~~--~~~p~~~~ 132 (318)
T 2r6j_A 77 MKKVDVVISALAFP------------QILDQFKILEAIKVAGNIKRFLP-S---DFGVE------EDRIN--ALPPFEAL 132 (318)
T ss_dssp HTTCSEEEECCCGG------------GSTTHHHHHHHHHHHCCCCEEEC-S---CCSSC------TTTCC--CCHHHHHH
T ss_pred HcCCCEEEECCchh------------hhHHHHHHHHHHHhcCCCCEEEe-e---ccccC------ccccc--CCCCcchh
Confidence 99999999999832 1456789999999998 999985 3 35421 12211 1223 356
Q ss_pred HHHHHHHHHHHHHHHhCCCCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCceeecccHHHHHHHHHHHHH
Q 047227 159 YSATKAEGEALVIKANGTNGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICAER 238 (485)
Q Consensus 159 Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~D~a~a~~~~~~ 238 (485)
| .+|..+|+++++ .+++++++||+.++++ +++.+......++.+.++++++..++|+|++|+|++++.+++
T Consensus 133 y-~sK~~~e~~~~~----~~~~~~~lr~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Dva~~~~~~l~ 203 (318)
T 2r6j_A 133 I-ERKRMIRRAIEE----ANIPYTYVSANCFASY----FINYLLRPYDPKDEITVYGTGEAKFAMNYEQDIGLYTIKVAT 203 (318)
T ss_dssp H-HHHHHHHHHHHH----TTCCBEEEECCEEHHH----HHHHHHCTTCCCSEEEEETTSCCEEEEECHHHHHHHHHHHTT
T ss_pred H-HHHHHHHHHHHh----cCCCeEEEEcceehhh----hhhhhccccCCCCceEEecCCCceeeEeeHHHHHHHHHHHhc
Confidence 8 999999999976 5899999999987764 233333333355667788999999999999999999998876
Q ss_pred HhccccchhhccCCcEEEeeC-CCCccHHHHHHHHHHHcCCCCCCccCCHHH
Q 047227 239 ALASEVTVAEKAAGQAYFVTN-MESIKFWEFVSLILEGLGYQRPRIKIPAFV 289 (485)
Q Consensus 239 ~~~~~~~~~~~~~g~~ynv~~-~~~~t~~el~~~i~~~~g~~~~~~~~p~~~ 289 (485)
. +...++.|++.+ ++.+|+.|+++.+.+.+|.+.+...+|...
T Consensus 204 ~--------~~~~~~~~~~~g~~~~~s~~e~~~~~~~~~g~~~~~~~~~~~~ 247 (318)
T 2r6j_A 204 D--------PRALNRVVIYRPSTNIITQLELISRWEKKIGKKFKKIHVPEEE 247 (318)
T ss_dssp C--------GGGTTEEEECCCGGGEEEHHHHHHHHHHHHTCCCEEEEECHHH
T ss_pred C--------ccccCeEEEecCCCCccCHHHHHHHHHHHhCCCCceeecCHHH
Confidence 2 224477888865 478999999999999999998887888754
|
| >1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.96 E-value=4e-29 Score=244.99 Aligned_cols=246 Identities=13% Similarity=0.110 Sum_probs=181.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCCCE
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGAEV 86 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~d~ 86 (485)
+|+||||||||++|+++++.|+++| ++|++++|..+.. .+ .....+ ..+...+++++.+|+.|++++.++++++|+
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~R~~~~~-~~-~~~~~~-~~~~~~~~~~~~~D~~d~~~l~~~~~~~d~ 79 (313)
T 1qyd_A 4 KSRVLIVGGTGYIGKRIVNASISLG-HPTYVLFRPEVVS-NI-DKVQML-LYFKQLGAKLIEASLDDHQRLVDALKQVDV 79 (313)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTT-CCEEEECCSCCSS-CH-HHHHHH-HHHHTTTCEEECCCSSCHHHHHHHHTTCSE
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhCC-CcEEEEECCCccc-ch-hHHHHH-HHHHhCCeEEEeCCCCCHHHHHHHHhCCCE
Confidence 5789999999999999999999999 6899999875321 00 000001 112356899999999999999999999999
Q ss_pred EEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcC-CCEEEEecCccccccCCCCcCCCCCCCCCCCCC-CchHHHHHH
Q 047227 87 VFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELK-VKRLIYTSSPSVVFDGVHGIINGNEALPYPPKH-NDFYSATKA 164 (485)
Q Consensus 87 Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~-v~r~V~~SS~~vy~~~~~~~~~~~e~~~~~~~~-~~~Y~~sK~ 164 (485)
|||+++.... ..|+.++.+++++|++.| ++|||+ | +|+...... .. +..| .+.| .+|.
T Consensus 80 vi~~a~~~~~--------~~~~~~~~~l~~aa~~~g~v~~~v~-S---~~g~~~~~~-----~~--~~~p~~~~y-~sK~ 139 (313)
T 1qyd_A 80 VISALAGGVL--------SHHILEQLKLVEAIKEAGNIKRFLP-S---EFGMDPDIM-----EH--ALQPGSITF-IDKR 139 (313)
T ss_dssp EEECCCCSSS--------STTTTTHHHHHHHHHHSCCCSEEEC-S---CCSSCTTSC-----CC--CCSSTTHHH-HHHH
T ss_pred EEECCccccc--------hhhHHHHHHHHHHHHhcCCCceEEe-c---CCcCCcccc-----cc--CCCCCcchH-HHHH
Confidence 9999984332 136778899999999999 999995 3 454221110 11 1233 4578 9999
Q ss_pred HHHHHHHHHhCCCCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCceeecccHHHHHHHHHHHHHHhcccc
Q 047227 165 EGEALVIKANGTNGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICAERALASEV 244 (485)
Q Consensus 165 ~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~D~a~a~~~~~~~~~~~~ 244 (485)
.+|+++++ .+++++++||+.++|+....+..........++.+.++++++..++++|++|+|++++.++..
T Consensus 140 ~~e~~~~~----~g~~~~ilrp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~Dva~~~~~~l~~----- 210 (313)
T 1qyd_A 140 KVRRAIEA----ASIPYTYVSSNMFAGYFAGSLAQLDGHMMPPRDKVLIYGDGNVKGIWVDEDDVGTYTIKSIDD----- 210 (313)
T ss_dssp HHHHHHHH----TTCCBCEEECCEEHHHHTTTSSCTTCCSSCCSSEECCBTTSCSEEEEECHHHHHHHHHHHTTC-----
T ss_pred HHHHHHHh----cCCCeEEEEeceeccccccccccccccccCCCCeEEEeCCCCceEEEEEHHHHHHHHHHHHhC-----
Confidence 99999976 589999999999888532211110000112444566788899999999999999999988762
Q ss_pred chhhccCCcEEEeeCC-CCccHHHHHHHHHHHcCCCCCCccCCHH
Q 047227 245 TVAEKAAGQAYFVTNM-ESIKFWEFVSLILEGLGYQRPRIKIPAF 288 (485)
Q Consensus 245 ~~~~~~~g~~ynv~~~-~~~t~~el~~~i~~~~g~~~~~~~~p~~ 288 (485)
+...++.|+++++ +.+|+.|+++.+.+.+|++.+...+|..
T Consensus 211 ---~~~~~~~~~~~g~~~~~s~~e~~~~~~~~~g~~~~~~~~~~~ 252 (313)
T 1qyd_A 211 ---PQTLNKTMYIRPPMNILSQKEVIQIWERLSEQNLDKIYISSQ 252 (313)
T ss_dssp ---GGGSSSEEECCCGGGEEEHHHHHHHHHHHHTCCCEECCBCSH
T ss_pred ---cccCCceEEEeCCCCccCHHHHHHHHHHhcCCCCceEECCHH
Confidence 2245778888765 7899999999999999998887777754
|
| >3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri} | Back alignment and structure |
|---|
Probab=99.95 E-value=5.4e-28 Score=237.87 Aligned_cols=240 Identities=13% Similarity=0.154 Sum_probs=180.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCCC
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGAE 85 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~d 85 (485)
++|+||||||||++|+++++.|+++| ++|++++|.......+... ..+. .+...+++++.+|+.|++++.++++++|
T Consensus 3 ~~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~R~~~~~~~~~~~-~~l~-~~~~~~v~~v~~D~~d~~~l~~a~~~~d 79 (321)
T 3c1o_A 3 HMEKIIIYGGTGYIGKFMVRASLSFS-HPTFIYARPLTPDSTPSSV-QLRE-EFRSMGVTIIEGEMEEHEKMVSVLKQVD 79 (321)
T ss_dssp -CCCEEEETTTSTTHHHHHHHHHHTT-CCEEEEECCCCTTCCHHHH-HHHH-HHHHTTCEEEECCTTCHHHHHHHHTTCS
T ss_pred cccEEEEEcCCchhHHHHHHHHHhCC-CcEEEEECCcccccChHHH-HHHH-HhhcCCcEEEEecCCCHHHHHHHHcCCC
Confidence 35789999999999999999999999 6899999875110000000 0011 1234679999999999999999999999
Q ss_pred EEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcC-CCEEEEecCccccccCCCCcCCCCCCCCCCCCC-CchHHHHH
Q 047227 86 VVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELK-VKRLIYTSSPSVVFDGVHGIINGNEALPYPPKH-NDFYSATK 163 (485)
Q Consensus 86 ~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~-v~r~V~~SS~~vy~~~~~~~~~~~e~~~~~~~~-~~~Y~~sK 163 (485)
+|||+++.. .+.++.+++++|++.| ++|||+ | +|+... ++.. +..| .+.| .+|
T Consensus 80 ~vi~~a~~~------------~~~~~~~l~~aa~~~g~v~~~v~-S---~~g~~~------~~~~--~~~p~~~~y-~sK 134 (321)
T 3c1o_A 80 IVISALPFP------------MISSQIHIINAIKAAGNIKRFLP-S---DFGCEE------DRIK--PLPPFESVL-EKK 134 (321)
T ss_dssp EEEECCCGG------------GSGGGHHHHHHHHHHCCCCEEEC-S---CCSSCG------GGCC--CCHHHHHHH-HHH
T ss_pred EEEECCCcc------------chhhHHHHHHHHHHhCCccEEec-c---ccccCc------cccc--cCCCcchHH-HHH
Confidence 999999832 1566789999999999 999983 3 454211 1111 1223 4579 999
Q ss_pred HHHHHHHHHHhCCCCceEEEEecCCcccCCCCCChHHHHH---HHHcCCCeEEecCCCceeecccHHHHHHHHHHHHHHh
Q 047227 164 AEGEALVIKANGTNGLLTCCIRPSSIFGPGDRLLVPSLVA---AARAGKSKFIIGDGNNVYDFTYVANVAHAHICAERAL 240 (485)
Q Consensus 164 ~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~~~~~~~~~---~~~~g~~~~~~g~g~~~~~~i~v~D~a~a~~~~~~~~ 240 (485)
..+|++++. .+++++++||+.++|+. .+.+.. ....++.+.++++++..++|+|++|+|++++.++..
T Consensus 135 ~~~e~~~~~----~~~~~~~lrp~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Dva~~~~~~l~~- 205 (321)
T 3c1o_A 135 RIIRRAIEA----AALPYTYVSANCFGAYF----VNYLLHPSPHPNRNDDIVIYGTGETKFVLNYEEDIAKYTIKVACD- 205 (321)
T ss_dssp HHHHHHHHH----HTCCBEEEECCEEHHHH----HHHHHCCCSSCCTTSCEEEETTSCCEEEEECHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHH----cCCCeEEEEeceecccc----ccccccccccccccCceEEecCCCcceeEeeHHHHHHHHHHHHhC-
Confidence 999999976 47899999999988752 222221 113455677888999999999999999999998872
Q ss_pred ccccchhhccCCcEEEeeC-CCCccHHHHHHHHHHHcCCCCCCccCCHHH
Q 047227 241 ASEVTVAEKAAGQAYFVTN-MESIKFWEFVSLILEGLGYQRPRIKIPAFV 289 (485)
Q Consensus 241 ~~~~~~~~~~~g~~ynv~~-~~~~t~~el~~~i~~~~g~~~~~~~~p~~~ 289 (485)
+...|+.|++.+ ++.+|+.|+++.+.+.+|.+.+...+|...
T Consensus 206 -------~~~~g~~~~~~g~~~~~t~~e~~~~~~~~~g~~~~~~~~~~~~ 248 (321)
T 3c1o_A 206 -------PRCCNRIVIYRPPKNIISQNELISLWEAKSGLSFKKVHMPDEQ 248 (321)
T ss_dssp -------GGGTTEEEECCCGGGEEEHHHHHHHHHHHHTSCCCEEEECHHH
T ss_pred -------ccccCeEEEEeCCCCcccHHHHHHHHHHHcCCcceeeeCCHHH
Confidence 234578888876 489999999999999999998888888653
|
| >2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.95 E-value=1e-28 Score=228.50 Aligned_cols=205 Identities=18% Similarity=0.169 Sum_probs=162.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCC-ceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCC
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDM-FSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGA 84 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 84 (485)
++|+||||||+|+||+++++.|+++|+ ++|++++|.... ..++++++.+|++|++++.+++ +
T Consensus 4 ~~~~vlVtGatG~iG~~l~~~l~~~g~~~~V~~~~r~~~~---------------~~~~~~~~~~D~~~~~~~~~~~--~ 66 (215)
T 2a35_A 4 TPKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALA---------------EHPRLDNPVGPLAELLPQLDGS--I 66 (215)
T ss_dssp CCCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCC---------------CCTTEECCBSCHHHHGGGCCSC--C
T ss_pred CCceEEEECCCcHHHHHHHHHHHhCCCCCeEEEEeCCCcc---------------cCCCceEEeccccCHHHHHHhh--h
Confidence 458999999999999999999999995 289999887542 1247888999999988887777 9
Q ss_pred CEEEEcCCCCC-CCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCccccccCCCCcCCCCCCCCCCCCCCchHHHHH
Q 047227 85 EVVFHMAAPNS-SINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDFYSATK 163 (485)
Q Consensus 85 d~Vih~aa~~~-~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy~~~~~~~~~~~e~~~~~~~~~~~Y~~sK 163 (485)
|+|||+|+... ...++..++++|+.++.+++++|++.++++|||+||..+|+ .+.+.|+.+|
T Consensus 67 d~vi~~a~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss~~~~~-----------------~~~~~y~~sK 129 (215)
T 2a35_A 67 DTAFCCLGTTIKEAGSEEAFRAVDFDLPLAVGKRALEMGARHYLVVSALGADA-----------------KSSIFYNRVK 129 (215)
T ss_dssp SEEEECCCCCHHHHSSHHHHHHHHTHHHHHHHHHHHHTTCCEEEEECCTTCCT-----------------TCSSHHHHHH
T ss_pred cEEEECeeeccccCCCHHHHHHhhHHHHHHHHHHHHHcCCCEEEEECCcccCC-----------------CCccHHHHHH
Confidence 99999999433 23567788999999999999999999999999999998873 2457899999
Q ss_pred HHHHHHHHHHhCCCCce-EEEEecCCcccCCCCC-ChHHHHHHHHcCCCeEEecCCCceeecccHHHHHHHHHHHHHHhc
Q 047227 164 AEGEALVIKANGTNGLL-TCCIRPSSIFGPGDRL-LVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICAERALA 241 (485)
Q Consensus 164 ~~~E~~~~~~~~~~g~~-~~ilRp~~v~Gp~~~~-~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~D~a~a~~~~~~~~~ 241 (485)
..+|++++. .+++ ++++||+.+|||+... ++..+ . +.... .++ ..++++|++|+|++++.+++.
T Consensus 130 ~~~e~~~~~----~~~~~~~~vrp~~v~g~~~~~~~~~~~----~-~~~~~-~~~--~~~~~i~~~Dva~~~~~~~~~-- 195 (215)
T 2a35_A 130 GELEQALQE----QGWPQLTIARPSLLFGPREEFRLAEIL----A-APIAR-ILP--GKYHGIEACDLARALWRLALE-- 195 (215)
T ss_dssp HHHHHHHTT----SCCSEEEEEECCSEESTTSCEEGGGGT----T-CCCC-------CHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHH----cCCCeEEEEeCceeeCCCCcchHHHHH----H-Hhhhh-ccC--CCcCcEeHHHHHHHHHHHHhc--
Confidence 999999876 4898 9999999999997652 22211 1 22112 233 267999999999999998762
Q ss_pred cccchhhccCCcEEEeeCCCCccHH
Q 047227 242 SEVTVAEKAAGQAYFVTNMESIKFW 266 (485)
Q Consensus 242 ~~~~~~~~~~g~~ynv~~~~~~t~~ 266 (485)
..++.||+++++.+++.
T Consensus 196 --------~~~~~~~i~~~~~~~~~ 212 (215)
T 2a35_A 196 --------EGKGVRFVESDELRKLG 212 (215)
T ss_dssp --------CCSEEEEEEHHHHHHHH
T ss_pred --------CCCCceEEcHHHHHHhh
Confidence 23789999987655543
|
| >1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.8e-26 Score=211.64 Aligned_cols=202 Identities=14% Similarity=0.212 Sum_probs=155.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCCCEE
Q 047227 8 RLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGAEVV 87 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~d~V 87 (485)
|+||||||||+||+++++.|+++| ++|++++|.+..... ....+++++.+|+.|++++.++++++|+|
T Consensus 4 ~~ilVtGatG~iG~~l~~~l~~~g-~~V~~~~r~~~~~~~-----------~~~~~~~~~~~D~~~~~~~~~~~~~~d~v 71 (206)
T 1hdo_A 4 KKIAIFGATGQTGLTTLAQAVQAG-YEVTVLVRDSSRLPS-----------EGPRPAHVVVGDVLQAADVDKTVAGQDAV 71 (206)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESCGGGSCS-----------SSCCCSEEEESCTTSHHHHHHHHTTCSEE
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCC-CeEEEEEeChhhccc-----------ccCCceEEEEecCCCHHHHHHHHcCCCEE
Confidence 799999999999999999999999 699999987542211 11357899999999999999999999999
Q ss_pred EEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCccccccCCCCcCCCCCCCCCCCCCCchHHHHHHHHH
Q 047227 88 FHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDFYSATKAEGE 167 (485)
Q Consensus 88 ih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy~~~~~~~~~~~e~~~~~~~~~~~Y~~sK~~~E 167 (485)
||+++..... ++ .++|+.++.+++++|++.++++|||+||.++|++... . ..+.+.|+.+|..+|
T Consensus 72 i~~a~~~~~~-~~---~~~n~~~~~~~~~~~~~~~~~~~v~~Ss~~~~~~~~~--------~---~~~~~~y~~~K~~~e 136 (206)
T 1hdo_A 72 IVLLGTRNDL-SP---TTVMSEGARNIVAAMKAHGVDKVVACTSAFLLWDPTK--------V---PPRLQAVTDDHIRMH 136 (206)
T ss_dssp EECCCCTTCC-SC---CCHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSCTTC--------S---CGGGHHHHHHHHHHH
T ss_pred EECccCCCCC-Cc---cchHHHHHHHHHHHHHHhCCCeEEEEeeeeeccCccc--------c---cccchhHHHHHHHHH
Confidence 9999954331 22 3589999999999999999999999999998853211 0 115678999999999
Q ss_pred HHHHHHhCCCCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCceeecccHHHHHHHHHHHHHHhccccchh
Q 047227 168 ALVIKANGTNGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICAERALASEVTVA 247 (485)
Q Consensus 168 ~~~~~~~~~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~ 247 (485)
++++. .+++++++||+.+ +++... +......++ ....+++|++|+|++++.+++ .
T Consensus 137 ~~~~~----~~i~~~~lrp~~~-~~~~~~-----------~~~~~~~~~-~~~~~~i~~~Dva~~~~~~~~--------~ 191 (206)
T 1hdo_A 137 KVLRE----SGLKYVAVMPPHI-GDQPLT-----------GAYTVTLDG-RGPSRVISKHDLGHFMLRCLT--------T 191 (206)
T ss_dssp HHHHH----TCSEEEEECCSEE-ECCCCC-----------SCCEEESSS-CSSCSEEEHHHHHHHHHHTTS--------C
T ss_pred HHHHh----CCCCEEEEeCCcc-cCCCCC-----------cceEecccC-CCCCCccCHHHHHHHHHHHhc--------C
Confidence 99965 6899999999997 443210 111111111 111589999999999998876 2
Q ss_pred hccCCcEEEeeCCC
Q 047227 248 EKAAGQAYFVTNME 261 (485)
Q Consensus 248 ~~~~g~~ynv~~~~ 261 (485)
+...|+.|++++++
T Consensus 192 ~~~~g~~~~i~~g~ 205 (206)
T 1hdo_A 192 DEYDGHSTYPSHQY 205 (206)
T ss_dssp STTTTCEEEEECCC
T ss_pred ccccccceeeeccc
Confidence 33568999999874
|
| >2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa} | Back alignment and structure |
|---|
Probab=99.94 E-value=6.9e-27 Score=228.37 Aligned_cols=242 Identities=18% Similarity=0.156 Sum_probs=179.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCC-ccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCCC
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEP-HEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGAE 85 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~d 85 (485)
+|+||||||||+||+++++.|+++| ++|++++|..+....+ ... ..+ ..+...+++++.+|+.|++++.++++++|
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~R~~~~~~~~~~~~-~~~-~~l~~~~v~~v~~D~~d~~~l~~~~~~~d 78 (307)
T 2gas_A 2 ENKILILGPTGAIGRHIVWASIKAG-NPTYALVRKTITAANPETKE-ELI-DNYQSLGVILLEGDINDHETLVKAIKQVD 78 (307)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHHT-CCEEEEECCSCCSSCHHHHH-HHH-HHHHHTTCEEEECCTTCHHHHHHHHTTCS
T ss_pred CcEEEEECCCchHHHHHHHHHHhCC-CcEEEEECCCcccCChHHHH-HHH-HHHHhCCCEEEEeCCCCHHHHHHHHhCCC
Confidence 5789999999999999999999999 5899999875211111 110 001 11234679999999999999999999999
Q ss_pred EEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcC-CCEEEEecCccccccCCCCcCCCCCCCCCCCCC-CchHHHHH
Q 047227 86 VVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELK-VKRLIYTSSPSVVFDGVHGIINGNEALPYPPKH-NDFYSATK 163 (485)
Q Consensus 86 ~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~-v~r~V~~SS~~vy~~~~~~~~~~~e~~~~~~~~-~~~Y~~sK 163 (485)
+|||+++... +.++.+++++|++.| ++|||+ | +|+... ++.. +..| .+.| .+|
T Consensus 79 ~vi~~a~~~~------------~~~~~~l~~aa~~~g~v~~~v~-S---~~g~~~------~~~~--~~~p~~~~y-~sK 133 (307)
T 2gas_A 79 IVICAAGRLL------------IEDQVKIIKAIKEAGNVKKFFP-S---EFGLDV------DRHD--AVEPVRQVF-EEK 133 (307)
T ss_dssp EEEECSSSSC------------GGGHHHHHHHHHHHCCCSEEEC-S---CCSSCT------TSCC--CCTTHHHHH-HHH
T ss_pred EEEECCcccc------------cccHHHHHHHHHhcCCceEEee-c---ccccCc------cccc--CCCcchhHH-HHH
Confidence 9999998432 456789999999998 999984 3 454211 1211 1233 4578 999
Q ss_pred HHHHHHHHHHhCCCCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCceeecccHHHHHHHHHHHHHHhccc
Q 047227 164 AEGEALVIKANGTNGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICAERALASE 243 (485)
Q Consensus 164 ~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~D~a~a~~~~~~~~~~~ 243 (485)
..+|++++. .+++++++||+.++++....+... ......++.+.++++++..++++|++|+|++++.++..
T Consensus 134 ~~~e~~~~~----~~i~~~~lrp~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~Dva~~~~~~l~~---- 204 (307)
T 2gas_A 134 ASIRRVIEA----EGVPYTYLCCHAFTGYFLRNLAQL-DATDPPRDKVVILGDGNVKGAYVTEADVGTFTIRAAND---- 204 (307)
T ss_dssp HHHHHHHHH----HTCCBEEEECCEETTTTGGGTTCT-TCSSCCSSEEEEETTSCSEEEEECHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHH----cCCCeEEEEcceeecccccccccc-ccccCCCCeEEEecCCCcceEEeeHHHHHHHHHHHHcC----
Confidence 999999976 478999999999888642211110 00112445567788999999999999999999998762
Q ss_pred cchhhccCCcEEEeeCC-CCccHHHHHHHHHHHcCCCCCCccCCHHH
Q 047227 244 VTVAEKAAGQAYFVTNM-ESIKFWEFVSLILEGLGYQRPRIKIPAFV 289 (485)
Q Consensus 244 ~~~~~~~~g~~ynv~~~-~~~t~~el~~~i~~~~g~~~~~~~~p~~~ 289 (485)
+...++.|++.++ +.+|+.|+++.+.+.+|++.+...+|...
T Consensus 205 ----~~~~~~~~~~~~~~~~~s~~e~~~~~~~~~g~~~~~~~~~~~~ 247 (307)
T 2gas_A 205 ----PNTLNKAVHIRLPKNYLTQNEVIALWEKKIGKTLEKTYVSEEQ 247 (307)
T ss_dssp ----GGGTTEEEECCCGGGEEEHHHHHHHHHHHHTSCCEEEEECHHH
T ss_pred ----ccccCceEEEeCCCCcCCHHHHHHHHHHHhCCCCceeecCHHH
Confidence 2245778888764 78999999999999999988877777643
|
| >1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.94 E-value=3.1e-27 Score=230.98 Aligned_cols=241 Identities=17% Similarity=0.222 Sum_probs=179.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCCCE
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGAEV 86 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~d~ 86 (485)
+|+||||||||++|+++++.|+++| ++|++++|.......+... . ....+...+++++.+|++|++++.++++++|+
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~l~R~~~~~~~~~~~-~-~~~~l~~~~v~~v~~D~~d~~~l~~~~~~~d~ 80 (308)
T 1qyc_A 4 RSRILLIGATGYIGRHVAKASLDLG-HPTFLLVRESTASSNSEKA-Q-LLESFKASGANIVHGSIDDHASLVEAVKNVDV 80 (308)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTT-CCEEEECCCCCTTTTHHHH-H-HHHHHHTTTCEEECCCTTCHHHHHHHHHTCSE
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhCC-CCEEEEECCcccccCHHHH-H-HHHHHHhCCCEEEEeccCCHHHHHHHHcCCCE
Confidence 5789999999999999999999999 5899998875421001000 0 01123356899999999999999999999999
Q ss_pred EEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcC-CCEEEEecCccccccCCCCcCCCCCCCCCCCCC-CchHHHHHH
Q 047227 87 VFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELK-VKRLIYTSSPSVVFDGVHGIINGNEALPYPPKH-NDFYSATKA 164 (485)
Q Consensus 87 Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~-v~r~V~~SS~~vy~~~~~~~~~~~e~~~~~~~~-~~~Y~~sK~ 164 (485)
|||+++.. ++.++.+++++|++.| ++|||+ | +|+.. .++.. +..| .+.| .+|.
T Consensus 81 vi~~a~~~------------~~~~~~~l~~aa~~~g~v~~~v~-S---~~g~~------~~~~~--~~~p~~~~y-~sK~ 135 (308)
T 1qyc_A 81 VISTVGSL------------QIESQVNIIKAIKEVGTVKRFFP-S---EFGND------VDNVH--AVEPAKSVF-EVKA 135 (308)
T ss_dssp EEECCCGG------------GSGGGHHHHHHHHHHCCCSEEEC-S---CCSSC------TTSCC--CCTTHHHHH-HHHH
T ss_pred EEECCcch------------hhhhHHHHHHHHHhcCCCceEee-c---ccccC------ccccc--cCCcchhHH-HHHH
Confidence 99999832 2456789999999999 999984 4 34321 11211 1233 4578 9999
Q ss_pred HHHHHHHHHhCCCCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCceeecccHHHHHHHHHHHHHHhcccc
Q 047227 165 EGEALVIKANGTNGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICAERALASEV 244 (485)
Q Consensus 165 ~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~D~a~a~~~~~~~~~~~~ 244 (485)
.+|++++. .+++++++||+.++|+....+... ......++.+.++++++..++|+|++|+|++++.+++.
T Consensus 136 ~~e~~~~~----~~~~~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~Dva~~~~~~l~~----- 205 (308)
T 1qyc_A 136 KVRRAIEA----EGIPYTYVSSNCFAGYFLRSLAQA-GLTAPPRDKVVILGDGNARVVFVKEEDIGTFTIKAVDD----- 205 (308)
T ss_dssp HHHHHHHH----HTCCBEEEECCEEHHHHTTTTTCT-TCSSCCSSEEEEETTSCCEEEEECHHHHHHHHHTTSSC-----
T ss_pred HHHHHHHh----cCCCeEEEEeceeccccccccccc-cccCCCCCceEEecCCCceEEEecHHHHHHHHHHHHhC-----
Confidence 99999986 478999999999988533211110 00112455677889999999999999999999987652
Q ss_pred chhhccCCcEEEeeCC-CCccHHHHHHHHHHHcCCCCCCccCCHH
Q 047227 245 TVAEKAAGQAYFVTNM-ESIKFWEFVSLILEGLGYQRPRIKIPAF 288 (485)
Q Consensus 245 ~~~~~~~g~~ynv~~~-~~~t~~el~~~i~~~~g~~~~~~~~p~~ 288 (485)
+...++.|++.++ +.+|+.|+++.+.+.+|++.+...+|..
T Consensus 206 ---~~~~~~~~~~~g~~~~~s~~e~~~~~~~~~g~~~~~~~~~~~ 247 (308)
T 1qyc_A 206 ---PRTLNKTLYLRLPANTLSLNELVALWEKKIDKTLEKAYVPEE 247 (308)
T ss_dssp ---GGGTTEEEECCCGGGEEEHHHHHHHHHHHTTSCCEEEEECHH
T ss_pred ---ccccCeEEEEeCCCCccCHHHHHHHHHHHhCCCCceEeCCHH
Confidence 2245788888764 7899999999999999999887777764
|
| >2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A | Back alignment and structure |
|---|
Probab=99.94 E-value=2.6e-26 Score=216.47 Aligned_cols=196 Identities=16% Similarity=0.074 Sum_probs=152.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCc-eEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCC
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMF-SVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGA 84 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 84 (485)
++|+||||||+|+||+++++.|+++|+. +|++++|....... ...+++.++.+|++|++++.++++++
T Consensus 17 ~~~~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~r~~~~~~~-----------~~~~~~~~~~~D~~d~~~~~~~~~~~ 85 (242)
T 2bka_A 17 QNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDE-----------EAYKNVNQEVVDFEKLDDYASAFQGH 85 (242)
T ss_dssp TCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCS-----------GGGGGCEEEECCGGGGGGGGGGGSSC
T ss_pred cCCeEEEECCCcHHHHHHHHHHHcCCCCCEEEEEEcCCCCccc-----------cccCCceEEecCcCCHHHHHHHhcCC
Confidence 4689999999999999999999999932 89999987542111 01236889999999999999999999
Q ss_pred CEEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCccccccCCCCcCCCCCCCCCCCCCCchHHHHHH
Q 047227 85 EVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDFYSATKA 164 (485)
Q Consensus 85 d~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy~~~~~~~~~~~e~~~~~~~~~~~Y~~sK~ 164 (485)
|+|||+|+......+++..+++|+.++.+++++|++.++++||++||.++|+ .+.+.|+.+|.
T Consensus 86 d~vi~~ag~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~iv~~SS~~~~~-----------------~~~~~Y~~sK~ 148 (242)
T 2bka_A 86 DVGFCCLGTTRGKAGAEGFVRVDRDYVLKSAELAKAGGCKHFNLLSSKGADK-----------------SSNFLYLQVKG 148 (242)
T ss_dssp SEEEECCCCCHHHHHHHHHHHHHTHHHHHHHHHHHHTTCCEEEEECCTTCCT-----------------TCSSHHHHHHH
T ss_pred CEEEECCCcccccCCcccceeeeHHHHHHHHHHHHHCCCCEEEEEccCcCCC-----------------CCcchHHHHHH
Confidence 9999999954333456778899999999999999999999999999998873 13468999999
Q ss_pred HHHHHHHHHhCCCCc-eEEEEecCCcccCCCCCCh-HHHHHHHHcCCCeEEecCCCceeecccHHHHHHHHHHHHH
Q 047227 165 EGEALVIKANGTNGL-LTCCIRPSSIFGPGDRLLV-PSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICAER 238 (485)
Q Consensus 165 ~~E~~~~~~~~~~g~-~~~ilRp~~v~Gp~~~~~~-~~~~~~~~~g~~~~~~g~g~~~~~~i~v~D~a~a~~~~~~ 238 (485)
.+|.+++.+ ++ +++++||+.+|||...... ..+........+ ..++ ...+++++|+|++++.++.
T Consensus 149 ~~e~~~~~~----~~~~~~~vrpg~v~~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~dva~~~~~~~~ 215 (242)
T 2bka_A 149 EVEAKVEEL----KFDRYSVFRPGVLLCDRQESRPGEWLVRKFFGSLP-DSWA----SGHSVPVVTVVRAMLNNVV 215 (242)
T ss_dssp HHHHHHHTT----CCSEEEEEECCEEECTTGGGSHHHHHHHHHHCSCC-TTGG----GGTEEEHHHHHHHHHHHHT
T ss_pred HHHHHHHhc----CCCCeEEEcCceecCCCCCCcHHHHHHHHhhcccC-cccc----CCcccCHHHHHHHHHHHHh
Confidence 999999873 56 6999999999999754322 233333332221 1111 2358999999999998875
|
| >2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP} | Back alignment and structure |
|---|
Probab=99.93 E-value=5e-26 Score=215.98 Aligned_cols=229 Identities=19% Similarity=0.110 Sum_probs=163.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc----C
Q 047227 8 RLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ----G 83 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~----~ 83 (485)
|+||||||+|+||+++++.|+++| ++|++++|..... . . .+.+|++|.+++.++++ +
T Consensus 2 k~vlVtGasg~iG~~l~~~L~~~g-~~V~~~~r~~~~~-----~---------~----~~~~D~~~~~~~~~~~~~~~~~ 62 (255)
T 2dkn_A 2 SVIAITGSASGIGAALKELLARAG-HTVIGIDRGQADI-----E---------A----DLSTPGGRETAVAAVLDRCGGV 62 (255)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSSSSE-----E---------C----CTTSHHHHHHHHHHHHHHHTTC
T ss_pred cEEEEeCCCcHHHHHHHHHHHhCC-CEEEEEeCChhHc-----c---------c----cccCCcccHHHHHHHHHHcCCC
Confidence 689999999999999999999999 6999999865411 0 0 15689999999988886 7
Q ss_pred CCEEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhc----CCCEEEEecCccccccCCCCcCC------CCCCCCC--
Q 047227 84 AEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAEL----KVKRLIYTSSPSVVFDGVHGIIN------GNEALPY-- 151 (485)
Q Consensus 84 ~d~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~----~v~r~V~~SS~~vy~~~~~~~~~------~~e~~~~-- 151 (485)
+|+|||+|+......+++..+++|+.++.++++++.+. +.+|+|++||..+|+........ .+++.+.
T Consensus 63 ~d~vi~~Ag~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (255)
T 2dkn_A 63 LDGLVCCAGVGVTAANSGLVVAVNYFGVSALLDGLAEALSRGQQPAAVIVGSIAATQPGAAELPMVEAMLAGDEARAIEL 142 (255)
T ss_dssp CSEEEECCCCCTTSSCHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGGSTTGGGCHHHHHHHHTCHHHHHHH
T ss_pred ccEEEECCCCCCcchhHHHHHHHHhHHHHHHHHHHHHHhhhcCCceEEEEeccccccccccccchhhhhcccchhhhhhh
Confidence 99999999965545678889999999999999987765 56899999999998532111000 0010000
Q ss_pred ---CCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCceeeccc
Q 047227 152 ---PPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFTY 225 (485)
Q Consensus 152 ---~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~ 225 (485)
+..+.+.|+.+|...|.+++.++.+ .|++++++||+.++|+... .+......+....... + ...++++
T Consensus 143 ~~~~~~~~~~Y~~sK~a~~~~~~~~~~~~~~~gi~v~~v~pg~v~~~~~~----~~~~~~~~~~~~~~~~-~-~~~~~~~ 216 (255)
T 2dkn_A 143 AEQQGQTHLAYAGSKYAVTCLARRNVVDWAGRGVRLNVVAPGAVETPLLQ----ASKADPRYGESTRRFV-A-PLGRGSE 216 (255)
T ss_dssp HHHHCCHHHHHHHHHHHHHHHHHHTHHHHHHTTCEEEEEEECCBCSHHHH----HHHHCTTTHHHHHSCC-C-TTSSCBC
T ss_pred ccccCCcchhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEcCCcccchhhh----hcccchhhHHHHHHHH-H-HhcCCCC
Confidence 0135678999999999999987755 6899999999999987421 1111000000000000 2 4457999
Q ss_pred HHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCCCccHHH
Q 047227 226 VANVAHAHICAERALASEVTVAEKAAGQAYFVTNMESIKFWE 267 (485)
Q Consensus 226 v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~~t~~e 267 (485)
++|+|++++.++.... ....|+.|+++++..++++|
T Consensus 217 ~~dva~~~~~l~~~~~------~~~~G~~~~v~gg~~~~~~e 252 (255)
T 2dkn_A 217 PREVAEAIAFLLGPQA------SFIHGSVLFVDGGMDALMRA 252 (255)
T ss_dssp HHHHHHHHHHHHSGGG------TTCCSCEEEESTTHHHHHCT
T ss_pred HHHHHHHHHHHhCCCc------ccceeeEEEecCCeEeeeec
Confidence 9999999998876311 12568999999987666544
|
| >2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=3.8e-24 Score=205.91 Aligned_cols=236 Identities=19% Similarity=0.221 Sum_probs=175.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc---
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ--- 82 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 82 (485)
++|++|||||+|+||+++++.|+++| ++|++++|...... . .........++.++.+|++|++++.++++
T Consensus 15 ~~k~vlITGasggiG~~~a~~l~~~G-~~V~~~~r~~~~~~----~--~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 87 (278)
T 2bgk_A 15 QDKVAIITGGAGGIGETTAKLFVRYG-AKVVIADIADDHGQ----K--VCNNIGSPDVISFVHCDVTKDEDVRNLVDTTI 87 (278)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHH----H--HHHHHCCTTTEEEEECCTTCHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEcCChhHHH----H--HHHHhCCCCceEEEECCCCCHHHHHHHHHHHH
Confidence 46899999999999999999999999 68999988643110 0 11111112378999999999999888876
Q ss_pred ----CCCEEEEcCCCCCC---------CCchhhhHHHHHHHHHHHHHHHHhc----CCCEEEEecCccccccCCCCcCCC
Q 047227 83 ----GAEVVFHMAAPNSS---------INNHKLHHSVNVEGTKNVIDACAEL----KVKRLIYTSSPSVVFDGVHGIING 145 (485)
Q Consensus 83 ----~~d~Vih~aa~~~~---------~~~~~~~~~~nv~~t~~ll~a~~~~----~v~r~V~~SS~~vy~~~~~~~~~~ 145 (485)
++|+|||+||.... .+++...+++|+.++.++++++... +.+++|++||..+|...
T Consensus 88 ~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~------- 160 (278)
T 2bgk_A 88 AKHGKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMIPAKKGSIVFTASISSFTAG------- 160 (278)
T ss_dssp HHHSCCCEEEECCCCCCSSCSSTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHGGGTCEEEEEECCGGGTCCC-------
T ss_pred HHcCCCCEEEECCcccCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCCeEEEEeeccccCCC-------
Confidence 69999999994321 1345678999999999999988763 56799999998887421
Q ss_pred CCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCC---hHHHHHHHHcCCCeEEecCCCc
Q 047227 146 NEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLL---VPSLVAAARAGKSKFIIGDGNN 219 (485)
Q Consensus 146 ~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~---~~~~~~~~~~g~~~~~~g~g~~ 219 (485)
..+...|+.+|...|.+++.++.+ .|++++++||+.++++..... .+.......... +..
T Consensus 161 -------~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~-------~~~ 226 (278)
T 2bgk_A 161 -------EGVSHVYTATKHAVLGLTTSLCTELGEYGIRVNCVSPYIVASPLLTDVFGVDSSRVEELAHQA-------ANL 226 (278)
T ss_dssp -------TTSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCSCCCCTTSSSCCHHHHHHHHHHT-------CSS
T ss_pred -------CCCCcchHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeceecchhhhhhcccchhHHHHhhhcc-------ccc
Confidence 124578999999999999887643 689999999999999865432 123332222211 112
Q ss_pred eeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCCCccHHHHHHHHHHH
Q 047227 220 VYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEG 275 (485)
Q Consensus 220 ~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~~t~~el~~~i~~~ 275 (485)
...+++++|+|++++.++.... ....|+.|++.++..+++.|+++.+.+.
T Consensus 227 ~~~~~~~~dva~~~~~l~~~~~------~~~~G~~~~v~gg~~~~~~e~~~~i~~~ 276 (278)
T 2bgk_A 227 KGTLLRAEDVADAVAYLAGDES------KYVSGLNLVIDGGYTRTNPAFPTALKHG 276 (278)
T ss_dssp CSCCCCHHHHHHHHHHHHSGGG------TTCCSCEEEESTTGGGCCTHHHHHSCSC
T ss_pred ccccCCHHHHHHHHHHHcCccc------ccCCCCEEEECCcccccCCccchhhhhh
Confidence 3468999999999998865211 2256899999999999999999887654
|
| >1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.92 E-value=1.6e-24 Score=204.43 Aligned_cols=222 Identities=17% Similarity=0.100 Sum_probs=164.9
Q ss_pred CCCCCCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHH
Q 047227 1 MSGEENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQA 80 (485)
Q Consensus 1 M~~~~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~ 80 (485)
|+.+.++|++|||||+|+||+++++.|+++| ++|++++|...... + ... ..++++++.+|++|++++.++
T Consensus 1 m~~~~~~~~vlVTGasggiG~~~a~~l~~~G-~~V~~~~r~~~~~~----~---~~~--~~~~~~~~~~D~~~~~~~~~~ 70 (244)
T 1cyd_A 1 MKLNFSGLRALVTGAGKGIGRDTVKALHASG-AKVVAVTRTNSDLV----S---LAK--ECPGIEPVCVDLGDWDATEKA 70 (244)
T ss_dssp --CCCTTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHH----H---HHH--HSTTCEEEECCTTCHHHHHHH
T ss_pred CccCCCCCEEEEeCCCchHHHHHHHHHHHCC-CEEEEEeCCHHHHH----H---HHH--hccCCCcEEecCCCHHHHHHH
Confidence 5666778999999999999999999999999 68999988643110 0 111 124678889999999999999
Q ss_pred hcC---CCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHHHhc----C-CCEEEEecCccccccCCCCcCCC
Q 047227 81 LQG---AEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDACAEL----K-VKRLIYTSSPSVVFDGVHGIING 145 (485)
Q Consensus 81 ~~~---~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~~~~----~-v~r~V~~SS~~vy~~~~~~~~~~ 145 (485)
+++ +|+|||+|+... ..++++..+++|+.++.++++++.+. + .+++|++||..+|..
T Consensus 71 ~~~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~-------- 142 (244)
T 1cyd_A 71 LGGIGPVDLLVNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGVPGSIVNVSSMVAHVT-------- 142 (244)
T ss_dssp HTTCCCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSC--------
T ss_pred HHHcCCCCEEEECCcccCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEEcchhhcCC--------
Confidence 874 799999999332 22355678999999999998887764 5 579999999887741
Q ss_pred CCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCC--ChHHHHHHHHcCCCeEEecCCCce
Q 047227 146 NEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRL--LVPSLVAAARAGKSKFIIGDGNNV 220 (485)
Q Consensus 146 ~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~--~~~~~~~~~~~g~~~~~~g~g~~~ 220 (485)
..+...|+.+|...|.+++.++.+ .+++++++||+.++++.... ..+.+...+..+. ..
T Consensus 143 -------~~~~~~Y~~sK~a~~~~~~~~a~~~~~~gi~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~---------~~ 206 (244)
T 1cyd_A 143 -------FPNLITYSSTKGAMTMLTKAMAMELGPHKIRVNSVNPTVVLTDMGKKVSADPEFARKLKERH---------PL 206 (244)
T ss_dssp -------CTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBTTHHHHHHTCCHHHHHHHHHHS---------TT
T ss_pred -------CCCcchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCcccCccccccccCHHHHHHHHhcC---------Cc
Confidence 234578999999999999887654 58999999999999874321 1123333333332 23
Q ss_pred eecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCCC
Q 047227 221 YDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMES 262 (485)
Q Consensus 221 ~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~ 262 (485)
+++++++|+|++++.++.... ....|+.+++.++..
T Consensus 207 ~~~~~~~dva~~~~~l~~~~~------~~~~G~~~~v~gG~~ 242 (244)
T 1cyd_A 207 RKFAEVEDVVNSILFLLSDRS------ASTSGGGILVDAGYL 242 (244)
T ss_dssp SSCBCHHHHHHHHHHHHSGGG------TTCCSSEEEESTTGG
T ss_pred cCCCCHHHHHHHHHHHhCchh------hcccCCEEEECCCcc
Confidence 679999999999998875321 125688899887643
|
| >3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.3e-24 Score=207.98 Aligned_cols=236 Identities=16% Similarity=0.056 Sum_probs=169.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc---
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ--- 82 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 82 (485)
++|++|||||+|+||+++++.|+++| ++|++++|....... .... ...+++++.+|++|++++.++++
T Consensus 4 ~~k~vlVTGas~gIG~~~a~~l~~~G-~~V~~~~r~~~~~~~-------~~~~-~~~~~~~~~~Dv~~~~~~~~~~~~~~ 74 (281)
T 3m1a_A 4 SAKVWLVTGASSGFGRAIAEAAVAAG-DTVIGTARRTEALDD-------LVAA-YPDRAEAISLDVTDGERIDVVAADVL 74 (281)
T ss_dssp CCCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESSGGGGHH-------HHHH-CTTTEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCC-CEEEEEeCCHHHHHH-------HHHh-ccCCceEEEeeCCCHHHHHHHHHHHH
Confidence 46899999999999999999999999 699999887542110 1111 13579999999999998888776
Q ss_pred ----CCCEEEEcCCC-------CCCCCchhhhHHHHHHH----HHHHHHHHHhcCCCEEEEecCccccccCCCCcCCCCC
Q 047227 83 ----GAEVVFHMAAP-------NSSINNHKLHHSVNVEG----TKNVIDACAELKVKRLIYTSSPSVVFDGVHGIINGNE 147 (485)
Q Consensus 83 ----~~d~Vih~aa~-------~~~~~~~~~~~~~nv~~----t~~ll~a~~~~~v~r~V~~SS~~vy~~~~~~~~~~~e 147 (485)
++|+|||+||. ..+.++++..+++|+.+ ++.++..+++.+.+++|++||...+.
T Consensus 75 ~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~----------- 143 (281)
T 3m1a_A 75 ARYGRVDVLVNNAGRTQVGAFEETTERELRDLFELHVFGPARLTRALLPQMRERGSGSVVNISSFGGQL----------- 143 (281)
T ss_dssp HHHSCCSEEEECCCCEEECCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTC-----------
T ss_pred HhCCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEEcCccccC-----------
Confidence 68999999993 22334567789999999 66666666777888999999987753
Q ss_pred CCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCC-------CChHHHHHHHHcCCCeEEecCC
Q 047227 148 ALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDR-------LLVPSLVAAARAGKSKFIIGDG 217 (485)
Q Consensus 148 ~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~-------~~~~~~~~~~~~g~~~~~~g~g 217 (485)
+..+.+.|+.||...|.+.+.++.+ +|++++++|||.+.++... ...+.+.......... ...
T Consensus 144 ----~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 216 (281)
T 3m1a_A 144 ----SFAGFSAYSATKAALEQLSEGLADEVAPFGIKVLIVEPGAFRTNLFGKGAAYFSEENPAYAEKVGPTRQL---VQG 216 (281)
T ss_dssp ----CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCTTTCCCCEEECCBCTTTHHHHHHHHHH---HHC
T ss_pred ----CCCCchHHHHHHHHHHHHHHHHHHHhhccCcEEEEEecCccccccccccccccCCcchhhHHHhHHHHHH---Hhh
Confidence 2346789999999999999887765 7899999999999876421 1111111111111111 112
Q ss_pred CceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCCCccHHHHHHHHHHHcC
Q 047227 218 NNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLG 277 (485)
Q Consensus 218 ~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~~t~~el~~~i~~~~g 277 (485)
....++.+++|+|++++.+++. + ..+..|+++++......+....+.+.++
T Consensus 217 ~~~~~~~~~~dva~a~~~~~~~--------~-~~~~~~~l~s~~~~~i~g~~~~i~~~~~ 267 (281)
T 3m1a_A 217 SDGSQPGDPAKAAAAIRLALDT--------E-KTPLRLALGGDAVDFLTGHLDSVRAELT 267 (281)
T ss_dssp -----CBCHHHHHHHHHHHHHS--------S-SCCSEEEESHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCCCHHHHHHHHHHHHhC--------C-CCCeEEecCchHHHHHHHHHHHHHHHHH
Confidence 2345788899999999998762 1 3467899998776666777666666543
|
| >3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.91 E-value=4.5e-23 Score=193.63 Aligned_cols=204 Identities=16% Similarity=0.119 Sum_probs=142.3
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCC
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGA 84 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 84 (485)
+++|+||||||+|+||+++++.|+++|.++|++++|....... +...+++++.+|++|++++.++++++
T Consensus 21 ~~mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~~~~~-----------~~~~~~~~~~~Dl~d~~~~~~~~~~~ 89 (236)
T 3qvo_A 21 GHMKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIHK-----------PYPTNSQIIMGDVLNHAALKQAMQGQ 89 (236)
T ss_dssp -CCEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSGGGSCS-----------SCCTTEEEEECCTTCHHHHHHHHTTC
T ss_pred CcccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcChhhhcc-----------cccCCcEEEEecCCCHHHHHHHhcCC
Confidence 4567999999999999999999999994489999987653211 12357999999999999999999999
Q ss_pred CEEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCccccccCCCCcCCCCCCCCCCCCCCchHHHHHH
Q 047227 85 EVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDFYSATKA 164 (485)
Q Consensus 85 d~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy~~~~~~~~~~~e~~~~~~~~~~~Y~~sK~ 164 (485)
|+|||+++... ....+.+++++|++.+++|||++||..+|+.......+.++.. +..+...| .
T Consensus 90 D~vv~~a~~~~-----------~~~~~~~~~~~~~~~~~~~iV~iSS~~~~~~~~~~~~~~~~~~--~~~~~~~~----~ 152 (236)
T 3qvo_A 90 DIVYANLTGED-----------LDIQANSVIAAMKACDVKRLIFVLSLGIYDEVPGKFVEWNNAV--IGEPLKPF----R 152 (236)
T ss_dssp SEEEEECCSTT-----------HHHHHHHHHHHHHHTTCCEEEEECCCCC------------------CGGGHHH----H
T ss_pred CEEEEcCCCCc-----------hhHHHHHHHHHHHHcCCCEEEEEecceecCCCCcccccchhhc--ccchHHHH----H
Confidence 99999998421 1135679999999999999999999999864433222222221 12233334 4
Q ss_pred HHHHHHHHHhCCCCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCc-eeecccHHHHHHHHHHHHHHhccc
Q 047227 165 EGEALVIKANGTNGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNN-VYDFTYVANVAHAHICAERALASE 243 (485)
Q Consensus 165 ~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~-~~~~i~v~D~a~a~~~~~~~~~~~ 243 (485)
.+|+.++ ..+++++++||+.++++..... .....+.. ...+++++|+|++++.++...
T Consensus 153 ~~~~~l~----~~gi~~~~vrPg~i~~~~~~~~--------------~~~~~~~~~~~~~i~~~DvA~~i~~ll~~~--- 211 (236)
T 3qvo_A 153 RAADAIE----ASGLEYTILRPAWLTDEDIIDY--------------ELTSRNEPFKGTIVSRKSVAALITDIIDKP--- 211 (236)
T ss_dssp HHHHHHH----TSCSEEEEEEECEEECCSCCCC--------------EEECTTSCCSCSEEEHHHHHHHHHHHHHST---
T ss_pred HHHHHHH----HCCCCEEEEeCCcccCCCCcce--------------EEeccCCCCCCcEECHHHHHHHHHHHHcCc---
Confidence 4565554 4799999999999998753221 11222222 235899999999999998731
Q ss_pred cchhhccCCcEEEeeCCC
Q 047227 244 VTVAEKAAGQAYFVTNME 261 (485)
Q Consensus 244 ~~~~~~~~g~~ynv~~~~ 261 (485)
....++.|++++++
T Consensus 212 ----~~~~g~~~~i~~~~ 225 (236)
T 3qvo_A 212 ----EKHIGENIGINQPG 225 (236)
T ss_dssp ----TTTTTEEEEEECSS
T ss_pred ----ccccCeeEEecCCC
Confidence 22568999999875
|
| >1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.4e-23 Score=199.35 Aligned_cols=224 Identities=13% Similarity=0.136 Sum_probs=166.8
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhh-cCCCeEEEEecCCCHHHHHHHhc-
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEAL-RSGRAHYVSFDLRHKAQVLQALQ- 82 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~- 82 (485)
.++|++|||||+|+||+++++.|+++| ++|++++|....... ...... ...++.++.+|++|++++.++++
T Consensus 9 ~~~~~vlVtGasggiG~~la~~l~~~G-~~V~~~~r~~~~~~~------~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 81 (255)
T 1fmc_A 9 LDGKCAIITGAGAGIGKEIAITFATAG-ASVVVSDINADAANH------VVDEIQQLGGQAFACRCDITSEQELSALADF 81 (255)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHTTT-CEEEEEESCHHHHHH------HHHHHHHTTCCEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCEEEEECCccHHHHHHHHHHHHCC-CEEEEEcCCHHHHHH------HHHHHHHhCCceEEEEcCCCCHHHHHHHHHH
Confidence 456899999999999999999999999 699999887532110 011111 13578899999999999988876
Q ss_pred ------CCCEEEEcCCCCC------CCCchhhhHHHHHHHHHHHHHHHH----hcCCCEEEEecCccccccCCCCcCCCC
Q 047227 83 ------GAEVVFHMAAPNS------SINNHKLHHSVNVEGTKNVIDACA----ELKVKRLIYTSSPSVVFDGVHGIINGN 146 (485)
Q Consensus 83 ------~~d~Vih~aa~~~------~~~~~~~~~~~nv~~t~~ll~a~~----~~~v~r~V~~SS~~vy~~~~~~~~~~~ 146 (485)
++|+|||+|+... ..++++..+++|+.++.++++++. +.+.+++|++||...+.
T Consensus 82 ~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~---------- 151 (255)
T 1fmc_A 82 AISKLGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTITSMAAEN---------- 151 (255)
T ss_dssp HHHHHSSCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTC----------
T ss_pred HHHhcCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhcC----------
Confidence 7999999999322 233567789999999999998875 45678999999987763
Q ss_pred CCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCC-ChHHHHHHHHcCCCeEEecCCCceee
Q 047227 147 EALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRL-LVPSLVAAARAGKSKFIIGDGNNVYD 222 (485)
Q Consensus 147 e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~-~~~~~~~~~~~g~~~~~~g~g~~~~~ 222 (485)
+..+...|+.+|...|.+++.++.+ .+++++++||+.++++.... ..+.+......+.+ ...
T Consensus 152 -----~~~~~~~Y~~sK~a~~~~~~~~~~~~~~~~i~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~---------~~~ 217 (255)
T 1fmc_A 152 -----KNINMTSYASSKAAASHLVRNMAFDLGEKNIRVNGIAPGAILTDALKSVITPEIEQKMLQHTP---------IRR 217 (255)
T ss_dssp -----CCTTCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCSHHHHTTCCHHHHHHHHHTCS---------SCS
T ss_pred -----CCCCCcccHHHHHHHHHHHHHHHHHhhhcCcEEEEEecccCcchhhhhccChHHHHHHHhcCC---------ccc
Confidence 1245678999999999999887643 58999999999999874322 23444444444432 235
Q ss_pred cccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCCCccH
Q 047227 223 FTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMESIKF 265 (485)
Q Consensus 223 ~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~~t~ 265 (485)
+.+++|+|++++.++.... ....|+.|+++++..+|+
T Consensus 218 ~~~~~dva~~~~~l~~~~~------~~~~G~~~~v~gg~~~s~ 254 (255)
T 1fmc_A 218 LGQPQDIANAALFLCSPAA------SWVSGQILTVSGGGVQEL 254 (255)
T ss_dssp CBCHHHHHHHHHHHHSGGG------TTCCSCEEEESTTSCCCC
T ss_pred CCCHHHHHHHHHHHhCCcc------ccCCCcEEEECCceeccC
Confidence 7899999999998865211 124688999999877663
|
| >2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.3e-23 Score=200.61 Aligned_cols=229 Identities=20% Similarity=0.093 Sum_probs=161.1
Q ss_pred CCCCCCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhc---------CCCeEEEEecC
Q 047227 1 MSGEENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALR---------SGRAHYVSFDL 71 (485)
Q Consensus 1 M~~~~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~---------~~~v~~~~~Dl 71 (485)
|+..++++++|||||+|+||+++++.|+++| ++|++++|....... ....+. ..++.++.+|+
T Consensus 1 m~~~~~~k~vlITGasggiG~~la~~l~~~G-~~V~~~~r~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~D~ 72 (264)
T 2pd6_A 1 MQNRLRSALALVTGAGSGIGRAVSVRLAGEG-ATVAACDLDRAAAQE-------TVRLLGGPGSKEGPPRGNHAAFQADV 72 (264)
T ss_dssp CCCCCTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSHHHHHH-------HHHTC------------CCEEEECCT
T ss_pred CccccCCCEEEEECCCChHHHHHHHHHHHCC-CEEEEEeCChHHHHH-------HHHHHHhcCccccccCcceEEEEecC
Confidence 6667778999999999999999999999999 699999887532110 001111 14688999999
Q ss_pred CCHHHHHHHhcC-------C-CEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHHHhc----C-CCEEEEecC
Q 047227 72 RHKAQVLQALQG-------A-EVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDACAEL----K-VKRLIYTSS 131 (485)
Q Consensus 72 ~d~~~l~~~~~~-------~-d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~~~~----~-v~r~V~~SS 131 (485)
+|.+++.+++++ . |+|||+|+... +.++++..+++|+.++.++++++.+. + .+++|++||
T Consensus 73 ~~~~~~~~~~~~~~~~~g~i~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS 152 (264)
T 2pd6_A 73 SEARAARCLLEQVQACFSRPPSVVVSCAGITQDEFLLHMSEDDWDKVIAVNLKGTFLVTQAAAQALVSNGCRGSIINISS 152 (264)
T ss_dssp TSHHHHHHHHHHHHHHHSSCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECC
T ss_pred CCHHHHHHHHHHHHHHhCCCCeEEEECCCcCCCcchhhCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCceEEEECC
Confidence 999988887754 3 99999999432 23456778999999999999987764 4 469999999
Q ss_pred ccccccCCCCcCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCChHHHHHHHHcC
Q 047227 132 PSVVFDGVHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLLVPSLVAAARAG 208 (485)
Q Consensus 132 ~~vy~~~~~~~~~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g 208 (485)
...+. +..+...|+.+|...|.+.+.++.+ .|++++++||+.++++......+.+...+..+
T Consensus 153 ~~~~~---------------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~ 217 (264)
T 2pd6_A 153 IVGKV---------------GNVGQTNYAASKAGVIGLTQTAARELGRHGIRCNSVLPGFIATPMTQKVPQKVVDKITEM 217 (264)
T ss_dssp THHHH---------------CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSCC----------CTGGG
T ss_pred hhhcc---------------CCCCChhhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeecccccchhhcCHHHHHHHHHh
Confidence 76653 1235678999999999998887654 68999999999999986443222211111111
Q ss_pred CCeEEecCCCceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCCCccHHH
Q 047227 209 KSKFIIGDGNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMESIKFWE 267 (485)
Q Consensus 209 ~~~~~~g~g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~~t~~e 267 (485)
.....+.+++|+|++++.++.... ....|+.+++.++..++...
T Consensus 218 ---------~~~~~~~~~~dva~~~~~l~~~~~------~~~~G~~~~v~gg~~~~~~~ 261 (264)
T 2pd6_A 218 ---------IPMGHLGDPEDVADVVAFLASEDS------GYITGTSVEVTGGLFMAENL 261 (264)
T ss_dssp ---------CTTCSCBCHHHHHHHHHHHHSGGG------TTCCSCEEEESTTC------
T ss_pred ---------CCCCCCCCHHHHHHHHHHHcCCcc------cCCCCCEEEECCCceecccc
Confidence 122357899999999998865211 22668999999887665443
|
| >4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A | Back alignment and structure |
|---|
Probab=99.90 E-value=5.7e-24 Score=202.69 Aligned_cols=233 Identities=20% Similarity=0.178 Sum_probs=167.4
Q ss_pred CCCCCCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHH
Q 047227 1 MSGEENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQA 80 (485)
Q Consensus 1 M~~~~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~ 80 (485)
|+...++|++|||||+|+||+++++.|+++| ++|.+++|....... ....+ ..++.++.+|++|++++.++
T Consensus 2 mm~~l~~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~-------~~~~~-~~~~~~~~~D~~~~~~v~~~ 72 (259)
T 4e6p_A 2 MMKRLEGKSALITGSARGIGRAFAEAYVREG-ATVAIADIDIERARQ-------AAAEI-GPAAYAVQMDVTRQDSIDAA 72 (259)
T ss_dssp --CTTTTCEEEEETCSSHHHHHHHHHHHHTT-CEEEEEESCHHHHHH-------HHHHH-CTTEEEEECCTTCHHHHHHH
T ss_pred ccccCCCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHH-------HHHHh-CCCceEEEeeCCCHHHHHHH
Confidence 5556678999999999999999999999999 689999886432110 11111 35788999999999998888
Q ss_pred hc-------CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHHHhc----C-CCEEEEecCccccccCCCC
Q 047227 81 LQ-------GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDACAEL----K-VKRLIYTSSPSVVFDGVHG 141 (485)
Q Consensus 81 ~~-------~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~~~~----~-v~r~V~~SS~~vy~~~~~~ 141 (485)
++ ++|+|||+||... +.++++..+++|+.++.++++++... + ..++|++||...+.
T Consensus 73 ~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~----- 147 (259)
T 4e6p_A 73 IAATVEHAGGLDILVNNAALFDLAPIVEITRESYEKLFAINVAGTLFTLQAAARQMIAQGRGGKIINMASQAGRR----- 147 (259)
T ss_dssp HHHHHHHSSSCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTS-----
T ss_pred HHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEECChhhcc-----
Confidence 76 6999999999422 23456778899999999999987653 2 35899999987763
Q ss_pred cCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCChHHHHHHHHc---CCCeEEec
Q 047227 142 IINGNEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLLVPSLVAAARA---GKSKFIIG 215 (485)
Q Consensus 142 ~~~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~---g~~~~~~g 215 (485)
+..+...|+.+|...|.+.+.++.+ .|+++.+++||.+++|..... ..+...... ++.....+
T Consensus 148 ----------~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~-~~~~~~~~~~~~~~~~~~~~ 216 (259)
T 4e6p_A 148 ----------GEALVAIYCATKAAVISLTQSAGLDLIKHRINVNAIAPGVVDGEHWDGV-DALFARYENRPRGEKKRLVG 216 (259)
T ss_dssp ----------CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSTTHHHH-HHHHHHHHTCCTTHHHHHHH
T ss_pred ----------CCCCChHHHHHHHHHHHHHHHHHHHhhhcCCEEEEEEECCCccchhhhh-hhhhhhhccCChHHHHHHHh
Confidence 2345678999999999999887754 489999999999998853221 111111111 11111223
Q ss_pred CCCceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCCCcc
Q 047227 216 DGNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMESIK 264 (485)
Q Consensus 216 ~g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~~t 264 (485)
++.+...+.+++|+|++++.++... ..-..|+.|++.++..+|
T Consensus 217 ~~~p~~r~~~~~dva~~v~~L~s~~------~~~itG~~i~vdgG~~~s 259 (259)
T 4e6p_A 217 EAVPFGRMGTAEDLTGMAIFLASAE------SDYIVSQTYNVDGGNWMS 259 (259)
T ss_dssp HHSTTSSCBCTHHHHHHHHHTTSGG------GTTCCSCEEEESTTSSCC
T ss_pred ccCCCCCCcCHHHHHHHHHHHhCCc------cCCCCCCEEEECcChhcC
Confidence 3345677999999999998775421 122568999999886543
|
| >2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=8.7e-23 Score=192.96 Aligned_cols=223 Identities=20% Similarity=0.151 Sum_probs=161.8
Q ss_pred CCCCCCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhh--cCCCeEEEEecCCCHHHHH
Q 047227 1 MSGEENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEAL--RSGRAHYVSFDLRHKAQVL 78 (485)
Q Consensus 1 M~~~~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~Dl~d~~~l~ 78 (485)
|+-..+++++|||||+|+||+++++.|+++| ++|++++|....... ...... ...++.++.+|++|++++.
T Consensus 1 m~~~~~~~~vlVtGasggiG~~la~~l~~~G-~~V~~~~r~~~~~~~------~~~~~~~~~~~~~~~~~~D~~~~~~~~ 73 (248)
T 2pnf_A 1 MEIKLQGKVSLVTGSTRGIGRAIAEKLASAG-STVIITGTSGERAKA------VAEEIANKYGVKAHGVEMNLLSEESIN 73 (248)
T ss_dssp CCCCCTTCEEEETTCSSHHHHHHHHHHHHTT-CEEEEEESSHHHHHH------HHHHHHHHHCCCEEEEECCTTCHHHHH
T ss_pred CccccCCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEeCChHHHHH------HHHHHHhhcCCceEEEEccCCCHHHHH
Confidence 6555677899999999999999999999999 699999886432110 011110 1357899999999999988
Q ss_pred HHhc-------CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHH----HHhcCCCEEEEecCccccccCCC
Q 047227 79 QALQ-------GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDA----CAELKVKRLIYTSSPSVVFDGVH 140 (485)
Q Consensus 79 ~~~~-------~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a----~~~~~v~r~V~~SS~~vy~~~~~ 140 (485)
++++ ++|+|||+|+... ..++++..+++|+.++.++.++ +++.+.+++|++||...+..
T Consensus 74 ~~~~~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~--- 150 (248)
T 2pnf_A 74 KAFEEIYNLVDGIDILVNNAGITRDKLFLRMSLLDWEEVLKVNLTGTFLVTQNSLRKMIKQRWGRIVNISSVVGFTG--- 150 (248)
T ss_dssp HHHHHHHHHSSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHCHHHHHHTCEEEEEECCHHHHHC---
T ss_pred HHHHHHHHhcCCCCEEEECCCCCCCCccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEccHHhcCC---
Confidence 8876 7999999999432 2235667899999999666655 44567789999999766531
Q ss_pred CcCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCC
Q 047227 141 GIINGNEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDG 217 (485)
Q Consensus 141 ~~~~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g 217 (485)
..+...|+.+|...|.+.+.++.+ .+++++++||+.++++........+........
T Consensus 151 ------------~~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~-------- 210 (248)
T 2pnf_A 151 ------------NVGQVNYSTTKAGLIGFTKSLAKELAPRNVLVNAVAPGFIETDMTAVLSEEIKQKYKEQI-------- 210 (248)
T ss_dssp ------------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCGGGGGSCHHHHHHHHHTC--------
T ss_pred ------------CCCCchHHHHHHHHHHHHHHHHHHhcccCeEEEEEEeceecCchhhhccHHHHHHHHhcC--------
Confidence 234578999999999998877643 589999999999998854332232322222221
Q ss_pred CceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCC
Q 047227 218 NNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNM 260 (485)
Q Consensus 218 ~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~ 260 (485)
....+++++|+|++++.++.... ....|+.|++.++
T Consensus 211 -~~~~~~~~~dva~~~~~l~~~~~------~~~~G~~~~v~gg 246 (248)
T 2pnf_A 211 -PLGRFGSPEEVANVVLFLCSELA------SYITGEVIHVNGG 246 (248)
T ss_dssp -TTSSCBCHHHHHHHHHHHHSGGG------TTCCSCEEEESTT
T ss_pred -CCCCccCHHHHHHHHHHHhCchh------hcCCCcEEEeCCC
Confidence 12358899999999998865321 1256899999875
|
| >3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=5.6e-23 Score=193.90 Aligned_cols=222 Identities=16% Similarity=0.057 Sum_probs=162.7
Q ss_pred CCCCCCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHH
Q 047227 1 MSGEENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQA 80 (485)
Q Consensus 1 M~~~~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~ 80 (485)
|+-..+++++|||||+|+||+++++.|+++| ++|++++|...... . +.. ..++++++.+|++|++++.++
T Consensus 1 M~~~l~~k~vlITGasggiG~~~a~~l~~~G-~~V~~~~r~~~~~~----~---~~~--~~~~~~~~~~D~~~~~~~~~~ 70 (244)
T 3d3w_A 1 MELFLAGRRVLVTGAGKGIGRGTVQALHATG-ARVVAVSRTQADLD----S---LVR--ECPGIEPVCVDLGDWEATERA 70 (244)
T ss_dssp CCCCCTTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHH----H---HHH--HSTTCEEEECCTTCHHHHHHH
T ss_pred CccccCCcEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHH----H---HHH--HcCCCCEEEEeCCCHHHHHHH
Confidence 5445667899999999999999999999999 58999988643110 0 111 123577889999999999999
Q ss_pred hc---CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHHHhc----C-CCEEEEecCccccccCCCCcCCC
Q 047227 81 LQ---GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDACAEL----K-VKRLIYTSSPSVVFDGVHGIING 145 (485)
Q Consensus 81 ~~---~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~~~~----~-v~r~V~~SS~~vy~~~~~~~~~~ 145 (485)
++ ++|+|||+|+... ..++++..+++|+.++.++.+++.+. + .+++|++||...+.
T Consensus 71 ~~~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~--------- 141 (244)
T 3d3w_A 71 LGSVGPVDLLVNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVPGAIVNVSSQCSQR--------- 141 (244)
T ss_dssp HTTCCCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTS---------
T ss_pred HHHcCCCCEEEECCccCCCcchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEeCchhhcc---------
Confidence 86 4899999999432 22345778999999999998887653 5 67999999987763
Q ss_pred CCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCC--hHHHHHHHHcCCCeEEecCCCce
Q 047227 146 NEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLL--VPSLVAAARAGKSKFIIGDGNNV 220 (485)
Q Consensus 146 ~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~--~~~~~~~~~~g~~~~~~g~g~~~ 220 (485)
+..+.+.|+.+|...|.+++.++.+ .+++++++||+.++++..... .+........+. ..
T Consensus 142 ------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~---------~~ 206 (244)
T 3d3w_A 142 ------AVTNHSVYCSTKGALDMLTKVMALELGPHKIRVNAVNPTVVMTSMGQATWSDPHKAKTMLNRI---------PL 206 (244)
T ss_dssp ------CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBTTTTHHHHSCSTTHHHHHHHTC---------TT
T ss_pred ------CCCCCchHHHHHHHHHHHHHHHHHHhcccCeEEEEEEeccccccchhhhccChHHHHHHHhhC---------CC
Confidence 1245678999999999999887654 589999999999998752210 011112222221 23
Q ss_pred eecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCCC
Q 047227 221 YDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMES 262 (485)
Q Consensus 221 ~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~ 262 (485)
..+++++|+|++++.++.... ....|+.|++.++..
T Consensus 207 ~~~~~~~dva~~~~~l~~~~~------~~~~G~~~~v~gG~~ 242 (244)
T 3d3w_A 207 GKFAEVEHVVNAILFLLSDRS------GMTTGSTLPVEGGFW 242 (244)
T ss_dssp CSCBCHHHHHHHHHHHHSGGG------TTCCSCEEEESTTGG
T ss_pred CCCcCHHHHHHHHHHHcCccc------cCCCCCEEEECCCcc
Confidence 468999999999998875211 125689999988753
|
| >1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.90 E-value=1.3e-22 Score=191.03 Aligned_cols=209 Identities=20% Similarity=0.110 Sum_probs=160.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc----
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ---- 82 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~---- 82 (485)
+|++|||||+|+||+++++.|+++| ++|++++|... ..++.++.+|++|++++.++++
T Consensus 2 ~k~vlVtGasggiG~~la~~l~~~G-~~V~~~~r~~~-----------------~~~~~~~~~D~~~~~~~~~~~~~~~~ 63 (242)
T 1uay_A 2 ERSALVTGGASGLGRAAALALKARG-YRVVVLDLRRE-----------------GEDLIYVEGDVTREEDVRRAVARAQE 63 (242)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHT-CEEEEEESSCC-----------------SSSSEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCC-CEEEEEccCcc-----------------ccceEEEeCCCCCHHHHHHHHHHHHh
Confidence 4799999999999999999999999 69999988653 1245889999999999998887
Q ss_pred --CCCEEEEcCCCCCCC-------C----chhhhHHHHHHHHHHHHHHHHhcC----------CCEEEEecCccccccCC
Q 047227 83 --GAEVVFHMAAPNSSI-------N----NHKLHHSVNVEGTKNVIDACAELK----------VKRLIYTSSPSVVFDGV 139 (485)
Q Consensus 83 --~~d~Vih~aa~~~~~-------~----~~~~~~~~nv~~t~~ll~a~~~~~----------v~r~V~~SS~~vy~~~~ 139 (485)
++|+|||+|+..... . +++..+++|+.++.++++++.+.- .+++|++||...+..
T Consensus 64 ~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~-- 141 (242)
T 1uay_A 64 EAPLFAVVSAAGVGLAEKILGKEGPHGLESFRRVLEVNLLGTFNVLRLAAWAMRENPPDAEGQRGVIVNTASVAAFEG-- 141 (242)
T ss_dssp HSCEEEEEECCCCCCCCCSBCSSSBCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCCTTSCSEEEEEECCTHHHHC--
T ss_pred hCCceEEEEcccccCcccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEeCChhhccC--
Confidence 789999999932211 1 567789999999999999987642 129999999888742
Q ss_pred CCcCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecC
Q 047227 140 HGIINGNEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGD 216 (485)
Q Consensus 140 ~~~~~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~ 216 (485)
..+...|+.+|...|.+.+.++.+ .|++++++||+.++++........+......+.+.
T Consensus 142 -------------~~~~~~Y~~sK~a~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~----- 203 (242)
T 1uay_A 142 -------------QIGQAAYAASKGGVVALTLPAARELAGWGIRVVTVAPGLFDTPLLQGLPEKAKASLAAQVPF----- 203 (242)
T ss_dssp -------------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSCSSHHHHTSCHHHHHHHHTTCCS-----
T ss_pred -------------CCCCchhhHHHHHHHHHHHHHHHHHhhcCcEEEEEEeccCcchhhhccchhHHHHHHhhCCC-----
Confidence 235678999999999998876643 48999999999999875433333333444433221
Q ss_pred CCceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCCCcc
Q 047227 217 GNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMESIK 264 (485)
Q Consensus 217 g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~~t 264 (485)
...+++++|+|++++.++.. ....|+.|++.++..++
T Consensus 204 ---~~~~~~~~dva~~~~~l~~~--------~~~~G~~~~v~gG~~~~ 240 (242)
T 1uay_A 204 ---PPRLGRPEEYAALVLHILEN--------PMLNGEVVRLDGALRMA 240 (242)
T ss_dssp ---SCSCCCHHHHHHHHHHHHHC--------TTCCSCEEEESTTCCCC
T ss_pred ---cccCCCHHHHHHHHHHHhcC--------CCCCCcEEEEcCCeecC
Confidence 03478999999999998762 22678999998876543
|
| >3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=2.4e-22 Score=186.68 Aligned_cols=202 Identities=13% Similarity=0.081 Sum_probs=148.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHH-hcCCceEEEeecCCc-cccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCC
Q 047227 7 ERLCVVTGGRGFAARHLVEMLI-RYDMFSVRIADLSDS-IALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGA 84 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll-~~G~~~V~~~~r~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 84 (485)
+++||||||+|+||+++++.|+ ++| ++|++++|... .... +. ....+++++.+|++|++++.++++++
T Consensus 5 mk~vlVtGasg~iG~~~~~~l~~~~g-~~V~~~~r~~~~~~~~-------~~--~~~~~~~~~~~D~~d~~~~~~~~~~~ 74 (221)
T 3r6d_A 5 YXYITILGAAGQIAQXLTATLLTYTD-MHITLYGRQLKTRIPP-------EI--IDHERVTVIEGSFQNPGXLEQAVTNA 74 (221)
T ss_dssp CSEEEEESTTSHHHHHHHHHHHHHCC-CEEEEEESSHHHHSCH-------HH--HTSTTEEEEECCTTCHHHHHHHHTTC
T ss_pred EEEEEEEeCCcHHHHHHHHHHHhcCC-ceEEEEecCccccchh-------hc--cCCCceEEEECCCCCHHHHHHHHcCC
Confidence 3459999999999999999999 899 59999998743 2110 00 03468999999999999999999999
Q ss_pred CEEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCccccccCCCCcCCCCCCCCCCCCCCc-hHHHHH
Q 047227 85 EVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVVFDGVHGIINGNEALPYPPKHND-FYSATK 163 (485)
Q Consensus 85 d~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy~~~~~~~~~~~e~~~~~~~~~~-~Y~~sK 163 (485)
|+|||+++.. |+. ++++++++++.+++|||++||..+|...+....... ..... .|+.+|
T Consensus 75 d~vv~~ag~~------------n~~-~~~~~~~~~~~~~~~iv~iSs~~~~~~~~~~~~~~~------~~~~~~~y~~~K 135 (221)
T 3r6d_A 75 EVVFVGAMES------------GSD-MASIVKALSRXNIRRVIGVSMAGLSGEFPVALEKWT------FDNLPISYVQGE 135 (221)
T ss_dssp SEEEESCCCC------------HHH-HHHHHHHHHHTTCCEEEEEEETTTTSCSCHHHHHHH------HHTSCHHHHHHH
T ss_pred CEEEEcCCCC------------Chh-HHHHHHHHHhcCCCeEEEEeeceecCCCCccccccc------ccccccHHHHHH
Confidence 9999999842 444 899999999999999999999998853211100000 01122 799999
Q ss_pred HHHHHHHHHHhCCCCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCc-eeecccHHHHHHHHHHHH--HHh
Q 047227 164 AEGEALVIKANGTNGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNN-VYDFTYVANVAHAHICAE--RAL 240 (485)
Q Consensus 164 ~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~-~~~~i~v~D~a~a~~~~~--~~~ 240 (485)
..+|.+++. .+++++++||+.++++... +. ......+.. ...+++.+|+|++++.++ ..
T Consensus 136 ~~~e~~~~~----~~i~~~~vrpg~v~~~~~~------------~~-~~~~~~~~~~~~~~~~~~dvA~~~~~l~~~~~- 197 (221)
T 3r6d_A 136 RQARNVLRE----SNLNYTILRLTWLYNDPEX------------TD-YELIPEGAQFNDAQVSREAVVKAIFDILHAAD- 197 (221)
T ss_dssp HHHHHHHHH----SCSEEEEEEECEEECCTTC------------CC-CEEECTTSCCCCCEEEHHHHHHHHHHHHTCSC-
T ss_pred HHHHHHHHh----CCCCEEEEechhhcCCCCC------------cc-eeeccCCccCCCceeeHHHHHHHHHHHHHhcC-
Confidence 999999976 6899999999999987321 11 111111222 224899999999999987 42
Q ss_pred ccccchhhccCCcEEEeeCCC
Q 047227 241 ASEVTVAEKAAGQAYFVTNME 261 (485)
Q Consensus 241 ~~~~~~~~~~~g~~ynv~~~~ 261 (485)
.....++.+.+.++.
T Consensus 198 ------~~~~~~~~~~i~~~~ 212 (221)
T 3r6d_A 198 ------ETPFHRTSIGVGEPG 212 (221)
T ss_dssp ------CGGGTTEEEEEECTT
T ss_pred ------hhhhhcceeeecCCC
Confidence 122557788887653
|
| >3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.2e-22 Score=193.93 Aligned_cols=227 Identities=16% Similarity=0.134 Sum_probs=164.2
Q ss_pred CCCCCCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhc---CCCeEEEEecCCCHHHH
Q 047227 1 MSGEENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALR---SGRAHYVSFDLRHKAQV 77 (485)
Q Consensus 1 M~~~~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~Dl~d~~~l 77 (485)
|+-..++|++|||||+|+||+++++.|+++| ++|++++|....... ....+. ..++.++.+|++|++++
T Consensus 1 m~~~l~~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~-------~~~~l~~~~~~~~~~~~~D~~~~~~~ 72 (263)
T 3ai3_A 1 MDMGISGKVAVITGSSSGIGLAIAEGFAKEG-AHIVLVARQVDRLHE-------AARSLKEKFGVRVLEVAVDVATPEGV 72 (263)
T ss_dssp CCCCCTTCEEEEESCSSHHHHHHHHHHHHTT-CEEEEEESCHHHHHH-------HHHHHHHHHCCCEEEEECCTTSHHHH
T ss_pred CCCCCCCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEcCCHHHHHH-------HHHHHHHhcCCceEEEEcCCCCHHHH
Confidence 5545667899999999999999999999999 699999886432100 111111 35788999999999988
Q ss_pred HHHhc-------CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHHH----hcCCCEEEEecCccccccCC
Q 047227 78 LQALQ-------GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDACA----ELKVKRLIYTSSPSVVFDGV 139 (485)
Q Consensus 78 ~~~~~-------~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~~----~~~v~r~V~~SS~~vy~~~~ 139 (485)
.++++ ++|+|||+||... ..++++..+++|+.++.++.+++. +.+.+++|++||...+..
T Consensus 73 ~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~-- 150 (263)
T 3ai3_A 73 DAVVESVRSSFGGADILVNNAGTGSNETIMEAADEKWQFYWELLVMAAVRLARGLVPGMRARGGGAIIHNASICAVQP-- 150 (263)
T ss_dssp HHHHHHHHHHHSSCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSC--
T ss_pred HHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECchhhcCC--
Confidence 88876 6999999999322 233567789999999999988874 456789999999887641
Q ss_pred CCcCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCChH-----------HHHHHH
Q 047227 140 HGIINGNEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLLVP-----------SLVAAA 205 (485)
Q Consensus 140 ~~~~~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~~~-----------~~~~~~ 205 (485)
..+...|+.+|...|.+.+.++.+ +|++++++|||.+++|......+ .+....
T Consensus 151 -------------~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (263)
T 3ai3_A 151 -------------LWYEPIYNVTKAALMMFSKTLATEVIKDNIRVNCINPGLILTPDWIKTAKELTKDNGGDWKGYLQSV 217 (263)
T ss_dssp -------------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCHHHHHHHHHHTTTTTCCHHHHHHHH
T ss_pred -------------CCCcchHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccCcchhhhhHhhhcccCCcHHHHHHHH
Confidence 234578999999999999887654 68999999999999874221111 111111
Q ss_pred HcCCCeEEecCCCceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCCCcc
Q 047227 206 RAGKSKFIIGDGNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMESIK 264 (485)
Q Consensus 206 ~~g~~~~~~g~g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~~t 264 (485)
... ......+.+++|+|++++.++.... ....|+.|++.++..++
T Consensus 218 ~~~--------~~p~~~~~~~~dvA~~~~~l~s~~~------~~~~G~~~~vdgG~~~s 262 (263)
T 3ai3_A 218 ADE--------HAPIKRFASPEELANFFVFLCSERA------TYSVGSAYFVDGGMLKT 262 (263)
T ss_dssp HHH--------HCTTCSCBCHHHHHHHHHHHTSTTC------TTCCSCEEEESTTCCCC
T ss_pred Hhc--------CCCCCCCcCHHHHHHHHHHHcCccc------cCCCCcEEEECCCcccc
Confidence 111 0123468899999999998764211 12568999999886554
|
| >3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=5.2e-23 Score=195.59 Aligned_cols=226 Identities=15% Similarity=0.083 Sum_probs=164.7
Q ss_pred CCCCCCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecC-CccccCCccchhhhhhhh-cCCCeEEEEecCCCHHHHH
Q 047227 1 MSGEENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLS-DSIALEPHEEQGILGEAL-RSGRAHYVSFDLRHKAQVL 78 (485)
Q Consensus 1 M~~~~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~-~~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~ 78 (485)
|.+..++|++|||||+|+||+++++.|+++| ++|.+++|. .... +. ...... ...++.++.+|++|++++.
T Consensus 1 m~~~l~~k~vlVTGasggiG~~~a~~l~~~G-~~V~~~~r~~~~~~----~~--~~~~~~~~~~~~~~~~~D~~~~~~~~ 73 (258)
T 3afn_B 1 MFPDLKGKRVLITGSSQGIGLATARLFARAG-AKVGLHGRKAPANI----DE--TIASMRADGGDAAFFAADLATSEACQ 73 (258)
T ss_dssp -CGGGTTCEEEETTCSSHHHHHHHHHHHHTT-CEEEEEESSCCTTH----HH--HHHHHHHTTCEEEEEECCTTSHHHHH
T ss_pred CCcCCCCCEEEEeCCCChHHHHHHHHHHHCC-CEEEEECCCchhhH----HH--HHHHHHhcCCceEEEECCCCCHHHHH
Confidence 6566678999999999999999999999999 689999886 3211 00 011111 1347889999999999998
Q ss_pred HHhc-------CCCEEEEcCCC-CC-------CCCchhhhHHHHHHHHHHHHHHHHh----cC--C---CEEEEecCccc
Q 047227 79 QALQ-------GAEVVFHMAAP-NS-------SINNHKLHHSVNVEGTKNVIDACAE----LK--V---KRLIYTSSPSV 134 (485)
Q Consensus 79 ~~~~-------~~d~Vih~aa~-~~-------~~~~~~~~~~~nv~~t~~ll~a~~~----~~--v---~r~V~~SS~~v 134 (485)
++++ ++|+|||+|+. .. ..++++..+++|+.++.++.+++.. .+ . +++|++||...
T Consensus 74 ~~~~~~~~~~g~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~ 153 (258)
T 3afn_B 74 QLVDEFVAKFGGIDVLINNAGGLVGRKPLPEIDDTFYDAVMDANIRSVVMTTKFALPHLAAAAKASGQTSAVISTGSIAG 153 (258)
T ss_dssp HHHHHHHHHHSSCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTSCEEEEEECCTHH
T ss_pred HHHHHHHHHcCCCCEEEECCCCcCCcCccccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcccCCCCCcEEEEecchhh
Confidence 8886 79999999995 22 1123566889999999999887643 22 2 68999999776
Q ss_pred cccCCCCcCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCChHHHHHHHHcCCCe
Q 047227 135 VFDGVHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSK 211 (485)
Q Consensus 135 y~~~~~~~~~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~ 211 (485)
+.. +..+...|+.+|...|.+.+.++.+ .|++++++||+.++++......+.+...+..+.+
T Consensus 154 ~~~--------------~~~~~~~Y~~sK~a~~~~~~~~~~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~- 218 (258)
T 3afn_B 154 HTG--------------GGPGAGLYGAAKAFLHNVHKNWVDFHTKDGVRFNIVSPGTVDTAFHADKTQDVRDRISNGIP- 218 (258)
T ss_dssp HHC--------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSGGGTTCCHHHHHHHHTTCT-
T ss_pred ccC--------------CCCCchHHHHHHHHHHHHHHHHHHhhcccCeEEEEEeCCCcccccccccCHHHHHHHhccCC-
Confidence 531 1235678999999999999887644 4899999999999998654433444444444322
Q ss_pred EEecCCCceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCC
Q 047227 212 FIIGDGNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNME 261 (485)
Q Consensus 212 ~~~g~g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~ 261 (485)
...+++++|+|++++.++..... ....|+.|++.++.
T Consensus 219 --------~~~~~~~~dva~~~~~l~~~~~~-----~~~~G~~~~v~gg~ 255 (258)
T 3afn_B 219 --------MGRFGTAEEMAPAFLFFASHLAS-----GYITGQVLDINGGQ 255 (258)
T ss_dssp --------TCSCBCGGGTHHHHHHHHCHHHH-----TTCCSEEEEESTTS
T ss_pred --------CCcCCCHHHHHHHHHHHhCcchh-----ccccCCEEeECCCc
Confidence 34689999999999988652111 02468999998864
|
| >3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans} | Back alignment and structure |
|---|
Probab=99.89 E-value=4.7e-22 Score=189.33 Aligned_cols=222 Identities=19% Similarity=0.172 Sum_probs=162.5
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhh-cCCCeEEEEecCCCHHHHHHHhc-
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEAL-RSGRAHYVSFDLRHKAQVLQALQ- 82 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~- 82 (485)
.++|+||||||+|+||+++++.|+++| ++|++++|....... ...... ...++.++.+|++|++++.++++
T Consensus 11 l~~k~vlItGasggiG~~la~~l~~~G-~~V~~~~r~~~~~~~------~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~ 83 (260)
T 3awd_A 11 LDNRVAIVTGGAQNIGLACVTALAEAG-ARVIIADLDEAMATK------AVEDLRMEGHDVSSVVMDVTNTESVQNAVRS 83 (260)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHH------HHHHHHHTTCCEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCC-CEEEEEeCCHHHHHH------HHHHHHhcCCceEEEEecCCCHHHHHHHHHH
Confidence 356899999999999999999999999 699999887432110 011111 13578999999999999888875
Q ss_pred ------CCCEEEEcCCCCC--------CCCchhhhHHHHHHHHHHHHHHHHh----cCCCEEEEecCccccccCCCCcCC
Q 047227 83 ------GAEVVFHMAAPNS--------SINNHKLHHSVNVEGTKNVIDACAE----LKVKRLIYTSSPSVVFDGVHGIIN 144 (485)
Q Consensus 83 ------~~d~Vih~aa~~~--------~~~~~~~~~~~nv~~t~~ll~a~~~----~~v~r~V~~SS~~vy~~~~~~~~~ 144 (485)
++|+|||+|+... ..+++...+++|+.++.++++++.. .+.+++|++||...+...
T Consensus 84 ~~~~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~------ 157 (260)
T 3awd_A 84 VHEQEGRVDILVACAGICISEVKAEDMTDGQWLKQVDINLNGMFRSCQAVGRIMLEQKQGVIVAIGSMSGLIVN------ 157 (260)
T ss_dssp HHHHHSCCCEEEECCCCCCCSCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCC------
T ss_pred HHHHcCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCCEEEEEecchhcccC------
Confidence 6899999999432 1223467899999999999988764 356799999997665210
Q ss_pred CCCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCC-CC-hHHHHHHHHcCCCeEEecCCCc
Q 047227 145 GNEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDR-LL-VPSLVAAARAGKSKFIIGDGNN 219 (485)
Q Consensus 145 ~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~-~~-~~~~~~~~~~g~~~~~~g~g~~ 219 (485)
+..+...|+.+|...|.+++.++.+ .|++++++||+.++++... .. .+.+......+.+
T Consensus 158 -------~~~~~~~Y~~sK~a~~~~~~~l~~e~~~~gi~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~~--------- 221 (260)
T 3awd_A 158 -------RPQQQAAYNASKAGVHQYIRSLAAEWAPHGIRANAVAPTYIETTLTRFGMEKPELYDAWIAGTP--------- 221 (260)
T ss_dssp -------SSSCCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCTTTHHHHTCHHHHHHHHHTCT---------
T ss_pred -------CCCCccccHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeeeeccchhhcccCChHHHHHHHhcCC---------
Confidence 1234478999999999999887755 6899999999999998643 11 1233333333322
Q ss_pred eeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCC
Q 047227 220 VYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNME 261 (485)
Q Consensus 220 ~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~ 261 (485)
...+++++|+|++++.++.... ....|+.|++.++.
T Consensus 222 ~~~~~~~~dva~~~~~l~~~~~------~~~~G~~~~v~gg~ 257 (260)
T 3awd_A 222 MGRVGQPDEVASVVQFLASDAA------SLMTGAIVNVDAGF 257 (260)
T ss_dssp TSSCBCHHHHHHHHHHHHSGGG------TTCCSCEEEESTTT
T ss_pred cCCCCCHHHHHHHHHHHhCchh------ccCCCcEEEECCce
Confidence 2358899999999998865321 22568899998864
|
| >1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.89 E-value=1.1e-22 Score=195.90 Aligned_cols=234 Identities=14% Similarity=0.090 Sum_probs=160.0
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhh----hcCCCeEEEEecCCCHHHHHHH
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEA----LRSGRAHYVSFDLRHKAQVLQA 80 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~----~~~~~v~~~~~Dl~d~~~l~~~ 80 (485)
.++|++|||||+|+||+++++.|+++| ++|++++|....... ..... ....++.++.+|++|++++.++
T Consensus 4 ~~~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~------~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 76 (278)
T 1spx_A 4 FAEKVAIITGSSNGIGRATAVLFAREG-AKVTITGRHAERLEE------TRQQILAAGVSEQNVNSVVADVTTDAGQDEI 76 (278)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHH------HHHHHHHTTCCGGGEEEEECCTTSHHHHHHH
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCC-CEEEEEeCCHHHHHH------HHHHHHhcccCCCceeEEecccCCHHHHHHH
Confidence 457899999999999999999999999 699999887432110 01111 0124688999999999998888
Q ss_pred hc-------CCCEEEEcCCCCC-----------CCCchhhhHHHHHHHHHHHHHHHHhc----CCCEEEEecCccc-ccc
Q 047227 81 LQ-------GAEVVFHMAAPNS-----------SINNHKLHHSVNVEGTKNVIDACAEL----KVKRLIYTSSPSV-VFD 137 (485)
Q Consensus 81 ~~-------~~d~Vih~aa~~~-----------~~~~~~~~~~~nv~~t~~ll~a~~~~----~v~r~V~~SS~~v-y~~ 137 (485)
++ ++|+|||+||... +.++++..+++|+.++.++.+++... + +++|++||... +.
T Consensus 77 ~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~-g~iv~isS~~~~~~- 154 (278)
T 1spx_A 77 LSTTLGKFGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIALTKKAVPHLSSTK-GEIVNISSIASGLH- 154 (278)
T ss_dssp HHHHHHHHSCCCEEEECCC-------------CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEECCTTSSSS-
T ss_pred HHHHHHHcCCCCEEEECCCCCCCcccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcC-CeEEEEeccccccc-
Confidence 76 7999999999321 33456778999999999999887764 5 79999999776 42
Q ss_pred CCCCcCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhC---CCCceEEEEecCCcccCCCCCCh---HHH------HHHH
Q 047227 138 GVHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANG---TNGLLTCCIRPSSIFGPGDRLLV---PSL------VAAA 205 (485)
Q Consensus 138 ~~~~~~~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~---~~g~~~~ilRp~~v~Gp~~~~~~---~~~------~~~~ 205 (485)
+..+...|+.+|...|.+.+.++. .+|++++++|||.++++...... +.. ....
T Consensus 155 --------------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~ 220 (278)
T 1spx_A 155 --------------ATPDFPYYSIAKAAIDQYTRNTAIDLIQHGIRVNSISPGLVATGFGSAMGMPEETSKKFYSTMATM 220 (278)
T ss_dssp --------------CCTTSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCCCC--------------HHHHHHH
T ss_pred --------------CCCCccHHHHHHHHHHHHHHHHHHHHHhcCcEEEEEecCcccCccccccccCchhhhhhhHHHHHH
Confidence 123456899999999999888764 36899999999999987532110 001 1111
Q ss_pred HcCCCeEEecCCCceeecccHHHHHHHHHHHHHHhccccchhhc-cCCcEEEeeCCCCccHHHHHHHHHHHc
Q 047227 206 RAGKSKFIIGDGNNVYDFTYVANVAHAHICAERALASEVTVAEK-AAGQAYFVTNMESIKFWEFVSLILEGL 276 (485)
Q Consensus 206 ~~g~~~~~~g~g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~-~~g~~ynv~~~~~~t~~el~~~i~~~~ 276 (485)
.... ....+.+++|+|++++.++... ... ..|+.|++.++..+++.|+++.+.+.+
T Consensus 221 ~~~~---------p~~~~~~~~dvA~~v~~l~s~~------~~~~~tG~~~~vdgG~~~~~~~~~~~~~~~~ 277 (278)
T 1spx_A 221 KECV---------PAGVMGQPQDIAEVIAFLADRK------TSSYIIGHQLVVDGGSSLIMGLHCQDFAKLL 277 (278)
T ss_dssp HHHC---------TTSSCBCHHHHHHHHHHHHCHH------HHTTCCSCEEEESTTGGGC------------
T ss_pred HhcC---------CCcCCCCHHHHHHHHHHHcCcc------ccCcccCcEEEECCCcccccCcccccHHHHh
Confidence 1111 1234789999999999876421 111 468999999999999999999887653
|
| >3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua} | Back alignment and structure |
|---|
Probab=99.89 E-value=5.4e-23 Score=188.21 Aligned_cols=184 Identities=14% Similarity=0.089 Sum_probs=146.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcC---
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQG--- 83 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~--- 83 (485)
+|++|||||+|+||+++++.|+ +| ++|++++|... .+.+|++|++++.+++++
T Consensus 3 kM~vlVtGasg~iG~~~~~~l~-~g-~~V~~~~r~~~----------------------~~~~D~~~~~~~~~~~~~~~~ 58 (202)
T 3d7l_A 3 AMKILLIGASGTLGSAVKERLE-KK-AEVITAGRHSG----------------------DVTVDITNIDSIKKMYEQVGK 58 (202)
T ss_dssp SCEEEEETTTSHHHHHHHHHHT-TT-SEEEEEESSSS----------------------SEECCTTCHHHHHHHHHHHCC
T ss_pred CcEEEEEcCCcHHHHHHHHHHH-CC-CeEEEEecCcc----------------------ceeeecCCHHHHHHHHHHhCC
Confidence 3689999999999999999999 99 69999987642 467999999999988875
Q ss_pred CCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHHHhc---CCCEEEEecCccccccCCCCcCCCCCCCCCCC
Q 047227 84 AEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDACAEL---KVKRLIYTSSPSVVFDGVHGIINGNEALPYPP 153 (485)
Q Consensus 84 ~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~~~~---~v~r~V~~SS~~vy~~~~~~~~~~~e~~~~~~ 153 (485)
+|+|||+|+... ..+++...+++|+.++.++++++.+. + +++|++||...+. +.
T Consensus 59 ~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~iv~~sS~~~~~---------------~~ 122 (202)
T 3d7l_A 59 VDAIVSATGSATFSPLTELTPEKNAVTISSKLGGQINLVLLGIDSLNDK-GSFTLTTGIMMED---------------PI 122 (202)
T ss_dssp EEEEEECCCCCCCCCGGGCCHHHHHHHHHTTTHHHHHHHHTTGGGEEEE-EEEEEECCGGGTS---------------CC
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHhhccHHHHHHHHHHHHHhccC-CEEEEEcchhhcC---------------CC
Confidence 899999999322 11334567899999999999999876 4 6999999976652 12
Q ss_pred CCCchHHHHHHHHHHHHHHHhCCC--CceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCceeecccHHHHHH
Q 047227 154 KHNDFYSATKAEGEALVIKANGTN--GLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAH 231 (485)
Q Consensus 154 ~~~~~Y~~sK~~~E~~~~~~~~~~--g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~D~a~ 231 (485)
.+...|+.+|...|.+++.++.+. +++++++||+.++++.. . . +++...+++++++|+|+
T Consensus 123 ~~~~~Y~~sK~~~~~~~~~~~~e~~~gi~v~~v~pg~v~~~~~-----~----~---------~~~~~~~~~~~~~dva~ 184 (202)
T 3d7l_A 123 VQGASAAMANGAVTAFAKSAAIEMPRGIRINTVSPNVLEESWD-----K----L---------EPFFEGFLPVPAAKVAR 184 (202)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTSCSTTCEEEEEEECCBGGGHH-----H----H---------GGGSTTCCCBCHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHHHHHHccCCeEEEEEecCccCCchh-----h----h---------hhhccccCCCCHHHHHH
Confidence 455789999999999999988654 89999999999998831 1 0 12223567999999999
Q ss_pred HHHHHHHHhccccchhhccCCcEEEe
Q 047227 232 AHICAERALASEVTVAEKAAGQAYFV 257 (485)
Q Consensus 232 a~~~~~~~~~~~~~~~~~~~g~~ynv 257 (485)
+++.++. . ...|+.||+
T Consensus 185 ~~~~~~~---~------~~~G~~~~v 201 (202)
T 3d7l_A 185 AFEKSVF---G------AQTGESYQV 201 (202)
T ss_dssp HHHHHHH---S------CCCSCEEEE
T ss_pred HHHHhhh---c------cccCceEec
Confidence 9887753 1 156788887
|
| >3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.9e-22 Score=190.94 Aligned_cols=210 Identities=15% Similarity=0.091 Sum_probs=161.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc---
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ--- 82 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 82 (485)
++|++|||||+|+||+++++.|+++| ++|.+++|..... ...++.++.+|++|++++.++++
T Consensus 27 ~~k~vlVTGas~gIG~aia~~l~~~G-~~V~~~~r~~~~~--------------~~~~~~~~~~Dv~d~~~v~~~~~~~~ 91 (260)
T 3un1_A 27 QQKVVVITGASQGIGAGLVRAYRDRN-YRVVATSRSIKPS--------------ADPDIHTVAGDISKPETADRIVREGI 91 (260)
T ss_dssp TCCEEEESSCSSHHHHHHHHHHHHTT-CEEEEEESSCCCC--------------SSTTEEEEESCTTSHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEeCChhhc--------------ccCceEEEEccCCCHHHHHHHHHHHH
Confidence 46899999999999999999999999 6999998865421 12368899999999999888876
Q ss_pred ----CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHH----HhcCCCEEEEecCccccccCCCCcCCCCC
Q 047227 83 ----GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDAC----AELKVKRLIYTSSPSVVFDGVHGIINGNE 147 (485)
Q Consensus 83 ----~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~----~~~~v~r~V~~SS~~vy~~~~~~~~~~~e 147 (485)
++|+|||+||... +.++++..+++|+.++.++.+++ ++.+..++|++||..++..
T Consensus 92 ~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~---------- 161 (260)
T 3un1_A 92 ERFGRIDSLVNNAGVFLAKPFVEMTQEDYDHNLGVNVAGFFHITQRAAAEMLKQGSGHIVSITTSLVDQP---------- 161 (260)
T ss_dssp HHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCTTTTSC----------
T ss_pred HHCCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEEechhhccC----------
Confidence 6999999999322 33456778999999999999987 5666789999999776521
Q ss_pred CCCCCCCCCchHHHHHHHHHHHHHHHhCCC---CceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCceeecc
Q 047227 148 ALPYPPKHNDFYSATKAEGEALVIKANGTN---GLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFT 224 (485)
Q Consensus 148 ~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i 224 (485)
.+..+...|+.||...+.+.+.++.+. |+++.+++||.+++|...... ....... .....+.
T Consensus 162 ---~~~~~~~~Y~~sKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~~---~~~~~~~---------~p~~r~~ 226 (260)
T 3un1_A 162 ---MVGMPSALASLTKGGLNAVTRSLAMEFSRSGVRVNAVSPGVIKTPMHPAET---HSTLAGL---------HPVGRMG 226 (260)
T ss_dssp ---BTTCCCHHHHHHHHHHHHHHHHHHHHTTTTTEEEEEEEECCBCCTTSCGGG---HHHHHTT---------STTSSCB
T ss_pred ---CCCCccHHHHHHHHHHHHHHHHHHHHhCcCCeEEEEEeecCCCCCCCCHHH---HHHHhcc---------CCCCCCc
Confidence 123456789999999999998877554 899999999999998644221 1112222 2334678
Q ss_pred cHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCCCc
Q 047227 225 YVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMESI 263 (485)
Q Consensus 225 ~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~~ 263 (485)
+++|+|++++.+.+ .....|+.+++.++...
T Consensus 227 ~~~dva~av~~L~~--------~~~itG~~i~vdGG~~~ 257 (260)
T 3un1_A 227 EIRDVVDAVLYLEH--------AGFITGEILHVDGGQNA 257 (260)
T ss_dssp CHHHHHHHHHHHHH--------CTTCCSCEEEESTTGGG
T ss_pred CHHHHHHHHHHhcc--------cCCCCCcEEEECCCeec
Confidence 89999999998833 23367999999887644
|
| >3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=3.4e-22 Score=188.85 Aligned_cols=219 Identities=16% Similarity=0.130 Sum_probs=165.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhh--cCCCeEEEEecCCCHHHHHHHhc-
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEAL--RSGRAHYVSFDLRHKAQVLQALQ- 82 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~Dl~d~~~l~~~~~- 82 (485)
++|++|||||+|+||+++++.|+++| ++|.+.++....... + ....+ ...++.++.+|++|.+++.++++
T Consensus 3 ~~k~~lVTGas~gIG~~ia~~l~~~G-~~V~~~~~~~~~~~~---~---~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~ 75 (246)
T 3osu_A 3 MTKSALVTGASRGIGRSIALQLAEEG-YNVAVNYAGSKEKAE---A---VVEEIKAKGVDSFAIQANVADADEVKAMIKE 75 (246)
T ss_dssp CSCEEEETTCSSHHHHHHHHHHHHTT-CEEEEEESSCHHHHH---H---HHHHHHHTTSCEEEEECCTTCHHHHHHHHHH
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCC-CEEEEEeCCCHHHHH---H---HHHHHHhcCCcEEEEEccCCCHHHHHHHHHH
Confidence 35799999999999999999999999 688888765321110 0 11111 23578899999999998888776
Q ss_pred ------CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHH----HhcCCCEEEEecCccccccCCCCcCCC
Q 047227 83 ------GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDAC----AELKVKRLIYTSSPSVVFDGVHGIING 145 (485)
Q Consensus 83 ------~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~----~~~~v~r~V~~SS~~vy~~~~~~~~~~ 145 (485)
+.|++||+||... +.++++..+++|+.++.++++++ ++.+..++|++||...+.
T Consensus 76 ~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~--------- 146 (246)
T 3osu_A 76 VVSQFGSLDVLVNNAGITRDNLLMRMKEQEWDDVIDTNLKGVFNCIQKATPQMLRQRSGAIINLSSVVGAV--------- 146 (246)
T ss_dssp HHHHHSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHH---------
T ss_pred HHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEEcchhhcC---------
Confidence 6899999999321 23456778999999999999998 556677999999987763
Q ss_pred CCCCCCCCCCCchHHHHHHHHHHHHHHHhC---CCCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCceee
Q 047227 146 NEALPYPPKHNDFYSATKAEGEALVIKANG---TNGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYD 222 (485)
Q Consensus 146 ~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~---~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~ 222 (485)
+..+...|+.+|...+.+.+.++. .+|+++.+++||.+.++......+.+......+.+ ...
T Consensus 147 ------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~p---------~~r 211 (246)
T 3osu_A 147 ------GNPGQANYVATKAGVIGLTKSAARELASRGITVNAVAPGFIVSDMTDALSDELKEQMLTQIP---------LAR 211 (246)
T ss_dssp ------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBGGGCCSCSCHHHHHHHHTTCT---------TCS
T ss_pred ------CCCCChHHHHHHHHHHHHHHHHHHHhcccCeEEEEEEECCCcCCcccccCHHHHHHHHhcCC---------CCC
Confidence 123567899999999999887765 46899999999999998766555665555554433 245
Q ss_pred cccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCC
Q 047227 223 FTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNME 261 (485)
Q Consensus 223 ~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~ 261 (485)
+.+++|+|++++.++.... ....|+.|++.++.
T Consensus 212 ~~~~~dva~~v~~l~s~~~------~~itG~~i~vdgG~ 244 (246)
T 3osu_A 212 FGQDTDIANTVAFLASDKA------KYITGQTIHVNGGM 244 (246)
T ss_dssp CBCHHHHHHHHHHHTSGGG------TTCCSCEEEESTTS
T ss_pred CcCHHHHHHHHHHHhCccc------cCCCCCEEEeCCCc
Confidence 7789999999988754221 22569999998864
|
| >1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=7.3e-23 Score=199.48 Aligned_cols=236 Identities=16% Similarity=0.084 Sum_probs=170.6
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhh--cCCCeEEEEecCCCHHHHHHHhc
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEAL--RSGRAHYVSFDLRHKAQVLQALQ 82 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~Dl~d~~~l~~~~~ 82 (485)
.++|++|||||+|+||+++++.|+++| ++|++++|....... ...... ...++.++.+|++|.+++.++++
T Consensus 24 l~~k~vlITGasggiG~~la~~L~~~G-~~V~~~~r~~~~~~~------~~~~l~~~~~~~~~~~~~Dl~~~~~~~~~~~ 96 (302)
T 1w6u_A 24 FQGKVAFITGGGTGLGKGMTTLLSSLG-AQCVIASRKMDVLKA------TAEQISSQTGNKVHAIQCDVRDPDMVQNTVS 96 (302)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHH------HHHHHHHHHSSCEEEEECCTTCHHHHHHHHH
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEeCCHHHHHH------HHHHHHHhcCCceEEEEeCCCCHHHHHHHHH
Confidence 456899999999999999999999999 689999887532110 011110 14578999999999998888775
Q ss_pred -------CCCEEEEcCCCC-------CCCCchhhhHHHHHHHHHHHHHHHHh-----cCCCEEEEecCccccccCCCCcC
Q 047227 83 -------GAEVVFHMAAPN-------SSINNHKLHHSVNVEGTKNVIDACAE-----LKVKRLIYTSSPSVVFDGVHGII 143 (485)
Q Consensus 83 -------~~d~Vih~aa~~-------~~~~~~~~~~~~nv~~t~~ll~a~~~-----~~v~r~V~~SS~~vy~~~~~~~~ 143 (485)
++|+|||+||.. ...++++..+++|+.++.++.+++.. .+.+++|++||...+.
T Consensus 97 ~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~isS~~~~~------- 169 (302)
T 1w6u_A 97 ELIKVAGHPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVTLEIGKQLIKAQKGAAFLSITTIYAET------- 169 (302)
T ss_dssp HHHHHTCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTHHHH-------
T ss_pred HHHHHcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCEEEEEccccccc-------
Confidence 369999999932 22345677899999999999888754 2457999999987763
Q ss_pred CCCCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCC-CCChH--HHHHHHHcCCCeEEecCC
Q 047227 144 NGNEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGD-RLLVP--SLVAAARAGKSKFIIGDG 217 (485)
Q Consensus 144 ~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~-~~~~~--~~~~~~~~g~~~~~~g~g 217 (485)
+..+...|+.+|...|.+.+.++.+ .|++++++|||.+++++. ....+ ........+.
T Consensus 170 --------~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~-------- 233 (302)
T 1w6u_A 170 --------GSGFVVPSASAKAGVEAMSKSLAAEWGKYGMRFNVIQPGPIKTKGAFSRLDPTGTFEKEMIGRI-------- 233 (302)
T ss_dssp --------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCC------CCTTSHHHHHHHTTC--------
T ss_pred --------CCCCcchhHHHHHHHHHHHHHHHHHhhhcCcEEEEEeeccCCCcchhhhcccchhhHHHHHhcC--------
Confidence 1245678999999999999887755 789999999999998732 11101 1112222222
Q ss_pred CceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCCCccHHHHHHHHHHHcC
Q 047227 218 NNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLG 277 (485)
Q Consensus 218 ~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~~t~~el~~~i~~~~g 277 (485)
....+.+++|+|++++.++.... ....|+.|++.++..+++.|+++.+.+..|
T Consensus 234 -p~~~~~~~~dva~~~~~l~~~~~------~~~~G~~~~v~gg~~~~~~~~~~~~~~~~g 286 (302)
T 1w6u_A 234 -PCGRLGTVEELANLAAFLCSDYA------SWINGAVIKFDGGEEVLISGEFNDLRKVTK 286 (302)
T ss_dssp -TTSSCBCHHHHHHHHHHHTSGGG------TTCCSCEEEESTTHHHHHHSTTGGGGGCCH
T ss_pred -CcCCCCCHHHHHHHHHHHcCCcc------cccCCCEEEECCCeeeccCCccccchhhcc
Confidence 12357889999999998864211 124689999999988888888777766554
|
| >3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans} | Back alignment and structure |
|---|
Probab=99.89 E-value=6.2e-23 Score=197.93 Aligned_cols=245 Identities=19% Similarity=0.136 Sum_probs=174.6
Q ss_pred CCCCCCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhh-cCCCeEEEEecCCCHHHHHH
Q 047227 1 MSGEENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEAL-RSGRAHYVSFDLRHKAQVLQ 79 (485)
Q Consensus 1 M~~~~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~ 79 (485)
|+...++|++|||||+|+||+++++.|+++| ++|.+++|..........+ +.... ...++.++.+|++|++++.+
T Consensus 5 m~~~l~~k~vlVTGas~gIG~aia~~l~~~G-~~V~~~~r~~~~~~~~~~~---l~~~~~~~~~~~~~~~Dv~~~~~v~~ 80 (281)
T 3svt_A 5 MQLSFQDRTYLVTGGGSGIGKGVAAGLVAAG-ASVMIVGRNPDKLAGAVQE---LEALGANGGAIRYEPTDITNEDETAR 80 (281)
T ss_dssp ---CCTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHH---HHTTCCSSCEEEEEECCTTSHHHHHH
T ss_pred CccCcCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHH---HHHhCCCCceEEEEeCCCCCHHHHHH
Confidence 4445567899999999999999999999999 6899998875421110000 11100 11268899999999998887
Q ss_pred Hhc-------CCCEEEEcCCC-CC-------CCCchhhhHHHHHHHHHHHHHHHHhc----CCCEEEEecCccccccCCC
Q 047227 80 ALQ-------GAEVVFHMAAP-NS-------SINNHKLHHSVNVEGTKNVIDACAEL----KVKRLIYTSSPSVVFDGVH 140 (485)
Q Consensus 80 ~~~-------~~d~Vih~aa~-~~-------~~~~~~~~~~~nv~~t~~ll~a~~~~----~v~r~V~~SS~~vy~~~~~ 140 (485)
+++ +.|++||+||. .. +.++++..+++|+.++.++++++... +-.++|++||...+.
T Consensus 81 ~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~---- 156 (281)
T 3svt_A 81 AVDAVTAWHGRLHGVVHCAGGSENIGPITQVDSEAWRRTVDLNVNGTMYVLKHAAREMVRGGGGSFVGISSIAASN---- 156 (281)
T ss_dssp HHHHHHHHHSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHS----
T ss_pred HHHHHHHHcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEeCHHHcC----
Confidence 775 58999999994 21 22345678999999999999987654 345999999988763
Q ss_pred CcCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCC--hHHHHHHHHcCCCeEEec
Q 047227 141 GIINGNEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLL--VPSLVAAARAGKSKFIIG 215 (485)
Q Consensus 141 ~~~~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~--~~~~~~~~~~g~~~~~~g 215 (485)
+..+...|+.||+..|.+.+.++.+ .++++.+++||.++++..... ............
T Consensus 157 -----------~~~~~~~Y~asK~a~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~------ 219 (281)
T 3svt_A 157 -----------THRWFGAYGVTKSAVDHLMQLAADELGASWVRVNSIRPGLIRTDLVAAITESAELSSDYAMCT------ 219 (281)
T ss_dssp -----------CCTTCTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGGGHHHHTCHHHHHHHHHHC------
T ss_pred -----------CCCCChhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCcCcCcchhhcccCHHHHHHHHhcC------
Confidence 1245678999999999999887654 469999999999998743211 111222222222
Q ss_pred CCCceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCCCcc-HHHHHHHHHHHcCCC
Q 047227 216 DGNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMESIK-FWEFVSLILEGLGYQ 279 (485)
Q Consensus 216 ~g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~~t-~~el~~~i~~~~g~~ 279 (485)
....+.+++|+|++++.++.... .-..|+.|++.++..++ ..|+.+.+.+.+|.+
T Consensus 220 ---p~~r~~~~~dva~~~~~l~s~~~------~~itG~~~~vdgG~~~~~~~~~~~~~~~~~~~~ 275 (281)
T 3svt_A 220 ---PLPRQGEVEDVANMAMFLLSDAA------SFVTGQVINVDGGQMLRRGPDFSAMLEPVFGRD 275 (281)
T ss_dssp ---SSSSCBCHHHHHHHHHHHHSGGG------TTCCSCEEEESTTGGGSCCCCCHHHHHHHHCTT
T ss_pred ---CCCCCCCHHHHHHHHHHHhCccc------CCCCCCEEEeCCChhcccCCcchhccccccCCc
Confidence 22356789999999998865221 22579999999887666 778888888888764
|
| >3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.1e-21 Score=186.59 Aligned_cols=223 Identities=19% Similarity=0.157 Sum_probs=157.9
Q ss_pred CCCCCCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHH
Q 047227 1 MSGEENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQA 80 (485)
Q Consensus 1 M~~~~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~ 80 (485)
|+-..++|++|||||+|+||+++++.|.++| ++|.+++|..........+ + ..++.++.+|++|++++.++
T Consensus 1 M~~~l~~k~~lVTGas~gIG~aia~~l~~~G-~~V~~~~r~~~~~~~~~~~-------~-~~~~~~~~~Dv~~~~~v~~~ 71 (257)
T 3tpc_A 1 MVMQLKSRVFIVTGASSGLGAAVTRMLAQEG-ATVLGLDLKPPAGEEPAAE-------L-GAAVRFRNADVTNEADATAA 71 (257)
T ss_dssp ---CCTTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESSCC--------------------CEEEECCTTCHHHHHHH
T ss_pred CccccCCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEeCChHHHHHHHHH-------h-CCceEEEEccCCCHHHHHHH
Confidence 5545667899999999999999999999999 6899999876432211111 1 34688999999999988888
Q ss_pred hc-------CCCEEEEcCCCCC-----------CCCchhhhHHHHHHHHHHHHHHHHhc----------CCCEEEEecCc
Q 047227 81 LQ-------GAEVVFHMAAPNS-----------SINNHKLHHSVNVEGTKNVIDACAEL----------KVKRLIYTSSP 132 (485)
Q Consensus 81 ~~-------~~d~Vih~aa~~~-----------~~~~~~~~~~~nv~~t~~ll~a~~~~----------~v~r~V~~SS~ 132 (485)
++ +.|++||+||... ..++++..+++|+.++.++.+++... +..++|++||.
T Consensus 72 ~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~~~~~g~iv~isS~ 151 (257)
T 3tpc_A 72 LAFAKQEFGHVHGLVNCAGTAPGEKILGRSGPHALDSFARTVAVNLIGTFNMIRLAAEVMSQGEPDADGERGVIVNTASI 151 (257)
T ss_dssp HHHHHHHHSCCCEEEECCCCCCCCCSEETTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECCT
T ss_pred HHHHHHHcCCCCEEEECCCCCCCCccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhccccCCCCCeEEEEEech
Confidence 76 6999999999431 22456778999999999999998764 34689999998
Q ss_pred cccccCCCCcCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCChHHHHHHHHcCC
Q 047227 133 SVVFDGVHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGK 209 (485)
Q Consensus 133 ~vy~~~~~~~~~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~ 209 (485)
..+. +..+...|+.||...+.+.+.++.+ +|+++.+++||.+.++...............
T Consensus 152 ~~~~---------------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~-- 214 (257)
T 3tpc_A 152 AAFD---------------GQIGQAAYAASKGGVAALTLPAARELARFGIRVVTIAPGIFDTPMMAGMPQDVQDALAA-- 214 (257)
T ss_dssp HHHH---------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBSCC--------------C--
T ss_pred hhcc---------------CCCCCcchHHHHHHHHHHHHHHHHHHHHcCeEEEEEEeCCCCChhhccCCHHHHHHHHh--
Confidence 8764 1235678999999999998877654 6899999999999987543222222111111
Q ss_pred CeEEecCCCce-eecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCCCcc
Q 047227 210 SKFIIGDGNNV-YDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMESIK 264 (485)
Q Consensus 210 ~~~~~g~g~~~-~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~~t 264 (485)
.... ..+.+++|+|++++.++. .....|+.+++.++..++
T Consensus 215 -------~~p~~~r~~~~~dva~~v~~l~s--------~~~itG~~i~vdGG~~~~ 255 (257)
T 3tpc_A 215 -------SVPFPPRLGRAEEYAALVKHICE--------NTMLNGEVIRLDGALRMA 255 (257)
T ss_dssp -------CSSSSCSCBCHHHHHHHHHHHHH--------CTTCCSCEEEESTTCCC-
T ss_pred -------cCCCCCCCCCHHHHHHHHHHHcc--------cCCcCCcEEEECCCccCC
Confidence 1122 457899999999998876 233779999998876543
|
| >1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=4.2e-22 Score=189.82 Aligned_cols=218 Identities=20% Similarity=0.191 Sum_probs=159.9
Q ss_pred CCCCCCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHH
Q 047227 1 MSGEENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQA 80 (485)
Q Consensus 1 M~~~~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~ 80 (485)
|+...++|++|||||+|+||+++++.|+++| ++|++++|....... ....+ ..++.++.+|++|++++.++
T Consensus 1 M~~~l~~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~-------~~~~~-~~~~~~~~~D~~~~~~v~~~ 71 (260)
T 1nff_A 1 MSGRLTGKVALVSGGARGMGASHVRAMVAEG-AKVVFGDILDEEGKA-------MAAEL-ADAARYVHLDVTQPAQWKAA 71 (260)
T ss_dssp -CCTTTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHH-------HHHHT-GGGEEEEECCTTCHHHHHHH
T ss_pred CCCCCCCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHH-------HHHHh-hcCceEEEecCCCHHHHHHH
Confidence 7666778999999999999999999999999 689999887532110 11111 12488899999999998888
Q ss_pred hc-------CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHH----HHhcCCCEEEEecCccccccCCCCc
Q 047227 81 LQ-------GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDA----CAELKVKRLIYTSSPSVVFDGVHGI 142 (485)
Q Consensus 81 ~~-------~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a----~~~~~v~r~V~~SS~~vy~~~~~~~ 142 (485)
++ ++|+|||+||... +.++++..+++|+.++.++.++ +++.+.+++|++||...+..
T Consensus 72 ~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~----- 146 (260)
T 1nff_A 72 VDTAVTAFGGLHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEAGRGSIINISSIEGLAG----- 146 (260)
T ss_dssp HHHHHHHHSCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSC-----
T ss_pred HHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEeehhhcCC-----
Confidence 86 7999999999322 2335677899999999655544 55567789999999877631
Q ss_pred CCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCc
Q 047227 143 INGNEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNN 219 (485)
Q Consensus 143 ~~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~ 219 (485)
..+...|+.+|...|.+.+.++.+ .|++++++|||.++++... . ...... ...
T Consensus 147 ----------~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~-~---------~~~~~~----~~~ 202 (260)
T 1nff_A 147 ----------TVACHGYTATKFAVRGLTKSTALELGPSGIRVNSIHPGLVKTPMTD-W---------VPEDIF----QTA 202 (260)
T ss_dssp ----------CTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSGGGT-T---------SCTTCS----CCS
T ss_pred ----------CCCchhHHHHHHHHHHHHHHHHHHhCccCcEEEEEEeCCCCCCccc-c---------chhhHH----hCc
Confidence 234578999999999999887654 6899999999999988532 1 001110 112
Q ss_pred eeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCCC
Q 047227 220 VYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMES 262 (485)
Q Consensus 220 ~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~ 262 (485)
...+.+++|+|++++.++.... ....|+.|++.++..
T Consensus 203 ~~~~~~~~dvA~~v~~l~s~~~------~~~~G~~~~v~gG~~ 239 (260)
T 1nff_A 203 LGRAAEPVEVSNLVVYLASDES------SYSTGAEFVVDGGTV 239 (260)
T ss_dssp SSSCBCHHHHHHHHHHHHSGGG------TTCCSCEEEESTTGG
T ss_pred cCCCCCHHHHHHHHHHHhCccc------cCCcCCEEEECCCee
Confidence 3457899999999998865211 125689999988753
|
| >3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.88 E-value=1.1e-21 Score=188.18 Aligned_cols=221 Identities=18% Similarity=0.133 Sum_probs=166.2
Q ss_pred CCCCCCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHH
Q 047227 1 MSGEENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQA 80 (485)
Q Consensus 1 M~~~~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~ 80 (485)
|+...++|++|||||+|+||+++++.|.++| ++|.+.+|...... + ....+ ..++.++.+|++|++++.++
T Consensus 5 m~~~l~~k~vlVTGas~gIG~aia~~l~~~G-~~V~~~~r~~~~~~----~---~~~~~-~~~~~~~~~Dv~~~~~v~~~ 75 (271)
T 3tzq_B 5 MTAELENKVAIITGACGGIGLETSRVLARAG-ARVVLADLPETDLA----G---AAASV-GRGAVHHVVDLTNEVSVRAL 75 (271)
T ss_dssp --CTTTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECTTSCHH----H---HHHHH-CTTCEEEECCTTCHHHHHHH
T ss_pred CCcCCCCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEcCCHHHHH----H---HHHHh-CCCeEEEECCCCCHHHHHHH
Confidence 5556678999999999999999999999999 68999988754211 1 11111 45788999999999998888
Q ss_pred hc-------CCCEEEEcCCCC-C--------CCCchhhhHHHHHHHHHHHHHHH----HhcCCCEEEEecCccccccCCC
Q 047227 81 LQ-------GAEVVFHMAAPN-S--------SINNHKLHHSVNVEGTKNVIDAC----AELKVKRLIYTSSPSVVFDGVH 140 (485)
Q Consensus 81 ~~-------~~d~Vih~aa~~-~--------~~~~~~~~~~~nv~~t~~ll~a~----~~~~v~r~V~~SS~~vy~~~~~ 140 (485)
++ +.|++||+|+.. . +.++++..+++|+.++.++.+++ ++.+..++|++||...+.
T Consensus 76 ~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~---- 151 (271)
T 3tzq_B 76 IDFTIDTFGRLDIVDNNAAHSDPADMLVTQMTVDVWDDTFTVNARGTMLMCKYAIPRLISAGGGAIVNISSATAHA---- 151 (271)
T ss_dssp HHHHHHHHSCCCEEEECCCCCCTTCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTS----
T ss_pred HHHHHHHcCCCCEEEECCCCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEECCHHHcC----
Confidence 76 699999999943 1 22345678999999999999998 666778999999987763
Q ss_pred CcCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCC-CChHHHHHHHHcCCCeEEecC
Q 047227 141 GIINGNEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDR-LLVPSLVAAARAGKSKFIIGD 216 (485)
Q Consensus 141 ~~~~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~-~~~~~~~~~~~~g~~~~~~g~ 216 (485)
+..+...|+.+|...+.+.+.++.+ +|+++.+++||.+++|... ..-...........+
T Consensus 152 -----------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~------ 214 (271)
T 3tzq_B 152 -----------AYDMSTAYACTKAAIETLTRYVATQYGRHGVRCNAIAPGLVRTPRLEVGLPQPIVDIFATHHL------ 214 (271)
T ss_dssp -----------BCSSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCTTTC---CHHHHHHHHTTST------
T ss_pred -----------CCCCChHHHHHHHHHHHHHHHHHHHHhhcCEEEEEEEeCCCcCccccccCCHHHHHHHHhcCC------
Confidence 1345678999999999999887765 6899999999999998654 222333333333322
Q ss_pred CCceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCC
Q 047227 217 GNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNM 260 (485)
Q Consensus 217 g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~ 260 (485)
...+..++|+|++++.++.... .-..|+.+++.++
T Consensus 215 ---~~r~~~p~dvA~~v~~L~s~~~------~~itG~~i~vdGG 249 (271)
T 3tzq_B 215 ---AGRIGEPHEIAELVCFLASDRA------AFITGQVIAADSG 249 (271)
T ss_dssp ---TSSCBCHHHHHHHHHHHHSGGG------TTCCSCEEEESTT
T ss_pred ---CCCCcCHHHHHHHHHHHhCccc------CCcCCCEEEECCC
Confidence 2346789999999998865321 2267999999887
|
| >2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum} | Back alignment and structure |
|---|
Probab=99.88 E-value=1e-21 Score=185.58 Aligned_cols=219 Identities=12% Similarity=0.069 Sum_probs=150.2
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEe-ecCCccccCCccchhhhhhhh--cCCCeEEEEecCCCHHHHHHHh
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIA-DLSDSIALEPHEEQGILGEAL--RSGRAHYVSFDLRHKAQVLQAL 81 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~-~r~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~Dl~d~~~l~~~~ 81 (485)
.++|++|||||+|+||+++++.|+++| ++|+++ +|..... +. ....+ ...++.++.+|++|++++.+++
T Consensus 3 l~~~~vlItGasggiG~~~a~~l~~~G-~~V~~~~~r~~~~~----~~---~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 74 (247)
T 2hq1_A 3 LKGKTAIVTGSSRGLGKAIAWKLGNMG-ANIVLNGSPASTSL----DA---TAEEFKAAGINVVVAKGDVKNPEDVENMV 74 (247)
T ss_dssp TTTCEEEESSCSSHHHHHHHHHHHHTT-CEEEEEECTTCSHH----HH---HHHHHHHTTCCEEEEESCTTSHHHHHHHH
T ss_pred CCCcEEEEECCCchHHHHHHHHHHHCC-CEEEEEcCcCHHHH----HH---HHHHHHhcCCcEEEEECCCCCHHHHHHHH
Confidence 456899999999999999999999999 588888 4443211 00 11111 1357899999999999888877
Q ss_pred c-------CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHHHh----cCCCEEEEecCccccccCCCCcC
Q 047227 82 Q-------GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDACAE----LKVKRLIYTSSPSVVFDGVHGII 143 (485)
Q Consensus 82 ~-------~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~~~----~~v~r~V~~SS~~vy~~~~~~~~ 143 (485)
+ ++|+|||+||... +.++++..+++|+.++.++.+++.+ .+.+++|++||...+.
T Consensus 75 ~~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~------- 147 (247)
T 2hq1_A 75 KTAMDAFGRIDILVNNAGITRDTLMLKMSEKDWDDVLNTNLKSAYLCTKAVSKIMLKQKSGKIINITSIAGII------- 147 (247)
T ss_dssp HHHHHHHSCCCEEEECC---------------CHHHHHHTHHHHHHHHHHHHHHHHHHTCEEEEEECC------------
T ss_pred HHHHHhcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcChhhcc-------
Confidence 6 6999999999321 3446778999999998888877664 4678999999975432
Q ss_pred CCCCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCce
Q 047227 144 NGNEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNV 220 (485)
Q Consensus 144 ~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~ 220 (485)
+..+...|+.+|...|.+.+.++.+ .++++++++|+.+.++......+........+. ..
T Consensus 148 --------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~---------~~ 210 (247)
T 2hq1_A 148 --------GNAGQANYAASKAGLIGFTKSIAKEFAAKGIYCNAVAPGIIKTDMTDVLPDKVKEMYLNNI---------PL 210 (247)
T ss_dssp ------------CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHTSCHHHHHHHHTTS---------TT
T ss_pred --------CCCCCcHhHHHHHHHHHHHHHHHHHHHHcCcEEEEEEEEEEeccchhhcchHHHHHHHhhC---------CC
Confidence 1234578999999999999887643 489999999999987532222122222233222 22
Q ss_pred eecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCC
Q 047227 221 YDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNME 261 (485)
Q Consensus 221 ~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~ 261 (485)
..+++++|+|++++.++.... ....|+.|+++++.
T Consensus 211 ~~~~~~~dva~~~~~l~~~~~------~~~~G~~~~v~gG~ 245 (247)
T 2hq1_A 211 KRFGTPEEVANVVGFLASDDS------NYITGQVINIDGGL 245 (247)
T ss_dssp SSCBCHHHHHHHHHHHHSGGG------TTCCSCEEEESTTC
T ss_pred CCCCCHHHHHHHHHHHcCccc------ccccCcEEEeCCCc
Confidence 458899999999988765211 12568899998864
|
| >2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.7e-21 Score=184.29 Aligned_cols=218 Identities=17% Similarity=0.121 Sum_probs=158.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhh--hcCCCeEEEEecCCCHHHHHHHhc--
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEA--LRSGRAHYVSFDLRHKAQVLQALQ-- 82 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~Dl~d~~~l~~~~~-- 82 (485)
+|++|||||+|+||+++++.|+++| ++|++++|....... ..... ....++.++.+|++|++++.++++
T Consensus 2 ~k~vlItGasggiG~~~a~~l~~~G-~~V~~~~r~~~~~~~------~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 74 (250)
T 2cfc_A 2 SRVAIVTGASSGNGLAIATRFLARG-DRVAALDLSAETLEE------TARTHWHAYADKVLRVRADVADEGDVNAAIAAT 74 (250)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHH------HHHHHSTTTGGGEEEEECCTTCHHHHHHHHHHH
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCC-CEEEEEeCCHHHHHH------HHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHH
Confidence 4789999999999999999999999 689999886532110 01111 012468899999999999888876
Q ss_pred -----CCCEEEEcCCCCC----------CCCchhhhHHHHHHHHHHHHHHH----HhcCCCEEEEecCccccccCCCCcC
Q 047227 83 -----GAEVVFHMAAPNS----------SINNHKLHHSVNVEGTKNVIDAC----AELKVKRLIYTSSPSVVFDGVHGII 143 (485)
Q Consensus 83 -----~~d~Vih~aa~~~----------~~~~~~~~~~~nv~~t~~ll~a~----~~~~v~r~V~~SS~~vy~~~~~~~~ 143 (485)
++|+|||+||... ..++++..+++|+.++.++.+++ ++.+.+++|++||...+..
T Consensus 75 ~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~------ 148 (250)
T 2cfc_A 75 MEQFGAIDVLVNNAGITGNSEAGVLHTTPVEQFDKVMAVNVRGIFLGCRAVLPHMLLQGAGVIVNIASVASLVA------ 148 (250)
T ss_dssp HHHHSCCCEEEECCCCCCCTTCCSGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSC------
T ss_pred HHHhCCCCEEEECCCCCCCCCcchhhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCEEEEECChhhccC------
Confidence 6999999999422 12346678899999997766655 4457789999999877631
Q ss_pred CCCCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCC--ChHHHHHHHHcCCCeEEecCCC
Q 047227 144 NGNEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRL--LVPSLVAAARAGKSKFIIGDGN 218 (485)
Q Consensus 144 ~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~--~~~~~~~~~~~g~~~~~~g~g~ 218 (485)
..+...|+.+|...|.+.+.++.+ .|++++++||+.++++.... ..+.+...+..+.+
T Consensus 149 ---------~~~~~~Y~~sK~a~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~-------- 211 (250)
T 2cfc_A 149 ---------FPGRSAYTTSKGAVLQLTKSVAVDYAGSGIRCNAVCPGMIETPMTQWRLDQPELRDQVLARIP-------- 211 (250)
T ss_dssp ---------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSTTTHHHHTSHHHHHHHHTTCT--------
T ss_pred ---------CCCchhHHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCcCccCccccccCCHHHHHHHHhcCC--------
Confidence 235678999999999999887654 48999999999999986432 11223333333222
Q ss_pred ceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCC
Q 047227 219 NVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNME 261 (485)
Q Consensus 219 ~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~ 261 (485)
...+.+++|+|++++.++.... ....|+.+++.++.
T Consensus 212 -~~~~~~~~dva~~~~~l~~~~~------~~~~G~~~~v~gG~ 247 (250)
T 2cfc_A 212 -QKEIGTAAQVADAVMFLAGEDA------TYVNGAALVMDGAY 247 (250)
T ss_dssp -TCSCBCHHHHHHHHHHHHSTTC------TTCCSCEEEESTTG
T ss_pred -CCCCcCHHHHHHHHHHHcCchh------hcccCCEEEECCce
Confidence 2357899999999998865211 12568899998763
|
| >3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.88 E-value=5e-22 Score=191.45 Aligned_cols=230 Identities=14% Similarity=0.156 Sum_probs=159.4
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhh---cCCCeEEEEecCCCHHHHHHH
Q 047227 4 EENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEAL---RSGRAHYVSFDLRHKAQVLQA 80 (485)
Q Consensus 4 ~~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~Dl~d~~~l~~~ 80 (485)
+.++|++|||||+|+||+++++.|+++| ++|.+.+|....... . ....+ ...++.++.+|++|++++.++
T Consensus 22 ~l~~k~~lVTGas~GIG~~ia~~la~~G-~~V~~~~r~~~~~~~---~---~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~ 94 (281)
T 3v2h_A 22 SMMTKTAVITGSTSGIGLAIARTLAKAG-ANIVLNGFGAPDEIR---T---VTDEVAGLSSGTVLHHPADMTKPSEIADM 94 (281)
T ss_dssp CCTTCEEEEETCSSHHHHHHHHHHHHTT-CEEEEECCCCHHHHH---H---HHHHHHTTCSSCEEEECCCTTCHHHHHHH
T ss_pred ccCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCCChHHHH---H---HHHHHhhccCCcEEEEeCCCCCHHHHHHH
Confidence 4567899999999999999999999999 699998885321110 0 11111 145789999999999988887
Q ss_pred hc-------CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHH----HhcCCCEEEEecCccccccCCCCc
Q 047227 81 LQ-------GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDAC----AELKVKRLIYTSSPSVVFDGVHGI 142 (485)
Q Consensus 81 ~~-------~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~----~~~~v~r~V~~SS~~vy~~~~~~~ 142 (485)
++ ++|++||+||... +.++++..+++|+.++.++.+++ ++.+..++|++||...+.
T Consensus 95 ~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~------ 168 (281)
T 3v2h_A 95 MAMVADRFGGADILVNNAGVQFVEKIEDFPVEQWDRIIAVNLSSSFHTIRGAIPPMKKKGWGRIINIASAHGLV------ 168 (281)
T ss_dssp HHHHHHHTSSCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS------
T ss_pred HHHHHHHCCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECCccccc------
Confidence 75 6899999999422 33456778999999999999987 455667999999987653
Q ss_pred CCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCChHHHHHH--HHcCCC-eEEecC
Q 047227 143 INGNEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLLVPSLVAA--ARAGKS-KFIIGD 216 (485)
Q Consensus 143 ~~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~~~~~~~~--~~~g~~-~~~~g~ 216 (485)
+......|+.+|...+.+.+.++.+ .|+++.+++||.+.++......+..... ...... .....+
T Consensus 169 ---------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (281)
T 3v2h_A 169 ---------ASPFKSAYVAAKHGIMGLTKTVALEVAESGVTVNSICPGYVLTPLVEKQIPDQARTRGITEEQVINEVMLK 239 (281)
T ss_dssp ---------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCC----------------------------
T ss_pred ---------CCCCchHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEECCCCcCcchhhhcchhhhhcCCCHHHHHHHHHHh
Confidence 1234578999999999998887644 5899999999999987543222211100 000000 112334
Q ss_pred CCceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCC
Q 047227 217 GNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNME 261 (485)
Q Consensus 217 g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~ 261 (485)
+.....+.+++|+|++++.++.... .-..|+.+++.+|.
T Consensus 240 ~~p~~r~~~~edvA~~v~~L~s~~a------~~itG~~i~vdGG~ 278 (281)
T 3v2h_A 240 GQPTKKFITVEQVASLALYLAGDDA------AQITGTHVSMDGGW 278 (281)
T ss_dssp CCTTCSCBCHHHHHHHHHHHHSSGG------GGCCSCEEEESTTG
T ss_pred cCCCCCccCHHHHHHHHHHHcCCCc------CCCCCcEEEECCCc
Confidence 5566789999999999998865221 22679999998863
|
| >2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B), NAD(P)-binding rossmann-fold structural genomics, NPPSFA; HET: NAP; 2.20A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.88 E-value=5.2e-23 Score=189.00 Aligned_cols=184 Identities=13% Similarity=0.042 Sum_probs=146.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc---CC
Q 047227 8 RLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ---GA 84 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~---~~ 84 (485)
|++|||||+|+||+++++.|+++ +|++++|...... . ....+. . +++.+|++|++++.++++ ++
T Consensus 1 k~vlVtGasg~iG~~la~~l~~~---~V~~~~r~~~~~~----~---~~~~~~--~-~~~~~D~~~~~~~~~~~~~~~~i 67 (207)
T 2yut_A 1 MRVLITGATGGLGGAFARALKGH---DLLLSGRRAGALA----E---LAREVG--A-RALPADLADELEAKALLEEAGPL 67 (207)
T ss_dssp CEEEEETTTSHHHHHHHHHTTTS---EEEEECSCHHHHH----H---HHHHHT--C-EECCCCTTSHHHHHHHHHHHCSE
T ss_pred CEEEEEcCCcHHHHHHHHHHHhC---CEEEEECCHHHHH----H---HHHhcc--C-cEEEeeCCCHHHHHHHHHhcCCC
Confidence 58999999999999999999988 7888888643110 0 111111 2 788999999999999988 79
Q ss_pred CEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCccccccCCCCcCCCCCCCCCCCCCCc
Q 047227 85 EVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVVFDGVHGIINGNEALPYPPKHND 157 (485)
Q Consensus 85 d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy~~~~~~~~~~~e~~~~~~~~~~ 157 (485)
|+|||+|+... ..+++...+++|+.++.++++++++.+.+++|++||..+|. +..+.+
T Consensus 68 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~sS~~~~~---------------~~~~~~ 132 (207)
T 2yut_A 68 DLLVHAVGKAGRASVREAGRDLVEEMLAAHLLTAAFVLKHARFQKGARAVFFGAYPRYV---------------QVPGFA 132 (207)
T ss_dssp EEEEECCCCCCCBCSCC---CHHHHHHHHHHHHHHHHHHHCCEEEEEEEEEECCCHHHH---------------SSTTBH
T ss_pred CEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHhcCCcEEEEEcChhhcc---------------CCCCcc
Confidence 99999999322 34467788999999999999999777778999999988874 234567
Q ss_pred hHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCceeecccHHHHHHHHH
Q 047227 158 FYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHI 234 (485)
Q Consensus 158 ~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~D~a~a~~ 234 (485)
.|+.+|...|.+++.++.+ .|++++++||+.++++.. .+++....++++++|+|++++
T Consensus 133 ~Y~~sK~a~~~~~~~~~~~~~~~gi~v~~v~pg~v~t~~~-------------------~~~~~~~~~~~~~~dva~~~~ 193 (207)
T 2yut_A 133 AYAAAKGALEAYLEAARKELLREGVHLVLVRLPAVATGLW-------------------APLGGPPKGALSPEEAARKVL 193 (207)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTCEEEEECCCCBCSGGG-------------------GGGTSCCTTCBCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhCCEEEEEecCcccCCCc-------------------cccCCCCCCCCCHHHHHHHHH
Confidence 8999999999999887654 689999999999998741 012234578999999999999
Q ss_pred HHHH
Q 047227 235 CAER 238 (485)
Q Consensus 235 ~~~~ 238 (485)
.+++
T Consensus 194 ~~~~ 197 (207)
T 2yut_A 194 EGLF 197 (207)
T ss_dssp HHHC
T ss_pred HHHh
Confidence 8875
|
| >1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A | Back alignment and structure |
|---|
Probab=99.88 E-value=3.1e-22 Score=191.33 Aligned_cols=220 Identities=15% Similarity=0.136 Sum_probs=146.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhh-cCCCeEEEEecCCCHHHHHHHh---
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEAL-RSGRAHYVSFDLRHKAQVLQAL--- 81 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~--- 81 (485)
++|++|||||+|+||+++++.|+++| ++|++++|....... ...... ...++.++.+|++|.+++.+++
T Consensus 13 ~~k~vlITGasggiG~~la~~l~~~G-~~V~~~~r~~~~~~~------~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 85 (266)
T 1xq1_A 13 KAKTVLVTGGTKGIGHAIVEEFAGFG-AVIHTCARNEYELNE------CLSKWQKKGFQVTGSVCDASLRPEREKLMQTV 85 (266)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHH------HHHHHHHTTCCEEEEECCTTSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHH------HHHHHHhcCCeeEEEECCCCCHHHHHHHHHHH
Confidence 46899999999999999999999999 699999886432110 011111 1346889999999999888877
Q ss_pred -----cCCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHH----HhcCCCEEEEecCccccccCCCCcCCC
Q 047227 82 -----QGAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDAC----AELKVKRLIYTSSPSVVFDGVHGIING 145 (485)
Q Consensus 82 -----~~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~----~~~~v~r~V~~SS~~vy~~~~~~~~~~ 145 (485)
.++|+|||+||... ..++++..+++|+.++.++++++ ++.+.+++|++||...+..
T Consensus 86 ~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~-------- 157 (266)
T 1xq1_A 86 SSMFGGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKASGCGNIIFMSSIAGVVS-------- 157 (266)
T ss_dssp HHHHTTCCSEEEEECCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCEEEEEC---------------
T ss_pred HHHhCCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEccchhccC--------
Confidence 45899999999321 23356678999999999999998 4567789999999877631
Q ss_pred CCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCCh-HHHHHHHHcCCCeEEecCCCcee
Q 047227 146 NEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLLV-PSLVAAARAGKSKFIIGDGNNVY 221 (485)
Q Consensus 146 ~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~~-~~~~~~~~~g~~~~~~g~g~~~~ 221 (485)
..+...|+.+|...|.+.+.++.+ .|++++++||+.++++...... +.+...... .....
T Consensus 158 -------~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~---------~~~~~ 221 (266)
T 1xq1_A 158 -------ASVGSIYSATKGALNQLARNLACEWASDGIRANAVAPAVIATPLAEAVYDDEFKKVVIS---------RKPLG 221 (266)
T ss_dssp ----------CCHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEECCSCC--------------------------------
T ss_pred -------CCCCchHHHHHHHHHHHHHHHHHHHhHhCcEEEEEeeCCCccchhhhhcCHHHHHHHHh---------cCCCC
Confidence 234578999999999999887654 4899999999999998643221 111111111 11223
Q ss_pred ecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCCC
Q 047227 222 DFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMES 262 (485)
Q Consensus 222 ~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~ 262 (485)
.+++++|+|++++.++... .....|+.+++.++..
T Consensus 222 ~~~~~~dva~~~~~l~~~~------~~~~~G~~~~v~gG~~ 256 (266)
T 1xq1_A 222 RFGEPEEVSSLVAFLCMPA------ASYITGQTICVDGGLT 256 (266)
T ss_dssp --CCGGGGHHHHHHHTSGG------GTTCCSCEEECCCCEE
T ss_pred CCcCHHHHHHHHHHHcCcc------ccCccCcEEEEcCCcc
Confidence 5789999999998876421 1225688999988753
|
| >1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.4e-21 Score=186.16 Aligned_cols=225 Identities=16% Similarity=0.106 Sum_probs=161.2
Q ss_pred CCCCCCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeec-CCccccCCccchhhhhhhh-cCCCeEEEEecCCCHHHHH
Q 047227 1 MSGEENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADL-SDSIALEPHEEQGILGEAL-RSGRAHYVSFDLRHKAQVL 78 (485)
Q Consensus 1 M~~~~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r-~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~ 78 (485)
|....++|+||||||+|+||+++++.|+++| ++|++++| ..... .. ...... ...++.++.+|++|++++.
T Consensus 1 m~~~l~~k~vlITGasggiG~~~a~~l~~~G-~~V~~~~r~~~~~~----~~--~~~~l~~~~~~~~~~~~D~~~~~~~~ 73 (261)
T 1gee_A 1 MYKDLEGKVVVITGSSTGLGKSMAIRFATEK-AKVVVNYRSKEDEA----NS--VLEEIKKVGGEAIAVKGDVTVESDVI 73 (261)
T ss_dssp CCGGGTTCEEEETTCSSHHHHHHHHHHHHTT-CEEEEEESSCHHHH----HH--HHHHHHHTTCEEEEEECCTTSHHHHH
T ss_pred CCCCCCCCEEEEeCCCChHHHHHHHHHHHCC-CEEEEEcCCChHHH----HH--HHHHHHhcCCceEEEECCCCCHHHHH
Confidence 5556678999999999999999999999999 68999988 42210 00 011111 1346889999999999888
Q ss_pred HHhc-------CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHHHh----cC-CCEEEEecCccccccCC
Q 047227 79 QALQ-------GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDACAE----LK-VKRLIYTSSPSVVFDGV 139 (485)
Q Consensus 79 ~~~~-------~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~~~----~~-v~r~V~~SS~~vy~~~~ 139 (485)
++++ ++|+|||+|+... ..++++..+++|+.++.++.+++.. .+ .+++|++||...+.
T Consensus 74 ~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~isS~~~~~--- 150 (261)
T 1gee_A 74 NLVQSAIKEFGKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDIKGTVINMSSVHEKI--- 150 (261)
T ss_dssp HHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECCGGGTS---
T ss_pred HHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCCCEEEEeCCHHhcC---
Confidence 8776 6999999999432 2235667899999999988877654 34 57999999976652
Q ss_pred CCcCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCCh--HHHHHHHHcCCCeEEe
Q 047227 140 HGIINGNEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLLV--PSLVAAARAGKSKFII 214 (485)
Q Consensus 140 ~~~~~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~~--~~~~~~~~~g~~~~~~ 214 (485)
+..+...|+.+|...|.+.+.++.+ .+++++++||+.++++...... +..........
T Consensus 151 ------------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~----- 213 (261)
T 1gee_A 151 ------------PWPLFVHYAASKGGMKLMTETLALEYAPKGIRVNNIGPGAINTPINAEKFADPEQRADVESMI----- 213 (261)
T ss_dssp ------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSGGGHHHHHSHHHHHHHHTTC-----
T ss_pred ------------CCCCccHHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCcCCchhhhcccChhHHHHHHhcC-----
Confidence 2345678999999999888776643 4899999999999988532111 12222222211
Q ss_pred cCCCceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCCC
Q 047227 215 GDGNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMES 262 (485)
Q Consensus 215 g~g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~ 262 (485)
....+++++|+|++++.++.... ....|+.+++.++..
T Consensus 214 ----~~~~~~~~~dva~~~~~l~~~~~------~~~~G~~~~v~gg~~ 251 (261)
T 1gee_A 214 ----PMGYIGEPEEIAAVAAWLASSEA------SYVTGITLFADGGMT 251 (261)
T ss_dssp ----TTSSCBCHHHHHHHHHHHHSGGG------TTCCSCEEEESTTGG
T ss_pred ----CCCCCcCHHHHHHHHHHHhCccc------cCCCCcEEEEcCCcc
Confidence 12357899999999998865211 225688999988753
|
| >1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.88 E-value=4.5e-22 Score=190.94 Aligned_cols=219 Identities=19% Similarity=0.156 Sum_probs=158.6
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhh--cCCCeEEEEecCCCHHHHHHHhc
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEAL--RSGRAHYVSFDLRHKAQVLQALQ 82 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~Dl~d~~~l~~~~~ 82 (485)
.++|+||||||+|+||+++++.|+++| ++|++++|...... +. ....+ ...++.++.+|++|++++.++++
T Consensus 19 ~~~k~vlItGasggiG~~la~~l~~~G-~~v~~~~r~~~~~~---~~---~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~ 91 (274)
T 1ja9_A 19 LAGKVALTTGAGRGIGRGIAIELGRRG-ASVVVNYGSSSKAA---EE---VVAELKKLGAQGVAIQADISKPSEVVALFD 91 (274)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESSCHHHH---HH---HHHHHHHTTCCEEEEECCTTSHHHHHHHHH
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCC-CEEEEEcCCchHHH---HH---HHHHHHhcCCcEEEEEecCCCHHHHHHHHH
Confidence 346899999999999999999999999 68999888322110 00 11111 13578899999999999888876
Q ss_pred -------CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHHHhc---CCCEEEEecCccccccCCCCcCCC
Q 047227 83 -------GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDACAEL---KVKRLIYTSSPSVVFDGVHGIING 145 (485)
Q Consensus 83 -------~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~~~~---~v~r~V~~SS~~vy~~~~~~~~~~ 145 (485)
++|+|||+|+... ..++++..+++|+.++.++++++.+. + +++|++||...+..
T Consensus 92 ~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~iv~~sS~~~~~~-------- 162 (274)
T 1ja9_A 92 KAVSHFGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRG-GRIILTSSIAAVMT-------- 162 (274)
T ss_dssp HHHHHHSCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEE-EEEEEECCGGGTCC--------
T ss_pred HHHHHcCCCCEEEECCCCCCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-CEEEEEcChHhccC--------
Confidence 7999999999432 22345678999999999999998775 4 69999999887621
Q ss_pred CCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCC------------CCh-HHHHHHHHcCC
Q 047227 146 NEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDR------------LLV-PSLVAAARAGK 209 (485)
Q Consensus 146 ~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~------------~~~-~~~~~~~~~g~ 209 (485)
+..+...|+.+|...|.+++.++.+ .+++++++||+.++++... ... .........
T Consensus 163 ------~~~~~~~Y~~sK~a~~~~~~~~~~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 234 (274)
T 1ja9_A 163 ------GIPNHALYAGSKAAVEGFCRAFAVDCGAKGVTVNCIAPGGVKTDMFDENSWHYAPGGYKGMPQEKIDEGLAN-- 234 (274)
T ss_dssp ------SCCSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBSSHHHHHHGGGTSTTCCTTCCHHHHHHHHHH--
T ss_pred ------CCCCCchHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcccccchhcccccccccccccCchHHHHHHHHh--
Confidence 1234568999999999999887654 4899999999999876321 011 112222222
Q ss_pred CeEEecCCCceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCC
Q 047227 210 SKFIIGDGNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNM 260 (485)
Q Consensus 210 ~~~~~g~g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~ 260 (485)
+....++++++|+|++++.++.... ....|+.|+++++
T Consensus 235 -------~~~~~~~~~~~dva~~i~~l~~~~~------~~~~G~~~~v~gG 272 (274)
T 1ja9_A 235 -------MNPLKRIGYPADIGRAVSALCQEES------EWINGQVIKLTGG 272 (274)
T ss_dssp -------TSTTSSCBCHHHHHHHHHHHHSGGG------TTCCSCEEEESTT
T ss_pred -------cCCCCCccCHHHHHHHHHHHhCccc------ccccCcEEEecCC
Confidence 2234568999999999998865211 1146889999875
|
| >2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=9.1e-22 Score=186.67 Aligned_cols=220 Identities=13% Similarity=0.066 Sum_probs=157.0
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCe-EEEEecCCCHHHHHHHh--
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRA-HYVSFDLRHKAQVLQAL-- 81 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~Dl~d~~~l~~~~-- 81 (485)
.+++++|||||+|+||+++++.|+++| ++|++++|....... ....+ ..++ .++.+|++|.+++.+++
T Consensus 9 ~~~k~vlITGasggiG~~la~~l~~~G-~~V~~~~r~~~~~~~-------~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~ 79 (254)
T 2wsb_A 9 LDGACAAVTGAGSGIGLEICRAFAASG-ARLILIDREAAALDR-------AAQEL-GAAVAARIVADVTDAEAMTAAAAE 79 (254)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHH-------HHHHH-GGGEEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHH-------HHHHh-cccceeEEEEecCCHHHHHHHHHH
Confidence 346799999999999999999999999 689999886431100 11111 2356 88999999999888876
Q ss_pred ----cCCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHH----HhcCCCEEEEecCccccccCCCCcCCCC
Q 047227 82 ----QGAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDAC----AELKVKRLIYTSSPSVVFDGVHGIINGN 146 (485)
Q Consensus 82 ----~~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~----~~~~v~r~V~~SS~~vy~~~~~~~~~~~ 146 (485)
.++|+|||+||... ..++++..+++|+.++.++.+++ ++.+.+++|++||...+...
T Consensus 80 ~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~-------- 151 (254)
T 2wsb_A 80 AEAVAPVSILVNSAGIARLHDALETDDATWRQVMAVNVDGMFWASRAFGRAMVARGAGAIVNLGSMSGTIVN-------- 151 (254)
T ss_dssp HHHHSCCCEEEECCCCCCCBCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCC--------
T ss_pred HHhhCCCcEEEECCccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEecchhccCC--------
Confidence 36899999999322 12245678899999977776654 45577899999998776311
Q ss_pred CCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCC--hHHHHHHHHcCCCeEEecCCCcee
Q 047227 147 EALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLL--VPSLVAAARAGKSKFIIGDGNNVY 221 (485)
Q Consensus 147 e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~--~~~~~~~~~~g~~~~~~g~g~~~~ 221 (485)
+..+.+.|+.+|...|.+.+.++.+ .+++++++||+.++++..... .+.+........ ...
T Consensus 152 -----~~~~~~~Y~~sK~a~~~~~~~~~~~~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~---------~~~ 217 (254)
T 2wsb_A 152 -----RPQFASSYMASKGAVHQLTRALAAEWAGRGVRVNALAPGYVATEMTLKMRERPELFETWLDMT---------PMG 217 (254)
T ss_dssp -----SSSCBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSHHHHHHHTCHHHHHHHHHTS---------TTS
T ss_pred -----CCCcchHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEEecccCchhhhccccChHHHHHHHhcC---------CCC
Confidence 1234578999999999999887654 489999999999998742210 012222222222 124
Q ss_pred ecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCC
Q 047227 222 DFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNME 261 (485)
Q Consensus 222 ~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~ 261 (485)
.+++++|+|++++.++.... ....|+.+++.++.
T Consensus 218 ~~~~~~dva~~~~~l~~~~~------~~~~G~~~~v~gG~ 251 (254)
T 2wsb_A 218 RCGEPSEIAAAALFLASPAA------SYVTGAILAVDGGY 251 (254)
T ss_dssp SCBCHHHHHHHHHHHHSGGG------TTCCSCEEEESTTG
T ss_pred CCCCHHHHHHHHHHHhCccc------ccccCCEEEECCCE
Confidence 58899999999998865211 22568899998763
|
| >2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8} | Back alignment and structure |
|---|
Probab=99.88 E-value=3.4e-22 Score=188.47 Aligned_cols=217 Identities=16% Similarity=0.103 Sum_probs=153.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEe-ecCCccccCCccchhhhhhhh--cCCCeEE-EEecCCCHHHHHHHhc
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIA-DLSDSIALEPHEEQGILGEAL--RSGRAHY-VSFDLRHKAQVLQALQ 82 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~-~r~~~~~~~~~~~~~~~~~~~--~~~~v~~-~~~Dl~d~~~l~~~~~ 82 (485)
+|++|||||+|+||+++++.|+++| ++|+++ +|....... ....+ ...++.. +.+|++|.+++.++++
T Consensus 1 ~k~vlITGasggiG~~~a~~l~~~G-~~v~~~~~r~~~~~~~-------~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 72 (245)
T 2ph3_A 1 MRKALITGASRGIGRAIALRLAEDG-FALAIHYGQNREKAEE-------VAEEARRRGSPLVAVLGANLLEAEAATALVH 72 (245)
T ss_dssp CCEEEETTTTSHHHHHHHHHHHTTT-CEEEEEESSCHHHHHH-------HHHHHHHTTCSCEEEEECCTTSHHHHHHHHH
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCC-CEEEEEcCCCHHHHHH-------HHHHHHhcCCceEEEEeccCCCHHHHHHHHH
Confidence 4789999999999999999999999 588887 665331100 11111 1245666 8999999998887764
Q ss_pred -------CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHH----HHHHHHhcCCCEEEEecCccccccCCCCcCC
Q 047227 83 -------GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKN----VIDACAELKVKRLIYTSSPSVVFDGVHGIIN 144 (485)
Q Consensus 83 -------~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~----ll~a~~~~~v~r~V~~SS~~vy~~~~~~~~~ 144 (485)
++|+|||+||... ..++++..+++|+.++.+ +++.+++.+.+++|++||...+..
T Consensus 73 ~~~~~~~~~d~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~------- 145 (245)
T 2ph3_A 73 QAAEVLGGLDTLVNNAGITRDTLLVRMKDEDWEAVLEANLSAVFRTTREAVKLMMKARFGRIVNITSVVGILG------- 145 (245)
T ss_dssp HHHHHHTCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHC-------
T ss_pred HHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCEEEEEeChhhccC-------
Confidence 6999999999432 233566789999999544 555566667889999999866531
Q ss_pred CCCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCcee
Q 047227 145 GNEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVY 221 (485)
Q Consensus 145 ~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~~ 221 (485)
..+...|+.+|...|.+.+.++.+ .+++++++||+.++++......+.+......+.+ ..
T Consensus 146 --------~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~---------~~ 208 (245)
T 2ph3_A 146 --------NPGQANYVASKAGLIGFTRAVAKEYAQRGITVNAVAPGFIETEMTERLPQEVKEAYLKQIP---------AG 208 (245)
T ss_dssp --------CSSBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHTSCHHHHHHHHHTCT---------TC
T ss_pred --------CCCCcchHHHHHHHHHHHHHHHHHHHHcCeEEEEEEEEeecCcchhhcCHHHHHHHHhcCC---------CC
Confidence 134578999999999988877644 4899999999999987432222333333332221 24
Q ss_pred ecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCC
Q 047227 222 DFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNME 261 (485)
Q Consensus 222 ~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~ 261 (485)
.+++++|+|++++.++... .....|+.|++.++.
T Consensus 209 ~~~~~~dva~~~~~l~~~~------~~~~~G~~~~v~gg~ 242 (245)
T 2ph3_A 209 RFGRPEEVAEAVAFLVSEK------AGYITGQTLCVDGGL 242 (245)
T ss_dssp SCBCHHHHHHHHHHHTSGG------GTTCCSCEEEESTTC
T ss_pred CCcCHHHHHHHHHHHhCcc------cccccCCEEEECCCC
Confidence 5889999999999886521 112468999998763
|
| >3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.88 E-value=7.4e-22 Score=188.51 Aligned_cols=228 Identities=15% Similarity=0.130 Sum_probs=162.9
Q ss_pred CCCCCCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhh--cCCCeEEEEecCCCHHHHH
Q 047227 1 MSGEENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEAL--RSGRAHYVSFDLRHKAQVL 78 (485)
Q Consensus 1 M~~~~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~Dl~d~~~l~ 78 (485)
|+-...++++|||||+|+||+++++.|+++| ++|.++++........ ..... ...++.++.+|++|++++.
T Consensus 1 M~~~~~~k~vlVTGas~gIG~~~a~~l~~~G-~~v~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~Dl~~~~~v~ 73 (264)
T 3i4f_A 1 MSLGRFVRHALITAGTKGLGKQVTEKLLAKG-YSVTVTYHSDTTAMET------MKETYKDVEERLQFVQADVTKKEDLH 73 (264)
T ss_dssp -----CCCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESSCHHHHHH------HHHHTGGGGGGEEEEECCTTSHHHHH
T ss_pred CCcccccCEEEEeCCCchhHHHHHHHHHHCC-CEEEEEcCCChHHHHH------HHHHHHhcCCceEEEEecCCCHHHHH
Confidence 5544557899999999999999999999999 6888887664321110 11111 1357899999999999988
Q ss_pred HHhc-------CCCEEEEcCCC--CC-------CCCchhhhHHHHHHHHHHHHHHH----HhcCCCEEEEecCccccccC
Q 047227 79 QALQ-------GAEVVFHMAAP--NS-------SINNHKLHHSVNVEGTKNVIDAC----AELKVKRLIYTSSPSVVFDG 138 (485)
Q Consensus 79 ~~~~-------~~d~Vih~aa~--~~-------~~~~~~~~~~~nv~~t~~ll~a~----~~~~v~r~V~~SS~~vy~~~ 138 (485)
++++ ++|+|||+||. .. ..++++..+++|+.++.++.+++ ++.+..++|++||.+.+...
T Consensus 74 ~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~iss~~~~~~~ 153 (264)
T 3i4f_A 74 KIVEEAMSHFGKIDFLINNAGPYVFERKKLVDYEEDEWNEMIQGNLTAVFHLLKLVVPVMRKQNFGRIINYGFQGADSAP 153 (264)
T ss_dssp HHHHHHHHHHSCCCEEECCCCCCCCSCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTTGGGCC
T ss_pred HHHHHHHHHhCCCCEEEECCcccccCCCccccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCeEEEEeechhcccC
Confidence 8875 68999999993 11 22345778999999999999998 66677899999997554210
Q ss_pred CCCcCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEec
Q 047227 139 VHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIG 215 (485)
Q Consensus 139 ~~~~~~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g 215 (485)
+..+...|+.+|+..+.+.+.++.+ .|+++.+++||.++++......+.........
T Consensus 154 -------------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~------- 213 (264)
T 3i4f_A 154 -------------GWIYRSAFAAAKVGLVSLTKTVAYEEAEYGITANMVCPGDIIGEMKEATIQEARQLKEHN------- 213 (264)
T ss_dssp -------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCGGGGSCCHHHHHHC-----------
T ss_pred -------------CCCCCchhHHHHHHHHHHHHHHHHHhhhcCcEEEEEccCCccCccchhccHHHHHHHhhc-------
Confidence 2345678999999999998877654 68999999999999987655554433222211
Q ss_pred CCCceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCCCc
Q 047227 216 DGNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMESI 263 (485)
Q Consensus 216 ~g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~~ 263 (485)
.....+.+++|+|++++.++.... ....|+.+++.+|...
T Consensus 214 --~p~~r~~~~~dva~~v~~l~s~~~------~~itG~~i~vdGG~~~ 253 (264)
T 3i4f_A 214 --TPIGRSGTGEDIARTISFLCEDDS------DMITGTIIEVTGAVDV 253 (264)
T ss_dssp ------CCCCHHHHHHHHHHHHSGGG------TTCCSCEEEESCSCCC
T ss_pred --CCCCCCcCHHHHHHHHHHHcCccc------CCCCCcEEEEcCceee
Confidence 223457889999999998865322 2267999999887543
|
| >1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A | Back alignment and structure |
|---|
Probab=99.87 E-value=1.7e-21 Score=184.42 Aligned_cols=223 Identities=12% Similarity=0.059 Sum_probs=157.7
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc-
Q 047227 4 EENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ- 82 (485)
Q Consensus 4 ~~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~- 82 (485)
..++|++|||||+|+||+++++.|+++| ++|++++|....... .........++.++.+|++|++++.++++
T Consensus 3 ~~~~k~vlVtGasggiG~~~a~~l~~~G-~~V~~~~r~~~~~~~------~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 75 (251)
T 1zk4_A 3 RLDGKVAIITGGTLGIGLAIATKFVEEG-AKVMITGRHSDVGEK------AAKSVGTPDQIQFFQHDSSDEDGWTKLFDA 75 (251)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHH------HHHHHCCTTTEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCcEEEEeCCCChHHHHHHHHHHHCC-CEEEEEeCCHHHHHH------HHHHhhccCceEEEECCCCCHHHHHHHHHH
Confidence 4567899999999999999999999999 689999886431100 01111112578999999999998888775
Q ss_pred ------CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHH----HHhcCC-CEEEEecCccccccCCCCcCC
Q 047227 83 ------GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDA----CAELKV-KRLIYTSSPSVVFDGVHGIIN 144 (485)
Q Consensus 83 ------~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a----~~~~~v-~r~V~~SS~~vy~~~~~~~~~ 144 (485)
++|+|||+|+... ..++++..+++|+.++.++.++ +++.+. +++|++||...+..
T Consensus 76 ~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~------- 148 (251)
T 1zk4_A 76 TEKAFGPVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNKGLGASIINMSSIEGFVG------- 148 (251)
T ss_dssp HHHHHSSCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEEECCGGGTSC-------
T ss_pred HHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCCEEEEeCCchhccC-------
Confidence 4899999999321 2234567899999987766555 455566 79999999877631
Q ss_pred CCCCCCCCCCCCchHHHHHHHHHHHHHHHhC-----CCCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCc
Q 047227 145 GNEALPYPPKHNDFYSATKAEGEALVIKANG-----TNGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNN 219 (485)
Q Consensus 145 ~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~-----~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~ 219 (485)
..+...|+.+|...|.+.+.++. ..+++++++||+.++++............ ... ....
T Consensus 149 --------~~~~~~Y~~sK~a~~~~~~~~a~e~~~~~~~i~v~~v~Pg~v~t~~~~~~~~~~~~~-~~~-------~~~~ 212 (251)
T 1zk4_A 149 --------DPSLGAYNASKGAVRIMSKSAALDCALKDYDVRVNTVHPGYIKTPLVDDLPGAEEAM-SQR-------TKTP 212 (251)
T ss_dssp --------CTTCHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEEECCBCCHHHHTSTTHHHHH-TST-------TTCT
T ss_pred --------CCCCccchHHHHHHHHHHHHHHHHhcccCCCeEEEEEeeCcCcchhhhhcCchhhhH-HHh-------hcCC
Confidence 23567899999999999887653 56899999999999987422111111100 001 1112
Q ss_pred eeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCCC
Q 047227 220 VYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMES 262 (485)
Q Consensus 220 ~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~ 262 (485)
...+++++|+|++++.++.... ....|+.+++.++..
T Consensus 213 ~~~~~~~~dva~~~~~l~~~~~------~~~~G~~~~v~gG~~ 249 (251)
T 1zk4_A 213 MGHIGEPNDIAYICVYLASNES------KFATGSEFVVDGGYT 249 (251)
T ss_dssp TSSCBCHHHHHHHHHHHHSGGG------TTCCSCEEEESTTGG
T ss_pred CCCCcCHHHHHHHHHHHcCccc------ccccCcEEEECCCcc
Confidence 3458899999999998865211 125689999988743
|
| >3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.87 E-value=2.3e-21 Score=183.47 Aligned_cols=219 Identities=15% Similarity=0.088 Sum_probs=158.4
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc--
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ-- 82 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 82 (485)
.++++||||||+|+||+++++.|+++| ++|.+.+|....... ....+ ..++.++.+|++|.+++.++++
T Consensus 12 ~~~k~vlVTGas~gIG~~~a~~l~~~G-~~V~~~~r~~~~~~~-------~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~ 82 (249)
T 3f9i_A 12 LTGKTSLITGASSGIGSAIARLLHKLG-SKVIISGSNEEKLKS-------LGNAL-KDNYTIEVCNLANKEECSNLISKT 82 (249)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHH-------HHHHH-CSSEEEEECCTTSHHHHHHHHHTC
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCC-CEEEEEcCCHHHHHH-------HHHHh-ccCccEEEcCCCCHHHHHHHHHhc
Confidence 457899999999999999999999999 689999886431110 11111 3578899999999999998886
Q ss_pred -CCCEEEEcCCCC-------CCCCchhhhHHHHHHHHHHHHHHHH----hcCCCEEEEecCccccccCCCCcCCCCCCCC
Q 047227 83 -GAEVVFHMAAPN-------SSINNHKLHHSVNVEGTKNVIDACA----ELKVKRLIYTSSPSVVFDGVHGIINGNEALP 150 (485)
Q Consensus 83 -~~d~Vih~aa~~-------~~~~~~~~~~~~nv~~t~~ll~a~~----~~~v~r~V~~SS~~vy~~~~~~~~~~~e~~~ 150 (485)
+.|+|||+||.. ...++++..+++|+.++.++.+++. +.+..++|++||...+.
T Consensus 83 ~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~-------------- 148 (249)
T 3f9i_A 83 SNLDILVCNAGITSDTLAIRMKDQDFDKVIDINLKANFILNREAIKKMIQKRYGRIINISSIVGIA-------------- 148 (249)
T ss_dssp SCCSEEEECCC-------------CHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCCCC----------------
T ss_pred CCCCEEEECCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEccHHhcc--------------
Confidence 589999999932 2445778899999999999988774 34567999999987763
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCceeecccHH
Q 047227 151 YPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVA 227 (485)
Q Consensus 151 ~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~ 227 (485)
+..+...|+.+|+..|.+.+.++.+ .|+++.+++||.+.++...............+. ....+.+++
T Consensus 149 -~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~---------~~~~~~~~~ 218 (249)
T 3f9i_A 149 -GNPGQANYCASKAGLIGMTKSLSYEVATRGITVNAVAPGFIKSDMTDKLNEKQREAIVQKI---------PLGTYGIPE 218 (249)
T ss_dssp -CCSCSHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBC------CCHHHHHHHHHHC---------TTCSCBCHH
T ss_pred -CCCCCchhHHHHHHHHHHHHHHHHHHHHcCcEEEEEecCccccCcccccCHHHHHHHHhcC---------CCCCCcCHH
Confidence 1245678999999999988877643 589999999999998765444344333333222 234688899
Q ss_pred HHHHHHHHHHHHhccccchhhccCCcEEEeeCCCC
Q 047227 228 NVAHAHICAERALASEVTVAEKAAGQAYFVTNMES 262 (485)
Q Consensus 228 D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~ 262 (485)
|+|++++.++.... ....|+.+++.++..
T Consensus 219 dva~~~~~l~s~~~------~~~tG~~~~vdgG~~ 247 (249)
T 3f9i_A 219 DVAYAVAFLASNNA------SYITGQTLHVNGGML 247 (249)
T ss_dssp HHHHHHHHHHSGGG------TTCCSCEEEESTTSS
T ss_pred HHHHHHHHHcCCcc------CCccCcEEEECCCEe
Confidence 99999998865322 225799999988753
|
| >1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G | Back alignment and structure |
|---|
Probab=99.87 E-value=1.8e-21 Score=183.43 Aligned_cols=219 Identities=18% Similarity=0.082 Sum_probs=157.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEe-ecCCccccCCccchhhhhhh-hcCCCeEEEEecCCCHHHHHHHhc--
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIA-DLSDSIALEPHEEQGILGEA-LRSGRAHYVSFDLRHKAQVLQALQ-- 82 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~-~r~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~l~~~~~-- 82 (485)
+|++|||||+|+||+++++.|+++| ++|+++ +|....... ..... ....++.++.+|++|++++.++++
T Consensus 1 ~k~vlVTGasggiG~~la~~l~~~G-~~v~~~~~r~~~~~~~------~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 73 (244)
T 1edo_A 1 SPVVVVTGASRGIGKAIALSLGKAG-CKVLVNYARSAKAAEE------VSKQIEAYGGQAITFGGDVSKEADVEAMMKTA 73 (244)
T ss_dssp CCEEEETTCSSHHHHHHHHHHHHTT-CEEEEEESSCHHHHHH------HHHHHHHHTCEEEEEECCTTSHHHHHHHHHHH
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCC-CEEEEEcCCCHHHHHH------HHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHH
Confidence 4789999999999999999999999 588874 565321100 01111 013568899999999999888876
Q ss_pred -----CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHHHh----cCCCEEEEecCccccccCCCCcCCCC
Q 047227 83 -----GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDACAE----LKVKRLIYTSSPSVVFDGVHGIINGN 146 (485)
Q Consensus 83 -----~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~~~----~~v~r~V~~SS~~vy~~~~~~~~~~~ 146 (485)
++|+|||+||... ..++++..+++|+.++.++++++.+ .+.+++|++||...+..
T Consensus 74 ~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~--------- 144 (244)
T 1edo_A 74 IDAWGTIDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKRKGRIINIASVVGLIG--------- 144 (244)
T ss_dssp HHHSSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHC---------
T ss_pred HHHcCCCCEEEECCCCCCCcCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCEEEEECChhhcCC---------
Confidence 6899999999432 2235667899999999999888876 36779999999876531
Q ss_pred CCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCceeec
Q 047227 147 EALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDF 223 (485)
Q Consensus 147 e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~ 223 (485)
..+...|+.+|...|.+.+.++.+ .+++++++||+.++++......+.+........ ....+
T Consensus 145 ------~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~---------~~~~~ 209 (244)
T 1edo_A 145 ------NIGQANYAAAKAGVIGFSKTAAREGASRNINVNVVCPGFIASDMTAKLGEDMEKKILGTI---------PLGRT 209 (244)
T ss_dssp ------CTTCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCSHHHHTTCHHHHHHHHTSC---------TTCSC
T ss_pred ------CCCCccchhhHHHHHHHHHHHHHHhhhcCCEEEEEeeCccccchhhhcChHHHHHHhhcC---------CCCCC
Confidence 234578999999999988876643 589999999999998743222233333332221 12358
Q ss_pred ccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCC
Q 047227 224 TYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNME 261 (485)
Q Consensus 224 i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~ 261 (485)
++++|+|++++.++.... .....|+.|++.++.
T Consensus 210 ~~~~dva~~~~~l~~~~~-----~~~~~G~~~~v~gG~ 242 (244)
T 1edo_A 210 GQPENVAGLVEFLALSPA-----ASYITGQAFTIDGGI 242 (244)
T ss_dssp BCHHHHHHHHHHHHHCSG-----GGGCCSCEEEESTTT
T ss_pred CCHHHHHHHHHHHhCCCc-----cCCcCCCEEEeCCCc
Confidence 899999999998864211 122568999998764
|
| >2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.87 E-value=6e-21 Score=180.76 Aligned_cols=219 Identities=17% Similarity=0.084 Sum_probs=150.0
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc--
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ-- 82 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 82 (485)
.++|++|||||+|+||+++++.|+++| ++|++++|.... . ..++..+.+|++|++++.++++
T Consensus 5 l~~k~vlVTGas~giG~~ia~~l~~~G-~~V~~~~r~~~~-----~----------~~~~~~~~~D~~d~~~~~~~~~~~ 68 (250)
T 2fwm_X 5 FSGKNVWVTGAGKGIGYATALAFVEAG-AKVTGFDQAFTQ-----E----------QYPFATEVMDVADAAQVAQVCQRL 68 (250)
T ss_dssp CTTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESCCCS-----S----------CCSSEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCchhh-----h----------cCCceEEEcCCCCHHHHHHHHHHH
Confidence 456899999999999999999999999 699999887531 0 1137889999999999888875
Q ss_pred -----CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHH----HhcCCCEEEEecCccccccCCCCcCCCC
Q 047227 83 -----GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDAC----AELKVKRLIYTSSPSVVFDGVHGIINGN 146 (485)
Q Consensus 83 -----~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~----~~~~v~r~V~~SS~~vy~~~~~~~~~~~ 146 (485)
++|+|||+||... ..++++..+++|+.++.++.+++ ++.+.+++|++||...+.
T Consensus 69 ~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~---------- 138 (250)
T 2fwm_X 69 LAETERLDALVNAAGILRMGATDQLSKEDWQQTFAVNVGGAFNLFQQTMNQFRRQRGGAIVTVASDAAHT---------- 138 (250)
T ss_dssp HHHCSCCCEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTS----------
T ss_pred HHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhcCCCEEEEECchhhCC----------
Confidence 6899999999322 23456788999999999999888 455678999999987752
Q ss_pred CCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCCh-H-HHHH-HHHcCCCeEEecCCCce
Q 047227 147 EALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLLV-P-SLVA-AARAGKSKFIIGDGNNV 220 (485)
Q Consensus 147 e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~~-~-~~~~-~~~~g~~~~~~g~g~~~ 220 (485)
+..+...|+.+|...|.+.+.++.+ .|++++++||+.++++...... . .... ....... ........
T Consensus 139 -----~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~--~~~~~~p~ 211 (250)
T 2fwm_X 139 -----PRIGMSAYGASKAALKSLALSVGLELAGSGVRCNVVSPGSTDTDMQRTLWVSDDAEEQRIRGFGE--QFKLGIPL 211 (250)
T ss_dssp -----CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCC----------------------------------
T ss_pred -----CCCCCchHHHHHHHHHHHHHHHHHHhCccCCEEEEEECCcccCccccccccChhHHHHHHhhhhh--cccccCCC
Confidence 1245678999999999999887644 5899999999999987532211 0 0000 0000000 00001122
Q ss_pred eecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCCC
Q 047227 221 YDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMES 262 (485)
Q Consensus 221 ~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~ 262 (485)
..+.+++|+|++++.++.... ....|+.+++.++..
T Consensus 212 ~~~~~p~dvA~~v~~l~s~~~------~~~tG~~i~vdGG~~ 247 (250)
T 2fwm_X 212 GKIARPQEIANTILFLASDLA------SHITLQDIVVDGGST 247 (250)
T ss_dssp ----CHHHHHHHHHHHHSGGG------TTCCSCEEEESTTTT
T ss_pred CCCcCHHHHHHHHHHHhCccc------cCCCCCEEEECCCcc
Confidence 347899999999998865221 226789999987753
|
| >3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.87 E-value=2.5e-21 Score=184.66 Aligned_cols=224 Identities=22% Similarity=0.164 Sum_probs=164.5
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhh--cCCCeEEEEecCCCHHHHHHHh
Q 047227 4 EENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEAL--RSGRAHYVSFDLRHKAQVLQAL 81 (485)
Q Consensus 4 ~~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~Dl~d~~~l~~~~ 81 (485)
..++|++|||||+|+||+++++.|.++| ++|.+++|....... ...... ...++.++.+|++|++++.+++
T Consensus 7 ~l~~k~vlVTGas~gIG~aia~~l~~~G-~~V~~~~r~~~~~~~------~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~~ 79 (262)
T 3pk0_A 7 DLQGRSVVVTGGTKGIGRGIATVFARAG-ANVAVAGRSTADIDA------CVADLDQLGSGKVIGVQTDVSDRAQCDALA 79 (262)
T ss_dssp CCTTCEEEETTCSSHHHHHHHHHHHHTT-CEEEEEESCHHHHHH------HHHHHHTTSSSCEEEEECCTTSHHHHHHHH
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHH------HHHHHHhhCCCcEEEEEcCCCCHHHHHHHH
Confidence 3457899999999999999999999999 699999887542111 011111 1257899999999999888877
Q ss_pred c-------CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHHHhc----CCCEEEEecCccccccCCCCcC
Q 047227 82 Q-------GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDACAEL----KVKRLIYTSSPSVVFDGVHGII 143 (485)
Q Consensus 82 ~-------~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~~~~----~v~r~V~~SS~~vy~~~~~~~~ 143 (485)
+ ++|++||+||... +.++++..+++|+.++.++.+++... +..++|++||......
T Consensus 80 ~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~------ 153 (262)
T 3pk0_A 80 GRAVEEFGGIDVVCANAGVFPDAPLATMTPEQLNGIFAVNVNGTFYAVQACLDALIASGSGRVVLTSSITGPIT------ 153 (262)
T ss_dssp HHHHHHHSCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHSSCEEEEECCSBTTTB------
T ss_pred HHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEechhhccC------
Confidence 5 6999999999321 23456678999999999998887765 6789999999765310
Q ss_pred CCCCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCce
Q 047227 144 NGNEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNV 220 (485)
Q Consensus 144 ~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~ 220 (485)
+..+...|+.+|...+.+.+.++.+ +|+++.+++||.++++......+.+........+ .
T Consensus 154 --------~~~~~~~Y~asK~a~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~p---------~ 216 (262)
T 3pk0_A 154 --------GYPGWSHYGATKAAQLGFMRTAAIELAPHKITVNAIMPGNIMTEGLLENGEEYIASMARSIP---------A 216 (262)
T ss_dssp --------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCHHHHTTCHHHHHHHHTTST---------T
T ss_pred --------CCCCChhhHHHHHHHHHHHHHHHHHHHhhCcEEEEEEeCcCcCccccccCHHHHHHHHhcCC---------C
Confidence 1245678999999999999887755 6899999999999987432222334444433322 2
Q ss_pred eecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCCCc
Q 047227 221 YDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMESI 263 (485)
Q Consensus 221 ~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~~ 263 (485)
..+..++|+|++++.++.... .-..|+.+++.++..+
T Consensus 217 ~r~~~p~dva~~v~~L~s~~~------~~itG~~i~vdGG~~~ 253 (262)
T 3pk0_A 217 GALGTPEDIGHLAAFLATKEA------GYITGQAIAVDGGQVL 253 (262)
T ss_dssp SSCBCHHHHHHHHHHHHSGGG------TTCCSCEEEESTTTTC
T ss_pred CCCcCHHHHHHHHHHHhCccc------cCCcCCEEEECCCeec
Confidence 346789999999998865221 2267999999887543
|
| >3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.87 E-value=1.1e-21 Score=189.07 Aligned_cols=239 Identities=14% Similarity=0.091 Sum_probs=165.0
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCC-----ccchhhhhhh--hcCCCeEEEEecCCCHHH
Q 047227 4 EENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEP-----HEEQGILGEA--LRSGRAHYVSFDLRHKAQ 76 (485)
Q Consensus 4 ~~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~-----~~~~~~~~~~--~~~~~v~~~~~Dl~d~~~ 76 (485)
..++|++|||||+|+||+++++.|+++| ++|.+++|........ .+........ ....++.++.+|++|+++
T Consensus 7 ~l~~k~~lVTGas~gIG~a~a~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~ 85 (281)
T 3s55_A 7 DFEGKTALITGGARGMGRSHAVALAEAG-ADIAICDRCENSDVVGYPLATADDLAETVALVEKTGRRCISAKVDVKDRAA 85 (281)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHH
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCC-CeEEEEeCCccccccccccccHHHHHHHHHHHHhcCCeEEEEeCCCCCHHH
Confidence 3457899999999999999999999999 6899999864321100 0110001111 124578999999999998
Q ss_pred HHHHhc-------CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHH----HhcCCCEEEEecCccccccC
Q 047227 77 VLQALQ-------GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDAC----AELKVKRLIYTSSPSVVFDG 138 (485)
Q Consensus 77 l~~~~~-------~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~----~~~~v~r~V~~SS~~vy~~~ 138 (485)
+.++++ +.|++||+||... +.++++..+++|+.++.++.+++ ++.+..++|++||...+.
T Consensus 86 v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~-- 163 (281)
T 3s55_A 86 LESFVAEAEDTLGGIDIAITNAGISTIALLPEVESAQWDEVIGTNLTGTFNTIAAVAPGMIKRNYGRIVTVSSMLGHS-- 163 (281)
T ss_dssp HHHHHHHHHHHHTCCCEEEECCCCCCCCCTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGGS--
T ss_pred HHHHHHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECChhhcC--
Confidence 888775 6999999999322 33456778999999999999985 345567999999987763
Q ss_pred CCCcCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCChH--HHHHHHHcCC----
Q 047227 139 VHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLLVP--SLVAAARAGK---- 209 (485)
Q Consensus 139 ~~~~~~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~~~--~~~~~~~~g~---- 209 (485)
+..+...|+.+|...+.+.+.++.+ +|+++.+++||.+++|....... .+........
T Consensus 164 -------------~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~ 230 (281)
T 3s55_A 164 -------------ANFAQASYVSSKWGVIGLTKCAAHDLVGYGITVNAVAPGNIETPMTHNDFVFGTMRPDLEKPTLKDV 230 (281)
T ss_dssp -------------CCTTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCSTTTSSHHHHHC-------CCHHHH
T ss_pred -------------CCCCCchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCcccCccccchhhhccccccccccchhHH
Confidence 2345678999999999999887764 58999999999999986542110 0000000000
Q ss_pred CeEEecCCCceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCCCcc
Q 047227 210 SKFIIGDGNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMESIK 264 (485)
Q Consensus 210 ~~~~~g~g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~~t 264 (485)
.............+.+++|+|++++.++..... ...|+.+++.++...+
T Consensus 231 ~~~~~~~~~~~~~~~~p~dvA~~v~~L~s~~~~------~itG~~i~vdgG~~~~ 279 (281)
T 3s55_A 231 ESVFASLHLQYAPFLKPEEVTRAVLFLVDEASS------HITGTVLPIDAGATAR 279 (281)
T ss_dssp HHHHHHHCSSSCSCBCHHHHHHHHHHHHSGGGT------TCCSCEEEESTTGGGG
T ss_pred HHHHHhhhccCcCCCCHHHHHHHHHHHcCCccc------CCCCCEEEECCCcccC
Confidence 000001112236789999999999988653222 2679999999876543
|
| >2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.3e-21 Score=186.49 Aligned_cols=236 Identities=13% Similarity=0.064 Sum_probs=158.3
Q ss_pred CCCCCCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHH
Q 047227 1 MSGEENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQA 80 (485)
Q Consensus 1 M~~~~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~ 80 (485)
|+-..++|++|||||+|+||+++++.|+++| ++|++++|..........+ +.......++.++.+|++|++++.++
T Consensus 1 m~~~l~~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~---~~~~~~~~~~~~~~~D~~~~~~v~~~ 76 (260)
T 2z1n_A 1 MDLGIQGKLAVVTAGSSGLGFASALELARNG-ARLLLFSRNREKLEAAASR---IASLVSGAQVDIVAGDIREPGDIDRL 76 (260)
T ss_dssp CCCCCTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHH---HHHHSTTCCEEEEECCTTCHHHHHHH
T ss_pred CCCCCCCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHH---HHhcCCCCeEEEEEccCCCHHHHHHH
Confidence 4434567899999999999999999999999 6899998864321100000 11000022789999999999999888
Q ss_pred hc------CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHH----HhcCCCEEEEecCccccccCCCCcC
Q 047227 81 LQ------GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDAC----AELKVKRLIYTSSPSVVFDGVHGII 143 (485)
Q Consensus 81 ~~------~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~----~~~~v~r~V~~SS~~vy~~~~~~~~ 143 (485)
++ ++|+|||+||... ..++++..+++|+.++.++.+++ ++.+.+++|++||...+.
T Consensus 77 ~~~~~~~~gid~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~------- 149 (260)
T 2z1n_A 77 FEKARDLGGADILVYSTGGPRPGRFMELGVEDWDESYRLLARSAVWVGRRAAEQMVEKGWGRMVYIGSVTLLR------- 149 (260)
T ss_dssp HHHHHHTTCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS-------
T ss_pred HHHHHHhcCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECchhhcC-------
Confidence 86 6999999999322 23356778999999996665554 455778999999988763
Q ss_pred CCCCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCChHHHHH--HHHcCCCeEEecCCC
Q 047227 144 NGNEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLLVPSLVA--AARAGKSKFIIGDGN 218 (485)
Q Consensus 144 ~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~~~~~~~--~~~~g~~~~~~g~g~ 218 (485)
+..+...|+.+|...+.+.+.++.+ .|++++++|||.++++........... ...............
T Consensus 150 --------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (260)
T 2z1n_A 150 --------PWQDLALSNIMRLPVIGVVRTLALELAPHGVTVNAVLPSLILTDRVRSLAEERARRSGITVEEALKSMASRI 221 (260)
T ss_dssp --------CCTTBHHHHHHTHHHHHHHHHHHHHHGGGTEEEEEEEECHHHHCCCC-----------------------CC
T ss_pred --------CCCCCchhHHHHHHHHHHHHHHHHHHhhhCeEEEEEEECCcccchhhhhhhhhhcccCCcHHHHHHHHHhcC
Confidence 1235678999999999998877644 489999999999998864311100000 000000000011111
Q ss_pred ceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCC
Q 047227 219 NVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNME 261 (485)
Q Consensus 219 ~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~ 261 (485)
....+.+++|+|++++.++.... ....|+.+++.++.
T Consensus 222 p~~r~~~~~dva~~v~~l~s~~~------~~~tG~~i~vdGG~ 258 (260)
T 2z1n_A 222 PMGRVGKPEELASVVAFLASEKA------SFITGAVIPVDGGA 258 (260)
T ss_dssp TTSSCCCHHHHHHHHHHHTSGGG------TTCCSCEEEESTTT
T ss_pred CCCCccCHHHHHHHHHHHhCccc------cCCCCCEEEeCCCc
Confidence 23457899999999998864211 22678999998763
|
| >2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=3.8e-22 Score=190.19 Aligned_cols=226 Identities=15% Similarity=0.082 Sum_probs=160.6
Q ss_pred CCCC--CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhh-cCCCeEEEEecCCCHHHH
Q 047227 1 MSGE--ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEAL-RSGRAHYVSFDLRHKAQV 77 (485)
Q Consensus 1 M~~~--~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l 77 (485)
|+.. .++|++|||||+|+||+++++.|+++| ++|++++|....... ...... ...++.++.+|++|++++
T Consensus 1 m~~~~~l~~k~vlVTGas~giG~~ia~~l~~~G-~~V~~~~r~~~~~~~------~~~~~~~~~~~~~~~~~D~~~~~~~ 73 (260)
T 2ae2_A 1 MAGRWNLEGCTALVTGGSRGIGYGIVEELASLG-ASVYTCSRNQKELND------CLTQWRSKGFKVEASVCDLSSRSER 73 (260)
T ss_dssp -CCTTCCTTCEEEEESCSSHHHHHHHHHHHHTT-CEEEEEESCHHHHHH------HHHHHHHTTCEEEEEECCTTCHHHH
T ss_pred CCCccCCCCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHH------HHHHHHhcCCcEEEEEcCCCCHHHH
Confidence 5543 456899999999999999999999999 699999886532110 011111 134688999999999988
Q ss_pred HHHh--------cCCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHHH----hcCCCEEEEecCccccccC
Q 047227 78 LQAL--------QGAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDACA----ELKVKRLIYTSSPSVVFDG 138 (485)
Q Consensus 78 ~~~~--------~~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~~----~~~v~r~V~~SS~~vy~~~ 138 (485)
.+++ .++|+|||+||... ..++++..+++|+.++.++.+++. +.+.+++|++||...+.
T Consensus 74 ~~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~-- 151 (260)
T 2ae2_A 74 QELMNTVANHFHGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKASERGNVVFISSVSGAL-- 151 (260)
T ss_dssp HHHHHHHHHHTTTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTSSEEEEEECCGGGTS--
T ss_pred HHHHHHHHHHcCCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhcc--
Confidence 8877 35999999999432 233567789999999999998884 45678999999987653
Q ss_pred CCCcCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCC--hHHHHH---HHHcCCC
Q 047227 139 VHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLL--VPSLVA---AARAGKS 210 (485)
Q Consensus 139 ~~~~~~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~--~~~~~~---~~~~g~~ 210 (485)
+..+...|+.+|...|.+.+.++.+ .|+++++++||.+.++..... -+.... .....
T Consensus 152 -------------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~-- 216 (260)
T 2ae2_A 152 -------------AVPYEAVYGATKGAMDQLTRCLAFEWAKDNIRVNGVGPGVIATSLVEMTIQDPEQKENLNKLIDR-- 216 (260)
T ss_dssp -------------CCTTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCSHHHHHHTTSHHHHHHHHHHHHT--
T ss_pred -------------CCCCcchHHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCCCCCcchhhhccChhhHHHHHHHHhc--
Confidence 1234578999999999999887654 489999999999987631100 011111 11111
Q ss_pred eEEecCCCceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCCCc
Q 047227 211 KFIIGDGNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMESI 263 (485)
Q Consensus 211 ~~~~g~g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~~ 263 (485)
.....+.+++|+|++++.++.... ....|+.+++.++..+
T Consensus 217 -------~~~~~~~~~~dvA~~v~~l~s~~~------~~~tG~~~~vdgG~~~ 256 (260)
T 2ae2_A 217 -------CALRRMGEPKELAAMVAFLCFPAA------SYVTGQIIYVDGGLMA 256 (260)
T ss_dssp -------STTCSCBCHHHHHHHHHHHHSGGG------TTCCSCEEEESTTGGG
T ss_pred -------CCCCCCCCHHHHHHHHHHHcCccc------cCCCCCEEEECCCccc
Confidence 123458899999999988764211 2257899999887543
|
| >3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.9e-21 Score=184.35 Aligned_cols=219 Identities=18% Similarity=0.132 Sum_probs=158.6
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc--
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ-- 82 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 82 (485)
.++|++|||||+|+||+++++.|+++| ++|++++|...... . ....+ ..++.++.+|++|++++.++++
T Consensus 10 l~~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~----~---~~~~~-~~~~~~~~~D~~d~~~v~~~~~~~ 80 (263)
T 3ak4_A 10 LSGRKAIVTGGSKGIGAAIARALDKAG-ATVAIADLDVMAAQ----A---VVAGL-ENGGFAVEVDVTKRASVDAAMQKA 80 (263)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHH----H---HHHTC-TTCCEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCC-CEEEEEeCCHHHHH----H---HHHHH-hcCCeEEEEeCCCHHHHHHHHHHH
Confidence 356899999999999999999999999 69999988643110 0 11111 1268889999999999888876
Q ss_pred -----CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHHHhc----C-CCEEEEecCccccccCCCCcCCC
Q 047227 83 -----GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDACAEL----K-VKRLIYTSSPSVVFDGVHGIING 145 (485)
Q Consensus 83 -----~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~~~~----~-v~r~V~~SS~~vy~~~~~~~~~~ 145 (485)
++|+|||+||... ..++++..+++|+.++.++.+++... + .+++|++||...+.
T Consensus 81 ~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~--------- 151 (263)
T 3ak4_A 81 IDALGGFDLLCANAGVSTMRPAVDITDEEWDFNFDVNARGVFLANQIACRHFLASNTKGVIVNTASLAAKV--------- 151 (263)
T ss_dssp HHHHTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECCGGGTS---------
T ss_pred HHHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEEeccccccc---------
Confidence 7999999999432 22356778999999999998887643 4 57999999987652
Q ss_pred CCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCCh-----------HHHHHHHHcCCCe
Q 047227 146 NEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLLV-----------PSLVAAARAGKSK 211 (485)
Q Consensus 146 ~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~~-----------~~~~~~~~~g~~~ 211 (485)
+..+...|+.+|...|.+.+.++.+ .|++++++||+.++++...... +.........
T Consensus 152 ------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 222 (263)
T 3ak4_A 152 ------GAPLLAHYSASKFAVFGWTQALAREMAPKNIRVNCVCPGFVKTAMQEREIIWEAELRGMTPEAVRAEYVSL--- 222 (263)
T ss_dssp ------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBTTHHHHHHHHHHHHHHTSCHHHHHHHHHHT---
T ss_pred ------CCCCchhHHHHHHHHHHHHHHHHHHHhHcCeEEEEEecccccChhhhhhccccccccccCcHHHHHHHHhc---
Confidence 1234578999999999998887644 4899999999999987421110 1111111111
Q ss_pred EEecCCCceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCCC
Q 047227 212 FIIGDGNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMES 262 (485)
Q Consensus 212 ~~~g~g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~ 262 (485)
.....+++++|+|++++.++.... ....|+.|++.++..
T Consensus 223 ------~p~~~~~~~~dvA~~v~~l~s~~~------~~~tG~~~~vdgG~~ 261 (263)
T 3ak4_A 223 ------TPLGRIEEPEDVADVVVFLASDAA------RFMTGQGINVTGGVR 261 (263)
T ss_dssp ------CTTCSCBCHHHHHHHHHHHHSGGG------TTCCSCEEEESSSSS
T ss_pred ------CCCCCCcCHHHHHHHHHHHhCccc------cCCCCCEEEECcCEe
Confidence 123458899999999998865211 125789999988754
|
| >1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.87 E-value=1.1e-21 Score=187.34 Aligned_cols=228 Identities=17% Similarity=0.127 Sum_probs=163.1
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhh--hcCCCeEEEEecCCCHHHHHHHhc
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEA--LRSGRAHYVSFDLRHKAQVLQALQ 82 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~Dl~d~~~l~~~~~ 82 (485)
.++|++|||||+|+||+++++.|+++| ++|++++|....... ..... ....++.++.+|++|.+++.++++
T Consensus 12 ~~~k~vlITGasggiG~~~a~~l~~~G-~~V~~~~r~~~~~~~------~~~~l~~~~~~~~~~~~~Dl~~~~~~~~~~~ 84 (265)
T 1h5q_A 12 FVNKTIIVTGGNRGIGLAFTRAVAAAG-ANVAVIYRSAADAVE------VTEKVGKEFGVKTKAYQCDVSNTDIVTKTIQ 84 (265)
T ss_dssp CTTEEEEEETTTSHHHHHHHHHHHHTT-EEEEEEESSCTTHHH------HHHHHHHHHTCCEEEEECCTTCHHHHHHHHH
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCC-CeEEEEeCcchhhHH------HHHHHHHhcCCeeEEEEeeCCCHHHHHHHHH
Confidence 346799999999999999999999999 699999885432110 01111 114578999999999998887765
Q ss_pred -------CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHHHhc----C-CCEEEEecCccccccCCCCcC
Q 047227 83 -------GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDACAEL----K-VKRLIYTSSPSVVFDGVHGII 143 (485)
Q Consensus 83 -------~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~~~~----~-v~r~V~~SS~~vy~~~~~~~~ 143 (485)
++|+|||+|+... ..++++..+++|+.++.++++++... + .+++|++||...+......
T Consensus 85 ~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~-- 162 (265)
T 1h5q_A 85 QIDADLGPISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFNTCRAVAKLWLQKQQKGSIVVTSSMSSQIINQSS-- 162 (265)
T ss_dssp HHHHHSCSEEEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCCEEE--
T ss_pred HHHHhcCCCCEEEECCCcCCCCchhhCCHHHHHHHHhhhhHhHHHHHHHHHHHHHhcCCCceEEEeCCchhhcccccc--
Confidence 3899999999432 22355678999999999999987653 3 4799999998776421110
Q ss_pred CCCCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCce
Q 047227 144 NGNEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNV 220 (485)
Q Consensus 144 ~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~ 220 (485)
. .+..+...|+.+|...|.+++.++.+ .|++++++||+.++++......+..........+ .
T Consensus 163 -~-----~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~---------~ 227 (265)
T 1h5q_A 163 -L-----NGSLTQVFYNSSKAACSNLVKGLAAEWASAGIRVNALSPGYVNTDQTAHMDKKIRDHQASNIP---------L 227 (265)
T ss_dssp -T-----TEECSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCGGGGGSCHHHHHHHHHTCT---------T
T ss_pred -c-----cccccccccHHHHHHHHHHHHHHHHHHHhcCcEEEEEecCccccccccccchhHHHHHHhcCc---------c
Confidence 0 12345678999999999999887643 5899999999999988544332333333322221 2
Q ss_pred eecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCCC
Q 047227 221 YDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMES 262 (485)
Q Consensus 221 ~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~ 262 (485)
..+++++|+|++++.++.... ....|+.|++.++..
T Consensus 228 ~~~~~~~dva~~~~~l~~~~~------~~~~G~~~~v~gG~~ 263 (265)
T 1h5q_A 228 NRFAQPEEMTGQAILLLSDHA------TYMTGGEYFIDGGQL 263 (265)
T ss_dssp SSCBCGGGGHHHHHHHHSGGG------TTCCSCEEEECTTGG
T ss_pred cCCCCHHHHHHHHHhhccCch------hcCcCcEEEecCCEe
Confidence 347899999999998865211 125789999988753
|
| >3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=99.87 E-value=3.3e-21 Score=186.66 Aligned_cols=222 Identities=21% Similarity=0.169 Sum_probs=163.2
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhc---CCCeEEEEecCCCHHHHHHHh
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALR---SGRAHYVSFDLRHKAQVLQAL 81 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~Dl~d~~~l~~~~ 81 (485)
.++|++|||||+|+||+++++.|+++| ++|.+++|....... ....+. ..++.++.+|++|++++.+++
T Consensus 39 l~~k~vlVTGas~GIG~aia~~la~~G-~~V~~~~r~~~~~~~-------~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~ 110 (293)
T 3rih_A 39 LSARSVLVTGGTKGIGRGIATVFARAG-ANVAVAARSPRELSS-------VTAELGELGAGNVIGVRLDVSDPGSCADAA 110 (293)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESSGGGGHH-------HHHHHTTSSSSCEEEEECCTTCHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEECCHHHHHH-------HHHHHHhhCCCcEEEEEEeCCCHHHHHHHH
Confidence 356899999999999999999999999 699999987542111 111111 147899999999998887776
Q ss_pred c-------CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHH----HhcCCCEEEEecCccccccCCCCcC
Q 047227 82 Q-------GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDAC----AELKVKRLIYTSSPSVVFDGVHGII 143 (485)
Q Consensus 82 ~-------~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~----~~~~v~r~V~~SS~~vy~~~~~~~~ 143 (485)
+ +.|++||+||... +.++++..+++|+.++.++.+++ ++.+..++|++||...+..
T Consensus 111 ~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iV~isS~~~~~~------ 184 (293)
T 3rih_A 111 RTVVDAFGALDVVCANAGIFPEARLDTMTPEQLSEVLDVNVKGTVYTVQACLAPLTASGRGRVILTSSITGPVT------ 184 (293)
T ss_dssp HHHHHHHSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHSSCEEEEECCSBTTTB------
T ss_pred HHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEEeChhhccC------
Confidence 4 5899999999321 33456778999999999999987 4566789999999765310
Q ss_pred CCCCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCce
Q 047227 144 NGNEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNV 220 (485)
Q Consensus 144 ~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~ 220 (485)
+..+...|+.+|...+.+.+.++.+ +|+++.+++||.++++......+.+........+.
T Consensus 185 --------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~p~--------- 247 (293)
T 3rih_A 185 --------GYPGWSHYGASKAAQLGFMRTAAIELAPRGVTVNAILPGNILTEGLVDMGEEYISGMARSIPM--------- 247 (293)
T ss_dssp --------BCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCHHHHHTCHHHHHHHHTTSTT---------
T ss_pred --------CCCCCHHHHHHHHHHHHHHHHHHHHHhhhCeEEEEEecCCCcCcchhhccHHHHHHHHhcCCC---------
Confidence 1235678999999999999877654 58999999999999874332223344444443322
Q ss_pred eecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCCCc
Q 047227 221 YDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMESI 263 (485)
Q Consensus 221 ~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~~ 263 (485)
..+..++|+|++++.++.... .-..|+.+++.++..+
T Consensus 248 ~r~~~p~dvA~~v~fL~s~~a------~~itG~~i~vdGG~~~ 284 (293)
T 3rih_A 248 GMLGSPVDIGHLAAFLATDEA------GYITGQAIVVDGGQVL 284 (293)
T ss_dssp SSCBCHHHHHHHHHHHHSGGG------TTCCSCEEEESTTTTC
T ss_pred CCCCCHHHHHHHHHHHhCccc------cCCCCCEEEECCCccC
Confidence 235678999999988865221 2267999999887544
|
| >2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=3.4e-21 Score=182.30 Aligned_cols=223 Identities=17% Similarity=0.151 Sum_probs=154.9
Q ss_pred CCCCCCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCC-ccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHH
Q 047227 1 MSGEENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSD-SIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQ 79 (485)
Q Consensus 1 M~~~~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~ 79 (485)
|+...++|++|||||+|+||+++++.|+++| ++|++++|.. ..... .+.. ...++.++.+|++|++++.+
T Consensus 1 M~~~l~~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~~------~~~~--~~~~~~~~~~Dv~~~~~v~~ 71 (249)
T 2ew8_A 1 MTQRLKDKLAVITGGANGIGRAIAERFAVEG-ADIAIADLVPAPEAEA------AIRN--LGRRVLTVKCDVSQPGDVEA 71 (249)
T ss_dssp --CTTTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSCCHHHHH------HHHH--TTCCEEEEECCTTCHHHHHH
T ss_pred CCCCCCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEcCCchhHHHH------HHHh--cCCcEEEEEeecCCHHHHHH
Confidence 6666778999999999999999999999999 6999998875 21100 0111 13578899999999998887
Q ss_pred Hhc-------CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHH----HHhcCCCEEEEecCccccccCCCC
Q 047227 80 ALQ-------GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDA----CAELKVKRLIYTSSPSVVFDGVHG 141 (485)
Q Consensus 80 ~~~-------~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a----~~~~~v~r~V~~SS~~vy~~~~~~ 141 (485)
+++ ++|+|||+||... ..++++..+++|+.++.++.++ +++.+.+++|++||...+.
T Consensus 72 ~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~----- 146 (249)
T 2ew8_A 72 FGKQVISTFGRCDILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRNGWGRIINLTSTTYWL----- 146 (249)
T ss_dssp HHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGGS-----
T ss_pred HHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCeEEEEEcchhhcc-----
Confidence 753 6999999999432 2335667899999998888777 5566678999999987763
Q ss_pred cCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCC-CChHHHHHHHHcCCCeEEecCC
Q 047227 142 IINGNEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDR-LLVPSLVAAARAGKSKFIIGDG 217 (485)
Q Consensus 142 ~~~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~-~~~~~~~~~~~~g~~~~~~g~g 217 (485)
+..+...|+.+|...|.+.+.++.+ .|+++++++||.+.++... ....... ..... ..
T Consensus 147 ----------~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~-~~~~~-~~------ 208 (249)
T 2ew8_A 147 ----------KIEAYTHYISTKAANIGFTRALASDLGKDGITVNAIAPSLVRTATTEASALSAMF-DVLPN-ML------ 208 (249)
T ss_dssp ----------CCSSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCC-------------------C-TT------
T ss_pred ----------CCCCchhHHHHHHHHHHHHHHHHHHHHhcCcEEEEEecCcCcCccchhccccchh-hHHHH-hh------
Confidence 1234578999999999999887654 5899999999999887432 1110000 00000 00
Q ss_pred CceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCC
Q 047227 218 NNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNME 261 (485)
Q Consensus 218 ~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~ 261 (485)
.....+.+++|+|++++.++... .....|+.+++.++.
T Consensus 209 ~~~~~~~~p~dva~~~~~l~s~~------~~~~tG~~~~vdGG~ 246 (249)
T 2ew8_A 209 QAIPRLQVPLDLTGAAAFLASDD------ASFITGQTLAVDGGM 246 (249)
T ss_dssp SSSCSCCCTHHHHHHHHHHTSGG------GTTCCSCEEEESSSC
T ss_pred CccCCCCCHHHHHHHHHHHcCcc------cCCCCCcEEEECCCc
Confidence 12235789999999999886421 122678999998764
|
| >1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=8.6e-21 Score=182.36 Aligned_cols=218 Identities=16% Similarity=0.050 Sum_probs=157.9
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeec-CCccccCCccchhhhhhhhc---CCCeEEEEecCCCH----HH
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADL-SDSIALEPHEEQGILGEALR---SGRAHYVSFDLRHK----AQ 76 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r-~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~Dl~d~----~~ 76 (485)
+++|++|||||+|+||+++++.|.++| ++|++++| ...... + ....+. ..++.++.+|++|. ++
T Consensus 9 ~~~k~~lVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~----~---~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~ 80 (276)
T 1mxh_A 9 SECPAAVITGGARRIGHSIAVRLHQQG-FRVVVHYRHSEGAAQ----R---LVAELNAARAGSAVLCKGDLSLSSSLLDC 80 (276)
T ss_dssp --CCEEEETTCSSHHHHHHHHHHHHTT-CEEEEEESSCHHHHH----H---HHHHHHHHSTTCEEEEECCCSSSTTHHHH
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCCChHHHH----H---HHHHHHHhcCCceEEEeccCCCccccHHH
Confidence 346799999999999999999999999 69999988 432110 0 111111 35789999999999 88
Q ss_pred HHHHhc-------CCCEEEEcCCCCC-------CC-----------CchhhhHHHHHHHHHHHHHHHHhc---CC-----
Q 047227 77 VLQALQ-------GAEVVFHMAAPNS-------SI-----------NNHKLHHSVNVEGTKNVIDACAEL---KV----- 123 (485)
Q Consensus 77 l~~~~~-------~~d~Vih~aa~~~-------~~-----------~~~~~~~~~nv~~t~~ll~a~~~~---~v----- 123 (485)
+.++++ ++|+|||+||... .. ++++..+++|+.++.++.+++... +.
T Consensus 81 ~~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~ 160 (276)
T 1mxh_A 81 CEDIIDCSFRAFGRCDVLVNNASAYYPTPLLPGDDTNGAADAKPIDAQVAELFGSNAVAPLFLIRAFARRQGEGGAWRSR 160 (276)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCCCCCCCSCC-----------CHHHHHHHHHHHHTHHHHHHHHHHHHTC-------CC
T ss_pred HHHHHHHHHHhcCCCCEEEECCCCCCCCCccccCcccccccccchHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCCCC
Confidence 887775 6899999999321 11 445678999999999999999874 33
Q ss_pred -CEEEEecCccccccCCCCcCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCChH
Q 047227 124 -KRLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLLVP 199 (485)
Q Consensus 124 -~r~V~~SS~~vy~~~~~~~~~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~~~ 199 (485)
+++|++||...+. +..+...|+.+|...+.+.+.++.+ .|+++++++||.+++| . ...+
T Consensus 161 ~g~iv~isS~~~~~---------------~~~~~~~Y~asK~a~~~l~~~la~e~~~~gi~v~~v~PG~v~t~-~-~~~~ 223 (276)
T 1mxh_A 161 NLSVVNLCDAMTDL---------------PLPGFCVYTMAKHALGGLTRAAALELAPRHIRVNAVAPGLSLLP-P-AMPQ 223 (276)
T ss_dssp CEEEEEECCGGGGS---------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSCC-S-SSCH
T ss_pred CcEEEEECchhhcC---------------CCCCCeehHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCcccCC-c-cCCH
Confidence 7999999987763 1235678999999999998887644 4899999999999998 3 2223
Q ss_pred HHHHHHHcCCCeEEecCCCceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCC
Q 047227 200 SLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNME 261 (485)
Q Consensus 200 ~~~~~~~~g~~~~~~g~g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~ 261 (485)
..........+ ..+++.+++|+|++++.++... .....|+.+++.++.
T Consensus 224 ~~~~~~~~~~p--------~~r~~~~~~dva~~v~~l~s~~------~~~~tG~~~~vdgG~ 271 (276)
T 1mxh_A 224 ETQEEYRRKVP--------LGQSEASAAQIADAIAFLVSKD------AGYITGTTLKVDGGL 271 (276)
T ss_dssp HHHHHHHTTCT--------TTSCCBCHHHHHHHHHHHHSGG------GTTCCSCEEEESTTG
T ss_pred HHHHHHHhcCC--------CCCCCCCHHHHHHHHHHHhCcc------ccCccCcEEEECCch
Confidence 33333333221 1123889999999999886521 122568999998764
|
| >2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.87 E-value=2.7e-21 Score=183.84 Aligned_cols=224 Identities=17% Similarity=0.166 Sum_probs=158.5
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc--
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ-- 82 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 82 (485)
.++|++|||||+|+||+++++.|+++| ++|.+++|.... .+ ....+. . .++.+|++|++++.++++
T Consensus 4 l~~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~-----~~---~~~~~~--~-~~~~~D~~~~~~~~~~~~~~ 71 (256)
T 2d1y_A 4 FAGKGVLVTGGARGIGRAIAQAFAREG-ALVALCDLRPEG-----KE---VAEAIG--G-AFFQVDLEDERERVRFVEEA 71 (256)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSTTH-----HH---HHHHHT--C-EEEECCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEeCChhH-----HH---HHHHhh--C-CEEEeeCCCHHHHHHHHHHH
Confidence 457899999999999999999999999 699999887542 11 111121 4 788999999988887765
Q ss_pred -----CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHHHh----cCCCEEEEecCccccccCCCCcCCCC
Q 047227 83 -----GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDACAE----LKVKRLIYTSSPSVVFDGVHGIINGN 146 (485)
Q Consensus 83 -----~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~~~----~~v~r~V~~SS~~vy~~~~~~~~~~~ 146 (485)
++|+|||+||... ..++++..+++|+.++.++.+++.. .+.+++|++||...+.
T Consensus 72 ~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~---------- 141 (256)
T 2d1y_A 72 AYALGRVDVLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVGGGAIVNVASVQGLF---------- 141 (256)
T ss_dssp HHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEECCGGGTS----------
T ss_pred HHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEccccccC----------
Confidence 5899999999322 1234567899999999999888754 4678999999987653
Q ss_pred CCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCChHHHHHHHH-cCCCeEEecCCCceee
Q 047227 147 EALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLLVPSLVAAAR-AGKSKFIIGDGNNVYD 222 (485)
Q Consensus 147 e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~-~g~~~~~~g~g~~~~~ 222 (485)
+..+...|+.+|...|.+.+.++.+ .++++.+++|+.+.++. ...+..... .........+..+...
T Consensus 142 -----~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (256)
T 2d1y_A 142 -----AEQENAAYNASKGGLVNLTRSLALDLAPLRIRVNAVAPGAIATEA----VLEAIALSPDPERTRRDWEDLHALRR 212 (256)
T ss_dssp -----BCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHH----HHHHHC--------CHHHHTTSTTSS
T ss_pred -----CCCCChhHHHHHHHHHHHHHHHHHHHhhcCeEEEEEeeCCccCch----hhhccccccCCHHHHHHHHhcCCCCC
Confidence 1234578999999999998877643 58999999999997652 111100000 1111111122234456
Q ss_pred cccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCCCccH
Q 047227 223 FTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMESIKF 265 (485)
Q Consensus 223 ~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~~t~ 265 (485)
+++++|+|++++.++.... ....|+.|++.++..+++
T Consensus 213 ~~~~~dvA~~~~~l~s~~~------~~~~G~~~~v~gG~~~~~ 249 (256)
T 2d1y_A 213 LGKPEEVAEAVLFLASEKA------SFITGAILPVDGGMTASF 249 (256)
T ss_dssp CBCHHHHHHHHHHHHSGGG------TTCCSCEEEESTTGGGBC
T ss_pred CcCHHHHHHHHHHHhCchh------cCCCCCEEEECCCccccc
Confidence 8999999999998865321 125789999998865543
|
| >2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=9.3e-21 Score=180.86 Aligned_cols=219 Identities=19% Similarity=0.124 Sum_probs=158.7
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc--
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ-- 82 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 82 (485)
.++|++|||||+|+||+++++.|+++| ++|++++|...... + ....+ ..++.++.+|++|++++.++++
T Consensus 10 ~~~k~vlVTGasggiG~~~a~~l~~~G-~~V~~~~r~~~~~~----~---~~~~~-~~~~~~~~~D~~~~~~v~~~~~~~ 80 (265)
T 2o23_A 10 VKGLVAVITGGASGLGLATAERLVGQG-ASAVLLDLPNSGGE----A---QAKKL-GNNCVFAPADVTSEKDVQTALALA 80 (265)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECTTSSHH----H---HHHHH-CTTEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCC-CEEEEEeCCcHhHH----H---HHHHh-CCceEEEEcCCCCHHHHHHHHHHH
Confidence 346899999999999999999999999 68999988753211 0 11111 3578999999999999888876
Q ss_pred -----CCCEEEEcCCCCC-------------CCCchhhhHHHHHHHHHHHHHHHHhc----------CCCEEEEecCccc
Q 047227 83 -----GAEVVFHMAAPNS-------------SINNHKLHHSVNVEGTKNVIDACAEL----------KVKRLIYTSSPSV 134 (485)
Q Consensus 83 -----~~d~Vih~aa~~~-------------~~~~~~~~~~~nv~~t~~ll~a~~~~----------~v~r~V~~SS~~v 134 (485)
++|+|||+||... ..+++...+++|+.++.++++++... +.+++|++||...
T Consensus 81 ~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~isS~~~ 160 (265)
T 2o23_A 81 KGKFGRVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGTFNVIRLVAGEMGQNEPDQGGQRGVIINTASVAA 160 (265)
T ss_dssp HHHHSCCCEEEECCCCCCCCCSEETTTTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECCTHH
T ss_pred HHHCCCCCEEEECCccCCCCccccccccCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccCCCCcEEEEeCChhh
Confidence 7999999999431 22356778999999999999998765 5679999999877
Q ss_pred cccCCCCcCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCChHHHHHHHHcCCCe
Q 047227 135 VFDGVHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSK 211 (485)
Q Consensus 135 y~~~~~~~~~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~ 211 (485)
+.. ..+...|+.+|...+.+.+.++.+ .++++++++||.+.++.....-...........+.
T Consensus 161 ~~~---------------~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~ 225 (265)
T 2o23_A 161 FEG---------------QVGQAAYSASKGGIVGMTLPIARDLAPIGIRVMTIAPGLFGTPLLTSLPEKVCNFLASQVPF 225 (265)
T ss_dssp HHC---------------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCC----------CHHHHTCSS
T ss_pred cCC---------------CCCCchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeccccCccccccCHHHHHHHHHcCCC
Confidence 631 234678999999999988876543 58999999999998875322111111111111110
Q ss_pred EEecCCCceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCCCc
Q 047227 212 FIIGDGNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMESI 263 (485)
Q Consensus 212 ~~~g~g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~~ 263 (485)
...+.+++|+|++++.+++ .+...|+.+++.++..+
T Consensus 226 --------~~~~~~~~dva~~~~~l~~--------~~~~~G~~i~vdgG~~~ 261 (265)
T 2o23_A 226 --------PSRLGDPAEYAHLVQAIIE--------NPFLNGEVIRLDGAIRM 261 (265)
T ss_dssp --------SCSCBCHHHHHHHHHHHHH--------CTTCCSCEEEESTTCCC
T ss_pred --------cCCCCCHHHHHHHHHHHhh--------cCccCceEEEECCCEec
Confidence 1347889999999998875 23367899999887543
|
| >2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.87 E-value=8.1e-21 Score=183.44 Aligned_cols=218 Identities=11% Similarity=0.079 Sum_probs=156.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhc--CCCeEEEEecCCCHHHHHHHhc-
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALR--SGRAHYVSFDLRHKAQVLQALQ- 82 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~Dl~d~~~l~~~~~- 82 (485)
++|++|||||+|+||+++++.|+++| ++|++++|...... . ....+. ..++.++.+|++|.+++.++++
T Consensus 43 ~~k~vlITGasggIG~~la~~L~~~G-~~V~~~~r~~~~~~----~---~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~ 114 (285)
T 2c07_A 43 ENKVALVTGAGRGIGREIAKMLAKSV-SHVICISRTQKSCD----S---VVDEIKSFGYESSGYAGDVSKKEEISEVINK 114 (285)
T ss_dssp SSCEEEEESTTSHHHHHHHHHHTTTS-SEEEEEESSHHHHH----H---HHHHHHTTTCCEEEEECCTTCHHHHHHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHcC-CEEEEEcCCHHHHH----H---HHHHHHhcCCceeEEECCCCCHHHHHHHHHH
Confidence 46899999999999999999999999 68988877543110 0 111111 3568899999999999888774
Q ss_pred ------CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHHH----hcCCCEEEEecCccccccCCCCcCCC
Q 047227 83 ------GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDACA----ELKVKRLIYTSSPSVVFDGVHGIING 145 (485)
Q Consensus 83 ------~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~~----~~~v~r~V~~SS~~vy~~~~~~~~~~ 145 (485)
++|+|||+||... ..++++..+++|+.++.++.+++. +.+.+++|++||...+..
T Consensus 115 ~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~-------- 186 (285)
T 2c07_A 115 ILTEHKNVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINNRYGRIINISSIVGLTG-------- 186 (285)
T ss_dssp HHHHCSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHC--------
T ss_pred HHHhcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCEEEEECChhhccC--------
Confidence 5899999999322 233567789999999888777765 456789999999876631
Q ss_pred CCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCceee
Q 047227 146 NEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYD 222 (485)
Q Consensus 146 ~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~ 222 (485)
..+...|+.+|...|.+.+.++.+ .|++++++||+.+.++......+.+........+ ...
T Consensus 187 -------~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~---------~~~ 250 (285)
T 2c07_A 187 -------NVGQANYSSSKAGVIGFTKSLAKELASRNITVNAIAPGFISSDMTDKISEQIKKNIISNIP---------AGR 250 (285)
T ss_dssp -------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCC-----CCHHHHHHHHTTCT---------TSS
T ss_pred -------CCCCchHHHHHHHHHHHHHHHHHHHHHhCcEEEEEEeCcEecCchhhcCHHHHHHHHhhCC---------CCC
Confidence 234578999999999988877643 4899999999999987544333333333332211 134
Q ss_pred cccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCC
Q 047227 223 FTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNME 261 (485)
Q Consensus 223 ~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~ 261 (485)
+++++|+|++++.++.... ....|+.+++.++.
T Consensus 251 ~~~~~dvA~~~~~l~~~~~------~~~~G~~i~v~gG~ 283 (285)
T 2c07_A 251 MGTPEEVANLACFLSSDKS------GYINGRVFVIDGGL 283 (285)
T ss_dssp CBCHHHHHHHHHHHHSGGG------TTCCSCEEEESTTS
T ss_pred CCCHHHHHHHHHHHhCCCc------CCCCCCEEEeCCCc
Confidence 8899999999998865211 12568899998764
|
| >3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.9e-21 Score=184.89 Aligned_cols=224 Identities=16% Similarity=0.122 Sum_probs=163.8
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhh-hcCCCeEEEEecCCCHHHHHHHhc-
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEA-LRSGRAHYVSFDLRHKAQVLQALQ- 82 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~l~~~~~- 82 (485)
.++|++|||||+|+||+++++.|.++| ++|.+++|....... ..... ....++.++.+|++|++++.++++
T Consensus 10 l~~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~------~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~ 82 (256)
T 3gaf_A 10 LNDAVAIVTGAAAGIGRAIAGTFAKAG-ASVVVTDLKSEGAEA------VAAAIRQAGGKAIGLECNVTDEQHREAVIKA 82 (256)
T ss_dssp CTTCEEEECSCSSHHHHHHHHHHHHHT-CEEEEEESSHHHHHH------HHHHHHHTTCCEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHH------HHHHHHhcCCcEEEEECCCCCHHHHHHHHHH
Confidence 457899999999999999999999999 689999886532111 01111 114578999999999998887775
Q ss_pred ------CCCEEEEcCCCCC------CCCchhhhHHHHHHHHHHHHHHHH----hcCCCEEEEecCccccccCCCCcCCCC
Q 047227 83 ------GAEVVFHMAAPNS------SINNHKLHHSVNVEGTKNVIDACA----ELKVKRLIYTSSPSVVFDGVHGIINGN 146 (485)
Q Consensus 83 ------~~d~Vih~aa~~~------~~~~~~~~~~~nv~~t~~ll~a~~----~~~v~r~V~~SS~~vy~~~~~~~~~~~ 146 (485)
+.|++||+||... +.++++..+++|+.++.++.+++. +.+..++|++||...+.
T Consensus 83 ~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~---------- 152 (256)
T 3gaf_A 83 ALDQFGKITVLVNNAGGGGPKPFDMPMSDFEWAFKLNLFSLFRLSQLAAPHMQKAGGGAILNISSMAGEN---------- 152 (256)
T ss_dssp HHHHHSCCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTC----------
T ss_pred HHHHcCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcCHHHcC----------
Confidence 6999999999322 234667789999999999999874 45567999999987752
Q ss_pred CCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCC-ChHHHHHHHHcCCCeEEecCCCceee
Q 047227 147 EALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRL-LVPSLVAAARAGKSKFIIGDGNNVYD 222 (485)
Q Consensus 147 e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~-~~~~~~~~~~~g~~~~~~g~g~~~~~ 222 (485)
+..+...|+.+|...+.+.+.++.+ .|+++.+++||.+..+.... ..+.......... ....
T Consensus 153 -----~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~---------p~~r 218 (256)
T 3gaf_A 153 -----TNVRMASYGSSKAAVNHLTRNIAFDVGPMGIRVNAIAPGAIKTDALATVLTPEIERAMLKHT---------PLGR 218 (256)
T ss_dssp -----CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCHHHHHHCCHHHHHHHHTTC---------TTSS
T ss_pred -----CCCCchHHHHHHHHHHHHHHHHHHHHhhhCcEEEEEEEccccCchhhhccCHHHHHHHHhcC---------CCCC
Confidence 2345678999999999999887654 58999999999998763211 0122223333222 2345
Q ss_pred cccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCCCccH
Q 047227 223 FTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMESIKF 265 (485)
Q Consensus 223 ~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~~t~ 265 (485)
+.+++|+|++++.++... ..-..|+.+++.++...++
T Consensus 219 ~~~~~dva~~~~~L~s~~------~~~itG~~i~vdgG~~~~~ 255 (256)
T 3gaf_A 219 LGEAQDIANAALFLCSPA------AAWISGQVLTVSGGGVQEL 255 (256)
T ss_dssp CBCHHHHHHHHHHHHSGG------GTTCCSCEEEESTTSCCC-
T ss_pred CCCHHHHHHHHHHHcCCc------ccCccCCEEEECCCccccC
Confidence 788999999999886522 1226799999998866553
|
| >3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.5e-21 Score=185.47 Aligned_cols=225 Identities=15% Similarity=0.100 Sum_probs=163.2
Q ss_pred CCCCCCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhh--cCCCeEEEEecCCCHHHHH
Q 047227 1 MSGEENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEAL--RSGRAHYVSFDLRHKAQVL 78 (485)
Q Consensus 1 M~~~~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~Dl~d~~~l~ 78 (485)
|+...++|++|||||+|+||+++++.|.++| ++|.+++|....... ....+ ...++..+.+|++|.+++.
T Consensus 22 m~~~l~~k~~lVTGas~GIG~aia~~la~~G-~~V~~~~r~~~~~~~-------~~~~~~~~~~~~~~~~~Dv~d~~~v~ 93 (270)
T 3ftp_A 22 MDKTLDKQVAIVTGASRGIGRAIALELARRG-AMVIGTATTEAGAEG-------IGAAFKQAGLEGRGAVLNVNDATAVD 93 (270)
T ss_dssp -CCTTTTCEEEETTCSSHHHHHHHHHHHHTT-CEEEEEESSHHHHHH-------HHHHHHHHTCCCEEEECCTTCHHHHH
T ss_pred cccCCCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHH-------HHHHHHhcCCcEEEEEEeCCCHHHHH
Confidence 4445667899999999999999999999999 699999886432111 11111 1357889999999999888
Q ss_pred HHhc-------CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHHHh----cCCCEEEEecCccccccCCC
Q 047227 79 QALQ-------GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDACAE----LKVKRLIYTSSPSVVFDGVH 140 (485)
Q Consensus 79 ~~~~-------~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~~~----~~v~r~V~~SS~~vy~~~~~ 140 (485)
++++ +.|++||+||... ..++++..+++|+.++.++.+++.. .+..++|++||...+.
T Consensus 94 ~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~---- 169 (270)
T 3ftp_A 94 ALVESTLKEFGALNVLVNNAGITQDQLAMRMKDDEWDAVIDTNLKAVFRLSRAVLRPMMKARGGRIVNITSVVGSA---- 169 (270)
T ss_dssp HHHHHHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHH----
T ss_pred HHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEECchhhCC----
Confidence 8775 6999999999321 3345677899999999999988753 3456899999987763
Q ss_pred CcCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCC
Q 047227 141 GIINGNEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDG 217 (485)
Q Consensus 141 ~~~~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g 217 (485)
+..+...|+.+|...+.+.+.++.+ .|+++.+++||.+..+.................
T Consensus 170 -----------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~-------- 230 (270)
T 3ftp_A 170 -----------GNPGQVNYAAAKAGVAGMTRALAREIGSRGITVNCVAPGFIDTDMTKGLPQEQQTALKTQI-------- 230 (270)
T ss_dssp -----------CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSHHHHHSCHHHHHHHHTTC--------
T ss_pred -----------CCCCchhHHHHHHHHHHHHHHHHHHHhhhCeEEEEEEeCCCcCcchhhcCHHHHHHHHhcC--------
Confidence 1245678999999999888877654 589999999999987632211122222222222
Q ss_pred CceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCCCc
Q 047227 218 NNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMESI 263 (485)
Q Consensus 218 ~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~~ 263 (485)
....+.+++|+|++++.++... ..-..|+.+++.++..+
T Consensus 231 -p~~r~~~pedvA~~v~~L~s~~------~~~itG~~i~vdGG~~~ 269 (270)
T 3ftp_A 231 -PLGRLGSPEDIAHAVAFLASPQ------AGYITGTTLHVNGGMFM 269 (270)
T ss_dssp -TTCSCBCHHHHHHHHHHHHSGG------GTTCCSCEEEESTTSSC
T ss_pred -CCCCCCCHHHHHHHHHHHhCCC------cCCccCcEEEECCCccc
Confidence 2345788999999999886421 12267999999887544
|
| >2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A | Back alignment and structure |
|---|
Probab=99.86 E-value=1.2e-20 Score=179.31 Aligned_cols=223 Identities=15% Similarity=0.130 Sum_probs=157.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhh-cCCCeEEEEecCCCHHHHHHHhc--
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEAL-RSGRAHYVSFDLRHKAQVLQALQ-- 82 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~-- 82 (485)
++|++|||||+|+||+++++.|+++| ++|++++|... .. ...... ...++.++.+|++|++++.++++
T Consensus 3 ~~k~vlVTGas~giG~~ia~~l~~~G-~~V~~~~r~~~------~~--~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~ 73 (255)
T 2q2v_A 3 KGKTALVTGSTSGIGLGIAQVLARAG-ANIVLNGFGDP------AP--ALAEIARHGVKAVHHPADLSDVAQIEALFALA 73 (255)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHTT-CEEEEECSSCC------HH--HHHHHHTTSCCEEEECCCTTSHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCCch------HH--HHHHHHhcCCceEEEeCCCCCHHHHHHHHHHH
Confidence 46899999999999999999999999 68999887643 11 011111 13468889999999999988886
Q ss_pred -----CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHH----HHhcCCCEEEEecCccccccCCCCcCCCC
Q 047227 83 -----GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDA----CAELKVKRLIYTSSPSVVFDGVHGIINGN 146 (485)
Q Consensus 83 -----~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a----~~~~~v~r~V~~SS~~vy~~~~~~~~~~~ 146 (485)
++|+|||+||... ..++++..+++|+.++.++.++ +++.+.+++|++||...+..
T Consensus 74 ~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~--------- 144 (255)
T 2q2v_A 74 EREFGGVDILVNNAGIQHVAPVEQFPLESWDKIIALNLSAVFHGTRLALPGMRARNWGRIINIASVHGLVG--------- 144 (255)
T ss_dssp HHHHSSCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTSC---------
T ss_pred HHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEcCchhccC---------
Confidence 7999999999432 2335677899999976666555 46677789999999877631
Q ss_pred CCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCChHHHHHHHHcCCCe----EEe-cCCC
Q 047227 147 EALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSK----FII-GDGN 218 (485)
Q Consensus 147 e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~----~~~-g~g~ 218 (485)
..+...|+.+|...+.+.+.++.+ .|++++++|||.+++|......... ... +... ..+ ....
T Consensus 145 ------~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~ 215 (255)
T 2q2v_A 145 ------STGKAAYVAAKHGVVGLTKVVGLETATSNVTCNAICPGWVLTPLVQKQIDDR-AAN--GGDPLQAQHDLLAEKQ 215 (255)
T ss_dssp ------CTTBHHHHHHHHHHHHHHHHHHHHTTTSSEEEEEEEESSBCCHHHHHHHHHH-HHH--TCCHHHHHHHHHTTTC
T ss_pred ------CCCchhHHHHHHHHHHHHHHHHHHhcccCcEEEEEeeCCCcCcchhhhcccc-ccc--ccchHHHHHHHHhccC
Confidence 234578999999999998887643 5899999999999987422111000 000 0000 001 1223
Q ss_pred ceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCC
Q 047227 219 NVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNME 261 (485)
Q Consensus 219 ~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~ 261 (485)
....+++++|+|++++.++.... ....|+.|++.++.
T Consensus 216 p~~~~~~~~dvA~~~~~l~s~~~------~~~tG~~~~vdgG~ 252 (255)
T 2q2v_A 216 PSLAFVTPEHLGELVLFLCSEAG------SQVRGAAWNVDGGW 252 (255)
T ss_dssp TTCCCBCHHHHHHHHHHHTSGGG------TTCCSCEEEESTTG
T ss_pred CCCCCcCHHHHHHHHHHHhCCcc------CCCCCCEEEECCCc
Confidence 34568999999999998754211 12568999998864
|
| >3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.86 E-value=9.5e-21 Score=178.97 Aligned_cols=221 Identities=14% Similarity=0.067 Sum_probs=164.8
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhh--cCCCeEEEEecCCCHHHHHHHhc
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEAL--RSGRAHYVSFDLRHKAQVLQALQ 82 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~Dl~d~~~l~~~~~ 82 (485)
.++|++|||||+|+||+++++.|+++| ++|.+++|....... ....+ ...++.++.+|++|++++.++++
T Consensus 3 l~~k~vlITGas~gIG~~~a~~l~~~G-~~v~~~~r~~~~~~~-------~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 74 (247)
T 3lyl_A 3 LNEKVALVTGASRGIGFEVAHALASKG-ATVVGTATSQASAEK-------FENSMKEKGFKARGLVLNISDIESIQNFFA 74 (247)
T ss_dssp TTTCEEEESSCSSHHHHHHHHHHHHTT-CEEEEEESSHHHHHH-------HHHHHHHTTCCEEEEECCTTCHHHHHHHHH
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCC-CEEEEEeCCHHHHHH-------HHHHHHhcCCceEEEEecCCCHHHHHHHHH
Confidence 356899999999999999999999999 699999886542111 11111 13578999999999998887764
Q ss_pred -------CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHHHh----cCCCEEEEecCccccccCCCCcCC
Q 047227 83 -------GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDACAE----LKVKRLIYTSSPSVVFDGVHGIIN 144 (485)
Q Consensus 83 -------~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~~~----~~v~r~V~~SS~~vy~~~~~~~~~ 144 (485)
+.|+|||+||... +.++++..+++|+.++.++.+++.. .+..++|++||...+.
T Consensus 75 ~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~-------- 146 (247)
T 3lyl_A 75 EIKAENLAIDILVNNAGITRDNLMMRMSEDEWQSVINTNLSSIFRMSKECVRGMMKKRWGRIISIGSVVGSA-------- 146 (247)
T ss_dssp HHHHTTCCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHHH--------
T ss_pred HHHHHcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCeEEEEEcchhhcc--------
Confidence 4899999999432 3345677899999999999888654 3456999999987763
Q ss_pred CCCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCcee
Q 047227 145 GNEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVY 221 (485)
Q Consensus 145 ~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~~ 221 (485)
+..+...|+.+|...+.+.+.++.+ .|+++.+++||.+..+......+......... ....
T Consensus 147 -------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~---------~~~~ 210 (247)
T 3lyl_A 147 -------GNPGQTNYCAAKAGVIGFSKSLAYEVASRNITVNVVAPGFIATDMTDKLTDEQKSFIATK---------IPSG 210 (247)
T ss_dssp -------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTTTTSCHHHHHHHHTT---------STTC
T ss_pred -------CCCCcHHHHHHHHHHHHHHHHHHHHHHHcCeEEEEEeeCcEecccchhccHHHHHHHhhc---------CCCC
Confidence 1235678999999988888877643 58999999999999886554444443333322 2335
Q ss_pred ecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCCCc
Q 047227 222 DFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMESI 263 (485)
Q Consensus 222 ~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~~ 263 (485)
.+.+++|+|++++.++.... ....|+.+++.++..+
T Consensus 211 ~~~~~~dva~~i~~l~s~~~------~~~tG~~i~vdgG~~~ 246 (247)
T 3lyl_A 211 QIGEPKDIAAAVAFLASEEA------KYITGQTLHVNGGMYM 246 (247)
T ss_dssp CCBCHHHHHHHHHHHHSGGG------TTCCSCEEEESTTSSC
T ss_pred CCcCHHHHHHHHHHHhCCCc------CCccCCEEEECCCEec
Confidence 68899999999998865322 2267999999887544
|
| >2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=4.3e-21 Score=182.95 Aligned_cols=225 Identities=13% Similarity=0.036 Sum_probs=162.6
Q ss_pred CCCCCEEEEEcCC--CchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhc-CCCeEEEEecCCCHHHHHHH
Q 047227 4 EENERLCVVTGGR--GFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALR-SGRAHYVSFDLRHKAQVLQA 80 (485)
Q Consensus 4 ~~~~~~iLVtGgt--G~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~Dl~d~~~l~~~ 80 (485)
..++|++|||||+ |+||+++++.|.++| ++|++++|... .... ...... .+++.++.+|++|++++.++
T Consensus 5 ~l~~k~vlVTGas~~~gIG~~ia~~l~~~G-~~V~~~~r~~~----~~~~---~~~l~~~~~~~~~~~~D~~~~~~v~~~ 76 (261)
T 2wyu_A 5 DLSGKKALVMGVTNQRSLGFAIAAKLKEAG-AEVALSYQAER----LRPE---AEKLAEALGGALLFRADVTQDEELDAL 76 (261)
T ss_dssp CCTTCEEEEESCCSSSSHHHHHHHHHHHHT-CEEEEEESCGG----GHHH---HHHHHHHTTCCEEEECCTTCHHHHHHH
T ss_pred CCCCCEEEEECCCCCCcHHHHHHHHHHHCC-CEEEEEcCCHH----HHHH---HHHHHHhcCCcEEEECCCCCHHHHHHH
Confidence 4567899999999 999999999999999 68999988642 0001 111111 13478999999999988887
Q ss_pred hc-------CCCEEEEcCCCCC-----------CCCchhhhHHHHHHHHHHHHHHHHhcC--CCEEEEecCccccccCCC
Q 047227 81 LQ-------GAEVVFHMAAPNS-----------SINNHKLHHSVNVEGTKNVIDACAELK--VKRLIYTSSPSVVFDGVH 140 (485)
Q Consensus 81 ~~-------~~d~Vih~aa~~~-----------~~~~~~~~~~~nv~~t~~ll~a~~~~~--v~r~V~~SS~~vy~~~~~ 140 (485)
++ ++|+|||+||... +.++++..+++|+.++.++.+++...- -.++|++||...+.
T Consensus 77 ~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~---- 152 (261)
T 2wyu_A 77 FAGVKEAFGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLTYYASEK---- 152 (261)
T ss_dssp HHHHHHHHSSEEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEECGGGTS----
T ss_pred HHHHHHHcCCCCEEEECCCCCCcccCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHhccCCEEEEEecccccC----
Confidence 75 6899999999432 234567789999999999999998751 24899999976652
Q ss_pred CcCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCC--ChHHHHHHHHcCCCeEEec
Q 047227 141 GIINGNEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRL--LVPSLVAAARAGKSKFIIG 215 (485)
Q Consensus 141 ~~~~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~--~~~~~~~~~~~g~~~~~~g 215 (485)
+..+...|+.+|...|.+.+.++.+ .|+++.+++||.++++.... ..+.+........+
T Consensus 153 -----------~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~p----- 216 (261)
T 2wyu_A 153 -----------VVPKYNVMAIAKAALEASVRYLAYELGPKGVRVNAISAGPVRTVAARSIPGFTKMYDRVAQTAP----- 216 (261)
T ss_dssp -----------BCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCCCCTGGGGCTTHHHHHHHHHHHST-----
T ss_pred -----------CCCCchHHHHHHHHHHHHHHHHHHHHhhhCcEEEEEeeCCCcCchhhhccccHHHHHHHHhcCC-----
Confidence 1234568999999999999887654 48999999999999885332 12333333332222
Q ss_pred CCCceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCCCccHH
Q 047227 216 DGNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMESIKFW 266 (485)
Q Consensus 216 ~g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~~t~~ 266 (485)
...+.+++|+|++++.++.... ....|+.|++.++..++..
T Consensus 217 ----~~~~~~~~dva~~v~~l~s~~~------~~~tG~~~~vdgG~~~~~~ 257 (261)
T 2wyu_A 217 ----LRRNITQEEVGNLGLFLLSPLA------SGITGEVVYVDAGYHIMGM 257 (261)
T ss_dssp ----TSSCCCHHHHHHHHHHHHSGGG------TTCCSCEEEESTTGGGBC-
T ss_pred ----CCCCCCHHHHHHHHHHHcChhh------cCCCCCEEEECCCccccCC
Confidence 1246789999999998865211 2256899999988655433
|
| >2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.86 E-value=2.1e-21 Score=185.74 Aligned_cols=236 Identities=17% Similarity=0.165 Sum_probs=159.9
Q ss_pred CCCCCCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHH
Q 047227 1 MSGEENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQA 80 (485)
Q Consensus 1 M~~~~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~ 80 (485)
|+...+++++|||||+|+||+++++.|+++| ++|++++|..........+ +.......++.++.+|++|++++.++
T Consensus 1 M~~m~~~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~---l~~~~~~~~~~~~~~D~~~~~~v~~~ 76 (267)
T 2gdz_A 1 MAHMVNGKVALVTGAAQGIGRAFAEALLLKG-AKVALVDWNLEAGVQCKAA---LHEQFEPQKTLFIQCDVADQQQLRDT 76 (267)
T ss_dssp -CCCCTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHH---HTTTSCGGGEEEEECCTTSHHHHHHH
T ss_pred CCcccCCCEEEEECCCCcHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHH---HHhhcCCCceEEEecCCCCHHHHHHH
Confidence 5544567899999999999999999999999 6999998864321100000 01101124688999999999988887
Q ss_pred hc-------CCCEEEEcCCCCCCCCchhhhHHHHHHHHH----HHHHHHHhcC---CCEEEEecCccccccCCCCcCCCC
Q 047227 81 LQ-------GAEVVFHMAAPNSSINNHKLHHSVNVEGTK----NVIDACAELK---VKRLIYTSSPSVVFDGVHGIINGN 146 (485)
Q Consensus 81 ~~-------~~d~Vih~aa~~~~~~~~~~~~~~nv~~t~----~ll~a~~~~~---v~r~V~~SS~~vy~~~~~~~~~~~ 146 (485)
++ ++|+|||+||... ..+++..+++|+.++. .++..+++.+ .+++|++||...+..
T Consensus 77 ~~~~~~~~g~id~lv~~Ag~~~-~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~--------- 146 (267)
T 2gdz_A 77 FRKVVDHFGRLDILVNNAGVNN-EKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLAGLMP--------- 146 (267)
T ss_dssp HHHHHHHHSCCCEEEECCCCCC-SSSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTSC---------
T ss_pred HHHHHHHcCCCCEEEECCCCCC-hhhHHHHHhHHHHHHHHHHHHHHHHHHhccCCCCCEEEEeCCccccCC---------
Confidence 75 4799999999543 4567888999998654 4555565543 579999999877631
Q ss_pred CCCCCCCCCCchHHHHHHHHHHHHHHHh-----CCCCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEE---ecCCC
Q 047227 147 EALPYPPKHNDFYSATKAEGEALVIKAN-----GTNGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFI---IGDGN 218 (485)
Q Consensus 147 e~~~~~~~~~~~Y~~sK~~~E~~~~~~~-----~~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~---~g~g~ 218 (485)
..+...|+.+|...|.+.+.++ ...|+++++++||.+.++........ ... +..... .....
T Consensus 147 ------~~~~~~Y~~sK~a~~~~~~~~ala~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~--~~~--~~~~~~~~~~~~~~ 216 (267)
T 2gdz_A 147 ------VAQQPVYCASKHGIVGFTRSAALAANLMNSGVRLNAICPGFVNTAILESIEKE--ENM--GQYIEYKDHIKDMI 216 (267)
T ss_dssp ------CTTCHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEESCBSSHHHHGGGCH--HHH--GGGGGGHHHHHHHH
T ss_pred ------CCCCchHHHHHHHHHHHHHHHHHHHHhccCCcEEEEEecCcCcchhhhccccc--ccc--chhhhHHHHHHHHh
Confidence 2345689999999999887631 34789999999999987631110000 000 000000 00001
Q ss_pred ceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCCCccHHHH
Q 047227 219 NVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMESIKFWEF 268 (485)
Q Consensus 219 ~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~~t~~el 268 (485)
....+++++|+|++++.++. .+...|+.+++++++.+++.|+
T Consensus 217 ~~~~~~~~~dvA~~v~~l~s--------~~~~~G~~~~v~gg~~~~~~~~ 258 (267)
T 2gdz_A 217 KYYGILDPPLIANGLITLIE--------DDALNGAIMKITTSKGIHFQDY 258 (267)
T ss_dssp HHHCCBCHHHHHHHHHHHHH--------CTTCSSCEEEEETTTEEEECCC
T ss_pred ccccCCCHHHHHHHHHHHhc--------CcCCCCcEEEecCCCcccccCc
Confidence 12347899999999998876 2236799999999887776553
|
| >2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=2.6e-21 Score=184.29 Aligned_cols=223 Identities=12% Similarity=0.044 Sum_probs=160.5
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhh-cCCCeEEEEecCCCHHHHHHHhc-
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEAL-RSGRAHYVSFDLRHKAQVLQALQ- 82 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~- 82 (485)
.++|++|||||+|+||+++++.|+++| ++|++++|....... ...... ...++.++.+|++|++++.++++
T Consensus 12 l~~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~------~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~ 84 (260)
T 2zat_A 12 LENKVALVTASTDGIGLAIARRLAQDG-AHVVVSSRKQENVDR------TVATLQGEGLSVTGTVCHVGKAEDRERLVAM 84 (260)
T ss_dssp TTTCEEEESSCSSHHHHHHHHHHHHTT-CEEEEEESCHHHHHH------HHHHHHHTTCCEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHH------HHHHHHhcCCceEEEEccCCCHHHHHHHHHH
Confidence 346899999999999999999999999 699999886532110 011111 13468899999999998887775
Q ss_pred ------CCCEEEEcCCCCC--------CCCchhhhHHHHHHHHHHHHHHHH----hcCCCEEEEecCccccccCCCCcCC
Q 047227 83 ------GAEVVFHMAAPNS--------SINNHKLHHSVNVEGTKNVIDACA----ELKVKRLIYTSSPSVVFDGVHGIIN 144 (485)
Q Consensus 83 ------~~d~Vih~aa~~~--------~~~~~~~~~~~nv~~t~~ll~a~~----~~~v~r~V~~SS~~vy~~~~~~~~~ 144 (485)
++|+|||+||... ..++++..+++|+.++.++.+++. +.+.+++|++||...|.
T Consensus 85 ~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~-------- 156 (260)
T 2zat_A 85 AVNLHGGVDILVSNAAVNPFFGNIIDATEEVWDKILHVNVKATVLMTKAVVPEMEKRGGGSVLIVSSVGAYH-------- 156 (260)
T ss_dssp HHHHHSCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTS--------
T ss_pred HHHHcCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEEechhhcC--------
Confidence 6999999999421 223456789999999998888864 45678999999988763
Q ss_pred CCCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCCh--HHHHHHHHcCCCeEEecCCCc
Q 047227 145 GNEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLLV--PSLVAAARAGKSKFIIGDGNN 219 (485)
Q Consensus 145 ~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~~--~~~~~~~~~g~~~~~~g~g~~ 219 (485)
+..+...|+.+|...|.+.+.++.+ .|+++.+++|+.+.++...... ......... ...
T Consensus 157 -------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~---------~~~ 220 (260)
T 2zat_A 157 -------PFPNLGPYNVSKTALLGLTKNLAVELAPRNIRVNCLAPGLIKTNFSQVLWMDKARKEYMKE---------SLR 220 (260)
T ss_dssp -------CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSSTTHHHHSSHHHHHHHHH---------HHT
T ss_pred -------CCCCchhHHHHHHHHHHHHHHHHHHhcccCeEEEEEEECcccCccchhcccChHHHHHHHh---------cCC
Confidence 1245678999999999999887644 4899999999999877422100 001111111 112
Q ss_pred eeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCCCcc
Q 047227 220 VYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMESIK 264 (485)
Q Consensus 220 ~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~~t 264 (485)
...+.+++|+|+++..++.... .-..|+.+++.++...+
T Consensus 221 ~~~~~~~~dva~~v~~l~s~~~------~~~tG~~~~vdgG~~~s 259 (260)
T 2zat_A 221 IRRLGNPEDCAGIVSFLCSEDA------SYITGETVVVGGGTASR 259 (260)
T ss_dssp CSSCBCGGGGHHHHHHHTSGGG------TTCCSCEEEESTTCCCC
T ss_pred CCCCCCHHHHHHHHHHHcCccc------CCccCCEEEECCCcccc
Confidence 3458899999999988754211 12578999999987654
|
| >3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.86 E-value=3.1e-21 Score=184.29 Aligned_cols=224 Identities=19% Similarity=0.172 Sum_probs=163.0
Q ss_pred CCCCCCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhh-hcCCCeEEEEecCCCHHHHHH
Q 047227 1 MSGEENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEA-LRSGRAHYVSFDLRHKAQVLQ 79 (485)
Q Consensus 1 M~~~~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~l~~ 79 (485)
|+...++|++|||||+|+||+++++.|.++| ++|.+.+|....... ..... ....++.++.+|++|++++.+
T Consensus 5 m~~~l~~k~vlVTGas~gIG~aia~~l~~~G-~~V~~~~r~~~~~~~------~~~~~~~~~~~~~~~~~Dv~~~~~v~~ 77 (264)
T 3ucx_A 5 MGGLLTDKVVVISGVGPALGTTLARRCAEQG-ADLVLAARTVERLED------VAKQVTDTGRRALSVGTDITDDAQVAH 77 (264)
T ss_dssp --CTTTTCEEEEESCCTTHHHHHHHHHHHTT-CEEEEEESCHHHHHH------HHHHHHHTTCCEEEEECCTTCHHHHHH
T ss_pred cCCCcCCcEEEEECCCcHHHHHHHHHHHHCc-CEEEEEeCCHHHHHH------HHHHHHhcCCcEEEEEcCCCCHHHHHH
Confidence 5556678999999999999999999999999 689999886432111 01111 114578999999999998888
Q ss_pred Hhc-------CCCEEEEcCCCC--------CCCCchhhhHHHHHHHHHHHHHHHHh----cCCCEEEEecCccccccCCC
Q 047227 80 ALQ-------GAEVVFHMAAPN--------SSINNHKLHHSVNVEGTKNVIDACAE----LKVKRLIYTSSPSVVFDGVH 140 (485)
Q Consensus 80 ~~~-------~~d~Vih~aa~~--------~~~~~~~~~~~~nv~~t~~ll~a~~~----~~v~r~V~~SS~~vy~~~~~ 140 (485)
+++ +.|++||+|+.. .+.++++..+++|+.++.++.+++.. .+ .++|++||...+.
T Consensus 78 ~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-g~iv~isS~~~~~---- 152 (264)
T 3ucx_A 78 LVDETMKAYGRVDVVINNAFRVPSMKPFANTTFEHMRDAIELTVFGALRLIQGFTPALEESK-GAVVNVNSMVVRH---- 152 (264)
T ss_dssp HHHHHHHHTSCCSEEEECCCSCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHT-CEEEEECCGGGGC----
T ss_pred HHHHHHHHcCCCcEEEECCCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CEEEEECcchhcc----
Confidence 775 589999999832 12245677899999999999988653 23 6999999987753
Q ss_pred CcCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCCh-----------HHHHHHHH
Q 047227 141 GIINGNEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLLV-----------PSLVAAAR 206 (485)
Q Consensus 141 ~~~~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~~-----------~~~~~~~~ 206 (485)
+..+...|+.+|+..+.+.+.++.+ +|+++.+++||.++++...... ..+.....
T Consensus 153 -----------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (264)
T 3ucx_A 153 -----------SQAKYGAYKMAKSALLAMSQTLATELGEKGIRVNSVLPGYIWGGTLKSYFEHQAGKYGTSVEDIYNAAA 221 (264)
T ss_dssp -----------CCTTCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSCBSHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred -----------CCCccHHHHHHHHHHHHHHHHHHHHhCccCeEEEEEecCccccccHHHHHHhhhhhcCCCHHHHHHHHh
Confidence 2345678999999999998887654 6899999999999887422111 11222222
Q ss_pred cCCCeEEecCCCceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCCC
Q 047227 207 AGKSKFIIGDGNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMES 262 (485)
Q Consensus 207 ~g~~~~~~g~g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~ 262 (485)
+......+.+++|+|++++.++.... .-..|+.+++.++..
T Consensus 222 ---------~~~p~~r~~~p~dvA~~v~~L~s~~~------~~itG~~i~vdGG~~ 262 (264)
T 3ucx_A 222 ---------AGSDLKRLPTEDEVASAILFMASDLA------SGITGQALDVNCGEY 262 (264)
T ss_dssp ---------TTSSSSSCCBHHHHHHHHHHHHSGGG------TTCCSCEEEESTTSS
T ss_pred ---------ccCCcccCCCHHHHHHHHHHHcCccc------cCCCCCEEEECCCcc
Confidence 22234568899999999998865322 226799999988754
|
| >3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.1e-21 Score=184.12 Aligned_cols=219 Identities=18% Similarity=0.169 Sum_probs=133.6
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhh-hcCCCeEEEEecCCCHHHHHHHhc-
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEA-LRSGRAHYVSFDLRHKAQVLQALQ- 82 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~l~~~~~- 82 (485)
.+++++|||||+|+||+++++.|+++| ++|.+++|....... ..... ....++.++.+|++|++++.++++
T Consensus 7 ~~~k~vlITGas~giG~~~a~~l~~~G-~~V~~~~r~~~~~~~------~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 79 (253)
T 3qiv_A 7 FENKVGIVTGSGGGIGQAYAEALAREG-AAVVVADINAEAAEA------VAKQIVADGGTAISVAVDVSDPESAKAMADR 79 (253)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHH------HHHHHHHTTCEEEEEECCTTSHHHHHHHHHH
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHCC-CEEEEEcCCHHHHHH------HHHHHHhcCCcEEEEEccCCCHHHHHHHHHH
Confidence 457899999999999999999999999 689999886542111 01111 113578899999999998888875
Q ss_pred ------CCCEEEEcCCCC----------CCCCchhhhHHHHHHHHHHHHHH----HHhcCCCEEEEecCccccccCCCCc
Q 047227 83 ------GAEVVFHMAAPN----------SSINNHKLHHSVNVEGTKNVIDA----CAELKVKRLIYTSSPSVVFDGVHGI 142 (485)
Q Consensus 83 ------~~d~Vih~aa~~----------~~~~~~~~~~~~nv~~t~~ll~a----~~~~~v~r~V~~SS~~vy~~~~~~~ 142 (485)
++|+|||+||.. .+.++++..+++|+.++.++.++ +++.+..++|++||...|.
T Consensus 80 ~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~------ 153 (253)
T 3qiv_A 80 TLAEFGGIDYLVNNAAIFGGMKLDFLLTIDPEYYKKFMSVNLDGALWCTRAVYKKMTKRGGGAIVNQSSTAAWL------ 153 (253)
T ss_dssp HHHHHSCCCEEEECCCCCCGGGGGCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC-----------
T ss_pred HHHHcCCCCEEEECCCcCCCCCCcccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCEEEEECCccccC------
Confidence 699999999952 13345677899999996665555 4555677999999987751
Q ss_pred CCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCCh-HHHHHHHHcCCCeEEecCCC
Q 047227 143 INGNEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLLV-PSLVAAARAGKSKFIIGDGN 218 (485)
Q Consensus 143 ~~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~~-~~~~~~~~~g~~~~~~g~g~ 218 (485)
+...|+.+|+..|.+.+.++.+ .++++.+++||.++++...... ..+...+.++ .
T Consensus 154 ------------~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~---------~ 212 (253)
T 3qiv_A 154 ------------YSNYYGLAKVGINGLTQQLSRELGGRNIRINAIAPGPIDTEANRTTTPKEMVDDIVKG---------L 212 (253)
T ss_dssp ------------------CCHHHHHHHHHHHHHHTTTTTEEEEEEEC---------------------------------
T ss_pred ------------CCchhHHHHHHHHHHHHHHHHHHhhcCeEEEEEEecCCcccchhhcCcHHHHHHHhcc---------C
Confidence 3356999999999998887654 4799999999999988543221 1122222222 2
Q ss_pred ceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCCCc
Q 047227 219 NVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMESI 263 (485)
Q Consensus 219 ~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~~ 263 (485)
....+..++|+|++++.++.... ....|+.|++.++..+
T Consensus 213 ~~~~~~~~~dva~~~~~l~s~~~------~~~tG~~~~vdgG~~~ 251 (253)
T 3qiv_A 213 PLSRMGTPDDLVGMCLFLLSDEA------SWITGQIFNVDGGQII 251 (253)
T ss_dssp -------CCHHHHHHHHHHSGGG------TTCCSCEEEC------
T ss_pred CCCCCCCHHHHHHHHHHHcCccc------cCCCCCEEEECCCeec
Confidence 23446678999999998865221 2257999999987654
|
| >3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.86 E-value=1.9e-20 Score=180.42 Aligned_cols=232 Identities=17% Similarity=0.098 Sum_probs=161.5
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccC------Cccchhhhhhhh--cCCCeEEEEecCCCHH
Q 047227 4 EENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALE------PHEEQGILGEAL--RSGRAHYVSFDLRHKA 75 (485)
Q Consensus 4 ~~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~------~~~~~~~~~~~~--~~~~v~~~~~Dl~d~~ 75 (485)
..++|++|||||+|+||+++++.|.++| ++|.+++|....... ..+........+ ...++.++.+|++|++
T Consensus 12 ~l~gk~~lVTGas~gIG~a~a~~la~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~ 90 (280)
T 3pgx_A 12 SLQGRVAFITGAARGQGRSHAVRLAAEG-ADIIACDICAPVSASVTYAPASPEDLDETARLVEDQGRKALTRVLDVRDDA 90 (280)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTTTCCEEEEECCTTCHH
T ss_pred ccCCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEEcCCCCHH
Confidence 4567899999999999999999999999 699999885321110 001100011111 1357889999999999
Q ss_pred HHHHHhc-------CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHHHh----cC-CCEEEEecCccccc
Q 047227 76 QVLQALQ-------GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDACAE----LK-VKRLIYTSSPSVVF 136 (485)
Q Consensus 76 ~l~~~~~-------~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~~~----~~-v~r~V~~SS~~vy~ 136 (485)
++.++++ +.|++||+||... +.++++..+++|+.++.++.+++.. .+ ..++|++||...+.
T Consensus 91 ~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~ 170 (280)
T 3pgx_A 91 ALRELVADGMEQFGRLDVVVANAGVLSWGRVWELTDEQWDTVIGVNLTGTWRTLRATVPAMIEAGNGGSIVVVSSSAGLK 170 (280)
T ss_dssp HHHHHHHHHHHHHCCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECCGGGTS
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCEEEEEcchhhcc
Confidence 8888775 6899999999432 3345677899999999999988743 33 46899999987753
Q ss_pred cCCCCcCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCChHHHHHHHHcCC----
Q 047227 137 DGVHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGK---- 209 (485)
Q Consensus 137 ~~~~~~~~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~---- 209 (485)
+......|+.+|...+.+.+.++.+ +|+++.+++||.++++..... ..........
T Consensus 171 ---------------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~--~~~~~~~~~~~~~~ 233 (280)
T 3pgx_A 171 ---------------ATPGNGHYSASKHGLTALTNTLAIELGEYGIRVNSIHPYSVETPMIEPE--AMMEIFARHPSFVH 233 (280)
T ss_dssp ---------------CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSTTCCHH--HHHHHHHHCGGGGG
T ss_pred ---------------CCCCchhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcccCcccchh--hhhhhhhcCchhhh
Confidence 2345678999999999998887654 689999999999999864421 1111111110
Q ss_pred CeEEecCCCceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCC
Q 047227 210 SKFIIGDGNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNME 261 (485)
Q Consensus 210 ~~~~~g~g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~ 261 (485)
..... ..... .+.+++|+|++++.++.... .-..|+.+++.++.
T Consensus 234 ~~~~~-~~~~~-r~~~p~dvA~~v~~L~s~~~------~~itG~~i~vdGG~ 277 (280)
T 3pgx_A 234 SFPPM-PVQPN-GFMTADEVADVVAWLAGDGS------GTLTGTQIPVDKGA 277 (280)
T ss_dssp GSCCB-TTBCS-SCBCHHHHHHHHHHHHSGGG------TTCSSCEEEESTTG
T ss_pred hhhhc-ccCCC-CCCCHHHHHHHHHHHhCccc------cCCCCCEEEECCCc
Confidence 00011 11222 48999999999998865221 22678999998763
|
| >2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.9e-21 Score=187.01 Aligned_cols=228 Identities=14% Similarity=0.032 Sum_probs=158.0
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhh--cCCCeEEEEecCCCHHHHHHHhc
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEAL--RSGRAHYVSFDLRHKAQVLQALQ 82 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~Dl~d~~~l~~~~~ 82 (485)
.++|++|||||+|+||+++++.|+++| ++|++++|....... ....+ ...++.++.+|++|++++.++++
T Consensus 20 l~~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~-------~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~~ 91 (277)
T 2rhc_B 20 QDSEVALVTGATSGIGLEIARRLGKEG-LRVFVCARGEEGLRT-------TLKELREAGVEADGRTCDVRSVPEIEALVA 91 (277)
T ss_dssp TTSCEEEEETCSSHHHHHHHHHHHHTT-CEEEEEESCHHHHHH-------HHHHHHHTTCCEEEEECCTTCHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHH-------HHHHHHhcCCceEEEECCCCCHHHHHHHHH
Confidence 346799999999999999999999999 699999887532110 11111 13568899999999998887775
Q ss_pred -------CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHHHhc------CCCEEEEecCccccccCCCCc
Q 047227 83 -------GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDACAEL------KVKRLIYTSSPSVVFDGVHGI 142 (485)
Q Consensus 83 -------~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~~~~------~v~r~V~~SS~~vy~~~~~~~ 142 (485)
++|+|||+||... ..++++..+++|+.++.++.+++... +.+++|++||...+.
T Consensus 92 ~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~m~~~~~g~iv~isS~~~~~------ 165 (277)
T 2rhc_B 92 AVVERYGPVDVLVNNAGRPGGGATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLERGTGRIVNIASTGGKQ------ 165 (277)
T ss_dssp HHHHHTCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTTCHHHHTEEEEEEECCGGGTS------
T ss_pred HHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHhChhhHhhcCCeEEEEECcccccc------
Confidence 5899999999422 22345778999999999999997664 567999999987652
Q ss_pred CCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhC---CCCceEEEEecCCcccCCCCCChHHHHHHHHc--CCCeEEecCC
Q 047227 143 INGNEALPYPPKHNDFYSATKAEGEALVIKANG---TNGLLTCCIRPSSIFGPGDRLLVPSLVAAARA--GKSKFIIGDG 217 (485)
Q Consensus 143 ~~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~---~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~--g~~~~~~g~g 217 (485)
+..+...|+.+|...|.+.+.++. ..|++++++|||.+.++........+...... ..........
T Consensus 166 ---------~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (277)
T 2rhc_B 166 ---------GVVHAAPYSASKHGVVGFTKALGLELARTGITVNAVCPGFVETPMAASVREHYSDIWEVSTEEAFDRITAR 236 (277)
T ss_dssp ---------CCTTCHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEEECSBCSHHHHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred ---------CCCCCccHHHHHHHHHHHHHHHHHHHHHhCcEEEEEecCcCcCchhhhhhhhcccccccchHHHHHHHHhc
Confidence 123457899999999999887764 35899999999999876321111000000000 0000000011
Q ss_pred CceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCC
Q 047227 218 NNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNME 261 (485)
Q Consensus 218 ~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~ 261 (485)
.....+++++|+|++++.++.... ....|+.+++.++.
T Consensus 237 ~p~~r~~~~~dvA~~v~~l~s~~~------~~~tG~~~~vdGG~ 274 (277)
T 2rhc_B 237 VPIGRYVQPSEVAEMVAYLIGPGA------AAVTAQALNVCGGL 274 (277)
T ss_dssp STTSSCBCHHHHHHHHHHHHSGGG------TTCCSCEEEESTTC
T ss_pred CCCCCCcCHHHHHHHHHHHhCchh------cCCCCcEEEECCCc
Confidence 123458899999999998865221 12578999998763
|
| >1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=6.9e-21 Score=181.94 Aligned_cols=222 Identities=15% Similarity=0.079 Sum_probs=160.6
Q ss_pred CCCCCEEEEEcCC--CchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhh-cCCCeEEEEecCCCHHHHHHH
Q 047227 4 EENERLCVVTGGR--GFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEAL-RSGRAHYVSFDLRHKAQVLQA 80 (485)
Q Consensus 4 ~~~~~~iLVtGgt--G~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~ 80 (485)
..++|++|||||+ |+||+++++.|.++| ++|++++|... ..+. ..... ..++..++.+|++|++++.++
T Consensus 6 ~l~~k~vlVTGas~~~gIG~~ia~~l~~~G-~~V~~~~r~~~----~~~~---~~~l~~~~~~~~~~~~D~~~~~~v~~~ 77 (265)
T 1qsg_A 6 FLSGKRILVTGVASKLSIAYGIAQAMHREG-AELAFTYQNDK----LKGR---VEEFAAQLGSDIVLQCDVAEDASIDTM 77 (265)
T ss_dssp TTTTCEEEECCCCSTTSHHHHHHHHHHHTT-CEEEEEESSTT----THHH---HHHHHHHTTCCCEEECCTTCHHHHHHH
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHHCC-CEEEEEcCcHH----HHHH---HHHHHHhcCCcEEEEccCCCHHHHHHH
Confidence 3556899999999 999999999999999 68999988641 1111 11111 113457899999999988887
Q ss_pred hc-------CCCEEEEcCCCC------------CCCCchhhhHHHHHHHHHHHHHHHHhcC--CCEEEEecCccccccCC
Q 047227 81 LQ-------GAEVVFHMAAPN------------SSINNHKLHHSVNVEGTKNVIDACAELK--VKRLIYTSSPSVVFDGV 139 (485)
Q Consensus 81 ~~-------~~d~Vih~aa~~------------~~~~~~~~~~~~nv~~t~~ll~a~~~~~--v~r~V~~SS~~vy~~~~ 139 (485)
++ ++|+|||+||.. ...++++..+++|+.++.++.+++...- -.++|++||...+.
T Consensus 78 ~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~--- 154 (265)
T 1qsg_A 78 FAELGKVWPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAER--- 154 (265)
T ss_dssp HHHHHTTCSSEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGTS---
T ss_pred HHHHHHHcCCCCEEEECCCCCCccccCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEEcchhhcc---
Confidence 75 589999999943 2234567789999999999999998752 24899999977652
Q ss_pred CCcCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCC--ChHHHHHHHHcCCCeEEe
Q 047227 140 HGIINGNEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRL--LVPSLVAAARAGKSKFII 214 (485)
Q Consensus 140 ~~~~~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~--~~~~~~~~~~~g~~~~~~ 214 (485)
+..+...|+.+|...|.+.+.++.+ .|+++.+++||.++++.... ..+.+......+.+
T Consensus 155 ------------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~p---- 218 (265)
T 1qsg_A 155 ------------AIPNYNVMGLAKASLEANVRYMANAMGPEGVRVNAISAGPIRTLAASGIKDFRKMLAHCEAVTP---- 218 (265)
T ss_dssp ------------BCTTTTHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCCCCTTGGGSTTHHHHHHHHHHHST----
T ss_pred ------------CCCCchHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCCCccchhhcccccHHHHHHHHhcCC----
Confidence 1234568999999999999877643 58999999999999885432 12333333332222
Q ss_pred cCCCceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCCCc
Q 047227 215 GDGNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMESI 263 (485)
Q Consensus 215 g~g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~~ 263 (485)
...+.+++|+|++++.++.... ....|+.|++.++..+
T Consensus 219 -----~~~~~~~~dva~~v~~l~s~~~------~~~tG~~~~vdgG~~~ 256 (265)
T 1qsg_A 219 -----IRRTVTIEDVGNSAAFLCSDLS------AGISGEVVHVDGGFSI 256 (265)
T ss_dssp -----TSSCCCHHHHHHHHHHHTSGGG------TTCCSCEEEESTTGGG
T ss_pred -----CCCCCCHHHHHHHHHHHhCchh------cCccCCEEEECCCcCC
Confidence 1246789999999988864211 2256899999887543
|
| >1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.7e-20 Score=178.08 Aligned_cols=218 Identities=14% Similarity=0.098 Sum_probs=156.0
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc--
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ-- 82 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 82 (485)
.++|++|||||+|+||+++++.|+++| ++|++++|....... ....+ ..++.++.+|++|++++.++++
T Consensus 3 l~~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~-------~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~ 73 (254)
T 1hdc_A 3 LSGKTVIITGGARGLGAEAARQAVAAG-ARVVLADVLDEEGAA-------TAREL-GDAARYQHLDVTIEEDWQRVVAYA 73 (254)
T ss_dssp CCCSEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHH-------HHHTT-GGGEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHH-------HHHHh-CCceeEEEecCCCHHHHHHHHHHH
Confidence 457899999999999999999999999 689999886431100 11111 2468889999999998888876
Q ss_pred -----CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHH----HHHHHHHhcCCCEEEEecCccccccCCCCcCCCC
Q 047227 83 -----GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTK----NVIDACAELKVKRLIYTSSPSVVFDGVHGIINGN 146 (485)
Q Consensus 83 -----~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~----~ll~a~~~~~v~r~V~~SS~~vy~~~~~~~~~~~ 146 (485)
++|+|||+||... +.++++..+++|+.++. .++..+++.+.+++|++||...+.
T Consensus 74 ~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~---------- 143 (254)
T 1hdc_A 74 REEFGSVDGLVNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDAGGGSIVNISSAAGLM---------- 143 (254)
T ss_dssp HHHHSCCCEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS----------
T ss_pred HHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEECchhhcc----------
Confidence 6999999999432 22356778999999987 455556666778999999987763
Q ss_pred CCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCceeec
Q 047227 147 EALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDF 223 (485)
Q Consensus 147 e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~ 223 (485)
+..+...|+.+|...+.+.+.++.+ .|++++++|||.++++.. .. .. ...............+
T Consensus 144 -----~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~----~~----~~-~~~~~~~~~~~p~~~~ 209 (254)
T 1hdc_A 144 -----GLALTSSYGASKWGVRGLSKLAAVELGTDRIRVNSVHPGMTYTPMT----AE----TG-IRQGEGNYPNTPMGRV 209 (254)
T ss_dssp -----CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHH----HH----HT-CCCSTTSCTTSTTSSC
T ss_pred -----CCCCchhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEecccCcCccc----cc----cc-hhHHHHHHhcCCCCCC
Confidence 1235578999999999998887643 589999999999987631 11 11 1100000011122346
Q ss_pred c-cHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCC
Q 047227 224 T-YVANVAHAHICAERALASEVTVAEKAAGQAYFVTNME 261 (485)
Q Consensus 224 i-~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~ 261 (485)
. +++|+|++++.++.... ....|+.+++.++.
T Consensus 210 ~~~~~dvA~~v~~l~s~~~------~~~tG~~~~vdgG~ 242 (254)
T 1hdc_A 210 GNEPGEIAGAVVKLLSDTS------SYVTGAELAVDGGW 242 (254)
T ss_dssp B-CHHHHHHHHHHHHSGGG------TTCCSCEEEESTTT
T ss_pred CCCHHHHHHHHHHHhCchh------cCCCCCEEEECCCc
Confidence 7 99999999998865211 22678999998874
|
| >2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A | Back alignment and structure |
|---|
Probab=99.86 E-value=7.7e-21 Score=181.47 Aligned_cols=215 Identities=16% Similarity=0.097 Sum_probs=155.7
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc--
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ-- 82 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 82 (485)
.++|++|||||+|+||+++++.|+++| ++|++++|.... ..++.++.+|++|++++.++++
T Consensus 6 l~~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~----------------~~~~~~~~~Dl~~~~~v~~~~~~~ 68 (264)
T 2dtx_A 6 LRDKVVIVTGASMGIGRAIAERFVDEG-SKVIDLSIHDPG----------------EAKYDHIECDVTNPDQVKASIDHI 68 (264)
T ss_dssp GTTCEEEEESCSSHHHHHHHHHHHHTT-CEEEEEESSCCC----------------SCSSEEEECCTTCHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEecCccc----------------CCceEEEEecCCCHHHHHHHHHHH
Confidence 467899999999999999999999999 699999886531 2467889999999998888775
Q ss_pred -----CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHHHh----cCCCEEEEecCccccccCCCCcCCCC
Q 047227 83 -----GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDACAE----LKVKRLIYTSSPSVVFDGVHGIINGN 146 (485)
Q Consensus 83 -----~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~~~----~~v~r~V~~SS~~vy~~~~~~~~~~~ 146 (485)
++|+|||+||... ..++++..+++|+.++.++.+++.. .+.+++|++||...+.
T Consensus 69 ~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~---------- 138 (264)
T 2dtx_A 69 FKEYGSISVLVNNAGIESYGKIESMSMGEWRRIIDVNLFGYYYASKFAIPYMIRSRDPSIVNISSVQASI---------- 138 (264)
T ss_dssp HHHHSCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEECCGGGTS----------
T ss_pred HHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEECCchhcc----------
Confidence 6999999999322 2335678899999999888888764 3567999999987763
Q ss_pred CCCCCCCCCCchHHHHHHHHHHHHHHHhCCCC--ceEEEEecCCcccCCCCCChHHHHHHHHcCCC------eEEecCCC
Q 047227 147 EALPYPPKHNDFYSATKAEGEALVIKANGTNG--LLTCCIRPSSIFGPGDRLLVPSLVAAARAGKS------KFIIGDGN 218 (485)
Q Consensus 147 e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~g--~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~------~~~~g~g~ 218 (485)
+..+...|+.+|...|.+.+.++.+.+ +++++++||.+.++.. ..+......... .....+..
T Consensus 139 -----~~~~~~~Y~~sK~a~~~~~~~la~e~~~~i~vn~v~PG~v~t~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (264)
T 2dtx_A 139 -----ITKNASAYVTSKHAVIGLTKSIALDYAPLLRCNAVCPATIDTPLV----RKAAELEVGSDPMRIEKKISEWGHEH 209 (264)
T ss_dssp -----CCTTBHHHHHHHHHHHHHHHHHHHHHTTTSEEEEEEECSBCSHHH----HHHHHHHHCSCHHHHHHHHHHHHHHS
T ss_pred -----CCCCchhHHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCCCcCcch----hhhhhcccccCchhhHHHHHHHHhcC
Confidence 123567899999999999888764332 9999999999976521 111100000000 00000111
Q ss_pred ceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCC
Q 047227 219 NVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNME 261 (485)
Q Consensus 219 ~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~ 261 (485)
....+++++|+|++++.++.... ....|+.+++.++.
T Consensus 210 p~~~~~~p~dvA~~v~~l~s~~~------~~~tG~~i~vdGG~ 246 (264)
T 2dtx_A 210 PMQRIGKPQEVASAVAFLASREA------SFITGTCLYVDGGL 246 (264)
T ss_dssp TTSSCBCHHHHHHHHHHHHSGGG------TTCCSCEEEESTTG
T ss_pred CCCCCcCHHHHHHHHHHHhCchh------cCCCCcEEEECCCc
Confidence 23458899999999998865211 22678999998864
|
| >3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.4e-20 Score=178.88 Aligned_cols=223 Identities=14% Similarity=0.098 Sum_probs=162.1
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhh--cCCCeEEEEecCCCHHHHHHHh
Q 047227 4 EENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEAL--RSGRAHYVSFDLRHKAQVLQAL 81 (485)
Q Consensus 4 ~~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~Dl~d~~~l~~~~ 81 (485)
.+++|++|||||+|.||+++++.|.++| ++|.+++|....... ....+ ...++.++.+|++|++++.+++
T Consensus 3 ~l~~k~vlVTGas~gIG~aia~~l~~~G-~~V~~~~r~~~~~~~-------~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~ 74 (257)
T 3imf_A 3 AMKEKVVIITGGSSGMGKGMATRFAKEG-ARVVITGRTKEKLEE-------AKLEIEQFPGQILTVQMDVRNTDDIQKMI 74 (257)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHH-------HHHHHCCSTTCEEEEECCTTCHHHHHHHH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHH-------HHHHHHhcCCcEEEEEccCCCHHHHHHHH
Confidence 4567899999999999999999999999 689999887542111 11111 1357899999999999888877
Q ss_pred c-------CCCEEEEcCCCC-------CCCCchhhhHHHHHHHHHHHHHHH-----HhcCCCEEEEecCccccccCCCCc
Q 047227 82 Q-------GAEVVFHMAAPN-------SSINNHKLHHSVNVEGTKNVIDAC-----AELKVKRLIYTSSPSVVFDGVHGI 142 (485)
Q Consensus 82 ~-------~~d~Vih~aa~~-------~~~~~~~~~~~~nv~~t~~ll~a~-----~~~~v~r~V~~SS~~vy~~~~~~~ 142 (485)
+ +.|++||+||.. .+.++++..+++|+.++.++.+++ ++.+..++|++||...+.
T Consensus 75 ~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~------ 148 (257)
T 3imf_A 75 EQIDEKFGRIDILINNAAGNFICPAEDLSVNGWNSVINIVLNGTFYCSQAIGKYWIEKGIKGNIINMVATYAWD------ 148 (257)
T ss_dssp HHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEECCGGGGS------
T ss_pred HHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhCCCcEEEEECchhhcc------
Confidence 5 589999999932 123456778999999999999987 334467999999987652
Q ss_pred CCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhC----CCCceEEEEecCCcccCCCCCCh---HHHHHHHHcCCCeEEec
Q 047227 143 INGNEALPYPPKHNDFYSATKAEGEALVIKANG----TNGLLTCCIRPSSIFGPGDRLLV---PSLVAAARAGKSKFIIG 215 (485)
Q Consensus 143 ~~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~----~~g~~~~ilRp~~v~Gp~~~~~~---~~~~~~~~~g~~~~~~g 215 (485)
+..+...|+.+|+..+.+.+.++. .+|+++.+++||.+.++...... +.+.......
T Consensus 149 ---------~~~~~~~Y~asKaa~~~l~~~la~e~~~~~gIrvn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~------- 212 (257)
T 3imf_A 149 ---------AGPGVIHSAAAKAGVLAMTKTLAVEWGRKYGIRVNAIAPGPIERTGGADKLWISEEMAKRTIQS------- 212 (257)
T ss_dssp ---------CCTTCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCBSSCCCC-------CCSHHHHTT-------
T ss_pred ---------CCCCcHHHHHHHHHHHHHHHHHHHHhccccCeEEEEEEECCCcCCcchhhcccCHHHHHHHHhc-------
Confidence 123567899999999999887764 34899999999999988543211 1111111111
Q ss_pred CCCceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCCCcc
Q 047227 216 DGNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMESIK 264 (485)
Q Consensus 216 ~g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~~t 264 (485)
.....+..++|+|++++.++.... .-..|+.+++.++..++
T Consensus 213 --~p~~r~~~pedvA~~v~~L~s~~~------~~itG~~i~vdGG~~~~ 253 (257)
T 3imf_A 213 --VPLGRLGTPEEIAGLAYYLCSDEA------AYINGTCMTMDGGQHLH 253 (257)
T ss_dssp --STTCSCBCHHHHHHHHHHHHSGGG------TTCCSCEEEESTTTTSC
T ss_pred --CCCCCCcCHHHHHHHHHHHcCchh------cCccCCEEEECCCcccC
Confidence 123457889999999998865321 22679999999886554
|
| >1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.86 E-value=1.5e-20 Score=180.42 Aligned_cols=220 Identities=13% Similarity=0.034 Sum_probs=155.4
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhh-cCCCeEEEEecCCCHHHHHHHh--
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEAL-RSGRAHYVSFDLRHKAQVLQAL-- 81 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~-- 81 (485)
.++|++|||||+|+||+++++.|+++| ++|++++|....... ...... ...++.++.+|++|++++.+++
T Consensus 19 l~~k~vlVTGas~gIG~aia~~l~~~G-~~V~~~~r~~~~~~~------~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 91 (273)
T 1ae1_A 19 LKGTTALVTGGSKGIGYAIVEELAGLG-ARVYTCSRNEKELDE------CLEIWREKGLNVEGSVCDLLSRTERDKLMQT 91 (273)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTT-CEEEEEESCHHHHHH------HHHHHHHTTCCEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCEEEEECCcchHHHHHHHHHHHCC-CEEEEEeCCHHHHHH------HHHHHHhcCCceEEEECCCCCHHHHHHHHHH
Confidence 346899999999999999999999999 689999887532110 011111 1357889999999999888776
Q ss_pred ------cCCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHHH----hcCCCEEEEecCccccccCCCCcCC
Q 047227 82 ------QGAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDACA----ELKVKRLIYTSSPSVVFDGVHGIIN 144 (485)
Q Consensus 82 ------~~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~~----~~~v~r~V~~SS~~vy~~~~~~~~~ 144 (485)
.+.|++||+||... ..++++..+++|+.++.++.+++. +.+.+++|++||...+..
T Consensus 92 ~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~------- 164 (273)
T 1ae1_A 92 VAHVFDGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKASQNGNVIFLSSIAGFSA------- 164 (273)
T ss_dssp HHHHTTSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSEEEEEECCGGGTSC-------
T ss_pred HHHHcCCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcCHhhcCC-------
Confidence 35899999999321 233567788999999999999874 456679999999887631
Q ss_pred CCCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCChH------HHHHHHHcCCCeEEec
Q 047227 145 GNEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLLVP------SLVAAARAGKSKFIIG 215 (485)
Q Consensus 145 ~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~~~------~~~~~~~~g~~~~~~g 215 (485)
..+...|+.+|...+.+.+.++.+ .|+++++++||.++++....... ..........
T Consensus 165 --------~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~------ 230 (273)
T 1ae1_A 165 --------LPSVSLYSASKGAINQMTKSLACEWAKDNIRVNSVAPGVILTPLVETAIKKNPHQKEEIDNFIVKT------ 230 (273)
T ss_dssp --------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBC-------------CHHHHHHHHHHS------
T ss_pred --------CCCcchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeCCCcCchhhhhhhcccCcHHHHHHHHhcC------
Confidence 234578999999999998887643 48999999999999885332111 1122221111
Q ss_pred CCCceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCC
Q 047227 216 DGNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNME 261 (485)
Q Consensus 216 ~g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~ 261 (485)
....+.+++|+|++++.++... ..-..|+.+++.++.
T Consensus 231 ---p~~r~~~p~dvA~~v~~l~s~~------~~~~tG~~i~vdGG~ 267 (273)
T 1ae1_A 231 ---PMGRAGKPQEVSALIAFLCFPA------ASYITGQIIWADGGF 267 (273)
T ss_dssp ---TTCSCBCHHHHHHHHHHHHSGG------GTTCCSCEEEESTTG
T ss_pred ---CCCCCcCHHHHHHHHHHHhCcc------ccCcCCCEEEECCCc
Confidence 1234788999999998876421 122578999998874
|
| >1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1e-20 Score=180.21 Aligned_cols=228 Identities=13% Similarity=0.126 Sum_probs=154.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhc---CCCeEEEEecCCCHHHHHHHhc
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALR---SGRAHYVSFDLRHKAQVLQALQ 82 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~Dl~d~~~l~~~~~ 82 (485)
++|++|||||+|+||+++++.|.++| ++|++++|...... +. ....+. ..++.++.+|++|++++.++++
T Consensus 3 ~~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~---~~---~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~ 75 (260)
T 1x1t_A 3 KGKVAVVTGSTSGIGLGIATALAAQG-ADIVLNGFGDAAEI---EK---VRAGLAAQHGVKVLYDGADLSKGEAVRGLVD 75 (260)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTT-CEEEEECCSCHHHH---HH---HHHHHHHHHTSCEEEECCCTTSHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHcC-CEEEEEeCCcchHH---HH---HHHHHHhccCCcEEEEECCCCCHHHHHHHHH
Confidence 46899999999999999999999999 68999888653200 00 111111 3568899999999998888775
Q ss_pred -------CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHHH----hcCCCEEEEecCccccccCCCCcCC
Q 047227 83 -------GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDACA----ELKVKRLIYTSSPSVVFDGVHGIIN 144 (485)
Q Consensus 83 -------~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~~----~~~v~r~V~~SS~~vy~~~~~~~~~ 144 (485)
++|++||+||... ..++++..+++|+.++.++.+++. +.+.+++|++||...+.
T Consensus 76 ~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~-------- 147 (260)
T 1x1t_A 76 NAVRQMGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQGFGRIINIASAHGLV-------- 147 (260)
T ss_dssp HHHHHHSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS--------
T ss_pred HHHHhcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECcHHhCc--------
Confidence 6999999999332 233567789999999999888875 34667999999987763
Q ss_pred CCCCCCCCCCCCchHHHHHHHHHHHHHHHhC---CCCceEEEEecCCcccCCCCCChHHHHHHH-Hc-CCCeEEe-cCCC
Q 047227 145 GNEALPYPPKHNDFYSATKAEGEALVIKANG---TNGLLTCCIRPSSIFGPGDRLLVPSLVAAA-RA-GKSKFII-GDGN 218 (485)
Q Consensus 145 ~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~---~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~-~~-g~~~~~~-g~g~ 218 (485)
+..+...|+.+|...|.+.+.++. ..|+++++++||.+.++............. .. ....... ....
T Consensus 148 -------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (260)
T 1x1t_A 148 -------ASANKSAYVAAKHGVVGFTKVTALETAGQGITANAICPGWVRTPLVEKQISALAEKNGVDQETAARELLSEKQ 220 (260)
T ss_dssp -------CCTTCHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCC------------------------CHHHHC
T ss_pred -------CCCCCchHHHHHHHHHHHHHHHHHHhccCCEEEEEEeecCccCchHHHhhhhhccccCCchHHHHHHHhhccC
Confidence 123567899999999999887654 358999999999999875332211110000 00 0000000 0111
Q ss_pred ceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCC
Q 047227 219 NVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNME 261 (485)
Q Consensus 219 ~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~ 261 (485)
....+.+++|+|++++.++... .....|+.+++.++.
T Consensus 221 p~~~~~~p~dva~~~~~l~s~~------~~~~tG~~~~vdgG~ 257 (260)
T 1x1t_A 221 PSLQFVTPEQLGGTAVFLASDA------AAQITGTTVSVDGGW 257 (260)
T ss_dssp TTCCCBCHHHHHHHHHHHHSGG------GTTCCSCEEEESTTG
T ss_pred CCCCCcCHHHHHHHHHHHhChh------hcCCCCCEEEECCCc
Confidence 2345889999999999886521 122678999998764
|
| >3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E | Back alignment and structure |
|---|
Probab=99.86 E-value=1.3e-20 Score=178.24 Aligned_cols=218 Identities=15% Similarity=0.103 Sum_probs=162.0
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc--
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ-- 82 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 82 (485)
.++|++|||||+|+||+++++.|.++| ++|.+++|....... ....+ ..+...+.+|++|++++.++++
T Consensus 7 l~gk~~lVTGas~gIG~a~a~~l~~~G-~~V~~~~r~~~~~~~-------~~~~~-~~~~~~~~~Dv~d~~~v~~~~~~~ 77 (248)
T 3op4_A 7 LEGKVALVTGASRGIGKAIAELLAERG-AKVIGTATSESGAQA-------ISDYL-GDNGKGMALNVTNPESIEAVLKAI 77 (248)
T ss_dssp CTTCEEEESSCSSHHHHHHHHHHHHTT-CEEEEEESSHHHHHH-------HHHHH-GGGEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHH-------HHHHh-cccceEEEEeCCCHHHHHHHHHHH
Confidence 457899999999999999999999999 689999886432110 11111 2357889999999998888876
Q ss_pred -----CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHHHh----cCCCEEEEecCccccccCCCCcCCCC
Q 047227 83 -----GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDACAE----LKVKRLIYTSSPSVVFDGVHGIINGN 146 (485)
Q Consensus 83 -----~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~~~----~~v~r~V~~SS~~vy~~~~~~~~~~~ 146 (485)
+.|++||+||... +.++++..+++|+.++.++.+++.. .+..++|++||...+.
T Consensus 78 ~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~---------- 147 (248)
T 3op4_A 78 TDEFGGVDILVNNAGITRDNLLMRMKEEEWSDIMETNLTSIFRLSKAVLRGMMKKRQGRIINVGSVVGTM---------- 147 (248)
T ss_dssp HHHHCCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHH----------
T ss_pred HHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEEcchhhcC----------
Confidence 6999999999322 3346677899999999999988754 4567999999977663
Q ss_pred CCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCceeec
Q 047227 147 EALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDF 223 (485)
Q Consensus 147 e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~ 223 (485)
+..+...|+.+|...+.+.+.++.+ .|+++.+++||.+..+......+.......... ....+
T Consensus 148 -----~~~~~~~Y~asK~a~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~---------p~~r~ 213 (248)
T 3op4_A 148 -----GNAGQANYAAAKAGVIGFTKSMAREVASRGVTVNTVAPGFIETDMTKALNDEQRTATLAQV---------PAGRL 213 (248)
T ss_dssp -----CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSTTTTTSCHHHHHHHHHTC---------TTCSC
T ss_pred -----CCCCChHHHHHHHHHHHHHHHHHHHHHHhCeEEEEEeeCCCCCchhhhcCHHHHHHHHhcC---------CCCCC
Confidence 2345678999999999888877643 589999999999988765433333333333322 22457
Q ss_pred ccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCC
Q 047227 224 TYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNME 261 (485)
Q Consensus 224 i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~ 261 (485)
.+++|+|++++.++.... .-..|+.+++.++.
T Consensus 214 ~~p~dva~~v~~L~s~~~------~~itG~~i~vdgG~ 245 (248)
T 3op4_A 214 GDPREIASAVAFLASPEA------AYITGETLHVNGGM 245 (248)
T ss_dssp BCHHHHHHHHHHHHSGGG------TTCCSCEEEESTTS
T ss_pred cCHHHHHHHHHHHcCCcc------CCccCcEEEECCCe
Confidence 889999999988765211 22679999998764
|
| >4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.86 E-value=6.3e-21 Score=183.66 Aligned_cols=227 Identities=16% Similarity=0.130 Sum_probs=151.5
Q ss_pred CCCCCCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhh-hcCCCeEEEEecCCCHHHHHH
Q 047227 1 MSGEENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEA-LRSGRAHYVSFDLRHKAQVLQ 79 (485)
Q Consensus 1 M~~~~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~l~~ 79 (485)
|+...+++++|||||+|+||+++++.|+++| ++|.++++....... + ..... ....++.++.+|++|++++.+
T Consensus 23 mm~~~~~k~~lVTGas~GIG~aia~~la~~G-~~V~~~~~~~~~~~~---~--~~~~~~~~~~~~~~~~~Dv~d~~~v~~ 96 (280)
T 4da9_A 23 MMTQKARPVAIVTGGRRGIGLGIARALAASG-FDIAITGIGDAEGVA---P--VIAELSGLGARVIFLRADLADLSSHQA 96 (280)
T ss_dssp CCSCCCCCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCCHHHHH---H--HHHHHHHTTCCEEEEECCTTSGGGHHH
T ss_pred hhhccCCCEEEEecCCCHHHHHHHHHHHHCC-CeEEEEeCCCHHHHH---H--HHHHHHhcCCcEEEEEecCCCHHHHHH
Confidence 3444567899999999999999999999999 689988864321110 0 01111 124578999999999988777
Q ss_pred Hhc-------CCCEEEEcCCCC--C-------CCCchhhhHHHHHHHHHHHHHHHHhc----C---CCEEEEecCccccc
Q 047227 80 ALQ-------GAEVVFHMAAPN--S-------SINNHKLHHSVNVEGTKNVIDACAEL----K---VKRLIYTSSPSVVF 136 (485)
Q Consensus 80 ~~~-------~~d~Vih~aa~~--~-------~~~~~~~~~~~nv~~t~~ll~a~~~~----~---v~r~V~~SS~~vy~ 136 (485)
+++ +.|++||+||.. . +.++++..+++|+.++.++.+++... + ..++|++||...+.
T Consensus 97 ~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~g~Iv~isS~~~~~ 176 (280)
T 4da9_A 97 TVDAVVAEFGRIDCLVNNAGIASIVRDDFLDLKPENFDTIVGVNLRGTVFFTQAVLKAMLASDARASRSIINITSVSAVM 176 (280)
T ss_dssp HHHHHHHHHSCCCEEEEECC------CCGGGCCHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCC----
T ss_pred HHHHHHHHcCCCCEEEECCCccccCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCCCCCCEEEEEcchhhcc
Confidence 765 699999999952 1 33466778999999999988887643 2 45899999987753
Q ss_pred cCCCCcCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEE
Q 047227 137 DGVHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFI 213 (485)
Q Consensus 137 ~~~~~~~~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~ 213 (485)
+..+...|+.+|...+.+.+.++.+ .|+++.+++||.+..+......+........
T Consensus 177 ---------------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~------ 235 (280)
T 4da9_A 177 ---------------TSPERLDYCMSKAGLAAFSQGLALRLAETGIAVFEVRPGIIRSDMTAAVSGKYDGLIES------ 235 (280)
T ss_dssp ------------------CCHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCC----------------------
T ss_pred ---------------CCCCccHHHHHHHHHHHHHHHHHHHHHHhCcEEEEEeecCCcCCchhhcchhHHHHHhh------
Confidence 1234578999999999998877643 6899999999999887543221111111111
Q ss_pred ecCCCceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCCC
Q 047227 214 IGDGNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMES 262 (485)
Q Consensus 214 ~g~g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~ 262 (485)
.......+..++|+|++++.++.... .-..|+.+++.++..
T Consensus 236 --~~~p~~r~~~pedvA~~v~~L~s~~~------~~itG~~i~vdGG~~ 276 (280)
T 4da9_A 236 --GLVPMRRWGEPEDIGNIVAGLAGGQF------GFATGSVIQADGGLS 276 (280)
T ss_dssp --------CCBCHHHHHHHHHHHHTSTT------GGGTTCEEEESTTCC
T ss_pred --cCCCcCCcCCHHHHHHHHHHHhCccc------cCCCCCEEEECCCcc
Confidence 01233457889999999998865221 226799999988753
|
| >3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.3e-20 Score=179.94 Aligned_cols=212 Identities=19% Similarity=0.102 Sum_probs=157.3
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc--
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ-- 82 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 82 (485)
.++|++|||||+|+||+++++.|.++| ++|.+.+|..... .....+.+|++|.+++.++++
T Consensus 26 l~gk~vlVTGas~gIG~aia~~la~~G-~~V~~~~r~~~~~----------------~~~~~~~~Dv~~~~~~~~~~~~~ 88 (266)
T 3uxy_A 26 FEGKVALVTGAAGGIGGAVVTALRAAG-ARVAVADRAVAGI----------------AADLHLPGDLREAAYADGLPGAV 88 (266)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHTT-CEEEECSSCCTTS----------------CCSEECCCCTTSHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCCHHHH----------------HhhhccCcCCCCHHHHHHHHHHH
Confidence 456899999999999999999999999 6999998864311 112345789999988776664
Q ss_pred -----CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHH----HhcCCCEEEEecCccccccCCCCcCCCC
Q 047227 83 -----GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDAC----AELKVKRLIYTSSPSVVFDGVHGIINGN 146 (485)
Q Consensus 83 -----~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~----~~~~v~r~V~~SS~~vy~~~~~~~~~~~ 146 (485)
+.|++||+||... ..++++..+++|+.++.++.+++ ++.+..++|++||...+.
T Consensus 89 ~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~---------- 158 (266)
T 3uxy_A 89 AAGLGRLDIVVNNAGVISRGRITETTDADWSLSLGVNVEAPFRICRAAIPLMAAAGGGAIVNVASCWGLR---------- 158 (266)
T ss_dssp HHHHSCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCSBTTB----------
T ss_pred HHhcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECCHHhCC----------
Confidence 6999999999432 33456778899999999999998 556677999999987763
Q ss_pred CCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCC-------ChHHHHHHHHcCCCeEEecC
Q 047227 147 EALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRL-------LVPSLVAAARAGKSKFIIGD 216 (485)
Q Consensus 147 e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~-------~~~~~~~~~~~g~~~~~~g~ 216 (485)
+..+...|+.+|...|.+.+.++.+ .|+++.+++||.+.++.... .......... .
T Consensus 159 -----~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~---------~ 224 (266)
T 3uxy_A 159 -----PGPGHALYCLTKAALASLTQCMGMDHAPQGIRINAVCPNEVNTPMLRTGFAKRGFDPDRAVAELG---------R 224 (266)
T ss_dssp -----CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCCHHHHHHHHHTTCCHHHHHHHHH---------T
T ss_pred -----CCCCChHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEeeCCCcchHhhhhhhcccccchHHHHHHH---------h
Confidence 2345678999999999998887654 48999999999998763110 0111112222 2
Q ss_pred CCceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCCCc
Q 047227 217 GNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMESI 263 (485)
Q Consensus 217 g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~~ 263 (485)
......+.+++|+|++++.++.... .-..|+.+++.++..+
T Consensus 225 ~~p~~r~~~pedvA~~v~~L~s~~~------~~itG~~i~vdGG~~~ 265 (266)
T 3uxy_A 225 TVPLGRIAEPEDIADVVLFLASDAA------RYLCGSLVEVNGGKAV 265 (266)
T ss_dssp TSTTSSCBCHHHHHHHHHHHHSGGG------TTCCSCEEEESTTCCC
T ss_pred cCCCCCCcCHHHHHHHHHHHhCchh------cCCcCCEEEECcCEeC
Confidence 2234568899999999998865322 2267999999887654
|
| >4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=7.7e-21 Score=181.95 Aligned_cols=220 Identities=19% Similarity=0.125 Sum_probs=161.1
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhh--cCCCeEEEEecCCCHHHHHHHhc
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEAL--RSGRAHYVSFDLRHKAQVLQALQ 82 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~Dl~d~~~l~~~~~ 82 (485)
.++|++|||||+|+||+++++.|.++| ++|.+.++....... + ....+ ...++.++.+|++|++++.++++
T Consensus 26 l~~k~vlVTGas~gIG~aia~~la~~G-~~V~~~~~~~~~~~~---~---~~~~~~~~~~~~~~~~~D~~d~~~v~~~~~ 98 (269)
T 4dmm_A 26 LTDRIALVTGASRGIGRAIALELAAAG-AKVAVNYASSAGAAD---E---VVAAIAAAGGEAFAVKADVSQESEVEALFA 98 (269)
T ss_dssp TTTCEEEETTCSSHHHHHHHHHHHHTT-CEEEEEESSCHHHHH---H---HHHHHHHTTCCEEEEECCTTSHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEeCCChHHHH---H---HHHHHHhcCCcEEEEECCCCCHHHHHHHHH
Confidence 457899999999999999999999999 688888774321110 0 11111 13578899999999998888775
Q ss_pred -------CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHHH----hcCCCEEEEecCccccccCCCCcCC
Q 047227 83 -------GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDACA----ELKVKRLIYTSSPSVVFDGVHGIIN 144 (485)
Q Consensus 83 -------~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~~----~~~v~r~V~~SS~~vy~~~~~~~~~ 144 (485)
+.|++||+||... +.++++..+++|+.++.++.+++. +.+..++|++||...+.
T Consensus 99 ~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~-------- 170 (269)
T 4dmm_A 99 AVIERWGRLDVLVNNAGITRDTLLLRMKRDDWQSVLDLNLGGVFLCSRAAAKIMLKQRSGRIINIASVVGEM-------- 170 (269)
T ss_dssp HHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCHHHHH--------
T ss_pred HHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECchhhcC--------
Confidence 6899999999432 234667789999999999988874 44567999999987763
Q ss_pred CCCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCcee
Q 047227 145 GNEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVY 221 (485)
Q Consensus 145 ~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~~ 221 (485)
+..+...|+.+|...+.+.+.++.+ .|+++.+++||.+.++....... ....... ...
T Consensus 171 -------~~~~~~~Y~asK~a~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~---~~~~~~~---------p~~ 231 (269)
T 4dmm_A 171 -------GNPGQANYSAAKAGVIGLTKTVAKELASRGITVNAVAPGFIATDMTSELAA---EKLLEVI---------PLG 231 (269)
T ss_dssp -------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBTTSCSCHHHH---HHHGGGC---------TTS
T ss_pred -------CCCCchhHHHHHHHHHHHHHHHHHHHhhhCcEEEEEEECCCcCcccccccH---HHHHhcC---------CCC
Confidence 1235678999999999888877653 58999999999999876442211 2222221 234
Q ss_pred ecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCCCc
Q 047227 222 DFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMESI 263 (485)
Q Consensus 222 ~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~~ 263 (485)
.+.+++|+|++++.++.... ..-..|+.+++.+|..+
T Consensus 232 r~~~~~dvA~~v~~l~s~~~-----~~~itG~~i~vdGG~~~ 268 (269)
T 4dmm_A 232 RYGEAAEVAGVVRFLAADPA-----AAYITGQVINIDGGLVM 268 (269)
T ss_dssp SCBCHHHHHHHHHHHHHCGG-----GGGCCSCEEEESTTSCC
T ss_pred CCCCHHHHHHHHHHHhCCcc-----cCCCcCCEEEECCCeec
Confidence 57789999999998876311 12267999999887554
|
| >3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.6e-20 Score=178.87 Aligned_cols=215 Identities=16% Similarity=0.065 Sum_probs=153.7
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc--
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ-- 82 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 82 (485)
.++|++|||||+|+||+++++.|+++| ++|.+++|..... ...+...++.++.+|++|++++.++++
T Consensus 25 l~~k~vlVTGas~gIG~aia~~l~~~G-~~V~~~~r~~~~~----------~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~ 93 (260)
T 3gem_A 25 LSSAPILITGASQRVGLHCALRLLEHG-HRVIISYRTEHAS----------VTELRQAGAVALYGDFSCETGIMAFIDLL 93 (260)
T ss_dssp --CCCEEESSTTSHHHHHHHHHHHHTT-CCEEEEESSCCHH----------HHHHHHHTCEEEECCTTSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEeCChHHH----------HHHHHhcCCeEEECCCCCHHHHHHHHHHH
Confidence 346789999999999999999999999 6899999875421 111222358899999999998888775
Q ss_pred -----CCCEEEEcCCCCC------CCCchhhhHHHHHHHHHHHHHHHHh----cCCCEEEEecCccccccCCCCcCCCCC
Q 047227 83 -----GAEVVFHMAAPNS------SINNHKLHHSVNVEGTKNVIDACAE----LKVKRLIYTSSPSVVFDGVHGIINGNE 147 (485)
Q Consensus 83 -----~~d~Vih~aa~~~------~~~~~~~~~~~nv~~t~~ll~a~~~----~~v~r~V~~SS~~vy~~~~~~~~~~~e 147 (485)
+.|+|||+||... ..++++..+++|+.++.++.+++.. .+..++|++||...+.
T Consensus 94 ~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~----------- 162 (260)
T 3gem_A 94 KTQTSSLRAVVHNASEWLAETPGEEADNFTRMFSVHMLAPYLINLHCEPLLTASEVADIVHISDDVTRK----------- 162 (260)
T ss_dssp HHHCSCCSEEEECCCCCCCCCTTCHHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGGT-----------
T ss_pred HHhcCCCCEEEECCCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEECChhhcC-----------
Confidence 5899999999322 1124456899999999999888754 4567999999987763
Q ss_pred CCCCCCCCCchHHHHHHHHHHHHHHHhCCC--CceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCceeeccc
Q 047227 148 ALPYPPKHNDFYSATKAEGEALVIKANGTN--GLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFTY 225 (485)
Q Consensus 148 ~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~--g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~ 225 (485)
+..+...|+.+|+..+.+.+.++.+. ++++.+++||.+..+.... ..+........ ....+..
T Consensus 163 ----~~~~~~~Y~asKaa~~~l~~~la~e~~~~Irvn~v~PG~v~t~~~~~--~~~~~~~~~~~---------p~~r~~~ 227 (260)
T 3gem_A 163 ----GSSKHIAYCATKAGLESLTLSFAARFAPLVKVNGIAPALLMFQPKDD--AAYRANALAKS---------ALGIEPG 227 (260)
T ss_dssp ----CCSSCHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECTTCC-----------------C---------CSCCCCC
T ss_pred ----CCCCcHhHHHHHHHHHHHHHHHHHHHCCCCEEEEEeecccccCCCCC--HHHHHHHHhcC---------CCCCCCC
Confidence 12456789999999999988776542 5999999999998764221 11111111111 2233566
Q ss_pred HHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCCCcc
Q 047227 226 VANVAHAHICAERALASEVTVAEKAAGQAYFVTNMESIK 264 (485)
Q Consensus 226 v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~~t 264 (485)
++|+|++++.+++ .....|+.+++.++..++
T Consensus 228 ~edva~~v~~L~~--------~~~itG~~i~vdGG~~~~ 258 (260)
T 3gem_A 228 AEVIYQSLRYLLD--------STYVTGTTLTVNGGRHVK 258 (260)
T ss_dssp THHHHHHHHHHHH--------CSSCCSCEEEESTTTTTC
T ss_pred HHHHHHHHHHHhh--------CCCCCCCEEEECCCcccC
Confidence 8999999998874 234779999999886554
|
| >3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=7.5e-21 Score=184.18 Aligned_cols=221 Identities=15% Similarity=0.088 Sum_probs=162.2
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhh--cCCCeEEEEecCCCHHHHHHHhc
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEAL--RSGRAHYVSFDLRHKAQVLQALQ 82 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~Dl~d~~~l~~~~~ 82 (485)
.++|++|||||+|+||+++++.|+++| ++|.+++|....... ...... ...++.++.+|++|++++.++++
T Consensus 45 l~gk~vlVTGas~GIG~aia~~la~~G-~~V~~~~r~~~~~~~------~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~ 117 (291)
T 3ijr_A 45 LKGKNVLITGGDSGIGRAVSIAFAKEG-ANIAIAYLDEEGDAN------ETKQYVEKEGVKCVLLPGDLSDEQHCKDIVQ 117 (291)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSCHHHHH------HHHHHHHTTTCCEEEEESCTTSHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCCchHHHH------HHHHHHHhcCCcEEEEECCCCCHHHHHHHHH
Confidence 356899999999999999999999999 689999886532110 011111 23578999999999998887775
Q ss_pred -------CCCEEEEcCCCCC--------CCCchhhhHHHHHHHHHHHHHHHHhcC--CCEEEEecCccccccCCCCcCCC
Q 047227 83 -------GAEVVFHMAAPNS--------SINNHKLHHSVNVEGTKNVIDACAELK--VKRLIYTSSPSVVFDGVHGIING 145 (485)
Q Consensus 83 -------~~d~Vih~aa~~~--------~~~~~~~~~~~nv~~t~~ll~a~~~~~--v~r~V~~SS~~vy~~~~~~~~~~ 145 (485)
+.|++||+||... +.++++..+++|+.++.++.+++...- ..++|++||...+..
T Consensus 118 ~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~-------- 189 (291)
T 3ijr_A 118 ETVRQLGSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVIINTASIVAYEG-------- 189 (291)
T ss_dssp HHHHHHSSCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEEECCTHHHHC--------
T ss_pred HHHHHcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEEEechHhcCC--------
Confidence 5899999999321 334567899999999999999998752 359999999887741
Q ss_pred CCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCC-ChHHHHHHHHcCCCeEEecCCCcee
Q 047227 146 NEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRL-LVPSLVAAARAGKSKFIIGDGNNVY 221 (485)
Q Consensus 146 ~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~-~~~~~~~~~~~g~~~~~~g~g~~~~ 221 (485)
..+...|+.+|...|.+.+.++.+ .|+++.+++||.++++.... .-...... +.......
T Consensus 190 -------~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~---------~~~~~p~~ 253 (291)
T 3ijr_A 190 -------NETLIDYSATKGAIVAFTRSLSQSLVQKGIRVNGVAPGPIWTPLIPSSFDEKKVSQ---------FGSNVPMQ 253 (291)
T ss_dssp -------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSTHHHHHSCHHHHHH---------TTTTSTTS
T ss_pred -------CCCChhHHHHHHHHHHHHHHHHHHHhhcCEEEEEEeeCCCcCCcccccCCHHHHHH---------HHccCCCC
Confidence 234578999999999998887654 48999999999999873110 00111111 12233445
Q ss_pred ecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCCC
Q 047227 222 DFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMES 262 (485)
Q Consensus 222 ~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~ 262 (485)
.+.+++|+|++++.++.... .-..|+.+++.++..
T Consensus 254 r~~~p~dvA~~v~~L~s~~~------~~itG~~i~vdGG~~ 288 (291)
T 3ijr_A 254 RPGQPYELAPAYVYLASSDS------SYVTGQMIHVNGGVI 288 (291)
T ss_dssp SCBCGGGTHHHHHHHHSGGG------TTCCSCEEEESSSCC
T ss_pred CCcCHHHHHHHHHHHhCCcc------CCCcCCEEEECCCcc
Confidence 68889999999998865322 226799999988754
|
| >2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.85 E-value=1.6e-20 Score=177.45 Aligned_cols=217 Identities=17% Similarity=0.154 Sum_probs=157.2
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHh---
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQAL--- 81 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~--- 81 (485)
.++|++|||||+|+||+++++.|+++| ++|++++|....... +. ...++.++.+|++|++++.+++
T Consensus 4 l~~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~-------~~---~~~~~~~~~~D~~~~~~~~~~~~~~ 72 (246)
T 2ag5_A 4 LDGKVIILTAAAQGIGQAAALAFAREG-AKVIATDINESKLQE-------LE---KYPGIQTRVLDVTKKKQIDQFANEV 72 (246)
T ss_dssp TTTCEEEESSTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHGG-------GG---GSTTEEEEECCTTCHHHHHHHHHHC
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEECCHHHHHH-------HH---hccCceEEEeeCCCHHHHHHHHHHh
Confidence 467899999999999999999999999 699999886432110 11 1237889999999999888775
Q ss_pred cCCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHHH----hcCCCEEEEecCccccccCCCCcCCCCCCCC
Q 047227 82 QGAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDACA----ELKVKRLIYTSSPSVVFDGVHGIINGNEALP 150 (485)
Q Consensus 82 ~~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~~----~~~v~r~V~~SS~~vy~~~~~~~~~~~e~~~ 150 (485)
.++|+|||+||... ..++++..+++|+.++.++.+++. +.+.+++|++||...+...
T Consensus 73 ~~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~------------ 140 (246)
T 2ag5_A 73 ERLDVLFNVAGFVHHGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQKSGNIINMSSVASSVKG------------ 140 (246)
T ss_dssp SCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCSBTTTBC------------
T ss_pred CCCCEEEECCccCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEechHhCcCC------------
Confidence 36899999999432 223566788999999999988875 3467799999998765311
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCCh------HHHHHHHHcCCCeEEecCCCcee
Q 047227 151 YPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLLV------PSLVAAARAGKSKFIIGDGNNVY 221 (485)
Q Consensus 151 ~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~~------~~~~~~~~~g~~~~~~g~g~~~~ 221 (485)
..+...|+.+|...|.+.+.++.+ .|++++++||+.+++|.....+ ........... ...
T Consensus 141 --~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~---------~~~ 209 (246)
T 2ag5_A 141 --VVNRCVYSTTKAAVIGLTKSVAADFIQQGIRCNCVCPGTVDTPSLQERIQARGNPEEARNDFLKRQ---------KTG 209 (246)
T ss_dssp --CTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCEECHHHHHHHHHSSSHHHHHHHHHHTC---------TTS
T ss_pred --CCCCccHHHHHHHHHHHHHHHHHHhhhcCcEEEEEeeCcCcCcchhhhhhcccCcHHHHHHHHhcC---------CCC
Confidence 114578999999999999887643 4899999999999987421101 11111122111 112
Q ss_pred ecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCC
Q 047227 222 DFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNME 261 (485)
Q Consensus 222 ~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~ 261 (485)
.+.+++|+|++++.++.... ....|+.+++.++.
T Consensus 210 ~~~~~~dvA~~v~~l~s~~~------~~~tG~~i~vdgG~ 243 (246)
T 2ag5_A 210 RFATAEEIAMLCVYLASDES------AYVTGNPVIIDGGW 243 (246)
T ss_dssp SCEEHHHHHHHHHHHHSGGG------TTCCSCEEEECTTG
T ss_pred CCCCHHHHHHHHHHHhCccc------cCCCCCEEEECCCc
Confidence 47889999999998864211 22578999998763
|
| >3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=99.85 E-value=4.2e-21 Score=188.76 Aligned_cols=243 Identities=20% Similarity=0.172 Sum_probs=170.7
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccC----Cccchhhhhhhh-cCCCeEEEEecCCCHHHHH
Q 047227 4 EENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALE----PHEEQGILGEAL-RSGRAHYVSFDLRHKAQVL 78 (485)
Q Consensus 4 ~~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~----~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~ 78 (485)
..+++++|||||+|+||+++++.|+++| ++|.+++|....... ............ ...++.++.+|++|++++.
T Consensus 24 ~l~gk~vlVTGas~GIG~aia~~la~~G-~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~ 102 (322)
T 3qlj_A 24 VVDGRVVIVTGAGGGIGRAHALAFAAEG-ARVVVNDIGVGLDGSPASGGSAAQSVVDEITAAGGEAVADGSNVADWDQAA 102 (322)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEECCCBCTTSSBTCTTSHHHHHHHHHHHTTCEEEEECCCTTSHHHHH
T ss_pred ccCCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCcccccccccccHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHH
Confidence 3457899999999999999999999999 699999876211100 011111111111 1356888999999999888
Q ss_pred HHhc-------CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHHHhcC----------CCEEEEecCccc
Q 047227 79 QALQ-------GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDACAELK----------VKRLIYTSSPSV 134 (485)
Q Consensus 79 ~~~~-------~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~~~~~----------v~r~V~~SS~~v 134 (485)
++++ ++|++||+||... +.++++..+++|+.++.++++++...- -.++|++||...
T Consensus 103 ~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~~~~~g~IV~isS~~~ 182 (322)
T 3qlj_A 103 GLIQTAVETFGGLDVLVNNAGIVRDRMIANTSEEEFDAVIAVHLKGHFATMRHAAAYWRGLSKAGKAVDGRIINTSSGAG 182 (322)
T ss_dssp HHHHHHHHHHSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEEECCHHH
T ss_pred HHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHccccCCCCCcEEEEEcCHHH
Confidence 8775 6899999999432 334567789999999999999876431 148999999877
Q ss_pred cccCCCCcCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCChHHHHHHHHcCCCe
Q 047227 135 VFDGVHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSK 211 (485)
Q Consensus 135 y~~~~~~~~~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~ 211 (485)
+. +..+...|+.||+..+.+.+.++.+ +|+++.+++|| +..+..........
T Consensus 183 ~~---------------~~~~~~~Y~asKaal~~l~~~la~e~~~~gI~vn~v~PG-~~t~~~~~~~~~~~--------- 237 (322)
T 3qlj_A 183 LQ---------------GSVGQGNYSAAKAGIATLTLVGAAEMGRYGVTVNAIAPS-ARTRMTETVFAEMM--------- 237 (322)
T ss_dssp HH---------------CBTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC-TTSCCSCCSCCC-----------
T ss_pred cc---------------CCCCCccHHHHHHHHHHHHHHHHHHhcccCcEEEEecCC-CCCccchhhhhhhh---------
Confidence 63 1234578999999999999887654 68999999999 65543322111110
Q ss_pred EEecCCCceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCCCc-----------------cHHHHHHHHHH
Q 047227 212 FIIGDGNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMESI-----------------KFWEFVSLILE 274 (485)
Q Consensus 212 ~~~g~g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~~-----------------t~~el~~~i~~ 274 (485)
........+..++|+|.+++.++.... .-..|+.+++.++... ++.|+++.+.+
T Consensus 238 ---~~~~~~~~~~~pedva~~v~~L~s~~~------~~itG~~i~vdGG~~~~~~~~~~~~~~~~~~~~~~~el~~~~~~ 308 (322)
T 3qlj_A 238 ---ATQDQDFDAMAPENVSPLVVWLGSAEA------RDVTGKVFEVEGGKIRVAEGWAHGPQIDKGARWDPAELGPVVAD 308 (322)
T ss_dssp ---------CCTTCGGGTHHHHHHHTSGGG------GGCCSCEEEEETTEEEEEECCEEEEEEECSSCCCGGGHHHHHHH
T ss_pred ---hccccccCCCCHHHHHHHHHHHhCccc------cCCCCCEEEECCCccccCCCcccccccCccCCCCHHHHHHHHHH
Confidence 011223456789999999998864221 2267899999887543 77999999999
Q ss_pred HcCCCCC
Q 047227 275 GLGYQRP 281 (485)
Q Consensus 275 ~~g~~~~ 281 (485)
.+|.+.+
T Consensus 309 ~~~~~~~ 315 (322)
T 3qlj_A 309 LLGKARP 315 (322)
T ss_dssp HHHHSCC
T ss_pred HhhccCC
Confidence 8886544
|
| >3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.2e-20 Score=180.19 Aligned_cols=200 Identities=17% Similarity=0.085 Sum_probs=147.6
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc--
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ-- 82 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 82 (485)
.++|++|||||+|+||+++++.|.++| ++|.+++|..... ......++.++.+|++|.+++.++++
T Consensus 14 ~~~k~vlVTGas~gIG~aia~~l~~~G-~~V~~~~r~~~~~-----------~~~~~~~~~~~~~Dv~d~~~v~~~~~~~ 81 (266)
T 3p19_A 14 SMKKLVVITGASSGIGEAIARRFSEEG-HPLLLLARRVERL-----------KALNLPNTLCAQVDVTDKYTFDTAITRA 81 (266)
T ss_dssp -CCCEEEEESTTSHHHHHHHHHHHHTT-CCEEEEESCHHHH-----------HTTCCTTEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCHHHH-----------HHhhcCCceEEEecCCCHHHHHHHHHHH
Confidence 456899999999999999999999999 6899998874421 11223478899999999998888775
Q ss_pred -----CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHH----HhcCCCEEEEecCccccccCCCCcCCCC
Q 047227 83 -----GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDAC----AELKVKRLIYTSSPSVVFDGVHGIINGN 146 (485)
Q Consensus 83 -----~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~----~~~~v~r~V~~SS~~vy~~~~~~~~~~~ 146 (485)
++|++||+||... ..++++..+++|+.++.++.+++ ++.+..++|++||...+.
T Consensus 82 ~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~IV~isS~~~~~---------- 151 (266)
T 3p19_A 82 EKIYGPADAIVNNAGMMLLGQIDTQEANEWQRMFDVNVLGLLNGMQAVLAPMKARNCGTIINISSIAGKK---------- 151 (266)
T ss_dssp HHHHCSEEEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTS----------
T ss_pred HHHCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcChhhCC----------
Confidence 6899999999321 23355678999999999976665 455678999999987763
Q ss_pred CCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCCh-HHHHHHHHcCCCeEEecCCCceee
Q 047227 147 EALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLLV-PSLVAAARAGKSKFIIGDGNNVYD 222 (485)
Q Consensus 147 e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~~-~~~~~~~~~g~~~~~~g~g~~~~~ 222 (485)
+..+...|+.+|...+.+.+.++.+ .|+++.+++||.+.++...... ........... .....
T Consensus 152 -----~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~--------~~~~r 218 (266)
T 3p19_A 152 -----TFPDHAAYCGTKFAVHAISENVREEVAASNVRVMTIAPSAVKTELLSHTTSQQIKDGYDAWR--------VDMGG 218 (266)
T ss_dssp -----CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBSSSGGGGCSCHHHHHHHHHHH--------HHTTC
T ss_pred -----CCCCCchHHHHHHHHHHHHHHHHHHhcccCcEEEEEeeCccccchhhcccchhhhHHHHhhc--------ccccC
Confidence 1235678999999999998877654 5899999999999887532211 11111111100 01234
Q ss_pred cccHHHHHHHHHHHHHH
Q 047227 223 FTYVANVAHAHICAERA 239 (485)
Q Consensus 223 ~i~v~D~a~a~~~~~~~ 239 (485)
+++++|+|++++.++..
T Consensus 219 ~~~pedvA~av~~l~~~ 235 (266)
T 3p19_A 219 VLAADDVARAVLFAYQQ 235 (266)
T ss_dssp CBCHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHcC
Confidence 78899999999998773
|
| >3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis} | Back alignment and structure |
|---|
Probab=99.85 E-value=2.2e-20 Score=179.76 Aligned_cols=221 Identities=14% Similarity=0.046 Sum_probs=158.5
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhh--cCCCeEEEEecCCCHHHHHHHhc
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEAL--RSGRAHYVSFDLRHKAQVLQALQ 82 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~Dl~d~~~l~~~~~ 82 (485)
.++|++|||||+|+||+++++.|+++| ++|++++|..... +. ....+ ...++.++.+|++|.+++.++++
T Consensus 32 l~~k~vlITGasggIG~~la~~L~~~G-~~V~~~~r~~~~~----~~---~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 103 (279)
T 3ctm_A 32 LKGKVASVTGSSGGIGWAVAEAYAQAG-ADVAIWYNSHPAD----EK---AEHLQKTYGVHSKAYKCNISDPKSVEETIS 103 (279)
T ss_dssp CTTCEEEETTTTSSHHHHHHHHHHHHT-CEEEEEESSSCCH----HH---HHHHHHHHCSCEEEEECCTTCHHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCCHHHH----HH---HHHHHHhcCCcceEEEeecCCHHHHHHHHH
Confidence 456899999999999999999999999 6899998865321 11 11111 13578999999999998888775
Q ss_pred C-------CCEEEEcCCCCCC---------CCchhhhHHHHHHH----HHHHHHHHHhcCCCEEEEecCccccccCCCCc
Q 047227 83 G-------AEVVFHMAAPNSS---------INNHKLHHSVNVEG----TKNVIDACAELKVKRLIYTSSPSVVFDGVHGI 142 (485)
Q Consensus 83 ~-------~d~Vih~aa~~~~---------~~~~~~~~~~nv~~----t~~ll~a~~~~~v~r~V~~SS~~vy~~~~~~~ 142 (485)
. +|+|||+||.... .+++...+++|+.+ ++++++.+++.+.+++|++||...+...
T Consensus 104 ~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~---- 179 (279)
T 3ctm_A 104 QQEKDFGTIDVFVANAGVTWTQGPEIDVDNYDSWNKIISVDLNGVYYCSHNIGKIFKKNGKGSLIITSSISGKIVN---- 179 (279)
T ss_dssp HHHHHHSCCSEEEECGGGSTTC--CCCSSHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSCC-----
T ss_pred HHHHHhCCCCEEEECCcccccCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEECchHhccCC----
Confidence 3 8999999993221 12345688999999 6677888888888899999998765210
Q ss_pred CCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCc
Q 047227 143 INGNEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNN 219 (485)
Q Consensus 143 ~~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~ 219 (485)
+..+...|+.+|...|.+++.++.+ .+ ++.+++|+.+.++.....-+.......... .
T Consensus 180 ---------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~-~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~---------p 240 (279)
T 3ctm_A 180 ---------IPQLQAPYNTAKAACTHLAKSLAIEWAPFA-RVNTISPGYIDTDITDFASKDMKAKWWQLT---------P 240 (279)
T ss_dssp -----------CCHHHHHHHHHHHHHHHHHHHHHTTTTC-EEEEEEECSBSSTTTSSCCHHHHHHHHHHS---------T
T ss_pred ---------CCCCcccHHHHHHHHHHHHHHHHHHhcccC-CEEEEeccCCccccccccChHHHHHHHHhC---------C
Confidence 1245678999999999999887643 46 999999999988754322222222222111 1
Q ss_pred eeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCCC
Q 047227 220 VYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMES 262 (485)
Q Consensus 220 ~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~ 262 (485)
...+++++|+|++++.++.... ....|+.+++.++..
T Consensus 241 ~~~~~~~~dvA~~~~~l~s~~~------~~~tG~~i~vdgG~~ 277 (279)
T 3ctm_A 241 LGREGLTQELVGGYLYLASNAS------TFTTGSDVVIDGGYT 277 (279)
T ss_dssp TCSCBCGGGTHHHHHHHHSGGG------TTCCSCEEEESTTCC
T ss_pred ccCCcCHHHHHHHHHHHhCccc------cCccCCEEEECCCee
Confidence 2347899999999998865321 226789999988743
|
| >3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A | Back alignment and structure |
|---|
Probab=99.85 E-value=6.1e-21 Score=182.34 Aligned_cols=218 Identities=16% Similarity=0.105 Sum_probs=155.8
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc--
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ-- 82 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 82 (485)
.++|++|||||+|+||+++++.|.++| ++|.+.+|...... + .... ...++.++.+|++|++++.++++
T Consensus 25 l~gk~vlVTGas~gIG~aia~~la~~G-~~V~~~~r~~~~~~----~---~~~~-~~~~~~~~~~Dv~d~~~v~~~~~~~ 95 (266)
T 3grp_A 25 LTGRKALVTGATGGIGEAIARCFHAQG-AIVGLHGTREDKLK----E---IAAD-LGKDVFVFSANLSDRKSIKQLAEVA 95 (266)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHH----H---HHHH-HCSSEEEEECCTTSHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHH----H---HHHH-hCCceEEEEeecCCHHHHHHHHHHH
Confidence 456899999999999999999999999 68999888643110 0 1111 14578999999999998888775
Q ss_pred -----CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHH----HhcCCCEEEEecCccccccCCCCcCCCC
Q 047227 83 -----GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDAC----AELKVKRLIYTSSPSVVFDGVHGIINGN 146 (485)
Q Consensus 83 -----~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~----~~~~v~r~V~~SS~~vy~~~~~~~~~~~ 146 (485)
+.|+|||+||... ..++++..+++|+.++.++.+++ ++.+..++|++||...+.
T Consensus 96 ~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~Iv~isS~~~~~---------- 165 (266)
T 3grp_A 96 EREMEGIDILVNNAGITRDGLFVRMQDQDWDDVLAVNLTAASTLTRELIHSMMRRRYGRIINITSIVGVV---------- 165 (266)
T ss_dssp HHHHTSCCEEEECCCCC-----CCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCC--------------
T ss_pred HHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEECCHHHcC----------
Confidence 6999999999322 23456778999999966665554 455667999999977653
Q ss_pred CCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCceeec
Q 047227 147 EALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDF 223 (485)
Q Consensus 147 e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~ 223 (485)
+..+...|+.+|...+.+.+.++.+ .|+++.+++||.+.++......+.......... ....+
T Consensus 166 -----~~~~~~~Y~asKaa~~~~~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~---------p~~r~ 231 (266)
T 3grp_A 166 -----GNPGQTNYCAAKAGLIGFSKALAQEIASRNITVNCIAPGFIKSAMTDKLNEKQKEAIMAMI---------PMKRM 231 (266)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSHHHHTCCHHHHHHHHTTC---------TTCSC
T ss_pred -----CCCCchhHHHHHHHHHHHHHHHHHHhhhhCcEEEEEeeCcCCCchhhccCHHHHHHHHhcC---------CCCCC
Confidence 1235678999999999888877643 589999999999987643222233333333332 23457
Q ss_pred ccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCC
Q 047227 224 TYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNME 261 (485)
Q Consensus 224 i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~ 261 (485)
.+++|+|++++.++.... .-..|+.+++.++.
T Consensus 232 ~~~edvA~~v~~L~s~~~------~~itG~~i~vdGG~ 263 (266)
T 3grp_A 232 GIGEEIAFATVYLASDEA------AYLTGQTLHINGGM 263 (266)
T ss_dssp BCHHHHHHHHHHHHSGGG------TTCCSCEEEESTTC
T ss_pred cCHHHHHHHHHHHhCccc------cCccCCEEEECCCe
Confidence 789999999998865221 22679999998764
|
| >3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.9e-20 Score=178.97 Aligned_cols=221 Identities=14% Similarity=0.036 Sum_probs=157.4
Q ss_pred CCCCEEEEEcCCCc-hHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhh--hcCCCeEEEEecCCCHHHHHHHh
Q 047227 5 ENERLCVVTGGRGF-AARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEA--LRSGRAHYVSFDLRHKAQVLQAL 81 (485)
Q Consensus 5 ~~~~~iLVtGgtG~-iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~Dl~d~~~l~~~~ 81 (485)
.+++++|||||+|+ ||+++++.|+++| ++|.+++|....... ..... ....++.++.+|++|++++.+++
T Consensus 20 l~~k~vlITGasg~GIG~~~a~~l~~~G-~~V~~~~r~~~~~~~------~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~ 92 (266)
T 3o38_A 20 LKGKVVLVTAAAGTGIGSTTARRALLEG-ADVVISDYHERRLGE------TRDQLADLGLGRVEAVVCDVTSTEAVDALI 92 (266)
T ss_dssp TTTCEEEESSCSSSSHHHHHHHHHHHTT-CEEEEEESCHHHHHH------HHHHHHTTCSSCEEEEECCTTCHHHHHHHH
T ss_pred CCCCEEEEECCCCCchHHHHHHHHHHCC-CEEEEecCCHHHHHH------HHHHHHhcCCCceEEEEeCCCCHHHHHHHH
Confidence 45789999999985 9999999999999 689999887542111 01111 11357999999999999888877
Q ss_pred c-------CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHHHhc-----CCCEEEEecCccccccCCCCc
Q 047227 82 Q-------GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDACAEL-----KVKRLIYTSSPSVVFDGVHGI 142 (485)
Q Consensus 82 ~-------~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~~~~-----~v~r~V~~SS~~vy~~~~~~~ 142 (485)
+ +.|+|||+||... ..++++..+++|+.++.++.+++... +..++|++||...+.
T Consensus 93 ~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~------ 166 (266)
T 3o38_A 93 TQTVEKAGRLDVLVNNAGLGGQTPVVDMTDEEWDRVLNVTLTSVMRATRAALRYFRGVDHGGVIVNNASVLGWR------ 166 (266)
T ss_dssp HHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSCCEEEEEECCGGGTC------
T ss_pred HHHHHHhCCCcEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHcC------
Confidence 5 5899999999322 23356778999999999999987764 456899999977652
Q ss_pred CCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCc
Q 047227 143 INGNEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNN 219 (485)
Q Consensus 143 ~~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~ 219 (485)
+..+...|+.+|+..+.+.+.++.+ .|+++.+++||.+..+....... ............
T Consensus 167 ---------~~~~~~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~--------~~~~~~~~~~~~ 229 (266)
T 3o38_A 167 ---------AQHSQSHYAAAKAGVMALTRCSAIEAVEFGVRINAVSPSIARHKFLEKTSS--------SELLDRLASDEA 229 (266)
T ss_dssp ---------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCC-------------------------CCT
T ss_pred ---------CCCCCchHHHHHHHHHHHHHHHHHHHHHcCcEEEEEeCCcccchhhhccCc--------HHHHHHHHhcCC
Confidence 2345678999999999999877654 68999999999998764321111 111111112234
Q ss_pred eeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCC
Q 047227 220 VYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNME 261 (485)
Q Consensus 220 ~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~ 261 (485)
...+.+++|+|++++.++.... ....|+.+++.++.
T Consensus 230 ~~r~~~~~dva~~i~~l~s~~~------~~~tG~~i~vdgG~ 265 (266)
T 3o38_A 230 FGRAAEPWEVAATIAFLASDYS------SYMTGEVVSVSSQR 265 (266)
T ss_dssp TSSCCCHHHHHHHHHHHHSGGG------TTCCSCEEEESSCC
T ss_pred cCCCCCHHHHHHHHHHHcCccc------cCccCCEEEEcCCc
Confidence 4568899999999998865322 23679999998763
|
| >2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.85 E-value=4.3e-20 Score=174.06 Aligned_cols=210 Identities=11% Similarity=0.107 Sum_probs=153.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCc------eEEEeecCCccccCCccchhhhhhhhc--CCCeEEEEecCCCHHHHH
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMF------SVRIADLSDSIALEPHEEQGILGEALR--SGRAHYVSFDLRHKAQVL 78 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~------~V~~~~r~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~Dl~d~~~l~ 78 (485)
+|+||||||+|+||+++++.|+++|+. +|.+++|...... . +...+. ..++.++.+|++|++++.
T Consensus 2 ~k~vlITGasggiG~~la~~l~~~G~~~~~~~~~V~~~~r~~~~~~----~---~~~~~~~~~~~~~~~~~D~~~~~~v~ 74 (244)
T 2bd0_A 2 KHILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLE----K---ISLECRAEGALTDTITADISDMADVR 74 (244)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHH----H---HHHHHHTTTCEEEEEECCTTSHHHHH
T ss_pred CCEEEEECCCChHHHHHHHHHHHhcCcccccceEEEEEeCCHHHHH----H---HHHHHHccCCeeeEEEecCCCHHHHH
Confidence 478999999999999999999999932 8988888643110 0 111111 346889999999999888
Q ss_pred HHhc-------CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHHHh----cCCCEEEEecCccccccCCC
Q 047227 79 QALQ-------GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDACAE----LKVKRLIYTSSPSVVFDGVH 140 (485)
Q Consensus 79 ~~~~-------~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~~~----~~v~r~V~~SS~~vy~~~~~ 140 (485)
++++ ++|+|||+||... ..++++..+++|+.++.++++++.. .+.+++|++||...+.
T Consensus 75 ~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~---- 150 (244)
T 2bd0_A 75 RLTTHIVERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQHSGHIFFITSVAATK---- 150 (244)
T ss_dssp HHHHHHHHHTSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS----
T ss_pred HHHHHHHHhCCCCCEEEEcCCcCCcCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCEEEEEecchhcC----
Confidence 8775 6999999999432 2345677899999999999988753 4667999999988763
Q ss_pred CcCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHh---CCCCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCC
Q 047227 141 GIINGNEALPYPPKHNDFYSATKAEGEALVIKAN---GTNGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDG 217 (485)
Q Consensus 141 ~~~~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~---~~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g 217 (485)
+..+...|+.+|...|.+.+.++ ...|++++++|||.++++.....- . .
T Consensus 151 -----------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~----------~------~- 202 (244)
T 2bd0_A 151 -----------AFRHSSIYCMSKFGQRGLVETMRLYARKCNVRITDVQPGAVYTPMWGKVD----------D------E- 202 (244)
T ss_dssp -----------CCTTCHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCSTTTCCCC----------S------T-
T ss_pred -----------CCCCCchhHHHHHHHHHHHHHHHHHhhccCcEEEEEECCCccchhhhhcc----------c------c-
Confidence 12456789999999999987654 357899999999999998543210 0 0
Q ss_pred CceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCCC
Q 047227 218 NNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMES 262 (485)
Q Consensus 218 ~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~ 262 (485)
. ...+++++|+|++++.++..... ...|+.+....++.
T Consensus 203 ~-~~~~~~~~dva~~~~~l~~~~~~------~~~g~~~~~~~~~~ 240 (244)
T 2bd0_A 203 M-QALMMMPEDIAAPVVQAYLQPSR------TVVEEIILRPTSGD 240 (244)
T ss_dssp T-GGGSBCHHHHHHHHHHHHTSCTT------EEEEEEEEEETTCC
T ss_pred c-cccCCCHHHHHHHHHHHHhCCcc------ccchheEEeccccc
Confidence 0 13689999999999988753211 13455555555443
|
| >3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.85 E-value=2.3e-20 Score=179.04 Aligned_cols=221 Identities=16% Similarity=0.099 Sum_probs=160.6
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhh-cCCCeEEEEecCCCHHHHHHHhc-
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEAL-RSGRAHYVSFDLRHKAQVLQALQ- 82 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~- 82 (485)
.++|++|||||+|+||+++++.|.++| ++|.+++|.... .+ ...... ...++.++.+|++|.+++.++.+
T Consensus 29 l~gk~~lVTGas~GIG~aia~~la~~G-~~V~~~~r~~~~-----~~--~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~ 100 (273)
T 3uf0_A 29 LAGRTAVVTGAGSGIGRAIAHGYARAG-AHVLAWGRTDGV-----KE--VADEIADGGGSAEAVVADLADLEGAANVAEE 100 (273)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSTHH-----HH--HHHHHHTTTCEEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEcCHHHH-----HH--HHHHHHhcCCcEEEEEecCCCHHHHHHHHHH
Confidence 457899999999999999999999999 689988865321 00 011111 23568899999999988877654
Q ss_pred -----CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHH----HhcCCCEEEEecCccccccCCCCcCCCC
Q 047227 83 -----GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDAC----AELKVKRLIYTSSPSVVFDGVHGIINGN 146 (485)
Q Consensus 83 -----~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~----~~~~v~r~V~~SS~~vy~~~~~~~~~~~ 146 (485)
+.|+|||+||... +.++++..+++|+.++.++.+++ ++.+..++|++||...+.
T Consensus 101 ~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~IV~isS~~~~~---------- 170 (273)
T 3uf0_A 101 LAATRRVDVLVNNAGIIARAPAEEVSLGRWREVLTVNLDAAWVLSRSFGTAMLAHGSGRIVTIASMLSFQ---------- 170 (273)
T ss_dssp HHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS----------
T ss_pred HHhcCCCcEEEECCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcchHhcC----------
Confidence 6999999999332 33456778999999999999887 445667999999987763
Q ss_pred CCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCC--hHHHHHHHHcCCCeEEecCCCcee
Q 047227 147 EALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLL--VPSLVAAARAGKSKFIIGDGNNVY 221 (485)
Q Consensus 147 e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~--~~~~~~~~~~g~~~~~~g~g~~~~ 221 (485)
+..+...|+.+|...+.+.+.++.+ .|+++.+++||.+.++..... .+.......... ...
T Consensus 171 -----~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~---------p~~ 236 (273)
T 3uf0_A 171 -----GGRNVAAYAASKHAVVGLTRALASEWAGRGVGVNALAPGYVVTANTAALRADDERAAEITARI---------PAG 236 (273)
T ss_dssp -----CCSSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGGGHHHHTSHHHHHHHHHHS---------TTS
T ss_pred -----CCCCChhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeCCCcCCchhhcccCHHHHHHHHhcC---------CCC
Confidence 2345678999999999999887754 689999999999998753211 111222222221 223
Q ss_pred ecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCCCc
Q 047227 222 DFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMESI 263 (485)
Q Consensus 222 ~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~~ 263 (485)
.+.+++|+|++++.++.... .-..|+.+++.+|..+
T Consensus 237 r~~~pedva~~v~~L~s~~a------~~itG~~i~vdGG~~~ 272 (273)
T 3uf0_A 237 RWATPEDMVGPAVFLASDAA------SYVHGQVLAVDGGWLA 272 (273)
T ss_dssp SCBCGGGGHHHHHHHHSGGG------TTCCSCEEEESTTGGG
T ss_pred CCCCHHHHHHHHHHHhCchh------cCCcCCEEEECcCccC
Confidence 57789999999998865322 2267999999887543
|
| >4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.4e-20 Score=180.99 Aligned_cols=221 Identities=19% Similarity=0.165 Sum_probs=160.1
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc--
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ-- 82 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 82 (485)
.++|++|||||+|+||+++++.|+++| ++|.+++|....... .... ...++.++.+|++|++++.++++
T Consensus 25 l~~k~vlVTGas~GIG~aia~~l~~~G-~~V~~~~r~~~~~~~-------~~~~-~~~~~~~~~~Dv~d~~~v~~~~~~~ 95 (277)
T 4dqx_A 25 LNQRVCIVTGGGSGIGRATAELFAKNG-AYVVVADVNEDAAVR-------VANE-IGSKAFGVRVDVSSAKDAESMVEKT 95 (277)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSHHHHHH-------HHHH-HCTTEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHH-------HHHH-hCCceEEEEecCCCHHHHHHHHHHH
Confidence 356899999999999999999999999 699999886431110 1111 14578999999999998888775
Q ss_pred -----CCCEEEEcCCCC-------CCCCchhhhHHHHHHHHHHHHHHHH----hcCCCEEEEecCccccccCCCCcCCCC
Q 047227 83 -----GAEVVFHMAAPN-------SSINNHKLHHSVNVEGTKNVIDACA----ELKVKRLIYTSSPSVVFDGVHGIINGN 146 (485)
Q Consensus 83 -----~~d~Vih~aa~~-------~~~~~~~~~~~~nv~~t~~ll~a~~----~~~v~r~V~~SS~~vy~~~~~~~~~~~ 146 (485)
+.|++||+||.. ...++++..+++|+.++.++.+++. +.+..++|++||...+.
T Consensus 96 ~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~---------- 165 (277)
T 4dqx_A 96 TAKWGRVDVLVNNAGFGTTGNVVTIPEETWDRIMSVNVKGIFLCSKYVIPVMRRNGGGSIINTTSYTATS---------- 165 (277)
T ss_dssp HHHHSCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTTCEEEEEECCGGGTS----------
T ss_pred HHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEECchhhCc----------
Confidence 689999999932 1234566788999999998888874 44556999999987763
Q ss_pred CCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCC------CChHHHHHHHHcCCCeEEecCC
Q 047227 147 EALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDR------LLVPSLVAAARAGKSKFIIGDG 217 (485)
Q Consensus 147 e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~------~~~~~~~~~~~~g~~~~~~g~g 217 (485)
+..+...|+.||+..+.+.+.++.+ .|+++.+++||.+..+... ........... ..
T Consensus 166 -----~~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~---------~~ 231 (277)
T 4dqx_A 166 -----AIADRTAYVASKGAISSLTRAMAMDHAKEGIRVNAVAPGTIDSPYFTKIFAEAKDPAKLRSDFN---------AR 231 (277)
T ss_dssp -----CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHHHHHTCSCHHHHHHHHH---------TT
T ss_pred -----CCCCChhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcCcCchhhhhcccccchhHHHHHHH---------hc
Confidence 2345678999999999998877644 4899999999999865200 00111111111 22
Q ss_pred CceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCCCcc
Q 047227 218 NNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMESIK 264 (485)
Q Consensus 218 ~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~~t 264 (485)
.....+.+++|+|++++.++.... .-..|+.+++.++..++
T Consensus 232 ~~~~r~~~pedvA~~v~~L~s~~~------~~itG~~i~vdGG~~~~ 272 (277)
T 4dqx_A 232 AVMDRMGTAEEIAEAMLFLASDRS------RFATGSILTVDGGSSIG 272 (277)
T ss_dssp STTCSCBCHHHHHHHHHHHHSGGG------TTCCSCEEEESSSSSSC
T ss_pred CcccCCcCHHHHHHHHHHHhCCcc------CCCcCCEEEECCchhhh
Confidence 234457889999999998865221 22679999998876543
|
| >3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=99.85 E-value=2.7e-20 Score=179.12 Aligned_cols=238 Identities=18% Similarity=0.070 Sum_probs=165.4
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccC-----Cccchhhhhhh--hcCCCeEEEEecCCCHHHH
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALE-----PHEEQGILGEA--LRSGRAHYVSFDLRHKAQV 77 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~-----~~~~~~~~~~~--~~~~~v~~~~~Dl~d~~~l 77 (485)
.++|++|||||+|+||+++++.|.++| ++|.+++|....... ..+........ ....++.++.+|++|++++
T Consensus 11 l~gk~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v 89 (278)
T 3sx2_A 11 LTGKVAFITGAARGQGRAHAVRLAADG-ADIIAVDLCDQIASVPYPLATPEELAATVKLVEDIGSRIVARQADVRDRESL 89 (278)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHHTCCEEEEECCTTCHHHH
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCC-CeEEEEecccccccccccccchHHHHHHHHHHHhcCCeEEEEeCCCCCHHHH
Confidence 457899999999999999999999999 689999886321110 01110001111 1246799999999999998
Q ss_pred HHHhc-------CCCEEEEcCCCCC---CCCchhhhHHHHHHHHHHHHHHHHhc----C-CCEEEEecCccccccCCCCc
Q 047227 78 LQALQ-------GAEVVFHMAAPNS---SINNHKLHHSVNVEGTKNVIDACAEL----K-VKRLIYTSSPSVVFDGVHGI 142 (485)
Q Consensus 78 ~~~~~-------~~d~Vih~aa~~~---~~~~~~~~~~~nv~~t~~ll~a~~~~----~-v~r~V~~SS~~vy~~~~~~~ 142 (485)
.++++ +.|++||+||... ..++++..+++|+.++.++.+++... + ..++|++||...+...
T Consensus 90 ~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~~---- 165 (278)
T 3sx2_A 90 SAALQAGLDELGRLDIVVANAGIAPMSAGDDGWHDVIDVNLTGVYHTIKVAIPTLVKQGTGGSIVLISSSAGLAGV---- 165 (278)
T ss_dssp HHHHHHHHHHHCCCCEEEECCCCCCCSSTHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECCGGGTSCC----
T ss_pred HHHHHHHHHHcCCCCEEEECCCCCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEEccHHhcCCC----
Confidence 88876 6999999999332 34567789999999999999986542 3 4689999998765311
Q ss_pred CCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCCh-HHHH-HHHHcCCCeEEecCC
Q 047227 143 INGNEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLLV-PSLV-AAARAGKSKFIIGDG 217 (485)
Q Consensus 143 ~~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~~-~~~~-~~~~~g~~~~~~g~g 217 (485)
.. +..+...|+.+|+..+.+.+.++.+ .|+++.+++||.+.++...... ..+. ............++.
T Consensus 166 ---~~----~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (278)
T 3sx2_A 166 ---GS----ADPGSVGYVAAKHGVVGLMRVYANLLAGQMIRVNSIHPSGVETPMINNEFTREWLAKMAAATDTPGAMGNA 238 (278)
T ss_dssp ---CC----SSHHHHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCBSSTTTSSHHHHHHHHHHHHHCC--CTTSCS
T ss_pred ---cc----CCCCchHhHHHHHHHHHHHHHHHHHHhccCcEEEEEecCCccCccchhhhHHHHHhhccchhhhhhhhhhh
Confidence 00 1234567999999999998887643 5799999999999988654321 1222 122222222223333
Q ss_pred CceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCC
Q 047227 218 NNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNME 261 (485)
Q Consensus 218 ~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~ 261 (485)
.. ..+.+++|+|++++.++... ..-..|+.+++.++.
T Consensus 239 ~p-~~~~~p~dvA~~v~~l~s~~------~~~itG~~i~vdGG~ 275 (278)
T 3sx2_A 239 MP-VEVLAPEDVANAVAWLVSDQ------ARYITGVTLPVDAGF 275 (278)
T ss_dssp SS-CSSBCHHHHHHHHHHHTSGG------GTTCCSCEEEESTTT
T ss_pred cC-cCcCCHHHHHHHHHHHhCcc------cccccCCEEeECCCc
Confidence 34 67899999999999886421 122679999998864
|
| >2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.6e-20 Score=177.28 Aligned_cols=219 Identities=16% Similarity=0.109 Sum_probs=154.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhh--cCCCeEEEEecCCCHHHHHHHhc-
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEAL--RSGRAHYVSFDLRHKAQVLQALQ- 82 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~Dl~d~~~l~~~~~- 82 (485)
++|++|||||+|+||+++++.|+++| ++|++++|...... ++ ....+ ...++.++.+|++|++++.++++
T Consensus 3 ~~k~vlVTGas~giG~~ia~~l~~~G-~~V~~~~r~~~~~~---~~---~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 75 (246)
T 2uvd_A 3 KGKVALVTGASRGIGRAIAIDLAKQG-ANVVVNYAGNEQKA---NE---VVDEIKKLGSDAIAVRADVANAEDVTNMVKQ 75 (246)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTT-CEEEEEESSCHHHH---HH---HHHHHHHTTCCEEEEECCTTCHHHHHHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCCCHHHH---HH---HHHHHHhcCCcEEEEEcCCCCHHHHHHHHHH
Confidence 46899999999999999999999999 68998887322110 00 11111 13568899999999998888776
Q ss_pred ------CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHH----HhcCCCEEEEecCccccccCCCCcCCC
Q 047227 83 ------GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDAC----AELKVKRLIYTSSPSVVFDGVHGIING 145 (485)
Q Consensus 83 ------~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~----~~~~v~r~V~~SS~~vy~~~~~~~~~~ 145 (485)
++|++||+||... ..++++..+++|+.++.++.+++ ++.+.+++|++||...+..
T Consensus 76 ~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~-------- 147 (246)
T 2uvd_A 76 TVDVFGQVDILVNNAGVTKDNLLMRMKEEEWDTVINTNLKGVFLCTKAVSRFMMRQRHGRIVNIASVVGVTG-------- 147 (246)
T ss_dssp HHHHHSCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHC--------
T ss_pred HHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECCHHhcCC--------
Confidence 6999999999432 22356778999999977666554 4456789999999876531
Q ss_pred CCCCCCCCCCCchHHHHHHHHHHHHHHHhC---CCCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCceee
Q 047227 146 NEALPYPPKHNDFYSATKAEGEALVIKANG---TNGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYD 222 (485)
Q Consensus 146 ~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~---~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~ 222 (485)
..+...|+.+|...+.+.+.++. ..|+++++++||.+.++................. ....
T Consensus 148 -------~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~---------p~~~ 211 (246)
T 2uvd_A 148 -------NPGQANYVAAKAGVIGLTKTSAKELASRNITVNAIAPGFIATDMTDVLDENIKAEMLKLI---------PAAQ 211 (246)
T ss_dssp -------CTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBGGGCSSCCCTTHHHHHHHTC---------TTCS
T ss_pred -------CCCCchHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeccccCcchhhcCHHHHHHHHhcC---------CCCC
Confidence 23457899999999988877653 3589999999999988753321111122222221 1234
Q ss_pred cccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCC
Q 047227 223 FTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNME 261 (485)
Q Consensus 223 ~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~ 261 (485)
+.+++|+|++++.++.... .-..|+.+++.++.
T Consensus 212 ~~~~~dvA~~~~~l~s~~~------~~~tG~~~~vdgG~ 244 (246)
T 2uvd_A 212 FGEAQDIANAVTFFASDQS------KYITGQTLNVDGGM 244 (246)
T ss_dssp CBCHHHHHHHHHHHHSGGG------TTCCSCEEEESTTS
T ss_pred CcCHHHHHHHHHHHcCchh------cCCCCCEEEECcCc
Confidence 7899999999998864211 22568899988764
|
| >4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.5e-20 Score=180.35 Aligned_cols=218 Identities=17% Similarity=0.142 Sum_probs=150.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEe-ecCCccccCCccchhhhhhhh--cCCCeEEEEecCCCHHHHHHHhc
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIA-DLSDSIALEPHEEQGILGEAL--RSGRAHYVSFDLRHKAQVLQALQ 82 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~-~r~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~Dl~d~~~l~~~~~ 82 (485)
+++++|||||+|+||+++++.|+++| ++|.+. .|...... . ....+ ...++.++.+|++|.+++.++++
T Consensus 25 ~~k~vlITGas~gIG~a~a~~l~~~G-~~V~~~~~~~~~~~~----~---~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~ 96 (272)
T 4e3z_A 25 DTPVVLVTGGSRGIGAAVCRLAARQG-WRVGVNYAANREAAD----A---VVAAITESGGEAVAIPGDVGNAADIAAMFS 96 (272)
T ss_dssp CSCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESSCHHHHH----H---HHHHHHHTTCEEEEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEcCCChhHHH----H---HHHHHHhcCCcEEEEEcCCCCHHHHHHHHH
Confidence 45789999999999999999999999 688776 44322110 0 11111 13578899999999998887775
Q ss_pred -------CCCEEEEcCCCCC--------CCCchhhhHHHHHHHHHHHHHHHHhc-------CCCEEEEecCccccccCCC
Q 047227 83 -------GAEVVFHMAAPNS--------SINNHKLHHSVNVEGTKNVIDACAEL-------KVKRLIYTSSPSVVFDGVH 140 (485)
Q Consensus 83 -------~~d~Vih~aa~~~--------~~~~~~~~~~~nv~~t~~ll~a~~~~-------~v~r~V~~SS~~vy~~~~~ 140 (485)
++|+|||+||... +.++++..+++|+.++.++.+++... +..++|++||...+...
T Consensus 97 ~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~-- 174 (272)
T 4e3z_A 97 AVDRQFGRLDGLVNNAGIVDYPQRVDEMSVERIERMLRVNVTGSILCAAEAVRRMSRLYSGQGGAIVNVSSMAAILGS-- 174 (272)
T ss_dssp HHHHHHSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCTHHHHCC--
T ss_pred HHHHhCCCCCEEEECCCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccCCCCEEEEEcchHhccCC--
Confidence 5899999999432 33456788999999999999887654 34689999998776411
Q ss_pred CcCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCC-ChHHHHHHHHcCCCeEEecC
Q 047227 141 GIINGNEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRL-LVPSLVAAARAGKSKFIIGD 216 (485)
Q Consensus 141 ~~~~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~-~~~~~~~~~~~g~~~~~~g~ 216 (485)
......|+.+|+..|.+.+.++.+ .|+++++++||.+.++.... ..+....... .
T Consensus 175 ------------~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~---------~ 233 (272)
T 4e3z_A 175 ------------ATQYVDYAASKAAIDTFTIGLAREVAAEGIRVNAVRPGIIETDLHASGGLPDRAREMA---------P 233 (272)
T ss_dssp ------------TTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBC---------------------------
T ss_pred ------------CCCcchhHHHHHHHHHHHHHHHHHHHHcCcEEEEEecCCCcCCcccccCChHHHHHHh---------h
Confidence 123467999999999998877654 48999999999999875322 1111111111 1
Q ss_pred CCceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCC
Q 047227 217 GNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNM 260 (485)
Q Consensus 217 g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~ 260 (485)
......+.+++|+|++++.++.... ....|+.|++.+|
T Consensus 234 ~~~~~~~~~~edvA~~i~~l~s~~~------~~~tG~~i~vdgG 271 (272)
T 4e3z_A 234 SVPMQRAGMPEEVADAILYLLSPSA------SYVTGSILNVSGG 271 (272)
T ss_dssp CCTTSSCBCHHHHHHHHHHHHSGGG------TTCCSCEEEESTT
T ss_pred cCCcCCCcCHHHHHHHHHHHhCCcc------ccccCCEEeecCC
Confidence 2233456789999999998865322 2267899999875
|
| >1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.85 E-value=3e-20 Score=177.66 Aligned_cols=225 Identities=15% Similarity=0.070 Sum_probs=156.8
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc--
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ-- 82 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 82 (485)
.++|++|||||+|+||+++++.|+++| ++|++++|..........+ +.......++.++.+|++|++++.++++
T Consensus 11 l~~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~---~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~ 86 (267)
T 1iy8_A 11 FTDRVVLITGGGSGLGRATAVRLAAEG-AKLSLVDVSSEGLEASKAA---VLETAPDAEVLTTVADVSDEAQVEAYVTAT 86 (267)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHH---HHHHCTTCCEEEEECCTTSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHH---HHhhcCCceEEEEEccCCCHHHHHHHHHHH
Confidence 456899999999999999999999999 6999998875321100000 1111114578899999999998888775
Q ss_pred -----CCCEEEEcCCCCC--------CCCchhhhHHHHHHHHHHHHHH----HHhcCCCEEEEecCccccccCCCCcCCC
Q 047227 83 -----GAEVVFHMAAPNS--------SINNHKLHHSVNVEGTKNVIDA----CAELKVKRLIYTSSPSVVFDGVHGIING 145 (485)
Q Consensus 83 -----~~d~Vih~aa~~~--------~~~~~~~~~~~nv~~t~~ll~a----~~~~~v~r~V~~SS~~vy~~~~~~~~~~ 145 (485)
++|+|||+||... ..++++..+++|+.++.++.++ +++.+.+++|++||...+.
T Consensus 87 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~--------- 157 (267)
T 1iy8_A 87 TERFGRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQGSGMVVNTASVGGIR--------- 157 (267)
T ss_dssp HHHHSCCSEEEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTS---------
T ss_pred HHHcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEEcchhhcc---------
Confidence 5899999999432 2235677889999988766554 4556778999999987652
Q ss_pred CCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCC--------ChHHHHHHHHcCCCeEEe
Q 047227 146 NEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRL--------LVPSLVAAARAGKSKFII 214 (485)
Q Consensus 146 ~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~--------~~~~~~~~~~~g~~~~~~ 214 (485)
+..+...|+.+|...+.+.+.++.+ .|+++++++||.++++.... ............
T Consensus 158 ------~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~------ 225 (267)
T 1iy8_A 158 ------GIGNQSGYAAAKHGVVGLTRNSAVEYGRYGIRINAIAPGAIWTPMVENSMKQLDPENPRKAAEEFIQV------ 225 (267)
T ss_dssp ------BCSSBHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSHHHHHHHHHHCTTCHHHHHHHHHTT------
T ss_pred ------CCCCCccHHHHHHHHHHHHHHHHHHHHhcCeEEEEEEeCCCcCcchhccccccChhhhhhHHHHHhcc------
Confidence 1234678999999999998876643 58999999999998763110 001000011111
Q ss_pred cCCCceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCCCc
Q 047227 215 GDGNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMESI 263 (485)
Q Consensus 215 g~g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~~ 263 (485)
.....+.+++|+|++++.++... .....|+.+++.++..+
T Consensus 226 ---~p~~r~~~~~dvA~~v~~l~s~~------~~~~tG~~i~vdGG~~~ 265 (267)
T 1iy8_A 226 ---NPSKRYGEAPEIAAVVAFLLSDD------ASYVNATVVPIDGGQSA 265 (267)
T ss_dssp ---CTTCSCBCHHHHHHHHHHHTSGG------GTTCCSCEEEESTTTTT
T ss_pred ---CCCCCCcCHHHHHHHHHHHcCcc------ccCCCCCEEEECCCccc
Confidence 12235789999999999885421 12267899999887544
|
| >1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.85 E-value=5.7e-21 Score=186.13 Aligned_cols=225 Identities=15% Similarity=0.106 Sum_probs=158.6
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhh---hcCCCeEEEEecCCCHHHHHHH
Q 047227 4 EENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEA---LRSGRAHYVSFDLRHKAQVLQA 80 (485)
Q Consensus 4 ~~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~Dl~d~~~l~~~ 80 (485)
..++|+||||||+|+||+++++.|+++| ++|++++|..........+ +... ....++.++.+|++|++++.++
T Consensus 15 ~l~~k~vlVTGasggIG~~la~~l~~~G-~~V~~~~r~~~~~~~~~~~---l~~~~~~~~~~~~~~~~~D~~~~~~v~~~ 90 (303)
T 1yxm_A 15 LLQGQVAIVTGGATGIGKAIVKELLELG-SNVVIASRKLERLKSAADE---LQANLPPTKQARVIPIQCNIRNEEEVNNL 90 (303)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHH---HHHTSCTTCCCCEEEEECCTTCHHHHHHH
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHH---HHhhccccCCccEEEEecCCCCHHHHHHH
Confidence 3456899999999999999999999999 6899998874321100000 0000 0235789999999999998887
Q ss_pred hc-------CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHHHhc----CCCEEEEecCccccccCCCCc
Q 047227 81 LQ-------GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDACAEL----KVKRLIYTSSPSVVFDGVHGI 142 (485)
Q Consensus 81 ~~-------~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~~~~----~v~r~V~~SS~~vy~~~~~~~ 142 (485)
++ ++|+|||+||... ..+++...+++|+.++.++++++... +.+++|++||.. +.
T Consensus 91 ~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~~-~~------ 163 (303)
T 1yxm_A 91 VKSTLDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMKEHGGSIVNIIVPT-KA------ 163 (303)
T ss_dssp HHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHCEEEEEECCCC-TT------
T ss_pred HHHHHHHcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCeEEEEEeec-cc------
Confidence 75 4999999999321 22345678999999999999997652 356899999976 31
Q ss_pred CCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCC--CCCC--hHHHHHHHHcCCCeEEec
Q 047227 143 INGNEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPG--DRLL--VPSLVAAARAGKSKFIIG 215 (485)
Q Consensus 143 ~~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~--~~~~--~~~~~~~~~~g~~~~~~g 215 (485)
+..+...|+.+|...+.+.+.++.+ .|++++++||+.++|+. .... .+.+......
T Consensus 164 ---------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~-------- 226 (303)
T 1yxm_A 164 ---------GFPLAVHSGAARAGVYNLTKSLALEWACSGIRINCVAPGVIYSQTAVENYGSWGQSFFEGSFQ-------- 226 (303)
T ss_dssp ---------CCTTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCCTGGGTTSGGGGGGGGTTGGG--------
T ss_pred ---------CCCcchhhHHHHHHHHHHHHHHHHHhcccCeEEEEEecCCcccchhhhhccccchHHHHHHHh--------
Confidence 1234568999999999998887654 48999999999999984 2110 0111111111
Q ss_pred CCCceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCCCc
Q 047227 216 DGNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMESI 263 (485)
Q Consensus 216 ~g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~~ 263 (485)
......+.+++|+|++++.++.... ....|+.+++.++..+
T Consensus 227 -~~p~~~~~~~~dvA~~i~~l~~~~~------~~~~G~~~~v~gG~~~ 267 (303)
T 1yxm_A 227 -KIPAKRIGVPEEVSSVVCFLLSPAA------SFITGQSVDVDGGRSL 267 (303)
T ss_dssp -GSTTSSCBCTHHHHHHHHHHHSGGG------TTCCSCEEEESTTGGG
T ss_pred -cCcccCCCCHHHHHHHHHHHhCccc------ccCCCcEEEECCCeec
Confidence 1122347899999999998865221 2267899999987644
|
| >1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.85 E-value=3.7e-20 Score=175.14 Aligned_cols=213 Identities=14% Similarity=0.098 Sum_probs=151.4
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCC-CHHHHHHHhc
Q 047227 4 EENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLR-HKAQVLQALQ 82 (485)
Q Consensus 4 ~~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~-d~~~l~~~~~ 82 (485)
..++|++|||||+|+||+++++.|+++| ++|++++|.... ... + ..+.++ +|+. +.+.+.+.+.
T Consensus 16 ~~~~k~vlVTGas~gIG~~~a~~l~~~G-~~V~~~~r~~~~----------~~~-~--~~~~~~-~D~~~~~~~~~~~~~ 80 (249)
T 1o5i_A 16 GIRDKGVLVLAASRGIGRAVADVLSQEG-AEVTICARNEEL----------LKR-S--GHRYVV-CDLRKDLDLLFEKVK 80 (249)
T ss_dssp CCTTCEEEEESCSSHHHHHHHHHHHHTT-CEEEEEESCHHH----------HHH-T--CSEEEE-CCTTTCHHHHHHHSC
T ss_pred ccCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEcCCHHH----------HHh-h--CCeEEE-eeHHHHHHHHHHHhc
Confidence 3567899999999999999999999999 689999886420 111 1 356677 9993 3445555555
Q ss_pred CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHH----HHHHHhcCCCEEEEecCccccccCCCCcCCCCCCCCC
Q 047227 83 GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNV----IDACAELKVKRLIYTSSPSVVFDGVHGIINGNEALPY 151 (485)
Q Consensus 83 ~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~l----l~a~~~~~v~r~V~~SS~~vy~~~~~~~~~~~e~~~~ 151 (485)
++|+|||+||... ..++++..+++|+.++.++ +..+++.+.+++|++||..++.
T Consensus 81 ~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~--------------- 145 (249)
T 1o5i_A 81 EVDILVLNAGGPKAGFFDELTNEDFKEAIDSLFLNMIKIVRNYLPAMKEKGWGRIVAITSFSVIS--------------- 145 (249)
T ss_dssp CCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS---------------
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEcchHhcC---------------
Confidence 8999999999322 2235667889999997665 4555666778999999988773
Q ss_pred CCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCChHHHHH-HHHcCCCeEEecCCCceeecccHH
Q 047227 152 PPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLLVPSLVA-AARAGKSKFIIGDGNNVYDFTYVA 227 (485)
Q Consensus 152 ~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~~~~~~~-~~~~g~~~~~~g~g~~~~~~i~v~ 227 (485)
+..+...|+.+|...+.+.+.++.+ .|++++++|||.++++......+.... ...... ....+.+++
T Consensus 146 ~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~---------p~~~~~~~~ 216 (249)
T 1o5i_A 146 PIENLYTSNSARMALTGFLKTLSFEVAPYGITVNCVAPGWTETERVKELLSEEKKKQVESQI---------PMRRMAKPE 216 (249)
T ss_dssp CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTHHHHSCHHHHHHHHTTS---------TTSSCBCHH
T ss_pred CCCCCchHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCCCccCcccccchhhHHHHHHhcC---------CCCCCcCHH
Confidence 1235578999999999998877643 689999999999998752111111111 222211 224588999
Q ss_pred HHHHHHHHHHHHhccccchhhccCCcEEEeeCCC
Q 047227 228 NVAHAHICAERALASEVTVAEKAAGQAYFVTNME 261 (485)
Q Consensus 228 D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~ 261 (485)
|+|++++.++.... ....|+.|++.++.
T Consensus 217 dvA~~i~~l~s~~~------~~~tG~~~~vdgG~ 244 (249)
T 1o5i_A 217 EIASVVAFLCSEKA------SYLTGQTIVVDGGL 244 (249)
T ss_dssp HHHHHHHHHHSGGG------TTCCSCEEEESTTC
T ss_pred HHHHHHHHHcCccc------cCCCCCEEEECCCc
Confidence 99999998865211 22568999998874
|
| >1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=3.7e-21 Score=182.87 Aligned_cols=224 Identities=13% Similarity=-0.002 Sum_probs=149.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcC---
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQG--- 83 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~--- 83 (485)
||++|||||+|+||+++++.|.++| ++|++++|..... + . . +.+|++|.+++.++++.
T Consensus 1 mk~vlVTGas~gIG~~~a~~l~~~G-~~V~~~~r~~~~~-----~---------~---~-~~~Dl~~~~~v~~~~~~~~~ 61 (257)
T 1fjh_A 1 MSIIVISGCATGIGAATRKVLEAAG-HQIVGIDIRDAEV-----I---------A---D-LSTAEGRKQAIADVLAKCSK 61 (257)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSSSSE-----E---------C---C-TTSHHHHHHHHHHHHTTCTT
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEeCCchhh-----c---------c---c-cccCCCCHHHHHHHHHHhCC
Confidence 3689999999999999999999999 6899998865311 0 0 1 56899999999998864
Q ss_pred -CCEEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHH----hcCCCEEEEecCccccccCCCCcCCCC----CC------
Q 047227 84 -AEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACA----ELKVKRLIYTSSPSVVFDGVHGIINGN----EA------ 148 (485)
Q Consensus 84 -~d~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~----~~~v~r~V~~SS~~vy~~~~~~~~~~~----e~------ 148 (485)
+|+|||+||.......++..+++|+.++.++.+++. +.+.+++|++||...+..........+ ++
T Consensus 62 ~id~lv~~Ag~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (257)
T 1fjh_A 62 GMDGLVLCAGLGPQTKVLGNVVSVNYFGATELMDAFLPALKKGHQPAAVVISSVASAHLAFDKNPLALALEAGEEAKARA 141 (257)
T ss_dssp CCSEEEECCCCCTTCSSHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGGSSCGGGCTTHHHHHHTCHHHHHH
T ss_pred CCCEEEECCCCCCCcccHHHHHHHhhHHHHHHHHHHHHHHhhcCCcEEEEECChhhhccccccchhhhhhcccchhhhhh
Confidence 599999999654345688899999999999998886 445689999999888731110000000 00
Q ss_pred ---CCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCChHH-HHHHHHcCCCeEEecCCCcee
Q 047227 149 ---LPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLLVPS-LVAAARAGKSKFIIGDGNNVY 221 (485)
Q Consensus 149 ---~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~~~~-~~~~~~~g~~~~~~g~g~~~~ 221 (485)
...+..+...|+.||...|.+.+.++.+ .|+++++++||.+.++........ ........ . .....
T Consensus 142 ~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~-----~--~~~~~ 214 (257)
T 1fjh_A 142 IVEHAGEQGGNLAYAGSKNALTVAVRKRAAAWGEAGVRLNTIAPGATETPLLQAGLQDPRYGESIAK-----F--VPPMG 214 (257)
T ss_dssp HHHTCCTTHHHHHHHHHHHHHHHHHHHTHHHHHHTTCEEEEEEECC--------------------------C--CCSTT
T ss_pred hhhcccCCCCccHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEeeCCCCCccchhhccchhHHHHHHh-----c--ccccC
Confidence 0011234568999999999999887654 689999999999988753321110 00000000 0 11223
Q ss_pred ecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCCC
Q 047227 222 DFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMES 262 (485)
Q Consensus 222 ~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~ 262 (485)
.+.+++|+|++++.++.... ....|+.+++.++..
T Consensus 215 ~~~~~~dvA~~~~~l~~~~~------~~~tG~~~~vdgG~~ 249 (257)
T 1fjh_A 215 RRAEPSEMASVIAFLMSPAA------SYVHGAQIVIDGGID 249 (257)
T ss_dssp SCCCTHHHHHHHHHHTSGGG------TTCCSCEEEESTTHH
T ss_pred CCCCHHHHHHHHHHHhCchh------cCCcCCEEEECCCcc
Confidence 47899999999998865211 126789999988643
|
| >3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.7e-20 Score=181.70 Aligned_cols=228 Identities=14% Similarity=0.008 Sum_probs=159.5
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc--
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ-- 82 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 82 (485)
.++|++|||||+|+||+++++.|+++| ++|++++|....... ....+ ..++.++.+|++|.+++.++++
T Consensus 14 l~gk~vlVTGas~gIG~~~a~~L~~~G-~~V~~~~r~~~~~~~-------~~~~~-~~~~~~~~~Dl~d~~~v~~~~~~~ 84 (291)
T 3rd5_A 14 FAQRTVVITGANSGLGAVTARELARRG-ATVIMAVRDTRKGEA-------AARTM-AGQVEVRELDLQDLSSVRRFADGV 84 (291)
T ss_dssp CTTCEEEEECCSSHHHHHHHHHHHHTT-CEEEEEESCHHHHHH-------HHTTS-SSEEEEEECCTTCHHHHHHHHHTC
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCC-CEEEEEECCHHHHHH-------HHHHh-cCCeeEEEcCCCCHHHHHHHHHhc
Confidence 457899999999999999999999999 699999987542111 11111 3578999999999999999987
Q ss_pred -CCCEEEEcCCCC-----CCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCccccccCCCCcCCCCCCCCCCCCCC
Q 047227 83 -GAEVVFHMAAPN-----SSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVVFDGVHGIINGNEALPYPPKHN 156 (485)
Q Consensus 83 -~~d~Vih~aa~~-----~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy~~~~~~~~~~~e~~~~~~~~~ 156 (485)
+.|+|||+||.. ...++++..+++|+.++.++++++.....+|+|++||...+...........+.. +..+.
T Consensus 85 ~~iD~lv~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~riv~isS~~~~~~~~~~~~~~~~~~--~~~~~ 162 (291)
T 3rd5_A 85 SGADVLINNAGIMAVPYALTVDGFESQIGTNHLGHFALTNLLLPRLTDRVVTVSSMAHWPGRINLEDLNWRSR--RYSPW 162 (291)
T ss_dssp CCEEEEEECCCCCSCCCCBCTTSCBHHHHHHTHHHHHHHHHHGGGEEEEEEEECCGGGTTCCCCSSCTTCSSS--CCCHH
T ss_pred CCCCEEEECCcCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhheeEeechhhccCCCCccccccccc--CCCCc
Confidence 579999999932 2345778899999999999999999887789999999888753222111111111 24566
Q ss_pred chHHHHHHHHHHHHHHHhCC---CC--ceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCceeecccHHHHHH
Q 047227 157 DFYSATKAEGEALVIKANGT---NG--LLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAH 231 (485)
Q Consensus 157 ~~Y~~sK~~~E~~~~~~~~~---~g--~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~D~a~ 231 (485)
..|+.||...+.+.+.++.+ .| +++.+++||.+..+........+...... .-..+-...++|+|+
T Consensus 163 ~~Y~~sK~a~~~~~~~la~e~~~~g~~i~v~~v~PG~v~T~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~A~ 233 (291)
T 3rd5_A 163 LAYSQSKLANLLFTSELQRRLTAAGSPLRALAAHPGYSHTNLQGASGRKLGDALMS---------AATRVVATDADFGAR 233 (291)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCSGGGSCC-----------------------------CHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHhhCCCCEEEEEeeCCCCccccccccchHHHHHHHH---------HHHHHHhCCHHHHHH
Confidence 78999999999998877654 34 99999999999876533221111111110 001122345999999
Q ss_pred HHHHHHHHhccccchhhccCCcEEEeeCC
Q 047227 232 AHICAERALASEVTVAEKAAGQAYFVTNM 260 (485)
Q Consensus 232 a~~~~~~~~~~~~~~~~~~~g~~ynv~~~ 260 (485)
+++.++.. +...|+.+++.++
T Consensus 234 ~~~~l~~~--------~~~~G~~~~vdgG 254 (291)
T 3rd5_A 234 QTLYAASQ--------DLPGDSFVGPRFG 254 (291)
T ss_dssp HHHHHHHS--------CCCTTCEEEETTS
T ss_pred HHHHHHcC--------CCCCCceeCCccc
Confidence 99988763 2367888887654
|
| >3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.85 E-value=2.8e-20 Score=176.75 Aligned_cols=223 Identities=15% Similarity=0.084 Sum_probs=160.3
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhh-hcCCCeEEEEecCCCHHHHHHHhc-
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEA-LRSGRAHYVSFDLRHKAQVLQALQ- 82 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~l~~~~~- 82 (485)
.++++||||||+|+||+++++.|+++| ++|.+.++..... ... ..... ....++.++.+|++|.+++.++++
T Consensus 11 ~~~k~vlITGas~giG~~ia~~l~~~G-~~v~~~~~~~~~~---~~~--~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~ 84 (256)
T 3ezl_A 11 MSQRIAYVTGGMGGIGTSICQRLHKDG-FRVVAGCGPNSPR---RVK--WLEDQKALGFDFYASEGNVGDWDSTKQAFDK 84 (256)
T ss_dssp --CEEEEETTTTSHHHHHHHHHHHHTT-EEEEEEECTTCSS---HHH--HHHHHHHTTCCCEEEECCTTCHHHHHHHHHH
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCC-CEEEEEeCCCHHH---HHH--HHHHHHhcCCeeEEEecCCCCHHHHHHHHHH
Confidence 456899999999999999999999999 6888877432211 000 11111 123578999999999998888775
Q ss_pred ------CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHH----HhcCCCEEEEecCccccccCCCCcCCC
Q 047227 83 ------GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDAC----AELKVKRLIYTSSPSVVFDGVHGIING 145 (485)
Q Consensus 83 ------~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~----~~~~v~r~V~~SS~~vy~~~~~~~~~~ 145 (485)
+.|+|||+||... ..++++..+++|+.++.++.+++ ++.+..++|++||...+.
T Consensus 85 ~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~--------- 155 (256)
T 3ezl_A 85 VKAEVGEIDVLVNNAGITRDVVFRKMTREDWQAVIDTNLTSLFNVTKQVIDGMVERGWGRIINISSVNGQK--------- 155 (256)
T ss_dssp HHHHTCCEEEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCCCGGG---------
T ss_pred HHHhcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcchhhcc---------
Confidence 5899999999322 23456779999999988886665 455677999999987763
Q ss_pred CCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCceee
Q 047227 146 NEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYD 222 (485)
Q Consensus 146 ~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~ 222 (485)
+..+...|+.+|...+.+.+.++.+ .|+++.+++||.+..+......+.....+....+ ...
T Consensus 156 ------~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~---------~~~ 220 (256)
T 3ezl_A 156 ------GQFGQTNYSTAKAGIHGFTMSLAQEVATKGVTVNTVSPGYIGTDMVKAIRPDVLEKIVATIP---------VRR 220 (256)
T ss_dssp ------SCSCCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHTSCHHHHHHHHHHST---------TSS
T ss_pred ------CCCCCcccHHHHHHHHHHHHHHHHHHHHhCCEEEEEEECcccCccccccCHHHHHHHHhcCC---------CCC
Confidence 2345678999999999988877644 5899999999999876433333444444433322 234
Q ss_pred cccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCCCc
Q 047227 223 FTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMESI 263 (485)
Q Consensus 223 ~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~~ 263 (485)
+.+++|+|++++.++... .....|+.+++.++..+
T Consensus 221 ~~~~~dva~~~~~l~s~~------~~~~tG~~i~vdgG~~~ 255 (256)
T 3ezl_A 221 LGSPDEIGSIVAWLASEE------SGFSTGADFSLNGGLHM 255 (256)
T ss_dssp CBCHHHHHHHHHHHHSGG------GTTCCSCEEEESTTSCC
T ss_pred CcCHHHHHHHHHHHhCCc------ccCCcCcEEEECCCEeC
Confidence 678999999999886422 12367999999887543
|
| >1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A | Back alignment and structure |
|---|
Probab=99.85 E-value=4e-20 Score=174.70 Aligned_cols=211 Identities=18% Similarity=0.098 Sum_probs=151.9
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc--
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ-- 82 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 82 (485)
.++|++|||||+|+||+++++.|.++| ++|++++|..... ..+..+.+|++|++++.++++
T Consensus 13 l~~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~----------------~~~~~~~~D~~~~~~~~~~~~~~ 75 (247)
T 1uzm_A 13 FVSRSVLVTGGNRGIGLAIAQRLAADG-HKVAVTHRGSGAP----------------KGLFGVEVDVTDSDAVDRAFTAV 75 (247)
T ss_dssp CCCCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESSSCCC----------------TTSEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEeCChHHH----------------HHhcCeeccCCCHHHHHHHHHHH
Confidence 456899999999999999999999999 6999998864311 111238899999998887765
Q ss_pred -----CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHHHh----cCCCEEEEecCccccccCCCCcCCCC
Q 047227 83 -----GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDACAE----LKVKRLIYTSSPSVVFDGVHGIINGN 146 (485)
Q Consensus 83 -----~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~~~----~~v~r~V~~SS~~vy~~~~~~~~~~~ 146 (485)
++|+|||+||... ..++++..+++|+.++.++.+++.. .+.+++|++||...+..
T Consensus 76 ~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~--------- 146 (247)
T 1uzm_A 76 EEHQGPVEVLVSNAGLSADAFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQRNKFGRMIFIGSVSGLWG--------- 146 (247)
T ss_dssp HHHHSSCSEEEEECSCCC-----CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCCC------------
T ss_pred HHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCEEEEECCHhhccC---------
Confidence 4899999999322 2346678899999999999888754 56789999999866531
Q ss_pred CCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCceeec
Q 047227 147 EALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDF 223 (485)
Q Consensus 147 e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~ 223 (485)
..+...|+.+|...|.+.+.++.+ .|+++++++||.+.++................. ....+
T Consensus 147 ------~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~---------p~~~~ 211 (247)
T 1uzm_A 147 ------IGNQANYAASKAGVIGMARSIARELSKANVTANVVAPGYIDTDMTRALDERIQQGALQFI---------PAKRV 211 (247)
T ss_dssp --------CCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHHSCHHHHHHHGGGC---------TTCSC
T ss_pred ------CCCChhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEeCCCcccchhhcCHHHHHHHHhcC---------CCCCC
Confidence 234578999999999988877643 589999999999976521111111111111111 12347
Q ss_pred ccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCCC
Q 047227 224 TYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMES 262 (485)
Q Consensus 224 i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~ 262 (485)
.+++|+|++++.++.... ....|+.+++.++..
T Consensus 212 ~~~~dvA~~~~~l~s~~~------~~~~G~~i~vdgG~~ 244 (247)
T 1uzm_A 212 GTPAEVAGVVSFLASEDA------SYISGAVIPVDGGMG 244 (247)
T ss_dssp BCHHHHHHHHHHHHSGGG------TTCCSCEEEESTTTT
T ss_pred cCHHHHHHHHHHHcCccc------cCCcCCEEEECCCcc
Confidence 899999999998865211 225789999988754
|
| >3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.85 E-value=9e-21 Score=182.22 Aligned_cols=222 Identities=14% Similarity=0.067 Sum_probs=159.5
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc--
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ-- 82 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 82 (485)
.++|++|||||+|+||+++++.|.++| ++|.+++|....... ....+ ..++.++.+|++|++++.++++
T Consensus 27 l~gk~vlVTGas~gIG~aia~~la~~G-~~V~~~~r~~~~~~~-------~~~~~-~~~~~~~~~Dv~d~~~v~~~~~~~ 97 (277)
T 3gvc_A 27 LAGKVAIVTGAGAGIGLAVARRLADEG-CHVLCADIDGDAADA-------AATKI-GCGAAACRVDVSDEQQIIAMVDAC 97 (277)
T ss_dssp CTTCEEEETTTTSTHHHHHHHHHHHTT-CEEEEEESSHHHHHH-------HHHHH-CSSCEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHH-------HHHHc-CCcceEEEecCCCHHHHHHHHHHH
Confidence 457899999999999999999999999 699999886432110 11111 4578999999999998887765
Q ss_pred -----CCCEEEEcCCCC-------CCCCchhhhHHHHHHHHHHHHHHHHh----cCCCEEEEecCccccccCCCCcCCCC
Q 047227 83 -----GAEVVFHMAAPN-------SSINNHKLHHSVNVEGTKNVIDACAE----LKVKRLIYTSSPSVVFDGVHGIINGN 146 (485)
Q Consensus 83 -----~~d~Vih~aa~~-------~~~~~~~~~~~~nv~~t~~ll~a~~~----~~v~r~V~~SS~~vy~~~~~~~~~~~ 146 (485)
+.|++||+||.. .+.++++..+++|+.++.++.+++.. .+..++|++||...+.
T Consensus 98 ~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~Iv~isS~~~~~---------- 167 (277)
T 3gvc_A 98 VAAFGGVDKLVANAGVVHLASLIDTTVEDFDRVIAINLRGAWLCTKHAAPRMIERGGGAIVNLSSLAGQV---------- 167 (277)
T ss_dssp HHHHSSCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTS----------
T ss_pred HHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhcc----------
Confidence 589999999932 23346678899999999999888754 4567899999977652
Q ss_pred CCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEec---C---C
Q 047227 147 EALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIG---D---G 217 (485)
Q Consensus 147 e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g---~---g 217 (485)
+..+...|+.+|...+.+.+.++.+ +|+++.+++||.+++|.. .. ......-.... . .
T Consensus 168 -----~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~----~~----~~~~~~~~~~~~~~~~~~~ 234 (277)
T 3gvc_A 168 -----AVGGTGAYGMSKAGIIQLSRITAAELRSSGIRSNTLLPAFVDTPMQ----QT----AMAMFDGALGAGGARSMIA 234 (277)
T ss_dssp -----CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHH----HH----HHTCC------CCHHHHHH
T ss_pred -----CCCCchhHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCccCchH----HH----hhhcchhhHHHHhhhhhhh
Confidence 2345678999999999998876643 689999999999987631 11 11000000000 0 0
Q ss_pred CceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCCCcc
Q 047227 218 NNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMESIK 264 (485)
Q Consensus 218 ~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~~t 264 (485)
.....+.+++|+|++++.++.... .-..|+.+++.+|...+
T Consensus 235 ~~~~r~~~pedvA~~v~~L~s~~a------~~itG~~i~vdGG~~~~ 275 (277)
T 3gvc_A 235 RLQGRMAAPEEMAGIVVFLLSDDA------SMITGTTQIADGGTIAA 275 (277)
T ss_dssp HHHSSCBCHHHHHHHHHHHHSGGG------TTCCSCEEEESTTGGGS
T ss_pred ccccCCCCHHHHHHHHHHHcCCcc------CCccCcEEEECCcchhc
Confidence 112357889999999998865221 22679999998876544
|
| >4e4y_A Short chain dehydrogenase family protein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; 1.80A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=99.85 E-value=2e-20 Score=176.46 Aligned_cols=210 Identities=14% Similarity=0.114 Sum_probs=157.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHh-cCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc--
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIR-YDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ-- 82 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~-~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 82 (485)
++|++|||||+|+||+++++.|.+ .| +.|.+.+|.... ....+.++.+|++|++++.++++
T Consensus 3 ~~k~vlITGas~gIG~~~a~~l~~~~g-~~v~~~~~~~~~---------------~~~~~~~~~~Dv~~~~~v~~~~~~~ 66 (244)
T 4e4y_A 3 AMANYLVTGGSKGIGKAVVELLLQNKN-HTVINIDIQQSF---------------SAENLKFIKADLTKQQDITNVLDII 66 (244)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHTTSTT-EEEEEEESSCCC---------------CCTTEEEEECCTTCHHHHHHHHHHT
T ss_pred CCCeEEEeCCCChHHHHHHHHHHhcCC-cEEEEecccccc---------------ccccceEEecCcCCHHHHHHHHHHH
Confidence 468999999999999999999999 67 688888876431 12457899999999999988876
Q ss_pred ---CCCEEEEcCCCC-------CCCCchhhhHHHHHHHHHHHHHHHHhcCC--CEEEEecCccccccCCCCcCCCCCCCC
Q 047227 83 ---GAEVVFHMAAPN-------SSINNHKLHHSVNVEGTKNVIDACAELKV--KRLIYTSSPSVVFDGVHGIINGNEALP 150 (485)
Q Consensus 83 ---~~d~Vih~aa~~-------~~~~~~~~~~~~nv~~t~~ll~a~~~~~v--~r~V~~SS~~vy~~~~~~~~~~~e~~~ 150 (485)
++|++||+||.. .+.++++..+++|+.++.++.+++...-. .++|++||...+.
T Consensus 67 ~~~~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~~sS~~~~~-------------- 132 (244)
T 4e4y_A 67 KNVSFDGIFLNAGILIKGSIFDIDIESIKKVLDLNVWSSIYFIKGLENNLKVGASIVFNGSDQCFI-------------- 132 (244)
T ss_dssp TTCCEEEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHTGGGEEEEEEEEEECCGGGTC--------------
T ss_pred HhCCCCEEEECCccCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHhccCcEEEEECCHHHcc--------------
Confidence 689999999932 12345677899999999999999876532 4899999987763
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHhC---CCCceEEEEecCCcccCCCCCChHH-----------HHHHHHcCCCeEEecC
Q 047227 151 YPPKHNDFYSATKAEGEALVIKANG---TNGLLTCCIRPSSIFGPGDRLLVPS-----------LVAAARAGKSKFIIGD 216 (485)
Q Consensus 151 ~~~~~~~~Y~~sK~~~E~~~~~~~~---~~g~~~~ilRp~~v~Gp~~~~~~~~-----------~~~~~~~g~~~~~~g~ 216 (485)
+..+...|+.||...+.+.+.++. .+|+++.+++||.+.++........ ...... .
T Consensus 133 -~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~---------~ 202 (244)
T 4e4y_A 133 -AKPNSFAYTLSKGAIAQMTKSLALDLAKYQIRVNTVCPGTVDTDLYRNLIQKYANNVGISFDEAQKQEE---------K 202 (244)
T ss_dssp -CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEESCBCCHHHHHHHHHHHHHHTCCHHHHHHHHH---------T
T ss_pred -CCCCCchhHHHHHHHHHHHHHHHHHHHHcCeEEEEEecCccCchhhHHHHHhhhhhcCCCHHHHHHHHh---------h
Confidence 234557899999999999988775 4689999999999987632111111 111111 2
Q ss_pred CCceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCC
Q 047227 217 GNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNME 261 (485)
Q Consensus 217 g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~ 261 (485)
......+.+++|+|++++.++.... .-..|+.+++.++.
T Consensus 203 ~~p~~r~~~p~dvA~~v~~l~s~~~------~~itG~~i~vdGG~ 241 (244)
T 4e4y_A 203 EFPLNRIAQPQEIAELVIFLLSDKS------KFMTGGLIPIDGGY 241 (244)
T ss_dssp TSTTSSCBCHHHHHHHHHHHHSGGG------TTCCSCEEEESTTG
T ss_pred cCCCCCCcCHHHHHHHHHHHhcCcc------ccccCCeEeECCCc
Confidence 2233468889999999998865322 22678999998764
|
| >3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.9e-20 Score=179.25 Aligned_cols=212 Identities=16% Similarity=0.132 Sum_probs=157.5
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc-
Q 047227 4 EENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ- 82 (485)
Q Consensus 4 ~~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~- 82 (485)
..++|+||||||+|+||+++++.|.++| ++|.+++|..... ...+..+.+|++|++++.++++
T Consensus 11 ~~~~k~vlVTGas~GIG~aia~~l~~~G-~~V~~~~r~~~~~---------------~~~~~~~~~Dv~~~~~v~~~~~~ 74 (269)
T 3vtz_A 11 EFTDKVAIVTGGSSGIGLAVVDALVRYG-AKVVSVSLDEKSD---------------VNVSDHFKIDVTNEEEVKEAVEK 74 (269)
T ss_dssp TTTTCEEEESSTTSHHHHHHHHHHHHTT-CEEEEEESCC--C---------------TTSSEEEECCTTCHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEeCCchhc---------------cCceeEEEecCCCHHHHHHHHHH
Confidence 3567999999999999999999999999 6899998865421 1256788999999998888775
Q ss_pred ------CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHHHh----cCCCEEEEecCccccccCCCCcCCC
Q 047227 83 ------GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDACAE----LKVKRLIYTSSPSVVFDGVHGIING 145 (485)
Q Consensus 83 ------~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~~~----~~v~r~V~~SS~~vy~~~~~~~~~~ 145 (485)
+.|+|||+||... ..++++..+++|+.++.++.+++.. .+..++|++||...+.
T Consensus 75 ~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~--------- 145 (269)
T 3vtz_A 75 TTKKYGRIDILVNNAGIEQYSPLHLTPTEIWRRIIDVNVNGSYLMAKYTIPVMLAIGHGSIINIASVQSYA--------- 145 (269)
T ss_dssp HHHHHSCCCEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS---------
T ss_pred HHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEECchhhcc---------
Confidence 6899999999322 2234567889999999999888654 4567999999988763
Q ss_pred CCCCCCCCCCCchHHHHHHHHHHHHHHHhCCC--CceEEEEecCCcccCCCCC-----------ChHHHHHHHHcCCCeE
Q 047227 146 NEALPYPPKHNDFYSATKAEGEALVIKANGTN--GLLTCCIRPSSIFGPGDRL-----------LVPSLVAAARAGKSKF 212 (485)
Q Consensus 146 ~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~--g~~~~ilRp~~v~Gp~~~~-----------~~~~~~~~~~~g~~~~ 212 (485)
+..+...|+.||+..|.+.+.++.+. ++++.+++||.+.++.... ...........
T Consensus 146 ------~~~~~~~Y~asKaa~~~l~~~la~e~~~~i~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 214 (269)
T 3vtz_A 146 ------ATKNAAAYVTSKHALLGLTRSVAIDYAPKIRCNAVCPGTIMTPMVIKAAKMEVGEDENAVERKIEEWGR----- 214 (269)
T ss_dssp ------BCTTCHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCCHHHHHHHHHHHCCSTTHHHHHHHHHHH-----
T ss_pred ------CCCCChhHHHHHHHHHHHHHHHHHHhcCCCEEEEEEECCCcCcchhhhhhccccccchhhHHHHHHHHh-----
Confidence 12456789999999999998876543 7999999999998763110 00111111111
Q ss_pred EecCCCceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCC
Q 047227 213 IIGDGNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNME 261 (485)
Q Consensus 213 ~~g~g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~ 261 (485)
......+.+++|+|++++.++.... .-..|+.+++.++.
T Consensus 215 ----~~p~~r~~~pedvA~~v~~L~s~~~------~~itG~~i~vdGG~ 253 (269)
T 3vtz_A 215 ----QHPMGRIGRPEEVAEVVAFLASDRS------SFITGACLTVDGGL 253 (269)
T ss_dssp ----HSTTSSCBCHHHHHHHHHHHHSGGG------TTCCSCEEEESTTG
T ss_pred ----cCCCCCCcCHHHHHHHHHHHhCCcc------CCCcCcEEEECCCc
Confidence 1233457889999999998865322 22679999998874
|
| >1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.84 E-value=3.4e-20 Score=175.04 Aligned_cols=194 Identities=14% Similarity=0.012 Sum_probs=140.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCC-ceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc--
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDM-FSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ-- 82 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 82 (485)
++|++|||||+|+||+++++.|+++|. ++|++++|..... +. +... ...++.++.+|++|++++.++++
T Consensus 2 ~~k~vlItGasggiG~~la~~l~~~g~~~~V~~~~r~~~~~----~~---l~~~-~~~~~~~~~~D~~~~~~~~~~~~~~ 73 (250)
T 1yo6_A 2 SPGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKA----TE---LKSI-KDSRVHVLPLTVTCDKSLDTFVSKV 73 (250)
T ss_dssp CCSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGC----HH---HHTC-CCTTEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEecCCchHHHHHHHHHHhcCCCcEEEEEecCHHHH----HH---HHhc-cCCceEEEEeecCCHHHHHHHHHHH
Confidence 357999999999999999999999993 3899998865421 11 1111 24578999999999998888876
Q ss_pred -------CCCEEEEcCCCCC--------CCCchhhhHHHHHHHHHHHHHHHHhc----------C-----CCEEEEecCc
Q 047227 83 -------GAEVVFHMAAPNS--------SINNHKLHHSVNVEGTKNVIDACAEL----------K-----VKRLIYTSSP 132 (485)
Q Consensus 83 -------~~d~Vih~aa~~~--------~~~~~~~~~~~nv~~t~~ll~a~~~~----------~-----v~r~V~~SS~ 132 (485)
++|+|||+||... ..++++..+++|+.++.++++++... + .+++|++||.
T Consensus 74 ~~~~g~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iv~isS~ 153 (250)
T 1yo6_A 74 GEIVGSDGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVVLLTQKLLPLLKNAASKESGDQLSVSRAAVITISSG 153 (250)
T ss_dssp HHHHGGGCCCEEEECCCCCCCBCTTSCCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHSSCSSCCCTTTCEEEEECCG
T ss_pred HHhcCCCCCcEEEECCcccCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccccCCCcccCCCcEEEEeccC
Confidence 7999999999432 22345678999999999998887653 4 6799999998
Q ss_pred cccccCCCCcCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhCCC---CceEEEEecCCcccCCCCCChHHHHHHHHcCC
Q 047227 133 SVVFDGVHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANGTN---GLLTCCIRPSSIFGPGDRLLVPSLVAAARAGK 209 (485)
Q Consensus 133 ~vy~~~~~~~~~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~ 209 (485)
..+..... .+ .+..+...|+.+|+..|.+.+.++.+. |++++++||+.+.++....
T Consensus 154 ~~~~~~~~-----~~---~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~------------- 212 (250)
T 1yo6_A 154 LGSITDNT-----SG---SAQFPVLAYRMSKAAINMFGRTLAVDLKDDNVLVVNFCPGWVQTNLGGK------------- 212 (250)
T ss_dssp GGCSTTCC-----ST---TSSSCBHHHHHHHHHHHHHHHHHHHHTGGGTCEEEEEECCCC--------------------
T ss_pred ccccCCcc-----cc---cccCCccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEcCCceecCCCCC-------------
Confidence 77642210 01 012467789999999999998877554 8999999999997763211
Q ss_pred CeEEecCCCceeecccHHHHHHHHHHHHHH
Q 047227 210 SKFIIGDGNNVYDFTYVANVAHAHICAERA 239 (485)
Q Consensus 210 ~~~~~g~g~~~~~~i~v~D~a~a~~~~~~~ 239 (485)
..+++++|+|++++.++..
T Consensus 213 -----------~~~~~~~~~a~~~~~~~~~ 231 (250)
T 1yo6_A 213 -----------NAALTVEQSTAELISSFNK 231 (250)
T ss_dssp -----------------HHHHHHHHHHHTT
T ss_pred -----------CCCCCHHHHHHHHHHHHhc
Confidence 1357899999999988763
|
| >3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.3e-20 Score=178.44 Aligned_cols=234 Identities=15% Similarity=0.123 Sum_probs=161.6
Q ss_pred CCCCCCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHH
Q 047227 1 MSGEENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQA 80 (485)
Q Consensus 1 M~~~~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~ 80 (485)
|+-..++|++|||||+|+||+++++.|.++| ++|.+.+|..........+ +........+..+.+|++|++++.++
T Consensus 4 m~~~l~~k~~lVTGas~gIG~aia~~l~~~G-~~V~~~~r~~~~~~~~~~~---l~~~~~~~~~~~~~~D~~~~~~~~~~ 79 (267)
T 3t4x_A 4 MHMQLKGKTALVTGSTAGIGKAIATSLVAEG-ANVLINGRREENVNETIKE---IRAQYPDAILQPVVADLGTEQGCQDV 79 (267)
T ss_dssp CCCCCTTCEEEETTCSSHHHHHHHHHHHHTT-CEEEEEESSHHHHHHHHHH---HHHHCTTCEEEEEECCTTSHHHHHHH
T ss_pred cccccCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHH---HHhhCCCceEEEEecCCCCHHHHHHH
Confidence 4444567899999999999999999999999 6999998875421110000 11111134678899999999998888
Q ss_pred hc---CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHH----HhcCCCEEEEecCccccccCCCCcCCCC
Q 047227 81 LQ---GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDAC----AELKVKRLIYTSSPSVVFDGVHGIINGN 146 (485)
Q Consensus 81 ~~---~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~----~~~~v~r~V~~SS~~vy~~~~~~~~~~~ 146 (485)
++ +.|++||+||... ..++++..+++|+.++.++.+++ ++.+..++|++||...+.
T Consensus 80 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~---------- 149 (267)
T 3t4x_A 80 IEKYPKVDILINNLGIFEPVEYFDIPDEDWFKLFEVNIMSGVRLTRSYLKKMIERKEGRVIFIASEAAIM---------- 149 (267)
T ss_dssp HHHCCCCSEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTEEEEEEECCGGGTS----------
T ss_pred HHhcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCEEEEEcchhhcc----------
Confidence 76 5899999999322 22355667999999977776654 445667999999987762
Q ss_pred CCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCC-----------ChHHHHHHHHcCCCeE
Q 047227 147 EALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRL-----------LVPSLVAAARAGKSKF 212 (485)
Q Consensus 147 e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~-----------~~~~~~~~~~~g~~~~ 212 (485)
+..+...|+.+|+..+.+.+.++.+ .|+++.+++||.+..+.... .............
T Consensus 150 -----~~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 221 (267)
T 3t4x_A 150 -----PSQEMAHYSATKTMQLSLSRSLAELTTGTNVTVNTIMPGSTLTEGVETMLNSLYPNEQLTIEEAEKRFMKEN--- 221 (267)
T ss_dssp -----CCTTCHHHHHHHHHHHHHHHHHHHHTTTSEEEEEEEEECCBCCHHHHHHHHHSSTTSCCCHHHHHHHHHHHH---
T ss_pred -----CCCcchHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCeecCccHHHHHhhcCcccCCCHHHHHHHHhhcc---
Confidence 2345678999999999999887653 47999999999988652110 0011111111100
Q ss_pred EecCCCceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCCCcc
Q 047227 213 IIGDGNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMESIK 264 (485)
Q Consensus 213 ~~g~g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~~t 264 (485)
........+.+++|+|++++.++.... .-..|+.+++.+|...+
T Consensus 222 --~~~~~~~r~~~pedvA~~v~fL~s~~~------~~itG~~i~vdGG~~~s 265 (267)
T 3t4x_A 222 --RPTSIIQRLIRPEEIAHLVTFLSSPLS------SAINGSALRIDGGLVRS 265 (267)
T ss_dssp --CTTCSSCSCBCTHHHHHHHHHHHSGGG------TTCCSCEEEESTTCSCS
T ss_pred --CCcccccCccCHHHHHHHHHHHcCccc------cCccCCeEEECCCcccc
Confidence 011123568899999999998865222 22679999998876544
|
| >2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.84 E-value=3.7e-20 Score=178.80 Aligned_cols=219 Identities=13% Similarity=0.056 Sum_probs=158.3
Q ss_pred CCCCEEEEEcCC--CchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhh-cCCCeEEEEecCCCHHHHHHHh
Q 047227 5 ENERLCVVTGGR--GFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEAL-RSGRAHYVSFDLRHKAQVLQAL 81 (485)
Q Consensus 5 ~~~~~iLVtGgt--G~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~ 81 (485)
.++|++|||||+ |+||+++++.|.++| ++|++++|... . ... ..... ..+++.++.+|++|++++.+++
T Consensus 19 l~~k~vlVTGas~~~gIG~~ia~~l~~~G-~~V~~~~r~~~-~---~~~---~~~l~~~~~~~~~~~~Dl~~~~~v~~~~ 90 (285)
T 2p91_A 19 LEGKRALITGVANERSIAYGIAKSFHREG-AQLAFTYATPK-L---EKR---VREIAKGFGSDLVVKCDVSLDEDIKNLK 90 (285)
T ss_dssp TTTCEEEECCCSSTTSHHHHHHHHHHHTT-CEEEEEESSGG-G---HHH---HHHHHHHTTCCCEEECCTTCHHHHHHHH
T ss_pred cCCCEEEEECCCCCCcHHHHHHHHHHHcC-CEEEEEeCCHH-H---HHH---HHHHHHhcCCeEEEEcCCCCHHHHHHHH
Confidence 456899999999 999999999999999 68999988642 0 001 11111 1134788999999999888877
Q ss_pred c-------CCCEEEEcCCCCC-----------CCCchhhhHHHHHHHHHHHHHHHHhcC---CCEEEEecCccccccCCC
Q 047227 82 Q-------GAEVVFHMAAPNS-----------SINNHKLHHSVNVEGTKNVIDACAELK---VKRLIYTSSPSVVFDGVH 140 (485)
Q Consensus 82 ~-------~~d~Vih~aa~~~-----------~~~~~~~~~~~nv~~t~~ll~a~~~~~---v~r~V~~SS~~vy~~~~~ 140 (485)
+ ++|+|||+||... +.++++..+++|+.++.++.+++...- .+++|++||...+.
T Consensus 91 ~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~---- 166 (285)
T 2p91_A 91 KFLEENWGSLDIIVHSIAYAPKEEFKGGVIDTSREGFKIAMDISVYSLIALTRELLPLMEGRNGAIVTLSYYGAEK---- 166 (285)
T ss_dssp HHHHHHTSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGGTTSCCEEEEEECGGGTS----
T ss_pred HHHHHHcCCCCEEEECCCCCCcccCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCEEEEEccchhcc----
Confidence 5 5899999999432 223566789999999999999998753 26999999976652
Q ss_pred CcCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCC--hHHHHHHHHcCCCeEEec
Q 047227 141 GIINGNEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLL--VPSLVAAARAGKSKFIIG 215 (485)
Q Consensus 141 ~~~~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~--~~~~~~~~~~g~~~~~~g 215 (485)
+..+...|+.+|...+.+.+.++.+ .|+++++++||.++++..... .+.+........+
T Consensus 167 -----------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~p----- 230 (285)
T 2p91_A 167 -----------VVPHYNVMGIAKAALESTVRYLAYDIAKHGHRINAISAGPVKTLAAYSITGFHLLMEHTTKVNP----- 230 (285)
T ss_dssp -----------BCTTTTHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCSCC--CTTHHHHHHHHHHHST-----
T ss_pred -----------CCCCccHHHHHHHHHHHHHHHHHHHhcccCcEEEEEEeCcccCchhhcccchHHHHHHHHhcCC-----
Confidence 1234568999999999998877643 589999999999999864321 2333333322221
Q ss_pred CCCceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCC
Q 047227 216 DGNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNME 261 (485)
Q Consensus 216 ~g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~ 261 (485)
...+.+++|+|++++.++.... ....|+.|++.++.
T Consensus 231 ----~~~~~~~~dva~~~~~l~s~~~------~~~tG~~~~vdgg~ 266 (285)
T 2p91_A 231 ----FGKPITIEDVGDTAVFLCSDWA------RAITGEVVHVDNGY 266 (285)
T ss_dssp ----TSSCCCHHHHHHHHHHHTSGGG------TTCCSCEEEESTTG
T ss_pred ----CCCCcCHHHHHHHHHHHcCCcc------cCCCCCEEEECCCc
Confidence 1236789999999998864211 22568899998864
|
| >3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.3e-20 Score=179.50 Aligned_cols=225 Identities=15% Similarity=0.072 Sum_probs=153.6
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc--
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ-- 82 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 82 (485)
.++|++|||||+|+||+++++.|+++| ++|.+++|....... +...+ ..++.++.+|++|.+++.++++
T Consensus 7 l~~k~vlITGas~gIG~~~a~~l~~~G-~~V~~~~r~~~~~~~-------~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~ 77 (261)
T 3n74_A 7 LEGKVALITGAGSGFGEGMAKRFAKGG-AKVVIVDRDKAGAER-------VAGEI-GDAALAVAADISKEADVDAAVEAA 77 (261)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHH-------HHHHH-CTTEEEEECCTTSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEcCCHHHHHH-------HHHHh-CCceEEEEecCCCHHHHHHHHHHH
Confidence 456899999999999999999999999 689999887542110 11111 4578999999999998888775
Q ss_pred -----CCCEEEEcCCCCC--------CCCchhhhHHHHHHHHHHHHHHHHhc----C----CCEEEEecCccccccCCCC
Q 047227 83 -----GAEVVFHMAAPNS--------SINNHKLHHSVNVEGTKNVIDACAEL----K----VKRLIYTSSPSVVFDGVHG 141 (485)
Q Consensus 83 -----~~d~Vih~aa~~~--------~~~~~~~~~~~nv~~t~~ll~a~~~~----~----v~r~V~~SS~~vy~~~~~~ 141 (485)
+.|+|||+|+... ..++++..+++|+.++.++.+++... + ..++|++||...+.
T Consensus 78 ~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~iv~isS~~~~~----- 152 (261)
T 3n74_A 78 LSKFGKVDILVNNAGIGHKPQNAELVEPEEFDRIVGVNVRGVYLMTSKLIPHFKENGAKGQECVILNVASTGAGR----- 152 (261)
T ss_dssp HHHHSCCCEEEECCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTTTTS-----
T ss_pred HHhcCCCCEEEECCccCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCchhhcC-----
Confidence 6899999999432 23456678999999999988877543 1 34799999977652
Q ss_pred cCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCC
Q 047227 142 IINGNEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGN 218 (485)
Q Consensus 142 ~~~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~ 218 (485)
+......|+.+|+..+.+.+.++.+ .++++.+++|+.+.++........... .......+..
T Consensus 153 ----------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~-----~~~~~~~~~~ 217 (261)
T 3n74_A 153 ----------PRPNLAWYNATKGWVVSVTKALAIELAPAKIRVVALNPVAGETPLLTTFMGEDSE-----EIRKKFRDSI 217 (261)
T ss_dssp ----------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC------------------------------C
T ss_pred ----------CCCCccHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccChhhhhhcccCcH-----HHHHHHhhcC
Confidence 2344567999999999998887654 589999999999988753322111000 0011112233
Q ss_pred ceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCCCcc
Q 047227 219 NVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMESIK 264 (485)
Q Consensus 219 ~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~~t 264 (485)
....+++++|+|++++.++... .....|+.+++.++..++
T Consensus 218 ~~~~~~~~~dva~~~~~l~s~~------~~~itG~~i~vdgG~~~~ 257 (261)
T 3n74_A 218 PMGRLLKPDDLAEAAAFLCSPQ------ASMITGVALDVDGGRSIG 257 (261)
T ss_dssp TTSSCCCHHHHHHHHHHHTSGG------GTTCCSCEEEESTTTTC-
T ss_pred CcCCCcCHHHHHHHHHHHcCCc------ccCcCCcEEEecCCcccC
Confidence 4456899999999999886421 223679999999887654
|
| >3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.3e-20 Score=182.77 Aligned_cols=223 Identities=17% Similarity=0.101 Sum_probs=160.9
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhh--cCCCeEEEEecCCCHHHHHHHhc
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEAL--RSGRAHYVSFDLRHKAQVLQALQ 82 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~Dl~d~~~l~~~~~ 82 (485)
.++|++|||||+|+||+++++.|.++| ++|.+.++...... .+. ..... ...++.++.+|++|++++.++++
T Consensus 47 l~~k~vlVTGas~GIG~aia~~la~~G-~~V~~~~~~~~~~~--~~~---~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~ 120 (294)
T 3r3s_A 47 LKDRKALVTGGDSGIGRAAAIAYAREG-ADVAINYLPAEEED--AQQ---VKALIEECGRKAVLLPGDLSDESFARSLVH 120 (294)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEECCGGGHHH--HHH---HHHHHHHTTCCEEECCCCTTSHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCCcchhH--HHH---HHHHHHHcCCcEEEEEecCCCHHHHHHHHH
Confidence 356899999999999999999999999 68988877532100 000 11111 13578899999999998877764
Q ss_pred -------CCCEEEEcCCCCC--------CCCchhhhHHHHHHHHHHHHHHHHhcCC--CEEEEecCccccccCCCCcCCC
Q 047227 83 -------GAEVVFHMAAPNS--------SINNHKLHHSVNVEGTKNVIDACAELKV--KRLIYTSSPSVVFDGVHGIING 145 (485)
Q Consensus 83 -------~~d~Vih~aa~~~--------~~~~~~~~~~~nv~~t~~ll~a~~~~~v--~r~V~~SS~~vy~~~~~~~~~~ 145 (485)
+.|++||+||... +.++++..+++|+.++.++.+++...-. .++|++||...+.
T Consensus 121 ~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~Iv~isS~~~~~--------- 191 (294)
T 3r3s_A 121 KAREALGGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPKGASIITTSSIQAYQ--------- 191 (294)
T ss_dssp HHHHHHTCCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECCGGGTS---------
T ss_pred HHHHHcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECChhhcc---------
Confidence 5899999999422 2345678899999999999999987643 3999999988763
Q ss_pred CCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCC--CCChHHHHHHHHcCCCeEEecCCCce
Q 047227 146 NEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGD--RLLVPSLVAAARAGKSKFIIGDGNNV 220 (485)
Q Consensus 146 ~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~--~~~~~~~~~~~~~g~~~~~~g~g~~~ 220 (485)
+..+...|+.+|...+.+.+.++.+ .|+++.+++||.++++.. ....... ..........
T Consensus 192 ------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~~~~~~~---------~~~~~~~~p~ 256 (294)
T 3r3s_A 192 ------PSPHLLDYAATKAAILNYSRGLAKQVAEKGIRVNIVAPGPIWTALQISGGQTQDK---------IPQFGQQTPM 256 (294)
T ss_dssp ------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSHHHHTTTSCGGG---------STTTTTTSTT
T ss_pred ------CCCCchHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCcCccccccccCCCHHH---------HHHHHhcCCC
Confidence 1245678999999999998887654 489999999999987631 0000000 0011122334
Q ss_pred eecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCCCc
Q 047227 221 YDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMESI 263 (485)
Q Consensus 221 ~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~~ 263 (485)
..+..++|+|++++.++.... .-..|+++++.+|..+
T Consensus 257 ~r~~~p~dvA~~v~~L~s~~~------~~itG~~i~vdGG~~l 293 (294)
T 3r3s_A 257 KRAGQPAELAPVYVYLASQES------SYVTAEVHGVCGGEHL 293 (294)
T ss_dssp SSCBCGGGGHHHHHHHHSGGG------TTCCSCEEEESTTCCC
T ss_pred CCCcCHHHHHHHHHHHhCccc------cCCCCCEEEECCCccC
Confidence 567889999999998865222 2267999999887654
|
| >1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.84 E-value=1.8e-20 Score=177.82 Aligned_cols=221 Identities=18% Similarity=0.177 Sum_probs=154.7
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc-
Q 047227 4 EENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ- 82 (485)
Q Consensus 4 ~~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~- 82 (485)
..++|++|||||+|+||+++++.|.++| ++|++++|...... + ....+ ..++.++.+|++|++++.++++
T Consensus 3 ~l~~k~vlVTGas~giG~~ia~~l~~~G-~~V~~~~r~~~~~~----~---~~~~~-~~~~~~~~~D~~~~~~v~~~~~~ 73 (253)
T 1hxh_A 3 RLQGKVALVTGGASGVGLEVVKLLLGEG-AKVAFSDINEAAGQ----Q---LAAEL-GERSMFVRHDVSSEADWTLVMAA 73 (253)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEECSCHHHHH----H---HHHHH-CTTEEEECCCTTCHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHH----H---HHHHc-CCceEEEEccCCCHHHHHHHHHH
Confidence 4567899999999999999999999999 68999988643110 0 11112 3578899999999998887765
Q ss_pred ------CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHH----HHHhcCCCEEEEecCccccccCCCCcCCC
Q 047227 83 ------GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVID----ACAELKVKRLIYTSSPSVVFDGVHGIING 145 (485)
Q Consensus 83 ------~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~----a~~~~~v~r~V~~SS~~vy~~~~~~~~~~ 145 (485)
++|+|||+||... ..++++..+++|+.++.++.+ .+++.+ +++|++||...+.
T Consensus 74 ~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~-g~iv~isS~~~~~--------- 143 (253)
T 1hxh_A 74 VQRRLGTLNVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETG-GSIINMASVSSWL--------- 143 (253)
T ss_dssp HHHHHCSCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTC-EEEEEECCGGGTS---------
T ss_pred HHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhcHHHHHHHHHHHHHHHHcC-CEEEEEcchhhcC---------
Confidence 3799999999422 223567788999887766655 455566 7999999987763
Q ss_pred CCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---C--CceEEEEecCCcccCCCCCCh-HHHHHH-HHcCCCeEEecCCC
Q 047227 146 NEALPYPPKHNDFYSATKAEGEALVIKANGT---N--GLLTCCIRPSSIFGPGDRLLV-PSLVAA-ARAGKSKFIIGDGN 218 (485)
Q Consensus 146 ~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~--g~~~~ilRp~~v~Gp~~~~~~-~~~~~~-~~~g~~~~~~g~g~ 218 (485)
+..+...|+.+|...|.+.+.++.+ . |++++++||+.++++...... +..... ..... ...
T Consensus 144 ------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~------~~~ 211 (253)
T 1hxh_A 144 ------PIEQYAGYSASKAAVSALTRAAALSCRKQGYAIRVNSIHPDGIYTPMMQASLPKGVSKEMVLHDP------KLN 211 (253)
T ss_dssp ------CCTTBHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEESEECCHHHHHHSCTTCCHHHHBCBT------TTB
T ss_pred ------CCCCCccHHHHHHHHHHHHHHHHHHhhhcCCCeEEEEEEeCCccCchhhhccchhhhHHHHhhhh------ccC
Confidence 1235678999999999999887654 3 899999999999987311000 000000 00000 011
Q ss_pred ceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCC
Q 047227 219 NVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNME 261 (485)
Q Consensus 219 ~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~ 261 (485)
....+.+++|+|++++.++.... ....|+.+++.++.
T Consensus 212 p~~~~~~~~dvA~~~~~l~s~~~------~~~tG~~~~vdgG~ 248 (253)
T 1hxh_A 212 RAGRAYMPERIAQLVLFLASDES------SVMSGSELHADNSI 248 (253)
T ss_dssp TTCCEECHHHHHHHHHHHHSGGG------TTCCSCEEEESSSC
T ss_pred ccCCCCCHHHHHHHHHHHcCccc------cCCCCcEEEECCCc
Confidence 22357899999999998865221 12568899998764
|
| >4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=5.3e-20 Score=175.97 Aligned_cols=220 Identities=20% Similarity=0.145 Sum_probs=158.7
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhh-hcCCCeEEEEecCCCHHHHHHHhc
Q 047227 4 EENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEA-LRSGRAHYVSFDLRHKAQVLQALQ 82 (485)
Q Consensus 4 ~~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~l~~~~~ 82 (485)
..+++++|||||+|+||+++++.|+++| ++|.+..+...... + ...... ....++.++.+|++|++++.++++
T Consensus 23 ~l~~k~vlVTGas~gIG~~la~~l~~~G-~~v~i~~~r~~~~~---~--~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~ 96 (267)
T 4iiu_A 23 NAMSRSVLVTGASKGIGRAIARQLAADG-FNIGVHYHRDAAGA---Q--ETLNAIVANGGNGRLLSFDVANREQCREVLE 96 (267)
T ss_dssp --CCCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESSCHHHH---H--HHHHHHHHTTCCEEEEECCTTCHHHHHHHHH
T ss_pred ccCCCEEEEECCCChHHHHHHHHHHHCC-CEEEEEeCCchHHH---H--HHHHHHHhcCCceEEEEecCCCHHHHHHHHH
Confidence 3456899999999999999999999999 57766554322110 0 011111 124678999999999998888775
Q ss_pred -------CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHHH-----hcCCCEEEEecCccccccCCCCcC
Q 047227 83 -------GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDACA-----ELKVKRLIYTSSPSVVFDGVHGII 143 (485)
Q Consensus 83 -------~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~~-----~~~v~r~V~~SS~~vy~~~~~~~~ 143 (485)
+.|+|||+||... +.++++..+++|+.++.++++++. +.+..++|++||...+.
T Consensus 97 ~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~------- 169 (267)
T 4iiu_A 97 HEIAQHGAWYGVVSNAGIARDAAFPALSNDDWDAVIHTNLDSFYNVIQPCIMPMIGARQGGRIITLSSVSGVM------- 169 (267)
T ss_dssp HHHHHHCCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCHHHHH-------
T ss_pred HHHHHhCCccEEEECCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEcchHhcc-------
Confidence 6999999999332 334667889999999999999874 44567999999987763
Q ss_pred CCCCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCce
Q 047227 144 NGNEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNV 220 (485)
Q Consensus 144 ~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~ 220 (485)
+..+...|+.+|...+.+.+.++.+ .|+++.+++||.+.++..... +..........+ .
T Consensus 170 --------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~-~~~~~~~~~~~p---------~ 231 (267)
T 4iiu_A 170 --------GNRGQVNYSAAKAGIIGATKALAIELAKRKITVNCIAPGLIDTGMIEME-ESALKEAMSMIP---------M 231 (267)
T ss_dssp --------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSTTCCCC-HHHHHHHHHTCT---------T
T ss_pred --------CCCCCchhHHHHHHHHHHHHHHHHHHhhcCeEEEEEEEeeecCCccccc-HHHHHHHHhcCC---------C
Confidence 1245678999999888877766543 489999999999998865433 333333333322 2
Q ss_pred eecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCC
Q 047227 221 YDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNM 260 (485)
Q Consensus 221 ~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~ 260 (485)
..+.+++|+|++++.++.... ....|+.+++.+|
T Consensus 232 ~~~~~~edva~~~~~L~s~~~------~~itG~~i~vdGG 265 (267)
T 4iiu_A 232 KRMGQAEEVAGLASYLMSDIA------GYVTRQVISINGG 265 (267)
T ss_dssp CSCBCHHHHHHHHHHHHSGGG------TTCCSCEEEESTT
T ss_pred CCCcCHHHHHHHHHHHhCCcc------cCccCCEEEeCCC
Confidence 347789999999998865322 2267899999775
|
| >3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 1.85A {Mycobacterium ulcerans} | Back alignment and structure |
|---|
Probab=99.84 E-value=4.7e-20 Score=175.29 Aligned_cols=217 Identities=17% Similarity=0.128 Sum_probs=158.1
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc--
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ-- 82 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 82 (485)
.++|++|||||+|+||+++++.|.++| ++|.+++|.... .... ...++.++.+|++|++++.++++
T Consensus 7 l~~k~vlVTGas~gIG~aia~~l~~~G-~~V~~~~r~~~~----------~~~~-~~~~~~~~~~D~~~~~~v~~~~~~~ 74 (257)
T 3tl3_A 7 IRDAVAVVTGGASGLGLATTKRLLDAG-AQVVVLDIRGED----------VVAD-LGDRARFAAADVTDEAAVASALDLA 74 (257)
T ss_dssp ---CEEEEETTTSHHHHHHHHHHHHHT-CEEEEEESSCHH----------HHHH-TCTTEEEEECCTTCHHHHHHHHHHH
T ss_pred ecCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEeCchHH----------HHHh-cCCceEEEECCCCCHHHHHHHHHHH
Confidence 456899999999999999999999999 699999884321 1111 14578999999999999888876
Q ss_pred ----CCCEEEEcCCCC-----------CCCCchhhhHHHHHHHHHHHHHHHHhc------------CCCEEEEecCcccc
Q 047227 83 ----GAEVVFHMAAPN-----------SSINNHKLHHSVNVEGTKNVIDACAEL------------KVKRLIYTSSPSVV 135 (485)
Q Consensus 83 ----~~d~Vih~aa~~-----------~~~~~~~~~~~~nv~~t~~ll~a~~~~------------~v~r~V~~SS~~vy 135 (485)
+.|++||+||.. .+.++++..+++|+.++.++.+++... +..++|++||...+
T Consensus 75 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~ 154 (257)
T 3tl3_A 75 ETMGTLRIVVNCAGTGNAIRVLSRDGVFSLAAFRKIVDINLVGSFNVLRLAAERIAKTEPVGPNAEERGVIINTASVAAF 154 (257)
T ss_dssp HHHSCEEEEEECGGGSHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCC--CCCCSEEEEEECCCC--
T ss_pred HHhCCCCEEEECCCCCCCcccccccccCCHHHHHHHHHHccHHHHHHHHHHHHHHHHhcccccccCCCcEEEEEcchhhc
Confidence 799999999932 344567889999999999999988753 23489999998775
Q ss_pred ccCCCCcCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeE
Q 047227 136 FDGVHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKF 212 (485)
Q Consensus 136 ~~~~~~~~~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~ 212 (485)
. +..+...|+.||...+.+.+.++.+ .|+++.+++||.+..+......+..........+.
T Consensus 155 ~---------------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~- 218 (257)
T 3tl3_A 155 D---------------GQIGQAAYSASKGGVVGMTLPIARDLASHRIRVMTIAPGLFDTPLLASLPEEARASLGKQVPH- 218 (257)
T ss_dssp C---------------CHHHHHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTC---CHHHHHHHHHTSSS-
T ss_pred C---------------CCCCCccHHHHHHHHHHHHHHHHHHhcccCcEEEEEEecCccChhhhhccHHHHHHHHhcCCC-
Confidence 2 1224568999999999888876643 58999999999998875443333333333332221
Q ss_pred EecCCCceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCCCcc
Q 047227 213 IIGDGNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMESIK 264 (485)
Q Consensus 213 ~~g~g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~~t 264 (485)
...+.+++|+|++++.++. .+...|+.+++.++..+.
T Consensus 219 -------~~r~~~p~dva~~v~~l~s--------~~~itG~~i~vdGG~~~~ 255 (257)
T 3tl3_A 219 -------PSRLGNPDEYGALAVHIIE--------NPMLNGEVIRLDGAIRMA 255 (257)
T ss_dssp -------SCSCBCHHHHHHHHHHHHH--------CTTCCSCEEEESTTC---
T ss_pred -------CCCccCHHHHHHHHHHHhc--------CCCCCCCEEEECCCccCC
Confidence 1347889999999999876 233789999998876543
|
| >2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.84 E-value=8.3e-20 Score=175.45 Aligned_cols=220 Identities=14% Similarity=0.084 Sum_probs=155.5
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc--
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ-- 82 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 82 (485)
.++|++|||||+|+||+++++.|+++| ++|++++|...... + .........++.++.+|++|++++.++++
T Consensus 27 l~~k~vlVTGas~gIG~aia~~L~~~G-~~V~~~~r~~~~~~----~--~~~~l~~~~~~~~~~~Dv~d~~~v~~~~~~~ 99 (276)
T 2b4q_A 27 LAGRIALVTGGSRGIGQMIAQGLLEAG-ARVFICARDAEACA----D--TATRLSAYGDCQAIPADLSSEAGARRLAQAL 99 (276)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEECSCHHHHH----H--HHHHHTTSSCEEECCCCTTSHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCC-CEEEEEeCCHHHHH----H--HHHHHHhcCceEEEEeeCCCHHHHHHHHHHH
Confidence 346899999999999999999999999 69999988643210 0 01111112368889999999998887775
Q ss_pred -----CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHHH----hcCC----CEEEEecCccccccCCCCc
Q 047227 83 -----GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDACA----ELKV----KRLIYTSSPSVVFDGVHGI 142 (485)
Q Consensus 83 -----~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~~----~~~v----~r~V~~SS~~vy~~~~~~~ 142 (485)
++|+|||+||... ..++++..+++|+.++.++.+++. +.+. +++|++||...+..
T Consensus 100 ~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~~~g~iV~isS~~~~~~----- 174 (276)
T 2b4q_A 100 GELSARLDILVNNAGTSWGAALESYPVSGWEKVMQLNVTSVFSCIQQLLPLLRRSASAENPARVINIGSVAGISA----- 174 (276)
T ss_dssp HHHCSCCSEEEECCCCCCCCCTTSCCSHHHHHHHHHHTHHHHHHHHHHHHHHHHHCCSSSCEEEEEECCGGGTCC-----
T ss_pred HHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhccCCCCCCEEEEECCHHHcCC-----
Confidence 6899999999321 234567889999999988877764 3343 79999999877631
Q ss_pred CCCCCCCCCCCCCCc-hHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCChHHHHHHHHc--CCCeEEecC
Q 047227 143 INGNEALPYPPKHND-FYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLLVPSLVAAARA--GKSKFIIGD 216 (485)
Q Consensus 143 ~~~~e~~~~~~~~~~-~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~--g~~~~~~g~ 216 (485)
..... .|+.+|...|.+.+.++.+ .|+++++++||.+..+............... ..
T Consensus 175 ----------~~~~~~~Y~asK~a~~~~~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~------- 237 (276)
T 2b4q_A 175 ----------MGEQAYAYGPSKAALHQLSRMLAKELVGEHINVNVIAPGRFPSRMTRHIANDPQALEADSASI------- 237 (276)
T ss_dssp ----------CCCSCTTHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCSTTTHHHHHCHHHHHHHHHTS-------
T ss_pred ----------CCCCccccHHHHHHHHHHHHHHHHHhcccCeEEEEEEeccCcCcchhhcchhHHHHHHhhcCC-------
Confidence 12234 7999999999999887643 5899999999999877432111111111111 11
Q ss_pred CCceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCC
Q 047227 217 GNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNME 261 (485)
Q Consensus 217 g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~ 261 (485)
....+.+++|+|++++.++.... ....|+.+++.++.
T Consensus 238 --p~~r~~~p~dvA~~v~~l~s~~~------~~~tG~~i~vdGG~ 274 (276)
T 2b4q_A 238 --PMGRWGRPEEMAALAISLAGTAG------AYMTGNVIPIDGGF 274 (276)
T ss_dssp --TTSSCCCHHHHHHHHHHHHSGGG------TTCCSCEEEESTTT
T ss_pred --CCCCcCCHHHHHHHHHHHhCccc------cCCCCCEEEeCCCc
Confidence 12347899999999998865321 22678999998764
|
| >1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.84 E-value=1.1e-19 Score=173.66 Aligned_cols=220 Identities=18% Similarity=0.098 Sum_probs=156.8
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhh--hcCCCeEEEEecCCCHHHHHHHhc
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEA--LRSGRAHYVSFDLRHKAQVLQALQ 82 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~Dl~d~~~l~~~~~ 82 (485)
.++|++|||||+|+||+++++.|+++| ++|++++|....... ..... ....++.++.+|++|++++.++++
T Consensus 19 l~~k~~lVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~------~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~ 91 (267)
T 1vl8_A 19 LRGRVALVTGGSRGLGFGIAQGLAEAG-CSVVVASRNLEEASE------AAQKLTEKYGVETMAFRCDVSNYEEVKKLLE 91 (267)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHH------HHHHHHHHHCCCEEEEECCTTCHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHH------HHHHHHHhcCCeEEEEEcCCCCHHHHHHHHH
Confidence 457899999999999999999999999 689999886432110 01110 113568889999999998887775
Q ss_pred -------CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHHH----hcCCCEEEEecCccc-cccCCCCcC
Q 047227 83 -------GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDACA----ELKVKRLIYTSSPSV-VFDGVHGII 143 (485)
Q Consensus 83 -------~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~~----~~~v~r~V~~SS~~v-y~~~~~~~~ 143 (485)
++|+|||+||... ..++++..+++|+.++.++.+++. +.+.+++|++||..+ +.
T Consensus 92 ~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~------- 164 (267)
T 1vl8_A 92 AVKEKFGKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESDNPSIINIGSLTVEEV------- 164 (267)
T ss_dssp HHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCSSCEEEEECCGGGTCC-------
T ss_pred HHHHHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEECCcchhcc-------
Confidence 6899999999432 223456788999999999988774 456789999999763 21
Q ss_pred CCCCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCCh--HHHHHHHHcCCCeEEecCCC
Q 047227 144 NGNEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLLV--PSLVAAARAGKSKFIIGDGN 218 (485)
Q Consensus 144 ~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~~--~~~~~~~~~g~~~~~~g~g~ 218 (485)
+..+...|+.+|...|.+.+.++.+ .|+++++++||.+..+...... +..........
T Consensus 165 --------~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~--------- 227 (267)
T 1vl8_A 165 --------TMPNISAYAASKGGVASLTKALAKEWGRYGIRVNVIAPGWYRTKMTEAVFSDPEKLDYMLKRI--------- 227 (267)
T ss_dssp --------CSSSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSTTTHHHHTCHHHHHHHHHTC---------
T ss_pred --------CCCCChhHHHHHHHHHHHHHHHHHHhcccCeEEEEEEeccCccccccccccChHHHHHHHhhC---------
Confidence 1234578999999999998887643 5899999999999876422111 11222222221
Q ss_pred ceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCC
Q 047227 219 NVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNME 261 (485)
Q Consensus 219 ~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~ 261 (485)
....+.+++|+|++++.++.... ....|+.+++.++.
T Consensus 228 p~~~~~~p~dvA~~v~~l~s~~~------~~itG~~i~vdGG~ 264 (267)
T 1vl8_A 228 PLGRTGVPEDLKGVAVFLASEEA------KYVTGQIIFVDGGW 264 (267)
T ss_dssp TTSSCBCGGGGHHHHHHHHSGGG------TTCCSCEEEESTTG
T ss_pred CCCCCcCHHHHHHHHHHHcCccc------cCCcCCeEEECCCC
Confidence 12247889999999998865211 22578899888764
|
| >1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.84 E-value=2.5e-19 Score=169.09 Aligned_cols=216 Identities=19% Similarity=0.151 Sum_probs=156.1
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc--
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ-- 82 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 82 (485)
.++|++|||||+|+||+++++.|+++| ++|++++|.... ........++.++.+|++|++++.++++
T Consensus 3 l~~k~vlVTGas~giG~~ia~~l~~~G-~~V~~~~r~~~~----------~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 71 (245)
T 1uls_A 3 LKDKAVLITGAAHGIGRATLELFAKEG-ARLVACDIEEGP----------LREAAEAVGAHPVVMDVADPASVERGFAEA 71 (245)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESCHHH----------HHHHHHTTTCEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEeCCHHH----------HHHHHHHcCCEEEEecCCCHHHHHHHHHHH
Confidence 456899999999999999999999999 699999886431 1111111147889999999998887775
Q ss_pred -----CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHHHhc----CCCEEEEecCccccccCCCCcCCCC
Q 047227 83 -----GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDACAEL----KVKRLIYTSSPSVVFDGVHGIINGN 146 (485)
Q Consensus 83 -----~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~~~~----~v~r~V~~SS~~vy~~~~~~~~~~~ 146 (485)
++|+|||+||... ..++++..+++|+.++.++.+++... +.+++|++||...++
T Consensus 72 ~~~~g~id~lvn~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~---------- 141 (245)
T 1uls_A 72 LAHLGRLDGVVHYAGITRDNFHWKMPLEDWELVLRVNLTGSFLVAKAASEAMREKNPGSIVLTASRVYLG---------- 141 (245)
T ss_dssp HHHHSSCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCEEEEEECCGGGGC----------
T ss_pred HHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEccchhcC----------
Confidence 4899999999432 22355678899999999998887653 567999999987321
Q ss_pred CCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCceeec
Q 047227 147 EALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDF 223 (485)
Q Consensus 147 e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~ 223 (485)
..+...|+.+|...+.+.+.++.+ .|+++++++||.+..+.....-+..........+ ...+
T Consensus 142 ------~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~p---------~~~~ 206 (245)
T 1uls_A 142 ------NLGQANYAASMAGVVGLTRTLALELGRWGIRVNTLAPGFIETRMTAKVPEKVREKAIAATP---------LGRA 206 (245)
T ss_dssp ------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTTSSSCHHHHHHHHHTCT---------TCSC
T ss_pred ------CCCchhHHHHHHHHHHHHHHHHHHHhHhCeEEEEEEeCcCcCcchhhcCHHHHHHHHhhCC---------CCCC
Confidence 224568999999999888776543 5899999999999877543322222222222211 1237
Q ss_pred ccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCCC
Q 047227 224 TYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMES 262 (485)
Q Consensus 224 i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~ 262 (485)
.+++|+|++++.++.... ....|+.+++.++..
T Consensus 207 ~~~~dvA~~v~~l~s~~~------~~~tG~~~~vdgG~~ 239 (245)
T 1uls_A 207 GKPLEVAYAALFLLSDES------SFITGQVLFVDGGRT 239 (245)
T ss_dssp BCHHHHHHHHHHHHSGGG------TTCCSCEEEESTTTT
T ss_pred cCHHHHHHHHHHHhCchh------cCCcCCEEEECCCcc
Confidence 789999999998865211 226789999987643
|
| >4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A | Back alignment and structure |
|---|
Probab=99.84 E-value=2.6e-20 Score=176.91 Aligned_cols=223 Identities=16% Similarity=0.110 Sum_probs=164.3
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc-
Q 047227 4 EENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ- 82 (485)
Q Consensus 4 ~~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~- 82 (485)
..++|++|||||+|+||+++++.|.++| ++|.+.+|....... ....+ ..++.++.+|++|++++.++++
T Consensus 5 ~l~gk~~lVTGas~gIG~a~a~~l~~~G-~~V~~~~r~~~~~~~-------~~~~~-~~~~~~~~~Dv~~~~~v~~~~~~ 75 (255)
T 4eso_A 5 NYQGKKAIVIGGTHGMGLATVRRLVEGG-AEVLLTGRNESNIAR-------IREEF-GPRVHALRSDIADLNEIAVLGAA 75 (255)
T ss_dssp TTTTCEEEEETCSSHHHHHHHHHHHHTT-CEEEEEESCHHHHHH-------HHHHH-GGGEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHH-------HHHHh-CCcceEEEccCCCHHHHHHHHHH
Confidence 4567899999999999999999999999 699999887432110 11111 3578999999999998877664
Q ss_pred ------CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHHHhcC--CCEEEEecCccccccCCCCcCCCCC
Q 047227 83 ------GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDACAELK--VKRLIYTSSPSVVFDGVHGIINGNE 147 (485)
Q Consensus 83 ------~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~~~~~--v~r~V~~SS~~vy~~~~~~~~~~~e 147 (485)
+.|++||+||... +.++++..+++|+.++.++.+++...- -.++|++||...+.
T Consensus 76 ~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS~~~~~----------- 144 (255)
T 4eso_A 76 AGQTLGAIDLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVFTSSVADEG----------- 144 (255)
T ss_dssp HHHHHSSEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCGGGSS-----------
T ss_pred HHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCEEEEECChhhcC-----------
Confidence 5899999999432 334567789999999999999997641 34899999987763
Q ss_pred CCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCC--Ch----HHHHHHHHcCCCeEEecCCC
Q 047227 148 ALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRL--LV----PSLVAAARAGKSKFIIGDGN 218 (485)
Q Consensus 148 ~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~--~~----~~~~~~~~~g~~~~~~g~g~ 218 (485)
+..+...|+.+|...+.+.+.++.+ .|+++.+++||.+..|.... .. ..+........
T Consensus 145 ----~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~--------- 211 (255)
T 4eso_A 145 ----GHPGMSVYSASKAALVSFASVLAAELLPRGIRVNSVSPGFIDTPTKGVAGITEAERAEFKTLGDNIT--------- 211 (255)
T ss_dssp ----BCTTBHHHHHHHHHHHHHHHHHHHHTGGGTCEEEEEEECSBCCSSTTCTTSCHHHHHHHHHHHHHHS---------
T ss_pred ----CCCCchHHHHHHHHHHHHHHHHHHHHhhhCcEEEEEecCcccCcccccccCChhhHHHHHHHHhccC---------
Confidence 1245678999999999998887654 48999999999999875321 11 11222222211
Q ss_pred ceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCCCccHH
Q 047227 219 NVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMESIKFW 266 (485)
Q Consensus 219 ~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~~t~~ 266 (485)
....+.+++|+|++++.++.. .+ -..|+.+++.++...++.
T Consensus 212 p~~r~~~pedvA~~v~~L~s~-~~------~itG~~i~vdGG~~~~l~ 252 (255)
T 4eso_A 212 PMKRNGTADEVARAVLFLAFE-AT------FTTGAKLAVDGGLGQKLS 252 (255)
T ss_dssp TTSSCBCHHHHHHHHHHHHHT-CT------TCCSCEEEESTTTTTTBC
T ss_pred CCCCCcCHHHHHHHHHHHcCc-Cc------CccCCEEEECCCccccCc
Confidence 223467899999999988663 22 267999999988665543
|
| >1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=2.4e-20 Score=177.01 Aligned_cols=214 Identities=13% Similarity=0.069 Sum_probs=154.3
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCH-HHHHHHhc-
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHK-AQVLQALQ- 82 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~-~~l~~~~~- 82 (485)
.++|++|||||+|+||+++++.|+++|+..|.+++|.... .....+.......++.++.+|++|+ +++.++++
T Consensus 3 l~~k~vlVtGas~gIG~~~a~~l~~~G~~~v~~~~r~~~~-----~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 77 (254)
T 1sby_A 3 LTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENP-----TALAELKAINPKVNITFHTYDVTVPVAESKKLLKK 77 (254)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCH-----HHHHHHHHHCTTSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEecCchH-----HHHHHHHHhCCCceEEEEEEecCCChHHHHHHHHH
Confidence 4568999999999999999999999994348888886431 0000011111234688999999997 77777665
Q ss_pred ------CCCEEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcC-------CCEEEEecCccccccCCCCcCCCCCCC
Q 047227 83 ------GAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELK-------VKRLIYTSSPSVVFDGVHGIINGNEAL 149 (485)
Q Consensus 83 ------~~d~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~-------v~r~V~~SS~~vy~~~~~~~~~~~e~~ 149 (485)
++|+|||+||.. ..++++..+++|+.++.++.+++...- ..++|++||...+.
T Consensus 78 ~~~~~g~id~lv~~Ag~~-~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~g~iv~isS~~~~~------------- 143 (254)
T 1sby_A 78 IFDQLKTVDILINGAGIL-DDHQIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANICSVTGFN------------- 143 (254)
T ss_dssp HHHHHSCCCEEEECCCCC-CTTCHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTS-------------
T ss_pred HHHhcCCCCEEEECCccC-CHHHHhhhheeeehhHHHHHHHHHHHHHHhcCCCCCEEEEECchhhcc-------------
Confidence 699999999954 346778899999999999999986431 35799999987763
Q ss_pred CCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCC---h--HHHHHHHHcCCCeEEecCCCcee
Q 047227 150 PYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLL---V--PSLVAAARAGKSKFIIGDGNNVY 221 (485)
Q Consensus 150 ~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~---~--~~~~~~~~~g~~~~~~g~g~~~~ 221 (485)
+..+...|+.+|...|.+.+.++.+ .|+++++++||.+.++..... . .......... .
T Consensus 144 --~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~------------~ 209 (254)
T 1sby_A 144 --AIHQVPVYSASKAAVVSFTNSLAKLAPITGVTAYSINPGITRTPLVHTFNSWLDVEPRVAELLLS------------H 209 (254)
T ss_dssp --CCTTSHHHHHHHHHHHHHHHHHHHHHHHHSEEEEEEEECSEESHHHHSCCCGGGSCTTHHHHHTT------------S
T ss_pred --CCCCchHHHHHHHHHHHHHHHHHHHhccCCeEEEEEecCCccCccccccchhhhhhHHHHHHHhc------------C
Confidence 1234578999999999999887754 589999999999987631100 0 0000111111 1
Q ss_pred ecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCC
Q 047227 222 DFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNM 260 (485)
Q Consensus 222 ~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~ 260 (485)
++.+++|+|++++.+++. . ..|+.|++.++
T Consensus 210 ~~~~~~dvA~~i~~~~~~---~------~~G~~~~v~gG 239 (254)
T 1sby_A 210 PTQTSEQCGQNFVKAIEA---N------KNGAIWKLDLG 239 (254)
T ss_dssp CCEEHHHHHHHHHHHHHH---C------CTTCEEEEETT
T ss_pred CCCCHHHHHHHHHHHHHc---C------CCCCEEEEeCC
Confidence 334899999999988651 2 56889999887
|
| >3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.84 E-value=4.4e-20 Score=177.66 Aligned_cols=224 Identities=17% Similarity=0.124 Sum_probs=164.7
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhh--cCCCeEEEEecCCCHHHHHHHh
Q 047227 4 EENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEAL--RSGRAHYVSFDLRHKAQVLQAL 81 (485)
Q Consensus 4 ~~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~Dl~d~~~l~~~~ 81 (485)
..++|++|||||+|+||+++++.|+++| ++|.+++|....... ....+ ...++.++.+|++|++++.+++
T Consensus 5 ~l~gk~vlVTGas~GIG~aia~~la~~G-~~V~~~~r~~~~~~~-------~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~ 76 (280)
T 3tox_A 5 RLEGKIAIVTGASSGIGRAAALLFAREG-AKVVVTARNGNALAE-------LTDEIAGGGGEAAALAGDVGDEALHEALV 76 (280)
T ss_dssp TTTTCEEEESSTTSHHHHHHHHHHHHTT-CEEEECCSCHHHHHH-------HHHHHTTTTCCEEECCCCTTCHHHHHHHH
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEECCHHHHHH-------HHHHHHhcCCcEEEEECCCCCHHHHHHHH
Confidence 4567899999999999999999999999 689999887532111 11111 1357889999999999888877
Q ss_pred c-------CCCEEEEcCCCCC--------CCCchhhhHHHHHHHHHHHHHHHHh----cCCCEEEEecCccccccCCCCc
Q 047227 82 Q-------GAEVVFHMAAPNS--------SINNHKLHHSVNVEGTKNVIDACAE----LKVKRLIYTSSPSVVFDGVHGI 142 (485)
Q Consensus 82 ~-------~~d~Vih~aa~~~--------~~~~~~~~~~~nv~~t~~ll~a~~~----~~v~r~V~~SS~~vy~~~~~~~ 142 (485)
+ +.|++||+||... +.++++..+++|+.++.++.+++.. .+..++|++||...+..
T Consensus 77 ~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~----- 151 (280)
T 3tox_A 77 ELAVRRFGGLDTAFNNAGALGAMGEISSLSVEGWRETLDTNLTSAFLAAKYQVPAIAALGGGSLTFTSSFVGHTA----- 151 (280)
T ss_dssp HHHHHHHSCCCEEEECCCCCCSCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCSBTTTB-----
T ss_pred HHHHHHcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEEcChhhCcC-----
Confidence 5 6999999999431 2345678899999999999888754 34569999999776521
Q ss_pred CCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCC----ChHHHHHHHHcCCCeEEec
Q 047227 143 INGNEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRL----LVPSLVAAARAGKSKFIIG 215 (485)
Q Consensus 143 ~~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~----~~~~~~~~~~~g~~~~~~g 215 (485)
+..+...|+.+|+..+.+.+.++.+ .|+++.+++||.+.++.... ..+..........
T Consensus 152 ---------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~------ 216 (280)
T 3tox_A 152 ---------GFAGVAPYAASKAGLIGLVQALAVELGARGIRVNALLPGGTDTPANFANLPGAAPETRGFVEGLH------ 216 (280)
T ss_dssp ---------CCTTCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBSSTTSGGGSTTCCTHHHHHHHTTS------
T ss_pred ---------CCCCchhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEECCCCCchhhhhccccCHHHHHHHhccC------
Confidence 1245678999999999998887654 58999999999999875322 1122333333222
Q ss_pred CCCceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCCCcc
Q 047227 216 DGNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMESIK 264 (485)
Q Consensus 216 ~g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~~t 264 (485)
....+.+++|+|++++.++.... .-..|+.+++.+|..++
T Consensus 217 ---p~~r~~~pedvA~~v~~L~s~~a------~~itG~~i~vdGG~~~~ 256 (280)
T 3tox_A 217 ---ALKRIARPEEIAEAALYLASDGA------SFVTGAALLADGGASVT 256 (280)
T ss_dssp ---TTSSCBCHHHHHHHHHHHHSGGG------TTCCSCEEEESTTGGGC
T ss_pred ---ccCCCcCHHHHHHHHHHHhCccc------cCCcCcEEEECCCcccc
Confidence 23457889999999998865322 22679999999886543
|
| >3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.5e-20 Score=178.86 Aligned_cols=225 Identities=21% Similarity=0.148 Sum_probs=156.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhc--CCCeEEEEecCCCHHHHHHHhc--
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALR--SGRAHYVSFDLRHKAQVLQALQ-- 82 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~Dl~d~~~l~~~~~-- 82 (485)
+|++|||||+|+||+++++.|+++| ++|.+++|...... ..+ ....+. ..++.++.+|++|++++.++++
T Consensus 2 ~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~--~~~---~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~ 75 (258)
T 3a28_C 2 SKVAMVTGGAQGIGRGISEKLAADG-FDIAVADLPQQEEQ--AAE---TIKLIEAADQKAVFVGLDVTDKANFDSAIDEA 75 (258)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHT-CEEEEEECGGGHHH--HHH---HHHHHHTTTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCCcchHH--HHH---HHHHHHhcCCcEEEEEccCCCHHHHHHHHHHH
Confidence 4799999999999999999999999 68999988653200 000 111111 3578899999999998888775
Q ss_pred -----CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHHHhc----CC-CEEEEecCccccccCCCCcCCC
Q 047227 83 -----GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDACAEL----KV-KRLIYTSSPSVVFDGVHGIING 145 (485)
Q Consensus 83 -----~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~~~~----~v-~r~V~~SS~~vy~~~~~~~~~~ 145 (485)
++|+|||+||... ..++++..+++|+.++.++.+++... +. +++|++||...+.
T Consensus 76 ~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~--------- 146 (258)
T 3a28_C 76 AEKLGGFDVLVNNAGIAQIKPLLEVTEEDLKQIYSVNVFSVFFGIQAASRKFDELGVKGKIINAASIAAIQ--------- 146 (258)
T ss_dssp HHHHTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCCEEEEECCGGGTS---------
T ss_pred HHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCcEEEEECcchhcc---------
Confidence 6999999999432 22356778999999999998887753 66 7999999987653
Q ss_pred CCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCChHHHHHHH-H-cCC--C--eEEecC
Q 047227 146 NEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLLVPSLVAAA-R-AGK--S--KFIIGD 216 (485)
Q Consensus 146 ~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~-~-~g~--~--~~~~g~ 216 (485)
+..+...|+.+|...|.+.+.++.+ .|+++.+++||.+..+.. ....... . .+. . ...+..
T Consensus 147 ------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 216 (258)
T 3a28_C 147 ------GFPILSAYSTTKFAVRGLTQAAAQELAPKGHTVNAYAPGIVGTGMW----EQIDAELSKINGKPIGENFKEYSS 216 (258)
T ss_dssp ------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSHHH----HHHHHHHHHHHCCCTTHHHHHHHT
T ss_pred ------CCCCchhHHHHHHHHHHHHHHHHHHHHhhCeEEEEEECCccCChhh----hhhhhhhccccCCchHHHHHHHHh
Confidence 1234578999999999998877643 589999999999976521 1111000 0 000 0 000001
Q ss_pred CCceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCCC
Q 047227 217 GNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMES 262 (485)
Q Consensus 217 g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~ 262 (485)
......+.+++|+|++++.++.... ....|+.+++.++..
T Consensus 217 ~~p~~r~~~p~dvA~~v~~l~s~~~------~~~tG~~i~vdGG~~ 256 (258)
T 3a28_C 217 SIALGRPSVPEDVAGLVSFLASENS------NYVTGQVMLVDGGML 256 (258)
T ss_dssp TCTTSSCBCHHHHHHHHHHHHSGGG------TTCCSCEEEESSSSC
T ss_pred cCCCCCccCHHHHHHHHHHHhCccc------CCCCCCEEEECCCEe
Confidence 1122347899999999998865211 226789999988754
|
| >3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=2e-20 Score=178.04 Aligned_cols=219 Identities=15% Similarity=0.110 Sum_probs=159.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEe-ecCCccccCCccchhhhhhhh--cCCCeEEEEecCCCHHHHHHHhc
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIA-DLSDSIALEPHEEQGILGEAL--RSGRAHYVSFDLRHKAQVLQALQ 82 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~-~r~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~Dl~d~~~l~~~~~ 82 (485)
++|++|||||+|+||+++++.|.++| ++|.+. +|....... ....+ ...++.++.+|++|++++.++++
T Consensus 3 ~~k~vlVTGas~gIG~aia~~l~~~G-~~vv~~~~r~~~~~~~-------~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~ 74 (258)
T 3oid_A 3 QNKCALVTGSSRGVGKAAAIRLAENG-YNIVINYARSKKAALE-------TAEEIEKLGVKVLVVKANVGQPAKIKEMFQ 74 (258)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHTT-CEEEEEESSCHHHHHH-------HHHHHHTTTCCEEEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEecCCchHHHHHHHHHHHCC-CEEEEEcCCCHHHHHH-------HHHHHHhcCCcEEEEEcCCCCHHHHHHHHH
Confidence 35899999999999999999999999 588776 555331110 11111 13578999999999998888775
Q ss_pred -------CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHH----HhcCCCEEEEecCccccccCCCCcCC
Q 047227 83 -------GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDAC----AELKVKRLIYTSSPSVVFDGVHGIIN 144 (485)
Q Consensus 83 -------~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~----~~~~v~r~V~~SS~~vy~~~~~~~~~ 144 (485)
+.|++||+||... ..++++..+++|+.++.++.+++ ++.+..++|++||...+.
T Consensus 75 ~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~-------- 146 (258)
T 3oid_A 75 QIDETFGRLDVFVNNAASGVLRPVMELEETHWDWTMNINAKALLFCAQEAAKLMEKNGGGHIVSISSLGSIR-------- 146 (258)
T ss_dssp HHHHHHSCCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEEEEGGGTS--------
T ss_pred HHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECchhhCC--------
Confidence 4799999998321 23355678999999999998887 445567999999987652
Q ss_pred CCCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCC--hHHHHHHHHcCCCeEEecCCCc
Q 047227 145 GNEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLL--VPSLVAAARAGKSKFIIGDGNN 219 (485)
Q Consensus 145 ~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~--~~~~~~~~~~g~~~~~~g~g~~ 219 (485)
+..+...|+.||+..+.+.+.++.+ .|+++.+++||.+..+..... ...+........ .
T Consensus 147 -------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~---------p 210 (258)
T 3oid_A 147 -------YLENYTTVGVSKAALEALTRYLAVELSPKQIIVNAVSGGAIDTDALKHFPNREDLLEDARQNT---------P 210 (258)
T ss_dssp -------BCTTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECCBCSGGGGGCTTHHHHHHHHHHHC---------T
T ss_pred -------CCCCcHHHHHHHHHHHHHHHHHHHHHhhcCcEEEEEeeCCCcChhhhhcccCHHHHHHHHhcC---------C
Confidence 2345678999999999999887754 479999999999987743321 122333333222 2
Q ss_pred eeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCCC
Q 047227 220 VYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMES 262 (485)
Q Consensus 220 ~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~ 262 (485)
...+.+++|+|++++.++... ..-..|+.+++.+|..
T Consensus 211 ~~r~~~~~dva~~v~~L~s~~------~~~itG~~i~vdGG~~ 247 (258)
T 3oid_A 211 AGRMVEIKDMVDTVEFLVSSK------ADMIRGQTIIVDGGRS 247 (258)
T ss_dssp TSSCBCHHHHHHHHHHHTSST------TTTCCSCEEEESTTGG
T ss_pred CCCCcCHHHHHHHHHHHhCcc------cCCccCCEEEECCCcc
Confidence 235788999999999875421 1236799999988754
|
| >4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A | Back alignment and structure |
|---|
Probab=99.84 E-value=5.1e-20 Score=176.51 Aligned_cols=220 Identities=15% Similarity=0.059 Sum_probs=158.0
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhh--cCCCeEEEEecCCCHHHHHHHhc
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEAL--RSGRAHYVSFDLRHKAQVLQALQ 82 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~Dl~d~~~l~~~~~ 82 (485)
.++|++|||||+|+||+++++.|+++| ++|.+++|....... .+...+ ...++.++.+|++|.+++.++++
T Consensus 27 l~~k~vlITGas~gIG~~la~~l~~~G-~~V~~~~r~~~~~~~------~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~ 99 (271)
T 4iin_A 27 FTGKNVLITGASKGIGAEIAKTLASMG-LKVWINYRSNAEVAD------ALKNELEEKGYKAAVIKFDAASESDFIEAIQ 99 (271)
T ss_dssp CSCCEEEETTCSSHHHHHHHHHHHHTT-CEEEEEESSCHHHHH------HHHHHHHHTTCCEEEEECCTTCHHHHHHHHH
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCCCHHHHH------HHHHHHHhcCCceEEEECCCCCHHHHHHHHH
Confidence 356899999999999999999999999 689999885431110 011111 13578999999999998888775
Q ss_pred -------CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHHHh----cCCCEEEEecCccccccCCCCcCC
Q 047227 83 -------GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDACAE----LKVKRLIYTSSPSVVFDGVHGIIN 144 (485)
Q Consensus 83 -------~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~~~----~~v~r~V~~SS~~vy~~~~~~~~~ 144 (485)
++|+|||+||... ..++++..+++|+.++.++.+++.. .+..++|++||...+.
T Consensus 100 ~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~-------- 171 (271)
T 4iin_A 100 TIVQSDGGLSYLVNNAGVVRDKLAIKMKTEDFHHVIDNNLTSAFIGCREALKVMSKSRFGSVVNVASIIGER-------- 171 (271)
T ss_dssp HHHHHHSSCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHH--------
T ss_pred HHHHhcCCCCEEEECCCcCCCcccccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCCEEEEEechhhcC--------
Confidence 6999999999432 2345678899999999988877654 4567999999977753
Q ss_pred CCCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCcee
Q 047227 145 GNEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVY 221 (485)
Q Consensus 145 ~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~~ 221 (485)
+..+...|+.+|...+.+.+.++.+ .++++.+++||.+..+........... .........
T Consensus 172 -------~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~---------~~~~~~~~~ 235 (271)
T 4iin_A 172 -------GNMGQTNYSASKGGMIAMSKSFAYEGALRNIRFNSVTPGFIETDMNANLKDELKA---------DYVKNIPLN 235 (271)
T ss_dssp -------CCTTCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCCC---------------------CGGGCTTC
T ss_pred -------CCCCchHhHHHHHHHHHHHHHHHHHHHHhCcEEEEEEeCcccCCchhhhcHHHHH---------HHHhcCCcC
Confidence 2345678999999999999887654 689999999999987743322111111 111222345
Q ss_pred ecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCC
Q 047227 222 DFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNME 261 (485)
Q Consensus 222 ~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~ 261 (485)
.+.+++|+|++++.++.... ....|+.+++.+|.
T Consensus 236 ~~~~p~dvA~~i~~l~s~~~------~~itG~~i~vdGG~ 269 (271)
T 4iin_A 236 RLGSAKEVAEAVAFLLSDHS------SYITGETLKVNGGL 269 (271)
T ss_dssp SCBCHHHHHHHHHHHHSGGG------TTCCSCEEEESTTS
T ss_pred CCcCHHHHHHHHHHHhCCCc------CCCcCCEEEeCCCe
Confidence 68899999999998865322 22679999998864
|
| >3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.83 E-value=6.5e-20 Score=177.20 Aligned_cols=246 Identities=15% Similarity=0.127 Sum_probs=165.6
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCC-----ccchhhhhhh--hcCCCeEEEEecCCCHHHH
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEP-----HEEQGILGEA--LRSGRAHYVSFDLRHKAQV 77 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~-----~~~~~~~~~~--~~~~~v~~~~~Dl~d~~~l 77 (485)
.++|++|||||+|+||+++++.|+++| ++|.+++|........ .+........ ....++.++.+|++|++++
T Consensus 8 l~gk~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v 86 (287)
T 3pxx_A 8 VQDKVVLVTGGARGQGRSHAVKLAEEG-ADIILFDICHDIETNEYPLATSRDLEEAGLEVEKTGRKAYTAEVDVRDRAAV 86 (287)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTTSCEEEEECCTTCHHHH
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHCC-CeEEEEcccccccccccchhhhHHHHHHHHHHHhcCCceEEEEccCCCHHHH
Confidence 457899999999999999999999999 6999998874321110 0000001111 1245789999999999988
Q ss_pred HHHhc-------CCCEEEEcCCCC-----CCCCchhhhHHHHHHHHHHHHHHHHhcC--CCEEEEecCccccccCCCCcC
Q 047227 78 LQALQ-------GAEVVFHMAAPN-----SSINNHKLHHSVNVEGTKNVIDACAELK--VKRLIYTSSPSVVFDGVHGII 143 (485)
Q Consensus 78 ~~~~~-------~~d~Vih~aa~~-----~~~~~~~~~~~~nv~~t~~ll~a~~~~~--v~r~V~~SS~~vy~~~~~~~~ 143 (485)
.++++ +.|++||+||.. .+.++++..+++|+.++.++.+++...- -.++|++||...+......
T Consensus 87 ~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~~~~-- 164 (287)
T 3pxx_A 87 SRELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSGASIITTGSVAGLIAAAQP-- 164 (287)
T ss_dssp HHHHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECCHHHHHHHHCC--
T ss_pred HHHHHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEEEeccchhccccccc--
Confidence 87775 699999999932 2345677899999999999999998752 4599999998776422111
Q ss_pred CCCCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCChHHHHHHHHcC---CCe-----E
Q 047227 144 NGNEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLLVPSLVAAARAG---KSK-----F 212 (485)
Q Consensus 144 ~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g---~~~-----~ 212 (485)
+..+.. +..+...|+.+|...+.+.+.++.+ .|+++.+++||.+..+..... +. ....... ... .
T Consensus 165 ~~~~~~--~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~-~~-~~~~~~~~~~~~~~~~~~~ 240 (287)
T 3pxx_A 165 PGAGGP--QGPGGAGYSYAKQLVDSYTLQLAAQLAPQSIRANVIHPTNVNTDMLNSA-PM-YRQFRPDLEAPSRADALLA 240 (287)
T ss_dssp C-------CHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEESSBSSTTTSSH-HH-HHHHCTTSSSCCHHHHHHH
T ss_pred cccccc--CCCccchHHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCcccccccccc-ch-hhhhccccccchhHHHHhh
Confidence 111211 1234567999999999998887654 489999999999998754321 10 0011000 000 0
Q ss_pred EecCCCceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCCCc
Q 047227 213 IIGDGNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMESI 263 (485)
Q Consensus 213 ~~g~g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~~ 263 (485)
..........+.+++|+|++++.++... ..-..|+.+++.+|..+
T Consensus 241 ~~~~~~~~~~~~~p~dva~~v~fL~s~~------a~~itG~~i~vdGG~~~ 285 (287)
T 3pxx_A 241 FPAMQAMPTPYVEASDISNAVCFLASDE------SRYVTGLQFKVDAGAML 285 (287)
T ss_dssp GGGGCSSSCSCBCHHHHHHHHHHHHSGG------GTTCCSCEEEESTTGGG
T ss_pred hhhhcccCCCCCCHHHHHhhHheecchh------hcCCCCceEeECchhhh
Confidence 0001112257899999999999886421 12267999999887654
|
| >1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.83 E-value=6.4e-20 Score=178.10 Aligned_cols=236 Identities=12% Similarity=0.081 Sum_probs=163.3
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhc-CC---CeEEEEecCCCHHHHHHH
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALR-SG---RAHYVSFDLRHKAQVLQA 80 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~-~~---~v~~~~~Dl~d~~~l~~~ 80 (485)
.++|++|||||+|+||+++++.|+++| ++|++++|....... ....... .. ++.++.+|++|++++.++
T Consensus 24 l~~k~vlVTGas~gIG~aia~~L~~~G-~~V~~~~r~~~~~~~------~~~~l~~~~~~~~~~~~~~~Dv~d~~~v~~~ 96 (297)
T 1xhl_A 24 FSGKSVIITGSSNGIGRSAAVIFAKEG-AQVTITGRNEDRLEE------TKQQILKAGVPAEKINAVVADVTEASGQDDI 96 (297)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTT-CEEEEEESCHHHHHH------HHHHHHHTTCCGGGEEEEECCTTSHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHH------HHHHHHhcCCCCceEEEEecCCCCHHHHHHH
Confidence 356899999999999999999999999 699999887532110 0111111 12 688999999999988887
Q ss_pred hc-------CCCEEEEcCCCCC---------CCCchhhhHHHHHHHHHHHHHHHHh----cCCCEEEEecCccccccCCC
Q 047227 81 LQ-------GAEVVFHMAAPNS---------SINNHKLHHSVNVEGTKNVIDACAE----LKVKRLIYTSSPSVVFDGVH 140 (485)
Q Consensus 81 ~~-------~~d~Vih~aa~~~---------~~~~~~~~~~~nv~~t~~ll~a~~~----~~v~r~V~~SS~~vy~~~~~ 140 (485)
++ ++|+|||+||... ..++++..+++|+.++.++.+++.. .+ +++|++||...+...
T Consensus 97 ~~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~-g~IV~isS~~~~~~~-- 173 (297)
T 1xhl_A 97 INTTLAKFGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLIKTK-GEIVNVSSIVAGPQA-- 173 (297)
T ss_dssp HHHHHHHHSCCCEEEECCCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-CEEEEECCGGGSSSC--
T ss_pred HHHHHHhcCCCCEEEECCCcCcCCCCccccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcC-CEEEEEcCchhccCC--
Confidence 75 6899999999322 1234567899999999999888765 34 799999998765310
Q ss_pred CcCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhC---CCCceEEEEecCCcccCCCCCC--hHH----HHHHHHcCCCe
Q 047227 141 GIINGNEALPYPPKHNDFYSATKAEGEALVIKANG---TNGLLTCCIRPSSIFGPGDRLL--VPS----LVAAARAGKSK 211 (485)
Q Consensus 141 ~~~~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~---~~g~~~~ilRp~~v~Gp~~~~~--~~~----~~~~~~~g~~~ 211 (485)
..+...|+.+|...+.+.+.++. .+|++++++|||.+.++..... ... .......-.
T Consensus 174 ------------~~~~~~Y~asKaa~~~l~~~la~el~~~gI~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~-- 239 (297)
T 1xhl_A 174 ------------HSGYPYYACAKAALDQYTRCTAIDLIQHGVRVNSVSPGAVATGFMGAMGLPETASDKLYSFIGSRK-- 239 (297)
T ss_dssp ------------CTTSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSSHHHHTTCCHHHHHHHHHHHHHCT--
T ss_pred ------------CCCcchHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCCcCccccccccccccccchHHHHHHHH--
Confidence 03456899999999999888763 4689999999999988732111 000 000011100
Q ss_pred EEecCCCceeecccHHHHHHHHHHHHHHh-ccccchhhccCCcEEEeeCCCCccHHHHHHHHHH
Q 047227 212 FIIGDGNNVYDFTYVANVAHAHICAERAL-ASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILE 274 (485)
Q Consensus 212 ~~~g~g~~~~~~i~v~D~a~a~~~~~~~~-~~~~~~~~~~~g~~ynv~~~~~~t~~el~~~i~~ 274 (485)
.......+..++|+|++++.++... .. -..|+.+++.++..+.+.+....+.+
T Consensus 240 ----~~~p~~r~~~pedvA~~v~~l~s~~~~~------~itG~~i~vdGG~~~~~~~~~~~~~~ 293 (297)
T 1xhl_A 240 ----ECIPVGHCGKPEEIANIIVFLADRNLSS------YIIGQSIVADGGSTLVMGMQTHDLMS 293 (297)
T ss_dssp ----TTCTTSSCBCHHHHHHHHHHHHCHHHHT------TCCSCEEEESTTGGGCCGGGGSCHHH
T ss_pred ----hcCCCCCCcCHHHHHHHHHHHhCCcccC------CccCcEEEECCCccccccccccchhh
Confidence 1112235789999999999886521 11 26789999998876665554444433
|
| >3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=2.3e-19 Score=171.38 Aligned_cols=226 Identities=12% Similarity=0.064 Sum_probs=164.3
Q ss_pred CCCCCCCCEEEEEcCCCc--hHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHH
Q 047227 1 MSGEENERLCVVTGGRGF--AARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVL 78 (485)
Q Consensus 1 M~~~~~~~~iLVtGgtG~--iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~ 78 (485)
|+-+.++|++|||||+|+ ||+++++.|+++| ++|.+++|..... +....+.......++.++.+|++|++++.
T Consensus 1 M~~~l~~k~vlVTGasg~~GIG~~ia~~l~~~G-~~V~~~~r~~~~~----~~~~~~~~~~~~~~~~~~~~D~~~~~~v~ 75 (266)
T 3oig_A 1 MNFSLEGRNIVVMGVANKRSIAWGIARSLHEAG-ARLIFTYAGERLE----KSVHELAGTLDRNDSIILPCDVTNDAEIE 75 (266)
T ss_dssp CCSCCTTCEEEEECCCSTTSHHHHHHHHHHHTT-CEEEEEESSGGGH----HHHHHHHHTSSSCCCEEEECCCSSSHHHH
T ss_pred CccccCCCEEEEEcCCCCCcHHHHHHHHHHHCC-CEEEEecCchHHH----HHHHHHHHhcCCCCceEEeCCCCCHHHHH
Confidence 665677899999999999 9999999999999 6899988864311 11000111122347899999999998888
Q ss_pred HHhc-------CCCEEEEcCCCCC-----------CCCchhhhHHHHHHHHHHHHHHHHhcC--CCEEEEecCccccccC
Q 047227 79 QALQ-------GAEVVFHMAAPNS-----------SINNHKLHHSVNVEGTKNVIDACAELK--VKRLIYTSSPSVVFDG 138 (485)
Q Consensus 79 ~~~~-------~~d~Vih~aa~~~-----------~~~~~~~~~~~nv~~t~~ll~a~~~~~--v~r~V~~SS~~vy~~~ 138 (485)
++++ +.|++||+|+... ..+++...+++|+.++.++.+++...- -.++|++||...+.
T Consensus 76 ~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~~~~-- 153 (266)
T 3oig_A 76 TCFASIKEQVGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTLTYLGGEL-- 153 (266)
T ss_dssp HHHHHHHHHHSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEECGGGTS--
T ss_pred HHHHHHHHHhCCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCCceEEEEecccccc--
Confidence 7775 5899999999432 223456788999999999999998763 24899999987653
Q ss_pred CCCcCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCC--hHHHHHHHHcCCCeEE
Q 047227 139 VHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLL--VPSLVAAARAGKSKFI 213 (485)
Q Consensus 139 ~~~~~~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~--~~~~~~~~~~g~~~~~ 213 (485)
+......|+.+|+..+.+.+.++.+ .|+++.+++||.+..+..... ............+
T Consensus 154 -------------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~--- 217 (266)
T 3oig_A 154 -------------VMPNYNVMGVAKASLDASVKYLAADLGKENIRVNSISAGPIRTLSAKGISDFNSILKDIEERAP--- 217 (266)
T ss_dssp -------------CCTTTHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCSGGGTTCTTHHHHHHHHHHHST---
T ss_pred -------------cCCCcchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCcccccccccccchHHHHHHHHhcCC---
Confidence 1335678999999999998877643 589999999999988643321 2233333332221
Q ss_pred ecCCCceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCC
Q 047227 214 IGDGNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNME 261 (485)
Q Consensus 214 ~g~g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~ 261 (485)
...+..++|+|++++.++.... ....|+.+++.++.
T Consensus 218 ------~~~~~~p~dva~~v~~l~s~~~------~~~tG~~i~vdGG~ 253 (266)
T 3oig_A 218 ------LRRTTTPEEVGDTAAFLFSDMS------RGITGENLHVDSGF 253 (266)
T ss_dssp ------TSSCCCHHHHHHHHHHHHSGGG------TTCCSCEEEESTTG
T ss_pred ------CCCCCCHHHHHHHHHHHcCCch------hcCcCCEEEECCCe
Confidence 2346789999999998876322 22679999998874
|
| >2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A | Back alignment and structure |
|---|
Probab=99.83 E-value=8.5e-20 Score=171.58 Aligned_cols=212 Identities=22% Similarity=0.172 Sum_probs=152.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHh-----
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQAL----- 81 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~----- 81 (485)
+|++|||||+|+||+++++.|.++| ++|.+++|.... ....+ ++..+.+|++| +++.+++
T Consensus 2 ~k~vlVTGas~giG~~~a~~l~~~G-~~V~~~~r~~~~----------~~~~~---~~~~~~~D~~~-~~~~~~~~~~~~ 66 (239)
T 2ekp_A 2 ERKALVTGGSRGIGRAIAEALVARG-YRVAIASRNPEE----------AAQSL---GAVPLPTDLEK-DDPKGLVKRALE 66 (239)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSCHH----------HHHHH---TCEEEECCTTT-SCHHHHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCCHHH----------HHHhh---CcEEEecCCch-HHHHHHHHHHHH
Confidence 4799999999999999999999999 699999887542 11112 37889999998 6555544
Q ss_pred --cCCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHHH----hcCCCEEEEecCccccccCCCCcCCCCCC
Q 047227 82 --QGAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDACA----ELKVKRLIYTSSPSVVFDGVHGIINGNEA 148 (485)
Q Consensus 82 --~~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~~----~~~v~r~V~~SS~~vy~~~~~~~~~~~e~ 148 (485)
.+.|++||+|+... +.++++..+++|+.++.++.+++. +.+.+++|++||...+...
T Consensus 67 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~---------- 136 (239)
T 2ekp_A 67 ALGGLHVLVHAAAVNVRKPALELSYEEWRRVLYLHLDVAFLLAQAAAPHMAEAGWGRVLFIGSVTTFTAG---------- 136 (239)
T ss_dssp HHTSCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCC----------
T ss_pred HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECchhhccCC----------
Confidence 36999999999321 233567889999999999988874 4567899999998876311
Q ss_pred CCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCC--hHHHHHHHHcCCCeEEecCCCceeec
Q 047227 149 LPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLL--VPSLVAAARAGKSKFIIGDGNNVYDF 223 (485)
Q Consensus 149 ~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~--~~~~~~~~~~g~~~~~~g~g~~~~~~ 223 (485)
+..+...|+.+|...|.+.+.++.+ .|++++++||+.+.++..... .+.+........ ....+
T Consensus 137 ---~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~---------p~~~~ 204 (239)
T 2ekp_A 137 ---GPVPIPAYTTAKTALLGLTRALAKEWARLGIRVNLLCPGYVETEFTLPLRQNPELYEPITARI---------PMGRW 204 (239)
T ss_dssp ---TTSCCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGGGHHHHTCHHHHHHHHTTC---------TTSSC
T ss_pred ---CCCCCccHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEeCCccCchhhccccCHHHHHHHHhcC---------CCCCC
Confidence 0135678999999999998887654 489999999999987742211 012222222211 12347
Q ss_pred ccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCC
Q 047227 224 TYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNME 261 (485)
Q Consensus 224 i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~ 261 (485)
..++|+|++++.++... .....|+.+++.++.
T Consensus 205 ~~~~dvA~~~~~l~s~~------~~~~tG~~~~vdgG~ 236 (239)
T 2ekp_A 205 ARPEEIARVAAVLCGDE------AEYLTGQAVAVDGGF 236 (239)
T ss_dssp BCHHHHHHHHHHHTSGG------GTTCCSCEEEESTTT
T ss_pred cCHHHHHHHHHHHcCch------hcCCCCCEEEECCCc
Confidence 88999999998875421 122578899888763
|
| >3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber} | Back alignment and structure |
|---|
Probab=99.83 E-value=3.5e-20 Score=178.41 Aligned_cols=218 Identities=14% Similarity=0.009 Sum_probs=157.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhh--cCCCeEEEEecCCCHHHHHHHhc-
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEAL--RSGRAHYVSFDLRHKAQVLQALQ- 82 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~Dl~d~~~l~~~~~- 82 (485)
++|++|||||+|+||+++++.|.++| ++|.+++|....... ....+ ...++.++.+|++|++++.++++
T Consensus 23 ~~k~~lVTGas~GIG~aia~~la~~G-~~V~~~~r~~~~~~~-------~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~ 94 (279)
T 3sju_A 23 RPQTAFVTGVSSGIGLAVARTLAARG-IAVYGCARDAKNVSA-------AVDGLRAAGHDVDGSSCDVTSTDEVHAAVAA 94 (279)
T ss_dssp --CEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHH-------HHHHHHTTTCCEEEEECCTTCHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHH-------HHHHHHhcCCcEEEEECCCCCHHHHHHHHHH
Confidence 45799999999999999999999999 689999886532111 11111 13578999999999998887765
Q ss_pred ------CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHHHh------cCCCEEEEecCccccccCCCCcC
Q 047227 83 ------GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDACAE------LKVKRLIYTSSPSVVFDGVHGII 143 (485)
Q Consensus 83 ------~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~~~------~~v~r~V~~SS~~vy~~~~~~~~ 143 (485)
+.|+|||+||... ..++++..+++|+.++.++.+++.. .+..++|++||...+.
T Consensus 95 ~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~g~iV~isS~~~~~------- 167 (279)
T 3sju_A 95 AVERFGPIGILVNSAGRNGGGETADLDDALWADVLDTNLTGVFRVTREVLRAGGMREAGWGRIVNIASTGGKQ------- 167 (279)
T ss_dssp HHHHHCSCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSSHHHHTCEEEEEECCGGGTS-------
T ss_pred HHHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHhchhhHhhcCCcEEEEECChhhcc-------
Confidence 5899999999332 2335667889999999999998755 4567999999987752
Q ss_pred CCCCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCC-----------ChHHHHHHHHcCC
Q 047227 144 NGNEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRL-----------LVPSLVAAARAGK 209 (485)
Q Consensus 144 ~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~-----------~~~~~~~~~~~g~ 209 (485)
+..+...|+.+|+..+.+.+.++.+ .|+++.+++||.+.++.... ............
T Consensus 168 --------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 238 (279)
T 3sju_A 168 --------GVMYAAPYTASKHGVVGFTKSVGFELAKTGITVNAVCPGYVETPMAERVREGYARHWGVTEQEVHERFNAK- 238 (279)
T ss_dssp --------CCTTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEESSBCSHHHHHHHHSCCSSSCCCHHHHHHHHHTT-
T ss_pred --------CCCCChhHHHHHHHHHHHHHHHHHHHHhhCcEEEEEeeCcccchHHHHHHhhhhhcccCChHHHHHHHHhc-
Confidence 2345678999999999998877654 58999999999998752110 011222222222
Q ss_pred CeEEecCCCceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCC
Q 047227 210 SKFIIGDGNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNME 261 (485)
Q Consensus 210 ~~~~~g~g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~ 261 (485)
.....+.+++|+|++++.++... ..-..|+.+++.+|.
T Consensus 239 --------~p~~r~~~pedvA~~v~~L~s~~------a~~itG~~i~vdGG~ 276 (279)
T 3sju_A 239 --------IPLGRYSTPEEVAGLVGYLVTDA------AASITAQALNVCGGL 276 (279)
T ss_dssp --------CTTSSCBCHHHHHHHHHHHTSSG------GGGCCSCEEEESTTC
T ss_pred --------CCCCCCCCHHHHHHHHHHHhCcc------ccCcCCcEEEECCCc
Confidence 23345788999999998875421 122679999998764
|
| >3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.83 E-value=5.7e-20 Score=174.91 Aligned_cols=227 Identities=12% Similarity=-0.008 Sum_probs=154.0
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhh-hcCCCeEEEEecCCCHHHHHHHhc
Q 047227 4 EENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEA-LRSGRAHYVSFDLRHKAQVLQALQ 82 (485)
Q Consensus 4 ~~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~l~~~~~ 82 (485)
..++|++|||||+|+||+++++.|.++| ++|.+.++....... . ..... ....++.++.+|++|++++.++++
T Consensus 5 ~l~~k~vlVTGas~GIG~aia~~la~~G-~~V~~~~~~~~~~~~---~--~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~ 78 (259)
T 3edm_A 5 RFTNRTIVVAGAGRDIGRACAIRFAQEG-ANVVLTYNGAAEGAA---T--AVAEIEKLGRSALAIKADLTNAAEVEAAIS 78 (259)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECSSCHHHH---H--HHHHHHTTTSCCEEEECCTTCHHHHHHHHH
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEcCCCHHHHH---H--HHHHHHhcCCceEEEEcCCCCHHHHHHHHH
Confidence 4567899999999999999999999999 688887443321100 0 01111 113578899999999998888775
Q ss_pred -------CCCEEEEcCCCC--------CCCCchhhhHHHHHHHHHHHHHHHHhcCC--CEEEEecCccccccCCCCcCCC
Q 047227 83 -------GAEVVFHMAAPN--------SSINNHKLHHSVNVEGTKNVIDACAELKV--KRLIYTSSPSVVFDGVHGIING 145 (485)
Q Consensus 83 -------~~d~Vih~aa~~--------~~~~~~~~~~~~nv~~t~~ll~a~~~~~v--~r~V~~SS~~vy~~~~~~~~~~ 145 (485)
+.|++||+||.. .+.++++..+++|+.++.++.+++...-. .++|++||...+..
T Consensus 79 ~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~isS~~~~~~-------- 150 (259)
T 3edm_A 79 AAADKFGEIHGLVHVAGGLIARKTIAEMDEAFWHQVLDVNLTSLFLTAKTALPKMAKGGAIVTFSSQAGRDG-------- 150 (259)
T ss_dssp HHHHHHCSEEEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCHHHHHC--------
T ss_pred HHHHHhCCCCEEEECCCccCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEcCHHhccC--------
Confidence 589999999832 12234577899999999999999987642 38999999877621
Q ss_pred CCCCCCCCCCCchHHHHHHHHHHHHHHHhCCC--CceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCceeec
Q 047227 146 NEALPYPPKHNDFYSATKAEGEALVIKANGTN--GLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDF 223 (485)
Q Consensus 146 ~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~--g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~ 223 (485)
+..+...|+.+|...+.+.+.++.+. ++++.+++||.+..+....... ...............+
T Consensus 151 ------~~~~~~~Y~asKaa~~~l~~~la~e~~~~I~vn~v~PG~v~T~~~~~~~~--------~~~~~~~~~~~p~~r~ 216 (259)
T 3edm_A 151 ------GGPGALAYATSKGAVMTFTRGLAKEVGPKIRVNAVCPGMISTTFHDTFTK--------PEVRERVAGATSLKRE 216 (259)
T ss_dssp ------CSTTCHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCBCC------------------------------CC
T ss_pred ------CCCCcHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCcCcccccccC--------hHHHHHHHhcCCCCCC
Confidence 12356789999999999988776442 3999999999998764322111 0011111122344567
Q ss_pred ccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCCCcc
Q 047227 224 TYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMESIK 264 (485)
Q Consensus 224 i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~~t 264 (485)
.+++|+|++++.++.... .-..|+.+++.++....
T Consensus 217 ~~pedva~~v~~L~s~~~------~~itG~~i~vdGg~~~~ 251 (259)
T 3edm_A 217 GSSEDVAGLVAFLASDDA------AYVTGACYDINGGVLFS 251 (259)
T ss_dssp BCHHHHHHHHHHHHSGGG------TTCCSCEEEESBCSSBC
T ss_pred cCHHHHHHHHHHHcCccc------cCccCCEEEECCCcCCC
Confidence 889999999998865221 22679999998875443
|
| >2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.83 E-value=5.5e-20 Score=172.20 Aligned_cols=187 Identities=16% Similarity=0.041 Sum_probs=133.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc----
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ---- 82 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~---- 82 (485)
+++||||||+|+||+++++.|+++| ++|++++|...... . .... ..++.++.+|++|.+++.++++
T Consensus 5 ~k~vlVtGasggiG~~~a~~l~~~G-~~V~~~~r~~~~~~----~---~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~ 74 (234)
T 2ehd_A 5 KGAVLITGASRGIGEATARLLHAKG-YRVGLMARDEKRLQ----A---LAAE--LEGALPLPGDVREEGDWARAVAAMEE 74 (234)
T ss_dssp CCEEEESSTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHH----H---HHHH--STTCEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEECCHHHHH----H---HHHH--hhhceEEEecCCCHHHHHHHHHHHHH
Confidence 5789999999999999999999999 58999988643110 0 1111 1378899999999998887765
Q ss_pred ---CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHH----HHHHhcCCCEEEEecCccccccCCCCcCCCCCC
Q 047227 83 ---GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVI----DACAELKVKRLIYTSSPSVVFDGVHGIINGNEA 148 (485)
Q Consensus 83 ---~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll----~a~~~~~v~r~V~~SS~~vy~~~~~~~~~~~e~ 148 (485)
++|+|||+||... ..+++...+++|+.++.++. +.+++.+.+++|++||...+.
T Consensus 75 ~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~------------ 142 (234)
T 2ehd_A 75 AFGELSALVNNAGVGVMKPVHELTLEEWRLVLDTNLTGAFLGIRHAVPALLRRGGGTIVNVGSLAGKN------------ 142 (234)
T ss_dssp HHSCCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEECCTTTTS------------
T ss_pred HcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCcEEEEECCchhcC------------
Confidence 6899999999432 22356778999999997554 445666778999999987763
Q ss_pred CCCCCCCCchHHHHHHHHHHHHHHHhC---CCCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCceeeccc
Q 047227 149 LPYPPKHNDFYSATKAEGEALVIKANG---TNGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFTY 225 (485)
Q Consensus 149 ~~~~~~~~~~Y~~sK~~~E~~~~~~~~---~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~ 225 (485)
+..+...|+.+|...|.+.+.++. ..|++++++|||.+..+.... . . .. ..+++
T Consensus 143 ---~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~----~-----~-~~----------~~~~~ 199 (234)
T 2ehd_A 143 ---PFKGGAAYNASKFGLLGLAGAAMLDLREANVRVVNVLPGSVDTGFAGN----T-----P-GQ----------AWKLK 199 (234)
T ss_dssp ---CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEECC------------------------------------CC
T ss_pred ---CCCCCchhhHHHHHHHHHHHHHHHHHhhcCcEEEEEEeCCCcCCcccc----c-----c-cc----------cCCCC
Confidence 123567899999999988877653 358999999999987653211 0 0 00 11578
Q ss_pred HHHHHHHHHHHHH
Q 047227 226 VANVAHAHICAER 238 (485)
Q Consensus 226 v~D~a~a~~~~~~ 238 (485)
++|+|++++.++.
T Consensus 200 ~~dvA~~~~~l~~ 212 (234)
T 2ehd_A 200 PEDVAQAVLFALE 212 (234)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC
Confidence 9999999998876
|
| >2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.5e-19 Score=171.36 Aligned_cols=211 Identities=18% Similarity=0.094 Sum_probs=152.1
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc--
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ-- 82 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 82 (485)
.++|++|||||+|+||+++++.|+++| ++|.+.+|.... ...+.++.+|++|++++.++++
T Consensus 19 l~~k~vlVTGas~gIG~aia~~l~~~G-~~V~~~~r~~~~----------------~~~~~~~~~Dl~d~~~v~~~~~~~ 81 (253)
T 2nm0_A 19 HMSRSVLVTGGNRGIGLAIARAFADAG-DKVAITYRSGEP----------------PEGFLAVKCDITDTEQVEQAYKEI 81 (253)
T ss_dssp -CCCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSSCC----------------CTTSEEEECCTTSHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEeCChHh----------------hccceEEEecCCCHHHHHHHHHHH
Confidence 346899999999999999999999999 699999886431 1237889999999998887775
Q ss_pred -----CCCEEEEcCCCC-------CCCCchhhhHHHHHHHHHHHHHHHHh----cCCCEEEEecCccccccCCCCcCCCC
Q 047227 83 -----GAEVVFHMAAPN-------SSINNHKLHHSVNVEGTKNVIDACAE----LKVKRLIYTSSPSVVFDGVHGIINGN 146 (485)
Q Consensus 83 -----~~d~Vih~aa~~-------~~~~~~~~~~~~nv~~t~~ll~a~~~----~~v~r~V~~SS~~vy~~~~~~~~~~~ 146 (485)
++|+|||+||.. ...++++..+++|+.++.++.+++.. .+.+++|++||...+..
T Consensus 82 ~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~--------- 152 (253)
T 2nm0_A 82 EETHGPVEVLIANAGVTKDQLLMRMSEEDFTSVVETNLTGTFRVVKRANRAMLRAKKGRVVLISSVVGLLG--------- 152 (253)
T ss_dssp HHHTCSCSEEEEECSCCTTTC---CCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECCCCCCCC---------
T ss_pred HHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECchhhCCC---------
Confidence 379999999932 13456788999999999999887654 36679999999766521
Q ss_pred CCCCCCCCCCchHHHHHHHHHHHHHHHhC---CCCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCceeec
Q 047227 147 EALPYPPKHNDFYSATKAEGEALVIKANG---TNGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDF 223 (485)
Q Consensus 147 e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~---~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~ 223 (485)
..+...|+.+|...+.+.+.++. ..++++.+++|+.+..+.....-........... ....+
T Consensus 153 ------~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~---------p~~~~ 217 (253)
T 2nm0_A 153 ------SAGQANYAASKAGLVGFARSLARELGSRNITFNVVAPGFVDTDMTKVLTDEQRANIVSQV---------PLGRY 217 (253)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHHHHHHCSSSEEEEEEEECSBCC---------CHHHHHTTC---------TTCSC
T ss_pred ------CCCcHHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCcCcCcchhhcCHHHHHHHHhcC---------CCCCC
Confidence 12346899999999999887653 3689999999999876642211111111111111 12347
Q ss_pred ccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCCC
Q 047227 224 TYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMES 262 (485)
Q Consensus 224 i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~ 262 (485)
+.++|+|++++.++.... ....|+.+++.++..
T Consensus 218 ~~p~dvA~~i~~l~s~~~------~~~tG~~i~vdGG~~ 250 (253)
T 2nm0_A 218 ARPEEIAATVRFLASDDA------SYITGAVIPVDGGLG 250 (253)
T ss_dssp BCHHHHHHHHHHHHSGGG------TTCCSCEEEESTTTT
T ss_pred cCHHHHHHHHHHHhCccc------cCCcCcEEEECCccc
Confidence 899999999998865321 225789999987754
|
| >1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.83 E-value=4.9e-20 Score=175.10 Aligned_cols=228 Identities=20% Similarity=0.178 Sum_probs=155.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhh-cCCCeEEEEecCCCHHHHHHHhc---
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEAL-RSGRAHYVSFDLRHKAQVLQALQ--- 82 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~--- 82 (485)
+|++|||||+|+||+++++.|+++| ++|++++|....... ...... ...++.++.+|++|++++.++++
T Consensus 2 ~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~------~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~ 74 (256)
T 1geg_A 2 KKVALVTGAGQGIGKAIALRLVKDG-FAVAIADYNDATAKA------VASEINQAGGHAVAVKVDVSDRDQVFAAVEQAR 74 (256)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHH------HHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCEEEEECCCChHHHHHHHHHHHCC-CEEEEEeCCHHHHHH------HHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHH
Confidence 4789999999999999999999999 689999886432110 011111 13468899999999999888876
Q ss_pred ----CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHHHh----cC-CCEEEEecCccccccCCCCcCCCC
Q 047227 83 ----GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDACAE----LK-VKRLIYTSSPSVVFDGVHGIINGN 146 (485)
Q Consensus 83 ----~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~~~----~~-v~r~V~~SS~~vy~~~~~~~~~~~ 146 (485)
++|+|||+||... ..++++..+++|+.++.++.+++.. .+ .+++|++||...+.
T Consensus 75 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~---------- 144 (256)
T 1geg_A 75 KTLGGFDVIVNNAGVAPSTPIESITPEIVDKVYNINVKGVIWGIQAAVEAFKKEGHGGKIINACSQAGHV---------- 144 (256)
T ss_dssp HHTTCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTS----------
T ss_pred HHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCEEEEECchhhcC----------
Confidence 6999999999322 2234567899999999888777654 34 57999999976652
Q ss_pred CCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCChHHHHHHHH--cCCCeEEecCCCcee
Q 047227 147 EALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLLVPSLVAAAR--AGKSKFIIGDGNNVY 221 (485)
Q Consensus 147 e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~--~g~~~~~~g~g~~~~ 221 (485)
+..+...|+.+|...+.+.+.++.+ .|+++++++||.+.++........+..... .......+.......
T Consensus 145 -----~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 219 (256)
T 1geg_A 145 -----GNPELAVYSSSKFAVRGLTQTAARDLAPLGITVNGYCPGIVKTPMWAEIDRQVSEAAGKPLGYGTAEFAKRITLG 219 (256)
T ss_dssp -----CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSHHHHHHHHHHHHHHTCCTTHHHHHHHTTCTTC
T ss_pred -----CCCCchhHHHHHHHHHHHHHHHHHHHHHcCeEEEEEEECCCccchhhhhhhhccccccCChHHHHHHHHhcCCCC
Confidence 1234568999999999998887643 589999999999987631110000000000 000000000111223
Q ss_pred ecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCCC
Q 047227 222 DFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMES 262 (485)
Q Consensus 222 ~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~ 262 (485)
.+.+++|+|++++.++.... .-..|+.+++.++..
T Consensus 220 r~~~p~dvA~~v~~l~s~~~------~~~tG~~i~vdGG~~ 254 (256)
T 1geg_A 220 RLSEPEDVAACVSYLASPDS------DYMTGQSLLIDGGMV 254 (256)
T ss_dssp SCBCHHHHHHHHHHHHSGGG------TTCCSCEEEESSSSS
T ss_pred CCcCHHHHHHHHHHHhCccc------cCCCCCEEEeCCCcc
Confidence 57899999999998865211 225789999987643
|
| >3uce_A Dehydrogenase; rossmann fold, oxidoreductase; HET: NDP; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=99.83 E-value=3.2e-20 Score=172.63 Aligned_cols=201 Identities=14% Similarity=0.061 Sum_probs=153.8
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc--
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ-- 82 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 82 (485)
.++|++|||||+|+||+++++.|.++| ++|.+.+|... +|++|++++.++++
T Consensus 4 ~~~k~vlVTGas~gIG~~~a~~l~~~G-~~V~~~~r~~~-------------------------~D~~~~~~v~~~~~~~ 57 (223)
T 3uce_A 4 SDKTVYVVLGGTSGIGAELAKQLESEH-TIVHVASRQTG-------------------------LDISDEKSVYHYFETI 57 (223)
T ss_dssp -CCEEEEEETTTSHHHHHHHHHHCSTT-EEEEEESGGGT-------------------------CCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEecCCcc-------------------------cCCCCHHHHHHHHHHh
Confidence 356899999999999999999999999 68998877531 89999999988876
Q ss_pred -CCCEEEEcCCCC--------CCCCchhhhHHHHHHHHHHHHHHHHhcC--CCEEEEecCccccccCCCCcCCCCCCCCC
Q 047227 83 -GAEVVFHMAAPN--------SSINNHKLHHSVNVEGTKNVIDACAELK--VKRLIYTSSPSVVFDGVHGIINGNEALPY 151 (485)
Q Consensus 83 -~~d~Vih~aa~~--------~~~~~~~~~~~~nv~~t~~ll~a~~~~~--v~r~V~~SS~~vy~~~~~~~~~~~e~~~~ 151 (485)
+.|++||+||.. ...++++..+++|+.++.++.+++...- -.++|++||...+.
T Consensus 58 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~~sS~~~~~--------------- 122 (223)
T 3uce_A 58 GAFDHLIVTAGSYAPAGKVVDVEVTQAKYAFDTKFWGAVLAAKHGARYLKQGGSITLTSGMLSRK--------------- 122 (223)
T ss_dssp CSEEEEEECCCCCCCCSCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGEEEEEEEEEECCGGGTS---------------
T ss_pred CCCCEEEECCCCCCCCCCcccCCHHHHHhhheeeeeeHHHHHHHHHhhccCCeEEEEecchhhcc---------------
Confidence 589999999943 1233567789999999999999998752 24899999987763
Q ss_pred CCCCCchHHHHHHHHHHHHHHHhCCCC-ceEEEEecCCcccCCCCCChHH----HHHHHHcCCCeEEecCCCceeecccH
Q 047227 152 PPKHNDFYSATKAEGEALVIKANGTNG-LLTCCIRPSSIFGPGDRLLVPS----LVAAARAGKSKFIIGDGNNVYDFTYV 226 (485)
Q Consensus 152 ~~~~~~~Y~~sK~~~E~~~~~~~~~~g-~~~~ilRp~~v~Gp~~~~~~~~----~~~~~~~g~~~~~~g~g~~~~~~i~v 226 (485)
+..+...|+.+|...|.+.+.++.+.+ +++.+++||.+..+........ +........ ....+.++
T Consensus 123 ~~~~~~~Y~asK~a~~~~~~~la~e~~~i~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~ 193 (223)
T 3uce_A 123 VVANTYVKAAINAAIEATTKVLAKELAPIRVNAISPGLTKTEAYKGMNADDRDAMYQRTQSHL---------PVGKVGEA 193 (223)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHHHTTSEEEEEEECSBCSGGGTTSCHHHHHHHHHHHHHHS---------TTCSCBCH
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeCCCcchhhhhcchhhHHHHHHHHhhcC---------CCCCccCH
Confidence 234567899999999999988876543 9999999999998754332222 222222222 22457789
Q ss_pred HHHHHHHHHHHHHhccccchhhccCCcEEEeeCCCCc
Q 047227 227 ANVAHAHICAERALASEVTVAEKAAGQAYFVTNMESI 263 (485)
Q Consensus 227 ~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~~ 263 (485)
+|+|++++.++. .....|+.+++.++..+
T Consensus 194 ~dvA~~~~~l~~--------~~~~tG~~i~vdgG~~~ 222 (223)
T 3uce_A 194 SDIAMAYLFAIQ--------NSYMTGTVIDVDGGALL 222 (223)
T ss_dssp HHHHHHHHHHHH--------CTTCCSCEEEESTTGGG
T ss_pred HHHHHHHHHHcc--------CCCCCCcEEEecCCeec
Confidence 999999998876 23367999999887544
|
| >4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.9e-20 Score=179.38 Aligned_cols=222 Identities=14% Similarity=0.142 Sum_probs=161.3
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhh-cCCCeEEEEecCCCHHHHHHHhc-
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEAL-RSGRAHYVSFDLRHKAQVLQALQ- 82 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~- 82 (485)
.++|++|||||+|+||+++++.|.++| ++|.+.+|....... ...... ...++.++.+|++|++++.++++
T Consensus 24 l~gk~~lVTGas~gIG~aia~~la~~G-~~V~~~~r~~~~~~~------~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~ 96 (271)
T 4ibo_A 24 LGGRTALVTGSSRGLGRAMAEGLAVAG-ARILINGTDPSRVAQ------TVQEFRNVGHDAEAVAFDVTSESEIIEAFAR 96 (271)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTT-CEEEECCSCHHHHHH------HHHHHHHTTCCEEECCCCTTCHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHH------HHHHHHhcCCceEEEEcCCCCHHHHHHHHHH
Confidence 457899999999999999999999999 699998886432111 011111 13578899999999999888875
Q ss_pred ------CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHHHh----cCCCEEEEecCccccccCCCCcCCC
Q 047227 83 ------GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDACAE----LKVKRLIYTSSPSVVFDGVHGIING 145 (485)
Q Consensus 83 ------~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~~~----~~v~r~V~~SS~~vy~~~~~~~~~~ 145 (485)
+.|+|||+||... +.++++..+++|+.++.++.+++.. .+..++|++||...+.
T Consensus 97 ~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iV~isS~~~~~--------- 167 (271)
T 4ibo_A 97 LDEQGIDVDILVNNAGIQFRKPMIELETADWQRVIDTNLTSAFMIGREAAKRMIPRGYGKIVNIGSLTSEL--------- 167 (271)
T ss_dssp HHHHTCCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS---------
T ss_pred HHHHCCCCCEEEECCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEccHHhCC---------
Confidence 6899999999321 3345677899999999999777654 3567999999976652
Q ss_pred CCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCCh--HHHHHHHHcCCCeEEecCCCce
Q 047227 146 NEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLLV--PSLVAAARAGKSKFIIGDGNNV 220 (485)
Q Consensus 146 ~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~~--~~~~~~~~~g~~~~~~g~g~~~ 220 (485)
+..+...|+.+|...+.+.+.++.+ .|+++.+++||.+..+...... +.+........ ..
T Consensus 168 ------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~---------p~ 232 (271)
T 4ibo_A 168 ------ARATVAPYTVAKGGIKMLTRAMAAEWAQYGIQANAIGPGYMLTDMNQALIDNPEFDAWVKART---------PA 232 (271)
T ss_dssp ------BCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGGGHHHHHCHHHHHHHHHHS---------TT
T ss_pred ------CCCCchhHHHHHHHHHHHHHHHHHHHhhhCeEEEEEEeccEeCcchhhcccCHHHHHHHHhcC---------CC
Confidence 1345678999999999998887654 6899999999999887432111 12222222222 22
Q ss_pred eecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCCCc
Q 047227 221 YDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMESI 263 (485)
Q Consensus 221 ~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~~ 263 (485)
..+..++|+|++++.++.... .-..|+.+++.+|...
T Consensus 233 ~r~~~pedva~~v~~L~s~~~------~~itG~~i~vdGG~~~ 269 (271)
T 4ibo_A 233 KRWGKPQELVGTAVFLSASAS------DYVNGQIIYVDGGMLS 269 (271)
T ss_dssp CSCBCGGGGHHHHHHHHSGGG------TTCCSCEEEESTTGGG
T ss_pred CCCcCHHHHHHHHHHHhCccc------cCCCCcEEEECCCeec
Confidence 346779999999998765222 2267999999887543
|
| >1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.83 E-value=1.1e-19 Score=175.13 Aligned_cols=223 Identities=12% Similarity=0.052 Sum_probs=157.6
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhc--CC---CeEEEEecCCCHHHHHH
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALR--SG---RAHYVSFDLRHKAQVLQ 79 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~--~~---~v~~~~~Dl~d~~~l~~ 79 (485)
.++|++|||||+|+||+++++.|+++| ++|++++|....... ....+. .. ++.++.+|++|++++.+
T Consensus 4 l~~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~-------~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~ 75 (280)
T 1xkq_A 4 FSNKTVIITGSSNGIGRTTAILFAQEG-ANVTITGRSSERLEE-------TRQIILKSGVSEKQVNSVVADVTTEDGQDQ 75 (280)
T ss_dssp TTTCEEEETTCSSHHHHHHHHHHHHTT-CEEEEEESCHHHHHH-------HHHHHHTTTCCGGGEEEEECCTTSHHHHHH
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCC-CEEEEEeCCHHHHHH-------HHHHHHHcCCCCcceEEEEecCCCHHHHHH
Confidence 467899999999999999999999999 699999887532110 111111 12 68899999999998887
Q ss_pred Hhc-------CCCEEEEcCCCCC-----------CCCchhhhHHHHHHHHHHHHHHHHhc----CCCEEEEecCcccccc
Q 047227 80 ALQ-------GAEVVFHMAAPNS-----------SINNHKLHHSVNVEGTKNVIDACAEL----KVKRLIYTSSPSVVFD 137 (485)
Q Consensus 80 ~~~-------~~d~Vih~aa~~~-----------~~~~~~~~~~~nv~~t~~ll~a~~~~----~v~r~V~~SS~~vy~~ 137 (485)
+++ ++|+|||+||... ..++++..+++|+.++.++.+++... + +++|++||...+..
T Consensus 76 ~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-g~iv~isS~~~~~~ 154 (280)
T 1xkq_A 76 IINSTLKQFGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVIEMTKKVKPHLVASK-GEIVNVSSIVAGPQ 154 (280)
T ss_dssp HHHHHHHHHSCCCEEEECCCCCCCCTTCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEECCGGGSSS
T ss_pred HHHHHHHhcCCCCEEEECCCCCCCCCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHhhcCC-CcEEEecCccccCC
Confidence 775 5899999999322 12246678999999999999887653 4 79999999877531
Q ss_pred CCCCcCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhC---CCCceEEEEecCCcccCCCCCC--hHH----HHHHHHcC
Q 047227 138 GVHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANG---TNGLLTCCIRPSSIFGPGDRLL--VPS----LVAAARAG 208 (485)
Q Consensus 138 ~~~~~~~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~---~~g~~~~ilRp~~v~Gp~~~~~--~~~----~~~~~~~g 208 (485)
. ..+...|+.+|...+.+.+.++. .+|+++.+++||.+.++..... ... .......-
T Consensus 155 ~--------------~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~ 220 (280)
T 1xkq_A 155 A--------------QPDFLYYAIAKAALDQYTRSTAIDLAKFGIRVNSVSPGMVETGFTNAMGMPDQASQKFYNFMASH 220 (280)
T ss_dssp C--------------CCSSHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCBCSSHHHHTTCCHHHHHHHHHHHHHC
T ss_pred C--------------CCcccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEeeCcCcCCcccccccccccccchHHHHHHH
Confidence 0 13457899999999999888763 4689999999999998742111 000 00011111
Q ss_pred CCeEEecCCCceeecccHHHHHHHHHHHHHHh-ccccchhhccCCcEEEeeCCCC
Q 047227 209 KSKFIIGDGNNVYDFTYVANVAHAHICAERAL-ASEVTVAEKAAGQAYFVTNMES 262 (485)
Q Consensus 209 ~~~~~~g~g~~~~~~i~v~D~a~a~~~~~~~~-~~~~~~~~~~~g~~ynv~~~~~ 262 (485)
. .......+.+++|+|++++.++... .. ...|+.+++.++..
T Consensus 221 ~------~~~p~~~~~~pedvA~~v~~l~s~~~~~------~~tG~~i~vdgG~~ 263 (280)
T 1xkq_A 221 K------ECIPIGAAGKPEHIANIILFLADRNLSF------YILGQSIVADGGTS 263 (280)
T ss_dssp T------TTCTTSSCBCHHHHHHHHHHHHCHHHHT------TCCSCEEEESTTGG
T ss_pred H------cCCCCCCCCCHHHHHHHHHHhcCccccc------CccCCeEEECCCcc
Confidence 0 1112345889999999999886521 11 25689999988743
|
| >3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.6e-19 Score=171.08 Aligned_cols=203 Identities=14% Similarity=0.120 Sum_probs=154.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc---
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ--- 82 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 82 (485)
++|++|||||+|+||+++++.|+++| ++|.+++|..... ....+.+|++|.+++.++++
T Consensus 21 m~k~vlITGas~gIG~~la~~l~~~G-~~V~~~~r~~~~~-----------------~~~~~~~d~~d~~~v~~~~~~~~ 82 (251)
T 3orf_A 21 MSKNILVLGGSGALGAEVVKFFKSKS-WNTISIDFRENPN-----------------ADHSFTIKDSGEEEIKSVIEKIN 82 (251)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSCCTT-----------------SSEEEECSCSSHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEeCCcccc-----------------cccceEEEeCCHHHHHHHHHHHH
Confidence 46799999999999999999999999 6899999875411 12457889999998887764
Q ss_pred ----CCCEEEEcCCCCC--------CCCchhhhHHHHHHHHHHHHHHHHhcC--CCEEEEecCccccccCCCCcCCCCCC
Q 047227 83 ----GAEVVFHMAAPNS--------SINNHKLHHSVNVEGTKNVIDACAELK--VKRLIYTSSPSVVFDGVHGIINGNEA 148 (485)
Q Consensus 83 ----~~d~Vih~aa~~~--------~~~~~~~~~~~nv~~t~~ll~a~~~~~--v~r~V~~SS~~vy~~~~~~~~~~~e~ 148 (485)
++|+|||+||... ..++++..+++|+.++.++.+++...- -.++|++||...+.
T Consensus 83 ~~~g~iD~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~------------ 150 (251)
T 3orf_A 83 SKSIKVDTFVCAAGGWSGGNASSDEFLKSVKGMIDMNLYSAFASAHIGAKLLNQGGLFVLTGASAALN------------ 150 (251)
T ss_dssp TTTCCEEEEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGS------------
T ss_pred HHcCCCCEEEECCccCCCCCcccccCHHHHHHHHHHHhHHHHHHHHHHHHhhccCCEEEEEechhhcc------------
Confidence 3799999999321 123556788999999999999988752 24899999987762
Q ss_pred CCCCCCCCchHHHHHHHHHHHHHHHhCC-----CCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCceeec
Q 047227 149 LPYPPKHNDFYSATKAEGEALVIKANGT-----NGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDF 223 (485)
Q Consensus 149 ~~~~~~~~~~Y~~sK~~~E~~~~~~~~~-----~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~ 223 (485)
+..+...|+.+|+..|.+.+.++.+ .++++.+++||.+.++. ...... ......+
T Consensus 151 ---~~~~~~~Y~~sKaa~~~~~~~la~e~~~~~~gi~v~~v~PG~v~t~~--------~~~~~~---------~~~~~~~ 210 (251)
T 3orf_A 151 ---RTSGMIAYGATKAATHHIIKDLASENGGLPAGSTSLGILPVTLDTPT--------NRKYMS---------DANFDDW 210 (251)
T ss_dssp ---CCTTBHHHHHHHHHHHHHHHHHTSTTSSSCTTCEEEEEEESCBCCHH--------HHHHCT---------TSCGGGS
T ss_pred ---CCCCCchhHHHHHHHHHHHHHHHHHhcccCCCcEEEEEecCcCcCcc--------hhhhcc---------ccccccc
Confidence 2345678999999999999998876 57999999999987652 111111 1234568
Q ss_pred ccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCCCc
Q 047227 224 TYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMESI 263 (485)
Q Consensus 224 i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~~ 263 (485)
++++|+|++++.++.... .....|+.+++.+++..
T Consensus 211 ~~~~dva~~i~~l~~~~~-----~~~~tG~~i~v~~g~~~ 245 (251)
T 3orf_A 211 TPLSEVAEKLFEWSTNSD-----SRPTNGSLVKFETKSKV 245 (251)
T ss_dssp BCHHHHHHHHHHHHHCGG-----GCCCTTCEEEEEEETTE
T ss_pred CCHHHHHHHHHHHhcCcc-----ccCCcceEEEEecCCcc
Confidence 899999999999877311 12367999999876543
|
| >1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.83 E-value=1.8e-19 Score=172.59 Aligned_cols=222 Identities=18% Similarity=0.157 Sum_probs=157.7
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc--
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ-- 82 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 82 (485)
.++|++|||||+|+||+++++.|+++| ++|.+++|...... . .... ..++.++.+|++|++++.++++
T Consensus 7 l~~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~----~---~~~~--~~~~~~~~~Dv~d~~~v~~~~~~~ 76 (270)
T 1yde_A 7 YAGKVVVVTGGGRGIGAGIVRAFVNSG-ARVVICDKDESGGR----A---LEQE--LPGAVFILCDVTQEDDVKTLVSET 76 (270)
T ss_dssp TTTCEEEEETCSSHHHHHHHHHHHHTT-CEEEEEESCHHHHH----H---HHHH--CTTEEEEECCTTSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHH----H---HHHH--hcCCeEEEcCCCCHHHHHHHHHHH
Confidence 457899999999999999999999999 68999988643110 0 1111 2358899999999998888775
Q ss_pred -----CCCEEEEcCCCCC--------CCCchhhhHHHHHHHHHHHHHHHHhc---CCCEEEEecCccccccCCCCcCCCC
Q 047227 83 -----GAEVVFHMAAPNS--------SINNHKLHHSVNVEGTKNVIDACAEL---KVKRLIYTSSPSVVFDGVHGIINGN 146 (485)
Q Consensus 83 -----~~d~Vih~aa~~~--------~~~~~~~~~~~nv~~t~~ll~a~~~~---~v~r~V~~SS~~vy~~~~~~~~~~~ 146 (485)
++|+|||+||... ..++++..+++|+.++.++.+++... +.+++|++||...+..
T Consensus 77 ~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~~--------- 147 (270)
T 1yde_A 77 IRRFGRLDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKSQGNVINISSLVGAIG--------- 147 (270)
T ss_dssp HHHHSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCHHHHHC---------
T ss_pred HHHcCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCEEEEEcCccccCC---------
Confidence 6899999999432 12245678999999999999988642 2479999999765431
Q ss_pred CCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCC------ChHHHHHHHHcCCCeEEecCC
Q 047227 147 EALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRL------LVPSLVAAARAGKSKFIIGDG 217 (485)
Q Consensus 147 e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~------~~~~~~~~~~~g~~~~~~g~g 217 (485)
......|+.+|...|.+.+.++.+ +|+++.++|||.++++.... .............
T Consensus 148 ------~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~-------- 213 (270)
T 1yde_A 148 ------QAQAVPYVATKGAVTAMTKALALDESPYGVRVNCISPGNIWTPLWEELAALMPDPRASIREGMLAQ-------- 213 (270)
T ss_dssp ------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCHHHHHHHTTSSSHHHHHHHHHHTS--------
T ss_pred ------CCCCcccHHHHHHHHHHHHHHHHHhhhhCcEEEEEEeCccccchhhhhhhcccchHHHHHHHhhcC--------
Confidence 224568999999999999887643 68999999999999873110 0000011011111
Q ss_pred CceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCCCccHHH
Q 047227 218 NNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMESIKFWE 267 (485)
Q Consensus 218 ~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~~t~~e 267 (485)
....+..++|+|++++.++.. .+ -..|+.+++.++..+.+.+
T Consensus 214 -p~~r~~~p~dva~~v~~L~s~-~~------~itG~~i~vdGG~~~~~~~ 255 (270)
T 1yde_A 214 -PLGRMGQPAEVGAAAVFLASE-AN------FCTGIELLVTGGAELGYGC 255 (270)
T ss_dssp -TTSSCBCHHHHHHHHHHHHHH-CT------TCCSCEEEESTTTTSCC--
T ss_pred -CCCCCcCHHHHHHHHHHHccc-CC------CcCCCEEEECCCeecccCc
Confidence 122467899999999988763 22 2678999999887665443
|
| >4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=8.9e-21 Score=182.38 Aligned_cols=225 Identities=17% Similarity=0.157 Sum_probs=161.5
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc--
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ-- 82 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 82 (485)
.++|++|||||+|.||+++++.|.++| ++|.+++|..........+ +.. ....++.++.+|++|++++.++++
T Consensus 25 l~~k~~lVTGas~GIG~aia~~l~~~G-~~V~~~~r~~~~~~~~~~~---~~~-~~~~~~~~~~~Dv~~~~~v~~~~~~~ 99 (277)
T 4fc7_A 25 LRDKVAFITGGGSGIGFRIAEIFMRHG-CHTVIASRSLPRVLTAARK---LAG-ATGRRCLPLSMDVRAPPAVMAAVDQA 99 (277)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHTTT-CEEEEEESCHHHHHHHHHH---HHH-HHSSCEEEEECCTTCHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHH---HHH-hcCCcEEEEEcCCCCHHHHHHHHHHH
Confidence 457899999999999999999999999 6999998875321110000 100 124578999999999998887775
Q ss_pred -----CCCEEEEcCCCC-------CCCCchhhhHHHHHHHHHHHHHHHHh----cCCCEEEEecCccccccCCCCcCCCC
Q 047227 83 -----GAEVVFHMAAPN-------SSINNHKLHHSVNVEGTKNVIDACAE----LKVKRLIYTSSPSVVFDGVHGIINGN 146 (485)
Q Consensus 83 -----~~d~Vih~aa~~-------~~~~~~~~~~~~nv~~t~~ll~a~~~----~~v~r~V~~SS~~vy~~~~~~~~~~~ 146 (485)
+.|++||+||.. .+.++++..+++|+.++.++.+++.. .+..++|++||...+.
T Consensus 100 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~---------- 169 (277)
T 4fc7_A 100 LKEFGRIDILINCAAGNFLCPAGALSFNAFKTVMDIDTSGTFNVSRVLYEKFFRDHGGVIVNITATLGNR---------- 169 (277)
T ss_dssp HHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHCEEEEEECCSHHHH----------
T ss_pred HHHcCCCCEEEECCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEECchhhCC----------
Confidence 689999999932 13345678899999999999998743 3456999999987763
Q ss_pred CCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCC---CChHHHHHHHHcCCCeEEecCCCce
Q 047227 147 EALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDR---LLVPSLVAAARAGKSKFIIGDGNNV 220 (485)
Q Consensus 147 e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~---~~~~~~~~~~~~g~~~~~~g~g~~~ 220 (485)
+......|+.+|+..+.+.+.++.+ .|+++.+++||.+.++... .............. ..
T Consensus 170 -----~~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~---------p~ 235 (277)
T 4fc7_A 170 -----GQALQVHAGSAKAAVDAMTRHLAVEWGPQNIRVNSLAPGPISGTEGLRRLGGPQASLSTKVTAS---------PL 235 (277)
T ss_dssp -----TCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBSSSHHHHHHSCCHHHHHHHHHTS---------TT
T ss_pred -----CCCCcHHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEECCEecchhhhhccCCHHHHHHHhccC---------CC
Confidence 1234578999999999998877654 5899999999999986310 00112222222222 22
Q ss_pred eecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCCCcc
Q 047227 221 YDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMESIK 264 (485)
Q Consensus 221 ~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~~t 264 (485)
..+..++|+|++++.++.... .-..|+.+++.++..++
T Consensus 236 ~r~~~p~dvA~~v~fL~s~~~------~~itG~~i~vdGG~~~~ 273 (277)
T 4fc7_A 236 QRLGNKTEIAHSVLYLASPLA------SYVTGAVLVADGGAWLT 273 (277)
T ss_dssp SSCBCHHHHHHHHHHHHSGGG------TTCCSCEEEESTTHHHH
T ss_pred CCCcCHHHHHHHHHHHcCCcc------CCcCCCEEEECCCcccC
Confidence 347789999999998865221 22679999998875443
|
| >3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=99.83 E-value=4.5e-20 Score=179.60 Aligned_cols=208 Identities=18% Similarity=0.139 Sum_probs=145.8
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhh--cCCCeEEEEecCCCHHHHHHHhc
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEAL--RSGRAHYVSFDLRHKAQVLQALQ 82 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~Dl~d~~~l~~~~~ 82 (485)
.+++++|||||+|+||+++++.|+++| ++|++++|....... ....+ ...++.++.+|++|.+++.++++
T Consensus 29 l~gk~vlVTGas~gIG~~la~~l~~~G-~~V~~~~r~~~~~~~-------~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~ 100 (301)
T 3tjr_A 29 FDGRAAVVTGGASGIGLATATEFARRG-ARLVLSDVDQPALEQ-------AVNGLRGQGFDAHGVVCDVRHLDEMVRLAD 100 (301)
T ss_dssp STTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHH-------HHHHHHHTTCCEEEEECCTTCHHHHHHHHH
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHH-------HHHHHHhcCCceEEEEccCCCHHHHHHHHH
Confidence 456899999999999999999999999 699999887542111 11111 13578999999999998888775
Q ss_pred -------CCCEEEEcCCCC-------CCCCchhhhHHHHHHHHHHHHHHHHh----cC-CCEEEEecCccccccCCCCcC
Q 047227 83 -------GAEVVFHMAAPN-------SSINNHKLHHSVNVEGTKNVIDACAE----LK-VKRLIYTSSPSVVFDGVHGII 143 (485)
Q Consensus 83 -------~~d~Vih~aa~~-------~~~~~~~~~~~~nv~~t~~ll~a~~~----~~-v~r~V~~SS~~vy~~~~~~~~ 143 (485)
++|+|||+||.. .+.++++..+++|+.++.++++++.. .+ ..++|++||...+.
T Consensus 101 ~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~------- 173 (301)
T 3tjr_A 101 EAFRLLGGVDVVFSNAGIVVAGPLAQMNHDDWRWVIDIDLWGSIHAVEAFLPRLLEQGTGGHIAFTASFAGLV------- 173 (301)
T ss_dssp HHHHHHSSCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECCGGGTS-------
T ss_pred HHHHhCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCcEEEEeCchhhcC-------
Confidence 689999999943 23345677899999999999998643 34 46999999987763
Q ss_pred CCCCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCChHHHHH-----HHHcCCCeEEec
Q 047227 144 NGNEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLLVPSLVA-----AARAGKSKFIIG 215 (485)
Q Consensus 144 ~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~~~~~~~-----~~~~g~~~~~~g 215 (485)
+..+...|+.||...+.+.+.++.+ .|+++.+++||.+..+. ...... ......+...++
T Consensus 174 --------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~----~~~~~~~~~~~~~~~~~~~~~~~ 241 (301)
T 3tjr_A 174 --------PNAGLGTYGVAKYGVVGLAETLAREVKPNGIGVSVLCPMVVETKL----VSNSERIRGADYGMSATPEGAFG 241 (301)
T ss_dssp --------CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEECCSCCCSSH----HHHHHHHC---------------
T ss_pred --------CCCCchHHHHHHHHHHHHHHHHHHHhcccCcEEEEEECCcccccc----ccccccccchhhccccChhhhcc
Confidence 2345678999999999988876643 58999999999997652 111110 001111222223
Q ss_pred CCCceeecccHHHHHHHHHHHHHH
Q 047227 216 DGNNVYDFTYVANVAHAHICAERA 239 (485)
Q Consensus 216 ~g~~~~~~i~v~D~a~a~~~~~~~ 239 (485)
......++++++|+|++++.+++.
T Consensus 242 ~~~~~~~~~~pedvA~~i~~~l~~ 265 (301)
T 3tjr_A 242 PLPTQDESVSADDVARLTADAILA 265 (301)
T ss_dssp -------CCCHHHHHHHHHHHHHH
T ss_pred ccccccCCCCHHHHHHHHHHHHhc
Confidence 333456789999999999998773
|
| >3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=8.2e-19 Score=169.44 Aligned_cols=237 Identities=14% Similarity=0.099 Sum_probs=163.0
Q ss_pred CCCCCCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCcccc---------CCccchhhhhhhh--cCCCeEEEEe
Q 047227 1 MSGEENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIAL---------EPHEEQGILGEAL--RSGRAHYVSF 69 (485)
Q Consensus 1 M~~~~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~---------~~~~~~~~~~~~~--~~~~v~~~~~ 69 (485)
|+...++|++|||||+|.||+++++.|.++| ++|.+++|...... ...+........+ ...++.++.+
T Consensus 5 m~~~l~~k~~lVTGas~gIG~aia~~la~~G-~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (286)
T 3uve_A 5 MTGRVEGKVAFVTGAARGQGRSHAVRLAQEG-ADIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKGHNRRIVTAEV 83 (286)
T ss_dssp -CCTTTTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHTTTCCEEEEEC
T ss_pred CCcccCCCEEEEeCCCchHHHHHHHHHHHCC-CeEEEEeccccccccccccccccCCHHHHHHHHHHHhhcCCceEEEEc
Confidence 5556678999999999999999999999999 69999988642111 0011100011111 2357899999
Q ss_pred cCCCHHHHHHHhc-------CCCEEEEcCCCCC--------CCCchhhhHHHHHHHHHHHHHHHHhc----C-CCEEEEe
Q 047227 70 DLRHKAQVLQALQ-------GAEVVFHMAAPNS--------SINNHKLHHSVNVEGTKNVIDACAEL----K-VKRLIYT 129 (485)
Q Consensus 70 Dl~d~~~l~~~~~-------~~d~Vih~aa~~~--------~~~~~~~~~~~nv~~t~~ll~a~~~~----~-v~r~V~~ 129 (485)
|++|++++.++++ +.|++||+||... +.++++..+++|+.++.++.+++... + ..++|++
T Consensus 84 Dv~~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~i 163 (286)
T 3uve_A 84 DVRDYDALKAAVDSGVEQLGRLDIIVANAGIGNGGDTLDKTSEEDWTEMIDINLAGVWKTVKAGVPHMIAGGRGGSIILT 163 (286)
T ss_dssp CTTCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHhCCCCEEEECCcccCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCcEEEEE
Confidence 9999998888775 6999999999322 23356778999999999999887643 3 4589999
Q ss_pred cCccccccCCCCcCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCChHHHHHHHH
Q 047227 130 SSPSVVFDGVHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLLVPSLVAAAR 206 (485)
Q Consensus 130 SS~~vy~~~~~~~~~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~ 206 (485)
||...+. +......|+.+|...+.+.+.++.+ +|+++.+++||.+..+...... ......
T Consensus 164 sS~~~~~---------------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~--~~~~~~ 226 (286)
T 3uve_A 164 SSVGGLK---------------AYPHTGHYVAAKHGVVGLMRAFGVELGQHMIRVNSVHPTHVKTPMLHNEG--TFKMFR 226 (286)
T ss_dssp CCGGGTS---------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSTTTSSHH--HHHHHC
T ss_pred Cchhhcc---------------CCCCccHHHHHHHHHHHHHHHHHHHhcccCeEEEEEecCcccCCcccccc--hhhhcc
Confidence 9987763 1345678999999999998877654 6899999999999987543210 000000
Q ss_pred cC---CCe------EEecCCCceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCCC
Q 047227 207 AG---KSK------FIIGDGNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMES 262 (485)
Q Consensus 207 ~g---~~~------~~~g~g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~ 262 (485)
.. ... ........ ..+.+++|+|++++.++.... .-..|+.+++.+|..
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~p-~r~~~p~dvA~~v~fL~s~~a------~~itG~~i~vdGG~~ 284 (286)
T 3uve_A 227 PDLENPGPDDMAPICQMFHTLP-IPWVEPIDISNAVLFFASDEA------RYITGVTLPIDAGSC 284 (286)
T ss_dssp TTSSSCCHHHHHHHHHTTCSSS-CSCBCHHHHHHHHHHHHSGGG------TTCCSCEEEESTTGG
T ss_pred ccccccchhhHHHHHHhhhccC-CCcCCHHHHHHHHHHHcCccc------cCCcCCEEeECCccc
Confidence 00 000 00011112 468899999999998865221 226799999988754
|
| >3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=99.83 E-value=5.9e-19 Score=171.55 Aligned_cols=232 Identities=16% Similarity=0.100 Sum_probs=162.9
Q ss_pred CCCCCCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccC-----Cccc-hhhhhhh-hcCCCeEEEEecCCC
Q 047227 1 MSGEENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALE-----PHEE-QGILGEA-LRSGRAHYVSFDLRH 73 (485)
Q Consensus 1 M~~~~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~-----~~~~-~~~~~~~-~~~~~v~~~~~Dl~d 73 (485)
|+...++|++|||||+|.||.++++.|.++| ++|.+++|.+..... ..+. ....... ....++.++.+|++|
T Consensus 22 m~~~l~gk~~lVTGas~GIG~aia~~la~~G-~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~ 100 (299)
T 3t7c_A 22 MAGKVEGKVAFITGAARGQGRSHAITLAREG-ADIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEALGRRIIASQVDVRD 100 (299)
T ss_dssp CCCTTTTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTC
T ss_pred cccccCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEecccccccccccccCHHHHHHHHHHHHhcCCceEEEECCCCC
Confidence 5556678999999999999999999999999 699999886431100 0011 0011111 124578999999999
Q ss_pred HHHHHHHhc-------CCCEEEEcCCCCC--------CCCchhhhHHHHHHHHHHHHHHHHhc----C-CCEEEEecCcc
Q 047227 74 KAQVLQALQ-------GAEVVFHMAAPNS--------SINNHKLHHSVNVEGTKNVIDACAEL----K-VKRLIYTSSPS 133 (485)
Q Consensus 74 ~~~l~~~~~-------~~d~Vih~aa~~~--------~~~~~~~~~~~nv~~t~~ll~a~~~~----~-v~r~V~~SS~~ 133 (485)
.+++.++++ +.|++||+||... +.++++..+++|+.++.++.+++... + ..++|++||..
T Consensus 101 ~~~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~Iv~isS~~ 180 (299)
T 3t7c_A 101 FDAMQAAVDDGVTQLGRLDIVLANAALASEGTRLNRMDPKTWRDMIDVNLNGAWITARVAIPHIMAGKRGGSIVFTSSIG 180 (299)
T ss_dssp HHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTSCEEEEEECCGG
T ss_pred HHHHHHHHHHHHHHhCCCCEEEECCCCCCCCCchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEECChh
Confidence 998888775 5999999999321 23356789999999999999987543 3 56999999987
Q ss_pred ccccCCCCcCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCCh------------
Q 047227 134 VVFDGVHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLLV------------ 198 (485)
Q Consensus 134 vy~~~~~~~~~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~~------------ 198 (485)
.+. +......|+.+|+..+.+.+.++.+ .|+++.+++||.+..+......
T Consensus 181 ~~~---------------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~ 245 (299)
T 3t7c_A 181 GLR---------------GAENIGNYIASKHGLHGLMRTMALELGPRNIRVNIVCPSSVATPMLLNEPTYRMFRPDLENP 245 (299)
T ss_dssp GTS---------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCBSSTTTSSHHHHHHHCTTSSSC
T ss_pred hcc---------------CCCCcchHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCCccCccccccchhhhhhhhhccc
Confidence 752 1345678999999999998887654 4899999999999987543210
Q ss_pred --HHHHHHHHcCCCeEEecCCCceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCCC
Q 047227 199 --PSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMES 262 (485)
Q Consensus 199 --~~~~~~~~~g~~~~~~g~g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~ 262 (485)
.......... .... ..+..++|+|++++.++.... .-..|+.+++.+|..
T Consensus 246 ~~~~~~~~~~~~-------~~~p-~r~~~pedvA~~v~fL~s~~a------~~itG~~i~vdGG~~ 297 (299)
T 3t7c_A 246 TVEDFQVASRQM-------HVLP-IPYVEPADISNAILFLVSDDA------RYITGVSLPVDGGAL 297 (299)
T ss_dssp CHHHHHHHHHHH-------SSSS-CSCBCHHHHHHHHHHHHSGGG------TTCCSCEEEESTTGG
T ss_pred hhhHHHHHhhhh-------cccC-cCCCCHHHHHHHHHHHhCccc------ccCcCCEEeeCCCcc
Confidence 0000000000 1111 357889999999998865221 226799999988754
|
| >3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.82 E-value=2.9e-19 Score=171.77 Aligned_cols=238 Identities=13% Similarity=0.084 Sum_probs=161.4
Q ss_pred CCCCCCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCcccc------CCccc-hhhhhhh-hcCCCeEEEEecCC
Q 047227 1 MSGEENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIAL------EPHEE-QGILGEA-LRSGRAHYVSFDLR 72 (485)
Q Consensus 1 M~~~~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~------~~~~~-~~~~~~~-~~~~~v~~~~~Dl~ 72 (485)
|+...++|++|||||+|.||+++++.|.++| ++|.+++|...... ...+. ....... ....++.++.+|++
T Consensus 5 m~~~l~~k~~lVTGas~GIG~a~a~~la~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~ 83 (277)
T 3tsc_A 5 MAGKLEGRVAFITGAARGQGRAHAVRMAAEG-ADIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAANRRIVAAVVDTR 83 (277)
T ss_dssp --CTTTTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred cccccCCCEEEEECCccHHHHHHHHHHHHcC-CEEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCCC
Confidence 5556678999999999999999999999999 69999988532110 00011 0011111 12457899999999
Q ss_pred CHHHHHHHhc-------CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHHHh----cC-CCEEEEecCcc
Q 047227 73 HKAQVLQALQ-------GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDACAE----LK-VKRLIYTSSPS 133 (485)
Q Consensus 73 d~~~l~~~~~-------~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~~~----~~-v~r~V~~SS~~ 133 (485)
|.+++.++++ +.|++||+||... +.++++..+++|+.++.++.+++.. .+ -.++|++||..
T Consensus 84 ~~~~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~ 163 (277)
T 3tsc_A 84 DFDRLRKVVDDGVAALGRLDIIVANAGVAAPQAWDDITPEDFRDVMDINVTGTWNTVMAGAPRIIEGGRGGSIILISSAA 163 (277)
T ss_dssp CHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGG
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCCEEEEEccHh
Confidence 9998887775 4899999999322 3345677899999999999888543 33 45899999987
Q ss_pred ccccCCCCcCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCC-hHHHHHHHHcCC
Q 047227 134 VVFDGVHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLL-VPSLVAAARAGK 209 (485)
Q Consensus 134 vy~~~~~~~~~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~-~~~~~~~~~~g~ 209 (485)
.+. +......|+.||+..+.+.+.++.+ .|+++.+++||.+..+..... ............
T Consensus 164 ~~~---------------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~ 228 (277)
T 3tsc_A 164 GMK---------------MQPFMIHYTASKHAVTGLARAFAAELGKHSIRVNSVHPGPVNTPMGSGDMVTAVGQAMETNP 228 (277)
T ss_dssp GTS---------------CCSSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSGGGSHHHHHHHHHHHHTCG
T ss_pred hCC---------------CCCCchhhHHHHHHHHHHHHHHHHHhCccCeEEEEEEeCCCcCCcccchhhhhhhhcccccH
Confidence 753 1234578999999999999887654 589999999999987753321 111111111111
Q ss_pred Ce-EEecCCCceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCC
Q 047227 210 SK-FIIGDGNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNME 261 (485)
Q Consensus 210 ~~-~~~g~g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~ 261 (485)
.. ........ ..+.+++|+|++++.++.... .-..|+.+++.++.
T Consensus 229 ~~~~~~~~~~p-~r~~~pedvA~~v~~L~s~~~------~~itG~~i~vdGG~ 274 (277)
T 3tsc_A 229 QLSHVLTPFLP-DWVAEPEDIADTVCWLASDES------RKVTAAQIPVDQGS 274 (277)
T ss_dssp GGTTTTCCSSS-CSCBCHHHHHHHHHHHHSGGG------TTCCSCEEEESTTG
T ss_pred HHHHHhhhccC-CCCCCHHHHHHHHHHHhCccc------cCCcCCEEeeCCCc
Confidence 10 01111112 248899999999998865322 22678999998764
|
| >2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.82 E-value=1.6e-19 Score=172.13 Aligned_cols=219 Identities=20% Similarity=0.126 Sum_probs=159.2
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc--
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ-- 82 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 82 (485)
.++|++|||||+|+||+++++.|.++| ++|++++|....... ....+ ..++.++.+|++|++++.++++
T Consensus 4 l~~k~vlITGas~gIG~aia~~l~~~G-~~V~~~~r~~~~~~~-------~~~~~-~~~~~~~~~D~~~~~~v~~~~~~~ 74 (263)
T 2a4k_A 4 LSGKTILVTGAASGIGRAALDLFAREG-ASLVAVDREERLLAE-------AVAAL-EAEAIAVVADVSDPKAVEAVFAEA 74 (263)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHH-------HHHTC-CSSEEEEECCTTSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHH-------HHHHh-cCceEEEEcCCCCHHHHHHHHHHH
Confidence 467899999999999999999999999 699999887431100 11111 1468899999999998887775
Q ss_pred -----CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHHHhcC--CCEEEEecCccccccCCCCcCCCCCC
Q 047227 83 -----GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDACAELK--VKRLIYTSSPSVVFDGVHGIINGNEA 148 (485)
Q Consensus 83 -----~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~~~~~--v~r~V~~SS~~vy~~~~~~~~~~~e~ 148 (485)
+.|+|||+||... ..++++..+++|+.++.++.+++...- ..++|++||...++
T Consensus 75 ~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~------------ 142 (263)
T 2a4k_A 75 LEEFGRLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGSVAGLG------------ 142 (263)
T ss_dssp HHHHSCCCEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECCCTTCC------------
T ss_pred HHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEecchhcC------------
Confidence 4799999999322 223456788999999999999987652 35999999987751
Q ss_pred CCCCCCCCchHHHHHHHHHHHHHHHhC---CCCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCceeeccc
Q 047227 149 LPYPPKHNDFYSATKAEGEALVIKANG---TNGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFTY 225 (485)
Q Consensus 149 ~~~~~~~~~~Y~~sK~~~E~~~~~~~~---~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~ 225 (485)
..+...|+.+|...+.+.+.++. ..|++++++|||.+.++......+..........+ ...+.+
T Consensus 143 ----~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~p---------~~~~~~ 209 (263)
T 2a4k_A 143 ----AFGLAHYAAGKLGVVGLARTLALELARKGVRVNVLLPGLIQTPMTAGLPPWAWEQEVGASP---------LGRAGR 209 (263)
T ss_dssp ----HHHHHHHHHCSSHHHHHHHHHHHHHTTTTCEEEEEEECSBCCGGGTTSCHHHHHHHHHTST---------TCSCBC
T ss_pred ----CCCcHHHHHHHHHHHHHHHHHHHHhhhhCcEEEEEEeCcCcCchhhhcCHHHHHHHHhcCC---------CCCCcC
Confidence 12346899999988888877653 46899999999999987543322333332322221 124788
Q ss_pred HHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCCCc
Q 047227 226 VANVAHAHICAERALASEVTVAEKAAGQAYFVTNMESI 263 (485)
Q Consensus 226 v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~~ 263 (485)
++|+|++++.++.... .-..|+.+++.++..+
T Consensus 210 p~dvA~~v~~l~s~~~------~~~tG~~i~vdgG~~~ 241 (263)
T 2a4k_A 210 PEEVAQAALFLLSEES------AYITGQALYVDGGRSI 241 (263)
T ss_dssp HHHHHHHHHHHHSGGG------TTCCSCEEEESTTTTT
T ss_pred HHHHHHHHHHHhCccc------cCCcCCEEEECCCccc
Confidence 9999999998865211 2267899999887544
|
| >3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} | Back alignment and structure |
|---|
Probab=99.82 E-value=6.5e-20 Score=175.55 Aligned_cols=223 Identities=13% Similarity=0.056 Sum_probs=158.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhh-hcCCCeEEEEecCCCHHHHHHHhc--
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEA-LRSGRAHYVSFDLRHKAQVLQALQ-- 82 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~l~~~~~-- 82 (485)
+++++|||||+|+||+++++.|+++| ++|.+.++....... ...... ....++.++.+|++|.+++.++++
T Consensus 24 ~~k~vlITGas~gIG~~~a~~l~~~G-~~v~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~ 97 (269)
T 3gk3_A 24 AKRVAFVTGGMGGLGAAISRRLHDAG-MAVAVSHSERNDHVS-----TWLMHERDAGRDFKAYAVDVADFESCERCAEKV 97 (269)
T ss_dssp CCCEEEETTTTSHHHHHHHHHHHTTT-CEEEEEECSCHHHHH-----HHHHHHHTTTCCCEEEECCTTCHHHHHHHHHHH
T ss_pred cCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEcCCchHHHH-----HHHHHHHhcCCceEEEEecCCCHHHHHHHHHHH
Confidence 45789999999999999999999999 688888754321110 001111 123578999999999998887775
Q ss_pred -----CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHHHh----cCCCEEEEecCccccccCCCCcCCCC
Q 047227 83 -----GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDACAE----LKVKRLIYTSSPSVVFDGVHGIINGN 146 (485)
Q Consensus 83 -----~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~~~----~~v~r~V~~SS~~vy~~~~~~~~~~~ 146 (485)
+.|+|||+||... ..++++..+++|+.++.++.+++.. .+..++|++||...+.
T Consensus 98 ~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~---------- 167 (269)
T 3gk3_A 98 LADFGKVDVLINNAGITRDATFMKMTKGDWDAVMRTDLDAMFNVTKQFIAGMVERRFGRIVNIGSVNGSR---------- 167 (269)
T ss_dssp HHHHSCCSEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHH----------
T ss_pred HHHcCCCCEEEECCCcCCCcchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEeCChhhcc----------
Confidence 6999999999322 3345677899999999999888754 4567999999987763
Q ss_pred CCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCceeec
Q 047227 147 EALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDF 223 (485)
Q Consensus 147 e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~ 223 (485)
+..+...|+.+|+..+.+.+.++.+ .|+++.+++||.+..+.......... ... .........+
T Consensus 168 -----~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~----~~~----~~~~~~~~~~ 234 (269)
T 3gk3_A 168 -----GAFGQANYASAKAGIHGFTKTLALETAKRGITVNTVSPGYLATAMVEAVPQDVL----EAK----ILPQIPVGRL 234 (269)
T ss_dssp -----CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTTTC-----------CC----SGGGCTTSSC
T ss_pred -----CCCCcchHHHHHHHHHHHHHHHHHHhhhcCCEEEEEecCcccchhhhhhchhHH----HHH----hhhcCCcCCc
Confidence 1345678999999999988876643 58999999999998875443222111 100 1112233457
Q ss_pred ccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCCCc
Q 047227 224 TYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMESI 263 (485)
Q Consensus 224 i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~~ 263 (485)
.+++|+|++++.++.... .-..|+.+++.++..+
T Consensus 235 ~~p~dvA~~v~~L~s~~~------~~itG~~i~vdgG~~~ 268 (269)
T 3gk3_A 235 GRPDEVAALIAFLCSDDA------GFVTGADLAINGGMHM 268 (269)
T ss_dssp BCHHHHHHHHHHHTSTTC------TTCCSCEEEESTTSCC
T ss_pred cCHHHHHHHHHHHhCCCc------CCeeCcEEEECCCEeC
Confidence 789999999998765211 2267999999987654
|
| >1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.9e-19 Score=169.38 Aligned_cols=207 Identities=13% Similarity=0.088 Sum_probs=150.6
Q ss_pred CCCCCCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHH
Q 047227 1 MSGEENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQA 80 (485)
Q Consensus 1 M~~~~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~ 80 (485)
|+...++|++|||||+|+||+++++.|+++| ++|++++|..... .....++.+|++|++++.++
T Consensus 1 M~~~~~~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~---------------~~~~~~~~~D~~~~~~v~~~ 64 (241)
T 1dhr_A 1 MAASGEARRVLVYGGRGALGSRCVQAFRARN-WWVASIDVVENEE---------------ASASVIVKMTDSFTEQADQV 64 (241)
T ss_dssp -----CCCEEEEETTTSHHHHHHHHHHHTTT-CEEEEEESSCCTT---------------SSEEEECCCCSCHHHHHHHH
T ss_pred CCccCCCCEEEEECCCcHHHHHHHHHHHhCC-CEEEEEeCChhhc---------------cCCcEEEEcCCCCHHHHHHH
Confidence 6666678899999999999999999999999 6999998875421 01356778999999988877
Q ss_pred hc---------CCCEEEEcCCCCC--------CCCchhhhHHHHHHHHHHHHHHHHhcC--CCEEEEecCccccccCCCC
Q 047227 81 LQ---------GAEVVFHMAAPNS--------SINNHKLHHSVNVEGTKNVIDACAELK--VKRLIYTSSPSVVFDGVHG 141 (485)
Q Consensus 81 ~~---------~~d~Vih~aa~~~--------~~~~~~~~~~~nv~~t~~ll~a~~~~~--v~r~V~~SS~~vy~~~~~~ 141 (485)
++ ++|+|||+||... ..++++..+++|+.++.++.+++...- -.++|++||...+.
T Consensus 65 ~~~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~----- 139 (241)
T 1dhr_A 65 TAEVGKLLGDQKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLLTLAGAKAALD----- 139 (241)
T ss_dssp HHHHHHHHTTCCEEEEEECCCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGS-----
T ss_pred HHHHHHHhCCCCCCEEEEcccccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHhhccCCEEEEECCHHHcc-----
Confidence 65 5899999999422 113456788999999999999987641 25899999987763
Q ss_pred cCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhCC-----CCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecC
Q 047227 142 IINGNEALPYPPKHNDFYSATKAEGEALVIKANGT-----NGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGD 216 (485)
Q Consensus 142 ~~~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~-----~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~ 216 (485)
+..+...|+.+|...+.+.+.++.+ .|+++++++||.+-.+. .......
T Consensus 140 ----------~~~~~~~Y~asK~a~~~~~~~la~e~~~~~~gi~v~~v~PG~v~T~~--------~~~~~~~-------- 193 (241)
T 1dhr_A 140 ----------GTPGMIGYGMAKGAVHQLCQSLAGKNSGMPSGAAAIAVLPVTLDTPM--------NRKSMPE-------- 193 (241)
T ss_dssp ----------CCTTBHHHHHHHHHHHHHHHHHTSTTSSCCTTCEEEEEEESCEECHH--------HHHHSTT--------
T ss_pred ----------CCCCchHHHHHHHHHHHHHHHHHHHhccCCCCeEEEEEecCcccCcc--------ccccCcc--------
Confidence 1235678999999999999998764 46999999999886541 1111111
Q ss_pred CCceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCC
Q 047227 217 GNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNME 261 (485)
Q Consensus 217 g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~ 261 (485)
.....++..+|+|++++.++.... ....|+.+.+.++.
T Consensus 194 -~~~~~~~~~~~vA~~v~~l~~~~~------~~~~G~~~~v~g~~ 231 (241)
T 1dhr_A 194 -ADFSSWTPLEFLVETFHDWITGNK------RPNSGSLIQVVTTD 231 (241)
T ss_dssp -SCGGGSEEHHHHHHHHHHHHTTTT------CCCTTCEEEEEEET
T ss_pred -hhhccCCCHHHHHHHHHHHhcCCC------cCccceEEEEeCCC
Confidence 112346778999999988765211 22568888886653
|
| >3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=6.6e-20 Score=173.21 Aligned_cols=220 Identities=15% Similarity=0.085 Sum_probs=157.8
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc-
Q 047227 4 EENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ- 82 (485)
Q Consensus 4 ~~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~- 82 (485)
..++|++|||||+|.||+++++.|.++| ++|.+.+|....... ....+ ..++.++.+|++|++++.++++
T Consensus 3 ~l~gk~vlVTGas~gIG~a~a~~l~~~G-~~V~~~~r~~~~~~~-------~~~~~-~~~~~~~~~Dv~~~~~v~~~~~~ 73 (247)
T 3rwb_A 3 RLAGKTALVTGAAQGIGKAIAARLAADG-ATVIVSDINAEGAKA-------AAASI-GKKARAIAADISDPGSVKALFAE 73 (247)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEECSCHHHHHH-------HHHHH-CTTEEECCCCTTCHHHHHHHHHH
T ss_pred CcCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHH-------HHHHh-CCceEEEEcCCCCHHHHHHHHHH
Confidence 4567899999999999999999999999 689998886432110 11111 4578999999999998888775
Q ss_pred ------CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHH----HHhcC-CCEEEEecCccccccCCCCcCC
Q 047227 83 ------GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDA----CAELK-VKRLIYTSSPSVVFDGVHGIIN 144 (485)
Q Consensus 83 ------~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a----~~~~~-v~r~V~~SS~~vy~~~~~~~~~ 144 (485)
+.|++||+||... +.++++..+++|+.++.++.++ +++.+ ..++|++||...+.
T Consensus 74 ~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~-------- 145 (247)
T 3rwb_A 74 IQALTGGIDILVNNASIVPFVAWDDVDLDHWRKIIDVNLTGTFIVTRAGTDQMRAAGKAGRVISIASNTFFA-------- 145 (247)
T ss_dssp HHHHHSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCTHHHH--------
T ss_pred HHHHCCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCcEEEEECchhhcc--------
Confidence 6999999999322 2345677899999999999888 55555 57999999987763
Q ss_pred CCCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCcee
Q 047227 145 GNEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVY 221 (485)
Q Consensus 145 ~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~~ 221 (485)
+..+...|+.+|...+.+.+.++.+ +|+++.+++||.+..+................ .....
T Consensus 146 -------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~--------~~~~~ 210 (247)
T 3rwb_A 146 -------GTPNMAAYVAAKGGVIGFTRALATELGKYNITANAVTPGLIESDGVKASPHNEAFGFVEM--------LQAMK 210 (247)
T ss_dssp -------TCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHTSGGGGGHHHHHH--------HSSSC
T ss_pred -------CCCCchhhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcCcCccccccChhHHHHHHhc--------ccccC
Confidence 1235678999999999988877654 68999999999998753111100000000000 01123
Q ss_pred ecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCC
Q 047227 222 DFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNME 261 (485)
Q Consensus 222 ~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~ 261 (485)
.+..++|+|+++..++.... .-..|+.+++.++.
T Consensus 211 r~~~pedva~~v~~L~s~~~------~~itG~~i~vdGG~ 244 (247)
T 3rwb_A 211 GKGQPEHIADVVSFLASDDA------RWITGQTLNVDAGM 244 (247)
T ss_dssp SCBCHHHHHHHHHHHHSGGG------TTCCSCEEEESTTS
T ss_pred CCcCHHHHHHHHHHHhCccc------cCCCCCEEEECCCc
Confidence 45679999999998865221 22678999998763
|
| >3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.8e-19 Score=177.00 Aligned_cols=171 Identities=19% Similarity=0.139 Sum_probs=127.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhh--cCCCeEEEEecCCCHHHHHHHhc-
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEAL--RSGRAHYVSFDLRHKAQVLQALQ- 82 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~Dl~d~~~l~~~~~- 82 (485)
++|++|||||+|+||+++++.|+++| ++|++.+|...... ......+.... ...++.++.+|++|++++.++++
T Consensus 4 ~~k~vlVTGas~GIG~aia~~L~~~G-~~V~~~~r~~~~r~--~~~~~~l~~~~~~~~~~~~~~~~Dvtd~~~v~~~~~~ 80 (324)
T 3u9l_A 4 SKKIILITGASSGFGRLTAEALAGAG-HRVYASMRDIVGRN--ASNVEAIAGFARDNDVDLRTLELDVQSQVSVDRAIDQ 80 (324)
T ss_dssp -CCEEEESSCSSHHHHHHHHHHHHTT-CEEEEEESCTTTTT--HHHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEecCcccccC--HHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHH
Confidence 45799999999999999999999999 69998887532110 00000011111 24579999999999999888876
Q ss_pred ------CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHH----HhcCCCEEEEecCccccccCCCCcCCC
Q 047227 83 ------GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDAC----AELKVKRLIYTSSPSVVFDGVHGIING 145 (485)
Q Consensus 83 ------~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~----~~~~v~r~V~~SS~~vy~~~~~~~~~~ 145 (485)
++|+|||+||... +.++++..+++|+.|+.++++++ ++.+.+++|++||...++.
T Consensus 81 ~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~a~lp~m~~~~~g~iV~isS~~~~~~-------- 152 (324)
T 3u9l_A 81 IIGEDGRIDVLIHNAGHMVFGPAEAFTPEQFAELYDINVLSTQRVNRAALPHMRRQKHGLLIWISSSSSAGG-------- 152 (324)
T ss_dssp HHHHHSCCSEEEECCCCCBCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSC--------
T ss_pred HHHHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEecchhccC--------
Confidence 6999999999321 23356678899999999999998 6667789999999876531
Q ss_pred CCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCC
Q 047227 146 NEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPG 193 (485)
Q Consensus 146 ~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~ 193 (485)
+......|+.||...|.+.+.++.+ +|+++++++||.+.++.
T Consensus 153 ------~~~~~~~Y~asKaa~~~~~~~la~el~~~gI~v~~v~PG~v~t~~ 197 (324)
T 3u9l_A 153 ------TPPYLAPYFAAKAAMDAIAVQYARELSRWGIETSIIVPGAFTSGT 197 (324)
T ss_dssp ------CCSSCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECCC----
T ss_pred ------CCCcchhHHHHHHHHHHHHHHHHHHhhhhCcEEEEEECCccccCc
Confidence 1123568999999999999887654 69999999999998653
|
| >3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.3e-19 Score=171.61 Aligned_cols=207 Identities=14% Similarity=0.033 Sum_probs=138.8
Q ss_pred CCCCCCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhh-cCCCeEEEEecCCCHHHHHH
Q 047227 1 MSGEENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEAL-RSGRAHYVSFDLRHKAQVLQ 79 (485)
Q Consensus 1 M~~~~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~ 79 (485)
|+-+.+++++|||||+|.||+++++.|.++| ++|.+++|....... ...... ...++.++.+|++|++++.+
T Consensus 1 M~~~~~~k~vlVTGas~GIG~aia~~l~~~G-~~V~~~~r~~~~~~~------~~~~~~~~~~~~~~~~~Dv~~~~~v~~ 73 (252)
T 3h7a_A 1 MSLTPRNATVAVIGAGDYIGAEIAKKFAAEG-FTVFAGRRNGEKLAP------LVAEIEAAGGRIVARSLDARNEDEVTA 73 (252)
T ss_dssp ----CCSCEEEEECCSSHHHHHHHHHHHHTT-CEEEEEESSGGGGHH------HHHHHHHTTCEEEEEECCTTCHHHHHH
T ss_pred CCcCCCCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEeCCHHHHHH------HHHHHHhcCCeEEEEECcCCCHHHHHH
Confidence 6556678999999999999999999999999 699999986542111 011111 13578999999999999888
Q ss_pred Hhc------CCCEEEEcCCCC-------CCCCchhhhHHHHHHHHHHHHHHH----HhcCCCEEEEecCccccccCCCCc
Q 047227 80 ALQ------GAEVVFHMAAPN-------SSINNHKLHHSVNVEGTKNVIDAC----AELKVKRLIYTSSPSVVFDGVHGI 142 (485)
Q Consensus 80 ~~~------~~d~Vih~aa~~-------~~~~~~~~~~~~nv~~t~~ll~a~----~~~~v~r~V~~SS~~vy~~~~~~~ 142 (485)
+++ +.|++||+||.. .+.++++..+++|+.++.++.+++ ++.+..++|++||...+.
T Consensus 74 ~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~------ 147 (252)
T 3h7a_A 74 FLNAADAHAPLEVTIFNVGANVNFPILETTDRVFRKVWEMACWAGFVSGRESARLMLAHGQGKIFFTGATASLR------ 147 (252)
T ss_dssp HHHHHHHHSCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEEGGGTC------
T ss_pred HHHHHHhhCCceEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECCHHHcC------
Confidence 876 589999999932 223456778999999999988876 445567999999977652
Q ss_pred CCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceE-EEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCC
Q 047227 143 INGNEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLT-CCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGN 218 (485)
Q Consensus 143 ~~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~-~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~ 218 (485)
+......|+.||...+.+.+.++.+ .|+++ .+++||.+..+......+.... ......
T Consensus 148 ---------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~v~n~v~PG~v~T~~~~~~~~~~~~---------~~~~~~ 209 (252)
T 3h7a_A 148 ---------GGSGFAAFASAKFGLRAVAQSMARELMPKNIHVAHLIIDSGVDTAWVRERREQMFG---------KDALAN 209 (252)
T ss_dssp ---------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC--------------------------------
T ss_pred ---------CCCCCccHHHHHHHHHHHHHHHHHHhhhcCCEEEEEecCCccCChhhhccchhhhh---------hhhhcC
Confidence 2245678999999999998877644 57999 8999999876643322111111 111112
Q ss_pred ceeecccHHHHHHHHHHHHHH
Q 047227 219 NVYDFTYVANVAHAHICAERA 239 (485)
Q Consensus 219 ~~~~~i~v~D~a~a~~~~~~~ 239 (485)
... +..++|+|++++.++..
T Consensus 210 ~~~-~~~pedvA~~~~~l~s~ 229 (252)
T 3h7a_A 210 PDL-LMPPAAVAGAYWQLYQQ 229 (252)
T ss_dssp -----CCHHHHHHHHHHHHHC
T ss_pred Ccc-CCCHHHHHHHHHHHHhC
Confidence 233 88999999999998763
|
| >3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A | Back alignment and structure |
|---|
Probab=99.82 E-value=3.1e-19 Score=170.94 Aligned_cols=222 Identities=13% Similarity=0.095 Sum_probs=158.7
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhh--cCCCeEEEEecCCCHHHHHHHh
Q 047227 4 EENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEAL--RSGRAHYVSFDLRHKAQVLQAL 81 (485)
Q Consensus 4 ~~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~Dl~d~~~l~~~~ 81 (485)
..++|++|||||+|+||+++++.|.++| ++|.+.++....... . ....+ ...++.++.+|++|++++.+++
T Consensus 15 ~l~~k~~lVTGas~gIG~aia~~l~~~G-~~V~~~~~~~~~~~~---~---~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~ 87 (270)
T 3is3_A 15 RLDGKVALVTGSGRGIGAAVAVHLGRLG-AKVVVNYANSTKDAE---K---VVSEIKALGSDAIAIKADIRQVPEIVKLF 87 (270)
T ss_dssp CCTTCEEEESCTTSHHHHHHHHHHHHTT-CEEEEEESSCHHHHH---H---HHHHHHHTTCCEEEEECCTTSHHHHHHHH
T ss_pred CcCCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEcCCCHHHHH---H---HHHHHHhcCCcEEEEEcCCCCHHHHHHHH
Confidence 4567899999999999999999999999 688887664321110 0 11111 2457899999999999888877
Q ss_pred c-------CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHHHhcCC--CEEEEecCccccccCCCCcCCC
Q 047227 82 Q-------GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDACAELKV--KRLIYTSSPSVVFDGVHGIING 145 (485)
Q Consensus 82 ~-------~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~~~~~v--~r~V~~SS~~vy~~~~~~~~~~ 145 (485)
+ +.|++||+||... +.++++..+++|+.++.++.+++...-. .++|++||.....
T Consensus 88 ~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS~~~~~--------- 158 (270)
T 3is3_A 88 DQAVAHFGHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRIVLTSSNTSKD--------- 158 (270)
T ss_dssp HHHHHHHSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECCTTTTT---------
T ss_pred HHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEEeCchhcc---------
Confidence 5 5899999999422 3346678899999999999999887643 4999999965321
Q ss_pred CCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCC------------ChHHHHHHHHcCCC
Q 047227 146 NEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRL------------LVPSLVAAARAGKS 210 (485)
Q Consensus 146 ~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~------------~~~~~~~~~~~g~~ 210 (485)
.+..+...|+.+|+..+.+.+.++.+ .|+++.+++||.+..+.... ............
T Consensus 159 -----~~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 231 (270)
T 3is3_A 159 -----FSVPKHSLYSGSKGAVDSFVRIFSKDCGDKKITVNAVAPGGTVTDMFHEVSHHYIPNGTSYTAEQRQQMAAHA-- 231 (270)
T ss_dssp -----CCCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSTTHHHHGGGGSTTGGGSCHHHHHHHHHHH--
T ss_pred -----CCCCCCchhHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCCccChhhhhhhhhccccccccchHHHHHHHHhc--
Confidence 02345678999999999998887654 58999999999998774210 011111112211
Q ss_pred eEEecCCCceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCC
Q 047227 211 KFIIGDGNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNME 261 (485)
Q Consensus 211 ~~~~g~g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~ 261 (485)
.....+.+++|+|++++.++... ..-..|+.+++.+|.
T Consensus 232 -------~p~~r~~~p~dvA~~v~~L~s~~------~~~itG~~i~vdGG~ 269 (270)
T 3is3_A 232 -------SPLHRNGWPQDVANVVGFLVSKE------GEWVNGKVLTLDGGA 269 (270)
T ss_dssp -------STTCSCBCHHHHHHHHHHHTSGG------GTTCCSCEEEESTTC
T ss_pred -------CCCCCCCCHHHHHHHHHHHcCCc------cCCccCcEEEeCCCC
Confidence 12335678999999999885421 122678999998763
|
| >1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.82 E-value=1.3e-19 Score=174.38 Aligned_cols=208 Identities=21% Similarity=0.148 Sum_probs=144.9
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc--
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ-- 82 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 82 (485)
.+++++|||||+|+||+++++.|+++| ++|++++|.......... .+.......++.++.+|++|++++.++++
T Consensus 30 l~~k~vlVTGasggIG~~la~~l~~~G-~~V~~~~r~~~~~~~~~~---~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~ 105 (279)
T 1xg5_A 30 WRDRLALVTGASGGIGAAVARALVQQG-LKVVGCARTVGNIEELAA---ECKSAGYPGTLIPYRCDLSNEEDILSMFSAI 105 (279)
T ss_dssp GTTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHH---HHHHTTCSSEEEEEECCTTCHHHHHHHHHHH
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEECChHHHHHHHH---HHHhcCCCceEEEEEecCCCHHHHHHHHHHH
Confidence 356899999999999999999999999 699999886432110000 01111112457889999999998888775
Q ss_pred -----CCCEEEEcCCCCC-------CCCchhhhHHHHHHH----HHHHHHHHHhcCC--CEEEEecCccccccCCCCcCC
Q 047227 83 -----GAEVVFHMAAPNS-------SINNHKLHHSVNVEG----TKNVIDACAELKV--KRLIYTSSPSVVFDGVHGIIN 144 (485)
Q Consensus 83 -----~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~----t~~ll~a~~~~~v--~r~V~~SS~~vy~~~~~~~~~ 144 (485)
++|+|||+||... ...+++..+++|+.+ ++++++++++.++ +++|++||...+..
T Consensus 106 ~~~~g~iD~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~~~~~g~iv~isS~~~~~~------- 178 (279)
T 1xg5_A 106 RSQHSGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKERNVDDGHIININSMSGHRV------- 178 (279)
T ss_dssp HHHHCCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCSCEEEEECCGGGTSC-------
T ss_pred HHhCCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCceEEEEcChhhccc-------
Confidence 6999999999321 223567789999999 7778888888875 79999999877521
Q ss_pred CCCCCCCCCCCCchHHHHHHHHHHHHHHHhC-----CCCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCc
Q 047227 145 GNEALPYPPKHNDFYSATKAEGEALVIKANG-----TNGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNN 219 (485)
Q Consensus 145 ~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~-----~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~ 219 (485)
.+..+...|+.+|...|.+.+.++. ..++++++++|+.+.++.. .. .......... ....
T Consensus 179 ------~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~~~i~v~~v~Pg~v~t~~~----~~----~~~~~~~~~~-~~~~ 243 (279)
T 1xg5_A 179 ------LPLSVTHFYSATKYAVTALTEGLRQELREAQTHIRATCISPGVVETQFA----FK----LHDKDPEKAA-ATYE 243 (279)
T ss_dssp ------CSCGGGHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCBCSSHH----HH----HTTTCHHHHH-HHHC
T ss_pred ------CCCCCCchhHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEecCcccchhh----hh----hcccChhHHh-hhcc
Confidence 0234557899999999988876653 4689999999999987631 00 0000000000 0001
Q ss_pred eeecccHHHHHHHHHHHHH
Q 047227 220 VYDFTYVANVAHAHICAER 238 (485)
Q Consensus 220 ~~~~i~v~D~a~a~~~~~~ 238 (485)
...+++++|+|++++.++.
T Consensus 244 ~~~~~~~~dvA~~i~~l~~ 262 (279)
T 1xg5_A 244 QMKCLKPEDVAEAVIYVLS 262 (279)
T ss_dssp ---CBCHHHHHHHHHHHHH
T ss_pred cccCCCHHHHHHHHHHHhc
Confidence 2347889999999998876
|
| >3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=2.5e-19 Score=171.14 Aligned_cols=226 Identities=16% Similarity=0.054 Sum_probs=158.7
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc-
Q 047227 4 EENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ- 82 (485)
Q Consensus 4 ~~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~- 82 (485)
..+++++|||||+|.||+++++.|.++| ++|.+.+|..........+ +.......++.++.+|++|.+++.++++
T Consensus 5 ~l~~k~~lVTGas~GIG~aia~~l~~~G-~~V~~~~r~~~~~~~~~~~---l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~ 80 (265)
T 3lf2_A 5 DLSEAVAVVTGGSSGIGLATVELLLEAG-AAVAFCARDGERLRAAESA---LRQRFPGARLFASVCDVLDALQVRAFAEA 80 (265)
T ss_dssp CCTTCEEEEETCSSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHH---HHHHSTTCCEEEEECCTTCHHHHHHHHHH
T ss_pred CcCCCEEEEeCCCChHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHH---HHHhcCCceEEEEeCCCCCHHHHHHHHHH
Confidence 4567899999999999999999999999 6899998875321110000 1111112358999999999998887764
Q ss_pred ------CCCEEEEcCCCC-------CCCCchhhhHHHHHHHHHHHHHHHHh----cCCCEEEEecCccccccCCCCcCCC
Q 047227 83 ------GAEVVFHMAAPN-------SSINNHKLHHSVNVEGTKNVIDACAE----LKVKRLIYTSSPSVVFDGVHGIING 145 (485)
Q Consensus 83 ------~~d~Vih~aa~~-------~~~~~~~~~~~~nv~~t~~ll~a~~~----~~v~r~V~~SS~~vy~~~~~~~~~~ 145 (485)
+.|++||+||.. .+.++++..+++|+.++.++.+++.. .+..++|++||...+.
T Consensus 81 ~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~--------- 151 (265)
T 3lf2_A 81 CERTLGCASILVNNAGQGRVSTFAETTDEAWSEELQLKFFSVIHPVRAFLPQLESRADAAIVCVNSLLASQ--------- 151 (265)
T ss_dssp HHHHHCSCSEEEECCCCCCCBCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTEEEEEEEEGGGTS---------
T ss_pred HHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEEEECCcccCC---------
Confidence 589999999932 23345677899999999999998754 3456899999977652
Q ss_pred CCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCC----------ChHHHHHHHHcCCCeE
Q 047227 146 NEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRL----------LVPSLVAAARAGKSKF 212 (485)
Q Consensus 146 ~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~----------~~~~~~~~~~~g~~~~ 212 (485)
+......|+.+|...+.+.+.++.+ .|+++.+++||.+..|.... ....+........
T Consensus 152 ------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 222 (265)
T 3lf2_A 152 ------PEPHMVATSAARAGVKNLVRSMAFEFAPKGVRVNGILIGLVESGQWRRRFEAREERELDWAQWTAQLARNK--- 222 (265)
T ss_dssp ------CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHHHHTC------CHHHHHHHHHHHT---
T ss_pred ------CCCCchhhHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCcCcCchhhhhhhhhhhhccCHHHHHHHHhhcc---
Confidence 2345678999999999998877644 48999999999998752110 0111111111110
Q ss_pred EecCCCceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCC
Q 047227 213 IIGDGNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNME 261 (485)
Q Consensus 213 ~~g~g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~ 261 (485)
......+..++|+|++++.++.... .-..|+.+++.++.
T Consensus 223 ----~~p~~r~~~pedvA~~v~fL~s~~~------~~itG~~i~vdGG~ 261 (265)
T 3lf2_A 223 ----QIPLGRLGKPIEAARAILFLASPLS------AYTTGSHIDVSGGL 261 (265)
T ss_dssp ----TCTTCSCBCHHHHHHHHHHHHSGGG------TTCCSEEEEESSSC
T ss_pred ----CCCcCCCcCHHHHHHHHHHHhCchh------cCcCCCEEEECCCC
Confidence 0122357789999999998865222 22679999998764
|
| >1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.82 E-value=2.6e-19 Score=167.88 Aligned_cols=203 Identities=15% Similarity=0.110 Sum_probs=150.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc---
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ--- 82 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 82 (485)
++|++|||||+|+||+++++.|.++| ++|++++|..... .....++.+|++|++++.++++
T Consensus 2 ~~k~vlITGas~gIG~~~a~~l~~~G-~~V~~~~r~~~~~---------------~~~~~~~~~D~~~~~~~~~~~~~~~ 65 (236)
T 1ooe_A 2 SSGKVIVYGGKGALGSAILEFFKKNG-YTVLNIDLSANDQ---------------ADSNILVDGNKNWTEQEQSILEQTA 65 (236)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHHHTT-EEEEEEESSCCTT---------------SSEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEecCcccc---------------ccccEEEeCCCCCHHHHHHHHHHHH
Confidence 35799999999999999999999999 6999998875421 0135677899999988877765
Q ss_pred ------CCCEEEEcCCCCC--------CCCchhhhHHHHHHHHHHHHHHHHhcC--CCEEEEecCccccccCCCCcCCCC
Q 047227 83 ------GAEVVFHMAAPNS--------SINNHKLHHSVNVEGTKNVIDACAELK--VKRLIYTSSPSVVFDGVHGIINGN 146 (485)
Q Consensus 83 ------~~d~Vih~aa~~~--------~~~~~~~~~~~nv~~t~~ll~a~~~~~--v~r~V~~SS~~vy~~~~~~~~~~~ 146 (485)
++|+|||+||... ..++++..+++|+.++.++.+++...- ..++|++||...+.
T Consensus 66 ~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~---------- 135 (236)
T 1ooe_A 66 SSLQGSQVDGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPGGLLQLTGAAAAMG---------- 135 (236)
T ss_dssp HHHTTCCEEEEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGS----------
T ss_pred HHhCCCCCCEEEECCcccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEECchhhcc----------
Confidence 5899999999322 123456788999999999999987641 24899999987762
Q ss_pred CCCCCCCCCCchHHHHHHHHHHHHHHHhCCC-----CceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCcee
Q 047227 147 EALPYPPKHNDFYSATKAEGEALVIKANGTN-----GLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVY 221 (485)
Q Consensus 147 e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~-----g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~~ 221 (485)
+..+...|+.+|...+.+.+.++.+. |++++++|||.+.++. ....... ....
T Consensus 136 -----~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~~gi~v~~v~Pg~v~t~~--------~~~~~~~---------~~~~ 193 (236)
T 1ooe_A 136 -----PTPSMIGYGMAKAAVHHLTSSLAAKDSGLPDNSAVLTIMPVTLDTPM--------NRKWMPN---------ADHS 193 (236)
T ss_dssp -----CCTTBHHHHHHHHHHHHHHHHHHSTTSSCCTTCEEEEEEESCBCCHH--------HHHHSTT---------CCGG
T ss_pred -----CCCCcHHHHHHHHHHHHHHHHHHHHhcccCCCeEEEEEecCcccCcc--------hhhcCCC---------cccc
Confidence 13456789999999999999887654 5999999999998762 1111111 1123
Q ss_pred ecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCC
Q 047227 222 DFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNME 261 (485)
Q Consensus 222 ~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~ 261 (485)
.++..+|+|++++.++.... .....|+.+++.++.
T Consensus 194 ~~~~~~dvA~~i~~~l~s~~-----~~~~~G~~~~v~gg~ 228 (236)
T 1ooe_A 194 SWTPLSFISEHLLKWTTETS-----SRPSSGALLKITTEN 228 (236)
T ss_dssp GCBCHHHHHHHHHHHHHCGG-----GCCCTTCEEEEEEET
T ss_pred ccCCHHHHHHHHHHHHcCCC-----cccccccEEEEecCC
Confidence 46778999999986653111 122568888887653
|
| >3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.82 E-value=1.8e-19 Score=172.47 Aligned_cols=227 Identities=13% Similarity=0.053 Sum_probs=163.5
Q ss_pred CCCCEEEEEcCC--CchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhh-hcCCCeEEEEecCCCHHHHHHHh
Q 047227 5 ENERLCVVTGGR--GFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEA-LRSGRAHYVSFDLRHKAQVLQAL 81 (485)
Q Consensus 5 ~~~~~iLVtGgt--G~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~l~~~~ 81 (485)
.++|+||||||+ |+||+++++.|.++| ++|.+++|..... +. .... ...+++.++.+|++|++++.+++
T Consensus 12 ~~~k~vlITGa~~~~giG~~ia~~l~~~G-~~V~~~~r~~~~~----~~---~~~~~~~~~~~~~~~~Dv~~~~~v~~~~ 83 (271)
T 3ek2_A 12 LDGKRILLTGLLSNRSIAYGIAKACKREG-AELAFTYVGDRFK----DR---ITEFAAEFGSELVFPCDVADDAQIDALF 83 (271)
T ss_dssp TTTCEEEECCCCSTTSHHHHHHHHHHHTT-CEEEEEESSGGGH----HH---HHHHHHHTTCCCEEECCTTCHHHHHHHH
T ss_pred cCCCEEEEeCCCCCCcHHHHHHHHHHHcC-CCEEEEecchhhH----HH---HHHHHHHcCCcEEEECCCCCHHHHHHHH
Confidence 467899999999 999999999999999 6999998873211 11 1111 12346889999999999888887
Q ss_pred c-------CCCEEEEcCCCC------------CCCCchhhhHHHHHHHHHHHHHHHHhcC--CCEEEEecCccccccCCC
Q 047227 82 Q-------GAEVVFHMAAPN------------SSINNHKLHHSVNVEGTKNVIDACAELK--VKRLIYTSSPSVVFDGVH 140 (485)
Q Consensus 82 ~-------~~d~Vih~aa~~------------~~~~~~~~~~~~nv~~t~~ll~a~~~~~--v~r~V~~SS~~vy~~~~~ 140 (485)
+ +.|++||+||.. ...+++...+++|+.++.++.+++...- ..++|++||...+.
T Consensus 84 ~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~~~~---- 159 (271)
T 3ek2_A 84 ASLKTHWDSLDGLVHSIGFAPREAIAGDFLDGLTRENFRIAHDISAYSFPALAKAALPMLSDDASLLTLSYLGAER---- 159 (271)
T ss_dssp HHHHHHCSCEEEEEECCCCCCGGGGSSCTTTTCCHHHHHHHHHHHTTHHHHHHHHHGGGEEEEEEEEEEECGGGTS----
T ss_pred HHHHHHcCCCCEEEECCccCccccccCccccccCHHHHHHHHhhhHHHHHHHHHHHHHHhccCceEEEEecccccc----
Confidence 5 579999999932 2334567789999999999999997652 34899999987753
Q ss_pred CcCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhC---CCCceEEEEecCCcccCCCCCCh--HHHHHHHHcCCCeEEec
Q 047227 141 GIINGNEALPYPPKHNDFYSATKAEGEALVIKANG---TNGLLTCCIRPSSIFGPGDRLLV--PSLVAAARAGKSKFIIG 215 (485)
Q Consensus 141 ~~~~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~---~~g~~~~ilRp~~v~Gp~~~~~~--~~~~~~~~~g~~~~~~g 215 (485)
+..+...|+.+|+..+.+.+.++. ..|+++.+++||.+..+...... +.+........+
T Consensus 160 -----------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~----- 223 (271)
T 3ek2_A 160 -----------AIPNYNTMGLAKAALEASVRYLAVSLGAKGVRVNAISAGPIKTLAASGIKSFGKILDFVESNSP----- 223 (271)
T ss_dssp -----------BCTTTTHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCC-----CCCHHHHHHHHHHHHHST-----
T ss_pred -----------CCCCccchhHHHHHHHHHHHHHHHHHHhcCcEEEEEecCcccchhhhcccchHHHHHHHHhcCC-----
Confidence 124567899999999999887764 35899999999999987544322 233333333322
Q ss_pred CCCceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCCCccHHHHH
Q 047227 216 DGNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMESIKFWEFV 269 (485)
Q Consensus 216 ~g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~~t~~el~ 269 (485)
...+..++|+|++++.++.... ....|+.+++.++..++..++.
T Consensus 224 ----~~~~~~pedva~~i~~l~s~~~------~~~tG~~i~vdgG~~~~~~~~~ 267 (271)
T 3ek2_A 224 ----LKRNVTIEQVGNAGAFLLSDLA------SGVTAEVMHVDSGFNAVVGGMA 267 (271)
T ss_dssp ----TSSCCCHHHHHHHHHHHHSGGG------TTCCSEEEEESTTGGGBCCCC-
T ss_pred ----cCCCCCHHHHHHHHHHHcCccc------CCeeeeEEEECCCeeeehhhhh
Confidence 2346779999999998865322 2367999999998776665543
|
| >3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.1e-19 Score=175.06 Aligned_cols=220 Identities=20% Similarity=0.157 Sum_probs=160.6
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc--
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ-- 82 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 82 (485)
.+++++|||||+|.||+++++.|+++| ++|++++|....... ....+ ..++.++.+|++|.+++.++++
T Consensus 28 l~~k~vlVTGas~GIG~aia~~l~~~G-~~Vi~~~r~~~~~~~-------~~~~~-~~~~~~~~~Dl~~~~~v~~~~~~~ 98 (281)
T 3ppi_A 28 FEGASAIVSGGAGGLGEATVRRLHADG-LGVVIADLAAEKGKA-------LADEL-GNRAEFVSTNVTSEDSVLAAIEAA 98 (281)
T ss_dssp GTTEEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHH-------HHHHH-CTTEEEEECCTTCHHHHHHHHHHH
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHCC-CEEEEEeCChHHHHH-------HHHHh-CCceEEEEcCCCCHHHHHHHHHHH
Confidence 456799999999999999999999999 689999886532110 11112 4578999999999998888775
Q ss_pred ----CCCEEEEcCC-CCC------------CCCchhhhHHHHHHHHHHHHHHHHhc----------CCCEEEEecCcccc
Q 047227 83 ----GAEVVFHMAA-PNS------------SINNHKLHHSVNVEGTKNVIDACAEL----------KVKRLIYTSSPSVV 135 (485)
Q Consensus 83 ----~~d~Vih~aa-~~~------------~~~~~~~~~~~nv~~t~~ll~a~~~~----------~v~r~V~~SS~~vy 135 (485)
+.|++||+++ ... ..+++...+++|+.++.++.+++... +..++|++||...+
T Consensus 99 ~~~~~id~lv~~aag~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~ 178 (281)
T 3ppi_A 99 NQLGRLRYAVVAHGGFGVAQRIVQRDGSPADMGGFTKTIDLYLNGTYNVARLVAASIAAAEPRENGERGALVLTASIAGY 178 (281)
T ss_dssp TTSSEEEEEEECCCCCCCCCCSBCTTSCBCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSCCCTTSCCEEEEEECCGGGT
T ss_pred HHhCCCCeEEEccCcccccccccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcccccCCCeEEEEEeccccc
Confidence 4799999954 211 11235788999999999999987632 23589999998776
Q ss_pred ccCCCCcCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeE
Q 047227 136 FDGVHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKF 212 (485)
Q Consensus 136 ~~~~~~~~~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~ 212 (485)
. +..+...|+.+|...+.+.+.++.+ .|+++.+++||.+..+......+..........+.
T Consensus 179 ~---------------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~- 242 (281)
T 3ppi_A 179 E---------------GQIGQTAYAAAKAGVIGLTIAAARDLSSAGIRVNTIAPGTMKTPIMESVGEEALAKFAANIPF- 242 (281)
T ss_dssp S---------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHTTCHHHHHHHHHTCCS-
T ss_pred C---------------CCCCCcccHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCcCCchhhhcccHHHHHHHHhcCCC-
Confidence 3 2345678999999999888776644 48999999999997653222223333333333221
Q ss_pred EecCCCceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCCCcc
Q 047227 213 IIGDGNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMESIK 264 (485)
Q Consensus 213 ~~g~g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~~t 264 (485)
...+.+++|+|++++.++. .....|+.+++.++..++
T Consensus 243 -------~~~~~~pedvA~~v~~l~s--------~~~~tG~~i~vdGG~~~~ 279 (281)
T 3ppi_A 243 -------PKRLGTPDEFADAAAFLLT--------NGYINGEVMRLDGAQRFT 279 (281)
T ss_dssp -------SSSCBCHHHHHHHHHHHHH--------CSSCCSCEEEESTTCCCC
T ss_pred -------CCCCCCHHHHHHHHHHHHc--------CCCcCCcEEEECCCcccC
Confidence 1357889999999999876 233779999999886553
|
| >3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.82 E-value=7.8e-20 Score=176.52 Aligned_cols=221 Identities=10% Similarity=0.050 Sum_probs=156.2
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCC--ceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDM--FSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ 82 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~ 82 (485)
.++|++|||||+|.||+++++.|+++|. ..|.+.+|.......... .+.......++.++.+|++|++++.++++
T Consensus 31 l~~k~~lVTGas~GIG~aia~~l~~~G~~~~~V~~~~r~~~~~~~~~~---~l~~~~~~~~~~~~~~Dv~d~~~v~~~~~ 107 (287)
T 3rku_A 31 LAKKTVLITGASAGIGKATALEYLEASNGDMKLILAARRLEKLEELKK---TIDQEFPNAKVHVAQLDITQAEKIKPFIE 107 (287)
T ss_dssp HTTCEEEEESTTSHHHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH---HHHHHCTTCEEEEEECCTTCGGGHHHHHH
T ss_pred cCCCEEEEecCCChHHHHHHHHHHHcCCCCceEEEEECCHHHHHHHHH---HHHhhCCCCeEEEEECCCCCHHHHHHHHH
Confidence 3568999999999999999999999983 288888887542111000 01111124578899999999998888875
Q ss_pred -------CCCEEEEcCCCCC--------CCCchhhhHHHHHHHHHHHHHHH----HhcCCCEEEEecCccccccCCCCcC
Q 047227 83 -------GAEVVFHMAAPNS--------SINNHKLHHSVNVEGTKNVIDAC----AELKVKRLIYTSSPSVVFDGVHGII 143 (485)
Q Consensus 83 -------~~d~Vih~aa~~~--------~~~~~~~~~~~nv~~t~~ll~a~----~~~~v~r~V~~SS~~vy~~~~~~~~ 143 (485)
+.|++||+||... ..++++..+++|+.++.++.+++ ++.+..++|++||...+.
T Consensus 108 ~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~IV~isS~~~~~------- 180 (287)
T 3rku_A 108 NLPQEFKDIDILVNNAGKALGSDRVGQIATEDIQDVFDTNVTALINITQAVLPIFQAKNSGDIVNLGSIAGRD------- 180 (287)
T ss_dssp TSCGGGCSCCEEEECCCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTS-------
T ss_pred HHHHhcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEECChhhcC-------
Confidence 4899999999322 23456789999999999999987 455677999999977652
Q ss_pred CCCCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCC----CChHHHHHHHHcCCCeEEecC
Q 047227 144 NGNEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDR----LLVPSLVAAARAGKSKFIIGD 216 (485)
Q Consensus 144 ~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~----~~~~~~~~~~~~g~~~~~~g~ 216 (485)
+..+...|+.+|...+.+.+.++.+ .|+++.+++||.+..+... ........ .....
T Consensus 181 --------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~~~~~~~~~~~~~-~~~~~------- 244 (287)
T 3rku_A 181 --------AYPTGSIYCASKFAVGAFTDSLRKELINTKIRVILIAPGLVETEFSLVRYRGNEEQAKN-VYKDT------- 244 (287)
T ss_dssp --------CCTTCHHHHHHHHHHHHHHHHHHHHTTTSSCEEEEEEESCEESSHHHHHTTTCHHHHHH-HHTTS-------
T ss_pred --------CCCCCchHHHHHHHHHHHHHHHHHHhhhcCCEEEEEeCCcCcCccccccccCcHHHHHH-hhccc-------
Confidence 2345678999999999998887654 6899999999999876310 00011111 11111
Q ss_pred CCceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCCC
Q 047227 217 GNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMES 262 (485)
Q Consensus 217 g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~ 262 (485)
..+.++|+|++++.++.... ....|+.+++.++++
T Consensus 245 -----~p~~pedvA~~v~~l~s~~~------~~i~g~~i~v~~g~~ 279 (287)
T 3rku_A 245 -----TPLMADDVADLIVYATSRKQ------NTVIADTLIFPTNQA 279 (287)
T ss_dssp -----CCEEHHHHHHHHHHHHTSCT------TEEEEEEEEEETTEE
T ss_pred -----CCCCHHHHHHHHHHHhCCCC------CeEecceEEeeCCCC
Confidence 12379999999998865321 125578888887653
|
| >4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.3e-19 Score=173.15 Aligned_cols=223 Identities=14% Similarity=0.096 Sum_probs=159.4
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc--
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ-- 82 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 82 (485)
.++|++|||||+|+||+++++.|.++| ++|.+.+|..........+ +.. ....++.++.+|++|++++.++++
T Consensus 18 l~~k~vlVTGas~gIG~aia~~l~~~G-~~V~~~~r~~~~~~~~~~~---l~~-~~~~~~~~~~~Dv~~~~~v~~~~~~~ 92 (266)
T 4egf_A 18 LDGKRALITGATKGIGADIARAFAAAG-ARLVLSGRDVSELDAARRA---LGE-QFGTDVHTVAIDLAEPDAPAELARRA 92 (266)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHH---HHH-HHCCCEEEEECCTTSTTHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHH---HHH-hcCCcEEEEEecCCCHHHHHHHHHHH
Confidence 356899999999999999999999999 6899998864321110000 111 024679999999999988877765
Q ss_pred -----CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHHHhc----C-CCEEEEecCccccccCCCCcCCC
Q 047227 83 -----GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDACAEL----K-VKRLIYTSSPSVVFDGVHGIING 145 (485)
Q Consensus 83 -----~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~~~~----~-v~r~V~~SS~~vy~~~~~~~~~~ 145 (485)
+.|++||+||... ..++++..+++|+.++.++.+++... + ..++|++||...+.
T Consensus 93 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~--------- 163 (266)
T 4egf_A 93 AEAFGGLDVLVNNAGISHPQPVVDTDPQLFDATIAVNLRAPALLASAVGKAMVAAGEGGAIITVASAAALA--------- 163 (266)
T ss_dssp HHHHTSCSEEEEECCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTS---------
T ss_pred HHHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEEcchhhcc---------
Confidence 6999999999332 23356678999999999998887543 3 35999999987763
Q ss_pred CCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCC--hHHHHHHHHcCCCeEEecCCCce
Q 047227 146 NEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLL--VPSLVAAARAGKSKFIIGDGNNV 220 (485)
Q Consensus 146 ~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~--~~~~~~~~~~g~~~~~~g~g~~~ 220 (485)
+..+...|+.+|...+.+.+.++.+ .|+++.+++||.+..+..... -+.......... ..
T Consensus 164 ------~~~~~~~Y~asK~a~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~---------p~ 228 (266)
T 4egf_A 164 ------PLPDHYAYCTSKAGLVMATKVLARELGPHGIRANSVCPTVVLTEMGQRVWGDEAKSAPMIARI---------PL 228 (266)
T ss_dssp ------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCBCSHHHHHHTCSHHHHHHHHTTC---------TT
T ss_pred ------CCCCChHHHHHHHHHHHHHHHHHHHHhhhCeEEEEEEeCCCcCchhhhhccChHHHHHHHhcC---------CC
Confidence 2345678999999999998877654 589999999999987631100 011222222221 23
Q ss_pred eecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCCC
Q 047227 221 YDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMES 262 (485)
Q Consensus 221 ~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~ 262 (485)
..+..++|+|++++.++.... .-..|+.+++.++..
T Consensus 229 ~r~~~p~dva~~v~~L~s~~~------~~itG~~i~vdGG~~ 264 (266)
T 4egf_A 229 GRFAVPHEVSDAVVWLASDAA------SMINGVDIPVDGGYT 264 (266)
T ss_dssp SSCBCHHHHHHHHHHHHSGGG------TTCCSCEEEESTTGG
T ss_pred CCCcCHHHHHHHHHHHhCchh------cCccCcEEEECCCcc
Confidence 357789999999998865322 226799999988754
|
| >1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.81 E-value=1.7e-19 Score=172.02 Aligned_cols=222 Identities=16% Similarity=0.141 Sum_probs=154.3
Q ss_pred CCCCCCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhc--CCCeEEEEecCCCHHHHH
Q 047227 1 MSGEENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALR--SGRAHYVSFDLRHKAQVL 78 (485)
Q Consensus 1 M~~~~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~Dl~d~~~l~ 78 (485)
|+...++|++|||||+|+||+++++.|+++| ++|.+++|....... ....+. ..++.++.+|++|++++.
T Consensus 1 m~~~l~~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~-------~~~~~~~~~~~~~~~~~D~~~~~~~~ 72 (262)
T 1zem_A 1 MSKKFNGKVCLVTGAGGNIGLATALRLAEEG-TAIALLDMNREALEK-------AEASVREKGVEARSYVCDVTSEEAVI 72 (262)
T ss_dssp --CTTTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHH-------HHHHHHTTTSCEEEEECCTTCHHHHH
T ss_pred CCcccCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHH-------HHHHHHhcCCcEEEEEecCCCHHHHH
Confidence 6666778999999999999999999999999 689999886432110 111111 346889999999999887
Q ss_pred HHhc-------CCCEEEEcCCCC-C-------CCCchhhhHHHHHHHHHHHHHHHHhc----CCCEEEEecCccccccCC
Q 047227 79 QALQ-------GAEVVFHMAAPN-S-------SINNHKLHHSVNVEGTKNVIDACAEL----KVKRLIYTSSPSVVFDGV 139 (485)
Q Consensus 79 ~~~~-------~~d~Vih~aa~~-~-------~~~~~~~~~~~nv~~t~~ll~a~~~~----~v~r~V~~SS~~vy~~~~ 139 (485)
++++ ++|+|||+||.. . ..++++..+++|+.++.++.+++... +.+++|++||...+..
T Consensus 73 ~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~-- 150 (262)
T 1zem_A 73 GTVDSVVRDFGKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQNYGRIVNTASMAGVKG-- 150 (262)
T ss_dssp HHHHHHHHHHSCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHSC--
T ss_pred HHHHHHHHHhCCCCEEEECCCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhccC--
Confidence 7765 689999999943 1 22345778999999999998887653 5679999999877631
Q ss_pred CCcCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhC---CCCceEEEEecCCcccCCCCCCh---------------HH-
Q 047227 140 HGIINGNEALPYPPKHNDFYSATKAEGEALVIKANG---TNGLLTCCIRPSSIFGPGDRLLV---------------PS- 200 (485)
Q Consensus 140 ~~~~~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~---~~g~~~~ilRp~~v~Gp~~~~~~---------------~~- 200 (485)
..+...|+.+|...+.+.+.++. ..|+++.+++||.+..+...... +.
T Consensus 151 -------------~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (262)
T 1zem_A 151 -------------PPNMAAYGTSKGAIIALTETAALDLAPYNIRVNAISPGYMGPGFMWERQVELQAKVGSQYFSTDPKV 217 (262)
T ss_dssp -------------CTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSSHHHHHHHHHHHHHTCTTSCSSHHH
T ss_pred -------------CCCCchHHHHHHHHHHHHHHHHHHHHhhCeEEEEEecCCcCcchhhhhccchhhhccccccccCHHH
Confidence 23456899999999888877653 35899999999998655211000 00
Q ss_pred HHHHHHcCCCeEEecCCCceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCC
Q 047227 201 LVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNM 260 (485)
Q Consensus 201 ~~~~~~~g~~~~~~g~g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~ 260 (485)
......... ....+..++|+|++++.++.... .-..|+.+.+.++
T Consensus 218 ~~~~~~~~~---------p~~r~~~p~dvA~~v~~l~s~~~------~~itG~~i~vdGG 262 (262)
T 1zem_A 218 VAQQMIGSV---------PMRRYGDINEIPGVVAFLLGDDS------SFMTGVNLPIAGG 262 (262)
T ss_dssp HHHHHHHTS---------TTSSCBCGGGSHHHHHHHHSGGG------TTCCSCEEEESCC
T ss_pred HHHHHHhcC---------CCCCCcCHHHHHHHHHHHcCchh------cCcCCcEEecCCC
Confidence 111111111 12236789999999998864211 2256888877653
|
| >3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.81 E-value=3.7e-19 Score=170.38 Aligned_cols=220 Identities=16% Similarity=0.122 Sum_probs=158.1
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhh--cCCCeEEEEecCCCHHHHHHHhc
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEAL--RSGRAHYVSFDLRHKAQVLQALQ 82 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~Dl~d~~~l~~~~~ 82 (485)
.++|++|||||+|+||+++++.|.++| ++|.+.++....... . ....+ ...++.++.+|++|++++.++++
T Consensus 29 l~gk~~lVTGas~GIG~aia~~la~~G-~~V~~~~~~~~~~~~---~---~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~ 101 (271)
T 3v2g_A 29 LAGKTAFVTGGSRGIGAAIAKRLALEG-AAVALTYVNAAERAQ---A---VVSEIEQAGGRAVAIRADNRDAEAIEQAIR 101 (271)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSCHHHHH---H---HHHHHHHTTCCEEEEECCTTCHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCCCHHHHH---H---HHHHHHhcCCcEEEEECCCCCHHHHHHHHH
Confidence 467899999999999999999999999 688888665321110 0 11111 14578899999999998888775
Q ss_pred -------CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHHHhc--CCCEEEEecCccccccCCCCcCCCC
Q 047227 83 -------GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDACAEL--KVKRLIYTSSPSVVFDGVHGIINGN 146 (485)
Q Consensus 83 -------~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~~~~--~v~r~V~~SS~~vy~~~~~~~~~~~ 146 (485)
+.|++||+||... +.++++..+++|+.++.++.+++... +..++|++||......
T Consensus 102 ~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~g~iv~isS~~~~~~--------- 172 (271)
T 3v2g_A 102 ETVEALGGLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDGGRIITIGSNLAELV--------- 172 (271)
T ss_dssp HHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECCGGGTCC---------
T ss_pred HHHHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEeChhhccC---------
Confidence 6999999999322 33456788999999999999998865 3469999998644310
Q ss_pred CCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCceeec
Q 047227 147 EALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDF 223 (485)
Q Consensus 147 e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~ 223 (485)
+..+...|+.+|...+.+.+.++.+ .|+++.+++||.+.++...... ..........+ ...+
T Consensus 173 -----~~~~~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~~~~-~~~~~~~~~~~---------~~r~ 237 (271)
T 3v2g_A 173 -----PWPGISLYSASKAALAGLTKGLARDLGPRGITVNIVHPGSTDTDMNPADG-DHAEAQRERIA---------TGSY 237 (271)
T ss_dssp -----CSTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSSSSCSSC-SSHHHHHHTCT---------TSSC
T ss_pred -----CCCCchHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEecCCCcCCcccccc-hhHHHHHhcCC---------CCCC
Confidence 1245678999999999998877654 4899999999999987543210 11111222211 1246
Q ss_pred ccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCC
Q 047227 224 TYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNME 261 (485)
Q Consensus 224 i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~ 261 (485)
..++|+|++++.++... ..-..|+.+++.++.
T Consensus 238 ~~pedvA~~v~fL~s~~------~~~itG~~i~vdGG~ 269 (271)
T 3v2g_A 238 GEPQDIAGLVAWLAGPQ------GKFVTGASLTIDGGA 269 (271)
T ss_dssp BCHHHHHHHHHHHHSGG------GTTCCSCEEEESTTT
T ss_pred CCHHHHHHHHHHHhCcc------cCCccCCEEEeCcCc
Confidence 77999999998886422 223679999998763
|
| >3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.81 E-value=2.8e-19 Score=172.40 Aligned_cols=226 Identities=15% Similarity=0.064 Sum_probs=159.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhh--cCCCeEEEEecCCCHHHHHHHhc-
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEAL--RSGRAHYVSFDLRHKAQVLQALQ- 82 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~Dl~d~~~l~~~~~- 82 (485)
+++++|||||+|.||+++++.|.++| ++|.+++|....... ....+ ...++.++.+|++|++++.++++
T Consensus 27 ~~k~~lVTGas~GIG~aia~~la~~G-~~V~~~~r~~~~~~~-------~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~ 98 (283)
T 3v8b_A 27 PSPVALITGAGSGIGRATALALAADG-VTVGALGRTRTEVEE-------VADEIVGAGGQAIALEADVSDELQMRNAVRD 98 (283)
T ss_dssp CCCEEEEESCSSHHHHHHHHHHHHTT-CEEEEEESSHHHHHH-------HHHHHTTTTCCEEEEECCTTCHHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHH-------HHHHHHhcCCcEEEEEccCCCHHHHHHHHHH
Confidence 46789999999999999999999999 699999887532111 11111 13578899999999998887775
Q ss_pred ------CCCEEEEcCCCCC--------CCCchhhhHHHHHHHHHHHHHHH----HhcCCCEEEEecCccccccCCCCcCC
Q 047227 83 ------GAEVVFHMAAPNS--------SINNHKLHHSVNVEGTKNVIDAC----AELKVKRLIYTSSPSVVFDGVHGIIN 144 (485)
Q Consensus 83 ------~~d~Vih~aa~~~--------~~~~~~~~~~~nv~~t~~ll~a~----~~~~v~r~V~~SS~~vy~~~~~~~~~ 144 (485)
++|++||+||... +.++++..+++|+.++.++.+++ ++.+..++|++||...+..
T Consensus 99 ~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~Iv~isS~~~~~~------- 171 (283)
T 3v8b_A 99 LVLKFGHLDIVVANAGINGVWAPIDDLKPFEWDETIAVNLRGTFLTLHLTVPYLKQRGGGAIVVVSSINGTRT------- 171 (283)
T ss_dssp HHHHHSCCCEEEECCCCCCCBCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCSBTTTB-------
T ss_pred HHHHhCCCCEEEECCCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCceEEEEcChhhccC-------
Confidence 6999999999421 22356678999999999999988 5566779999999766421
Q ss_pred CCCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCce-
Q 047227 145 GNEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNV- 220 (485)
Q Consensus 145 ~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~- 220 (485)
.+..+...|+.+|+..+.+.+.++.+ .|+++.+++||.+..+.......... .....+..........
T Consensus 172 ------~~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~--~~~~~~~~~~~~~~p~~ 243 (283)
T 3v8b_A 172 ------FTTPGATAYTATKAAQVAIVQQLALELGKHHIRVNAVCPGAIETNISDNTKLRHE--EETAIPVEWPKGQVPIT 243 (283)
T ss_dssp ------CCSTTCHHHHHHHHHHHHHHHHHHHHTTTTTEEEEEEEECSBSSCTTCCTTBCCH--HHHSCCCBCTTCSCGGG
T ss_pred ------CCCCCchHHHHHHHHHHHHHHHHHHHhCccCcEEEEEEeCCCcCCcccccccccc--hhhhhhhhhhhhcCccc
Confidence 01235678999999999999887654 58999999999998875432110000 0001111111111122
Q ss_pred -eecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCC
Q 047227 221 -YDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNM 260 (485)
Q Consensus 221 -~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~ 260 (485)
..+..++|+|++++.++... ..-..|+.+++.+|
T Consensus 244 ~~r~~~pedvA~~v~fL~s~~------a~~itG~~i~vdGG 278 (283)
T 3v8b_A 244 DGQPGRSEDVAELIRFLVSER------ARHVTGSPVWIDGG 278 (283)
T ss_dssp TTCCBCHHHHHHHHHHHTSGG------GTTCCSCEEEESTT
T ss_pred cCCCCCHHHHHHHHHHHcCcc------ccCCcCCEEEECcC
Confidence 35678999999999875421 12267899999876
|
| >2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=2.5e-19 Score=172.06 Aligned_cols=222 Identities=11% Similarity=0.050 Sum_probs=158.7
Q ss_pred CCCCCCCCEEEEEcCC--CchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhc-CCCeEEEEecCCCHHHH
Q 047227 1 MSGEENERLCVVTGGR--GFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALR-SGRAHYVSFDLRHKAQV 77 (485)
Q Consensus 1 M~~~~~~~~iLVtGgt--G~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~Dl~d~~~l 77 (485)
|+ ..++|++|||||+ |+||+++++.|.++| ++|.+++|... .... ...... .+++.++.+|++|++++
T Consensus 1 M~-~l~~k~vlVTGas~~~gIG~~~a~~l~~~G-~~V~~~~r~~~----~~~~---~~~l~~~~~~~~~~~~D~~~~~~v 71 (275)
T 2pd4_A 1 MG-FLKGKKGLIVGVANNKSIAYGIAQSCFNQG-ATLAFTYLNES----LEKR---VRPIAQELNSPYVYELDVSKEEHF 71 (275)
T ss_dssp -C-TTTTCEEEEECCCSTTSHHHHHHHHHHTTT-CEEEEEESSTT----THHH---HHHHHHHTTCCCEEECCTTCHHHH
T ss_pred CC-CCCCCEEEEECCCCCCcHHHHHHHHHHHCC-CEEEEEeCCHH----HHHH---HHHHHHhcCCcEEEEcCCCCHHHH
Confidence 44 3457899999999 999999999999999 68999988752 0111 111111 13478999999999988
Q ss_pred HHHhc-------CCCEEEEcCCCCC-----------CCCchhhhHHHHHHHHHHHHHHHHhcC--CCEEEEecCcccccc
Q 047227 78 LQALQ-------GAEVVFHMAAPNS-----------SINNHKLHHSVNVEGTKNVIDACAELK--VKRLIYTSSPSVVFD 137 (485)
Q Consensus 78 ~~~~~-------~~d~Vih~aa~~~-----------~~~~~~~~~~~nv~~t~~ll~a~~~~~--v~r~V~~SS~~vy~~ 137 (485)
.++++ +.|++||+||... +.++++..+++|+.++.++.+++...- -.++|++||...+.
T Consensus 72 ~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~- 150 (275)
T 2pd4_A 72 KSLYNSVKKDLGSLDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISVYSLIELTNTLKPLLNNGASVLTLSYLGSTK- 150 (275)
T ss_dssp HHHHHHHHHHTSCEEEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGTS-
T ss_pred HHHHHHHHHHcCCCCEEEECCccCccccCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEEecchhcC-
Confidence 87775 5899999999432 223567789999999999999998751 25899999976642
Q ss_pred CCCCcCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCC--hHHHHHHHHcCCCeE
Q 047227 138 GVHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLL--VPSLVAAARAGKSKF 212 (485)
Q Consensus 138 ~~~~~~~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~--~~~~~~~~~~g~~~~ 212 (485)
+..+...|+.+|...+.+.+.++.+ .|+++++++||.+.++..... .+.+........+
T Consensus 151 --------------~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p-- 214 (275)
T 2pd4_A 151 --------------YMAHYNVMGLAKAALESAVRYLAVDLGKHHIRVNALSAGPIRTLASSGIADFRMILKWNEINAP-- 214 (275)
T ss_dssp --------------BCTTCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCTTGGGSTTHHHHHHHHHHHST--
T ss_pred --------------CCCCchhhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCccccchhhhccccHHHHHHHHhcCC--
Confidence 1234568999999999998877644 589999999999998753321 2233332222211
Q ss_pred EecCCCceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCC
Q 047227 213 IIGDGNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNME 261 (485)
Q Consensus 213 ~~g~g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~ 261 (485)
...+.+++|+|++++.++.... ....|+.+++.++.
T Consensus 215 -------~~~~~~p~dva~~~~~l~s~~~------~~~tG~~~~vdgg~ 250 (275)
T 2pd4_A 215 -------LRKNVSLEEVGNAGMYLLSSLS------SGVSGEVHFVDAGY 250 (275)
T ss_dssp -------TSSCCCHHHHHHHHHHHHSGGG------TTCCSCEEEESTTG
T ss_pred -------cCCCCCHHHHHHHHHHHhCccc------cCCCCCEEEECCCc
Confidence 1235679999999998865211 22578889988764
|
| >3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=1.8e-18 Score=167.79 Aligned_cols=221 Identities=14% Similarity=0.074 Sum_probs=162.4
Q ss_pred CCCCEEEEEcCCC--chHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhh-hcCCCeEEEEecCCCHHHHHHHh
Q 047227 5 ENERLCVVTGGRG--FAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEA-LRSGRAHYVSFDLRHKAQVLQAL 81 (485)
Q Consensus 5 ~~~~~iLVtGgtG--~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~l~~~~ 81 (485)
.++|++|||||+| .||+++++.|.++| ++|.+++|..... +. .... ....++.++.+|++|++++.+++
T Consensus 28 l~~k~vlVTGasg~~GIG~~ia~~la~~G-~~V~~~~r~~~~~----~~---~~~~~~~~~~~~~~~~Dv~d~~~v~~~~ 99 (296)
T 3k31_A 28 MEGKKGVIIGVANDKSLAWGIAKAVCAQG-AEVALTYLSETFK----KR---VDPLAESLGVKLTVPCDVSDAESVDNMF 99 (296)
T ss_dssp TTTCEEEEECCCSTTSHHHHHHHHHHHTT-CEEEEEESSGGGH----HH---HHHHHHHHTCCEEEECCTTCHHHHHHHH
T ss_pred cCCCEEEEEeCCCCCCHHHHHHHHHHHCC-CEEEEEeCChHHH----HH---HHHHHHhcCCeEEEEcCCCCHHHHHHHH
Confidence 4568999999998 99999999999999 6899998874311 10 1111 11245789999999999888877
Q ss_pred c-------CCCEEEEcCCCCC-----------CCCchhhhHHHHHHHHHHHHHHHHhcC--CCEEEEecCccccccCCCC
Q 047227 82 Q-------GAEVVFHMAAPNS-----------SINNHKLHHSVNVEGTKNVIDACAELK--VKRLIYTSSPSVVFDGVHG 141 (485)
Q Consensus 82 ~-------~~d~Vih~aa~~~-----------~~~~~~~~~~~nv~~t~~ll~a~~~~~--v~r~V~~SS~~vy~~~~~~ 141 (485)
+ +.|++||+||... +.+++...+++|+.++.++.+++...- ..++|++||...+.
T Consensus 100 ~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~IV~isS~~~~~----- 174 (296)
T 3k31_A 100 KVLAEEWGSLDFVVHAVAFSDKNELKGRYVDTSLGNFLTSMHISCYSFTYIASKAEPLMTNGGSILTLSYYGAEK----- 174 (296)
T ss_dssp HHHHHHHSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEECGGGTS-----
T ss_pred HHHHHHcCCCCEEEECCCcCCcccccCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEEEehhhcc-----
Confidence 5 5899999999432 234667899999999999999998753 34899999987652
Q ss_pred cCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCCh--HHHHHHHHcCCCeEEecC
Q 047227 142 IINGNEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLLV--PSLVAAARAGKSKFIIGD 216 (485)
Q Consensus 142 ~~~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~~--~~~~~~~~~g~~~~~~g~ 216 (485)
+......|+.||+..+.+.+.++.+ .|+++.+++||.+..+...... ...........+
T Consensus 175 ----------~~~~~~~Y~asKaal~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p------ 238 (296)
T 3k31_A 175 ----------VVPHYNVMGVCKAALEASVKYLAVDLGKQQIRVNAISAGPVRTLASSGISDFHYILTWNKYNSP------ 238 (296)
T ss_dssp ----------CCTTTTHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECCCCCSSCCSCHHHHHHHHHHHHHST------
T ss_pred ----------CCCCchhhHHHHHHHHHHHHHHHHHHhhcCcEEEEEEECCCcCchhhcccchHHHHHHHHhcCC------
Confidence 1245678999999999998877643 5899999999999988654332 222222222222
Q ss_pred CCceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCCCc
Q 047227 217 GNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMESI 263 (485)
Q Consensus 217 g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~~ 263 (485)
...+..++|+|++++.++.... .-..|+.+++.++..+
T Consensus 239 ---~~r~~~pedvA~~v~fL~s~~a------~~itG~~i~vdGG~~~ 276 (296)
T 3k31_A 239 ---LRRNTTLDDVGGAALYLLSDLG------RGTTGETVHVDCGYHV 276 (296)
T ss_dssp ---TSSCCCHHHHHHHHHHHHSGGG------TTCCSCEEEESTTGGG
T ss_pred ---CCCCCCHHHHHHHHHHHcCCcc------CCccCCEEEECCCccc
Confidence 2346678999999998865322 2367999999887543
|
| >3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=99.81 E-value=2.3e-19 Score=172.26 Aligned_cols=221 Identities=15% Similarity=0.081 Sum_probs=159.9
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhh-hcCCCeEEEEecCCCHHHHHHHhc-
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEA-LRSGRAHYVSFDLRHKAQVLQALQ- 82 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~l~~~~~- 82 (485)
.++|++|||||+|+||+++++.|.++| ++|.+++|....... ..... ....++.++.+|++|++++.++++
T Consensus 30 l~gk~~lVTGas~GIG~aia~~la~~G-~~V~~~~r~~~~~~~------~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~ 102 (276)
T 3r1i_A 30 LSGKRALITGASTGIGKKVALAYAEAG-AQVAVAARHSDALQV------VADEIAGVGGKALPIRCDVTQPDQVRGMLDQ 102 (276)
T ss_dssp CTTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESSGGGGHH------HHHHHHHTTCCCEEEECCTTCHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHH------HHHHHHhcCCeEEEEEcCCCCHHHHHHHHHH
Confidence 457899999999999999999999999 699999986432111 11111 123578899999999999888876
Q ss_pred ------CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHHHhc----C-CCEEEEecCccccccCCCCcCC
Q 047227 83 ------GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDACAEL----K-VKRLIYTSSPSVVFDGVHGIIN 144 (485)
Q Consensus 83 ------~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~~~~----~-v~r~V~~SS~~vy~~~~~~~~~ 144 (485)
+.|++||+||... ..++++..+++|+.++.++.+++... + ..++|++||.+.+...
T Consensus 103 ~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~~g~iv~isS~~~~~~~------ 176 (276)
T 3r1i_A 103 MTGELGGIDIAVCNAGIVSVQAMLDMPLEEFQRIQDTNVTGVFLTAQAAARAMVDQGLGGTIITTASMSGHIIN------ 176 (276)
T ss_dssp HHHHHSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCC------
T ss_pred HHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECchHhcccC------
Confidence 6999999999332 23356677899999999998887643 3 2689999997765211
Q ss_pred CCCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCcee
Q 047227 145 GNEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVY 221 (485)
Q Consensus 145 ~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~~ 221 (485)
+..+...|+.||...+.+.+.++.+ .++++.+++||.+..+..... +.......... ...
T Consensus 177 -------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~~~-~~~~~~~~~~~---------p~~ 239 (276)
T 3r1i_A 177 -------IPQQVSHYCTSKAAVVHLTKAMAVELAPHQIRVNSVSPGYIRTELVEPL-ADYHALWEPKI---------PLG 239 (276)
T ss_dssp -------CSSCCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSTTTGGG-GGGHHHHGGGS---------TTS
T ss_pred -------CCCCcchHHHHHHHHHHHHHHHHHHHhhcCcEEEEEeeCCCcCCccccc-hHHHHHHHhcC---------CCC
Confidence 1134578999999999999887754 689999999999988754322 11222222221 223
Q ss_pred ecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCC
Q 047227 222 DFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNME 261 (485)
Q Consensus 222 ~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~ 261 (485)
.+..++|+|++++.++.... .-..|+.+++.++.
T Consensus 240 r~~~pedvA~~v~fL~s~~~------~~itG~~i~vdGG~ 273 (276)
T 3r1i_A 240 RMGRPEELTGLYLYLASAAS------SYMTGSDIVIDGGY 273 (276)
T ss_dssp SCBCGGGSHHHHHHHHSGGG------TTCCSCEEEESTTT
T ss_pred CCcCHHHHHHHHHHHcCccc------cCccCcEEEECcCc
Confidence 47789999999998865322 22679999998764
|
| >1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.81 E-value=9.9e-19 Score=166.96 Aligned_cols=205 Identities=15% Similarity=0.066 Sum_probs=151.7
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCC--ceEEEeecCCccccCCccchhhhhhh-hcCCCeEEEEecCCCHHHHHHHh
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDM--FSVRIADLSDSIALEPHEEQGILGEA-LRSGRAHYVSFDLRHKAQVLQAL 81 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~--~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~l~~~~ 81 (485)
.++|++|||||+|+||+++++.|+++|. ++|++++|...... . +... ....++.++.+|++|.+++.+++
T Consensus 19 ~~~k~vlITGasggIG~~la~~L~~~G~~~~~V~~~~r~~~~~~----~---~~~l~~~~~~~~~~~~Dl~~~~~v~~~~ 91 (267)
T 1sny_A 19 SHMNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAK----E---LEDLAKNHSNIHILEIDLRNFDAYDKLV 91 (267)
T ss_dssp -CCSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCH----H---HHHHHHHCTTEEEEECCTTCGGGHHHHH
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHhcCCCCcEEEEEecChhhhH----H---HHHhhccCCceEEEEecCCChHHHHHHH
Confidence 4578999999999999999999999993 48999988754211 1 1111 11457999999999998888777
Q ss_pred c---------CCCEEEEcCCCCC--------CCCchhhhHHHHHHHHHHHHHHHHhc----------C-----CCEEEEe
Q 047227 82 Q---------GAEVVFHMAAPNS--------SINNHKLHHSVNVEGTKNVIDACAEL----------K-----VKRLIYT 129 (485)
Q Consensus 82 ~---------~~d~Vih~aa~~~--------~~~~~~~~~~~nv~~t~~ll~a~~~~----------~-----v~r~V~~ 129 (485)
+ ++|+|||+||... ..+++...+++|+.++.++++++... + ..++|++
T Consensus 92 ~~~~~~~g~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iv~i 171 (267)
T 1sny_A 92 ADIEGVTKDQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVPIMLAKACLPLLKKAAKANESQPMGVGRAAIINM 171 (267)
T ss_dssp HHHHHHHGGGCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTSCSSTTTCEEEEE
T ss_pred HHHHHhcCCCCccEEEECCCcCCCccccccCCHHHHHHHHhhhchHHHHHHHHHHHHHhhcccccccccccCCCceEEEE
Confidence 6 7999999999433 22355678999999999999988654 2 4689999
Q ss_pred cCccccccCCCCcCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCChHHHHHHHH
Q 047227 130 SSPSVVFDGVHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLLVPSLVAAAR 206 (485)
Q Consensus 130 SS~~vy~~~~~~~~~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~ 206 (485)
||...+.... +..+...|+.+|...|.+.+.++.+ .+++++++|||.+..+....
T Consensus 172 sS~~~~~~~~------------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~---------- 229 (267)
T 1sny_A 172 SSILGSIQGN------------TDGGMYAYRTSKSALNAATKSLSVDLYPQRIMCVSLHPGWVKTDMGGS---------- 229 (267)
T ss_dssp CCGGGCSTTC------------CSCCCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEECCCSBCSTTTCT----------
T ss_pred ecccccccCC------------CCCCchHHHHHHHHHHHHHHHHHHHhhcCCcEEEEeCCcceecCCCCC----------
Confidence 9988764211 1235678999999999999887654 68999999999997663211
Q ss_pred cCCCeEEecCCCceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEee
Q 047227 207 AGKSKFIIGDGNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVT 258 (485)
Q Consensus 207 ~g~~~~~~g~g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~ 258 (485)
..++.++|+|+.++.++...... ..|..+++.
T Consensus 230 --------------~~~~~~~~~a~~~~~~~~~~~~~------~~G~~~~~~ 261 (267)
T 1sny_A 230 --------------SAPLDVPTSTGQIVQTISKLGEK------QNGGFVNYD 261 (267)
T ss_dssp --------------TCSBCHHHHHHHHHHHHHHCCGG------GTTCEECTT
T ss_pred --------------CCCCCHHHHHHHHHHHHHhcCcC------CCCcEEccC
Confidence 12467899999999987743222 556655443
|
| >1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=4.1e-19 Score=171.29 Aligned_cols=223 Identities=13% Similarity=0.073 Sum_probs=157.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhh-cCCCeEEEEecCCCHHHHHHHhc--
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEAL-RSGRAHYVSFDLRHKAQVLQALQ-- 82 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~-- 82 (485)
++|++|||||+|+||+++++.|+++| ++|.+++|....... . ...... ...++.++.+|++|.+++.++++
T Consensus 28 ~~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~---~--~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 101 (283)
T 1g0o_A 28 EGKVALVTGAGRGIGREMAMELGRRG-CKVIVNYANSTESAE---E--VVAAIKKNGSDAACVKANVGVVEDIVRMFEEA 101 (283)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESSCHHHHH---H--HHHHHHHTTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCCchHHHH---H--HHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHH
Confidence 46899999999999999999999999 689998876431100 0 011111 13578899999999988877664
Q ss_pred -----CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHHHhc--CCCEEEEecCccccccCCCCcCCCCCC
Q 047227 83 -----GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDACAEL--KVKRLIYTSSPSVVFDGVHGIINGNEA 148 (485)
Q Consensus 83 -----~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~~~~--~v~r~V~~SS~~vy~~~~~~~~~~~e~ 148 (485)
++|+|||+||... ..++++..+++|+.++.++++++... +.+++|++||...+...
T Consensus 102 ~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~---------- 171 (283)
T 1g0o_A 102 VKIFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMGSITGQAKA---------- 171 (283)
T ss_dssp HHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEECCGGGTCSS----------
T ss_pred HHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEEechhhccCC----------
Confidence 5899999999432 23456778999999999999999886 56799999997664210
Q ss_pred CCCCCCCCchHHHHHHHHHHHHHHHhC---CCCceEEEEecCCcccCCCCCC-----------hHHHHHHHHcCCCeEEe
Q 047227 149 LPYPPKHNDFYSATKAEGEALVIKANG---TNGLLTCCIRPSSIFGPGDRLL-----------VPSLVAAARAGKSKFII 214 (485)
Q Consensus 149 ~~~~~~~~~~Y~~sK~~~E~~~~~~~~---~~g~~~~ilRp~~v~Gp~~~~~-----------~~~~~~~~~~g~~~~~~ 214 (485)
..+...|+.+|...|.+.+.++. ..|+++.+++||.+.++..... -+..........
T Consensus 172 ----~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 242 (283)
T 1g0o_A 172 ----VPKHAVYSGSKGAIETFARCMAIDMADKKITVNVVAPGGIKTDMYHAVCREYIPNGENLSNEEVDEYAAVQ----- 242 (283)
T ss_dssp ----CSSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBSSHHHHHHGGGGSTTCTTCCHHHHHHHHHHH-----
T ss_pred ----CCCCcchHHHHHHHHHHHHHHHHHhcccCeEEEEEecCcccchhhhhhhhhccccccccCHHHHHHHHhhc-----
Confidence 11367899999999999887764 3589999999999987621100 011111111100
Q ss_pred cCCCceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCC
Q 047227 215 GDGNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNME 261 (485)
Q Consensus 215 g~g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~ 261 (485)
......+.+++|+|++++.++.... ....|+.+++.++.
T Consensus 243 --~~p~~r~~~p~dvA~~v~~l~s~~~------~~itG~~i~vdgG~ 281 (283)
T 1g0o_A 243 --WSPLRRVGLPIDIARVVCFLASNDG------GWVTGKVIGIDGGA 281 (283)
T ss_dssp --SCTTCSCBCHHHHHHHHHHHHSGGG------TTCCSCEEEESTTC
T ss_pred --CCCCCCCcCHHHHHHHHHHHhCccc------cCcCCCEEEeCCCc
Confidence 1122347889999999998865221 22678899988763
|
| >3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A | Back alignment and structure |
|---|
Probab=99.81 E-value=5.5e-19 Score=167.40 Aligned_cols=219 Identities=17% Similarity=0.136 Sum_probs=155.0
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecC--CCHHHHHHHhc
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDL--RHKAQVLQALQ 82 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl--~d~~~l~~~~~ 82 (485)
.++|++|||||+|.||+++++.|.++| ++|.+++|..........+ +.. ....++.++.+|+ +|.+++.++++
T Consensus 10 l~~k~vlVTGas~gIG~aia~~l~~~G-~~V~~~~r~~~~~~~~~~~---~~~-~~~~~~~~~~~D~~~~~~~~~~~~~~ 84 (252)
T 3f1l_A 10 LNDRIILVTGASDGIGREAAMTYARYG-ATVILLGRNEEKLRQVASH---INE-ETGRQPQWFILDLLTCTSENCQQLAQ 84 (252)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHH---HHH-HHSCCCEEEECCTTTCCHHHHHHHHH
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHH---HHh-hcCCCceEEEEecccCCHHHHHHHHH
Confidence 457899999999999999999999999 6899998875421110000 111 1134788999999 89888877765
Q ss_pred -------CCCEEEEcCCCCC--------CCCchhhhHHHHHHHHHHHHHHH----HhcCCCEEEEecCccccccCCCCcC
Q 047227 83 -------GAEVVFHMAAPNS--------SINNHKLHHSVNVEGTKNVIDAC----AELKVKRLIYTSSPSVVFDGVHGII 143 (485)
Q Consensus 83 -------~~d~Vih~aa~~~--------~~~~~~~~~~~nv~~t~~ll~a~----~~~~v~r~V~~SS~~vy~~~~~~~~ 143 (485)
+.|++||+||... ..++++..+++|+.++.++.+++ ++.+..++|++||...+.
T Consensus 85 ~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~------- 157 (252)
T 3f1l_A 85 RIAVNYPRLDGVLHNAGLLGDVCPMSEQNPQVWQDVMQVNVNATFMLTQALLPLLLKSDAGSLVFTSSSVGRQ------- 157 (252)
T ss_dssp HHHHHCSCCSEEEECCCCCCCCSCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGTS-------
T ss_pred HHHHhCCCCCEEEECCccCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHCCCCEEEEECChhhcc-------
Confidence 5899999999421 22345678999999999999988 455677999999977652
Q ss_pred CCCCCCCCCCCCCchHHHHHHHHHHHHHHHhCCCC--ceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCcee
Q 047227 144 NGNEALPYPPKHNDFYSATKAEGEALVIKANGTNG--LLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVY 221 (485)
Q Consensus 144 ~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~g--~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~~ 221 (485)
+..+...|+.+|...+.+.+.++.+++ +++.++.||.+..+ +....... ....
T Consensus 158 --------~~~~~~~Y~asK~a~~~l~~~la~e~~~~irvn~v~PG~v~t~--------~~~~~~~~---------~~~~ 212 (252)
T 3f1l_A 158 --------GRANWGAYAASKFATEGMMQVLADEYQQRLRVNCINPGGTRTA--------MRASAFPT---------EDPQ 212 (252)
T ss_dssp --------CCTTCHHHHHHHHHHHHHHHHHHHHTTTTCEEEEEECCSBSSH--------HHHHHCTT---------CCGG
T ss_pred --------CCCCCchhHHHHHHHHHHHHHHHHHhcCCcEEEEEecCcccCc--------hhhhhCCc---------cchh
Confidence 124567899999999999888775543 89999999998654 11111111 1223
Q ss_pred ecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCCCccHH
Q 047227 222 DFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMESIKFW 266 (485)
Q Consensus 222 ~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~~t~~ 266 (485)
.+..++|+|.+++.++.... .-..|+.+++.++...++.
T Consensus 213 ~~~~p~dva~~~~~L~s~~~------~~itG~~i~vdgG~~~~~~ 251 (252)
T 3f1l_A 213 KLKTPADIMPLYLWLMGDDS------RRKTGMTFDAQPGRKPGIS 251 (252)
T ss_dssp GSBCTGGGHHHHHHHHSGGG------TTCCSCEEESSCC------
T ss_pred ccCCHHHHHHHHHHHcCccc------cCCCCCEEEeCCCcCCCCC
Confidence 47789999999998865322 2267999999988766544
|
| >3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=6.5e-19 Score=169.57 Aligned_cols=219 Identities=10% Similarity=0.056 Sum_probs=160.9
Q ss_pred CCCCEEEEEcCCCc--hHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhh-hcCCCeEEEEecCCCHHHHHHHh
Q 047227 5 ENERLCVVTGGRGF--AARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEA-LRSGRAHYVSFDLRHKAQVLQAL 81 (485)
Q Consensus 5 ~~~~~iLVtGgtG~--iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~l~~~~ 81 (485)
.++|++|||||+|+ ||+++++.|+++| ++|.+++|... .+. +... ....++.++.+|++|.+++.+++
T Consensus 24 l~~k~vlVTGasg~~GIG~~ia~~l~~~G-~~V~~~~r~~~-----~~~---~~~l~~~~~~~~~~~~Dl~~~~~v~~~~ 94 (280)
T 3nrc_A 24 LAGKKILITGLLSNKSIAYGIAKAMHREG-AELAFTYVGQF-----KDR---VEKLCAEFNPAAVLPCDVISDQEIKDLF 94 (280)
T ss_dssp TTTCEEEECCCCSTTCHHHHHHHHHHHTT-CEEEEEECTTC-----HHH---HHHHHGGGCCSEEEECCTTCHHHHHHHH
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHcC-CEEEEeeCchH-----HHH---HHHHHHhcCCceEEEeecCCHHHHHHHH
Confidence 45689999999988 9999999999999 68999988751 011 1111 12246899999999999888877
Q ss_pred c-------CCCEEEEcCCCC------------CCCCchhhhHHHHHHHHHHHHHHHHhc---CCCEEEEecCccccccCC
Q 047227 82 Q-------GAEVVFHMAAPN------------SSINNHKLHHSVNVEGTKNVIDACAEL---KVKRLIYTSSPSVVFDGV 139 (485)
Q Consensus 82 ~-------~~d~Vih~aa~~------------~~~~~~~~~~~~nv~~t~~ll~a~~~~---~v~r~V~~SS~~vy~~~~ 139 (485)
+ +.|+|||+||.. ...+++...+++|+.++.++.+++... ...++|++||...+.
T Consensus 95 ~~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~g~iv~isS~~~~~--- 171 (280)
T 3nrc_A 95 VELGKVWDGLDAIVHSIAFAPRDQLEGNFIDCVTREGFSIAHDISAYSFAALAKEGRSMMKNRNASMVALTYIGAEK--- 171 (280)
T ss_dssp HHHHHHCSSCCEEEECCCCCCGGGSSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTTCEEEEEECGGGTS---
T ss_pred HHHHHHcCCCCEEEECCccCCCcccCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecccccc---
Confidence 4 479999999943 233456678999999999999998764 246999999987753
Q ss_pred CCcCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCC--hHHHHHHHHcCCCeEEe
Q 047227 140 HGIINGNEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLL--VPSLVAAARAGKSKFII 214 (485)
Q Consensus 140 ~~~~~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~--~~~~~~~~~~g~~~~~~ 214 (485)
+..+...|+.+|+..+.+.+.++.+ .|+++.+++||.+..+..... ............+
T Consensus 172 ------------~~~~~~~Y~asKaal~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p---- 235 (280)
T 3nrc_A 172 ------------AMPSYNTMGVAKASLEATVRYTALALGEDGIKVNAVSAGPIKTLAASGISNFKKMLDYNAMVSP---- 235 (280)
T ss_dssp ------------CCTTTHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCCCCSGGGGCTTHHHHHHHHHHHST----
T ss_pred ------------CCCCchhhHHHHHHHHHHHHHHHHHHHHcCcEEEEEeeccccchhhhcCcchHHHHHHHHhcCC----
Confidence 2345678999999999998876643 689999999999998754321 2333333333222
Q ss_pred cCCCceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCCC
Q 047227 215 GDGNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMES 262 (485)
Q Consensus 215 g~g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~ 262 (485)
...+..++|+|++++.++... .....|+.+++.++..
T Consensus 236 -----~~~~~~pedvA~~v~~l~s~~------~~~~tG~~i~vdgG~~ 272 (280)
T 3nrc_A 236 -----LKKNVDIMEVGNTVAFLCSDM------ATGITGEVVHVDAGYH 272 (280)
T ss_dssp -----TCSCCCHHHHHHHHHHTTSGG------GTTCCSCEEEESTTGG
T ss_pred -----CCCCCCHHHHHHHHHHHhCcc------cCCcCCcEEEECCCcc
Confidence 234677999999999876521 1226799999988753
|
| >3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=1.1e-18 Score=169.17 Aligned_cols=221 Identities=10% Similarity=0.003 Sum_probs=159.4
Q ss_pred CCCCEEEEEcCCCc--hHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhh-hcCCCeEEEEecCCCHHHHHHHh
Q 047227 5 ENERLCVVTGGRGF--AARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEA-LRSGRAHYVSFDLRHKAQVLQAL 81 (485)
Q Consensus 5 ~~~~~iLVtGgtG~--iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~l~~~~ 81 (485)
.++|++|||||+|+ ||+++++.|.++| ++|.+.+|..... +. .... ....++.++.+|++|.+++.+++
T Consensus 29 l~gk~~lVTGasg~~GIG~aia~~la~~G-~~V~~~~r~~~~~----~~---~~~~~~~~~~~~~~~~Dv~d~~~v~~~~ 100 (293)
T 3grk_A 29 LQGKRGLILGVANNRSIAWGIAKAAREAG-AELAFTYQGDALK----KR---VEPLAEELGAFVAGHCDVADAASIDAVF 100 (293)
T ss_dssp TTTCEEEEECCCSSSSHHHHHHHHHHHTT-CEEEEEECSHHHH----HH---HHHHHHHHTCEEEEECCTTCHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCcHHHHHHHHHHHCC-CEEEEEcCCHHHH----HH---HHHHHHhcCCceEEECCCCCHHHHHHHH
Confidence 45789999999999 9999999999999 6899988863210 00 1111 11246889999999999888877
Q ss_pred c-------CCCEEEEcCCCCC-----------CCCchhhhHHHHHHHHHHHHHHHHhcC--CCEEEEecCccccccCCCC
Q 047227 82 Q-------GAEVVFHMAAPNS-----------SINNHKLHHSVNVEGTKNVIDACAELK--VKRLIYTSSPSVVFDGVHG 141 (485)
Q Consensus 82 ~-------~~d~Vih~aa~~~-----------~~~~~~~~~~~nv~~t~~ll~a~~~~~--v~r~V~~SS~~vy~~~~~~ 141 (485)
+ +.|++||+||... ..+++...+++|+.++.++.+++...- ..++|++||...+.
T Consensus 101 ~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~Iv~isS~~~~~----- 175 (293)
T 3grk_A 101 ETLEKKWGKLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMADGGSILTLTYYGAEK----- 175 (293)
T ss_dssp HHHHHHTSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCEEEEEEECGGGTS-----
T ss_pred HHHHHhcCCCCEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEEeehhhcc-----
Confidence 5 5899999999432 234567789999999999999987643 35899999987763
Q ss_pred cCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCC--ChHHHHHHHHcCCCeEEecC
Q 047227 142 IINGNEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRL--LVPSLVAAARAGKSKFIIGD 216 (485)
Q Consensus 142 ~~~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~--~~~~~~~~~~~g~~~~~~g~ 216 (485)
+......|+.||+..+.+.+.++.+ +|+++.+++||.+..+.... .............+
T Consensus 176 ----------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p------ 239 (293)
T 3grk_A 176 ----------VMPNYNVMGVAKAALEASVKYLAVDLGPQNIRVNAISAGPIKTLAASGIGDFRYILKWNEYNAP------ 239 (293)
T ss_dssp ----------BCTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCC------CCHHHHHHHHHHHST------
T ss_pred ----------CCCchHHHHHHHHHHHHHHHHHHHHHhHhCCEEEEEecCCCcchhhhcccchHHHHHHHHhcCC------
Confidence 1234578999999999998887644 58999999999999875332 12223333332222
Q ss_pred CCceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCCCc
Q 047227 217 GNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMESI 263 (485)
Q Consensus 217 g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~~ 263 (485)
...+..++|+|++++.++.... .-..|+.+++.++..+
T Consensus 240 ---~~r~~~pedvA~~v~~L~s~~~------~~itG~~i~vdGG~~~ 277 (293)
T 3grk_A 240 ---LRRTVTIDEVGDVGLYFLSDLS------RSVTGEVHHADSGYHV 277 (293)
T ss_dssp ---TSSCCCHHHHHHHHHHHHSGGG------TTCCSCEEEESTTGGG
T ss_pred ---CCCCCCHHHHHHHHHHHcCccc------cCCcceEEEECCCccc
Confidence 2346779999999998865322 2267999999887543
|
| >1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.81 E-value=1.1e-19 Score=174.27 Aligned_cols=193 Identities=10% Similarity=0.039 Sum_probs=144.1
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhh-cCCCeEEEEecCCCHHHHHHHhc-
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEAL-RSGRAHYVSFDLRHKAQVLQALQ- 82 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~- 82 (485)
.+++++|||||+|+||+++++.|+++| ++|++++|....... ...... ...++.++.+|++|.+++.++++
T Consensus 29 l~~k~vlITGasggIG~~la~~L~~~G-~~V~~~~r~~~~~~~------~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~ 101 (272)
T 1yb1_A 29 VTGEIVLITGAGHGIGRLTAYEFAKLK-SKLVLWDINKHGLEE------TAAKCKGLGAKVHTFVVDCSNREDIYSSAKK 101 (272)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHH------HHHHHHHTTCCEEEEECCTTCHHHHHHHHHH
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEEcCHHHHHH------HHHHHHhcCCeEEEEEeeCCCHHHHHHHHHH
Confidence 456899999999999999999999999 689999886432110 011111 13578999999999998887775
Q ss_pred ------CCCEEEEcCCCCCC-------CCchhhhHHHHHHHHHHHHHHHH----hcCCCEEEEecCccccccCCCCcCCC
Q 047227 83 ------GAEVVFHMAAPNSS-------INNHKLHHSVNVEGTKNVIDACA----ELKVKRLIYTSSPSVVFDGVHGIING 145 (485)
Q Consensus 83 ------~~d~Vih~aa~~~~-------~~~~~~~~~~nv~~t~~ll~a~~----~~~v~r~V~~SS~~vy~~~~~~~~~~ 145 (485)
++|+|||+||.... .+++...+++|+.++.++.+++. +.+.+++|++||...+..
T Consensus 102 ~~~~~g~iD~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~-------- 173 (272)
T 1yb1_A 102 VKAEIGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKNNHGHIVTVASAAGHVS-------- 173 (272)
T ss_dssp HHHHTCCCSEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCC-CCC--------
T ss_pred HHHHCCCCcEEEECCCcCCCcchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEechhhcCC--------
Confidence 68999999994321 22456789999999887766654 456789999999877631
Q ss_pred CCCCCCCCCCCchHHHHHHHHHHHHHHHhCC------CCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCc
Q 047227 146 NEALPYPPKHNDFYSATKAEGEALVIKANGT------NGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNN 219 (485)
Q Consensus 146 ~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~------~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~ 219 (485)
..+...|+.+|...|.+.+.++.+ .|++++++||+.+.++..... ...
T Consensus 174 -------~~~~~~Y~~sK~a~~~l~~~la~e~~~~~~~gi~v~~v~Pg~v~t~~~~~~-------------------~~~ 227 (272)
T 1yb1_A 174 -------VPFLLAYCSSKFAAVGFHKTLTDELAALQITGVKTTCLCPNFVNTGFIKNP-------------------STS 227 (272)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEEEETHHHHCSTTCT-------------------HHH
T ss_pred -------CCCchhHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCccccc-------------------ccc
Confidence 234568999999999999877653 489999999999988752210 011
Q ss_pred eeecccHHHHHHHHHHHHH
Q 047227 220 VYDFTYVANVAHAHICAER 238 (485)
Q Consensus 220 ~~~~i~v~D~a~a~~~~~~ 238 (485)
...+++++|+|++++.++.
T Consensus 228 ~~~~~~~~dva~~i~~~~~ 246 (272)
T 1yb1_A 228 LGPTLEPEEVVNRLMHGIL 246 (272)
T ss_dssp HCCCCCHHHHHHHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHHHH
Confidence 2357899999999998876
|
| >3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.1e-19 Score=178.33 Aligned_cols=216 Identities=16% Similarity=0.076 Sum_probs=139.6
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc-
Q 047227 4 EENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ- 82 (485)
Q Consensus 4 ~~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~- 82 (485)
..++++||||||+|+||+++++.|+++| ++|++++|+.......... +.......++.++.+|++|++++.++++
T Consensus 5 ~l~~k~vlVTGas~gIG~~la~~l~~~G-~~Vv~~~r~~~~~~~~~~~---l~~~~~~~~~~~~~~Dl~~~~~v~~~~~~ 80 (319)
T 3ioy_A 5 DFAGRTAFVTGGANGVGIGLVRQLLNQG-CKVAIADIRQDSIDKALAT---LEAEGSGPEVMGVQLDVASREGFKMAADE 80 (319)
T ss_dssp CCTTCEEEEETTTSTHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHH---HHHHTCGGGEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCCEEEEcCCchHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHH---HHhcCCCCeEEEEECCCCCHHHHHHHHHH
Confidence 3457899999999999999999999999 6999999875421110000 1111112378999999999998888775
Q ss_pred ------CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHHHhc----------CCCEEEEecCccccccCC
Q 047227 83 ------GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDACAEL----------KVKRLIYTSSPSVVFDGV 139 (485)
Q Consensus 83 ------~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~~~~----------~v~r~V~~SS~~vy~~~~ 139 (485)
++|+|||+||... +.++++..+++|+.|+.++++++... +..++|++||...+..
T Consensus 81 ~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~iV~isS~a~~~~-- 158 (319)
T 3ioy_A 81 VEARFGPVSILCNNAGVNLFQPIEESSYDDWDWLLGVNLHGVVNGVTTFVPRMVERVKAGEQKGGHVVNTASMAAFLA-- 158 (319)
T ss_dssp HHHHTCCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTSCCCCEEEEECCGGGTCC--
T ss_pred HHHhCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccCCCCcEEEEecccccccC--
Confidence 4799999999321 23456778999999999999887654 2458999999877631
Q ss_pred CCcCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhC---CCCceEEEEecCCcccCCCCC--ChHHHHHHHHcCCCeEEe
Q 047227 140 HGIINGNEALPYPPKHNDFYSATKAEGEALVIKANG---TNGLLTCCIRPSSIFGPGDRL--LVPSLVAAARAGKSKFII 214 (485)
Q Consensus 140 ~~~~~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~---~~g~~~~ilRp~~v~Gp~~~~--~~~~~~~~~~~g~~~~~~ 214 (485)
......|+.||...+.+.+.++. ..|+++++++||.|.++.... ..+..+............
T Consensus 159 -------------~~~~~~Y~aSKaal~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (319)
T 3ioy_A 159 -------------AGSPGIYNTTKFAVRGLSESLHYSLLKYEIGVSVLCPGLVKSYIYASDDIRPDALKGEVKPVDKTAV 225 (319)
T ss_dssp -------------CSSSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEECCCCBC--------------------------
T ss_pred -------------CCCCHHHHHHHHHHHHHHHHHHHHhhhcCCEEEEEEcCeEccCcccccccCchhhcccccchhHHHH
Confidence 23456899999955555544432 358999999999998764321 111111000000000000
Q ss_pred cCCC-ceeecccHHHHHHHHHHHHH
Q 047227 215 GDGN-NVYDFTYVANVAHAHICAER 238 (485)
Q Consensus 215 g~g~-~~~~~i~v~D~a~a~~~~~~ 238 (485)
.+.. .....++++|+|++++.+++
T Consensus 226 ~~~~~~~~~~~~pe~vA~~~~~al~ 250 (319)
T 3ioy_A 226 ERLAGVHEFGMEPDVIGARVIEAMK 250 (319)
T ss_dssp ---CCGGGSSBCHHHHHHHHHHHHH
T ss_pred HHHHHhhhcCCCHHHHHHHHHHHHH
Confidence 0111 11122799999999999977
|
| >1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=1.9e-19 Score=172.42 Aligned_cols=202 Identities=14% Similarity=0.041 Sum_probs=146.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHh-cCCceEEEeecCCccccCCccchhhhhhhh-cCCCeEEEEecCCCHHHHHHHhc-
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIR-YDMFSVRIADLSDSIALEPHEEQGILGEAL-RSGRAHYVSFDLRHKAQVLQALQ- 82 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~-~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~- 82 (485)
++++||||||+|+||+++++.|++ +| ++|++++|....... ...... ...++.++.+|++|.+++.++++
T Consensus 3 ~~k~vlITGasggIG~~~a~~L~~~~g-~~V~~~~r~~~~~~~------~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~ 75 (276)
T 1wma_A 3 GIHVALVTGGNKGIGLAIVRDLCRLFS-GDVVLTARDVTRGQA------AVQQLQAEGLSPRFHQLDIDDLQSIRALRDF 75 (276)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHHSS-SEEEEEESSHHHHHH------HHHHHHHTTCCCEEEECCTTCHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHhcC-CeEEEEeCChHHHHH------HHHHHHhcCCeeEEEECCCCCHHHHHHHHHH
Confidence 468999999999999999999999 89 599999886432110 011111 13578999999999998888876
Q ss_pred ------CCCEEEEcCCCCCC-------CCchhhhHHHHHHHHHHHHHHHHhcC--CCEEEEecCccccccCCC--C----
Q 047227 83 ------GAEVVFHMAAPNSS-------INNHKLHHSVNVEGTKNVIDACAELK--VKRLIYTSSPSVVFDGVH--G---- 141 (485)
Q Consensus 83 ------~~d~Vih~aa~~~~-------~~~~~~~~~~nv~~t~~ll~a~~~~~--v~r~V~~SS~~vy~~~~~--~---- 141 (485)
++|+|||+||.... ..+++..+++|+.++.++++++...- .+++|++||...++.... +
T Consensus 76 ~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~~sS~~~~~~~~~~~~~~~~ 155 (276)
T 1wma_A 76 LRKEYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSSIMSVRALKSCSPELQQ 155 (276)
T ss_dssp HHHHHSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCHHHHHHHHTSCHHHHH
T ss_pred HHHhcCCCCEEEECCcccccCCCccccHHHHHhhhheeeeeHHHHHHHHHHhhCCCCEEEEECChhhhcccccCChhHHh
Confidence 79999999993321 24556789999999999999998763 249999999877742000 0
Q ss_pred ---cCCCCC-----------------CCCCCCCCCchHHHHHHHHHHHHHHHhCC-------CCceEEEEecCCcccCCC
Q 047227 142 ---IINGNE-----------------ALPYPPKHNDFYSATKAEGEALVIKANGT-------NGLLTCCIRPSSIFGPGD 194 (485)
Q Consensus 142 ---~~~~~e-----------------~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~-------~g~~~~ilRp~~v~Gp~~ 194 (485)
..+.+| ..+.+..|.+.|+.+|...|.+++.++.+ .++++++++||.+.++..
T Consensus 156 ~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~~~~~i~v~~v~PG~v~t~~~ 235 (276)
T 1wma_A 156 KFRSETITEEELVGLMNKFVEDTKKGVHQKEGWPSSAYGVTKIGVTVLSRIHARKLSEQRKGDKILLNACCPGWVRTDMA 235 (276)
T ss_dssp HHHCSSCCHHHHHHHHHHHHHHHHTTCTTTTTCCSCHHHHHHHHHHHHHHHHHHHHHHHCTTSCCEEEEEECCSBCSTTT
T ss_pred hccccccchhhhhhhhhhhhhhhcccccccCCCccchhHHHHHHHHHHHHHHHHHhhcccCCCceEEEEecCCccccCcC
Confidence 000000 00112234589999999999998877654 589999999999987643
Q ss_pred CCChHHHHHHHHcCCCeEEecCCCceeecccHHHHHHHHHHHHH
Q 047227 195 RLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICAER 238 (485)
Q Consensus 195 ~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~D~a~a~~~~~~ 238 (485)
.. ..+.+++|+|++++.++.
T Consensus 236 ~~------------------------~~~~~~~~~a~~~~~l~~ 255 (276)
T 1wma_A 236 GP------------------------KATKSPEEGAETPVYLAL 255 (276)
T ss_dssp CT------------------------TCSBCHHHHTHHHHHHHS
T ss_pred Cc------------------------cccCChhHhhhhHhhhhc
Confidence 21 136789999999998865
|
| >3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.4e-18 Score=170.17 Aligned_cols=234 Identities=13% Similarity=0.044 Sum_probs=159.3
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCC-----ccc-hhhhhhh-hcCCCeEEEEecCCCHHHH
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEP-----HEE-QGILGEA-LRSGRAHYVSFDLRHKAQV 77 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~-----~~~-~~~~~~~-~~~~~v~~~~~Dl~d~~~l 77 (485)
.++|++|||||+|+||+++++.|+++| ++|.++++........ .+. ....... ....++.++.+|++|++++
T Consensus 44 l~gk~~lVTGas~GIG~aia~~la~~G-~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v 122 (317)
T 3oec_A 44 LQGKVAFITGAARGQGRTHAVRLAQDG-ADIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQGRRIIARQADVRDLASL 122 (317)
T ss_dssp TTTCEEEESSCSSHHHHHHHHHHHHTT-CEEEEEECCCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHH
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHCC-CeEEEEecccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHH
Confidence 456899999999999999999999999 6999988764321100 011 0001111 1245789999999999988
Q ss_pred HHHhc-------CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHHHh----cC-CCEEEEecCccccccC
Q 047227 78 LQALQ-------GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDACAE----LK-VKRLIYTSSPSVVFDG 138 (485)
Q Consensus 78 ~~~~~-------~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~~~----~~-v~r~V~~SS~~vy~~~ 138 (485)
.++++ ++|++||+||... +.++++..+++|+.++.++.+++.. .+ -.++|++||...+.
T Consensus 123 ~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~g~Iv~isS~~~~~-- 200 (317)
T 3oec_A 123 QAVVDEALAEFGHIDILVSNVGISNQGEVVSLTDQQWSDILQTNLIGAWHACRAVLPSMIERGQGGSVIFVSSTVGLR-- 200 (317)
T ss_dssp HHHHHHHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTCSCEEEEEECCGGGSS--
T ss_pred HHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCCEEEEECcHHhcC--
Confidence 88775 6899999999322 3345677899999999999888754 33 45899999987763
Q ss_pred CCCcCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCChHHHHHHHHcCC--C---
Q 047227 139 VHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGK--S--- 210 (485)
Q Consensus 139 ~~~~~~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~--~--- 210 (485)
+..+...|+.+|...+.+.+.++.+ .|+++.+++||.+.++.... ........... +
T Consensus 201 -------------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~--~~~~~~~~~~~~~~~~~ 265 (317)
T 3oec_A 201 -------------GAPGQSHYAASKHGVQGLMLSLANEVGRHNIRVNSVNPGAVNTEMALN--EKLLKMFLPHLENPTRE 265 (317)
T ss_dssp -------------CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSHHHHC--HHHHHHHCTTCSSCCHH
T ss_pred -------------CCCCCcchHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCcccCccccc--hhhhhhhhhhccccchh
Confidence 1235678999999999999887654 58999999999998763110 00011110000 0
Q ss_pred --eEEe-cCCCceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCCC
Q 047227 211 --KFII-GDGNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMES 262 (485)
Q Consensus 211 --~~~~-g~g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~ 262 (485)
.... ........|++++|+|++++.++... ..-..|+.+++.+|..
T Consensus 266 ~~~~~~~~~~~~p~~~~~pedvA~av~fL~s~~------a~~itG~~i~vdGG~~ 314 (317)
T 3oec_A 266 DAAELFSQLTLLPIPWVEPEDVSNAVAWLASDE------ARYIHGAAIPVDGGQL 314 (317)
T ss_dssp HHHHHHTTTCSSSSSSBCHHHHHHHHHHHTSGG------GTTCCSCEEEESTTGG
T ss_pred HHHHHHhhhccCCCCCCCHHHHHHHHHHHcCCc------ccCCCCCEEEECcchh
Confidence 0000 00111257889999999998875421 1226799999988753
|
| >3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein, unknown function, structural genomics, MCSG, protein structure initiative; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.81 E-value=4.6e-19 Score=168.17 Aligned_cols=218 Identities=14% Similarity=0.083 Sum_probs=155.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCC-ceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc---
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDM-FSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ--- 82 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 82 (485)
+|++|||||+|.||+++++.|.++|. ..|.+.+|...... + +...+ ..++.++.+|++|++++.++++
T Consensus 2 gk~~lVTGas~GIG~aia~~l~~~g~~~~v~~~~r~~~~~~----~---~~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~~ 73 (254)
T 3kzv_A 2 GKVILVTGVSRGIGKSIVDVLFSLDKDTVVYGVARSEAPLK----K---LKEKY-GDRFFYVVGDITEDSVLKQLVNAAV 73 (254)
T ss_dssp CCEEEECSTTSHHHHHHHHHHHHHCSSCEEEEEESCHHHHH----H---HHHHH-GGGEEEEESCTTSHHHHHHHHHHHH
T ss_pred CCEEEEECCCchHHHHHHHHHHhcCCCeEEEEecCCHHHHH----H---HHHHh-CCceEEEECCCCCHHHHHHHHHHHH
Confidence 47999999999999999999999862 57887777643110 0 11111 3578999999999998888775
Q ss_pred ----CCCEEEEcCCCCC--------CCCchhhhHHHHHHHHHHHHHHH----HhcCCCEEEEecCccccccCCCCcCCCC
Q 047227 83 ----GAEVVFHMAAPNS--------SINNHKLHHSVNVEGTKNVIDAC----AELKVKRLIYTSSPSVVFDGVHGIINGN 146 (485)
Q Consensus 83 ----~~d~Vih~aa~~~--------~~~~~~~~~~~nv~~t~~ll~a~----~~~~v~r~V~~SS~~vy~~~~~~~~~~~ 146 (485)
+.|++||+||... +.++++..+++|+.++.++.+++ ++.+ .++|++||...+.
T Consensus 74 ~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~-g~iv~isS~~~~~---------- 142 (254)
T 3kzv_A 74 KGHGKIDSLVANAGVLEPVQNVNEIDVNAWKKLYDINFFSIVSLVGIALPELKKTN-GNVVFVSSDACNM---------- 142 (254)
T ss_dssp HHHSCCCEEEEECCCCCCCTTTTSCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEECCSCCCC----------
T ss_pred HhcCCccEEEECCcccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CeEEEEcCchhcc----------
Confidence 5899999999421 22356778999999999999988 5555 7999999987653
Q ss_pred CCCCCCCCCCchHHHHHHHHHHHHHHHhCC-CCceEEEEecCCcccCCCCCC---------hHHHHHHHHcCCCeEEecC
Q 047227 147 EALPYPPKHNDFYSATKAEGEALVIKANGT-NGLLTCCIRPSSIFGPGDRLL---------VPSLVAAARAGKSKFIIGD 216 (485)
Q Consensus 147 e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~-~g~~~~ilRp~~v~Gp~~~~~---------~~~~~~~~~~g~~~~~~g~ 216 (485)
+..+...|+.+|...+.+.+.++.+ .++++.+++||.+..+..... -+..........
T Consensus 143 -----~~~~~~~Y~asK~a~~~~~~~la~e~~~i~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 210 (254)
T 3kzv_A 143 -----YFSSWGAYGSSKAALNHFAMTLANEERQVKAIAVAPGIVDTDMQVNIRENVGPSSMSAEQLKMFRGLK------- 210 (254)
T ss_dssp -----SSCCSHHHHHHHHHHHHHHHHHHHHCTTSEEEEEECSSCCCCCSCCCCCCCCTTTSCHHHHHHHHHHH-------
T ss_pred -----CCCCcchHHHHHHHHHHHHHHHHhhccCcEEEEEeCCcccchhHHHhhcccCccccCHHHHHHHHHHH-------
Confidence 2345678999999999999987755 489999999999988753321 122222222211
Q ss_pred CCceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCCC
Q 047227 217 GNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMES 262 (485)
Q Consensus 217 g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~ 262 (485)
....+.+++|+|++++.++....+ .-..|+.+++.+++.
T Consensus 211 --~~~r~~~p~dva~~v~~L~s~~~~-----~~itG~~i~vdg~~~ 249 (254)
T 3kzv_A 211 --ENNQLLDSSVPATVYAKLALHGIP-----DGVNGQYLSYNDPAL 249 (254)
T ss_dssp --TTC----CHHHHHHHHHHHHHCCC-----GGGTTCEEETTCGGG
T ss_pred --hcCCcCCcccHHHHHHHHHhhccc-----CCCCccEEEecCccc
Confidence 123477899999999988764210 126789998877653
|
| >3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5} | Back alignment and structure |
|---|
Probab=99.81 E-value=4.3e-19 Score=169.13 Aligned_cols=195 Identities=16% Similarity=0.089 Sum_probs=141.0
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhh-hcCCCeEEEEecCCCHHHHHHHhc-
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEA-LRSGRAHYVSFDLRHKAQVLQALQ- 82 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~l~~~~~- 82 (485)
.+++++|||||+|+||+++++.|+++| ++|.+++|....... ..... ....++.++.+|++|.+++.++++
T Consensus 27 l~~k~vlITGas~gIG~~la~~l~~~G-~~V~~~~r~~~~~~~------~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~ 99 (262)
T 3rkr_A 27 LSGQVAVVTGASRGIGAAIARKLGSLG-ARVVLTARDVEKLRA------VEREIVAAGGEAESHACDLSHSDAIAAFATG 99 (262)
T ss_dssp TTTCEEEESSTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHH------HHHHHHHTTCEEEEEECCTTCHHHHHHHHHH
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHCC-CEEEEEECCHHHHHH------HHHHHHHhCCceeEEEecCCCHHHHHHHHHH
Confidence 456899999999999999999999999 689999887542111 01111 113578999999999998887765
Q ss_pred ------CCCEEEEcCCCC--------CCCCchhhhHHHHHHHHHHHHHHHHh----cCCCEEEEecCccccccCCCCcCC
Q 047227 83 ------GAEVVFHMAAPN--------SSINNHKLHHSVNVEGTKNVIDACAE----LKVKRLIYTSSPSVVFDGVHGIIN 144 (485)
Q Consensus 83 ------~~d~Vih~aa~~--------~~~~~~~~~~~~nv~~t~~ll~a~~~----~~v~r~V~~SS~~vy~~~~~~~~~ 144 (485)
++|+|||+||.. ...++++..+++|+.++.++++++.. .+..++|++||...+.
T Consensus 100 ~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~-------- 171 (262)
T 3rkr_A 100 VLAAHGRCDVLVNNAGVGWFGGPLHTMKPAEWDALIAVNLKAPYLLLRAFAPAMIAAKRGHIINISSLAGKN-------- 171 (262)
T ss_dssp HHHHHSCCSEEEECCCCCCCSSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCEEEEECSSCSSC--------
T ss_pred HHHhcCCCCEEEECCCccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCceEEEEechhhcC--------
Confidence 489999999952 12235667899999999999888643 5677999999987652
Q ss_pred CCCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCcee
Q 047227 145 GNEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVY 221 (485)
Q Consensus 145 ~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~~ 221 (485)
+..+...|+.+|+..+.+.+.++.+ .|+++.+++||.+..+..... . ......
T Consensus 172 -------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~--------~---------~~~~~~ 227 (262)
T 3rkr_A 172 -------PVADGAAYTASKWGLNGLMTSAAEELRQHQVRVSLVAPGSVRTEFGVGL--------S---------AKKSAL 227 (262)
T ss_dssp -------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCC--------------------------------
T ss_pred -------CCCCCchHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCCcCCccccc--------c---------cccccc
Confidence 2345678999999999998877643 689999999999876532110 0 011224
Q ss_pred ecccHHHHHHHHHHHHH
Q 047227 222 DFTYVANVAHAHICAER 238 (485)
Q Consensus 222 ~~i~v~D~a~a~~~~~~ 238 (485)
.++.++|+|++++.++.
T Consensus 228 ~~~~p~dvA~~v~~l~s 244 (262)
T 3rkr_A 228 GAIEPDDIADVVALLAT 244 (262)
T ss_dssp -CCCHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHHhc
Confidence 56789999999998865
|
| >2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=6.9e-19 Score=166.21 Aligned_cols=205 Identities=17% Similarity=0.136 Sum_probs=146.2
Q ss_pred CCCCCCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhh--cCCCeEEEEecCCCHHHHH
Q 047227 1 MSGEENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEAL--RSGRAHYVSFDLRHKAQVL 78 (485)
Q Consensus 1 M~~~~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~Dl~d~~~l~ 78 (485)
|+...++|++|||||+|.||+++++.|.++| ++|.+++|....... ....+ ...++.++.+|++|++++.
T Consensus 1 m~~~l~~k~~lVTGas~gIG~aia~~l~~~G-~~V~~~~r~~~~~~~-------~~~~l~~~~~~~~~~~~Dv~~~~~~~ 72 (247)
T 2jah_A 1 MPSALQGKVALITGASSGIGEATARALAAEG-AAVAIAARRVEKLRA-------LGDELTAAGAKVHVLELDVADRQGVD 72 (247)
T ss_dssp --CTTTTCEEEEESCSSHHHHHHHHHHHHTT-CEEEEEESCHHHHHH-------HHHHHHHTTCCEEEEECCTTCHHHHH
T ss_pred CCccCCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHH-------HHHHHHhcCCcEEEEECCCCCHHHHH
Confidence 6555677899999999999999999999999 689999886431110 11111 1357889999999999888
Q ss_pred HHhc-------CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHHHh----cCCCEEEEecCccccccCCC
Q 047227 79 QALQ-------GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDACAE----LKVKRLIYTSSPSVVFDGVH 140 (485)
Q Consensus 79 ~~~~-------~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~~~----~~v~r~V~~SS~~vy~~~~~ 140 (485)
++++ ++|++||+||... +.++++..+++|+.++.++.+++.. .+ .++|++||...+.
T Consensus 73 ~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-g~iv~isS~~~~~---- 147 (247)
T 2jah_A 73 AAVASTVEALGGLDILVNNAGIMLLGPVEDADTTDWTRMIDTNLLGLMYMTRAALPHLLRSK-GTVVQMSSIAGRV---- 147 (247)
T ss_dssp HHHHHHHHHHSCCSEEEECCCCCCCCCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEECCGGGTC----
T ss_pred HHHHHHHHHcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCC-CEEEEEccHHhcC----
Confidence 7775 6999999999321 2235567899999999999888753 45 7999999977652
Q ss_pred CcCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhC---CCCceEEEEecCCcccCCCCCCh-HHHHHHHHcCCCeEEecC
Q 047227 141 GIINGNEALPYPPKHNDFYSATKAEGEALVIKANG---TNGLLTCCIRPSSIFGPGDRLLV-PSLVAAARAGKSKFIIGD 216 (485)
Q Consensus 141 ~~~~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~---~~g~~~~ilRp~~v~Gp~~~~~~-~~~~~~~~~g~~~~~~g~ 216 (485)
+..+...|+.+|...+.+.+.++. ..|+++++++||.+..+...... ......... . ++
T Consensus 148 -----------~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~-~----~~- 210 (247)
T 2jah_A 148 -----------NVRNAAVYQATKFGVNAFSETLRQEVTERGVRVVVIEPGTTDTELRGHITHTATKEMYEQ-R----IS- 210 (247)
T ss_dssp -----------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBSSSGGGGCCCHHHHHHHHH-H----TT-
T ss_pred -----------CCCCCcHHHHHHHHHHHHHHHHHHHhcccCcEEEEEECCCCCCcchhcccchhhHHHHHh-c----cc-
Confidence 123457899999999988877654 35899999999999876422111 111111110 0 01
Q ss_pred CCceeecccHHHHHHHHHHHHH
Q 047227 217 GNNVYDFTYVANVAHAHICAER 238 (485)
Q Consensus 217 g~~~~~~i~v~D~a~a~~~~~~ 238 (485)
...+..++|+|++++.++.
T Consensus 211 ---~~~~~~pedvA~~v~~l~s 229 (247)
T 2jah_A 211 ---QIRKLQAQDIAEAVRYAVT 229 (247)
T ss_dssp ---TSCCBCHHHHHHHHHHHHH
T ss_pred ---ccCCCCHHHHHHHHHHHhC
Confidence 1125789999999998876
|
| >3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.4e-19 Score=172.58 Aligned_cols=224 Identities=12% Similarity=0.057 Sum_probs=152.1
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhc--CCCeEEEEecCCCHHHHHHHhc
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALR--SGRAHYVSFDLRHKAQVLQALQ 82 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~Dl~d~~~l~~~~~ 82 (485)
.+++++|||||+|.||+++++.|.++| ++|.+++|......... + ....+. ..++.++.+|++|++++.++++
T Consensus 9 l~~k~vlVTGas~GIG~aia~~la~~G-~~V~~~~r~~~~~~~~~-~---~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~ 83 (262)
T 3ksu_A 9 LKNKVIVIAGGIKNLGALTAKTFALES-VNLVLHYHQAKDSDTAN-K---LKDELEDQGAKVALYQSDLSNEEEVAKLFD 83 (262)
T ss_dssp CTTCEEEEETCSSHHHHHHHHHHTTSS-CEEEEEESCGGGHHHHH-H---HHHHHHTTTCEEEEEECCCCSHHHHHHHHH
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEecCccCHHHHH-H---HHHHHHhcCCcEEEEECCCCCHHHHHHHHH
Confidence 456899999999999999999999999 68998877543111000 0 111111 3568899999999999888875
Q ss_pred -------CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHHHhc--CCCEEEEecCccccccCCCCcCCCC
Q 047227 83 -------GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDACAEL--KVKRLIYTSSPSVVFDGVHGIINGN 146 (485)
Q Consensus 83 -------~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~~~~--~v~r~V~~SS~~vy~~~~~~~~~~~ 146 (485)
+.|++||+||... +.++++..+++|+.++.++.+++... +..++|++||...+..
T Consensus 84 ~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~isS~~~~~~--------- 154 (262)
T 3ksu_A 84 FAEKEFGKVDIAINTVGKVLKKPIVETSEAEFDAMDTINNKVAYFFIKQAAKHMNPNGHIITIATSLLAAY--------- 154 (262)
T ss_dssp HHHHHHCSEEEEEECCCCCCSSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEECCCHHHHH---------
T ss_pred HHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhhcCCCEEEEEechhhccC---------
Confidence 5899999999321 23456678899999999999999875 3458999999877642
Q ss_pred CCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCceeec
Q 047227 147 EALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDF 223 (485)
Q Consensus 147 e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~ 223 (485)
......|+.+|+..+.+.+.++.+ .|+++.+++||.+..+..... .................+
T Consensus 155 ------~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~--------~~~~~~~~~~~~~~~~r~ 220 (262)
T 3ksu_A 155 ------TGFYSTYAGNKAPVEHYTRAASKELMKQQISVNAIAPGPMDTSFFYGQ--------ETKESTAFHKSQAMGNQL 220 (262)
T ss_dssp ------HCCCCC-----CHHHHHHHHHHHHTTTTTCEEEEEEECCCCTHHHHTC--------C------------CCCCS
T ss_pred ------CCCCchhHHHHHHHHHHHHHHHHHHHHcCcEEEEEeeCCCcCcccccc--------CchHHHHHHHhcCcccCC
Confidence 123467999999999999887754 489999999999865421000 000001111122233457
Q ss_pred ccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCCCc
Q 047227 224 TYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMESI 263 (485)
Q Consensus 224 i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~~ 263 (485)
..++|+|++++.++.. .. -..|+.+++.++...
T Consensus 221 ~~pedvA~~v~~L~s~-~~------~itG~~i~vdGg~~~ 253 (262)
T 3ksu_A 221 TKIEDIAPIIKFLTTD-GW------WINGQTIFANGGYTT 253 (262)
T ss_dssp CCGGGTHHHHHHHHTT-TT------TCCSCEEEESTTCCC
T ss_pred CCHHHHHHHHHHHcCC-CC------CccCCEEEECCCccC
Confidence 8899999999988653 22 267899999887543
|
| >2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ... | Back alignment and structure |
|---|
Probab=99.80 E-value=1.5e-18 Score=167.81 Aligned_cols=218 Identities=17% Similarity=0.059 Sum_probs=155.4
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCC-ccccCCccchhhhhhh--hcCCCeEEEEecCCC----HHHH
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSD-SIALEPHEEQGILGEA--LRSGRAHYVSFDLRH----KAQV 77 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~-~~~~~~~~~~~~~~~~--~~~~~v~~~~~Dl~d----~~~l 77 (485)
.++|++|||||+|+||+++++.|+++| ++|++++|.. ..... ..... ....++.++.+|++| ++++
T Consensus 21 l~~k~~lVTGas~gIG~aia~~L~~~G-~~V~~~~r~~~~~~~~------~~~~l~~~~~~~~~~~~~Dv~~~~~~~~~v 93 (288)
T 2x9g_A 21 MEAPAAVVTGAAKRIGRAIAVKLHQTG-YRVVIHYHNSAEAAVS------LADELNKERSNTAVVCQADLTNSNVLPASC 93 (288)
T ss_dssp -CCCEEEETTCSSHHHHHHHHHHHHHT-CEEEEEESSCHHHHHH------HHHHHHHHSTTCEEEEECCCSCSTTHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC-CeEEEEeCCchHHHHH------HHHHHHhhcCCceEEEEeecCCccCCHHHH
Confidence 456899999999999999999999999 6999998875 21100 01111 113578899999999 8888
Q ss_pred HHHhc-------CCCEEEEcCCCCC-----------------CCCchhhhHHHHHHHHHHHHHHHHhc----C------C
Q 047227 78 LQALQ-------GAEVVFHMAAPNS-----------------SINNHKLHHSVNVEGTKNVIDACAEL----K------V 123 (485)
Q Consensus 78 ~~~~~-------~~d~Vih~aa~~~-----------------~~~~~~~~~~~nv~~t~~ll~a~~~~----~------v 123 (485)
.++++ ++|+|||+||... ..+++...+++|+.++.++.+++... + .
T Consensus 94 ~~~~~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~ 173 (288)
T 2x9g_A 94 EEIINSCFRAFGRCDVLVNNASAFYPTPLVQGDHEDNSNGKTVETQVAELIGTNAIAPFLLTMSFAQRQKGTNPNCTSSN 173 (288)
T ss_dssp HHHHHHHHHHHSCCCEEEECCCCCCCCCSCCC--------CCHHHHHHHHHHHHTHHHHHHHHHHHHHC--------CCC
T ss_pred HHHHHHHHHhcCCCCEEEECCCCCCCCccccccchhcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCCCCCCC
Confidence 77765 6899999999321 11234568899999999998887653 2 3
Q ss_pred CEEEEecCccccccCCCCcCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCChHH
Q 047227 124 KRLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLLVPS 200 (485)
Q Consensus 124 ~r~V~~SS~~vy~~~~~~~~~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~~~~ 200 (485)
.++|++||...+. +..+...|+.+|...+.+.+.++.+ .|+++++++||.++++. . ..+.
T Consensus 174 g~iv~isS~~~~~---------------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~-~-~~~~ 236 (288)
T 2x9g_A 174 LSIVNLCDAMVDQ---------------PCMAFSLYNMGKHALVGLTQSAALELAPYGIRVNGVAPGVSLLPV-A-MGEE 236 (288)
T ss_dssp EEEEEECCTTTTS---------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSCSCCT-T-SCHH
T ss_pred eEEEEEecccccC---------------CCCCCchHHHHHHHHHHHHHHHHHHhhccCeEEEEEEeccccCcc-c-cChH
Confidence 5899999987753 1245678999999999888876643 48999999999999986 3 2222
Q ss_pred HHHHHHcCCCeEEecCCCceeec-ccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCC
Q 047227 201 LVAAARAGKSKFIIGDGNNVYDF-TYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNME 261 (485)
Q Consensus 201 ~~~~~~~g~~~~~~g~g~~~~~~-i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~ 261 (485)
.........+ ...+ ..++|+|++++.++.... .-..|+.+++.++.
T Consensus 237 ~~~~~~~~~p---------~~r~~~~pedvA~~v~~l~s~~~------~~itG~~i~vdGG~ 283 (288)
T 2x9g_A 237 EKDKWRRKVP---------LGRREASAEQIADAVIFLVSGSA------QYITGSIIKVDGGL 283 (288)
T ss_dssp HHHHHHHTCT---------TTSSCCCHHHHHHHHHHHHSGGG------TTCCSCEEEESTTG
T ss_pred HHHHHHhhCC---------CCCCCCCHHHHHHHHHHHhCccc------cCccCCEEEECcch
Confidence 2222222211 1124 689999999998865221 22678889887764
|
| >2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.80 E-value=1.1e-18 Score=171.64 Aligned_cols=218 Identities=19% Similarity=0.111 Sum_probs=158.0
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEee-cCCccccCCccchhhhhhhh---cCCCeEEEEecCCCHH-----
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIAD-LSDSIALEPHEEQGILGEAL---RSGRAHYVSFDLRHKA----- 75 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~-r~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~Dl~d~~----- 75 (485)
.++|++|||||+|+||+++++.|+++| ++|++++ |....... ....+ ...++.++.+|++|.+
T Consensus 44 l~~k~~lVTGas~GIG~aia~~La~~G-~~Vv~~~~r~~~~~~~-------~~~~l~~~~~~~~~~~~~Dl~d~~~~~~~ 115 (328)
T 2qhx_A 44 PTVPVALVTGAAKRLGRSIAEGLHAEG-YAVCLHYHRSAAEANA-------LSATLNARRPNSAITVQADLSNVATAPVS 115 (328)
T ss_dssp -CCCEEEETTCSSHHHHHHHHHHHHTT-CEEEEEESSCHHHHHH-------HHHHHHHHSTTCEEEEECCCSSSCBCC--
T ss_pred cCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEcCCCHHHHHH-------HHHHHHhhcCCeEEEEEeeCCCchhcccc
Confidence 345799999999999999999999999 6899988 75431110 11111 1357899999999988
Q ss_pred ------------HHHHHhc-------CCCEEEEcCCCCC-------C--------------CCchhhhHHHHHHHHHHHH
Q 047227 76 ------------QVLQALQ-------GAEVVFHMAAPNS-------S--------------INNHKLHHSVNVEGTKNVI 115 (485)
Q Consensus 76 ------------~l~~~~~-------~~d~Vih~aa~~~-------~--------------~~~~~~~~~~nv~~t~~ll 115 (485)
++.++++ ++|+|||+||... . .++++..+++|+.++.+++
T Consensus 116 ~~~~~~~~~~~~~v~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~vN~~g~~~l~ 195 (328)
T 2qhx_A 116 GADGSAPVTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLI 195 (328)
T ss_dssp -----CCBCHHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCSCC-------------CHHHHHHHHHHHHHTHHHHHHH
T ss_pred ccccccccccHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCChhhcCccccccccccccccHHHHHHHHHHHHHHHHHHH
Confidence 7777765 6899999999321 1 2344568899999999998
Q ss_pred HHHHh----cC------CCEEEEecCccccccCCCCcCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEE
Q 047227 116 DACAE----LK------VKRLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTC 182 (485)
Q Consensus 116 ~a~~~----~~------v~r~V~~SS~~vy~~~~~~~~~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ 182 (485)
+++.. .+ ..++|++||...+. +..+...|+.+|...+.+.+.++.+ .|++++
T Consensus 196 ~~~~~~m~~~~~~~~~~~g~IV~isS~~~~~---------------~~~~~~~Y~asKaal~~l~~~la~el~~~gIrvn 260 (328)
T 2qhx_A 196 KAFAHRVAGTPAKHRGTNYSIINMVDAMTNQ---------------PLLGYTIYTMAKGALEGLTRSAALELAPLQIRVN 260 (328)
T ss_dssp HHHHHHHHHSCGGGSCSCEEEEEECCTTTTS---------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEE
T ss_pred HHHHHHHHhcCCcCCCCCcEEEEECchhhcc---------------CCCCcHHHHHHHHHHHHHHHHHHHHHhhcCcEEE
Confidence 88763 34 57999999987653 1245678999999999998887654 489999
Q ss_pred EEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCcee-ecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCC
Q 047227 183 CIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVY-DFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNME 261 (485)
Q Consensus 183 ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~~-~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~ 261 (485)
+++||.+..+. .. ++..........+ .. .+..++|+|++++.++... .....|+.+++.++.
T Consensus 261 ~v~PG~v~T~~-~~-~~~~~~~~~~~~p---------~~~r~~~pedvA~~v~~l~s~~------~~~itG~~i~vdGG~ 323 (328)
T 2qhx_A 261 GVGPGLSVLVD-DM-PPAVWEGHRSKVP---------LYQRDSSAAEVSDVVIFLCSSK------AKYITGTCVKVDGGY 323 (328)
T ss_dssp EEEESSBSCCC-CS-CHHHHHHHHTTCT---------TTTSCBCHHHHHHHHHHHHSGG------GTTCCSCEEEESTTG
T ss_pred EEecCcccCCc-cc-cHHHHHHHHhhCC---------CCCCCCCHHHHHHHHHHHhCcc------ccCccCcEEEECCCc
Confidence 99999999886 33 2433333333221 11 3678999999999886421 123678999998764
Q ss_pred C
Q 047227 262 S 262 (485)
Q Consensus 262 ~ 262 (485)
.
T Consensus 324 ~ 324 (328)
T 2qhx_A 324 S 324 (328)
T ss_dssp G
T ss_pred c
Confidence 3
|
| >3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.80 E-value=4.4e-19 Score=169.47 Aligned_cols=218 Identities=18% Similarity=0.119 Sum_probs=151.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhh--cCCCeEEEEecCCCHHHHHHHhc-
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEAL--RSGRAHYVSFDLRHKAQVLQALQ- 82 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~Dl~d~~~l~~~~~- 82 (485)
++|++|||||+|.||+++++.|.++| ++|.+.++....... . ....+ ...++.++.+|++|++++.++++
T Consensus 26 ~~k~~lVTGas~GIG~aia~~la~~G-~~Vv~~~~~~~~~~~---~---~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~ 98 (267)
T 3u5t_A 26 TNKVAIVTGASRGIGAAIAARLASDG-FTVVINYAGKAAAAE---E---VAGKIEAAGGKALTAQADVSDPAAVRRLFAT 98 (267)
T ss_dssp -CCEEEEESCSSHHHHHHHHHHHHHT-CEEEEEESSCSHHHH---H---HHHHHHHTTCCEEEEECCTTCHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEcCCCHHHHH---H---HHHHHHhcCCeEEEEEcCCCCHHHHHHHHHH
Confidence 45789999999999999999999999 688877543321110 0 11111 23578899999999998888775
Q ss_pred ------CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHHHhcC--CCEEEEecCccccccCCCCcCCCCC
Q 047227 83 ------GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDACAELK--VKRLIYTSSPSVVFDGVHGIINGNE 147 (485)
Q Consensus 83 ------~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~~~~~--v~r~V~~SS~~vy~~~~~~~~~~~e 147 (485)
+.|++||+||... ..++++..+++|+.++.++++++...- -.++|++||...+.
T Consensus 99 ~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~isS~~~~~----------- 167 (267)
T 3u5t_A 99 AEEAFGGVDVLVNNAGIMPLTTIAETGDAVFDRVIAVNLKGTFNTLREAAQRLRVGGRIINMSTSQVGL----------- 167 (267)
T ss_dssp HHHHHSCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCTHHHH-----------
T ss_pred HHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeChhhcc-----------
Confidence 5899999999322 223456788899999999998887641 24899999987753
Q ss_pred CCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCC-hHHHHHHHHcCCCeEEecCCCceeec
Q 047227 148 ALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLL-VPSLVAAARAGKSKFIIGDGNNVYDF 223 (485)
Q Consensus 148 ~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~-~~~~~~~~~~g~~~~~~g~g~~~~~~ 223 (485)
+......|+.||...+.+.+.++.+ .|+++.+++||.+..+..... -......... ......+
T Consensus 168 ----~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~---------~~p~~r~ 234 (267)
T 3u5t_A 168 ----LHPSYGIYAAAKAGVEAMTHVLSKELRGRDITVNAVAPGPTATDLFLEGKSDEVRDRFAK---------LAPLERL 234 (267)
T ss_dssp ----CCTTCHHHHHHHHHHHHHHHHHHHHTTTSCCEEEEEEECCBC-----------CHHHHHT---------SSTTCSC
T ss_pred ----CCCCchHHHHHHHHHHHHHHHHHHHhhhhCCEEEEEEECCCcCccccccCCHHHHHHHHh---------cCCCCCC
Confidence 1234578999999999999887754 489999999999987642111 0111111222 1233457
Q ss_pred ccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCC
Q 047227 224 TYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNM 260 (485)
Q Consensus 224 i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~ 260 (485)
..++|+|++++.++... ..-..|+.+++.+|
T Consensus 235 ~~pedvA~~v~~L~s~~------~~~itG~~i~vdGG 265 (267)
T 3u5t_A 235 GTPQDIAGAVAFLAGPD------GAWVNGQVLRANGG 265 (267)
T ss_dssp BCHHHHHHHHHHHHSTT------TTTCCSEEEEESSS
T ss_pred cCHHHHHHHHHHHhCcc------ccCccCCEEEeCCC
Confidence 78999999999886421 12267899988765
|
| >4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.5e-19 Score=173.57 Aligned_cols=220 Identities=15% Similarity=0.119 Sum_probs=156.1
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhh-hcCCCeEEEEecCCCHHHHHHHhc-
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEA-LRSGRAHYVSFDLRHKAQVLQALQ- 82 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~l~~~~~- 82 (485)
.++|++|||||+|.||+++++.|.++| ++|.+.+|....... ..... ....++.++.+|++|.+++.++++
T Consensus 31 l~gk~~lVTGas~GIG~aia~~la~~G-~~V~~~~r~~~~~~~------~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~ 103 (275)
T 4imr_A 31 LRGRTALVTGSSRGIGAAIAEGLAGAG-AHVILHGVKPGSTAA------VQQRIIASGGTAQELAGDLSEAGAGTDLIER 103 (275)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTT-CEEEEEESSTTTTHH------HHHHHHHTTCCEEEEECCTTSTTHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEcCCHHHHHH------HHHHHHhcCCeEEEEEecCCCHHHHHHHHHH
Confidence 457899999999999999999999999 699999986542111 01111 124678999999999988877765
Q ss_pred -----CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHH----HhcCCCEEEEecCccccccCCCCcCCCC
Q 047227 83 -----GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDAC----AELKVKRLIYTSSPSVVFDGVHGIINGN 146 (485)
Q Consensus 83 -----~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~----~~~~v~r~V~~SS~~vy~~~~~~~~~~~ 146 (485)
+.|++||+||... ..++++..+++|+.++.++.+++ ++.+..++|++||...+.
T Consensus 104 ~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~Iv~isS~~~~~---------- 173 (275)
T 4imr_A 104 AEAIAPVDILVINASAQINATLSALTPNDLAFQLAVNLGSTVDMLQSALPKMVARKWGRVVSIGSINQLR---------- 173 (275)
T ss_dssp HHHHSCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS----------
T ss_pred HHHhCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECCHHhCC----------
Confidence 6899999999321 23456778999999999999887 445567999999987752
Q ss_pred CCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCCh---HHHHHHHHcCCCeEEecCCCce
Q 047227 147 EALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLLV---PSLVAAARAGKSKFIIGDGNNV 220 (485)
Q Consensus 147 e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~~---~~~~~~~~~g~~~~~~g~g~~~ 220 (485)
+..+...|+.||...+.+.+.++.+ .|+++.+++||.+..+...... +.......... ...
T Consensus 174 -----~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~--------~p~ 240 (275)
T 4imr_A 174 -----PKSVVTAYAATKAAQHNLIQSQARDFAGDNVLLNTLAPGLVDTDRNADRRAQDPEGWDEYVRTL--------NWM 240 (275)
T ss_dssp -----CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCSHHHHHHHHHCHHHHHHHHHHH--------STT
T ss_pred -----CCCCchhhHHHHHHHHHHHHHHHHHhcccCcEEEEEEeccccCcccccccccChHHHHHHHhhc--------Ccc
Confidence 2345567999999999998887654 4899999999999865311100 11111111110 011
Q ss_pred eecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCC
Q 047227 221 YDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNM 260 (485)
Q Consensus 221 ~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~ 260 (485)
..+..++|+|++++.++.... .-..|+.+++.+|
T Consensus 241 ~r~~~pedvA~~v~fL~s~~a------~~itG~~i~vdGG 274 (275)
T 4imr_A 241 GRAGRPEEMVGAALFLASEAC------SFMTGETIFLTGG 274 (275)
T ss_dssp CSCBCGGGGHHHHHHHHSGGG------TTCCSCEEEESSC
T ss_pred CCCcCHHHHHHHHHHHcCccc------CCCCCCEEEeCCC
Confidence 235678999999998865221 2267899998765
|
| >3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.79 E-value=3.1e-19 Score=168.94 Aligned_cols=202 Identities=14% Similarity=0.141 Sum_probs=142.6
Q ss_pred CCCCCCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhh-cCCCeEEEEecCCCHHHHHH
Q 047227 1 MSGEENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEAL-RSGRAHYVSFDLRHKAQVLQ 79 (485)
Q Consensus 1 M~~~~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~ 79 (485)
|+-..+++++|||||+|.||+++++.|.++| ++|.+++|..........+ +.... ...++.++.+|++|.+++.+
T Consensus 1 M~~~~~~k~~lVTGas~GIG~aia~~l~~~G-~~V~~~~r~~~~~~~~~~~---~~~~~~~~~~~~~~~~Dv~~~~~v~~ 76 (250)
T 3nyw_A 1 MSLEKQKGLAIITGASQGIGAVIAAGLATDG-YRVVLIARSKQNLEKVHDE---IMRSNKHVQEPIVLPLDITDCTKADT 76 (250)
T ss_dssp ----CCCCEEEEESTTSHHHHHHHHHHHHHT-CEEEEEESCHHHHHHHHHH---HHHHCTTSCCCEEEECCTTCHHHHHH
T ss_pred CcccCCCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHH---HHHhccccCcceEEeccCCCHHHHHH
Confidence 6656678999999999999999999999999 6999998875421110000 11111 12678899999999998887
Q ss_pred Hhc-------CCCEEEEcCCCCC------CCCchhhhHHHHHHHHHHHHHHH----HhcCCCEEEEecCccccccCCCCc
Q 047227 80 ALQ-------GAEVVFHMAAPNS------SINNHKLHHSVNVEGTKNVIDAC----AELKVKRLIYTSSPSVVFDGVHGI 142 (485)
Q Consensus 80 ~~~-------~~d~Vih~aa~~~------~~~~~~~~~~~nv~~t~~ll~a~----~~~~v~r~V~~SS~~vy~~~~~~~ 142 (485)
+++ +.|++||+||... ..++++..+++|+.++.++.+++ ++.+..++|++||...+.
T Consensus 77 ~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~------ 150 (250)
T 3nyw_A 77 EIKDIHQKYGAVDILVNAAAMFMDGSLSEPVDNFRKIMEINVIAQYGILKTVTEIMKVQKNGYIFNVASRAAKY------ 150 (250)
T ss_dssp HHHHHHHHHCCEEEEEECCCCCCCCCCSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECC-----------
T ss_pred HHHHHHHhcCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEccHHhcC------
Confidence 765 5899999999321 12345678999999999998887 345667999999977652
Q ss_pred CCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCc
Q 047227 143 INGNEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNN 219 (485)
Q Consensus 143 ~~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~ 219 (485)
+..+...|+.+|...+.+.+.++.+ .|+++.+++||.+..+ +.... .. ...
T Consensus 151 ---------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~--------~~~~~--~~-------~~~ 204 (250)
T 3nyw_A 151 ---------GFADGGIYGSTKFALLGLAESLYRELAPLGIRVTTLCPGWVNTD--------MAKKA--GT-------PFK 204 (250)
T ss_dssp -----------CCTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCSH--------HHHHT--TC-------CSC
T ss_pred ---------CCCCCcchHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccCc--------hhhhc--CC-------Ccc
Confidence 1234678999999999998877654 4899999999998754 11111 11 112
Q ss_pred eeecccHHHHHHHHHHHHH
Q 047227 220 VYDFTYVANVAHAHICAER 238 (485)
Q Consensus 220 ~~~~i~v~D~a~a~~~~~~ 238 (485)
...+++++|+|++++.++.
T Consensus 205 ~~~~~~p~dva~~v~~l~s 223 (250)
T 3nyw_A 205 DEEMIQPDDLLNTIRCLLN 223 (250)
T ss_dssp GGGSBCHHHHHHHHHHHHT
T ss_pred cccCCCHHHHHHHHHHHHc
Confidence 3458899999999998865
|
| >3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.79 E-value=1e-18 Score=166.51 Aligned_cols=201 Identities=14% Similarity=0.111 Sum_probs=140.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhh--cCCCeEEEEecCCCHHHHHHHhc-
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEAL--RSGRAHYVSFDLRHKAQVLQALQ- 82 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~Dl~d~~~l~~~~~- 82 (485)
++|++|||||+|.||+++++.|.++| ++|.+++|....... ....+ ...++.++.+|++|++++.++++
T Consensus 3 ~~k~~lVTGas~GIG~aia~~la~~G-~~V~~~~r~~~~~~~-------~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~ 74 (264)
T 3tfo_A 3 MDKVILITGASGGIGEGIARELGVAG-AKILLGARRQARIEA-------IATEIRDAGGTALAQVLDVTDRHSVAAFAQA 74 (264)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTT-CEEEEEESSHHHHHH-------HHHHHHHTTCEEEEEECCTTCHHHHHHHHHH
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHCC-CEEEEEECCHHHHHH-------HHHHHHhcCCcEEEEEcCCCCHHHHHHHHHH
Confidence 35899999999999999999999999 689999887532111 11111 13568889999999998887765
Q ss_pred ------CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHHH----hcCCCEEEEecCccccccCCCCcCCC
Q 047227 83 ------GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDACA----ELKVKRLIYTSSPSVVFDGVHGIING 145 (485)
Q Consensus 83 ------~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~~----~~~v~r~V~~SS~~vy~~~~~~~~~~ 145 (485)
+.|++||+||... +.++++..+++|+.++.++.+++. +.+..++|++||...+.
T Consensus 75 ~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~IV~isS~~~~~--------- 145 (264)
T 3tfo_A 75 AVDTWGRIDVLVNNAGVMPLSPLAAVKVDEWERMIDVNIKGVLWGIGAVLPIMEAQRSGQIINIGSIGALS--------- 145 (264)
T ss_dssp HHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTC---------
T ss_pred HHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCeEEEEEcCHHHcc---------
Confidence 5899999999322 234567789999999998877764 34567999999987763
Q ss_pred CCCCCCCCCCCchHHHHHHHHHHHHHHHhCCC-CceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCceeecc
Q 047227 146 NEALPYPPKHNDFYSATKAEGEALVIKANGTN-GLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFT 224 (485)
Q Consensus 146 ~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~-g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i 224 (485)
+......|+.+|...+.+.+.++.+. |+++.+++||.+..+....... ......... ....+.
T Consensus 146 ------~~~~~~~Y~asKaal~~l~~~la~e~~gIrvn~v~PG~v~T~~~~~~~~--------~~~~~~~~~--~~~~~~ 209 (264)
T 3tfo_A 146 ------VVPTAAVYCATKFAVRAISDGLRQESTNIRVTCVNPGVVESELAGTITH--------EETMAAMDT--YRAIAL 209 (264)
T ss_dssp ------CCTTCHHHHHHHHHHHHHHHHHHHHCSSEEEEEEEECCC---------------------------------CC
T ss_pred ------cCCCChhHHHHHHHHHHHHHHHHHhCCCCEEEEEecCCCcCcccccccc--------hhHHHHHHh--hhccCC
Confidence 12345789999999999988876543 8999999999998764221111 000000000 111246
Q ss_pred cHHHHHHHHHHHHHH
Q 047227 225 YVANVAHAHICAERA 239 (485)
Q Consensus 225 ~v~D~a~a~~~~~~~ 239 (485)
.++|+|++++.++..
T Consensus 210 ~pedvA~~v~~l~s~ 224 (264)
T 3tfo_A 210 QPADIARAVRQVIEA 224 (264)
T ss_dssp CHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHhcC
Confidence 899999999999774
|
| >3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold, beta-alpha-beta motifs, open twisted sheet, A NADP, oxidoreductase; 2.30A {Cladosporium herbarum} SCOP: c.2.1.0 PDB: 3gdf_A | Back alignment and structure |
|---|
Probab=99.79 E-value=2.5e-18 Score=164.19 Aligned_cols=223 Identities=14% Similarity=0.043 Sum_probs=160.9
Q ss_pred CCCCEEEEEcCC--CchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhh--hcCCCeEEEEecCCCHHHHHHH
Q 047227 5 ENERLCVVTGGR--GFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEA--LRSGRAHYVSFDLRHKAQVLQA 80 (485)
Q Consensus 5 ~~~~~iLVtGgt--G~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~Dl~d~~~l~~~ 80 (485)
.+++++|||||+ |.||+++++.|.++| ++|.++++...... .+ ..... ....++.++.+|++|.+++.++
T Consensus 18 l~~k~vlITGas~~~giG~~~a~~l~~~G-~~v~~~~~~~~~~~---~~--~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~ 91 (267)
T 3gdg_A 18 LKGKVVVVTGASGPKGMGIEAARGCAEMG-AAVAITYASRAQGA---EE--NVKELEKTYGIKAKAYKCQVDSYESCEKL 91 (267)
T ss_dssp CTTCEEEETTCCSSSSHHHHHHHHHHHTS-CEEEECBSSSSSHH---HH--HHHHHHHHHCCCEECCBCCTTCHHHHHHH
T ss_pred cCCCEEEEECCCCCCChHHHHHHHHHHCC-CeEEEEeCCcchhH---HH--HHHHHHHhcCCceeEEecCCCCHHHHHHH
Confidence 356899999999 999999999999999 68988887653210 00 11111 1146789999999999988877
Q ss_pred hc-------CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHH----HhcCCCEEEEecCccccccCCCCc
Q 047227 81 LQ-------GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDAC----AELKVKRLIYTSSPSVVFDGVHGI 142 (485)
Q Consensus 81 ~~-------~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~----~~~~v~r~V~~SS~~vy~~~~~~~ 142 (485)
++ +.|+|||+||... +.++++..+++|+.++.++.+++ ++.+..++|++||...+...
T Consensus 92 ~~~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~---- 167 (267)
T 3gdg_A 92 VKDVVADFGQIDAFIANAGATADSGILDGSVEAWNHVVQVDLNGTFHCAKAVGHHFKERGTGSLVITASMSGHIAN---- 167 (267)
T ss_dssp HHHHHHHTSCCSEEEECCCCCCCSCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSCC----
T ss_pred HHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhcchHHHHHHHHHHHHHHHcCCceEEEEccccccccC----
Confidence 65 4799999999322 33456778999999999999987 45566799999997765311
Q ss_pred CCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhCCCC--ceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCce
Q 047227 143 INGNEALPYPPKHNDFYSATKAEGEALVIKANGTNG--LLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNV 220 (485)
Q Consensus 143 ~~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~g--~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~ 220 (485)
...+...|+.+|+..+.+.+.++.+.+ +++.++.||.+..+.....-+.......... ..
T Consensus 168 ---------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~i~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~---------~~ 229 (267)
T 3gdg_A 168 ---------FPQEQTSYNVAKAGCIHMARSLANEWRDFARVNSISPGYIDTGLSDFVPKETQQLWHSMI---------PM 229 (267)
T ss_dssp ---------SSSCCHHHHHHHHHHHHHHHHHHHHTTTTCEEEEEEECCEECSCGGGSCHHHHHHHHTTS---------TT
T ss_pred ---------CCCCCCcchHHHHHHHHHHHHHHHHhccCcEEEEEECCccccchhhhCCHHHHHHHHhcC---------CC
Confidence 113557899999999999988775443 8999999999876643333233333333222 33
Q ss_pred eecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCC
Q 047227 221 YDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNME 261 (485)
Q Consensus 221 ~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~ 261 (485)
..+.+++|+|++++.++... .....|+.+++.+|.
T Consensus 230 ~r~~~~~dva~~~~~l~s~~------~~~itG~~i~vdgG~ 264 (267)
T 3gdg_A 230 GRDGLAKELKGAYVYFASDA------STYTTGADLLIDGGY 264 (267)
T ss_dssp SSCEETHHHHHHHHHHHSTT------CTTCCSCEEEESTTG
T ss_pred CCCcCHHHHHhHhheeecCc------cccccCCEEEECCce
Confidence 45778999999999886521 123678999998764
|
| >3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=1.4e-18 Score=162.73 Aligned_cols=212 Identities=15% Similarity=0.077 Sum_probs=150.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc----
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ---- 82 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~---- 82 (485)
+|++|||||+|+||+++++.|+++| ++|.+.+|..........+ +.. ....++.++.+|++|++++.++++
T Consensus 2 ~k~vlITGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~---~~~-~~~~~~~~~~~D~~~~~~v~~~~~~~~~ 76 (235)
T 3l77_A 2 MKVAVITGASRGIGEAIARALARDG-YALALGARSVDRLEKIAHE---LMQ-EQGVEVFYHHLDVSKAESVEEFSKKVLE 76 (235)
T ss_dssp CCEEEEESCSSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHH---HHH-HHCCCEEEEECCTTCHHHHHHHCC-HHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHH---HHh-hcCCeEEEEEeccCCHHHHHHHHHHHHH
Confidence 5799999999999999999999999 6899998875421110000 110 124678999999999999998886
Q ss_pred ---CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHHHhc---CCCEEEEecCccccccCCCCcCCCCCCC
Q 047227 83 ---GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDACAEL---KVKRLIYTSSPSVVFDGVHGIINGNEAL 149 (485)
Q Consensus 83 ---~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~~~~---~v~r~V~~SS~~vy~~~~~~~~~~~e~~ 149 (485)
++|++||+||... +.++++..+++|+.++.++.+++... +..++|++||...+.
T Consensus 77 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~ii~~sS~~~~~------------- 143 (235)
T 3l77_A 77 RFGDVDVVVANAGLGYFKRLEELSEEEFHEMIEVNLLGVWRTLKAFLDSLKRTGGLALVTTSDVSAR------------- 143 (235)
T ss_dssp HHSSCSEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCGGGSS-------------
T ss_pred hcCCCCEEEECCccccccCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEEecchhcc-------------
Confidence 5899999999321 33456788999999999999998652 235778888765542
Q ss_pred CCCCCCCchHHHHHHHHHHHHHHHh-CCCCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCceeecccHHH
Q 047227 150 PYPPKHNDFYSATKAEGEALVIKAN-GTNGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVAN 228 (485)
Q Consensus 150 ~~~~~~~~~Y~~sK~~~E~~~~~~~-~~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~D 228 (485)
+......|+.+|...+.+.+.+. ...++++.+++||.+-.+..... . .......++.++|
T Consensus 144 --~~~~~~~Y~~sKaa~~~~~~~l~~~~~~i~v~~v~PG~v~T~~~~~~------------~-----~~~~~~~~~~p~d 204 (235)
T 3l77_A 144 --LIPYGGGYVSTKWAARALVRTFQIENPDVRFFELRPGAVDTYFGGSK------------P-----GKPKEKGYLKPDE 204 (235)
T ss_dssp --CCTTCHHHHHHHHHHHHHHHHHHHHCTTSEEEEEEECSBSSSTTTCC------------S-----CCCGGGTCBCHHH
T ss_pred --cCCCcchHHHHHHHHHHHHHHHhhcCCCeEEEEEeCCcccccccccc------------C-----CcccccCCCCHHH
Confidence 12344689999999999998864 24589999999999876532211 0 0112225788999
Q ss_pred HHHHHHHHHHHhccccchhhccCCcEEEeeCCC
Q 047227 229 VAHAHICAERALASEVTVAEKAAGQAYFVTNME 261 (485)
Q Consensus 229 ~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~ 261 (485)
+|++++.++...... ..++......++
T Consensus 205 va~~v~~l~~~~~~~------~~~~~~~~~~~~ 231 (235)
T 3l77_A 205 IAEAVRCLLKLPKDV------RVEELMLRSVYQ 231 (235)
T ss_dssp HHHHHHHHHTSCTTC------CCCEEEECCTTS
T ss_pred HHHHHHHHHcCCCCC------ccceEEEeeccc
Confidence 999999987642221 455555554444
|
| >4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.2e-18 Score=166.87 Aligned_cols=201 Identities=18% Similarity=0.144 Sum_probs=139.3
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc--
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ-- 82 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 82 (485)
..++++|||||+|+||+++++.|.++| ++|.+++|....... ....+ ..++.++.+|++|++++.++++
T Consensus 26 ~~~k~~lVTGas~GIG~aia~~la~~G-~~V~~~~r~~~~~~~-------~~~~~-~~~~~~~~~Dv~d~~~v~~~~~~~ 96 (272)
T 4dyv_A 26 TGKKIAIVTGAGSGVGRAVAVALAGAG-YGVALAGRRLDALQE-------TAAEI-GDDALCVPTDVTDPDSVRALFTAT 96 (272)
T ss_dssp --CCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHH-------HHHHH-TSCCEEEECCTTSHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEECCHHHHHH-------HHHHh-CCCeEEEEecCCCHHHHHHHHHHH
Confidence 346889999999999999999999999 699999886432110 11111 3578999999999999888875
Q ss_pred -----CCCEEEEcCCCCC--------CCCchhhhHHHHHHHHHHHHHHHHhc----C--CCEEEEecCccccccCCCCcC
Q 047227 83 -----GAEVVFHMAAPNS--------SINNHKLHHSVNVEGTKNVIDACAEL----K--VKRLIYTSSPSVVFDGVHGII 143 (485)
Q Consensus 83 -----~~d~Vih~aa~~~--------~~~~~~~~~~~nv~~t~~ll~a~~~~----~--v~r~V~~SS~~vy~~~~~~~~ 143 (485)
++|++||+||... +.++++..+++|+.++.++.+++... + ..++|++||...+.
T Consensus 97 ~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~g~IV~isS~~~~~------- 169 (272)
T 4dyv_A 97 VEKFGRVDVLFNNAGTGAPAIPMEDLTFAQWKQVVDTNLTGPFLCTQEAFRVMKAQEPRGGRIINNGSISATS------- 169 (272)
T ss_dssp HHHHSCCCEEEECCCCCCCSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSSCCEEEEEECCSSTTS-------
T ss_pred HHHcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCCcEEEEECchhhcC-------
Confidence 6999999999422 22355778999999988888776543 3 35999999987652
Q ss_pred CCCCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCce
Q 047227 144 NGNEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNV 220 (485)
Q Consensus 144 ~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~ 220 (485)
+..+...|+.+|...+.+.+.++.+ .++++.+++||.+..+......... .... .....
T Consensus 170 --------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~--------~~~~--~~~~~ 231 (272)
T 4dyv_A 170 --------PRPYSAPYTATKHAITGLTKSTSLDGRVHDIACGQIDIGNADTPMAQKMKAGV--------PQAD--LSIKV 231 (272)
T ss_dssp --------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEEECC------------------------------
T ss_pred --------CCCCchHHHHHHHHHHHHHHHHHHHhCccCEEEEEEEECcccChhhhhhcccc--------hhhh--hcccc
Confidence 2345678999999999998887644 5899999999999876432211110 0000 11123
Q ss_pred eecccHHHHHHHHHHHHHH
Q 047227 221 YDFTYVANVAHAHICAERA 239 (485)
Q Consensus 221 ~~~i~v~D~a~a~~~~~~~ 239 (485)
..+.+++|+|++++.++..
T Consensus 232 ~~~~~pedvA~~v~fL~s~ 250 (272)
T 4dyv_A 232 EPVMDVAHVASAVVYMASL 250 (272)
T ss_dssp ----CHHHHHHHHHHHHHS
T ss_pred cCCCCHHHHHHHHHHHhCC
Confidence 4578999999999998774
|
| >3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=3.5e-18 Score=161.45 Aligned_cols=213 Identities=15% Similarity=0.118 Sum_probs=148.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc-----
Q 047227 8 RLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ----- 82 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~----- 82 (485)
|++|||||+|+||+++++.|.++| ++|.+++|...... + ....+ ..++.++.+|++|++++.++++
T Consensus 1 k~vlVTGas~gIG~aia~~l~~~G-~~V~~~~r~~~~~~----~---~~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 71 (248)
T 3asu_A 1 MIVLVTGATAGFGECITRRFIQQG-HKVIATGRRQERLQ----E---LKDEL-GDNLYIAQLDVRNRAAIEEMLASLPAE 71 (248)
T ss_dssp CEEEETTTTSTTHHHHHHHHHHTT-CEEEEEESCHHHHH----H---HHHHH-CTTEEEEECCTTCHHHHHHHHHTSCTT
T ss_pred CEEEEECCCChHHHHHHHHHHHCC-CEEEEEeCCHHHHH----H---HHHHh-cCceEEEEcCCCCHHHHHHHHHHHHHh
Confidence 579999999999999999999999 69999988643110 0 11111 2478899999999999988875
Q ss_pred --CCCEEEEcCCCCC--------CCCchhhhHHHHHHHHHHHHHHHH----hcCCCEEEEecCccccccCCCCcCCCCCC
Q 047227 83 --GAEVVFHMAAPNS--------SINNHKLHHSVNVEGTKNVIDACA----ELKVKRLIYTSSPSVVFDGVHGIINGNEA 148 (485)
Q Consensus 83 --~~d~Vih~aa~~~--------~~~~~~~~~~~nv~~t~~ll~a~~----~~~v~r~V~~SS~~vy~~~~~~~~~~~e~ 148 (485)
++|++||+||... +.++++..+++|+.++.++.+++. +.+..++|++||...+.
T Consensus 72 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~------------ 139 (248)
T 3asu_A 72 WCNIDILVNNAGLALGMEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVERNHGHIINIGSTAGSW------------ 139 (248)
T ss_dssp TCCCCEEEECCCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTS------------
T ss_pred CCCCCEEEECCCcCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCceEEEEccchhcc------------
Confidence 5899999999431 223567789999999999888876 45667999999987652
Q ss_pred CCCCCCCCchHHHHHHHHHHHHHHHhC---CCCceEEEEecCCccc-CCCCCChHHHHHHHHcCCCeEEecCCCceeecc
Q 047227 149 LPYPPKHNDFYSATKAEGEALVIKANG---TNGLLTCCIRPSSIFG-PGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFT 224 (485)
Q Consensus 149 ~~~~~~~~~~Y~~sK~~~E~~~~~~~~---~~g~~~~ilRp~~v~G-p~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i 224 (485)
+..+...|+.+|...+.+.+.++. ..|+++.+++||.+.| +........-.... .. .. .....+
T Consensus 140 ---~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~gT~~~~~~~~~~~~~~---~~--~~----~~~~~~ 207 (248)
T 3asu_A 140 ---PYAGGNVYGATKAFVRQFSLNLRTDLHGTAVRVTDIEPGLVGGTEFSNVRFKGDDGKA---EK--TY----QNTVAL 207 (248)
T ss_dssp ---CCTTCHHHHHHHHHHHHHHHHHHHHTTTSCCEEEEEEECSBCC-------------------------------CCB
T ss_pred ---CCCCCchHHHHHHHHHHHHHHHHHHhhhcCcEEEEEeccccccCcchhhcccCchHHH---HH--HH----hccCCC
Confidence 123457899999999999888764 3589999999999985 43211000000000 00 00 012346
Q ss_pred cHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCC
Q 047227 225 YVANVAHAHICAERALASEVTVAEKAAGQAYFVTNM 260 (485)
Q Consensus 225 ~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~ 260 (485)
.++|+|++++.++.. .....++...+.+.
T Consensus 208 ~p~dvA~~v~~l~s~-------~~~~~g~~i~v~~~ 236 (248)
T 3asu_A 208 TPEDVSEAVWWVSTL-------PAHVNINTLEMMPV 236 (248)
T ss_dssp CHHHHHHHHHHHHHS-------CTTCCCCEEEECCT
T ss_pred CHHHHHHHHHHHhcC-------CccceeeEEEEccc
Confidence 899999999988763 12356777776553
|
| >3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.3e-18 Score=165.00 Aligned_cols=221 Identities=17% Similarity=0.106 Sum_probs=156.9
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhh-hcCCCeEEEEecCCCHHHHHHHhcC
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEA-LRSGRAHYVSFDLRHKAQVLQALQG 83 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~l~~~~~~ 83 (485)
.++|++|||||+|.||+++++.|+++| +.|.++++...... ++ ..... ....++.++.+|++|.+++.++++.
T Consensus 5 l~~k~vlITGas~gIG~~~a~~l~~~G-~~v~~~~~~~~~~~---~~--~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 78 (255)
T 3icc_A 5 LKGKVALVTGASRGIGRAIAKRLANDG-ALVAIHYGNRKEEA---EE--TVYEIQSNGGSAFSIGANLESLHGVEALYSS 78 (255)
T ss_dssp TTTCEEEETTCSSHHHHHHHHHHHHTT-CEEEEEESSCSHHH---HH--HHHHHHHTTCEEEEEECCTTSHHHHHHHHHH
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHCC-CeEEEEeCCchHHH---HH--HHHHHHhcCCceEEEecCcCCHHHHHHHHHH
Confidence 456899999999999999999999999 58877644322110 00 11111 1235688899999999887776642
Q ss_pred -------------CCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHHHhc--CCCEEEEecCccccccCCCC
Q 047227 84 -------------AEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDACAEL--KVKRLIYTSSPSVVFDGVHG 141 (485)
Q Consensus 84 -------------~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~~~~--~v~r~V~~SS~~vy~~~~~~ 141 (485)
+|++||+||... ..++++..+++|+.++.++.+++... +..++|++||...+.
T Consensus 79 ~~~~~~~~~~~~~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~isS~~~~~----- 153 (255)
T 3icc_A 79 LDNELQNRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRDNSRIINISSAATRI----- 153 (255)
T ss_dssp HHHHHHHHHSSSCEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEECCGGGTS-----
T ss_pred HHHHhcccccCCcccEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHhhCCCCEEEEeCChhhcc-----
Confidence 899999999322 22345678899999999999999865 345899999987753
Q ss_pred cCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCCh--HHHHHHHHcCCCeEEecC
Q 047227 142 IINGNEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLLV--PSLVAAARAGKSKFIIGD 216 (485)
Q Consensus 142 ~~~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~~--~~~~~~~~~g~~~~~~g~ 216 (485)
+......|+.+|+..+.+.+.++.+ .++++.+++||.+..+...... +.+........
T Consensus 154 ----------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~------- 216 (255)
T 3icc_A 154 ----------SLPDFIAYSMTKGAINTMTFTLAKQLGARGITVNAILPGFVKTDMNAELLSDPMMKQYATTIS------- 216 (255)
T ss_dssp ----------CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCCSSSTTTTTSHHHHHHHHHTS-------
T ss_pred ----------CCCCcchhHHhHHHHHHHHHHHHHHHHhcCeEEEEEEEeeecccchhhhcccHHHHHhhhccC-------
Confidence 1234678999999999998877654 5899999999999887543321 11222222222
Q ss_pred CCceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCC
Q 047227 217 GNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNME 261 (485)
Q Consensus 217 g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~ 261 (485)
....+.+++|+|++++.++... ..-..|+.+++.++.
T Consensus 217 --~~~~~~~~~dva~~~~~l~s~~------~~~~tG~~i~vdgG~ 253 (255)
T 3icc_A 217 --AFNRLGEVEDIADTAAFLASPD------SRWVTGQLIDVSGGS 253 (255)
T ss_dssp --TTSSCBCHHHHHHHHHHHHSGG------GTTCCSCEEEESSST
T ss_pred --CcCCCCCHHHHHHHHHHHhCcc------cCCccCCEEEecCCe
Confidence 2245778999999998876522 223679999998864
|
| >1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=4.5e-18 Score=164.65 Aligned_cols=218 Identities=19% Similarity=0.111 Sum_probs=156.1
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEee-cCCccccCCccchhhhhhhh---cCCCeEEEEecCCCHH-----
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIAD-LSDSIALEPHEEQGILGEAL---RSGRAHYVSFDLRHKA----- 75 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~-r~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~Dl~d~~----- 75 (485)
.++|++|||||+|.||+++++.|.++| ++|++++ |....... ....+ ...++.++.+|++|++
T Consensus 7 l~~k~~lVTGas~GIG~aia~~la~~G-~~V~~~~~r~~~~~~~-------~~~~l~~~~~~~~~~~~~Dl~~~~~~~~~ 78 (291)
T 1e7w_A 7 PTVPVALVTGAAKRLGRSIAEGLHAEG-YAVCLHYHRSAAEANA-------LSATLNARRPNSAITVQADLSNVATAPVS 78 (291)
T ss_dssp -CCCEEEETTCSSHHHHHHHHHHHHTT-CEEEEEESSCHHHHHH-------HHHHHHHHSTTCEEEEECCCSSSCBCCCC
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCC-CeEEEEcCCCHHHHHH-------HHHHHhhhcCCeeEEEEeecCCccccccc
Confidence 456899999999999999999999999 6899988 76431110 11111 1357899999999988
Q ss_pred ------------HHHHHhc-------CCCEEEEcCCCCC-------C--------------CCchhhhHHHHHHHHHHHH
Q 047227 76 ------------QVLQALQ-------GAEVVFHMAAPNS-------S--------------INNHKLHHSVNVEGTKNVI 115 (485)
Q Consensus 76 ------------~l~~~~~-------~~d~Vih~aa~~~-------~--------------~~~~~~~~~~nv~~t~~ll 115 (485)
++.++++ +.|++||+||... . .++++..+++|+.++.++.
T Consensus 79 ~~~~~~~~~~~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~ 158 (291)
T 1e7w_A 79 GADGSAPVTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLI 158 (291)
T ss_dssp ----CCCBCHHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCCCC-------------HHHHHHHHHHHHHHTHHHHHHH
T ss_pred ccccccccchHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCChhhcCccccccccccccccHHHHHHHHHHHhHHHHHHH
Confidence 8877765 6899999999321 1 3345678899999999998
Q ss_pred HHHHh----cC------CCEEEEecCccccccCCCCcCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEE
Q 047227 116 DACAE----LK------VKRLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTC 182 (485)
Q Consensus 116 ~a~~~----~~------v~r~V~~SS~~vy~~~~~~~~~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ 182 (485)
+++.. .+ ..++|++||...+. +..+...|+.+|...+.+.+.++.+ .|+++.
T Consensus 159 ~~~~~~m~~~~~~~~~~~g~Iv~isS~~~~~---------------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn 223 (291)
T 1e7w_A 159 KAFAHRVAGTPAKHRGTNYSIINMVDAMTNQ---------------PLLGYTIYTMAKGALEGLTRSAALELAPLQIRVN 223 (291)
T ss_dssp HHHHHHHHTSCGGGSCSCEEEEEECCTTTTS---------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEE
T ss_pred HHHHHHHHhcCCCCCCCCcEEEEEechhhcC---------------CCCCCchhHHHHHHHHHHHHHHHHHHHhcCeEEE
Confidence 88763 34 57999999987653 1235678999999999998877643 589999
Q ss_pred EEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCcee-ecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCC
Q 047227 183 CIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVY-DFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNME 261 (485)
Q Consensus 183 ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~~-~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~ 261 (485)
+++||.+..+. . .-+..........+ .. .+..++|+|++++.++... ..-..|+.+++.++.
T Consensus 224 ~v~PG~v~T~~-~-~~~~~~~~~~~~~p---------~~~r~~~pedvA~~v~~l~s~~------~~~itG~~i~vdGG~ 286 (291)
T 1e7w_A 224 GVGPGLSVLVD-D-MPPAVWEGHRSKVP---------LYQRDSSAAEVSDVVIFLCSSK------AKYITGTCVKVDGGY 286 (291)
T ss_dssp EEEESSBCCGG-G-SCHHHHHHHHTTCT---------TTTSCBCHHHHHHHHHHHHSGG------GTTCCSCEEEESTTG
T ss_pred EEeeCCccCCc-c-CCHHHHHHHHhhCC---------CCCCCCCHHHHHHHHHHHhCCc------ccCccCcEEEECCCc
Confidence 99999987664 2 11333332322211 11 3667999999999886521 123678899888764
Q ss_pred C
Q 047227 262 S 262 (485)
Q Consensus 262 ~ 262 (485)
.
T Consensus 287 ~ 287 (291)
T 1e7w_A 287 S 287 (291)
T ss_dssp G
T ss_pred c
Confidence 3
|
| >3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.5e-18 Score=161.96 Aligned_cols=191 Identities=16% Similarity=0.102 Sum_probs=138.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcC---
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQG--- 83 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~--- 83 (485)
||++|||||+|+||+++++.|+++| ++|.+++|....... ....+ ..++.++.+|++|.+++.++++.
T Consensus 1 Mk~vlVTGas~gIG~~~a~~l~~~G-~~V~~~~r~~~~~~~-------~~~~~-~~~~~~~~~D~~~~~~v~~~~~~~~~ 71 (230)
T 3guy_A 1 MSLIVITGASSGLGAELAKLYDAEG-KATYLTGRSESKLST-------VTNCL-SNNVGYRARDLASHQEVEQLFEQLDS 71 (230)
T ss_dssp --CEEEESTTSHHHHHHHHHHHHTT-CCEEEEESCHHHHHH-------HHHTC-SSCCCEEECCTTCHHHHHHHHHSCSS
T ss_pred CCEEEEecCCchHHHHHHHHHHHCC-CEEEEEeCCHHHHHH-------HHHHH-hhccCeEeecCCCHHHHHHHHHHHhh
Confidence 3679999999999999999999999 689999887542110 11111 35788999999999999998875
Q ss_pred -CCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHHHhcC---CCEEEEecCccccccCCCCcCCCCCCCCCC
Q 047227 84 -AEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDACAELK---VKRLIYTSSPSVVFDGVHGIINGNEALPYP 152 (485)
Q Consensus 84 -~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~~~~~---v~r~V~~SS~~vy~~~~~~~~~~~e~~~~~ 152 (485)
.|+|||+||... ..++++..+++|+.++.++++++...- ..++|++||...+. +
T Consensus 72 ~~d~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~iv~isS~~~~~---------------~ 136 (230)
T 3guy_A 72 IPSTVVHSAGSGYFGLLQEQDPEQIQTLIENNLSSAINVLRELVKRYKDQPVNVVMIMSTAAQQ---------------P 136 (230)
T ss_dssp CCSEEEECCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCEEEEECCGGGTS---------------C
T ss_pred cCCEEEEeCCcCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeecccCC---------------C
Confidence 499999999321 233566789999999999999887642 22999999987763 2
Q ss_pred CCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCceeecccHHHH
Q 047227 153 PKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANV 229 (485)
Q Consensus 153 ~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~D~ 229 (485)
..+...|+.+|+..+.+.+.++.+ .|+++.+++||.+..+.... .. .......+.+++|+
T Consensus 137 ~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~--------~~---------~~~~~~~~~~~~dv 199 (230)
T 3guy_A 137 KAQESTYCAVKWAVKGLIESVRLELKGKPMKIIAVYPGGMATEFWET--------SG---------KSLDTSSFMSAEDA 199 (230)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHTTTSSCEEEEEEECCC---------------------------------CCCHHHH
T ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHhcCeEEEEEECCcccChHHHh--------cC---------CCCCcccCCCHHHH
Confidence 345678999999999998887654 47999999999987653211 00 11123468899999
Q ss_pred HHHHHHHHH
Q 047227 230 AHAHICAER 238 (485)
Q Consensus 230 a~a~~~~~~ 238 (485)
|++++.++.
T Consensus 200 A~~i~~l~~ 208 (230)
T 3guy_A 200 ALMIHGALA 208 (230)
T ss_dssp HHHHHHHCC
T ss_pred HHHHHHHHh
Confidence 999998754
|
| >1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=7.7e-21 Score=187.08 Aligned_cols=190 Identities=16% Similarity=0.165 Sum_probs=133.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCc------eEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHH
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMF------SVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQA 80 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~------~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~ 80 (485)
.|||+||||+||||++++..|+++|+. +|+++|+..... ...+ ....+....+.++ +|+++.+.+.++
T Consensus 4 ~mkVlVtGaaGfIG~~l~~~L~~~g~~~~~~~~ev~l~D~~~~~~----~~~g-~~~dl~~~~~~~~-~di~~~~~~~~a 77 (327)
T 1y7t_A 4 PVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMK----ALEG-VVMELEDCAFPLL-AGLEATDDPKVA 77 (327)
T ss_dssp CEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHH----HHHH-HHHHHHTTTCTTE-EEEEEESCHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCCCCCCCEEEEEeCCCchh----hccc-hhhhhhccccccc-CCeEeccChHHH
Confidence 379999999999999999999999852 799988753100 0000 0111111122333 577766667888
Q ss_pred hcCCCEEEEcCCCCC-CCCchhhhHHHHHHHHHHHHHHHHhcC-CC-EEEEecCccc-cccCCCCcCCCCCCCCCCCCCC
Q 047227 81 LQGAEVVFHMAAPNS-SINNHKLHHSVNVEGTKNVIDACAELK-VK-RLIYTSSPSV-VFDGVHGIINGNEALPYPPKHN 156 (485)
Q Consensus 81 ~~~~d~Vih~aa~~~-~~~~~~~~~~~nv~~t~~ll~a~~~~~-v~-r~V~~SS~~v-y~~~~~~~~~~~e~~~~~~~~~ 156 (485)
++++|+|||+|+... ...++..+++.|+.++++++++|++.+ ++ +++++|++.- ... ...+.+ + +..|.
T Consensus 78 ~~~~D~Vih~Ag~~~~~~~~~~~~~~~Nv~~t~~l~~a~~~~~~~~~~vvv~snp~~~~~~-----~~~~~~-~-~~~p~ 150 (327)
T 1y7t_A 78 FKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGNPANTNAL-----IAYKNA-P-GLNPR 150 (327)
T ss_dssp TTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHH-----HHHHTC-T-TSCGG
T ss_pred hCCCCEEEECCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCchhhhHH-----HHHHHc-C-CCChh
Confidence 999999999999433 345677899999999999999999986 64 8888887541 100 000111 0 13466
Q ss_pred chHHHHHHHHHHHHHHHhCCCCceEEEEecCCcccCCCCCChHHHHHHHHcCC
Q 047227 157 DFYSATKAEGEALVIKANGTNGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGK 209 (485)
Q Consensus 157 ~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~ 209 (485)
+.|+.+|..+|++...+++.+|++++++||++||||+.+..++.+......|+
T Consensus 151 ~~yg~tkl~~er~~~~~a~~~g~~~~~vr~~~V~G~h~~~~~~~~~~~~~~g~ 203 (327)
T 1y7t_A 151 NFTAMTRLDHNRAKAQLAKKTGTGVDRIRRMTVWGNHSSTMFPDLFHAEVDGR 203 (327)
T ss_dssp GEEECCHHHHHHHHHHHHHHHTCCGGGEECCEEEBCSSTTCEEECSSCEETTE
T ss_pred heeccchHHHHHHHHHHHHHhCcChhheeeeEEEcCCCCeEEEEeeeeeeCCe
Confidence 78999999999999988888899999999999999986655554443333343
|
| >3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.5e-17 Score=160.41 Aligned_cols=218 Identities=13% Similarity=0.117 Sum_probs=152.7
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhh--hcCCCeEEEEecCCCHHHHHHHhc
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEA--LRSGRAHYVSFDLRHKAQVLQALQ 82 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~Dl~d~~~l~~~~~ 82 (485)
.+++++|||||+|.||+++++.|.++| ++|.+++|.................. ....++.++.+|++|++++.++++
T Consensus 7 l~~k~vlVTGas~GIG~aia~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~ 85 (285)
T 3sc4_A 7 LRGKTMFISGGSRGIGLAIAKRVAADG-ANVALVAKSAEPHPKLPGTIYTAAKEIEEAGGQALPIVGDIRDGDAVAAAVA 85 (285)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHTTT-CEEEEEESCCSCCSSSCCCHHHHHHHHHHHTSEEEEEECCTTSHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECChhhhhhhhHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHH
Confidence 457899999999999999999999999 69999998765322211110001111 124578999999999998888775
Q ss_pred -------CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHHHhc----CCCEEEEecCccccccCCCCcCC
Q 047227 83 -------GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDACAEL----KVKRLIYTSSPSVVFDGVHGIIN 144 (485)
Q Consensus 83 -------~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~~~~----~v~r~V~~SS~~vy~~~~~~~~~ 144 (485)
+.|++||+||... ..++++..+++|+.++.++.+++... +..++|++||...+...
T Consensus 86 ~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~------ 159 (285)
T 3sc4_A 86 KTVEQFGGIDICVNNASAINLGSIEEVPLKRFDLMNGIQVRGTYAVSQSCIPHMKGRDNPHILTLSPPIRLEPK------ 159 (285)
T ss_dssp HHHHHHSCCSEEEECCCCCCCCCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGTTTSSSCEEEECCCCCCCSGG------
T ss_pred HHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECChhhccCC------
Confidence 6999999999321 22355678889999999999988765 56799999997654210
Q ss_pred CCCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCcee
Q 047227 145 GNEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVY 221 (485)
Q Consensus 145 ~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~~ 221 (485)
..+...|+.||+..+.+.+.++.+ .|+++.+++||.+... .+........ ....
T Consensus 160 --------~~~~~~Y~asKaal~~~~~~la~e~~~~gI~vn~v~PG~~v~t-------~~~~~~~~~~--------~~~~ 216 (285)
T 3sc4_A 160 --------WLRPTPYMMAKYGMTLCALGIAEELRDAGIASNTLWPRTTVAT-------AAVQNLLGGD--------EAMA 216 (285)
T ss_dssp --------GSCSHHHHHHHHHHHHHHHHHHHHTGGGTCEEEEEECSSCBCC-------HHHHHHHTSC--------CCCT
T ss_pred --------CCCCchHHHHHHHHHHHHHHHHHHhcccCcEEEEEeCCCcccc-------HHHHhhcccc--------cccc
Confidence 134478999999999998887654 5899999999953322 1222222221 1223
Q ss_pred ecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeC
Q 047227 222 DFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTN 259 (485)
Q Consensus 222 ~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~ 259 (485)
.+..++|+|++++.++.... ...|+.+.+.+
T Consensus 217 r~~~pedvA~~~~~l~s~~~-------~~tG~~i~~dg 247 (285)
T 3sc4_A 217 RSRKPEVYADAAYVVLNKPS-------SYTGNTLLCED 247 (285)
T ss_dssp TCBCTHHHHHHHHHHHTSCT-------TCCSCEEEHHH
T ss_pred CCCCHHHHHHHHHHHhCCcc-------cccceEEEEcC
Confidence 46789999999998865211 25566665543
|
| >2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.77 E-value=6.6e-18 Score=161.73 Aligned_cols=214 Identities=11% Similarity=0.062 Sum_probs=145.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhc-CCCeEEEEecCCCHHHHHHHhcC---
Q 047227 8 RLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALR-SGRAHYVSFDLRHKAQVLQALQG--- 83 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~Dl~d~~~l~~~~~~--- 83 (485)
|++|||||+|+||+++++.|.++| ++|++++|....... ....+. ..++.++.+|++|++++.++++.
T Consensus 22 k~vlVTGas~gIG~aia~~La~~G-~~V~~~~r~~~~~~~-------~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 93 (272)
T 2nwq_A 22 STLFITGATSGFGEACARRFAEAG-WSLVLTGRREERLQA-------LAGELSAKTRVLPLTLDVRDRAAMSAAVDNLPE 93 (272)
T ss_dssp CEEEESSTTTSSHHHHHHHHHHTT-CEEEEEESCHHHHHH-------HHHHHTTTSCEEEEECCTTCHHHHHHHHHTCCG
T ss_pred cEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHH-------HHHHhhcCCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence 789999999999999999999999 699999886431100 111111 14788999999999999988864
Q ss_pred ----CCEEEEcCCCCC--------CCCchhhhHHHHHHHHHHHHHHHH----hcCCC-EEEEecCccccccCCCCcCCCC
Q 047227 84 ----AEVVFHMAAPNS--------SINNHKLHHSVNVEGTKNVIDACA----ELKVK-RLIYTSSPSVVFDGVHGIINGN 146 (485)
Q Consensus 84 ----~d~Vih~aa~~~--------~~~~~~~~~~~nv~~t~~ll~a~~----~~~v~-r~V~~SS~~vy~~~~~~~~~~~ 146 (485)
.|+|||+||... ..++++..+++|+.++.++.+++. +.+.. ++|++||...+.
T Consensus 94 ~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~~IV~isS~~~~~---------- 163 (272)
T 2nwq_A 94 EFATLRGLINNAGLALGTDPAQSCDLDDWDTMVDTNIKGLLYSTRLLLPRLIAHGAGASIVNLGSVAGKW---------- 163 (272)
T ss_dssp GGSSCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCTTCEEEEECCGGGTS----------
T ss_pred HhCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeCCchhcc----------
Confidence 599999999432 123567789999999877766654 55666 999999987652
Q ss_pred CCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCceeec
Q 047227 147 EALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDF 223 (485)
Q Consensus 147 e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~ 223 (485)
+..+...|+.+|...|.+.+.++.+ .|+++++++||.+.++........- ......... ...+
T Consensus 164 -----~~~~~~~Y~asKaa~~~l~~~la~el~~~gIrvn~v~PG~v~T~~~~~~~~~~-----~~~~~~~~~----~~~~ 229 (272)
T 2nwq_A 164 -----PYPGSHVYGGTKAFVEQFSLNLRCDLQGTGVRVTNLEPGLCESEFSLVRFGGD-----QARYDKTYA----GAHP 229 (272)
T ss_dssp -----CCTTCHHHHHHHHHHHHHHHHHHTTCTTSCCEEEEEEECSBC-----------------------------CCCC
T ss_pred -----CCCCCchHHHHHHHHHHHHHHHHHHhCccCeEEEEEEcCCCcCcchhcccccc-----hHHHHHhhc----cCCC
Confidence 1234578999999999999988754 5799999999999877422111000 000000000 0124
Q ss_pred ccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCC
Q 047227 224 TYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNM 260 (485)
Q Consensus 224 i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~ 260 (485)
+.++|+|++++.++.. .....|+.+.+.++
T Consensus 230 ~~pedvA~~v~~l~s~-------~~~~~g~~i~v~~~ 259 (272)
T 2nwq_A 230 IQPEDIAETIFWIMNQ-------PAHLNINSLEIMPV 259 (272)
T ss_dssp BCHHHHHHHHHHHHTS-------CTTEEEEEEEEEET
T ss_pred CCHHHHHHHHHHHhCC-------CccCccceEEEeec
Confidence 7899999999988652 11244566666544
|
| >3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.77 E-value=5.5e-18 Score=158.74 Aligned_cols=190 Identities=17% Similarity=0.062 Sum_probs=140.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc----
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ---- 82 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~---- 82 (485)
+|++|||||+|+||+++++.|.++| ++|.+++|....... ....+ ..++.++.+|++|++++.++++
T Consensus 3 ~k~vlVTGas~GIG~a~a~~l~~~G-~~V~~~~r~~~~~~~-------~~~~~-~~~~~~~~~D~~~~~~v~~~~~~~~~ 73 (235)
T 3l6e_A 3 LGHIIVTGAGSGLGRALTIGLVERG-HQVSMMGRRYQRLQQ-------QELLL-GNAVIGIVADLAHHEDVDVAFAAAVE 73 (235)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHH-------HHHHH-GGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHH-------HHHHh-cCCceEEECCCCCHHHHHHHHHHHHH
Confidence 5799999999999999999999999 699999987542111 11112 2368999999999998887765
Q ss_pred ---CCCEEEEcCCCC-------CCCCchhhhHHHHHHHHHHHHHHHHhc---CCCEEEEecCccccccCCCCcCCCCCCC
Q 047227 83 ---GAEVVFHMAAPN-------SSINNHKLHHSVNVEGTKNVIDACAEL---KVKRLIYTSSPSVVFDGVHGIINGNEAL 149 (485)
Q Consensus 83 ---~~d~Vih~aa~~-------~~~~~~~~~~~~nv~~t~~ll~a~~~~---~v~r~V~~SS~~vy~~~~~~~~~~~e~~ 149 (485)
+.|++||+||.. ...++++..+++|+.++.++.+++... .-.++|++||...+.
T Consensus 74 ~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~iv~isS~~~~~------------- 140 (235)
T 3l6e_A 74 WGGLPELVLHCAGTGEFGPVGVYTAEQIRRVMESNLVSTILVAQQTVRLIGERGGVLANVLSSAAQV------------- 140 (235)
T ss_dssp HHCSCSEEEEECCCC------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEECCEECCS-------------
T ss_pred hcCCCcEEEECCCCCCCCChHhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCEEEEEeCHHhcC-------------
Confidence 589999999932 234467789999999999998887542 113999999976652
Q ss_pred CCCCCCCchHHHHHHHHHHHHHHHhC---CCCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCceeecccH
Q 047227 150 PYPPKHNDFYSATKAEGEALVIKANG---TNGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFTYV 226 (485)
Q Consensus 150 ~~~~~~~~~Y~~sK~~~E~~~~~~~~---~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v 226 (485)
+......|+.||...+.+.+.++. ..|+++.+++||.+-.+.... .. . .....+..+
T Consensus 141 --~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~----~~----~----------~~~~~~~~p 200 (235)
T 3l6e_A 141 --GKANESLYCASKWGMRGFLESLRAELKDSPLRLVNLYPSGIRSEFWDN----TD----H----------VDPSGFMTP 200 (235)
T ss_dssp --SCSSHHHHHHHHHHHHHHHHHHHHHTTTSSEEEEEEEEEEECCCC-----------------------------CBCH
T ss_pred --CCCCCcHHHHHHHHHHHHHHHHHHHhhccCCEEEEEeCCCccCcchhc----cC----C----------CCCcCCCCH
Confidence 123456899999999999988765 358999999999987653211 00 0 011257889
Q ss_pred HHHHHHHHHHHH
Q 047227 227 ANVAHAHICAER 238 (485)
Q Consensus 227 ~D~a~a~~~~~~ 238 (485)
+|+|++++.++.
T Consensus 201 edvA~~v~~l~~ 212 (235)
T 3l6e_A 201 EDAAAYMLDALE 212 (235)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHHHh
Confidence 999999998854
|
| >3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.7e-17 Score=162.73 Aligned_cols=217 Identities=16% Similarity=0.127 Sum_probs=152.9
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccch-hhhhhh-hcCCCeEEEEecCCCHHHHHHHhc
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQ-GILGEA-LRSGRAHYVSFDLRHKAQVLQALQ 82 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~-~~~~~~-~~~~~v~~~~~Dl~d~~~l~~~~~ 82 (485)
.+++++|||||+|.||.++++.|.++| ++|++++|............ ...... ....++.++.+|++|++++.++++
T Consensus 43 l~gk~vlVTGas~GIG~aia~~La~~G-a~Vvl~~r~~~~~~~l~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~ 121 (346)
T 3kvo_A 43 LAGCTVFITGASRGIGKAIALKAAKDG-ANIVIAAKTAQPHPKLLGTIYTAAEEIEAVGGKALPCIVDVRDEQQISAAVE 121 (346)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHTTT-CEEEEEESCCSCCSSSCCCHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHH
T ss_pred CCCCEEEEeCCChHHHHHHHHHHHHCC-CEEEEEECChhhhhhhHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHH
Confidence 457899999999999999999999999 69999998765322211110 001111 113578899999999998888775
Q ss_pred -------CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHHH----hcCCCEEEEecCccccccCCCCcCC
Q 047227 83 -------GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDACA----ELKVKRLIYTSSPSVVFDGVHGIIN 144 (485)
Q Consensus 83 -------~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~~----~~~v~r~V~~SS~~vy~~~~~~~~~ 144 (485)
++|+|||+||... ..++++..+++|+.++.++.+++. +.+..++|++||...+...
T Consensus 122 ~~~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~g~IV~iSS~~~~~~~------ 195 (346)
T 3kvo_A 122 KAIKKFGGIDILVNNASAISLTNTLDTPTKRLDLMMNVNTRGTYLASKACIPYLKKSKVAHILNISPPLNLNPV------ 195 (346)
T ss_dssp HHHHHHSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHTHHHHHHHHHHHHHHHTTCSSCEEEEECCCCCCCGG------
T ss_pred HHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCCEEEEECCHHHcCCC------
Confidence 6999999999321 234567789999999999999984 4456799999997765310
Q ss_pred CCCCCCCCCCCCchHHHHHHHHHHHHHHHhCC--CCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCceee
Q 047227 145 GNEALPYPPKHNDFYSATKAEGEALVIKANGT--NGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYD 222 (485)
Q Consensus 145 ~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~--~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~ 222 (485)
+..+...|+.+|...+.+.+.++.+ .++++.++.|+.+.... +.... .+. .....
T Consensus 196 -------~~~~~~~Y~aSKaal~~l~~~la~e~~~gIrvn~v~PG~~i~T~-------~~~~~-~~~--------~~~~r 252 (346)
T 3kvo_A 196 -------WFKQHCAYTIAKYGMSMYVLGMAEEFKGEIAVNALWPKTAIHTA-------AMDML-GGP--------GIESQ 252 (346)
T ss_dssp -------GTSSSHHHHHHHHHHHHHHHHHHHHTTTTCEEEEEECSBCBCCH-------HHHHH-CC----------CGGG
T ss_pred -------CCCCchHHHHHHHHHHHHHHHHHHHhcCCcEEEEEeCCCccccH-------HHHhh-ccc--------ccccc
Confidence 1235678999999999998877654 57999999999644331 22221 111 12334
Q ss_pred cccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeC
Q 047227 223 FTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTN 259 (485)
Q Consensus 223 ~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~ 259 (485)
+..++|+|++++.++.. ... ..|+.+ +.+
T Consensus 253 ~~~pedvA~~v~~L~s~-~~~------itG~~i-vdg 281 (346)
T 3kvo_A 253 CRKVDIIADAAYSIFQK-PKS------FTGNFV-IDE 281 (346)
T ss_dssp CBCTHHHHHHHHHHHTS-CTT------CCSCEE-EHH
T ss_pred CCCHHHHHHHHHHHHhc-CCC------CCceEE-ECC
Confidence 67899999999998763 222 566655 543
|
| >3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics, unknown function, oxidoreductase, PSI- 2; 2.40A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.76 E-value=4.1e-18 Score=160.68 Aligned_cols=204 Identities=20% Similarity=0.150 Sum_probs=131.4
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHH---HHh
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVL---QAL 81 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~---~~~ 81 (485)
.++|++|||||+|+||+++++.|.+ | +.|.+++|.... ........++.++.+|+.|.+... +.+
T Consensus 3 l~~k~vlITGas~gIG~~~a~~l~~-g-~~v~~~~r~~~~----------~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 70 (245)
T 3e9n_A 3 LKKKIAVVTGATGGMGIEIVKDLSR-D-HIVYALGRNPEH----------LAALAEIEGVEPIESDIVKEVLEEGGVDKL 70 (245)
T ss_dssp ---CEEEEESTTSHHHHHHHHHHTT-T-SEEEEEESCHHH----------HHHHHTSTTEEEEECCHHHHHHTSSSCGGG
T ss_pred CCCCEEEEEcCCCHHHHHHHHHHhC-C-CeEEEEeCCHHH----------HHHHHhhcCCcceecccchHHHHHHHHHHH
Confidence 3468999999999999999999987 7 589888886431 111122357899999998875421 122
Q ss_pred ---cCCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHHH----hcCCCEEEEecCccccccCCCCcCCCCC
Q 047227 82 ---QGAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDACA----ELKVKRLIYTSSPSVVFDGVHGIINGNE 147 (485)
Q Consensus 82 ---~~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~~----~~~v~r~V~~SS~~vy~~~~~~~~~~~e 147 (485)
.++|+|||+||... +.++++..+++|+.++.++.+++. +.+ .++|++||...+.
T Consensus 71 ~~~~~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~-g~iv~isS~~~~~----------- 138 (245)
T 3e9n_A 71 KNLDHVDTLVHAAAVARDTTIEAGSVAEWHAHLDLNVIVPAELSRQLLPALRAAS-GCVIYINSGAGNG----------- 138 (245)
T ss_dssp TTCSCCSEEEECC----------CHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEC-----------------
T ss_pred HhcCCCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcC-CeEEEEcCccccc-----------
Confidence 25899999999322 223456788999999888877764 334 6999999987764
Q ss_pred CCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCceeecc
Q 047227 148 ALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFT 224 (485)
Q Consensus 148 ~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i 224 (485)
+..+...|+.+|...|.+.+.++.+ .|+++.+++||.+.++......... +.......++
T Consensus 139 ----~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~-------------~~~~~~~~~~ 201 (245)
T 3e9n_A 139 ----PHPGNTIYAASKHALRGLADAFRKEEANNGIRVSTVSPGPTNTPMLQGLMDSQ-------------GTNFRPEIYI 201 (245)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCC-----------------------------CCGGGS
T ss_pred ----CCCCchHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCCccCchhhhhhhhh-------------hcccccccCC
Confidence 1235678999999999999887653 5899999999999887432211110 0111224588
Q ss_pred cHHHHHHHHHHHHHHhccccchhhccCCcEEEee
Q 047227 225 YVANVAHAHICAERALASEVTVAEKAAGQAYFVT 258 (485)
Q Consensus 225 ~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~ 258 (485)
+++|+|++++.+++. ...+.+||+.
T Consensus 202 ~p~dvA~~i~~l~~~---------~~~~~~~~i~ 226 (245)
T 3e9n_A 202 EPKEIANAIRFVIDA---------GETTQITNVD 226 (245)
T ss_dssp CHHHHHHHHHHHHTS---------CTTEEEEEEE
T ss_pred CHHHHHHHHHHHHcC---------CCccceeeeE
Confidence 999999999988752 1345677764
|
| >3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.76 E-value=1.3e-17 Score=157.36 Aligned_cols=210 Identities=15% Similarity=0.076 Sum_probs=149.1
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecC--CCHHHHHHHhc
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDL--RHKAQVLQALQ 82 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl--~d~~~l~~~~~ 82 (485)
.++|++|||||+|+||+++++.|+++| ++|.+++|..........+ +.. ....++.++.+|+ .|.+++.++++
T Consensus 12 l~~k~vlITGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~---~~~-~~~~~~~~~~~d~d~~~~~~~~~~~~ 86 (247)
T 3i1j_A 12 LKGRVILVTGAARGIGAAAARAYAAHG-ASVVLLGRTEASLAEVSDQ---IKS-AGQPQPLIIALNLENATAQQYRELAA 86 (247)
T ss_dssp TTTCEEEESSTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHH---HHH-TTSCCCEEEECCTTTCCHHHHHHHHH
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCC-CEEEEEecCHHHHHHHHHH---HHh-cCCCCceEEEeccccCCHHHHHHHHH
Confidence 457899999999999999999999999 6899998875421110000 111 1125677888887 88888777664
Q ss_pred -------CCCEEEEcCCCCC--------CCCchhhhHHHHHHHHHHHHHHH----HhcCCCEEEEecCccccccCCCCcC
Q 047227 83 -------GAEVVFHMAAPNS--------SINNHKLHHSVNVEGTKNVIDAC----AELKVKRLIYTSSPSVVFDGVHGII 143 (485)
Q Consensus 83 -------~~d~Vih~aa~~~--------~~~~~~~~~~~nv~~t~~ll~a~----~~~~v~r~V~~SS~~vy~~~~~~~~ 143 (485)
++|+|||+||... ..++++..+++|+.++.++.+++ ++.+..++|++||...+.
T Consensus 87 ~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~------- 159 (247)
T 3i1j_A 87 RVEHEFGRLDGLLHNASIIGPRTPLEQLPDEDFMQVMHVNVNATFMLTRALLPLLKRSEDASIAFTSSSVGRK------- 159 (247)
T ss_dssp HHHHHHSCCSEEEECCCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSEEEEEECCGGGTS-------
T ss_pred HHHHhCCCCCEEEECCccCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCeEEEEcchhhcC-------
Confidence 6899999999421 22456778999999999999998 445567999999976652
Q ss_pred CCCCCCCCCCCCCchHHHHHHHHHHHHHHHhCC----CCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCc
Q 047227 144 NGNEALPYPPKHNDFYSATKAEGEALVIKANGT----NGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNN 219 (485)
Q Consensus 144 ~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~----~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~ 219 (485)
+..+...|+.+|...+.+.+.++.+ .++++.+++||.+..+ +....... ..
T Consensus 160 --------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~~i~v~~v~PG~v~t~--------~~~~~~~~---------~~ 214 (247)
T 3i1j_A 160 --------GRANWGAYGVSKFATEGLMQTLADELEGVTAVRANSINPGATRTG--------MRAQAYPD---------EN 214 (247)
T ss_dssp --------CCTTCHHHHHHHHHHHHHHHHHHHHHTTTSSEEEEEEECCCCSSH--------HHHHHSTT---------SC
T ss_pred --------CCCCcchhHHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCcccCc--------cchhcccc---------cC
Confidence 1345678999999999998876643 5899999999988654 11111111 12
Q ss_pred eeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEe
Q 047227 220 VYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFV 257 (485)
Q Consensus 220 ~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv 257 (485)
...+...+|+|++++.++.... .-..|+.+++
T Consensus 215 ~~~~~~p~dva~~~~~l~s~~~------~~itG~~i~~ 246 (247)
T 3i1j_A 215 PLNNPAPEDIMPVYLYLMGPDS------TGINGQALNA 246 (247)
T ss_dssp GGGSCCGGGGTHHHHHHHSGGG------TTCCSCEEEC
T ss_pred ccCCCCHHHHHHHHHHHhCchh------ccccCeeecC
Confidence 2346678999999998865221 1256776654
|
| >1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ... | Back alignment and structure |
|---|
Probab=99.75 E-value=9.4e-18 Score=161.96 Aligned_cols=195 Identities=15% Similarity=0.070 Sum_probs=142.3
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhh--hcCCCeEEEEecCCCHHHHHHHhc
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEA--LRSGRAHYVSFDLRHKAQVLQALQ 82 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~Dl~d~~~l~~~~~ 82 (485)
..+|++|||||+|+||+++++.|+++| ++|++++|....... ..... ....++.++.+|++|.+++.++++
T Consensus 26 ~~~k~vlITGasggIG~~la~~l~~~G-~~V~~~~r~~~~~~~------~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~ 98 (286)
T 1xu9_A 26 LQGKKVIVTGASKGIGREMAYHLAKMG-AHVVVTARSKETLQK------VVSHCLELGAASAHYIAGTMEDMTFAEQFVA 98 (286)
T ss_dssp GTTCEEEESSCSSHHHHHHHHHHHHTT-CEEEEEESCHHHHHH------HHHHHHHHTCSEEEEEECCTTCHHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEECCHHHHHH------HHHHHHHhCCCceEEEeCCCCCHHHHHHHHH
Confidence 356899999999999999999999999 689999887532110 01111 112368899999999988887765
Q ss_pred -------CCCEEEEc-CCCCC------CCCchhhhHHHHHHHHHHHHHHHHhc---CCCEEEEecCccccccCCCCcCCC
Q 047227 83 -------GAEVVFHM-AAPNS------SINNHKLHHSVNVEGTKNVIDACAEL---KVKRLIYTSSPSVVFDGVHGIING 145 (485)
Q Consensus 83 -------~~d~Vih~-aa~~~------~~~~~~~~~~~nv~~t~~ll~a~~~~---~v~r~V~~SS~~vy~~~~~~~~~~ 145 (485)
++|+|||+ ++... +.++....+++|+.++.++.+++... +.+++|++||...+.
T Consensus 99 ~~~~~~g~iD~li~naag~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~--------- 169 (286)
T 1xu9_A 99 QAGKLMGGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQSNGSIVVVSSLAGKV--------- 169 (286)
T ss_dssp HHHHHHTSCSEEEECCCCCCCCCCCCSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEGGGTS---------
T ss_pred HHHHHcCCCCEEEECCccCCCCccccCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHCCCEEEEECCccccc---------
Confidence 69999999 45221 22345678999999999999887643 246999999987653
Q ss_pred CCCCCCCCCCCchHHHHHHHHHHHHHHHhC-----CCCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCce
Q 047227 146 NEALPYPPKHNDFYSATKAEGEALVIKANG-----TNGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNV 220 (485)
Q Consensus 146 ~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~-----~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~ 220 (485)
+..+...|+.||...|.+.+.++. ..++++++++||.+..+. ...... +...
T Consensus 170 ------~~~~~~~Y~asK~a~~~~~~~l~~e~~~~~~~i~v~~v~Pg~v~t~~--------~~~~~~---------~~~~ 226 (286)
T 1xu9_A 170 ------AYPMVAAYSASKFALDGFFSSIRKEYSVSRVNVSITLCVLGLIDTET--------AMKAVS---------GIVH 226 (286)
T ss_dssp ------CCTTCHHHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEEEECCBCCHH--------HHHHSC---------GGGG
T ss_pred ------CCCCccHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEeecCccCChh--------HHHhcc---------cccc
Confidence 123567899999999999887654 358999999999987542 111111 1122
Q ss_pred eecccHHHHHHHHHHHHH
Q 047227 221 YDFTYVANVAHAHICAER 238 (485)
Q Consensus 221 ~~~i~v~D~a~a~~~~~~ 238 (485)
...++++|+|++++.+++
T Consensus 227 ~~~~~~~~vA~~i~~~~~ 244 (286)
T 1xu9_A 227 MQAAPKEECALEIIKGGA 244 (286)
T ss_dssp GGCBCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHh
Confidence 457899999999998876
|
| >1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=3.1e-17 Score=155.51 Aligned_cols=215 Identities=13% Similarity=0.096 Sum_probs=146.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhh-hcCCCeEEEEecCCCHHHHHHH----h
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEA-LRSGRAHYVSFDLRHKAQVLQA----L 81 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~l~~~----~ 81 (485)
||++|||||+|+||+++++.|.++| ++|++++|..... +. .... ....++..+ |..+.+.+.+. +
T Consensus 1 Mk~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~----~~---~~~l~~~~~~~~~~--d~~~v~~~~~~~~~~~ 70 (254)
T 1zmt_A 1 MSTAIVTNVKHFGGMGSALRLSEAG-HTVACHDESFKQK----DE---LEAFAETYPQLKPM--SEQEPAELIEAVTSAY 70 (254)
T ss_dssp -CEEEESSTTSTTHHHHHHHHHHTT-CEEEECCGGGGSH----HH---HHHHHHHCTTSEEC--CCCSHHHHHHHHHHHH
T ss_pred CeEEEEeCCCchHHHHHHHHHHHCC-CEEEEEeCCHHHH----HH---HHHHHhcCCcEEEE--CHHHHHHHHHHHHHHh
Confidence 3689999999999999999999999 6899988864321 11 1110 012334443 66665443332 2
Q ss_pred cCCCEEEEcCCCC-C-------CCCchhhhHHHHHHHHHHHHHHHH----hcCCCEEEEecCccccccCCCCcCCCCCCC
Q 047227 82 QGAEVVFHMAAPN-S-------SINNHKLHHSVNVEGTKNVIDACA----ELKVKRLIYTSSPSVVFDGVHGIINGNEAL 149 (485)
Q Consensus 82 ~~~d~Vih~aa~~-~-------~~~~~~~~~~~nv~~t~~ll~a~~----~~~v~r~V~~SS~~vy~~~~~~~~~~~e~~ 149 (485)
.++|+|||+||.. . +.++++..+++|+.++.++.+++. +.+..++|++||...+.
T Consensus 71 g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~------------- 137 (254)
T 1zmt_A 71 GQVDVLVSNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKRKSGHIIFITSATPFG------------- 137 (254)
T ss_dssp SCCCEEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCSTTTS-------------
T ss_pred CCCCEEEECCCcCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECCccccc-------------
Confidence 3699999999943 2 223457789999999999988874 44567999999987653
Q ss_pred CCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCCh-HHH-------HHHHHcCCCeEEecCCC
Q 047227 150 PYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLLV-PSL-------VAAARAGKSKFIIGDGN 218 (485)
Q Consensus 150 ~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~~-~~~-------~~~~~~g~~~~~~g~g~ 218 (485)
+..+...|+.+|...+.+.+.++.+ .|+++++++||.++||....+. ..+ ........
T Consensus 138 --~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~~~~~~~~~~T~~~~~~~~~~~~~~~~~--------- 206 (254)
T 1zmt_A 138 --PWKELSTYTSARAGACTLANALSKELGEYNIPVFAIGPNYLHSEDSPYFYPTEPWKTNPEHVAHVKKVT--------- 206 (254)
T ss_dssp --CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCCEEEEEESSBCCBTCCSSCBHHHHTTCHHHHHHHHHHS---------
T ss_pred --CCCCchHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCccccccccccCCCcccccChHHHHHHhccC---------
Confidence 1234578999999999998877644 5899999999999888654321 111 11111111
Q ss_pred ceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCC
Q 047227 219 NVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNME 261 (485)
Q Consensus 219 ~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~ 261 (485)
....+.+++|+|++++.++.... ....|+.+++.++.
T Consensus 207 p~~~~~~p~dvA~~v~~l~s~~~------~~~tG~~~~vdgG~ 243 (254)
T 1zmt_A 207 ALQRLGTQKELGELVAFLASGSC------DYLTGQVFWLAGGF 243 (254)
T ss_dssp SSSSCBCHHHHHHHHHHHHTTSC------GGGTTCEEEESTTC
T ss_pred CCCCCcCHHHHHHHHHHHhCccc------CCccCCEEEECCCc
Confidence 11236789999999998865221 22678999998764
|
| >2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ... | Back alignment and structure |
|---|
Probab=99.75 E-value=5.1e-18 Score=162.35 Aligned_cols=222 Identities=9% Similarity=0.052 Sum_probs=154.2
Q ss_pred CCCCCCCCEEEEEcC--CCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHH
Q 047227 1 MSGEENERLCVVTGG--RGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVL 78 (485)
Q Consensus 1 M~~~~~~~~iLVtGg--tG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~ 78 (485)
|+...++|++||||| +|.||+++++.|.++| ++|.+++|...... ++ ....+ ..++.++.+|++|++++.
T Consensus 1 Mm~~l~~k~vlVTGa~~s~gIG~aia~~l~~~G-~~V~~~~r~~~~~~---~~---~~~~~-~~~~~~~~~Dv~~~~~v~ 72 (269)
T 2h7i_A 1 MTGLLDGKRILVSGIITDSSIAFHIARVAQEQG-AQLVLTGFDRLRLI---QR---ITDRL-PAKAPLLELDVQNEEHLA 72 (269)
T ss_dssp -CCTTTTCEEEECCCSSTTSHHHHHHHHHHHTT-CEEEEEECSCHHHH---HH---HHTTS-SSCCCEEECCTTCHHHHH
T ss_pred CccccCCCEEEEECCCCCCchHHHHHHHHHHCC-CEEEEEecChHHHH---HH---HHHhc-CCCceEEEccCCCHHHHH
Confidence 555667899999999 9999999999999999 68999988653110 00 11111 246789999999999888
Q ss_pred HHhc----------CCCEEEEcCCCCC------------CCCchhhhHHHHHHHHHHHHHHHHhcC--CCEEEEecCccc
Q 047227 79 QALQ----------GAEVVFHMAAPNS------------SINNHKLHHSVNVEGTKNVIDACAELK--VKRLIYTSSPSV 134 (485)
Q Consensus 79 ~~~~----------~~d~Vih~aa~~~------------~~~~~~~~~~~nv~~t~~ll~a~~~~~--v~r~V~~SS~~v 134 (485)
++++ ++|++||+||... ..++++..+++|+.++.++.+++...- -.++|++||...
T Consensus 73 ~~~~~~~~~~g~~~~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~iss~~~ 152 (269)
T 2h7i_A 73 SLAGRVTEAIGAGNKLDGVVHSIGFMPQTGMGINPFFDAPYADVSKGIHISAYSYASMAKALLPIMNPGGSIVGMDFDPS 152 (269)
T ss_dssp HHHHHHHHHHCTTCCEEEEEECCCCCCGGGSTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECCCS
T ss_pred HHHHHHHHHhCCCCCceEEEECCccCccccccccccccCCHHHHHHHHHHhhHHHHHHHHHHHHhhccCCeEEEEcCccc
Confidence 8775 7899999999432 223456688999999999999997641 248999998654
Q ss_pred cccCCCCcCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCC-----hHH------
Q 047227 135 VFDGVHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLL-----VPS------ 200 (485)
Q Consensus 135 y~~~~~~~~~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~-----~~~------ 200 (485)
++ ......|+.+|...+.+.+.++.+ .|+++.+++||.+..+..... -..
T Consensus 153 ~~----------------~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~ 216 (269)
T 2h7i_A 153 RA----------------MPAYNWMTVAKSALESVNRFVAREAGKYGVRSNLVAAGPIRTLAMSAIVGGALGEEAGAQIQ 216 (269)
T ss_dssp SC----------------CTTTHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCHHHHHHHTTTTCHHHHHHHH
T ss_pred cc----------------cCchHHHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCcccchhhhccccccchhhHHHHHH
Confidence 31 234578999999999998876643 589999999999865410000 000
Q ss_pred -HHHHHHcCCCeEEecCCCcee-ecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCC
Q 047227 201 -LVAAARAGKSKFIIGDGNNVY-DFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNME 261 (485)
Q Consensus 201 -~~~~~~~g~~~~~~g~g~~~~-~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~ 261 (485)
+........ ... .+..++|+|++++.++... ..-..|+.+++.++.
T Consensus 217 ~~~~~~~~~~---------p~~rr~~~p~dvA~~v~~L~s~~------~~~itG~~i~vdGG~ 264 (269)
T 2h7i_A 217 LLEEGWDQRA---------PIGWNMKDATPVAKTVCALLSDW------LPATTGDIIYADGGA 264 (269)
T ss_dssp HHHHHHHHHC---------TTCCCTTCCHHHHHHHHHHHSSS------CTTCCSEEEEESTTG
T ss_pred HHHHhhhccC---------CcccCCCCHHHHHHHHHHHhCch------hccCcceEEEecCCe
Confidence 011111111 111 3667899999999886421 122678888887763
|
| >3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=4.6e-18 Score=163.71 Aligned_cols=219 Identities=18% Similarity=0.140 Sum_probs=153.3
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc--
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ-- 82 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 82 (485)
.++|++|||||+|.||+++++.|.++| ++|.+++|....... +... ...++.++.+|++|.+++.++++
T Consensus 3 l~gk~~lVTGas~GIG~aia~~la~~G-~~V~~~~r~~~~~~~-------~~~~-~~~~~~~~~~Dv~~~~~v~~~~~~~ 73 (281)
T 3zv4_A 3 LTGEVALITGGASGLGRALVDRFVAEG-ARVAVLDKSAERLRE-------LEVA-HGGNAVGVVGDVRSLQDQKRAAERC 73 (281)
T ss_dssp TTTCEEEEETCSSHHHHHHHHHHHHTT-CEEEEEESCHHHHHH-------HHHH-TBTTEEEEECCTTCHHHHHHHHHHH
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCc-CEEEEEeCCHHHHHH-------HHHH-cCCcEEEEEcCCCCHHHHHHHHHHH
Confidence 457899999999999999999999999 699999886432110 1111 14578999999999988877764
Q ss_pred -----CCCEEEEcCCCCCC---C---------CchhhhHHHHHHHHHHHHHHHHhc---CCCEEEEecCccccccCCCCc
Q 047227 83 -----GAEVVFHMAAPNSS---I---------NNHKLHHSVNVEGTKNVIDACAEL---KVKRLIYTSSPSVVFDGVHGI 142 (485)
Q Consensus 83 -----~~d~Vih~aa~~~~---~---------~~~~~~~~~nv~~t~~ll~a~~~~---~v~r~V~~SS~~vy~~~~~~~ 142 (485)
+.|++||+||.... . ++++..+++|+.++.++.+++... .-.++|++||...+.
T Consensus 74 ~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~g~iv~isS~~~~~------ 147 (281)
T 3zv4_A 74 LAAFGKIDTLIPNAGIWDYSTALADLPEDKIDAAFDDIFHVNVKGYIHAVKACLPALVSSRGSVVFTISNAGFY------ 147 (281)
T ss_dssp HHHHSCCCEEECCCCCCCTTCCGGGSCTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCGGGTS------
T ss_pred HHhcCCCCEEEECCCcCccccccccCChhhhHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCeEEEEecchhcc------
Confidence 58999999994221 1 125667899999999999887543 125999999987652
Q ss_pred CCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhCCC--CceEEEEecCCcccCCCCCC---hH-------HHHHHHHcCCC
Q 047227 143 INGNEALPYPPKHNDFYSATKAEGEALVIKANGTN--GLLTCCIRPSSIFGPGDRLL---VP-------SLVAAARAGKS 210 (485)
Q Consensus 143 ~~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~--g~~~~ilRp~~v~Gp~~~~~---~~-------~~~~~~~~g~~ 210 (485)
+..+...|+.||+..+.+.+.++.+. ++++.+++||.+..+..... .. .+........
T Consensus 148 ---------~~~~~~~Y~asKaa~~~l~~~la~e~~~~Irvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 217 (281)
T 3zv4_A 148 ---------PNGGGPLYTATKHAVVGLVRQMAFELAPHVRVNGVAPGGMNTDLRGPSSLGLSEQSISSVPLADMLKSVL- 217 (281)
T ss_dssp ---------SSSSCHHHHHHHHHHHHHHHHHHHHHTTTSEEEEEEECSSCC--CCCTTCC--------CCHHHHHHHTC-
T ss_pred ---------CCCCCchhHHHHHHHHHHHHHHHHHhcCCCEEEEEECCcCcCCcccccccccccccccchhHHHHHHhcC-
Confidence 22345689999999999988876432 39999999999987632210 00 0111222221
Q ss_pred eEEecCCCceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCC
Q 047227 211 KFIIGDGNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNME 261 (485)
Q Consensus 211 ~~~~g~g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~ 261 (485)
....+..++|+|++++.++.. +. ..-..|+.+++.++.
T Consensus 218 --------p~~r~~~pedvA~~v~fL~s~--~~---~~~itG~~i~vdGG~ 255 (281)
T 3zv4_A 218 --------PIGRMPALEEYTGAYVFFATR--GD---SLPATGALLNYDGGM 255 (281)
T ss_dssp --------TTSSCCCGGGGSHHHHHHHST--TT---STTCSSCEEEESSSG
T ss_pred --------CCCCCCCHHHHHHHHHHhhcc--cc---cccccCcEEEECCCC
Confidence 223477899999999988641 11 122678999998874
|
| >4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.9e-17 Score=159.28 Aligned_cols=205 Identities=17% Similarity=0.123 Sum_probs=141.6
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc--
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ-- 82 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 82 (485)
.++|++|||||+|+||+++++.|.++| ++|.+++|..........+ +.. .....+.++.+|++|++++.++++
T Consensus 31 l~gk~~lVTGas~GIG~aia~~la~~G-~~V~~~~r~~~~~~~~~~~---~~~-~~~~~~~~~~~Dv~d~~~v~~~~~~~ 105 (281)
T 4dry_A 31 GEGRIALVTGGGTGVGRGIAQALSAEG-YSVVITGRRPDVLDAAAGE---IGG-RTGNIVRAVVCDVGDPDQVAALFAAV 105 (281)
T ss_dssp ---CEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHH---HHH-HHSSCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHH---HHh-cCCCeEEEEEcCCCCHHHHHHHHHHH
Confidence 357899999999999999999999999 6999999875421110000 111 112335899999999998887775
Q ss_pred -----CCCEEEEcCCCCC--------CCCchhhhHHHHHHHHHHHHHHHHh----cC--CCEEEEecCccccccCCCCcC
Q 047227 83 -----GAEVVFHMAAPNS--------SINNHKLHHSVNVEGTKNVIDACAE----LK--VKRLIYTSSPSVVFDGVHGII 143 (485)
Q Consensus 83 -----~~d~Vih~aa~~~--------~~~~~~~~~~~nv~~t~~ll~a~~~----~~--v~r~V~~SS~~vy~~~~~~~~ 143 (485)
+.|++||+||... +.++++..+++|+.++.++.+++.. .+ ..++|++||...+.
T Consensus 106 ~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~g~IV~isS~~~~~------- 178 (281)
T 4dry_A 106 RAEFARLDLLVNNAGSNVPPVPLEEVTFEQWNGIVAANLTGAFLCTQHAFRMMKAQTPRGGRIINNGSISAQT------- 178 (281)
T ss_dssp HHHHSCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSSCCEEEEEECCGGGTC-------
T ss_pred HHHcCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCcEEEEECCHHhCC-------
Confidence 5899999999421 2345667899999998888777654 32 45999999977652
Q ss_pred CCCCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCce
Q 047227 144 NGNEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNV 220 (485)
Q Consensus 144 ~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~ 220 (485)
+..+...|+.+|+..+.+.+.++.+ .|+++.+++||.+..+.... .... ..-.......
T Consensus 179 --------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~--------~~~~--~~~~~~~~~~ 240 (281)
T 4dry_A 179 --------PRPNSAPYTATKHAITGLTKSTALDGRMHDIACGQIDIGNAATDMTAR--------MSTG--VLQANGEVAA 240 (281)
T ss_dssp --------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEECBCC---------------CE--EECTTSCEEE
T ss_pred --------CCCCChhHHHHHHHHHHHHHHHHHHhcccCeEEEEEEECcCcChhhhh--------hcch--hhhhhhcccc
Confidence 2345678999999999998887643 68999999999998663211 1110 0000011122
Q ss_pred eecccHHHHHHHHHHHHHH
Q 047227 221 YDFTYVANVAHAHICAERA 239 (485)
Q Consensus 221 ~~~i~v~D~a~a~~~~~~~ 239 (485)
..++.++|+|++++.++..
T Consensus 241 ~~~~~pedvA~~v~fL~s~ 259 (281)
T 4dry_A 241 EPTIPIEHIAEAVVYMASL 259 (281)
T ss_dssp CCCBCHHHHHHHHHHHHHS
T ss_pred cCCCCHHHHHHHHHHHhCC
Confidence 3478999999999998763
|
| >3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.74 E-value=3e-17 Score=157.44 Aligned_cols=203 Identities=15% Similarity=0.130 Sum_probs=143.4
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhh--hcCCCeEEEEecCCCHHHHHHHhc
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEA--LRSGRAHYVSFDLRHKAQVLQALQ 82 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~Dl~d~~~l~~~~~ 82 (485)
.++|++|||||+|.||+++++.|.++| ++|.+++|.................. ....++.++.+|++|++++.++++
T Consensus 4 l~~k~~lVTGas~GIG~aia~~la~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~ 82 (274)
T 3e03_A 4 LSGKTLFITGASRGIGLAIALRAARDG-ANVAIAAKSAVANPKLPGTIHSAAAAVNAAGGQGLALKCDIREEDQVRAAVA 82 (274)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCCSCCTTSCCCHHHHHHHHHHHTSEEEEEECCTTCHHHHHHHHH
T ss_pred CCCcEEEEECCCChHHHHHHHHHHHCC-CEEEEEeccchhhhhhHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHH
Confidence 457899999999999999999999999 69999998765322221110001111 124578899999999998887765
Q ss_pred -------CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHHHh----cCCCEEEEecCccccccCCCCcCC
Q 047227 83 -------GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDACAE----LKVKRLIYTSSPSVVFDGVHGIIN 144 (485)
Q Consensus 83 -------~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~~~----~~v~r~V~~SS~~vy~~~~~~~~~ 144 (485)
+.|++||+||... ..++++..+++|+.++.++.+++.. .+..++|++||...+...
T Consensus 83 ~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~------ 156 (274)
T 3e03_A 83 ATVDTFGGIDILVNNASAIWLRGTLDTPMKRFDLMQQVNARGSFVCAQACLPHLLQAPNPHILTLAPPPSLNPA------ 156 (274)
T ss_dssp HHHHHHSCCCEEEECCCCCCCCCGGGSCHHHHHHHHHHTHHHHHHHHHHHHHHHTTSSSCEEEECCCCCCCCHH------
T ss_pred HHHHHcCCCCEEEECCCcccCCCcccCCHHHHHHHHhHhhHhHHHHHHHHHHHHHhcCCceEEEECChHhcCCC------
Confidence 5899999999321 2235567889999999999888754 456799999997665210
Q ss_pred CCCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCcee
Q 047227 145 GNEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVY 221 (485)
Q Consensus 145 ~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~~ 221 (485)
+..+...|+.||+..+.+.+.++.+ .|+++.+++||.+.... .. . ...+ ....
T Consensus 157 -------~~~~~~~Y~asKaal~~l~~~la~e~~~~gI~vn~v~PG~~v~T~---~~----~-~~~~---------~~~~ 212 (274)
T 3e03_A 157 -------WWGAHTGYTLAKMGMSLVTLGLAAEFGPQGVAINALWPRTVIATD---AI----N-MLPG---------VDAA 212 (274)
T ss_dssp -------HHHHCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEECSBCBCC---------------C---------CCGG
T ss_pred -------CCCCCchHHHHHHHHHHHHHHHHHHhhhcCEEEEEEECCcccccc---hh----h-hccc---------cccc
Confidence 0123567999999999998877643 58999999999544321 11 1 1111 1123
Q ss_pred ecccHHHHHHHHHHHHH
Q 047227 222 DFTYVANVAHAHICAER 238 (485)
Q Consensus 222 ~~i~v~D~a~a~~~~~~ 238 (485)
.+..++|+|++++.++.
T Consensus 213 ~~~~pedvA~~v~~l~s 229 (274)
T 3e03_A 213 ACRRPEIMADAAHAVLT 229 (274)
T ss_dssp GSBCTHHHHHHHHHHHT
T ss_pred ccCCHHHHHHHHHHHhC
Confidence 36789999999998865
|
| >1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=5.5e-18 Score=161.13 Aligned_cols=210 Identities=17% Similarity=0.125 Sum_probs=143.0
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHh---cCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHh
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIR---YDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQAL 81 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~---~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~ 81 (485)
.++|++|||||+|.||+++++.|.+ +| ++|.+++|..........+ +.......++.++.+|++|++++.+++
T Consensus 4 l~~k~~lVTGas~gIG~~ia~~l~~~~~~G-~~V~~~~r~~~~~~~~~~~---l~~~~~~~~~~~~~~Dv~~~~~v~~~~ 79 (259)
T 1oaa_A 4 LGCAVCVLTGASRGFGRALAPQLARLLSPG-SVMLVSARSESMLRQLKEE---LGAQQPDLKVVLAAADLGTEAGVQRLL 79 (259)
T ss_dssp CBSEEEEESSCSSHHHHHHHHHHHTTBCTT-CEEEEEESCHHHHHHHHHH---HHHHCTTSEEEEEECCTTSHHHHHHHH
T ss_pred CCCcEEEEeCCCChHHHHHHHHHHHhhcCC-CeEEEEeCCHHHHHHHHHH---HHhhCCCCeEEEEecCCCCHHHHHHHH
Confidence 4568999999999999999999999 89 6999998864321100000 111001346889999999998887765
Q ss_pred c---------CCC--EEEEcCCCCC----------CCCchhhhHHHHHHHHHHHHHHHHhc------CCCEEEEecCccc
Q 047227 82 Q---------GAE--VVFHMAAPNS----------SINNHKLHHSVNVEGTKNVIDACAEL------KVKRLIYTSSPSV 134 (485)
Q Consensus 82 ~---------~~d--~Vih~aa~~~----------~~~~~~~~~~~nv~~t~~ll~a~~~~------~v~r~V~~SS~~v 134 (485)
+ +.| ++||+||... +.++++..+++|+.++.++.+++... +..++|++||...
T Consensus 80 ~~~~~~~~~g~~d~~~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~g~iv~isS~~~ 159 (259)
T 1oaa_A 80 SAVRELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWALNLTSMLCLTSGTLNAFQDSPGLSKTVVNISSLCA 159 (259)
T ss_dssp HHHHHSCCCTTCCEEEEEECCCCCCCCSSCGGGCCCHHHHHHHHHHHTHHHHHHHHHHHHTSCCCTTCEEEEEEECCGGG
T ss_pred HHHHhccccccCCccEEEECCcccCCCCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCceEEEEcCchh
Confidence 3 358 9999999421 22456778999999999999998754 2357999999877
Q ss_pred cccCCCCcCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhCCC-CceEEEEecCCcccCCCCCChHHHHHHHHcCCC-eE
Q 047227 135 VFDGVHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANGTN-GLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKS-KF 212 (485)
Q Consensus 135 y~~~~~~~~~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~-g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~-~~ 212 (485)
+. +..+...|+.+|...+.+.+.++.+. ++++.+++||.+-.+. ...+.... .... ..
T Consensus 160 ~~---------------~~~~~~~Y~asKaa~~~~~~~la~e~~~i~vn~v~PG~v~T~~----~~~~~~~~-~~~~~~~ 219 (259)
T 1oaa_A 160 LQ---------------PYKGWGLYCAGKAARDMLYQVLAAEEPSVRVLSYAPGPLDNDM----QQLARETS-KDPELRS 219 (259)
T ss_dssp TS---------------CCTTCHHHHHHHHHHHHHHHHHHHHCTTEEEEEEECCSBSSHH----HHHHHHHC-SCHHHHH
T ss_pred cC---------------CCCCccHHHHHHHHHHHHHHHHHhhCCCceEEEecCCCcCcch----HHHHhhcc-CChhHHH
Confidence 62 12456789999999999999887554 4999999999875431 11111000 0000 00
Q ss_pred EecCCCceeecccHHHHHHHHHHHHH
Q 047227 213 IIGDGNNVYDFTYVANVAHAHICAER 238 (485)
Q Consensus 213 ~~g~g~~~~~~i~v~D~a~a~~~~~~ 238 (485)
.+.+......+..++|+|++++.++.
T Consensus 220 ~~~~~~p~~~~~~p~dvA~~v~~l~~ 245 (259)
T 1oaa_A 220 KLQKLKSDGALVDCGTSAQKLLGLLQ 245 (259)
T ss_dssp HHHHHHHTTCSBCHHHHHHHHHHHHH
T ss_pred HHHHhhhcCCcCCHHHHHHHHHHHHh
Confidence 00000012346789999999998876
|
| >2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase, oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora erythraea} SCOP: c.2.1.2 c.2.1.2 PDB: 2fr0_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=7.9e-17 Score=166.44 Aligned_cols=200 Identities=21% Similarity=0.168 Sum_probs=145.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhh--cCCCeEEEEecCCCHHHHHHHhcC
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEAL--RSGRAHYVSFDLRHKAQVLQALQG 83 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~Dl~d~~~l~~~~~~ 83 (485)
+++++|||||+|+||.+++++|.++|+.+|.+++|+....... .+ +...+ ...++.++.+|++|++++.+++++
T Consensus 225 ~~~~vLITGgtGgIG~~la~~La~~G~~~vvl~~R~~~~~~~~-~~---l~~~l~~~g~~v~~~~~Dv~d~~~v~~~~~~ 300 (486)
T 2fr1_A 225 PTGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDADGA-GE---LVAELEALGARTTVAACDVTDRESVRELLGG 300 (486)
T ss_dssp CCSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGGGSTTH-HH---HHHHHHHTTCEEEEEECCTTCHHHHHHHHHT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcCCCCCcHHH-HH---HHHHHHhcCCEEEEEEeCCCCHHHHHHHHHH
Confidence 4689999999999999999999999954688888875321110 01 11111 135789999999999999999876
Q ss_pred C------CEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCccccccCCCCcCCCCCCCC
Q 047227 84 A------EVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVVFDGVHGIINGNEALP 150 (485)
Q Consensus 84 ~------d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy~~~~~~~~~~~e~~~ 150 (485)
+ |+|||+||... +.++....+++|+.|+.++.+++++.+.++||++||.+.+..
T Consensus 301 i~~~g~ld~VIh~AG~~~~~~l~~~~~~~~~~~~~~nv~g~~~L~~~~~~~~~~~~V~~SS~a~~~g------------- 367 (486)
T 2fr1_A 301 IGDDVPLSAVFHAAATLDDGTVDTLTGERIERASRAKVLGARNLHELTRELDLTAFVLFSSFASAFG------------- 367 (486)
T ss_dssp SCTTSCEEEEEECCCCCCCCCGGGCCHHHHHHHTHHHHHHHHHHHHHHTTSCCSEEEEEEEHHHHTC-------------
T ss_pred HHhcCCCcEEEECCccCCCCccccCCHHHHHHHHHHHHHHHHHHHHHhCcCCCCEEEEEcChHhcCC-------------
Confidence 4 99999999432 223456678899999999999999988899999999766531
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHhCCCCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCceeecccHHHHH
Q 047227 151 YPPKHNDFYSATKAEGEALVIKANGTNGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVA 230 (485)
Q Consensus 151 ~~~~~~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~D~a 230 (485)
......|+.+|...+.+...+.. .|+++++++||.+.+++.. .... .. .. ......+++.+|++
T Consensus 368 --~~g~~~Yaaaka~l~~la~~~~~-~gi~v~~i~pG~~~~~gm~---~~~~----~~----~~--~~~g~~~i~~e~~a 431 (486)
T 2fr1_A 368 --APGLGGYAPGNAYLDGLAQQRRS-DGLPATAVAWGTWAGSGMA---EGPV----AD----RF--RRHGVIEMPPETAC 431 (486)
T ss_dssp --CTTCTTTHHHHHHHHHHHHHHHH-TTCCCEEEEECCBC-----------------------C--TTTTEECBCHHHHH
T ss_pred --CCCCHHHHHHHHHHHHHHHHHHh-cCCeEEEEECCeeCCCccc---chhH----HH----HH--HhcCCCCCCHHHHH
Confidence 23456899999999998877654 5999999999999876411 1000 00 00 01224689999999
Q ss_pred HHHHHHHH
Q 047227 231 HAHICAER 238 (485)
Q Consensus 231 ~a~~~~~~ 238 (485)
+++..+++
T Consensus 432 ~~l~~~l~ 439 (486)
T 2fr1_A 432 RALQNALD 439 (486)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99999876
|
| >4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1} | Back alignment and structure |
|---|
Probab=99.73 E-value=2.9e-16 Score=146.02 Aligned_cols=214 Identities=14% Similarity=0.068 Sum_probs=155.0
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc--
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ-- 82 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 82 (485)
.++|++|||||++-||+++++.|.++| .+|.+.+|....... ....++..+.+|++|++++.++++
T Consensus 9 f~GK~alVTGas~GIG~aia~~la~~G-a~Vv~~~~~~~~~~~-----------~~~~~~~~~~~Dv~~~~~v~~~~~~~ 76 (242)
T 4b79_A 9 YAGQQVLVTGGSSGIGAAIAMQFAELG-AEVVALGLDADGVHA-----------PRHPRIRREELDITDSQRLQRLFEAL 76 (242)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSTTSTTS-----------CCCTTEEEEECCTTCHHHHHHHHHHC
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHhh-----------hhcCCeEEEEecCCCHHHHHHHHHhc
Confidence 468999999999999999999999999 699999987542111 124578999999999999888875
Q ss_pred -CCCEEEEcCCCCC-----CCCchhhhHHHHHHHHHHHHHHHHhc---CCCEEEEecCccccccCCCCcCCCCCCCCCCC
Q 047227 83 -GAEVVFHMAAPNS-----SINNHKLHHSVNVEGTKNVIDACAEL---KVKRLIYTSSPSVVFDGVHGIINGNEALPYPP 153 (485)
Q Consensus 83 -~~d~Vih~aa~~~-----~~~~~~~~~~~nv~~t~~ll~a~~~~---~v~r~V~~SS~~vy~~~~~~~~~~~e~~~~~~ 153 (485)
+.|++||+||... +.++++..+++|+.++..+.+++... +-.++|.+||..... +.
T Consensus 77 g~iDiLVNNAGi~~~~~~~~~~~w~~~~~vNl~g~~~~~~~~~p~m~~~~G~IVnisS~~~~~---------------~~ 141 (242)
T 4b79_A 77 PRLDVLVNNAGISRDREEYDLATFERVLRLNLSAAMLASQLARPLLAQRGGSILNIASMYSTF---------------GS 141 (242)
T ss_dssp SCCSEEEECCCCCCGGGGGSHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCEEEEEECCGGGTS---------------CC
T ss_pred CCCCEEEECCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEeeccccC---------------CC
Confidence 4899999999322 33467789999999998887765432 125899999976542 12
Q ss_pred CCCchHHHHHHHHHHHHHHHhC---CCCceEEEEecCCcccCCCCCC--hHHHHHHHHcCCCeEEecCCCceeecccHHH
Q 047227 154 KHNDFYSATKAEGEALVIKANG---TNGLLTCCIRPSSIFGPGDRLL--VPSLVAAARAGKSKFIIGDGNNVYDFTYVAN 228 (485)
Q Consensus 154 ~~~~~Y~~sK~~~E~~~~~~~~---~~g~~~~ilRp~~v~Gp~~~~~--~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~D 228 (485)
.....|+.||.....+.+.++. .+|+++.++.||.+--|..... -+...+...+..|. .-+...+|
T Consensus 142 ~~~~~Y~asKaav~~ltr~lA~Ela~~gIrVNaV~PG~i~T~m~~~~~~~~~~~~~~~~~~Pl---------gR~g~pee 212 (242)
T 4b79_A 142 ADRPAYSASKGAIVQLTRSLACEYAAERIRVNAIAPGWIDTPLGAGLKADVEATRRIMQRTPL---------ARWGEAPE 212 (242)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCC-----CCCHHHHHHHHHTCTT---------CSCBCHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCCCCChhhhcccCCHHHHHHHHhcCCC---------CCCcCHHH
Confidence 3456899999999998887664 3689999999999976643211 12233334443332 23556899
Q ss_pred HHHHHHHHHHHhccccchhhccCCcEEEeeCC
Q 047227 229 VAHAHICAERALASEVTVAEKAAGQAYFVTNM 260 (485)
Q Consensus 229 ~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~ 260 (485)
+|.+++.++... ..-..|+.+.|.+|
T Consensus 213 iA~~v~fLaSd~------a~~iTG~~l~VDGG 238 (242)
T 4b79_A 213 VASAAAFLCGPG------ASFVTGAVLAVDGG 238 (242)
T ss_dssp HHHHHHHHTSGG------GTTCCSCEEEESTT
T ss_pred HHHHHHHHhCch------hcCccCceEEECcc
Confidence 999998875311 22267888888765
|
| >3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=2.1e-16 Score=147.98 Aligned_cols=208 Identities=14% Similarity=0.140 Sum_probs=151.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc----
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ---- 82 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~---- 82 (485)
+|+||||||++-||+++++.|.++| ++|.+.+|...... ......+++.++.+|++|++++.++++
T Consensus 2 nK~vlVTGas~GIG~aia~~la~~G-a~V~~~~~~~~~~~---------~~~~~~~~~~~~~~Dv~~~~~v~~~v~~~~~ 71 (247)
T 3ged_A 2 NRGVIVTGGGHGIGKQICLDFLEAG-DKVCFIDIDEKRSA---------DFAKERPNLFYFHGDVADPLTLKKFVEYAME 71 (247)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHH---------HHHTTCTTEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHH---------HHHHhcCCEEEEEecCCCHHHHHHHHHHHHH
Confidence 3799999999999999999999999 79999998743211 111124578899999999998887764
Q ss_pred ---CCCEEEEcCCCC-------CCCCchhhhHHHHHHHHHHHHHHHHhc---CCCEEEEecCccccccCCCCcCCCCCCC
Q 047227 83 ---GAEVVFHMAAPN-------SSINNHKLHHSVNVEGTKNVIDACAEL---KVKRLIYTSSPSVVFDGVHGIINGNEAL 149 (485)
Q Consensus 83 ---~~d~Vih~aa~~-------~~~~~~~~~~~~nv~~t~~ll~a~~~~---~v~r~V~~SS~~vy~~~~~~~~~~~e~~ 149 (485)
+.|++||+||.. .+.++++..+++|+.++..+.+++... +-.++|++||...+.
T Consensus 72 ~~g~iDiLVNNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~~G~IInisS~~~~~------------- 138 (247)
T 3ged_A 72 KLQRIDVLVNNACRGSKGILSSLLYEEFDYILSVGLKAPYELSRLCRDELIKNKGRIINIASTRAFQ------------- 138 (247)
T ss_dssp HHSCCCEEEECCCCCCCCGGGTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEECCGGGTS-------------
T ss_pred HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCcEEEEeeccccc-------------
Confidence 489999999922 234567889999999998887776532 226999999976642
Q ss_pred CCCCCCCchHHHHHHHHHHHHHHHhCC--CCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCceeecccHH
Q 047227 150 PYPPKHNDFYSATKAEGEALVIKANGT--NGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVA 227 (485)
Q Consensus 150 ~~~~~~~~~Y~~sK~~~E~~~~~~~~~--~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~ 227 (485)
+......|+.||...+.+.+.++.+ .++++.++.||.+--+.......... +..| ..-+...+
T Consensus 139 --~~~~~~~Y~asKaal~~ltk~lA~ela~~IrVN~I~PG~i~t~~~~~~~~~~~----~~~P---------l~R~g~pe 203 (247)
T 3ged_A 139 --SEPDSEAYASAKGGIVALTHALAMSLGPDVLVNCIAPGWINVTEQQEFTQEDC----AAIP---------AGKVGTPK 203 (247)
T ss_dssp --CCTTCHHHHHHHHHHHHHHHHHHHHHTTTSEEEEEEECSBCCCC---CCHHHH----HTST---------TSSCBCHH
T ss_pred --CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEecCcCCCCCcHHHHHHHH----hcCC---------CCCCcCHH
Confidence 1234568999999998887766532 27999999999987665443333332 2211 12355689
Q ss_pred HHHHHHHHHHHHhccccchhhccCCcEEEeeCC
Q 047227 228 NVAHAHICAERALASEVTVAEKAAGQAYFVTNM 260 (485)
Q Consensus 228 D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~ 260 (485)
|+|.+++.++. ..-..|+.+.|.+|
T Consensus 204 diA~~v~fL~s--------~~~iTG~~i~VDGG 228 (247)
T 3ged_A 204 DISNMVLFLCQ--------QDFITGETIIVDGG 228 (247)
T ss_dssp HHHHHHHHHHH--------CSSCCSCEEEESTT
T ss_pred HHHHHHHHHHh--------CCCCCCCeEEECcC
Confidence 99999998875 22378999999876
|
| >2z5l_A Tylkr1, tylactone synthase starter module and modules 1 & 2; short-chain dehydrogenase/reductase, rossman fold; 1.95A {Streptomyces fradiae} | Back alignment and structure |
|---|
Probab=99.72 E-value=4.2e-16 Score=161.64 Aligned_cols=200 Identities=17% Similarity=0.141 Sum_probs=146.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhc--CCCeEEEEecCCCHHHHHHHhcC
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALR--SGRAHYVSFDLRHKAQVLQALQG 83 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~Dl~d~~~l~~~~~~ 83 (485)
++++||||||+|+||.+++++|.++|+.+|.+++|+....... .+ +...+. ..++.++.+|++|++++.+++++
T Consensus 258 ~~~~vLITGgtGgIG~~lA~~La~~G~~~vvl~~R~~~~~~~~-~~---l~~~l~~~g~~v~~~~~Dvtd~~~v~~~~~~ 333 (511)
T 2z5l_A 258 PSGTVLITGGMGAIGRRLARRLAAEGAERLVLTSRRGPEAPGA-AE---LAEELRGHGCEVVHAACDVAERDALAALVTA 333 (511)
T ss_dssp CCSEEEEETTTSHHHHHHHHHHHHTTCSEEEEEESSGGGSTTH-HH---HHHHHHTTTCEEEEEECCSSCHHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCcEEEEEecCCcccHHH-HH---HHHHHHhcCCEEEEEEeCCCCHHHHHHHHhc
Confidence 4689999999999999999999999954688888865321110 11 111122 34688999999999999999975
Q ss_pred --CCEEEEcCCCCCC-------CCchhhhHHHHHHHHHHHHHHHHhc-CCCEEEEecCccccccCCCCcCCCCCCCCCCC
Q 047227 84 --AEVVFHMAAPNSS-------INNHKLHHSVNVEGTKNVIDACAEL-KVKRLIYTSSPSVVFDGVHGIINGNEALPYPP 153 (485)
Q Consensus 84 --~d~Vih~aa~~~~-------~~~~~~~~~~nv~~t~~ll~a~~~~-~v~r~V~~SS~~vy~~~~~~~~~~~e~~~~~~ 153 (485)
.|+|||+||.... .++....+++|+.|+.++.+++... +.++||++||...+.. .
T Consensus 334 ~~ld~VVh~AGv~~~~~~~~~~~~~~~~~~~~nv~g~~~L~~~~~~~~~~~~~V~~SS~a~~~g---------------~ 398 (511)
T 2z5l_A 334 YPPNAVFHTAGILDDAVIDTLSPESFETVRGAKVCGAELLHQLTADIKGLDAFVLFSSVTGTWG---------------N 398 (511)
T ss_dssp SCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHHHHHHHHHHHTSSCTTCCCEEEEEEGGGTTC---------------C
T ss_pred CCCcEEEECCcccCCcccccCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCEEEEEeCHHhcCC---------------C
Confidence 9999999994332 2345667899999999999999887 7889999999755421 2
Q ss_pred CCCchHHHHHHHHHHHHHHHhCCCCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCceeecccHHHHHHHH
Q 047227 154 KHNDFYSATKAEGEALVIKANGTNGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAH 233 (485)
Q Consensus 154 ~~~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~D~a~a~ 233 (485)
.....|+.+|...|.+.+.+. ..|+++++++||.+-+.+...... ...... .....++.+|+++++
T Consensus 399 ~g~~~YaaaKa~ld~la~~~~-~~gi~v~sv~pG~~~~tgm~~~~~--~~~~~~-----------~g~~~l~~e~~a~~l 464 (511)
T 2z5l_A 399 AGQGAYAAANAALDALAERRR-AAGLPATSVAWGLWGGGGMAAGAG--EESLSR-----------RGLRAMDPDAAVDAL 464 (511)
T ss_dssp TTBHHHHHHHHHHHHHHHHHH-TTTCCCEEEEECCBCSTTCCCCHH--HHHHHH-----------HTBCCBCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHH-HcCCcEEEEECCcccCCccccccc--HHHHHh-----------cCCCCCCHHHHHHHH
Confidence 345789999999999998775 469999999999884332221111 111111 113468899999999
Q ss_pred HHHHH
Q 047227 234 ICAER 238 (485)
Q Consensus 234 ~~~~~ 238 (485)
..++.
T Consensus 465 ~~al~ 469 (511)
T 2z5l_A 465 LGAMG 469 (511)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 99876
|
| >3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein; structural genomics, ssgcid; 1.70A {Mycobacterium smegmatis} PDB: 3lls_A 3v1t_C 3v1u_A* 4fw8_A* 3q6i_A* 3m1l_A | Back alignment and structure |
|---|
Probab=99.72 E-value=1.1e-16 Score=163.95 Aligned_cols=217 Identities=16% Similarity=0.136 Sum_probs=152.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc---
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ--- 82 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 82 (485)
+++++|||||+|.||.+++++|.++| .+|.+++|.... +. +.......+++++.+|++|.+++.++++
T Consensus 212 ~gk~~LVTGgsgGIG~aiA~~La~~G-a~Vvl~~r~~~~-----~~---l~~~~~~~~~~~~~~Dvtd~~~v~~~~~~~~ 282 (454)
T 3u0b_A 212 DGKVAVVTGAARGIGATIAEVFARDG-ATVVAIDVDGAA-----ED---LKRVADKVGGTALTLDVTADDAVDKITAHVT 282 (454)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHTT-CEEEEEECGGGH-----HH---HHHHHHHHTCEEEECCTTSTTHHHHHHHHHH
T ss_pred CCCEEEEeCCchHHHHHHHHHHHHCC-CEEEEEeCCccH-----HH---HHHHHHHcCCeEEEEecCCHHHHHHHHHHHH
Confidence 57899999999999999999999999 589888875321 11 1222222357899999999988877764
Q ss_pred ----C-CCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHHHhc----CCCEEEEecCccccccCCCCcCCCC
Q 047227 83 ----G-AEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDACAEL----KVKRLIYTSSPSVVFDGVHGIINGN 146 (485)
Q Consensus 83 ----~-~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~~~~----~v~r~V~~SS~~vy~~~~~~~~~~~ 146 (485)
+ .|+|||+|+... +.++++..+++|+.++.++.+++... +..+||++||...+..
T Consensus 283 ~~~g~~id~lV~nAGv~~~~~~~~~~~~~~~~~~~~nv~g~~~l~~~~~~~~~~~~~g~iV~iSS~a~~~g--------- 353 (454)
T 3u0b_A 283 EHHGGKVDILVNNAGITRDKLLANMDEKRWDAVIAVNLLAPQRLTEGLVGNGTIGEGGRVIGLSSMAGIAG--------- 353 (454)
T ss_dssp HHSTTCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHTTSSCTTCEEEEECCHHHHHC---------
T ss_pred HHcCCCceEEEECCcccCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCEEEEEeChHhCCC---------
Confidence 3 899999999432 23456678999999999999999876 5679999999876631
Q ss_pred CCCCCCCCCCchHHHHHHHHHHHHHHHhC---CCCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCceeec
Q 047227 147 EALPYPPKHNDFYSATKAEGEALVIKANG---TNGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDF 223 (485)
Q Consensus 147 e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~---~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~ 223 (485)
......|+.+|...+.+.+.++. ..|+++.+++||.+..+................ .....+
T Consensus 354 ------~~g~~~YaasKaal~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~---------~~l~r~ 418 (454)
T 3u0b_A 354 ------NRGQTNYATTKAGMIGLAEALAPVLADKGITINAVAPGFIETKMTEAIPLATREVGRRL---------NSLFQG 418 (454)
T ss_dssp ------CTTCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECSBCC----------CHHHHHS---------BTTSSC
T ss_pred ------CCCCHHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEcCcccChhhhhcchhhHHHHHhh---------ccccCC
Confidence 23567899999977777766553 468999999999998764321111000111111 112235
Q ss_pred ccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCC
Q 047227 224 TYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNME 261 (485)
Q Consensus 224 i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~ 261 (485)
...+|+|+++..++.... .-..|+.+++.++.
T Consensus 419 g~pedvA~~v~fL~s~~a------~~itG~~i~vdGG~ 450 (454)
T 3u0b_A 419 GQPVDVAELIAYFASPAS------NAVTGNTIRVCGQA 450 (454)
T ss_dssp BCHHHHHHHHHHHHCGGG------TTCCSCEEEESSSB
T ss_pred CCHHHHHHHHHHHhCCcc------CCCCCcEEEECCcc
Confidence 678999999998865222 23678999998764
|
| >4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=99.72 E-value=2.1e-16 Score=150.10 Aligned_cols=221 Identities=17% Similarity=0.113 Sum_probs=155.8
Q ss_pred CCCCCCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHH
Q 047227 1 MSGEENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQA 80 (485)
Q Consensus 1 M~~~~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~ 80 (485)
|+...++|.+|||||++-||+++++.|.++| .+|.+.+|...... + ....+ ..++..+.+|++|++++.++
T Consensus 23 Ms~rL~gKvalVTGas~GIG~aiA~~la~~G-a~V~i~~r~~~~l~----~---~~~~~-g~~~~~~~~Dv~~~~~v~~~ 93 (273)
T 4fgs_A 23 MTQRLNAKIAVITGATSGIGLAAAKRFVAEG-ARVFITGRRKDVLD----A---AIAEI-GGGAVGIQADSANLAELDRL 93 (273)
T ss_dssp --CTTTTCEEEEESCSSHHHHHHHHHHHHTT-CEEEEEESCHHHHH----H---HHHHH-CTTCEEEECCTTCHHHHHHH
T ss_pred hcchhCCCEEEEeCcCCHHHHHHHHHHHHCC-CEEEEEECCHHHHH----H---HHHHc-CCCeEEEEecCCCHHHHHHH
Confidence 6666788999999999999999999999999 69999998753211 0 11111 45788999999999988877
Q ss_pred hc-------CCCEEEEcCCC-------CCCCCchhhhHHHHHHHHHHHHHHHHhc--CCCEEEEecCccccccCCCCcCC
Q 047227 81 LQ-------GAEVVFHMAAP-------NSSINNHKLHHSVNVEGTKNVIDACAEL--KVKRLIYTSSPSVVFDGVHGIIN 144 (485)
Q Consensus 81 ~~-------~~d~Vih~aa~-------~~~~~~~~~~~~~nv~~t~~ll~a~~~~--~v~r~V~~SS~~vy~~~~~~~~~ 144 (485)
++ +.|++||+||. ..+.++++..+++|+.++..+.+++... .-.++|++||.....
T Consensus 94 ~~~~~~~~G~iDiLVNNAG~~~~~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~~G~IInisS~~~~~-------- 165 (273)
T 4fgs_A 94 YEKVKAEAGRIDVLFVNAGGGSMLPLGEVTEEQYDDTFDRNVKGVLFTVQKALPLLARGSSVVLTGSTAGST-------- 165 (273)
T ss_dssp HHHHHHHHSCEEEEEECCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEECCGGGGS--------
T ss_pred HHHHHHHcCCCCEEEECCCCCCCCChhhccHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCeEEEEeehhhcc--------
Confidence 64 48999999992 1234577889999999999998887654 124799999976542
Q ss_pred CCCCCCCCCCCCchHHHHHHHHHHHHHHHhC---CCCceEEEEecCCcccCCCCCCh-------HHHHHHHHcCCCeEEe
Q 047227 145 GNEALPYPPKHNDFYSATKAEGEALVIKANG---TNGLLTCCIRPSSIFGPGDRLLV-------PSLVAAARAGKSKFII 214 (485)
Q Consensus 145 ~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~---~~g~~~~ilRp~~v~Gp~~~~~~-------~~~~~~~~~g~~~~~~ 214 (485)
+......|+.+|.....+.+.++. .+|+++.++.||.+--|...... ..+.....+..|.
T Consensus 166 -------~~~~~~~Y~asKaav~~ltr~lA~Ela~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~Pl--- 235 (273)
T 4fgs_A 166 -------GTPAFSVYAASKAALRSFARNWILDLKDRGIRINTLSPGPTETTGLVELAGKDPVQQQGLLNALAAQVPM--- 235 (273)
T ss_dssp -------CCTTCHHHHHHHHHHHHHHHHHHHHTTTSCEEEEEEEECSBCC---------CHHHHHHHHHHHHHHSTT---
T ss_pred -------CCCCchHHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCCCChhHHHhhccCchhhHHHHHHHHhcCCC---
Confidence 123456899999999998887664 46899999999998766422111 1223333333221
Q ss_pred cCCCceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCC
Q 047227 215 GDGNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNM 260 (485)
Q Consensus 215 g~g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~ 260 (485)
.-+...+|+|.+++.++... ..-..|+.+.|.+|
T Consensus 236 ------gR~g~peeiA~~v~FLaSd~------a~~iTG~~i~VDGG 269 (273)
T 4fgs_A 236 ------GRVGRAEEVAAAALFLASDD------SSFVTGAELFVDGG 269 (273)
T ss_dssp ------SSCBCHHHHHHHHHHHHSGG------GTTCCSCEEEESTT
T ss_pred ------CCCcCHHHHHHHHHHHhCch------hcCccCCeEeECcC
Confidence 12556899999999875421 22267899888765
|
| >4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=99.70 E-value=8.8e-17 Score=151.24 Aligned_cols=223 Identities=16% Similarity=0.149 Sum_probs=155.6
Q ss_pred CCC--CCCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhh-cCCCeEEEEecCCCHHHH
Q 047227 1 MSG--EENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEAL-RSGRAHYVSFDLRHKAQV 77 (485)
Q Consensus 1 M~~--~~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l 77 (485)
|+. +.++|++|||||++-||+++++.|.++| .+|.+.+|........ ..... ...++..+.+|++|++++
T Consensus 1 Ms~~f~L~gKvalVTGas~GIG~aia~~la~~G-a~Vvi~~~~~~~~~~~------~~~l~~~g~~~~~~~~Dv~~~~~v 73 (255)
T 4g81_D 1 MTALFDLTGKTALVTGSARGLGFAYAEGLAAAG-ARVILNDIRATLLAES------VDTLTRKGYDAHGVAFDVTDELAI 73 (255)
T ss_dssp --CTTCCTTCEEEETTCSSHHHHHHHHHHHHTT-CEEEECCSCHHHHHHH------HHHHHHTTCCEEECCCCTTCHHHH
T ss_pred CCCCcCCCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEECCHHHHHHH------HHHHHhcCCcEEEEEeeCCCHHHH
Confidence 665 4578999999999999999999999999 6999998864321110 11111 235788999999999988
Q ss_pred HHHhc-------CCCEEEEcCCCC-------CCCCchhhhHHHHHHHHHHHHHHHHh-----cCCCEEEEecCccccccC
Q 047227 78 LQALQ-------GAEVVFHMAAPN-------SSINNHKLHHSVNVEGTKNVIDACAE-----LKVKRLIYTSSPSVVFDG 138 (485)
Q Consensus 78 ~~~~~-------~~d~Vih~aa~~-------~~~~~~~~~~~~nv~~t~~ll~a~~~-----~~v~r~V~~SS~~vy~~~ 138 (485)
.++++ +.|++||+||.. .+.++++..+++|+.++..+.+++.. .+-.++|++||.....
T Consensus 74 ~~~~~~~~~~~G~iDiLVNNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~~G~IVnisS~~~~~-- 151 (255)
T 4g81_D 74 EAAFSKLDAEGIHVDILINNAGIQYRKPMVELELENWQKVIDTNLTSAFLVSRSAAKRMIARNSGGKIINIGSLTSQA-- 151 (255)
T ss_dssp HHHHHHHHHTTCCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTS--
T ss_pred HHHHHHHHHHCCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHccCCCEEEEEeehhhcC--
Confidence 87764 489999999922 23457788999999999888776532 2346999999976642
Q ss_pred CCCcCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhC---CCCceEEEEecCCcccCCCCCCh--HHHHHHHHcCCCeEE
Q 047227 139 VHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANG---TNGLLTCCIRPSSIFGPGDRLLV--PSLVAAARAGKSKFI 213 (485)
Q Consensus 139 ~~~~~~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~---~~g~~~~ilRp~~v~Gp~~~~~~--~~~~~~~~~g~~~~~ 213 (485)
+......|+.+|...+.+.+.++. .+|+++.++.||.+..|...... +.+...+.+..|.
T Consensus 152 -------------~~~~~~~Y~asKaal~~ltr~lA~ela~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~Pl-- 216 (255)
T 4g81_D 152 -------------ARPTVAPYTAAKGGIKMLTCSMAAEWAQFNIQTNAIGPGYILTDMNTALIEDKQFDSWVKSSTPS-- 216 (255)
T ss_dssp -------------BCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCGGGHHHHTCHHHHHHHHHHSTT--
T ss_pred -------------CCCCchhHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCCCCchhhcccCCHHHHHHHHhCCCC--
Confidence 123456899999999998887664 36899999999999765321110 1222222322222
Q ss_pred ecCCCceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCC
Q 047227 214 IGDGNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNM 260 (485)
Q Consensus 214 ~g~g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~ 260 (485)
.-+...+|+|.+++.++... ..-..|+.+.|.+|
T Consensus 217 -------~R~g~pediA~~v~fL~S~~------a~~iTG~~i~VDGG 250 (255)
T 4g81_D 217 -------QRWGRPEELIGTAIFLSSKA------SDYINGQIIYVDGG 250 (255)
T ss_dssp -------CSCBCGGGGHHHHHHHHSGG------GTTCCSCEEEESTT
T ss_pred -------CCCcCHHHHHHHHHHHhCch------hCCCcCCEEEECCC
Confidence 22456899999998875421 22367889988765
|
| >1jtv_A 17 beta-hydroxysteroid dehydrogenase type 1; steroid hormones, alternative binding mode, oxidoreductase; HET: TES; 1.54A {Homo sapiens} SCOP: c.2.1.2 PDB: 1dht_A* 1equ_A* 1bhs_A* 1i5r_A* 1qyv_A* 1qyw_A* 1qyx_A* 3dey_X* 3dhe_A* 3hb4_X* 3hb5_X* 3klp_X* 3km0_A* 1iol_A* 1fds_A* 1fdt_A* 3klm_X* 1fdw_A* 1fdu_A* 1fdv_A* ... | Back alignment and structure |
|---|
Probab=99.70 E-value=8.6e-17 Score=158.12 Aligned_cols=168 Identities=18% Similarity=0.102 Sum_probs=126.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhh----hcCCCeEEEEecCCCHHHHHHHhc
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEA----LRSGRAHYVSFDLRHKAQVLQALQ 82 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~----~~~~~v~~~~~Dl~d~~~l~~~~~ 82 (485)
+++||||||+|+||+++++.|.++| ++|.+++|.......... ..... ....++.++.+|++|.+++.++++
T Consensus 2 ~k~vlVTGas~GIG~ala~~L~~~G-~~v~~v~r~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~ 77 (327)
T 1jtv_A 2 RTVVLITGCSSGIGLHLAVRLASDP-SQSFKVYATLRDLKTQGR---LWEAARALACPPGSLETLQLDVRDSKSVAAARE 77 (327)
T ss_dssp CEEEEESCCSSHHHHHHHHHHHTCT-TCCEEEEEEESCGGGTHH---HHHHHHHTTCCTTSEEEEECCTTCHHHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCC-CceEEEEeecCcHHHHHH---HHHHhhhccCCCCceEEEEecCCCHHHHHHHHH
Confidence 5789999999999999999999999 577777664331111100 11111 012578999999999999999886
Q ss_pred C-----CCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHH----HhcCCCEEEEecCccccccCCCCcCCCC
Q 047227 83 G-----AEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDAC----AELKVKRLIYTSSPSVVFDGVHGIINGN 146 (485)
Q Consensus 83 ~-----~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~----~~~~v~r~V~~SS~~vy~~~~~~~~~~~ 146 (485)
. .|+|||+||... ..++++..+++|+.++.++++++ ++.+.+++|++||...+.
T Consensus 78 ~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~~~g~IV~isS~~~~~---------- 147 (327)
T 1jtv_A 78 RVTEGRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRGSGRVLVTGSVGGLM---------- 147 (327)
T ss_dssp TCTTSCCSEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEEGGGTS----------
T ss_pred HHhcCCCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEECCccccc----------
Confidence 4 899999999321 22356778999999999999985 445678999999987652
Q ss_pred CCCCCCCCCCchHHHHHHHHHHHHHHHhC---CCCceEEEEecCCcccCC
Q 047227 147 EALPYPPKHNDFYSATKAEGEALVIKANG---TNGLLTCCIRPSSIFGPG 193 (485)
Q Consensus 147 e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~---~~g~~~~ilRp~~v~Gp~ 193 (485)
+......|+.||...|.+.+.++. .+|+++++++||.+..+.
T Consensus 148 -----~~~~~~~Y~aSK~a~~~~~~~la~el~~~gI~v~~v~PG~v~T~~ 192 (327)
T 1jtv_A 148 -----GLPFNDVYCASKFALEGLCESLAVLLLPFGVHLSLIECGPVHTAF 192 (327)
T ss_dssp -----CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCC--
T ss_pred -----CCCCChHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEeCcccChH
Confidence 123456899999999999988765 368999999999998764
|
| >3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.70 E-value=1.1e-16 Score=155.94 Aligned_cols=202 Identities=15% Similarity=0.079 Sum_probs=139.4
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhh--cCCCeEEEEecCCCH-HHHHHHh
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEAL--RSGRAHYVSFDLRHK-AQVLQAL 81 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~Dl~d~-~~l~~~~ 81 (485)
.+++++|||||+|+||+++++.|+++| ++|++++|........ ..... ...++.++.+|++|. +++.+++
T Consensus 10 ~~~k~vlITGas~GIG~~~a~~L~~~G-~~V~~~~r~~~~~~~~------~~~l~~~~~~~~~~~~~Dl~~~~~~v~~~~ 82 (311)
T 3o26_A 10 TKRRCAVVTGGNKGIGFEICKQLSSNG-IMVVLTCRDVTKGHEA------VEKLKNSNHENVVFHQLDVTDPIATMSSLA 82 (311)
T ss_dssp --CCEEEESSCSSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHH------HHHHHTTTCCSEEEEECCTTSCHHHHHHHH
T ss_pred CCCcEEEEecCCchHHHHHHHHHHHCC-CEEEEEeCCHHHHHHH------HHHHHhcCCCceEEEEccCCCcHHHHHHHH
Confidence 346799999999999999999999999 6999999875421110 11111 124789999999997 7666655
Q ss_pred c-------CCCEEEEcCCCCC-------------------------------------CCCchhhhHHHHHHHHHHHHHH
Q 047227 82 Q-------GAEVVFHMAAPNS-------------------------------------SINNHKLHHSVNVEGTKNVIDA 117 (485)
Q Consensus 82 ~-------~~d~Vih~aa~~~-------------------------------------~~~~~~~~~~~nv~~t~~ll~a 117 (485)
+ ++|+|||+||... ..++++..+++|+.|+.++.++
T Consensus 83 ~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~ 162 (311)
T 3o26_A 83 DFIKTHFGKLDILVNNAGVAGFSVDADRFKAMISDIGEDSEELVKIYEKPEAQELMSETYELAEECLKINYNGVKSVTEV 162 (311)
T ss_dssp HHHHHHHSSCCEEEECCCCCSCEECHHHHHHHHHHHCSSTTHHHHHTTSHHHHTTEECCHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHhCCCCCEEEECCcccccccccchhhhcccccccchhhcchhhcccchhcccccchhhhhhheeeeeehHHHHHHH
Confidence 4 6999999999542 1223456789999998888888
Q ss_pred HH----hcCCCEEEEecCccccccCCCCc-----------------------------CCCCCCCCCCCCCCchHHHHHH
Q 047227 118 CA----ELKVKRLIYTSSPSVVFDGVHGI-----------------------------INGNEALPYPPKHNDFYSATKA 164 (485)
Q Consensus 118 ~~----~~~v~r~V~~SS~~vy~~~~~~~-----------------------------~~~~e~~~~~~~~~~~Y~~sK~ 164 (485)
+. +.+..|+|++||...+....... ....+... ...+...|+.||+
T Consensus 163 ~~~~l~~~~~~~IV~isS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Y~~SK~ 241 (311)
T 3o26_A 163 LIPLLQLSDSPRIVNVSSSTGSLKYVSNETALEILGDGDALTEERIDMVVNMLLKDFKENLIETNG-WPSFGAAYTTSKA 241 (311)
T ss_dssp HHHHHTTSSSCEEEEECCGGGSGGGCCCHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHTTCTTTTT-CCSSCHHHHHHHH
T ss_pred hhHhhccCCCCeEEEEecCCcccccccchhhhhhhccccccchhHHHHHHHHHHhhhhcccccccc-CcccchhhHHHHH
Confidence 75 34567999999987653211000 00000000 1134568999999
Q ss_pred HHHHHHHHHhCCC-CceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCceeecccHHHHHHHHHHHHH
Q 047227 165 EGEALVIKANGTN-GLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICAER 238 (485)
Q Consensus 165 ~~E~~~~~~~~~~-g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~D~a~a~~~~~~ 238 (485)
..+.+.+.++.+. ++++.+++||.|..+-... ......++.|+.++.++.
T Consensus 242 a~~~~~~~la~e~~~i~v~~v~PG~v~T~~~~~------------------------~~~~~~~~~a~~~~~~~~ 292 (311)
T 3o26_A 242 CLNAYTRVLANKIPKFQVNCVCPGLVKTEMNYG------------------------IGNYTAEEGAEHVVRIAL 292 (311)
T ss_dssp HHHHHHHHHHHHCTTSEEEEECCCSBCSGGGTT------------------------CCSBCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCCceEEEecCCceecCCcCC------------------------CCCCCHHHHHHHHHHHHh
Confidence 9999999887654 5999999999997653111 012467888888887754
|
| >2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.6e-16 Score=151.17 Aligned_cols=206 Identities=14% Similarity=0.067 Sum_probs=138.0
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhh--cCCCeEEEEecCCCHHHHHHHhc
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEAL--RSGRAHYVSFDLRHKAQVLQALQ 82 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~Dl~d~~~l~~~~~ 82 (485)
+++|++|||||+|+||+++++.|.++| ++|.+++|....... ....+ ...++.++.+|++|++++.++++
T Consensus 3 l~~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~-------~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~ 74 (260)
T 2qq5_A 3 MNGQVCVVTGASRGIGRGIALQLCKAG-ATVYITGRHLDTLRV-------VAQEAQSLGGQCVPVVCDSSQESEVRSLFE 74 (260)
T ss_dssp TTTCEEEESSTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHH-------HHHHHHHHSSEEEEEECCTTSHHHHHHHHH
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCC-CEEEEEeCCHHHHHH-------HHHHHHHcCCceEEEECCCCCHHHHHHHHH
Confidence 456899999999999999999999999 689999886432110 11111 13468899999999988776653
Q ss_pred --------CCCEEEEcCC--C------------CCCCCchhhhHHHHHHHHHHHHHHHH----hcCCCEEEEecCccccc
Q 047227 83 --------GAEVVFHMAA--P------------NSSINNHKLHHSVNVEGTKNVIDACA----ELKVKRLIYTSSPSVVF 136 (485)
Q Consensus 83 --------~~d~Vih~aa--~------------~~~~~~~~~~~~~nv~~t~~ll~a~~----~~~v~r~V~~SS~~vy~ 136 (485)
+.|++||+|| . ....++++..+++|+.++.++.+++. +.+..++|++||...+.
T Consensus 75 ~~~~~~~g~id~lvnnAg~g~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~ 154 (260)
T 2qq5_A 75 QVDREQQGRLDVLVNNAYAGVQTILNTRNKAFWETPASMWDDINNVGLRGHYFCSVYGARLMVPAGQGLIVVISSPGSLQ 154 (260)
T ss_dssp HHHHHHTTCCCEEEECCCTTHHHHHHTTTCCTTTSCTTHHHHHHTTTTHHHHHHHHHHHHHHGGGTCCEEEEECCGGGTS
T ss_pred HHHHhcCCCceEEEECCccccccccccCCCccccCCHHHHHHHHhhcchhHHHHHHHHHHHHhhcCCcEEEEEcChhhcC
Confidence 4799999994 1 11233456788899999877766554 55667999999987652
Q ss_pred cCCCCcCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhC---CCCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEE
Q 047227 137 DGVHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANG---TNGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFI 213 (485)
Q Consensus 137 ~~~~~~~~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~---~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~ 213 (485)
..+...|+.+|...+.+.+.++. .+|+++++++||.+..+........-. .........
T Consensus 155 ----------------~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~--~~~~~~~~~ 216 (260)
T 2qq5_A 155 ----------------YMFNVPYGVGKAACDKLAADCAHELRRHGVSCVSLWPGIVQTELLKEHMAKEE--VLQDPVLKQ 216 (260)
T ss_dssp ----------------CCSSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEECCCSCTTTC-------------------
T ss_pred ----------------CCCCCchHHHHHHHHHHHHHHHHHhccCCeEEEEEecCccccHHHHHhhcccc--ccchhHHHH
Confidence 12346899999999999888764 368999999999998774322111000 000000000
Q ss_pred ecCCCceeecccHHHHHHHHHHHHH
Q 047227 214 IGDGNNVYDFTYVANVAHAHICAER 238 (485)
Q Consensus 214 ~g~g~~~~~~i~v~D~a~a~~~~~~ 238 (485)
.. .....+..++|+|++++.++.
T Consensus 217 ~~--~~~~~~~~pe~va~~v~~l~s 239 (260)
T 2qq5_A 217 FK--SAFSSAETTELSGKCVVALAT 239 (260)
T ss_dssp -------CHHHHHHHHHHHHHHHHT
T ss_pred HH--hhhccCCCHHHHHHHHHHHhc
Confidence 00 011124678999999998764
|
| >1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2, beta-oxidation, peroxisome, SDR, steroid biosynthesis, oxidoreductase, NADP; HET: NAI; 2.38A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=4.6e-16 Score=152.28 Aligned_cols=214 Identities=17% Similarity=0.111 Sum_probs=143.2
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCcccc-C-CccchhhhhhhhcCCCeEEEEecCCCHHHHHHHh-
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIAL-E-PHEEQGILGEALRSGRAHYVSFDLRHKAQVLQAL- 81 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~-~-~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~- 81 (485)
.++|++|||||+|+||+++++.|.++| ++|++.++...... . ...........+...+. ...+|+.|.+++.+++
T Consensus 7 l~gk~~lVTGas~GIG~~~a~~La~~G-a~Vv~~~~~~~~~~~~R~~~~~~~~~~~l~~~~~-~~~~D~~~~~~~~~~~~ 84 (319)
T 1gz6_A 7 FDGRVVLVTGAGGGLGRAYALAFAERG-ALVVVNDLGGDFKGVGKGSSAADKVVEEIRRRGG-KAVANYDSVEAGEKLVK 84 (319)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEECCCBCTTSCBCCSHHHHHHHHHHHHTTC-EEEEECCCGGGHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEcCCcccccccCCHHHHHHHHHHHHhhCC-eEEEeCCCHHHHHHHHH
Confidence 457899999999999999999999999 68998876432100 0 00100001111211121 2358999877555443
Q ss_pred ------cCCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHH----HhcCCCEEEEecCccccccCCCCcCC
Q 047227 82 ------QGAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDAC----AELKVKRLIYTSSPSVVFDGVHGIIN 144 (485)
Q Consensus 82 ------~~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~----~~~~v~r~V~~SS~~vy~~~~~~~~~ 144 (485)
.+.|++||+||... ..++++..+++|+.|+.++.+++ ++.+..|+|++||...+..
T Consensus 85 ~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~grIV~vsS~~~~~~------- 157 (319)
T 1gz6_A 85 TALDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQNYGRIIMTASASGIYG------- 157 (319)
T ss_dssp HHHHHTSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHC-------
T ss_pred HHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECChhhccC-------
Confidence 35899999999432 22356778999999999888886 4456679999999755421
Q ss_pred CCCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCcee
Q 047227 145 GNEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVY 221 (485)
Q Consensus 145 ~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~~ 221 (485)
..+...|+.||...+.+.+.++.+ +|+++.+++|+.+ .+......+ ....
T Consensus 158 --------~~~~~~Y~aSK~a~~~~~~~la~el~~~gI~vn~v~PG~~-t~~~~~~~~------------------~~~~ 210 (319)
T 1gz6_A 158 --------NFGQANYSAAKLGLLGLANTLVIEGRKNNIHCNTIAPNAG-SRMTETVMP------------------EDLV 210 (319)
T ss_dssp --------CTTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEEECC-STTTGGGSC------------------HHHH
T ss_pred --------CCCCHHHHHHHHHHHHHHHHHHHHhcccCEEEEEEeCCCc-cccccccCC------------------hhhh
Confidence 124578999999999998887644 5899999999986 321111000 1122
Q ss_pred ecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCC
Q 047227 222 DFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNME 261 (485)
Q Consensus 222 ~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~ 261 (485)
.++.++|+|.+++.++.. .....|+.|++.++.
T Consensus 211 ~~~~p~dvA~~~~~l~s~-------~~~~tG~~~~v~GG~ 243 (319)
T 1gz6_A 211 EALKPEYVAPLVLWLCHE-------SCEENGGLFEVGAGW 243 (319)
T ss_dssp HHSCGGGTHHHHHHHTST-------TCCCCSCEEEEETTE
T ss_pred ccCCHHHHHHHHHHHhCc-------hhhcCCCEEEECCCe
Confidence 356889999998887542 112568889888763
|
| >4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=3.2e-15 Score=141.13 Aligned_cols=224 Identities=19% Similarity=0.163 Sum_probs=157.9
Q ss_pred CCCCCCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhh-hhcCCCeEEEEecCCCHHHHHH
Q 047227 1 MSGEENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGE-ALRSGRAHYVSFDLRHKAQVLQ 79 (485)
Q Consensus 1 M~~~~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~Dl~d~~~l~~ 79 (485)
|+=..++|++|||||++-||+++++.|.++| ..|.+.+|..... .. ... .....++.++.+|++|++++.+
T Consensus 1 M~~~L~gKvalVTGas~GIG~aia~~la~~G-a~Vv~~~r~~~~~----~~---~~~~~~~~~~~~~~~~Dv~~~~~v~~ 72 (258)
T 4gkb_A 1 MDLNLQDKVVIVTGGASGIGGAISMRLAEER-AIPVVFARHAPDG----AF---LDALAQRQPRATYLPVELQDDAQCRD 72 (258)
T ss_dssp CCCCCTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSCCCH----HH---HHHHHHHCTTCEEEECCTTCHHHHHH
T ss_pred CCCCCCCCEEEEeCCCCHHHHHHHHHHHHcC-CEEEEEECCcccH----HH---HHHHHhcCCCEEEEEeecCCHHHHHH
Confidence 5556778999999999999999999999999 6899998865421 11 111 1224688999999999988877
Q ss_pred Hhc-------CCCEEEEcCCCC------CCCCchhhhHHHHHHHHHHHHHHHHhc---CCCEEEEecCccccccCCCCcC
Q 047227 80 ALQ-------GAEVVFHMAAPN------SSINNHKLHHSVNVEGTKNVIDACAEL---KVKRLIYTSSPSVVFDGVHGII 143 (485)
Q Consensus 80 ~~~-------~~d~Vih~aa~~------~~~~~~~~~~~~nv~~t~~ll~a~~~~---~v~r~V~~SS~~vy~~~~~~~~ 143 (485)
+++ +.|++||+||.. ...++++..+++|+.++..+.+++... +-.++|++||...+.
T Consensus 73 ~v~~~~~~~G~iDiLVNnAGi~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~G~IVnisS~~~~~------- 145 (258)
T 4gkb_A 73 AVAQTIATFGRLDGLVNNAGVNDGIGLDAGRDAFVASLERNLIHYYAMAHYCVPHLKATRGAIVNISSKTAVT------- 145 (258)
T ss_dssp HHHHHHHHHSCCCEEEECCCCCCCCCTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCTHHHH-------
T ss_pred HHHHHHHHhCCCCEEEECCCCCCCCCccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCeEEEEeehhhcc-------
Confidence 764 489999999931 233467788999999988887776432 126899999977653
Q ss_pred CCCCCCCCCCCCCchHHHHHHHHHHHHHHHhC---CCCceEEEEecCCcccCCCCCChH------HHHHHHHcCCCeEEe
Q 047227 144 NGNEALPYPPKHNDFYSATKAEGEALVIKANG---TNGLLTCCIRPSSIFGPGDRLLVP------SLVAAARAGKSKFII 214 (485)
Q Consensus 144 ~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~---~~g~~~~ilRp~~v~Gp~~~~~~~------~~~~~~~~g~~~~~~ 214 (485)
+......|+.+|...+.+.+.++. .+|+++.++.||.+--|....... ..........+.
T Consensus 146 --------~~~~~~~Y~asKaav~~ltr~lA~ela~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~pl--- 214 (258)
T 4gkb_A 146 --------GQGNTSGYCASKGAQLALTREWAVALREHGVRVNAVIPAEVMTPLYRNWIATFEDPEAKLAEIAAKVPL--- 214 (258)
T ss_dssp --------CCSSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCSCC-----------CHHHHHHTTCTT---
T ss_pred --------CCCCchHHHHHHHHHHHHHHHHHHHhcccCeEEEEEecCCCCChhHhhhhhcccChHHHHHHHHhcCCC---
Confidence 123456899999999999887764 468999999999997664332111 112222222211
Q ss_pred cCCCceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCC
Q 047227 215 GDGNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNME 261 (485)
Q Consensus 215 g~g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~ 261 (485)
| +-+...+|+|.+++.++... ..-..|+.+.|.+|.
T Consensus 215 g-----~R~g~peeiA~~v~fLaS~~------a~~iTG~~i~VDGG~ 250 (258)
T 4gkb_A 215 G-----RRFTTPDEIADTAVFLLSPR------ASHTTGEWLFVDGGY 250 (258)
T ss_dssp T-----TSCBCHHHHHHHHHHHHSGG------GTTCCSCEEEESTTT
T ss_pred C-----CCCcCHHHHHHHHHHHhCch------hcCccCCeEEECCCc
Confidence 0 23566899999998875421 223689999997764
|
| >4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.8e-15 Score=142.20 Aligned_cols=221 Identities=14% Similarity=0.030 Sum_probs=154.1
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhh--cCCCeEEEEecCCCHHHHHHHh
Q 047227 4 EENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEAL--RSGRAHYVSFDLRHKAQVLQAL 81 (485)
Q Consensus 4 ~~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~Dl~d~~~l~~~~ 81 (485)
+.++|.+|||||++-||+++++.|.++| .+|.+.+|....... ..+.+ ...++..+.+|++|++++.+++
T Consensus 4 sL~gKvalVTGas~GIG~aiA~~la~~G-a~Vv~~~~~~~~~~~-------~~~~i~~~g~~~~~~~~Dvt~~~~v~~~~ 75 (254)
T 4fn4_A 4 SLKNKVVIVTGAGSGIGRAIAKKFALND-SIVVAVELLEDRLNQ-------IVQELRGMGKEVLGVKADVSKKKDVEEFV 75 (254)
T ss_dssp GGTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHH-------HHHHHHHTTCCEEEEECCTTSHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcC-CEEEEEECCHHHHHH-------HHHHHHhcCCcEEEEEccCCCHHHHHHHH
Confidence 3578999999999999999999999999 699999987542111 11111 2457889999999999888776
Q ss_pred c-------CCCEEEEcCCCCC--------CCCchhhhHHHHHHHHHHHHHHHH----hcCCCEEEEecCccccccCCCCc
Q 047227 82 Q-------GAEVVFHMAAPNS--------SINNHKLHHSVNVEGTKNVIDACA----ELKVKRLIYTSSPSVVFDGVHGI 142 (485)
Q Consensus 82 ~-------~~d~Vih~aa~~~--------~~~~~~~~~~~nv~~t~~ll~a~~----~~~v~r~V~~SS~~vy~~~~~~~ 142 (485)
+ +.|++||+||... +.++++..+++|+.++..+.+++. +.+-.++|++||.....
T Consensus 76 ~~~~~~~G~iDiLVNNAGi~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~IVnisS~~g~~------ 149 (254)
T 4fn4_A 76 RRTFETYSRIDVLCNNAGIMDGVTPVAEVSDELWERVLAVNLYSAFYSSRAVIPIMLKQGKGVIVNTASIAGIR------ 149 (254)
T ss_dssp HHHHHHHSCCCEEEECCCCCCTTCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTC------
T ss_pred HHHHHHcCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEechhhcC------
Confidence 4 4899999999321 234677899999999888876654 44566999999976542
Q ss_pred CCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhC---CCCceEEEEecCCcccCCCCC---ChHHHHHHHHcCCCeEEecC
Q 047227 143 INGNEALPYPPKHNDFYSATKAEGEALVIKANG---TNGLLTCCIRPSSIFGPGDRL---LVPSLVAAARAGKSKFIIGD 216 (485)
Q Consensus 143 ~~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~---~~g~~~~ilRp~~v~Gp~~~~---~~~~~~~~~~~g~~~~~~g~ 216 (485)
+......|+.+|.....+.+.++. .+|+++.++.||.+--|.... .-........+..+
T Consensus 150 ---------~~~~~~~Y~asKaal~~ltr~lA~ela~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~~~------ 214 (254)
T 4fn4_A 150 ---------GGFAGAPYTVAKHGLIGLTRSIAAHYGDQGIRAVAVLPGTVKTNIGLGSSKPSELGMRTLTKLMS------ 214 (254)
T ss_dssp ---------SSSSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSSCTTSCSSCCHHHHHHHHHHHT------
T ss_pred ---------CCCCChHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEEeCCCCCcccccccCCcHHHHHHHHhcCC------
Confidence 123456899999999988877664 368999999999987653211 11111111111100
Q ss_pred CCceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCC
Q 047227 217 GNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNME 261 (485)
Q Consensus 217 g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~ 261 (485)
...-+...+|+|.+++.++... ..-..|+.+.|.+|-
T Consensus 215 --~~~R~g~pediA~~v~fLaSd~------a~~iTG~~i~VDGG~ 251 (254)
T 4fn4_A 215 --LSSRLAEPEDIANVIVFLASDE------ASFVNGDAVVVDGGL 251 (254)
T ss_dssp --TCCCCBCHHHHHHHHHHHHSGG------GTTCCSCEEEESTTG
T ss_pred --CCCCCcCHHHHHHHHHHHhCch------hcCCcCCEEEeCCCc
Confidence 0112456899999999875421 222678999887763
|
| >1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain dehydrogenase/reductase family, lyase; 2.00A {Arthrobacter SP} | Back alignment and structure |
|---|
Probab=99.67 E-value=5e-16 Score=146.21 Aligned_cols=212 Identities=14% Similarity=0.073 Sum_probs=140.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEe-e--cCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHH-HHHh-
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIA-D--LSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQV-LQAL- 81 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~-~--r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l-~~~~- 81 (485)
+|++|||||+|+||+++++.|.++| ++|.++ + |...... . ....+ .+.+.. |..+.+.+ .++.
T Consensus 1 ~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~~~~r~~~~~~----~---~~~~~--~~~~~~--~~~~v~~~~~~~~~ 68 (244)
T 1zmo_A 1 MVIALVTHARHFAGPAAVEALTQDG-YTVVCHDASFADAAERQ----R---FESEN--PGTIAL--AEQKPERLVDATLQ 68 (244)
T ss_dssp -CEEEESSTTSTTHHHHHHHHHHTT-CEEEECCGGGGSHHHHH----H---HHHHS--TTEEEC--CCCCGGGHHHHHGG
T ss_pred CCEEEEECCCChHHHHHHHHHHHCC-CEEEEecCCcCCHHHHH----H---HHHHh--CCCccc--CHHHHHHHHHHHHH
Confidence 4789999999999999999999999 689988 5 7543110 0 11111 123322 44443333 2232
Q ss_pred --cCCCEEEEcCCCCCC----------CCchhhhHHHHHHHHHHHHHHHH----hcCCCEEEEecCccccccCCCCcCCC
Q 047227 82 --QGAEVVFHMAAPNSS----------INNHKLHHSVNVEGTKNVIDACA----ELKVKRLIYTSSPSVVFDGVHGIING 145 (485)
Q Consensus 82 --~~~d~Vih~aa~~~~----------~~~~~~~~~~nv~~t~~ll~a~~----~~~v~r~V~~SS~~vy~~~~~~~~~~ 145 (485)
.++|+|||+||.... .++++..+++|+.++.++.+++. +.+..++|++||...+.
T Consensus 69 ~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~--------- 139 (244)
T 1zmo_A 69 HGEAIDTIVSNDYIPRPMNRLPLEGTSEADIRQMFEALSIFPILLLQSAIAPLRAAGGASVIFITSSVGKK--------- 139 (244)
T ss_dssp GSSCEEEEEECCCCCTTGGGCCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTS---------
T ss_pred HcCCCCEEEECCCcCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECChhhCC---------
Confidence 258999999994322 23456789999999999988875 45567999999987763
Q ss_pred CCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCC---CCCh-HHHHHHHHc-CCCeEEecCC
Q 047227 146 NEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGD---RLLV-PSLVAAARA-GKSKFIIGDG 217 (485)
Q Consensus 146 ~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~---~~~~-~~~~~~~~~-g~~~~~~g~g 217 (485)
+..+...|+.+|...+.+.+.++.+ .|+++++++||.+..+.. .... +........ ..
T Consensus 140 ------~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~-------- 205 (244)
T 1zmo_A 140 ------PLAYNPLYGPARAATVALVESAAKTLSRDGILLYAIGPNFFNNPTYFPTSDWENNPELRERVDRDV-------- 205 (244)
T ss_dssp ------CCTTCTTHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCBTTTBCHHHHHHCHHHHHHHHHHC--------
T ss_pred ------CCCCchHHHHHHHHHHHHHHHHHHHHhhcCcEEEEEeeCCCcCCcccccccccchHHHHHHHhcCC--------
Confidence 1234568999999999998877643 589999999999876642 1100 011111111 11
Q ss_pred CceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCC
Q 047227 218 NNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNM 260 (485)
Q Consensus 218 ~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~ 260 (485)
....+...+|+|++++.++.... ....|+.+.+.++
T Consensus 206 -p~~r~~~pe~vA~~v~~l~s~~~------~~~tG~~i~vdgG 241 (244)
T 1zmo_A 206 -PLGRLGRPDEMGALITFLASRRA------APIVGQFFAFTGG 241 (244)
T ss_dssp -TTCSCBCHHHHHHHHHHHHTTTT------GGGTTCEEEESTT
T ss_pred -CCCCCcCHHHHHHHHHHHcCccc------cCccCCEEEeCCC
Confidence 11236789999999998865221 2267888888765
|
| >4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A | Back alignment and structure |
|---|
Probab=99.66 E-value=6.7e-15 Score=139.48 Aligned_cols=222 Identities=14% Similarity=0.099 Sum_probs=154.2
Q ss_pred CCCCCEEEEEcCCC--chHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHh
Q 047227 4 EENERLCVVTGGRG--FAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQAL 81 (485)
Q Consensus 4 ~~~~~~iLVtGgtG--~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~ 81 (485)
+.++|++|||||+| -||.++++.|.++| ++|.+.+|+........+ ........++..+.+|++|++++.+++
T Consensus 3 ~l~gK~alVTGaa~~~GIG~aiA~~la~~G-a~Vvi~~r~~~~~~~~~~----~~~~~~~~~~~~~~~Dv~~~~~v~~~~ 77 (256)
T 4fs3_A 3 NLENKTYVIMGIANKRSIAFGVAKVLDQLG-AKLVFTYRKERSRKELEK----LLEQLNQPEAHLYQIDVQSDEEVINGF 77 (256)
T ss_dssp CCTTCEEEEECCCSTTCHHHHHHHHHHHTT-CEEEEEESSGGGHHHHHH----HHGGGTCSSCEEEECCTTCHHHHHHHH
T ss_pred CCCCCEEEEECCCCCchHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHH----HHHhcCCCcEEEEEccCCCHHHHHHHH
Confidence 35689999999887 79999999999999 699999987532111000 111122457899999999999887776
Q ss_pred c-------CCCEEEEcCCCCC-----------CCCchhhhHHHHHHHHHHHHHHHHhcC--CCEEEEecCccccccCCCC
Q 047227 82 Q-------GAEVVFHMAAPNS-----------SINNHKLHHSVNVEGTKNVIDACAELK--VKRLIYTSSPSVVFDGVHG 141 (485)
Q Consensus 82 ~-------~~d~Vih~aa~~~-----------~~~~~~~~~~~nv~~t~~ll~a~~~~~--v~r~V~~SS~~vy~~~~~~ 141 (485)
+ +.|++||+|+... ..+++...+++|+.++..+..++...- -.++|++||.....
T Consensus 78 ~~~~~~~G~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~IVnisS~~~~~----- 152 (256)
T 4fs3_A 78 EQIGKDVGNIDGVYHSIAFANMEDLRGRFSETSREGFLLAQDISSYSLTIVAHEAKKLMPEGGSIVATTYLGGEF----- 152 (256)
T ss_dssp HHHHHHHCCCSEEEECCCCCCGGGGTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCTTCEEEEEEECGGGTS-----
T ss_pred HHHHHHhCCCCEEEeccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCEEEEEecccccc-----
Confidence 4 4899999999321 112334567889988888887776542 25899999976542
Q ss_pred cCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhC---CCCceEEEEecCCcccCCCCC--ChHHHHHHHHcCCCeEEecC
Q 047227 142 IINGNEALPYPPKHNDFYSATKAEGEALVIKANG---TNGLLTCCIRPSSIFGPGDRL--LVPSLVAAARAGKSKFIIGD 216 (485)
Q Consensus 142 ~~~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~---~~g~~~~ilRp~~v~Gp~~~~--~~~~~~~~~~~g~~~~~~g~ 216 (485)
+......|+.+|...+.+.+.++. .+|+++.++.||.+--+.... ..+.......+..|.
T Consensus 153 ----------~~~~~~~Y~asKaal~~ltr~lA~Ela~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~Pl----- 217 (256)
T 4fs3_A 153 ----------AVQNYNVMGVAKASLEANVKYLALDLGPDNIRVNAISAGPIRTLSAKGVGGFNTILKEIKERAPL----- 217 (256)
T ss_dssp ----------CCTTTHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCSGGGTTCTTHHHHHHHHHHHSTT-----
T ss_pred ----------CcccchhhHHHHHHHHHHHHHHHHHhCccCeEEEEEecCCCCChhhhhccCCHHHHHHHHhcCCC-----
Confidence 233557899999999998887664 368999999999987654322 223444444443322
Q ss_pred CCceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCC
Q 047227 217 GNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNM 260 (485)
Q Consensus 217 g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~ 260 (485)
.-+...+|+|.+++.++... ..-..|+.+.|.+|
T Consensus 218 ----~R~g~peevA~~v~fL~Sd~------a~~iTG~~i~VDGG 251 (256)
T 4fs3_A 218 ----KRNVDQVEVGKTAAYLLSDL------SSGVTGENIHVDSG 251 (256)
T ss_dssp ----SSCCCHHHHHHHHHHHHSGG------GTTCCSCEEEESTT
T ss_pred ----CCCcCHHHHHHHHHHHhCch------hcCccCCEEEECcC
Confidence 12456899999998875421 12267899988776
|
| >1d7o_A Enoyl-[acyl-carrier protein] reductase (NADH) PRE; triclosan, enoyl reductase, oxidoreductase; HET: NAD TCL; 1.90A {Brassica napus} SCOP: c.2.1.2 PDB: 1eno_A* 1enp_A* 1cwu_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=1.8e-15 Score=146.78 Aligned_cols=223 Identities=11% Similarity=0.027 Sum_probs=144.5
Q ss_pred CCCCCEEEEEcCC--CchHHHHHHHHHhcCCceEEEeecCCcc-------ccCCccchhhhhhhhcCCC----eEEEEec
Q 047227 4 EENERLCVVTGGR--GFAARHLVEMLIRYDMFSVRIADLSDSI-------ALEPHEEQGILGEALRSGR----AHYVSFD 70 (485)
Q Consensus 4 ~~~~~~iLVtGgt--G~iG~~l~~~Ll~~G~~~V~~~~r~~~~-------~~~~~~~~~~~~~~~~~~~----v~~~~~D 70 (485)
..++|++|||||+ |.||+++++.|.++| ++|.+++|.... .....++ ... +.... ...+.+|
T Consensus 5 ~l~~k~~lVTGas~~~GIG~aia~~la~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~ 79 (297)
T 1d7o_A 5 DLRGKRAFIAGIADDNGYGWAVAKSLAAAG-AEILVGTWVPALNIFETSLRRGKFDQ---SRV-LPDGSLMEIKKVYPLD 79 (297)
T ss_dssp CCTTCEEEEECCSSSSSHHHHHHHHHHHTT-CEEEEEEEHHHHHHHHHHHHTTTTTG---GGB-CTTSSBCCEEEEEEEC
T ss_pred ccCCCEEEEECCCCCCChHHHHHHHHHHCC-CeEEEeeccccchhhhhhhhhhHhhh---hhh-hccccccccccccccc
Confidence 3567899999999 999999999999999 689888753210 0000000 000 10111 2333333
Q ss_pred --------CC----C--------HHHHHHHh-------cCCCEEEEcCCCCC---------CCCchhhhHHHHHHHHHHH
Q 047227 71 --------LR----H--------KAQVLQAL-------QGAEVVFHMAAPNS---------SINNHKLHHSVNVEGTKNV 114 (485)
Q Consensus 71 --------l~----d--------~~~l~~~~-------~~~d~Vih~aa~~~---------~~~~~~~~~~~nv~~t~~l 114 (485)
+. | ++++.+++ .+.|++||+||... +.++++..+++|+.++.++
T Consensus 80 ~~~~~~~dv~~Dv~~~~~~~~~~~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l 159 (297)
T 1d7o_A 80 AVFDNPEDVPEDVKANKRYAGSSNWTVQEAAECVRQDFGSIDILVHSLANGPEVSKPLLETSRKGYLAAISASSYSFVSL 159 (297)
T ss_dssp TTCCSGGGSCHHHHTSHHHHHCCCCSHHHHHHHHHHHHSCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHH
T ss_pred eeccchhhhhhhhhccccccccCHHHHHHHHHHHHHHcCCCCEEEECCccCccCCCCcccCCHHHHHHHHHHhhhHHHHH
Confidence 22 1 22233332 36899999998321 2235677899999999999
Q ss_pred HHHHHhc--CCCEEEEecCccccccCCCCcCCCCCCCCCCCCCC-chHHHHHHHHHHHHHHHhCC----CCceEEEEecC
Q 047227 115 IDACAEL--KVKRLIYTSSPSVVFDGVHGIINGNEALPYPPKHN-DFYSATKAEGEALVIKANGT----NGLLTCCIRPS 187 (485)
Q Consensus 115 l~a~~~~--~v~r~V~~SS~~vy~~~~~~~~~~~e~~~~~~~~~-~~Y~~sK~~~E~~~~~~~~~----~g~~~~ilRp~ 187 (485)
.+++... .-.++|++||...+.. .... ..|+.+|...+.+.+.++.+ +|+++.+++||
T Consensus 160 ~~~~~~~m~~~g~iv~isS~~~~~~---------------~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~vn~v~PG 224 (297)
T 1d7o_A 160 LSHFLPIMNPGGASISLTYIASERI---------------IPGYGGGMSSAKAALESDTRVLAFEAGRKQNIRVNTISAG 224 (297)
T ss_dssp HHHHGGGEEEEEEEEEEECGGGTSC---------------CTTCTTTHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred HHHHHHHhccCceEEEEeccccccC---------------CCCcchHHHHHHHHHHHHHHHHHHHhCcccCcEEEEEecc
Confidence 9999764 1258999999766521 1122 47999999999998887654 58999999999
Q ss_pred CcccCCCCCC--hHHHHHHHHcCCCeEEecCCCceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCC
Q 047227 188 SIFGPGDRLL--VPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNME 261 (485)
Q Consensus 188 ~v~Gp~~~~~--~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~ 261 (485)
.+.++..... .+.+........+ ...+..++|+|++++.++... ..-..|+.+++.++.
T Consensus 225 ~v~T~~~~~~~~~~~~~~~~~~~~p---------~~r~~~pedvA~~v~~l~s~~------~~~itG~~i~vdgG~ 285 (297)
T 1d7o_A 225 PLGSRAAKAIGFIDTMIEYSYNNAP---------IQKTLTADEVGNAAAFLVSPL------ASAITGATIYVDNGL 285 (297)
T ss_dssp CCBCCCSSCCSHHHHHHHHHHHHSS---------SCCCBCHHHHHHHHHHHTSGG------GTTCCSCEEEESTTG
T ss_pred ccccchhhhccccHHHHHHhhccCC---------CCCCCCHHHHHHHHHHHhCcc------ccCCCCCEEEECCCc
Confidence 9998864432 2333333322221 123567999999998875421 122578899998864
|
| >4h15_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, nysgrc; HET: MSE; 1.45A {Sinorhizobium meliloti} PDB: 4h16_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=4.5e-15 Score=140.50 Aligned_cols=213 Identities=16% Similarity=0.132 Sum_probs=148.8
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc-
Q 047227 4 EENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ- 82 (485)
Q Consensus 4 ~~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~- 82 (485)
+.++|++|||||++-||+++++.|.++| ++|.+.+|..... ..+...+.+|++|++++.++++
T Consensus 8 ~L~GK~alVTGas~GIG~aia~~la~~G-a~V~~~~r~~~~~---------------~~~~~~~~~Dv~~~~~v~~~~~~ 71 (261)
T 4h15_A 8 NLRGKRALITAGTKGAGAATVSLFLELG-AQVLTTARARPEG---------------LPEELFVEADLTTKEGCAIVAEA 71 (261)
T ss_dssp CCTTCEEEESCCSSHHHHHHHHHHHHTT-CEEEEEESSCCTT---------------SCTTTEEECCTTSHHHHHHHHHH
T ss_pred CCCCCEEEEeccCcHHHHHHHHHHHHcC-CEEEEEECCchhC---------------CCcEEEEEcCCCCHHHHHHHHHH
Confidence 3568999999999999999999999999 6999999864311 1233478899999998877664
Q ss_pred ------CCCEEEEcCCCCC---------CCCchhhhHHHHHHHHHHHHHHHH----hcCCCEEEEecCccccccCCCCcC
Q 047227 83 ------GAEVVFHMAAPNS---------SINNHKLHHSVNVEGTKNVIDACA----ELKVKRLIYTSSPSVVFDGVHGII 143 (485)
Q Consensus 83 ------~~d~Vih~aa~~~---------~~~~~~~~~~~nv~~t~~ll~a~~----~~~v~r~V~~SS~~vy~~~~~~~~ 143 (485)
+.|++||+||... +.++++..+++|+.++.++.+++. +.+-.++|++||......
T Consensus 72 ~~~~~G~iDilVnnAG~~~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~Iv~isS~~~~~~------ 145 (261)
T 4h15_A 72 TRQRLGGVDVIVHMLGGSSAAGGGFSALSDDDWYNELSLNLFAAVRLDRQLVPDMVARGSGVVVHVTSIQRVLP------ 145 (261)
T ss_dssp HHHHTSSCSEEEECCCCCCCCSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSC------
T ss_pred HHHHcCCCCEEEECCCCCccCCCCcccCCHHHHHHHHHHHhHHHHHHHHhhchhhhhcCCceEEEEEehhhccC------
Confidence 4899999998321 223567789999999888766654 445678999999765420
Q ss_pred CCCCCCCCCCCCCchHHHHHHHHHHHHHHHhC---CCCceEEEEecCCcccCCCCCChH--------------HHHHHHH
Q 047227 144 NGNEALPYPPKHNDFYSATKAEGEALVIKANG---TNGLLTCCIRPSSIFGPGDRLLVP--------------SLVAAAR 206 (485)
Q Consensus 144 ~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~---~~g~~~~ilRp~~v~Gp~~~~~~~--------------~~~~~~~ 206 (485)
.......|+.||...+.+.+.++. .+|+++.++.||.+--|....... .+.....
T Consensus 146 --------~~~~~~~Y~asKaal~~lt~~lA~Ela~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (261)
T 4h15_A 146 --------LPESTTAYAAAKAALSTYSKAMSKEVSPKGVRVVRVSPGWIETEASVRLAERLAKQAGTDLEGGKKIIMDGL 217 (261)
T ss_dssp --------CTTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCHHHHHHHHHHHHHTTCCHHHHHHHHHHHT
T ss_pred --------CCCccHHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEeCCCcCCcchhhhhHHHHHhhccchhhHHHHHHHHh
Confidence 012346799999999988877664 368999999999986542111111 1111111
Q ss_pred cCCCeEEecCCCceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCC
Q 047227 207 AGKSKFIIGDGNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNME 261 (485)
Q Consensus 207 ~g~~~~~~g~g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~ 261 (485)
... +..-+...+|+|++++.++... ..-..|+.+.|.+|-
T Consensus 218 ~~~---------PlgR~g~peevA~~v~fLaS~~------a~~itG~~i~VDGG~ 257 (261)
T 4h15_A 218 GGI---------PLGRPAKPEEVANLIAFLASDR------AASITGAEYTIDGGT 257 (261)
T ss_dssp TCC---------TTSSCBCHHHHHHHHHHHHSGG------GTTCCSCEEEESTTC
T ss_pred cCC---------CCCCCcCHHHHHHHHHHHhCch------hcCccCcEEEECCcC
Confidence 111 2223667999999998875421 222678999887763
|
| >4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=99.65 E-value=8.6e-16 Score=143.13 Aligned_cols=221 Identities=17% Similarity=0.066 Sum_probs=155.1
Q ss_pred CCC--CCCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhh-hcCCCeEEEEecCCCHHHH
Q 047227 1 MSG--EENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEA-LRSGRAHYVSFDLRHKAQV 77 (485)
Q Consensus 1 M~~--~~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~l 77 (485)
|++ +.++|++|||||++-||.++++.|.++| .+|.+.+|.... +. .... ....++..+.+|++|++++
T Consensus 1 M~n~f~L~GKvalVTGas~GIG~aiA~~la~~G-a~Vvi~~r~~~~-----~~---~~~~~~~g~~~~~~~~Dv~d~~~v 71 (247)
T 4hp8_A 1 MKNPFSLEGRKALVTGANTGLGQAIAVGLAAAG-AEVVCAARRAPD-----ET---LDIIAKDGGNASALLIDFADPLAA 71 (247)
T ss_dssp --CTTCCTTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESSCCH-----HH---HHHHHHTTCCEEEEECCTTSTTTT
T ss_pred CcCCcCCCCCEEEEeCcCCHHHHHHHHHHHHcC-CEEEEEeCCcHH-----HH---HHHHHHhCCcEEEEEccCCCHHHH
Confidence 665 3578999999999999999999999999 699999886421 10 1111 1245788999999999888
Q ss_pred HHHhc--CCCEEEEcCCCC-------CCCCchhhhHHHHHHHHHHHHHHHH----hcC-CCEEEEecCccccccCCCCcC
Q 047227 78 LQALQ--GAEVVFHMAAPN-------SSINNHKLHHSVNVEGTKNVIDACA----ELK-VKRLIYTSSPSVVFDGVHGII 143 (485)
Q Consensus 78 ~~~~~--~~d~Vih~aa~~-------~~~~~~~~~~~~nv~~t~~ll~a~~----~~~-v~r~V~~SS~~vy~~~~~~~~ 143 (485)
.++++ +.|++||+||.. .+.++++..+++|+.++..+.+++. +.+ -.++|.+||.....
T Consensus 72 ~~~~~~g~iDiLVNNAGi~~~~~~~~~~~~~w~~~~~vNl~g~f~~~~~~~~~m~~~g~~G~IVnisS~~~~~------- 144 (247)
T 4hp8_A 72 KDSFTDAGFDILVNNAGIIRRADSVEFSELDWDEVMDVNLKALFFTTQAFAKELLAKGRSGKVVNIASLLSFQ------- 144 (247)
T ss_dssp TTSSTTTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTS-------
T ss_pred HHHHHhCCCCEEEECCCCCCCCCcccccHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCCcEEEEEechhhCC-------
Confidence 87775 389999999922 2345678899999999988877643 333 46899999976542
Q ss_pred CCCCCCCCCCCCCchHHHHHHHHHHHHHHHhC---CCCceEEEEecCCcccCCCCCCh--HHHHHHHHcCCCeEEecCCC
Q 047227 144 NGNEALPYPPKHNDFYSATKAEGEALVIKANG---TNGLLTCCIRPSSIFGPGDRLLV--PSLVAAARAGKSKFIIGDGN 218 (485)
Q Consensus 144 ~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~---~~g~~~~ilRp~~v~Gp~~~~~~--~~~~~~~~~g~~~~~~g~g~ 218 (485)
+......|+.||.....+.+.++. .+|+++.++.||.+--|...... +.......+..|.
T Consensus 145 --------g~~~~~~Y~asKaav~~ltr~lA~Ela~~gIrVNaV~PG~i~T~~~~~~~~~~~~~~~~~~~~Pl------- 209 (247)
T 4hp8_A 145 --------GGIRVPSYTAAKHGVAGLTKLLANEWAAKGINVNAIAPGYIETNNTEALRADAARNKAILERIPA------- 209 (247)
T ss_dssp --------CCSSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGGGHHHHTSHHHHHHHHTTCTT-------
T ss_pred --------CCCCChHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEeeCCCCCcchhhcccCHHHHHHHHhCCCC-------
Confidence 123456899999999998887654 36899999999998755321110 1122223333222
Q ss_pred ceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCC
Q 047227 219 NVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNM 260 (485)
Q Consensus 219 ~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~ 260 (485)
.-+...+|+|.+++.+.... ..-..|+.+.|.+|
T Consensus 210 --gR~g~peeiA~~v~fLaSd~------a~~iTG~~i~VDGG 243 (247)
T 4hp8_A 210 --GRWGHSEDIAGAAVFLSSAA------ADYVHGAILNVDGG 243 (247)
T ss_dssp --SSCBCTHHHHHHHHHHTSGG------GTTCCSCEEEESTT
T ss_pred --CCCcCHHHHHHHHHHHhCch------hcCCcCCeEEECcc
Confidence 23556899999998874321 22267888888765
|
| >3mje_A AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.36A {Streptomyces nodosus} PDB: 3mjc_A* 3mjs_A* 3mjv_A* 3mjt_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=1e-14 Score=150.16 Aligned_cols=201 Identities=15% Similarity=0.098 Sum_probs=145.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhh-cCCCeEEEEecCCCHHHHHHHhcC--
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEAL-RSGRAHYVSFDLRHKAQVLQALQG-- 83 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~~-- 83 (485)
++++|||||+|.||.+++++|.++|..+|.+++|........ .+ ...... ...++.++.+|++|++++.++++.
T Consensus 239 ~~~vLITGgsgGIG~alA~~La~~Ga~~vvl~~R~~~~~~~~-~~--l~~~l~~~g~~v~~~~~Dvtd~~~v~~~~~~i~ 315 (496)
T 3mje_A 239 HGSVLVTGGTGGIGGRVARRLAEQGAAHLVLTSRRGADAPGA-AE--LRAELEQLGVRVTIAACDAADREALAALLAELP 315 (496)
T ss_dssp CSEEEEETCSSHHHHHHHHHHHHTTCSEEEEEESSGGGSTTH-HH--HHHHHHHTTCEEEEEECCTTCHHHHHHHHHTCC
T ss_pred CCEEEEECCCCchHHHHHHHHHHCCCcEEEEEeCCCCChHHH-HH--HHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHH
Confidence 379999999999999999999999954788888764321111 11 111111 235789999999999999998853
Q ss_pred ----CCEEEEcCCCC-C-------CCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCccccccCCCCcCCCCCCCCC
Q 047227 84 ----AEVVFHMAAPN-S-------SINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVVFDGVHGIINGNEALPY 151 (485)
Q Consensus 84 ----~d~Vih~aa~~-~-------~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy~~~~~~~~~~~e~~~~ 151 (485)
.|+|||+||.. . ..++....+++|+.|+.++.++++..+.++||++||.+.+..
T Consensus 316 ~~g~ld~vVh~AGv~~~~~~l~~~t~e~~~~vl~~nv~g~~~L~~~~~~~~~~~iV~~SS~a~~~g-------------- 381 (496)
T 3mje_A 316 EDAPLTAVFHSAGVAHDDAPVADLTLGQLDALMRAKLTAARHLHELTADLDLDAFVLFSSGAAVWG-------------- 381 (496)
T ss_dssp TTSCEEEEEECCCCCCSCCCTTTCCHHHHHHHHHTTHHHHHHHHHHHTTSCCSEEEEEEEHHHHTT--------------
T ss_pred HhCCCeEEEECCcccCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHhhccCCCEEEEEeChHhcCC--------------
Confidence 79999999943 1 223456789999999999999999988899999999776531
Q ss_pred CCCCCchHHHHHHHHHHHHHHHhCCCCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCceeecccHHHHHH
Q 047227 152 PPKHNDFYSATKAEGEALVIKANGTNGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAH 231 (485)
Q Consensus 152 ~~~~~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~D~a~ 231 (485)
......|+.+|...+.+.+.+. ..|++++++.||.+.+++.... ......+...+ ...+..++.++
T Consensus 382 -~~g~~~YaAaKa~ldala~~~~-~~Gi~v~sV~pG~w~~~gm~~~-~~~~~~l~~~g-----------~~~l~pe~~~~ 447 (496)
T 3mje_A 382 -SGGQPGYAAANAYLDALAEHRR-SLGLTASSVAWGTWGEVGMATD-PEVHDRLVRQG-----------VLAMEPEHALG 447 (496)
T ss_dssp -CTTCHHHHHHHHHHHHHHHHHH-HTTCCCEEEEECEESSSCC-------CHHHHHTT-----------EEEECHHHHHH
T ss_pred -CCCcHHHHHHHHHHHHHHHHHH-hcCCeEEEEECCcccCCccccC-hHHHHHHHhcC-----------CCCCCHHHHHH
Confidence 2346789999999999988765 4699999999999876653211 11111111111 12356889999
Q ss_pred HHHHHHH
Q 047227 232 AHICAER 238 (485)
Q Consensus 232 a~~~~~~ 238 (485)
++..++.
T Consensus 448 ~l~~~l~ 454 (496)
T 3mje_A 448 ALDQMLE 454 (496)
T ss_dssp HHHHHHH
T ss_pred HHHHHHc
Confidence 9888876
|
| >3qp9_A Type I polyketide synthase pikaii; rossmann fold, ketoreductase, epimerization, oxidoreductase; 1.88A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.58 E-value=5.8e-14 Score=146.18 Aligned_cols=205 Identities=17% Similarity=0.062 Sum_probs=142.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEe-ecCCccccC-------Cccchhhhhhh-hcCCCeEEEEecCCCHHH
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIA-DLSDSIALE-------PHEEQGILGEA-LRSGRAHYVSFDLRHKAQ 76 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~-~r~~~~~~~-------~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~ 76 (485)
+++++|||||+|.||.+++++|.++|..+|.++ +|+...... ........... ....++.++.+|++|+++
T Consensus 250 ~~~~vLITGgsgGIG~~lA~~La~~G~~~vvl~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~Dvtd~~~ 329 (525)
T 3qp9_A 250 ADGTVLVTGAEEPAAAEAARRLARDGAGHLLLHTTPSGSEGAEGTSGAAEDSGLAGLVAELADLGATATVVTCDLTDAEA 329 (525)
T ss_dssp TTSEEEESSTTSHHHHHHHHHHHHHTCCEEEEEECCCC---------------CHHHHHHHHHHTCEEEEEECCTTSHHH
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHcCCCEEEEEeCCCCCCccccccccccCHHHHHHHHHHHhcCCEEEEEECCCCCHHH
Confidence 468999999999999999999999995446666 776432000 00000111111 124578999999999999
Q ss_pred HHHHhcC------CCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHHHhcC-----CCEEEEecCccccccC
Q 047227 77 VLQALQG------AEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDACAELK-----VKRLIYTSSPSVVFDG 138 (485)
Q Consensus 77 l~~~~~~------~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~~~~~-----v~r~V~~SS~~vy~~~ 138 (485)
+.++++. .|.|||+||... +.++.+..+++|+.|+.++.+++.... ..+||++||.+.+..
T Consensus 330 v~~~~~~i~~~g~id~vVh~AGv~~~~~~~~~~~~~~~~v~~~nv~g~~~L~~~~~~~~~~~~~~~~iV~~SS~a~~~g- 408 (525)
T 3qp9_A 330 AARLLAGVSDAHPLSAVLHLPPTVDSEPLAATDADALARVVTAKATAALHLDRLLREAAAAGGRPPVLVLFSSVAAIWG- 408 (525)
T ss_dssp HHHHHHTSCTTSCEEEEEECCCCCCCCCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHTC----CCCEEEEEEEGGGTTC-
T ss_pred HHHHHHHHHhcCCCcEEEECCcCCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCEEEEECCHHHcCC-
Confidence 9998864 699999999322 223566789999999999999998876 789999999776531
Q ss_pred CCCcCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhCCCCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCC
Q 047227 139 VHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANGTNGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGN 218 (485)
Q Consensus 139 ~~~~~~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~ 218 (485)
......|+.+|...+.+...+. ..|++++++.||.+ +.+...- ......+....
T Consensus 409 --------------~~g~~~YaaaKa~l~~lA~~~~-~~gi~v~sI~pG~~-~tgm~~~-~~~~~~~~~~g--------- 462 (525)
T 3qp9_A 409 --------------GAGQGAYAAGTAFLDALAGQHR-ADGPTVTSVAWSPW-EGSRVTE-GATGERLRRLG--------- 462 (525)
T ss_dssp --------------CTTCHHHHHHHHHHHHHHTSCC-SSCCEEEEEEECCB-TTSGGGS-SHHHHHHHHTT---------
T ss_pred --------------CCCCHHHHHHHHHHHHHHHHHH-hCCCCEEEEECCcc-ccccccc-hhhHHHHHhcC---------
Confidence 2346789999999999877654 46999999999998 3221100 11111111111
Q ss_pred ceeecccHHHHHHHHHHHHHH
Q 047227 219 NVYDFTYVANVAHAHICAERA 239 (485)
Q Consensus 219 ~~~~~i~v~D~a~a~~~~~~~ 239 (485)
...+..+++++++..++..
T Consensus 463 --~~~l~pee~a~~l~~~l~~ 481 (525)
T 3qp9_A 463 --LRPLAPATALTALDTALGH 481 (525)
T ss_dssp --BCCBCHHHHHHHHHHHHHH
T ss_pred --CCCCCHHHHHHHHHHHHhC
Confidence 1346789999999988773
|
| >2o2s_A Enoyl-acyl carrier reductase; enoyl reductase, triclosan, rossmann fold, oxidoreductase; HET: NAD TCL; 2.60A {Toxoplasma gondii} PDB: 2o50_A 3nj8_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=4.9e-14 Score=137.79 Aligned_cols=222 Identities=12% Similarity=0.019 Sum_probs=138.9
Q ss_pred CCCCEEEEEcC--CCchHHHHHHHHHhcCCceEEEeecCCc-------cccCCccchhhhhhhhcCC----CeEEEEecC
Q 047227 5 ENERLCVVTGG--RGFAARHLVEMLIRYDMFSVRIADLSDS-------IALEPHEEQGILGEALRSG----RAHYVSFDL 71 (485)
Q Consensus 5 ~~~~~iLVtGg--tG~iG~~l~~~Ll~~G~~~V~~~~r~~~-------~~~~~~~~~~~~~~~~~~~----~v~~~~~Dl 71 (485)
.++|++||||| +|.||+++++.|.++| ++|.+++|.+. .......+ ... +... .+..+.+|+
T Consensus 7 l~gk~~lVTGa~~s~GIG~aia~~la~~G-~~Vv~~~r~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~d~ 81 (315)
T 2o2s_A 7 LRGQTAFVAGVADSHGYGWAIAKHLASAG-ARVALGTWPPVLGLFQKSLQSGRLDE---DRK-LPDGSLIEFAGVYPLDA 81 (315)
T ss_dssp CTTCEEEEECCSSSSSHHHHHHHHHHTTT-CEEEEEECHHHHHHHHHHHHHTTTHH---HHB-CTTSCBCCCSCEEECCT
T ss_pred CCCCEEEEeCCCCCCChHHHHHHHHHHCC-CEEEEEecccccchhhhhhhhhhhhh---hhh-hhccccccccccccccc
Confidence 56789999999 8999999999999999 68988876421 00000000 000 1011 124444442
Q ss_pred ------------CC--------HHHHHHHh-------cCCCEEEEcCCCCC---------CCCchhhhHHHHHHHHHHHH
Q 047227 72 ------------RH--------KAQVLQAL-------QGAEVVFHMAAPNS---------SINNHKLHHSVNVEGTKNVI 115 (485)
Q Consensus 72 ------------~d--------~~~l~~~~-------~~~d~Vih~aa~~~---------~~~~~~~~~~~nv~~t~~ll 115 (485)
+| ++++.+++ .+.|++||+||... ..++++..+++|+.++.++.
T Consensus 82 ~~~~~~~~~~Dv~~~~~~~~~d~~~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~ 161 (315)
T 2o2s_A 82 AFDKPEDVPQDIKDNKRYAGVDGYTIKEVAVKVKQDLGNIDILVHSLANGPEVTKPLLETSRKGYLAASSNSAYSFVSLL 161 (315)
T ss_dssp TCSSTTSSCHHHHTCGGGSSCCCCSHHHHHHHHHHHHCSEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHH
T ss_pred cccccchhhhhhhcccccccCCHHHHHHHHHHHHHhcCCCCEEEECCccCCcCCCCcccCCHHHHHHHHhhhhHHHHHHH
Confidence 22 22333332 35899999998321 22345678999999999999
Q ss_pred HHHHhcC--CCEEEEecCccccccCCCCcCCCCCCCCCCCCCC-chHHHHHHHHHHHHHHHhCC----CCceEEEEecCC
Q 047227 116 DACAELK--VKRLIYTSSPSVVFDGVHGIINGNEALPYPPKHN-DFYSATKAEGEALVIKANGT----NGLLTCCIRPSS 188 (485)
Q Consensus 116 ~a~~~~~--v~r~V~~SS~~vy~~~~~~~~~~~e~~~~~~~~~-~~Y~~sK~~~E~~~~~~~~~----~g~~~~ilRp~~ 188 (485)
+++...= -.++|++||...+.. .... ..|+.+|+..+.+.+.++.+ +|+++.+++||.
T Consensus 162 ~~~~~~m~~~g~Iv~isS~~~~~~---------------~~~~~~~Y~asKaal~~l~~~la~el~~~~gIrvn~v~PG~ 226 (315)
T 2o2s_A 162 QHFGPIMNEGGSAVTLSYLAAERV---------------VPGYGGGMSSAKAALESDTRTLAWEAGQKYGVRVNAISAGP 226 (315)
T ss_dssp HHHSTTEEEEEEEEEEEEGGGTSC---------------CTTCCTTHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEECC
T ss_pred HHHHHHHhcCCEEEEEeccccccc---------------CCCccHHHHHHHHHHHHHHHHHHHHhCcccCeEEEEEeccc
Confidence 9987541 158999999766421 1122 47999999999998876543 689999999999
Q ss_pred cccCCCC--------CChHHHHHHHHcCCCeEEecCCCceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCC
Q 047227 189 IFGPGDR--------LLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNM 260 (485)
Q Consensus 189 v~Gp~~~--------~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~ 260 (485)
+..+... .+...+........ ....+..++|+|++++.++... ..-..|+.+.+.++
T Consensus 227 v~T~~~~~~~~~~~~~~~~~~~~~~~~~~---------p~~r~~~pedvA~~v~~L~s~~------~~~itG~~i~vdGG 291 (315)
T 2o2s_A 227 LKSRAASAIGKSGEKSFIDYAIDYSYNNA---------PLRRDLHSDDVGGAALFLLSPL------ARAVSGVTLYVDNG 291 (315)
T ss_dssp CCCHHHHHTTCSSSSCHHHHHHHHHHHHS---------SSCCCCCHHHHHHHHHHHTSGG------GTTCCSCEEEESTT
T ss_pred ccchhhhhccccccchhHHHHHHHHhccC---------CCCCCCCHHHHHHHHHHHhCch------hccCcCCEEEECCC
Confidence 8654100 01111111111111 1123567999999999875421 12267888888776
Q ss_pred C
Q 047227 261 E 261 (485)
Q Consensus 261 ~ 261 (485)
.
T Consensus 292 ~ 292 (315)
T 2o2s_A 292 L 292 (315)
T ss_dssp G
T ss_pred e
Confidence 4
|
| >3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415; rossmann fold, hot-DOG fold, hydratase 2 motif, peroxisomes, oxidoreductase; 2.15A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.52 E-value=3.3e-14 Score=151.07 Aligned_cols=213 Identities=16% Similarity=0.136 Sum_probs=138.0
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccC--CccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALE--PHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ 82 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~ 82 (485)
.++|++|||||+|.||+++++.|.++| ++|.+.+|....... ...........+...+.. ..+|+.|.+++.++++
T Consensus 17 l~gk~~lVTGas~GIG~aiA~~La~~G-a~Vv~~~r~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~D~~d~~~~~~~~~ 94 (613)
T 3oml_A 17 YDGRVAVVTGAGAGLGREYALLFAERG-AKVVVNDLGGTHSGDGASQRAADIVVDEIRKAGGE-AVADYNSVIDGAKVIE 94 (613)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEC--------------CHHHHHHHHHHTTCC-EEECCCCGGGHHHHHC
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCCcccccccCCHHHHHHHHHHHHHhCCe-EEEEeCCHHHHHHHHH
Confidence 467899999999999999999999999 699998873221100 000100111112212222 3479999877777665
Q ss_pred -------CCCEEEEcCCCC-------CCCCchhhhHHHHHHHHHHHHHHH----HhcCCCEEEEecCccccccCCCCcCC
Q 047227 83 -------GAEVVFHMAAPN-------SSINNHKLHHSVNVEGTKNVIDAC----AELKVKRLIYTSSPSVVFDGVHGIIN 144 (485)
Q Consensus 83 -------~~d~Vih~aa~~-------~~~~~~~~~~~~nv~~t~~ll~a~----~~~~v~r~V~~SS~~vy~~~~~~~~~ 144 (485)
+.|++||+||.. .+.++++..+++|+.|+.++.+++ ++.+..++|++||.+.+..
T Consensus 95 ~~~~~~g~iDiLVnnAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~l~~~~~p~m~~~~~g~IV~isS~a~~~~------- 167 (613)
T 3oml_A 95 TAIKAFGRVDILVNNAGILRDRSLVKTSEQDWNLVNDVHLKGSFKCTQAAFPYMKKQNYGRIIMTSSNSGIYG------- 167 (613)
T ss_dssp ----------CEECCCCCCCCCCSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEECCHHHHHC-------
T ss_pred HHHHHCCCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECCHHHcCC-------
Confidence 489999999932 133467789999999999999887 5556679999999776531
Q ss_pred CCCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCcee
Q 047227 145 GNEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVY 221 (485)
Q Consensus 145 ~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~~ 221 (485)
......|+.+|+..+.+.+.++.+ +|+++.++.|+.+- +...... +....
T Consensus 168 --------~~~~~~Y~asKaal~~lt~~la~e~~~~gI~vn~v~Pg~~t-~~~~~~~------------------~~~~~ 220 (613)
T 3oml_A 168 --------NFGQVNYTAAKMGLIGLANTVAIEGARNNVLCNVIVPTAAS-RMTEGIL------------------PDILF 220 (613)
T ss_dssp --------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC-------CCCC------------------CHHHH
T ss_pred --------CCCChHHHHHHHHHHHHHHHHHHHhCccCeEEEEEECCCCC-hhhhhcc------------------chhhh
Confidence 234578999999999998877643 58999999998542 1101110 01123
Q ss_pred ecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCC
Q 047227 222 DFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNM 260 (485)
Q Consensus 222 ~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~ 260 (485)
..+..+|+|.+++.++... ....|+.+++.++
T Consensus 221 ~~~~pedvA~~v~~L~s~~-------~~~tG~~i~vdGG 252 (613)
T 3oml_A 221 NELKPKLIAPVVAYLCHES-------CEDNGSYIESAAG 252 (613)
T ss_dssp TTCCGGGTHHHHHHTTSTT-------CCCCSCEEEEETT
T ss_pred hcCCHHHHHHHHHHhcCCC-------cCCCceEEEECCC
Confidence 3457899999988775421 1256888888776
|
| >2ptg_A Enoyl-acyl carrier reductase; apicomplexa, enoyl (acyl-carrier-P reductase, oxidoreductase; 2.60A {Eimeria tenella} | Back alignment and structure |
|---|
Probab=99.52 E-value=4.7e-14 Score=138.17 Aligned_cols=230 Identities=11% Similarity=0.007 Sum_probs=123.7
Q ss_pred CCCCEEEEEcC--CCchHHHHHHHHHhcCCceEEEeecCC---------c-cccCCccch--h---hhhhhhcCC-----
Q 047227 5 ENERLCVVTGG--RGFAARHLVEMLIRYDMFSVRIADLSD---------S-IALEPHEEQ--G---ILGEALRSG----- 62 (485)
Q Consensus 5 ~~~~~iLVtGg--tG~iG~~l~~~Ll~~G~~~V~~~~r~~---------~-~~~~~~~~~--~---~~~~~~~~~----- 62 (485)
.++|++||||| +|.||+++++.|.++| ++|.+++|.+ . ......... + .....+...
T Consensus 7 l~~k~~lVTGa~~s~GIG~aia~~la~~G-~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (319)
T 2ptg_A 7 LRGKTAFVAGVADSNGYGWAICKLLRAAG-ARVLVGTWPPVYSIFKKGLESSRFEQDSFYAQEPSSKVAAEAAEKPVDLV 85 (319)
T ss_dssp CTTCEEEEECCCCTTSHHHHHHHHHHHTT-CEEEEEECHHHHHHHHC--------------------------------C
T ss_pred cCCCEEEEeCCCCCCcHHHHHHHHHHHCC-CEEEEEeccccccchhhhhhhhhhhhhhhhhcchhhhHHHHhhhcccccc
Confidence 46789999999 8999999999999999 6898887642 0 000000000 0 000011110
Q ss_pred CeEEEEecC------------CC--------HHHHHHHh-------cCCCEEEEcCCCCC---------CCCchhhhHHH
Q 047227 63 RAHYVSFDL------------RH--------KAQVLQAL-------QGAEVVFHMAAPNS---------SINNHKLHHSV 106 (485)
Q Consensus 63 ~v~~~~~Dl------------~d--------~~~l~~~~-------~~~d~Vih~aa~~~---------~~~~~~~~~~~ 106 (485)
....+.+|+ +| ++++.+++ .+.|++||+||... ..++++..+++
T Consensus 86 ~~~~~~~d~~~~~~~~~~~Dv~~~~~~~~~d~~~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~~v 165 (319)
T 2ptg_A 86 FDKIYPLDAVFDTPQDVPPEVSSNKRYAGVGGFTISEVAEAVRADVGQIDILVHSLANGPEVTKPLLQTSRKGYLAAVSS 165 (319)
T ss_dssp CSEEEECCTTCCSGGGSCHHHHCC--CTTSCCCSHHHHHHHHHHHHSCEEEEEEEEECCSSSSSCGGGCCHHHHHHHHHH
T ss_pred ccccccccccccccccccchhcccccccccCHHHHHHHHHHHHHHcCCCCEEEECCccCCCCCCccccCCHHHHHHHHhH
Confidence 134444442 22 11233332 35899999998321 22345678999
Q ss_pred HHHHHHHHHHHHHhc--CCCEEEEecCccccccCCCCcCCCCCCCCCCCCCC-chHHHHHHHHHHHHHHHhCC----CCc
Q 047227 107 NVEGTKNVIDACAEL--KVKRLIYTSSPSVVFDGVHGIINGNEALPYPPKHN-DFYSATKAEGEALVIKANGT----NGL 179 (485)
Q Consensus 107 nv~~t~~ll~a~~~~--~v~r~V~~SS~~vy~~~~~~~~~~~e~~~~~~~~~-~~Y~~sK~~~E~~~~~~~~~----~g~ 179 (485)
|+.++.++.+++... .-.++|++||...+.. .... ..|+.+|+..+.+.+.++.+ +|+
T Consensus 166 N~~g~~~l~~~~~~~m~~~g~Iv~isS~~~~~~---------------~~~~~~~Y~asKaal~~l~~~la~el~~~~gI 230 (319)
T 2ptg_A 166 SSYSFVSLLQHFLPLMKEGGSALALSYIASEKV---------------IPGYGGGMSSAKAALESDCRTLAFEAGRARAV 230 (319)
T ss_dssp HTHHHHHHHHHHGGGEEEEEEEEEEEECC---------------------------------THHHHHHHHHHHHHHHCC
T ss_pred hhHHHHHHHHHHHHHHhcCceEEEEeccccccc---------------cCccchhhHHHHHHHHHHHHHHHHHhccccCe
Confidence 999999999998764 1158999999766421 1122 47999999999988877644 589
Q ss_pred eEEEEecCCcccCCCCCChH----HHHHHHHcCCCeEEecCCCceeecccHHHHHHHHHHHHHHhccccchhhccCCcEE
Q 047227 180 LTCCIRPSSIFGPGDRLLVP----SLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAY 255 (485)
Q Consensus 180 ~~~ilRp~~v~Gp~~~~~~~----~~~~~~~~g~~~~~~g~g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~y 255 (485)
++.+++||.+..+....... .+...... ..........+..++|+|++++.++... ..-..|+.+
T Consensus 231 rvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~-----~~~~~~p~~r~~~peevA~~v~~L~s~~------~~~itG~~i 299 (319)
T 2ptg_A 231 RVNCISAGPLKSRAASAIGKAGDKTFIDLAID-----YSEANAPLQKELESDDVGRAALFLLSPL------ARAVTGATL 299 (319)
T ss_dssp EEEEEEECCCC------------------------------------CCCHHHHHHHHHHHTSGG------GTTCCSCEE
T ss_pred eEEEEeeCCccChhhhhcccccchhhHHHHHH-----HHhccCCCCCCCCHHHHHHHHHHHhCcc------cCCccCCEE
Confidence 99999999987653221100 00000000 0001111224678999999999876421 123678899
Q ss_pred EeeCCC
Q 047227 256 FVTNME 261 (485)
Q Consensus 256 nv~~~~ 261 (485)
.+.++.
T Consensus 300 ~vdGG~ 305 (319)
T 2ptg_A 300 YVDNGL 305 (319)
T ss_dssp EESTTC
T ss_pred EECCCc
Confidence 888764
|
| >3lt0_A Enoyl-ACP reductase; triclosan, triclosan variant, oxidoredu P.falciparum; HET: NAD FT1; 1.96A {Plasmodium falciparum} SCOP: c.2.1.2 PDB: 1v35_A* 3lsy_A* 1uh5_A* 3lt1_A* 3lt2_A* 3lt4_A* 3am4_A* 3am3_A* 3am5_A* 2o2y_A* 2oos_A* 2ol4_A* 2op0_A* 2op1_A* 1vrw_A* 1zsn_A* 1zw1_A* 1zxb_A* 1zxl_A* 2foi_A* ... | Back alignment and structure |
|---|
Probab=99.44 E-value=5e-13 Score=131.34 Aligned_cols=168 Identities=10% Similarity=0.008 Sum_probs=116.0
Q ss_pred CCEEEEEcCCC--chHHHHHHHHHhcCCceEEEeecCC---------ccccCCccchhhhhhhhcCCCeEEEEecCCCH-
Q 047227 7 ERLCVVTGGRG--FAARHLVEMLIRYDMFSVRIADLSD---------SIALEPHEEQGILGEALRSGRAHYVSFDLRHK- 74 (485)
Q Consensus 7 ~~~iLVtGgtG--~iG~~l~~~Ll~~G~~~V~~~~r~~---------~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~- 74 (485)
+|++|||||++ .||.++++.|.++| ++|.+.++.+ ......... ..........+..+.+|+.+.
T Consensus 2 ~k~~lITGas~~~GIG~aiA~~la~~G-~~Vv~~~~~~~~~l~~r~~~~~~~~~~~--~~~~~~~~~~~~~~~~Dv~~~~ 78 (329)
T 3lt0_A 2 EDICFIAGIGDTNGYGWGIAKELSKRN-VKIIFGIWPPVYNIFMKNYKNGKFDNDM--IIDKDKKMNILDMLPFDASFDT 78 (329)
T ss_dssp CCEEEEECCSSSSSHHHHHHHHHHHTT-CEEEEEECHHHHHHHHHHHHTTTTTGGG--BCSSSCBCCEEEEEECCTTCSS
T ss_pred CcEEEEECCCCCCchHHHHHHHHHHCC-CEEEEEecCccccccccchHHHHHHHHH--HHhhcccccccccccccccccc
Confidence 57999999875 99999999999999 6888766543 100000000 000001123467888888776
Q ss_pred -H------------------HHHHHhc-------CCCEEEEcCCCC---------CCCCchhhhHHHHHHHHHHHHHHHH
Q 047227 75 -A------------------QVLQALQ-------GAEVVFHMAAPN---------SSINNHKLHHSVNVEGTKNVIDACA 119 (485)
Q Consensus 75 -~------------------~l~~~~~-------~~d~Vih~aa~~---------~~~~~~~~~~~~nv~~t~~ll~a~~ 119 (485)
+ ++.++++ +.|++||+||.. ...++++..+++|+.++.++.+++.
T Consensus 79 ~~~~~~~~~~~~~~Dlsd~~~v~~~~~~~~~~~g~iDilVnnAGi~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~ 158 (329)
T 3lt0_A 79 ANDIDEETKNNKRYNMLQNYTIEDVANLIHQKYGKINMLVHSLANAKEVQKDLLNTSRKGYLDALSKSSYSLISLCKYFV 158 (329)
T ss_dssp GGGCCHHHHTSHHHHTCCSCSHHHHHHHHHHHHCCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHG
T ss_pred hhhhhhhhcccccccccCHHHHHHHHHHHHHhcCCCcEEEECCcccccCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHH
Confidence 4 4444442 489999999842 1233567789999999999999987
Q ss_pred hcC--CCEEEEecCccccccCCCCcCCCCCCCCCCCCCCc-hHHHHHHHHHHHHHHHhCC----CCceEEEEecCCcccC
Q 047227 120 ELK--VKRLIYTSSPSVVFDGVHGIINGNEALPYPPKHND-FYSATKAEGEALVIKANGT----NGLLTCCIRPSSIFGP 192 (485)
Q Consensus 120 ~~~--v~r~V~~SS~~vy~~~~~~~~~~~e~~~~~~~~~~-~Y~~sK~~~E~~~~~~~~~----~g~~~~ilRp~~v~Gp 192 (485)
..= -.++|++||...+. +..... .|+.||+..+.+.+.++.+ +|+++.++.||.+-.+
T Consensus 159 p~m~~~g~Iv~isS~~~~~---------------~~~~~~~~Y~asKaal~~~~~~la~el~~~~gI~vn~v~PG~v~T~ 223 (329)
T 3lt0_A 159 NIMKPQSSIISLTYHASQK---------------VVPGYGGGMSSAKAALESDTRVLAYHLGRNYNIRINTISAGPLKSR 223 (329)
T ss_dssp GGEEEEEEEEEEECGGGTS---------------CCTTCTTTHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCH
T ss_pred HHHhhCCeEEEEeCccccC---------------CCCcchHHHHHHHHHHHHHHHHHHHHhCCccCeEEEEEecceeech
Confidence 641 14899999976542 112333 7999999999988876543 5899999999998654
|
| >2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=1.5e-11 Score=140.68 Aligned_cols=230 Identities=13% Similarity=0.027 Sum_probs=146.2
Q ss_pred CCCCEEEEEcCCCc-hHHHHHHHHHhcCCceEEEee-cCCccccCCccchhhhhhhhc--CCCeEEEEecCCCHHHHHHH
Q 047227 5 ENERLCVVTGGRGF-AARHLVEMLIRYDMFSVRIAD-LSDSIALEPHEEQGILGEALR--SGRAHYVSFDLRHKAQVLQA 80 (485)
Q Consensus 5 ~~~~~iLVtGgtG~-iG~~l~~~Ll~~G~~~V~~~~-r~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~Dl~d~~~l~~~ 80 (485)
.+++++|||||+|. ||.++++.|.++| ++|.+++ |..........+ +...+. ..++.++.+|++|.+++.++
T Consensus 650 L~gKvaLVTGASgGgIG~aIAr~LA~~G-A~VVl~~~R~~~~l~~~a~e---L~~el~~~G~~v~~v~~DVsd~esV~al 725 (1878)
T 2uv9_A 650 FQGKHALMTGAGAGSIGAEVLQGLLSGG-AKVIVTTSRFSRQVTEYYQG---IYARCGARGSQLVVVPFNQGSKQDVEAL 725 (1878)
T ss_dssp CTTCEEEEESCCTTSHHHHHHHHHHHTT-CEEEEEESSCCHHHHHHHHH---HHHHHCCTTCEEEEEECCTTCHHHHHHH
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHHCC-CEEEEEecCChHHHHHHHHH---HHHHhhccCCeEEEEEcCCCCHHHHHHH
Confidence 45689999999999 9999999999999 6888885 432210000000 111111 34688999999999988877
Q ss_pred hc-----------CCCEEEEcCCCCCC----------CCchhhhHHHHHHHHHHHHHHHHhc------CCCEEEEecCcc
Q 047227 81 LQ-----------GAEVVFHMAAPNSS----------INNHKLHHSVNVEGTKNVIDACAEL------KVKRLIYTSSPS 133 (485)
Q Consensus 81 ~~-----------~~d~Vih~aa~~~~----------~~~~~~~~~~nv~~t~~ll~a~~~~------~v~r~V~~SS~~ 133 (485)
++ +.|+|||+||.... .+++...+++|+.++.++.++++.. +..+||++||..
T Consensus 726 v~~i~~~~~~~G~~IDiLVnNAGi~~~~~~l~d~t~~~e~~~~vl~vNv~g~~~l~~a~~~lp~M~~~~~G~IVnISS~a 805 (1878)
T 2uv9_A 726 VNYIYDTKNGLGWDLDYVVPFAAIPENGREIDSIDSKSELAHRIMLTNLLRLLGAIKTQKKERGYETRPAQVILPLSPNH 805 (1878)
T ss_dssp HHHHHCSSSSCCCCCSEEEECCCCCCTTCCTTCCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCSCCEEECCEECSCS
T ss_pred HHHHHHhhcccCCCCcEEEeCcccccCCCChhhcCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhCCCCEEEEEcchh
Confidence 63 48999999994321 1345678999999999998875432 125899999975
Q ss_pred ccccCCCCcCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcc-cCCCCCChHHHHHHHHcCC
Q 047227 134 VVFDGVHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIF-GPGDRLLVPSLVAAARAGK 209 (485)
Q Consensus 134 vy~~~~~~~~~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~-Gp~~~~~~~~~~~~~~~g~ 209 (485)
.+.. ....|+.+|+..+.+.+.+... .+++++++.||.+- .+.... ...........
T Consensus 806 g~~g-----------------g~~aYaASKAAL~aLt~~laAeEla~~IrVNaVaPG~V~gT~m~~~--~~~~~~~~~~~ 866 (1878)
T 2uv9_A 806 GTFG-----------------NDGLYSESKLALETLFNRWYSESWGNYLTICGAVIGWTRGTGLMSA--NNLVAEGVEKL 866 (1878)
T ss_dssp SSSS-----------------CCSSHHHHHHHHTTHHHHHHHSTTTTTEEEEEEEECCBCCTTSCSH--HHHTHHHHHTT
T ss_pred hccC-----------------CchHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEEecceecCccccc--chhhHHHHHhc
Confidence 5421 2357999999999987654322 12999999999987 332111 11111111111
Q ss_pred CeEEecCCCceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEee--CCC--CccHHHHHHHH
Q 047227 210 SKFIIGDGNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVT--NME--SIKFWEFVSLI 272 (485)
Q Consensus 210 ~~~~~g~g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~--~~~--~~t~~el~~~i 272 (485)
+ . .....+|+|.+++.++.... ..-..|+.+.+. ++. ...+.++.+.+
T Consensus 867 p---------l-r~~sPeEVA~avlfLaSd~a-----~s~iTGq~I~VDVDGG~~~~~~l~el~~~l 918 (1878)
T 2uv9_A 867 G---------V-RTFSQQEMAFNLLGLMAPAI-----VNLCQSDPVFADLNGGLQFIPDLKGLMTKL 918 (1878)
T ss_dssp T---------C-CCBCHHHHHHHHHHHHSHHH-----HHHHTTSCEEEEESCSGGGCTTHHHHHHHH
T ss_pred C---------C-CCCCHHHHHHHHHHHhCCcc-----cccccCcEEEEEcCCCccccCCHHHHHHHH
Confidence 1 0 23378999999887754211 012457777763 332 34555655444
|
| >2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=4.2e-11 Score=137.43 Aligned_cols=199 Identities=12% Similarity=0.072 Sum_probs=134.2
Q ss_pred CCCCEEEEEcCCCc-hHHHHHHHHHhcCCceEEEee-cCCccccCCccchhhhhhhhc--CCCeEEEEecCCCHHHHHHH
Q 047227 5 ENERLCVVTGGRGF-AARHLVEMLIRYDMFSVRIAD-LSDSIALEPHEEQGILGEALR--SGRAHYVSFDLRHKAQVLQA 80 (485)
Q Consensus 5 ~~~~~iLVtGgtG~-iG~~l~~~Ll~~G~~~V~~~~-r~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~Dl~d~~~l~~~ 80 (485)
.+++++|||||+|. ||.++++.|.++| ++|.+++ |..........+ +..... ..++.++.+|++|.+++.++
T Consensus 673 l~gKvaLVTGASsGgIG~aIA~~La~~G-A~Vvl~~~R~~~~l~~~~~e---L~~~~~~~g~~v~~v~~DVsd~~sV~al 748 (1887)
T 2uv8_A 673 FKDKYVLITGAGKGSIGAEVLQGLLQGG-AKVVVTTSRFSKQVTDYYQS---IYAKYGAKGSTLIVVPFNQGSKQDVEAL 748 (1887)
T ss_dssp CTTCEEEEESCCSSSHHHHHHHHHHHTT-CEEEEEESSCCHHHHHHHHH---HHHHHCCTTCEEEEEECCTTCHHHHHHH
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHHCC-CEEEEEecCCHHHHHHHHHH---HHHHhhcCCCeEEEEEecCCCHHHHHHH
Confidence 45689999999998 9999999999999 6888874 433211000000 111111 34688999999999988877
Q ss_pred hc-------------CCCEEEEcCCCCCC----------CCchhhhHHHHHHHHHHHHHHHHhcC------CCEEEEecC
Q 047227 81 LQ-------------GAEVVFHMAAPNSS----------INNHKLHHSVNVEGTKNVIDACAELK------VKRLIYTSS 131 (485)
Q Consensus 81 ~~-------------~~d~Vih~aa~~~~----------~~~~~~~~~~nv~~t~~ll~a~~~~~------v~r~V~~SS 131 (485)
++ +.|++||+||.... .+++...+++|+.++.++.++++... -.++|++||
T Consensus 749 v~~i~~~~~~~G~G~~LDiLVNNAGi~~~~~~l~d~t~~~e~~~~v~~vNv~g~~~l~~a~~~lp~m~~~~~G~IVnISS 828 (1887)
T 2uv8_A 749 IEFIYDTEKNGGLGWDLDAIIPFAAIPEQGIELEHIDSKSEFAHRIMLTNILRMMGCVKKQKSARGIETRPAQVILPMSP 828 (1887)
T ss_dssp HHHHHSCTTTTSCCCCCSEEEECCCCCCCSBCGGGCCHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCCSCCEEEEEEECS
T ss_pred HHHHHHhccccccCCCCeEEEECCCcCCCCCChhhCCcchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhCCCCEEEEEcC
Confidence 63 48999999994321 23456789999999999999885432 148999999
Q ss_pred ccccccCCCCcCCCCCCCCCCCCCCchHHHHHHHHHHH-HHHHhCCCC--ceEEEEecCCcccCC-C--CCChHHHHHHH
Q 047227 132 PSVVFDGVHGIINGNEALPYPPKHNDFYSATKAEGEAL-VIKANGTNG--LLTCCIRPSSIFGPG-D--RLLVPSLVAAA 205 (485)
Q Consensus 132 ~~vy~~~~~~~~~~~e~~~~~~~~~~~Y~~sK~~~E~~-~~~~~~~~g--~~~~ilRp~~v~Gp~-~--~~~~~~~~~~~ 205 (485)
...+.. ....|+.+|+..+.+ .+.++...+ ++++++.||.+.+.+ . ........
T Consensus 829 ~ag~~g-----------------g~~aYaASKAAL~~Lttr~lA~ela~~IrVNaV~PG~V~tT~m~~~~~~~~~~~--- 888 (1887)
T 2uv8_A 829 NHGTFG-----------------GDGMYSESKLSLETLFNRWHSESWANQLTVCGAIIGWTRGTGLMSANNIIAEGI--- 888 (1887)
T ss_dssp CTTCSS-----------------CBTTHHHHHHHGGGHHHHHHHSSCTTTEEEEEEEECCEECC-----CCTTHHHH---
T ss_pred hHhccC-----------------CCchHHHHHHHHHHHHHHHHHHHhCCCeEEEEEEecccccccccccchhHHHHH---
Confidence 765421 235799999999998 555554433 999999999998522 1 11111111
Q ss_pred HcCCCeEEecCCCceeecccHHHHHHHHHHHHH
Q 047227 206 RAGKSKFIIGDGNNVYDFTYVANVAHAHICAER 238 (485)
Q Consensus 206 ~~g~~~~~~g~g~~~~~~i~v~D~a~a~~~~~~ 238 (485)
...+ . .+..++|+|.+++.++.
T Consensus 889 -~~~p---------l-r~~sPEEVA~avlfLaS 910 (1887)
T 2uv8_A 889 -EKMG---------V-RTFSQKEMAFNLLGLLT 910 (1887)
T ss_dssp -HTTS---------C-CCEEHHHHHHHHHGGGS
T ss_pred -HhcC---------C-CCCCHHHHHHHHHHHhC
Confidence 1111 0 23368999999887654
|
| >2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.27 E-value=8.8e-12 Score=138.51 Aligned_cols=166 Identities=13% Similarity=0.087 Sum_probs=117.2
Q ss_pred CCCCEEEEEcCCCc-hHHHHHHHHHhcCCceEEEee-cCCccccCCccchhhhhhhhc--CCCeEEEEecCCCHHHHHHH
Q 047227 5 ENERLCVVTGGRGF-AARHLVEMLIRYDMFSVRIAD-LSDSIALEPHEEQGILGEALR--SGRAHYVSFDLRHKAQVLQA 80 (485)
Q Consensus 5 ~~~~~iLVtGgtG~-iG~~l~~~Ll~~G~~~V~~~~-r~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~Dl~d~~~l~~~ 80 (485)
.+++++|||||+|. ||.++++.|+++| ++|.+++ |..........+ +..... ..++.++.+|++|.+++.++
T Consensus 474 L~GKvALVTGASgGGIGrAIAr~LA~~G-A~VVL~~~R~~e~lee~a~e---L~ael~a~Ga~V~vV~~DVTD~esVeaL 549 (1688)
T 2pff_A 474 FKDKYVLITGAGKGSIGAEVLQGLLQGG-AKVVVTTSRFSKQVTDYYQS---IYAKYGAKGSTLIVVPFNQGSKQDVEAL 549 (1688)
T ss_dssp CCSCCEEECSCSSSSTHHHHHHHHHHHT-CEEEEEESSCSTTTTTHHHH---TTTTTCCTTCEEEEEECCSSSTTHHHHH
T ss_pred cCCCEEEEECCChHHHHHHHHHHHHHCc-CEEEEEeCCCHHHHHHHHHH---HHHHhhcCCCeEEEEEeCCCCHHHHHHH
Confidence 45678999999998 9999999999999 6888874 443211110000 111111 24688899999999888776
Q ss_pred hc-------------CCCEEEEcCCCCCC----------CCchhhhHHHHHHHHHHHHHHHHhcC------CCEEEEecC
Q 047227 81 LQ-------------GAEVVFHMAAPNSS----------INNHKLHHSVNVEGTKNVIDACAELK------VKRLIYTSS 131 (485)
Q Consensus 81 ~~-------------~~d~Vih~aa~~~~----------~~~~~~~~~~nv~~t~~ll~a~~~~~------v~r~V~~SS 131 (485)
++ +.|+|||+||.... .+++...+++|+.++.++.++++... -.++|++||
T Consensus 550 Ve~I~e~~~~~GfG~~IDILVNNAGI~~~g~~l~dlt~s~Ed~~rv~~VNL~G~~~Ltqaa~~lp~M~krggGrIVnISS 629 (1688)
T 2pff_A 550 IEFIYDTEKNGGLGWDLDAIIPFAAIPEQGIELEHIDSKSEFAHRIMLTNILRMMGCVKKQKSARGIETRPAQVILPMSP 629 (1688)
T ss_dssp HHHHHSCTTSSSCCCCCCEEECCCCCCCCSBCSSSCTTHHHHHHHHTTHHHHHHHHHHHHHHHHHTCTTSCEEECCCCCS
T ss_pred HHHHHHhccccccCCCCeEEEECCCcCCCCCChhhCCCCHHHHHHHHHHHHHHHHHHHHHHHhChHHHhCCCCEEEEEEC
Confidence 52 48999999994321 12356789999999999999884321 248999999
Q ss_pred ccccccCCCCcCCCCCCCCCCCCCCchHHHHHHHHHHH-HHHHhCCCC--ceEEEEecCCccc
Q 047227 132 PSVVFDGVHGIINGNEALPYPPKHNDFYSATKAEGEAL-VIKANGTNG--LLTCCIRPSSIFG 191 (485)
Q Consensus 132 ~~vy~~~~~~~~~~~e~~~~~~~~~~~Y~~sK~~~E~~-~~~~~~~~g--~~~~ilRp~~v~G 191 (485)
...+. .....|+.||+..+.+ .+.++...+ ++++++.||.+-|
T Consensus 630 iAG~~-----------------Gg~saYaASKAAL~aLttrsLAeEla~~IRVNaVaPG~V~T 675 (1688)
T 2pff_A 630 NHGTF-----------------GGDGMYSESKLSLETLFNRWHSESWANQLTVCGAIIGWTRG 675 (1688)
T ss_dssp CTTTS-----------------SCBTTHHHHHHHHTHHHHHTTTSSCTTTEECCCCCCCCCCC
T ss_pred hHhcc-----------------CCchHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEEECcCcC
Confidence 65542 1245799999999998 444444332 8999999999875
|
| >2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis} | Back alignment and structure |
|---|
Probab=99.22 E-value=2.2e-10 Score=121.24 Aligned_cols=224 Identities=15% Similarity=0.157 Sum_probs=145.2
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhh-cCCCeEEEEecC-CCHHHHHH-H-
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEAL-RSGRAHYVSFDL-RHKAQVLQ-A- 80 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl-~d~~~l~~-~- 80 (485)
.++|.+|||||++-||+++++.|.++| ++|.+.++... ++ ...... ...++..+.+|+ .+.+++.+ +
T Consensus 320 l~gkvalVTGas~GIG~a~A~~la~~G-a~Vv~~~~~~~------~~--~~~~i~~~g~~~~~~~~Dv~~~~~~~~~~~~ 390 (604)
T 2et6_A 320 LKDKVVLITGAGAGLGKEYAKWFAKYG-AKVVVNDFKDA------TK--TVDEIKAAGGEAWPDQHDVAKDSEAIIKNVI 390 (604)
T ss_dssp CTTCEEEESSCSSHHHHHHHHHHHHTT-CEEEEECSSCC------HH--HHHHHHHTTCEEEEECCCHHHHHHHHHHHHH
T ss_pred cCCCeEEEECcchHHHHHHHHHHHHCC-CEEEEEeCccH------HH--HHHHHHhcCCeEEEEEcChHHHHHHHHHHHH
Confidence 456899999999999999999999999 68888876321 11 111111 123466677788 55544322 2
Q ss_pred --hcCCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHHH----hcCCCEEEEecCccccccCCCCcCCCCC
Q 047227 81 --LQGAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDACA----ELKVKRLIYTSSPSVVFDGVHGIINGNE 147 (485)
Q Consensus 81 --~~~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~~----~~~v~r~V~~SS~~vy~~~~~~~~~~~e 147 (485)
+.+.|++||+||... +.++++..+++|+.|+.++.+++. +.+-.++|++||.....
T Consensus 391 ~~~G~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~IVnisS~ag~~----------- 459 (604)
T 2et6_A 391 DKYGTIDILVNNAGILRDRSFAKMSKQEWDSVQQVHLIGTFNLSRLAWPYFVEKQFGRIINITSTSGIY----------- 459 (604)
T ss_dssp HHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHS-----------
T ss_pred HhcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECChhhcc-----------
Confidence 235999999999321 234577899999999988877754 34456999999976542
Q ss_pred CCCCCCCCCchHHHHHHHHHHHHHHHhC---CCCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCceeecc
Q 047227 148 ALPYPPKHNDFYSATKAEGEALVIKANG---TNGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFT 224 (485)
Q Consensus 148 ~~~~~~~~~~~Y~~sK~~~E~~~~~~~~---~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i 224 (485)
+......|+.||+....+.+.++. .+|+++.++.|+. - ......... . ...+..
T Consensus 460 ----~~~~~~~Y~asKaal~~lt~~la~El~~~gIrVn~v~PG~-~----T~m~~~~~~----~----------~~~~~~ 516 (604)
T 2et6_A 460 ----GNFGQANYSSSKAGILGLSKTMAIEGAKNNIKVNIVAPHA-E----TAMTLSIMR----E----------QDKNLY 516 (604)
T ss_dssp ----CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECC-C----CCC-----------------------CCSS
T ss_pred ----CCCCChhHHHHHHHHHHHHHHHHHHhCccCeEEEEEcCCC-C----CccccccCc----h----------hhccCC
Confidence 123456899999999988877654 3689999999983 1 111111100 0 011245
Q ss_pred cHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCC-----------------CccHHHHHHHHHHHcCC
Q 047227 225 YVANVAHAHICAERALASEVTVAEKAAGQAYFVTNME-----------------SIKFWEFVSLILEGLGY 278 (485)
Q Consensus 225 ~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~-----------------~~t~~el~~~i~~~~g~ 278 (485)
..+|+|.+++.++. +. .. ..|+.+.+.++. ..+..++.+...+....
T Consensus 517 ~pe~vA~~v~~L~s---~~---~~-itG~~~~vdGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 580 (604)
T 2et6_A 517 HADQVAPLLVYLGT---DD---VP-VTGETFEIGGGWIGNTRWQRAKGAVSHDEHTTVEFIKEHLNEITDF 580 (604)
T ss_dssp CGGGTHHHHHHTTS---TT---CC-CCSCEEEEETTEEEEEEEEECCCEECCSSSCCHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHhC---Cc---cC-CCCcEEEECCCeeEeeeeeccccccCCCCCCCHHHHHHHHHHHhcc
Confidence 78999999887643 11 22 677888776652 34566666666655543
|
| >3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa} | Back alignment and structure |
|---|
Probab=99.22 E-value=4e-11 Score=130.70 Aligned_cols=167 Identities=18% Similarity=0.221 Sum_probs=126.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHH-hcCCceEEEeecCCccccCCccchhhhhhhh-cCCCeEEEEecCCCHHHHHHHhcC
Q 047227 6 NERLCVVTGGRGFAARHLVEMLI-RYDMFSVRIADLSDSIALEPHEEQGILGEAL-RSGRAHYVSFDLRHKAQVLQALQG 83 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll-~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~~ 83 (485)
+++.+|||||+|-||..++++|. ++|..+|.+++|+........+ .....- ...++.++.+|++|++++.++++.
T Consensus 529 ~~~~~lItGg~~GlG~aiA~~la~~~Ga~~vvl~~R~~~~~~~~~~---~~~~l~~~G~~v~~~~~Dvsd~~~v~~~~~~ 605 (795)
T 3slk_A 529 AAGTVLVTGGTGALGAEVARHLVIERGVRNLVLVSRRGPAASGAAE---LVAQLTAYGAEVSLQACDVADRETLAKVLAS 605 (795)
T ss_dssp TTSEEEEETTTSHHHHHHHHHHHHTSSCCEEEEEESSGGGSTTHHH---HHHHHHHTTCEEEEEECCTTCHHHHHHHHHT
T ss_pred cccceeeccCCCCcHHHHHHHHHHHcCCcEEEEeccCccchHHHHH---HHHHHHhcCCcEEEEEeecCCHHHHHHHHHH
Confidence 46899999999999999999999 7894368888887432211111 111111 245688999999999999998853
Q ss_pred ------CCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCccccccCCCCcCCCCCCCC
Q 047227 84 ------AEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVVFDGVHGIINGNEALP 150 (485)
Q Consensus 84 ------~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy~~~~~~~~~~~e~~~ 150 (485)
.|.|||+|+... +.++++..+++|+.|+.++.+++.. .. +||++||.+.+..
T Consensus 606 ~~~~~~id~lVnnAGv~~~~~~~~~t~e~~~~~~~~nv~G~~~l~~~~~~-~l-~iV~~SS~ag~~g------------- 670 (795)
T 3slk_A 606 IPDEHPLTAVVHAAGVLDDGVSESLTVERLDQVLRPKVDGARNLLELIDP-DV-ALVLFSSVSGVLG------------- 670 (795)
T ss_dssp SCTTSCEEEEEECCCCCCCCCGGGCCHHHHHHHHCCCCCHHHHHHHHSCT-TS-EEEEEEETHHHHT-------------
T ss_pred HHHhCCCEEEEECCCcCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHHhh-CC-EEEEEccHHhcCC-------------
Confidence 699999999422 2345678899999999999998832 34 8999999776531
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHhCCCCceEEEEecCCcccCC
Q 047227 151 YPPKHNDFYSATKAEGEALVIKANGTNGLLTCCIRPSSIFGPG 193 (485)
Q Consensus 151 ~~~~~~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~ 193 (485)
......|+.+|...+.+.+++.. .|++++++.||.+-.++
T Consensus 671 --~~g~~~YaAaka~~~alA~~~~~-~Gi~v~sI~pG~v~t~g 710 (795)
T 3slk_A 671 --SGGQGNYAAANSFLDALAQQRQS-RGLPTRSLAWGPWAEHG 710 (795)
T ss_dssp --CSSCHHHHHHHHHHHHHHHHHHH-TTCCEEEEEECCCSCCC
T ss_pred --CCCCHHHHHHHHHHHHHHHHHHH-cCCeEEEEECCeECcch
Confidence 23567899999999888887764 69999999999886553
|
| >2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis} | Back alignment and structure |
|---|
Probab=99.21 E-value=2.1e-10 Score=121.33 Aligned_cols=235 Identities=16% Similarity=0.146 Sum_probs=144.0
Q ss_pred CCC-CCCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccC-Cc-cchhhhhhhhcCCCeEEEEecCCCH---
Q 047227 1 MSG-EENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALE-PH-EEQGILGEALRSGRAHYVSFDLRHK--- 74 (485)
Q Consensus 1 M~~-~~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~-~~-~~~~~~~~~~~~~~v~~~~~Dl~d~--- 74 (485)
|+. ..++|.+|||||++-||+++++.|.++| ++|.+.++....... .. +........+...+.+ ..+|+.|.
T Consensus 1 m~~~~l~gkvalVTGas~GIG~a~A~~la~~G-a~Vv~~~~~~~~~~~gr~~~~~~~~~~~i~~~g~~-~~~d~~d~~~~ 78 (604)
T 2et6_A 1 MSPVDFKDKVVIITGAGGGLGKYYSLEFAKLG-AKVVVNDLGGALNGQGGNSKAADVVVDEIVKNGGV-AVADYNNVLDG 78 (604)
T ss_dssp -CCCCCTTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEECC-----------CHHHHHHHHHHHTTCE-EEEECCCTTCH
T ss_pred CCCCCCCCCEEEEeCCCcHHHHHHHHHHHHcC-CEEEEEeCCccccccccchHHHHHHHHHHHhcCCe-EEEEcCCHHHH
Confidence 543 4567899999999999999999999999 689888875421000 00 0000011112111212 22465554
Q ss_pred HHH-HHH---hcCCCEEEEcCCCC-------CCCCchhhhHHHHHHHHHHHHHHHH----hcCCCEEEEecCccccccCC
Q 047227 75 AQV-LQA---LQGAEVVFHMAAPN-------SSINNHKLHHSVNVEGTKNVIDACA----ELKVKRLIYTSSPSVVFDGV 139 (485)
Q Consensus 75 ~~l-~~~---~~~~d~Vih~aa~~-------~~~~~~~~~~~~nv~~t~~ll~a~~----~~~v~r~V~~SS~~vy~~~~ 139 (485)
+.+ .++ +.+.|++||+||.. .+.++++..+++|+.|+.++.+++. +.+-.++|++||......
T Consensus 79 ~~~v~~~~~~~G~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~a~~p~m~~~~~G~IVnisS~ag~~~-- 156 (604)
T 2et6_A 79 DKIVETAVKNFGTVHVIINNAGILRDASMKKMTEKDYKLVIDVHLNGAFAVTKAAWPYFQKQKYGRIVNTSSPAGLYG-- 156 (604)
T ss_dssp HHHHHHHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHC--
T ss_pred HHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECCHHHcCC--
Confidence 322 222 23599999999932 1234577899999999988877654 344569999999765421
Q ss_pred CCcCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhC---CCCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecC
Q 047227 140 HGIINGNEALPYPPKHNDFYSATKAEGEALVIKANG---TNGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGD 216 (485)
Q Consensus 140 ~~~~~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~---~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~ 216 (485)
......|+.+|...+.+.+.++. .+|+++.++.|+ +- .. +.. ...+
T Consensus 157 -------------~~~~~~Y~asKaal~~lt~~la~El~~~gIrVn~v~Pg-~~----T~----m~~---~~~~------ 205 (604)
T 2et6_A 157 -------------NFGQANYASAKSALLGFAETLAKEGAKYNIKANAIAPL-AR----SR----MTE---SIMP------ 205 (604)
T ss_dssp -------------CTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC-CC----CH----HHH---TTSC------
T ss_pred -------------CCCchHHHHHHHHHHHHHHHHHHHhCccCeEEEEEccC-Cc----Cc----ccc---ccCC------
Confidence 22456899999999998887664 368999999996 21 11 111 0000
Q ss_pred CCceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCC------------------CCccHHHHHHHHHHHcCC
Q 047227 217 GNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNM------------------ESIKFWEFVSLILEGLGY 278 (485)
Q Consensus 217 g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~------------------~~~t~~el~~~i~~~~g~ 278 (485)
.........+|+|.+++.++... ....|+.+.+.++ ...+..++.+.+.+....
T Consensus 206 -~~~~~~~~pe~vA~~v~~L~s~~-------~~itG~~~~vdgG~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 277 (604)
T 2et6_A 206 -PPMLEKLGPEKVAPLVLYLSSAE-------NELTGQFFEVAAGFYAQIRWERSGGVLFKPDQSFTAEVVAKRFSEILDY 277 (604)
T ss_dssp -HHHHTTCSHHHHHHHHHHHTSSS-------CCCCSCEEEEETTEEEEEEEEECCCEECCSSTTCCHHHHHHHHHHHTCC
T ss_pred -hhhhccCCHHHHHHHHHHHhCCc-------ccCCCCEEEECCCeEEEEEEEeccceecCCCCCCCHHHHHHHHHHhhch
Confidence 01112357899999998775421 1145677766553 345678887777766543
|
| >3zu3_A Putative reductase YPO4104/Y4119/YP_4011; oxidoreductase, fatty acid biosynthesis II, short-chain dehydrogenase reductase superfamily; HET: NAI; 1.80A {Yersinia pestis} PDB: 3zu4_A* 3zu5_A* 3zu2_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=6.7e-10 Score=109.64 Aligned_cols=174 Identities=9% Similarity=-0.097 Sum_probs=118.3
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHh-cCCceEEEeecCCccccCCccchhh-----hhhhh--cCCCeEEEEecCCCHHH
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIR-YDMFSVRIADLSDSIALEPHEEQGI-----LGEAL--RSGRAHYVSFDLRHKAQ 76 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~-~G~~~V~~~~r~~~~~~~~~~~~~~-----~~~~~--~~~~v~~~~~Dl~d~~~ 76 (485)
..+|++|||||++-||.++++.|.+ .| ..|.++++............+| ..... ....+..+.+|++|+++
T Consensus 45 ~~gKvaLVTGas~GIG~AiA~~LA~g~G-A~Vv~~~~~~~~~~~~~~~~gwyn~~~~~~~~~~~G~~a~~i~~Dvtd~~~ 123 (405)
T 3zu3_A 45 NGPKRVLVIGASTGYGLAARITAAFGCG-ADTLGVFFERPGEEGKPGTSGWYNSAAFHKFAAQKGLYAKSINGDAFSDEI 123 (405)
T ss_dssp TCCSEEEEESCSSHHHHHHHHHHHHHHC-CEEEEEECCCCCBTTBCCCHHHHHHHHHHHHHHHTTCCEEEEESCTTSHHH
T ss_pred CCCCEEEEeCcchHHHHHHHHHHHHhcC-CEEEEEeCCchhhhhhcccccchhHHHHHHHHHhcCCceEEEECCCCCHHH
Confidence 4578999999999999999999999 99 6898888765422111000000 11111 23467889999999988
Q ss_pred HHHHhc-------CCCEEEEcCCCC-----------------------------------------CCCCchhhhHHHHH
Q 047227 77 VLQALQ-------GAEVVFHMAAPN-----------------------------------------SSINNHKLHHSVNV 108 (485)
Q Consensus 77 l~~~~~-------~~d~Vih~aa~~-----------------------------------------~~~~~~~~~~~~nv 108 (485)
+.++++ +.|++||+||.. .+.++++..+++|.
T Consensus 124 v~~~v~~i~~~~G~IDiLVNNAG~~~r~~p~tG~~~~s~~~pig~~~~~~~~d~~~~~~~~~~i~~~t~ee~~~~v~Vn~ 203 (405)
T 3zu3_A 124 KQLTIDAIKQDLGQVDQVIYSLASPRRTHPKTGEVFNSALKPIGNAVNLRGLDTDKEVIKESVLQPATQSEIDSTVAVMG 203 (405)
T ss_dssp HHHHHHHHHHHTSCEEEEEECCCCSEEECTTTCCEEECCCCCSSSCEEEEEEETTTTEEEEEEECCCCHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcCCCCEEEEcCccccccCccccccccccccccccccccccccccccccccccCCCCCHHHHHHHHHhhc
Confidence 877764 489999999842 01224556777787
Q ss_pred HHHH-HHHHHHHhcC----CCEEEEecCccccccCCCCcCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhC---CC-Cc
Q 047227 109 EGTK-NVIDACAELK----VKRLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANG---TN-GL 179 (485)
Q Consensus 109 ~~t~-~ll~a~~~~~----v~r~V~~SS~~vy~~~~~~~~~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~---~~-g~ 179 (485)
.+.. .+.+++.... -.++|.+||...... .|......|+.+|...+.+.+.++. .. |+
T Consensus 204 ~~~~~~~~~~~~~~~m~~~gG~IVniSSi~~~~~-------------~p~~~~~aY~AaKaal~~ltrsLA~Ela~~~GI 270 (405)
T 3zu3_A 204 GEDWQMWIDALLDAGVLAEGAQTTAFTYLGEKIT-------------HDIYWNGSIGAAKKDLDQKVLAIRESLAAHGGG 270 (405)
T ss_dssp SHHHHHHHHHHHHHTCEEEEEEEEEEECCCCGGG-------------TTTTTTSHHHHHHHHHHHHHHHHHHHHHTTTSC
T ss_pred hhHHHHHHHHHHHHhhhhCCcEEEEEeCchhhCc-------------CCCccchHHHHHHHHHHHHHHHHHHHhCcccCe
Confidence 7665 4555544322 147999998654310 0112237899999999998877654 35 89
Q ss_pred eEEEEecCCcccC
Q 047227 180 LTCCIRPSSIFGP 192 (485)
Q Consensus 180 ~~~ilRp~~v~Gp 192 (485)
++.++.|+.+--+
T Consensus 271 RVNaVaPG~i~T~ 283 (405)
T 3zu3_A 271 DARVSVLKAVVSQ 283 (405)
T ss_dssp EEEEEECCCCCCH
T ss_pred EEEEEEeCCCcCc
Confidence 9999999988654
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=99.15 E-value=1.6e-10 Score=95.07 Aligned_cols=99 Identities=19% Similarity=0.130 Sum_probs=78.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCCC
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGAE 85 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~d 85 (485)
++|+|+|+|+ |++|+.+++.|.+.|.++|++++|.+.. ...+...++..+.+|+.|.+.+.++++++|
T Consensus 4 ~~~~v~I~G~-G~iG~~~~~~l~~~g~~~v~~~~r~~~~-----------~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d 71 (118)
T 3ic5_A 4 MRWNICVVGA-GKIGQMIAALLKTSSNYSVTVADHDLAA-----------LAVLNRMGVATKQVDAKDEAGLAKALGGFD 71 (118)
T ss_dssp TCEEEEEECC-SHHHHHHHHHHHHCSSEEEEEEESCHHH-----------HHHHHTTTCEEEECCTTCHHHHHHHTTTCS
T ss_pred CcCeEEEECC-CHHHHHHHHHHHhCCCceEEEEeCCHHH-----------HHHHHhCCCcEEEecCCCHHHHHHHHcCCC
Confidence 4579999999 9999999999999994589999886541 111224578899999999999999999999
Q ss_pred EEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecC
Q 047227 86 VVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSS 131 (485)
Q Consensus 86 ~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS 131 (485)
+|||+++.. .+.+++++|.+.|++++.+.++
T Consensus 72 ~vi~~~~~~---------------~~~~~~~~~~~~g~~~~~~~~~ 102 (118)
T 3ic5_A 72 AVISAAPFF---------------LTPIIAKAAKAAGAHYFDLTED 102 (118)
T ss_dssp EEEECSCGG---------------GHHHHHHHHHHTTCEEECCCSC
T ss_pred EEEECCCch---------------hhHHHHHHHHHhCCCEEEecCc
Confidence 999998521 1357899999999866654443
|
| >3s8m_A Enoyl-ACP reductase; rossmann fold, oxidoreductase, NADH binding, fatty acid SYNT enoyl-ACP; 1.60A {Xanthomonas oryzae PV} | Back alignment and structure |
|---|
Probab=99.13 E-value=4.3e-10 Score=112.05 Aligned_cols=174 Identities=11% Similarity=-0.029 Sum_probs=116.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHh-cCCceEEEeecCCccccCCccchhh-----hhhhh--cCCCeEEEEecCCCHHHH
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIR-YDMFSVRIADLSDSIALEPHEEQGI-----LGEAL--RSGRAHYVSFDLRHKAQV 77 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~-~G~~~V~~~~r~~~~~~~~~~~~~~-----~~~~~--~~~~v~~~~~Dl~d~~~l 77 (485)
.+|++|||||++-||.++++.|.+ .| .+|.+++|............++ +.... ....+..+.+|++|++++
T Consensus 60 ~gKvaLVTGASsGIG~AiA~~LA~~~G-A~Vv~~~r~~~~~~~~~~~ag~~n~~a~~~~~~~~G~~a~~i~~Dvtd~~~v 138 (422)
T 3s8m_A 60 GPKKVLVIGASSGYGLASRITAAFGFG-ADTLGVFFEKPGTASKAGTAGWYNSAAFDKHAKAAGLYSKSINGDAFSDAAR 138 (422)
T ss_dssp SCSEEEEESCSSHHHHHHHHHHHHHHC-CEEEEEECCCCCCSSSCCCHHHHHHHHHHHHHHHTTCCEEEEESCTTSHHHH
T ss_pred CCCEEEEECCChHHHHHHHHHHHHhCC-CEEEEEeCCchhhhhhhcccccchhHHHHHHHHhcCCcEEEEEecCCCHHHH
Confidence 468999999999999999999999 99 6999888865432211000000 11111 234688899999999877
Q ss_pred HHHhc--------CCCEEEEcCCCC-----------------------------------------CCCCchhhhHHHHH
Q 047227 78 LQALQ--------GAEVVFHMAAPN-----------------------------------------SSINNHKLHHSVNV 108 (485)
Q Consensus 78 ~~~~~--------~~d~Vih~aa~~-----------------------------------------~~~~~~~~~~~~nv 108 (485)
.++++ +.|++||+||.. .+.++++..+++|.
T Consensus 139 ~~~v~~i~~~~~G~IDiLVNNAG~~~r~~p~~G~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~t~e~~~~~v~Vn~ 218 (422)
T 3s8m_A 139 AQVIELIKTEMGGQVDLVVYSLASPVRKLPGSGEVKRSALKPIGQTYTATAIDTNKDTIIQASIEPASAQEIEDTITVMG 218 (422)
T ss_dssp HHHHHHHHHHSCSCEEEEEECCCCSEEECTTTCCEEECCCCCSSSCEEEEEEETTTTEEEEEEECCCCHHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCCCCEEEEcCccccccccccccccccccccccccccccccccccccccccccCCCCHHHHHHHHHhhc
Confidence 66653 379999999841 01123344566666
Q ss_pred HHHH-HHHHHHHhcC----CCEEEEecCccccccCCCCcCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhC---CCCce
Q 047227 109 EGTK-NVIDACAELK----VKRLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANG---TNGLL 180 (485)
Q Consensus 109 ~~t~-~ll~a~~~~~----v~r~V~~SS~~vy~~~~~~~~~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~---~~g~~ 180 (485)
.++. .+..++.... -.++|.+||...... .|......|+.||...+.+.+.++. .+|++
T Consensus 219 ~~~~~~~~~a~~~~~m~~~gG~IVniSSi~g~~~-------------~p~~~~~aY~ASKaAl~~lTrsLA~Ela~~GIR 285 (422)
T 3s8m_A 219 GQDWELWIDALEGAGVLADGARSVAFSYIGTEIT-------------WPIYWHGALGKAKVDLDRTAQRLNARLAKHGGG 285 (422)
T ss_dssp SHHHHHHHHHHHHTTCEEEEEEEEEEEECCCGGG-------------HHHHTSHHHHHHHHHHHHHHHHHHHHHHTTTCE
T ss_pred hhHHHHHHHHHHHHHHhhCCCEEEEEeCchhhcc-------------CCCccchHHHHHHHHHHHHHHHHHHHhCccCEE
Confidence 5554 5556554332 147999998654310 0111236799999999998887654 36899
Q ss_pred EEEEecCCcccCC
Q 047227 181 TCCIRPSSIFGPG 193 (485)
Q Consensus 181 ~~ilRp~~v~Gp~ 193 (485)
+.++.||.+--+.
T Consensus 286 VNaVaPG~i~T~~ 298 (422)
T 3s8m_A 286 ANVAVLKSVVTQA 298 (422)
T ss_dssp EEEEEECCCCCTT
T ss_pred EEEEEcCCCcChh
Confidence 9999999987654
|
| >4eue_A Putative reductase CA_C0462; TER, biofuel, synthetic biology, catalytic mechan substrate specificity, oxidoreductase; HET: NAI; 2.00A {Clostridium acetobutylicum} PDB: 4euf_A* 4euh_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=1.1e-09 Score=109.76 Aligned_cols=174 Identities=9% Similarity=-0.092 Sum_probs=116.2
Q ss_pred CCCCEEEEEcCCCchHHH--HHHHHHhcCCceEEEeecCCccccCCccc-----hhhhhhhh--cCCCeEEEEecCCCHH
Q 047227 5 ENERLCVVTGGRGFAARH--LVEMLIRYDMFSVRIADLSDSIALEPHEE-----QGILGEAL--RSGRAHYVSFDLRHKA 75 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~--l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~-----~~~~~~~~--~~~~v~~~~~Dl~d~~ 75 (485)
..+|++|||||++-||.+ +++.|.++| ++|.+++|........... ...+.... ...++..+.+|++|.+
T Consensus 58 ~~gK~aLVTGassGIG~A~aia~ala~~G-a~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dvtd~~ 136 (418)
T 4eue_A 58 RGPKKVLIVGASSGFGLATRISVAFGGPE-AHTIGVSYETGATDRRIGTAGWYNNIFFKEFAKKKGLVAKNFIEDAFSNE 136 (418)
T ss_dssp CCCSEEEEESCSSHHHHHHHHHHHHSSSC-CEEEEEECCCCCCSSCCCCHHHHHHHHHHHHHHHTTCCEEEEESCTTCHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHHhCC-CEEEEEecCcchhhhcccccccchHHHHHHHHHHcCCcEEEEEeeCCCHH
Confidence 457899999999999999 999999999 6999888865432211000 00111111 2346889999999998
Q ss_pred HHHHHhc-------CCCEEEEcCCCC-------------C----------------------------CCCchhhhHHHH
Q 047227 76 QVLQALQ-------GAEVVFHMAAPN-------------S----------------------------SINNHKLHHSVN 107 (485)
Q Consensus 76 ~l~~~~~-------~~d~Vih~aa~~-------------~----------------------------~~~~~~~~~~~n 107 (485)
++.++++ +.|++||+||.. . ..+++...+++|
T Consensus 137 ~v~~~v~~i~~~~G~IDiLVnNAG~~~r~~~~~g~~~~s~~~p~~~~~~~~~~d~~~~~~~~~~~~~~t~e~~~~~~~vn 216 (418)
T 4eue_A 137 TKDKVIKYIKDEFGKIDLFVYSLAAPRRKDYKTGNVYTSRIKTILGDFEGPTIDVERDEITLKKVSSASIEEIEETRKVM 216 (418)
T ss_dssp HHHHHHHHHHHTTCCEEEEEECCCCSEEECTTTCCEEECCCCBSSSCEEEEEEETTTTEEEEEEECBCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCEEEECCcccccccccccccccccccccccccccccccccccccccccccCCCHHHHHHHHHHh
Confidence 8777664 389999999842 0 112233455555
Q ss_pred HHHHH-HHHHHHHhcCC----CEEEEecCccccccCCCCcCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhCC----CC
Q 047227 108 VEGTK-NVIDACAELKV----KRLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANGT----NG 178 (485)
Q Consensus 108 v~~t~-~ll~a~~~~~v----~r~V~~SS~~vy~~~~~~~~~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~----~g 178 (485)
..+.. .++.++...+. .++|.+||..... +.|......|+.+|+..+.+.+.++.+ .|
T Consensus 217 ~~~~~~~~~~~l~~~~~~~~gg~IV~iSSi~~~~-------------~~p~~~~~aY~ASKaAL~~ltrsLA~ELa~~~G 283 (418)
T 4eue_A 217 GGEDWQEWCEELLYEDCFSDKATTIAYSYIGSPR-------------TYKIYREGTIGIAKKDLEDKAKLINEKLNRVIG 283 (418)
T ss_dssp SSHHHHHHHHHHHHTTCEEEEEEEEEEECCCCGG-------------GTTTTTTSHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHhhhcCCcEEEEEeCchhcC-------------CCCccccHHHHHHHHHHHHHHHHHHHHhCCccC
Confidence 55444 45555544331 4789998865431 011223378999999999988877643 58
Q ss_pred ceEEEEecCCcccC
Q 047227 179 LLTCCIRPSSIFGP 192 (485)
Q Consensus 179 ~~~~ilRp~~v~Gp 192 (485)
+++.++.||.+--+
T Consensus 284 IrVN~V~PG~v~T~ 297 (418)
T 4eue_A 284 GRAFVSVNKALVTK 297 (418)
T ss_dssp CEEEEEECCCCCCH
T ss_pred eEEEEEECCcCcCh
Confidence 99999999998654
|
| >1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A | Back alignment and structure |
|---|
Probab=99.08 E-value=2.4e-11 Score=119.00 Aligned_cols=175 Identities=13% Similarity=0.128 Sum_probs=111.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCc------eEEEeecC----CccccCCccchhhhhhhhcCCCeEEEEecCCCHH
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMF------SVRIADLS----DSIALEPHEEQGILGEALRSGRAHYVSFDLRHKA 75 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~------~V~~~~r~----~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~ 75 (485)
+.|||+||||+||+|++++..|+.+|.. +|+++|+. ..... +...+ +......+ ..|+....
T Consensus 4 ~~~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~~~~~~~~~~------g~~~d-l~~~~~~~-~~~i~~~~ 75 (329)
T 1b8p_A 4 TPMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKALQ------GVMME-IDDCAFPL-LAGMTAHA 75 (329)
T ss_dssp CCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCSCHHHHHHHH------HHHHH-HHTTTCTT-EEEEEEES
T ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCCCccccccch------hhHHH-Hhhhcccc-cCcEEEec
Confidence 3589999999999999999999998842 78888876 21000 00011 11110111 13444434
Q ss_pred HHHHHhcCCCEEEEcCCCC-CCCCchhhhHHHHHHHHHHHHHHHHhcC-CC-EEEEecCccccccCCCCcCCCCCCCCCC
Q 047227 76 QVLQALQGAEVVFHMAAPN-SSINNHKLHHSVNVEGTKNVIDACAELK-VK-RLIYTSSPSVVFDGVHGIINGNEALPYP 152 (485)
Q Consensus 76 ~l~~~~~~~d~Vih~aa~~-~~~~~~~~~~~~nv~~t~~ll~a~~~~~-v~-r~V~~SS~~vy~~~~~~~~~~~e~~~~~ 152 (485)
++.++++++|+|||+|+.. ....+...+...|+..++++++++++.+ .+ ++|++|.+.-.-. .-.....+.
T Consensus 76 ~~~~al~~aD~Vi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~p~a~ii~~SNPv~~~t--~~~~~~~~~---- 149 (329)
T 1b8p_A 76 DPMTAFKDADVALLVGARPRGPGMERKDLLEANAQIFTVQGKAIDAVASRNIKVLVVGNPANTNA--YIAMKSAPS---- 149 (329)
T ss_dssp SHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHH--HHHHHTCTT----
T ss_pred CcHHHhCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEccCchHHHH--HHHHHHcCC----
Confidence 5778899999999999943 3344566788999999999999999984 65 8999987431100 000000001
Q ss_pred CCCCchHHHHHHHHHHHHHHHhCCCCceEEEEecCCcccCCC
Q 047227 153 PKHNDFYSATKAEGEALVIKANGTNGLLTCCIRPSSIFGPGD 194 (485)
Q Consensus 153 ~~~~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~ 194 (485)
..+...|+.++....++...+++..|++...++..+|+|.+.
T Consensus 150 ~p~~~v~g~t~Ld~~r~~~~la~~lgv~~~~v~~~~v~G~Hg 191 (329)
T 1b8p_A 150 LPAKNFTAMLRLDHNRALSQIAAKTGKPVSSIEKLFVWGNHS 191 (329)
T ss_dssp SCGGGEEECCHHHHHHHHHHHHHHHTCCGGGEESCEEEBCSS
T ss_pred CCHHHEEEeecHHHHHHHHHHHHHhCcCHHHceEEEEEeccC
Confidence 112234666666666666666666677666777777888643
|
| >1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A | Back alignment and structure |
|---|
Probab=98.98 E-value=3.4e-09 Score=103.44 Aligned_cols=117 Identities=13% Similarity=0.089 Sum_probs=82.7
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCC-ceEEEeecCCccccCCccchhhhhhhhcC-CCeEEEEecCCCHHHHHHHhc
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDM-FSVRIADLSDSIALEPHEEQGILGEALRS-GRAHYVSFDLRHKAQVLQALQ 82 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~Dl~d~~~l~~~~~ 82 (485)
.++|||+||||+||+|+.++..|+.+|. .+|+++|+... .. ...+.... .... +.+ +.+..++.++++
T Consensus 6 ~~~mKI~ViGAaG~VG~~la~~L~~~g~~~ev~l~Di~~~------~~--~~~dL~~~~~~~~-v~~-~~~t~d~~~al~ 75 (326)
T 1smk_A 6 APGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNA------PG--VTADISHMDTGAV-VRG-FLGQQQLEAALT 75 (326)
T ss_dssp --CEEEEEETTTSTTHHHHHHHHHHCTTEEEEEEEESSSH------HH--HHHHHHTSCSSCE-EEE-EESHHHHHHHHT
T ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCCCEEEEEeCCCc------Hh--HHHHhhcccccce-EEE-EeCCCCHHHHcC
Confidence 3568999999999999999999998872 27888887543 00 01111110 1111 122 234556888999
Q ss_pred CCCEEEEcCCCCC-CCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecC
Q 047227 83 GAEVVFHMAAPNS-SINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSS 131 (485)
Q Consensus 83 ~~d~Vih~aa~~~-~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS 131 (485)
++|+|||+++... .......+...|+.+++++++++++.+++.+|+++|
T Consensus 76 gaDvVi~~ag~~~~~g~~r~dl~~~N~~~~~~i~~~i~~~~p~~~viv~S 125 (326)
T 1smk_A 76 GMDLIIVPAGVPRKPGMTRDDLFKINAGIVKTLCEGIAKCCPRAIVNLIS 125 (326)
T ss_dssp TCSEEEECCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHCTTSEEEECC
T ss_pred CCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEEC
Confidence 9999999999433 333456778999999999999999999888888877
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=1e-08 Score=123.91 Aligned_cols=166 Identities=15% Similarity=0.049 Sum_probs=116.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhh-cCCCeEEEEecCCCHHHHHHHhc--
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEAL-RSGRAHYVSFDLRHKAQVLQALQ-- 82 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~-- 82 (485)
.++++|||||+|-||.+++++|.++|...|.+.+|+.... ........... ...++..+.+|++|.+++.++++
T Consensus 1883 ~~k~~lITGgs~GIG~aia~~la~~Ga~~vvl~~R~~~~~---~~~~~~~~~l~~~g~~v~~~~~Dvsd~~~v~~~~~~~ 1959 (2512)
T 2vz8_A 1883 PHKSYVITGGLGGFGLQLAQWLRLRGAQKLVLTSRSGIRT---GYQARQVREWRRQGVQVLVSTSNASSLDGARSLITEA 1959 (2512)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTCCEEEEECSSCCCS---HHHHHHHHHHHHTTCEEEEECCCSSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEEeCCCcch---HHHHHHHHHHHhCCCEEEEEecCCCCHHHHHHHHHHH
Confidence 4678999999999999999999999953477777764311 00001111111 13467888999999998877764
Q ss_pred ----CCCEEEEcCCCC-------CCCCchhhhHHHHHHHHHHHHHHHHhc--CCCEEEEecCccccccCCCCcCCCCCCC
Q 047227 83 ----GAEVVFHMAAPN-------SSINNHKLHHSVNVEGTKNVIDACAEL--KVKRLIYTSSPSVVFDGVHGIINGNEAL 149 (485)
Q Consensus 83 ----~~d~Vih~aa~~-------~~~~~~~~~~~~nv~~t~~ll~a~~~~--~v~r~V~~SS~~vy~~~~~~~~~~~e~~ 149 (485)
..|.|||+|+.. .+.+++...+++|+.|+.++.+++... ...+||++||.+...
T Consensus 1960 ~~~g~id~lVnnAgv~~~~~~~~~t~e~~~~~~~~nv~g~~~l~~~~~~~~~~~g~iV~iSS~ag~~------------- 2026 (2512)
T 2vz8_A 1960 TQLGPVGGVFNLAMVLRDAVLENQTPEFFQDVSKPKYSGTANLDRVTREACPELDYFVIFSSVSCGR------------- 2026 (2512)
T ss_dssp HHHSCEEEEEECCCC----------------CTTTTHHHHHHHHHHHHHHCTTCCEEEEECCHHHHT-------------
T ss_pred HhcCCCcEEEECCCcCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCEEEEecchhhcC-------------
Confidence 489999999932 234567788999999999998887654 246999999976542
Q ss_pred CCCCCCCchHHHHHHHHHHHHHHHhCCCCceEEEEecCCcc
Q 047227 150 PYPPKHNDFYSATKAEGEALVIKANGTNGLLTCCIRPSSIF 190 (485)
Q Consensus 150 ~~~~~~~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~ 190 (485)
+......|+.+|...+.+.+.... .|++...+-.+.+-
T Consensus 2027 --g~~g~~~Y~aaKaal~~l~~~rr~-~Gl~~~a~~~g~~~ 2064 (2512)
T 2vz8_A 2027 --GNAGQANYGFANSAMERICEKRRH-DGLPGLAVQWGAIG 2064 (2512)
T ss_dssp --TCTTCHHHHHHHHHHHHHHHHHHH-TTSCCCEEEECCBC
T ss_pred --CCCCcHHHHHHHHHHHHHHHHHHH-CCCcEEEEEccCcC
Confidence 123456899999999999986553 48888888777653
|
| >1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=8.1e-09 Score=100.25 Aligned_cols=117 Identities=11% Similarity=0.037 Sum_probs=79.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCc-eEEEeec--CCccccCCccchhhhhhh--hcCCCeEEEEecCCCHHHHHHHhc
Q 047227 8 RLCVVTGGRGFAARHLVEMLIRYDMF-SVRIADL--SDSIALEPHEEQGILGEA--LRSGRAHYVSFDLRHKAQVLQALQ 82 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~~G~~-~V~~~~r--~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~Dl~d~~~l~~~~~ 82 (485)
|||+||||+||+|++++..|+.+|.. ++.++|+ ...... ..... +.+. .....+++...| +++.++++
T Consensus 1 mKI~V~GaaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~--~~~~d-l~~~~~~~~~~~~i~~~~----d~l~~al~ 73 (313)
T 1hye_A 1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLE--GLRED-IYDALAGTRSDANIYVES----DENLRIID 73 (313)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHH--HHHHH-HHHHHTTSCCCCEEEEEE----TTCGGGGT
T ss_pred CEEEEECCCChhHHHHHHHHHhCCCCCEEEEEcCCCchhhhH--HHHHH-HHHhHHhcCCCeEEEeCC----cchHHHhC
Confidence 58999999999999999999988753 5888887 321000 00000 1111 111233333322 12566789
Q ss_pred CCCEEEEcCCCC-CCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCc
Q 047227 83 GAEVVFHMAAPN-SSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSP 132 (485)
Q Consensus 83 ~~d~Vih~aa~~-~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~ 132 (485)
++|+|||+|+.. ........++..|+.+++++++++++.+ +++|+++|-
T Consensus 74 gaD~Vi~~Ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~-~~~vlv~SN 123 (313)
T 1hye_A 74 ESDVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEIC-DTKIFVITN 123 (313)
T ss_dssp TCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-CCEEEECSS
T ss_pred CCCEEEECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CeEEEEecC
Confidence 999999999943 3334556789999999999999999999 888888873
|
| >1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A | Back alignment and structure |
|---|
Probab=98.77 E-value=2.7e-09 Score=103.11 Aligned_cols=114 Identities=12% Similarity=0.071 Sum_probs=78.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCc-eEEEeec--CCccccCCccchhhhhhhh-cCCCeEEEEecCCCHHHHHHHhcC
Q 047227 8 RLCVVTGGRGFAARHLVEMLIRYDMF-SVRIADL--SDSIALEPHEEQGILGEAL-RSGRAHYVSFDLRHKAQVLQALQG 83 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~~G~~-~V~~~~r--~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~~ 83 (485)
|||+||||+|++|++++..|+.+|+. ++.++|+ ...... ..... +.+.. ...+++... | + .+++++
T Consensus 1 mKI~IiGAaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~--~~~~d-l~~~~~~~~~~~v~~-~--~----~~a~~~ 70 (303)
T 1o6z_A 1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTV--GQAAD-TNHGIAYDSNTRVRQ-G--G----YEDTAG 70 (303)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHH--HHHHH-HHHHHTTTCCCEEEE-C--C----GGGGTT
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEcCCCChhhHH--HHHHH-HHHHHhhCCCcEEEe-C--C----HHHhCC
Confidence 68999999999999999999988753 5888887 322100 00000 11111 112334333 2 2 456889
Q ss_pred CCEEEEcCCCCC-CCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecC
Q 047227 84 AEVVFHMAAPNS-SINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSS 131 (485)
Q Consensus 84 ~d~Vih~aa~~~-~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS 131 (485)
+|+|||+|+... .......+...|+.+++++++++++.+++.+|+++|
T Consensus 71 aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~~~viv~S 119 (303)
T 1o6z_A 71 SDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTS 119 (303)
T ss_dssp CSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHTTCSCCEEEECC
T ss_pred CCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEeC
Confidence 999999999433 333455778999999999999999999888888877
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
|---|
Probab=98.62 E-value=2.4e-07 Score=78.53 Aligned_cols=104 Identities=17% Similarity=0.152 Sum_probs=75.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHH-hcCC
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQA-LQGA 84 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~-~~~~ 84 (485)
++++|+|+|+ |.+|+.+++.|.+.| ++|+++++..... ..+...+...+.+|..|.+.+.++ ++++
T Consensus 5 ~~~~v~I~G~-G~iG~~~a~~l~~~g-~~v~~~d~~~~~~-----------~~~~~~~~~~~~~d~~~~~~l~~~~~~~~ 71 (144)
T 2hmt_A 5 KNKQFAVIGL-GRFGGSIVKELHRMG-HEVLAVDINEEKV-----------NAYASYATHAVIANATEENELLSLGIRNF 71 (144)
T ss_dssp -CCSEEEECC-SHHHHHHHHHHHHTT-CCCEEEESCHHHH-----------HTTTTTCSEEEECCTTCHHHHHTTTGGGC
T ss_pred cCCcEEEECC-CHHHHHHHHHHHHCC-CEEEEEeCCHHHH-----------HHHHHhCCEEEEeCCCCHHHHHhcCCCCC
Confidence 4568999997 999999999999999 5888988864321 111223456788999998888776 6789
Q ss_pred CEEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCcccc
Q 047227 85 EVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVV 135 (485)
Q Consensus 85 d~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy 135 (485)
|+||++++.. .+.|. .+.+.+++.+++++|..++...+
T Consensus 72 d~vi~~~~~~---------~~~~~----~~~~~~~~~~~~~ii~~~~~~~~ 109 (144)
T 2hmt_A 72 EYVIVAIGAN---------IQAST----LTTLLLKELDIPNIWVKAQNYYH 109 (144)
T ss_dssp SEEEECCCSC---------HHHHH----HHHHHHHHTTCSEEEEECCSHHH
T ss_pred CEEEECCCCc---------hHHHH----HHHHHHHHcCCCeEEEEeCCHHH
Confidence 9999988621 12222 46777888888787776664443
|
| >3zen_D Fatty acid synthase; transferase, mycolic acid biosynthesis, multifunctional ENZY substrate channeling; HET: FMN; 7.50A {Mycobacterium smegmatis} PDB: 4b3y_A* | Back alignment and structure |
|---|
Probab=98.54 E-value=1.3e-06 Score=105.77 Aligned_cols=230 Identities=13% Similarity=0.025 Sum_probs=137.4
Q ss_pred CCCCEEEEEcCCCc-hHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhc--CCCeEEEEecCCCHHHHHHHh
Q 047227 5 ENERLCVVTGGRGF-AARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALR--SGRAHYVSFDLRHKAQVLQAL 81 (485)
Q Consensus 5 ~~~~~iLVtGgtG~-iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~Dl~d~~~l~~~~ 81 (485)
.++|++|||||++- ||.++++.|.+.| .+|.+.+|+...... ....-+...+. ..++..+.+|++|++++.+++
T Consensus 2134 l~gKvaLVTGAs~GsIG~AiA~~La~~G-A~Vvi~~r~~~~~~~--~~~~~l~~~l~~~G~~~~~v~~Dvtd~~~v~~lv 2210 (3089)
T 3zen_D 2134 XXDEVAVVTGASKGSIAASVVGQLLDGG-ATVIATTSRLDDDRL--AFYKQLYRDHARFDATLWVVPANMASYSDIDKLV 2210 (3089)
T ss_dssp CCCCEEEEESCCTTSHHHHHHHHHHHTT-CEEEEEESCCSHHHH--HHHHHHHHHHCCTTCEEEEEECCTTCHHHHHHHH
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHHCC-CEEEEEeCChhhhhh--HHHHHHHHHHhhcCCeEEEEEecCCCHHHHHHHH
Confidence 56789999999988 9999999999999 699998886442000 00000111121 235778899999999887764
Q ss_pred ----c-------CCCEEEEcCCCC------------CCCCchhhh----HHHHHHHHHHHHHHHHh----cCCC---EEE
Q 047227 82 ----Q-------GAEVVFHMAAPN------------SSINNHKLH----HSVNVEGTKNVIDACAE----LKVK---RLI 127 (485)
Q Consensus 82 ----~-------~~d~Vih~aa~~------------~~~~~~~~~----~~~nv~~t~~ll~a~~~----~~v~---r~V 127 (485)
+ +.|++||+||.. ....++... +++|..++..++.++.. .+.. .++
T Consensus 2211 ~~i~~~~~~~fG~IDILVNNAGi~d~~~~~a~~~~~~~~e~~~~~~e~~~~vnl~~~~~l~~~~~~~m~~~~~g~~~~ii 2290 (3089)
T 3zen_D 2211 EWVGTEQTESLGPQSIHLKDAQTPTLLFPFAAPRVAGDMSEVGSRAEMEMKVLLWAVQRLISGLSKIGAERDIASRLHVV 2290 (3089)
T ss_dssp HHHTSCCEEEESSSEEEECCCCCCSEEEECCCCCCCCTTSCTTSHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCCEEEE
T ss_pred HHHHhhhhhhcCCCCEEEECCCcccccCcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCceeEEE
Confidence 2 379999999850 012233333 78899888887776654 2221 222
Q ss_pred EecCccccccCCCCcCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhCC----CCceEEEEecCCcccCCC---CCChHH
Q 047227 128 YTSSPSVVFDGVHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANGT----NGLLTCCIRPSSIFGPGD---RLLVPS 200 (485)
Q Consensus 128 ~~SS~~vy~~~~~~~~~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~----~g~~~~ilRp~~v~Gp~~---~~~~~~ 200 (485)
..+|. ..+ . ......|+.||+..+.+.+.++.+ .+++++.+.||.+-+... ......
T Consensus 2291 ~~~ss-~~g-----~----------~g~~~aYsASKaAl~~LtrslA~E~~~a~~IrVn~v~PG~v~tT~l~~~~~~~~~ 2354 (3089)
T 3zen_D 2291 LPGSP-NRG-----M----------FGGDGAYGEAKSALDALENRWSAEKSWAERVSLAHALIGWTKGTGLMGQNDAIVS 2354 (3089)
T ss_dssp EEECS-STT-----S----------CSSCSSHHHHGGGHHHHHHHHHHCSTTTTTEEEEEEECCCEECSTTTTTTTTTHH
T ss_pred EECCc-ccc-----c----------CCCchHHHHHHHHHHHHHHHHHhccccCCCeEEEEEeecccCCCcccccchhHHH
Confidence 22221 110 0 112347999999999999888766 258899999998874321 111111
Q ss_pred HHHHHHcCCCeEEecCCCceeecccHHHHHHHHHHHHHHhccccchhhccCCcE--EEeeCCC---CccHHHHHHHH
Q 047227 201 LVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQA--YFVTNME---SIKFWEFVSLI 272 (485)
Q Consensus 201 ~~~~~~~g~~~~~~g~g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~--ynv~~~~---~~t~~el~~~i 272 (485)
. .. ... .+ ....+|+|.+++.++..... ....++. ..++++- ...+.|+...+
T Consensus 2355 ~---~~-~~~---------~r-~~~PeEIA~avlfLaS~~a~-----~~~~~~p~~vdl~GG~~~~~~~~~~~~~~~ 2412 (3089)
T 3zen_D 2355 A---VE-EAG---------VT-TYTTDEMAAMLLDLCTVETK-----VAAAGAPVKVDLTGGLGDIKIDMAELAAKA 2412 (3089)
T ss_dssp H---HG-GGS---------CB-CEEHHHHHHHHHHTTSHHHH-----HHHHHSCEEEECSBSCSSCCCCHHHHTHHH
T ss_pred H---HH-hcC---------CC-CCCHHHHHHHHHHHhChhhh-----hHhcCCeEEEEcCCCcCcCCCCHHHHHHHH
Confidence 1 11 110 01 12689999999876431111 1112222 3333542 35778777754
|
| >1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A | Back alignment and structure |
|---|
Probab=98.50 E-value=1.8e-07 Score=95.33 Aligned_cols=107 Identities=14% Similarity=0.158 Sum_probs=75.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCCCE
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGAEV 86 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~d~ 86 (485)
+++|+|+| +|++|+++++.|.+.| ++|++.+|....... +.. ..+++..+.+|+.|.+++.++++++|+
T Consensus 3 ~k~VlViG-aG~iG~~ia~~L~~~G-~~V~v~~R~~~~a~~-------la~--~~~~~~~~~~Dv~d~~~l~~~l~~~Dv 71 (450)
T 1ff9_A 3 TKSVLMLG-SGFVTRPTLDVLTDSG-IKVTVACRTLESAKK-------LSA--GVQHSTPISLDVNDDAALDAEVAKHDL 71 (450)
T ss_dssp CCEEEEEC-CSTTHHHHHHHHHTTT-CEEEEEESSHHHHHH-------TTT--TCTTEEEEECCTTCHHHHHHHHTTSSE
T ss_pred CCEEEEEC-CCHHHHHHHHHHHhCc-CEEEEEECCHHHHHH-------HHH--hcCCceEEEeecCCHHHHHHHHcCCcE
Confidence 57999997 8999999999999999 589999887532110 000 012477889999999999999999999
Q ss_pred EEEcCCCCCCCCchhhhHH--HH-------HHHHHHHHHHHHhcCCC
Q 047227 87 VFHMAAPNSSINNHKLHHS--VN-------VEGTKNVIDACAELKVK 124 (485)
Q Consensus 87 Vih~aa~~~~~~~~~~~~~--~n-------v~~t~~ll~a~~~~~v~ 124 (485)
|||+++......-....++ .| ...+.+++++|++.|++
T Consensus 72 VIn~a~~~~~~~i~~a~l~~g~~vvd~~~~~~~~~~l~~aA~~aGv~ 118 (450)
T 1ff9_A 72 VISLIPYTFHATVIKSAIRQKKHVVTTSYVSPAMMELDQAAKDAGIT 118 (450)
T ss_dssp EEECCC--CHHHHHHHHHHHTCEEEESSCCCHHHHHTHHHHHHTTCE
T ss_pred EEECCccccchHHHHHHHhCCCeEEEeecccHHHHHHHHHHHHCCCe
Confidence 9999984322111111111 11 24678899999999973
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.48 E-value=9.3e-07 Score=74.93 Aligned_cols=96 Identities=20% Similarity=0.130 Sum_probs=69.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHH-hcCC
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQA-LQGA 84 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~-~~~~ 84 (485)
++++|+|+|+ |++|+++++.|.++| ++|+++++.+.. ...+...++.++.+|.+|++.+.++ ++++
T Consensus 5 ~~~~v~I~G~-G~iG~~la~~L~~~g-~~V~~id~~~~~-----------~~~~~~~~~~~~~gd~~~~~~l~~~~~~~~ 71 (141)
T 3llv_A 5 GRYEYIVIGS-EAAGVGLVRELTAAG-KKVLAVDKSKEK-----------IELLEDEGFDAVIADPTDESFYRSLDLEGV 71 (141)
T ss_dssp -CCSEEEECC-SHHHHHHHHHHHHTT-CCEEEEESCHHH-----------HHHHHHTTCEEEECCTTCHHHHHHSCCTTC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCC-CeEEEEECCHHH-----------HHHHHHCCCcEEECCCCCHHHHHhCCcccC
Confidence 4578999996 999999999999999 589999986541 1112234688999999999988876 4679
Q ss_pred CEEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEE
Q 047227 85 EVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIY 128 (485)
Q Consensus 85 d~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~ 128 (485)
|+||.+.+ + .+.|. .+...+++.+..+++-
T Consensus 72 d~vi~~~~------~----~~~n~----~~~~~a~~~~~~~iia 101 (141)
T 3llv_A 72 SAVLITGS------D----DEFNL----KILKALRSVSDVYAIV 101 (141)
T ss_dssp SEEEECCS------C----HHHHH----HHHHHHHHHCCCCEEE
T ss_pred CEEEEecC------C----HHHHH----HHHHHHHHhCCceEEE
Confidence 99997765 1 12333 4556667766445443
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=98.46 E-value=2.9e-06 Score=73.16 Aligned_cols=104 Identities=17% Similarity=0.164 Sum_probs=72.1
Q ss_pred CCCCCCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhc-CCCeEEEEecCCCHHHHHH
Q 047227 1 MSGEENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALR-SGRAHYVSFDLRHKAQVLQ 79 (485)
Q Consensus 1 M~~~~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~Dl~d~~~l~~ 79 (485)
|+....+++|+|+|+ |.+|..+++.|.+.| +.|+++++.+... ..+. ..+...+.+|..+.+.+.+
T Consensus 13 ~~~~~~~~~v~IiG~-G~iG~~la~~L~~~g-~~V~vid~~~~~~-----------~~~~~~~g~~~~~~d~~~~~~l~~ 79 (155)
T 2g1u_A 13 MSKKQKSKYIVIFGC-GRLGSLIANLASSSG-HSVVVVDKNEYAF-----------HRLNSEFSGFTVVGDAAEFETLKE 79 (155)
T ss_dssp ----CCCCEEEEECC-SHHHHHHHHHHHHTT-CEEEEEESCGGGG-----------GGSCTTCCSEEEESCTTSHHHHHT
T ss_pred hhcccCCCcEEEECC-CHHHHHHHHHHHhCC-CeEEEEECCHHHH-----------HHHHhcCCCcEEEecCCCHHHHHH
Confidence 566667899999985 999999999999999 5999999875421 1122 3456778899999887776
Q ss_pred H-hcCCCEEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHh-cCCCEEEEecC
Q 047227 80 A-LQGAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAE-LKVKRLIYTSS 131 (485)
Q Consensus 80 ~-~~~~d~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~-~~v~r~V~~SS 131 (485)
+ ++++|+||.+.+. . ..| ..+.+.++. .+..+++...+
T Consensus 80 ~~~~~ad~Vi~~~~~------~----~~~----~~~~~~~~~~~~~~~iv~~~~ 119 (155)
T 2g1u_A 80 CGMEKADMVFAFTND------D----STN----FFISMNARYMFNVENVIARVY 119 (155)
T ss_dssp TTGGGCSEEEECSSC------H----HHH----HHHHHHHHHTSCCSEEEEECS
T ss_pred cCcccCCEEEEEeCC------c----HHH----HHHHHHHHHHCCCCeEEEEEC
Confidence 5 6789999988752 1 112 345666776 56666665554
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=98.43 E-value=1.6e-06 Score=73.07 Aligned_cols=98 Identities=14% Similarity=0.124 Sum_probs=70.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHH-hcCCC
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQA-LQGAE 85 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~-~~~~d 85 (485)
+|+|+|+|+ |++|+.+++.|.+.| ++|+++++.+.. ........++..+.+|..+.+.+.+. ++++|
T Consensus 4 ~m~i~IiG~-G~iG~~~a~~L~~~g-~~v~~~d~~~~~----------~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d 71 (140)
T 1lss_A 4 GMYIIIAGI-GRVGYTLAKSLSEKG-HDIVLIDIDKDI----------CKKASAEIDALVINGDCTKIKTLEDAGIEDAD 71 (140)
T ss_dssp -CEEEEECC-SHHHHHHHHHHHHTT-CEEEEEESCHHH----------HHHHHHHCSSEEEESCTTSHHHHHHTTTTTCS
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCC-CeEEEEECCHHH----------HHHHHHhcCcEEEEcCCCCHHHHHHcCcccCC
Confidence 589999985 999999999999999 589999886431 11111122567888999998877765 67899
Q ss_pred EEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEec
Q 047227 86 VVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTS 130 (485)
Q Consensus 86 ~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~S 130 (485)
+||++.+. . ..| ..+.+.+++.+++++|..+
T Consensus 72 ~vi~~~~~------~----~~~----~~~~~~~~~~~~~~ii~~~ 102 (140)
T 1lss_A 72 MYIAVTGK------E----EVN----LMSSLLAKSYGINKTIARI 102 (140)
T ss_dssp EEEECCSC------H----HHH----HHHHHHHHHTTCCCEEEEC
T ss_pred EEEEeeCC------c----hHH----HHHHHHHHHcCCCEEEEEe
Confidence 99998752 1 222 2566778888877777544
|
| >1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A* | Back alignment and structure |
|---|
Probab=98.38 E-value=5e-07 Score=86.58 Aligned_cols=82 Identities=17% Similarity=0.133 Sum_probs=63.3
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCC
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGA 84 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 84 (485)
.+++++|||||+|.+|++++..|.++| ..|++++|....... .........++.++.+|++|.+++.++++++
T Consensus 117 l~gk~vlVtGaaGGiG~aia~~L~~~G-~~V~i~~R~~~~~~~------l~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 189 (287)
T 1lu9_A 117 VKGKKAVVLAGTGPVGMRSAALLAGEG-AEVVLCGRKLDKAQA------AADSVNKRFKVNVTAAETADDASRAEAVKGA 189 (287)
T ss_dssp CTTCEEEEETCSSHHHHHHHHHHHHTT-CEEEEEESSHHHHHH------HHHHHHHHHTCCCEEEECCSHHHHHHHTTTC
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCc-CEEEEEECCHHHHHH------HHHHHHhcCCcEEEEecCCCHHHHHHHHHhC
Confidence 356899999999999999999999999 579999886432111 0111111125677889999999999999999
Q ss_pred CEEEEcCCC
Q 047227 85 EVVFHMAAP 93 (485)
Q Consensus 85 d~Vih~aa~ 93 (485)
|+|||+++.
T Consensus 190 DvlVn~ag~ 198 (287)
T 1lu9_A 190 HFVFTAGAI 198 (287)
T ss_dssp SEEEECCCT
T ss_pred CEEEECCCc
Confidence 999999984
|
| >5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A* | Back alignment and structure |
|---|
Probab=98.33 E-value=4.8e-07 Score=88.11 Aligned_cols=118 Identities=19% Similarity=0.123 Sum_probs=78.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCc-e-----EEEeecCCccccCCccchhhhhhhhc--CCCeEEEEecCCCHHHHH
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMF-S-----VRIADLSDSIALEPHEEQGILGEALR--SGRAHYVSFDLRHKAQVL 78 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~-~-----V~~~~r~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~Dl~d~~~l~ 78 (485)
.+||+||||+|+||++++..|...|.. + +.++|....... ..+...+... .+-..-+.. .+...
T Consensus 3 ~~kV~V~GaaG~VG~~la~~L~~~~~~~e~~~~~l~L~Di~~~~~~----~~g~a~DL~~~~~~~~~~~~~----~~~~~ 74 (333)
T 5mdh_A 3 PIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGV----LDGVLMELQDCALPLLKDVIA----TDKEE 74 (333)
T ss_dssp CEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHH----HHHHHHHHHHTCCTTEEEEEE----ESCHH
T ss_pred CeEEEEECCCCHHHHHHHHHHHhCCCccccCCCEEEEEeCCCcccc----chhhHhhhHhhhhcccCCEEE----cCCcH
Confidence 479999999999999999999987743 3 888887531000 0000111111 111211211 12356
Q ss_pred HHhcCCCEEEEcCCC-CCCCCchhhhHHHHHHHHHHHHHHHHhcCCC--EEEEecCc
Q 047227 79 QALQGAEVVFHMAAP-NSSINNHKLHHSVNVEGTKNVIDACAELKVK--RLIYTSSP 132 (485)
Q Consensus 79 ~~~~~~d~Vih~aa~-~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~--r~V~~SS~ 132 (485)
+.++++|+|||+||. .....+....++.|+..++++++++++.+.+ +++.+|-+
T Consensus 75 ~~~~daDvVvitAg~prkpG~tR~dll~~N~~i~~~i~~~i~~~~~~~~~vivvsNP 131 (333)
T 5mdh_A 75 IAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVGNP 131 (333)
T ss_dssp HHTTTCSEEEECCSCCCCTTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEEECSSS
T ss_pred HHhCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCc
Confidence 678999999999993 3334456678899999999999999999865 57766653
|
| >3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.31 E-value=1.6e-06 Score=85.98 Aligned_cols=94 Identities=19% Similarity=0.186 Sum_probs=72.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCCC
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGAE 85 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~d 85 (485)
..|||+|.|+ |++|+.+++.|.+. ++|.+.++..... .. ..+.+..+..|+.|.+++.++++++|
T Consensus 15 ~~mkilvlGa-G~vG~~~~~~L~~~--~~v~~~~~~~~~~----------~~--~~~~~~~~~~d~~d~~~l~~~~~~~D 79 (365)
T 3abi_A 15 RHMKVLILGA-GNIGRAIAWDLKDE--FDVYIGDVNNENL----------EK--VKEFATPLKVDASNFDKLVEVMKEFE 79 (365)
T ss_dssp -CCEEEEECC-SHHHHHHHHHHTTT--SEEEEEESCHHHH----------HH--HTTTSEEEECCTTCHHHHHHHHTTCS
T ss_pred CccEEEEECC-CHHHHHHHHHHhcC--CCeEEEEcCHHHH----------HH--HhccCCcEEEecCCHHHHHHHHhCCC
Confidence 3579999997 99999999988654 5899988865411 11 13456788999999999999999999
Q ss_pred EEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEec
Q 047227 86 VVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTS 130 (485)
Q Consensus 86 ~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~S 130 (485)
+||+++++. . ...++++|.+.|+ ++|=+|
T Consensus 80 vVi~~~p~~-------~--------~~~v~~~~~~~g~-~yvD~s 108 (365)
T 3abi_A 80 LVIGALPGF-------L--------GFKSIKAAIKSKV-DMVDVS 108 (365)
T ss_dssp EEEECCCGG-------G--------HHHHHHHHHHHTC-EEEECC
T ss_pred EEEEecCCc-------c--------cchHHHHHHhcCc-ceEeee
Confidence 999998632 1 1368999999996 766544
|
| >4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=98.29 E-value=1e-06 Score=88.52 Aligned_cols=97 Identities=13% Similarity=0.258 Sum_probs=72.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCc--eEEEeecCCccccCCccchhhhhhhhc---CCCeEEEEecCCCHHHHHHHh
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMF--SVRIADLSDSIALEPHEEQGILGEALR---SGRAHYVSFDLRHKAQVLQAL 81 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~--~V~~~~r~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~Dl~d~~~l~~~~ 81 (485)
||+|+|+|+ |++|+.+++.|.+.|.. .|.+.+|....... +...+. ..++..+.+|+.|.+++.+++
T Consensus 1 M~kVlIiGa-GgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~-------la~~l~~~~~~~~~~~~~D~~d~~~l~~~l 72 (405)
T 4ina_A 1 MAKVLQIGA-GGVGGVVAHKMAMNREVFSHITLASRTLSKCQE-------IAQSIKAKGYGEIDITTVDADSIEELVALI 72 (405)
T ss_dssp -CEEEEECC-SHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHH-------HHHHHHHTTCCCCEEEECCTTCHHHHHHHH
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEEECCHHHHHH-------HHHHhhhhcCCceEEEEecCCCHHHHHHHH
Confidence 369999998 99999999999999853 89999887542211 111111 136889999999999999999
Q ss_pred cC--CCEEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEE
Q 047227 82 QG--AEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLI 127 (485)
Q Consensus 82 ~~--~d~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V 127 (485)
++ +|+|||++++.. ...++++|.+.|+. ++
T Consensus 73 ~~~~~DvVin~ag~~~---------------~~~v~~a~l~~g~~-vv 104 (405)
T 4ina_A 73 NEVKPQIVLNIALPYQ---------------DLTIMEACLRTGVP-YL 104 (405)
T ss_dssp HHHCCSEEEECSCGGG---------------HHHHHHHHHHHTCC-EE
T ss_pred HhhCCCEEEECCCccc---------------ChHHHHHHHHhCCC-EE
Confidence 87 999999987311 14688999999874 44
|
| >1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A* | Back alignment and structure |
|---|
Probab=98.26 E-value=8.4e-06 Score=78.85 Aligned_cols=115 Identities=16% Similarity=0.098 Sum_probs=77.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCC-ceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCCCE
Q 047227 8 RLCVVTGGRGFAARHLVEMLIRYDM-FSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGAEV 86 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~~G~-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~d~ 86 (485)
|||.|+|++|++|..++..|+..|. .+|.++|+..... .... +.+.....+++.+.+ ..++.++++++|+
T Consensus 1 mKI~IiGa~G~VG~~la~~L~~~~~~~ev~L~Di~~~~~----~a~d-L~~~~~~~~l~~~~~----t~d~~~a~~~aDv 71 (314)
T 1mld_A 1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPG----VAAD-LSHIETRATVKGYLG----PEQLPDCLKGCDV 71 (314)
T ss_dssp CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHH----HHHH-HTTSSSSCEEEEEES----GGGHHHHHTTCSE
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCcEEEEEeCCccHH----HHHH-HhccCcCceEEEecC----CCCHHHHhCCCCE
Confidence 5899999999999999999998873 3799999865100 0000 111111112222211 1236778899999
Q ss_pred EEEcCCCCC-CCCchhhhHHHHHHHHHHHHHHHHhcCCC-EEEEecC
Q 047227 87 VFHMAAPNS-SINNHKLHHSVNVEGTKNVIDACAELKVK-RLIYTSS 131 (485)
Q Consensus 87 Vih~aa~~~-~~~~~~~~~~~nv~~t~~ll~a~~~~~v~-r~V~~SS 131 (485)
||++++... ...........|+..++.+++.+.+.+.. ++|++|-
T Consensus 72 Vvi~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~sN 118 (314)
T 1mld_A 72 VVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISN 118 (314)
T ss_dssp EEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSS
T ss_pred EEECCCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEECC
Confidence 999999433 33444567899999999999999998743 7777654
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=98.12 E-value=2.1e-05 Score=67.47 Aligned_cols=77 Identities=12% Similarity=0.105 Sum_probs=58.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHH-hcCCC
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQA-LQGAE 85 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~-~~~~d 85 (485)
.++|+|+|+ |.+|+.+++.|.+.| +.|+++++.+.... ..+.. ....++.++.+|.+|++.+.++ ++++|
T Consensus 3 ~~~vlI~G~-G~vG~~la~~L~~~g-~~V~vid~~~~~~~------~~~~~-~~~~~~~~i~gd~~~~~~l~~a~i~~ad 73 (153)
T 1id1_A 3 KDHFIVCGH-SILAINTILQLNQRG-QNVTVISNLPEDDI------KQLEQ-RLGDNADVIPGDSNDSSVLKKAGIDRCR 73 (153)
T ss_dssp CSCEEEECC-SHHHHHHHHHHHHTT-CCEEEEECCCHHHH------HHHHH-HHCTTCEEEESCTTSHHHHHHHTTTTCS
T ss_pred CCcEEEECC-CHHHHHHHHHHHHCC-CCEEEEECCChHHH------HHHHH-hhcCCCeEEEcCCCCHHHHHHcChhhCC
Confidence 468999985 999999999999999 58999988631000 00111 1134689999999999999887 88999
Q ss_pred EEEEcCC
Q 047227 86 VVFHMAA 92 (485)
Q Consensus 86 ~Vih~aa 92 (485)
+||-+.+
T Consensus 74 ~vi~~~~ 80 (153)
T 1id1_A 74 AILALSD 80 (153)
T ss_dssp EEEECSS
T ss_pred EEEEecC
Confidence 9997764
|
| >2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.06 E-value=7.8e-06 Score=83.38 Aligned_cols=78 Identities=18% Similarity=0.270 Sum_probs=60.0
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCC
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGA 84 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 84 (485)
.++++|+|+|+ |++|+.+++.|.+.+..+|++++|..... .......++..+.+|+.|.+++.++++++
T Consensus 21 l~~k~VlIiGA-GgiG~aia~~L~~~~g~~V~v~~R~~~ka----------~~la~~~~~~~~~~D~~d~~~l~~~l~~~ 89 (467)
T 2axq_A 21 HMGKNVLLLGS-GFVAQPVIDTLAANDDINVTVACRTLANA----------QALAKPSGSKAISLDVTDDSALDKVLADN 89 (467)
T ss_dssp --CEEEEEECC-STTHHHHHHHHHTSTTEEEEEEESSHHHH----------HHHHGGGTCEEEECCTTCHHHHHHHHHTS
T ss_pred CCCCEEEEECC-hHHHHHHHHHHHhCCCCeEEEEECCHHHH----------HHHHHhcCCcEEEEecCCHHHHHHHHcCC
Confidence 35679999996 99999999999998326899999875421 11111135677889999999999999999
Q ss_pred CEEEEcCCC
Q 047227 85 EVVFHMAAP 93 (485)
Q Consensus 85 d~Vih~aa~ 93 (485)
|+|||+++.
T Consensus 90 DvVIn~tp~ 98 (467)
T 2axq_A 90 DVVISLIPY 98 (467)
T ss_dssp SEEEECSCG
T ss_pred CEEEECCch
Confidence 999999883
|
| >2gk4_A Conserved hypothetical protein; alpha-beta-alpha sandwich, flavoprotein, structural genomics protein structure initiative; 1.83A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=97.97 E-value=2.2e-05 Score=71.64 Aligned_cols=74 Identities=19% Similarity=0.308 Sum_probs=53.2
Q ss_pred CCCEEEEEcC----------------CCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEe
Q 047227 6 NERLCVVTGG----------------RGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSF 69 (485)
Q Consensus 6 ~~~~iLVtGg----------------tG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 69 (485)
.+|+|||||| +|.+|.++++.|.++| +.|+++.+..... +. ...++..+
T Consensus 2 ~gk~vlVTgG~T~E~IDpVR~ItN~SSG~mG~aiA~~~~~~G-a~V~lv~~~~~~~--~~----------~~~~~~~~-- 66 (232)
T 2gk4_A 2 NAMKILVTSGGTSEAIDSVRSITNHSTGHLGKIITETLLSAG-YEVCLITTKRALK--PE----------PHPNLSIR-- 66 (232)
T ss_dssp -CCEEEEECSBCEEESSSSEEEEECCCCHHHHHHHHHHHHTT-CEEEEEECTTSCC--CC----------CCTTEEEE--
T ss_pred CCCEEEEeCCCcccccCceeeccCCCCCHHHHHHHHHHHHCC-CEEEEEeCCcccc--cc----------CCCCeEEE--
Confidence 4789999999 9999999999999999 6999998864311 10 01244444
Q ss_pred cCCCHHHHHH----HhcCCCEEEEcCCCC
Q 047227 70 DLRHKAQVLQ----ALQGAEVVFHMAAPN 94 (485)
Q Consensus 70 Dl~d~~~l~~----~~~~~d~Vih~aa~~ 94 (485)
|+...+++.+ .+.++|++||+||..
T Consensus 67 ~v~s~~em~~~v~~~~~~~Dili~aAAvs 95 (232)
T 2gk4_A 67 EITNTKDLLIEMQERVQDYQVLIHSMAVS 95 (232)
T ss_dssp ECCSHHHHHHHHHHHGGGCSEEEECSBCC
T ss_pred EHhHHHHHHHHHHHhcCCCCEEEEcCccc
Confidence 5556554443 445799999999953
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.97 E-value=3.1e-05 Score=68.53 Aligned_cols=96 Identities=10% Similarity=0.063 Sum_probs=69.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhc-CCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHH--hc
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRY-DMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQA--LQ 82 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~-G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~--~~ 82 (485)
.+++|+|+| .|.+|..+++.|.+. | +.|+++++.+.. ...+...++..+.+|..|.+.+.++ ++
T Consensus 38 ~~~~v~IiG-~G~~G~~~a~~L~~~~g-~~V~vid~~~~~-----------~~~~~~~g~~~~~gd~~~~~~l~~~~~~~ 104 (183)
T 3c85_A 38 GHAQVLILG-MGRIGTGAYDELRARYG-KISLGIEIREEA-----------AQQHRSEGRNVISGDATDPDFWERILDTG 104 (183)
T ss_dssp TTCSEEEEC-CSHHHHHHHHHHHHHHC-SCEEEEESCHHH-----------HHHHHHTTCCEEECCTTCHHHHHTBCSCC
T ss_pred CCCcEEEEC-CCHHHHHHHHHHHhccC-CeEEEEECCHHH-----------HHHHHHCCCCEEEcCCCCHHHHHhccCCC
Confidence 357899998 699999999999999 9 589999887541 1112234678889999999888877 78
Q ss_pred CCCEEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcC-CCEEEE
Q 047227 83 GAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELK-VKRLIY 128 (485)
Q Consensus 83 ~~d~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~-v~r~V~ 128 (485)
++|+||.+.+. . . ....++..+++.+ ..+++.
T Consensus 105 ~ad~vi~~~~~------~----~----~~~~~~~~~~~~~~~~~ii~ 137 (183)
T 3c85_A 105 HVKLVLLAMPH------H----Q----GNQTALEQLQRRNYKGQIAA 137 (183)
T ss_dssp CCCEEEECCSS------H----H----HHHHHHHHHHHTTCCSEEEE
T ss_pred CCCEEEEeCCC------h----H----HHHHHHHHHHHHCCCCEEEE
Confidence 89999987641 1 1 2234566777777 444443
|
| >1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A* | Back alignment and structure |
|---|
Probab=97.86 E-value=5e-06 Score=78.63 Aligned_cols=37 Identities=11% Similarity=0.211 Sum_probs=28.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEE-EeecCC
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVR-IADLSD 42 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~-~~~r~~ 42 (485)
++|||.|+|++|.+|+.+++.+.+....++. ++++..
T Consensus 4 ~~mkV~V~Ga~G~mG~~~~~~~~~~~~~elva~~d~~~ 41 (273)
T 1dih_A 4 ANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREG 41 (273)
T ss_dssp CBEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTT
T ss_pred CCcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCc
Confidence 3489999999999999999998865324555 555543
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.84 E-value=8e-05 Score=67.92 Aligned_cols=95 Identities=20% Similarity=0.251 Sum_probs=68.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHH-hcCCCE
Q 047227 8 RLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQA-LQGAEV 86 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~-~~~~d~ 86 (485)
|+|+|+|+ |.+|+++++.|.++| +.|+++++.+.. ........++..+.+|.+|++.+.++ ++++|+
T Consensus 1 M~iiIiG~-G~~G~~la~~L~~~g-~~v~vid~~~~~----------~~~l~~~~~~~~i~gd~~~~~~l~~a~i~~ad~ 68 (218)
T 3l4b_C 1 MKVIIIGG-ETTAYYLARSMLSRK-YGVVIINKDREL----------CEEFAKKLKATIIHGDGSHKEILRDAEVSKNDV 68 (218)
T ss_dssp CCEEEECC-HHHHHHHHHHHHHTT-CCEEEEESCHHH----------HHHHHHHSSSEEEESCTTSHHHHHHHTCCTTCE
T ss_pred CEEEEECC-CHHHHHHHHHHHhCC-CeEEEEECCHHH----------HHHHHHHcCCeEEEcCCCCHHHHHhcCcccCCE
Confidence 57999995 999999999999999 589999886541 11111224678999999999999887 688999
Q ss_pred EEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHh-cCCCEEEE
Q 047227 87 VFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAE-LKVKRLIY 128 (485)
Q Consensus 87 Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~-~~v~r~V~ 128 (485)
||-+.+. . ..| ..+...+++ .+..++|-
T Consensus 69 vi~~~~~------d----~~n----~~~~~~a~~~~~~~~iia 97 (218)
T 3l4b_C 69 VVILTPR------D----EVN----LFIAQLVMKDFGVKRVVS 97 (218)
T ss_dssp EEECCSC------H----HHH----HHHHHHHHHTSCCCEEEE
T ss_pred EEEecCC------c----HHH----HHHHHHHHHHcCCCeEEE
Confidence 9966541 1 122 235555665 56667664
|
| >2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A | Back alignment and structure |
|---|
Probab=97.80 E-value=7.3e-05 Score=68.98 Aligned_cols=93 Identities=19% Similarity=0.215 Sum_probs=67.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHH-hcCC
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQA-LQGA 84 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~-~~~~ 84 (485)
..++|+|+|+ |.+|+.+++.|.+.| + |+++++.+.. .. .+. .++.++.+|.+|++.+.++ ++++
T Consensus 8 ~~~~viI~G~-G~~G~~la~~L~~~g-~-v~vid~~~~~----------~~-~~~-~~~~~i~gd~~~~~~l~~a~i~~a 72 (234)
T 2aef_A 8 KSRHVVICGW-SESTLECLRELRGSE-V-FVLAEDENVR----------KK-VLR-SGANFVHGDPTRVSDLEKANVRGA 72 (234)
T ss_dssp --CEEEEESC-CHHHHHHHHHSTTSE-E-EEEESCGGGH----------HH-HHH-TTCEEEESCTTCHHHHHHTTCTTC
T ss_pred CCCEEEEECC-ChHHHHHHHHHHhCC-e-EEEEECCHHH----------HH-HHh-cCCeEEEcCCCCHHHHHhcCcchh
Confidence 3578999996 999999999999999 5 8888876431 11 122 5689999999999999887 7899
Q ss_pred CEEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCC-EEE
Q 047227 85 EVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVK-RLI 127 (485)
Q Consensus 85 d~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~-r~V 127 (485)
|.||-+.+. + ..|. .+...+++.+.+ ++|
T Consensus 73 d~vi~~~~~-----d-----~~n~----~~~~~a~~~~~~~~ii 102 (234)
T 2aef_A 73 RAVIVDLES-----D-----SETI----HCILGIRKIDESVRII 102 (234)
T ss_dssp SEEEECCSC-----H-----HHHH----HHHHHHHHHCSSSEEE
T ss_pred cEEEEcCCC-----c-----HHHH----HHHHHHHHHCCCCeEE
Confidence 999976541 1 2232 456667777764 554
|
| >3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=97.75 E-value=9.1e-05 Score=72.14 Aligned_cols=118 Identities=9% Similarity=0.008 Sum_probs=75.8
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCC-ceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcC
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDM-FSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQG 83 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~ 83 (485)
+.+|||.|+|++|++|+.++..++.+|. .+|.++|........ ....+........++.+ . . +..+++++
T Consensus 6 ~~~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~~k~~g--~a~DL~~~~~~~~~i~~-t---~---d~~~al~d 76 (343)
T 3fi9_A 6 LTEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEG--VAEEIRHCGFEGLNLTF-T---S---DIKEALTD 76 (343)
T ss_dssp SCSSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCHHHHHH--HHHHHHHHCCTTCCCEE-E---S---CHHHHHTT
T ss_pred cCCCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCchhHHH--HHHhhhhCcCCCCceEE-c---C---CHHHHhCC
Confidence 4468999999999999999999999884 379999875431100 00001110011112221 1 1 35677899
Q ss_pred CCEEEEcCCCC-CCCCchhhhHHHHHHHHHHHHHHHHhcCCCE--EEEecC
Q 047227 84 AEVVFHMAAPN-SSINNHKLHHSVNVEGTKNVIDACAELKVKR--LIYTSS 131 (485)
Q Consensus 84 ~d~Vih~aa~~-~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r--~V~~SS 131 (485)
+|+||.+||.. ............|+...+.+.+.+.+.+.+- ++.+|-
T Consensus 77 ADvVvitaG~p~kpG~~R~dLl~~N~~I~~~i~~~i~~~~p~a~~vlvvsN 127 (343)
T 3fi9_A 77 AKYIVSSGGAPRKEGMTREDLLKGNAEIAAQLGKDIKSYCPDCKHVIIIFN 127 (343)
T ss_dssp EEEEEECCC-------CHHHHHHHHHHHHHHHHHHHHHHCTTCCEEEECSS
T ss_pred CCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhccCcEEEEEecC
Confidence 99999999943 3334456778999999999999999987543 455543
|
| >1u7z_A Coenzyme A biosynthesis bifunctional protein coabc; ligase; HET: PMT; 2.30A {Escherichia coli} SCOP: c.72.3.1 PDB: 1u7w_A* 1u7u_A* 1u80_A* | Back alignment and structure |
|---|
Probab=97.75 E-value=7.7e-05 Score=67.91 Aligned_cols=72 Identities=17% Similarity=0.111 Sum_probs=53.9
Q ss_pred CCCCEEEEEcC----------------CCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEE
Q 047227 5 ENERLCVVTGG----------------RGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVS 68 (485)
Q Consensus 5 ~~~~~iLVtGg----------------tG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 68 (485)
..+|+|||||| +|.+|.++++.|.++| ++|+++++... ... ..++. .
T Consensus 6 l~gk~vlVTgG~T~E~iDpVR~itN~SSg~iG~aiA~~~~~~G-a~V~l~~~~~~--l~~------------~~g~~--~ 68 (226)
T 1u7z_A 6 LKHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRG-ANVTLVSGPVS--LPT------------PPFVK--R 68 (226)
T ss_dssp TTTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTT-CEEEEEECSCC--CCC------------CTTEE--E
T ss_pred CCCCEEEEECCCCCcccCceeeccCCCccHHHHHHHHHHHHCC-CEEEEEECCcc--ccc------------CCCCe--E
Confidence 46789999999 7999999999999999 68988876532 110 11333 4
Q ss_pred ecCCCHHHHHHH----hcCCCEEEEcCCC
Q 047227 69 FDLRHKAQVLQA----LQGAEVVFHMAAP 93 (485)
Q Consensus 69 ~Dl~d~~~l~~~----~~~~d~Vih~aa~ 93 (485)
.|+.+.+++.+. +.+.|++||+||.
T Consensus 69 ~dv~~~~~~~~~v~~~~~~~Dili~~Aav 97 (226)
T 1u7z_A 69 VDVMTALEMEAAVNASVQQQNIFIGCAAV 97 (226)
T ss_dssp EECCSHHHHHHHHHHHGGGCSEEEECCBC
T ss_pred EccCcHHHHHHHHHHhcCCCCEEEECCcc
Confidence 688887665544 3469999999994
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=97.74 E-value=8.9e-05 Score=62.52 Aligned_cols=74 Identities=18% Similarity=0.130 Sum_probs=58.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHH-hcCC
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQA-LQGA 84 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~-~~~~ 84 (485)
..++|+|.| .|.+|+.+++.|.+.| +.|+++++.+.. ...+...++..+.+|.++++.+.++ ++++
T Consensus 6 ~~~~viIiG-~G~~G~~la~~L~~~g-~~v~vid~~~~~-----------~~~~~~~g~~~i~gd~~~~~~l~~a~i~~a 72 (140)
T 3fwz_A 6 ICNHALLVG-YGRVGSLLGEKLLASD-IPLVVIETSRTR-----------VDELRERGVRAVLGNAANEEIMQLAHLECA 72 (140)
T ss_dssp CCSCEEEEC-CSHHHHHHHHHHHHTT-CCEEEEESCHHH-----------HHHHHHTTCEEEESCTTSHHHHHHTTGGGC
T ss_pred CCCCEEEEC-cCHHHHHHHHHHHHCC-CCEEEEECCHHH-----------HHHHHHcCCCEEECCCCCHHHHHhcCcccC
Confidence 346899998 5999999999999999 599999987541 1222335788999999999988775 5779
Q ss_pred CEEEEcCC
Q 047227 85 EVVFHMAA 92 (485)
Q Consensus 85 d~Vih~aa 92 (485)
|+||-+.+
T Consensus 73 d~vi~~~~ 80 (140)
T 3fwz_A 73 KWLILTIP 80 (140)
T ss_dssp SEEEECCS
T ss_pred CEEEEECC
Confidence 99997664
|
| >3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00049 Score=66.56 Aligned_cols=114 Identities=12% Similarity=0.112 Sum_probs=76.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCc-eEEEeecCCccccCCccchhhhhhhh--cCCCeEEEEecCCCHHHHHHHhc
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMF-SVRIADLSDSIALEPHEEQGILGEAL--RSGRAHYVSFDLRHKAQVLQALQ 82 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~-~V~~~~r~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~Dl~d~~~l~~~~~ 82 (485)
.+|||.|+|+ |++|+.++..|...|.. +|.++|+........ ... +.+.. ...+++....| .++++
T Consensus 4 ~~~kI~ViGa-G~vG~~~a~~l~~~~~~~~l~l~D~~~~k~~g~--a~D-L~~~~~~~~~~v~i~~~~-------~~a~~ 72 (326)
T 3pqe_A 4 HVNKVALIGA-GFVGSSYAFALINQGITDELVVIDVNKEKAMGD--VMD-LNHGKAFAPQPVKTSYGT-------YEDCK 72 (326)
T ss_dssp SCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHH--HHH-HHHTGGGSSSCCEEEEEC-------GGGGT
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEecchHHHHHH--HHH-HHhccccccCCeEEEeCc-------HHHhC
Confidence 3589999995 99999999999998853 899998864311100 000 11111 11344544433 24678
Q ss_pred CCCEEEEcCCCCC-CCCchhhhHHHHHHHHHHHHHHHHhcCCC-EEEEec
Q 047227 83 GAEVVFHMAAPNS-SINNHKLHHSVNVEGTKNVIDACAELKVK-RLIYTS 130 (485)
Q Consensus 83 ~~d~Vih~aa~~~-~~~~~~~~~~~nv~~t~~ll~a~~~~~v~-r~V~~S 130 (485)
++|+||.+++... ...+....+..|+...+.+.+.+.+.+.+ .++.+|
T Consensus 73 ~aDvVvi~ag~p~kpG~~R~dL~~~N~~Iv~~i~~~I~~~~p~a~vlvvt 122 (326)
T 3pqe_A 73 DADIVCICAGANQKPGETRLELVEKNLKIFKGIVSEVMASGFDGIFLVAT 122 (326)
T ss_dssp TCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECS
T ss_pred CCCEEEEecccCCCCCccHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEcC
Confidence 9999999999433 33445667899999999999999998754 444444
|
| >4ggo_A Trans-2-enoyl-COA reductase; rossmann fold, oxidoreductase; 2.00A {Treponema denticola atcc 35405} PDB: 4ggp_A | Back alignment and structure |
|---|
Probab=97.32 E-value=0.0012 Score=64.75 Aligned_cols=86 Identities=10% Similarity=-0.047 Sum_probs=60.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHH-hcCCceEEEeecCCccccCCccchhh-----hhhh--hcCCCeEEEEecCCCHHHH
Q 047227 6 NERLCVVTGGRGFAARHLVEMLI-RYDMFSVRIADLSDSIALEPHEEQGI-----LGEA--LRSGRAHYVSFDLRHKAQV 77 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll-~~G~~~V~~~~r~~~~~~~~~~~~~~-----~~~~--~~~~~v~~~~~Dl~d~~~l 77 (485)
.+|++|||||+.-+|.+.+..|. +.| ..|.++.+............++ .... ........+.+|+.|.+++
T Consensus 49 ~pK~vLVtGaSsGiGlA~AialAf~~G-A~vi~v~~~~~~~~~~~atag~~~~~a~~~~i~~~G~~a~~i~~Dv~d~e~i 127 (401)
T 4ggo_A 49 APKNVLVLGCSNGYGLASRITAAFGYG-AATIGVSFEKAGSETKYGTPGWYNNLAFDEAAKREGLYSVTIDGDAFSDEIK 127 (401)
T ss_dssp CCCEEEEESCSSHHHHHHHHHHHHHHC-CEEEEEECCCCCCSSSCCCHHHHHHHHHHHHHHHHTCCEEEEESCTTSHHHH
T ss_pred CCCEEEEECCCCcHHHHHHHHHHhhCC-CCEEEEecCCcccccccccccchhHHHHHHHHHHcCCCceeEeCCCCCHHHH
Confidence 46899999999999999998887 567 5777777755432221111111 1111 1245788999999999888
Q ss_pred HHHhc-------CCCEEEEcCC
Q 047227 78 LQALQ-------GAEVVFHMAA 92 (485)
Q Consensus 78 ~~~~~-------~~d~Vih~aa 92 (485)
.++++ +.|++||.+|
T Consensus 128 ~~vi~~i~~~~G~IDiLVhS~A 149 (401)
T 4ggo_A 128 AQVIEEAKKKGIKFDLIVYSLA 149 (401)
T ss_dssp HHHHHHHHHTTCCEEEEEECCC
T ss_pred HHHHHHHHHhcCCCCEEEEecc
Confidence 87764 4899999999
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=97.28 E-value=0.0008 Score=67.40 Aligned_cols=91 Identities=14% Similarity=0.070 Sum_probs=68.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHH-hcCCC
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQA-LQGAE 85 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~-~~~~d 85 (485)
+++|+|.| .|.+|+.+++.|.+.| ..|+++++.+.. ...+...++..+.||.++++.+.++ ++++|
T Consensus 4 ~~~viIiG-~Gr~G~~va~~L~~~g-~~vvvId~d~~~-----------v~~~~~~g~~vi~GDat~~~~L~~agi~~A~ 70 (413)
T 3l9w_A 4 GMRVIIAG-FGRFGQITGRLLLSSG-VKMVVLDHDPDH-----------IETLRKFGMKVFYGDATRMDLLESAGAAKAE 70 (413)
T ss_dssp CCSEEEEC-CSHHHHHHHHHHHHTT-CCEEEEECCHHH-----------HHHHHHTTCCCEESCTTCHHHHHHTTTTTCS
T ss_pred CCeEEEEC-CCHHHHHHHHHHHHCC-CCEEEEECCHHH-----------HHHHHhCCCeEEEcCCCCHHHHHhcCCCccC
Confidence 47899998 5999999999999999 589999987541 1222345788999999999999887 78899
Q ss_pred EEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCC
Q 047227 86 VVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVK 124 (485)
Q Consensus 86 ~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~ 124 (485)
+||-+.. +. .....++..+++.+..
T Consensus 71 ~viv~~~------~~--------~~n~~i~~~ar~~~p~ 95 (413)
T 3l9w_A 71 VLINAID------DP--------QTNLQLTEMVKEHFPH 95 (413)
T ss_dssp EEEECCS------SH--------HHHHHHHHHHHHHCTT
T ss_pred EEEECCC------Ch--------HHHHHHHHHHHHhCCC
Confidence 9997654 11 2233567777777754
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00033 Score=62.63 Aligned_cols=99 Identities=16% Similarity=0.121 Sum_probs=63.2
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHH---HHHHHh
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKA---QVLQAL 81 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~---~l~~~~ 81 (485)
.++++|||+||+|-+|..+++.+...| .+|.++++..... . .....+... ..|..+.+ .+.+..
T Consensus 37 ~~g~~vlV~Ga~ggiG~~~~~~~~~~G-~~V~~~~~~~~~~----------~-~~~~~g~~~-~~d~~~~~~~~~~~~~~ 103 (198)
T 1pqw_A 37 SPGERVLIHSATGGVGMAAVSIAKMIG-ARIYTTAGSDAKR----------E-MLSRLGVEY-VGDSRSVDFADEILELT 103 (198)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHHT-CEEEEEESSHHHH----------H-HHHTTCCSE-EEETTCSTHHHHHHHHT
T ss_pred CCCCEEEEeeCCChHHHHHHHHHHHcC-CEEEEEeCCHHHH----------H-HHHHcCCCE-EeeCCcHHHHHHHHHHh
Confidence 356899999999999999999999999 5898888764311 0 111112222 24666543 333433
Q ss_pred c--CCCEEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCcc
Q 047227 82 Q--GAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPS 133 (485)
Q Consensus 82 ~--~~d~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~ 133 (485)
. ++|+||++++. . .....++.++..| ++|.+++..
T Consensus 104 ~~~~~D~vi~~~g~-------~--------~~~~~~~~l~~~G--~~v~~g~~~ 140 (198)
T 1pqw_A 104 DGYGVDVVLNSLAG-------E--------AIQRGVQILAPGG--RFIELGKKD 140 (198)
T ss_dssp TTCCEEEEEECCCT-------H--------HHHHHHHTEEEEE--EEEECSCGG
T ss_pred CCCCCeEEEECCch-------H--------HHHHHHHHhccCC--EEEEEcCCC
Confidence 2 59999999861 0 1234455555444 889888754
|
| >2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00099 Score=65.09 Aligned_cols=100 Identities=15% Similarity=0.170 Sum_probs=60.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcC-----CceEEEeecCCccccCCccchhhhhhhhcC-CCeEEEEecCCCHHHHHH
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYD-----MFSVRIADLSDSIALEPHEEQGILGEALRS-GRAHYVSFDLRHKAQVLQ 79 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G-----~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~Dl~d~~~l~~ 79 (485)
++|+|.|.|+||++|+.+++.|.+++ +.+++.+.+.++......... ..+.. ..+.. .|+ +++
T Consensus 8 ~m~kVaIvGATG~vG~~llr~L~~~~~~~~~~~ei~~l~s~~~agk~~~~~~----~~l~~~~~~~~--~~~-~~~---- 76 (352)
T 2nqt_A 8 NATKVAVAGASGYAGGEILRLLLGHPAYADGRLRIGALTAATSAGSTLGEHH----PHLTPLAHRVV--EPT-EAA---- 76 (352)
T ss_dssp SCEEEEEETTTSHHHHHHHHHHHTCHHHHTTSEEEEEEEESSCTTSBGGGTC----TTCGGGTTCBC--EEC-CHH----
T ss_pred cCCEEEEECCCCHHHHHHHHHHHcCCCCCCccEEEEEEECCCcCCCchhhhc----ccccccceeee--ccC-CHH----
Confidence 35799999999999999999999887 557777654322111000000 00100 12222 233 333
Q ss_pred HhcCCCEEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCcc
Q 047227 80 ALQGAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPS 133 (485)
Q Consensus 80 ~~~~~d~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~ 133 (485)
.+.++|+||.+.+... +..++..+ +.|+ ++|-.|+..
T Consensus 77 ~~~~~DvVf~alg~~~---------------s~~~~~~~-~~G~-~vIDlSa~~ 113 (352)
T 2nqt_A 77 VLGGHDAVFLALPHGH---------------SAVLAQQL-SPET-LIIDCGADF 113 (352)
T ss_dssp HHTTCSEEEECCTTSC---------------CHHHHHHS-CTTS-EEEECSSTT
T ss_pred HhcCCCEEEECCCCcc---------------hHHHHHHH-hCCC-EEEEECCCc
Confidence 2568999998887332 23567777 7785 788888764
|
| >3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00067 Score=65.53 Aligned_cols=115 Identities=12% Similarity=0.152 Sum_probs=65.6
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCc-eEEEeecCCccccCCccchhhhhhhh-cCCCeEEEEecCCCHHHHHHHhc
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMF-SVRIADLSDSIALEPHEEQGILGEAL-RSGRAHYVSFDLRHKAQVLQALQ 82 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~-~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~ 82 (485)
..+|||.|+|+ |.+|+.++..|...|.. ++.++|+..........+ +.+.. ...++.....| .+.++
T Consensus 7 ~~~~kV~ViGa-G~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~D---L~~~~~~~~~~~i~~~~-------~~a~~ 75 (326)
T 3vku_A 7 KDHQKVILVGD-GAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAID---LEDALPFTSPKKIYSAE-------YSDAK 75 (326)
T ss_dssp CCCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHH---HHTTGGGSCCCEEEECC-------GGGGT
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHhh---HhhhhhhcCCcEEEECc-------HHHhc
Confidence 45689999995 99999999999998853 899998854311100000 11110 01244444333 24688
Q ss_pred CCCEEEEcCCCC-CCCCchhhhHHHHHHHHHHHHHHHHhcCCC-EEEEec
Q 047227 83 GAEVVFHMAAPN-SSINNHKLHHSVNVEGTKNVIDACAELKVK-RLIYTS 130 (485)
Q Consensus 83 ~~d~Vih~aa~~-~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~-r~V~~S 130 (485)
++|+||.+|+.. .........++.|+.-.+.+.+.+.+.+.+ .++.+|
T Consensus 76 ~aDiVvi~ag~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~ilvvt 125 (326)
T 3vku_A 76 DADLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAA 125 (326)
T ss_dssp TCSEEEECCCCC----------------CHHHHHHHHHTTTCCSEEEECS
T ss_pred CCCEEEECCCCCCCCCchHHHHHHHHHHHHHHHHHHHHhcCCceEEEEcc
Confidence 999999999943 233345567889999999999999988754 344443
|
| >1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A* | Back alignment and structure |
|---|
Probab=97.20 E-value=0.0017 Score=62.49 Aligned_cols=113 Identities=14% Similarity=0.151 Sum_probs=71.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhh--cCCCeEEEE-ecCCCHHHHHHHhcCC
Q 047227 8 RLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEAL--RSGRAHYVS-FDLRHKAQVLQALQGA 84 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~--~~~~v~~~~-~Dl~d~~~l~~~~~~~ 84 (485)
|||.|+|+ |++|..++..|...|+..|.++|+....... .... +.+.. .....+... .| . ++++++
T Consensus 3 ~kI~VIGa-G~vG~~~a~~la~~g~~~v~L~Di~~~~~~g--~~~d-l~~~~~~~~~~~~i~~t~d------~-~a~~~a 71 (309)
T 1ur5_A 3 KKISIIGA-GFVGSTTAHWLAAKELGDIVLLDIVEGVPQG--KALD-LYEASPIEGFDVRVTGTNN------Y-ADTANS 71 (309)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSSSSHHHH--HHHH-HHTTHHHHTCCCCEEEESC------G-GGGTTC
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCCCeEEEEeCCccHHHH--HHHh-HHHhHhhcCCCeEEEECCC------H-HHHCCC
Confidence 79999997 9999999999999996469999876432110 0000 11100 011222222 23 2 457899
Q ss_pred CEEEEcCCCCCC-CCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecC
Q 047227 85 EVVFHMAAPNSS-INNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSS 131 (485)
Q Consensus 85 d~Vih~aa~~~~-~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS 131 (485)
|+||..++.... ..........|+...+.+.+.+.+.+.+.++.+.|
T Consensus 72 D~Vi~a~g~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~vi~~t 119 (309)
T 1ur5_A 72 DVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVN 119 (309)
T ss_dssp SEEEECCCC--------CHHHHHHHHHHHHHHHHHGGGCTTCEEEECC
T ss_pred CEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEcC
Confidence 999999984332 22334556888999999999999887665555544
|
| >1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* | Back alignment and structure |
|---|
Probab=97.08 E-value=0.006 Score=59.16 Aligned_cols=114 Identities=12% Similarity=0.101 Sum_probs=72.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhh---h-cCCCeEEEEecCCCHHHHHHHhc
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEA---L-RSGRAHYVSFDLRHKAQVLQALQ 82 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~---~-~~~~v~~~~~Dl~d~~~l~~~~~ 82 (485)
.|||.|+|+ |.+|..++..|...|+..|.++|+........... +.+. + ...++.. . .| +.++++
T Consensus 9 ~~kI~VIGa-G~vG~~lA~~la~~g~~~V~L~D~~~~~~~~~~~~---l~~~~~~~~~~~~i~~-t---~d---~~ea~~ 77 (331)
T 1pzg_A 9 RKKVAMIGS-GMIGGTMGYLCALRELADVVLYDVVKGMPEGKALD---LSHVTSVVDTNVSVRA-E---YS---YEAALT 77 (331)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHH---HHHHHHHTTCCCCEEE-E---CS---HHHHHT
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEECChhHHHHHHHH---HHhhhhccCCCCEEEE-e---CC---HHHHhC
Confidence 479999997 99999999999999964799999875422110000 1111 1 1112222 1 23 445789
Q ss_pred CCCEEEEcCCCCC-CCC-----chhhhHHHHHHHHHHHHHHHHhcCCCEEEEecC
Q 047227 83 GAEVVFHMAAPNS-SIN-----NHKLHHSVNVEGTKNVIDACAELKVKRLIYTSS 131 (485)
Q Consensus 83 ~~d~Vih~aa~~~-~~~-----~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS 131 (485)
++|+||-.++... ... ........|+.-.+.+.+.+.+...+-++...|
T Consensus 78 ~aDiVi~a~g~p~~~g~~~~~~~r~dl~~~n~~i~~~i~~~i~~~~p~a~vi~~t 132 (331)
T 1pzg_A 78 GADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVT 132 (331)
T ss_dssp TCSEEEECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECC
T ss_pred CCCEEEEccCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEEc
Confidence 9999999997332 222 345567888888999999988876443443333
|
| >4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major} | Back alignment and structure |
|---|
Probab=97.07 E-value=0.0032 Score=61.18 Aligned_cols=121 Identities=19% Similarity=0.185 Sum_probs=76.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCc------eEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHH
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMF------SVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQ 79 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~------~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~ 79 (485)
+.-||.|+||+|.||+.++..|...... ++.++|..+........... +.+.........+.++ | ..+
T Consensus 23 ~~vKVaViGAaG~IG~~la~~la~~~l~~~~~~~eL~L~Di~~~~~~~~Gva~D-L~~~~~~~~~~~~~~~--~---~~~ 96 (345)
T 4h7p_A 23 SAVKVAVTGAAGQIGYALVPLIARGALLGPTTPVELRLLDIEPALKALAGVEAE-LEDCAFPLLDKVVVTA--D---PRV 96 (345)
T ss_dssp CCEEEEEESTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHH-HHHTTCTTEEEEEEES--C---HHH
T ss_pred CCCEEEEECcCcHHHHHHHHHHHhccccCCCCccEEEEECCCCccccchhhhhh-hhhcCccCCCcEEEcC--C---hHH
Confidence 3459999999999999999887765321 68888765321000000000 1111111122233332 2 356
Q ss_pred HhcCCCEEEEcCC-CCCCCCchhhhHHHHHHHHHHHHHHHHhcC-C-CEEEEecCc
Q 047227 80 ALQGAEVVFHMAA-PNSSINNHKLHHSVNVEGTKNVIDACAELK-V-KRLIYTSSP 132 (485)
Q Consensus 80 ~~~~~d~Vih~aa-~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~-v-~r~V~~SS~ 132 (485)
+++++|+||-.|| +..........++.|+.-.+.+.+++.+.. . .+++.+|-+
T Consensus 97 a~~~advVvi~aG~prkpGmtR~DLl~~Na~I~~~~~~~i~~~a~~~~~vlvvsNP 152 (345)
T 4h7p_A 97 AFDGVAIAIMCGAFPRKAGMERKDLLEMNARIFKEQGEAIAAVAASDCRVVVVGNP 152 (345)
T ss_dssp HTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSS
T ss_pred HhCCCCEEEECCCCCCCCCCCHHHHHHHhHHHHHHHHHHHHhhccCceEEEEeCCC
Confidence 7899999999999 444555677889999999999999998864 2 245555543
|
| >1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A | Back alignment and structure |
|---|
Probab=97.04 E-value=0.0015 Score=63.62 Aligned_cols=92 Identities=17% Similarity=0.187 Sum_probs=67.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHH-hcCCC
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQA-LQGAE 85 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~-~~~~d 85 (485)
.++++|.|+ |.+|+.+++.|.++| + |+++++++.. .+ +...++.++.+|.+|++.+.++ ++++|
T Consensus 115 ~~~viI~G~-G~~g~~l~~~L~~~g-~-v~vid~~~~~-----------~~-~~~~~~~~i~gd~~~~~~L~~a~i~~a~ 179 (336)
T 1lnq_A 115 SRHVVICGW-SESTLECLRELRGSE-V-FVLAEDENVR-----------KK-VLRSGANFVHGDPTRVSDLEKANVRGAR 179 (336)
T ss_dssp -CEEEEESC-CHHHHHHHTTGGGSC-E-EEEESCGGGH-----------HH-HHHTTCEEEESCTTSHHHHHHTCSTTEE
T ss_pred cCCEEEECC-cHHHHHHHHHHHhCC-c-EEEEeCChhh-----------hh-HHhCCcEEEEeCCCCHHHHHhcChhhcc
Confidence 358999995 999999999999999 5 8888776541 12 3346789999999999999988 78899
Q ss_pred EEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCC-EEE
Q 047227 86 VVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVK-RLI 127 (485)
Q Consensus 86 ~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~-r~V 127 (485)
+|+-+.+ +. +.|+ .+...+++.+++ +++
T Consensus 180 ~vi~~~~------~d----~~n~----~~~~~ar~~~~~~~ii 208 (336)
T 1lnq_A 180 AVIVDLE------SD----SETI----HCILGIRKIDESVRII 208 (336)
T ss_dssp EEEECCS------SH----HHHH----HHHHHHHTTCTTSEEE
T ss_pred EEEEcCC------cc----HHHH----HHHHHHHHHCCCCeEE
Confidence 9997653 11 2222 456677777764 544
|
| >3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A* | Back alignment and structure |
|---|
Probab=97.01 E-value=0.0019 Score=62.05 Aligned_cols=113 Identities=19% Similarity=0.137 Sum_probs=74.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHhc-CC-ceEEEeecCCccccCCccchhhhhhhhcCC-CeEEEEecCCCHHHHHHHhcCC
Q 047227 8 RLCVVTGGRGFAARHLVEMLIRY-DM-FSVRIADLSDSIALEPHEEQGILGEALRSG-RAHYVSFDLRHKAQVLQALQGA 84 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~~-G~-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~Dl~d~~~l~~~~~~~ 84 (485)
|||.|+||+|.+|..++..|..+ +. .++.++|.... .. +...+....+ ..+.....=.+ ..+.++++
T Consensus 1 mKV~IiGAaG~VG~~~a~~L~~~~~~~~el~L~Di~~~-~~------G~a~Dl~~~~~~~~v~~~~~~~---~~~~~~~a 70 (312)
T 3hhp_A 1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPV-TP------GVAVDLSHIPTAVKIKGFSGED---ATPALEGA 70 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCTTEEEEEECSSTT-HH------HHHHHHHTSCSSEEEEEECSSC---CHHHHTTC
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCCceEEEEecCCC-ch------hHHHHhhCCCCCceEEEecCCC---cHHHhCCC
Confidence 68999999999999999988875 42 37899988641 10 1111111111 22222110011 24567899
Q ss_pred CEEEEcCCC-CCCCCchhhhHHHHHHHHHHHHHHHHhcCCC-EEEEec
Q 047227 85 EVVFHMAAP-NSSINNHKLHHSVNVEGTKNVIDACAELKVK-RLIYTS 130 (485)
Q Consensus 85 d~Vih~aa~-~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~-r~V~~S 130 (485)
|+||-.|+. .....+....++.|+.-.+.+.+++.+.+.+ .++.+|
T Consensus 71 Divii~ag~~rkpG~~R~dll~~N~~I~~~i~~~i~~~~p~a~vlvvt 118 (312)
T 3hhp_A 71 DVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIIT 118 (312)
T ss_dssp SEEEECCSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECS
T ss_pred CEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEec
Confidence 999999994 3344566778899999999999999988743 455444
|
| >3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A* | Back alignment and structure |
|---|
Probab=97.00 E-value=0.0038 Score=60.18 Aligned_cols=114 Identities=14% Similarity=0.106 Sum_probs=74.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCC-ceEEEeecCCccccCCccchhhhhhh--hcCCCeEEEEecCCCHHHHHHHhc
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDM-FSVRIADLSDSIALEPHEEQGILGEA--LRSGRAHYVSFDLRHKAQVLQALQ 82 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~-~~V~~~~r~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~Dl~d~~~l~~~~~ 82 (485)
++|||.|+|+ |.+|..++..|..+|. .+|.++|........ .... +.+. .....++.. +| + .++++
T Consensus 5 ~~~KI~IIGa-G~vG~~la~~l~~~~~~~ei~L~Di~~~~~~g--~~~d-l~~~~~~~~~~~~v~-~~--~----~~a~~ 73 (317)
T 3d0o_A 5 KGNKVVLIGN-GAVGSSYAFSLVNQSIVDELVIIDLDTEKVRG--DVMD-LKHATPYSPTTVRVK-AG--E----YSDCH 73 (317)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHHCSCSEEEEECSCHHHHHH--HHHH-HHHHGGGSSSCCEEE-EC--C----GGGGT
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHhhh--hhhh-HHhhhhhcCCCeEEE-eC--C----HHHhC
Confidence 4579999998 9999999999998874 379999876431110 0000 1111 111233333 23 2 45688
Q ss_pred CCCEEEEcCCCCC-CCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEec
Q 047227 83 GAEVVFHMAAPNS-SINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTS 130 (485)
Q Consensus 83 ~~d~Vih~aa~~~-~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~S 130 (485)
++|+||-.++... ...........|+.-.+.+.+.+.+....-++.+.
T Consensus 74 ~aDvVvi~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~ 122 (317)
T 3d0o_A 74 DADLVVICAGAAQKPGETRLDLVSKNLKIFKSIVGEVMASKFDGIFLVA 122 (317)
T ss_dssp TCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEEC
T ss_pred CCCEEEECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 9999999999433 33344567789999999999999988754344333
|
| >3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* | Back alignment and structure |
|---|
Probab=96.95 E-value=0.0045 Score=59.73 Aligned_cols=117 Identities=14% Similarity=0.148 Sum_probs=73.4
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhh--hcCCCeEEEEecCCCHHHHHHHh
Q 047227 4 EENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEA--LRSGRAHYVSFDLRHKAQVLQAL 81 (485)
Q Consensus 4 ~~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~Dl~d~~~l~~~~ 81 (485)
++++|||.|+|+ |.+|..++..|...|+.+|.++|+....... .... +.+. +.....+....+ | . +++
T Consensus 4 ~m~~~kI~viGa-G~vG~~~a~~l~~~~~~~v~L~Di~~~~~~g--~~~d-l~~~~~~~~~~~~v~~t~--d---~-~a~ 73 (324)
T 3gvi_A 4 SMARNKIALIGS-GMIGGTLAHLAGLKELGDVVLFDIAEGTPQG--KGLD-IAESSPVDGFDAKFTGAN--D---Y-AAI 73 (324)
T ss_dssp --CCCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSSSHHHH--HHHH-HHHHHHHHTCCCCEEEES--S---G-GGG
T ss_pred CCcCCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEeCCchhHHH--HHHH-HhchhhhcCCCCEEEEeC--C---H-HHH
Confidence 345689999997 9999999999999984389999987542210 0000 1111 111122332211 2 2 578
Q ss_pred cCCCEEEEcCCCC-CCCCchhhhHHHHHHHHHHHHHHHHhcCCC-EEEEec
Q 047227 82 QGAEVVFHMAAPN-SSINNHKLHHSVNVEGTKNVIDACAELKVK-RLIYTS 130 (485)
Q Consensus 82 ~~~d~Vih~aa~~-~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~-r~V~~S 130 (485)
+++|+||..++.. .........+..|+.-.+.+.+.+.+.+.. .++.+|
T Consensus 74 ~~aDiVIiaag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvt 124 (324)
T 3gvi_A 74 EGADVVIVTAGVPRKPGMSRDDLLGINLKVMEQVGAGIKKYAPEAFVICIT 124 (324)
T ss_dssp TTCSEEEECCSCCCC-----CHHHHHHHHHHHHHHHHHHHHCTTCEEEECC
T ss_pred CCCCEEEEccCcCCCCCCCHHHHHHhhHHHHHHHHHHHHHHCCCeEEEecC
Confidence 8999999999843 333345567889999999999999988743 455444
|
| >3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0061 Score=58.75 Aligned_cols=116 Identities=11% Similarity=0.085 Sum_probs=75.8
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhh--hcCCCeEEEEecCCCHHHHHHHhc
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEA--LRSGRAHYVSFDLRHKAQVLQALQ 82 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~Dl~d~~~l~~~~~ 82 (485)
+++|||.|+| +|.+|..++..|...|..+|.++|+........ ... +.+. +.....+....+ | .++++
T Consensus 3 m~~~kI~iiG-aG~vG~~~a~~l~~~~~~~v~l~Di~~~~~~g~--a~d-L~~~~~~~~~~~~v~~t~--d----~~a~~ 72 (321)
T 3p7m_A 3 MARKKITLVG-AGNIGGTLAHLALIKQLGDVVLFDIAQGMPNGK--ALD-LLQTCPIEGVDFKVRGTN--D----YKDLE 72 (321)
T ss_dssp CCCCEEEEEC-CSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHH--HHH-HHTTHHHHTCCCCEEEES--C----GGGGT
T ss_pred CCCCEEEEEC-CCHHHHHHHHHHHhCCCceEEEEeCChHHHHHH--HHH-HHhhhhhcCCCcEEEEcC--C----HHHHC
Confidence 3468999999 699999999999998833899998875422100 000 1111 111223332211 2 25788
Q ss_pred CCCEEEEcCCCC-CCCCchhhhHHHHHHHHHHHHHHHHhcCCC-EEEEec
Q 047227 83 GAEVVFHMAAPN-SSINNHKLHHSVNVEGTKNVIDACAELKVK-RLIYTS 130 (485)
Q Consensus 83 ~~d~Vih~aa~~-~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~-r~V~~S 130 (485)
++|+||..++.. .........+..|+.-.+.+.+.+.+.... .++.+|
T Consensus 73 ~aDvVIi~ag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvt 122 (321)
T 3p7m_A 73 NSDVVIVTAGVPRKPGMSRDDLLGINIKVMQTVGEGIKHNCPNAFVICIT 122 (321)
T ss_dssp TCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECC
T ss_pred CCCEEEEcCCcCCCCCCCHHHHHHHhHHHHHHHHHHHHHHCCCcEEEEec
Confidence 999999999943 333455667889999999999999998754 455444
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.92 E-value=0.0012 Score=65.30 Aligned_cols=76 Identities=16% Similarity=0.203 Sum_probs=56.6
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCC
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGA 84 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 84 (485)
..+++|+|+|+ |-+|..+++.|...| .+|+++++...... .....+ +.. +.+|..+.+++.++++++
T Consensus 164 l~~~~V~ViGa-G~iG~~~a~~l~~~G-a~V~~~d~~~~~~~-------~~~~~~---g~~-~~~~~~~~~~l~~~~~~~ 230 (369)
T 2eez_A 164 VAPASVVILGG-GTVGTNAAKIALGMG-AQVTILDVNHKRLQ-------YLDDVF---GGR-VITLTATEANIKKSVQHA 230 (369)
T ss_dssp BCCCEEEEECC-SHHHHHHHHHHHHTT-CEEEEEESCHHHHH-------HHHHHT---TTS-EEEEECCHHHHHHHHHHC
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCC-CEEEEEECCHHHHH-------HHHHhc---Cce-EEEecCCHHHHHHHHhCC
Confidence 34689999998 999999999999999 59999998753110 011111 111 456778888899999999
Q ss_pred CEEEEcCCC
Q 047227 85 EVVFHMAAP 93 (485)
Q Consensus 85 d~Vih~aa~ 93 (485)
|+||++++.
T Consensus 231 DvVi~~~g~ 239 (369)
T 2eez_A 231 DLLIGAVLV 239 (369)
T ss_dssp SEEEECCC-
T ss_pred CEEEECCCC
Confidence 999999883
|
| >1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A* | Back alignment and structure |
|---|
Probab=96.92 E-value=0.0032 Score=59.91 Aligned_cols=113 Identities=13% Similarity=0.091 Sum_probs=75.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCc-eEEEeecCCccccCCccchhhhhhhh--cCCCeEEEEecCCCHHHHHHHhcCC
Q 047227 8 RLCVVTGGRGFAARHLVEMLIRYDMF-SVRIADLSDSIALEPHEEQGILGEAL--RSGRAHYVSFDLRHKAQVLQALQGA 84 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~~G~~-~V~~~~r~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~Dl~d~~~l~~~~~~~ 84 (485)
|||.|+|+ |.+|..++..|...|+. +|.+.|+.+..... .... +.+.. .....+....+ | .++++++
T Consensus 1 MkI~ViGa-G~vG~~la~~l~~~~~~~~v~L~D~~~~~~~g--~~~d-l~~~~~~~~~~~~i~~t~--d----~~a~~~a 70 (294)
T 1oju_A 1 MKLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVG--EAMD-LAHAAAGIDKYPKIVGGA--D----YSLLKGS 70 (294)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHH--HHHH-HHHHHHTTTCCCEEEEES--C----GGGGTTC
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEECChHHHHH--HHHH-HHhhhhhcCCCCEEEEeC--C----HHHhCCC
Confidence 68999998 99999999999998843 89999987542110 0000 11111 11223333221 2 3578899
Q ss_pred CEEEEcCCCC-CCCCchhhhHHHHHHHHHHHHHHHHhcCCC-EEEEec
Q 047227 85 EVVFHMAAPN-SSINNHKLHHSVNVEGTKNVIDACAELKVK-RLIYTS 130 (485)
Q Consensus 85 d~Vih~aa~~-~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~-r~V~~S 130 (485)
|+||..++.. ....+.......|+.-.+.+.+.+.+.+.+ .++.+|
T Consensus 71 DiVViaag~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvs 118 (294)
T 1oju_A 71 EIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVT 118 (294)
T ss_dssp SEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECS
T ss_pred CEEEECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeC
Confidence 9999999944 333456677899999999999999998743 455444
|
| >1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=96.92 E-value=0.0043 Score=59.82 Aligned_cols=115 Identities=15% Similarity=0.135 Sum_probs=69.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCc-eEEEeecCCccccCCccchhhhhhhh-cCCCeEEEEecCCCHHHHHHHhcC
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMF-SVRIADLSDSIALEPHEEQGILGEAL-RSGRAHYVSFDLRHKAQVLQALQG 83 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~-~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~~ 83 (485)
++|||.|+|+ |++|..++..|...|.. +|.++|........ .... +.+.. ....++.. . .+ .+++++
T Consensus 6 ~~~KI~IiGa-G~vG~~~a~~l~~~~~~~ev~L~Di~~~~~~g--~~~d-l~~~~~~~~~~~i~-~--~~----~~a~~~ 74 (318)
T 1y6j_A 6 SRSKVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIG--EAMD-INHGLPFMGQMSLY-A--GD----YSDVKD 74 (318)
T ss_dssp -CCCEEEECC-SHHHHHHHHHHHHTTCSSEEEEECCC---CCH--HHHH-HTTSCCCTTCEEEC-----C----GGGGTT
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChHHHHH--HHHH-HHHhHHhcCCeEEE-E--CC----HHHhCC
Confidence 3579999997 99999999999998742 79999986432110 0000 11110 00133322 1 12 345899
Q ss_pred CCEEEEcCCCCC-CCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecC
Q 047227 84 AEVVFHMAAPNS-SINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSS 131 (485)
Q Consensus 84 ~d~Vih~aa~~~-~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS 131 (485)
+|+||..++... ...........|+...+.+.+.+.+.+..-+|.+.|
T Consensus 75 aDvVii~~g~p~k~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~t 123 (318)
T 1y6j_A 75 CDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVS 123 (318)
T ss_dssp CSEEEECCCC------CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEECS
T ss_pred CCEEEEcCCCCCCCCcCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Confidence 999999999433 223445677899999999999999876443443333
|
| >1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A | Back alignment and structure |
|---|
Probab=96.92 E-value=0.00092 Score=65.64 Aligned_cols=100 Identities=14% Similarity=0.185 Sum_probs=58.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCCC
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGAE 85 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~d 85 (485)
+++||.|.|++|++|+.+++.|.+++..+++.+.+..+......... ..+. ..+ ..|+.-.+ .+.++++|
T Consensus 15 ~~~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~~~~~g~~~~~~~----~~~~-~~v---~~dl~~~~--~~~~~~vD 84 (359)
T 1xyg_A 15 KDIRIGLLGASGYTGAEIVRLLANHPHFQVTLMTADRKAGQSMESVF----PHLR-AQK---LPTLVSVK--DADFSTVD 84 (359)
T ss_dssp CCEEEEEECCSSHHHHHHHHHHHTCSSEEEEEEBCSTTTTSCHHHHC----GGGT-TSC---CCCCBCGG--GCCGGGCS
T ss_pred cCcEEEEECcCCHHHHHHHHHHHcCCCcEEEEEeCchhcCCCHHHhC----chhc-Ccc---cccceecc--hhHhcCCC
Confidence 34699999999999999999999887557776654322111100000 0011 111 13332222 33456899
Q ss_pred EEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCc
Q 047227 86 VVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSP 132 (485)
Q Consensus 86 ~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~ 132 (485)
+||.+.+... +......+ +.|+ ++|-.|+.
T Consensus 85 vVf~atp~~~---------------s~~~a~~~-~aG~-~VId~sa~ 114 (359)
T 1xyg_A 85 AVFCCLPHGT---------------TQEIIKEL-PTAL-KIVDLSAD 114 (359)
T ss_dssp EEEECCCTTT---------------HHHHHHTS-CTTC-EEEECSST
T ss_pred EEEEcCCchh---------------HHHHHHHH-hCCC-EEEECCcc
Confidence 9998886322 13455666 6776 67877764
|
| >2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A* | Back alignment and structure |
|---|
Probab=96.91 E-value=0.0052 Score=58.31 Aligned_cols=114 Identities=13% Similarity=0.071 Sum_probs=75.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCC-ceEEEeecCCccccCCccchhhhhhhh--cCCCeEEEEecCCCHHHHHHHhcCC
Q 047227 8 RLCVVTGGRGFAARHLVEMLIRYDM-FSVRIADLSDSIALEPHEEQGILGEAL--RSGRAHYVSFDLRHKAQVLQALQGA 84 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~~G~-~~V~~~~r~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~Dl~d~~~l~~~~~~~ 84 (485)
|||.|+| +|.||+.++..|+.++. .++.++|........ +... +.+.. ..........+ |. +.++++
T Consensus 1 MKV~IiG-aG~VG~~~a~~l~~~~~~~el~L~Di~~~~~~G--~a~D-L~h~~~~~~~~~~i~~~~--d~----~~~~~a 70 (294)
T 2x0j_A 1 MKLGFVG-AGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVG--EAMD-LAHAAAGIDKYPKIVGGA--DY----SLLKGS 70 (294)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHH--HHHH-HHHHHGGGTCCCEEEEES--CG----GGGTTC
T ss_pred CEEEEEC-cCHHHHHHHHHHHhCCCCCEEEEEeCCCCcchh--hhhh-hhcccccCCCCCeEecCC--CH----HHhCCC
Confidence 6899999 59999999999988875 379999876431110 0000 11111 11122333222 22 357899
Q ss_pred CEEEEcCC-CCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCE-EEEecC
Q 047227 85 EVVFHMAA-PNSSINNHKLHHSVNVEGTKNVIDACAELKVKR-LIYTSS 131 (485)
Q Consensus 85 d~Vih~aa-~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r-~V~~SS 131 (485)
|+||-.|| +..........+..|..-.+.+.+.+.+.+.+- ++.+|-
T Consensus 71 DvVvitAG~prkpGmtR~dLl~~Na~I~~~i~~~i~~~~p~aivlvvsN 119 (294)
T 2x0j_A 71 EIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTN 119 (294)
T ss_dssp SEEEECCCCCCCSSSCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSS
T ss_pred CEEEEecCCCCCCCCchHHHHHHHHHHHHHHHHHHHhcCCceEEEEecC
Confidence 99999999 444556778889999999999999999988544 444443
|
| >1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B* | Back alignment and structure |
|---|
Probab=96.89 E-value=0.0029 Score=58.78 Aligned_cols=109 Identities=14% Similarity=0.125 Sum_probs=67.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCc------------cchhhhhhhhc--CCC--eEEEEec
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPH------------EEQGILGEALR--SGR--AHYVSFD 70 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~------------~~~~~~~~~~~--~~~--v~~~~~D 70 (485)
+++|+|.| .|-+|+++++.|...|.-+++++|+..-...+.. .........+. .+. ++.+..+
T Consensus 31 ~~~VlVvG-~Gg~G~~va~~La~~Gv~~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~~~~ 109 (249)
T 1jw9_B 31 DSRVLIVG-LGGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPVNAL 109 (249)
T ss_dssp HCEEEEEC-CSHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEECSC
T ss_pred CCeEEEEe-eCHHHHHHHHHHHHcCCCeEEEEcCCCcccccCCcccccChhhcCcHHHHHHHHHHHHHCCCcEEEEEecc
Confidence 46899998 6889999999999999658999998752111100 00000111111 233 4455555
Q ss_pred CCCHHHHHHHhcCCCEEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCc
Q 047227 71 LRHKAQVLQALQGAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSP 132 (485)
Q Consensus 71 l~d~~~l~~~~~~~d~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~ 132 (485)
+. .+.+.+.++++|+||.+.. +++ .-..+.++|++.++ .+|+.+..
T Consensus 110 ~~-~~~~~~~~~~~DvVi~~~d------~~~--------~~~~l~~~~~~~~~-p~i~~~~~ 155 (249)
T 1jw9_B 110 LD-DAELAALIAEHDLVLDCTD------NVA--------VRNQLNAGCFAAKV-PLVSGAAI 155 (249)
T ss_dssp CC-HHHHHHHHHTSSEEEECCS------SHH--------HHHHHHHHHHHHTC-CEEEEEEE
T ss_pred CC-HhHHHHHHhCCCEEEEeCC------CHH--------HHHHHHHHHHHcCC-CEEEeeec
Confidence 65 4567778899999998763 211 22356777888875 46665543
|
| >1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.83 E-value=0.0029 Score=62.04 Aligned_cols=40 Identities=25% Similarity=0.287 Sum_probs=28.7
Q ss_pred CCCCCCC-CEEEEEcCCCchHHHHHHHHHhcCCceEEEeec
Q 047227 1 MSGEENE-RLCVVTGGRGFAARHLVEMLIRYDMFSVRIADL 40 (485)
Q Consensus 1 M~~~~~~-~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r 40 (485)
|+...+| +||.|.||+|++|+.+++.|.+++..+|+.+.+
T Consensus 1 m~~~~~M~~kV~IiGAtG~iG~~llr~L~~~p~~ev~~i~~ 41 (354)
T 1ys4_A 1 MSKGEKMKIKVGVLGATGSVGQRFVQLLADHPMFELTALAA 41 (354)
T ss_dssp ------CCEEEEEETTTSHHHHHHHHHHTTCSSEEEEEEEE
T ss_pred CCCcccccceEEEECcCCHHHHHHHHHHhcCCCCEEEEEEc
Confidence 6654433 699999999999999999999876567777754
|
| >3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0073 Score=58.01 Aligned_cols=118 Identities=13% Similarity=0.127 Sum_probs=74.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhh-hcCCCeEEEEecCCCHHHHHHHhcCC
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEA-LRSGRAHYVSFDLRHKAQVLQALQGA 84 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~l~~~~~~~ 84 (485)
+.++|.|+|+ |.+|..++..|...|+.+|+++|+.+...........+.... ......+....+ | .+.++++
T Consensus 7 ~~~kv~ViGa-G~vG~~ia~~l~~~g~~~v~l~D~~~~~~~~~g~a~dl~~~~~~~~~~~~i~~t~--d----~~a~~~a 79 (315)
T 3tl2_A 7 KRKKVSVIGA-GFTGATTAFLLAQKELADVVLVDIPQLENPTKGKALDMLEASPVQGFDANIIGTS--D----YADTADS 79 (315)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECCGGGHHHHHHHHHHHHHHHHHHTCCCCEEEES--C----GGGGTTC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEeccchHHHHHHhhhhHHHhhhhccCCCEEEEcC--C----HHHhCCC
Confidence 3479999995 999999999999998438999988731000000000111110 111122222221 2 2467899
Q ss_pred CEEEEcCCCC-CCCCchhhhHHHHHHHHHHHHHHHHhcCCC-EEEEec
Q 047227 85 EVVFHMAAPN-SSINNHKLHHSVNVEGTKNVIDACAELKVK-RLIYTS 130 (485)
Q Consensus 85 d~Vih~aa~~-~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~-r~V~~S 130 (485)
|+||-+++.. .........+..|+.-.+.+.+.+.+.+.+ .++.+|
T Consensus 80 DvVIiaag~p~kpg~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vlvvs 127 (315)
T 3tl2_A 80 DVVVITAGIARKPGMSRDDLVATNSKIMKSITRDIAKHSPNAIIVVLT 127 (315)
T ss_dssp SEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECC
T ss_pred CEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEECC
Confidence 9999999943 333456678899999999999999988744 455544
|
| >2hjs_A USG-1 protein homolog; aspartate-semialdehyde dehydrogenase, probable hydrolase, PS aeruginosa, structurual genomics; 2.20A {Pseudomonas aeruginosa} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=96.73 E-value=0.004 Score=60.58 Aligned_cols=95 Identities=17% Similarity=0.196 Sum_probs=56.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCc--eEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCC
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMF--SVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGA 84 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 84 (485)
+|+|+|.|+||++|+.+++.|.+++|. +++.+...++. . +. .. + .+......|. |++ .++++
T Consensus 6 ~~kV~IiGAtG~iG~~llr~L~~~~~~~~elv~i~s~~~~--g--~~---~~--~--~g~~i~~~~~-~~~----~~~~~ 69 (340)
T 2hjs_A 6 PLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESA--G--QR---MG--F--AESSLRVGDV-DSF----DFSSV 69 (340)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTT--T--CE---EE--E--TTEEEECEEG-GGC----CGGGC
T ss_pred CcEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEEecCCCC--C--Cc---cc--c--CCcceEEecC-CHH----HhcCC
Confidence 378999999999999999999977653 44444322110 0 00 00 1 1111111222 221 25689
Q ss_pred CEEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCcc
Q 047227 85 EVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPS 133 (485)
Q Consensus 85 d~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~ 133 (485)
|+||-+.+. ..+...+..+.+.|+ ++|-.|+..
T Consensus 70 DvV~~a~g~---------------~~s~~~a~~~~~aG~-kvId~Sa~~ 102 (340)
T 2hjs_A 70 GLAFFAAAA---------------EVSRAHAERARAAGC-SVIDLSGAL 102 (340)
T ss_dssp SEEEECSCH---------------HHHHHHHHHHHHTTC-EEEETTCTT
T ss_pred CEEEEcCCc---------------HHHHHHHHHHHHCCC-EEEEeCCCC
Confidence 999988751 124567778888887 478778753
|
| >4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=96.72 E-value=0.0031 Score=59.23 Aligned_cols=96 Identities=17% Similarity=0.169 Sum_probs=54.9
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEE-eecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcC
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRI-ADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQG 83 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~-~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~ 83 (485)
++++||.|+|++|.+|+.+++.+.+....++.. +++..+........ -+.. ...++.. ..| +.+++++
T Consensus 5 M~mikV~V~Ga~G~MG~~i~~~l~~~~~~eLv~~~d~~~~~~~G~d~g--el~g--~~~gv~v----~~d---l~~ll~~ 73 (272)
T 4f3y_A 5 MSSMKIAIAGASGRMGRMLIEAVLAAPDATLVGALDRTGSPQLGQDAG--AFLG--KQTGVAL----TDD---IERVCAE 73 (272)
T ss_dssp -CCEEEEESSTTSHHHHHHHHHHHHCTTEEEEEEBCCTTCTTTTSBTT--TTTT--CCCSCBC----BCC---HHHHHHH
T ss_pred ccccEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEEecCcccccccHH--HHhC--CCCCcee----cCC---HHHHhcC
Confidence 346899999999999999999998875455554 56653311100000 0000 0012211 123 4455567
Q ss_pred CCEEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEE
Q 047227 84 AEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLI 127 (485)
Q Consensus 84 ~d~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V 127 (485)
+|+||+++. | ..+...++.|.+.|+ ++|
T Consensus 74 ~DVVIDfT~-------p--------~a~~~~~~~al~~G~-~vV 101 (272)
T 4f3y_A 74 ADYLIDFTL-------P--------EGTLVHLDAALRHDV-KLV 101 (272)
T ss_dssp CSEEEECSC-------H--------HHHHHHHHHHHHHTC-EEE
T ss_pred CCEEEEcCC-------H--------HHHHHHHHHHHHcCC-CEE
Confidence 999998863 2 223456777777876 444
|
| >2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.72 E-value=0.0033 Score=61.31 Aligned_cols=97 Identities=13% Similarity=0.167 Sum_probs=58.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcC-CCeEEEEecCCCHHHHHHHhcCCC
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRS-GRAHYVSFDLRHKAQVLQALQGAE 85 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~Dl~d~~~l~~~~~~~d 85 (485)
++||.|.|+||++|+.+++.|.++++.+++.+.+..+......... . .+.. ..+ .+.+.+ + +.++|
T Consensus 4 ~~kV~IiGAtG~iG~~llr~L~~~p~~elv~v~s~~~~g~~~~~~~---~-~~~g~~~~-----~~~~~~---~-~~~vD 70 (345)
T 2ozp_A 4 KKTLSIVGASGYAGGEFLRLALSHPYLEVKQVTSRRFAGEPVHFVH---P-NLRGRTNL-----KFVPPE---K-LEPAD 70 (345)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHTCTTEEEEEEBCSTTTTSBGGGTC---G-GGTTTCCC-----BCBCGG---G-CCCCS
T ss_pred CCEEEEECCCCHHHHHHHHHHHcCCCcEEEEEECchhhCchhHHhC---c-hhcCcccc-----cccchh---H-hcCCC
Confidence 4799999999999999999999887557666655322111111000 0 0111 111 122222 2 47899
Q ss_pred EEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCc
Q 047227 86 VVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSP 132 (485)
Q Consensus 86 ~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~ 132 (485)
+||.+.+... +..+...+.+.|+ ++|-.|+.
T Consensus 71 vV~~a~g~~~---------------s~~~a~~~~~aG~-~VId~Sa~ 101 (345)
T 2ozp_A 71 ILVLALPHGV---------------FAREFDRYSALAP-VLVDLSAD 101 (345)
T ss_dssp EEEECCCTTH---------------HHHTHHHHHTTCS-EEEECSST
T ss_pred EEEEcCCcHH---------------HHHHHHHHHHCCC-EEEEcCcc
Confidence 9998876221 2456667777886 68888874
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.71 E-value=0.0018 Score=63.27 Aligned_cols=75 Identities=16% Similarity=0.169 Sum_probs=49.9
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHH----HHHHH
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKA----QVLQA 80 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~----~l~~~ 80 (485)
..+++|||+|++|-+|..+++.+...| .+|.++++++... ..... -+... ..|..+.+ .+.++
T Consensus 168 ~~g~~vlV~Ga~ggiG~~~~~~a~~~G-a~V~~~~~~~~~~-------~~~~~----~g~~~-~~d~~~~~~~~~~~~~~ 234 (347)
T 2hcy_A 168 MAGHWVAISGAAGGLGSLAVQYAKAMG-YRVLGIDGGEGKE-------ELFRS----IGGEV-FIDFTKEKDIVGAVLKA 234 (347)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECSTTHH-------HHHHH----TTCCE-EEETTTCSCHHHHHHHH
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCC-CcEEEEcCCHHHH-------HHHHH----cCCce-EEecCccHhHHHHHHHH
Confidence 356899999999999999999999999 5899888764311 01111 12222 23666322 23333
Q ss_pred hc-CCCEEEEcCC
Q 047227 81 LQ-GAEVVFHMAA 92 (485)
Q Consensus 81 ~~-~~d~Vih~aa 92 (485)
.. ++|+||++++
T Consensus 235 ~~~~~D~vi~~~g 247 (347)
T 2hcy_A 235 TDGGAHGVINVSV 247 (347)
T ss_dssp HTSCEEEEEECSS
T ss_pred hCCCCCEEEECCC
Confidence 33 5999999987
|
| >1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A* | Back alignment and structure |
|---|
Probab=96.70 E-value=0.00021 Score=64.69 Aligned_cols=35 Identities=14% Similarity=0.214 Sum_probs=31.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCc
Q 047227 8 RLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDS 43 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~ 43 (485)
|+|+|+||+|.+|+.+++.|.+.| ++|++++|...
T Consensus 1 m~i~iiGa~G~~G~~ia~~l~~~g-~~V~~~~r~~~ 35 (212)
T 1jay_A 1 MRVALLGGTGNLGKGLALRLATLG-HEIVVGSRREE 35 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTT-CEEEEEESSHH
T ss_pred CeEEEEcCCCHHHHHHHHHHHHCC-CEEEEEeCCHH
Confidence 589999999999999999999999 58999988644
|
| >2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=96.68 E-value=0.0028 Score=63.74 Aligned_cols=96 Identities=11% Similarity=0.222 Sum_probs=63.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCc---eEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecC--CCHHH-HHHH
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMF---SVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDL--RHKAQ-VLQA 80 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~---~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl--~d~~~-l~~~ 80 (485)
.++|+|.| .|-||+.+++.|.+++.. .|++.|...... . +.... ++++...++ .|.++ +.++
T Consensus 13 ~~rVlIIG-aGgVG~~va~lla~~~dv~~~~I~vaD~~~~~~-----~---~~~~~---g~~~~~~~Vdadnv~~~l~aL 80 (480)
T 2ph5_A 13 KNRFVILG-FGCVGQALMPLIFEKFDIKPSQVTIIAAEGTKV-----D---VAQQY---GVSFKLQQITPQNYLEVIGST 80 (480)
T ss_dssp CSCEEEEC-CSHHHHHHHHHHHHHBCCCGGGEEEEESSCCSC-----C---HHHHH---TCEEEECCCCTTTHHHHTGGG
T ss_pred CCCEEEEC-cCHHHHHHHHHHHhCCCCceeEEEEeccchhhh-----h---HHhhc---CCceeEEeccchhHHHHHHHH
Confidence 46899999 999999999999987533 688887543310 1 11111 345555555 45544 5567
Q ss_pred hcCCCEEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCc
Q 047227 81 LQGAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSP 132 (485)
Q Consensus 81 ~~~~d~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~ 132 (485)
+++.|+|||++-+.. ...++++|.+.|+ -|++++
T Consensus 81 l~~~DvVIN~s~~~~---------------~l~Im~acleaGv---~YlDTa 114 (480)
T 2ph5_A 81 LEENDFLIDVSIGIS---------------SLALIILCNQKGA---LYINAA 114 (480)
T ss_dssp CCTTCEEEECCSSSC---------------HHHHHHHHHHHTC---EEEESS
T ss_pred hcCCCEEEECCcccc---------------CHHHHHHHHHcCC---CEEECC
Confidence 777799999663211 1369999999997 355654
|
| >3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber} | Back alignment and structure |
|---|
Probab=96.64 E-value=0.0074 Score=57.91 Aligned_cols=113 Identities=16% Similarity=0.151 Sum_probs=72.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCc-eEEEeecCCccccCCccchhhhhhh--hcCCCeEEEEecCCCHHHHHHHhcCC
Q 047227 8 RLCVVTGGRGFAARHLVEMLIRYDMF-SVRIADLSDSIALEPHEEQGILGEA--LRSGRAHYVSFDLRHKAQVLQALQGA 84 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~~G~~-~V~~~~r~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~Dl~d~~~l~~~~~~~ 84 (485)
|||.|+|+ |.+|+.++..|...|.. +|.++|+....... .... +.+. ......+....| + .+.++++
T Consensus 1 Mkv~ViGa-G~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g--~a~D-L~~~~~~~~~~~~v~~~~--~----~~a~~~a 70 (314)
T 3nep_X 1 MKVTVIGA-GNVGATVAECVARQDVAKEVVMVDIKDGMPQG--KALD-MRESSPIHGFDTRVTGTN--D----YGPTEDS 70 (314)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCSSEEEEECSSTTHHHH--HHHH-HHHHHHHHTCCCEEEEES--S----SGGGTTC
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCchHHHHH--HHHH-HhccccccCCCcEEEECC--C----HHHhCCC
Confidence 68999995 99999999999988842 89999987542110 0000 1111 111233333222 2 3567899
Q ss_pred CEEEEcCCCC-CCCCchhhhHHHHHHHHHHHHHHHHhcCCC-EEEEec
Q 047227 85 EVVFHMAAPN-SSINNHKLHHSVNVEGTKNVIDACAELKVK-RLIYTS 130 (485)
Q Consensus 85 d~Vih~aa~~-~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~-r~V~~S 130 (485)
|+||-+++.. ....+....+..|+.-.+.+.+.+.+.+.+ .++.+|
T Consensus 71 DvVii~ag~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvt 118 (314)
T 3nep_X 71 DVCIITAGLPRSPGMSRDDLLAKNTEIVGGVTEQFVEGSPDSTIIVVA 118 (314)
T ss_dssp SEEEECCCC-------CHHHHHHHHHHHHHHHHHHHTTCTTCEEEECC
T ss_pred CEEEECCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEecC
Confidence 9999999943 333455677899999999999999988743 444443
|
| >3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A* | Back alignment and structure |
|---|
Probab=96.64 E-value=0.0058 Score=58.65 Aligned_cols=84 Identities=11% Similarity=0.093 Sum_probs=57.0
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCC
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGA 84 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 84 (485)
..++++||+|+ |-+|+.++..|.+.|..+|++++|..+... ....+........+......++.+.+++.+.+.++
T Consensus 152 l~gk~~lVlGa-GG~g~aia~~L~~~Ga~~V~i~nR~~~~~~---~a~~la~~~~~~~~~~~~~~~~~~~~~l~~~l~~a 227 (315)
T 3tnl_A 152 IIGKKMTICGA-GGAATAICIQAALDGVKEISIFNRKDDFYA---NAEKTVEKINSKTDCKAQLFDIEDHEQLRKEIAES 227 (315)
T ss_dssp CTTSEEEEECC-SHHHHHHHHHHHHTTCSEEEEEECSSTTHH---HHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHTC
T ss_pred ccCCEEEEECC-ChHHHHHHHHHHHCCCCEEEEEECCCchHH---HHHHHHHHhhhhcCCceEEeccchHHHHHhhhcCC
Confidence 35789999996 899999999999999448999998732100 00001111111123444556777877788888899
Q ss_pred CEEEEcCC
Q 047227 85 EVVFHMAA 92 (485)
Q Consensus 85 d~Vih~aa 92 (485)
|+||++.+
T Consensus 228 DiIINaTp 235 (315)
T 3tnl_A 228 VIFTNATG 235 (315)
T ss_dssp SEEEECSS
T ss_pred CEEEECcc
Confidence 99998876
|
| >4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ... | Back alignment and structure |
|---|
Probab=96.63 E-value=0.0084 Score=57.93 Aligned_cols=116 Identities=14% Similarity=0.060 Sum_probs=75.8
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCC-ceEEEeecCCccccCCccchhhhhhhh-cCCCeEEEEecCCCHHHHHHHhc
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDM-FSVRIADLSDSIALEPHEEQGILGEAL-RSGRAHYVSFDLRHKAQVLQALQ 82 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~-~~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~ 82 (485)
.+.++|.|+|+ |.+|+.++..|+.+|. .+|.++|......... ... +.+.. .......+..+ |. +.++
T Consensus 17 ~~~~kV~ViGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~--a~D-L~~~~~~~~~~~i~~~~--d~----~~~~ 86 (331)
T 4aj2_A 17 VPQNKITVVGV-GAVGMACAISILMKDLADELALVDVIEDKLKGE--MMD-LQHGSLFLKTPKIVSSK--DY----SVTA 86 (331)
T ss_dssp CCSSEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHH--HHH-HHHTGGGCSCCEEEECS--SG----GGGT
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEeCChHHHHHH--HHh-hhhhhhccCCCeEEEcC--CH----HHhC
Confidence 45689999996 9999999999999885 2799998764311000 000 11110 01122233222 32 2588
Q ss_pred CCCEEEEcCCC-CCCCCchhhhHHHHHHHHHHHHHHHHhcCCC-EEEEec
Q 047227 83 GAEVVFHMAAP-NSSINNHKLHHSVNVEGTKNVIDACAELKVK-RLIYTS 130 (485)
Q Consensus 83 ~~d~Vih~aa~-~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~-r~V~~S 130 (485)
++|+||-+||. ..........++.|+.-.+.+.+.+.+.... .++.+|
T Consensus 87 ~aDiVvi~aG~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~vlvvt 136 (331)
T 4aj2_A 87 NSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPQCKLLIVS 136 (331)
T ss_dssp TEEEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred CCCEEEEccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 99999999993 3344456678999999999999999988743 455444
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=96.55 E-value=0.002 Score=62.59 Aligned_cols=75 Identities=15% Similarity=0.106 Sum_probs=49.8
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCC-H---HHHHHH
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRH-K---AQVLQA 80 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d-~---~~l~~~ 80 (485)
..+++|||+||+|-+|..+++.+...| .+|.+++++..... ... .-+.. ...|.++ . +.+.++
T Consensus 144 ~~g~~vlV~Ga~ggiG~~~~~~~~~~G-~~V~~~~~~~~~~~-------~~~----~~g~~-~~~d~~~~~~~~~~~~~~ 210 (333)
T 1v3u_A 144 KGGETVLVSAAAGAVGSVVGQIAKLKG-CKVVGAAGSDEKIA-------YLK----QIGFD-AAFNYKTVNSLEEALKKA 210 (333)
T ss_dssp CSSCEEEEESTTBHHHHHHHHHHHHTT-CEEEEEESSHHHHH-------HHH----HTTCS-EEEETTSCSCHHHHHHHH
T ss_pred CCCCEEEEecCCCcHHHHHHHHHHHCC-CEEEEEeCCHHHHH-------HHH----hcCCc-EEEecCCHHHHHHHHHHH
Confidence 356899999999999999999999999 58998887643110 011 11222 2346655 2 223333
Q ss_pred hc-CCCEEEEcCC
Q 047227 81 LQ-GAEVVFHMAA 92 (485)
Q Consensus 81 ~~-~~d~Vih~aa 92 (485)
.. ++|+||++++
T Consensus 211 ~~~~~d~vi~~~g 223 (333)
T 1v3u_A 211 SPDGYDCYFDNVG 223 (333)
T ss_dssp CTTCEEEEEESSC
T ss_pred hCCCCeEEEECCC
Confidence 32 5999999997
|
| >1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A* | Back alignment and structure |
|---|
Probab=96.52 E-value=0.012 Score=56.54 Aligned_cols=112 Identities=14% Similarity=0.170 Sum_probs=71.4
Q ss_pred CCCCCCCCEEEEEcCCCchHHHHHHHHHhcCC-ceEEEeecCCccccCCccchhhhhhhhc--CCCeEEEEecCCCHHHH
Q 047227 1 MSGEENERLCVVTGGRGFAARHLVEMLIRYDM-FSVRIADLSDSIALEPHEEQGILGEALR--SGRAHYVSFDLRHKAQV 77 (485)
Q Consensus 1 M~~~~~~~~iLVtGgtG~iG~~l~~~Ll~~G~-~~V~~~~r~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~Dl~d~~~l 77 (485)
|+. .+++||.|+|+ |.+|..++..|...|. .+|.++|+....... .... +.+... ...++... | +
T Consensus 1 m~~-~~~~kI~IIGa-G~vG~sla~~l~~~~~~~ev~l~Di~~~~~~~--~~~d-l~~~~~~~~~~~~i~~-~--~---- 68 (316)
T 1ldn_A 1 MKN-NGGARVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESKAIG--DAMD-FNHGKVFAPKPVDIWH-G--D---- 68 (316)
T ss_dssp CTT-TTSCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHH--HHHH-HHHHTTSSSSCCEEEE-C--C----
T ss_pred CCC-CCCCEEEEECc-CHHHHHHHHHHHhCCCCCEEEEEeCCcchHHH--HHhh-HHHHhhhcCCCeEEEc-C--c----
Confidence 543 34579999997 9999999999988763 379999986431110 0011 111111 11344432 2 2
Q ss_pred HHHhcCCCEEEEcCCCCC-CCCchhhhHHHHHHHHHHHHHHHHhcCCC
Q 047227 78 LQALQGAEVVFHMAAPNS-SINNHKLHHSVNVEGTKNVIDACAELKVK 124 (485)
Q Consensus 78 ~~~~~~~d~Vih~aa~~~-~~~~~~~~~~~nv~~t~~ll~a~~~~~v~ 124 (485)
.++++++|+||-+++... ...........|..-.+.+.+.+.+....
T Consensus 69 ~~al~~aDvViia~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~ 116 (316)
T 1ldn_A 69 YDDCRDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQ 116 (316)
T ss_dssp GGGTTTCSEEEECCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHhCCCCEEEEcCCCCCCCCCCHHHHHHcChHHHHHHHHHHHHHCCC
Confidence 245889999999998432 22233456788888889999998887644
|
| >3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A | Back alignment and structure |
|---|
Probab=96.52 E-value=0.015 Score=56.19 Aligned_cols=104 Identities=16% Similarity=0.148 Sum_probs=58.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCC-CeEEEEecCCCHHHHHHHhcCCC
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSG-RAHYVSFDLRHKAQVLQALQGAE 85 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~Dl~d~~~l~~~~~~~d 85 (485)
|++|.|+|+||++|..+++.|.++...++..+.+.++.......-.. .-..+... ...+... .|.+ ++++++|
T Consensus 4 M~kv~IvGatG~vG~~l~~~L~~~p~~el~~l~s~~~~~saGk~~~~-~~p~~~~~~~~~v~~~--~~~~---~~~~~~D 77 (337)
T 3dr3_A 4 MLNTLIVGASGYAGAELVTYVNRHPHMNITALTVSAQSNDAGKLISD-LHPQLKGIVELPLQPM--SDIS---EFSPGVD 77 (337)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTSBHHH-HCGGGTTTCCCBEEEE--SSGG---GTCTTCS
T ss_pred ceEEEEECCCChHHHHHHHHHHhCCCCcEEEEEecCchhhcCCchHH-hCccccCccceeEecc--CCHH---HHhcCCC
Confidence 57999999999999999999998765677766543310000000000 00001111 2222222 0221 2237899
Q ss_pred EEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCc
Q 047227 86 VVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSP 132 (485)
Q Consensus 86 ~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~ 132 (485)
+||-+.+. ..++.....+.+.|+ ++|=.|+.
T Consensus 78 vvf~a~p~---------------~~s~~~~~~~~~~g~-~vIDlSa~ 108 (337)
T 3dr3_A 78 VVFLATAH---------------EVSHDLAPQFLEAGC-VVFDLSGA 108 (337)
T ss_dssp EEEECSCH---------------HHHHHHHHHHHHTTC-EEEECSST
T ss_pred EEEECCCh---------------HHHHHHHHHHHHCCC-EEEEcCCc
Confidence 99977651 123456666667786 67878875
|
| >7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A* | Back alignment and structure |
|---|
Probab=96.44 E-value=0.018 Score=56.43 Aligned_cols=119 Identities=15% Similarity=0.148 Sum_probs=73.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCc-e---EEEeecCCccccCCccchhhhhhhhcC--CCeEEEEecCCCHHHHHHH
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMF-S---VRIADLSDSIALEPHEEQGILGEALRS--GRAHYVSFDLRHKAQVLQA 80 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~-~---V~~~~r~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~Dl~d~~~l~~~ 80 (485)
.+||.|+||+|.||++++..|...+.. + +.+.+.......+..+ +...+.... +-...+.. .+ ...+.
T Consensus 32 ~~KV~ViGAaG~VG~~la~~l~~~~l~~e~~~l~L~d~d~~~~~~~~~--G~amDL~h~~~p~~~~v~i--~~--~~y~~ 105 (375)
T 7mdh_A 32 LVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALE--GVAMELEDSLYPLLREVSI--GI--DPYEV 105 (375)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHH--HHHHHHHTTTCTTEEEEEE--ES--CHHHH
T ss_pred CCEEEEECCCChHHHHHHHHHHcCCcCCCCceeEEEecCccchhhhhH--HHHHhHHhhhhhhcCCcEE--ec--CCHHH
Confidence 479999999999999999999887643 2 6655433221100000 001111111 11111111 11 13567
Q ss_pred hcCCCEEEEcCC-CCCCCCchhhhHHHHHHHHHHHHHHHHhc-CC-CEEEEecC
Q 047227 81 LQGAEVVFHMAA-PNSSINNHKLHHSVNVEGTKNVIDACAEL-KV-KRLIYTSS 131 (485)
Q Consensus 81 ~~~~d~Vih~aa-~~~~~~~~~~~~~~nv~~t~~ll~a~~~~-~v-~r~V~~SS 131 (485)
++++|+||-.|| +...........+.|+.-.+.+.+++.+. +. ..++.+|-
T Consensus 106 ~~daDvVVitag~prkpG~tR~DLl~~N~~I~k~i~~~i~~~a~p~~ivlVvsN 159 (375)
T 7mdh_A 106 FEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGN 159 (375)
T ss_dssp TTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSS
T ss_pred hCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecC
Confidence 899999999998 43344567788999999999999999885 43 35665554
|
| >1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0083 Score=55.69 Aligned_cols=110 Identities=17% Similarity=0.178 Sum_probs=66.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCcccc--CCc----------cchhhhhhhhc--CCCeE--EEEec
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIAL--EPH----------EEQGILGEALR--SGRAH--YVSFD 70 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~--~~~----------~~~~~~~~~~~--~~~v~--~~~~D 70 (485)
+++|+|.|+ |-+|+++++.|...|.-+++++|...-... .++ .+.......+. .+.++ .+..+
T Consensus 28 ~~~VlvvG~-GglG~~va~~La~~Gvg~i~lvD~d~v~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~~~~ 106 (251)
T 1zud_1 28 DSQVLIIGL-GGLGTPAALYLAGAGVGTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVSQQRLTQLNPDIQLTALQQR 106 (251)
T ss_dssp TCEEEEECC-STTHHHHHHHHHHTTCSEEEEECCCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEECSC
T ss_pred cCcEEEEcc-CHHHHHHHHHHHHcCCCeEEEEeCCCcccccCCCCccCChhhCCCHHHHHHHHHHHHHCCCCEEEEEecc
Confidence 479999995 569999999999999668999987642111 111 00000111111 23443 44334
Q ss_pred CCCHHHHHHHhcCCCEEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCcc
Q 047227 71 LRHKAQVLQALQGAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPS 133 (485)
Q Consensus 71 l~d~~~l~~~~~~~d~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~ 133 (485)
+ +.+.+.++++++|+||.+.. +. ..-..+-++|++.++ .+|+.+...
T Consensus 107 ~-~~~~~~~~~~~~DvVi~~~d------~~--------~~r~~l~~~~~~~~~-p~i~~~~~g 153 (251)
T 1zud_1 107 L-TGEALKDAVARADVVLDCTD------NM--------ATRQEINAACVALNT-PLITASAVG 153 (251)
T ss_dssp C-CHHHHHHHHHHCSEEEECCS------SH--------HHHHHHHHHHHHTTC-CEEEEEEEB
T ss_pred C-CHHHHHHHHhcCCEEEECCC------CH--------HHHHHHHHHHHHhCC-CEEEEeccc
Confidence 4 34567788889999998753 11 122356777888775 477766543
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0041 Score=63.23 Aligned_cols=73 Identities=19% Similarity=0.189 Sum_probs=57.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHH-hcCCC
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQA-LQGAE 85 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~-~~~~d 85 (485)
.|+|+|.| .|-+|+++++.|.+.| +.|+++++.+.. +......-++..+.||-++++.+.++ ++++|
T Consensus 3 ~M~iiI~G-~G~vG~~la~~L~~~~-~~v~vId~d~~~----------~~~~~~~~~~~~i~Gd~~~~~~L~~Agi~~ad 70 (461)
T 4g65_A 3 AMKIIILG-AGQVGGTLAENLVGEN-NDITIVDKDGDR----------LRELQDKYDLRVVNGHASHPDVLHEAGAQDAD 70 (461)
T ss_dssp CEEEEEEC-CSHHHHHHHHHTCSTT-EEEEEEESCHHH----------HHHHHHHSSCEEEESCTTCHHHHHHHTTTTCS
T ss_pred cCEEEEEC-CCHHHHHHHHHHHHCC-CCEEEEECCHHH----------HHHHHHhcCcEEEEEcCCCHHHHHhcCCCcCC
Confidence 48999998 6999999999999999 599999887542 22222233688999999999999888 57899
Q ss_pred EEEEcC
Q 047227 86 VVFHMA 91 (485)
Q Consensus 86 ~Vih~a 91 (485)
.++-+.
T Consensus 71 ~~ia~t 76 (461)
T 4g65_A 71 MLVAVT 76 (461)
T ss_dssp EEEECC
T ss_pred EEEEEc
Confidence 988543
|
| >2r00_A Aspartate-semialdehyde dehydrogenase; conformational change, half-OF-sites-reactivity, protein evolution, sequence homology; HET: HTI; 2.03A {Vibrio cholerae} PDB: 2qz9_A* 2r00_C* | Back alignment and structure |
|---|
Probab=96.41 E-value=0.011 Score=57.42 Aligned_cols=94 Identities=13% Similarity=0.103 Sum_probs=57.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcC--CceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCC
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYD--MFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGA 84 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G--~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 84 (485)
+++|.|.|+||++|+.+++.|.+++ ..+++.+...++. . +. +. +....+.+ .|+ |+ +.++++
T Consensus 3 ~~kV~I~GAtG~iG~~llr~L~~~~~p~~elv~i~s~~~~--G--~~---~~--~~~~~i~~--~~~-~~----~~~~~v 66 (336)
T 2r00_A 3 QFNVAIFGATGAVGETMLEVLQEREFPVDELFLLASERSE--G--KT---YR--FNGKTVRV--QNV-EE----FDWSQV 66 (336)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEECTTTT--T--CE---EE--ETTEEEEE--EEG-GG----CCGGGC
T ss_pred ccEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEEECCCCC--C--Cc---ee--ecCceeEE--ecC-Ch----HHhcCC
Confidence 5899999999999999999999883 2456655432210 0 00 00 11112222 232 11 134689
Q ss_pred CEEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCc
Q 047227 85 EVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSP 132 (485)
Q Consensus 85 d~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~ 132 (485)
|+||-+.+. ..+......+.+.|+ ++|-.|+.
T Consensus 67 DvVf~a~g~---------------~~s~~~a~~~~~~G~-~vId~s~~ 98 (336)
T 2r00_A 67 HIALFSAGG---------------ELSAKWAPIAAEAGV-VVIDNTSH 98 (336)
T ss_dssp SEEEECSCH---------------HHHHHHHHHHHHTTC-EEEECSST
T ss_pred CEEEECCCc---------------hHHHHHHHHHHHcCC-EEEEcCCc
Confidence 999987751 123456677778887 67888875
|
| >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0022 Score=62.07 Aligned_cols=75 Identities=8% Similarity=-0.027 Sum_probs=50.2
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHH---HHHHHh
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKA---QVLQAL 81 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~---~l~~~~ 81 (485)
..+++|||+||+|-+|..+++.+...| .+|.++++++... ..... + +... ..|..+.+ .+.+..
T Consensus 139 ~~g~~vlV~Ga~ggiG~~~~~~a~~~G-~~V~~~~~~~~~~-------~~~~~-~---g~~~-~~~~~~~~~~~~~~~~~ 205 (327)
T 1qor_A 139 KPDEQFLFHAAAGGVGLIACQWAKALG-AKLIGTVGTAQKA-------QSALK-A---GAWQ-VINYREEDLVERLKEIT 205 (327)
T ss_dssp CTTCEEEESSTTBHHHHHHHHHHHHHT-CEEEEEESSHHHH-------HHHHH-H---TCSE-EEETTTSCHHHHHHHHT
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHcC-CEEEEEeCCHHHH-------HHHHH-c---CCCE-EEECCCccHHHHHHHHh
Confidence 356899999999999999999999999 5899988764311 01111 1 2222 23555533 344443
Q ss_pred c--CCCEEEEcCC
Q 047227 82 Q--GAEVVFHMAA 92 (485)
Q Consensus 82 ~--~~d~Vih~aa 92 (485)
. ++|+||++++
T Consensus 206 ~~~~~D~vi~~~g 218 (327)
T 1qor_A 206 GGKKVRVVYDSVG 218 (327)
T ss_dssp TTCCEEEEEECSC
T ss_pred CCCCceEEEECCc
Confidence 2 5999999997
|
| >1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0038 Score=61.12 Aligned_cols=75 Identities=16% Similarity=0.216 Sum_probs=50.5
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHH---HHHHHh
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKA---QVLQAL 81 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~---~l~~~~ 81 (485)
..+++|||+|++|-+|..+++.+...| .+|.++++++.... ... .-+... ..|..+.+ .+.+..
T Consensus 169 ~~g~~vlV~GasggiG~~~~~~a~~~G-a~Vi~~~~~~~~~~-------~~~----~~ga~~-~~d~~~~~~~~~~~~~~ 235 (351)
T 1yb5_A 169 KAGESVLVHGASGGVGLAACQIARAYG-LKILGTAGTEEGQK-------IVL----QNGAHE-VFNHREVNYIDKIKKYV 235 (351)
T ss_dssp CTTCEEEEETCSSHHHHHHHHHHHHTT-CEEEEEESSHHHHH-------HHH----HTTCSE-EEETTSTTHHHHHHHHH
T ss_pred CCcCEEEEECCCChHHHHHHHHHHHCC-CEEEEEeCChhHHH-------HHH----HcCCCE-EEeCCCchHHHHHHHHc
Confidence 356899999999999999999999999 58998887643110 111 112222 24555533 344444
Q ss_pred c--CCCEEEEcCC
Q 047227 82 Q--GAEVVFHMAA 92 (485)
Q Consensus 82 ~--~~d~Vih~aa 92 (485)
. ++|+||++++
T Consensus 236 ~~~~~D~vi~~~G 248 (351)
T 1yb5_A 236 GEKGIDIIIEMLA 248 (351)
T ss_dssp CTTCEEEEEESCH
T ss_pred CCCCcEEEEECCC
Confidence 3 5999999987
|
| >3pwk_A Aspartate-semialdehyde dehydrogenase; NADP binding, oxidoreductase-oxidoreductase I complex; HET: 25A L14; 1.50A {Streptococcus pneumoniae} PDB: 2gyy_A* 2gz2_A* 2gz3_A* 2gz1_A* 3pws_A* 3pyl_A 3pyx_A* 3pzb_A* 3q11_A* 3q1l_A | Back alignment and structure |
|---|
Probab=96.36 E-value=0.022 Score=55.75 Aligned_cols=94 Identities=13% Similarity=0.157 Sum_probs=55.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCc--eEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCC
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMF--SVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGA 84 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 84 (485)
+++|.|.|+||++|..+++.|.++++. ++..+...++. ..... + .+.+...-++.. +.++++
T Consensus 2 ~~kVaIvGATG~vG~eLlrlL~~~~~p~~el~~~as~~sa--G~~~~-------~--~~~~~~~~~~~~-----~~~~~~ 65 (366)
T 3pwk_A 2 GYTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSA--GKSLK-------F--KDQDITIEETTE-----TAFEGV 65 (366)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHTCCCCEEEEEEEECTTTT--TCEEE-------E--TTEEEEEEECCT-----TTTTTC
T ss_pred CcEEEEECCCChHHHHHHHHHhcCCCCcEEEEEEEccccC--CCcce-------e--cCCCceEeeCCH-----HHhcCC
Confidence 379999999999999999999887643 34444332221 00000 1 111222223221 125789
Q ss_pred CEEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCc
Q 047227 85 EVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSP 132 (485)
Q Consensus 85 d~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~ 132 (485)
|+||-+.+. ..++.....+.+.|+ ++|=.|+.
T Consensus 66 Dvvf~a~~~---------------~~s~~~a~~~~~~G~-~vIDlSa~ 97 (366)
T 3pwk_A 66 DIALFSAGS---------------STSAKYAPYAVKAGV-VVVDNTSY 97 (366)
T ss_dssp SEEEECSCH---------------HHHHHHHHHHHHTTC-EEEECSST
T ss_pred CEEEECCCh---------------HhHHHHHHHHHHCCC-EEEEcCCc
Confidence 999988751 123456666667787 67777764
|
| >1p9o_A Phosphopantothenoylcysteine synthetase; ligase; 2.30A {Homo sapiens} SCOP: c.72.3.1 | Back alignment and structure |
|---|
Probab=96.32 E-value=0.0074 Score=57.54 Aligned_cols=37 Identities=24% Similarity=0.299 Sum_probs=30.6
Q ss_pred CCCE-EEEE-cCC-----------------CchHHHHHHHHHhcCCceEEEeecCCc
Q 047227 6 NERL-CVVT-GGR-----------------GFAARHLVEMLIRYDMFSVRIADLSDS 43 (485)
Q Consensus 6 ~~~~-iLVt-Ggt-----------------G~iG~~l~~~Ll~~G~~~V~~~~r~~~ 43 (485)
.+++ |||| ||| |..|.+++++++++| +.|+++.+..+
T Consensus 35 ~gk~~VLITaGgT~EpID~DpVRfItN~SSGkmG~aiAe~~~~~G-a~V~lv~g~~s 90 (313)
T 1p9o_A 35 QGRRVVLVTSGGTKVPLEARPVRFLDNFSSGRRGATSAEAFLAAG-YGVLFLYRARS 90 (313)
T ss_dssp TTCCEEEEEESBCEEESSSSCSEEEEECCCCHHHHHHHHHHHHTT-CEEEEEEETTS
T ss_pred cCCeEEEEeCCCcccccCCCceeEecCCCCcHHHHHHHHHHHHCC-CEEEEEecCCC
Confidence 3566 9998 566 999999999999999 69999887543
|
| >1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=96.30 E-value=0.013 Score=56.47 Aligned_cols=113 Identities=10% Similarity=0.089 Sum_probs=69.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCc-eEEEeecCCccccCCccchhhhhhhh-cCCCeEEEEecCCCHHHHHHHhcCC
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMF-SVRIADLSDSIALEPHEEQGILGEAL-RSGRAHYVSFDLRHKAQVLQALQGA 84 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~-~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~~~ 84 (485)
.|||.|+|+ |.+|..++..|+..+.. ++.++|........ .... +.+.. ...+++.. +| + .++++++
T Consensus 5 ~~KI~IiGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g--~~~d-l~~~~~~~~~~~v~-~~--~----~~a~~~a 73 (318)
T 1ez4_A 5 HQKVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKG--DALD-LEDAQAFTAPKKIY-SG--E----YSDCKDA 73 (318)
T ss_dssp BCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHH--HHHH-HHGGGGGSCCCEEE-EC--C----GGGGTTC
T ss_pred CCEEEEECC-CHHHHHHHHHHHcCCCCCEEEEEeCCchHHHH--HHHH-HHHHHHhcCCeEEE-EC--C----HHHhCCC
Confidence 379999997 99999999999988742 79999885432110 0000 11110 11334443 23 2 3458999
Q ss_pred CEEEEcCCCCC-CCCchhhhHHHHHHHHHHHHHHHHhcCCC-EEEEec
Q 047227 85 EVVFHMAAPNS-SINNHKLHHSVNVEGTKNVIDACAELKVK-RLIYTS 130 (485)
Q Consensus 85 d~Vih~aa~~~-~~~~~~~~~~~nv~~t~~ll~a~~~~~v~-r~V~~S 130 (485)
|+||..++... .......+...|+...+.+.+.+.+.+.. .++.+|
T Consensus 74 DvVii~ag~~~~~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~t 121 (318)
T 1ez4_A 74 DLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAA 121 (318)
T ss_dssp SEEEECCCC----------CHHHHHHHHHHHHHHHHHTTCCSEEEECS
T ss_pred CEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeC
Confidence 99999999432 22233456789999999999999998743 444443
|
| >1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} | Back alignment and structure |
|---|
Probab=96.27 E-value=0.0032 Score=61.11 Aligned_cols=75 Identities=13% Similarity=0.138 Sum_probs=50.5
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCH---HHHHHHh
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHK---AQVLQAL 81 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~---~~l~~~~ 81 (485)
..+++|||+||+|-+|..+++.+...| .+|.++++..... ..... + +... ..|..+. +.+.+..
T Consensus 144 ~~g~~vlV~Ga~ggiG~~~~~~a~~~G-~~Vi~~~~~~~~~-------~~~~~-~---g~~~-~~d~~~~~~~~~i~~~~ 210 (333)
T 1wly_A 144 KPGDYVLIHAAAGGMGHIMVPWARHLG-ATVIGTVSTEEKA-------ETARK-L---GCHH-TINYSTQDFAEVVREIT 210 (333)
T ss_dssp CTTCEEEETTTTSTTHHHHHHHHHHTT-CEEEEEESSHHHH-------HHHHH-H---TCSE-EEETTTSCHHHHHHHHH
T ss_pred CCCCEEEEECCccHHHHHHHHHHHHCC-CEEEEEeCCHHHH-------HHHHH-c---CCCE-EEECCCHHHHHHHHHHh
Confidence 356899999999999999999999999 5899988764311 01111 1 2222 2355543 3344444
Q ss_pred c--CCCEEEEcCC
Q 047227 82 Q--GAEVVFHMAA 92 (485)
Q Consensus 82 ~--~~d~Vih~aa 92 (485)
. ++|+||++++
T Consensus 211 ~~~~~d~vi~~~g 223 (333)
T 1wly_A 211 GGKGVDVVYDSIG 223 (333)
T ss_dssp TTCCEEEEEECSC
T ss_pred CCCCCeEEEECCc
Confidence 2 5999999998
|
| >1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* | Back alignment and structure |
|---|
Probab=96.26 E-value=0.031 Score=53.82 Aligned_cols=113 Identities=12% Similarity=0.097 Sum_probs=70.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhh--cCCCeEEEE-ecCCCHHHHHHHhcC
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEAL--RSGRAHYVS-FDLRHKAQVLQALQG 83 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~--~~~~v~~~~-~Dl~d~~~l~~~~~~ 83 (485)
+|||.|+|+ |.+|..++..|...|+..|.++|+........... +.+.. .....+... .| + +++++
T Consensus 4 ~~kI~VIGa-G~vG~~ia~~la~~g~~~v~L~Di~~~~l~~~~~~---l~~~~~~~~~~~~i~~t~d------~-~al~~ 72 (322)
T 1t2d_A 4 KAKIVLVGS-GMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALD---TSHTNVMAYSNCKVSGSNT------Y-DDLAG 72 (322)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHH---HHTHHHHHTCCCCEEEECC------G-GGGTT
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHH---HHhhhhhcCCCcEEEECCC------H-HHhCC
Confidence 479999997 99999999999999964699998865422100000 11110 011222222 23 3 46889
Q ss_pred CCEEEEcCCCCCCCC-c-----hhhhHHHHHHHHHHHHHHHHhcCCC-EEEEec
Q 047227 84 AEVVFHMAAPNSSIN-N-----HKLHHSVNVEGTKNVIDACAELKVK-RLIYTS 130 (485)
Q Consensus 84 ~d~Vih~aa~~~~~~-~-----~~~~~~~nv~~t~~ll~a~~~~~v~-r~V~~S 130 (485)
+|+||-.++...... . .......|+.-.+.+.+.+.+.... .++.+|
T Consensus 73 aD~Vi~a~g~p~k~g~~~qe~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~t 126 (322)
T 1t2d_A 73 ADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVT 126 (322)
T ss_dssp CSEEEECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECS
T ss_pred CCEEEEeCCCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 999999998332211 1 3456777888888888888877643 344443
|
| >2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A* | Back alignment and structure |
|---|
Probab=96.25 E-value=0.0071 Score=54.71 Aligned_cols=66 Identities=21% Similarity=0.216 Sum_probs=46.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCCC
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGAE 85 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~d 85 (485)
++|+|.|+| +|.+|+.+++.|.+.| ++|++.+|..... ..+...++... + +.++++++|
T Consensus 27 ~~~~I~iiG-~G~~G~~la~~l~~~g-~~V~~~~r~~~~~-----------~~~~~~g~~~~-----~---~~~~~~~~D 85 (215)
T 2vns_A 27 EAPKVGILG-SGDFARSLATRLVGSG-FKVVVGSRNPKRT-----------ARLFPSAAQVT-----F---QEEAVSSPE 85 (215)
T ss_dssp --CCEEEEC-CSHHHHHHHHHHHHTT-CCEEEEESSHHHH-----------HHHSBTTSEEE-----E---HHHHTTSCS
T ss_pred CCCEEEEEc-cCHHHHHHHHHHHHCC-CEEEEEeCCHHHH-----------HHHHHcCCcee-----c---HHHHHhCCC
Confidence 457999998 9999999999999999 4899998864311 11112244432 2 456678899
Q ss_pred EEEEcCC
Q 047227 86 VVFHMAA 92 (485)
Q Consensus 86 ~Vih~aa 92 (485)
+||.+..
T Consensus 86 vVi~av~ 92 (215)
T 2vns_A 86 VIFVAVF 92 (215)
T ss_dssp EEEECSC
T ss_pred EEEECCC
Confidence 9998775
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=96.24 E-value=0.0032 Score=61.46 Aligned_cols=76 Identities=11% Similarity=0.095 Sum_probs=49.7
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCH----HHHHHH
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHK----AQVLQA 80 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~----~~l~~~ 80 (485)
..+++|||+|++|-+|..+++.+...| .+|++++++... +......-+... ..|..+. +.+.++
T Consensus 154 ~~g~~vlI~Ga~g~iG~~~~~~a~~~G-~~V~~~~~~~~~----------~~~~~~~~g~~~-~~d~~~~~~~~~~~~~~ 221 (345)
T 2j3h_A 154 KEGETVYVSAASGAVGQLVGQLAKMMG-CYVVGSAGSKEK----------VDLLKTKFGFDD-AFNYKEESDLTAALKRC 221 (345)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHTT-CEEEEEESSHHH----------HHHHHHTSCCSE-EEETTSCSCSHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCCHHH----------HHHHHHHcCCce-EEecCCHHHHHHHHHHH
Confidence 356899999999999999999999999 589988876431 111110112222 2355442 334333
Q ss_pred h-cCCCEEEEcCC
Q 047227 81 L-QGAEVVFHMAA 92 (485)
Q Consensus 81 ~-~~~d~Vih~aa 92 (485)
. .++|+||++++
T Consensus 222 ~~~~~d~vi~~~g 234 (345)
T 2j3h_A 222 FPNGIDIYFENVG 234 (345)
T ss_dssp CTTCEEEEEESSC
T ss_pred hCCCCcEEEECCC
Confidence 3 25999999987
|
| >2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=96.24 E-value=0.015 Score=56.11 Aligned_cols=114 Identities=11% Similarity=0.130 Sum_probs=72.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCc-eEEEeecCCccccCCccchhhhhhhh-cCCCeEEEEecCCCHHHHHHHhcC
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMF-SVRIADLSDSIALEPHEEQGILGEAL-RSGRAHYVSFDLRHKAQVLQALQG 83 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~-~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~~ 83 (485)
+.|||.|+|+ |.+|..++..|+..+.. ++.++|......... ... +.+.. ...+++.. +| + .+++++
T Consensus 8 ~~~KI~IiGa-G~vG~~la~~l~~~~~~~el~L~Di~~~~~~g~--~~d-l~~~~~~~~~~~i~-~~--~----~~a~~~ 76 (326)
T 2zqz_A 8 DHQKVILVGD-GAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGD--AID-LSNALPFTSPKKIY-SA--E----YSDAKD 76 (326)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHH--HHH-HHTTGGGSCCCEEE-EC--C----GGGGGG
T ss_pred CCCEEEEECC-CHHHHHHHHHHHcCCCCCEEEEEeCCchHhHHH--HHH-HHHHHHhcCCeEEE-EC--C----HHHhCC
Confidence 4579999997 99999999999887742 799998854321100 000 11110 11334443 22 2 345889
Q ss_pred CCEEEEcCCCCC-CCCchhhhHHHHHHHHHHHHHHHHhcCCC-EEEEec
Q 047227 84 AEVVFHMAAPNS-SINNHKLHHSVNVEGTKNVIDACAELKVK-RLIYTS 130 (485)
Q Consensus 84 ~d~Vih~aa~~~-~~~~~~~~~~~nv~~t~~ll~a~~~~~v~-r~V~~S 130 (485)
+|+||..++... .......+...|+.-.+.+.+.+.+.... .++.+|
T Consensus 77 aDvVii~ag~~~k~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~t 125 (326)
T 2zqz_A 77 ADLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAA 125 (326)
T ss_dssp CSEEEECCCCC-----CHHHHHHHHHHHHHHHHHHHHHHTCCSEEEECS
T ss_pred CCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 999999999432 22344567789999999999999888743 455443
|
| >3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A* | Back alignment and structure |
|---|
Probab=96.15 E-value=0.018 Score=54.44 Aligned_cols=110 Identities=15% Similarity=0.173 Sum_probs=67.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCcc-----------chhhhhhhhc--CC--CeEEEEec
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHE-----------EQGILGEALR--SG--RAHYVSFD 70 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~-----------~~~~~~~~~~--~~--~v~~~~~D 70 (485)
...+|+|.| .|-+|++++++|...|--+++++|.+.-...+... +.......+. .+ +++.+..+
T Consensus 35 ~~~~VlVvG-aGGlGs~va~~La~aGVG~i~lvD~D~Ve~sNL~Rq~~~~~diG~~Ka~aa~~~L~~iNP~v~v~~~~~~ 113 (292)
T 3h8v_A 35 RTFAVAIVG-VGGVGSVTAEMLTRCGIGKLLLFDYDKVELANMNRLFFQPHQAGLSKVQAAEHTLRNINPDVLFEVHNYN 113 (292)
T ss_dssp GGCEEEEEC-CSHHHHHHHHHHHHHTCSEEEEECCCBC------------CCTTSBHHHHHHHHHHHHCTTSEEEEECCC
T ss_pred hCCeEEEEC-cCHHHHHHHHHHHHcCCCEEEEECCCccChhhcccccCChhhcCchHHHHHHHHHHhhCCCcEEEEeccc
Confidence 346999998 78899999999999996689999876421111110 0000111111 23 45556667
Q ss_pred CCCHHHHHHHh-----------cCCCEEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecC
Q 047227 71 LRHKAQVLQAL-----------QGAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSS 131 (485)
Q Consensus 71 l~d~~~l~~~~-----------~~~d~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS 131 (485)
+.+.+.+.+.+ +++|+||.+.. +. ..-..+-++|.+.++ .+|+.+.
T Consensus 114 l~~~~~~~~~~~~~~~~~l~~~~~~DlVid~~D------n~--------~~R~~in~~c~~~~~-Pli~~gv 170 (292)
T 3h8v_A 114 ITTVENFQHFMDRISNGGLEEGKPVDLVLSCVD------NF--------EARMTINTACNELGQ-TWMESGV 170 (292)
T ss_dssp TTSHHHHHHHHHHHHHBSSSTTBCCSEEEECCS------SH--------HHHHHHHHHHHHHTC-CEEEEEE
T ss_pred CCcHHHHHHHhhhhcccccccCCCCCEEEECCc------ch--------hhhhHHHHHHHHhCC-CEEEeee
Confidence 77766666654 57999997753 22 222356778888886 4666543
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=96.15 E-value=0.006 Score=59.24 Aligned_cols=101 Identities=14% Similarity=0.080 Sum_probs=62.0
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHH---HHHHHh
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKA---QVLQAL 81 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~---~l~~~~ 81 (485)
..+++|||+|++|-+|...++.+...| .+|.++++++... ......-++.. ..|..+.+ .+.++.
T Consensus 148 ~~g~~vlI~Ga~g~iG~~~~~~a~~~G-a~Vi~~~~~~~~~----------~~~~~~~g~~~-~~~~~~~~~~~~~~~~~ 215 (336)
T 4b7c_A 148 KNGETVVISGAAGAVGSVAGQIARLKG-CRVVGIAGGAEKC----------RFLVEELGFDG-AIDYKNEDLAAGLKREC 215 (336)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHTT-CEEEEEESSHHHH----------HHHHHTTCCSE-EEETTTSCHHHHHHHHC
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEeCCHHHH----------HHHHHHcCCCE-EEECCCHHHHHHHHHhc
Confidence 457899999999999999999999999 5999988764311 11101223322 23544432 333333
Q ss_pred -cCCCEEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCccc
Q 047227 82 -QGAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSV 134 (485)
Q Consensus 82 -~~~d~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~v 134 (485)
.++|+||++++. ......++.++..| ++|.++...-
T Consensus 216 ~~~~d~vi~~~g~---------------~~~~~~~~~l~~~G--~iv~~G~~~~ 252 (336)
T 4b7c_A 216 PKGIDVFFDNVGG---------------EILDTVLTRIAFKA--RIVLCGAISQ 252 (336)
T ss_dssp TTCEEEEEESSCH---------------HHHHHHHTTEEEEE--EEEECCCGGG
T ss_pred CCCceEEEECCCc---------------chHHHHHHHHhhCC--EEEEEeeccc
Confidence 259999999871 01223344444443 7888776543
|
| >2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=96.13 E-value=0.011 Score=56.66 Aligned_cols=112 Identities=18% Similarity=0.116 Sum_probs=65.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCc-eEEEeecCCccccCCccchhhhhhhh-cCCCeEEEEecCCCHHHHHHHhcCCC
Q 047227 8 RLCVVTGGRGFAARHLVEMLIRYDMF-SVRIADLSDSIALEPHEEQGILGEAL-RSGRAHYVSFDLRHKAQVLQALQGAE 85 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~~G~~-~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~~~d 85 (485)
|||.|+|+ |.+|..++..|...|+. +|.++|+....... .... +.+.. .....+.... |. ++++++|
T Consensus 1 mkI~VIGa-G~vG~~la~~la~~g~~~eV~L~D~~~~~~~~--~~~~-l~~~~~~~~~~~i~~~---~~----~a~~~aD 69 (304)
T 2v6b_A 1 MKVGVVGT-GFVGSTAAFALVLRGSCSELVLVDRDEDRAQA--EAED-IAHAAPVSHGTRVWHG---GH----SELADAQ 69 (304)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHH--HHHH-HTTSCCTTSCCEEEEE---CG----GGGTTCS
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCCHHHHHH--HHHh-hhhhhhhcCCeEEEEC---CH----HHhCCCC
Confidence 58999997 99999999999999842 79999886531110 0000 00000 0012233222 32 4578999
Q ss_pred EEEEcCCCCC-CCCchhhhHHHHHHHHHHHHHHHHhcCCC-EEEEec
Q 047227 86 VVFHMAAPNS-SINNHKLHHSVNVEGTKNVIDACAELKVK-RLIYTS 130 (485)
Q Consensus 86 ~Vih~aa~~~-~~~~~~~~~~~nv~~t~~ll~a~~~~~v~-r~V~~S 130 (485)
+||-+++... ...........|+...+.+++.+.+.... .++.+|
T Consensus 70 vVIi~~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~~~vi~~t 116 (304)
T 2v6b_A 70 VVILTAGANQKPGESRLDLLEKNADIFRELVPQITRAAPDAVLLVTS 116 (304)
T ss_dssp EEEECC------------CHHHHHHHHHHHHHHHHHHCSSSEEEECS
T ss_pred EEEEcCCCCCCCCCcHHHHHHhHHHHHHHHHHHHHHhCCCeEEEEec
Confidence 9999997322 22233456788999999999998887643 344433
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=96.10 E-value=0.0067 Score=59.65 Aligned_cols=99 Identities=18% Similarity=0.154 Sum_probs=61.8
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCH---HHHHHHh
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHK---AQVLQAL 81 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~---~~l~~~~ 81 (485)
..+++|||+||+|-+|...++.+...| .+|+++++++... ..... -++..+ .|..+. +.+.+..
T Consensus 162 ~~g~~VlV~Ga~G~iG~~~~q~a~~~G-a~Vi~~~~~~~~~-------~~~~~----~Ga~~~-~~~~~~~~~~~~~~~~ 228 (362)
T 2c0c_A 162 SEGKKVLVTAAAGGTGQFAMQLSKKAK-CHVIGTCSSDEKS-------AFLKS----LGCDRP-INYKTEPVGTVLKQEY 228 (362)
T ss_dssp CTTCEEEETTTTBTTHHHHHHHHHHTT-CEEEEEESSHHHH-------HHHHH----TTCSEE-EETTTSCHHHHHHHHC
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHhCC-CEEEEEECCHHHH-------HHHHH----cCCcEE-EecCChhHHHHHHHhc
Confidence 356799999999999999999999999 5899888764311 01111 122222 243332 2233332
Q ss_pred -cCCCEEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCcc
Q 047227 82 -QGAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPS 133 (485)
Q Consensus 82 -~~~d~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~ 133 (485)
.++|+||++++. ......+++++..| ++|.+++..
T Consensus 229 ~~g~D~vid~~g~---------------~~~~~~~~~l~~~G--~iv~~g~~~ 264 (362)
T 2c0c_A 229 PEGVDVVYESVGG---------------AMFDLAVDALATKG--RLIVIGFIS 264 (362)
T ss_dssp TTCEEEEEECSCT---------------HHHHHHHHHEEEEE--EEEECCCGG
T ss_pred CCCCCEEEECCCH---------------HHHHHHHHHHhcCC--EEEEEeCCC
Confidence 359999999872 11234556665554 788887653
|
| >2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* | Back alignment and structure |
|---|
Probab=96.10 E-value=0.0044 Score=60.76 Aligned_cols=75 Identities=9% Similarity=0.126 Sum_probs=50.4
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCH---HHHHHHh
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHK---AQVLQAL 81 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~---~~l~~~~ 81 (485)
..+++|||+||+|-+|..+++.+...| .+|.+++++..... .... + +... ..|..+. +.+.+..
T Consensus 161 ~~g~~vlV~Ga~ggiG~~~~~~a~~~G-a~Vi~~~~~~~~~~-------~~~~-~---g~~~-~~~~~~~~~~~~~~~~~ 227 (354)
T 2j8z_A 161 QAGDYVLIHAGLSGVGTAAIQLTRMAG-AIPLVTAGSQKKLQ-------MAEK-L---GAAA-GFNYKKEDFSEATLKFT 227 (354)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHH-------HHHH-H---TCSE-EEETTTSCHHHHHHHHT
T ss_pred CCCCEEEEECCccHHHHHHHHHHHHcC-CEEEEEeCCHHHHH-------HHHH-c---CCcE-EEecCChHHHHHHHHHh
Confidence 356899999999999999999999999 58999887643110 1111 1 2222 2455543 3344444
Q ss_pred c--CCCEEEEcCC
Q 047227 82 Q--GAEVVFHMAA 92 (485)
Q Consensus 82 ~--~~d~Vih~aa 92 (485)
. ++|+||++++
T Consensus 228 ~~~~~d~vi~~~G 240 (354)
T 2j8z_A 228 KGAGVNLILDCIG 240 (354)
T ss_dssp TTSCEEEEEESSC
T ss_pred cCCCceEEEECCC
Confidence 3 5999999997
|
| >3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1 | Back alignment and structure |
|---|
Probab=96.09 E-value=0.015 Score=55.94 Aligned_cols=114 Identities=15% Similarity=0.010 Sum_probs=73.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCC-ceEEEeecCCccccCCccchhhhhhhh-cCCCeEEE-EecCCCHHHHHHHhc
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDM-FSVRIADLSDSIALEPHEEQGILGEAL-RSGRAHYV-SFDLRHKAQVLQALQ 82 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~-~~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~v~~~-~~Dl~d~~~l~~~~~ 82 (485)
..+||.|+|+ |.+|+.++..|...|. .+|.++|........ .... +.+.. ........ ..|. . .++
T Consensus 20 ~~~kV~ViGa-G~vG~~~a~~la~~g~~~ev~L~Di~~~~~~g--~a~D-L~~~~~~~~~~~i~~t~d~------~-~~~ 88 (330)
T 3ldh_A 20 SYNKITVVGC-DAVGMADAISVLMKDLADEVALVDVMEDKLKG--EMMD-LEHGSLFLHTAKIVSGKDY------S-VSA 88 (330)
T ss_dssp CCCEEEEEST-THHHHHHHHHHHHHCCCSEEEEECSCHHHHHH--HHHH-HHHHGGGSCCSEEEEESSS------C-SCS
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEECCHHHHHH--HHHH-hhhhhhcccCCeEEEcCCH------H-HhC
Confidence 4589999997 9999999999999885 279999885432110 0000 11110 01122222 2342 2 278
Q ss_pred CCCEEEEcCCC-CCCCCchhhhHHHHHHHHHHHHHHHHhcCCC-EEEEec
Q 047227 83 GAEVVFHMAAP-NSSINNHKLHHSVNVEGTKNVIDACAELKVK-RLIYTS 130 (485)
Q Consensus 83 ~~d~Vih~aa~-~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~-r~V~~S 130 (485)
++|+||-.||. .....+.......|+.-.+.+.+.+.+.+.. .++.+|
T Consensus 89 daDiVIitaG~p~kpG~tR~dll~~N~~I~k~i~~~I~k~~P~a~ilvvt 138 (330)
T 3ldh_A 89 GSKLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKHSPDCLKELHP 138 (330)
T ss_dssp SCSEEEECCSCCCCSSCCTTGGGHHHHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred CCCEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCceEEeCC
Confidence 89999999994 3333455677899999999999999988743 344444
|
| >4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A | Back alignment and structure |
|---|
Probab=96.09 E-value=0.0078 Score=60.43 Aligned_cols=72 Identities=13% Similarity=0.051 Sum_probs=54.0
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc
Q 047227 3 GEENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ 82 (485)
Q Consensus 3 ~~~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~ 82 (485)
..+++++|+|+| .|.+|+.+++.+.+.| ++|.+++..+... ... . --+.+..|..|.+.+.++++
T Consensus 31 ~~~~~~~IlIlG-~G~lg~~~~~aa~~lG-~~v~v~d~~~~~p---------~~~-~---ad~~~~~~~~d~~~l~~~a~ 95 (419)
T 4e4t_A 31 PILPGAWLGMVG-GGQLGRMFCFAAQSMG-YRVAVLDPDPASP---------AGA-V---ADRHLRAAYDDEAALAELAG 95 (419)
T ss_dssp CCCTTCEEEEEC-CSHHHHHHHHHHHHTT-CEEEEECSCTTCH---------HHH-H---SSEEECCCTTCHHHHHHHHH
T ss_pred cCCCCCEEEEEC-CCHHHHHHHHHHHHCC-CEEEEECCCCcCc---------hhh-h---CCEEEECCcCCHHHHHHHHh
Confidence 345678999998 6899999999999999 5888887543210 000 0 12456689999999999999
Q ss_pred CCCEEEE
Q 047227 83 GAEVVFH 89 (485)
Q Consensus 83 ~~d~Vih 89 (485)
++|+|+.
T Consensus 96 ~~D~V~~ 102 (419)
T 4e4t_A 96 LCEAVST 102 (419)
T ss_dssp HCSEEEE
T ss_pred cCCEEEE
Confidence 9999983
|
| >2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=96.00 E-value=0.05 Score=52.53 Aligned_cols=112 Identities=14% Similarity=0.135 Sum_probs=69.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhh----cCCCeEEEEecCCCHHHHHHHhc
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEAL----RSGRAHYVSFDLRHKAQVLQALQ 82 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~----~~~~v~~~~~Dl~d~~~l~~~~~ 82 (485)
+|+|.|+|+ |.+|..++..|...|+..|.+.|+........... +.+.. ...++... .| + ++++
T Consensus 14 ~~kI~ViGa-G~vG~~iA~~la~~g~~~V~L~Di~~~~l~~~~~~---l~~~~~~~~~~~~i~~t-~d------~-~al~ 81 (328)
T 2hjr_A 14 RKKISIIGA-GQIGSTIALLLGQKDLGDVYMFDIIEGVPQGKALD---LNHCMALIGSPAKIFGE-NN------Y-EYLQ 81 (328)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSTTHHHHHHHH---HHHHHHHHTCCCCEEEE-SC------G-GGGT
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHH---HHhHhhccCCCCEEEEC-CC------H-HHHC
Confidence 369999997 99999999999999964799999875422110000 11111 11223221 23 2 4678
Q ss_pred CCCEEEEcCCCCC-CCCchhhhHHHHHHHHHHHHHHHHhcCCC-EEEEec
Q 047227 83 GAEVVFHMAAPNS-SINNHKLHHSVNVEGTKNVIDACAELKVK-RLIYTS 130 (485)
Q Consensus 83 ~~d~Vih~aa~~~-~~~~~~~~~~~nv~~t~~ll~a~~~~~v~-r~V~~S 130 (485)
++|+||-.++... ...........|+.-.+.+.+.+.+.... .++.+|
T Consensus 82 ~aD~VI~avg~p~k~g~tr~dl~~~n~~i~~~i~~~i~~~~p~a~viv~t 131 (328)
T 2hjr_A 82 NSDVVIITAGVPRKPNMTRSDLLTVNAKIVGSVAENVGKYCPNAFVICIT 131 (328)
T ss_dssp TCSEEEECCSCCCCTTCCSGGGHHHHHHHHHHHHHHHHHHCTTCEEEECC
T ss_pred CCCEEEEcCCCCCCCCCchhhHHhhhHHHHHHHHHHHHHHCCCeEEEEec
Confidence 9999999997322 22223345677888888888888876543 344343
|
| >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D | Back alignment and structure |
|---|
Probab=96.00 E-value=0.0088 Score=57.08 Aligned_cols=73 Identities=12% Similarity=0.029 Sum_probs=50.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCCC
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGAE 85 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~d 85 (485)
.+.+|||+|++|-+|...++.+...| .+|+++++++.... .... -+...+ .|..+.+++.+.++++|
T Consensus 125 ~g~~vlV~Ga~G~vG~~~~~~a~~~G-a~Vi~~~~~~~~~~-------~~~~----~ga~~~-~~~~~~~~~~~~~~~~d 191 (302)
T 1iz0_A 125 PGEKVLVQAAAGALGTAAVQVARAMG-LRVLAAASRPEKLA-------LPLA----LGAEEA-ATYAEVPERAKAWGGLD 191 (302)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHTT-CEEEEEESSGGGSH-------HHHH----TTCSEE-EEGGGHHHHHHHTTSEE
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHH-------HHHh----cCCCEE-EECCcchhHHHHhcCce
Confidence 46799999999999999999999999 58999887643110 1111 123322 45555133444558899
Q ss_pred EEEEcCC
Q 047227 86 VVFHMAA 92 (485)
Q Consensus 86 ~Vih~aa 92 (485)
+||+ ++
T Consensus 192 ~vid-~g 197 (302)
T 1iz0_A 192 LVLE-VR 197 (302)
T ss_dssp EEEE-CS
T ss_pred EEEE-CC
Confidence 9999 87
|
| >2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase; oxidoreductase, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=95.98 E-value=0.02 Score=55.87 Aligned_cols=33 Identities=15% Similarity=0.293 Sum_probs=28.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEee
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIAD 39 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~ 39 (485)
++||.|.|++|++|+.+++.|.++...+++.+.
T Consensus 4 ~~kV~IiGAtG~iG~~llr~L~~~p~~elvai~ 36 (350)
T 2ep5_A 4 KIKVSLLGSTGMVGQKMVKMLAKHPYLELVKVS 36 (350)
T ss_dssp CEEEEEESCSSHHHHHHHHHHTTCSSEEEEEEE
T ss_pred CcEEEEECcCCHHHHHHHHHHHhCCCcEEEEEe
Confidence 479999999999999999999887655776664
|
| >2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A | Back alignment and structure |
|---|
Probab=95.93 E-value=0.054 Score=52.00 Aligned_cols=116 Identities=13% Similarity=0.145 Sum_probs=68.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhh-hhcCCCeEEEEecCCCHHHHHHHhcCCC
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGE-ALRSGRAHYVSFDLRHKAQVLQALQGAE 85 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~Dl~d~~~l~~~~~~~d 85 (485)
+|+|.|+|+ |.+|..++..|...|+.+|+++|+........ ....... ............ .| + ++++++|
T Consensus 4 ~~kI~VIGa-G~~G~~ia~~la~~g~~~V~l~D~~~~~~~~~--~~~l~~~~~~~~~~~~i~~t--~d---~-~a~~~aD 74 (317)
T 2ewd_A 4 RRKIAVIGS-GQIGGNIAYIVGKDNLADVVLFDIAEGIPQGK--ALDITHSMVMFGSTSKVIGT--DD---Y-ADISGSD 74 (317)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHHTCCEEEEECSSSSHHHHH--HHHHHHHHHHHTCCCCEEEE--SC---G-GGGTTCS
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCceEEEEeCCchHHHHH--HHHHHhhhhhcCCCcEEEEC--CC---H-HHhCCCC
Confidence 379999996 99999999999999953799999875321110 0000000 000111122211 12 2 4678999
Q ss_pred EEEEcCCCC-CCCCchhhhHHHHHHHHHHHHHHHHhcCCC-EEEEecC
Q 047227 86 VVFHMAAPN-SSINNHKLHHSVNVEGTKNVIDACAELKVK-RLIYTSS 131 (485)
Q Consensus 86 ~Vih~aa~~-~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~-r~V~~SS 131 (485)
+||-+++.. .......+....|....+.+++.+.+.... .++.+|.
T Consensus 75 iVi~avg~p~~~g~~r~d~~~~~~~i~~~i~~~i~~~~~~~iii~~sN 122 (317)
T 2ewd_A 75 VVIITASIPGRPKDDRSELLFGNARILDSVAEGVKKYCPNAFVICITN 122 (317)
T ss_dssp EEEECCCCSSCCSSCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECCS
T ss_pred EEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence 999999832 222233445566777788888888776533 3444443
|
| >2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A* | Back alignment and structure |
|---|
Probab=95.92 E-value=0.007 Score=59.31 Aligned_cols=96 Identities=14% Similarity=0.048 Sum_probs=59.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCc-eEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHH---HHHHHhc-
Q 047227 8 RLCVVTGGRGFAARHLVEMLIRYDMF-SVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKA---QVLQALQ- 82 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~~G~~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~---~l~~~~~- 82 (485)
++|||+||+|-+|..+++.+...| . +|.++++.... .......-+... ..|..+.+ .+.+...
T Consensus 162 ~~vlI~GasggiG~~~~~~a~~~G-a~~Vi~~~~~~~~----------~~~~~~~~g~~~-~~d~~~~~~~~~~~~~~~~ 229 (357)
T 2zb4_A 162 KTMVVSGAAGACGSVAGQIGHFLG-CSRVVGICGTHEK----------CILLTSELGFDA-AINYKKDNVAEQLRESCPA 229 (357)
T ss_dssp CEEEESSTTBHHHHHHHHHHHHTT-CSEEEEEESCHHH----------HHHHHHTSCCSE-EEETTTSCHHHHHHHHCTT
T ss_pred cEEEEECCCcHHHHHHHHHHHHCC-CCeEEEEeCCHHH----------HHHHHHHcCCce-EEecCchHHHHHHHHhcCC
Confidence 899999999999999999999999 6 89888876431 111111112222 24655532 3333333
Q ss_pred CCCEEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCc
Q 047227 83 GAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSP 132 (485)
Q Consensus 83 ~~d~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~ 132 (485)
++|+||++++. ......++.++..| ++|.++..
T Consensus 230 ~~d~vi~~~G~---------------~~~~~~~~~l~~~G--~iv~~G~~ 262 (357)
T 2zb4_A 230 GVDVYFDNVGG---------------NISDTVISQMNENS--HIILCGQI 262 (357)
T ss_dssp CEEEEEESCCH---------------HHHHHHHHTEEEEE--EEEECCCG
T ss_pred CCCEEEECCCH---------------HHHHHHHHHhccCc--EEEEECCc
Confidence 59999999971 11223444444444 78877754
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=95.92 E-value=0.021 Score=55.51 Aligned_cols=96 Identities=10% Similarity=0.058 Sum_probs=60.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCH---HHHHHHhc
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHK---AQVLQALQ 82 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~---~~l~~~~~ 82 (485)
.+++|||+|+ |-+|..+++.+...| .+|+++++++... . ....-++..+ .|..+. +.+.++..
T Consensus 164 ~g~~VlV~Ga-G~vG~~~~~~a~~~G-a~Vi~~~~~~~~~----------~-~~~~lGa~~~-~d~~~~~~~~~~~~~~~ 229 (339)
T 1rjw_A 164 PGEWVAIYGI-GGLGHVAVQYAKAMG-LNVVAVDIGDEKL----------E-LAKELGADLV-VNPLKEDAAKFMKEKVG 229 (339)
T ss_dssp TTCEEEEECC-STTHHHHHHHHHHTT-CEEEEECSCHHHH----------H-HHHHTTCSEE-ECTTTSCHHHHHHHHHS
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcC-CEEEEEeCCHHHH----------H-HHHHCCCCEE-ecCCCccHHHHHHHHhC
Confidence 4689999999 669999999999999 5899888764311 1 1111233322 465542 23444345
Q ss_pred CCCEEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecC
Q 047227 83 GAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSS 131 (485)
Q Consensus 83 ~~d~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS 131 (485)
++|+||++++.. ......+++++..| +++.+++
T Consensus 230 ~~d~vid~~g~~--------------~~~~~~~~~l~~~G--~~v~~g~ 262 (339)
T 1rjw_A 230 GVHAAVVTAVSK--------------PAFQSAYNSIRRGG--ACVLVGL 262 (339)
T ss_dssp SEEEEEESSCCH--------------HHHHHHHHHEEEEE--EEEECCC
T ss_pred CCCEEEECCCCH--------------HHHHHHHHHhhcCC--EEEEecc
Confidence 799999998721 12234455555544 7887665
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=95.87 E-value=0.0062 Score=59.86 Aligned_cols=75 Identities=17% Similarity=0.238 Sum_probs=52.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCCC
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGAE 85 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~d 85 (485)
.+++|+|+|+ |-+|+.+++.|...|. +|++++|...+.. .+.... ...+.. +..+.+.+.+.+.++|
T Consensus 166 ~~~~VlViGa-GgvG~~aa~~a~~~Ga-~V~v~dr~~~r~~-------~~~~~~-~~~~~~---~~~~~~~~~~~~~~~D 232 (361)
T 1pjc_A 166 KPGKVVILGG-GVVGTEAAKMAVGLGA-QVQIFDINVERLS-------YLETLF-GSRVEL---LYSNSAEIETAVAEAD 232 (361)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHTTC-EEEEEESCHHHHH-------HHHHHH-GGGSEE---EECCHHHHHHHHHTCS
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCC-EEEEEeCCHHHHH-------HHHHhh-CceeEe---eeCCHHHHHHHHcCCC
Confidence 3579999998 9999999999999995 9999998754211 011111 111212 2234566778888999
Q ss_pred EEEEcCCC
Q 047227 86 VVFHMAAP 93 (485)
Q Consensus 86 ~Vih~aa~ 93 (485)
+||++++.
T Consensus 233 vVI~~~~~ 240 (361)
T 1pjc_A 233 LLIGAVLV 240 (361)
T ss_dssp EEEECCCC
T ss_pred EEEECCCc
Confidence 99999874
|
| >2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.87 E-value=0.0079 Score=58.58 Aligned_cols=98 Identities=15% Similarity=0.090 Sum_probs=62.7
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCH---HHHHHHh
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHK---AQVLQAL 81 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~---~~l~~~~ 81 (485)
..+++|||+|++|-+|..+++.+...| .+|.++++++... ..... + +... ..|..+. +.+.++.
T Consensus 165 ~~g~~vlV~Gasg~iG~~~~~~a~~~G-~~Vi~~~~~~~~~-------~~~~~-~---ga~~-~~d~~~~~~~~~~~~~~ 231 (343)
T 2eih_A 165 RPGDDVLVMAAGSGVSVAAIQIAKLFG-ARVIATAGSEDKL-------RRAKA-L---GADE-TVNYTHPDWPKEVRRLT 231 (343)
T ss_dssp CTTCEEEECSTTSTTHHHHHHHHHHTT-CEEEEEESSHHHH-------HHHHH-H---TCSE-EEETTSTTHHHHHHHHT
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEeCCHHHH-------HHHHh-c---CCCE-EEcCCcccHHHHHHHHh
Confidence 356899999999999999999999999 5899888764311 01111 1 2222 2466553 3344444
Q ss_pred c--CCCEEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCc
Q 047227 82 Q--GAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSP 132 (485)
Q Consensus 82 ~--~~d~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~ 132 (485)
. ++|+||++++ ... ....+++++..| ++|.+++.
T Consensus 232 ~~~~~d~vi~~~g-~~~--------------~~~~~~~l~~~G--~~v~~g~~ 267 (343)
T 2eih_A 232 GGKGADKVVDHTG-ALY--------------FEGVIKATANGG--RIAIAGAS 267 (343)
T ss_dssp TTTCEEEEEESSC-SSS--------------HHHHHHHEEEEE--EEEESSCC
T ss_pred CCCCceEEEECCC-HHH--------------HHHHHHhhccCC--EEEEEecC
Confidence 3 5999999997 211 124555555555 78877753
|
| >1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A* | Back alignment and structure |
|---|
Probab=95.86 E-value=0.052 Score=51.99 Aligned_cols=112 Identities=13% Similarity=0.003 Sum_probs=69.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHhc--CCceEEEeecCCccccCCccchhhhhhhh--cCCCeEEEEecCCCHHHHHHHhcC
Q 047227 8 RLCVVTGGRGFAARHLVEMLIRY--DMFSVRIADLSDSIALEPHEEQGILGEAL--RSGRAHYVSFDLRHKAQVLQALQG 83 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~~--G~~~V~~~~r~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~Dl~d~~~l~~~~~~ 83 (485)
|+|.|+|+ |.+|..++..|... | ++|.++|+........ ... +.+.. .....+.... .|. .+ +++
T Consensus 1 mkI~VIGa-G~vG~~la~~la~~~~g-~~V~l~D~~~~~~~~~--~~~-l~~~~~~~~~~~~i~~t--~d~---~~-l~~ 69 (310)
T 1guz_A 1 MKITVIGA-GNVGATTAFRLAEKQLA-RELVLLDVVEGIPQGK--ALD-MYESGPVGLFDTKVTGS--NDY---AD-TAN 69 (310)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCC-SEEEEECSSSSHHHHH--HHH-HHTTHHHHTCCCEEEEE--SCG---GG-GTT
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCC-CEEEEEeCChhHHHHH--HHh-HHhhhhcccCCcEEEEC--CCH---HH-HCC
Confidence 58999997 99999999999885 6 5899999875422100 000 01100 0112222221 232 23 788
Q ss_pred CCEEEEcCCCCC-CCCchhhhHHHHHHHHHHHHHHHHhcCCC-EEEEec
Q 047227 84 AEVVFHMAAPNS-SINNHKLHHSVNVEGTKNVIDACAELKVK-RLIYTS 130 (485)
Q Consensus 84 ~d~Vih~aa~~~-~~~~~~~~~~~nv~~t~~ll~a~~~~~v~-r~V~~S 130 (485)
+|+||-+++... ...........|+...+.+.+.+.+...+ .++.+|
T Consensus 70 aDvViiav~~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~~~~~~viv~t 118 (310)
T 1guz_A 70 SDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVS 118 (310)
T ss_dssp CSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEEECC
T ss_pred CCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEc
Confidence 999999998433 22335567788999999999988887633 444443
|
| >3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A | Back alignment and structure |
|---|
Probab=95.83 E-value=0.026 Score=55.68 Aligned_cols=70 Identities=11% Similarity=0.117 Sum_probs=53.5
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCC
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGA 84 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 84 (485)
.++++|+|+| .|.+|+.+++.+.+.| ++|.+++..+... ... ---+++.+|..|.+.+.++.+.+
T Consensus 10 ~~~~~IlIlG-~G~lg~~la~aa~~lG-~~viv~d~~~~~p---~~~----------~ad~~~~~~~~d~~~l~~~~~~~ 74 (377)
T 3orq_A 10 KFGATIGIIG-GGQLGKMMAQSAQKMG-YKVVVLDPSEDCP---CRY----------VAHEFIQAKYDDEKALNQLGQKC 74 (377)
T ss_dssp CTTCEEEEEC-CSHHHHHHHHHHHHTT-CEEEEEESCTTCT---TGG----------GSSEEEECCTTCHHHHHHHHHHC
T ss_pred CCCCEEEEEC-CCHHHHHHHHHHHHCC-CEEEEEECCCCCh---hhh----------hCCEEEECCCCCHHHHHHHHHhC
Confidence 4568999998 6889999999999999 5888888654311 000 01246779999999999999889
Q ss_pred CEEEE
Q 047227 85 EVVFH 89 (485)
Q Consensus 85 d~Vih 89 (485)
|+|..
T Consensus 75 dvi~~ 79 (377)
T 3orq_A 75 DVITY 79 (377)
T ss_dssp SEEEE
T ss_pred Cccee
Confidence 98854
|
| >1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A* | Back alignment and structure |
|---|
Probab=95.79 E-value=0.051 Score=50.00 Aligned_cols=32 Identities=19% Similarity=0.235 Sum_probs=25.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHhc-CCceEE-Eeec
Q 047227 8 RLCVVTGGRGFAARHLVEMLIRY-DMFSVR-IADL 40 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~~-G~~~V~-~~~r 40 (485)
|||.|.|++|-+|+.+++.+.+. ++ ++. ++++
T Consensus 1 mkV~V~Ga~G~mG~~i~~~~~~~~~~-elva~~d~ 34 (245)
T 1p9l_A 1 MRVGVLGAKGKVGTTMVRAVAAADDL-TLSAELDA 34 (245)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHCTTC-EEEEEECT
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCC-EEEEEEcc
Confidence 58999999999999999999876 64 555 4443
|
| >2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A | Back alignment and structure |
|---|
Probab=95.75 E-value=0.04 Score=52.74 Aligned_cols=112 Identities=15% Similarity=0.102 Sum_probs=72.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCC-ceEEEeecCCccccCCccchhhhhhhh-cCCCeEEEEecCCCHHHHHHHhcCCC
Q 047227 8 RLCVVTGGRGFAARHLVEMLIRYDM-FSVRIADLSDSIALEPHEEQGILGEAL-RSGRAHYVSFDLRHKAQVLQALQGAE 85 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~~G~-~~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~~~d 85 (485)
|||.|+|+ |.+|..++..|+..+. .++.++|........ .... +.+.. ...+++... | + .++++++|
T Consensus 1 ~KI~IiGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~k~~g--~a~d-l~~~~~~~~~~~v~~-~--~----~~a~~~aD 69 (310)
T 2xxj_A 1 MKVGIVGS-GMVGSATAYALALLGVAREVVLVDLDRKLAQA--HAED-ILHATPFAHPVWVWA-G--S----YGDLEGAR 69 (310)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHH--HHHH-HHTTGGGSCCCEEEE-C--C----GGGGTTEE
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHHHH--HHHH-HHHhHhhcCCeEEEE-C--C----HHHhCCCC
Confidence 68999997 9999999999988763 379999886432110 0000 11110 012334433 2 3 34588999
Q ss_pred EEEEcCCCCC-CCCchhhhHHHHHHHHHHHHHHHHhcCCC-EEEEec
Q 047227 86 VVFHMAAPNS-SINNHKLHHSVNVEGTKNVIDACAELKVK-RLIYTS 130 (485)
Q Consensus 86 ~Vih~aa~~~-~~~~~~~~~~~nv~~t~~ll~a~~~~~v~-r~V~~S 130 (485)
+||..++... .......+...|+.-.+.+.+.+.+.+.. .++.+|
T Consensus 70 ~Vii~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~t 116 (310)
T 2xxj_A 70 AVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVAT 116 (310)
T ss_dssp EEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred EEEECCCCCCCCCcCHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEec
Confidence 9999999432 33344567788999999999999988743 444443
|
| >4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=95.75 E-value=0.0074 Score=59.06 Aligned_cols=75 Identities=15% Similarity=0.201 Sum_probs=49.6
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCH---HHHHHHh
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHK---AQVLQAL 81 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~---~~l~~~~ 81 (485)
..+++|||+||+|-+|...++.+...| .+|+++++++.+. ..... + +...+ .|..+. +.+.++.
T Consensus 166 ~~g~~VlV~Gg~g~iG~~~~~~a~~~G-a~Vi~~~~~~~~~-------~~~~~-l---Ga~~~-~~~~~~~~~~~~~~~~ 232 (353)
T 4dup_A 166 TEGESVLIHGGTSGIGTTAIQLARAFG-AEVYATAGSTGKC-------EACER-L---GAKRG-INYRSEDFAAVIKAET 232 (353)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHTT-CEEEEEESSHHHH-------HHHHH-H---TCSEE-EETTTSCHHHHHHHHH
T ss_pred CCCCEEEEEcCCCHHHHHHHHHHHHcC-CEEEEEeCCHHHH-------HHHHh-c---CCCEE-EeCCchHHHHHHHHHh
Confidence 356899999999999999999999999 5899998765311 01111 1 22221 344432 2333333
Q ss_pred -cCCCEEEEcCC
Q 047227 82 -QGAEVVFHMAA 92 (485)
Q Consensus 82 -~~~d~Vih~aa 92 (485)
.++|+||++++
T Consensus 233 ~~g~Dvvid~~g 244 (353)
T 4dup_A 233 GQGVDIILDMIG 244 (353)
T ss_dssp SSCEEEEEESCC
T ss_pred CCCceEEEECCC
Confidence 35999999997
|
| >3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=95.74 E-value=0.024 Score=55.22 Aligned_cols=94 Identities=13% Similarity=0.193 Sum_probs=58.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCH---HHHHHHh--c
Q 047227 8 RLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHK---AQVLQAL--Q 82 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~---~~l~~~~--~ 82 (485)
+++||+||+|-+|...++.+...| .+|+++++++.+. .+... + +...+ .|..+. +.+.++. +
T Consensus 166 ~~vli~gg~g~vG~~a~qla~~~G-a~Vi~~~~~~~~~-------~~~~~-~---Ga~~~-~~~~~~~~~~~v~~~~~~~ 232 (349)
T 3pi7_A 166 KAFVMTAGASQLCKLIIGLAKEEG-FRPIVTVRRDEQI-------ALLKD-I---GAAHV-LNEKAPDFEATLREVMKAE 232 (349)
T ss_dssp SEEEESSTTSHHHHHHHHHHHHHT-CEEEEEESCGGGH-------HHHHH-H---TCSEE-EETTSTTHHHHHHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCCHHHH-------HHHHH-c---CCCEE-EECCcHHHHHHHHHHhcCC
Confidence 689999999999999999999999 5999988764421 01111 1 22222 243332 2344443 3
Q ss_pred CCCEEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecC
Q 047227 83 GAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSS 131 (485)
Q Consensus 83 ~~d~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS 131 (485)
++|+||++++.. .....+++++..| ++|.+++
T Consensus 233 g~D~vid~~g~~---------------~~~~~~~~l~~~G--~iv~~G~ 264 (349)
T 3pi7_A 233 QPRIFLDAVTGP---------------LASAIFNAMPKRA--RWIIYGR 264 (349)
T ss_dssp CCCEEEESSCHH---------------HHHHHHHHSCTTC--EEEECCC
T ss_pred CCcEEEECCCCh---------------hHHHHHhhhcCCC--EEEEEec
Confidence 699999998710 1133455555444 7887765
|
| >1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=95.73 E-value=0.032 Score=53.45 Aligned_cols=106 Identities=15% Similarity=0.075 Sum_probs=65.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCC-ceEEEeecCCccccCCccchhhhhhh--hcCCCeEEEEecCCCHHHHHHHhcCC
Q 047227 8 RLCVVTGGRGFAARHLVEMLIRYDM-FSVRIADLSDSIALEPHEEQGILGEA--LRSGRAHYVSFDLRHKAQVLQALQGA 84 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~~G~-~~V~~~~r~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~Dl~d~~~l~~~~~~~ 84 (485)
|+|.|+| +|.+|..++..|.+.|. ++|+++++........... +.+. .....+.....| . +.++++
T Consensus 2 ~kI~VIG-aG~~G~~la~~L~~~g~~~~V~l~d~~~~~~~~~~~~---l~~~~~~~~~~~~~~~~d------~-~~~~~a 70 (309)
T 1hyh_A 2 RKIGIIG-LGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQID---FQDAMANLEAHGNIVIND------W-AALADA 70 (309)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHH---HHHHGGGSSSCCEEEESC------G-GGGTTC
T ss_pred CEEEEEC-CCHHHHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHH---HHhhhhhcCCCeEEEeCC------H-HHhCCC
Confidence 7999999 89999999999999883 3899999865321110000 0101 111233333233 2 457889
Q ss_pred CEEEEcCCCCC-----CCCchhhhHHHHHHHHHHHHHHHHhcCCC
Q 047227 85 EVVFHMAAPNS-----SINNHKLHHSVNVEGTKNVIDACAELKVK 124 (485)
Q Consensus 85 d~Vih~aa~~~-----~~~~~~~~~~~nv~~t~~ll~a~~~~~v~ 124 (485)
|+||-+++... ...........|+.-.+.+++.+.+...+
T Consensus 71 DvViiav~~~~~~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~~~ 115 (309)
T 1hyh_A 71 DVVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFH 115 (309)
T ss_dssp SEEEECCSCGGGTC-------CTTHHHHHHHHHHHHHHHHHTTCC
T ss_pred CEEEEecCCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 99999887432 22233345677888888888888876543
|
| >1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A* | Back alignment and structure |
|---|
Probab=95.72 E-value=0.01 Score=59.85 Aligned_cols=34 Identities=18% Similarity=0.131 Sum_probs=30.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCc
Q 047227 8 RLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDS 43 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~ 43 (485)
|+|.|.| +|++|..++..|.+.| ++|+++++.+.
T Consensus 1 mkI~VIG-~G~vG~~~A~~la~~G-~~V~~~d~~~~ 34 (436)
T 1mv8_A 1 MRISIFG-LGYVGAVCAGCLSARG-HEVIGVDVSST 34 (436)
T ss_dssp CEEEEEC-CSTTHHHHHHHHHHTT-CEEEEECSCHH
T ss_pred CEEEEEC-CCHHHHHHHHHHHHCC-CEEEEEECCHH
Confidence 5899998 8999999999999999 58999998754
|
| >3tz6_A Aspartate-semialdehyde dehydrogenase; asadh, ASD, ASA, amino-acid biosynthesis, diaminopimelate biosynthesis, lysine biosynthesis; HET: SO4; 1.95A {Mycobacterium tuberculosis} PDB: 3vos_A* 3kub_A 3llg_A | Back alignment and structure |
|---|
Probab=95.70 E-value=0.046 Score=52.95 Aligned_cols=94 Identities=19% Similarity=0.155 Sum_probs=55.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCc--eEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCC
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMF--SVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGA 84 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 84 (485)
+++|.|.|+||++|..+++.|.++.+. ++..+...++.. +. +. +. +.+...-|+.+ +.++++
T Consensus 1 ~~~VaIvGatG~vG~el~~lL~~h~fp~~el~~~~s~~~aG----~~---~~--~~--~~~~~~~~~~~-----~~~~~~ 64 (344)
T 3tz6_A 1 GLSIGIVGATGQVGQVMRTLLDERDFPASAVRFFASARSQG----RK---LA--FR--GQEIEVEDAET-----ADPSGL 64 (344)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEECTTTSS----CE---EE--ET--TEEEEEEETTT-----SCCTTC
T ss_pred CCEEEEECCCChHHHHHHHHHHhCCCCceEEEEEECcccCC----Cc---ee--ec--CCceEEEeCCH-----HHhccC
Confidence 378999999999999999998887433 455554332211 00 00 11 12222223322 234789
Q ss_pred CEEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCc
Q 047227 85 EVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSP 132 (485)
Q Consensus 85 d~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~ 132 (485)
|+||-+.+. ..++.....+.+.|+ ++|=.|+.
T Consensus 65 Dvvf~a~~~---------------~~s~~~a~~~~~~G~-~vID~Sa~ 96 (344)
T 3tz6_A 65 DIALFSAGS---------------AMSKVQAPRFAAAGV-TVIDNSSA 96 (344)
T ss_dssp SEEEECSCH---------------HHHHHHHHHHHHTTC-EEEECSST
T ss_pred CEEEECCCh---------------HHHHHHHHHHHhCCC-EEEECCCc
Confidence 999988761 123455666667787 67777764
|
| >1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=95.63 E-value=0.046 Score=52.60 Aligned_cols=112 Identities=14% Similarity=0.077 Sum_probs=69.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCc-eEEEeecCCccccCCccchhhhhhhhc-CCCeEEEEecCCCHHHHHHHhcCCC
Q 047227 8 RLCVVTGGRGFAARHLVEMLIRYDMF-SVRIADLSDSIALEPHEEQGILGEALR-SGRAHYVSFDLRHKAQVLQALQGAE 85 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~~G~~-~V~~~~r~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~Dl~d~~~l~~~~~~~d 85 (485)
|+|.|+|+ |.+|..++..|...|+. +|+++|+........... +.+... ........ .|. +.++++|
T Consensus 1 mkI~VIGa-G~~G~~la~~l~~~g~~~~V~l~D~~~~~~~~~~~~---l~~~~~~~~~~~i~~---~d~----~~~~~aD 69 (319)
T 1a5z_A 1 MKIGIVGL-GRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALD---LIHGTPFTRRANIYA---GDY----ADLKGSD 69 (319)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHH---HHHHGGGSCCCEEEE---CCG----GGGTTCS
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHHH---HHhhhhhcCCcEEEe---CCH----HHhCCCC
Confidence 58999997 99999999999999831 799998864321110000 011000 01222222 232 3568899
Q ss_pred EEEEcCCCCCC-CCchhhhHHHHHHHHHHHHHHHHhcCCC-EEEEec
Q 047227 86 VVFHMAAPNSS-INNHKLHHSVNVEGTKNVIDACAELKVK-RLIYTS 130 (485)
Q Consensus 86 ~Vih~aa~~~~-~~~~~~~~~~nv~~t~~ll~a~~~~~v~-r~V~~S 130 (485)
+||-+++.... ..........|+...+.+++.+.+.... .+|.+|
T Consensus 70 vViiav~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~~~~~ii~~t 116 (319)
T 1a5z_A 70 VVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVT 116 (319)
T ss_dssp EEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred EEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeC
Confidence 99999884332 2234456778888888999988876543 444443
|
| >3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A* | Back alignment and structure |
|---|
Probab=95.62 E-value=0.031 Score=55.71 Aligned_cols=71 Identities=28% Similarity=0.334 Sum_probs=53.0
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCC
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGA 84 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 84 (485)
+++++|+|+| .|.+|+.+++.+.+.| ++|.+++ .+.. +... . ......+.+|..|.+.+.++.+.+
T Consensus 22 m~~~~I~ilG-gG~lg~~l~~aa~~lG-~~v~~~d-~~~~---p~~~-------~-ad~~~~~~~~~~d~~~l~~~a~~~ 87 (403)
T 3k5i_A 22 WNSRKVGVLG-GGQLGRMLVESANRLN-IQVNVLD-ADNS---PAKQ-------I-SAHDGHVTGSFKEREAVRQLAKTC 87 (403)
T ss_dssp CSCCEEEEEC-CSHHHHHHHHHHHHHT-CEEEEEE-STTC---TTGG-------G-CCSSCCEESCTTCHHHHHHHHTTC
T ss_pred CCCCEEEEEC-CCHHHHHHHHHHHHCC-CEEEEEE-CCCC---cHHH-------h-ccccceeecCCCCHHHHHHHHHhC
Confidence 4467999999 5799999999999999 6888888 4321 1000 0 112245778999999999999999
Q ss_pred CEEEE
Q 047227 85 EVVFH 89 (485)
Q Consensus 85 d~Vih 89 (485)
|+|+.
T Consensus 88 d~i~~ 92 (403)
T 3k5i_A 88 DVVTA 92 (403)
T ss_dssp SEEEE
T ss_pred CEEEE
Confidence 98874
|
| >2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A | Back alignment and structure |
|---|
Probab=95.56 E-value=0.1 Score=49.65 Aligned_cols=112 Identities=14% Similarity=0.067 Sum_probs=70.2
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCc-eEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcC
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMF-SVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQG 83 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~ 83 (485)
.+++||.|+| +|.+|+.++..|+.+|.. +|.++|.... .... ...+. + ...++++.. .| + +.+++
T Consensus 12 ~~~~kV~ViG-aG~vG~~~a~~l~~~g~~~ev~L~Di~~~-~~g~--a~dl~-~-~~~~~i~~t-~d------~-~~l~~ 77 (303)
T 2i6t_A 12 KTVNKITVVG-GGELGIACTLAISAKGIADRLVLLDLSEG-TKGA--TMDLE-I-FNLPNVEIS-KD------L-SASAH 77 (303)
T ss_dssp --CCEEEEEC-CSHHHHHHHHHHHHHTCCSEEEEECCC------C--HHHHH-H-HTCTTEEEE-SC------G-GGGTT
T ss_pred CCCCEEEEEC-CCHHHHHHHHHHHhcCCCCEEEEEcCCcc-hHHH--HHHHh-h-hcCCCeEEe-CC------H-HHHCC
Confidence 3458999999 599999999999998832 7999998753 1111 11111 1 222344442 33 2 45889
Q ss_pred CCEEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCC-EEEEec
Q 047227 84 AEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVK-RLIYTS 130 (485)
Q Consensus 84 ~d~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~-r~V~~S 130 (485)
+|+||-.++..........+...|+.-.+.+++.+.+.... .++.+|
T Consensus 78 aD~Vi~aag~~~pG~tR~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~s 125 (303)
T 2i6t_A 78 SKVVIFTVNSLGSSQSYLDVVQSNVDMFRALVPALGHYSQHSVLLVAS 125 (303)
T ss_dssp CSEEEECCCC----CCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEECS
T ss_pred CCEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcC
Confidence 99999999853322344566788888889999988887643 344444
|
| >1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8 | Back alignment and structure |
|---|
Probab=95.54 E-value=0.023 Score=47.37 Aligned_cols=88 Identities=13% Similarity=0.111 Sum_probs=54.2
Q ss_pred CCCCEEEEEcCC---CchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHh
Q 047227 5 ENERLCVVTGGR---GFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQAL 81 (485)
Q Consensus 5 ~~~~~iLVtGgt---G~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~ 81 (485)
...++|.|.|++ |-+|..+++.|++.| ++|..++...... .++..+ .+ +.++.
T Consensus 12 ~~p~~IavIGaS~~~g~~G~~~~~~L~~~G-~~V~~vnp~~~~i----------------~G~~~~-~s------~~el~ 67 (138)
T 1y81_A 12 KEFRKIALVGASKNPAKYGNIILKDLLSKG-FEVLPVNPNYDEI----------------EGLKCY-RS------VRELP 67 (138)
T ss_dssp --CCEEEEETCCSCTTSHHHHHHHHHHHTT-CEEEEECTTCSEE----------------TTEECB-SS------GGGSC
T ss_pred cCCCeEEEEeecCCCCCHHHHHHHHHHHCC-CEEEEeCCCCCeE----------------CCeeec-CC------HHHhC
Confidence 346799999987 899999999999999 5777766542100 122211 12 23334
Q ss_pred cCCCEEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecC
Q 047227 82 QGAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSS 131 (485)
Q Consensus 82 ~~~d~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS 131 (485)
+.+|+|+-+.. ......+++.|.+.|++.++..+|
T Consensus 68 ~~vDlvii~vp---------------~~~v~~v~~~~~~~g~~~i~~~~~ 102 (138)
T 1y81_A 68 KDVDVIVFVVP---------------PKVGLQVAKEAVEAGFKKLWFQPG 102 (138)
T ss_dssp TTCCEEEECSC---------------HHHHHHHHHHHHHTTCCEEEECTT
T ss_pred CCCCEEEEEeC---------------HHHHHHHHHHHHHcCCCEEEEcCc
Confidence 46898886543 122335666677788877665543
|
| >1t4b_A Aspartate-semialdehyde dehydrogenase; asadh, HOSR, lysine biosynthesis, NADP+ oxidoreductase (phosphorylating), domain movement; 1.60A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1t4d_A 1brm_A 1gl3_A* 1nwc_A 1ta4_A 1tb4_A 1ps8_A 1pr3_A 1oza_A 1pqu_A* 1pqp_A 1nwh_A* 1nx6_A* 1pu2_A* 1q2x_A* | Back alignment and structure |
|---|
Probab=95.51 E-value=0.074 Score=52.11 Aligned_cols=95 Identities=13% Similarity=0.070 Sum_probs=54.2
Q ss_pred CCEEEEEcCCCchHHHHHHH-HHhcCC--ceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcC
Q 047227 7 ERLCVVTGGRGFAARHLVEM-LIRYDM--FSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQG 83 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~-Ll~~G~--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~ 83 (485)
|++|.|.|+||++|+.+++. |.++++ ..++.+... +... . .. .... .+....|..|++. +++
T Consensus 1 m~kVaIvGAtG~vG~~llr~ll~~~~~~~v~i~~~~~~-s~G~----~---v~-~~~g--~~i~~~~~~~~~~----~~~ 65 (367)
T 1t4b_A 1 MQNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTS-QLGQ----A---AP-SFGG--TTGTLQDAFDLEA----LKA 65 (367)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESS-STTS----B---CC-GGGT--CCCBCEETTCHHH----HHT
T ss_pred CcEEEEECCCCHHHHHHHHHHHhcCCCCeEEEEEEEeC-CCCC----C---cc-ccCC--CceEEEecCChHH----hcC
Confidence 36999999999999999995 444442 244444432 1110 0 00 0111 1223335556554 358
Q ss_pred CCEEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCE-EEEecC
Q 047227 84 AEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKR-LIYTSS 131 (485)
Q Consensus 84 ~d~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r-~V~~SS 131 (485)
+|+||-+.+ ...++.....+.+.|+++ +|=.||
T Consensus 66 ~DvVf~a~g---------------~~~s~~~a~~~~~~G~k~vVID~ss 99 (367)
T 1t4b_A 66 LDIIVTCQG---------------GDYTNEIYPKLRESGWQGYWIDAAS 99 (367)
T ss_dssp CSEEEECSC---------------HHHHHHHHHHHHHTTCCCEEEECSS
T ss_pred CCEEEECCC---------------chhHHHHHHHHHHCCCCEEEEcCCh
Confidence 999998876 123445677777888753 443343
|
| >3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A* | Back alignment and structure |
|---|
Probab=95.49 E-value=0.034 Score=53.18 Aligned_cols=83 Identities=13% Similarity=0.103 Sum_probs=51.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCCC
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGAE 85 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~d 85 (485)
.++++||+|+ |-.|+.++..|.+.|..+|++++|....... .++ +........+......+..+.+.+.+.+.++|
T Consensus 147 ~gk~~lVlGA-GGaaraia~~L~~~G~~~v~v~nRt~~~~~~-a~~--la~~~~~~~~~~v~~~~~~~l~~~~~~l~~~D 222 (312)
T 3t4e_A 147 RGKTMVLLGA-GGAATAIGAQAAIEGIKEIKLFNRKDDFFEK-AVA--FAKRVNENTDCVVTVTDLADQHAFTEALASAD 222 (312)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEECSSTHHHH-HHH--HHHHHHHHSSCEEEEEETTCHHHHHHHHHHCS
T ss_pred CCCEEEEECc-CHHHHHHHHHHHHcCCCEEEEEECCCchHHH-HHH--HHHHhhhccCcceEEechHhhhhhHhhccCce
Confidence 5689999995 8899999999999995489999987321000 000 01111111223334456666544556667788
Q ss_pred EEEEcCC
Q 047227 86 VVFHMAA 92 (485)
Q Consensus 86 ~Vih~aa 92 (485)
.||++.+
T Consensus 223 iIINaTp 229 (312)
T 3t4e_A 223 ILTNGTK 229 (312)
T ss_dssp EEEECSS
T ss_pred EEEECCc
Confidence 8888766
|
| >1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* | Back alignment and structure |
|---|
Probab=95.48 E-value=0.06 Score=51.63 Aligned_cols=115 Identities=10% Similarity=0.063 Sum_probs=69.6
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCc-eEEEeecCCccccCCccchhhhhhhhc-CCCeEEEEecCCCHHHHHHHhc
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMF-SVRIADLSDSIALEPHEEQGILGEALR-SGRAHYVSFDLRHKAQVLQALQ 82 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~-~V~~~~r~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~Dl~d~~~l~~~~~ 82 (485)
.++|+|.|+|+ |.+|..++..|...|+. +|+++++....... .... +.+... ......... .|. +.++
T Consensus 5 ~~~mkI~IiGa-G~vG~~~a~~l~~~g~~~~V~l~d~~~~~~~~--~~~~-~~~~~~~~~~~~v~~~--~~~----~~~~ 74 (319)
T 1lld_A 5 VKPTKLAVIGA-GAVGSTLAFAAAQRGIAREIVLEDIAKERVEA--EVLD-MQHGSSFYPTVSIDGS--DDP----EICR 74 (319)
T ss_dssp --CCEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHH--HHHH-HHHTGGGSTTCEEEEE--SCG----GGGT
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHHHH--HHHH-HHhhhhhcCCeEEEeC--CCH----HHhC
Confidence 34589999997 99999999999999942 89999887432110 0000 011010 112232222 122 3467
Q ss_pred CCCEEEEcCCCCC-CCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEe
Q 047227 83 GAEVVFHMAAPNS-SINNHKLHHSVNVEGTKNVIDACAELKVKRLIYT 129 (485)
Q Consensus 83 ~~d~Vih~aa~~~-~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~ 129 (485)
++|+||-+++... ...........|....+.+++.+++.+.+.+|..
T Consensus 75 ~aD~Vii~v~~~~~~g~~r~~~~~~n~~~~~~~~~~i~~~~~~~~vi~ 122 (319)
T 1lld_A 75 DADMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYML 122 (319)
T ss_dssp TCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEE
T ss_pred CCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCceEEE
Confidence 8999999987332 2234456678888888888888877654434433
|
| >1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=95.47 E-value=0.0066 Score=57.10 Aligned_cols=37 Identities=24% Similarity=0.273 Sum_probs=32.2
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCc
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDS 43 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~ 43 (485)
..+++++|+|+ |-+|+.++..|.+.| .+|++.+|...
T Consensus 117 l~~k~vlViGa-Gg~g~a~a~~L~~~G-~~V~v~~R~~~ 153 (271)
T 1nyt_A 117 RPGLRILLIGA-GGASRGVLLPLLSLD-CAVTITNRTVS 153 (271)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTT-CEEEEECSSHH
T ss_pred cCCCEEEEECC-cHHHHHHHHHHHHcC-CEEEEEECCHH
Confidence 35689999997 779999999999999 69999988754
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=95.47 E-value=0.01 Score=57.35 Aligned_cols=75 Identities=15% Similarity=0.085 Sum_probs=49.9
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCH---HHHHHHh
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHK---AQVLQAL 81 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~---~~l~~~~ 81 (485)
..+++|||+||+|-+|...++.+...| .+|+++++++.+. .+... + +... ..|..+. +.+.+..
T Consensus 139 ~~g~~VlV~Ga~g~iG~~~~~~a~~~G-a~Vi~~~~~~~~~-------~~~~~-~---Ga~~-~~~~~~~~~~~~~~~~~ 205 (325)
T 3jyn_A 139 KPGEIILFHAAAGGVGSLACQWAKALG-AKLIGTVSSPEKA-------AHAKA-L---GAWE-TIDYSHEDVAKRVLELT 205 (325)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHHT-CEEEEEESSHHHH-------HHHHH-H---TCSE-EEETTTSCHHHHHHHHT
T ss_pred CCCCEEEEEcCCcHHHHHHHHHHHHCC-CEEEEEeCCHHHH-------HHHHH-c---CCCE-EEeCCCccHHHHHHHHh
Confidence 356899999999999999999999999 5899888764311 01111 1 2222 1244332 3444444
Q ss_pred c--CCCEEEEcCC
Q 047227 82 Q--GAEVVFHMAA 92 (485)
Q Consensus 82 ~--~~d~Vih~aa 92 (485)
. ++|+||++++
T Consensus 206 ~~~g~Dvvid~~g 218 (325)
T 3jyn_A 206 DGKKCPVVYDGVG 218 (325)
T ss_dssp TTCCEEEEEESSC
T ss_pred CCCCceEEEECCC
Confidence 3 5999999987
|
| >1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* | Back alignment and structure |
|---|
Probab=95.47 E-value=0.037 Score=54.33 Aligned_cols=97 Identities=15% Similarity=0.083 Sum_probs=64.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCCC
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGAE 85 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~d 85 (485)
.+.+|||+|+ |-+|...++.+...| .+|+++++++.. +......-+... ..|..+.+.+.++..++|
T Consensus 187 ~g~~VlV~Ga-G~vG~~~~q~a~~~G-a~Vi~~~~~~~~----------~~~~~~~lGa~~-v~~~~~~~~~~~~~~~~D 253 (366)
T 1yqd_A 187 PGKHIGIVGL-GGLGHVAVKFAKAFG-SKVTVISTSPSK----------KEEALKNFGADS-FLVSRDQEQMQAAAGTLD 253 (366)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTT-CEEEEEESCGGG----------HHHHHHTSCCSE-EEETTCHHHHHHTTTCEE
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCC-CEEEEEeCCHHH----------HHHHHHhcCCce-EEeccCHHHHHHhhCCCC
Confidence 5689999995 999999999999999 589888876431 111111123332 246677777777777899
Q ss_pred EEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecC
Q 047227 86 VVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSS 131 (485)
Q Consensus 86 ~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS 131 (485)
+||++++.... ....+++++..| ++|.+++
T Consensus 254 ~vid~~g~~~~--------------~~~~~~~l~~~G--~iv~~g~ 283 (366)
T 1yqd_A 254 GIIDTVSAVHP--------------LLPLFGLLKSHG--KLILVGA 283 (366)
T ss_dssp EEEECCSSCCC--------------SHHHHHHEEEEE--EEEECCC
T ss_pred EEEECCCcHHH--------------HHHHHHHHhcCC--EEEEEcc
Confidence 99999983211 113445555444 7887775
|
| >3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A* | Back alignment and structure |
|---|
Probab=95.44 E-value=0.064 Score=53.04 Aligned_cols=69 Identities=9% Similarity=0.052 Sum_probs=52.4
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCC
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGA 84 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 84 (485)
.++++|+|+| .|.+|+.+++.+.+.| ++|.+++..+.... . .--...+..|..|.+.+.++++.+
T Consensus 12 ~~~k~IlIlG-~G~~g~~la~aa~~~G-~~vi~~d~~~~~~~---~----------~~ad~~~~~~~~d~~~l~~~~~~~ 76 (389)
T 3q2o_A 12 LPGKTIGIIG-GGQLGRMMALAAKEMG-YKIAVLDPTKNSPC---A----------QVADIEIVASYDDLKAIQHLAEIS 76 (389)
T ss_dssp CTTSEEEEEC-CSHHHHHHHHHHHHTT-CEEEEEESSTTCTT---T----------TTCSEEEECCTTCHHHHHHHHHTC
T ss_pred CCCCEEEEEC-CCHHHHHHHHHHHHcC-CEEEEEeCCCCCch---H----------HhCCceEecCcCCHHHHHHHHHhC
Confidence 4578999998 7789999999999999 58888876543110 0 011235668999999999999999
Q ss_pred CEEE
Q 047227 85 EVVF 88 (485)
Q Consensus 85 d~Vi 88 (485)
|+|.
T Consensus 77 dvI~ 80 (389)
T 3q2o_A 77 DVVT 80 (389)
T ss_dssp SEEE
T ss_pred CEee
Confidence 9885
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=95.38 E-value=0.014 Score=56.84 Aligned_cols=97 Identities=14% Similarity=0.221 Sum_probs=59.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCH---HHHHHHhc
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHK---AQVLQALQ 82 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~---~~l~~~~~ 82 (485)
.+.+|||+|+ |-+|...++.+...|..+|+++++++.+. .+... + ++..+ .|..+. +.+.++..
T Consensus 167 ~g~~VlV~Ga-G~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~-------~~~~~-~---Ga~~~-~~~~~~~~~~~v~~~~~ 233 (348)
T 2d8a_A 167 SGKSVLITGA-GPLGLLGIAVAKASGAYPVIVSEPSDFRR-------ELAKK-V---GADYV-INPFEEDVVKEVMDITD 233 (348)
T ss_dssp TTCCEEEECC-SHHHHHHHHHHHHTTCCSEEEECSCHHHH-------HHHHH-H---TCSEE-ECTTTSCHHHHHHHHTT
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHH-------HHHHH-h---CCCEE-ECCCCcCHHHHHHHHcC
Confidence 4678999999 99999999999999932888888764311 01111 1 22222 344432 23444433
Q ss_pred --CCCEEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecC
Q 047227 83 --GAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSS 131 (485)
Q Consensus 83 --~~d~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS 131 (485)
++|+||++++. + ......++.++..| +++.+++
T Consensus 234 g~g~D~vid~~g~------~--------~~~~~~~~~l~~~G--~iv~~g~ 268 (348)
T 2d8a_A 234 GNGVDVFLEFSGA------P--------KALEQGLQAVTPAG--RVSLLGL 268 (348)
T ss_dssp TSCEEEEEECSCC------H--------HHHHHHHHHEEEEE--EEEECCC
T ss_pred CCCCCEEEECCCC------H--------HHHHHHHHHHhcCC--EEEEEcc
Confidence 59999999872 0 12234455555444 7887765
|
| >1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A* | Back alignment and structure |
|---|
Probab=95.37 E-value=0.068 Score=51.98 Aligned_cols=112 Identities=9% Similarity=0.026 Sum_probs=68.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccc------------hhhhhhhhc--CCC--eEEEEec
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEE------------QGILGEALR--SGR--AHYVSFD 70 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~------------~~~~~~~~~--~~~--v~~~~~D 70 (485)
..+|+|.| .|-+|+++++.|...|--.++++|...-...+...+ .......+. .+. ++.+..+
T Consensus 36 ~~~VlivG-~GGlG~~ia~~La~~Gvg~itlvD~d~V~~sNL~rq~~~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~~~~ 114 (346)
T 1y8q_A 36 ASRVLLVG-LKGLGAEIAKNLILAGVKGLTMLDHEQVTPEDPGAQFLIRTGSVGRNRAEASLERAQNLNPMVDVKVDTED 114 (346)
T ss_dssp TCEEEEEC-CSHHHHHHHHHHHHHTCSEEEEECCCBCCSSCGGGCTTSCSSCTTSBHHHHHHHHHHHTCTTSEEEEECSC
T ss_pred CCeEEEEC-CCHHHHHHHHHHHHcCCCEEEEEECCCcchhhCCCCCccccccCcCCHHHHHHHHHHhHCCCeEEEEEecc
Confidence 46899998 678999999999999966899998653211111100 000111111 244 4444445
Q ss_pred CCCHHHHHHHhcCCCEEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCccccc
Q 047227 71 LRHKAQVLQALQGAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVVF 136 (485)
Q Consensus 71 l~d~~~l~~~~~~~d~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy~ 136 (485)
+.+ ...+.++++|+||.+.. |...-..+-++|++.++ .+|..++.+.+|
T Consensus 115 ~~~--~~~~~~~~~dvVv~~~d--------------~~~~r~~ln~~~~~~~i-p~i~~~~~G~~G 163 (346)
T 1y8q_A 115 IEK--KPESFFTQFDAVCLTCC--------------SRDVIVKVDQICHKNSI-KFFTGDVFGYHG 163 (346)
T ss_dssp GGG--CCHHHHTTCSEEEEESC--------------CHHHHHHHHHHHHHTTC-EEEEEEEEBTEE
T ss_pred cCc--chHHHhcCCCEEEEcCC--------------CHHHHHHHHHHHHHcCC-CEEEEeecccEE
Confidence 443 23566789999997642 12233457788888885 688777665554
|
| >4dpl_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; HET: NAP; 1.90A {Sulfolobus tokodaii} PDB: 4dpk_A* 4dpm_A* | Back alignment and structure |
|---|
Probab=95.37 E-value=0.0071 Score=59.18 Aligned_cols=35 Identities=14% Similarity=0.116 Sum_probs=28.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeec
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADL 40 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r 40 (485)
++++|.|.|+||++|..+++.|.++...++..+..
T Consensus 6 ~~~kVaIvGATGyvG~eLlrlL~~hP~~el~~l~S 40 (359)
T 4dpl_A 6 RTLKAAILGATGLVGIEYVRMLSNHPYIKPAYLAG 40 (359)
T ss_dssp CCEEEEETTTTSTTHHHHHHHHTTCSSEEEEEEEE
T ss_pred CCCeEEEECCCCHHHHHHHHHHHhCCCceEEEEEC
Confidence 34799999999999999999888776456666643
|
| >4dpk_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; 2.05A {Sulfolobus tokodaii} PDB: 4dpm_A* | Back alignment and structure |
|---|
Probab=95.37 E-value=0.0071 Score=59.18 Aligned_cols=35 Identities=14% Similarity=0.116 Sum_probs=28.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeec
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADL 40 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r 40 (485)
++++|.|.|+||++|..+++.|.++...++..+..
T Consensus 6 ~~~kVaIvGATGyvG~eLlrlL~~hP~~el~~l~S 40 (359)
T 4dpk_A 6 RTLKAAILGATGLVGIEYVRMLSNHPYIKPAYLAG 40 (359)
T ss_dssp CCEEEEETTTTSTTHHHHHHHHTTCSSEEEEEEEE
T ss_pred CCCeEEEECCCCHHHHHHHHHHHhCCCceEEEEEC
Confidence 34799999999999999999888776456666643
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=95.36 E-value=0.015 Score=56.40 Aligned_cols=97 Identities=14% Similarity=0.088 Sum_probs=60.7
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCC---HHHHHHHh
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRH---KAQVLQAL 81 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d---~~~l~~~~ 81 (485)
..+++|||+||+|-+|...++.+...| .+|+++++++.+. .+... -+...+ .|..+ .+.+.+..
T Consensus 147 ~~g~~vlV~Ga~g~iG~~~~~~a~~~G-a~Vi~~~~~~~~~-------~~~~~----~ga~~~-~~~~~~~~~~~~~~~~ 213 (334)
T 3qwb_A 147 KKGDYVLLFAAAGGVGLILNQLLKMKG-AHTIAVASTDEKL-------KIAKE----YGAEYL-INASKEDILRQVLKFT 213 (334)
T ss_dssp CTTCEEEESSTTBHHHHHHHHHHHHTT-CEEEEEESSHHHH-------HHHHH----TTCSEE-EETTTSCHHHHHHHHT
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEeCCHHHH-------HHHHH----cCCcEE-EeCCCchHHHHHHHHh
Confidence 456899999999999999999999999 5899988754311 01111 122222 23333 23444444
Q ss_pred c--CCCEEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecC
Q 047227 82 Q--GAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSS 131 (485)
Q Consensus 82 ~--~~d~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS 131 (485)
. ++|+||++++. . .....++.++..| ++|.++.
T Consensus 214 ~~~g~D~vid~~g~--------~-------~~~~~~~~l~~~G--~iv~~G~ 248 (334)
T 3qwb_A 214 NGKGVDASFDSVGK--------D-------TFEISLAALKRKG--VFVSFGN 248 (334)
T ss_dssp TTSCEEEEEECCGG--------G-------GHHHHHHHEEEEE--EEEECCC
T ss_pred CCCCceEEEECCCh--------H-------HHHHHHHHhccCC--EEEEEcC
Confidence 3 59999999872 0 1223455555544 7887664
|
| >2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=95.35 E-value=0.0087 Score=57.08 Aligned_cols=76 Identities=14% Similarity=0.084 Sum_probs=51.0
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCC
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGA 84 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 84 (485)
..+++++|+|+ |-+|+.++..|.+.|..+|++.+|...+... +...+... .. +..+.+++.+.+.++
T Consensus 139 l~~~~vlVlGa-Gg~g~aia~~L~~~G~~~V~v~nR~~~ka~~-------la~~~~~~-~~----~~~~~~~~~~~~~~a 205 (297)
T 2egg_A 139 LDGKRILVIGA-GGGARGIYFSLLSTAAERIDMANRTVEKAER-------LVREGDER-RS----AYFSLAEAETRLAEY 205 (297)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHTTTCSEEEEECSSHHHHHH-------HHHHSCSS-SC----CEECHHHHHHTGGGC
T ss_pred CCCCEEEEECc-HHHHHHHHHHHHHCCCCEEEEEeCCHHHHHH-------HHHHhhhc-cC----ceeeHHHHHhhhccC
Confidence 35689999996 7899999999999995489999987542110 11111110 00 112335677778889
Q ss_pred CEEEEcCCC
Q 047227 85 EVVFHMAAP 93 (485)
Q Consensus 85 d~Vih~aa~ 93 (485)
|+||++.+.
T Consensus 206 DivIn~t~~ 214 (297)
T 2egg_A 206 DIIINTTSV 214 (297)
T ss_dssp SEEEECSCT
T ss_pred CEEEECCCC
Confidence 999999873
|
| >3ax6_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp, ATP binding; HET: ADP; 2.20A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=95.34 E-value=0.049 Score=53.69 Aligned_cols=69 Identities=12% Similarity=0.154 Sum_probs=51.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCCCE
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGAEV 86 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~d~ 86 (485)
|++|+|+|+ |..|+.+++.|.+.| ++|.+++..+... ... . .-.++..|..|.+.+.++++++|+
T Consensus 1 M~~Ililg~-g~~g~~~~~a~~~~G-~~v~~~~~~~~~~---~~~-------~---~~~~~~~~~~d~~~l~~~~~~~d~ 65 (380)
T 3ax6_A 1 MKKIGIIGG-GQLGKMMTLEAKKMG-FYVIVLDPTPRSP---AGQ-------V---ADEQIVAGFFDSERIEDLVKGSDV 65 (380)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTT-CEEEEEESSTTCT---TGG-------G---SSEEEECCTTCHHHHHHHHHTCSE
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCC-CEEEEEeCCCCCc---hhh-------h---CceEEECCCCCHHHHHHHHhcCCE
Confidence 368999996 799999999999999 5888887653211 000 0 113567899999999998889999
Q ss_pred EEEc
Q 047227 87 VFHM 90 (485)
Q Consensus 87 Vih~ 90 (485)
|+-.
T Consensus 66 v~~~ 69 (380)
T 3ax6_A 66 TTYD 69 (380)
T ss_dssp EEES
T ss_pred EEec
Confidence 8853
|
| >3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A* | Back alignment and structure |
|---|
Probab=95.34 E-value=0.021 Score=53.69 Aligned_cols=69 Identities=10% Similarity=0.089 Sum_probs=49.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCCC
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGAE 85 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~d 85 (485)
.+++++|+|+ |-.|+.++..|.+.|..+|++++|...+..... .++.. ...+++.++++++|
T Consensus 116 ~~k~vlvlGa-Gg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la------------~~~~~-----~~~~~~~~~~~~aD 177 (277)
T 3don_A 116 EDAYILILGA-GGASKGIANELYKIVRPTLTVANRTMSRFNNWS------------LNINK-----INLSHAESHLDEFD 177 (277)
T ss_dssp GGCCEEEECC-SHHHHHHHHHHHTTCCSCCEEECSCGGGGTTCC------------SCCEE-----ECHHHHHHTGGGCS
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHH------------Hhccc-----ccHhhHHHHhcCCC
Confidence 4679999995 899999999999999448999998865322111 11221 13455677788899
Q ss_pred EEEEcCC
Q 047227 86 VVFHMAA 92 (485)
Q Consensus 86 ~Vih~aa 92 (485)
+||++.+
T Consensus 178 iVInaTp 184 (277)
T 3don_A 178 IIINTTP 184 (277)
T ss_dssp EEEECCC
T ss_pred EEEECcc
Confidence 9998875
|
| >3pzr_A Aspartate-semialdehyde dehydrogenase; NADP, oxidoreductase-oxidoreductase inhibitor complex; HET: NAP; 1.75A {Vibrio cholerae} PDB: 1mc4_A 1mb4_A* 3q0e_A | Back alignment and structure |
|---|
Probab=95.30 E-value=0.089 Score=51.42 Aligned_cols=94 Identities=18% Similarity=0.126 Sum_probs=53.2
Q ss_pred CEEEEEcCCCchHHHHHH-HHHhcCC--ceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCC
Q 047227 8 RLCVVTGGRGFAARHLVE-MLIRYDM--FSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGA 84 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~-~Ll~~G~--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 84 (485)
|+|.|.|+||++|+.+++ .|.++.. .++..+...+. . ....+ +.... ...-|..+.+. ++++
T Consensus 1 ~~VaIvGATG~vG~ellr~lL~~hp~~~~~l~~~ss~~a-G-~~~~~-------~~~~~--~~~~~~~~~~~----~~~~ 65 (370)
T 3pzr_A 1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQI-G-VPAPN-------FGKDA--GMLHDAFDIES----LKQL 65 (370)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSST-T-SBCCC-------SSSCC--CBCEETTCHHH----HTTC
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCCCceEEEEEecccc-C-cCHHH-------hCCCc--eEEEecCChhH----hccC
Confidence 589999999999999999 6666652 25555533211 1 00000 11111 11224444433 4789
Q ss_pred CEEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCC-EEEEecC
Q 047227 85 EVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVK-RLIYTSS 131 (485)
Q Consensus 85 d~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~-r~V~~SS 131 (485)
|+||-+.+. ..++.....+.+.|++ ++|=.||
T Consensus 66 Dvvf~a~~~---------------~~s~~~~~~~~~~G~k~~VID~ss 98 (370)
T 3pzr_A 66 DAVITCQGG---------------SYTEKVYPALRQAGWKGYWIDAAS 98 (370)
T ss_dssp SEEEECSCH---------------HHHHHHHHHHHHTTCCCEEEECSS
T ss_pred CEEEECCCh---------------HHHHHHHHHHHHCCCCEEEEeCCc
Confidence 999988761 1234556666677874 5555554
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=95.30 E-value=0.016 Score=56.23 Aligned_cols=75 Identities=15% Similarity=0.195 Sum_probs=49.8
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCH---HHHHHHh
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHK---AQVLQAL 81 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~---~~l~~~~ 81 (485)
..+++|||+|++|-+|...++.+...| .+|++++++.... ..... + +...+ .|..+. +.+.+..
T Consensus 143 ~~g~~VlV~Ga~g~iG~~~~~~a~~~G-a~Vi~~~~~~~~~-------~~~~~-l---ga~~~-~~~~~~~~~~~~~~~~ 209 (340)
T 3gms_A 143 QRNDVLLVNACGSAIGHLFAQLSQILN-FRLIAVTRNNKHT-------EELLR-L---GAAYV-IDTSTAPLYETVMELT 209 (340)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHHT-CEEEEEESSSTTH-------HHHHH-H---TCSEE-EETTTSCHHHHHHHHT
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHcC-CEEEEEeCCHHHH-------HHHHh-C---CCcEE-EeCCcccHHHHHHHHh
Confidence 356899999999999999999999999 5899988765411 01111 1 22222 244432 3344444
Q ss_pred c--CCCEEEEcCC
Q 047227 82 Q--GAEVVFHMAA 92 (485)
Q Consensus 82 ~--~~d~Vih~aa 92 (485)
. ++|+||++++
T Consensus 210 ~~~g~Dvvid~~g 222 (340)
T 3gms_A 210 NGIGADAAIDSIG 222 (340)
T ss_dssp TTSCEEEEEESSC
T ss_pred CCCCCcEEEECCC
Confidence 3 5999999987
|
| >1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* | Back alignment and structure |
|---|
Probab=95.24 E-value=0.018 Score=56.15 Aligned_cols=75 Identities=13% Similarity=0.207 Sum_probs=50.2
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhc-CCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCH---HHHHHH
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRY-DMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHK---AQVLQA 80 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~-G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~---~~l~~~ 80 (485)
..+++|||+|++|-+|..+++.+... | .+|.++++++... ..... + +... ..|..+. +++.++
T Consensus 169 ~~g~~vlV~Gagg~iG~~~~~~a~~~~G-a~Vi~~~~~~~~~-------~~~~~-~---g~~~-~~~~~~~~~~~~~~~~ 235 (347)
T 1jvb_A 169 DPTKTLLVVGAGGGLGTMAVQIAKAVSG-ATIIGVDVREEAV-------EAAKR-A---GADY-VINASMQDPLAEIRRI 235 (347)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHHTC-CEEEEEESSHHHH-------HHHHH-H---TCSE-EEETTTSCHHHHHHHH
T ss_pred CCCCEEEEECCCccHHHHHHHHHHHcCC-CeEEEEcCCHHHH-------HHHHH-h---CCCE-EecCCCccHHHHHHHH
Confidence 35689999999999999999999999 9 5898888764311 01111 1 2222 2344443 335555
Q ss_pred hc--CCCEEEEcCC
Q 047227 81 LQ--GAEVVFHMAA 92 (485)
Q Consensus 81 ~~--~~d~Vih~aa 92 (485)
.. ++|+||++++
T Consensus 236 ~~~~~~d~vi~~~g 249 (347)
T 1jvb_A 236 TESKGVDAVIDLNN 249 (347)
T ss_dssp TTTSCEEEEEESCC
T ss_pred hcCCCceEEEECCC
Confidence 53 6999999997
|
| >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=95.19 E-value=0.032 Score=53.24 Aligned_cols=73 Identities=15% Similarity=0.041 Sum_probs=45.9
Q ss_pred CCCCCCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHH
Q 047227 1 MSGEENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQA 80 (485)
Q Consensus 1 M~~~~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~ 80 (485)
|+-+.++|+|.|.| .|.+|..++..|.+.| ++|++.+|++... +.+...+......|+ .++
T Consensus 1 M~~~~~~~~I~iIG-~G~mG~~~a~~l~~~G-~~V~~~dr~~~~~-----------~~~~~~g~~~~~~~~------~e~ 61 (303)
T 3g0o_A 1 MSLTGTDFHVGIVG-LGSMGMGAARSCLRAG-LSTWGADLNPQAC-----------ANLLAEGACGAAASA------REF 61 (303)
T ss_dssp ------CCEEEEEC-CSHHHHHHHHHHHHTT-CEEEEECSCHHHH-----------HHHHHTTCSEEESSS------TTT
T ss_pred CCCCCCCCeEEEEC-CCHHHHHHHHHHHHCC-CeEEEEECCHHHH-----------HHHHHcCCccccCCH------HHH
Confidence 55455568999997 8999999999999999 5999999875421 111112222222232 345
Q ss_pred hcCCCEEEEcCC
Q 047227 81 LQGAEVVFHMAA 92 (485)
Q Consensus 81 ~~~~d~Vih~aa 92 (485)
++++|+||-+..
T Consensus 62 ~~~aDvvi~~vp 73 (303)
T 3g0o_A 62 AGVVDALVILVV 73 (303)
T ss_dssp TTTCSEEEECCS
T ss_pred HhcCCEEEEECC
Confidence 677899987764
|
| >3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A | Back alignment and structure |
|---|
Probab=95.18 E-value=0.059 Score=52.54 Aligned_cols=109 Identities=11% Similarity=0.049 Sum_probs=67.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccc------------h----hhhhhhhcCCCeEEEEec
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEE------------Q----GILGEALRSGRAHYVSFD 70 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~------------~----~~~~~~~~~~~v~~~~~D 70 (485)
+.+|+|.| .|-+|++++..|...|.-+++++|...-...+...+ . ..+......-+++.+..+
T Consensus 118 ~~~VlvvG-~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~v~~~~~~ 196 (353)
T 3h5n_A 118 NAKVVILG-CGGIGNHVSVILATSGIGEIILIDNDQIENTNLTRQVLFSEDDVGKNKTEVIKRELLKRNSEISVSEIALN 196 (353)
T ss_dssp TCEEEEEC-CSHHHHHHHHHHHHHTCSEEEEEECCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEEECC
T ss_pred CCeEEEEC-CCHHHHHHHHHHHhCCCCeEEEECCCcCcccccccccCCChHHCCChHHHHHHHHHHHHCCCCeEEEeecc
Confidence 56899998 578999999999999976899999864211111110 0 001111112345666677
Q ss_pred CCCHHHHHHHhcCCCEEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecC
Q 047227 71 LRHKAQVLQALQGAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSS 131 (485)
Q Consensus 71 l~d~~~l~~~~~~~d~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS 131 (485)
+.+..++.+ ++++|+||.+.. ++.. .-..+-++|++.++ .+|+.+.
T Consensus 197 i~~~~~~~~-~~~~DlVvd~~D------n~~~-------~r~~ln~~c~~~~~-p~i~~~~ 242 (353)
T 3h5n_A 197 INDYTDLHK-VPEADIWVVSAD------HPFN-------LINWVNKYCVRANQ-PYINAGY 242 (353)
T ss_dssp CCSGGGGGG-SCCCSEEEECCC------CSTT-------HHHHHHHHHHHTTC-CEEEEEE
T ss_pred cCchhhhhH-hccCCEEEEecC------ChHH-------HHHHHHHHHHHhCC-CEEEEEE
Confidence 766554566 889999998753 1110 11245678888886 4676543
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=95.14 E-value=0.045 Score=53.14 Aligned_cols=76 Identities=12% Similarity=0.129 Sum_probs=50.1
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCC-HHHHHHHhc-
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRH-KAQVLQALQ- 82 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d-~~~l~~~~~- 82 (485)
..+++|||+|++|-+|...++.+...| .+|++++++.... ..... + .-...+..+ .+ .+.+.++..
T Consensus 158 ~~g~~VlV~Gasg~iG~~~~~~a~~~G-a~Vi~~~~~~~~~-------~~~~~-~--ga~~v~~~~-~~~~~~v~~~~~~ 225 (342)
T 4eye_A 158 RAGETVLVLGAAGGIGTAAIQIAKGMG-AKVIAVVNRTAAT-------EFVKS-V--GADIVLPLE-EGWAKAVREATGG 225 (342)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHTT-CEEEEEESSGGGH-------HHHHH-H--TCSEEEESS-TTHHHHHHHHTTT
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHcC-CEEEEEeCCHHHH-------HHHHh-c--CCcEEecCc-hhHHHHHHHHhCC
Confidence 356899999999999999999999999 5899888764321 01111 1 111223333 33 233444443
Q ss_pred -CCCEEEEcCC
Q 047227 83 -GAEVVFHMAA 92 (485)
Q Consensus 83 -~~d~Vih~aa 92 (485)
++|+||++++
T Consensus 226 ~g~Dvvid~~g 236 (342)
T 4eye_A 226 AGVDMVVDPIG 236 (342)
T ss_dssp SCEEEEEESCC
T ss_pred CCceEEEECCc
Confidence 5999999998
|
| >3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=95.11 E-value=0.015 Score=48.71 Aligned_cols=71 Identities=13% Similarity=0.209 Sum_probs=48.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCCCE
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGAEV 86 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~d~ 86 (485)
+++|+|+| +|.+|+.+++.|.+.|. +|++.+|....... +...+ +.... +..+ +.++++++|+
T Consensus 21 ~~~v~iiG-~G~iG~~~a~~l~~~g~-~v~v~~r~~~~~~~-------~a~~~---~~~~~--~~~~---~~~~~~~~Di 83 (144)
T 3oj0_A 21 GNKILLVG-NGMLASEIAPYFSYPQY-KVTVAGRNIDHVRA-------FAEKY---EYEYV--LIND---IDSLIKNNDV 83 (144)
T ss_dssp CCEEEEEC-CSHHHHHHGGGCCTTTC-EEEEEESCHHHHHH-------HHHHH---TCEEE--ECSC---HHHHHHTCSE
T ss_pred CCEEEEEC-CCHHHHHHHHHHHhCCC-EEEEEcCCHHHHHH-------HHHHh---CCceE--eecC---HHHHhcCCCE
Confidence 68999999 59999999999999995 69999887542110 11111 12222 2233 4566788999
Q ss_pred EEEcCCCC
Q 047227 87 VFHMAAPN 94 (485)
Q Consensus 87 Vih~aa~~ 94 (485)
||.+.+..
T Consensus 84 vi~at~~~ 91 (144)
T 3oj0_A 84 IITATSSK 91 (144)
T ss_dssp EEECSCCS
T ss_pred EEEeCCCC
Confidence 99988743
|
| >3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A* | Back alignment and structure |
|---|
Probab=95.01 E-value=0.17 Score=48.71 Aligned_cols=107 Identities=8% Similarity=0.098 Sum_probs=65.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccch------------hhhhhhhc--CCCeEEEEec--
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQ------------GILGEALR--SGRAHYVSFD-- 70 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~------------~~~~~~~~--~~~v~~~~~D-- 70 (485)
+.+|+|.| .|-+|+++++.|...|.-+++++|+..-...+...+. ......+. .+.++....+
T Consensus 34 ~~~VlIvG-aGGlGs~va~~La~aGVg~ItlvD~D~Ve~SNL~RQ~l~~~~diG~~Ka~aaa~~L~~inP~v~v~~~~~~ 112 (340)
T 3rui_A 34 NTKVLLLG-AGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRIFPLMDATGVKLS 112 (340)
T ss_dssp TCEEEEEC-CSHHHHHHHHHHHHTTCCEEEEECCCBCCTTSTTTSTTCCGGGTTSBHHHHHHHHHHHHCTTCEEEEECCC
T ss_pred CCEEEEEC-CCHHHHHHHHHHHHcCCCEEEEecCCEeccccccccccCChhhcChHHHHHHHHHHHHhCCCCEEEEEecc
Confidence 57999998 7899999999999999778999988652211111110 00111111 3555544433
Q ss_pred C--------------CCHHHHHHHhcCCCEEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEe
Q 047227 71 L--------------RHKAQVLQALQGAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYT 129 (485)
Q Consensus 71 l--------------~d~~~l~~~~~~~d~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~ 129 (485)
+ .+.+.+.++++++|+||++.. +++.- ..+-++|.+.++ .+|..
T Consensus 113 i~~~g~~~~~~~~~~~~~~~l~~~l~~~DlVvd~tD------n~~tR--------~lin~~c~~~~~-plI~a 170 (340)
T 3rui_A 113 IPMIGHKLVNEEAQHKDFDRLRALIKEHDIIFLLVD------SRESR--------WLPSLLSNIENK-TVINA 170 (340)
T ss_dssp CCCTTSCCSCHHHHHHHHHHHHHHHHHCSEEEECCS------STGGG--------HHHHHHHHHTTC-EEEEE
T ss_pred ccccCcccchhhhhcCCHHHHHhhhccCCEEEecCC------CHHHH--------HHHHHHHHHcCC-cEEEe
Confidence 3 134456778889999998764 22211 245678888875 45543
|
| >3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A | Back alignment and structure |
|---|
Probab=94.99 E-value=0.023 Score=53.69 Aligned_cols=77 Identities=22% Similarity=0.295 Sum_probs=49.3
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhc--CCCeEEEEecCCCHHHHHHHhc
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALR--SGRAHYVSFDLRHKAQVLQALQ 82 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~Dl~d~~~l~~~~~ 82 (485)
..+++++|+|+ |-+|+.++..|.+.|..+|++++|...+... +...+. .+.+.....+..+ +.+.++
T Consensus 125 l~~k~vlVlGa-GG~g~aia~~L~~~G~~~v~i~~R~~~~a~~-------la~~~~~~~~~~~i~~~~~~~---l~~~l~ 193 (283)
T 3jyo_A 125 AKLDSVVQVGA-GGVGNAVAYALVTHGVQKLQVADLDTSRAQA-------LADVINNAVGREAVVGVDARG---IEDVIA 193 (283)
T ss_dssp CCCSEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSSHHHHHH-------HHHHHHHHHTSCCEEEECSTT---HHHHHH
T ss_pred cCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEECCHHHHHH-------HHHHHHhhcCCceEEEcCHHH---HHHHHh
Confidence 35689999996 8999999999999994479999887542211 111111 1123333344333 445566
Q ss_pred CCCEEEEcCC
Q 047227 83 GAEVVFHMAA 92 (485)
Q Consensus 83 ~~d~Vih~aa 92 (485)
++|.||++..
T Consensus 194 ~~DiVInaTp 203 (283)
T 3jyo_A 194 AADGVVNATP 203 (283)
T ss_dssp HSSEEEECSS
T ss_pred cCCEEEECCC
Confidence 7888887765
|
| >2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=94.96 E-value=0.1 Score=49.90 Aligned_cols=111 Identities=11% Similarity=0.088 Sum_probs=71.6
Q ss_pred EEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhh--hcCCCeEEEE-ecCCCHHHHHHHhcCCC
Q 047227 9 LCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEA--LRSGRAHYVS-FDLRHKAQVLQALQGAE 85 (485)
Q Consensus 9 ~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~--~~~~~v~~~~-~Dl~d~~~l~~~~~~~d 85 (485)
||.|+|+ |.+|..++..|...|..+|.++|+....... .... +.+. ......+... .| . ++++++|
T Consensus 1 KI~IiGa-G~vG~~~a~~l~~~~l~el~L~Di~~~~~~g--~~~d-l~~~~~~~~~~~~i~~t~d------~-~a~~~aD 69 (308)
T 2d4a_B 1 MITILGA-GKVGMATAVMLMMRGYDDLLLIARTPGKPQG--EALD-LAHAAAELGVDIRISGSNS------Y-EDMRGSD 69 (308)
T ss_dssp CEEEECC-SHHHHHHHHHHHHHTCSCEEEECSSTTHHHH--HHHH-HHHHHHHHTCCCCEEEESC------G-GGGTTCS
T ss_pred CEEEECc-CHHHHHHHHHHHhCCCCEEEEEcCChhhHHH--HHHH-HHHhhhhcCCCeEEEECCC------H-HHhCCCC
Confidence 5889997 9999999999988885369999986432210 0001 1111 0112333333 33 2 3688999
Q ss_pred EEEEcCCCCC-CCCchhhhHHHHHHHHHHHHHHHHhcCCC-EEEEec
Q 047227 86 VVFHMAAPNS-SINNHKLHHSVNVEGTKNVIDACAELKVK-RLIYTS 130 (485)
Q Consensus 86 ~Vih~aa~~~-~~~~~~~~~~~nv~~t~~ll~a~~~~~v~-r~V~~S 130 (485)
+||-.++... ...........|+.-.+.+++.+.+.... .++.+|
T Consensus 70 ~Vi~~ag~~~k~G~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~t 116 (308)
T 2d4a_B 70 IVLVTAGIGRKPGMTREQLLEANANTMADLAEKIKAYAKDAIVVITT 116 (308)
T ss_dssp EEEECCSCCCCSSCCTHHHHHHHHHHHHHHHHHHHHHCTTCEEEECC
T ss_pred EEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 9999998432 33345566888999999999999887643 555554
|
| >3uw3_A Aspartate-semialdehyde dehydrogenase; structural genomics, seattle structural genomics center for infectious disease (ssgcid); 1.55A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=94.95 E-value=0.14 Score=50.23 Aligned_cols=95 Identities=15% Similarity=0.096 Sum_probs=54.2
Q ss_pred CCEEEEEcCCCchHHHHHH-HHHhcCC--ceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcC
Q 047227 7 ERLCVVTGGRGFAARHLVE-MLIRYDM--FSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQG 83 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~-~Ll~~G~--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~ 83 (485)
.++|.|.|+||++|..+++ .|.++.. .++..+... +.. ..... +.... ...-|..+.+. +++
T Consensus 4 ~~~VaIvGATG~vG~ellr~lL~~hp~~~~~l~~~ss~-~aG-~~~~~-------~~~~~--~~v~~~~~~~~----~~~ 68 (377)
T 3uw3_A 4 SMNVGLVGWRGMVGSVLMQRMQEEGDFDLIEPVFFSTS-NAG-GKAPS-------FAKNE--TTLKDATSIDD----LKK 68 (377)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESS-CTT-SBCCT-------TCCSC--CBCEETTCHHH----HHT
T ss_pred CCEEEEECCCCHHHHHHHHHHHhhCCCCceEEEEEech-hcC-CCHHH-------cCCCc--eEEEeCCChhH----hcC
Confidence 4799999999999999999 6666652 255554332 111 00000 11111 11224445443 468
Q ss_pred CCEEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCC-EEEEecC
Q 047227 84 AEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVK-RLIYTSS 131 (485)
Q Consensus 84 ~d~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~-r~V~~SS 131 (485)
+|+||-+.+. ..++.....+.+.|++ ++|=.|+
T Consensus 69 vDvvf~a~~~---------------~~s~~~~~~~~~~G~k~~VID~ss 102 (377)
T 3uw3_A 69 CDVIITCQGG---------------DYTNDVFPKLRAAGWNGYWIDAAS 102 (377)
T ss_dssp CSEEEECSCH---------------HHHHHHHHHHHHTTCCSEEEECSS
T ss_pred CCEEEECCCh---------------HHHHHHHHHHHHCCCCEEEEeCCc
Confidence 9999988761 1234566666778874 5555554
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=94.90 E-value=0.019 Score=56.64 Aligned_cols=76 Identities=17% Similarity=0.152 Sum_probs=53.3
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCC
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGA 84 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 84 (485)
..+++|+|+|+ |-+|..+++.+...| .+|+++++...... .....+ ...+ ..+..+.+.+.++++++
T Consensus 166 l~g~~V~ViG~-G~iG~~~a~~a~~~G-a~V~~~d~~~~~l~-------~~~~~~-g~~~---~~~~~~~~~l~~~l~~a 232 (377)
T 2vhw_A 166 VEPADVVVIGA-GTAGYNAARIANGMG-ATVTVLDINIDKLR-------QLDAEF-CGRI---HTRYSSAYELEGAVKRA 232 (377)
T ss_dssp BCCCEEEEECC-SHHHHHHHHHHHHTT-CEEEEEESCHHHHH-------HHHHHT-TTSS---EEEECCHHHHHHHHHHC
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCC-CEEEEEeCCHHHHH-------HHHHhc-CCee---EeccCCHHHHHHHHcCC
Confidence 35789999997 999999999999999 49999998754210 011111 1111 22334566788888899
Q ss_pred CEEEEcCCC
Q 047227 85 EVVFHMAAP 93 (485)
Q Consensus 85 d~Vih~aa~ 93 (485)
|+||.+++.
T Consensus 233 DvVi~~~~~ 241 (377)
T 2vhw_A 233 DLVIGAVLV 241 (377)
T ss_dssp SEEEECCCC
T ss_pred CEEEECCCc
Confidence 999998873
|
| >3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=94.88 E-value=0.081 Score=49.77 Aligned_cols=95 Identities=14% Similarity=0.083 Sum_probs=54.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCce-EEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCCC
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFS-VRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGAE 85 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~d 85 (485)
++||.|.|++|-+|+.+++.+.+....+ |-++++..+........ -+.. ....++... +++++++.++|
T Consensus 21 ~irV~V~Ga~GrMGr~i~~~v~~~~~~eLvg~vd~~~~~~~G~d~g--el~G-~~~~gv~v~-------~dl~~ll~~aD 90 (288)
T 3ijp_A 21 SMRLTVVGANGRMGRELITAIQRRKDVELCAVLVRKGSSFVDKDAS--ILIG-SDFLGVRIT-------DDPESAFSNTE 90 (288)
T ss_dssp CEEEEESSTTSHHHHHHHHHHHTCSSEEEEEEBCCTTCTTTTSBGG--GGTT-CSCCSCBCB-------SCHHHHTTSCS
T ss_pred CeEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccchH--Hhhc-cCcCCceee-------CCHHHHhcCCC
Confidence 4699999999999999999998764345 44446643211100000 0000 001122211 13556677899
Q ss_pred EEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEE
Q 047227 86 VVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLI 127 (485)
Q Consensus 86 ~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V 127 (485)
+||++.. | ..+...++.|.+.|+ .+|
T Consensus 91 VvIDFT~-------p--------~a~~~~~~~~l~~Gv-~vV 116 (288)
T 3ijp_A 91 GILDFSQ-------P--------QASVLYANYAAQKSL-IHI 116 (288)
T ss_dssp EEEECSC-------H--------HHHHHHHHHHHHHTC-EEE
T ss_pred EEEEcCC-------H--------HHHHHHHHHHHHcCC-CEE
Confidence 9998863 2 223456677777876 444
|
| >2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* | Back alignment and structure |
|---|
Probab=94.87 E-value=0.02 Score=56.23 Aligned_cols=70 Identities=13% Similarity=0.245 Sum_probs=47.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCC---ccccCCccchhhhhhhhcCCCeEEEEecCCC--HHHHHHHh
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSD---SIALEPHEEQGILGEALRSGRAHYVSFDLRH--KAQVLQAL 81 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d--~~~l~~~~ 81 (485)
+++|||+|+ |-+|..+++.+...| .+|++++++. ... .+.. .-++..+ | .+ .+.+.+.-
T Consensus 181 g~~VlV~Ga-G~vG~~~~q~a~~~G-a~Vi~~~~~~~~~~~~-------~~~~----~~ga~~v--~-~~~~~~~~~~~~ 244 (366)
T 2cdc_A 181 CRKVLVVGT-GPIGVLFTLLFRTYG-LEVWMANRREPTEVEQ-------TVIE----ETKTNYY--N-SSNGYDKLKDSV 244 (366)
T ss_dssp TCEEEEESC-HHHHHHHHHHHHHHT-CEEEEEESSCCCHHHH-------HHHH----HHTCEEE--E-CTTCSHHHHHHH
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCC-CEEEEEeCCccchHHH-------HHHH----HhCCcee--c-hHHHHHHHHHhC
Confidence 789999999 999999999999999 5999998765 210 0111 1234444 5 44 12333311
Q ss_pred cCCCEEEEcCC
Q 047227 82 QGAEVVFHMAA 92 (485)
Q Consensus 82 ~~~d~Vih~aa 92 (485)
.++|+||++++
T Consensus 245 ~~~d~vid~~g 255 (366)
T 2cdc_A 245 GKFDVIIDATG 255 (366)
T ss_dssp CCEEEEEECCC
T ss_pred CCCCEEEECCC
Confidence 56999999997
|
| >3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=94.86 E-value=0.019 Score=55.00 Aligned_cols=72 Identities=24% Similarity=0.212 Sum_probs=48.7
Q ss_pred CCCCCCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHH
Q 047227 1 MSGEENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQA 80 (485)
Q Consensus 1 M~~~~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~ 80 (485)
|+...++|+|.|.| .|.+|..+++.|.+.| ++|++.+|++... .. +...++.. ..+ ..++
T Consensus 3 m~~~~~~~~IgiIG-~G~mG~~~A~~l~~~G-~~V~~~dr~~~~~----------~~-~~~~g~~~----~~~---~~e~ 62 (306)
T 3l6d_A 3 LSDESFEFDVSVIG-LGAMGTIMAQVLLKQG-KRVAIWNRSPGKA----------AA-LVAAGAHL----CES---VKAA 62 (306)
T ss_dssp CCCCCCSCSEEEEC-CSHHHHHHHHHHHHTT-CCEEEECSSHHHH----------HH-HHHHTCEE----CSS---HHHH
T ss_pred CCcccCCCeEEEEC-CCHHHHHHHHHHHHCC-CEEEEEeCCHHHH----------HH-HHHCCCee----cCC---HHHH
Confidence 44445568999997 8999999999999999 5899998875421 11 11112221 123 4556
Q ss_pred hcCCCEEEEcCC
Q 047227 81 LQGAEVVFHMAA 92 (485)
Q Consensus 81 ~~~~d~Vih~aa 92 (485)
++++|+||-+..
T Consensus 63 ~~~aDvVi~~vp 74 (306)
T 3l6d_A 63 LSASPATIFVLL 74 (306)
T ss_dssp HHHSSEEEECCS
T ss_pred HhcCCEEEEEeC
Confidence 677999997764
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.82 E-value=0.12 Score=50.27 Aligned_cols=74 Identities=12% Similarity=0.074 Sum_probs=48.2
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCC----CHHHHHHH
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLR----HKAQVLQA 80 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~----d~~~l~~~ 80 (485)
..+.+|||+|+ |-+|...++.+...| .+|.++++++... .+.. .-++..+ .|.+ ..+++.+.
T Consensus 167 ~~g~~VlV~Ga-G~vG~~a~qla~~~G-a~Vi~~~~~~~~~-------~~~~----~lGa~~~-~~~~~~~~~~~~i~~~ 232 (352)
T 1e3j_A 167 QLGTTVLVIGA-GPIGLVSVLAAKAYG-AFVVCTARSPRRL-------EVAK----NCGADVT-LVVDPAKEEESSIIER 232 (352)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTT-CEEEEEESCHHHH-------HHHH----HTTCSEE-EECCTTTSCHHHHHHH
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHcC-CEEEEEcCCHHHH-------HHHH----HhCCCEE-EcCcccccHHHHHHHH
Confidence 34679999996 999999999999899 5788887664311 0111 1122221 2333 24456655
Q ss_pred hc-----CCCEEEEcCC
Q 047227 81 LQ-----GAEVVFHMAA 92 (485)
Q Consensus 81 ~~-----~~d~Vih~aa 92 (485)
.. ++|+||++++
T Consensus 233 ~~~~~g~g~D~vid~~g 249 (352)
T 1e3j_A 233 IRSAIGDLPNVTIDCSG 249 (352)
T ss_dssp HHHHSSSCCSEEEECSC
T ss_pred hccccCCCCCEEEECCC
Confidence 53 6999999987
|
| >2yv3_A Aspartate-semialdehyde dehydrogenase; aspartate pathway, structural genomics; 2.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=94.78 E-value=0.065 Score=51.73 Aligned_cols=26 Identities=19% Similarity=0.294 Sum_probs=23.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCc
Q 047227 8 RLCVVTGGRGFAARHLVEMLIRYDMF 33 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~~G~~ 33 (485)
|||.|.|++|++|+.+++.|.+++|.
T Consensus 1 mkVaI~GAtG~iG~~llr~L~~~~~~ 26 (331)
T 2yv3_A 1 MRVAVVGATGAVGREILKVLEARNFP 26 (331)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTCC
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCC
Confidence 57999999999999999999977754
|
| >2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=94.78 E-value=0.015 Score=55.49 Aligned_cols=35 Identities=20% Similarity=0.135 Sum_probs=30.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCc
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDS 43 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~ 43 (485)
+|+|.|.| .|.+|+.++..|.+.| ++|++++|.+.
T Consensus 3 ~m~i~iiG-~G~~G~~~a~~l~~~g-~~V~~~~r~~~ 37 (316)
T 2ew2_A 3 AMKIAIAG-AGAMGSRLGIMLHQGG-NDVTLIDQWPA 37 (316)
T ss_dssp -CEEEEEC-CSHHHHHHHHHHHHTT-CEEEEECSCHH
T ss_pred CCeEEEEC-cCHHHHHHHHHHHhCC-CcEEEEECCHH
Confidence 57999998 5999999999999999 59999988653
|
| >3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} | Back alignment and structure |
|---|
Probab=94.75 E-value=0.03 Score=52.89 Aligned_cols=36 Identities=6% Similarity=0.162 Sum_probs=31.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCc
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDS 43 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~ 43 (485)
+|+|.|.|+||.+|+.++..|.+.| ++|++.+|.+.
T Consensus 11 mm~I~iIG~tG~mG~~la~~l~~~g-~~V~~~~r~~~ 46 (286)
T 3c24_A 11 PKTVAILGAGGKMGARITRKIHDSA-HHLAAIEIAPE 46 (286)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHSS-SEEEEECCSHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCC-CEEEEEECCHH
Confidence 4799999988999999999999999 58999988643
|
| >4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=94.71 E-value=0.063 Score=51.59 Aligned_cols=67 Identities=18% Similarity=0.187 Sum_probs=47.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCCC
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGAE 85 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~d 85 (485)
.+|+|.|.| .|.+|..++..|.+.| ++|++.+|.+... ..+...++... . ++.++++++|
T Consensus 30 ~~~~I~iIG-~G~mG~~~a~~l~~~G-~~V~~~dr~~~~~-----------~~l~~~g~~~~----~---~~~e~~~~aD 89 (320)
T 4dll_A 30 YARKITFLG-TGSMGLPMARRLCEAG-YALQVWNRTPARA-----------ASLAALGATIH----E---QARAAARDAD 89 (320)
T ss_dssp CCSEEEEEC-CTTTHHHHHHHHHHTT-CEEEEECSCHHHH-----------HHHHTTTCEEE----S---SHHHHHTTCS
T ss_pred CCCEEEEEC-ccHHHHHHHHHHHhCC-CeEEEEcCCHHHH-----------HHHHHCCCEee----C---CHHHHHhcCC
Confidence 457999997 7999999999999999 5999999875421 11222233321 1 3556778899
Q ss_pred EEEEcCC
Q 047227 86 VVFHMAA 92 (485)
Q Consensus 86 ~Vih~aa 92 (485)
+||-+..
T Consensus 90 vVi~~vp 96 (320)
T 4dll_A 90 IVVSMLE 96 (320)
T ss_dssp EEEECCS
T ss_pred EEEEECC
Confidence 9997664
|
| >3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=94.67 E-value=0.078 Score=49.56 Aligned_cols=55 Identities=15% Similarity=0.263 Sum_probs=45.9
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCC
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGA 84 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 84 (485)
..+++++|+|.+|.+|+.++..|+++| .+|++.++.. ..+.+.++.+
T Consensus 158 l~Gk~vvVvGrs~iVG~p~A~lL~~~g-AtVtv~h~~t--------------------------------~~L~~~~~~A 204 (285)
T 3p2o_A 158 LEGKDAVIIGASNIVGRPMATMLLNAG-ATVSVCHIKT--------------------------------KDLSLYTRQA 204 (285)
T ss_dssp CTTCEEEEECCCTTTHHHHHHHHHHTT-CEEEEECTTC--------------------------------SCHHHHHTTC
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCC-CeEEEEeCCc--------------------------------hhHHHHhhcC
Confidence 467999999999999999999999999 6898876431 1256778899
Q ss_pred CEEEEcCC
Q 047227 85 EVVFHMAA 92 (485)
Q Consensus 85 d~Vih~aa 92 (485)
|+||...+
T Consensus 205 DIVI~Avg 212 (285)
T 3p2o_A 205 DLIIVAAG 212 (285)
T ss_dssp SEEEECSS
T ss_pred CEEEECCC
Confidence 99998887
|
| >2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A* | Back alignment and structure |
|---|
Probab=94.66 E-value=0.052 Score=45.58 Aligned_cols=85 Identities=14% Similarity=0.073 Sum_probs=53.1
Q ss_pred CCEEEEEcCC---CchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcC
Q 047227 7 ERLCVVTGGR---GFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQG 83 (485)
Q Consensus 7 ~~~iLVtGgt---G~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~ 83 (485)
.++|.|.|++ |.+|..+++.|.+.| ++|..++.... + -.++.. ..+ +.++-+.
T Consensus 22 p~~iaVVGas~~~g~~G~~~~~~l~~~G-~~v~~Vnp~~~-------~---------i~G~~~-y~s------l~~l~~~ 77 (144)
T 2d59_A 22 YKKIALVGASPKPERDANIVMKYLLEHG-YDVYPVNPKYE-------E---------VLGRKC-YPS------VLDIPDK 77 (144)
T ss_dssp CCEEEEETCCSCTTSHHHHHHHHHHHTT-CEEEEECTTCS-------E---------ETTEEC-BSS------GGGCSSC
T ss_pred CCEEEEEccCCCCCchHHHHHHHHHHCC-CEEEEECCCCC-------e---------ECCeec-cCC------HHHcCCC
Confidence 5789999998 899999999999999 57655533211 0 012221 112 2223346
Q ss_pred CCEEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEec
Q 047227 84 AEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTS 130 (485)
Q Consensus 84 ~d~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~S 130 (485)
+|.++-+.. ......+++.|.+.|++.+++.+
T Consensus 78 vDlvvi~vp---------------~~~~~~vv~~~~~~gi~~i~~~~ 109 (144)
T 2d59_A 78 IEVVDLFVK---------------PKLTMEYVEQAIKKGAKVVWFQY 109 (144)
T ss_dssp CSEEEECSC---------------HHHHHHHHHHHHHHTCSEEEECT
T ss_pred CCEEEEEeC---------------HHHHHHHHHHHHHcCCCEEEECC
Confidence 888875542 13334677888888888776543
|
| >3hsk_A Aspartate-semialdehyde dehydrogenase; candida albicans NADP complex, amino-acid biosynthesis; HET: NAP; 2.20A {Candida albicans} | Back alignment and structure |
|---|
Probab=94.64 E-value=0.017 Score=56.89 Aligned_cols=34 Identities=15% Similarity=0.240 Sum_probs=27.1
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEe
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIA 38 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~ 38 (485)
|+++||.|.|+||++|..+++.|.++...++..+
T Consensus 17 M~~~kVaIvGAtG~vG~ell~lL~~hp~~el~~l 50 (381)
T 3hsk_A 17 MSVKKAGVLGATGSVGQRFILLLSKHPEFEIHAL 50 (381)
T ss_dssp -CCEEEEEETTTSHHHHHHHHHHTTCSSEEEEEE
T ss_pred CCccEEEEECCCChHHHHHHHHHHcCCCceEEEe
Confidence 3457899999999999999998888764566544
|
| >3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A* | Back alignment and structure |
|---|
Probab=94.63 E-value=0.12 Score=51.65 Aligned_cols=36 Identities=11% Similarity=0.201 Sum_probs=30.6
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCc
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDS 43 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~ 43 (485)
..+|+|.|.| +|++|..++..|.+ | ++|+++|+.+.
T Consensus 34 ~~~mkIaVIG-lG~mG~~lA~~La~-G-~~V~~~D~~~~ 69 (432)
T 3pid_A 34 SEFMKITISG-TGYVGLSNGVLIAQ-N-HEVVALDIVQA 69 (432)
T ss_dssp -CCCEEEEEC-CSHHHHHHHHHHHT-T-SEEEEECSCHH
T ss_pred cCCCEEEEEC-cCHHHHHHHHHHHc-C-CeEEEEecCHH
Confidence 4568999998 89999999998887 8 69999998765
|
| >3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=94.63 E-value=0.022 Score=52.39 Aligned_cols=34 Identities=6% Similarity=0.013 Sum_probs=28.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEE-eecCC
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRI-ADLSD 42 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~-~~r~~ 42 (485)
||||.|+|+ |.+|+.+++.+.++++ ++.. +++..
T Consensus 3 MmkI~ViGa-GrMG~~i~~~l~~~~~-eLva~~d~~~ 37 (243)
T 3qy9_A 3 SMKILLIGY-GAMNQRVARLAEEKGH-EIVGVIENTP 37 (243)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTC-EEEEEECSSC
T ss_pred ceEEEEECc-CHHHHHHHHHHHhCCC-EEEEEEecCc
Confidence 689999999 9999999999999986 6554 56654
|
| >3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A* | Back alignment and structure |
|---|
Probab=94.62 E-value=0.17 Score=48.09 Aligned_cols=103 Identities=14% Similarity=0.130 Sum_probs=64.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccc----hhhhhhhhcCCCeEEEEecCCCHHHHHHHhc
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEE----QGILGEALRSGRAHYVSFDLRHKAQVLQALQ 82 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~----~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~ 82 (485)
|+||-++| .|..|..+++.|++.| +.|++.||.+......... .....+. ....+.+..=+.|.+++++++.
T Consensus 3 M~kIgfIG-lG~MG~~mA~~L~~~G-~~v~v~dr~~~~~~~l~~~Ga~~a~s~~e~--~~~~dvv~~~l~~~~~v~~V~~ 78 (300)
T 3obb_A 3 MKQIAFIG-LGHMGAPMATNLLKAG-YLLNVFDLVQSAVDGLVAAGASAARSARDA--VQGADVVISMLPASQHVEGLYL 78 (300)
T ss_dssp CCEEEEEC-CSTTHHHHHHHHHHTT-CEEEEECSSHHHHHHHHHTTCEECSSHHHH--HTTCSEEEECCSCHHHHHHHHH
T ss_pred cCEEEEee-ehHHHHHHHHHHHhCC-CeEEEEcCCHHHHHHHHHcCCEEcCCHHHH--HhcCCceeecCCchHHHHHHHh
Confidence 57899998 9999999999999999 5999999986532111000 0001111 1234555566677777777764
Q ss_pred CC----------CEEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEE
Q 047227 83 GA----------EVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLI 127 (485)
Q Consensus 83 ~~----------d~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V 127 (485)
+. ++||++.. +....++.+.+.+++.|+ +|+
T Consensus 79 ~~~g~~~~~~~g~iiId~sT-------------~~p~~~~~~a~~~~~~G~-~~l 119 (300)
T 3obb_A 79 DDDGLLAHIAPGTLVLECST-------------IAPTSARKIHAAARERGL-AML 119 (300)
T ss_dssp SSSSSTTSCCC-CEEEECSC-------------CCHHHHHHHHHHHHTTTC-EEE
T ss_pred chhhhhhcCCCCCEEEECCC-------------CCHHHHHHHHHHHHHcCC-EEE
Confidence 32 45665542 223345667778887775 454
|
| >2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=94.59 E-value=0.058 Score=51.29 Aligned_cols=54 Identities=24% Similarity=0.254 Sum_probs=43.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCCCE
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGAEV 86 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~d~ 86 (485)
+++|.|.||.|.+|..++..|.+.| ++|++.++.+. ....++++++|+
T Consensus 21 ~~~I~iIGg~G~mG~~la~~l~~~G-~~V~~~~~~~~-------------------------------~~~~~~~~~aDv 68 (298)
T 2pv7_A 21 IHKIVIVGGYGKLGGLFARYLRASG-YPISILDREDW-------------------------------AVAESILANADV 68 (298)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHTTT-CCEEEECTTCG-------------------------------GGHHHHHTTCSE
T ss_pred CCEEEEEcCCCHHHHHHHHHHHhCC-CeEEEEECCcc-------------------------------cCHHHHhcCCCE
Confidence 4589999999999999999999999 58998876532 024456788999
Q ss_pred EEEcCC
Q 047227 87 VFHMAA 92 (485)
Q Consensus 87 Vih~aa 92 (485)
||-+..
T Consensus 69 Vilavp 74 (298)
T 2pv7_A 69 VIVSVP 74 (298)
T ss_dssp EEECSC
T ss_pred EEEeCC
Confidence 997764
|
| >1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A* | Back alignment and structure |
|---|
Probab=94.58 E-value=0.09 Score=50.19 Aligned_cols=81 Identities=15% Similarity=0.191 Sum_probs=54.5
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCC
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGA 84 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 84 (485)
..+++++|.|++..+|+.+++.|+..| ..|++.+|........... +.............+++++.+.++++
T Consensus 175 l~gk~vvVIG~G~iVG~~~A~~L~~~g-AtVtv~nR~~~~l~~ra~~-------la~~~~~~t~~~~t~~~~L~e~l~~A 246 (320)
T 1edz_A 175 LYGKKCIVINRSEIVGRPLAALLANDG-ATVYSVDVNNIQKFTRGES-------LKLNKHHVEDLGEYSEDLLKKCSLDS 246 (320)
T ss_dssp TTTCEEEEECCCTTTHHHHHHHHHTTS-CEEEEECSSEEEEEESCCC-------SSCCCCEEEEEEECCHHHHHHHHHHC
T ss_pred CCCCEEEEECCCcchHHHHHHHHHHCC-CEEEEEeCchHHHHhHHHH-------HhhhcccccccccccHhHHHHHhccC
Confidence 467899999988889999999999999 6899998864322222111 10100111111113456789999999
Q ss_pred CEEEEcCCC
Q 047227 85 EVVFHMAAP 93 (485)
Q Consensus 85 d~Vih~aa~ 93 (485)
|+||-..+.
T Consensus 247 DIVIsAtg~ 255 (320)
T 1edz_A 247 DVVITGVPS 255 (320)
T ss_dssp SEEEECCCC
T ss_pred CEEEECCCC
Confidence 999988874
|
| >3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str} | Back alignment and structure |
|---|
Probab=94.58 E-value=0.052 Score=53.17 Aligned_cols=74 Identities=18% Similarity=0.244 Sum_probs=51.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecC--------------
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDL-------------- 71 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl-------------- 71 (485)
.+.+|+|+|+ |-+|...++.|...| .+|+++|+..... .. ...-+.+++..|.
T Consensus 183 ~~~kV~ViG~-G~iG~~aa~~a~~lG-a~V~v~D~~~~~l----------~~-~~~lGa~~~~l~~~~~~~~gya~~~~~ 249 (381)
T 3p2y_A 183 KPASALVLGV-GVAGLQALATAKRLG-AKTTGYDVRPEVA----------EQ-VRSVGAQWLDLGIDAAGEGGYARELSE 249 (381)
T ss_dssp CCCEEEEESC-SHHHHHHHHHHHHHT-CEEEEECSSGGGH----------HH-HHHTTCEECCCC-------------CH
T ss_pred CCCEEEEECc-hHHHHHHHHHHHHCC-CEEEEEeCCHHHH----------HH-HHHcCCeEEeccccccccccchhhhhH
Confidence 4679999995 999999999999999 5899999875421 11 1112333332211
Q ss_pred ----CCHHHHHHHhcCCCEEEEcCC
Q 047227 72 ----RHKAQVLQALQGAEVVFHMAA 92 (485)
Q Consensus 72 ----~d~~~l~~~~~~~d~Vih~aa 92 (485)
.+.+.+.++++++|+||.++.
T Consensus 250 ~~~~~~~~~l~e~l~~aDIVI~tv~ 274 (381)
T 3p2y_A 250 AERAQQQQALEDAITKFDIVITTAL 274 (381)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEECCC
T ss_pred HHHhhhHHHHHHHHhcCCEEEECCC
Confidence 124567888899999998865
|
| >3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=94.48 E-value=0.16 Score=51.22 Aligned_cols=34 Identities=18% Similarity=0.164 Sum_probs=30.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCc
Q 047227 8 RLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDS 43 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~ 43 (485)
|+|.|.| +|++|..++..|.+.| ++|+++|+.+.
T Consensus 3 mkI~VIG-~G~vG~~lA~~La~~G-~~V~~~D~~~~ 36 (450)
T 3gg2_A 3 LDIAVVG-IGYVGLVSATCFAELG-ANVRCIDTDRN 36 (450)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHTT-CEEEEECSCHH
T ss_pred CEEEEEC-cCHHHHHHHHHHHhcC-CEEEEEECCHH
Confidence 7999997 7999999999999999 59999998754
|
| >4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=94.47 E-value=0.22 Score=47.18 Aligned_cols=36 Identities=17% Similarity=0.228 Sum_probs=27.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccc
Q 047227 8 RLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIA 45 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~ 45 (485)
+||-++| .|..|..+++.|++.| ++|++.||++...
T Consensus 6 ~kIgfIG-LG~MG~~mA~~L~~~G-~~V~v~dr~~~~~ 41 (297)
T 4gbj_A 6 EKIAFLG-LGNLGTPIAEILLEAG-YELVVWNRTASKA 41 (297)
T ss_dssp CEEEEEC-CSTTHHHHHHHHHHTT-CEEEEC-------
T ss_pred CcEEEEe-cHHHHHHHHHHHHHCC-CeEEEEeCCHHHH
Confidence 5899997 9999999999999999 5999999987643
|
| >3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=94.47 E-value=0.034 Score=54.03 Aligned_cols=74 Identities=12% Similarity=0.161 Sum_probs=47.6
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCC-HHHHHHHhc-
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRH-KAQVLQALQ- 82 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d-~~~l~~~~~- 82 (485)
..+.+|||+||+|-+|...++.+...| .+|+++ ++... ..+... -++..+. +-.+ .+.+.++..
T Consensus 149 ~~g~~VlV~Ga~g~iG~~~~q~a~~~G-a~Vi~~-~~~~~-------~~~~~~----lGa~~i~-~~~~~~~~~~~~~~~ 214 (343)
T 3gaz_A 149 QDGQTVLIQGGGGGVGHVAIQIALARG-ARVFAT-ARGSD-------LEYVRD----LGATPID-ASREPEDYAAEHTAG 214 (343)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEE-ECHHH-------HHHHHH----HTSEEEE-TTSCHHHHHHHHHTT
T ss_pred CCCCEEEEecCCCHHHHHHHHHHHHCC-CEEEEE-eCHHH-------HHHHHH----cCCCEec-cCCCHHHHHHHHhcC
Confidence 356899999999999999999999999 588877 43221 011111 2334432 2223 233444443
Q ss_pred -CCCEEEEcCC
Q 047227 83 -GAEVVFHMAA 92 (485)
Q Consensus 83 -~~d~Vih~aa 92 (485)
++|+||++++
T Consensus 215 ~g~D~vid~~g 225 (343)
T 3gaz_A 215 QGFDLVYDTLG 225 (343)
T ss_dssp SCEEEEEESSC
T ss_pred CCceEEEECCC
Confidence 5999999987
|
| >4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=94.46 E-value=0.087 Score=52.05 Aligned_cols=74 Identities=18% Similarity=0.236 Sum_probs=51.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEec---------------
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFD--------------- 70 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D--------------- 70 (485)
.+.+|+|+|+ |-+|...++.+...| .+|+++|+..... .. ...-+.+++..+
T Consensus 189 ~~~kV~ViG~-G~iG~~aa~~a~~lG-a~V~v~D~~~~~l----------~~-~~~~G~~~~~~~~~~~~d~~~~~~ya~ 255 (405)
T 4dio_A 189 PAAKIFVMGA-GVAGLQAIATARRLG-AVVSATDVRPAAK----------EQ-VASLGAKFIAVEDEEFKAAETAGGYAK 255 (405)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHTT-CEEEEECSSTTHH----------HH-HHHTTCEECCCCC--------------
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHCC-CEEEEEcCCHHHH----------HH-HHHcCCceeecccccccccccccchhh
Confidence 4579999995 999999999999999 5999999876421 00 011122332221
Q ss_pred -CCC------HHHHHHHhcCCCEEEEcCC
Q 047227 71 -LRH------KAQVLQALQGAEVVFHMAA 92 (485)
Q Consensus 71 -l~d------~~~l~~~~~~~d~Vih~aa 92 (485)
+++ .+.+.++++++|+||.++.
T Consensus 256 e~s~~~~~~~~~~l~e~l~~aDVVI~tvl 284 (405)
T 4dio_A 256 EMSGEYQVKQAALVAEHIAKQDIVITTAL 284 (405)
T ss_dssp ---CHHHHHHHHHHHHHHHTCSEEEECCC
T ss_pred hcchhhhhhhHhHHHHHhcCCCEEEECCc
Confidence 222 3578888999999999876
|
| >2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.45 E-value=0.14 Score=50.31 Aligned_cols=74 Identities=12% Similarity=0.142 Sum_probs=47.4
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHh--c
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQAL--Q 82 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~--~ 82 (485)
..+.+|||+||+|-+|...++.+...| .+|+++++... ..+.. .-++..+ .|..+.+...++. .
T Consensus 182 ~~g~~VlV~Ga~G~vG~~~~qla~~~G-a~Vi~~~~~~~--------~~~~~----~lGa~~v-~~~~~~~~~~~~~~~~ 247 (375)
T 2vn8_A 182 CTGKRVLILGASGGVGTFAIQVMKAWD-AHVTAVCSQDA--------SELVR----KLGADDV-IDYKSGSVEEQLKSLK 247 (375)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECGGG--------HHHHH----HTTCSEE-EETTSSCHHHHHHTSC
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHhCC-CEEEEEeChHH--------HHHHH----HcCCCEE-EECCchHHHHHHhhcC
Confidence 456899999999999999999999999 58887763211 01111 1123322 2444432222232 4
Q ss_pred CCCEEEEcCC
Q 047227 83 GAEVVFHMAA 92 (485)
Q Consensus 83 ~~d~Vih~aa 92 (485)
++|+||++++
T Consensus 248 g~D~vid~~g 257 (375)
T 2vn8_A 248 PFDFILDNVG 257 (375)
T ss_dssp CBSEEEESSC
T ss_pred CCCEEEECCC
Confidence 7999999987
|
| >1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A | Back alignment and structure |
|---|
Probab=94.37 E-value=0.15 Score=53.42 Aligned_cols=111 Identities=14% Similarity=0.128 Sum_probs=67.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccch------------hhhhhhh----cCCCeEEEEec
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQ------------GILGEAL----RSGRAHYVSFD 70 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~------------~~~~~~~----~~~~v~~~~~D 70 (485)
..+|+|.| .|-+|+++++.|...|.-+++++|...-...+...+. ......+ ..-+++.+..+
T Consensus 17 ~s~VlVVG-aGGLGsevak~La~aGVG~ItlvD~D~Ve~SNLnRQflf~~~dVGk~KAeaaa~~L~~iNP~v~V~a~~~~ 95 (640)
T 1y8q_B 17 GGRVLVVG-AGGIGCELLKNLVLTGFSHIDLIDLDTIDVSNLNRQFLFQKKHVGRSKAQVAKESVLQFYPKANIVAYHDS 95 (640)
T ss_dssp HCEEEEEC-CSHHHHHHHHHHHHHTCCEEEEEECCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHTTCTTCEEEEEESC
T ss_pred cCeEEEEC-cCHHHHHHHHHHHHcCCCeEEEecCCEEChhhcCCCcCCChhHcChHHHHHHHHHHHHHCCCCeEEEEecc
Confidence 36899998 5889999999999999668999987642111111110 0011111 12345566667
Q ss_pred CCCHHHHHHHhcCCCEEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCcc
Q 047227 71 LRHKAQVLQALQGAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPS 133 (485)
Q Consensus 71 l~d~~~l~~~~~~~d~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~ 133 (485)
+.+.....+.++++|+||.+.. |...-..+-++|.+.++ .+|+.++.+
T Consensus 96 i~~~~~~~~~~~~~DlVvda~D--------------n~~aR~~ln~~c~~~~i-PlI~~g~~G 143 (640)
T 1y8q_B 96 IMNPDYNVEFFRQFILVMNALD--------------NRAARNHVNRMCLAADV-PLIESGTAG 143 (640)
T ss_dssp TTSTTSCHHHHTTCSEEEECCS--------------CHHHHHHHHHHHHHHTC-CEEEEEEET
T ss_pred cchhhhhHhhhcCCCEEEECCC--------------CHHHHHHHHHHHHHcCC-CEEEEEEec
Confidence 7543222456789999998753 22233456778888875 466665544
|
| >3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=94.37 E-value=0.047 Score=52.24 Aligned_cols=68 Identities=13% Similarity=0.135 Sum_probs=47.1
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCC
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGA 84 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 84 (485)
..+|+|.|.| .|.+|..++..|.+.| ++|++.+|.+... ..+...++.. ..+ ..++++++
T Consensus 19 ~~m~~I~iIG-~G~mG~~~A~~l~~~G-~~V~~~dr~~~~~-----------~~l~~~g~~~----~~~---~~~~~~~a 78 (310)
T 3doj_A 19 SHMMEVGFLG-LGIMGKAMSMNLLKNG-FKVTVWNRTLSKC-----------DELVEHGASV----CES---PAEVIKKC 78 (310)
T ss_dssp CCSCEEEEEC-CSHHHHHHHHHHHHTT-CEEEEECSSGGGG-----------HHHHHTTCEE----CSS---HHHHHHHC
T ss_pred ccCCEEEEEC-ccHHHHHHHHHHHHCC-CeEEEEeCCHHHH-----------HHHHHCCCeE----cCC---HHHHHHhC
Confidence 4568999997 8999999999999999 5999999876421 1111123322 122 45566778
Q ss_pred CEEEEcCC
Q 047227 85 EVVFHMAA 92 (485)
Q Consensus 85 d~Vih~aa 92 (485)
|+||-+..
T Consensus 79 Dvvi~~vp 86 (310)
T 3doj_A 79 KYTIAMLS 86 (310)
T ss_dssp SEEEECCS
T ss_pred CEEEEEcC
Confidence 99997664
|
| >2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=94.31 E-value=0.044 Score=55.90 Aligned_cols=37 Identities=16% Similarity=0.341 Sum_probs=31.8
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhc--CCceEEEeecCCc
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRY--DMFSVRIADLSDS 43 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~--G~~~V~~~~r~~~ 43 (485)
+++|+|.|.| .|++|..++..|.+. | ++|+++|+.+.
T Consensus 7 ~~~mkI~VIG-~G~vG~~~A~~La~~g~g-~~V~~~D~~~~ 45 (481)
T 2o3j_A 7 GKVSKVVCVG-AGYVGGPTCAMIAHKCPH-ITVTVVDMNTA 45 (481)
T ss_dssp CCCCEEEEEC-CSTTHHHHHHHHHHHCTT-SEEEEECSCHH
T ss_pred CCCCEEEEEC-CCHHHHHHHHHHHhcCCC-CEEEEEECCHH
Confidence 4457999997 899999999999998 6 58999998754
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.31 E-value=0.068 Score=52.49 Aligned_cols=74 Identities=14% Similarity=0.079 Sum_probs=50.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCCC
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGAE 85 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~d 85 (485)
.+.+|||+|+ |-+|...++.+...| .+|+++++++... .+... + ++.. ..|..+.+.+.++..++|
T Consensus 194 ~g~~VlV~Ga-G~vG~~aiqlak~~G-a~Vi~~~~~~~~~-------~~a~~-l---Ga~~-vi~~~~~~~~~~~~~g~D 259 (369)
T 1uuf_A 194 PGKKVGVVGI-GGLGHMGIKLAHAMG-AHVVAFTTSEAKR-------EAAKA-L---GADE-VVNSRNADEMAAHLKSFD 259 (369)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTT-CEEEEEESSGGGH-------HHHHH-H---TCSE-EEETTCHHHHHTTTTCEE
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCC-CEEEEEeCCHHHH-------HHHHH-c---CCcE-EeccccHHHHHHhhcCCC
Confidence 4679999997 789999999999899 5788888764311 01111 1 2222 246666655555556799
Q ss_pred EEEEcCCC
Q 047227 86 VVFHMAAP 93 (485)
Q Consensus 86 ~Vih~aa~ 93 (485)
+||++++.
T Consensus 260 vvid~~g~ 267 (369)
T 1uuf_A 260 FILNTVAA 267 (369)
T ss_dssp EEEECCSS
T ss_pred EEEECCCC
Confidence 99999873
|
| >4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A* | Back alignment and structure |
|---|
Probab=94.30 E-value=0.18 Score=49.21 Aligned_cols=70 Identities=10% Similarity=0.197 Sum_probs=49.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecC-CCHHHHHHHhcCCC
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDL-RHKAQVLQALQGAE 85 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl-~d~~~l~~~~~~~d 85 (485)
||+|+|+| +|..|..++..+.+.| ++|.++|..+..... . --.+++..|. .|.+.+....+++|
T Consensus 1 MK~I~ilG-gg~~g~~~~~~Ak~~G-~~vv~vd~~~~~~~~---~----------~aD~~~~~~~~~d~~~~~~~~~~~D 65 (363)
T 4ffl_A 1 MKTICLVG-GKLQGFEAAYLSKKAG-MKVVLVDKNPQALIR---N----------YADEFYCFDVIKEPEKLLELSKRVD 65 (363)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHHHTT-CEEEEEESCTTCTTT---T----------TSSEEEECCTTTCHHHHHHHHTSSS
T ss_pred CCEEEEEC-CCHHHHHHHHHHHHCC-CEEEEEeCCCCChhH---h----------hCCEEEECCCCcCHHHHHHHhcCCC
Confidence 58999998 6899999999999999 688888865431110 0 0123455564 46777777778999
Q ss_pred EEEEcC
Q 047227 86 VVFHMA 91 (485)
Q Consensus 86 ~Vih~a 91 (485)
+|+-..
T Consensus 66 ~v~~~~ 71 (363)
T 4ffl_A 66 AVLPVN 71 (363)
T ss_dssp EEEECC
T ss_pred EEEECC
Confidence 987543
|
| >4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major} | Back alignment and structure |
|---|
Probab=94.28 E-value=0.12 Score=48.60 Aligned_cols=56 Identities=18% Similarity=0.227 Sum_probs=46.1
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHH--HHhc
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVL--QALQ 82 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~--~~~~ 82 (485)
..+++++|.|.+|.+|+.++..|+++| .+|++.++... .+. +.++
T Consensus 163 l~Gk~vvVIG~s~iVG~p~A~lL~~~g-AtVtv~~~~T~--------------------------------~l~l~~~~~ 209 (300)
T 4a26_A 163 MAGKRAVVLGRSNIVGAPVAALLMKEN-ATVTIVHSGTS--------------------------------TEDMIDYLR 209 (300)
T ss_dssp CTTCEEEEECCCTTTHHHHHHHHHHTT-CEEEEECTTSC--------------------------------HHHHHHHHH
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCC-CeEEEEeCCCC--------------------------------Cchhhhhhc
Confidence 467899999999999999999999999 68998865321 233 7788
Q ss_pred CCCEEEEcCCC
Q 047227 83 GAEVVFHMAAP 93 (485)
Q Consensus 83 ~~d~Vih~aa~ 93 (485)
.+|+||...+.
T Consensus 210 ~ADIVI~Avg~ 220 (300)
T 4a26_A 210 TADIVIAAMGQ 220 (300)
T ss_dssp TCSEEEECSCC
T ss_pred cCCEEEECCCC
Confidence 99999998883
|
| >1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A* | Back alignment and structure |
|---|
Probab=94.28 E-value=0.14 Score=50.37 Aligned_cols=70 Identities=7% Similarity=0.029 Sum_probs=51.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc--C
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ--G 83 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--~ 83 (485)
++|+|||+|+ |.+|..+++.+.+.| ++|.+++..+... ... .-.+.+..|..|.+.+.++++ +
T Consensus 10 ~~~~ili~g~-g~~~~~~~~a~~~~G-~~v~~~~~~~~~~---~~~----------~~d~~~~~~~~d~~~l~~~~~~~~ 74 (391)
T 1kjq_A 10 AATRVMLLGS-GELGKEVAIECQRLG-VEVIAVDRYADAP---AMH----------VAHRSHVINMLDGDALRRVVELEK 74 (391)
T ss_dssp TCCEEEEESC-SHHHHHHHHHHHTTT-CEEEEEESSTTCG---GGG----------GSSEEEECCTTCHHHHHHHHHHHC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcC-CEEEEEECCCCCc---hhh----------hccceEECCCCCHHHHHHHHHHcC
Confidence 4589999985 789999999999999 5888887654311 000 012456678889988888875 7
Q ss_pred CCEEEEc
Q 047227 84 AEVVFHM 90 (485)
Q Consensus 84 ~d~Vih~ 90 (485)
+|+|+..
T Consensus 75 ~d~v~~~ 81 (391)
T 1kjq_A 75 PHYIVPE 81 (391)
T ss_dssp CSEEEEC
T ss_pred CCEEEEC
Confidence 9999853
|
| >1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A* | Back alignment and structure |
|---|
Probab=94.24 E-value=0.1 Score=51.47 Aligned_cols=36 Identities=19% Similarity=0.188 Sum_probs=31.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCc
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDS 43 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~ 43 (485)
.+++|+|+| .|-+|..+++.+...| .+|+++++...
T Consensus 171 ~g~~V~ViG-aG~iG~~aa~~a~~~G-a~V~~~d~~~~ 206 (384)
T 1l7d_A 171 PPARVLVFG-VGVAGLQAIATAKRLG-AVVMATDVRAA 206 (384)
T ss_dssp CCCEEEEEC-CSHHHHHHHHHHHHTT-CEEEEECSCST
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHHCC-CEEEEEeCCHH
Confidence 468999999 5999999999999999 48999988754
|
| >3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum} | Back alignment and structure |
|---|
Probab=94.21 E-value=0.084 Score=52.87 Aligned_cols=115 Identities=17% Similarity=0.133 Sum_probs=65.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccC------Cccch---hhhhhhhcCCCeEEEEecCCCHHH
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALE------PHEEQ---GILGEALRSGRAHYVSFDLRHKAQ 76 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~------~~~~~---~~~~~~~~~~~v~~~~~Dl~d~~~ 76 (485)
.|.+|.|.| .||+|-.++..|.+.| ++|+++|.++.+... +-.++ .++.......++.+. +|
T Consensus 20 ~m~~IaViG-lGYVGLp~A~~~A~~G-~~V~g~Did~~kV~~ln~G~~pi~Epgl~ell~~~~~~g~l~~t----t~--- 90 (444)
T 3vtf_A 20 HMASLSVLG-LGYVGVVHAVGFALLG-HRVVGYDVNPSIVERLRAGRPHIYEPGLEEALGRALSSGRLSFA----ES--- 90 (444)
T ss_dssp CCCEEEEEC-CSHHHHHHHHHHHHHT-CEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEC----SS---
T ss_pred CCCEEEEEc-cCHHHHHHHHHHHhCC-CcEEEEECCHHHHHHHHCCCCCCCCCCHHHHHHHHHHcCCeeEE----cC---
Confidence 457899997 9999999999999999 599999987542110 00111 112222223333321 12
Q ss_pred HHHHhcCCCEEEEcCCCC-CCCCchhhhHHHHHHHHHHHHHHHHhcC-CCEEEEecC
Q 047227 77 VLQALQGAEVVFHMAAPN-SSINNHKLHHSVNVEGTKNVIDACAELK-VKRLIYTSS 131 (485)
Q Consensus 77 l~~~~~~~d~Vih~aa~~-~~~~~~~~~~~~nv~~t~~ll~a~~~~~-v~r~V~~SS 131 (485)
..++++.+|++|-+.+++ .....++..+ -....+.+.+.++..+ -+-+|+-||
T Consensus 91 ~~~ai~~ad~~~I~VpTP~~~d~~~Dl~~--v~~a~~~I~~~l~~~~~g~lVV~eST 145 (444)
T 3vtf_A 91 AEEAVAATDATFIAVGTPPAPDGSADLRY--VEAAARAVGRGIRAKGRWHLVVVKST 145 (444)
T ss_dssp HHHHHHTSSEEEECCCCCBCTTSSBCCHH--HHHHHHHHHHHHHHHCSCCEEEECSC
T ss_pred HHHHHhcCCceEEEecCCCCCCCCCCcHH--HHHHHHHHHHHHhhcCCCeEEEEeCC
Confidence 345667889999888833 3333333222 1233455556665433 235666666
|
| >2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A* | Back alignment and structure |
|---|
Probab=94.21 E-value=0.09 Score=51.31 Aligned_cols=74 Identities=15% Similarity=0.019 Sum_probs=51.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCCC
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGAE 85 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~d 85 (485)
.+.+|||+|+ |-+|...++.+...| .+|+++++++.+ +....+.-++..+ .|..+.+.+.++..++|
T Consensus 180 ~g~~VlV~Ga-G~vG~~a~qlak~~G-a~Vi~~~~~~~~----------~~~~~~~lGa~~v-i~~~~~~~~~~~~~g~D 246 (357)
T 2cf5_A 180 PGLRGGILGL-GGVGHMGVKIAKAMG-HHVTVISSSNKK----------REEALQDLGADDY-VIGSDQAKMSELADSLD 246 (357)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHT-CEEEEEESSTTH----------HHHHHTTSCCSCE-EETTCHHHHHHSTTTEE
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCC-CeEEEEeCChHH----------HHHHHHHcCCcee-eccccHHHHHHhcCCCC
Confidence 5679999995 999999999999899 589888876431 1111101222222 35556666666666899
Q ss_pred EEEEcCC
Q 047227 86 VVFHMAA 92 (485)
Q Consensus 86 ~Vih~aa 92 (485)
+||++++
T Consensus 247 ~vid~~g 253 (357)
T 2cf5_A 247 YVIDTVP 253 (357)
T ss_dssp EEEECCC
T ss_pred EEEECCC
Confidence 9999997
|
| >2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=94.21 E-value=0.09 Score=50.00 Aligned_cols=71 Identities=7% Similarity=0.093 Sum_probs=50.3
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCC
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGA 84 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 84 (485)
..+++|+|.| .|-+|+.+++.|...| .+|++.+|..... .. +...+++.+. .+++.++++++
T Consensus 155 l~g~~v~IiG-~G~iG~~~a~~l~~~G-~~V~~~d~~~~~~----------~~-~~~~g~~~~~-----~~~l~~~l~~a 216 (300)
T 2rir_A 155 IHGSQVAVLG-LGRTGMTIARTFAALG-ANVKVGARSSAHL----------AR-ITEMGLVPFH-----TDELKEHVKDI 216 (300)
T ss_dssp STTSEEEEEC-CSHHHHHHHHHHHHTT-CEEEEEESSHHHH----------HH-HHHTTCEEEE-----GGGHHHHSTTC
T ss_pred CCCCEEEEEc-ccHHHHHHHHHHHHCC-CEEEEEECCHHHH----------HH-HHHCCCeEEc-----hhhHHHHhhCC
Confidence 4578999999 5999999999999999 5999999875311 00 1111333322 13467788999
Q ss_pred CEEEEcCCC
Q 047227 85 EVVFHMAAP 93 (485)
Q Consensus 85 d~Vih~aa~ 93 (485)
|+|+.+...
T Consensus 217 DvVi~~~p~ 225 (300)
T 2rir_A 217 DICINTIPS 225 (300)
T ss_dssp SEEEECCSS
T ss_pred CEEEECCCh
Confidence 999988763
|
| >2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* | Back alignment and structure |
|---|
Probab=94.20 E-value=0.074 Score=51.58 Aligned_cols=96 Identities=10% Similarity=0.019 Sum_probs=57.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCH---HHHHHHh-
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHK---AQVLQAL- 81 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~---~~l~~~~- 81 (485)
.+.+|||+|+ |-+|...++.+...|..+|+++++++.+.. +.. .- ... ..|..+. +.+.++.
T Consensus 164 ~g~~VlV~Ga-G~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~-------~~~----~l-a~~-v~~~~~~~~~~~~~~~~~ 229 (343)
T 2dq4_A 164 SGKSVLITGA-GPIGLMAAMVVRASGAGPILVSDPNPYRLA-------FAR----PY-ADR-LVNPLEEDLLEVVRRVTG 229 (343)
T ss_dssp TTSCEEEECC-SHHHHHHHHHHHHTTCCSEEEECSCHHHHG-------GGT----TT-CSE-EECTTTSCHHHHHHHHHS
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHH-------HHH----Hh-HHh-ccCcCccCHHHHHHHhcC
Confidence 4678999999 999999999999999327888887643110 011 11 111 2344432 2233322
Q ss_pred cCCCEEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecC
Q 047227 82 QGAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSS 131 (485)
Q Consensus 82 ~~~d~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS 131 (485)
.++|+||++++. + ......++.++..| +++.++.
T Consensus 230 ~g~D~vid~~g~------~--------~~~~~~~~~l~~~G--~iv~~g~ 263 (343)
T 2dq4_A 230 SGVEVLLEFSGN------E--------AAIHQGLMALIPGG--EARILGI 263 (343)
T ss_dssp SCEEEEEECSCC------H--------HHHHHHHHHEEEEE--EEEECCC
T ss_pred CCCCEEEECCCC------H--------HHHHHHHHHHhcCC--EEEEEec
Confidence 369999999872 0 11234455555544 7887664
|
| >3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=94.20 E-value=0.12 Score=48.39 Aligned_cols=55 Identities=11% Similarity=0.195 Sum_probs=45.6
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCC
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGA 84 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 84 (485)
..+++++|.|.+|.+|+.++..|+.+| .+|++..+.. ..+.+.++.+
T Consensus 159 l~Gk~vvVIG~s~iVG~p~A~lL~~~g-AtVtv~hs~t--------------------------------~~L~~~~~~A 205 (285)
T 3l07_A 159 TEGAYAVVVGASNVVGKPVSQLLLNAK-ATVTTCHRFT--------------------------------TDLKSHTTKA 205 (285)
T ss_dssp CTTCEEEEECCCTTTHHHHHHHHHHTT-CEEEEECTTC--------------------------------SSHHHHHTTC
T ss_pred CCCCEEEEECCCchhHHHHHHHHHHCC-CeEEEEeCCc--------------------------------hhHHHhcccC
Confidence 467999999999999999999999999 6888875431 1256778899
Q ss_pred CEEEEcCC
Q 047227 85 EVVFHMAA 92 (485)
Q Consensus 85 d~Vih~aa 92 (485)
|+||...+
T Consensus 206 DIVI~Avg 213 (285)
T 3l07_A 206 DILIVAVG 213 (285)
T ss_dssp SEEEECCC
T ss_pred CEEEECCC
Confidence 99998887
|
| >4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A | Back alignment and structure |
|---|
Probab=94.18 E-value=0.14 Score=51.70 Aligned_cols=37 Identities=8% Similarity=-0.025 Sum_probs=31.7
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCC
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSD 42 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~ 42 (485)
..+++|||+|++|-+|...++.+...| .+|++++++.
T Consensus 219 ~~g~~VlV~GasG~iG~~a~qla~~~G-a~vi~~~~~~ 255 (447)
T 4a0s_A 219 KQGDIVLIWGASGGLGSYAIQFVKNGG-GIPVAVVSSA 255 (447)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESSH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHcC-CEEEEEeCCH
Confidence 456899999999999999999999999 5888877643
|
| >3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=94.15 E-value=0.25 Score=48.16 Aligned_cols=78 Identities=8% Similarity=0.033 Sum_probs=49.3
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHH----
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQA---- 80 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~---- 80 (485)
..+.+|||+|+ |-+|...++.+...|...|.++++++.+. .+... + ...+..+..|-.+.+++.+.
T Consensus 178 ~~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~~~-------~~a~~-l-~~~~~~~~~~~~~~~~~~~~v~~~ 247 (363)
T 3m6i_A 178 RLGDPVLICGA-GPIGLITMLCAKAAGACPLVITDIDEGRL-------KFAKE-I-CPEVVTHKVERLSAEESAKKIVES 247 (363)
T ss_dssp CTTCCEEEECC-SHHHHHHHHHHHHTTCCSEEEEESCHHHH-------HHHHH-H-CTTCEEEECCSCCHHHHHHHHHHH
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHH-------HHHHH-h-chhcccccccccchHHHHHHHHHH
Confidence 34678999997 99999999999999943488887664311 11222 2 33333334443344444333
Q ss_pred hc--CCCEEEEcCC
Q 047227 81 LQ--GAEVVFHMAA 92 (485)
Q Consensus 81 ~~--~~d~Vih~aa 92 (485)
.. ++|+||++.+
T Consensus 248 t~g~g~Dvvid~~g 261 (363)
T 3m6i_A 248 FGGIEPAVALECTG 261 (363)
T ss_dssp TSSCCCSEEEECSC
T ss_pred hCCCCCCEEEECCC
Confidence 32 5999999987
|
| >3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} | Back alignment and structure |
|---|
Probab=94.14 E-value=0.083 Score=51.29 Aligned_cols=74 Identities=12% Similarity=0.119 Sum_probs=48.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCC--HHHHHHHh-c
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRH--KAQVLQAL-Q 82 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d--~~~l~~~~-~ 82 (485)
.+.+|||+||+|-+|...++.+...| .+|+++++++.+. .+... + +...+ .|..+ .+.+.++- +
T Consensus 150 ~g~~VlV~gg~G~vG~~a~qla~~~G-a~Vi~~~~~~~~~-------~~~~~-l---Ga~~v-i~~~~~~~~~~~~~~~~ 216 (346)
T 3fbg_A 150 EGKTLLIINGAGGVGSIATQIAKAYG-LRVITTASRNETI-------EWTKK-M---GADIV-LNHKESLLNQFKTQGIE 216 (346)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEECCSHHHH-------HHHHH-H---TCSEE-ECTTSCHHHHHHHHTCC
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHHcC-CEEEEEeCCHHHH-------HHHHh-c---CCcEE-EECCccHHHHHHHhCCC
Confidence 56899999999999999999999999 5899887754311 11111 1 22222 23222 23344432 2
Q ss_pred CCCEEEEcCC
Q 047227 83 GAEVVFHMAA 92 (485)
Q Consensus 83 ~~d~Vih~aa 92 (485)
++|+||++++
T Consensus 217 g~Dvv~d~~g 226 (346)
T 3fbg_A 217 LVDYVFCTFN 226 (346)
T ss_dssp CEEEEEESSC
T ss_pred CccEEEECCC
Confidence 5999999886
|
| >3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=94.04 E-value=0.044 Score=52.69 Aligned_cols=74 Identities=11% Similarity=0.183 Sum_probs=50.9
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCC
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGA 84 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 84 (485)
..+.+|||+||+|-+|...++.+...| .+|+++++... ..+... + ++.. ..|..+.+.+.+.++++
T Consensus 151 ~~g~~vlV~Ga~G~vG~~a~q~a~~~G-a~vi~~~~~~~--------~~~~~~-l---Ga~~-~i~~~~~~~~~~~~~g~ 216 (321)
T 3tqh_A 151 KQGDVVLIHAGAGGVGHLAIQLAKQKG-TTVITTASKRN--------HAFLKA-L---GAEQ-CINYHEEDFLLAISTPV 216 (321)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHTT-CEEEEEECHHH--------HHHHHH-H---TCSE-EEETTTSCHHHHCCSCE
T ss_pred CCCCEEEEEcCCcHHHHHHHHHHHHcC-CEEEEEeccch--------HHHHHH-c---CCCE-EEeCCCcchhhhhccCC
Confidence 456899999999999999999999999 58877764321 011111 1 2222 23555544466667899
Q ss_pred CEEEEcCC
Q 047227 85 EVVFHMAA 92 (485)
Q Consensus 85 d~Vih~aa 92 (485)
|+||++.+
T Consensus 217 D~v~d~~g 224 (321)
T 3tqh_A 217 DAVIDLVG 224 (321)
T ss_dssp EEEEESSC
T ss_pred CEEEECCC
Confidence 99999987
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=94.01 E-value=0.16 Score=51.40 Aligned_cols=100 Identities=14% Similarity=0.177 Sum_probs=69.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHH-hcCC
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQA-LQGA 84 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~-~~~~ 84 (485)
..++|+|.| .|-+|..+++.|.+ + +.|.++.+...+.. .+... -++..++.||-+|++-+.++ ++.+
T Consensus 234 ~~~~v~I~G-gG~ig~~lA~~L~~-~-~~v~iIE~d~~r~~-------~la~~--l~~~~Vi~GD~td~~~L~ee~i~~~ 301 (461)
T 4g65_A 234 PYRRIMIVG-GGNIGASLAKRLEQ-T-YSVKLIERNLQRAE-------KLSEE--LENTIVFCGDAADQELLTEENIDQV 301 (461)
T ss_dssp CCCEEEEEC-CSHHHHHHHHHHTT-T-SEEEEEESCHHHHH-------HHHHH--CTTSEEEESCTTCHHHHHHTTGGGC
T ss_pred cccEEEEEc-chHHHHHHHHHhhh-c-CceEEEecCHHHHH-------HHHHH--CCCceEEeccccchhhHhhcCchhh
Confidence 346899988 78999999998754 4 58998877644211 12222 25788999999999988876 5779
Q ss_pred CEEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecC
Q 047227 85 EVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSS 131 (485)
Q Consensus 85 d~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS 131 (485)
|+++-+.+ ++ +.|+.. .-.|++.|++|.|-.-.
T Consensus 302 D~~ia~T~-----~D-----e~Ni~~----~llAk~~gv~kvIa~vn 334 (461)
T 4g65_A 302 DVFIALTN-----ED-----ETNIMS----AMLAKRMGAKKVMVLIQ 334 (461)
T ss_dssp SEEEECCS-----CH-----HHHHHH----HHHHHHTTCSEEEEECS
T ss_pred cEEEEccc-----Cc-----HHHHHH----HHHHHHcCCcccccccc
Confidence 99996553 11 444432 34577889988874433
|
| >1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A | Back alignment and structure |
|---|
Probab=93.99 E-value=0.044 Score=53.59 Aligned_cols=74 Identities=7% Similarity=-0.097 Sum_probs=48.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCH-HHHHHHhcCC
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHK-AQVLQALQGA 84 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~-~~l~~~~~~~ 84 (485)
.+.+|||+|+ |-+|...++.+...| .+|+++++++.+. .+... + ++..+ .|..+. +...++..++
T Consensus 179 ~g~~VlV~Ga-G~vG~~~~qlak~~G-a~Vi~~~~~~~~~-------~~~~~-l---Ga~~v-~~~~~~~~~~~~~~~~~ 244 (360)
T 1piw_A 179 PGKKVGIVGL-GGIGSMGTLISKAMG-AETYVISRSSRKR-------EDAMK-M---GADHY-IATLEEGDWGEKYFDTF 244 (360)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHT-CEEEEEESSSTTH-------HHHHH-H---TCSEE-EEGGGTSCHHHHSCSCE
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCC-CEEEEEcCCHHHH-------HHHHH-c---CCCEE-EcCcCchHHHHHhhcCC
Confidence 4679999999 999999999999899 5898888764411 01111 1 22222 243333 2233333579
Q ss_pred CEEEEcCCC
Q 047227 85 EVVFHMAAP 93 (485)
Q Consensus 85 d~Vih~aa~ 93 (485)
|+||++++.
T Consensus 245 D~vid~~g~ 253 (360)
T 1piw_A 245 DLIVVCASS 253 (360)
T ss_dssp EEEEECCSC
T ss_pred CEEEECCCC
Confidence 999999984
|
| >4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1} | Back alignment and structure |
|---|
Probab=93.95 E-value=0.12 Score=48.23 Aligned_cols=55 Identities=16% Similarity=0.147 Sum_probs=45.4
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCC
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGA 84 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 84 (485)
..+++++|.|.+|.+|+.++..|+.+| .+|++..+... .+.+.++.+
T Consensus 159 l~Gk~vvVvGrs~iVG~plA~lL~~~g-AtVtv~hs~T~--------------------------------~L~~~~~~A 205 (286)
T 4a5o_A 159 LYGMDAVVVGASNIVGRPMALELLLGG-CTVTVTHRFTR--------------------------------DLADHVSRA 205 (286)
T ss_dssp CTTCEEEEECTTSTTHHHHHHHHHHTT-CEEEEECTTCS--------------------------------CHHHHHHTC
T ss_pred CCCCEEEEECCCchhHHHHHHHHHHCC-CeEEEEeCCCc--------------------------------CHHHHhccC
Confidence 468999999999999999999999999 68988754311 256777889
Q ss_pred CEEEEcCC
Q 047227 85 EVVFHMAA 92 (485)
Q Consensus 85 d~Vih~aa 92 (485)
|+||...+
T Consensus 206 DIVI~Avg 213 (286)
T 4a5o_A 206 DLVVVAAG 213 (286)
T ss_dssp SEEEECCC
T ss_pred CEEEECCC
Confidence 99998887
|
| >3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A | Back alignment and structure |
|---|
Probab=93.90 E-value=0.095 Score=48.71 Aligned_cols=55 Identities=13% Similarity=0.236 Sum_probs=44.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCCC
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGAE 85 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~d 85 (485)
.+++++|.|.++.+|+.++..|+++| .+|++.++.. ..+.+.++.+|
T Consensus 149 ~Gk~vvVvG~s~iVG~plA~lL~~~g-AtVtv~~~~t--------------------------------~~L~~~~~~AD 195 (276)
T 3ngx_A 149 HENTVTIVNRSPVVGRPLSMMLLNRN-YTVSVCHSKT--------------------------------KDIGSMTRSSK 195 (276)
T ss_dssp CSCEEEEECCCTTTHHHHHHHHHHTT-CEEEEECTTC--------------------------------SCHHHHHHHSS
T ss_pred CCCEEEEEcCChHHHHHHHHHHHHCC-CeEEEEeCCc--------------------------------ccHHHhhccCC
Confidence 57899999999999999999999999 6898875431 12556677889
Q ss_pred EEEEcCCC
Q 047227 86 VVFHMAAP 93 (485)
Q Consensus 86 ~Vih~aa~ 93 (485)
+||...+.
T Consensus 196 IVI~Avg~ 203 (276)
T 3ngx_A 196 IVVVAVGR 203 (276)
T ss_dssp EEEECSSC
T ss_pred EEEECCCC
Confidence 99988873
|
| >3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=93.90 E-value=0.091 Score=49.79 Aligned_cols=70 Identities=10% Similarity=0.112 Sum_probs=49.9
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCC
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGA 84 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 84 (485)
..+++|+|.| .|-+|+.+++.|...| .+|.+.+|..... .. ....+++.+ + .+++.++++++
T Consensus 153 l~g~~v~IiG-~G~iG~~~a~~l~~~G-~~V~~~dr~~~~~----------~~-~~~~g~~~~--~---~~~l~~~l~~a 214 (293)
T 3d4o_A 153 IHGANVAVLG-LGRVGMSVARKFAALG-AKVKVGARESDLL----------AR-IAEMGMEPF--H---ISKAAQELRDV 214 (293)
T ss_dssp STTCEEEEEC-CSHHHHHHHHHHHHTT-CEEEEEESSHHHH----------HH-HHHTTSEEE--E---GGGHHHHTTTC
T ss_pred CCCCEEEEEe-eCHHHHHHHHHHHhCC-CEEEEEECCHHHH----------HH-HHHCCCeec--C---hhhHHHHhcCC
Confidence 4578999998 7999999999999999 5999998875311 00 111233332 2 23467788999
Q ss_pred CEEEEcCC
Q 047227 85 EVVFHMAA 92 (485)
Q Consensus 85 d~Vih~aa 92 (485)
|+|+.+..
T Consensus 215 DvVi~~~p 222 (293)
T 3d4o_A 215 DVCINTIP 222 (293)
T ss_dssp SEEEECCS
T ss_pred CEEEECCC
Confidence 99998875
|
| >4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A* | Back alignment and structure |
|---|
Probab=93.87 E-value=0.19 Score=52.31 Aligned_cols=89 Identities=18% Similarity=0.116 Sum_probs=0.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHH-hcCCCE
Q 047227 8 RLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQA-LQGAEV 86 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~-~~~~d~ 86 (485)
++++|.|+ |-+|+++++.|.+.| +.|.+++..+. ..+... ..+.+|-+|++.+.++ ++++|+
T Consensus 349 ~~viIiG~-G~~G~~la~~L~~~g-~~v~vid~d~~-----------~~~~~~----~~i~gD~t~~~~L~~agi~~ad~ 411 (565)
T 4gx0_A 349 ELIFIIGH-GRIGCAAAAFLDRKP-VPFILIDRQES-----------PVCNDH----VVVYGDATVGQTLRQAGIDRASG 411 (565)
T ss_dssp CCEEEECC-SHHHHHHHHHHHHTT-CCEEEEESSCC-----------SSCCSS----CEEESCSSSSTHHHHHTTTSCSE
T ss_pred CCEEEECC-CHHHHHHHHHHHHCC-CCEEEEECChH-----------HHhhcC----CEEEeCCCCHHHHHhcCccccCE
Q ss_pred EEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCC-EEE
Q 047227 87 VFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVK-RLI 127 (485)
Q Consensus 87 Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~-r~V 127 (485)
|+-+.+ +-.....+...|++.+++ ++|
T Consensus 412 vi~~~~--------------~d~~ni~~~~~ak~l~~~~~ii 439 (565)
T 4gx0_A 412 IIVTTN--------------DDSTNIFLTLACRHLHSHIRIV 439 (565)
T ss_dssp EEECCS--------------CHHHHHHHHHHHHHHCSSSEEE
T ss_pred EEEECC--------------CchHHHHHHHHHHHHCCCCEEE
|
| >3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=93.83 E-value=0.028 Score=52.43 Aligned_cols=74 Identities=20% Similarity=0.193 Sum_probs=45.9
Q ss_pred CCCCCCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHH
Q 047227 1 MSGEENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQA 80 (485)
Q Consensus 1 M~~~~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~ 80 (485)
|+.+.++|+|.|.| .|.+|+.++..|.+.|+..|.+.+|.+... ......-++.. ..| +.++
T Consensus 4 m~~~~~~m~i~iiG-~G~mG~~~a~~l~~~g~~~v~~~~~~~~~~----------~~~~~~~g~~~-~~~------~~~~ 65 (266)
T 3d1l_A 4 MKRSIEDTPIVLIG-AGNLATNLAKALYRKGFRIVQVYSRTEESA----------RELAQKVEAEY-TTD------LAEV 65 (266)
T ss_dssp ---CGGGCCEEEEC-CSHHHHHHHHHHHHHTCCEEEEECSSHHHH----------HHHHHHTTCEE-ESC------GGGS
T ss_pred hhcCCCCCeEEEEc-CCHHHHHHHHHHHHCCCeEEEEEeCCHHHH----------HHHHHHcCCce-eCC------HHHH
Confidence 45444568999998 599999999999999953388888764321 11111113332 122 3345
Q ss_pred hcCCCEEEEcCC
Q 047227 81 LQGAEVVFHMAA 92 (485)
Q Consensus 81 ~~~~d~Vih~aa 92 (485)
++++|+||-+..
T Consensus 66 ~~~~Dvvi~av~ 77 (266)
T 3d1l_A 66 NPYAKLYIVSLK 77 (266)
T ss_dssp CSCCSEEEECCC
T ss_pred hcCCCEEEEecC
Confidence 678999997764
|
| >4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=93.81 E-value=0.21 Score=48.83 Aligned_cols=36 Identities=17% Similarity=0.203 Sum_probs=30.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHh-cCCceEEEeecCC
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIR-YDMFSVRIADLSD 42 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~-~G~~~V~~~~r~~ 42 (485)
.+.+|||+||+|-+|...++.+.. .| .+|+++++.+
T Consensus 171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g-~~Vi~~~~~~ 207 (363)
T 4dvj_A 171 AAPAILIVGGAGGVGSIAVQIARQRTD-LTVIATASRP 207 (363)
T ss_dssp SEEEEEEESTTSHHHHHHHHHHHHHCC-SEEEEECSSH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHhcC-CEEEEEeCCH
Confidence 467999999999999999988876 47 6899888764
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=93.73 E-value=0.22 Score=48.47 Aligned_cols=38 Identities=18% Similarity=0.133 Sum_probs=30.7
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCc
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDS 43 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~ 43 (485)
..+.+|||+|+ |-+|...++.+...|..+|+++++++.
T Consensus 170 ~~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~ 207 (356)
T 1pl8_A 170 TLGHKVLVCGA-GPIGMVTLLVAKAMGAAQVVVTDLSAT 207 (356)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESCHH
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHH
Confidence 34679999995 999999999998899338888887643
|
| >3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=93.70 E-value=0.076 Score=50.09 Aligned_cols=65 Identities=23% Similarity=0.215 Sum_probs=45.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCCCEE
Q 047227 8 RLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGAEVV 87 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~d~V 87 (485)
|+|.|.| .|.+|..++..|.+.| ++|++.+|.+... ..+...++.. .. ++.++++++|+|
T Consensus 2 ~~i~iIG-~G~mG~~~a~~l~~~G-~~V~~~dr~~~~~-----------~~~~~~g~~~----~~---~~~~~~~~aDvv 61 (287)
T 3pef_A 2 QKFGFIG-LGIMGSAMAKNLVKAG-CSVTIWNRSPEKA-----------EELAALGAER----AA---TPCEVVESCPVT 61 (287)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHTT-CEEEEECSSGGGG-----------HHHHHTTCEE----CS---SHHHHHHHCSEE
T ss_pred CEEEEEe-ecHHHHHHHHHHHHCC-CeEEEEcCCHHHH-----------HHHHHCCCee----cC---CHHHHHhcCCEE
Confidence 7899998 7999999999999999 5999999875421 1111123322 12 245566778999
Q ss_pred EEcCC
Q 047227 88 FHMAA 92 (485)
Q Consensus 88 ih~aa 92 (485)
|-+..
T Consensus 62 i~~vp 66 (287)
T 3pef_A 62 FAMLA 66 (287)
T ss_dssp EECCS
T ss_pred EEEcC
Confidence 97653
|
| >4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=93.64 E-value=0.17 Score=49.40 Aligned_cols=69 Identities=19% Similarity=0.163 Sum_probs=46.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCCCE
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGAEV 86 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~d~ 86 (485)
+|+|.|+| .|.+|..++..|.+.| ++|++.+|.+... ..+...++. ...+.+++.+..+.+|+
T Consensus 22 ~mkIgiIG-lG~mG~~~A~~L~~~G-~~V~v~dr~~~~~-----------~~l~~~g~~----~~~s~~e~~~~a~~~Dv 84 (358)
T 4e21_A 22 SMQIGMIG-LGRMGADMVRRLRKGG-HECVVYDLNVNAV-----------QALEREGIA----GARSIEEFCAKLVKPRV 84 (358)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHHHTT-CEEEEECSCHHHH-----------HHHHTTTCB----CCSSHHHHHHHSCSSCE
T ss_pred CCEEEEEC-chHHHHHHHHHHHhCC-CEEEEEeCCHHHH-----------HHHHHCCCE----EeCCHHHHHhcCCCCCE
Confidence 47999998 8999999999999999 5999999875421 112122322 12344444444445599
Q ss_pred EEEcCC
Q 047227 87 VFHMAA 92 (485)
Q Consensus 87 Vih~aa 92 (485)
||-+..
T Consensus 85 Vi~~vp 90 (358)
T 4e21_A 85 VWLMVP 90 (358)
T ss_dssp EEECSC
T ss_pred EEEeCC
Confidence 998764
|
| >2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A* | Back alignment and structure |
|---|
Probab=93.61 E-value=0.038 Score=56.28 Aligned_cols=35 Identities=14% Similarity=0.071 Sum_probs=31.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCc
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDS 43 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~ 43 (485)
.|+|.|.| +|++|..++..|.+.| ++|+++|+.+.
T Consensus 8 ~~~I~VIG-~G~vG~~lA~~la~~G-~~V~~~d~~~~ 42 (478)
T 2y0c_A 8 SMNLTIIG-SGSVGLVTGACLADIG-HDVFCLDVDQA 42 (478)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHHHTT-CEEEEECSCHH
T ss_pred CceEEEEC-cCHHHHHHHHHHHhCC-CEEEEEECCHH
Confidence 48999997 9999999999999999 59999998754
|
| >3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A | Back alignment and structure |
|---|
Probab=93.60 E-value=0.21 Score=47.81 Aligned_cols=66 Identities=15% Similarity=0.167 Sum_probs=49.8
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCC
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGA 84 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 84 (485)
..+|+|.|.| .|-||+.+++.|...| .+|.+.+|..... +++.... ..+++.++++++
T Consensus 137 l~g~tvGIiG-~G~IG~~vA~~l~~~G-~~V~~~dr~~~~~----------------~~~~~~~----~~~~l~ell~~a 194 (315)
T 3pp8_A 137 REEFSVGIMG-AGVLGAKVAESLQAWG-FPLRCWSRSRKSW----------------PGVESYV----GREELRAFLNQT 194 (315)
T ss_dssp STTCCEEEEC-CSHHHHHHHHHHHTTT-CCEEEEESSCCCC----------------TTCEEEE----SHHHHHHHHHTC
T ss_pred cCCCEEEEEe-eCHHHHHHHHHHHHCC-CEEEEEcCCchhh----------------hhhhhhc----ccCCHHHHHhhC
Confidence 4578999998 8999999999999999 5999998865411 1222222 135788899999
Q ss_pred CEEEEcCC
Q 047227 85 EVVFHMAA 92 (485)
Q Consensus 85 d~Vih~aa 92 (485)
|+|+-+..
T Consensus 195 DiV~l~~P 202 (315)
T 3pp8_A 195 RVLINLLP 202 (315)
T ss_dssp SEEEECCC
T ss_pred CEEEEecC
Confidence 99887765
|
| >3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A | Back alignment and structure |
|---|
Probab=93.55 E-value=0.25 Score=51.10 Aligned_cols=106 Identities=9% Similarity=0.112 Sum_probs=63.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccc------------hhhhhhhhc--CCCeEE--EEec
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEE------------QGILGEALR--SGRAHY--VSFD 70 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~------------~~~~~~~~~--~~~v~~--~~~D 70 (485)
+.+|+|.| .|-+|+++++.|...|.-+++++|.+.-...+...+ .......+. .+.++. +..+
T Consensus 327 ~~kVLIVG-aGGLGs~va~~La~aGVG~ItLvD~D~Ve~SNL~RQ~L~~~~DvG~~KAeaaa~~L~~iNP~v~v~~~~~~ 405 (598)
T 3vh1_A 327 NTKVLLLG-AGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRIFPLMDATGVKLS 405 (598)
T ss_dssp TCEEEEEC-CSHHHHHHHHHHHTTTCCEEEEECCSBCCTTSTTTSTTCCSTTCSSBHHHHHHHHHHHHCTTCEEEEECCC
T ss_pred CCeEEEEC-CCHHHHHHHHHHHHcCCCEEEEECCCcccccccccccccchhhcCcHHHHHHHHHHHhHCCCcEEEEEecc
Confidence 46899998 788999999999999966899998763211111111 001111111 344444 3333
Q ss_pred C--------------CCHHHHHHHhcCCCEEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEE
Q 047227 71 L--------------RHKAQVLQALQGAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIY 128 (485)
Q Consensus 71 l--------------~d~~~l~~~~~~~d~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~ 128 (485)
+ .+.+.+.++++++|+||.+.. +.+.- ..+-++|.+.+. -+|.
T Consensus 406 I~~pgh~i~~~~~~~l~~~~l~~li~~~DvVvdatD------n~~tR--------~lin~~c~~~~~-plI~ 462 (598)
T 3vh1_A 406 IPMIGHKLVNEEAQHKDFDRLRALIKEHDIIFLLVD------SRESR--------WLPSLLSNIENK-TVIN 462 (598)
T ss_dssp CCCSSCCCCSHHHHHHHHHHHHHHHHHCSEEEECCS------BGGGT--------HHHHHHHHHTTC-EEEE
T ss_pred ccccCcccccccccccCHHHHHHHHhcCCEEEECCC------CHHHH--------HHHHHHHHhcCC-CEEE
Confidence 3 134556778889999998753 22211 235677887775 4553
|
| >1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A* | Back alignment and structure |
|---|
Probab=93.51 E-value=0.13 Score=51.16 Aligned_cols=36 Identities=19% Similarity=0.121 Sum_probs=31.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCc
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDS 43 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~ 43 (485)
.+++|+|+| .|-+|..+++.+...| .+|+++|+...
T Consensus 171 ~g~~V~ViG-aG~iG~~aa~~a~~~G-a~V~v~D~~~~ 206 (401)
T 1x13_A 171 PPAKVMVIG-AGVAGLAAIGAANSLG-AIVRAFDTRPE 206 (401)
T ss_dssp CCCEEEEEC-CSHHHHHHHHHHHHTT-CEEEEECSCGG
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHHCC-CEEEEEcCCHH
Confidence 468999999 5999999999999999 58999988754
|
| >3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A | Back alignment and structure |
|---|
Probab=93.50 E-value=0.085 Score=53.41 Aligned_cols=37 Identities=8% Similarity=-0.056 Sum_probs=31.6
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCC
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSD 42 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~ 42 (485)
..+.+|||+|++|-+|...++.+...| .+|+++++++
T Consensus 227 ~~g~~VlV~GasG~vG~~avqlak~~G-a~vi~~~~~~ 263 (456)
T 3krt_A 227 KQGDNVLIWGASGGLGSYATQFALAGG-ANPICVVSSP 263 (456)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESSH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHcC-CeEEEEECCH
Confidence 456899999999999999999999999 5888877643
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 485 | ||||
| d2b69a1 | 312 | c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 | 8e-45 | |
| d1r6da_ | 322 | c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) { | 8e-45 | |
| d1kewa_ | 361 | c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) { | 3e-44 | |
| d1db3a_ | 357 | c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escheric | 3e-40 | |
| d2c5aa1 | 363 | c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {T | 4e-33 | |
| d1sb8a_ | 341 | c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase W | 7e-33 | |
| d1e6ua_ | 315 | c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimeras | 2e-31 | |
| d1t2aa_ | 347 | c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (H | 4e-31 | |
| d1udca_ | 338 | c.2.1.2 (A:) Uridine diphosphogalactose-4-epimeras | 2e-30 | |
| d1oc2a_ | 346 | c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) { | 2e-26 | |
| d1rpna_ | 321 | c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomo | 4e-26 | |
| d1z45a2 | 347 | c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-ep | 6e-23 | |
| d1orra_ | 338 | c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella | 3e-22 | |
| d1n7ha_ | 339 | c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cr | 2e-20 | |
| d1ek6a_ | 346 | c.2.1.2 (A:) Uridine diphosphogalactose-4-epimeras | 1e-19 | |
| d2blla1 | 342 | c.2.1.2 (A:316-657) Polymyxin resistance protein A | 5e-17 | |
| d1gy8a_ | 383 | c.2.1.2 (A:) Uridine diphosphogalactose-4-epimeras | 2e-16 | |
| d1y1pa1 | 342 | c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolo | 3e-14 | |
| d1qyda_ | 312 | c.2.1.2 (A:) Pinoresinol-lariciresinol reductase { | 5e-14 | |
| d1rkxa_ | 356 | c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia | 6e-12 | |
| d1qyca_ | 307 | c.2.1.2 (A:) Phenylcoumaran benzylic ether reducta | 3e-11 | |
| d1hdoa_ | 205 | c.2.1.2 (A:) Biliverdin IX beta reductase {Human ( | 2e-09 | |
| d1i24a_ | 393 | c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 | 6e-08 | |
| d1xgka_ | 350 | c.2.1.2 (A:) Negative transcriptional regulator Nm | 1e-07 | |
| d2q46a1 | 252 | c.2.1.2 (A:2-253) Hypothetical protein At5g02240 ( | 3e-06 | |
| d1eq2a_ | 307 | c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimer | 6e-06 | |
| d1vl0a_ | 281 | c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD | 1e-05 | |
| d1n2sa_ | 298 | c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reduct | 0.001 |
| >d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 312 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-glucuronate decarboxylase 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 157 bits (398), Expect = 8e-45
Identities = 66/353 (18%), Positives = 114/353 (32%), Gaps = 62/353 (17%)
Query: 12 VTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDL 71
+TGG GF HL + L+ V + D + E + +F+L
Sbjct: 6 ITGGAGFVGSHLTDKLMMDG-HEVTVVDNFFTGRKRNVEH-----------WIGHENFEL 53
Query: 72 RHKAQVLQALQGAEVVFHMAAPNS---SINNHKLHHSVNVEGTKNVIDACAELKVKRLIY 128
+ V + ++H+A+P S + N N GT N++ + RL+
Sbjct: 54 INHDVVEPLYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGA-RLLL 112
Query: 129 TSSPSVVFDGVHGIINGNEALP-YPPKHNDFYSATKAEGEALVIKANGTNGLLTCCIRPS 187
S+ V D + + P Y K E + G+ R
Sbjct: 113 ASTSEVYGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVARIF 172
Query: 188 SIFGPGDRL----LVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICAERALASE 243
+ FGP + +V + + A G+ + G G+ F YV+++ + +
Sbjct: 173 NTFGPRMHMNDGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVAL------- 225
Query: 244 VTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELTYRL 303
+ N E EF LI +G +
Sbjct: 226 ---MNSNVSSPVNLGNPEEHTILEFAQLIKNLVGSGSEIQFLS----------------- 265
Query: 304 LGPYGMKVPQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSY 356
+ R D KAK +LG+ P+VPLEEG+ + + +
Sbjct: 266 ----------EAQDDPQ----KRKPDIKKAKLMLGWEPVVPLEEGLNKAIHYF 304
|
| >d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]} Length = 322 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptomyces venezuelae [TaxId: 54571]
Score = 157 bits (398), Expect = 8e-45
Identities = 75/350 (21%), Positives = 128/350 (36%), Gaps = 48/350 (13%)
Query: 12 VTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDL 71
VTGG GF H V L+ V ++ +L + L R +V D+
Sbjct: 5 VTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFVHGDI 64
Query: 72 RHKAQVLQALQGAEVVFHMAAP---NSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIY 128
R + + L+G + + H AA + SI + NV+GT+ ++ + V R+++
Sbjct: 65 RDAGLLARELRGVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVGRVVH 124
Query: 129 TSSPSVVFDGVHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANGTNGLLTCCIRPSS 188
S+ V G + P + N Y+A+KA + + + T GL R +
Sbjct: 125 VSTNQVYGSIDSGSWTES----SPLEPNSPYAASKAGSDLVARAYHRTYGLDVRITRCCN 180
Query: 189 IFGPGDRL--LVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICAERALASEVTV 246
+GP L+P V G + + GDG NV ++ + + +
Sbjct: 181 NYGPYQHPEKLIPLFVTNLLDGGTLPLYGDGANVREWVHTDDHCRGIALV---------L 231
Query: 247 AEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELTYRLLGP 306
A AG+ Y + + E ++L+ LG ++ V H +
Sbjct: 232 AGGRAGEIYHIGGGLELTNRELTGILLDSLGADWSSVR---KVADRKGHDLR-------- 280
Query: 307 YGMKVPQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSY 356
+ D K + LGY P V +G+ RTV Y
Sbjct: 281 -------------------YSLDGGKIERELGYRPQVSFADGLARTVRWY 311
|
| >d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} Length = 361 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Score = 157 bits (397), Expect = 3e-44
Identities = 84/368 (22%), Positives = 137/368 (37%), Gaps = 61/368 (16%)
Query: 12 VTGGRGFAARHLVEMLIRYDMFSVRIAD-LSDSIALEPHEEQGILGEALRSGRAHYVSFD 70
+TGG GF +V +I+ +V D L+ + LE L + S R ++ D
Sbjct: 5 ITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLES------LSDISESNRYNFEHAD 58
Query: 71 LRHKAQVLQALQGA--EVVFHMAAPNS---SINNHKLHHSVNVEGTKNVIDACAELKVK- 124
+ A++ + + + V H+AA + SI N+ GT +++ +
Sbjct: 59 ICDSAEITRIFEQYQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSAL 118
Query: 125 --------RLIYTSSPSVVFDGVH-GIINGNEALPY-----PPKHNDFYSATKAEGEALV 170
R + S+ V D H + + LP + YSA+KA + LV
Sbjct: 119 GEDKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLFTETTAYAPSSPYSASKASSDHLV 178
Query: 171 IKANGTNGLLTCCIRPSSIFGPGDRL--LVPSLVAAARAGKSKFIIGDGNNVYDFTYVAN 228
T GL T S+ +GP L+P ++ A GK I G G+ + D+ YV +
Sbjct: 179 RAWRRTYGLPTIVTNCSNNYGPYHFPEKLIPLVILNALEGKPLPIYGKGDQIRDWLYVED 238
Query: 229 VAHAHICAERALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAF 288
A A V E AG+ Y + K + V I + L P
Sbjct: 239 HARALHMV---------VTEGKAGETYNIGGHNEKKNLDVVFTICDLLDEIVP------- 282
Query: 289 VMMPIAHMVELTYRLLGPYGMKVPQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEG 348
++ ++TY P + D K LG+ P+ E G
Sbjct: 283 --KATSYREQITYVADRPGHDR--------------RYAIDAGKISRELGWKPLETFESG 326
Query: 349 IKRTVDSY 356
I++TV+ Y
Sbjct: 327 IRKTVEWY 334
|
| >d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]} Length = 357 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Escherichia coli [TaxId: 562]
Score = 146 bits (368), Expect = 3e-40
Identities = 53/360 (14%), Positives = 117/360 (32%), Gaps = 31/360 (8%)
Query: 12 VTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDL 71
+TG G +L E L+ + V S + + + H DL
Sbjct: 6 ITGVTGQDGSYLAEFLLEKG-YEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDL 64
Query: 72 RHKAQVLQALQGAEV-----VFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVK-- 124
+ + + L+ + + M+ S + + V+ GT +++A L ++
Sbjct: 65 SDTSNLTRILREVQPDEVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLEKK 124
Query: 125 -RLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANGTNGLLTCC 183
R S+ + G+ I E P+ P Y+ K + + + G+ C
Sbjct: 125 TRFYQASTSELY--GLVQEIPQKETTPFYP--RSPYAVAKLYAYWITVNYRESYGMYACN 180
Query: 184 IRPSSIFGPG------DRLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICAE 237
+ P R + ++ A+ +S +G+ +++ D+ + +
Sbjct: 181 GILFNHESPRRGETFVTRKITRAIANIAQGLESCLYLGNMDSLRDWGHAKDYVKMQWMM- 239
Query: 238 RALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMV 297
++ + + + +FV + LG + + +
Sbjct: 240 ---------LQQEQPEDFVIATGVQYSVRQFVEMAAAQLGIKLRFEGTGVEEKGIVVSVT 290
Query: 298 ELTYRLLGPYGMKVPQLTPSRVRLLSCSRTF-DCSKAKDLLGYMPIVPLEEGIKRTVDSY 356
+ P G + + P R D +KA + LG+ P + L E + V +
Sbjct: 291 GHDAPGVKP-GDVIIAVDPRYFRPAEVETLLGDPTKAHEKLGWKPEITLREMVSEMVAND 349
|
| >d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 363 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose-3', 5'-epimerase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 126 bits (318), Expect = 4e-33
Identities = 76/403 (18%), Positives = 131/403 (32%), Gaps = 88/403 (21%)
Query: 11 VVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFD 70
+TG GF A H+ L V +D + + + D
Sbjct: 19 SITGAGGFIASHIARRLKHEG-HYVIASDWKKNEHMTEDMF-----------CDEFHLVD 66
Query: 71 LRHKAQVLQALQGAEVVFHMAAPNSSINNHKLHH----SVNVEGTKNVIDACAELKVKRL 126
LR L+ +G + VF++AA + + +H N + N+I+A +KR
Sbjct: 67 LRVMENCLKVTEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRF 126
Query: 127 IYTSS---PSVVFDGVHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANGTNGLLTCC 183
Y SS ++ E+ +P + D + K E L N G+
Sbjct: 127 FYASSACIYPEFKQLETTNVSLKESDAWPAEPQDAFGLEKLATEELCKHYNKDFGIECRI 186
Query: 184 IRPSSIFGPGDRLLVPSLVAAARAGK-------SKFIIGDGNNVYDFTYVANVAHAHICA 236
R +I+GP A A + + GDG FT++ +
Sbjct: 187 GRFHNIYGPFGTWKGGREKAPAAFCRKAQTSTDRFEMWGDGLQTRSFTFIDECVEGVLRL 246
Query: 237 ERALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHM 296
+ + + + E + E ++L + P IP
Sbjct: 247 ----------TKSDFREPVNIGSDEMVSMNEMAEMVLSFEEKKLPIHHIP---------- 286
Query: 297 VELTYRLLGPYGMKVPQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSY 356
GP G++ R D + K+ LG+ P + L+EG++ T
Sbjct: 287 --------GPEGVR--------------GRNSDNNLIKEKLGWAPNMRLKEGLRITYFWI 324
Query: 357 SHLRAENQLKR---------------VGPSKASVLLGSGRVAD 384
+ Q+++ V ++A V LGS R AD
Sbjct: 325 -----KEQIEKEKAKGSDVSLYGSSKVVGTQAPVQLGSLRAAD 362
|
| >d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]} Length = 341 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-N-acetylglucosamine 4-epimerase WbpP species: Pseudomonas aeruginosa [TaxId: 287]
Score = 125 bits (315), Expect = 7e-33
Identities = 72/355 (20%), Positives = 118/355 (33%), Gaps = 49/355 (13%)
Query: 12 VTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDL 71
+TG GF +L+E L++ D V D + +E L + ++ D+
Sbjct: 21 ITGVAGFIGSNLLETLLKLD-QKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDI 79
Query: 72 RHKAQVLQALQGAEVVFHM---AAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIY 128
R+ A G + V H + SIN+ ++ N++G N++ A + KV+ Y
Sbjct: 80 RNLDDCNNACAGVDYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAKVQSFTY 139
Query: 129 TSSPSVVFDGVHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANGTNGLLTCCIRPSS 188
+S S D + K Y+ TK E + G T +R +
Sbjct: 140 AASSSTYGDHPGLPKVED----TIGKPLSPYAVTKYVNELYADVFSRCYGFSTIGLRYFN 195
Query: 189 IFGPGDRL------LVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICAERALAS 242
+FG ++P ++ G +I GDG DF Y+ N A++ A
Sbjct: 196 VFGRRQDPNGAYAAVIPKWTSSMIQGDDVYINGDGETSRDFCYIENTVQANLLA------ 249
Query: 243 EVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKI-PAFVMMPIAHMVELTY 301
T A Q Y + + + +GL P +
Sbjct: 250 -ATAGLDARNQVYNIAVGGRTSLNQLFFALRDGLAENGVSYHREPVYRDFREGD------ 302
Query: 302 RLLGPYGMKVPQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSY 356
V D SKA LLGY P + G+ + Y
Sbjct: 303 ---------VRHSLA------------DISKAAKLLGYAPKYDVSAGVALAMPWY 336
|
| >d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]} Length = 315 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) species: Escherichia coli [TaxId: 562]
Score = 121 bits (303), Expect = 2e-31
Identities = 58/371 (15%), Positives = 104/371 (28%), Gaps = 80/371 (21%)
Query: 12 VTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDL 71
+ G RG + L + + D + +L
Sbjct: 7 IAGHRGMVGSAIRRQLEQRG-DVELVLRTRDEL-------------------------NL 40
Query: 72 RHKAQVLQALQG--AEVVFHMAAPNS----SINNHKLHHSVNVEGTKNVIDACAELKVKR 125
V + V+ AA + N+ N+I A + V +
Sbjct: 41 LDSRAVHDFFASERIDQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVNK 100
Query: 126 LIYTSSPSVVFDGVHGIINGNEALPYPPKH-NDFYSATKAEGEALVIKANGTNGLLTCCI 184
L++ S + + +E L + N+ Y+ K G L N G +
Sbjct: 101 LLFLGSSCIYPKLAKQPMAESELLQGTLEPTNEPYAIAKIAGIKLCESYNRQYGRDYRSV 160
Query: 185 RPSSIFGPGDR-----------LLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAH 233
P++++GP D LL A A+ + G G + +F +V ++A A
Sbjct: 161 MPTNLYGPHDNFHPSNSHVIPALLRRFHEATAQKAPDVVVWGSGTPMREFLHVDDMAAAS 220
Query: 234 ICAERALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPI 293
I + V E I + +GY+
Sbjct: 221 IHVMELAHEVWLENTQPMLSHINVGTGVDCTIRELAQTIAKVVGYK-------------- 266
Query: 294 AHMVELTYRLLGPYGMKVPQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTV 353
+ + P G + D ++ LG+ + LE G+ T
Sbjct: 267 ---GRVVFDASKPDGTP--------------RKLLDVTRLHQ-LGWYHEISLEAGLASTY 308
Query: 354 DSYSHLRAENQ 364
+ ENQ
Sbjct: 309 QWFL----ENQ 315
|
| >d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]} Length = 347 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Human (Homo sapiens) [TaxId: 9606]
Score = 120 bits (302), Expect = 4e-31
Identities = 57/359 (15%), Positives = 101/359 (28%), Gaps = 38/359 (10%)
Query: 12 VTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDL 71
+TG G +L E L+ I S S E +A G DL
Sbjct: 6 ITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGDL 65
Query: 72 RHKAQVLQALQGAEVVFH-----MAAPNSSINNHKLHHSVNVEGTKNVIDACAELKV--- 123
+++ + + + S + + V+ GT ++DA +
Sbjct: 66 TDSTCLVKIINEVKPTEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCGLINS 125
Query: 124 KRLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANGTNGLLTCC 183
+ S+ + G I E P+ P Y A K +V+ L
Sbjct: 126 VKFYQASTSELY--GKVQEIPQKETTPFYP--RSPYGAAKLYAYWIVVNFREAYNLFAVN 181
Query: 184 IRPSSIFGPGDR------LLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICAE 237
+ P + S+ F +G+ + D+ + + A
Sbjct: 182 GILFNHESPRRGANFVTRKISRSVAKIYLGQLECFSLGNLDAKRDWGHAKDYVEAMWLML 241
Query: 238 RALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMV 297
+ E V A K + + + G + +
Sbjct: 242 QNDEPEDFVI---ATGEVHSVREFVEKSFLHIGKTIVWEGKNENEVGRCKETGKVHVTVD 298
Query: 298 ELTYRLLGPYGMKVPQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSY 356
YR P+ V L DC+KAK L + P V +E ++ V +
Sbjct: 299 LKYYR-------------PTEVDFLQG----DCTKAKQKLNWKPRVAFDELVREMVHAD 340
|
| >d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} Length = 338 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Escherichia coli [TaxId: 562]
Score = 118 bits (296), Expect = 2e-30
Identities = 63/365 (17%), Positives = 110/365 (30%), Gaps = 58/365 (15%)
Query: 12 VTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDL 71
VTGG G+ H L++ + + +L +S + E L +V D+
Sbjct: 5 VTGGSGYIGSHTCVQLLQNGHDVIILDNLCNS-----KRSVLPVIERLGGKHPTFVEGDI 59
Query: 72 RHKAQV--LQALQGAEVVFHMAAPNS---SINNHKLHHSVNVEGTKNVIDACAELKVKRL 126
R++A + + + V H A + S+ ++ NV GT +I A VK
Sbjct: 60 RNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNF 119
Query: 127 IYTSSPSVVFDGVHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANGTNGLLTCCI-R 185
I++SS +V D + P Y +K E ++ + + R
Sbjct: 120 IFSSSATVYGDQPKIPYVESFPTGTP---QSPYGKSKLMVEQILTDLQKAQPDWSIALLR 176
Query: 186 PSSIFGPGD------------RLLVPSLVAAARAGKSKFII-GDGNNVYDFTYVANVAHA 232
+ G L+P + A + I G+ D T V + H
Sbjct: 177 YFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIHV 236
Query: 233 HICAERALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMP 292
A+ + + +A K Y + + V+ + G P
Sbjct: 237 MDLADGHVVAMEKLANKPGVHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAP------ 290
Query: 293 IAHMVELTYRLLGPYGMKVPQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRT 352
+ D SKA L + L+E + T
Sbjct: 291 ---------------------RREGDLPAYWA----DASKADRELNWRVTRTLDEMAQDT 325
Query: 353 VDSYS 357
S
Sbjct: 326 WHWQS 330
|
| >d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} Length = 346 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Score = 107 bits (268), Expect = 2e-26
Identities = 70/367 (19%), Positives = 122/367 (33%), Gaps = 73/367 (19%)
Query: 12 VTGGRGFAARHLVEMLIR--YDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSF 69
VTGG GF + V + D+ + L+ + E + R V
Sbjct: 7 VTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKANLEA-------ILGDRVELVVG 59
Query: 70 DLRHKAQVLQALQGAEVVFHMAAPNS---SINNHKLHHSVNVEGTKNVIDACAELKVKRL 126
D+ V + A+ + H AA + S+N+ N GT +++A + ++
Sbjct: 60 DIADAELVDKLAAKADAIVHYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDIRF- 118
Query: 127 IYTSSPSVVFDGVHGIINGNEALPY-------------PPKHNDFYSATKAEGEALVIKA 173
V D V+G + E LP + YS+TKA + +V
Sbjct: 119 -----HHVSTDEVYGDLPLREDLPGHGEGPGEKFTAETNYNPSSPYSSTKAASDLIVKAW 173
Query: 174 NGTNGLLTCCIRPSSIFGPGDRL--LVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAH 231
+ G+ S+ +GP + +P + AG + G+G NV D+ + + +
Sbjct: 174 VRSFGVKATISNCSNNYGPYQHIEKFIPRQITNILAGIKPKLYGEGKNVRDWIHTNDHST 233
Query: 232 AHICAERALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMM 291
+ G+ Y + E + LILE +G + V
Sbjct: 234 GVWAILT---------KGRMGETYLIGADGEKNNKEVLELILEKMGQPKDAYD---HVTD 281
Query: 292 PIAHMVELTYRLLGPYGMKVPQLTPSRVRLLSCSRTFDCSKAKDLLGYMP-IVPLEEGIK 350
H + D SK +D LG+ P EG++
Sbjct: 282 RAGHDLRY---------------------------AIDASKLRDELGWTPQFTDFSEGLE 314
Query: 351 RTVDSYS 357
T+ Y+
Sbjct: 315 ETIQWYT 321
|
| >d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]} Length = 321 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 106 bits (264), Expect = 4e-26
Identities = 52/357 (14%), Positives = 110/357 (30%), Gaps = 59/357 (16%)
Query: 12 VTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDL 71
VTG G +L ++L+ + S E GI G Y D+
Sbjct: 5 VTGITGQDGAYLAKLLLEKGYRVHGLVARRSSDTRWRLRELGI------EGDIQYEDGDM 58
Query: 72 RHKAQVLQALQGAEVVFHMAAPNSSINNHKLHHSV-----NVEGTKNVIDACAELKVKRL 126
V +A+ A+ S + V + G ++++A + +
Sbjct: 59 ADACSVQRAVIKAQPQEVYNLAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPETR 118
Query: 127 IYTSSPSVVFDGVHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANGTNGLLTCCIRP 186
Y +S S +F G+ +E P+ Y K G + + + GL
Sbjct: 119 FYQASTSEMF-GLIQAERQDENTPF--YPRSPYGVAKLYGHWITVNYRESFGLHASSGIL 175
Query: 187 SSIFGPG------DRLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICAERAL 240
+ P R + ++ + + +G+ + D+ + + A +
Sbjct: 176 FNHESPLRGIEFVTRKVTDAVARIKLGKQQELRLGNVDAKRDWGFAGDYVEAMWLMLQQD 235
Query: 241 ASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELT 300
++ V + V + M ++
Sbjct: 236 KADDYV--------------------------------------VATGVTTTVRDMCQIA 257
Query: 301 YRLLGPYGMKVPQLTPSRVRLLSCSRTF-DCSKAKDLLGYMPIVPLEEGIKRTVDSY 356
+ +G ++ P+ R + +KA+ +LG+ P L+E I+ V++
Sbjct: 258 FEHVGLDYRDFLKIDPAFFRPAEVDVLLGNPAKAQRVLGWKPRTSLDELIRMMVEAD 314
|
| >d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 347 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 97.4 bits (241), Expect = 6e-23
Identities = 56/369 (15%), Positives = 110/369 (29%), Gaps = 60/369 (16%)
Query: 12 VTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDL 71
VTGG G+ H V LI + +AD + + E L + DL
Sbjct: 6 VTGGAGYIGSHTVVELIENG-YDCVVADNLSNSTYDSVARL----EVLTKHHIPFYEVDL 60
Query: 72 RHKAQV--LQALQGAEVVFHMAAPNSSINNHK---LHHSVNVEGTKNVIDACAELKVKRL 126
+ + + + V H A + + + ++ N+ GT +++ + V +
Sbjct: 61 CDRKGLEKVFKEYKIDSVIHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVSKF 120
Query: 127 IYTSSPSVVFDGVHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANGTN--------- 177
+++SS +V D P + Y TK E ++ ++
Sbjct: 121 VFSSSATVYGDATRFPNMIPIPEECPLGPTNPYGHTKYAIENILNDLYNSDKKSWKFAIL 180
Query: 178 -GLLTCCIRPSSIFGPGD----RLLVPSLVAAARAGKSKFII-GDGNNVYDFTYVANVAH 231
PS + G L+P + A + K I GD + D T + + H
Sbjct: 181 RYFNPIGAHPSGLIGEDPLGIPNNLLPYMAQVAVGRREKLYIFGDDYDSRDGTPIRDYIH 240
Query: 232 AHICAERALASEV----TVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPA 287
A+ +A+ + + + + + + +E + G P
Sbjct: 241 VVDLAKGHIAALQYLEAYNENEGLCREWNLGSGKGSTVFEVYHAFCKASGIDLPYKVTG- 299
Query: 288 FVMMPIAHMVELTYRLLGPYGMKVPQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEE 347
V L+ +AK L + + +E+
Sbjct: 300 --------------------------RRAGDVLNLTA----KPDRAKRELKWQTELQVED 329
Query: 348 GIKRTVDSY 356
K
Sbjct: 330 SCKDLWKWT 338
|
| >d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]} Length = 338 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-tyvelose-2-epimerase species: Salmonella typhi [TaxId: 90370]
Score = 95.6 bits (236), Expect = 3e-22
Identities = 63/376 (16%), Positives = 120/376 (31%), Gaps = 70/376 (18%)
Query: 12 VTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDL 71
+TGG GF +L + + + +LS A + L G +V D+
Sbjct: 5 ITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGATDN------LHWLSSLGNFEFVHGDI 58
Query: 72 RHKAQVLQALQG--AEVVFHMAAPN---SSINNHKLHHSVNVEGTKNVIDACAELKVKRL 126
R+K V + + + FH+A +SI+N + +NV GT N+++A +
Sbjct: 59 RNKNDVTRLITKYMPDSCFHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCN 118
Query: 127 IYTSSPSVVFDGVHGIINGNEALPY-------------PPKHNDFYSATKAEGEALVIKA 173
I SS + V+ + Y + Y +K + ++
Sbjct: 119 IIYSSTNKVYGDLEQYKYNETETRYTCVDKPNGYDESTQLDFHSPYGCSKGAADQYMLDY 178
Query: 174 NGTNGLLTCCIRPSSIFGPGDRLLVPS----------LVAAARAGKSKFIIGDGNNVYDF 223
GL T R SS++G + K I G+G V D
Sbjct: 179 ARIFGLNTVVFRHSSMYGGRQFATYDQGWVGWFCQKAVEIKNGINKPFTISGNGKQVRDV 238
Query: 224 TYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRI 283
+ ++ + A ++ + T + S+ E L+ +
Sbjct: 239 LHAEDMISLYFTALANVSKI-----RGNAFNIGGTIVNSLSLLELFKLLEDYCNIDMRFT 293
Query: 284 KIPAFVMMPIAHMVELTYRLLGPYGMKVPQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIV 343
+P + S R+ D K + + + P V
Sbjct: 294 NLP---------------------------VRESDQRVFVA----DIKKITNAIDWSPKV 322
Query: 344 PLEEGIKRTVDSYSHL 359
++G+++ D S +
Sbjct: 323 SAKDGVQKMYDWTSSI 338
|
| >d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 339 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 90.1 bits (222), Expect = 2e-20
Identities = 53/370 (14%), Positives = 101/370 (27%), Gaps = 49/370 (13%)
Query: 12 VTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDL 71
+TG G +L E L+ + S + + I + DL
Sbjct: 6 ITGITGQDGSYLTEFLLGKGYEVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLHYADL 65
Query: 72 RHKAQVLQALQGAEVVFHM-----AAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRL 126
+ + + + + + S V G +++A +
Sbjct: 66 TDASSLRRWIDVIKPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHTIDSG 125
Query: 127 IYTSSPSVVFDGVHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANGTNGLLTCCIRP 186
+ G ++ P Y+A+K + GL C
Sbjct: 126 RTVKYYQAGSSEMFGSTPPPQSETTPFHPRSPYAASKCAAHWYTVNYREAYGLFACNGIL 185
Query: 187 SSIFGPGDRL-----LVPSLVAAARAGKSKFII-GDGNNVYDFTYVANVAHAHICAERAL 240
+ P + + + G + G+ D+ + + A
Sbjct: 186 FNHESPRRGENFVTRKITRALGRIKVGLQTKLFLGNLQASRDWGFAGDYVEAMWL----- 240
Query: 241 ASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELT 300
++ K ++V EG + ++ + VE+
Sbjct: 241 ------------------MLQQEKPDDYVVATEEGHTVEEFLDVSFGYLGLNWKDYVEID 282
Query: 301 YRLLGPYGMKVPQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSY-SHL 359
R P+ V L D SKAK++LG+ P V E+ +K VD
Sbjct: 283 QR----------YFRPAEVDNLQG----DASKAKEVLGWKPQVGFEKLVKMMVDEDLELA 328
Query: 360 RAENQLKRVG 369
+ E L G
Sbjct: 329 KREKVLVDAG 338
|
| >d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]} Length = 346 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Human (Homo sapiens) [TaxId: 9606]
Score = 87.8 bits (216), Expect = 1e-19
Identities = 50/365 (13%), Positives = 114/365 (31%), Gaps = 54/365 (14%)
Query: 12 VTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILG-EALRSGRAHYVSFD 70
VTGG G+ H V L+ V I + ++ + + + L + D
Sbjct: 7 VTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFEEMD 66
Query: 71 LRHKAQVLQALQGAEVVFHM-----AAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKR 125
+ + + + + + + A S+ ++ VN+ GT +++ VK
Sbjct: 67 ILDQGALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHGVKN 126
Query: 126 LIYTSSPSVVFDGVHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANGTNGLLTCCI- 184
L+++SS +V + + ++ + Y +K E ++ + +
Sbjct: 127 LVFSSSATVYGNPQYLPLDEA---HPTGGCTNPYGKSKFFIEEMIRDLCQADKTWNAVLL 183
Query: 185 RPSSIFGPGD------------RLLVPSLVAAARAGKSKFII-GDGNNVYDFTYVANVAH 231
R + G L+P + A + + G+ + D T V + H
Sbjct: 184 RYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDYDTEDGTGVRDYIH 243
Query: 232 AHICAERALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMM 291
A+ +A+ + E+ + Y + + V + + G + P +
Sbjct: 244 VVDLAKGHIAALRKLKEQCGCRIYNLGTGTGYSVLQMVQAMEKASGKKIPYKVVA----- 298
Query: 292 PIAHMVELTYRLLGPYGMKVPQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKR 351
V + S A++ LG+ + L+ +
Sbjct: 299 ----------------------RREGDVAACYA----NPSLAQEELGWTAALGLDRMCED 332
Query: 352 TVDSY 356
Sbjct: 333 LWRWQ 337
|
| >d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]} Length = 342 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Polymyxin resistance protein ArnA (PrmI) species: Escherichia coli [TaxId: 562]
Score = 80.0 bits (195), Expect = 5e-17
Identities = 52/364 (14%), Positives = 96/364 (26%), Gaps = 51/364 (14%)
Query: 11 VVTGGRGFAARHLVEMLIRYDMFSVRIAD-LSDSIALEPHEEQGILGEALRSGRAHYVSF 69
++ G GF HL E L+R D + V D SD+I+ L H+V
Sbjct: 4 LILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAIS-----------RFLNHPHFHFVEG 52
Query: 70 DLRHKAQVLQAL------QGAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKV 123
D+ ++ ++ V + ++
Sbjct: 53 DISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRI 112
Query: 124 KRLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANGTNGLLTC- 182
+ + D + N + K YS +K + ++ GL
Sbjct: 113 IFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTL 172
Query: 183 ---------CIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAH 233
+ + G + L+ G +I G FT + + A
Sbjct: 173 FRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEAL 232
Query: 234 ICAERALASEVTVAEKAAGQAYFVTNMES-IKFWEFVSLILEGLGYQRPRIKIPAFVMMP 292
+ G+ + N E+ E ++L R P F
Sbjct: 233 YRIIE------NAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFR 286
Query: 293 IAHMVELTYRLLGPYGMKVPQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRT 352
+ + V P A L + P + ++E I T
Sbjct: 287 VVESSSYYGKGYQ----DVEHRKP------------SIRNAHRCLDWEPKIDMQETIDET 330
Query: 353 VDSY 356
+D +
Sbjct: 331 LDFF 334
|
| >d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]} Length = 383 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Trypanosoma brucei [TaxId: 5691]
Score = 78.7 bits (192), Expect = 2e-16
Identities = 60/395 (15%), Positives = 115/395 (29%), Gaps = 85/395 (21%)
Query: 12 VTGGRGFAARHLVEMLIRYDMFSVRIAD-LSDSIALEPH-----------EEQGILGEAL 59
V GG G+ H V L+R SV I D L + H ++
Sbjct: 7 VCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPW 66
Query: 60 RSGRAHYVSFDLRHKAQVLQALQGAEVV------FHMAAPNSSINNHKLHHSVNVEGTKN 113
A D+R++ + + A S+ + ++ NV G
Sbjct: 67 ADRYAALEVGDVRNEDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGILR 126
Query: 114 VIDACAELKVKRLIYTSSPSVVFDGVHGIINGNEALPYPPKH---NDFYSATKAEGEALV 170
++ A K ++I++SS ++ + G ++ N Y +K E ++
Sbjct: 127 LLQAMLLHKCDKIIFSSSAAIFGNPTMGSVSTNAEPIDINAKKSPESPYGESKLIAERMI 186
Query: 171 IKANGTNGLLTCCIRPSSIFGPGDRL-----------LVPSLVAAARAGKSK-------- 211
G+ C+R + G + L+P ++ + +
Sbjct: 187 RDCAEAYGIKGICLRYFNACGAHEDGDIGEHYQGSTHLIPIILGRVMSDIAPDQRLTIHE 246
Query: 212 --------------FIIGDGNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFV 257
+ DG V D+ +V ++A AHI A + + + +
Sbjct: 247 DASTDKRMPIFGTDYPTPDGTCVRDYVHVCDLASAHILALDYVEKLGPNDKSKYFSVFNL 306
Query: 258 TNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELTYRLLGPYGMKVPQLTPS 317
E + + + G+ P +
Sbjct: 307 GTSRGYSVREVIEVARKTTGHPIPVRECG---------------------------RREG 339
Query: 318 RVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRT 352
L KA+++LG+ P E I T
Sbjct: 340 DPAYLVA----ASDKAREVLGWKPKYDTLEAIMET 370
|
| >d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} Length = 342 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Aldehyde reductase II species: Sporobolomyces salmonicolor [TaxId: 5005]
Score = 71.8 bits (174), Expect = 3e-14
Identities = 63/368 (17%), Positives = 99/368 (26%), Gaps = 66/368 (17%)
Query: 12 VTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDL 71
VTG GF A H+VE L+ + + VR S S + Q V D+
Sbjct: 16 VTGANGFVASHVVEQLLEHG-YKVRGTARSAS---KLANLQKRWDAKYPGRFETAVVEDM 71
Query: 72 RHKAQVLQALQGAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDAC-AELKVKRLIYTS 130
+ + ++GA V H+A+ S N + + + GT N + A A VKR + TS
Sbjct: 72 LKQGAYDEVIKGAAGVAHIASVVSFSNKYDEVVTPAIGGTLNALRAAAATPSVKRFVLTS 131
Query: 131 SPSVVFDGVHGIINGNEALPY----------------PPKHNDFYSATKAEGEALVIKAN 174
S + P K Y+A+K E E K
Sbjct: 132 STVSALIPKPNVEGIYLDEKSWNLESIDKAKTLPESDPQKSLWVYAASKTEAELAAWKFM 191
Query: 175 GTNGLLTCCIRPSS------IFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVAN 228
N IF P + S + + +
Sbjct: 192 DENKPHFTLNAVLPNYTIGTIFDPETQSGSTSGWMMSLFNGEVSPALALMPPQYYVSAVD 251
Query: 229 VAHAHICAERALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAF 288
+ H+ + + + ++ + P
Sbjct: 252 IGLLHLGCLVL---------PQIERRRVYGTAGTFDWNTVLATFRK---------LYP-- 291
Query: 289 VMMPIAHMVELTYRLLGPYGMKVPQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEG 348
P P + + LS T + LG +EE
Sbjct: 292 -------------------SKTFPADFPDQGQDLSKFDTAPSLEILKSLGRPGWRSIEES 332
Query: 349 IKRTVDSY 356
IK V S
Sbjct: 333 IKDLVGSE 340
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} Length = 312 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Score = 70.6 bits (171), Expect = 5e-14
Identities = 43/345 (12%), Positives = 97/345 (28%), Gaps = 41/345 (11%)
Query: 11 VVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFD 70
++ GG G+ + +V I + + ++ + + + A +
Sbjct: 7 LIVGGTGYIGKRIVNASISLG-HPTYVLFRPEVVSNIDKVQ---MLLYFKQLGAKLIEAS 62
Query: 71 LRHKAQVLQALQGAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTS 130
L +++ AL+ +VV S ++ +++A E + S
Sbjct: 63 LDDHQRLVDALKQVDVVISAL--------AGGVLSHHILEQLKLVEAIKEAGNIKRFLPS 114
Query: 131 SPSVVFDGVHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANGTNGLLTCCIRPSSIF 190
+ P +H + + V +A + + +
Sbjct: 115 EFGMD--------------PDIMEHALQPGSITFIDKRKVRRAIEAASIPYTYVSSNMFA 160
Query: 191 GPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICAERALASEVTVAEKA 250
G L I GDGN + +V I + + +
Sbjct: 161 GYFAGSLAQLDGHMMPPRDKVLIYGDGNVKGIWVDEDDVGTYTIKS-------IDDPQTL 213
Query: 251 AGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELTYRLLGPYGMK 310
Y M + E + + +I I + +A M + +Y +
Sbjct: 214 NKTMYIRPPMNILSQKEVIQIWERLSEQNLDKIYISSQDF--LADMKDKSY----EEKIV 267
Query: 311 VPQLTPSRVRLLSCSRTFDCS--KAKDLLGYMPIVPLEEGIKRTV 353
L R + + +A L + V ++ ++R V
Sbjct: 268 RCHLYQIFFRGDLYNFEIGPNAIEATKLYPEVKYVTMDSYLERYV 312
|
| >d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} Length = 356 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-glucose-4,6-dehydratase species: Yersinia pseudotuberculosis [TaxId: 633]
Score = 64.5 bits (155), Expect = 6e-12
Identities = 55/361 (15%), Positives = 105/361 (29%), Gaps = 57/361 (15%)
Query: 12 VTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDL 71
VTG GF L L +V+ L+ + A + D+
Sbjct: 13 VTGHTGFKGGWLSLWLQTMG-ATVKGYSLTAP------TVPSLFETARVADGMQSEIGDI 65
Query: 72 RHKAQVLQALQGAEVVFHMAAPNS-----SINNHKLHHSVNVEGTKNVIDACAELKVKRL 126
R + ++L++++ + S + +S NV GT +++A + +
Sbjct: 66 RDQNKLLESIREFQPEIVFHMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGGVKA 125
Query: 127 IYTSSPSVVFDGVHGIINGNEAL------PYPPKHNDFYSATKAEGEALVIKAN-GTNGL 179
+ + +D I E PY T + + AN G +G
Sbjct: 126 VVNITSDKCYDNKEWIWGYRENEAMGGYDPYSNSKGCAELVTSSYRNSFFNPANYGQHGT 185
Query: 180 LTCCIRPSSIFGPGDRL--LVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICAE 237
+R ++ G GD + + A II + + + + +V ++
Sbjct: 186 AVATVRAGNVIGGGDWALDRIVPDILRAFEQSQPVIIRNPHAIRPWQHVLEPLSGYLL-- 243
Query: 238 RALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMV 297
+ + + P+ ++V
Sbjct: 244 ---------------------LAQKLYTDGAEY-------AEGWNFGPNDADATPVKNIV 275
Query: 298 ELTYRLLGPYGMK--VPQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDS 355
E + G P L DCSKAK LG+ P L ++ V
Sbjct: 276 EQMVKYWGEGASWQLDGNAHPHEAHYLKL----DCSKAKMQLGWHPRWNLNTTLEYIVGW 331
Query: 356 Y 356
+
Sbjct: 332 H 332
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} Length = 307 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Score = 62.1 bits (149), Expect = 3e-11
Identities = 46/351 (13%), Positives = 101/351 (28%), Gaps = 58/351 (16%)
Query: 11 VVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFD 70
++ G G+ RH+ + + + + + + Q + E+ ++ A+ V
Sbjct: 7 LLIGATGYIGRHVAKASLDLG-HPTFLLVRESTASSNSEKAQLL--ESFKASGANIVHGS 63
Query: 71 LRHKAQVLQALQGAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTS 130
+ A +++A++ +VV + + A E+ + + S
Sbjct: 64 IDDHASLVEAVKNVDVVISTVGSLQIESQVNIIK------------AIKEVGTVKRFFPS 111
Query: 131 SPSVVFDGVHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANGTNGLLTCCIRPSSIF 190
D VH + K A G+ + +
Sbjct: 112 EFGNDVDNVHAVEPAKSVFEVKAKVRRAIEA---------------EGIPYTYVSSNCFA 156
Query: 191 GPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICAERALASEVTVAEKA 250
G R + A I+GDGN F ++ I A V
Sbjct: 157 GYFLR-SLAQAGLTAPPRDKVVILGDGNARVVFVKEEDIGTFTIKA-------VDDPRTL 208
Query: 251 AGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIP--------AFVMMPIAHMVELTYR 302
Y ++ E V+L + + + +P A P + +++
Sbjct: 209 NKTLYLRLPANTLSLNELVALWEKKIDKTLEKAYVPEEEVLKLIADTPFPANISIAISHS 268
Query: 303 LLGPYGMKVPQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTV 353
+ ++ P+ V +A L + ++E + V
Sbjct: 269 IFVKGDQTNFEIGPAGV------------EASQLYPDVKYTTVDEYLSNFV 307
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 205 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.4 bits (132), Expect = 2e-09
Identities = 32/248 (12%), Positives = 69/248 (27%), Gaps = 52/248 (20%)
Query: 11 VVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFD 70
+ G G + ++ + V + S AH V D
Sbjct: 7 AIFGATGQTGLTTLAQAVQAG-YEVTVLVRDSSRLPSEGPR-----------PAHVVVGD 54
Query: 71 LRHKAQVLQALQGAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTS 130
+ A V + + G + V + + ++ +V EG +N++ A V +++ +
Sbjct: 55 VLQAADVDKTVAGQDAVIVLLGTRNDLS----PTTVMSEGARNIVAAMKAHGVDKVVACT 110
Query: 131 SPSVVFDGVHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANGTNGLLTCCIRPSSIF 190
S + + P + K +GL + P I
Sbjct: 111 S---------AFLLWDPTKVPPRLQAVTDDHIRMH------KVLRESGLKYVAVMPPHIG 155
Query: 191 GPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICAERALASEVTVAEKA 250
G + DG ++ H + R L + ++
Sbjct: 156 D------------QPLTGA-YTVTLDGRGPSRVISKHDLGHFML---RCLTT-----DEY 194
Query: 251 AGQAYFVT 258
G + + +
Sbjct: 195 DGHSTYPS 202
|
| >d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 393 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sulfolipid biosynthesis protein SQD1 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 52.3 bits (123), Expect = 6e-08
Identities = 35/375 (9%), Positives = 90/375 (24%), Gaps = 16/375 (4%)
Query: 12 VTGGRGFAARHLVEMLIR-------YDMFSVRIAD----LSDSIALEPHEEQGILGEALR 60
V GG G+ L + D R+ D L + ++ +AL
Sbjct: 6 VIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALT 65
Query: 61 SGRAHYVSFDLRHKAQVLQALQGAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAE 120
D+ + ++ + E + + + T++
Sbjct: 66 GKSIELYVGDICDFEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTL 125
Query: 121 LKVKRLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANGTNGLL 180
+ + + G + + + + +A+ L
Sbjct: 126 NVLFAIKEFGEECHLVKLGTMGEYGTPNIDIEEGYITITHNGRTDTLPYPKQASSFYHLS 185
Query: 181 TC-CIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICAERA 239
+ + L G + + V +
Sbjct: 186 KVHDSHNIAFTCKAWGIRATDLNQGVVYGVKTDETEMHEELRNRLDYDAVFGTALNRFCV 245
Query: 240 LASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFV-MMPIAHMVE 298
A+ ++ + V + + F + +
Sbjct: 246 QAAVGHPLTVYGKGGQTRGYLDIRDTVQCVEIAIANPAKAGEFRVFNQFTEQFSVNELAS 305
Query: 299 LTYRLLGPYGMKVPQLTPSRVRLLSCSRTF--DCSKAKDLLGYMPIVPLEEGIKRTVDSY 356
L + G+ V ++T R+ + + +K +L G P + + ++
Sbjct: 306 LVTKAGSKLGLDVKKMTVPNPRVEAEEHYYNAKHTKLMEL-GLEPHYLSDSLLDSLLNFA 364
Query: 357 SHLRAENQLKRVGPS 371
+ K++ PS
Sbjct: 365 VQFKDRVDTKQIMPS 379
|
| >d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} Length = 350 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Negative transcriptional regulator NmrA species: Aspergillus nidulans [TaxId: 162425]
Score = 51.2 bits (121), Expect = 1e-07
Identities = 31/299 (10%), Positives = 72/299 (24%), Gaps = 43/299 (14%)
Query: 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRA 64
+ ++ V G G L+ + VR A + I E
Sbjct: 1 QQKKTIAVVGATGRQGASLIRVAAAVG-HHVR--------AQVHSLKGLIAEELQAIPNV 51
Query: 65 HYVSFDLRHKAQVL-QALQGAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKV 123
L + ++ +GA + F + K++ DA
Sbjct: 52 TLFQGPLLNNVPLMDTLFEGAHLAFINTTS---------QAGDEIAIGKDLADAAKRAGT 102
Query: 124 KRLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANGTNGLLTCC 183
+ SS + + + + V GL +
Sbjct: 103 IQHYIYSSMPDHSL-----------------YGPWPAVPMWAPKFTVENYVRQLGLPSTF 145
Query: 184 IRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICAERALASE 243
+ L P + + ++ +
Sbjct: 146 VYAGIYNNNFTSLPYPLFQMELMPDGTFEWHAPFDPDIPLPWLDAEHDVGPALLQIFKDG 205
Query: 244 VTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVM---MPIAHMVEL 299
+K G +T E++ + + L + +++P + +P+ + +L
Sbjct: 206 ---PQKWNGHRIALTF-ETLSPVQVCAAFSRALNRRVTYVQVPKVEIKVNIPVGYREQL 260
|
| >d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 252 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein At5g02240 (T7H20 290) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 46.4 bits (108), Expect = 3e-06
Identities = 28/253 (11%), Positives = 55/253 (21%), Gaps = 26/253 (10%)
Query: 11 VVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFD 70
+VTG G + + + L L S +
Sbjct: 7 LVTGASGRTGQIVYKKLKEGS-DKFVAKGLVRSAQGKEKIGGEA--------DVFIGDIT 57
Query: 71 LRHKAQVLQALQGAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTS 130
A V+ A P ++ + +
Sbjct: 58 DADSINPAFQGIDALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQID 117
Query: 131 SPSVVFDGVHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANGTNGLLTCCIRPSSIF 190
+ V ++ N + + + +G IR +
Sbjct: 118 AAKVAGVKHIVVVGSMGGTNPDHPLNKLGNGNILVWKRKAEQYLADSGTPYTIIRAGGLL 177
Query: 191 GPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICAERALASEVTVAEKA 250
V GK ++ A+VA I +AL E+A
Sbjct: 178 DKEGG------VRELLVGKDDELLQTDTK---TVPRADVAEVCI---QALLF-----EEA 220
Query: 251 AGQAYFVTNMESI 263
+A+ + +
Sbjct: 221 KNKAFDLGSKPEG 233
|
| >d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]} Length = 307 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: ADP-L-glycero-D-mannoheptose 6-epimerase species: Escherichia coli [TaxId: 562]
Score = 45.8 bits (106), Expect = 6e-06
Identities = 7/68 (10%), Positives = 20/68 (29%), Gaps = 3/68 (4%)
Query: 290 MMPIAHMVELTYRLLGPYGMKVPQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGI 349
+A ++ + P R + + + D + + P + EG+
Sbjct: 243 FQAVADATLAYHKKGQIEYIPFPDKLKGRYQAFTQA---DLTNLRAAGYDKPFKTVAEGV 299
Query: 350 KRTVDSYS 357
+ +
Sbjct: 300 TEYMAWLN 307
|
| >d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: DTDP-4-dehydrorhamnose reductase RfbD species: Clostridium acetobutylicum [TaxId: 1488]
Score = 44.8 bits (104), Expect = 1e-05
Identities = 34/348 (9%), Positives = 76/348 (21%), Gaps = 75/348 (21%)
Query: 11 VVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFD 70
++TG G R + + L + V D+ D D
Sbjct: 5 LITGANGQLGREIQKQLKGKN-VEVIPTDVQD--------------------------LD 37
Query: 71 LRHKAQVLQALQ--GAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIY 128
+ + V + VV + AA + + + + A
Sbjct: 38 ITNVLAVNKFFNEKKPNVVINCAAHTAVDKCEEQYDLAYKINAIGPKNLAAAAYSVGAEI 97
Query: 129 TSSPSVVFDGVHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANGTNGLLTCCIRPSS 188
+ E P+ + + E +R +
Sbjct: 98 VQISTDYVFDGEAKEPITEFDEVNPQSAYGKTKLEGE------NFVKALNPKYYIVRTAW 151
Query: 189 IFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICAERALASEVTVAE 248
++G G+ + + + V T ++A + +
Sbjct: 152 LYGDGNNFVKTM---INLGKTHDELKVVHDQVGTPTSTVDLARVVLKVI----------D 198
Query: 249 KAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELTYRLLGPYG 308
+ + T +++F I G +
Sbjct: 199 EKNYGTFHCTCKGICSWYDFAVEIFRLTGIDVKVTPCTT-----------------EEFP 241
Query: 309 MKVPQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSY 356
+ P L + G + +E +K +D
Sbjct: 242 RPAKR--PKYSVL-------RNYMLELTTGDITR-EWKESLKEYIDLL 279
|
| >d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]} Length = 298 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) species: Salmonella enterica serovar typhimurium [TaxId: 90371]
Score = 38.4 bits (87), Expect = 0.001
Identities = 40/346 (11%), Positives = 98/346 (28%), Gaps = 60/346 (17%)
Query: 11 VVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFD 70
++ G G L L A + + IAL+ H + D
Sbjct: 4 LLFGKTGQVGWELQRSL----------APVGNLIALDVHSK--------------EFCGD 39
Query: 71 LRHKAQVLQALQG--AEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIY 128
+ V + ++ +V+ + + + + + +++A + + +
Sbjct: 40 FSNPKGVAETVRKLRPDVIVNA------AAHTAVDKAESEPELAQLLNATSVEAIAKAAN 93
Query: 129 TSSPSVVFDGVHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANGTNGLLTCCIRPSS 188
+ VV + G +P+ + + KA N R S
Sbjct: 94 ETGAWVVHYSTDYVFPGTGDIPWQETDATSPLNVYGKTKLAGEKALQDNCPKHLIFRTSW 153
Query: 189 IFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICAERALASEVTVAE 248
++ +++ A+ ++ +I D + AH V + +
Sbjct: 154 VYAGKGNNFAKTMLRLAKERQTLSVINDQYGAPTGAELLADCTAHAI-------RVALNK 206
Query: 249 KAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELTYRLLGPYG 308
Y + + + ++ +L+ + + + +P + R
Sbjct: 207 PEVAGLYHLVAGGTTTWHDYAALVFDEARKAGITLALTELNAVPTSAYPTPASR------ 260
Query: 309 MKVPQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVD 354
P RL + K + + E G+KR +
Sbjct: 261 -------PGNSRL-------NTEKFQRNFDLIL-PQWELGVKRMLT 291
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 485 | |||
| d1r6da_ | 322 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces | 100.0 | |
| d1kewa_ | 361 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 100.0 | |
| d2b69a1 | 312 | UDP-glucuronate decarboxylase 1 {Human (Homo sapie | 100.0 | |
| d1db3a_ | 357 | GDP-mannose 4,6-dehydratase {Escherichia coli [Tax | 100.0 | |
| d1udca_ | 338 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 100.0 | |
| d2c5aa1 | 363 | GDP-mannose-3', 5'-epimerase {Thale cress (Arabido | 100.0 | |
| d1sb8a_ | 341 | UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo | 100.0 | |
| d2blla1 | 342 | Polymyxin resistance protein ArnA (PrmI) {Escheric | 100.0 | |
| d1oc2a_ | 346 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 100.0 | |
| d1ek6a_ | 346 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 100.0 | |
| d1rpna_ | 321 | GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos | 100.0 | |
| d1z45a2 | 347 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 100.0 | |
| d1t2aa_ | 347 | GDP-mannose 4,6-dehydratase {Human (Homo sapiens) | 100.0 | |
| d1i24a_ | 393 | Sulfolipid biosynthesis protein SQD1 {Thale cress | 100.0 | |
| d1gy8a_ | 383 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 100.0 | |
| d1e6ua_ | 315 | GDP-4-keto-6-deoxy-d-mannose epimerase/reductase ( | 100.0 | |
| d1orra_ | 338 | CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: | 100.0 | |
| d1n7ha_ | 339 | GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop | 100.0 | |
| d1rkxa_ | 356 | CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc | 100.0 | |
| d1y1pa1 | 342 | Aldehyde reductase II {Sporobolomyces salmonicolor | 100.0 | |
| d1eq2a_ | 307 | ADP-L-glycero-D-mannoheptose 6-epimerase {Escheric | 100.0 | |
| d1vl0a_ | 281 | DTDP-4-dehydrorhamnose reductase RfbD {Clostridium | 100.0 | |
| d1n2sa_ | 298 | dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S | 99.98 | |
| d1qyda_ | 312 | Pinoresinol-lariciresinol reductase {Giant arborvi | 99.96 | |
| d1hdoa_ | 205 | Biliverdin IX beta reductase {Human (Homo sapiens) | 99.95 | |
| d1qyca_ | 307 | Phenylcoumaran benzylic ether reductase {Loblolly | 99.95 | |
| d2bkaa1 | 232 | TAT-interacting protein TIP30 {Human (Homo sapiens | 99.95 | |
| d2a35a1 | 212 | Hypothetical protein PA4017 {Pseudomonas aeruginos | 99.92 | |
| d2q46a1 | 252 | Hypothetical protein At5g02240 (T7H20_290) {Thale | 99.92 | |
| d1xgka_ | 350 | Negative transcriptional regulator NmrA {Aspergill | 99.91 | |
| d1uzma1 | 237 | beta-keto acyl carrier protein reductase {Mycobact | 99.77 | |
| d1ulsa_ | 242 | beta-keto acyl carrier protein reductase {Thermus | 99.76 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 99.75 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 99.74 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 99.74 | |
| d2d1ya1 | 248 | Hypothetical protein TTHA0369 {Thermus thermophilu | 99.73 | |
| d1nffa_ | 244 | Putative oxidoreductase Rv2002 {Mycobacterium tube | 99.73 | |
| d1x1ta1 | 260 | D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas | 99.72 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 99.72 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 99.72 | |
| d2ew8a1 | 247 | (s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb | 99.72 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 99.72 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 99.71 | |
| d1hdca_ | 254 | 3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre | 99.71 | |
| d1geea_ | 261 | Glucose dehydrogenase {Bacillus megaterium [TaxId: | 99.71 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 99.71 | |
| d1ydea1 | 250 | Retinal dehydrogenase/reductase 3 {Human (Homo sap | 99.7 | |
| d1k2wa_ | 256 | Sorbitol dehydrogenase {Rhodobacter sphaeroides [T | 99.7 | |
| d2rhca1 | 257 | beta-keto acyl carrier protein reductase {Streptom | 99.7 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 99.69 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 99.69 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 99.68 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 99.68 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 99.68 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 99.68 | |
| d1edoa_ | 244 | beta-keto acyl carrier protein reductase {Oil seed | 99.67 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 99.67 | |
| d1yxma1 | 297 | Peroxisomal trans 2-enoyl CoA reductase {Human (Ho | 99.67 | |
| d2a4ka1 | 241 | beta-keto acyl carrier protein reductase {Thermus | 99.67 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 99.66 | |
| d1o5ia_ | 234 | beta-keto acyl carrier protein reductase {Thermoto | 99.66 | |
| d1hxha_ | 253 | 3beta/17beta hydroxysteroid dehydrogenase {Comamon | 99.66 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 99.65 | |
| d1ulua_ | 256 | Enoyl-ACP reductase {Thermus thermophilus [TaxId: | 99.65 | |
| d1spxa_ | 264 | Glucose dehydrogenase (5l265) {Nematode (Caenorhab | 99.64 | |
| d2ag5a1 | 245 | Dehydrogenase/reductase SDR family member 6, DHRS6 | 99.63 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 99.63 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 99.62 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 99.61 | |
| d1sbya1 | 254 | Drosophila alcohol dehydrogenase {Fly (Drosophila | 99.59 | |
| d2bd0a1 | 240 | Bacterial sepiapterin reductase {Chlorobium tepidu | 99.59 | |
| d1bdba_ | 276 | Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps | 99.59 | |
| d1gz6a_ | 302 | (3R)-hydroxyacyl-CoA dehydrogenase domain of estra | 99.58 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 99.58 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 99.57 | |
| d1zmta1 | 252 | Halohydrin dehalogenase HheC {Agrobacterium tumefa | 99.57 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 99.57 | |
| d2fr1a1 | 259 | Erythromycin synthase, eryAI, 1st ketoreductase mo | 99.57 | |
| d1oaaa_ | 259 | Sepiapterin reductase {Mouse (Mus musculus) [TaxId | 99.55 | |
| d1snya_ | 248 | Carbonyl reductase sniffer {Fruit fly (Drosophila | 99.55 | |
| d1yo6a1 | 250 | Putative carbonyl reductase sniffer {Caenorhabditi | 99.54 | |
| d2o23a1 | 248 | Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho | 99.53 | |
| d1dhra_ | 236 | Dihydropteridin reductase (pteridine reductase) {R | 99.51 | |
| d1uaya_ | 241 | Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t | 99.48 | |
| d1jtva_ | 285 | Human estrogenic 17beta-hydroxysteroid dehydrogena | 99.46 | |
| d1qsga_ | 258 | Enoyl-ACP reductase {Escherichia coli [TaxId: 562] | 99.44 | |
| d1ooea_ | 235 | Dihydropteridin reductase (pteridine reductase) {N | 99.44 | |
| d1xu9a_ | 269 | 11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom | 99.38 | |
| d1e7wa_ | 284 | Dihydropteridin reductase (pteridine reductase) {L | 99.38 | |
| d2pd4a1 | 274 | Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2 | 99.36 | |
| d1wmaa1 | 275 | Carbonyl reductase/20beta-hydroxysteroid dehydroge | 99.36 | |
| d2h7ma1 | 268 | Enoyl-ACP reductase {Mycobacterium tuberculosis, T | 99.31 | |
| d1d7oa_ | 297 | Enoyl-ACP reductase {Oil seed rape (Brassica napus | 99.23 | |
| d1mxha_ | 266 | Dihydropteridin reductase (pteridine reductase) {T | 99.18 | |
| d1fjha_ | 257 | 3-alpha-hydroxysteroid dehydrogenase {Comamonas te | 99.13 | |
| d1uh5a_ | 329 | Enoyl-ACP reductase {Malaria parasite (Plasmodium | 99.11 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 98.85 | |
| d1mlda1 | 144 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 98.29 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 98.19 | |
| d1hyea1 | 145 | MJ0490, lactate/malate dehydrogenase {Archaeon Met | 97.91 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 97.86 | |
| d1o6za1 | 142 | Malate dehydrogenase {Archaeon Haloarcula marismor | 97.83 | |
| d2cmda1 | 145 | Malate dehydrogenase {Escherichia coli [TaxId: 562 | 97.78 | |
| d1pzga1 | 154 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 97.74 | |
| d1y7ta1 | 154 | Malate dehydrogenase {Thermus thermophilus [TaxId: | 97.72 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 97.65 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 97.63 | |
| d7mdha1 | 175 | Malate dehydrogenase {Sorghum (Sorghum vulgare), c | 97.63 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 97.52 | |
| d1guza1 | 142 | Malate dehydrogenase {Chlorobium vibrioforme [TaxI | 97.51 | |
| d1t4ba1 | 146 | Aspartate beta-semialdehyde dehydrogenase {Escheri | 97.48 | |
| d1y6ja1 | 142 | Lactate dehydrogenase {Clostridium thermocellum [T | 97.48 | |
| d1a5za1 | 140 | Lactate dehydrogenase {Thermotoga maritima [TaxId: | 97.45 | |
| d1ojua1 | 142 | Malate dehydrogenase {Archaeon Archaeoglobus fulgi | 97.33 | |
| d5mdha1 | 154 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 97.32 | |
| d1uxja1 | 142 | Malate dehydrogenase {Chloroflexus aurantiacus [Ta | 97.26 | |
| d1llda1 | 143 | Lactate dehydrogenase {Bifidobacterium longum, str | 97.17 | |
| d1t2da1 | 150 | Lactate dehydrogenase {Malaria parasite (Plasmodiu | 97.13 | |
| d2g17a1 | 179 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 97.1 | |
| d1i0za1 | 160 | Lactate dehydrogenase {Human (Homo sapiens), heart | 97.08 | |
| d1mb4a1 | 147 | Aspartate beta-semialdehyde dehydrogenase {Vibrio | 97.05 | |
| d2hjsa1 | 144 | Usg-1 protein homolog PA3116 {Pseudomonas aerugino | 96.9 | |
| d1jaya_ | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae | 96.79 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 96.74 | |
| d1hyha1 | 146 | L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La | 96.74 | |
| d2ldxa1 | 159 | Lactate dehydrogenase {Mouse (Mus musculus) [TaxId | 96.7 | |
| d1kjqa2 | 111 | Glycinamide ribonucleotide transformylase PurT, N- | 96.62 | |
| d1vi2a1 | 182 | Putative shikimate dehydrogenase YdiB {Escherichia | 96.57 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 96.54 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 96.53 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 96.52 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 96.42 | |
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 96.41 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 96.4 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 96.39 | |
| d1u7za_ | 223 | Coenzyme A biosynthesis bifunctional protein CoaBC | 96.39 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 96.34 | |
| d1vm6a3 | 128 | Dihydrodipicolinate reductase {Thermotoga maritima | 96.23 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 96.2 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 96.2 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 96.17 | |
| d2csua1 | 129 | Acetate-CoA ligase alpha chain, AcdA, N-terminal d | 96.07 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 96.01 | |
| d3cuma2 | 162 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 95.98 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 95.91 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 95.83 | |
| d1vkna1 | 176 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 95.65 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 95.64 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 95.49 | |
| d1ebda2 | 117 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 95.48 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 95.46 | |
| d2cvoa1 | 183 | Putative semialdehyde dehydrogenase {Rice (Oryza s | 95.44 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 95.43 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 95.39 | |
| d1h6va2 | 122 | Mammalian thioredoxin reductase {Rat (Rattus norve | 95.33 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 95.25 | |
| d1diha1 | 162 | Dihydrodipicolinate reductase {Escherichia coli [T | 95.25 | |
| d1o8ca2 | 77 | Hypothetical protein YhdH {Escherichia coli [TaxId | 95.22 | |
| d1v59a2 | 122 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 95.21 | |
| d2gz1a1 | 154 | Aspartate beta-semialdehyde dehydrogenase {Strepto | 95.18 | |
| d1vpda2 | 161 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 95.11 | |
| d3lada2 | 119 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 94.89 | |
| d1d7ya2 | 121 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 94.84 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 94.82 | |
| d1lvla2 | 115 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 94.73 | |
| d1nhpa2 | 123 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 94.65 | |
| d1onfa2 | 117 | Glutathione reductase {Plasmodium falciparum [TaxI | 94.63 | |
| d1yl7a1 | 135 | Dihydrodipicolinate reductase {Mycobacterium tuber | 94.32 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 94.24 | |
| d1gesa2 | 116 | Glutathione reductase {Escherichia coli [TaxId: 56 | 94.22 | |
| d1xhca2 | 122 | NADH oxidase /nitrite reductase {Pyrococcus furios | 94.12 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 94.12 | |
| d1qp8a1 | 181 | Putative formate dehydrogenase {Archaeon Pyrobacul | 94.1 | |
| d3grsa2 | 125 | Glutathione reductase {Human (Homo sapiens) [TaxId | 94.08 | |
| d1jw9b_ | 247 | Molybdenum cofactor biosynthesis protein MoeB {Esc | 94.06 | |
| d1ojta2 | 125 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 93.97 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 93.97 | |
| d1j6ua1 | 89 | UDP-N-acetylmuramate-alanine ligase MurC {Thermoto | 93.94 | |
| d1txga2 | 180 | Glycerol-3- phosphate dehydrogenase {Archaeoglobus | 93.93 | |
| d1dxla2 | 123 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 93.73 | |
| d1o89a2 | 177 | Hypothetical protein YhdH {Escherichia coli [TaxId | 93.58 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 93.58 | |
| d1n1ea2 | 189 | Glycerol-3- phosphate dehydrogenase {Trypanosome ( | 93.47 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 93.34 | |
| d1q1ra2 | 133 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 93.23 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 93.18 | |
| d1f06a1 | 170 | Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb | 93.08 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 93.07 | |
| d1yqga2 | 152 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 93.06 | |
| d2ahra2 | 152 | Pyrroline-5-carboxylate reductase ProC {Streptococ | 92.98 | |
| d1b0aa1 | 166 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 92.89 | |
| d1mo9a2 | 121 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 92.88 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 92.68 | |
| d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 92.62 | |
| d1a4ia1 | 170 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 92.6 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 92.59 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 92.57 | |
| d1a9xa3 | 127 | Carbamoyl phosphate synthetase (CPS), large subuni | 92.32 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 92.25 | |
| d1sc6a1 | 188 | Phosphoglycerate dehydrogenase {Escherichia coli [ | 92.02 | |
| d1edza1 | 171 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 91.82 | |
| d2d59a1 | 139 | Hypothetical protein PH1109 {Pyrococcus horikoshii | 91.78 | |
| d1kyqa1 | 150 | Bifunctional dehydrogenase/ferrochelatase Met8p, N | 91.76 | |
| d1yovb1 | 426 | UBA3 {Human (Homo sapiens) [TaxId: 9606]} | 91.35 | |
| d1y81a1 | 116 | Hypothetical protein PF0725 {Pyrococcus furiosus [ | 91.31 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 91.3 | |
| d1dxya1 | 199 | D-2-hydroxyisocaproate dehydrogenase {Lactobacillu | 91.21 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 91.1 | |
| d1c0pa1 | 268 | D-aminoacid oxidase, N-terminal domain {Rhodotorul | 90.96 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 90.89 | |
| d3etja2 | 78 | N5-carboxyaminoimidazole ribonucleotide synthetase | 90.79 | |
| d1i36a2 | 152 | Conserved hypothetical protein MTH1747 {Archaeon M | 90.42 | |
| d1pgja2 | 178 | 6-phosphogluconate dehydrogenase {Trypanosoma bruc | 90.41 | |
| d1p77a1 | 171 | Shikimate 5-dehydrogenase AroE {Haemophilus influe | 90.26 | |
| d1obba1 | 171 | Alpha-glucosidase AglA {Thermotoga maritima [TaxId | 89.98 | |
| d1j4aa1 | 197 | D-lactate dehydrogenase {Lactobacillus helveticus | 89.86 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 89.85 | |
| d2czca2 | 172 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 89.72 | |
| d1b7go1 | 178 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 89.64 | |
| d1tt7a2 | 167 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 89.48 | |
| d1gtea4 | 196 | Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su | 89.28 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 89.28 | |
| d1u8xx1 | 167 | Maltose-6'-phosphate glucosidase GlvA {Bacillus su | 89.12 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 88.83 | |
| d1feca2 | 117 | Trypanothione reductase {Crithidia fasciculata [Ta | 88.56 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 88.27 | |
| d1mx3a1 | 193 | Transcription corepressor CtbP {Human (Homo sapien | 88.22 | |
| d1a9xa4 | 121 | Carbamoyl phosphate synthetase (CPS), large subuni | 87.98 | |
| d1ps9a3 | 179 | 2,4-dienoyl-CoA reductase, middle domain {Escheric | 87.87 | |
| d2naca1 | 188 | Formate dehydrogenase {Pseudomonas sp., strain 101 | 87.72 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 87.56 | |
| d1aoga2 | 117 | Trypanothione reductase {Trypanosoma cruzi [TaxId: | 87.39 | |
| d1j5pa4 | 132 | Hypothetical protein TM1643 {Thermotoga maritima [ | 87.21 | |
| d1npya1 | 167 | Shikimate 5-dehydrogenase-like protein HI0607 {Hae | 87.01 | |
| d1djqa2 | 156 | Trimethylamine dehydrogenase, C-terminal domain {M | 86.76 | |
| d1yova1 | 529 | Amyloid beta precursor protein-binding protein 1, | 86.68 | |
| d1fcda1 | 186 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 86.32 | |
| d1cf2o1 | 171 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 85.97 | |
| d2gv8a2 | 107 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 85.82 | |
| d2bi7a1 | 314 | UDP-galactopyranose mutase, N-terminal domain {Kle | 85.8 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 85.79 | |
| d2voua1 | 265 | Dihydroxypyridine hydroxylase DhpH {Arthrobacter n | 85.58 | |
| d2dt5a2 | 126 | Transcriptional repressor Rex, C-terminal domain { | 85.42 | |
| d1gdha1 | 191 | D-glycerate dehydrogenase {Hyphomicrobium methylov | 85.39 | |
| d1dlja2 | 196 | UDP-glucose dehydrogenase (UDPGDH) {Streptococcus | 85.22 | |
| d2cvza2 | 156 | Hydroxyisobutyrate dehydrogenase {Thermus thermoph | 84.72 | |
| d1djqa3 | 233 | Trimethylamine dehydrogenase, middle domain {Methy | 84.52 | |
| d2iida1 | 370 | L-aminoacid oxidase {Malayan pit viper (Calloselas | 84.15 | |
| d1ygya1 | 184 | Phosphoglycerate dehydrogenase {Mycobacterium tube | 84.13 | |
| d1q0qa2 | 151 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase {E | 84.06 | |
| d2blna2 | 203 | Polymyxin resistance protein ArnA, N-terminal doma | 83.96 | |
| d2ivda1 | 347 | Protoporphyrinogen oxidase {Myxococcus xanthus [Ta | 83.08 | |
| d1li4a1 | 163 | S-adenosylhomocystein hydrolase {Human (Homo sapie | 82.93 | |
| d1seza1 | 373 | Protoporphyrinogen oxidase {Tobacco (Nicotiana tab | 82.45 | |
| d1ryia1 | 276 | Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | 82.45 | |
| d1hwxa1 | 293 | Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: | 82.43 | |
| d1m6ia2 | 137 | Apoptosis-inducing factor (AIF) {Human (Homo sapie | 82.04 | |
| d1r0ka2 | 150 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Z | 81.74 | |
| d1nhpa1 | 198 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 81.22 | |
| d1gu7a2 | 189 | 2,4-dienoyl-CoA reductase {Yeast (Candida tropical | 81.08 | |
| d2bcgg1 | 297 | Guanine nucleotide dissociation inhibitor, GDI {Ba | 81.06 | |
| d1fmta2 | 206 | Methionyl-tRNAfmet formyltransferase {Escherichia | 80.63 |
| >d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptomyces venezuelae [TaxId: 54571]
Probab=100.00 E-value=2.1e-46 Score=367.58 Aligned_cols=306 Identities=25% Similarity=0.322 Sum_probs=250.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCc-----eEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc
Q 047227 8 RLCVVTGGRGFAARHLVEMLIRYDMF-----SVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ 82 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~~G~~-----~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~ 82 (485)
|||||||||||||+++++.|+++|+. +|+.+|+...... .. .+.......+++++.+|+.+.........
T Consensus 1 MkIlItG~tGfIG~~l~~~L~~~g~~v~~~~~i~~~d~~~~~~~--~~---~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 75 (322)
T d1r6da_ 1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGN--RA---NLAPVDADPRLRFVHGDIRDAGLLARELR 75 (322)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECCCTTCC--GG---GGGGGTTCTTEEEEECCTTCHHHHHHHTT
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCCccCCceEEEEeCCCcccc--Hh---HhhhhhcCCCeEEEEeccccchhhhcccc
Confidence 68999999999999999999999952 3455554322111 01 12222345689999999999999999999
Q ss_pred CCCEEEEcCCCCC---CCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCccccccCCCCcCCCCCCCCCCCCCCchH
Q 047227 83 GAEVVFHMAAPNS---SINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDFY 159 (485)
Q Consensus 83 ~~d~Vih~aa~~~---~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy~~~~~~~~~~~e~~~~~~~~~~~Y 159 (485)
++|.|+|+|+... ...++...+++|+.|+.+++++|++.++++|||+||+++|++..... .+|+.| ..|.+.|
T Consensus 76 ~~d~vi~~a~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~I~~Ss~~~yg~~~~~~--~~E~~~--~~p~~~Y 151 (322)
T d1r6da_ 76 GVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVGRVVHVSTNQVYGSIDSGS--WTESSP--LEPNSPY 151 (322)
T ss_dssp TCCEEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHTTCCEEEEEEEGGGGCCCSSSC--BCTTSC--CCCCSHH
T ss_pred ccceEEeecccccccccccchHHHhhhhHHHHHHHHHHHHHcCCceEEEeecceeecCCCCCC--CCCCCC--CCCCCHH
Confidence 9999999998433 34467788999999999999999999999999999999997654433 355543 6789999
Q ss_pred HHHHHHHHHHHHHHhCCCCceEEEEecCCcccCCCC--CChHHHHHHHHcCCCeEEecCCCceeecccHHHHHHHHHHHH
Q 047227 160 SATKAEGEALVIKANGTNGLLTCCIRPSSIFGPGDR--LLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICAE 237 (485)
Q Consensus 160 ~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~--~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~D~a~a~~~~~ 237 (485)
+.+|..+|.+++.+.++++++++++||+++|||+++ .+++.++.++..|+++.++|+|++.++|+|++|+|+++..++
T Consensus 152 ~~sK~~~E~~~~~~~~~~~~~~~~lR~~~vyGp~~~~~~~i~~~i~~~~~~~~i~v~~~g~~~r~~i~v~D~a~ai~~~~ 231 (322)
T d1r6da_ 152 AASKAGSDLVARAYHRTYGLDVRITRCCNNYGPYQHPEKLIPLFVTNLLDGGTLPLYGDGANVREWVHTDDHCRGIALVL 231 (322)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCEEEEEECEEECTTCCTTSHHHHHHHHHHTTCCEEEETTSCCEEEEEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEEeeeEECcCCCcCcHHHHHHHHHHcCCCcEEecCCCeEEccEEHHHHHHHHHHHH
Confidence 999999999999999888999999999999999875 478999999999999999999999999999999999999998
Q ss_pred HHhccccchhhccCCcEEEeeCCCCccHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCCCCCCCCHH
Q 047227 238 RALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELTYRLLGPYGMKVPQLTPS 317 (485)
Q Consensus 238 ~~~~~~~~~~~~~~g~~ynv~~~~~~t~~el~~~i~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 317 (485)
+.. ..+++||+++++++++.|+++.+.+.+|.+.+.+.... ..+
T Consensus 232 ~~~---------~~~~~~ni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~----------------------~~~----- 275 (322)
T d1r6da_ 232 AGG---------RAGEIYHIGGGLELTNRELTGILLDSLGADWSSVRKVA----------------------DRK----- 275 (322)
T ss_dssp HHC---------CTTCEEEECCCCEEEHHHHHHHHHHHHTCCGGGEEEEC----------------------CCT-----
T ss_pred hCC---------CCCCeeEEeecccchhHHHHHHHHHHhCCCccceeecC----------------------CCC-----
Confidence 741 34789999999999999999999999998755432110 001
Q ss_pred HHHhhccceeeehhhHHhhcCCCCCCChHHHHHHHHHHHHHhHh
Q 047227 318 RVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSYSHLRA 361 (485)
Q Consensus 318 ~~~~~~~~~~~d~~ka~~~lG~~p~~~l~e~i~~~~~~~~~~~~ 361 (485)
.......+|++|+++.|||+|+++++|+|+++++||+++.+
T Consensus 276 ---~~~~~~~~d~~k~~~~lg~~p~~~~eegI~~~i~w~~~n~~ 316 (322)
T d1r6da_ 276 ---GHDLRYSLDGGKIERELGYRPQVSFADGLARTVRWYRENRG 316 (322)
T ss_dssp ---TCCCBCCBCCHHHHHHHCCCCCSCHHHHHHHHHHHHHHCHH
T ss_pred ---CCCceeeeCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHhHH
Confidence 00123457999999999999999999999999999998554
|
| >d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=100.00 E-value=4.6e-47 Score=378.03 Aligned_cols=317 Identities=25% Similarity=0.282 Sum_probs=247.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc--CCC
Q 047227 8 RLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ--GAE 85 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--~~d 85 (485)
|||||||||||||++|+++|+++|+..|.++++..... .. . .+......++++++.+|++|++.+.++++ ++|
T Consensus 1 MkILItG~tGfIGs~l~~~L~~~g~~vv~~~d~~~~~~-~~-~---~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~~d 75 (361)
T d1kewa_ 1 MKILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAG-NL-E---SLSDISESNRYNFEHADICDSAEITRIFEQYQPD 75 (361)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHHCSCEEEEEECCCTTC-CG-G---GGTTTTTCTTEEEEECCTTCHHHHHHHHHHHCCS
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCccc-cH-H---HHHhhhhcCCcEEEEccCCCHHHHHHHHHhCCCC
Confidence 68999999999999999999999976667777543211 11 1 13344456789999999999999999987 489
Q ss_pred EEEEcCCCCC---CCCchhhhHHHHHHHHHHHHHHHHhcC---------CCEEEEecCccccccCCCCcCCCCC-CC---
Q 047227 86 VVFHMAAPNS---SINNHKLHHSVNVEGTKNVIDACAELK---------VKRLIYTSSPSVVFDGVHGIINGNE-AL--- 149 (485)
Q Consensus 86 ~Vih~aa~~~---~~~~~~~~~~~nv~~t~~ll~a~~~~~---------v~r~V~~SS~~vy~~~~~~~~~~~e-~~--- 149 (485)
+|||+||... +..+|..++++|+.||.+++++|++.+ +++|||+||..|||+.......++. ..
T Consensus 76 ~VihlAa~~~~~~~~~~p~~~~~~N~~gt~nl~~~~~~~~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~~~~~~~~~~~ 155 (361)
T d1kewa_ 76 AVMHLAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLF 155 (361)
T ss_dssp EEEECCSCCCHHHHHHCTHHHHHHHTHHHHHHHHHHHHHHHTSCHHHHHHCEEEEEEEGGGGCCCCCGGGSCTTSCCCCB
T ss_pred EEEECccccchhhHHhCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCceEEEEeccceeeCCCccCCccccccCCCCc
Confidence 9999999433 334778899999999999999999864 4599999999999865433221111 00
Q ss_pred --CCCCCCCchHHHHHHHHHHHHHHHhCCCCceEEEEecCCcccCCCC--CChHHHHHHHHcCCCeEEecCCCceeeccc
Q 047227 150 --PYPPKHNDFYSATKAEGEALVIKANGTNGLLTCCIRPSSIFGPGDR--LLVPSLVAAARAGKSKFIIGDGNNVYDFTY 225 (485)
Q Consensus 150 --~~~~~~~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~--~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~ 225 (485)
..+..|.+.|+.+|.++|.+++.++++++++++++||+++|||++. .+++.++..+.+|+++.++|+|++.++|+|
T Consensus 156 ~e~~~~~p~s~Yg~sK~~~E~~~~~~~~~~~i~~~~lR~~~vyGp~~~~~~~i~~~i~~~~~g~~~~v~g~g~~~r~~i~ 235 (361)
T d1kewa_ 156 TETTAYAPSSPYSASKASSDHLVRAWRRTYGLPTIVTNCSNNYGPYHFPEKLIPLVILNALEGKPLPIYGKGDQIRDWLY 235 (361)
T ss_dssp CTTSCCCCCSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEESTTCCTTSHHHHHHHHHHHTCCEEEETTSCCEEEEEE
T ss_pred ccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCEEEEecCceECcCCCcCcHHHHHHHHHHcCCCcEEeCCCCeEEeCEE
Confidence 1145788999999999999999999889999999999999999874 468999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCCCccHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhC
Q 047227 226 VANVAHAHICAERALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELTYRLLG 305 (485)
Q Consensus 226 v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~~t~~el~~~i~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 305 (485)
++|+|+++..+++. ...+++|||++++++++.|+++.+.+.++...+........ .
T Consensus 236 v~D~a~ai~~~~~~---------~~~~~~~Ni~s~~~~s~~~~~~~i~~~~~~~~~~~~~~~~~--------------~- 291 (361)
T d1kewa_ 236 VEDHARALHMVVTE---------GKAGETYNIGGHNEKKNLDVVFTICDLLDEIVPKATSYREQ--------------I- 291 (361)
T ss_dssp HHHHHHHHHHHHHH---------CCTTCEEEECCCCEEEHHHHHHHHHHHHHHHSCCSSCGGGG--------------E-
T ss_pred HHHHHHHHHHHHhc---------CCCCCeEEECCCCCcchHHHHhHhhhhcccccccccCcccc--------------e-
Confidence 99999999999873 13467999999999999999999988776543321110000 0
Q ss_pred CCCCCCCCCCHHHHHhhccceeeehhhHHhhcCCCCCCChHHHHHHHHHHHHHhHh
Q 047227 306 PYGMKVPQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSYSHLRA 361 (485)
Q Consensus 306 ~~~~~~p~~~~~~~~~~~~~~~~d~~ka~~~lG~~p~~~l~e~i~~~~~~~~~~~~ 361 (485)
......| . ....+..|++|+++.|||+|.++++|+|++|++||++..+
T Consensus 292 ~~~~~~~----~----~~~~~~~d~~k~~~~lgw~P~~~l~e~i~~ti~w~~~n~~ 339 (361)
T d1kewa_ 292 TYVADRP----G----HDRRYAIDAGKISRELGWKPLETFESGIRKTVEWYLANTQ 339 (361)
T ss_dssp EEECCCT----T----CCCBCCBCCHHHHHHHCCCCSCCHHHHHHHHHHHHHHCHH
T ss_pred eecCCCC----C----CCceeeeCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHhHH
Confidence 0000001 0 1123457999999999999999999999999999988654
|
| >d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-glucuronate decarboxylase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.4e-47 Score=372.61 Aligned_cols=301 Identities=21% Similarity=0.276 Sum_probs=241.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCCCE
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGAEV 86 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~d~ 86 (485)
.||||||||+||||++++++|+++| ++|+++++..+... .. +........++....|+.+ .++.++|+
T Consensus 1 kKKIlVtG~sGfiG~~lv~~L~~~g-~~V~~~d~~~~~~~---~~---~~~~~~~~~~d~~~~~~~~-----~~~~~~d~ 68 (312)
T d2b69a1 1 RKRILITGGAGFVGSHLTDKLMMDG-HEVTVVDNFFTGRK---RN---VEHWIGHENFELINHDVVE-----PLYIEVDQ 68 (312)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCSSCCG---GG---TGGGTTCTTEEEEECCTTS-----CCCCCCSE
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCc-CEEEEEeCCCcCCH---HH---HHHhcCCCceEEEehHHHH-----HHHcCCCE
Confidence 3799999999999999999999999 58999987432111 11 2222334456666666544 45678999
Q ss_pred EEEcCCCCC---CCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCccccccCCCCcCCCCCCC-CCCCCCCchHHHH
Q 047227 87 VFHMAAPNS---SINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVVFDGVHGIINGNEAL-PYPPKHNDFYSAT 162 (485)
Q Consensus 87 Vih~aa~~~---~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy~~~~~~~~~~~e~~-~~~~~~~~~Y~~s 162 (485)
|||+|+... +..++...+++|+.|+.+|+++|++.++ |+||+||.+||++.......++... ..|..|.++|+.+
T Consensus 69 VihlAa~~~~~~~~~~~~~~~~~Nv~g~~~ll~~~~~~~~-k~I~~SS~~vy~~~~~~~~~e~~~~~~~~~~p~~~Y~~s 147 (312)
T d2b69a1 69 IYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGA-RLLLASTSEVYGDPEVHPQSEDYWGHVNPIGPRACYDEG 147 (312)
T ss_dssp EEECCSCCSHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTC-EEEEEEEGGGGBSCSSSSBCTTCCCBCCSSSTTHHHHHH
T ss_pred EEECcccCCchhHHhCHHHHHHHHHHHHHHHHHHHHHcCC-cEEEEEChheecCCCCCCCCccccCCCCCCCCccHHHHH
Confidence 999999433 3467888999999999999999999987 8999999999986554444333211 1245788999999
Q ss_pred HHHHHHHHHHHhCCCCceEEEEecCCcccCCCC----CChHHHHHHHHcCCCeEEecCCCceeecccHHHHHHHHHHHHH
Q 047227 163 KAEGEALVIKANGTNGLLTCCIRPSSIFGPGDR----LLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICAER 238 (485)
Q Consensus 163 K~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~----~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~D~a~a~~~~~~ 238 (485)
|.++|.+++.+++.++++++++||++||||++. .+++.++..+..|+++.++|+|++.++|+|++|++++++.+++
T Consensus 148 K~~~E~~~~~~~~~~~~~~~~lR~~~vyGp~~~~~~~~~i~~~i~~~~~g~~i~i~~~g~~~r~~i~v~D~~~~~~~~~~ 227 (312)
T d2b69a1 148 KRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHMNDGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMN 227 (312)
T ss_dssp HHHHHHHHHHHHHHHCCCEEEEEECCEECTTCCTTCCCHHHHHHHHHHHTCCEEEESSSCCEEECEEHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhCCcEEEEEeeeEECCCCCCCCccHHHHHHHHHHcCCCeEEeCCCCeeEccEEHHHHHHHHHHHHh
Confidence 999999999999889999999999999999764 3678899999999999999999999999999999999998865
Q ss_pred HhccccchhhccCCcEEEeeCCCCccHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCCCCCCCCHHH
Q 047227 239 ALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELTYRLLGPYGMKVPQLTPSR 318 (485)
Q Consensus 239 ~~~~~~~~~~~~~g~~ynv~~~~~~t~~el~~~i~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 318 (485)
. ..++.||+++++.+++.|+++.+.+.+|.+.+....+.. + .
T Consensus 228 ~----------~~~~~~n~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-----------------------~----~- 269 (312)
T d2b69a1 228 S----------NVSSPVNLGNPEEHTILEFAQLIKNLVGSGSEIQFLSEA-----------------------Q----D- 269 (312)
T ss_dssp S----------SCCSCEEESCCCEEEHHHHHHHHHHHHTCCCCEEEECCC-----------------------T----T-
T ss_pred h----------ccCCceEecCCcccchhhHHHHHHHHhCCCCceEECCCC-----------------------C----C-
Confidence 2 346689999999999999999999999987654432210 0 0
Q ss_pred HHhhccceeeehhhHHhhcCCCCCCChHHHHHHHHHHHHHhHh
Q 047227 319 VRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSYSHLRA 361 (485)
Q Consensus 319 ~~~~~~~~~~d~~ka~~~lG~~p~~~l~e~i~~~~~~~~~~~~ 361 (485)
......+|++|+++.|||+|.++++|+|+++++||++..+
T Consensus 270 ---~~~~~~~d~~k~~~~lgw~p~~~l~~~I~~~i~w~~~~~~ 309 (312)
T d2b69a1 270 ---DPQKRKPDIKKAKLMLGWEPVVPLEEGLNKAIHYFRKELE 309 (312)
T ss_dssp ---CCCCCCBCCHHHHHHHCCCCCSCHHHHHHHHHHHHHHHHH
T ss_pred ---CCCeeeECHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHh
Confidence 0112456999999999999999999999999999988655
|
| >d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=5.2e-46 Score=370.00 Aligned_cols=328 Identities=16% Similarity=0.157 Sum_probs=236.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcC--CC
Q 047227 8 RLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQG--AE 85 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~--~d 85 (485)
|++||||||||||++|+++|+++| ++|++++|..+.........-........++++++.+|++|.+++.+++++ +|
T Consensus 2 K~vLITGatGfiGs~lv~~Ll~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 80 (357)
T d1db3a_ 2 KVALITGVTGQDGSYLAEFLLEKG-YEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSDTSNLTRILREVQPD 80 (357)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT-CEEEEECC---------------------CCEEECCCCSSCHHHHHHHHHHHCCS
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCc-CEEEEEECCCcccchhhHHHHHhhhhhcCCCeEEEEeecCCHHHHHHHHhccCCC
Confidence 789999999999999999999999 599999986542211100000011122346899999999999999999985 79
Q ss_pred EEEEcCCC---CCCCCchhhhHHHHHHHHHHHHHHHHhcCC---CEEEEecCccccccCCCCcCCCCCCCCCCCCCCchH
Q 047227 86 VVFHMAAP---NSSINNHKLHHSVNVEGTKNVIDACAELKV---KRLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDFY 159 (485)
Q Consensus 86 ~Vih~aa~---~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v---~r~V~~SS~~vy~~~~~~~~~~~e~~~~~~~~~~~Y 159 (485)
+|+|+|+. ..+..++..++++|+.||.||+++|++.++ +||||+||++|||... ..+.+|+.| ..|.++|
T Consensus 81 ~v~h~aa~~~~~~~~~~~~~~~~~Nv~gt~nllea~~~~~~~~~~r~i~~SS~~vYG~~~--~~~~~E~~~--~~P~~~Y 156 (357)
T d1db3a_ 81 EVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLEKKTRFYQASTSELYGLVQ--EIPQKETTP--FYPRSPY 156 (357)
T ss_dssp EEEECCCCCTTTTTTSCHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGGTTCC--SSSBCTTSC--CCCCSHH
T ss_pred EEEEeecccccchhhhCHHHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEchhhhCCCC--CCCcCCCCC--CCCCChH
Confidence 99999993 345678889999999999999999999864 4799999999997533 334566654 5788999
Q ss_pred HHHHHHHHHHHHHHhCCCCceEEEEecCCcccCCCCC-----ChHHHHHHHHcC-CCeEEecCCCceeecccHHHHHHHH
Q 047227 160 SATKAEGEALVIKANGTNGLLTCCIRPSSIFGPGDRL-----LVPSLVAAARAG-KSKFIIGDGNNVYDFTYVANVAHAH 233 (485)
Q Consensus 160 ~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~~-----~~~~~~~~~~~g-~~~~~~g~g~~~~~~i~v~D~a~a~ 233 (485)
+.+|..+|++++.++++++++++++||+++|||+... .+..++..+..+ .....+|++++.++|+|++|+|+++
T Consensus 157 ~~sK~~~E~~~~~~~~~~~l~~~ilR~~~vyGp~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~~~~~r~~~~v~D~~~a~ 236 (357)
T d1db3a_ 157 AVAKLYAYWITVNYRESYGMYACNGILFNHESPRRGETFVTRKITRAIANIAQGLESCLYLGNMDSLRDWGHAKDYVKMQ 236 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTSCTTSHHHHHHHHHHHHHTTSCCCEEESCTTCEECCEEHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEEeccccCCCCCcCCCchHHHHHHHHHHhCCCceEEECCCCeeecceeechHHHHH
Confidence 9999999999999998889999999999999997532 233344444444 4466779999999999999999999
Q ss_pred HHHHHHhccccchhhccCCcEEEeeCCCCccHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCCCCCC
Q 047227 234 ICAERALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELTYRLLGPYGMKVPQ 313 (485)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~g~~ynv~~~~~~t~~el~~~i~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~ 313 (485)
+.+++. ..++.||+++++++|+.|+++.+.+.+|...+....+.... .......+...+.
T Consensus 237 ~~~~~~----------~~~~~yni~sg~~~s~~~~~~~~~~~~g~~~~~~~~~~~~~----------~~~~~~~~~~~~~ 296 (357)
T d1db3a_ 237 WMMLQQ----------EQPEDFVIATGVQYSVRQFVEMAAAQLGIKLRFEGTGVEEK----------GIVVSVTGHDAPG 296 (357)
T ss_dssp HHTTSS----------SSCCCEEECCCCCEEHHHHHHHHHHTTTEEEEEESCGGGCE----------EEEEEECSSSCTT
T ss_pred HHHHhC----------CCCCeEEECCCCceehHHHHHHHHHHhCCcccccccccccc----------chhhhhhcccccc
Confidence 988552 45689999999999999999999999985433221111000 0000000001111
Q ss_pred CCHHH---------HHhh-ccceeeehhhHHhhcCCCCCCChHHHHHHHHHHHHHhH
Q 047227 314 LTPSR---------VRLL-SCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSYSHLR 360 (485)
Q Consensus 314 ~~~~~---------~~~~-~~~~~~d~~ka~~~lG~~p~~~l~e~i~~~~~~~~~~~ 360 (485)
..+.. .+.. .....+|++|++++|||+|+++++|+|+++++++.+..
T Consensus 297 ~~~~~~~~~~~~~~~r~~~~~~~~~d~skakk~LGw~P~~sl~egI~~~I~~~l~~~ 353 (357)
T d1db3a_ 297 VKPGDVIIAVDPRYFRPAEVETLLGDPTKAHEKLGWKPEITLREMVSEMVANDLEAA 353 (357)
T ss_dssp CCTTCEEEEECGGGCCCCC-CCCCBCCHHHHHHHCCCCCSCHHHHHHHHHHHHHHHH
T ss_pred cccCceeEeeccccCCCccccccccCHHHHHHHHCCCcCCCHHHHHHHHHHHHHHHH
Confidence 11100 0000 11234699999999999999999999999998876643
|
| >d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=3e-45 Score=361.80 Aligned_cols=310 Identities=22% Similarity=0.211 Sum_probs=244.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc--CCC
Q 047227 8 RLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ--GAE 85 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--~~d 85 (485)
|||||||||||||++|++.|+++| ++|++++|.......... ........+++++++|++|.+.+.++++ ++|
T Consensus 1 MKiLItG~tGfIG~~l~~~L~~~g-~~V~~~d~~~~~~~~~~~----~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~~d 75 (338)
T d1udca_ 1 MRVLVTGGSGYIGSHTCVQLLQNG-HDVIILDNLCNSKRSVLP----VIERLGGKHPTFVEGDIRNEALMTEILHDHAID 75 (338)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCSSCCTTHHH----HHHHHHTSCCEEEECCTTCHHHHHHHHHHTTCS
T ss_pred CEEEEECCCCHHHHHHHHHHHHCc-CEEEEEECCCCcchhhHH----HHHhhcCCCCEEEEeecCCHHHHHHHHhccCCC
Confidence 689999999999999999999999 699999875432211101 1222345689999999999999999997 799
Q ss_pred EEEEcCCCCC---CCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCccccccCCCCcCCCCCCCCCCCCCCchHHHH
Q 047227 86 VVFHMAAPNS---SINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDFYSAT 162 (485)
Q Consensus 86 ~Vih~aa~~~---~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy~~~~~~~~~~~e~~~~~~~~~~~Y~~s 162 (485)
+|||+||... +..++..++++|+.||.+++++|++.++++|||+||.++|++...... .|..+ +..|.++|+.+
T Consensus 76 ~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~nlL~~~~~~~v~~~i~~Ss~~vy~~~~~~~~--~e~~~-~~~p~~~Y~~s 152 (338)
T d1udca_ 76 TVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIFSSSATVYGDQPKIPY--VESFP-TGTPQSPYGKS 152 (338)
T ss_dssp EEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEGGGGCSCCSSSB--CTTSC-CCCCSSHHHHH
T ss_pred EEEECCCccchhhHHhCHHHHHHhHHHHHHHHHHHHHHhCCCEEEecCcceEEcccccccc--ccccc-cCCCcchHHHH
Confidence 9999999433 335788999999999999999999999999999999999975544332 22222 35789999999
Q ss_pred HHHHHHHHHHHhC-CCCceEEEEecCCcccCCCC------------CChHHHHHHHHcC-CCeEEecC------CCceee
Q 047227 163 KAEGEALVIKANG-TNGLLTCCIRPSSIFGPGDR------------LLVPSLVAAARAG-KSKFIIGD------GNNVYD 222 (485)
Q Consensus 163 K~~~E~~~~~~~~-~~g~~~~ilRp~~v~Gp~~~------------~~~~~~~~~~~~g-~~~~~~g~------g~~~~~ 222 (485)
|..+|+++..+.. ..+++++++||+++|||++. .+++.++..+..+ +++.++|+ |++.+|
T Consensus 153 K~~~e~~~~~~~~~~~~~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~g~~~~~~~g~~~rd 232 (338)
T d1udca_ 153 KLMVEQILTDLQKAQPDWSIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRD 232 (338)
T ss_dssp HHHHHHHHHHHHHHSTTCEEEEEEECEEECCCTTSSSCCCCCSSCCSHHHHHHHHHTTSSSCEEEECSCSSSTTSSCEEC
T ss_pred HhhhhHHHHHHHhhccCCeEEEEeeccEEeccCCCCCCCCccccHHHHHHHHHHHHhcCCCCEEEeCCCcccCCCCceee
Confidence 9999999986554 46899999999999998643 2456666655443 46666664 788999
Q ss_pred cccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCCCccHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHH
Q 047227 223 FTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELTYR 302 (485)
Q Consensus 223 ~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~~t~~el~~~i~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~ 302 (485)
|+|++|++.++..+...+... ..+++||+++++++|+.|+++.+.+.+|.+.+....|..
T Consensus 233 ~i~v~D~~~~~~~~~~~~~~~------~~~~i~Ni~~~~~~si~e~~~~i~~~~g~~~~~~~~~~~-------------- 292 (338)
T d1udca_ 233 YIHVMDLADGHVVAMEKLANK------PGVHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPRR-------------- 292 (338)
T ss_dssp EEEHHHHHHHHHHHHHHHTTC------CEEEEEEESCSSCEEHHHHHHHHHHHHTSCCCEEEECCC--------------
T ss_pred EEEEeehhhhccccccccccc------cCcceeeecCCCCCcHHHHHHHHHHHHCCCCceEECCCC--------------
Confidence 999999999998887755444 456899999999999999999999999977654432210
Q ss_pred HhCCCCCCCCCCCHHHHHhhccceeeehhhHHhhcCCCCCCChHHHHHHHHHHHHHhHhc
Q 047227 303 LLGPYGMKVPQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSYSHLRAE 362 (485)
Q Consensus 303 ~~~~~~~~~p~~~~~~~~~~~~~~~~d~~ka~~~lG~~p~~~l~e~i~~~~~~~~~~~~~ 362 (485)
+ .. .....+|++|+++.|||+|.++++|+|++|++||+++++.
T Consensus 293 ---------~----~~----~~~~~~d~~k~~~~lgwkp~~~l~egi~~ti~w~~~~~~~ 335 (338)
T d1udca_ 293 ---------E----GD----LPAYWADASKADRELNWRVTRTLDEMAQDTWHWQSRHPQG 335 (338)
T ss_dssp ---------T----TC----CSBCCBCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHCTTC
T ss_pred ---------C----CC----CCEeeECHHHHHHHHCCCcCCCHHHHHHHHHHHHHhchhh
Confidence 0 00 1134579999999999999999999999999999997553
|
| >d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose-3', 5'-epimerase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=100.00 E-value=1.2e-44 Score=361.02 Aligned_cols=303 Identities=21% Similarity=0.223 Sum_probs=247.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCCC
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGAE 85 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~d 85 (485)
++|||||||||||||++|+++|+++| ++|+++++.+...... .....++..+|++|.+++.++++++|
T Consensus 14 ~nMKILVTGgsGfIGs~lv~~L~~~g-~~V~~~d~~~~~~~~~-----------~~~~~~~~~~D~~~~~~~~~~~~~~d 81 (363)
T d2c5aa1 14 ENLKISITGAGGFIASHIARRLKHEG-HYVIASDWKKNEHMTE-----------DMFCDEFHLVDLRVMENCLKVTEGVD 81 (363)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSCCSSSCG-----------GGTCSEEEECCTTSHHHHHHHHTTCS
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCc-CEEEEEeCCCccchhh-----------hcccCcEEEeechhHHHHHHHhhcCC
Confidence 46899999999999999999999999 5999998765422111 12456889999999999999999999
Q ss_pred EEEEcCCCCCC----CCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCccccccCCCCcCCCCC---CCCCCCCCCch
Q 047227 86 VVFHMAAPNSS----INNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVVFDGVHGIINGNE---ALPYPPKHNDF 158 (485)
Q Consensus 86 ~Vih~aa~~~~----~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy~~~~~~~~~~~e---~~~~~~~~~~~ 158 (485)
+|||+|+.... ...+......|+.++.+++++|++.+++||||+||..+|+........++. ....+..|.+.
T Consensus 82 ~Vih~a~~~~~~~~~~~~~~~~~~~n~~gt~~ll~~~~~~~vk~~i~~SS~~~~~~~~~~~~~~~~~~~~e~~~~~p~~~ 161 (363)
T d2c5aa1 82 HVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFFYASSACIYPEFKQLETTNVSLKESDAWPAEPQDA 161 (363)
T ss_dssp EEEECCCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEEGGGSCGGGSSSSSSCEECGGGGSSBCCSSH
T ss_pred eEeecccccccccccccccccccccccchhhHHHHhHHhhCccccccccccccccccccccccccccccccCCcCCCCCH
Confidence 99999984443 567788899999999999999999999999999999999755443322221 11225678999
Q ss_pred HHHHHHHHHHHHHHHhCCCCceEEEEecCCcccCCCCC-------ChHHHHHHHHcCCCeEEecCCCceeecccHHHHHH
Q 047227 159 YSATKAEGEALVIKANGTNGLLTCCIRPSSIFGPGDRL-------LVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAH 231 (485)
Q Consensus 159 Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~~-------~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~D~a~ 231 (485)
|+.+|..+|++++.+.+++|++++++||+++|||++.. .................+|+|.+.++|+|++|+++
T Consensus 162 Yg~sK~~~E~~~~~~~~~~gl~~~ilR~~~vyG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~rd~i~v~D~~~ 241 (363)
T d2c5aa1 162 FGLEKLATEELCKHYNKDFGIECRIGRFHNIYGPFGTWKGGREKAPAAFCRKAQTSTDRFEMWGDGLQTRSFTFIDECVE 241 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCCSSSCCCHHHHHHHHHHHCSSCEEEESCSCCEECCEEHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCEEEEEeeeEeccCCcccccccccccccccccccccccccccCCCCeEEEEeehhHHHH
Confidence 99999999999999998889999999999999997641 23344556677778889999999999999999999
Q ss_pred HHHHHHHHhccccchhhccCCcEEEeeCCCCccHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCCCC
Q 047227 232 AHICAERALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELTYRLLGPYGMKV 311 (485)
Q Consensus 232 a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~~t~~el~~~i~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (485)
++..+++. ..+++||+++++.+++.|+++.+.+.+|.+.+....|.
T Consensus 242 ~~~~~~~~----------~~~~~~ni~~~~~~s~~~l~~~i~~~~g~~~~i~~~~~------------------------ 287 (363)
T d2c5aa1 242 GVLRLTKS----------DFREPVNIGSDEMVSMNEMAEMVLSFEEKKLPIHHIPG------------------------ 287 (363)
T ss_dssp HHHHHHHS----------SCCSCEEECCCCCEEHHHHHHHHHHTTTCCCCEEEECC------------------------
T ss_pred HHHHHHhC----------CCCCeEEEecCCcccHHHHHHHHHHHhCCCCceEeCCC------------------------
Confidence 99988662 45679999999999999999999999998766544321
Q ss_pred CCCCHHHHHhhccceeeehhhHHhhcCCCCCCChHHHHHHHHHHHHHhHhc
Q 047227 312 PQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSYSHLRAE 362 (485)
Q Consensus 312 p~~~~~~~~~~~~~~~~d~~ka~~~lG~~p~~~l~e~i~~~~~~~~~~~~~ 362 (485)
|. ....+..|++|+++.|||+|.++++|+|++|++||+++.+.
T Consensus 288 ~~--------~~~~~~~d~ska~~~LGw~p~~sleegi~~ti~w~~~~~~~ 330 (363)
T d2c5aa1 288 PE--------GVRGRNSDNNLIKEKLGWAPNMRLKEGLRITYFWIKEQIEK 330 (363)
T ss_dssp CC--------CCSBCEECCHHHHHHHSCCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred CC--------CccccccCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 10 01234579999999999999999999999999999887553
|
| >d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-N-acetylglucosamine 4-epimerase WbpP species: Pseudomonas aeruginosa [TaxId: 287]
Probab=100.00 E-value=1.6e-45 Score=364.12 Aligned_cols=317 Identities=23% Similarity=0.260 Sum_probs=251.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCCC
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGAE 85 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~d 85 (485)
++|+|||||||||||++|+++|+++| ++|+++|+.......................++++.+|+.|...+.....+.+
T Consensus 15 ~~k~iLVTG~tGfIGs~lv~~L~~~g-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~d~~~~~~~~~~~~ 93 (341)
T d1sb8a_ 15 QPKVWLITGVAGFIGSNLLETLLKLD-QKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNACAGVD 93 (341)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHHHTTCS
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCc-CEEEEEECCCCcchhhHHHHHHhhhhcccCCeeEEeecccccccccccccccc
Confidence 45799999999999999999999999 59999987433111000000001111224679999999999999999999999
Q ss_pred EEEEcCCCCC---CCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCccccccCCCCcCCCCCCCCCCCCCCchHHHH
Q 047227 86 VVFHMAAPNS---SINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDFYSAT 162 (485)
Q Consensus 86 ~Vih~aa~~~---~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy~~~~~~~~~~~e~~~~~~~~~~~Y~~s 162 (485)
.|+|+++... +..++...+++|+.|+.+++++|++.++++|||+||+++||..... +.+|+.| ..|.+.|+.+
T Consensus 94 ~v~~~~a~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~i~~SS~~vyg~~~~~--~~~E~~~--~~p~~~Y~~s 169 (341)
T d1sb8a_ 94 YVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAKVQSFTYAASSSTYGDHPGL--PKVEDTI--GKPLSPYAVT 169 (341)
T ss_dssp EEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEGGGGTTCCCS--SBCTTCC--CCCCSHHHHH
T ss_pred ccccccccccccccccCccchhheeehhHHHHHHHHHhcCCceEEEcccceeeCCCCCC--CccCCCC--CCCCCcchHH
Confidence 9999998433 4567888999999999999999999999999999999999755443 3455544 6889999999
Q ss_pred HHHHHHHHHHHhCCCCceEEEEecCCcccCCCC------CChHHHHHHHHcCCCeEEecCCCceeecccHHHHHHHHHHH
Q 047227 163 KAEGEALVIKANGTNGLLTCCIRPSSIFGPGDR------LLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICA 236 (485)
Q Consensus 163 K~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~------~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~D~a~a~~~~ 236 (485)
|..+|++++.+++.++++++++||+++|||+.. .+++.++..+..|+++.++|+|.+.++|+||+|+|.++..+
T Consensus 170 K~~~E~~~~~~~~~~~i~~~ilR~~~v~G~~~~~~~~~~~~i~~~~~~~~~g~~i~~~g~g~~~r~~i~v~D~~~a~~~~ 249 (341)
T d1sb8a_ 170 KYVNELYADVFSRCYGFSTIGLRYFNVFGRRQDPNGAYAAVIPKWTSSMIQGDDVYINGDGETSRDFCYIENTVQANLLA 249 (341)
T ss_dssp HHHHHHHHHHHHHHHCCCCEEEEECCEECTTCCCCSTTCCHHHHHHHHHHHTCCCEEESSSCCEECCEEHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEeceeeccCcCCCCchhhhHHHHHHHHHcCCceEEcCCCCEEEEEEEEeccchhhhhh
Confidence 999999999999888999999999999998753 35778889999999999999999999999999999999988
Q ss_pred HHHhccccchhhccCCcEEEeeCCCCccHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCCCCCCCCH
Q 047227 237 ERALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELTYRLLGPYGMKVPQLTP 316 (485)
Q Consensus 237 ~~~~~~~~~~~~~~~g~~ynv~~~~~~t~~el~~~i~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 316 (485)
+... ....++.||+++++.+|+.|+++.+.+.++.+......... .. ...+
T Consensus 250 ~~~~-------~~~~~~~~~~~~~~~~si~~i~~~i~~~~~~~~~~~~~~~~---------------------~~-~~~~ 300 (341)
T d1sb8a_ 250 ATAG-------LDARNQVYNIAVGGRTSLNQLFFALRDGLAENGVSYHREPV---------------------YR-DFRE 300 (341)
T ss_dssp HTCC-------GGGCSEEEEESCSCCEEHHHHHHHHHHHHHHTTCCCCCCCE---------------------EE-CCCT
T ss_pred hhcc-------ccccceeeeecccccchHHHHHHHHHHHhcccccccccccc---------------------cc-CCCC
Confidence 7632 22568899999999999999999999988765332221100 00 0000
Q ss_pred HHHHhhccceeeehhhHHhhcCCCCCCChHHHHHHHHHHHHHhH
Q 047227 317 SRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSYSHLR 360 (485)
Q Consensus 317 ~~~~~~~~~~~~d~~ka~~~lG~~p~~~l~e~i~~~~~~~~~~~ 360 (485)
. .......|++|+++.|||+|+++++|+|+++++||++..
T Consensus 301 ~----~~~~~~~d~~k~~~~LGw~p~~sl~~gi~~ti~wy~~~~ 340 (341)
T d1sb8a_ 301 G----DVRHSLADISKAAKLLGYAPKYDVSAGVALAMPWYIMFL 340 (341)
T ss_dssp T----CCSBCCBCCHHHHHHTCCCCCCCHHHHHHHHHHHHHHHT
T ss_pred C----CcCeeeeCHHHHHHHHCCCcCCCHHHHHHHHHHHHHHhc
Confidence 0 011235699999999999999999999999999998753
|
| >d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Polymyxin resistance protein ArnA (PrmI) species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=5.1e-45 Score=360.60 Aligned_cols=321 Identities=18% Similarity=0.237 Sum_probs=247.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHH-HhcCCCE
Q 047227 8 RLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQ-ALQGAEV 86 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~-~~~~~d~ 86 (485)
|||||||||||||++++++|+++||++|+++++.... .......++++++.+|+++.+++.+ +++++|+
T Consensus 1 MKILITG~tGfiG~~l~~~Ll~~g~~~V~~ld~~~~~----------~~~~~~~~~~~~i~~Di~~~~~~~~~~~~~~d~ 70 (342)
T d2blla1 1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDA----------ISRFLNHPHFHFVEGDISIHSEWIEYHVKKCDV 70 (342)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGG----------GGGGTTCTTEEEEECCTTTCSHHHHHHHHHCSE
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCcc----------hhhhccCCCeEEEECccCChHHHHHHHHhCCCc
Confidence 6899999999999999999999998899999876432 1222335789999999998766555 6678999
Q ss_pred EEEcCCCCC---CCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCccccccCCCCcCCCCC---CCCCCCCCCchHH
Q 047227 87 VFHMAAPNS---SINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVVFDGVHGIINGNE---ALPYPPKHNDFYS 160 (485)
Q Consensus 87 Vih~aa~~~---~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy~~~~~~~~~~~e---~~~~~~~~~~~Y~ 160 (485)
|||+|+... ...++...+.+|+.|+.+++++|.+.++ +++|.||+.+|+........+.. .......|.+.|+
T Consensus 71 Vih~a~~~~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~~~-~~~~~ss~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~Y~ 149 (342)
T d2blla1 71 VLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRK-RIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYS 149 (342)
T ss_dssp EEECBCCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTC-EEEEECCGGGGBTCCCSSBCTTTCCCBCCCTTCGGGHHH
T ss_pred cccccccccccccccCCccccccccccccccccccccccc-cccccccccccccccccccccccccccccccCCCcchhh
Confidence 999999433 3346678899999999999999999987 66889999999755443332211 1112346778999
Q ss_pred HHHHHHHHHHHHHhCCCCceEEEEecCCcccCCCCC----------ChHHHHHHHHcCCCeEEecCCCceeecccHHHHH
Q 047227 161 ATKAEGEALVIKANGTNGLLTCCIRPSSIFGPGDRL----------LVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVA 230 (485)
Q Consensus 161 ~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~~----------~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~D~a 230 (485)
.+|..+|++++.+.++++++++++||+.+|||+... .++.++..+..|+++.++|+|++.++|+|++|+|
T Consensus 150 ~sK~~~E~~~~~~~~~~~~~~~i~r~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~r~~i~v~D~~ 229 (342)
T d2blla1 150 VSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGI 229 (342)
T ss_dssp HHHHHHHHHHHHHHHHHCCCEEEEEECSEECSSCCCTTCSBSCBCHHHHHHHHHHHHTCCEEEGGGSCCEEECEEHHHHH
T ss_pred hcccchhhhhhhhhcccCceeEEeeccccccccccccccccccccccchHHHHHHHhCCCccccCCCCeeeeeccccccc
Confidence 999999999999998899999999999999986431 3677888999999999999999999999999999
Q ss_pred HHHHHHHHHhccccchhhccCCcEEEeeCCC-CccHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCC
Q 047227 231 HAHICAERALASEVTVAEKAAGQAYFVTNME-SIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELTYRLLGPYGM 309 (485)
Q Consensus 231 ~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~-~~t~~el~~~i~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 309 (485)
+++..+++.... ...|++||+++++ ++|+.|+++.+.+.+|........|....... .
T Consensus 230 ~a~~~~~~~~~~------~~~g~~~Nig~~~~~~t~~~l~~~i~~~~~~~~~~~~~~~~~~~~~---------------~ 288 (342)
T d2blla1 230 EALYRIIENAGN------RCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRV---------------V 288 (342)
T ss_dssp HHHHHHHHCGGG------TTTTEEEEECCTTSEEEHHHHHHHHHHHHHTCTTGGGSCCCCCEEE---------------C
T ss_pred ceeeeehhhccc------cCCCeEEEEecccchhHHHHHHHHHHHHhCCCccccccCcccccce---------------e
Confidence 999999875322 2568999998875 58999999999999998776655443210000 0
Q ss_pred CCCCCCHHHHHhhccceeeehhhHHhhcCCCCCCChHHHHHHHHHHHHHhHh
Q 047227 310 KVPQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSYSHLRA 361 (485)
Q Consensus 310 ~~p~~~~~~~~~~~~~~~~d~~ka~~~lG~~p~~~l~e~i~~~~~~~~~~~~ 361 (485)
....+.+.... ....+..|++|+++.|||+|+++++|+|+++++||++..+
T Consensus 289 ~~~~~~~~~~~-~~~~~~~d~~k~~~~lgw~P~~sleegl~~ti~~y~~~~~ 339 (342)
T d2blla1 289 ESSSYYGKGYQ-DVEHRKPSIRNAHRCLDWEPKIDMQETIDETLDFFLRTVD 339 (342)
T ss_dssp -------------CCCCCBCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHSC
T ss_pred ccccccccccc-cccccccCHHHHHHHHCCCcCCCHHHHHHHHHHHHHhCcC
Confidence 00000000000 1123456999999999999999999999999999987543
|
| >d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=100.00 E-value=8.5e-44 Score=352.47 Aligned_cols=311 Identities=21% Similarity=0.243 Sum_probs=243.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCCC
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGAE 85 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~d 85 (485)
.||+|||||||||||++|+++|+++|+ .|.++.+.......... ........+++++.+|++|.+.+.+++++.+
T Consensus 1 ~~mkILVTGgtGfIGs~lv~~L~~~g~-~v~v~~~d~~~~~~~~~----~~~~~~~~~i~~~~~Di~d~~~~~~~~~~~~ 75 (346)
T d1oc2a_ 1 QFKNIIVTGGAGFIGSNFVHYVYNNHP-DVHVTVLDKLTYAGNKA----NLEAILGDRVELVVGDIADAELVDKLAAKAD 75 (346)
T ss_dssp CCSEEEEETTTSHHHHHHHHHHHHHCT-TCEEEEEECCCTTCCGG----GTGGGCSSSEEEEECCTTCHHHHHHHHTTCS
T ss_pred CcCEEEEeCCCcHHHHHHHHHHHHCCC-CeEEEEEeCCCccccHH----HHHHhhcCCeEEEEccCCCHHHHHHHHhhhh
Confidence 369999999999999999999999995 54444332111000000 1122345789999999999999999999999
Q ss_pred EEEEcCCCCC---CCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCccccccCCCC--------cCCCCCCCCCCCC
Q 047227 86 VVFHMAAPNS---SINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVVFDGVHG--------IINGNEALPYPPK 154 (485)
Q Consensus 86 ~Vih~aa~~~---~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy~~~~~~--------~~~~~e~~~~~~~ 154 (485)
.|+|+|+... +..++..++++|+.|+.|++++|++.+. ++|++||.++|+..... ..........+..
T Consensus 76 ~v~~~a~~~~~~~~~~~~~~~~~~N~~g~~nll~~~~~~~~-k~i~~ss~~vyg~~~~~~~~~~~~~~~~~~~~e~~~~~ 154 (346)
T d1oc2a_ 76 AIVHYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDI-RFHHVSTDEVYGDLPLREDLPGHGEGPGEKFTAETNYN 154 (346)
T ss_dssp EEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHHTC-EEEEEEEGGGGCCBCCGGGSTTTTCSTTSSBCTTSCCC
T ss_pred hhhhhhhcccccchhhCcccceeeehHhHHhhhhhhccccc-cccccccceEecccCccccccccccCcccccccCCCCC
Confidence 9999999443 3457888999999999999999999985 89999999999742111 0011111122467
Q ss_pred CCchHHHHHHHHHHHHHHHhCCCCceEEEEecCCcccCCCC--CChHHHHHHHHcCCCeEEecCCCceeecccHHHHHHH
Q 047227 155 HNDFYSATKAEGEALVIKANGTNGLLTCCIRPSSIFGPGDR--LLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHA 232 (485)
Q Consensus 155 ~~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~--~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~D~a~a 232 (485)
|.+.|+.+|..+|.+++.++++++++++++||+++|||+.. ..+..++..+..|.++.++|+|++.++|+|++|+|++
T Consensus 155 p~s~Y~~sK~~~E~~~~~~~~~~~i~~~ilR~~~vyGp~~~~~~~~~~~i~~~~~~~~~~i~~~g~~~r~~i~v~D~a~a 234 (346)
T d1oc2a_ 155 PSSPYSSTKAASDLIVKAWVRSFGVKATISNCSNNYGPYQHIEKFIPRQITNILAGIKPKLYGEGKNVRDWIHTNDHSTG 234 (346)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEESTTCCTTSHHHHHHHHHHHTCCCEEETTSCCEEECEEHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcCCCEEEEeecceeCCCCCccchhHHHHHHHHcCCceeEeCCCCccccccchhhHHHH
Confidence 88999999999999999999888999999999999999763 5677778888899999999999999999999999999
Q ss_pred HHHHHHHhccccchhhccCCcEEEeeCCCCccHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCCCCC
Q 047227 233 HICAERALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELTYRLLGPYGMKVP 312 (485)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~~t~~el~~~i~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p 312 (485)
++.+++. ...++.||+++++..++.|+++.+.+.++.+...+.... ..|
T Consensus 235 ~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~----------------------~~~ 283 (346)
T d1oc2a_ 235 VWAILTK---------GRMGETYLIGADGEKNNKEVLELILEKMGQPKDAYDHVT----------------------DRA 283 (346)
T ss_dssp HHHHHHH---------CCTTCEEEECCSCEEEHHHHHHHHHHHTTCCTTCSEEEC----------------------CCT
T ss_pred HHHHHhh---------cccCccccccccccccchHHHHHHHHHhCCCCcceEECC----------------------CCC
Confidence 9888663 255789999999999999999999999997654432110 001
Q ss_pred CCCHHHHHhhccceeeehhhHHhhcCCCCCC-ChHHHHHHHHHHHHHhHh
Q 047227 313 QLTPSRVRLLSCSRTFDCSKAKDLLGYMPIV-PLEEGIKRTVDSYSHLRA 361 (485)
Q Consensus 313 ~~~~~~~~~~~~~~~~d~~ka~~~lG~~p~~-~l~e~i~~~~~~~~~~~~ 361 (485)
. ....+..|++|+++.|||+|++ +++|+|+++++||+++.+
T Consensus 284 ~--------~~~~~~~d~~k~~~~LGw~P~~t~l~e~i~~ti~w~~~n~~ 325 (346)
T d1oc2a_ 284 G--------HDLRYAIDASKLRDELGWTPQFTDFSEGLEETIQWYTDNQD 325 (346)
T ss_dssp T--------CCCBCCBCCHHHHHHHCCCCSCCCHHHHHHHHHHHHHHTHH
T ss_pred C--------CCceeeeCHHHHHHHHCCCCcCCCHHHHHHHHHHHHHHHHH
Confidence 0 0112346999999999999987 699999999999998654
|
| >d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.1e-42 Score=342.32 Aligned_cols=313 Identities=18% Similarity=0.179 Sum_probs=241.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhh--hhhhcCCCeEEEEecCCCHHHHHHHhcC--
Q 047227 8 RLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGIL--GEALRSGRAHYVSFDLRHKAQVLQALQG-- 83 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~Dl~d~~~l~~~~~~-- 83 (485)
+||||||||||||++|+++|+++| ++|+++|+............... .......+++++.+|++|.+.+.+++.+
T Consensus 3 kKILITG~tGfIGs~lv~~Ll~~g-~~V~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~ 81 (346)
T d1ek6a_ 3 EKVLVTGGAGYIGSHTVLELLEAG-YLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFEEMDILDQGALQRLFKKYS 81 (346)
T ss_dssp SEEEEETTTSHHHHHHHHHHHHTT-CCEEEEECSSSSCBCSSSSBHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHHHCC
T ss_pred CeEEEECCCcHHHHHHHHHHHHCc-CEEEEEECCCccccccccchHHHHHHHHhcCCCcEEEEeeccccccccccccccc
Confidence 699999999999999999999999 59999986433222111111011 1223467899999999999999998865
Q ss_pred CCEEEEcCCCCC---CCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCccccccCCCCcCCCCCCCCCCCCCCchHH
Q 047227 84 AEVVFHMAAPNS---SINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDFYS 160 (485)
Q Consensus 84 ~d~Vih~aa~~~---~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy~~~~~~~~~~~e~~~~~~~~~~~Y~ 160 (485)
+++|+|+||... +..+|..++++|+.|+.+++++|++.++++|+|+||..+|+.........++. ...+.++|+
T Consensus 82 ~~~i~h~Aa~~~~~~~~~~p~~~~~~Nv~gt~~l~~~~~~~~v~~~i~~ss~~~~~~~~~~~~~~~~~---~~~~~~~Y~ 158 (346)
T d1ek6a_ 82 FMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHGVKNLVFSSSATVYGNPQYLPLDEAHP---TGGCTNPYG 158 (346)
T ss_dssp EEEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGGCSCSSSSBCTTSC---CCCCSSHHH
T ss_pred cccccccccccCcHhhHhCHHHHHHhhhcccccccchhhhcCcccccccccceeeecccccccccccc---ccccCChHH
Confidence 678999999433 33478889999999999999999999999999999999997655443333222 246778999
Q ss_pred HHHHHHHHHHHHHhC-CCCceEEEEecCCcccCCCC------------CChHHHHHHH-HcCCCeEEec------CCCce
Q 047227 161 ATKAEGEALVIKANG-TNGLLTCCIRPSSIFGPGDR------------LLVPSLVAAA-RAGKSKFIIG------DGNNV 220 (485)
Q Consensus 161 ~sK~~~E~~~~~~~~-~~g~~~~ilRp~~v~Gp~~~------------~~~~~~~~~~-~~g~~~~~~g------~g~~~ 220 (485)
.+|..+|+.+.++++ ..+++.+++||+++|||... .+++.+...+ .++.++.++| +|.+.
T Consensus 159 ~~k~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~g~~~~~~~g~~~ 238 (346)
T d1ek6a_ 159 KSKFFIEEMIRDLCQADKTWNAVLLRYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDYDTEDGTGV 238 (346)
T ss_dssp HHHHHHHHHHHHHHHHCTTCEEEEEEECEEECCCTTSSCCCCCSSSCCSHHHHHHHHHHTSSSCEEEECSCSSSSSSSCE
T ss_pred HHHHHHHHHHHHHHHhccCCceEEEeecceeccCCCCCcCccccccHHHHHHHHHHHHHcCCCcEEEcCCcccCCCCCee
Confidence 999999999998765 46899999999999998642 2345554433 3455566654 46778
Q ss_pred eecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCCCccHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHH
Q 047227 221 YDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELT 300 (485)
Q Consensus 221 ~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~~t~~el~~~i~~~~g~~~~~~~~p~~~~~~~~~~~~~~ 300 (485)
+||+|++|+|.++..++...... ..+++||+++++.+++.|+++.+.+.+|.+.+....|..
T Consensus 239 Rdfi~v~D~a~~~~~~~~~~~~~------~~~~i~Ni~~~~~~s~~dl~~~i~~~~~~~~~~~~~~~~------------ 300 (346)
T d1ek6a_ 239 RDYIHVVDLAKGHIAALRKLKEQ------CGCRIYNLGTGTGYSVLQMVQAMEKASGKKIPYKVVARR------------ 300 (346)
T ss_dssp ECEEEHHHHHHHHHHHHHHHTTT------CCEEEEEECCSCCEEHHHHHHHHHHHHCSCCCEEEECCC------------
T ss_pred EeEEEEEeccchhhhhccccccc------cCceEEEeCCCCcccHHHHHHHHHHHhCCCCCeEECCCC------------
Confidence 99999999999999887754443 567899999999999999999999999987665433221
Q ss_pred HHHhCCCCCCCCCCCHHHHHhhccceeeehhhHHhhcCCCCCCChHHHHHHHHHHHHHhHh
Q 047227 301 YRLLGPYGMKVPQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSYSHLRA 361 (485)
Q Consensus 301 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~d~~ka~~~lG~~p~~~l~e~i~~~~~~~~~~~~ 361 (485)
| . .......|++|+++.|||+|.++++|+|+++++||+++++
T Consensus 301 -----------~----~----e~~~~~~d~~k~~~~lgw~p~~slee~I~~~i~w~~~n~~ 342 (346)
T d1ek6a_ 301 -----------E----G----DVAACYANPSLAQEELGWTAALGLDRMCEDLWRWQKQNPS 342 (346)
T ss_dssp -----------T----T----CCSEECBCCHHHHHTTCCCCCCCHHHHHHHHHHHHHHCTT
T ss_pred -----------C----C----CCCEeeECHHHHHHHHCCCcCCCHHHHHHHHHHHHHhCHh
Confidence 0 0 0112346999999999999999999999999999998654
|
| >d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=100.00 E-value=1.5e-42 Score=339.60 Aligned_cols=304 Identities=18% Similarity=0.168 Sum_probs=236.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcC--CC
Q 047227 8 RLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQG--AE 85 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~--~d 85 (485)
|+|||||||||||++|+++|+++| ++|++++|..+... .. .+......++++++.+|++|.+.+.+.+.+ .+
T Consensus 1 k~vLItG~tGfiG~~l~~~Ll~~g-~~V~~~~r~~~~~~--~~---~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~ 74 (321)
T d1rpna_ 1 RSALVTGITGQDGAYLAKLLLEKG-YRVHGLVARRSSDT--RW---RLRELGIEGDIQYEDGDMADACSVQRAVIKAQPQ 74 (321)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCCSSCC--CH---HHHHTTCGGGEEEEECCTTCHHHHHHHHHHHCCS
T ss_pred CEEEEECCCCHHHHHHHHHHHHCc-CEEEEEECCCCccc--HH---HHHHhcccCCcEEEEccccChHHhhhhhcccccc
Confidence 689999999999999999999999 69999998754221 11 133333456899999999999999988864 78
Q ss_pred EEEEcCCCCC---CCCchhhhHHHHHHHHHHHHHHHHhcCC-CEEEEecCccccccCCCCcCCCCCCCCCCCCCCchHHH
Q 047227 86 VVFHMAAPNS---SINNHKLHHSVNVEGTKNVIDACAELKV-KRLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDFYSA 161 (485)
Q Consensus 86 ~Vih~aa~~~---~~~~~~~~~~~nv~~t~~ll~a~~~~~v-~r~V~~SS~~vy~~~~~~~~~~~e~~~~~~~~~~~Y~~ 161 (485)
+++|+++... ...++..+++.|+.|+.+++++|++.++ ++|+++||+.+|+.... .+.+|+.| ..|.+.|+.
T Consensus 75 ~~~~~a~~~~~~~~~~~~~~~~~~n~~g~~~~l~~~~~~~~~~~~i~~Ss~~~~~~~~~--~~~~E~~~--~~p~~~Y~~ 150 (321)
T d1rpna_ 75 EVYNLAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPETRFYQASTSEMFGLIQA--ERQDENTP--FYPRSPYGV 150 (321)
T ss_dssp EEEECCSCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTSEEEEEEEGGGGCSCSS--SSBCTTSC--CCCCSHHHH
T ss_pred ccccccccccccccccchHHHHhhhhhchHHHHHHHHHhCCCcccccccchhhcCcccC--CCCCCCCC--ccccChhHH
Confidence 8999988432 3456788899999999999999999994 57888888877754333 33455544 578999999
Q ss_pred HHHHHHHHHHHHhCCCCceEEEEecCCcccCCCC-C----ChHHHHHHHHc-CCCeEEecCCCceeecccHHHHHHHHHH
Q 047227 162 TKAEGEALVIKANGTNGLLTCCIRPSSIFGPGDR-L----LVPSLVAAARA-GKSKFIIGDGNNVYDFTYVANVAHAHIC 235 (485)
Q Consensus 162 sK~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~-~----~~~~~~~~~~~-g~~~~~~g~g~~~~~~i~v~D~a~a~~~ 235 (485)
+|.++|++++.++++++++++++||+++|||... . .+..++.++.. +++...+|+|++.++|+|++|+|+++..
T Consensus 151 sK~~~E~~~~~~~~~~~~~~~~lr~~~vyGp~~~~~~~~~~i~~~~~~~~~~~~~~i~~g~g~~~r~~i~v~D~~~~~~~ 230 (321)
T d1rpna_ 151 AKLYGHWITVNYRESFGLHASSGILFNHESPLRGIEFVTRKVTDAVARIKLGKQQELRLGNVDAKRDWGFAGDYVEAMWL 230 (321)
T ss_dssp HHHHHHHHHHHHHHHHCCCEEEEEECCEECTTSCTTSHHHHHHHHHHHHHTTSCSCEEESCTTCEEECEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCCcEEEEEEecccCCCccccccHHHHHHHHHHHHhCCCCcEEECCCCeEEccEEeHHHHHHHHH
Confidence 9999999999999889999999999999999643 2 12333344444 4556678999999999999999999999
Q ss_pred HHHHhccccchhhccCCcEEEeeCCCCccHHHHHHHHHHHcCCCCCCc-cCCHHHHHHHHHHHHHHHHHhCCCCCCCCCC
Q 047227 236 AERALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRI-KIPAFVMMPIAHMVELTYRLLGPYGMKVPQL 314 (485)
Q Consensus 236 ~~~~~~~~~~~~~~~~g~~ynv~~~~~~t~~el~~~i~~~~g~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 314 (485)
+++. ..++.||+++++..++.++++.+.+..|.+.+.. .++.. ..
T Consensus 231 ~~~~----------~~~~~~ni~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~ 276 (321)
T d1rpna_ 231 MLQQ----------DKADDYVVATGVTTTVRDMCQIAFEHVGLDYRDFLKIDPA------------------------FF 276 (321)
T ss_dssp HHHS----------SSCCCEEECCSCEEEHHHHHHHHHHTTTCCGGGTEEECGG------------------------GC
T ss_pred HHhc----------CCcCCceecccccceehhhhHHHHHHhCCCccceeecCCC------------------------CC
Confidence 9773 3356799999999999999999999998765432 11110 00
Q ss_pred CHHHHHhhccceeeehhhHHhhcCCCCCCChHHHHHHHHHHHHHh
Q 047227 315 TPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSYSHL 359 (485)
Q Consensus 315 ~~~~~~~~~~~~~~d~~ka~~~lG~~p~~~l~e~i~~~~~~~~~~ 359 (485)
.|. .......|++|+++.|||+|+++++|+|++|++|+.+.
T Consensus 277 rp~----~~~~~~~d~~k~~k~lG~~P~~~l~e~i~~tv~~~l~~ 317 (321)
T d1rpna_ 277 RPA----EVDVLLGNPAKAQRVLGWKPRTSLDELIRMMVEADLRR 317 (321)
T ss_dssp CSS----CCCBCCBCTHHHHHHHCCCCCSCHHHHHHHHHHHHHHH
T ss_pred CCC----ccCCccCCHHHHHHHHCCCcCCCHHHHHHHHHHHHHHH
Confidence 000 01124569999999999999999999999999998774
|
| >d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2.4e-42 Score=342.12 Aligned_cols=315 Identities=18% Similarity=0.196 Sum_probs=238.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc--CCC
Q 047227 8 RLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ--GAE 85 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--~~d 85 (485)
|.|||||||||||++|++.|+++| ++|+++++........ ..........+++++.+|++|.+.+.++++ ++|
T Consensus 2 K~ILVTGatGfIG~~lv~~Ll~~g-~~V~~~d~~~~~~~~~----~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d 76 (347)
T d1z45a2 2 KIVLVTGGAGYIGSHTVVELIENG-YDCVVADNLSNSTYDS----VARLEVLTKHHIPFYEVDLCDRKGLEKVFKEYKID 76 (347)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCSSCCTHH----HHHHHHHHTSCCCEEECCTTCHHHHHHHHHHSCCC
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCc-CeEEEEECCCCcchhH----HHhHHhhcccCCeEEEeecCCHHHHHHHHhccCCC
Confidence 569999999999999999999999 5999998654321110 011223345789999999999999999886 799
Q ss_pred EEEEcCCCCC---CCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCccccccCCCCc--CCCCCCCCCCCCCCchHH
Q 047227 86 VVFHMAAPNS---SINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVVFDGVHGI--INGNEALPYPPKHNDFYS 160 (485)
Q Consensus 86 ~Vih~aa~~~---~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy~~~~~~~--~~~~e~~~~~~~~~~~Y~ 160 (485)
+|||+||... ...++..+..+|+.++.+++++|++.+++||||+||.+|||+..... .+.+|+. +..|.+.|+
T Consensus 77 ~VihlAa~~~~~~~~~~~~~~~~~N~~~t~~ll~~~~~~~i~~~i~~SS~~vyg~~~~~~~~~~~~e~~--~~~p~~~Y~ 154 (347)
T d1z45a2 77 SVIHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVSKFVFSSSATVYGDATRFPNMIPIPEEC--PLGPTNPYG 154 (347)
T ss_dssp EEEECCSCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEGGGGCCGGGSTTCCSBCTTS--CCCCCSHHH
T ss_pred EEEEccccccccccccCcccccccchhhhHHHHHHHHhcccceEEeecceeeecCcccCCCCCcccccc--CCCCCChhH
Confidence 9999999432 44467888999999999999999999999999999999998654332 2233433 467889999
Q ss_pred HHHHHHHHHHHHHhC--CCCceEEEEecCCcccCCCC------------CChHHHHHHHH-cCCCeEEecCC------Cc
Q 047227 161 ATKAEGEALVIKANG--TNGLLTCCIRPSSIFGPGDR------------LLVPSLVAAAR-AGKSKFIIGDG------NN 219 (485)
Q Consensus 161 ~sK~~~E~~~~~~~~--~~g~~~~ilRp~~v~Gp~~~------------~~~~~~~~~~~-~g~~~~~~g~g------~~ 219 (485)
.+|..+|++++.+.+ ..+++++++||+++||+... .+++.+...+. .++++.++|++ ..
T Consensus 155 ~sK~~~E~~~~~~~~~~~~~~~~~~lR~~~v~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~i~g~~~~~~~~~~ 234 (347)
T d1z45a2 155 HTKYAIENILNDLYNSDKKSWKFAILRYFNPIGAHPSGLIGEDPLGIPNNLLPYMAQVAVGRREKLYIFGDDYDSRDGTP 234 (347)
T ss_dssp HHHHHHHHHHHHHHHHSTTSCEEEEEEECEEECCCTTSSCCCCCSSSCCSHHHHHHHHHTTSSSCCCCC------CCSSC
T ss_pred hHHHHHHHHHHHHHHhhccCCcEEEEeecceEeecCCCccCCCccccHHHHHHHHHHHHhcCCCCeEEeCCCccccCCce
Confidence 999999999998853 56899999999999997542 23555555444 34556666654 45
Q ss_pred eeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCCCccHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHH
Q 047227 220 VYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVEL 299 (485)
Q Consensus 220 ~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~~t~~el~~~i~~~~g~~~~~~~~p~~~~~~~~~~~~~ 299 (485)
.+|++++.|.+.+++.+++.+...+ .....+++||+++++++++.|+++.+.+.+|.+.+....+..
T Consensus 235 ~~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Ni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~----------- 301 (347)
T d1z45a2 235 IRDYIHVVDLAKGHIAALQYLEAYN--ENEGLCREWNLGSGKGSTVFEVYHAFCKASGIDLPYKVTGRR----------- 301 (347)
T ss_dssp EECEEEHHHHHHHHHHHHHHHHHSC--TTCCEEEEEEESCSCCEEHHHHHHHHHHHHTCCCCC-----------------
T ss_pred eeeeeeeeccccccccccccccccc--ccccccccceecCCCcccHHHHHHHHHHHHCCCCceEeCCCC-----------
Confidence 6788888889999998887654321 222456899999999999999999999999987654322110
Q ss_pred HHHHhCCCCCCCCCCCHHHHHhhccceeeehhhHHhhcCCCCCCChHHHHHHHHHHHHHhHhc
Q 047227 300 TYRLLGPYGMKVPQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSYSHLRAE 362 (485)
Q Consensus 300 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~d~~ka~~~lG~~p~~~l~e~i~~~~~~~~~~~~~ 362 (485)
+ . .......|++|++++|||+|.++++|+|+++++||++++..
T Consensus 302 ------------~----~----~~~~~~~d~sk~~~~lGw~p~~~lee~i~~ti~w~~~np~~ 344 (347)
T d1z45a2 302 ------------A----G----DVLNLTAKPDRAKRELKWQTELQVEDSCKDLWKWTTENPFG 344 (347)
T ss_dssp -----------------------CCCCCBCCHHHHHHTCCCCCCCHHHHHHHHHHHHHHCTTC
T ss_pred ------------C----C----CCCEeeECHHHHHHHHCCCCCCCHHHHHHHHHHHHHhChhc
Confidence 0 0 01133569999999999999999999999999999997543
|
| >d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=9.1e-42 Score=337.65 Aligned_cols=327 Identities=17% Similarity=0.105 Sum_probs=238.9
Q ss_pred CEE-EEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCc-cchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc--C
Q 047227 8 RLC-VVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPH-EEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ--G 83 (485)
Q Consensus 8 ~~i-LVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--~ 83 (485)
||| ||||||||||++++++|+++| ++|++++|..+...... +............+++++.+|++|++.+.++++ +
T Consensus 1 kKI~LVTG~tGfIG~~l~~~Ll~~g-~~V~~i~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~ 79 (347)
T d1t2aa_ 1 RNVALITGITGQDGSYLAEFLLEKG-YEVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGDLTDSTCLVKIINEVK 79 (347)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCCSSCCCTTTGGGC---------CEEEEECCTTCHHHHHHHHHHHC
T ss_pred CCEEEEecCCcHHHHHHHHHHHHCc-CEEEEEECCCcccchhhHHHHhhchhhhccCCcEEEEeecCCchhhHHHHhhcc
Confidence 467 999999999999999999999 59999999654221111 100000111123578999999999999999986 4
Q ss_pred CCEEEEcCCCCC---CCCchhhhHHHHHHHHHHHHHHHHhcCC---CEEEEecCccccccCCCCcCCCCCCCCCCCCCCc
Q 047227 84 AEVVFHMAAPNS---SINNHKLHHSVNVEGTKNVIDACAELKV---KRLIYTSSPSVVFDGVHGIINGNEALPYPPKHND 157 (485)
Q Consensus 84 ~d~Vih~aa~~~---~~~~~~~~~~~nv~~t~~ll~a~~~~~v---~r~V~~SS~~vy~~~~~~~~~~~e~~~~~~~~~~ 157 (485)
+++|+|+++... +..++..++++|+.||.+++++|+++++ ++|||+||++|||+... .+.+|+.| ..|.+
T Consensus 80 ~~~v~~~~a~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~~~i~~SS~~vyg~~~~--~~~~E~~~--~~P~~ 155 (347)
T d1t2aa_ 80 PTEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCGLINSVKFYQASTSELYGKVQE--IPQKETTP--FYPRS 155 (347)
T ss_dssp CSEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGTCSCSS--SSBCTTSC--CCCCS
T ss_pred cceeeeeeeccccchhhccchhhhhhHHHHHHHHHHHHHHcCCCCCcEEEEecchheecCCCC--CCCCCCCC--CCCCC
Confidence 889999998433 3456777889999999999999999874 48999999999975433 34456554 57899
Q ss_pred hHHHHHHHHHHHHHHHhCCCCceEEEEecCCcccCCCCC------ChHHHHHHHHcCCCeEEecCCCceeecccHHHHHH
Q 047227 158 FYSATKAEGEALVIKANGTNGLLTCCIRPSSIFGPGDRL------LVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAH 231 (485)
Q Consensus 158 ~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~~------~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~D~a~ 231 (485)
+|+.||.++|++++.+.++++++++++||+++|||+... ....+...+..+.+...+|++++.++|+|++|+++
T Consensus 156 ~Yg~sK~~aE~~~~~~~~~~~~~~~ilr~~~vyGp~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~g~~~r~~i~v~D~~~ 235 (347)
T d1t2aa_ 156 PYGAAKLYAYWIVVNFREAYNLFAVNGILFNHESPRRGANFVTRKISRSVAKIYLGQLECFSLGNLDAKRDWGHAKDYVE 235 (347)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCTTSHHHHHHHHHHHHHHTSCSCEEESCTTCEECCEEHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCEEEEEecceeCCCCCCCccccccceeeehhhcCCcceeecCCCcceeeeeEecHHHH
Confidence 999999999999999988899999999999999997542 22334556667788889999999999999999999
Q ss_pred HHHHHHHHhccccchhhccCCcEEEeeCCCCccHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCCCC
Q 047227 232 AHICAERALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELTYRLLGPYGMKV 311 (485)
Q Consensus 232 a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~~t~~el~~~i~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (485)
++..+++. ...+.|+++.....++.+..+.+...++........+...+ ..........
T Consensus 236 a~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~ 294 (347)
T d1t2aa_ 236 AMWLMLQN----------DEPEDFVIATGEVHSVREFVEKSFLHIGKTIVWEGKNENEV-----------GRCKETGKVH 294 (347)
T ss_dssp HHHHHHHS----------SSCCCEEECCSCCEEHHHHHHHHHHHTTCCEEEESCGGGCE-----------EEETTTCCEE
T ss_pred HHHHHhhc----------CCCccceeccccccccchhhhhhhhhhcceeeecccchhhh-----------hhhhhcCCce
Confidence 99998773 23457999999999999999999999987654322211100 0000000000
Q ss_pred CCCCHHHHHh-hccceeeehhhHHhhcCCCCCCChHHHHHHHHHHHHHhH
Q 047227 312 PQLTPSRVRL-LSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSYSHLR 360 (485)
Q Consensus 312 p~~~~~~~~~-~~~~~~~d~~ka~~~lG~~p~~~l~e~i~~~~~~~~~~~ 360 (485)
....+...+. ....+.+|++|++++|||+|+++++|+|++|+++..+..
T Consensus 295 ~~~~~~~~rp~~~~~~~~d~skak~~Lgw~P~~sl~e~i~~~I~~~~~~~ 344 (347)
T d1t2aa_ 295 VTVDLKYYRPTEVDFLQGDCTKAKQKLNWKPRVAFDELVREMVHADVELM 344 (347)
T ss_dssp EEECGGGSCSSCCCBCCBCCHHHHHHHCCCCCSCHHHHHHHHHHHHHHHH
T ss_pred eeecccCCCCCCcCEeeECHHHHHHHHCCCcCCCHHHHHHHHHHHHHHHH
Confidence 0000000000 112345699999999999999999999999998865543
|
| >d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sulfolipid biosynthesis protein SQD1 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=100.00 E-value=3.6e-41 Score=339.26 Aligned_cols=317 Identities=16% Similarity=0.185 Sum_probs=232.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCcc---------cc-CCccchhhh--hhhhcCCCeEEEEecCCCH
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSI---------AL-EPHEEQGIL--GEALRSGRAHYVSFDLRHK 74 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~---------~~-~~~~~~~~~--~~~~~~~~v~~~~~Dl~d~ 74 (485)
+|||||||||||||++|++.|+++| ++|+++|+.... .. ........+ .......+++++.+|++|.
T Consensus 1 g~kILVTGatGfiG~~lv~~Ll~~g-~~V~~iDnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~Dl~d~ 79 (393)
T d1i24a_ 1 GSRVMVIGGDGYCGWATALHLSKKN-YEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALTGKSIELYVGDICDF 79 (393)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHHCCCCEEEESCTTSH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCc-CEEEEEecCCcccccccccccccccccchHHHHHHHHhhcCCCcEEEEccCCCH
Confidence 5899999999999999999999999 699998742110 00 000100001 1112356899999999999
Q ss_pred HHHHHHhcC--CCEEEEcCCCCC------CCCchhhhHHHHHHHHHHHHHHHHhcCC-CEEEEecCccccccCCCCc---
Q 047227 75 AQVLQALQG--AEVVFHMAAPNS------SINNHKLHHSVNVEGTKNVIDACAELKV-KRLIYTSSPSVVFDGVHGI--- 142 (485)
Q Consensus 75 ~~l~~~~~~--~d~Vih~aa~~~------~~~~~~~~~~~nv~~t~~ll~a~~~~~v-~r~V~~SS~~vy~~~~~~~--- 142 (485)
+.+.+++++ +|+|||+||... ....+..++.+|+.||.|++++|++.++ ++++++||..+|+......
T Consensus 80 ~~l~~~~~~~~~d~ViHlAa~~~~~~s~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~~i~~ss~~~~~~~~~~~~~~ 159 (393)
T d1i24a_ 80 EFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEFGEECHLVKLGTMGEYGTPNIDIEEG 159 (393)
T ss_dssp HHHHHHHHHHCCSEEEECCSCCCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEECCGGGGCCCSSCBCSS
T ss_pred HHHHHHHHhhcchheeccccccccccccccccccccccccccccccHHHHHHHHhccccceeeccccccccccccccccc
Confidence 999999975 799999999432 2234557889999999999999999985 4677777777765322111
Q ss_pred ------CCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhCCCCceEEEEecCCcccCCCC-------------------CC
Q 047227 143 ------INGNEALPYPPKHNDFYSATKAEGEALVIKANGTNGLLTCCIRPSSIFGPGDR-------------------LL 197 (485)
Q Consensus 143 ------~~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~-------------------~~ 197 (485)
...+++.+.+..|.++|+.+|..+|.++..++++++++++++||+++|||+.. ..
T Consensus 160 ~~~~~~~~~~~~~~~~~~p~~~Y~~sK~~aE~~~~~~~~~~~l~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (393)
T d1i24a_ 160 YITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVKTDETEMHEELRNRLDYDAVFGTA 239 (393)
T ss_dssp EEEEEETTEEEEEECCCCCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECSCCTTGGGSGGGCCCCCCSTTTCCH
T ss_pred cccccccccccccccccccccHHHHHhhhhcccccccccccceeeeecccccccCCCccccccccccccccccccccccc
Confidence 00112233467888999999999999999999889999999999999999753 13
Q ss_pred hHHHHHHHHcCCCeEEecCCCceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEe-eCCCCccHHHHHHHHHHHc
Q 047227 198 VPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFV-TNMESIKFWEFVSLILEGL 276 (485)
Q Consensus 198 ~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv-~~~~~~t~~el~~~i~~~~ 276 (485)
+..++..+..|+++.++|++.+.+||+||+|+++++..+++. ....++.+.+ ++++.+++.|+++.+.+..
T Consensus 240 i~~~~~~~~~~~~~~i~g~~~~~rd~v~v~D~~~a~~~~~~~--------~~~~g~~~~~~~~~~~~si~el~~~i~~~~ 311 (393)
T d1i24a_ 240 LNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVEIAIAN--------PAKAGEFRVFNQFTEQFSVNELASLVTKAG 311 (393)
T ss_dssp HHHHHHHHHHTCCEEEETTSCCEEEEEEHHHHHHHHHHHHHS--------CCCTTCEEEEEECSEEEEHHHHHHHHHHHH
T ss_pred hhhhhHHhhcCCeeEEeeecccccccccccchHHHHHHHHHh--------hcccceeeeecCCCCeeEHHHHHHHHHHHH
Confidence 677888899999999999999999999999999999999873 2233433322 4457889999999998875
Q ss_pred CC---CCCCccCCHHHHHHHHHHHHHHHHHhCCCCCCCCCCCHHHHHhhccceeeehhhHHhhcCCCCCCChHHHHHHHH
Q 047227 277 GY---QRPRIKIPAFVMMPIAHMVELTYRLLGPYGMKVPQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTV 353 (485)
Q Consensus 277 g~---~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~d~~ka~~~lG~~p~~~l~e~i~~~~ 353 (485)
+. ..+....+. |.. + ........|++|+++ |||+|++++++++++++
T Consensus 312 ~~~~~~~~~~~~~~------------------------~~~-~----~~~~~~~~d~~k~~~-LGw~P~~~~~~~i~~~~ 361 (393)
T d1i24a_ 312 SKLGLDVKKMTVPN------------------------PRV-E----AEEHYYNAKHTKLME-LGLEPHYLSDSLLDSLL 361 (393)
T ss_dssp HTTTCCCCEEEECC------------------------SSC-S----CSSCCCCBCCCHHHH-TTCCCCCCCHHHHHHHH
T ss_pred HhhCCCcceeeccC------------------------CCC-C----CCccEecCCHHHHHH-cCCccccCHHHHHHHHH
Confidence 43 222211110 100 0 011123458899986 99999999999999999
Q ss_pred HHHHHhHhc
Q 047227 354 DSYSHLRAE 362 (485)
Q Consensus 354 ~~~~~~~~~ 362 (485)
+|++++.+.
T Consensus 362 ~~~~~~k~~ 370 (393)
T d1i24a_ 362 NFAVQFKDR 370 (393)
T ss_dssp HHHHHTGGG
T ss_pred HHHHHHHHh
Confidence 999887765
|
| >d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Trypanosoma brucei [TaxId: 5691]
Probab=100.00 E-value=3.4e-41 Score=338.26 Aligned_cols=322 Identities=20% Similarity=0.224 Sum_probs=238.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHh-cCCceEEEeecCCcccc---CCccchhhh---------hhhhcCCCeEEEEecCCC
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIR-YDMFSVRIADLSDSIAL---EPHEEQGIL---------GEALRSGRAHYVSFDLRH 73 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~-~G~~~V~~~~r~~~~~~---~~~~~~~~~---------~~~~~~~~v~~~~~Dl~d 73 (485)
.|||||||||||||++|+++|++ .| ++|+++|+-..... ......... ........+.++.+|++|
T Consensus 2 ~MKVLITG~tGfIGs~lv~~LL~~~~-~~V~~~D~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d 80 (383)
T d1gy8a_ 2 HMRVLVCGGAGYIGSHFVRALLRDTN-HSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEVGDVRN 80 (383)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCC-CEEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEEESCTTC
T ss_pred cCEEEEeCCCcHHHHHHHHHHHHhCC-CEEEEEecCCcccccchhhhhhhhHHHHhhhhccccccccccceEEEECcccC
Confidence 48999999999999999999997 46 69999986322111 111000000 011123468899999999
Q ss_pred HHHHHHHhc---CCCEEEEcCCCCC---CCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCccccccCCCCcCCCCC
Q 047227 74 KAQVLQALQ---GAEVVFHMAAPNS---SINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVVFDGVHGIINGNE 147 (485)
Q Consensus 74 ~~~l~~~~~---~~d~Vih~aa~~~---~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy~~~~~~~~~~~e 147 (485)
.+.+.++++ ++|+|||+|+... ...++...+++|+.++.+++++|++.++++++++||.++|+.........++
T Consensus 81 ~~~l~~~~~~~~~~d~ViH~Aa~~~~~~~~~~~~~~~~~N~~~t~~~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 160 (383)
T d1gy8a_ 81 EDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGILRLLQAMLLHKCDKIIFSSSAAIFGNPTMGSVSTNA 160 (383)
T ss_dssp HHHHHHHHHHSCCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGTBSCCC-----CC
T ss_pred HHHhhhhhhccceeehhhcccccccccccccccccccccccccccccchhhhccCCcccccccccccccccccccccccc
Confidence 999999885 5799999999433 3346777889999999999999999999999999999999755433222211
Q ss_pred C---CCCCCCCCchHHHHHHHHHHHHHHHhCCCCceEEEEecCCcccCCCCC-----------ChHHHHH----------
Q 047227 148 A---LPYPPKHNDFYSATKAEGEALVIKANGTNGLLTCCIRPSSIFGPGDRL-----------LVPSLVA---------- 203 (485)
Q Consensus 148 ~---~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~~-----------~~~~~~~---------- 203 (485)
. ...+..|.++|+.+|..+|++++.+.+.++++++++||+++|||++.. .++.++.
T Consensus 161 ~~~~e~~~~~p~~~Y~~sK~~~e~~~~~~~~~~gl~~~~lR~~~vyG~~~~~~~~~~~~~~~~~ip~ii~~~~~~~~~~~ 240 (383)
T d1gy8a_ 161 EPIDINAKKSPESPYGESKLIAERMIRDCAEAYGIKGICLRYFNACGAHEDGDIGEHYQGSTHLIPIILGRVMSDIAPDQ 240 (383)
T ss_dssp CCBCTTSCCBCSSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECCCTTSSCSCCSTTCCSHHHHHHHHHHHHHSCC-
T ss_pred cccccccCCCCCCHHHhhHhHHHHHHHHHHHHhCCCEEEEecceeeccCccccccccccccchhHHHHHHHHHhhccccc
Confidence 1 112457899999999999999999998899999999999999998642 2333332
Q ss_pred ------HHHcCCCeEEec------CCCceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCCCccHHHHHHH
Q 047227 204 ------AARAGKSKFIIG------DGNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMESIKFWEFVSL 271 (485)
Q Consensus 204 ------~~~~g~~~~~~g------~g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~~t~~el~~~ 271 (485)
.+..++++.++| +|.+.|||+|++|+|++++.+++.....+.......+++||+++++++++.|+++.
T Consensus 241 ~~~~~~~~~~~~~~~i~g~~~~~~dg~~~Rdfi~v~D~~~a~~~~~~~~~~~~~~~~~~~~~i~Ni~s~~~~s~~el~~~ 320 (383)
T d1gy8a_ 241 RLTIHEDASTDKRMPIFGTDYPTPDGTCVRDYVHVCDLASAHILALDYVEKLGPNDKSKYFSVFNLGTSRGYSVREVIEV 320 (383)
T ss_dssp ----------CCCEEEECSCSSSTTSSCEECEEEHHHHHHHHHHHHHHHHTCCTTTGGGSEEEEEESCSCCEEHHHHHHH
T ss_pred cchhhhhhhcCCceEEeCCccccCCCCeEEeeEEHHHHHHHHHHHHhhhccccccccccCccEEEeCCCCceeHHHHHHH
Confidence 234456666665 47889999999999999999998765432112335678999999999999999999
Q ss_pred HHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCCCCCCCCHHHHHhhccceeeehhhHHhhcCCCCCCChHHHHHH
Q 047227 272 ILEGLGYQRPRIKIPAFVMMPIAHMVELTYRLLGPYGMKVPQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKR 351 (485)
Q Consensus 272 i~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~d~~ka~~~lG~~p~~~l~e~i~~ 351 (485)
+.+.+|.+.+....+. .+ .. ......|++|++++|||+|+++++|++++
T Consensus 321 i~~~~~~~~~~~~~~~-----------------------~~----~d----~~~~~~d~~k~~k~LGw~P~~~l~e~i~~ 369 (383)
T d1gy8a_ 321 ARKTTGHPIPVRECGR-----------------------RE----GD----PAYLVAASDKAREVLGWKPKYDTLEAIME 369 (383)
T ss_dssp HHHHHCCCCCEEEECC-----------------------CT----TC----CSEECBCCHHHHHHTCCCCSCCSHHHHHH
T ss_pred HHHHhCCCCceEECCC-----------------------CC----CC----cCEeeeCHHHHHHHHCCccCCCHHHHHHH
Confidence 9999998766543221 00 00 11234699999999999999999999999
Q ss_pred H-HHHHHHhH
Q 047227 352 T-VDSYSHLR 360 (485)
Q Consensus 352 ~-~~~~~~~~ 360 (485)
+ +.||+.++
T Consensus 370 t~~~w~~~~~ 379 (383)
T d1gy8a_ 370 TSWKFQRTHP 379 (383)
T ss_dssp HHHHHHHTCT
T ss_pred HHHHHHHhCc
Confidence 7 58887754
|
| >d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=3.7e-41 Score=328.86 Aligned_cols=293 Identities=17% Similarity=0.181 Sum_probs=229.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc--CC
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ--GA 84 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--~~ 84 (485)
.|||||||||||||++|+++|+++|+ .|+++++... .|++|.+.+.++++ ++
T Consensus 2 kkkIlITG~tGfiG~~l~~~L~~~g~-~vi~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~ 55 (315)
T d1e6ua_ 2 KQRVFIAGHRGMVGSAIRRQLEQRGD-VELVLRTRDE-------------------------LNLLDSRAVHDFFASERI 55 (315)
T ss_dssp CEEEEEETTTSHHHHHHHHHHTTCTT-EEEECCCTTT-------------------------CCTTCHHHHHHHHHHHCC
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCcC-EEEEecCchh-------------------------ccccCHHHHHHHHhhcCC
Confidence 47999999999999999999999994 6766654321 58999999999886 49
Q ss_pred CEEEEcCCCCCC----CCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCccccccCCCCcCCCCCCCCC---CCCCCc
Q 047227 85 EVVFHMAAPNSS----INNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVVFDGVHGIINGNEALPY---PPKHND 157 (485)
Q Consensus 85 d~Vih~aa~~~~----~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy~~~~~~~~~~~e~~~~---~~~~~~ 157 (485)
|+|+|+|+.... ..++..++++|+.||.+++++|++.+++||||+||.+||++..... .+|+.+. +..+.+
T Consensus 56 d~v~~~a~~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~v~~~i~~SS~~vyg~~~~~~--~~E~~~~~~~~~~~~~ 133 (315)
T d1e6ua_ 56 DQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVNKLLFLGSSCIYPKLAKQP--MAESELLQGTLEPTNE 133 (315)
T ss_dssp SEEEECCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECCGGGSCTTCCSS--BCGGGTTSSCCCGGGH
T ss_pred CEEEEcchhccccccchhhHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECCceEcCCCCCCC--ccCCccccCCCCCCCC
Confidence 999999984322 3356677899999999999999999999999999999997544333 3333222 233456
Q ss_pred hHHHHHHHHHHHHHHHhCCCCceEEEEecCCcccCCCCC------C-----hHHHHHHHHcCCCeEEecCCCceeecccH
Q 047227 158 FYSATKAEGEALVIKANGTNGLLTCCIRPSSIFGPGDRL------L-----VPSLVAAARAGKSKFIIGDGNNVYDFTYV 226 (485)
Q Consensus 158 ~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~~------~-----~~~~~~~~~~g~~~~~~g~g~~~~~~i~v 226 (485)
+|+.+|..+|++++.+.+++|++++++||++||||+++. . ..........+..+.+.|++.+.++|+|+
T Consensus 134 ~Y~~sK~~~E~~~~~~~~~~gl~~~ilR~~~vyGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~v 213 (315)
T d1e6ua_ 134 PYAIAKIAGIKLCESYNRQYGRDYRSVMPTNLYGPHDNFHPSNSHVIPALLRRFHEATAQKAPDVVVWGSGTPMREFLHV 213 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEESTTCCCCTTCSSHHHHHHHHHHHHHHHTCSEEEEESCSCCEECEEEH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCEEEEeeccEECCCCCCCccccccceeeeccchhhhhccCCceEEcCCCceEEEEEEe
Confidence 899999999999999998889999999999999997642 1 22234566778889999999999999999
Q ss_pred HHHHHHHHHHHHHhccccchhhccCCcEEEeeCCCCccHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhCC
Q 047227 227 ANVAHAHICAERALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELTYRLLGP 306 (485)
Q Consensus 227 ~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~~t~~el~~~i~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 306 (485)
+|+++++..++++...............++++.+.+.+..++++.+.+.+|.+......+.
T Consensus 214 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~i~~~~~------------------- 274 (315)
T d1e6ua_ 214 DDMAAASIHVMELAHEVWLENTQPMLSHINVGTGVDCTIRELAQTIAKVVGYKGRVVFDAS------------------- 274 (315)
T ss_dssp HHHHHHHHHHHHSCHHHHHHTSBTTBCCEEESCSCCEEHHHHHHHHHHHHTCCSEEEEETT-------------------
T ss_pred ehhHHHHHHhhhhccccccccccccccccccCCCcchHHHHHHHHHHHHhCCCcceEECCC-------------------
Confidence 9999999999875443211122244568999999999999999999999998754332111
Q ss_pred CCCCCCCCCHHHHHhhccceeeehhhHHhhcCCCCCCChHHHHHHHHHHHHHh
Q 047227 307 YGMKVPQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSYSHL 359 (485)
Q Consensus 307 ~~~~~p~~~~~~~~~~~~~~~~d~~ka~~~lG~~p~~~l~e~i~~~~~~~~~~ 359 (485)
.|. ....+..|++|+++ |||+|+++++|+|+++++||+++
T Consensus 275 ----~~~--------~~~~~~~d~sk~k~-Lg~~p~~~l~e~i~~ti~w~~~N 314 (315)
T d1e6ua_ 275 ----KPD--------GTPRKLLDVTRLHQ-LGWYHEISLEAGLASTYQWFLEN 314 (315)
T ss_dssp ----SCC--------CCSBCCBCCHHHHH-TTCCCCCCHHHHHHHHHHHHHHT
T ss_pred ----CCC--------CCceeccCHHHHHH-cCCCCCCCHHHHHHHHHHHHHHc
Confidence 110 01123569999975 99999999999999999999863
|
| >d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-tyvelose-2-epimerase species: Salmonella typhi [TaxId: 90370]
Probab=100.00 E-value=1.5e-39 Score=319.78 Aligned_cols=306 Identities=21% Similarity=0.259 Sum_probs=235.7
Q ss_pred EEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcC--CCE
Q 047227 9 LCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQG--AEV 86 (485)
Q Consensus 9 ~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~--~d~ 86 (485)
||||||||||||++|++.|+++| ++|+++|+-.... ....+......++++++.+|++|.+.+.+++++ +|+
T Consensus 2 KILVTGatGfIGs~lv~~Ll~~g-~~V~~id~~~~~~-----~~~~~~~~~~~~~~~~i~~Di~~~~~l~~~~~~~~~d~ 75 (338)
T d1orra_ 2 KLLITGGCGFLGSNLASFALSQG-IDLIVFDNLSRKG-----ATDNLHWLSSLGNFEFVHGDIRNKNDVTRLITKYMPDS 75 (338)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCCSTT-----HHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHCCSE
T ss_pred EEEEECCCcHHHHHHHHHHHHCc-CEEEEEECCCccc-----chhHHHHhhccCCcEEEEcccCCHHHHHHHHHhcCCce
Confidence 79999999999999999999999 5999988543211 111122333457899999999999999999976 799
Q ss_pred EEEcCCCCC---CCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCccccccCCCCc-CC------------CCCCCC
Q 047227 87 VFHMAAPNS---SINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVVFDGVHGI-IN------------GNEALP 150 (485)
Q Consensus 87 Vih~aa~~~---~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy~~~~~~~-~~------------~~e~~~ 150 (485)
|||+|+... ...++...+++|+.||.||+++|++.+++++|+.||.++++...... .. ......
T Consensus 76 Vih~aa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~i~~sS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (338)
T d1orra_ 76 CFHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNIIYSSTNKVYGDLEQYKYNETETRYTCVDKPNGYDES 155 (338)
T ss_dssp EEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEGGGGTTCTTSCEEECSSCEEETTCTTCBCTT
T ss_pred EEeecccccccccccChHHHHHHHHHHHHHHHHhhhcccccccccccccccccccccccccccccccccccccccCcccC
Confidence 999999543 23477889999999999999999999987777777766665432211 10 111111
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHhCCCCceEEEEecCCcccCCCC-----CChHHHHHHHH-----cCCCeEEecCCCce
Q 047227 151 YPPKHNDFYSATKAEGEALVIKANGTNGLLTCCIRPSSIFGPGDR-----LLVPSLVAAAR-----AGKSKFIIGDGNNV 220 (485)
Q Consensus 151 ~~~~~~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~-----~~~~~~~~~~~-----~g~~~~~~g~g~~~ 220 (485)
.+..|.+.|+.+|..+|.++..+.+.++...+++|++++||+... ..++.++..+. .++++.++|+|++.
T Consensus 156 ~~~~~~~~y~~~k~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~ 235 (338)
T d1orra_ 156 TQLDFHSPYGCSKGAADQYMLDYARIFGLNTVVFRHSSMYGGRQFATYDQGWVGWFCQKAVEIKNGINKPFTISGNGKQV 235 (338)
T ss_dssp SCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTCCCBTTBCHHHHHHHHHHHHHTTCCCCEEEESSSCCE
T ss_pred CccccccccccccchhhhhhhhhhhccCcccccccccceeeccccccccccccchhhHHHHHHHhccCCceEEeCCCcee
Confidence 245688899999999999999988888999999999999987543 23455554443 47789999999999
Q ss_pred eecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCC--CCccHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHH
Q 047227 221 YDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNM--ESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVE 298 (485)
Q Consensus 221 ~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~--~~~t~~el~~~i~~~~g~~~~~~~~p~~~~~~~~~~~~ 298 (485)
++|+|++|++++++.+++.. ....|++||+..+ +.+++.|+++.+.+.+|.+.+....+..
T Consensus 236 r~~~~v~D~~~~~~~~l~~~-------~~~~~~~~~i~~~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~---------- 298 (338)
T d1orra_ 236 RDVLHAEDMISLYFTALANV-------SKIRGNAFNIGGTIVNSLSLLELFKLLEDYCNIDMRFTNLPVR---------- 298 (338)
T ss_dssp EECEEHHHHHHHHHHHHHTH-------HHHTTCEEEESSCGGGEEEHHHHHHHHHHHHTCCCCEEEECCC----------
T ss_pred EeeecccchhhHHHHHHhcc-------ccccCccccccccccccccHHHHHHHHHHHHCCCceeEeCCCC----------
Confidence 99999999999999998742 2256889999554 6789999999999999987665443320
Q ss_pred HHHHHhCCCCCCCCCCCHHHHHhhccceeeehhhHHhhcCCCCCCChHHHHHHHHHHHHH
Q 047227 299 LTYRLLGPYGMKVPQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSYSH 358 (485)
Q Consensus 299 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~d~~ka~~~lG~~p~~~l~e~i~~~~~~~~~ 358 (485)
| . ....+..|++|+++.|||+|+++++|+|+++++||+.
T Consensus 299 -------------~----~----~~~~~~~d~~k~~~~Lg~~p~~sl~e~i~~ti~W~k~ 337 (338)
T d1orra_ 299 -------------E----S----DQRVFVADIKKITNAIDWSPKVSAKDGVQKMYDWTSS 337 (338)
T ss_dssp -------------S----S----CCSEECBCCHHHHHHHCCCCCSCHHHHHHHHHHHHHH
T ss_pred -------------C----C----CcCeeeECHHHHHHHHCCCcCCCHHHHHHHHHHHHHc
Confidence 0 0 0112345999999999999999999999999999986
|
| >d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=100.00 E-value=8.2e-40 Score=322.38 Aligned_cols=311 Identities=18% Similarity=0.182 Sum_probs=232.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCC-ccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc--CC
Q 047227 8 RLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEP-HEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ--GA 84 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--~~ 84 (485)
|++||||||||||+||++.|+++| ++|++++|..+..... ...............++++.+|+++.+.+.+.++ ++
T Consensus 2 k~~LVTGatGfiG~~lv~~Ll~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~~~~~~~~~~~~~~~ 80 (339)
T d1n7ha_ 2 KIALITGITGQDGSYLTEFLLGKG-YEVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLHYADLTDASSLRRWIDVIKP 80 (339)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCCSSCCCTTTTTTC--------CCEEEEECCTTCHHHHHHHHHHHCC
T ss_pred CEEEEeCCccHHHHHHHHHHHHCc-CEEEEEECCCcccchhhhhhhhhhhhhccccceEEEEccccCHHHHHHHHhhhcc
Confidence 789999999999999999999999 5999999865421111 0010001111234578899999999999999886 58
Q ss_pred CEEEEcCCCCC---CCCchhhhHHHHHHHHHHHHHHHHhcC-----CCEEEEecCccccccCCCCcCCCCCCCCCCCCCC
Q 047227 85 EVVFHMAAPNS---SINNHKLHHSVNVEGTKNVIDACAELK-----VKRLIYTSSPSVVFDGVHGIINGNEALPYPPKHN 156 (485)
Q Consensus 85 d~Vih~aa~~~---~~~~~~~~~~~nv~~t~~ll~a~~~~~-----v~r~V~~SS~~vy~~~~~~~~~~~e~~~~~~~~~ 156 (485)
|+|||+|+... ...+|...+..|+.++.++++++++.+ ..++++.||..+|+... .+.+|+. |..|.
T Consensus 81 D~Vih~Aa~~~~~~~~~~p~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~~~~~~---~~~~E~~--~~~p~ 155 (339)
T d1n7ha_ 81 DEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHTIDSGRTVKYYQAGSSEMFGSTP---PPQSETT--PFHPR 155 (339)
T ss_dssp SEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEEEGGGGTTSC---SSBCTTS--CCCCC
T ss_pred chhhhccccccccccccCccccccccccccchhhhhhhhcccccccceeeeecccceecccCC---CCCCCCC--CCCCc
Confidence 99999999543 235788899999999999999998653 45788888877765332 2334544 36799
Q ss_pred chHHHHHHHHHHHHHHHhCCCCceEEEEecCCcccCCCCC-C----hHH-HHHHHHcCCCeEEecCCCceeecccHHHHH
Q 047227 157 DFYSATKAEGEALVIKANGTNGLLTCCIRPSSIFGPGDRL-L----VPS-LVAAARAGKSKFIIGDGNNVYDFTYVANVA 230 (485)
Q Consensus 157 ~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~~-~----~~~-~~~~~~~g~~~~~~g~g~~~~~~i~v~D~a 230 (485)
+.|+.+|..+|+++..+.+.++++++++||+++|||+... . +.. +...........+.|++.+.+||+|++|+|
T Consensus 156 ~~Y~~sK~~~E~~~~~~~~~~~~~~~ilR~~~vyGp~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~~~~~rd~~~v~D~a 235 (339)
T d1n7ha_ 156 SPYAASKCAAHWYTVNYREAYGLFACNGILFNHESPRRGENFVTRKITRALGRIKVGLQTKLFLGNLQASRDWGFAGDYV 235 (339)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCTTSHHHHHHHHHHHHHHTSCCCEEESCTTCEEECEEHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHhCCCEEEEEEccccCCCCCCCCCcchhhHHHHHHhcCCCCeEEeCCCCccccceeeehHH
Confidence 9999999999999999998889999999999999997542 2 222 233445556667889999999999999999
Q ss_pred HHHHHHHHHhccccchhhccCCcEEEeeCCCCccHHHHHHHHHHHcCCCCCCcc-CCHHHHHHHHHHHHHHHHHhCCCCC
Q 047227 231 HAHICAERALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIK-IPAFVMMPIAHMVELTYRLLGPYGM 309 (485)
Q Consensus 231 ~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~~t~~el~~~i~~~~g~~~~~~~-~p~~~~~~~~~~~~~~~~~~~~~~~ 309 (485)
+++..+++. ..+..+++..+...+..++++.+.+.+|....... +...
T Consensus 236 ~~~~~~~~~----------~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~--------------------- 284 (339)
T d1n7ha_ 236 EAMWLMLQQ----------EKPDDYVVATEEGHTVEEFLDVSFGYLGLNWKDYVEIDQR--------------------- 284 (339)
T ss_dssp HHHHHHHTS----------SSCCEEEECCSCEEEHHHHHHHHHHHTTCCGGGTEEECGG---------------------
T ss_pred HHHHHHHhc----------CCCCccccccccccccchhhhhhhhhhhcccCceeeeccC---------------------
Confidence 999988763 33456778888899999999999999987543211 1100
Q ss_pred CCCCCCHHHHHhhccceeeehhhHHhhcCCCCCCChHHHHHHHHHHHHHhHhc
Q 047227 310 KVPQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSYSHLRAE 362 (485)
Q Consensus 310 ~~p~~~~~~~~~~~~~~~~d~~ka~~~lG~~p~~~l~e~i~~~~~~~~~~~~~ 362 (485)
...|.. ...+..|++|+++.|||+|+++++|+|++|++||.+....
T Consensus 285 ---~~r~~~----~~~~~~d~~Kak~~LGw~P~~~le~gi~~ti~~~~~~~~~ 330 (339)
T d1n7ha_ 285 ---YFRPAE----VDNLQGDASKAKEVLGWKPQVGFEKLVKMMVDEDLELAKR 330 (339)
T ss_dssp ---GSCSSC----CCBCCBCCHHHHHHHCCCCCSCHHHHHHHHHHHHHHHHHH
T ss_pred ---CCCCCC----CCeeeECHHHHHHHHCCCcCCCHHHHHHHHHHHHHHHHhh
Confidence 000000 1123459999999999999999999999999999887553
|
| >d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-glucose-4,6-dehydratase species: Yersinia pseudotuberculosis [TaxId: 633]
Probab=100.00 E-value=7.4e-38 Score=310.39 Aligned_cols=314 Identities=21% Similarity=0.234 Sum_probs=234.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc--C
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ--G 83 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--~ 83 (485)
++|||||||||||||+++++.|+++| ++|++++|....... .+......++++++.+|++|++.+.++++ .
T Consensus 7 ~~KkILVTG~tGfIGs~lv~~Ll~~g-~~V~~~~r~~~~~~~------~~~~~~~~~~i~~~~~Dl~d~~~l~~~~~~~~ 79 (356)
T d1rkxa_ 7 QGKRVFVTGHTGFKGGWLSLWLQTMG-ATVKGYSLTAPTVPS------LFETARVADGMQSEIGDIRDQNKLLESIREFQ 79 (356)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSCSSSSC------HHHHTTTTTTSEEEECCTTCHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCCCccHH------HHhhhhcccCCeEEEeeccChHhhhhhhhhch
Confidence 57999999999999999999999999 599999987553221 12222224579999999999999999987 4
Q ss_pred CCEEEEcCCCCC---CCCchhhhHHHHHHHHHHHHHHHHhcCC-CEEEEecCccccccCCCCcCCCCCCCCCCCCCCchH
Q 047227 84 AEVVFHMAAPNS---SINNHKLHHSVNVEGTKNVIDACAELKV-KRLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDFY 159 (485)
Q Consensus 84 ~d~Vih~aa~~~---~~~~~~~~~~~nv~~t~~ll~a~~~~~v-~r~V~~SS~~vy~~~~~~~~~~~e~~~~~~~~~~~Y 159 (485)
+|+|+|+|+... +..++...+.+|+.|+.+++++|++.+. +.+++.|| ++++.+.....+.+++. +..|.++|
T Consensus 80 ~~~v~~~aa~~~~~~~~~~~~~~~~~Nv~g~~n~l~~~~~~~~~~~~~~~s~-~~~~~~~~~~~~~~~~~--~~~p~~~y 156 (356)
T d1rkxa_ 80 PEIVFHMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGGVKAVVNITS-DKCYDNKEWIWGYRENE--AMGGYDPY 156 (356)
T ss_dssp CSEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHCCCCEEEEECC-GGGBCCCCSSSCBCTTS--CBCCSSHH
T ss_pred hhhhhhhhccccccccccCCccccccccccchhhhhhhhccccccccccccc-ccccccccccccccccc--ccCCCCcc
Confidence 899999999433 3457888999999999999999999874 45555555 45544444444445544 36788999
Q ss_pred HHHHHHHHHHHHHHhC---------CCCceEEEEecCCcccCCCC---CChHHHHHHHHcCCCeEEecCCCceeecccHH
Q 047227 160 SATKAEGEALVIKANG---------TNGLLTCCIRPSSIFGPGDR---LLVPSLVAAARAGKSKFIIGDGNNVYDFTYVA 227 (485)
Q Consensus 160 ~~sK~~~E~~~~~~~~---------~~g~~~~ilRp~~v~Gp~~~---~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~ 227 (485)
+.+|..+|..+..+.. .+++.++++||+++|||++. .+++.+++....+. ..+++++++.++++|++
T Consensus 157 ~~~k~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~vyGp~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~v~ 235 (356)
T d1rkxa_ 157 SNSKGCAELVTSSYRNSFFNPANYGQHGTAVATVRAGNVIGGGDWALDRIVPDILRAFEQSQ-PVIIRNPHAIRPWQHVL 235 (356)
T ss_dssp HHHHHHHHHHHHHHHHHHSCGGGHHHHCCEEEEEECCCEECTTCCCSSCHHHHHHHHHHTTC-CEECSCTTCEECCEETH
T ss_pred ccccccchhhhhHHhhhcccchhccccCceEEeccCCCeeCCCcchhhHHHHHHHHHHhCCC-ceEEeeccccccccccc
Confidence 9999999999887654 34688999999999999863 35666777766555 45788999999999999
Q ss_pred HHHHHHHHHHHHhccccchhhccCCcEEEeeCCCCccHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhCCC
Q 047227 228 NVAHAHICAERALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELTYRLLGPY 307 (485)
Q Consensus 228 D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~~t~~el~~~i~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 307 (485)
|++.++..++......+ .....+..++.+.+..++..++++.+.+.++........+..
T Consensus 236 D~~~a~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~------------------- 294 (356)
T d1rkxa_ 236 EPLSGYLLLAQKLYTDG--AEYAEGWNFGPNDADATPVKNIVEQMVKYWGEGASWQLDGNA------------------- 294 (356)
T ss_dssp HHHHHHHHHHHHHHHTC--GGGCSEEECCCCGGGCEEHHHHHHHHHHHHCTTCCEEC-----------------------
T ss_pred cccchhhhhhhhhcccc--cccccccccccccccccccchhhhhhHHHhCCCccEEEcCCC-------------------
Confidence 99999998887544321 011122233344457899999999999999976554321110
Q ss_pred CCCCCCCCHHHHHhhccceeeehhhHHhhcCCCCCCChHHHHHHHHHHHHHhHhc
Q 047227 308 GMKVPQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSYSHLRAE 362 (485)
Q Consensus 308 ~~~~p~~~~~~~~~~~~~~~~d~~ka~~~lG~~p~~~l~e~i~~~~~~~~~~~~~ 362 (485)
.|. ....+..|++|++++|||+|+++++|+|++|++||++..+.
T Consensus 295 -------~~~----~~~~~~~d~skak~~LGw~P~~~l~egi~~ti~wyk~~~~~ 338 (356)
T d1rkxa_ 295 -------HPH----EAHYLKLDCSKAKMQLGWHPRWNLNTTLEYIVGWHKNWLSG 338 (356)
T ss_dssp --------------CCCCCCBCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHTT
T ss_pred -------CCC----CcCeeeEcHHHHHHHHCCCcCCCHHHHHHHHHHHHHHHHcC
Confidence 001 11234579999999999999999999999999999986554
|
| >d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Aldehyde reductase II species: Sporobolomyces salmonicolor [TaxId: 5005]
Probab=100.00 E-value=3.3e-37 Score=304.30 Aligned_cols=308 Identities=20% Similarity=0.130 Sum_probs=222.1
Q ss_pred CCCCCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHh
Q 047227 2 SGEENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQAL 81 (485)
Q Consensus 2 ~~~~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~ 81 (485)
....++++|||||||||||++++++|+++| ++|+++.|+.+..... ...............+.+|++|.+++.+++
T Consensus 6 ~~~~~gk~VlVTG~sGfIGs~l~~~Ll~~G-~~V~~~vR~~~~~~~~---~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~ 81 (342)
T d1y1pa1 6 AVLPEGSLVLVTGANGFVASHVVEQLLEHG-YKVRGTARSASKLANL---QKRWDAKYPGRFETAVVEDMLKQGAYDEVI 81 (342)
T ss_dssp CSSCTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSHHHHHHH---HHHHHHHSTTTEEEEECSCTTSTTTTTTTT
T ss_pred CCCCCcCEEEEECCCCHHHHHHHHHHHHCc-CEEEEEeCCchhHHHH---HHhhhccccccccEEEeccccchhhhhhhc
Confidence 344568999999999999999999999999 6999888764321100 000111111233455779999999999999
Q ss_pred cCCCEEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhc-CCCEEEEecCccccccCCCC--cCCCCCC----------
Q 047227 82 QGAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAEL-KVKRLIYTSSPSVVFDGVHG--IINGNEA---------- 148 (485)
Q Consensus 82 ~~~d~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~-~v~r~V~~SS~~vy~~~~~~--~~~~~e~---------- 148 (485)
.++|+|+|+++......++..++..|+.||.|++++|++. ++++|||+||..+++.+... ....+|+
T Consensus 82 ~~~~~v~~~a~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~~~v~~~i~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 161 (342)
T d1y1pa1 82 KGAAGVAHIASVVSFSNKYDEVVTPAIGGTLNALRAAAATPSVKRFVLTSSTVSALIPKPNVEGIYLDEKSWNLESIDKA 161 (342)
T ss_dssp TTCSEEEECCCCCSCCSCHHHHHHHHHHHHHHHHHHHHTCTTCCEEEEECCGGGTCCCCTTCCCCEECTTCCCHHHHHHH
T ss_pred ccchhhhhhcccccccccccccccchhhhHHHHHHhhhcccccccccccccceeeccCCCCCCCcccccccccccccccc
Confidence 9999999999977767778888999999999999999997 59999999998765422211 1111111
Q ss_pred ----CCCCCCCCchHHHHHHHHHHHHHHHhCCC--CceEEEEecCCcccCCC-----CCChHHHHHHHHcCCCeEEecCC
Q 047227 149 ----LPYPPKHNDFYSATKAEGEALVIKANGTN--GLLTCCIRPSSIFGPGD-----RLLVPSLVAAARAGKSKFIIGDG 217 (485)
Q Consensus 149 ----~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~--g~~~~ilRp~~v~Gp~~-----~~~~~~~~~~~~~g~~~~~~g~g 217 (485)
...+..|.++|+.+|..+|++++.+.+++ +++++++||+++|||.. ......++..+.+|+..... .+
T Consensus 162 ~~~~e~~~~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~~~~i~p~~v~Gp~~~~~~~~~~~~~~~~~l~~g~~~~~~-~~ 240 (342)
T d1y1pa1 162 KTLPESDPQKSLWVYAASKTEAELAAWKFMDENKPHFTLNAVLPNYTIGTIFDPETQSGSTSGWMMSLFNGEVSPAL-AL 240 (342)
T ss_dssp HHSCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHCCSSEEEEEEESEEECCCSCTTTCCCHHHHHHHHHHTTCCCHHH-HT
T ss_pred ccccccCCCCCcCcccchhHhHHHHHHHhhhhcccccccceecccceeCCCCCccccccchHHHHHHHHcCCcCccc-CC
Confidence 11245677889999999999998887653 57889999999999853 23466777888888765443 45
Q ss_pred CceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCCCccHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHH
Q 047227 218 NNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMV 297 (485)
Q Consensus 218 ~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~~t~~el~~~i~~~~g~~~~~~~~p~~~~~~~~~~~ 297 (485)
++.++|+|++|+|++++.+++. +...| .|++++++++++.|+++.|.+.++.......+|.
T Consensus 241 ~~~~~~v~v~Dva~~~i~~l~~--------~~~~g-~~~~~~~~~~t~~eia~~i~k~~p~~~~~~~~~~---------- 301 (342)
T d1y1pa1 241 MPPQYYVSAVDIGLLHLGCLVL--------PQIER-RRVYGTAGTFDWNTVLATFRKLYPSKTFPADFPD---------- 301 (342)
T ss_dssp CCSEEEEEHHHHHHHHHHHHHC--------TTCCS-CEEEECCEEECHHHHHHHHHHHCTTSCCCCCCCC----------
T ss_pred ccceeeeeHHHHHHHHHHhhcC--------ccccc-eEEEEcCCceEHHHHHHHHHHHcCCCcCCccCCc----------
Confidence 6778999999999999988773 22334 4668888999999999999998743211111111
Q ss_pred HHHHHHhCCCCCCCCCCCHHHHHhhccceee---ehhhHHhhcCCCCCCChHHHHHHHHHHH
Q 047227 298 ELTYRLLGPYGMKVPQLTPSRVRLLSCSRTF---DCSKAKDLLGYMPIVPLEEGIKRTVDSY 356 (485)
Q Consensus 298 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~---d~~ka~~~lG~~p~~~l~e~i~~~~~~~ 356 (485)
..+. ...+ .+.+..+.|||+|..+++|+|+++++++
T Consensus 302 ------------~~~~-----------~~~~~~~~s~~~~k~lg~~~~~~lee~i~d~I~s~ 340 (342)
T d1y1pa1 302 ------------QGQD-----------LSKFDTAPSLEILKSLGRPGWRSIEESIKDLVGSE 340 (342)
T ss_dssp ------------CCCC-----------CCEECCHHHHHHHHHTTCCSCCCHHHHHHHHHCCS
T ss_pred ------------cCcc-----------cccccchHHHHHHHHcCCCCCcCHHHHHHHHHHhC
Confidence 0000 0111 2344455699999999999999999764
|
| >d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: ADP-L-glycero-D-mannoheptose 6-epimerase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=7.6e-35 Score=281.75 Aligned_cols=291 Identities=18% Similarity=0.195 Sum_probs=198.1
Q ss_pred EEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHH-HHHHh-----cC
Q 047227 10 CVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQ-VLQAL-----QG 83 (485)
Q Consensus 10 iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~-l~~~~-----~~ 83 (485)
||||||+||||++|++.|+++|+++|+++|+-.... . ....... ...|..+.+. ....+ ..
T Consensus 2 ILITGgsGfIGs~lv~~L~~~g~~~V~~~d~~~~~~----~----~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~ 68 (307)
T d1eq2a_ 2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGT----K----FVNLVDL-----NIADYMDKEDFLIQIMAGEEFGD 68 (307)
T ss_dssp EEEETTTSHHHHHHHHHHHTTTCCCEEEEECCSSGG----G----GHHHHTS-----CCSEEEEHHHHHHHHHTTCCCSS
T ss_pred EEEecCccHHHHHHHHHHHhCCCCeEEEEECCCCcc----h----hhccccc-----chhhhccchHHHHHHhhhhcccc
Confidence 899999999999999999999966899987543211 0 0011111 1122222222 22222 35
Q ss_pred CCEEEEcCCC-CCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCccccccCCCCcCCCCCCCCCCCCCCchHHHH
Q 047227 84 AEVVFHMAAP-NSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDFYSAT 162 (485)
Q Consensus 84 ~d~Vih~aa~-~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy~~~~~~~~~~~e~~~~~~~~~~~Y~~s 162 (485)
+++|+|+|+. .....+.....+.|+.++.+++++++..+++ +++.||..+|++......++++ +..|.+.|+.+
T Consensus 69 ~~~i~~~aa~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~-~v~~ss~~~~~~~~~~~~~~~~----~~~~~~~Y~~~ 143 (307)
T d1eq2a_ 69 VEAIFHEGACSSTTEWDGKYMMDNNYQYSKELLHYCLEREIP-FLYASSAATYGGRTSDFIESRE----YEKPLNVYGYS 143 (307)
T ss_dssp CCEEEECCSCCCTTCCCHHHHHHHTHHHHHHHHHHHHHHTCC-EEEEEEGGGGTTCCSCBCSSGG----GCCCSSHHHHH
T ss_pred hhhhhhhccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccc----ccccccccccc
Confidence 8999999993 3445566778899999999999999999985 6777777777644433333332 35788999999
Q ss_pred HHHHHHHHHHHhCCCCceEEEEecCCcccCCCC------CChHHHHHHHHcCCCeEE-ecCCCceeecccHHHHHHHHHH
Q 047227 163 KAEGEALVIKANGTNGLLTCCIRPSSIFGPGDR------LLVPSLVAAARAGKSKFI-IGDGNNVYDFTYVANVAHAHIC 235 (485)
Q Consensus 163 K~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~------~~~~~~~~~~~~g~~~~~-~g~g~~~~~~i~v~D~a~a~~~ 235 (485)
|..+|.+++.++++++++++++||+++|||+.. ..+..+...+..++...+ .|+++..++|+|++|++.++..
T Consensus 144 K~~~e~~~~~~~~~~~~~~~~~r~~~vyGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~r~~~~v~d~~~~~~~ 223 (307)
T d1eq2a_ 144 KFLFDEYVRQILPEANSQIVGFRYFNVYGPREGHKGSMASVAFHLNTQLNNGESPKLFEGSENFKRDFVYVGDVADVNLW 223 (307)
T ss_dssp HHHHHHHHHHHGGGCSSCEEEEEECEEESSSCGGGGGGSCHHHHHHHHHHC-------------CBCEEEHHHHHHHHHH
T ss_pred cchhhhhccccccccccccccccceeEeeccccccccccccccccccccccccceeeecCccceeeeeeecccHHHHHHH
Confidence 999999999999999999999999999999763 245566777777765544 5788889999999999999998
Q ss_pred HHHHhccccchhhccCCcEEEeeCCCCccHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCCCCCCCC
Q 047227 236 AERALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELTYRLLGPYGMKVPQLT 315 (485)
Q Consensus 236 ~~~~~~~~~~~~~~~~g~~ynv~~~~~~t~~el~~~i~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 315 (485)
+++. ...+.||++++++.+++|+++.+.+..+.. ....+|. |.
T Consensus 224 ~~~~----------~~~~~~~~~~~~~~si~~i~~~i~~~~~~~-~i~~~~~------------------------~~-- 266 (307)
T d1eq2a_ 224 FLEN----------GVSGIFNLGTGRAESFQAVADATLAYHKKG-QIEYIPF------------------------PD-- 266 (307)
T ss_dssp HHHH----------CCCEEEEESCSCCBCHHHHHHHC-------------------------------------------
T ss_pred Hhhh----------ccccccccccccchhHHHHHHHHHHhcCCC-CeeEeeC------------------------Cc--
Confidence 8763 345789999999999999999987765432 1111110 00
Q ss_pred HHHHHhhccceeeehhhHHhhcCCCCCCChHHHHHHHHHHH
Q 047227 316 PSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSY 356 (485)
Q Consensus 316 ~~~~~~~~~~~~~d~~ka~~~lG~~p~~~l~e~i~~~~~~~ 356 (485)
............|++|+++.+||+|.++++|+|+++++|+
T Consensus 267 -~~~~~~~~~~~~d~~k~~~~~~~~p~~sl~egi~~~i~w~ 306 (307)
T d1eq2a_ 267 -KLKGRYQAFTQADLTNLRAAGYDKPFKTVAEGVTEYMAWL 306 (307)
T ss_dssp ------CCCSCCBCCHHHHHTTCCCCCCCHHHHHHHHHHHT
T ss_pred -cCCCCCceeeecCHHHHHHHHCCCCCCCHHHHHHHHHHhC
Confidence 0000011122359999999999999999999999999997
|
| >d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: DTDP-4-dehydrorhamnose reductase RfbD species: Clostridium acetobutylicum [TaxId: 1488]
Probab=100.00 E-value=1e-34 Score=277.84 Aligned_cols=274 Identities=18% Similarity=0.198 Sum_probs=220.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc--CCC
Q 047227 8 RLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ--GAE 85 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--~~d 85 (485)
|||||||||||||++|+++|.++| ++|++++|.. +|++|.+++.++++ ++|
T Consensus 2 MKIlItGasGfiG~~l~~~L~~~g-~~Vi~~~r~~--------------------------~D~~d~~~~~~~l~~~~~d 54 (281)
T d1vl0a_ 2 MKILITGANGQLGREIQKQLKGKN-VEVIPTDVQD--------------------------LDITNVLAVNKFFNEKKPN 54 (281)
T ss_dssp EEEEEESTTSHHHHHHHHHHTTSS-EEEEEECTTT--------------------------CCTTCHHHHHHHHHHHCCS
T ss_pred CEEEEECCCCHHHHHHHHHHHhCC-CEEEEeechh--------------------------ccCCCHHHHHHHHHHcCCC
Confidence 789999999999999999999999 5898887642 48999999999997 589
Q ss_pred EEEEcCCCCC---CCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCccccccCCCCcCCCCCCCCCCCCCCchHHHH
Q 047227 86 VVFHMAAPNS---SINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDFYSAT 162 (485)
Q Consensus 86 ~Vih~aa~~~---~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy~~~~~~~~~~~e~~~~~~~~~~~Y~~s 162 (485)
+|||+|+... +...+......|+..+.++++.++..+. +++++||..+|+....... +|.. +..+.+.|+.+
T Consensus 55 ~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~-~~~~~ss~~v~~~~~~~~~--~e~~--~~~~~~~~~~~ 129 (281)
T d1vl0a_ 55 VVINCAAHTAVDKCEEQYDLAYKINAIGPKNLAAAAYSVGA-EIVQISTDYVFDGEAKEPI--TEFD--EVNPQSAYGKT 129 (281)
T ss_dssp EEEECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHTC-EEEEEEEGGGSCSCCSSCB--CTTS--CCCCCSHHHHH
T ss_pred EEEeeccccccccccccchhhcccccccccccccccccccc-cccccccceeeeccccccc--cccc--cccchhhhhhh
Confidence 9999999432 3446677889999999999999988765 7888888888865443333 3333 35788899999
Q ss_pred HHHHHHHHHHHhCCCCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCceeecccHHHHHHHHHHHHHHhcc
Q 047227 163 KAEGEALVIKANGTNGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICAERALAS 242 (485)
Q Consensus 163 K~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~D~a~a~~~~~~~~~~ 242 (485)
|..+|++++.+ +.+.+++||+++|||+.+ +...++..+..++.+.+.++ +.++++|++|+++++..+++.
T Consensus 130 k~~~e~~~~~~----~~~~~i~R~~~vyG~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~i~v~D~~~~~~~~~~~--- 199 (281)
T d1vl0a_ 130 KLEGENFVKAL----NPKYYIVRTAWLYGDGNN-FVKTMINLGKTHDELKVVHD--QVGTPTSTVDLARVVLKVIDE--- 199 (281)
T ss_dssp HHHHHHHHHHH----CSSEEEEEECSEESSSSC-HHHHHHHHHHHCSEEEEESS--CEECCEEHHHHHHHHHHHHHH---
T ss_pred hhHHHHHHHHh----CCCccccceeEEeCCCcc-cccchhhhhccCCceeecCC--ceeccchhhhhhhhhhhhhhh---
Confidence 99999999874 567899999999999864 56677888888888877764 889999999999999999874
Q ss_pred ccchhhccCCcEEEeeCCCCccHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCCCCCCCCHHHHHhh
Q 047227 243 EVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELTYRLLGPYGMKVPQLTPSRVRLL 322 (485)
Q Consensus 243 ~~~~~~~~~g~~ynv~~~~~~t~~el~~~i~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 322 (485)
...+.||+++++.+|+.|+++.+++.+|.+.+..++|.. ..+...+ +
T Consensus 200 -------~~~g~~~~~~~~~~s~~e~~~~i~~~~g~~~~i~~i~~~---------------------~~~~~a~---r-- 246 (281)
T d1vl0a_ 200 -------KNYGTFHCTCKGICSWYDFAVEIFRLTGIDVKVTPCTTE---------------------EFPRPAK---R-- 246 (281)
T ss_dssp -------TCCEEEECCCBSCEEHHHHHHHHHHHHCCCCEEEEECST---------------------TSCCSSC---C--
T ss_pred -------cccCceeEeCCCccchHHHHHHHHHHhCCCceEEeccHH---------------------HcCCcCC---C--
Confidence 234589999999999999999999999998776555432 1111000 0
Q ss_pred ccceeeehhhHHhhcCCCCCCChHHHHHHHHHHHH
Q 047227 323 SCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSYS 357 (485)
Q Consensus 323 ~~~~~~d~~ka~~~lG~~p~~~l~e~i~~~~~~~~ 357 (485)
.....+|++|+++.+||+|. +++|++++++++++
T Consensus 247 p~~~~ld~~k~~~~~g~~~~-~~~~~l~~~l~~l~ 280 (281)
T d1vl0a_ 247 PKYSVLRNYMLELTTGDITR-EWKESLKEYIDLLQ 280 (281)
T ss_dssp CSBCCBCCHHHHHTTCCCCC-BHHHHHHHHHHHHT
T ss_pred ccccccCHHHHHHHhCCCCC-CHHHHHHHHHHHhc
Confidence 01234699999999999997 99999999999984
|
| >d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) species: Salmonella enterica serovar typhimurium [TaxId: 90371]
Probab=99.98 E-value=3.5e-32 Score=261.89 Aligned_cols=290 Identities=13% Similarity=0.118 Sum_probs=209.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcC--CC
Q 047227 8 RLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQG--AE 85 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~--~d 85 (485)
|||||||||||||++|++.|.++|+ .|. +++... .+.+|++|.+.+.+++++ +|
T Consensus 1 MKILItG~tGfiG~~l~~~L~~~g~-~v~-~~~~~~----------------------~~~~Dl~~~~~~~~~i~~~~~D 56 (298)
T d1n2sa_ 1 MNILLFGKTGQVGWELQRSLAPVGN-LIA-LDVHSK----------------------EFCGDFSNPKGVAETVRKLRPD 56 (298)
T ss_dssp CEEEEECTTSHHHHHHHHHTTTTSE-EEE-ECTTCS----------------------SSCCCTTCHHHHHHHHHHHCCS
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCC-EEE-EECCCc----------------------cccCcCCCHHHHHHHHHHcCCC
Confidence 7899999999999999999999993 444 443321 124799999999999974 79
Q ss_pred EEEEcCCCC---CCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCccccccCCCCcCCCCCCCCCCCCCCchHHHH
Q 047227 86 VVFHMAAPN---SSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDFYSAT 162 (485)
Q Consensus 86 ~Vih~aa~~---~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy~~~~~~~~~~~e~~~~~~~~~~~Y~~s 162 (485)
+|||+||.. .+..++...++.|+.++.+++++|++.++ +++++||..+|+..... +.+|.. +..|.+.|+.+
T Consensus 57 ~Vih~Aa~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~~~~ss~~~~~~~~~~--~~~E~~--~~~p~~~y~~~ 131 (298)
T d1n2sa_ 57 VIVNAAAHTAVDKAESEPELAQLLNATSVEAIAKAANETGA-WVVHYSTDYVFPGTGDI--PWQETD--ATSPLNVYGKT 131 (298)
T ss_dssp EEEECCCCCCHHHHTTCHHHHHHHHTHHHHHHHHHHTTTTC-EEEEEEEGGGSCCCTTC--CBCTTS--CCCCSSHHHHH
T ss_pred EEEEecccccccccccCccccccccccccccchhhhhcccc-ccccccccccccCCCCC--CCcccc--ccCCCchHhhh
Confidence 999999933 35568888999999999999999999885 78899998888644333 334443 35788999999
Q ss_pred HHHHHHHHHHHhCCCCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCceeecccHHHHHHHHHHHHHHhcc
Q 047227 163 KAEGEALVIKANGTNGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICAERALAS 242 (485)
Q Consensus 163 K~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~D~a~a~~~~~~~~~~ 242 (485)
|..+|..+..+... ..++|++..|+.........+...+..+..+.+.+ +..++++|++|+++++..+++....
T Consensus 132 k~~~e~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~~~~~~~i~~~~~ 205 (298)
T d1n2sa_ 132 KLAGEKALQDNCPK----HLIFRTSWVYAGKGNNFAKTMLRLAKERQTLSVIN--DQYGAPTGAELLADCTAHAIRVALN 205 (298)
T ss_dssp HHHHHHHHHHHCSS----EEEEEECSEECSSSCCHHHHHHHHHHHCSEEEEEC--SCEECCEEHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhHHhhhcc----cccccccceeeccCCccchhhhhhhcccceeeccc--ceeecccccchHHHHHHHHHhhhhc
Confidence 99999999886543 46677777665544445555666677776666554 4788999999999999988774432
Q ss_pred ccchhhccCCcEEEeeCCCCccHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCCCCCCCCHHHHHhh
Q 047227 243 EVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELTYRLLGPYGMKVPQLTPSRVRLL 322 (485)
Q Consensus 243 ~~~~~~~~~g~~ynv~~~~~~t~~el~~~i~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 322 (485)
. ...+++||+++++.++..|+++.+.+..+.......++.. ........+... . .
T Consensus 206 ~-----~~~~~~~n~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~---------------~~i~~~~~~~~a---~--R 260 (298)
T d1n2sa_ 206 K-----PEVAGLYHLVAGGTTTWHDYAALVFDEARKAGITLALTEL---------------NAVPTSAYPTPA---S--R 260 (298)
T ss_dssp C-----GGGCEEEECCCBSCEEHHHHHHHHHHHHHHHTCCCCCCEE---------------EEECSTTSCCSS---C--C
T ss_pred c-----ccccccccccCCCceecHHHHHHHHhhhhccCccccccce---------------eeeehhhcCccC---C--C
Confidence 2 2457899999999999999999987766432222111100 000000111000 0 0
Q ss_pred ccceeeehhhHHhhcCCCCCCChHHHHHHHHHHHHH
Q 047227 323 SCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSYSH 358 (485)
Q Consensus 323 ~~~~~~d~~ka~~~lG~~p~~~l~e~i~~~~~~~~~ 358 (485)
.....+|++|+++.+||+|. +++|+|+++++++..
T Consensus 261 P~~~~ld~~K~~~~~~~~~~-~~~~gl~~~i~~~~~ 295 (298)
T d1n2sa_ 261 PGNSRLNTEKFQRNFDLILP-QWELGVKRMLTEMFT 295 (298)
T ss_dssp CSBCCBCCHHHHHHHTCCCC-BHHHHHHHHHHHHHS
T ss_pred ccccccCHHHHHHHHCCCCC-cHHHHHHHHHHHHHh
Confidence 01235799999999999997 999999999998864
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Probab=99.96 E-value=4.4e-30 Score=248.54 Aligned_cols=249 Identities=13% Similarity=0.074 Sum_probs=191.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCCC
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGAE 85 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~d 85 (485)
+++||||||||||||++++++|+++| ++|++++|......... ......+...+++++.+|+.|.+.+.+++++.+
T Consensus 2 ~k~KILVtGatG~iG~~l~~~L~~~G-~~V~~~~R~~~~~~~~~---~~~~~~~~~~~v~~v~~d~~d~~~~~~~~~~~~ 77 (312)
T d1qyda_ 2 KKSRVLIVGGTGYIGKRIVNASISLG-HPTYVLFRPEVVSNIDK---VQMLLYFKQLGAKLIEASLDDHQRLVDALKQVD 77 (312)
T ss_dssp CCCCEEEESTTSTTHHHHHHHHHHTT-CCEEEECCSCCSSCHHH---HHHHHHHHTTTCEEECCCSSCHHHHHHHHTTCS
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCC-CEEEEEECCCcccchhH---HHHHhhhccCCcEEEEeecccchhhhhhccCcc
Confidence 45789999999999999999999999 58999988654221111 112233446789999999999999999999999
Q ss_pred EEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCccccccCCCCcCCCCCCCCCCCCCCchHHHHHHH
Q 047227 86 VVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDFYSATKAE 165 (485)
Q Consensus 86 ~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy~~~~~~~~~~~e~~~~~~~~~~~Y~~sK~~ 165 (485)
+++|+++.... ..|..++.+++++|++.+..++++.||.+++.+ .+. .+..+...|..+|..
T Consensus 78 ~~~~~~~~~~~--------~~~~~~~~~~l~~a~~~~~~~~v~~Ss~g~~~~--------~~~--~~~~~~~~~~~~~~~ 139 (312)
T d1qyda_ 78 VVISALAGGVL--------SHHILEQLKLVEAIKEAGNIKRFLPSEFGMDPD--------IME--HALQPGSITFIDKRK 139 (312)
T ss_dssp EEEECCCCSSS--------STTTTTHHHHHHHHHHSCCCSEEECSCCSSCTT--------SCC--CCCSSTTHHHHHHHH
T ss_pred hhhhhhhhccc--------ccchhhhhHHHHHHHHhcCCcEEEEeeccccCC--------Ccc--cccchhhhhhHHHHH
Confidence 99999984332 345566778999999998778888888665421 111 134566778888888
Q ss_pred HHHHHHHHhCCCCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCceeecccHHHHHHHHHHHHHHhccccc
Q 047227 166 GEALVIKANGTNGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICAERALASEVT 245 (485)
Q Consensus 166 ~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~D~a~a~~~~~~~~~~~~~ 245 (485)
+++.... .+++++++||+.+||+........+......++.+.++++|++.++|+|++|+|++++.+++.
T Consensus 140 ~~~~~~~----~~~~~~i~r~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~------ 209 (312)
T d1qyda_ 140 VRRAIEA----ASIPYTYVSSNMFAGYFAGSLAQLDGHMMPPRDKVLIYGDGNVKGIWVDEDDVGTYTIKSIDD------ 209 (312)
T ss_dssp HHHHHHH----TTCCBCEEECCEEHHHHTTTSSCTTCCSSCCSSEECCBTTSCSEEEEECHHHHHHHHHHHTTC------
T ss_pred HHHhhcc----cccceEEeccceeecCCccchhhHHHHhhhcccccccccccccccceeeHHHHHHHHHHHhcC------
Confidence 8877665 688999999999999765443333333345667788899999999999999999999998763
Q ss_pred hhhccCCcE-EEeeCCCCccHHHHHHHHHHHcCCCCCCccCCHH
Q 047227 246 VAEKAAGQA-YFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAF 288 (485)
Q Consensus 246 ~~~~~~g~~-ynv~~~~~~t~~el~~~i~~~~g~~~~~~~~p~~ 288 (485)
+...++. |++++++.+|+.|+++.+.+.+|++.+...+|..
T Consensus 210 --~~~~~~~~~~~~~~~~~s~~e~~~~~~~~~g~~~~~~~i~~~ 251 (312)
T d1qyda_ 210 --PQTLNKTMYIRPPMNILSQKEVIQIWERLSEQNLDKIYISSQ 251 (312)
T ss_dssp --GGGSSSEEECCCGGGEEEHHHHHHHHHHHHTCCCEECCBCSH
T ss_pred --ccccCceEEEeCCCcCCCHHHHHHHHHHHHCCCCeEEECCHH
Confidence 3345554 5667778899999999999999999988888864
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=7.7e-27 Score=212.39 Aligned_cols=202 Identities=15% Similarity=0.204 Sum_probs=160.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCCC
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGAE 85 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~d 85 (485)
.++||+||||||++|+++++.|+++| ++|+++.|++.+... ....+++++.+|++|.+++.++++++|
T Consensus 2 ~~kkIlV~GatG~iG~~v~~~Ll~~g-~~V~~~~R~~~~~~~-----------~~~~~~~~~~gD~~d~~~l~~al~~~d 69 (205)
T d1hdoa_ 2 AVKKIAIFGATGQTGLTTLAQAVQAG-YEVTVLVRDSSRLPS-----------EGPRPAHVVVGDVLQAADVDKTVAGQD 69 (205)
T ss_dssp CCCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESCGGGSCS-----------SSCCCSEEEESCTTSHHHHHHHHTTCS
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCc-CEEEEEEcChhhccc-----------ccccccccccccccchhhHHHHhcCCC
Confidence 46899999999999999999999999 599999998653221 123578999999999999999999999
Q ss_pred EEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCccccccCCCCcCCCCCCCCCCCCCCchHHHHHHH
Q 047227 86 VVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDFYSATKAE 165 (485)
Q Consensus 86 ~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy~~~~~~~~~~~e~~~~~~~~~~~Y~~sK~~ 165 (485)
+|||+++...... ..+++..+++++++++++++++|||++||..+|++.. .. ......|...|..
T Consensus 70 ~vi~~~g~~~~~~----~~~~~~~~~~~l~~aa~~~~v~r~i~~ss~~~~~~~~--------~~---~~~~~~~~~~~~~ 134 (205)
T d1hdoa_ 70 AVIVLLGTRNDLS----PTTVMSEGARNIVAAMKAHGVDKVVACTSAFLLWDPT--------KV---PPRLQAVTDDHIR 134 (205)
T ss_dssp EEEECCCCTTCCS----CCCHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSCTT--------CS---CGGGHHHHHHHHH
T ss_pred EEEEEeccCCchh----hhhhhHHHHHHHHHHHHhcCCCeEEEEeeeeccCCCc--------cc---cccccccchHHHH
Confidence 9999998543222 2357788999999999999999999999998875321 11 1234578899999
Q ss_pred HHHHHHHHhCCCCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCceeecccHHHHHHHHHHHHHHhccccc
Q 047227 166 GEALVIKANGTNGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICAERALASEVT 245 (485)
Q Consensus 166 ~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~D~a~a~~~~~~~~~~~~~ 245 (485)
+|+++++ .+++++++||+.+++... .+ ...+..+++....+++++|+|++++.+++
T Consensus 135 ~e~~l~~----~~~~~tiirp~~~~~~~~------------~~-~~~~~~~~~~~~~~i~~~DvA~~~~~~l~------- 190 (205)
T d1hdoa_ 135 MHKVLRE----SGLKYVAVMPPHIGDQPL------------TG-AYTVTLDGRGPSRVISKHDLGHFMLRCLT------- 190 (205)
T ss_dssp HHHHHHH----TCSEEEEECCSEEECCCC------------CS-CCEEESSSCSSCSEEEHHHHHHHHHHTTS-------
T ss_pred HHHHHHh----cCCceEEEecceecCCCC------------cc-cEEEeeCCCCCCCcCCHHHHHHHHHHHhC-------
Confidence 9998876 689999999999986432 12 34456677788899999999999998876
Q ss_pred hhhccCCcEEEeeC
Q 047227 246 VAEKAAGQAYFVTN 259 (485)
Q Consensus 246 ~~~~~~g~~ynv~~ 259 (485)
.+...|+.+.++.
T Consensus 191 -~~~~~g~~~~~s~ 203 (205)
T d1hdoa_ 191 -TDEYDGHSTYPSH 203 (205)
T ss_dssp -CSTTTTCEEEEEC
T ss_pred -CCCCCCEEEecCC
Confidence 3335677777654
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Probab=99.95 E-value=2.8e-28 Score=234.48 Aligned_cols=245 Identities=16% Similarity=0.198 Sum_probs=187.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCCC
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGAE 85 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~d 85 (485)
++|||||||||||||+++++.|+++| ++|++++|........... .....+...+++++.+|+.+.+.+.+.+++.+
T Consensus 2 ~kkKILVtGatG~iG~~l~~~L~~~G-~~V~~l~R~~~~~~~~~~~--~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 78 (307)
T d1qyca_ 2 SRSRILLIGATGYIGRHVAKASLDLG-HPTFLLVRESTASSNSEKA--QLLESFKASGANIVHGSIDDHASLVEAVKNVD 78 (307)
T ss_dssp CCCCEEEESTTSTTHHHHHHHHHHTT-CCEEEECCCCCTTTTHHHH--HHHHHHHTTTCEEECCCTTCHHHHHHHHHTCS
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCC-CeEEEEECCCccccchhHH--HHHHhhccCCcEEEEeecccchhhhhhhhhce
Confidence 35899999999999999999999999 5999999876533222111 12223445789999999999999999999999
Q ss_pred EEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCccccccCCCCcCCCCCCCCCCCCCCchHHHHHHH
Q 047227 86 VVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDFYSATKAE 165 (485)
Q Consensus 86 ~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy~~~~~~~~~~~e~~~~~~~~~~~Y~~sK~~ 165 (485)
.|+|+++ ..+..++.++++++++.+++++++.||...+. ++.. ...+...+...+..
T Consensus 79 ~vi~~~~------------~~~~~~~~~~~~a~~~~~~~~~~~~s~~~~~~---------~~~~--~~~~~~~~~~~~~~ 135 (307)
T d1qyca_ 79 VVISTVG------------SLQIESQVNIIKAIKEVGTVKRFFPSEFGNDV---------DNVH--AVEPAKSVFEVKAK 135 (307)
T ss_dssp EEEECCC------------GGGSGGGHHHHHHHHHHCCCSEEECSCCSSCT---------TSCC--CCTTHHHHHHHHHH
T ss_pred eeeeccc------------ccccchhhHHHHHHHHhccccceeeecccccc---------cccc--cccccccccccccc
Confidence 9999986 23445667899999999988999998854432 1111 12344566777777
Q ss_pred HHHHHHHHhCCCCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCceeecccHHHHHHHHHHHHHHhccccc
Q 047227 166 GEALVIKANGTNGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICAERALASEVT 245 (485)
Q Consensus 166 ~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~D~a~a~~~~~~~~~~~~~ 245 (485)
+|..+.+ .+++++++||+++||++.+.+ ..+.....+++...+++++++.++|+|++|+|++++.+++.
T Consensus 136 ~~~~~~~----~~~~~~i~r~~~v~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~~~~~~l~~------ 204 (307)
T d1qyca_ 136 VRRAIEA----EGIPYTYVSSNCFAGYFLRSL-AQAGLTAPPRDKVVILGDGNARVVFVKEEDIGTFTIKAVDD------ 204 (307)
T ss_dssp HHHHHHH----HTCCBEEEECCEEHHHHTTTT-TCTTCSSCCSSEEEEETTSCCEEEEECHHHHHHHHHTTSSC------
T ss_pred ccchhhc----cCCCceecccceecCCCccch-hhhhhhhhhcccceeeecccccccCCcHHHHHHHHHHHhcC------
Confidence 7777766 578899999999999865432 22333345677788899999999999999999999988762
Q ss_pred hhhccCCc-EEEeeCCCCccHHHHHHHHHHHcCCCCCCccCCHHH
Q 047227 246 VAEKAAGQ-AYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFV 289 (485)
Q Consensus 246 ~~~~~~g~-~ynv~~~~~~t~~el~~~i~~~~g~~~~~~~~p~~~ 289 (485)
+...++ .|++++++.+|+.|+++.+.+++|.+.+.+.+|...
T Consensus 205 --~~~~~~~~~~~~~~~~~s~~ei~~~~~~~~G~~~~~~~~~~~~ 247 (307)
T d1qyca_ 205 --PRTLNKTLYLRLPANTLSLNELVALWEKKIDKTLEKAYVPEEE 247 (307)
T ss_dssp --GGGTTEEEECCCGGGEEEHHHHHHHHHHHTTSCCEEEEECHHH
T ss_pred --hhhcCceeEEeCCCCccCHHHHHHHHHHHHCCCCcEEECCHHH
Confidence 224444 466677899999999999999999998888887753
|
| >d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: TAT-interacting protein TIP30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=1.2e-27 Score=222.04 Aligned_cols=209 Identities=16% Similarity=0.083 Sum_probs=161.4
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCc-eEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcC
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMF-SVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQG 83 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~ 83 (485)
+++|+|||||||||||++++++|+++|.+ .|++++|.+..... .....++...+|+.+.+.+.+++++
T Consensus 12 m~~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~~~~~-----------~~~~~i~~~~~D~~~~~~~~~~~~~ 80 (232)
T d2bkaa1 12 MQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDE-----------EAYKNVNQEVVDFEKLDDYASAFQG 80 (232)
T ss_dssp HTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCS-----------GGGGGCEEEECCGGGGGGGGGGGSS
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChhhhcc-----------cccceeeeeeecccccccccccccc
Confidence 35689999999999999999999999953 79999987542211 1124678888999999999999999
Q ss_pred CCEEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCccccccCCCCcCCCCCCCCCCCCCCchHHHHH
Q 047227 84 AEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDFYSATK 163 (485)
Q Consensus 84 ~d~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy~~~~~~~~~~~e~~~~~~~~~~~Y~~sK 163 (485)
+|+|||+++......++..+.++|+.++.+++++|++.++++|||+||..++. .+.+.|+.+|
T Consensus 81 ~d~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~fi~~Ss~~~~~-----------------~~~~~Y~~~K 143 (232)
T d2bkaa1 81 HDVGFCCLGTTRGKAGAEGFVRVDRDYVLKSAELAKAGGCKHFNLLSSKGADK-----------------SSNFLYLQVK 143 (232)
T ss_dssp CSEEEECCCCCHHHHHHHHHHHHHTHHHHHHHHHHHHTTCCEEEEECCTTCCT-----------------TCSSHHHHHH
T ss_pred cccccccccccccccchhhhhhhcccccceeeecccccCccccccCCcccccc-----------------CccchhHHHH
Confidence 99999999965555567788999999999999999999999999999987752 3457899999
Q ss_pred HHHHHHHHHHhCCCCc-eEEEEecCCcccCCCCCCh-HHHHHHHHcCCCeEEecCCCceeecccHHHHHHHHHHHHHHhc
Q 047227 164 AEGEALVIKANGTNGL-LTCCIRPSSIFGPGDRLLV-PSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICAERALA 241 (485)
Q Consensus 164 ~~~E~~~~~~~~~~g~-~~~ilRp~~v~Gp~~~~~~-~~~~~~~~~g~~~~~~g~g~~~~~~i~v~D~a~a~~~~~~~~~ 241 (485)
..+|+.+.++ ++ .++|+||+.+||+++.... ..+........ ..+......|+++|+|++++.++..
T Consensus 144 ~~~E~~l~~~----~~~~~~IlRP~~i~G~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~I~~~dvA~a~i~~~~~-- 212 (232)
T d2bkaa1 144 GEVEAKVEEL----KFDRYSVFRPGVLLCDRQESRPGEWLVRKFFGSL-----PDSWASGHSVPVVTVVRAMLNNVVR-- 212 (232)
T ss_dssp HHHHHHHHTT----CCSEEEEEECCEEECTTGGGSHHHHHHHHHHCSC-----CTTGGGGTEEEHHHHHHHHHHHHTS--
T ss_pred HHhhhccccc----cccceEEecCceeecCCCcCcHHHHHHHHHhhcc-----CCcccCCCeEEHHHHHHHHHHHHhc--
Confidence 9999998873 44 4899999999999765433 33334333322 1333445679999999999877542
Q ss_pred cccchhhccCCcEEEeeC
Q 047227 242 SEVTVAEKAAGQAYFVTN 259 (485)
Q Consensus 242 ~~~~~~~~~~g~~ynv~~ 259 (485)
...++.+.+.+
T Consensus 213 -------~~~~~~~i~~~ 223 (232)
T d2bkaa1 213 -------PRDKQMELLEN 223 (232)
T ss_dssp -------CCCSSEEEEEH
T ss_pred -------CccCCeEEEcH
Confidence 13355666654
|
| >d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein PA4017 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.92 E-value=4.8e-25 Score=201.42 Aligned_cols=186 Identities=17% Similarity=0.220 Sum_probs=135.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCc-eEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc-CC
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMF-SVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ-GA 84 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-~~ 84 (485)
.|||||||||||||++++++|+++|++ +|.+..|.+... .+. +..+..|..++.+.+. ++
T Consensus 2 ~KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~~r~~~~~---------------~~~---~~~~~~d~~~~~~~~~~~~ 63 (212)
T d2a35a1 2 PKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALAE---------------HPR---LDNPVGPLAELLPQLDGSI 63 (212)
T ss_dssp CCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCCC---------------CTT---EECCBSCHHHHGGGCCSCC
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCCeEEEEEEeCCchhh---------------ccc---ccccccchhhhhhccccch
Confidence 489999999999999999999999964 565555543210 122 3445556555555544 48
Q ss_pred CEEEEcCCCC-CCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCccccccCCCCcCCCCCCCCCCCCCCchHHHHH
Q 047227 85 EVVFHMAAPN-SSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDFYSATK 163 (485)
Q Consensus 85 d~Vih~aa~~-~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy~~~~~~~~~~~e~~~~~~~~~~~Y~~sK 163 (485)
|+|||++|.. ....+...+.+.|+.++.+++++|++.++++|+|+||.+++. .+.+.|+.+|
T Consensus 64 d~vi~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~~i~~Ss~~~~~-----------------~~~~~y~~~K 126 (212)
T d2a35a1 64 DTAFCCLGTTIKEAGSEEAFRAVDFDLPLAVGKRALEMGARHYLVVSALGADA-----------------KSSIFYNRVK 126 (212)
T ss_dssp SEEEECCCCCHHHHSSHHHHHHHHTHHHHHHHHHHHHTTCCEEEEECCTTCCT-----------------TCSSHHHHHH
T ss_pred heeeeeeeeeccccccccccccchhhhhhhccccccccccccccccccccccc-----------------ccccchhHHH
Confidence 9999999833 333456788999999999999999999999999999988762 3457899999
Q ss_pred HHHHHHHHHHhCCCCc-eEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCceeecccHHHHHHHHHHHHH
Q 047227 164 AEGEALVIKANGTNGL-LTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICAER 238 (485)
Q Consensus 164 ~~~E~~~~~~~~~~g~-~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~D~a~a~~~~~~ 238 (485)
..+|+.+++ .++ +++++||+.+||+.+...+..++ ..++..... ..++.||++|+|++++.+++
T Consensus 127 ~~~E~~l~~----~~~~~~~I~Rp~~v~G~~~~~~~~~~~-----~~~~~~~~~--~~~~~i~v~DvA~ai~~~~~ 191 (212)
T d2a35a1 127 GELEQALQE----QGWPQLTIARPSLLFGPREEFRLAEIL-----AAPIARILP--GKYHGIEACDLARALWRLAL 191 (212)
T ss_dssp HHHHHHHTT----SCCSEEEEEECCSEESTTSCEEGGGGT-----TCCCC------CHHHHHHHHHHHHHHHHHHT
T ss_pred HHHhhhccc----cccccceeeCCcceeCCcccccHHHHH-----HHHHhhccC--CCCcEEEHHHHHHHHHHHHc
Confidence 999998876 344 58999999999998764332221 111111111 23567999999999998865
|
| >d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein At5g02240 (T7H20 290) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.92 E-value=3.3e-24 Score=199.09 Aligned_cols=229 Identities=19% Similarity=0.105 Sum_probs=163.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCc-eEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCC
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMF-SVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGA 84 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 84 (485)
++++|||||||||||+++++.|+++|+. .|+.+.|.++.. .....+++++.+|+.|.+.+.++++++
T Consensus 2 ~~~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~~~~------------~~~~~~~~~~~~d~~~~~~~~~~~~~~ 69 (252)
T d2q46a1 2 NLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGK------------EKIGGEADVFIGDITDADSINPAFQGI 69 (252)
T ss_dssp SCCEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCHHHH------------HHTTCCTTEEECCTTSHHHHHHHHTTC
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCHHHH------------HhccCCcEEEEeeeccccccccccccc
Confidence 4689999999999999999999999952 355555554311 112357899999999999999999999
Q ss_pred CEEEEcCCCCC----------------CCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCccccccCCCCcCCCCCC
Q 047227 85 EVVFHMAAPNS----------------SINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVVFDGVHGIINGNEA 148 (485)
Q Consensus 85 d~Vih~aa~~~----------------~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy~~~~~~~~~~~e~ 148 (485)
|+|||+++... ..........+|+.++.++++.+...+.+++.+.|+..++.. .
T Consensus 70 d~vi~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~----------~ 139 (252)
T d2q46a1 70 DALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVAGVKHIVVVGSMGGTNP----------D 139 (252)
T ss_dssp SEEEECCCCCCEECTTCCTTSCCCCCEECCTTCSHHHHTTHHHHHHHHHHHHHTCSEEEEEEETTTTCT----------T
T ss_pred eeeEEEEeeccccccccchhhhhhcccccccchhhhccccccceeeccccccccccccccccccccCCC----------C
Confidence 99999998321 112355677899999999999999999999999998766521 1
Q ss_pred CCCCCCCCchHHHHHHHHHHHHHHHhCCCCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCceeecccHHH
Q 047227 149 LPYPPKHNDFYSATKAEGEALVIKANGTNGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVAN 228 (485)
Q Consensus 149 ~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~D 228 (485)
.+....+...|...+...+.+... .+++++++||+++|||..... .. ..+.... -.....+++|++|
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ilRp~~v~g~~~~~~-~~-----~~~~~~~---~~~~~~~~i~~~D 206 (252)
T d2q46a1 140 HPLNKLGNGNILVWKRKAEQYLAD----SGTPYTIIRAGGLLDKEGGVR-EL-----LVGKDDE---LLQTDTKTVPRAD 206 (252)
T ss_dssp CGGGGGGGCCHHHHHHHHHHHHHH----SSSCEEEEEECEEECSCTTSS-CE-----EEESTTG---GGGSSCCEEEHHH
T ss_pred cccccccccchhhhhhhhhhhhhc----ccccceeecceEEECCCcchh-hh-----hhccCcc---cccCCCCeEEHHH
Confidence 111123445677777666665554 789999999999999975421 00 0000000 1123467999999
Q ss_pred HHHHHHHHHHHhccccchhhccCCcEEEeeCCC---CccHHHHHHHHHHHcC
Q 047227 229 VAHAHICAERALASEVTVAEKAAGQAYFVTNME---SIKFWEFVSLILEGLG 277 (485)
Q Consensus 229 ~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~---~~t~~el~~~i~~~~g 277 (485)
+|++++.+++ .+...|++||++++. ..++.|+.+.+.+..+
T Consensus 207 va~a~~~~l~--------~~~~~g~~~~i~~~~~~~~~~~~~~~~lf~~i~~ 250 (252)
T d2q46a1 207 VAEVCIQALL--------FEEAKNKAFDLGSKPEGTSTPTKDFKALFSQVTS 250 (252)
T ss_dssp HHHHHHHHTT--------CGGGTTEEEEEEECCTTTSCCCCCHHHHHTTCCC
T ss_pred HHHHHHHHhC--------CccccCcEEEEeeCCCCCChhHHHHHHHHHHHHh
Confidence 9999998876 344678999998753 4567777776655443
|
| >d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Negative transcriptional regulator NmrA species: Aspergillus nidulans [TaxId: 162425]
Probab=99.91 E-value=2e-23 Score=205.43 Aligned_cols=240 Identities=15% Similarity=0.042 Sum_probs=174.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCH-HHHHHHhcCC
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHK-AQVLQALQGA 84 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~-~~l~~~~~~~ 84 (485)
+.|+|||||||||||+++++.|+++| ++|+++.|+.++.. .......++++.+.+|+.|. +.+..++.++
T Consensus 2 ~kktIlVtGatG~iG~~lv~~Ll~~G-~~V~~l~R~~~~~~--------~~~~~~~~~v~~~~gD~~d~~~~~~~a~~~~ 72 (350)
T d1xgka_ 2 QKKTIAVVGATGRQGASLIRVAAAVG-HHVRAQVHSLKGLI--------AEELQAIPNVTLFQGPLLNNVPLMDTLFEGA 72 (350)
T ss_dssp CCCCEEEESTTSHHHHHHHHHHHHTT-CCEEEEESCSCSHH--------HHHHHTSTTEEEEESCCTTCHHHHHHHHTTC
T ss_pred CCCEEEEECCChHHHHHHHHHHHhCC-CeEEEEECCcchhh--------hhhhcccCCCEEEEeeCCCcHHHHHHHhcCC
Confidence 45899999999999999999999999 59999998754221 11222346899999999985 4577788999
Q ss_pred CEEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCccccccCCCCcCCCCCCCCCCCCCCchHHHHHH
Q 047227 85 EVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDFYSATKA 164 (485)
Q Consensus 85 d~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy~~~~~~~~~~~e~~~~~~~~~~~Y~~sK~ 164 (485)
|++++..... ...++..+.+++++|++.|++++++.||....... +..+..+|..+|.
T Consensus 73 ~~~~~~~~~~---------~~~~~~~~~~~~~aa~~agv~~~v~~Ss~~~~~~~-------------~~~~~~~~~~~k~ 130 (350)
T d1xgka_ 73 HLAFINTTSQ---------AGDEIAIGKDLADAAKRAGTIQHYIYSSMPDHSLY-------------GPWPAVPMWAPKF 130 (350)
T ss_dssp SEEEECCCST---------TSCHHHHHHHHHHHHHHHSCCSEEEEEECCCGGGT-------------SSCCCCTTTHHHH
T ss_pred ceEEeecccc---------cchhhhhhhHHHHHHHHhCCCceEEEeeccccccC-------------CcccchhhhhhHH
Confidence 9998876422 23467788999999999998888888886543210 1234456778899
Q ss_pred HHHHHHHHHhCCCCceEEEEecCCcccCCCCCChHHHH-HHHHcCC-CeEEecCCCceeecccH-HHHHHHHHHHHHHhc
Q 047227 165 EGEALVIKANGTNGLLTCCIRPSSIFGPGDRLLVPSLV-AAARAGK-SKFIIGDGNNVYDFTYV-ANVAHAHICAERALA 241 (485)
Q Consensus 165 ~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~~~~~~~~-~~~~~g~-~~~~~g~g~~~~~~i~v-~D~a~a~~~~~~~~~ 241 (485)
..|.++.+ .+++++++||+.++++......+.+. .....+. ....+.+++...+++++ +|+++++..++....
T Consensus 131 ~~~~~~~~----~~~~~~~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~Dva~~v~~~l~~~~ 206 (350)
T d1xgka_ 131 TVENYVRQ----LGLPSTFVYAGIYNNNFTSLPYPLFQMELMPDGTFEWHAPFDPDIPLPWLDAEHDVGPALLQIFKDGP 206 (350)
T ss_dssp HHHHHHHT----SSSCEEEEEECEEGGGCBSSSCSSCBEEECTTSCEEEEESSCTTSCEEEECHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHh----hccCceeeeeceeeccccccccccccccccccccceeeecccCCCcceEEEeHHHHHHHHHHHHhCCh
Confidence 88888776 56889999999988753221111110 0112222 23345677888899986 799999998876322
Q ss_pred cccchhhccCCcEEEeeCCCCccHHHHHHHHHHHcCCCCCCccCCH
Q 047227 242 SEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPA 287 (485)
Q Consensus 242 ~~~~~~~~~~g~~ynv~~~~~~t~~el~~~i~~~~g~~~~~~~~p~ 287 (485)
+...|+.|++++ +.+|+.|+++.+.+++|++.+.+.+|.
T Consensus 207 ------~~~~G~~~~~~g-~~~T~~eia~~l~~~~G~~v~~~~vp~ 245 (350)
T d1xgka_ 207 ------QKWNGHRIALTF-ETLSPVQVCAAFSRALNRRVTYVQVPK 245 (350)
T ss_dssp ------HHHTTCEEEECS-EEECHHHHHHHHHHHHTSCEEEEECSS
T ss_pred ------hhcCCeEEEEeC-CcCCHHHHHHHHHHHHCCcceEEECCH
Confidence 226789999987 579999999999999999887766654
|
| >d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.77 E-value=6e-18 Score=156.03 Aligned_cols=211 Identities=18% Similarity=0.088 Sum_probs=153.1
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc
Q 047227 3 GEENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ 82 (485)
Q Consensus 3 ~~~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~ 82 (485)
++.++|++|||||++-||+++++.|.++| ++|.+.+|.... ..++..+.+|++|++++.++++
T Consensus 3 psl~gK~~lITGas~GIG~aia~~la~~G-a~V~~~~r~~~~----------------~~~~~~~~~Dv~~~~~v~~~~~ 65 (237)
T d1uzma1 3 PPFVSRSVLVTGGNRGIGLAIAQRLAADG-HKVAVTHRGSGA----------------PKGLFGVEVDVTDSDAVDRAFT 65 (237)
T ss_dssp CCCCCCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESSSCC----------------CTTSEEEECCTTCHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCcch----------------hcCceEEEEecCCHHHHHHHHH
Confidence 35688999999999999999999999999 699999987541 2356789999999998877764
Q ss_pred -------CCCEEEEcCCC-------CCCCCchhhhHHHHHHHHHHHHHH----HHhcCCCEEEEecCccccccCCCCcCC
Q 047227 83 -------GAEVVFHMAAP-------NSSINNHKLHHSVNVEGTKNVIDA----CAELKVKRLIYTSSPSVVFDGVHGIIN 144 (485)
Q Consensus 83 -------~~d~Vih~aa~-------~~~~~~~~~~~~~nv~~t~~ll~a----~~~~~v~r~V~~SS~~vy~~~~~~~~~ 144 (485)
+.|++||+||. ..+.++++..+++|+.++..+.++ +++.+-.++|++||.....
T Consensus 66 ~~~~~~g~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~g~Iv~isS~~~~~-------- 137 (237)
T d1uzma1 66 AVEEHQGPVEVLVSNAGLSADAFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQRNKFGRMIFIGSVSGLW-------- 137 (237)
T ss_dssp HHHHHHSSCSEEEEECSCCC-----CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCCC----------
T ss_pred HHHHhcCCceEEEeeecccccccHhhCCHHHHHHHHHhhhhhhhhhhhhhhhcccccCCCceEEEcchhhcc--------
Confidence 48999999992 224457788999999998777654 4455667999999976642
Q ss_pred CCCCCCCCCCCCchHHHHHHHHHHHHHHHhC---CCCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCcee
Q 047227 145 GNEALPYPPKHNDFYSATKAEGEALVIKANG---TNGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVY 221 (485)
Q Consensus 145 ~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~---~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~~ 221 (485)
+......|+.+|+..+.+.+.++. .+|+++.++.||.+..+.....-........+..+ ..
T Consensus 138 -------~~~~~~~Y~asKaal~~lt~~lA~e~~~~gIrVN~I~PG~v~T~~~~~~~~~~~~~~~~~~p---------l~ 201 (237)
T d1uzma1 138 -------GIGNQANYAASKAGVIGMARSIARELSKANVTANVVAPGYIDTDMTRALDERIQQGALQFIP---------AK 201 (237)
T ss_dssp ----------CCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHHSCHHHHHHHGGGCT---------TC
T ss_pred -------CCcccHHHHHHHHHHHHHHHHHHhhhhcCCceeeeeeeCcCCChhhhccCHHHHHHHHhcCC---------CC
Confidence 123456899999999998887664 36899999999998654211111222233322221 22
Q ss_pred ecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCC
Q 047227 222 DFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNM 260 (485)
Q Consensus 222 ~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~ 260 (485)
-+...+|+|.++..++... ..-..|+.+.+.+|
T Consensus 202 R~~~pedvA~~v~fL~S~~------s~~itG~~i~vdGG 234 (237)
T d1uzma1 202 RVGTPAEVAGVVSFLASED------ASYISGAVIPVDGG 234 (237)
T ss_dssp SCBCHHHHHHHHHHHHSGG------GTTCCSCEEEESTT
T ss_pred CCcCHHHHHHHHHHHhCch------hcCCcCCeEEECCC
Confidence 3567999999998875421 22267899988765
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Probab=99.76 E-value=3.3e-17 Score=151.55 Aligned_cols=216 Identities=19% Similarity=0.142 Sum_probs=158.8
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc--
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ-- 82 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 82 (485)
.++|++|||||++-||.++++.|.++| ++|.+.+|.... ++...+.-+++.+.+|++|++++.++++
T Consensus 3 L~gK~~lITGas~GIG~aia~~l~~~G-~~V~~~~r~~~~----------l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~ 71 (242)
T d1ulsa_ 3 LKDKAVLITGAAHGIGRATLELFAKEG-ARLVACDIEEGP----------LREAAEAVGAHPVVMDVADPASVERGFAEA 71 (242)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESCHHH----------HHHHHHTTTCEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHH----------HHHHHHHcCCeEEEEecCCHHHHHHHHHHH
Confidence 467999999999999999999999999 699999986431 2223334578899999999998887764
Q ss_pred -----CCCEEEEcCCCC-------CCCCchhhhHHHHHHHHHHHHHHHHh----cCCCEEEEecCccccccCCCCcCCCC
Q 047227 83 -----GAEVVFHMAAPN-------SSINNHKLHHSVNVEGTKNVIDACAE----LKVKRLIYTSSPSVVFDGVHGIINGN 146 (485)
Q Consensus 83 -----~~d~Vih~aa~~-------~~~~~~~~~~~~nv~~t~~ll~a~~~----~~v~r~V~~SS~~vy~~~~~~~~~~~ 146 (485)
+.|++||+||.. .+.++++..+++|+.++..+.+++.. .+-.+++.+||....+
T Consensus 72 ~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~~~i~~~ss~~~~~---------- 141 (242)
T d1ulsa_ 72 LAHLGRLDGVVHYAGITRDNFHWKMPLEDWELVLRVNLTGSFLVAKAASEAMREKNPGSIVLTASRVYLG---------- 141 (242)
T ss_dssp HHHHSSCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCEEEEEECCGGGGC----------
T ss_pred HHhcCCceEEEECCcccccCchhhCcchhhhccccccchhhhhhhhhccccccccccceeeeeccccccC----------
Confidence 489999999932 23346788999999999988877654 3445677777754321
Q ss_pred CCCCCCCCCCchHHHHHHHHHHHHHHHhC---CCCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCceeec
Q 047227 147 EALPYPPKHNDFYSATKAEGEALVIKANG---TNGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDF 223 (485)
Q Consensus 147 e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~---~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~ 223 (485)
......|+.+|...+.+.+.++. .+|+++.++.||.+-.+..............+..+. .-+
T Consensus 142 ------~~~~~~Y~asKaal~~ltk~lA~ela~~gIrVN~I~PG~v~T~~~~~~~~~~~~~~~~~~pl---------~R~ 206 (242)
T d1ulsa_ 142 ------NLGQANYAASMAGVVGLTRTLALELGRWGIRVNTLAPGFIETRMTAKVPEKVREKAIAATPL---------GRA 206 (242)
T ss_dssp ------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTTSSSCHHHHHHHHHTCTT---------CSC
T ss_pred ------CCCCcchHHHHHHHHHHHHHHHHHHhhhCcEEEEEeeCcccChhhhcCCHHHHHHHHhcCCC---------CCC
Confidence 23457899999999999887654 368999999999998765444444445444444332 235
Q ss_pred ccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCCC
Q 047227 224 TYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMES 262 (485)
Q Consensus 224 i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~ 262 (485)
...+|+|.++..++... ..-..|+.+.+.+|..
T Consensus 207 ~~pedia~~v~fL~S~~------s~~itG~~i~vDGG~t 239 (242)
T d1ulsa_ 207 GKPLEVAYAALFLLSDE------SSFITGQVLFVDGGRT 239 (242)
T ss_dssp BCHHHHHHHHHHHHSGG------GTTCCSCEEEESTTTT
T ss_pred CCHHHHHHHHHHHhchh------hCCCCCcEEEECCCcc
Confidence 56899999998875421 2226789998887653
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=99.75 E-value=1.9e-17 Score=154.17 Aligned_cols=218 Identities=11% Similarity=0.076 Sum_probs=157.7
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhc--CCCeEEEEecCCCHHHHHHHhc
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALR--SGRAHYVSFDLRHKAQVLQALQ 82 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~Dl~d~~~l~~~~~ 82 (485)
.++|.+|||||++-||+++++.|.++| ++|.+.+|+...... ....+. ..++..+.+|++|++++.++++
T Consensus 8 lenKvalITGas~GIG~a~a~~la~~G-a~V~~~~r~~~~l~~-------~~~~l~~~g~~~~~~~~Dvt~~~~v~~~~~ 79 (251)
T d2c07a1 8 GENKVALVTGAGRGIGREIAKMLAKSV-SHVICISRTQKSCDS-------VVDEIKSFGYESSGYAGDVSKKEEISEVIN 79 (251)
T ss_dssp CSSCEEEEESTTSHHHHHHHHHHTTTS-SEEEEEESSHHHHHH-------HHHHHHTTTCCEEEEECCTTCHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcC-CEEEEEECCHHHHHH-------HHHHHHhcCCcEEEEEccCCCHHHHHHHHH
Confidence 468999999999999999999999999 699999986442111 111121 3478999999999998887764
Q ss_pred -------CCCEEEEcCCCC-------CCCCchhhhHHHHHHHHHHHHHHH----HhcCCCEEEEecCccccccCCCCcCC
Q 047227 83 -------GAEVVFHMAAPN-------SSINNHKLHHSVNVEGTKNVIDAC----AELKVKRLIYTSSPSVVFDGVHGIIN 144 (485)
Q Consensus 83 -------~~d~Vih~aa~~-------~~~~~~~~~~~~nv~~t~~ll~a~----~~~~v~r~V~~SS~~vy~~~~~~~~~ 144 (485)
+.|++||+|+.. ...++++..+++|+.++..+.+++ ++.+-.++|++||.....
T Consensus 80 ~~~~~~g~iDilvnnag~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~IVnisS~~~~~-------- 151 (251)
T d2c07a1 80 KILTEHKNVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINNRYGRIINISSIVGLT-------- 151 (251)
T ss_dssp HHHHHCSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTCEEEEEECCTHHHH--------
T ss_pred HHHHhcCCceeeeeccccccccccccccHHHHhhhheeeehhhhhhhhhcCcccccCCCeEEEEECCHHhcC--------
Confidence 489999999921 233477889999999988887764 444567999999976652
Q ss_pred CCCCCCCCCCCCchHHHHHHHHHHHHHHHhC---CCCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCcee
Q 047227 145 GNEALPYPPKHNDFYSATKAEGEALVIKANG---TNGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVY 221 (485)
Q Consensus 145 ~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~---~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~~ 221 (485)
+......|+.+|+..+.+.+.++. .+|+++.++.||.+-.+......+.......+..+. .
T Consensus 152 -------~~~~~~~Y~asKaal~~ltr~lA~el~~~gIrVN~V~PG~v~T~~~~~~~~~~~~~~~~~~pl---------~ 215 (251)
T d2c07a1 152 -------GNVGQANYSSSKAGVIGFTKSLAKELASRNITVNAIAPGFISSDMTDKISEQIKKNIISNIPA---------G 215 (251)
T ss_dssp -------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCC-----CCHHHHHHHHTTCTT---------S
T ss_pred -------CCCCCHHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEccCCEecccccccCHHHHHHHHhcCCC---------C
Confidence 123456899999999999888764 468999999999998765444445555555444321 2
Q ss_pred ecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCC
Q 047227 222 DFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNM 260 (485)
Q Consensus 222 ~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~ 260 (485)
-+...+|+|++++.++... ..-..|+.+.+.+|
T Consensus 216 R~~~pedvA~~v~fL~S~~------s~~itG~~i~vDGG 248 (251)
T d2c07a1 216 RMGTPEEVANLACFLSSDK------SGYINGRVFVIDGG 248 (251)
T ss_dssp SCBCHHHHHHHHHHHHSGG------GTTCCSCEEEESTT
T ss_pred CCcCHHHHHHHHHHHhCch------hCCCcCcEEEECCC
Confidence 3667899999998875421 22267888888765
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=99.74 E-value=6.3e-18 Score=156.56 Aligned_cols=218 Identities=16% Similarity=0.091 Sum_probs=157.8
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc--
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ-- 82 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 82 (485)
.++|++|||||++-||+++++.|.++| ++|.+.+|....... +.+.+ ..+...+.+|++|++++.++++
T Consensus 2 l~gK~alITGas~GIG~a~a~~l~~~G-~~Vv~~~r~~~~l~~-------~~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~ 72 (243)
T d1q7ba_ 2 FEGKIALVTGASRGIGRAIAETLAARG-AKVIGTATSENGAQA-------ISDYL-GANGKGLMLNVTDPASIESVLEKI 72 (243)
T ss_dssp CTTCEEEESSCSSHHHHHHHHHHHHTT-CEEEEEESSHHHHHH-------HHHHH-GGGEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcC-CEEEEEeCCHHHHHH-------HHHHh-CCCCcEEEEEecCHHHhhhhhhhh
Confidence 367999999999999999999999999 699999886532111 12222 3467889999999998877764
Q ss_pred -----CCCEEEEcCCCC-------CCCCchhhhHHHHHHHHHHHHHHHH----hcCCCEEEEecCccccccCCCCcCCCC
Q 047227 83 -----GAEVVFHMAAPN-------SSINNHKLHHSVNVEGTKNVIDACA----ELKVKRLIYTSSPSVVFDGVHGIINGN 146 (485)
Q Consensus 83 -----~~d~Vih~aa~~-------~~~~~~~~~~~~nv~~t~~ll~a~~----~~~v~r~V~~SS~~vy~~~~~~~~~~~ 146 (485)
+.|++||+|+.. ...++++..+++|+.++..+.+++. +.+-.++|++||.....
T Consensus 73 ~~~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~II~isS~~~~~---------- 142 (243)
T d1q7ba_ 73 RAEFGEVDILVNNAGITRDNLLMRMKDEEWNDIIETNLSSVFRLSKAVMRAMMKKRHGRIITIGSVVGTM---------- 142 (243)
T ss_dssp HHHTCSCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHH----------
T ss_pred hcccCCcceehhhhhhccccccccccccccccccceeechhhhhHHHHHHHHHHcCCCEeeeecchhhcC----------
Confidence 489999999922 2334677889999999988887764 44556899999977652
Q ss_pred CCCCCCCCCCchHHHHHHHHHHHHHHHhC---CCCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCceeec
Q 047227 147 EALPYPPKHNDFYSATKAEGEALVIKANG---TNGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDF 223 (485)
Q Consensus 147 e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~---~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~ 223 (485)
+......|+.+|...+.+.+.++. .+|+++.++.||.+-.+......+.......+..+ ..-+
T Consensus 143 -----~~~~~~~Y~asKaal~~lt~~lA~ela~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~p---------l~R~ 208 (243)
T d1q7ba_ 143 -----GNGGQANYAAAKAGLIGFSKSLAREVASRGITVNVVAPGFIETDMTRALSDDQRAGILAQVP---------AGRL 208 (243)
T ss_dssp -----CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHTSCHHHHHHHHTTCT---------TSSC
T ss_pred -----CCCCCHHHHHHHHHHHHHHHHHHHHhCccCeEEEEEecceEechhhhhhhhhHHHHHHhcCC---------CCCC
Confidence 123456899999999999887764 36899999999998654322223333333333322 2235
Q ss_pred ccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCC
Q 047227 224 TYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNME 261 (485)
Q Consensus 224 i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~ 261 (485)
...+|+|+++..++... ..-..|+.+.+.+|-
T Consensus 209 ~~pedvA~~v~fL~S~~------s~~itGq~i~vdGG~ 240 (243)
T d1q7ba_ 209 GGAQEIANAVAFLASDE------AAYITGETLHVNGGM 240 (243)
T ss_dssp BCHHHHHHHHHHHHSGG------GTTCCSCEEEESTTS
T ss_pred CCHHHHHHHHHHHhCch------hcCCcCCeEEECCCe
Confidence 67999999998886421 222678999887763
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.74 E-value=3.6e-17 Score=151.50 Aligned_cols=220 Identities=15% Similarity=0.065 Sum_probs=159.1
Q ss_pred CCCCCCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHH
Q 047227 1 MSGEENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQA 80 (485)
Q Consensus 1 M~~~~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~ 80 (485)
|+-..++|++|||||++-||+++++.|.++| ++|.+.+|+..... ....+.+++..+.+|++|+++++++
T Consensus 1 M~~~L~GK~~lITGas~GIG~aia~~la~~G-~~V~~~~r~~~~l~---------~~~~~~~~~~~~~~Dv~d~~~v~~~ 70 (244)
T d1pr9a_ 1 MELFLAGRRVLVTGAGKGIGRGTVQALHATG-ARVVAVSRTQADLD---------SLVRECPGIEPVCVDLGDWEATERA 70 (244)
T ss_dssp CCCCCTTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHH---------HHHHHSTTCEEEECCTTCHHHHHHH
T ss_pred CCCCCCCCEEEEeCCCCHHHHHHHHHHHHcC-CEEEEEECCHHHHH---------HHHHhcCCCeEEEEeCCCHHHHHHH
Confidence 6666789999999999999999999999999 69999998753211 1111235788999999999999998
Q ss_pred hcC---CCEEEEcCCCC-------CCCCchhhhHHHHHHHHHHHHHHHHh-----cCCCEEEEecCccccccCCCCcCCC
Q 047227 81 LQG---AEVVFHMAAPN-------SSINNHKLHHSVNVEGTKNVIDACAE-----LKVKRLIYTSSPSVVFDGVHGIING 145 (485)
Q Consensus 81 ~~~---~d~Vih~aa~~-------~~~~~~~~~~~~nv~~t~~ll~a~~~-----~~v~r~V~~SS~~vy~~~~~~~~~~ 145 (485)
++. .|++||+|+.. .+.++++..+++|+.++..+.+++.. .+-.++|++||.....
T Consensus 71 ~~~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~g~Ii~isS~~~~~--------- 141 (244)
T d1pr9a_ 71 LGSVGPVDLLVNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVPGAIVNVSSQCSQR--------- 141 (244)
T ss_dssp HTTCCCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTS---------
T ss_pred HHHhCCceEEEeccccccccchhhhhHHHHHHHHHHhhhhhhHHHHHhhhHHHHhCCcceEeecccccccc---------
Confidence 863 89999999932 23456778999999998888776543 2356899999976542
Q ss_pred CCCCCCCCCCCchHHHHHHHHHHHHHHHhC---CCCceEEEEecCCcccCCCCCC--hHHHHHHHHcCCCeEEecCCCce
Q 047227 146 NEALPYPPKHNDFYSATKAEGEALVIKANG---TNGLLTCCIRPSSIFGPGDRLL--VPSLVAAARAGKSKFIIGDGNNV 220 (485)
Q Consensus 146 ~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~---~~g~~~~ilRp~~v~Gp~~~~~--~~~~~~~~~~g~~~~~~g~g~~~ 220 (485)
+......|+.+|...+.+.+.++. .+|+++.++.||.+..+..... -+.......+..+ .
T Consensus 142 ------~~~~~~~Y~asKaal~~lt~~lA~el~~~gIrvN~I~PG~v~T~~~~~~~~~~~~~~~~~~~~p---------l 206 (244)
T d1pr9a_ 142 ------AVTNHSVYCSTKGALDMLTKVMALELGPHKIRVNAVNPTVVMTSMGQATWSDPHKAKTMLNRIP---------L 206 (244)
T ss_dssp ------CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSHHHHTTSCSHHHHHHHHTTCT---------T
T ss_pred ------cccchhhhhhhHHHHHHHHHHHHHHhCCCcEEEEEEeeCcCcChHHhhhccChHHHHHHHhcCC---------C
Confidence 123456899999999999887764 3689999999999875421110 1222333333322 1
Q ss_pred eecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCC
Q 047227 221 YDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNM 260 (485)
Q Consensus 221 ~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~ 260 (485)
..+...+|+|+++..++... ..-..|+.+.+.+|
T Consensus 207 ~R~~~peevA~~v~fL~S~~------a~~itG~~i~vDGG 240 (244)
T d1pr9a_ 207 GKFAEVEHVVNAILFLLSDR------SGMTTGSTLPVEGG 240 (244)
T ss_dssp CSCBCHHHHHHHHHHHHSGG------GTTCCSCEEEESTT
T ss_pred CCCcCHHHHHHHHHHHhCch------hCCcCCcEEEECcc
Confidence 23667999999998875421 22267888888765
|
| >d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein TTHA0369 species: Thermus thermophilus [TaxId: 274]
Probab=99.73 E-value=5.1e-17 Score=150.75 Aligned_cols=216 Identities=15% Similarity=0.091 Sum_probs=152.9
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc--
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ-- 82 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 82 (485)
.++|++|||||++-||.++++.|.++| ++|.+.+|.... .+..+..+..++.+|++|++++.++++
T Consensus 3 l~GK~alITGas~GIG~aia~~la~~G-~~V~~~~~~~~~-----------~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~ 70 (248)
T d2d1ya1 3 FAGKGVLVTGGARGIGRAIAQAFAREG-ALVALCDLRPEG-----------KEVAEAIGGAFFQVDLEDERERVRFVEEA 70 (248)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSTTH-----------HHHHHHHTCEEEECCTTCHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHH-----------HHHHHHcCCeEEEEeCCCHHHHHHHHHHH
Confidence 468999999999999999999999999 699999986431 111122356789999999988877764
Q ss_pred -----CCCEEEEcCCCC-------CCCCchhhhHHHHHHHHHHHHHHHHh----cCCCEEEEecCccccccCCCCcCCCC
Q 047227 83 -----GAEVVFHMAAPN-------SSINNHKLHHSVNVEGTKNVIDACAE----LKVKRLIYTSSPSVVFDGVHGIINGN 146 (485)
Q Consensus 83 -----~~d~Vih~aa~~-------~~~~~~~~~~~~nv~~t~~ll~a~~~----~~v~r~V~~SS~~vy~~~~~~~~~~~ 146 (485)
+.|++||+||.. .+.++++..+++|+.++.++.+++.. .+-.++|++||...+.
T Consensus 71 ~~~~G~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~Ii~isS~~~~~---------- 140 (248)
T d2d1ya1 71 AYALGRVDVLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVGGGAIVNVASVQGLF---------- 140 (248)
T ss_dssp HHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEECCGGGTS----------
T ss_pred HHhcCCCCeEEEeCcCCCCCChhhCCHHHHHHHHHhhhhhHhhhhhhhcccccccccccccccccccccc----------
Confidence 489999999921 23346778999999999988777653 4556999999977652
Q ss_pred CCCCCCCCCCchHHHHHHHHHHHHHHHhC---CCCceEEEEecCCcccCCCCC------ChHHHHHHHHcCCCeEEecCC
Q 047227 147 EALPYPPKHNDFYSATKAEGEALVIKANG---TNGLLTCCIRPSSIFGPGDRL------LVPSLVAAARAGKSKFIIGDG 217 (485)
Q Consensus 147 e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~---~~g~~~~ilRp~~v~Gp~~~~------~~~~~~~~~~~g~~~~~~g~g 217 (485)
+......|+.+|+..+.+.+.++. .+|+++.++.||.+-.|.... ......+...+.
T Consensus 141 -----~~~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~--------- 206 (248)
T d2d1ya1 141 -----AEQENAAYNASKGGLVNLTRSLALDLAPLRIRVNAVAPGAIATEAVLEAIALSPDPERTRRDWEDL--------- 206 (248)
T ss_dssp -----BCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHHHHC--------CHHHHTT---------
T ss_pred -----cccccchhHHHHHHHHHHHHHHHHHhhhhCcEEEEEeeCCCCCchHHHHhhcCCCHHHHHHHHHhc---------
Confidence 124567899999999998877654 368999999999985431000 000011111111
Q ss_pred CceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCCC
Q 047227 218 NNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMES 262 (485)
Q Consensus 218 ~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~ 262 (485)
....-+...+|+|.++..++... ..-..|+.+.+.+|-.
T Consensus 207 ~pl~R~~~pedia~~v~fL~S~~------s~~itG~~i~vDGG~t 245 (248)
T d2d1ya1 207 HALRRLGKPEEVAEAVLFLASEK------ASFITGAILPVDGGMT 245 (248)
T ss_dssp STTSSCBCHHHHHHHHHHHHSGG------GTTCCSCEEEESTTGG
T ss_pred CCCCCCcCHHHHHHHHHHHhCch------hcCCCCcEEEcCcCcc
Confidence 12234667999999998875421 2236789999977643
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.73 E-value=3.5e-17 Score=151.28 Aligned_cols=215 Identities=19% Similarity=0.164 Sum_probs=155.5
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc
Q 047227 3 GEENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ 82 (485)
Q Consensus 3 ~~~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~ 82 (485)
...++|++|||||++-||+++++.|.++| ++|.+.+|....... +...+ ..++.++.+|++|++++.++++
T Consensus 2 G~L~gK~alITGas~GIG~aia~~la~~G-~~V~~~~r~~~~~~~-------~~~~~-~~~~~~~~~Dv~~~~~v~~~~~ 72 (244)
T d1nffa_ 2 GRLTGKVALVSGGARGMGASHVRAMVAEG-AKVVFGDILDEEGKA-------MAAEL-ADAARYVHLDVTQPAQWKAAVD 72 (244)
T ss_dssp CTTTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHH-------HHHHT-GGGEEEEECCTTCHHHHHHHHH
T ss_pred cccCCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHH-------HHHHh-hCcceEEEeecCCHHHHHHHHH
Confidence 34678999999999999999999999999 699999987532111 11112 3468889999999998877764
Q ss_pred -------CCCEEEEcCCCC-------CCCCchhhhHHHHHHHHHHHHHHHH----hcCCCEEEEecCccccccCCCCcCC
Q 047227 83 -------GAEVVFHMAAPN-------SSINNHKLHHSVNVEGTKNVIDACA----ELKVKRLIYTSSPSVVFDGVHGIIN 144 (485)
Q Consensus 83 -------~~d~Vih~aa~~-------~~~~~~~~~~~~nv~~t~~ll~a~~----~~~v~r~V~~SS~~vy~~~~~~~~~ 144 (485)
+.|++||+||.. .+.++++..+++|+.++..+.+++. +.+-.++|++||...+.
T Consensus 73 ~~~~~~g~idilinnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~isS~~~~~-------- 144 (244)
T d1nffa_ 73 TAVTAFGGLHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEAGRGSIINISSIEGLA-------- 144 (244)
T ss_dssp HHHHHHSCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS--------
T ss_pred HHHHHhCCCeEEEECCcccCCCchhhCCHHHHhHHhhcccchhhHHHHHHHhHHHhcCcceEEecccccccc--------
Confidence 489999999932 2345678899999999988877653 34456899999976642
Q ss_pred CCCCCCCCCCCCchHHHHHHHHHHHHHHHhC---CCCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCcee
Q 047227 145 GNEALPYPPKHNDFYSATKAEGEALVIKANG---TNGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVY 221 (485)
Q Consensus 145 ~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~---~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~~ 221 (485)
+......|+.+|+..+.+.+.++. .+|+++.++.||.+-.|..... .+.. ......
T Consensus 145 -------~~~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~~~~~~--------~~~~------~~~pl~ 203 (244)
T d1nffa_ 145 -------GTVACHGYTATKFAVRGLTKSTALELGPSGIRVNSIHPGLVKTPMTDWV--------PEDI------FQTALG 203 (244)
T ss_dssp -------CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSGGGTTS--------CTTC------SCCSSS
T ss_pred -------ccccccchhhHHHHHHHHHHHHHHHhcccCEEEEEEeeCCccChhHhhh--------hHHH------Hhcccc
Confidence 123457899999999999887764 3689999999999875532111 0000 011223
Q ss_pred ecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCC
Q 047227 222 DFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNME 261 (485)
Q Consensus 222 ~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~ 261 (485)
.+..++|+|+++..++... ..-..|+.+.|.+|.
T Consensus 204 R~~~p~diA~~v~fL~s~~------s~~itG~~i~vDGG~ 237 (244)
T d1nffa_ 204 RAAEPVEVSNLVVYLASDE------SSYSTGAEFVVDGGT 237 (244)
T ss_dssp SCBCHHHHHHHHHHHHSGG------GTTCCSCEEEESTTG
T ss_pred CCCCHHHHHHHHHHHhChh------hCCCcCCEEEECCCe
Confidence 4778999999998876421 223678999887763
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Probab=99.72 E-value=4.1e-17 Score=152.81 Aligned_cols=230 Identities=13% Similarity=0.131 Sum_probs=151.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc---
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ--- 82 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 82 (485)
++|++|||||++-||+++++.|.++| ++|.+.+|......+...+ .+. .....++.++.+|++|++++.++++
T Consensus 3 ~gK~alITGas~GIG~aiA~~la~~G-a~V~~~~r~~~~~~~~~~~--~~~-~~~g~~~~~~~~Dv~~~~~v~~~~~~~~ 78 (260)
T d1x1ta1 3 KGKVAVVTGSTSGIGLGIATALAAQG-ADIVLNGFGDAAEIEKVRA--GLA-AQHGVKVLYDGADLSKGEAVRGLVDNAV 78 (260)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTT-CEEEEECCSCHHHHHHHHH--HHH-HHHTSCEEEECCCTTSHHHHHHHHHHHH
T ss_pred CcCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEeCCcHHHHHHHHH--HHH-HhcCCcEEEEECCCCCHHHHHHHHHHHH
Confidence 57899999999999999999999999 6999998864321110000 000 1124578899999999998888774
Q ss_pred ----CCCEEEEcCCCC-------CCCCchhhhHHHHHHHHHHHHHHH----HhcCCCEEEEecCccccccCCCCcCCCCC
Q 047227 83 ----GAEVVFHMAAPN-------SSINNHKLHHSVNVEGTKNVIDAC----AELKVKRLIYTSSPSVVFDGVHGIINGNE 147 (485)
Q Consensus 83 ----~~d~Vih~aa~~-------~~~~~~~~~~~~nv~~t~~ll~a~----~~~~v~r~V~~SS~~vy~~~~~~~~~~~e 147 (485)
+.|++||+||.. .+.+++...+++|+.++.++.+++ ++.+-.++|++||.....
T Consensus 79 ~~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Iv~isS~~~~~----------- 147 (260)
T d1x1ta1 79 RQMGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQGFGRIINIASAHGLV----------- 147 (260)
T ss_dssp HHHSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS-----------
T ss_pred HHhCCCcEEEeecccccCCchhhhhHHhhhhhhhccccccccccchhhhhHhhcCCceEeeccccccee-----------
Confidence 489999999932 233467789999999988776664 444556999999976642
Q ss_pred CCCCCCCCCchHHHHHHHHHHHHHHHhC---CCCceEEEEecCCcccCCCCCChHHHHHHHHcCCCe---EEecCCCcee
Q 047227 148 ALPYPPKHNDFYSATKAEGEALVIKANG---TNGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSK---FIIGDGNNVY 221 (485)
Q Consensus 148 ~~~~~~~~~~~Y~~sK~~~E~~~~~~~~---~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~---~~~g~g~~~~ 221 (485)
+......|+.+|+..+.+.+.++. .+|+++.++.||.+-.|.....+............. .......+..
T Consensus 148 ----~~~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pl~ 223 (260)
T d1x1ta1 148 ----ASANKSAYVAAKHGVVGFTKVTALETAGQGITANAICPGWVRTPLVEKQISALAEKNGVDQETAARELLSEKQPSL 223 (260)
T ss_dssp ----CCTTCHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCC------------------------CHHHHCTTC
T ss_pred ----ccCCcchhhhhhhhHHHhHHHHHHHhchhCcEEEEEecCCCCChhhhhhhhhhhhhcCCChHHHHHHHHHhcCCCC
Confidence 123456899999999998887754 468999999999986553222211111100000000 0000111223
Q ss_pred ecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCC
Q 047227 222 DFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNM 260 (485)
Q Consensus 222 ~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~ 260 (485)
-+...+|+|++++.++... ..-..|+.+.+.+|
T Consensus 224 R~g~pediA~~v~fL~S~~------a~~itG~~i~vDGG 256 (260)
T d1x1ta1 224 QFVTPEQLGGTAVFLASDA------AAQITGTTVSVDGG 256 (260)
T ss_dssp CCBCHHHHHHHHHHHHSGG------GTTCCSCEEEESTT
T ss_pred CCcCHHHHHHHHHHHhChh------hCCCcCCEEEECcc
Confidence 4677999999999876421 22367889988776
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=99.72 E-value=7.8e-17 Score=149.88 Aligned_cols=221 Identities=11% Similarity=0.070 Sum_probs=154.5
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc
Q 047227 3 GEENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ 82 (485)
Q Consensus 3 ~~~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~ 82 (485)
+..++|++|||||++-||+++++.|.++| ++|.+.+|...... + ..+......++.++.+|++|++++.++++
T Consensus 2 nrL~gK~alVTGas~GIG~aia~~la~~G-a~V~~~~r~~~~~~----~--~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~ 74 (251)
T d1zk4a1 2 NRLDGKVAIITGGTLGIGLAIATKFVEEG-AKVMITGRHSDVGE----K--AAKSVGTPDQIQFFQHDSSDEDGWTKLFD 74 (251)
T ss_dssp CTTTTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHH----H--HHHHHCCTTTEEEEECCTTCHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHH----H--HHHHhCCCCcEEEEEccCCCHHHHHHHHH
Confidence 45678999999999999999999999999 69999998653211 1 11122234578999999999998877764
Q ss_pred -------CCCEEEEcCCCC-------CCCCchhhhHHHHHHHHHHHHHHHH----hcCCC-EEEEecCccccccCCCCcC
Q 047227 83 -------GAEVVFHMAAPN-------SSINNHKLHHSVNVEGTKNVIDACA----ELKVK-RLIYTSSPSVVFDGVHGII 143 (485)
Q Consensus 83 -------~~d~Vih~aa~~-------~~~~~~~~~~~~nv~~t~~ll~a~~----~~~v~-r~V~~SS~~vy~~~~~~~~ 143 (485)
+.|++||+|+.. .+.++++..+++|+.++..+.+++. +.+.. ++|++||...+.
T Consensus 75 ~~~~~~G~iDiLVnnAg~~~~~~~~~~~~~~~~~~~~vnl~g~~~~~~~~~~~m~~~~~gg~Ii~isS~~~~~------- 147 (251)
T d1zk4a1 75 ATEKAFGPVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNKGLGASIINMSSIEGFV------- 147 (251)
T ss_dssp HHHHHHSSCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEEECCGGGTS-------
T ss_pred HHHHHhCCceEEEeccccccccchhcccccchhhhccccccccchhHHHHHHHHHhcCCCCceEeeeccceec-------
Confidence 489999999922 2334667899999999988877754 34443 899999976541
Q ss_pred CCCCCCCCCCCCCchHHHHHHHHHHHHHHHh-----CCCCceEEEEecCCcccCCCCCCh-HHHHHHHHcCCCeEEecCC
Q 047227 144 NGNEALPYPPKHNDFYSATKAEGEALVIKAN-----GTNGLLTCCIRPSSIFGPGDRLLV-PSLVAAARAGKSKFIIGDG 217 (485)
Q Consensus 144 ~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~-----~~~g~~~~ilRp~~v~Gp~~~~~~-~~~~~~~~~g~~~~~~g~g 217 (485)
+......|+.+|...+.+.+.++ ..+|+++.++.||.+-.+...... +... .... ..
T Consensus 148 --------~~~~~~~Y~asKaal~~lt~~lA~e~~l~~~gIrVN~I~PG~i~T~~~~~~~~~~~~---~~~~------~~ 210 (251)
T d1zk4a1 148 --------GDPSLGAYNASKGAVRIMSKSAALDCALKDYDVRVNTVHPGYIKTPLVDDLPGAEEA---MSQR------TK 210 (251)
T ss_dssp --------CCTTCHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEEECCBCCHHHHTSTTHHHH---HTST------TT
T ss_pred --------cCCCchhHHHHHHHHhcchHHHHHHHhcCCCcEEEEEEeCCCCCChhHHhcCCHHHH---HHHH------hC
Confidence 12345689999999998877654 357899999999998654211111 1111 1111 11
Q ss_pred CceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCC
Q 047227 218 NNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNM 260 (485)
Q Consensus 218 ~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~ 260 (485)
....-+..++|+|.+++.++... ..-..|+.+.|.+|
T Consensus 211 ~pl~R~~~pedvA~~v~fL~S~~------s~~itG~~i~vDGG 247 (251)
T d1zk4a1 211 TPMGHIGEPNDIAYICVYLASNE------SKFATGSEFVVDGG 247 (251)
T ss_dssp CTTSSCBCHHHHHHHHHHHHSGG------GTTCCSCEEEESTT
T ss_pred CCCCCCcCHHHHHHHHHHHhCch------hCCCcCcEEEECcc
Confidence 12234677999999998875421 22267889988775
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.72 E-value=2.7e-17 Score=152.12 Aligned_cols=216 Identities=17% Similarity=0.098 Sum_probs=155.5
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcC-
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQG- 83 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~- 83 (485)
.++|++|||||++-||+++++.|.++| ++|.+.+|..... .+...+.+++..+.+|++|+++++++++.
T Consensus 3 l~GK~alITGas~GIG~aia~~la~~G-a~V~~~~r~~~~l---------~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~ 72 (242)
T d1cyda_ 3 FSGLRALVTGAGKGIGRDTVKALHASG-AKVVAVTRTNSDL---------VSLAKECPGIEPVCVDLGDWDATEKALGGI 72 (242)
T ss_dssp CTTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESCHHHH---------HHHHHHSTTCEEEECCTTCHHHHHHHHTTC
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEECCHHHH---------HHHHHhcCCCeEEEEeCCCHHHHHHHHHHc
Confidence 568999999999999999999999999 6999999864321 11111235788999999999999999874
Q ss_pred --CCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHHHh-----cCCCEEEEecCccccccCCCCcCCCCCCC
Q 047227 84 --AEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDACAE-----LKVKRLIYTSSPSVVFDGVHGIINGNEAL 149 (485)
Q Consensus 84 --~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~~~-----~~v~r~V~~SS~~vy~~~~~~~~~~~e~~ 149 (485)
.|++||+||... +.++++..+++|+.++..+.+++.. .+-.++|++||.....
T Consensus 73 g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~g~ii~isS~~~~~------------- 139 (242)
T d1cyda_ 73 GPVDLLVNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGVPGSIVNVSSMVAHV------------- 139 (242)
T ss_dssp CCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTS-------------
T ss_pred CCCeEEEECCccccchhHHHHHHHHHHHHHHHHhccchHHHHHhchhhhhhcccCcccccchhhccc-------------
Confidence 899999999321 3446778899999999998876543 2345899999976542
Q ss_pred CCCCCCCchHHHHHHHHHHHHHHHhC---CCCceEEEEecCCcccCCCCC--ChHHHHHHHHcCCCeEEecCCCceeecc
Q 047227 150 PYPPKHNDFYSATKAEGEALVIKANG---TNGLLTCCIRPSSIFGPGDRL--LVPSLVAAARAGKSKFIIGDGNNVYDFT 224 (485)
Q Consensus 150 ~~~~~~~~~Y~~sK~~~E~~~~~~~~---~~g~~~~ilRp~~v~Gp~~~~--~~~~~~~~~~~g~~~~~~g~g~~~~~~i 224 (485)
+......|+.+|+..+.+.+.++. .+|+++.++.||.+-.+.... .-+.....+.+..+ ..-+.
T Consensus 140 --~~~~~~~Y~asKaal~~lt~~lA~e~~~~gIrvN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~p---------l~R~~ 208 (242)
T d1cyda_ 140 --TFPNLITYSSTKGAMTMLTKAMAMELGPHKIRVNSVNPTVVLTDMGKKVSADPEFARKLKERHP---------LRKFA 208 (242)
T ss_dssp --CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBTTHHHHHHTCCHHHHHHHHHHST---------TSSCB
T ss_pred --cCCccccccchHHHHHHHHHHHHHHhCccCeecccCCCCCccCHHHHhhcCCHHHHHHHHhcCC---------CCCCc
Confidence 123456899999999999888764 368999999999986542110 01222333332222 22356
Q ss_pred cHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCC
Q 047227 225 YVANVAHAHICAERALASEVTVAEKAAGQAYFVTNM 260 (485)
Q Consensus 225 ~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~ 260 (485)
.++|+|+++..++... ..-..|+.+.|.+|
T Consensus 209 ~peeva~~v~fL~S~~------s~~itG~~i~vDGG 238 (242)
T d1cyda_ 209 EVEDVVNSILFLLSDR------SASTSGGGILVDAG 238 (242)
T ss_dssp CHHHHHHHHHHHHSGG------GTTCCSSEEEESTT
T ss_pred CHHHHHHHHHHHhCch------hcCcCCceEEeCcc
Confidence 7899999998875421 22367899988775
|
| >d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (s)-1-phenylethanol dehydrogenase species: Azoarcus sp. ebn1 [TaxId: 76114]
Probab=99.72 E-value=7.9e-17 Score=149.47 Aligned_cols=220 Identities=17% Similarity=0.136 Sum_probs=150.6
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc-
Q 047227 4 EENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ- 82 (485)
Q Consensus 4 ~~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~- 82 (485)
..++|.+|||||++-||+++++.|.++| ++|.+.+|.+.... + .... ....++..+.+|++|++++.++++
T Consensus 2 rL~gKvalVTGas~GIG~aia~~la~~G-a~V~~~~~~~~~~~----~-~~~~--~~g~~~~~~~~Dvs~~~~v~~~~~~ 73 (247)
T d2ew8a1 2 RLKDKLAVITGGANGIGRAIAERFAVEG-ADIAIADLVPAPEA----E-AAIR--NLGRRVLTVKCDVSQPGDVEAFGKQ 73 (247)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSCCHHH----H-HHHH--HTTCCEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCchHHH----H-HHHH--HcCCcEEEEEeeCCCHHHHHHHHHH
Confidence 3578999999999999999999999999 69999988643110 0 0011 124578999999999998887764
Q ss_pred ------CCCEEEEcCCCC-------CCCCchhhhHHHHHHHHHHHHHHHH----hcCCCEEEEecCccccccCCCCcCCC
Q 047227 83 ------GAEVVFHMAAPN-------SSINNHKLHHSVNVEGTKNVIDACA----ELKVKRLIYTSSPSVVFDGVHGIING 145 (485)
Q Consensus 83 ------~~d~Vih~aa~~-------~~~~~~~~~~~~nv~~t~~ll~a~~----~~~v~r~V~~SS~~vy~~~~~~~~~~ 145 (485)
+.|++||+||.. .+.++++..+++|+.++..+.+++. +.+-.++|++||.....
T Consensus 74 ~~~~~G~iDilVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Iv~isS~~~~~--------- 144 (247)
T d2ew8a1 74 VISTFGRCDILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRNGWGRIINLTSTTYWL--------- 144 (247)
T ss_dssp HHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGGS---------
T ss_pred HHHHcCCCCEEEECCCCCCCCChHhCCHHHhhhhheeehhhhhHHHHHHHhHHHhcCCCCccccccchhcc---------
Confidence 489999999932 2335778899999999888877654 44556999999976542
Q ss_pred CCCCCCCCCCCchHHHHHHHHHHHHHHHhC---CCCceEEEEecCCcccCCCCCCh-HHHHHHHHcCCCeEEecCCCcee
Q 047227 146 NEALPYPPKHNDFYSATKAEGEALVIKANG---TNGLLTCCIRPSSIFGPGDRLLV-PSLVAAARAGKSKFIIGDGNNVY 221 (485)
Q Consensus 146 ~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~---~~g~~~~ilRp~~v~Gp~~~~~~-~~~~~~~~~g~~~~~~g~g~~~~ 221 (485)
+......|+.+|+..+.+.+.++. .+|+++.++.||.+-.+...... ......... ......
T Consensus 145 ------~~~~~~~Y~asKaal~~ltk~lA~ela~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~--------~~~~l~ 210 (247)
T d2ew8a1 145 ------KIEAYTHYISTKAANIGFTRALASDLGKDGITVNAIAPSLVRTATTEASALSAMFDVLPN--------MLQAIP 210 (247)
T ss_dssp ------CCSSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCC------------------C--------TTSSSC
T ss_pred ------cCcccccchhhhccHHHHHHHHHHHhcccCeEEEEEeeCCCCCccccccccchhHHHHHH--------HhccCC
Confidence 223456899999999998887764 46899999999998765322111 111111110 111222
Q ss_pred ecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCC
Q 047227 222 DFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNM 260 (485)
Q Consensus 222 ~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~ 260 (485)
-+..++|+|++++.++... ..-..|+.+.|.+|
T Consensus 211 r~~~pedvA~~v~fL~S~~------s~~itG~~i~vDGG 243 (247)
T d2ew8a1 211 RLQVPLDLTGAAAFLASDD------ASFITGQTLAVDGG 243 (247)
T ss_dssp SCCCTHHHHHHHHHHTSGG------GTTCCSCEEEESSS
T ss_pred CCCCHHHHHHHHHHHhCch------hcCCcCCeEEECCC
Confidence 3567899999998775311 22267899988775
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=99.72 E-value=8e-17 Score=150.37 Aligned_cols=224 Identities=15% Similarity=0.070 Sum_probs=157.0
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc--
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ-- 82 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 82 (485)
.++|++|||||++-||+++++.|.++| ++|.+.+|..........+ +.......++..+.+|++|++++.++++
T Consensus 2 l~gK~alITGas~GIG~aia~~la~~G-a~V~i~~r~~~~l~~~~~~---~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~ 77 (258)
T d1iy8a_ 2 FTDRVVLITGGGSGLGRATAVRLAAEG-AKLSLVDVSSEGLEASKAA---VLETAPDAEVLTTVADVSDEAQVEAYVTAT 77 (258)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHH---HHHHCTTCCEEEEECCTTSHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHH---HHhhCCCCeEEEEeccCCCHHHHHHHHHHH
Confidence 467999999999999999999999999 6999999875421111010 1111223478899999999998887764
Q ss_pred -----CCCEEEEcCCCC---C-----CCCchhhhHHHHHHHHHHHHHHHH----hcCCCEEEEecCccccccCCCCcCCC
Q 047227 83 -----GAEVVFHMAAPN---S-----SINNHKLHHSVNVEGTKNVIDACA----ELKVKRLIYTSSPSVVFDGVHGIING 145 (485)
Q Consensus 83 -----~~d~Vih~aa~~---~-----~~~~~~~~~~~nv~~t~~ll~a~~----~~~v~r~V~~SS~~vy~~~~~~~~~~ 145 (485)
+.|++||+||.. . +.++++..+++|+.++.++.+++. +.+-.++|++||.....
T Consensus 78 ~~~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Ii~isS~~~~~--------- 148 (258)
T d1iy8a_ 78 TERFGRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQGSGMVVNTASVGGIR--------- 148 (258)
T ss_dssp HHHHSCCSEEEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTS---------
T ss_pred HHHhCCCCEEEECCcccccCCchhhhhhhHHHHHhhhhccchhhhhhhhHhhhhhhcCCCCcccccHhhcc---------
Confidence 489999999922 1 334677899999999999887654 34567999999976542
Q ss_pred CCCCCCCCCCCchHHHHHHHHHHHHHHHhC---CCCceEEEEecCCcccCCCC--------CChHHHHHHHHcCCCeEEe
Q 047227 146 NEALPYPPKHNDFYSATKAEGEALVIKANG---TNGLLTCCIRPSSIFGPGDR--------LLVPSLVAAARAGKSKFII 214 (485)
Q Consensus 146 ~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~---~~g~~~~ilRp~~v~Gp~~~--------~~~~~~~~~~~~g~~~~~~ 214 (485)
+......|+.+|...+.+.+.++. .+|+++.++.||.+..|... ...........+..+
T Consensus 149 ------~~~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~i~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~p---- 218 (258)
T d1iy8a_ 149 ------GIGNQSGYAAAKHGVVGLTRNSAVEYGRYGIRINAIAPGAIWTPMVENSMKQLDPENPRKAAEEFIQVNP---- 218 (258)
T ss_dssp ------BCSSBHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSHHHHHHHHHHCTTCHHHHHHHHHTTCT----
T ss_pred ------CCCCchHHHHHHHHHHHHHHHHHHHhCccCceEEEEeeCcccCHHHHHHHhhcCcccHHHHHHHHHhcCC----
Confidence 123457899999999998887754 46899999999998654210 111222222333222
Q ss_pred cCCCceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCCC
Q 047227 215 GDGNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMES 262 (485)
Q Consensus 215 g~g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~ 262 (485)
..-+...+|+|.+++.++... ..-..|+.+.|.+|..
T Consensus 219 -----l~R~~~p~dvA~~v~fL~S~~------s~~itG~~i~VDGG~s 255 (258)
T d1iy8a_ 219 -----SKRYGEAPEIAAVVAFLLSDD------ASYVNATVVPIDGGQS 255 (258)
T ss_dssp -----TCSCBCHHHHHHHHHHHTSGG------GTTCCSCEEEESTTTT
T ss_pred -----CCCCcCHHHHHHHHHHHhCch------hcCCcCceEEcCcchh
Confidence 223567899999998875421 2236789999987753
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=99.71 E-value=6.5e-17 Score=150.71 Aligned_cols=221 Identities=14% Similarity=0.130 Sum_probs=157.0
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc--
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ-- 82 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 82 (485)
.++|++|||||++-||+++++.|.++| ++|.+.+|+........++ +.. ...++.++.+|++|++++.++++
T Consensus 9 L~gK~alITGas~GIG~aia~~la~~G-a~V~~~~r~~~~~~~~~~~---l~~--~g~~~~~~~~Dvs~~~~~~~~~~~~ 82 (255)
T d1fmca_ 9 LDGKCAIITGAGAGIGKEIAITFATAG-ASVVVSDINADAANHVVDE---IQQ--LGGQAFACRCDITSEQELSALADFA 82 (255)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHTTT-CEEEEEESCHHHHHHHHHH---HHH--TTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHH---HHH--cCCcEEEEEccCCCHHHHHHHHHHH
Confidence 467999999999999999999999999 6999999865421111010 111 13578899999999998877764
Q ss_pred -----CCCEEEEcCCCC------CCCCchhhhHHHHHHHHHHHHHHHHh----cCCCEEEEecCccccccCCCCcCCCCC
Q 047227 83 -----GAEVVFHMAAPN------SSINNHKLHHSVNVEGTKNVIDACAE----LKVKRLIYTSSPSVVFDGVHGIINGNE 147 (485)
Q Consensus 83 -----~~d~Vih~aa~~------~~~~~~~~~~~~nv~~t~~ll~a~~~----~~v~r~V~~SS~~vy~~~~~~~~~~~e 147 (485)
+.|++||+||.. .+.++++..+++|+.++..+.+++.. .+-.++|++||.....
T Consensus 83 ~~~~g~iDilvnnAG~~~~~~~e~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~g~Ii~isS~~~~~----------- 151 (255)
T d1fmca_ 83 ISKLGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTITSMAAEN----------- 151 (255)
T ss_dssp HHHHSSCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTC-----------
T ss_pred HHHcCCCCEeeeCCcCCCCCcccCCHHHHHHHHHHHHHHhhhhHHHHHhhhccccccccccccccchhc-----------
Confidence 489999999922 23446778999999998888776543 4455899999976542
Q ss_pred CCCCCCCCCchHHHHHHHHHHHHHHHhC---CCCceEEEEecCCcccCCCC-CChHHHHHHHHcCCCeEEecCCCceeec
Q 047227 148 ALPYPPKHNDFYSATKAEGEALVIKANG---TNGLLTCCIRPSSIFGPGDR-LLVPSLVAAARAGKSKFIIGDGNNVYDF 223 (485)
Q Consensus 148 ~~~~~~~~~~~Y~~sK~~~E~~~~~~~~---~~g~~~~ilRp~~v~Gp~~~-~~~~~~~~~~~~g~~~~~~g~g~~~~~~ 223 (485)
+......|+.+|+..+.+.+.++. .+|+++.++.||.+-.+... ..-+.......+..+. .-+
T Consensus 152 ----~~~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~e~~~~~~~~~pl---------~R~ 218 (255)
T d1fmca_ 152 ----KNINMTSYASSKAAASHLVRNMAFDLGEKNIRVNGIAPGAILTDALKSVITPEIEQKMLQHTPI---------RRL 218 (255)
T ss_dssp ----CCTTCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCSHHHHTTCCHHHHHHHHHTCSS---------CSC
T ss_pred ----cccccccchhHHHHHHHHHHHHHHHhCccCeEEEEeeeCcCcChHhhccCCHHHHHHHHhcCCC---------CCC
Confidence 234557899999999999887664 46899999999998654211 1123334444443321 235
Q ss_pred ccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCC
Q 047227 224 TYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNME 261 (485)
Q Consensus 224 i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~ 261 (485)
..++|+|.++..++... ..-..|+.+.+.+|.
T Consensus 219 g~pedvA~~v~fL~S~~------s~~itG~~i~vDGG~ 250 (255)
T d1fmca_ 219 GQPQDIANAALFLCSPA------ASWVSGQILTVSGGG 250 (255)
T ss_dssp BCHHHHHHHHHHHHSGG------GTTCCSCEEEESTTS
T ss_pred cCHHHHHHHHHHHhCch------hcCCcCCEEEECcCc
Confidence 66899999999886421 222678999888764
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Probab=99.71 E-value=1e-16 Score=149.13 Aligned_cols=218 Identities=14% Similarity=0.103 Sum_probs=152.9
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc--
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ-- 82 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 82 (485)
.++|++|||||++-||.++++.|.++| ++|.+.+|....... ....+ ..++.++.+|++|++++.++++
T Consensus 3 L~gK~alVTGas~GIG~aia~~la~~G-a~V~~~~r~~~~~~~-------~~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~ 73 (254)
T d1hdca_ 3 LSGKTVIITGGARGLGAEAARQAVAAG-ARVVLADVLDEEGAA-------TAREL-GDAARYQHLDVTIEEDWQRVVAYA 73 (254)
T ss_dssp CCCSEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHH-------HHHTT-GGGEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEeCcCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHH-------HHHHh-CCceEEEEcccCCHHHHHHHHHHH
Confidence 568999999999999999999999999 699999987542111 11111 3568899999999998887764
Q ss_pred -----CCCEEEEcCCCC-------CCCCchhhhHHHHHHHHHHHHHHHH----hcCCCEEEEecCccccccCCCCcCCCC
Q 047227 83 -----GAEVVFHMAAPN-------SSINNHKLHHSVNVEGTKNVIDACA----ELKVKRLIYTSSPSVVFDGVHGIINGN 146 (485)
Q Consensus 83 -----~~d~Vih~aa~~-------~~~~~~~~~~~~nv~~t~~ll~a~~----~~~v~r~V~~SS~~vy~~~~~~~~~~~ 146 (485)
+.|++||+|+.. ...+++...+++|+.++..+.+++. +.+-.++|++||...+.
T Consensus 74 ~~~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~~~G~II~isS~~~~~---------- 143 (254)
T d1hdca_ 74 REEFGSVDGLVNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDAGGGSIVNISSAAGLM---------- 143 (254)
T ss_dssp HHHHSCCCEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS----------
T ss_pred HHHcCCccEEEecCccccccccccccccccchhhhHHhhHHHHHHHHHHHHHhhcCCCeecccccchhcc----------
Confidence 489999999932 2334677899999999988877764 44567999999976642
Q ss_pred CCCCCCCCCCchHHHHHHHHHHHHHHHhC---CCCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCceeec
Q 047227 147 EALPYPPKHNDFYSATKAEGEALVIKANG---TNGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDF 223 (485)
Q Consensus 147 e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~---~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~ 223 (485)
+......|+.+|+..+.+.+.++. .+|+++.++.||.+..+. .........-... ......-+
T Consensus 144 -----~~~~~~~Y~asKaal~~lt~~lA~e~a~~gIrVN~I~PG~v~T~~--------~~~~~~~~~~~~~-~~~pl~R~ 209 (254)
T d1hdca_ 144 -----GLALTSSYGASKWGVRGLSKLAAVELGTDRIRVNSVHPGMTYTPM--------TAETGIRQGEGNY-PNTPMGRV 209 (254)
T ss_dssp -----CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHH--------HHHHTCCCSTTSC-TTSTTSSC
T ss_pred -----cccchhhHHHHHHHHHHHHHHHHHHhCCCceEEEEeeeCcccCcc--------chhcCHHHHHHHH-hCCCCCCC
Confidence 123457899999999999888764 468999999999986431 1111111000000 00111112
Q ss_pred -ccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCC
Q 047227 224 -TYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNME 261 (485)
Q Consensus 224 -i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~ 261 (485)
+..+|+|++++.++... ..-..|+.+.+.+|.
T Consensus 210 g~~PedvA~~v~fL~S~~------a~~itG~~i~vDGG~ 242 (254)
T d1hdca_ 210 GNEPGEIAGAVVKLLSDT------SSYVTGAELAVDGGW 242 (254)
T ss_dssp B-CHHHHHHHHHHHHSGG------GTTCCSCEEEESTTT
T ss_pred CCCHHHHHHHHHHHhchh------hCCCCCceEEeCCCc
Confidence 35799999999876421 222679999998774
|
| >d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase species: Bacillus megaterium [TaxId: 1404]
Probab=99.71 E-value=8.8e-17 Score=150.28 Aligned_cols=225 Identities=16% Similarity=0.104 Sum_probs=157.7
Q ss_pred CCCCCCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhh--cCCCeEEEEecCCCHHHHH
Q 047227 1 MSGEENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEAL--RSGRAHYVSFDLRHKAQVL 78 (485)
Q Consensus 1 M~~~~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~Dl~d~~~l~ 78 (485)
|-...++|++|||||++-||.++++.|.++| ++|.+.+|......+. ..+.+ ...++..+.+|++|++++.
T Consensus 1 M~~dL~gK~alITGas~GIG~aia~~la~~G-~~Vv~~~r~~~~~~~~------~~~~~~~~g~~~~~~~~Dvt~~~~v~ 73 (261)
T d1geea_ 1 MYKDLEGKVVVITGSSTGLGKSMAIRFATEK-AKVVVNYRSKEDEANS------VLEEIKKVGGEAIAVKGDVTVESDVI 73 (261)
T ss_dssp CCGGGTTCEEEETTCSSHHHHHHHHHHHHTT-CEEEEEESSCHHHHHH------HHHHHHHTTCEEEEEECCTTSHHHHH
T ss_pred CCCCCCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCCcHHHHHH------HHHHHHhcCCcEEEEEccCCCHHHHH
Confidence 6666788999999999999999999999999 6999998864311110 11111 1356888999999999888
Q ss_pred HHhc-------CCCEEEEcCCCC-------CCCCchhhhHHHHHHHHHHHHHHHH----hcCC-CEEEEecCccccccCC
Q 047227 79 QALQ-------GAEVVFHMAAPN-------SSINNHKLHHSVNVEGTKNVIDACA----ELKV-KRLIYTSSPSVVFDGV 139 (485)
Q Consensus 79 ~~~~-------~~d~Vih~aa~~-------~~~~~~~~~~~~nv~~t~~ll~a~~----~~~v-~r~V~~SS~~vy~~~~ 139 (485)
++++ +.|++||+||.. .+.++++..+++|+.++.++.+++. +.+- .++|++||.....
T Consensus 74 ~~~~~~~~~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~g~~Iv~isS~~~~~--- 150 (261)
T d1geea_ 74 NLVQSAIKEFGKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDIKGTVINMSSVHEKI--- 150 (261)
T ss_dssp HHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECCGGGTS---
T ss_pred HHHHHHHHHhCCCCEeeccceecCCcchhhcCHHHHHHHHHHhcccchhHHHHHhhhhccccccccccccccchhcc---
Confidence 7764 489999999932 2344678899999999888866643 4443 4688999876542
Q ss_pred CCcCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhC---CCCceEEEEecCCcccCCCCCCh--HHHHHHHHcCCCeEEe
Q 047227 140 HGIINGNEALPYPPKHNDFYSATKAEGEALVIKANG---TNGLLTCCIRPSSIFGPGDRLLV--PSLVAAARAGKSKFII 214 (485)
Q Consensus 140 ~~~~~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~---~~g~~~~ilRp~~v~Gp~~~~~~--~~~~~~~~~g~~~~~~ 214 (485)
+......|+.+|+..+.+.+.++. .+|+++.++.||.+..|...... +.......+..+
T Consensus 151 ------------~~~~~~~Y~asKaal~~lt~~lA~e~~~~gIrVN~I~PG~v~T~~~~~~~~~~~~~~~~~~~~p---- 214 (261)
T d1geea_ 151 ------------PWPLFVHYAASKGGMKLMTETLALEYAPKGIRVNNIGPGAINTPINAEKFADPEQRADVESMIP---- 214 (261)
T ss_dssp ------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSGGGHHHHHSHHHHHHHHTTCT----
T ss_pred ------------cCccccccccCCccchhhHHHHHHHhhhhCcEEEEEeeCcCcCHhHhhhcCCHHHHHHHHhcCC----
Confidence 123456899999999999887654 46899999999998755321111 112222232222
Q ss_pred cCCCceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCCC
Q 047227 215 GDGNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMES 262 (485)
Q Consensus 215 g~g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~ 262 (485)
..-+..++|+|.+++.++... ..-..|+.+.|.+|..
T Consensus 215 -----l~R~~~pediA~~v~fL~S~~------s~~itG~~i~vDGG~s 251 (261)
T d1geea_ 215 -----MGYIGEPEEIAAVAAWLASSE------ASYVTGITLFADGGMT 251 (261)
T ss_dssp -----TSSCBCHHHHHHHHHHHHSGG------GTTCCSCEEEESTTGG
T ss_pred -----CCCCCCHHHHHHHHHHHhCch------hcCCcCCeEEECCCee
Confidence 223567899999998875421 2226799999988753
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=99.71 E-value=1.1e-16 Score=148.67 Aligned_cols=222 Identities=18% Similarity=0.098 Sum_probs=155.5
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc--
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ-- 82 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 82 (485)
.++|++|||||++-||+++++.|.++| ++|.+.+|..........+ +.. ....++..+.+|++|++++.++++
T Consensus 3 l~gK~~lITGas~GIG~aia~~la~~G-a~V~i~~r~~~~~~~~~~~---l~~-~~g~~~~~~~~Dv~~~~~v~~~~~~~ 77 (251)
T d1vl8a_ 3 LRGRVALVTGGSRGLGFGIAQGLAEAG-CSVVVASRNLEEASEAAQK---LTE-KYGVETMAFRCDVSNYEEVKKLLEAV 77 (251)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHH---HHH-HHCCCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHH---HHH-HhCCcEEEEEccCCCHHHHHHHHHHH
Confidence 467999999999999999999999999 6999999875422111111 111 114578899999999998887764
Q ss_pred -----CCCEEEEcCCCC-------CCCCchhhhHHHHHHHHHHHHHHHHh----cCCCEEEEecCccccccCCCCcCCCC
Q 047227 83 -----GAEVVFHMAAPN-------SSINNHKLHHSVNVEGTKNVIDACAE----LKVKRLIYTSSPSVVFDGVHGIINGN 146 (485)
Q Consensus 83 -----~~d~Vih~aa~~-------~~~~~~~~~~~~nv~~t~~ll~a~~~----~~v~r~V~~SS~~vy~~~~~~~~~~~ 146 (485)
+.|++||+||.. .+.++++..+++|+.++..+.+++.. .+-.++|++||......
T Consensus 78 ~~~~g~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~i~S~~~~~~--------- 148 (251)
T d1vl8a_ 78 KEKFGKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESDNPSIINIGSLTVEEV--------- 148 (251)
T ss_dssp HHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCSSCEEEEECCGGGTCC---------
T ss_pred HHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhhhhhhhhhhhhhcccccccccccccccchhccc---------
Confidence 489999999932 23446788999999999888777543 45569999998654210
Q ss_pred CCCCCCCCCCchHHHHHHHHHHHHHHHhC---CCCceEEEEecCCcccCCCCCCh--HHHHHHHHcCCCeEEecCCCcee
Q 047227 147 EALPYPPKHNDFYSATKAEGEALVIKANG---TNGLLTCCIRPSSIFGPGDRLLV--PSLVAAARAGKSKFIIGDGNNVY 221 (485)
Q Consensus 147 e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~---~~g~~~~ilRp~~v~Gp~~~~~~--~~~~~~~~~g~~~~~~g~g~~~~ 221 (485)
+......|+.+|...+.+.+.++. .+|+++.++.||.+-.+...... +.......+..+. .
T Consensus 149 -----~~~~~~~Y~asKaal~~lt~~lA~e~~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~pl---------~ 214 (251)
T d1vl8a_ 149 -----TMPNISAYAASKGGVASLTKALAKEWGRYGIRVNVIAPGWYRTKMTEAVFSDPEKLDYMLKRIPL---------G 214 (251)
T ss_dssp -----CSSSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSTTTHHHHTCHHHHHHHHHTCTT---------S
T ss_pred -----cCccccchHHHHHhHHHHHHHHHHHhcccCeEEEEEeeCcccCHHHHhccCCHHHHHHHHhcCCC---------C
Confidence 123356899999999999887764 36899999999998765432111 2233333333221 2
Q ss_pred ecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCC
Q 047227 222 DFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNM 260 (485)
Q Consensus 222 ~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~ 260 (485)
-+..++|+|++++.++... ..-..|+.+.|.+|
T Consensus 215 R~~~pedvA~~v~fL~S~~------a~~itG~~i~vDGG 247 (251)
T d1vl8a_ 215 RTGVPEDLKGVAVFLASEE------AKYVTGQIIFVDGG 247 (251)
T ss_dssp SCBCGGGGHHHHHHHHSGG------GTTCCSCEEEESTT
T ss_pred CCCCHHHHHHHHHHHhCch------hCCCcCcEEEeCcC
Confidence 3556899999998775421 22267899988765
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.70 E-value=2.6e-16 Score=145.96 Aligned_cols=219 Identities=19% Similarity=0.162 Sum_probs=155.0
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc-
Q 047227 4 EENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ- 82 (485)
Q Consensus 4 ~~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~- 82 (485)
..++|++|||||++-||+++++.|.++| ++|.+.+|....... +.. +.+++.++.+|++|++++.++++
T Consensus 3 rl~GK~alITGas~GIG~aia~~la~~G-a~V~i~~r~~~~~~~-------~~~--~~~~~~~~~~Dvs~~~~v~~~~~~ 72 (250)
T d1ydea1 3 RYAGKVVVVTGGGRGIGAGIVRAFVNSG-ARVVICDKDESGGRA-------LEQ--ELPGAVFILCDVTQEDDVKTLVSE 72 (250)
T ss_dssp TTTTCEEEEETCSSHHHHHHHHHHHHTT-CEEEEEESCHHHHHH-------HHH--HCTTEEEEECCTTSHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHH-------HHH--hcCCCeEEEccCCCHHHHHHHHHH
Confidence 4578999999999999999999999999 699999886432110 111 23578899999999998887764
Q ss_pred ------CCCEEEEcCCCC---C-----CCCchhhhHHHHHHHHHHHHHHHHhc---CCCEEEEecCccccccCCCCcCCC
Q 047227 83 ------GAEVVFHMAAPN---S-----SINNHKLHHSVNVEGTKNVIDACAEL---KVKRLIYTSSPSVVFDGVHGIING 145 (485)
Q Consensus 83 ------~~d~Vih~aa~~---~-----~~~~~~~~~~~nv~~t~~ll~a~~~~---~v~r~V~~SS~~vy~~~~~~~~~~ 145 (485)
+.|++||+||.. . +.++++..+++|+.++.++.+++... +-.++|++||.....
T Consensus 73 ~~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~G~Ii~isS~~~~~--------- 143 (250)
T d1ydea1 73 TIRRFGRLDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKSQGNVINISSLVGAI--------- 143 (250)
T ss_dssp HHHHHSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCHHHHH---------
T ss_pred HHHhcCCCCEEEecccccccccccccccHHHHHHHHHHhhhhHHHHHHHhhHHHHhCCCCCcccccccccc---------
Confidence 489999999921 1 22356788999999998887775532 125899999977652
Q ss_pred CCCCCCCCCCCchHHHHHHHHHHHHHHHhC---CCCceEEEEecCCcccCCC------CCChHHHHHHHHcCCCeEEecC
Q 047227 146 NEALPYPPKHNDFYSATKAEGEALVIKANG---TNGLLTCCIRPSSIFGPGD------RLLVPSLVAAARAGKSKFIIGD 216 (485)
Q Consensus 146 ~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~---~~g~~~~ilRp~~v~Gp~~------~~~~~~~~~~~~~g~~~~~~g~ 216 (485)
+......|+.+|+..+.+.+.++. .+|+++.++.||.|--|.. ..-............+
T Consensus 144 ------~~~~~~~Y~asKaal~~lt~~lA~e~a~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~p------ 211 (250)
T d1ydea1 144 ------GQAQAVPYVATKGAVTAMTKALALDESPYGVRVNCISPGNIWTPLWEELAALMPDPRASIREGMLAQP------ 211 (250)
T ss_dssp ------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCHHHHHHHTTSSSHHHHHHHHHHTST------
T ss_pred ------cccCcchhHHHHhhHHHHHHHHHHHhcccCeEEEEEeeCCCCChhHHHHhhcCCCHHHHHHHHHhcCC------
Confidence 123457899999999999887764 4689999999999854310 0011112222222222
Q ss_pred CCceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCCCc
Q 047227 217 GNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMESI 263 (485)
Q Consensus 217 g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~~ 263 (485)
..-+...+|+|.++..++.. . .-..|+.+.+.+|..+
T Consensus 212 ---l~R~g~p~eva~~v~fL~Sd-a------~~itG~~i~vDGG~~l 248 (250)
T d1ydea1 212 ---LGRMGQPAEVGAAAVFLASE-A------NFCTGIELLVTGGAEL 248 (250)
T ss_dssp ---TSSCBCHHHHHHHHHHHHHH-C------TTCCSCEEEESTTTTS
T ss_pred ---CCCCCCHHHHHHHHHHHhCc-c------CCCcCCeEEECCCccc
Confidence 22366799999999887642 1 2267899988877543
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=99.70 E-value=9.2e-17 Score=149.89 Aligned_cols=221 Identities=19% Similarity=0.160 Sum_probs=155.8
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc--
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ-- 82 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 82 (485)
.++|++|||||++-||+++++.|.++| ++|.+.+|....... ....+ ..++..+.+|++|++++.++++
T Consensus 3 L~gK~alVTGas~GIG~aia~~la~~G-a~V~~~~r~~~~l~~-------~~~~~-~~~~~~~~~Dvt~~~~v~~~~~~~ 73 (256)
T d1k2wa_ 3 LDGKTALITGSARGIGRAFAEAYVREG-ARVAIADINLEAARA-------TAAEI-GPAACAIALDVTDQASIDRCVAEL 73 (256)
T ss_dssp TTTEEEEEETCSSHHHHHHHHHHHHTT-EEEEEEESCHHHHHH-------HHHHH-CTTEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHH-------HHHHh-CCceEEEEeeCCCHHHHHHHHHHH
Confidence 467999999999999999999999999 699999986432111 11112 4678899999999998887764
Q ss_pred -----CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHHHh----c-CCCEEEEecCccccccCCCCcCCC
Q 047227 83 -----GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDACAE----L-KVKRLIYTSSPSVVFDGVHGIING 145 (485)
Q Consensus 83 -----~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~~~----~-~v~r~V~~SS~~vy~~~~~~~~~~ 145 (485)
+.|++||+||... +.++++..+++|+.++..+.+++.. . .-.++|++||...+.
T Consensus 74 ~~~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~~~~~~~~g~Iv~isS~~~~~--------- 144 (256)
T d1k2wa_ 74 LDRWGSIDILVNNAALFDLAPIVEITRESYDRLFAINVSGTLFMMQAVARAMIAGGRGGKIINMASQAGRR--------- 144 (256)
T ss_dssp HHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTS---------
T ss_pred HHHhCCccEEEeecccccccccccCCHHHHHhhhceeeeccccchhhccchhHHhccCCccccccchhhcc---------
Confidence 4899999999322 3346778999999999888876432 2 246899999976642
Q ss_pred CCCCCCCCCCCchHHHHHHHHHHHHHHHhC---CCCceEEEEecCCcccCCCCCChHHH-----------HHHHHcCCCe
Q 047227 146 NEALPYPPKHNDFYSATKAEGEALVIKANG---TNGLLTCCIRPSSIFGPGDRLLVPSL-----------VAAARAGKSK 211 (485)
Q Consensus 146 ~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~---~~g~~~~ilRp~~v~Gp~~~~~~~~~-----------~~~~~~g~~~ 211 (485)
+......|+.+|+..+.+.+.++. .+|+++.++.||.+-.|........+ ...+.+..
T Consensus 145 ------~~~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 216 (256)
T d1k2wa_ 145 ------GEALVGVYCATKAAVISLTQSAGLNLIRHGINVNAIAPGVVDGEHWDGVDAKFADYENLPRGEKKRQVGAAV-- 216 (256)
T ss_dssp ------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCTTHHHHHHHHHHHHTCCTTHHHHHHHHHS--
T ss_pred ------ccccccchhhhhhHHHHHHHHHHHHhcccCeEEEEEecCCCCchhhhhhhhhhhhhccCChHHHHHHHHhcC--
Confidence 233457899999999999887763 46899999999988765321111111 11111111
Q ss_pred EEecCCCceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCCCcc
Q 047227 212 FIIGDGNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMESIK 264 (485)
Q Consensus 212 ~~~g~g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~~t 264 (485)
+..-+...+|+|.+++.++.. . ..-..|+.+.|.+|..+|
T Consensus 217 -------PlgR~~~p~evA~~v~fL~S~---~---a~~iTG~~i~vDGG~~ms 256 (256)
T d1k2wa_ 217 -------PFGRMGRAEDLTGMAIFLATP---E---ADYIVAQTYNVDGGNWMS 256 (256)
T ss_dssp -------TTSSCBCHHHHHHHHHHTTSG---G---GTTCCSCEEEESTTSSCC
T ss_pred -------CCCCCcCHHHHHHHHHHHhCc---h---hCCccCceEEECcchhhC
Confidence 122356789999999876431 1 223679999998876543
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Probab=99.70 E-value=2.5e-16 Score=147.12 Aligned_cols=219 Identities=15% Similarity=0.068 Sum_probs=155.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc---
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ--- 82 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 82 (485)
++|.+|||||++-||.++++.|.++| ++|.+.+|+........++ +.. ...++..+.+|++|++++.++++
T Consensus 1 DgKValITGas~GIG~aia~~la~~G-a~V~i~~r~~~~l~~~~~~---l~~--~g~~~~~~~~Dvs~~~~v~~~~~~~~ 74 (257)
T d2rhca1 1 DSEVALVTGATSGIGLEIARRLGKEG-LRVFVCARGEEGLRTTLKE---LRE--AGVEADGRTCDVRSVPEIEALVAAVV 74 (257)
T ss_dssp CCCEEEEESCSSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHH---HHH--TTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHH---HHh--cCCcEEEEEeecCCHHHHHHHHHHHH
Confidence 46889999999999999999999999 6999999864321111111 111 13578999999999998887764
Q ss_pred ----CCCEEEEcCCCC-------CCCCchhhhHHHHHHHHHHHHHHHHh------cCCCEEEEecCccccccCCCCcCCC
Q 047227 83 ----GAEVVFHMAAPN-------SSINNHKLHHSVNVEGTKNVIDACAE------LKVKRLIYTSSPSVVFDGVHGIING 145 (485)
Q Consensus 83 ----~~d~Vih~aa~~-------~~~~~~~~~~~~nv~~t~~ll~a~~~------~~v~r~V~~SS~~vy~~~~~~~~~~ 145 (485)
+.|++||+||.. .+.++++..+++|+.++.++.+++.. .+..++|++||...+.
T Consensus 75 ~~~g~iDilVnnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~~~~~~~~~g~Ii~i~S~~~~~--------- 145 (257)
T d2rhca1 75 ERYGPVDVLVNNAGRPGGGATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLERGTGRIVNIASTGGKQ--------- 145 (257)
T ss_dssp HHTCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTTSHHHHTEEEEEEECCGGGTS---------
T ss_pred HHhCCCCEEEecccccCCCChHHcCHHHHHHHHHHHhhhhhHHHHHHhHHHHHHhcCCccccccccccccc---------
Confidence 489999999922 23446778999999999999998754 3445899999876642
Q ss_pred CCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCC-----------CChHHHHHHHHcCCCe
Q 047227 146 NEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDR-----------LLVPSLVAAARAGKSK 211 (485)
Q Consensus 146 ~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~-----------~~~~~~~~~~~~g~~~ 211 (485)
+......|+.+|+..+.+.+.++.+ +|+++.++.||.+-.|... ...+.....+.+..|
T Consensus 146 ------~~~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~e~~~~~~~~~P- 218 (257)
T d2rhca1 146 ------GVVHAAPYSASKHGVVGFTKALGLELARTGITVNAVCPGFVETPMAASVREHYSDIWEVSTEEAFDRITARVP- 218 (257)
T ss_dssp ------CCTTCHHHHHHHHHHHHHHHHHHHHTTTSEEEEEEEEECSBCSHHHHHHHHHHHHHTTCCHHHHHHHHHTTST-
T ss_pred ------ccccchhHHHHHHHHHHHHHHHHHHhhhhCcEEEEEeeCCCCCHHHHHHHhhhhhhcccChHHHHHHHHhcCC-
Confidence 2234578999999999998887643 5799999999998543210 011222333333222
Q ss_pred EEecCCCceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCC
Q 047227 212 FIIGDGNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNM 260 (485)
Q Consensus 212 ~~~g~g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~ 260 (485)
..-+...+|+|.+++.++... ..-..|+.+.|.+|
T Consensus 219 --------lgR~~~pedia~~v~fL~S~~------s~~itG~~i~vDGG 253 (257)
T d2rhca1 219 --------IGRYVQPSEVAEMVAYLIGPG------AAAVTAQALNVCGG 253 (257)
T ss_dssp --------TSSCBCHHHHHHHHHHHTSGG------GTTCCSCEEEESTT
T ss_pred --------CCCCcCHHHHHHHHHHHhCch------hcCCcCceEEECcC
Confidence 223667999999998875311 22367889888765
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=99.69 E-value=1.8e-15 Score=142.01 Aligned_cols=224 Identities=18% Similarity=0.216 Sum_probs=156.4
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc
Q 047227 3 GEENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ 82 (485)
Q Consensus 3 ~~~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~ 82 (485)
...++|++|||||++-||.++++.|.++| ++|.+.+|....... ..........+.++.+|++|++++.++++
T Consensus 2 nrL~gKvalITGas~GIG~aia~~la~~G-a~V~i~~r~~~~~~~------~~~~l~~~~~~~~~~~Dv~~~~~v~~~~~ 74 (268)
T d2bgka1 2 NRLQDKVAIITGGAGGIGETTAKLFVRYG-AKVVIADIADDHGQK------VCNNIGSPDVISFVHCDVTKDEDVRNLVD 74 (268)
T ss_dssp CTTTTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHH------HHHHHCCTTTEEEEECCTTCHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEECCHHHHHH------HHHHhcCCCceEEEEccCCCHHHHHHHHH
Confidence 35678999999999999999999999999 699999986532111 11222234568889999999998888774
Q ss_pred -------CCCEEEEcCCCCC---------CCCchhhhHHHHHHHHHHHHHHHH----hcCCCEEEEecCccccccCCCCc
Q 047227 83 -------GAEVVFHMAAPNS---------SINNHKLHHSVNVEGTKNVIDACA----ELKVKRLIYTSSPSVVFDGVHGI 142 (485)
Q Consensus 83 -------~~d~Vih~aa~~~---------~~~~~~~~~~~nv~~t~~ll~a~~----~~~v~r~V~~SS~~vy~~~~~~~ 142 (485)
+.|++||+||... ..++++..+++|+.++..+.+++. +.+-.++|++||...+..+
T Consensus 75 ~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~g~ii~iss~~~~~~~---- 150 (268)
T d2bgka1 75 TTIAKHGKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMIPAKKGSIVFTASISSFTAG---- 150 (268)
T ss_dssp HHHHHHSCCCEEEECCCCCCSSCSSTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHGGGTCEEEEEECCGGGTCCC----
T ss_pred HHHHHcCCcceeccccccccCCCcccccCcHHHHHHHHHHhhcchhhhhhhhcchHhhcCCCCccccccccccccc----
Confidence 4899999999321 123567788999999888877654 3455689999987654210
Q ss_pred CCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhC---CCCceEEEEecCCcccCCCCCC----hHHHHHHHHcCCCeEEec
Q 047227 143 INGNEALPYPPKHNDFYSATKAEGEALVIKANG---TNGLLTCCIRPSSIFGPGDRLL----VPSLVAAARAGKSKFIIG 215 (485)
Q Consensus 143 ~~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~---~~g~~~~ilRp~~v~Gp~~~~~----~~~~~~~~~~g~~~~~~g 215 (485)
......|+.+|+..+.+.+.++. .+|+++.++.||.+-.|..... -...-........
T Consensus 151 ----------~~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~----- 215 (268)
T d2bgka1 151 ----------EGVSHVYTATKHAVLGLTTSLCTELGEYGIRVNCVSPYIVASPLLTDVFGVDSSRVEELAHQAAN----- 215 (268)
T ss_dssp ----------TTSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCSCCCCTTSSSCCHHHHHHHHHHTCS-----
T ss_pred ----------cccccccchhHHHHHhCHHHHHHHhChhCeEEEecCCCCccChHHhhhhcCCHHHHHHHHHhccc-----
Confidence 11234799999999999887764 3689999999999987653321 1112222222211
Q ss_pred CCCceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCC
Q 047227 216 DGNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNME 261 (485)
Q Consensus 216 ~g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~ 261 (485)
....+..++|+|++++.++... ..-..|+.+.|.+|-
T Consensus 216 ---~~gr~~~pedvA~~v~fL~S~~------s~~itGq~i~VDGG~ 252 (268)
T d2bgka1 216 ---LKGTLLRAEDVADAVAYLAGDE------SKYVSGLNLVIDGGY 252 (268)
T ss_dssp ---SCSCCCCHHHHHHHHHHHHSGG------GTTCCSCEEEESTTG
T ss_pred ---cCCCCcCHHHHHHHHHHHhChh------hCCccCceEEECcCc
Confidence 1123567899999999886421 223679999998864
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.69 E-value=1.6e-16 Score=148.17 Aligned_cols=221 Identities=15% Similarity=0.161 Sum_probs=153.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc---
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ--- 82 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 82 (485)
++|.+|||||++-||.++++.|.++| ++|.+.+|..........+ +.......++.++.+|++|++++.++++
T Consensus 2 ~GKvalITGas~GIG~aia~~la~~G-a~V~i~~r~~~~~~~~~~~---l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~ 77 (254)
T d2gdza1 2 NGKVALVTGAAQGIGRAFAEALLLKG-AKVALVDWNLEAGVQCKAA---LHEQFEPQKTLFIQCDVADQQQLRDTFRKVV 77 (254)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHH---HTTTSCGGGEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHH---HHHhcCCCcEEEEEeecCCHHHHHHHHHHHH
Confidence 47899999999999999999999999 6999999875422111010 1111223578899999999998887764
Q ss_pred ----CCCEEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHh----cC---CCEEEEecCccccccCCCCcCCCCCCCCC
Q 047227 83 ----GAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAE----LK---VKRLIYTSSPSVVFDGVHGIINGNEALPY 151 (485)
Q Consensus 83 ----~~d~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~----~~---v~r~V~~SS~~vy~~~~~~~~~~~e~~~~ 151 (485)
+.|++||+|+... ..+++..+++|+.++.++..++.. .+ -.++|++||...+.
T Consensus 78 ~~~G~iDilVnnAg~~~-~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~~~g~Iv~isS~~~~~--------------- 141 (254)
T d2gdza1 78 DHFGRLDILVNNAGVNN-EKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLAGLM--------------- 141 (254)
T ss_dssp HHHSCCCEEEECCCCCC-SSSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTS---------------
T ss_pred HHcCCcCeecccccccc-cccchheeeeehhhHHHHHHHHHHHHHHhhcCCCcEEEeeccHhhcc---------------
Confidence 4899999999543 356788899999988777666543 22 24799999976642
Q ss_pred CCCCCchHHHHHHHHHHHHHH--Hh---CCCCceEEEEecCCcccCCCCC------------ChHHHHHHHHcCCCeEEe
Q 047227 152 PPKHNDFYSATKAEGEALVIK--AN---GTNGLLTCCIRPSSIFGPGDRL------------LVPSLVAAARAGKSKFII 214 (485)
Q Consensus 152 ~~~~~~~Y~~sK~~~E~~~~~--~~---~~~g~~~~ilRp~~v~Gp~~~~------------~~~~~~~~~~~g~~~~~~ 214 (485)
+......|+.+|+..+.+.+. ++ ..+|+++.++.||.+--+.... ....+.....
T Consensus 142 ~~~~~~~Y~asKaal~~ltrs~ala~e~~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~p-------- 213 (254)
T d2gdza1 142 PVAQQPVYCASKHGIVGFTRSAALAANLMNSGVRLNAICPGFVNTAILESIEKEENMGQYIEYKDHIKDMIK-------- 213 (254)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEESCBSSHHHHGGGCHHHHGGGGGGHHHHHHHHH--------
T ss_pred CCCCccchHHHHHHHHHHHHHHHHHHHhcCCCEEEEEEEcCCCCChhhhhccccccccccHHHHHHHHhcCC--------
Confidence 233456899999999988763 22 3578999999999985331000 0111111111
Q ss_pred cCCCceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCCCccHHH
Q 047227 215 GDGNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMESIKFWE 267 (485)
Q Consensus 215 g~g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~~t~~e 267 (485)
...+...+|+|++++.++. .+...|+...|.++..+.+.|
T Consensus 214 -----~~r~~~pedvA~~v~fL~s--------~~~itG~~i~VdGG~~~~~~~ 253 (254)
T d2gdza1 214 -----YYGILDPPLIANGLITLIE--------DDALNGAIMKITTSKGIHFQD 253 (254)
T ss_dssp -----HHCCBCHHHHHHHHHHHHH--------CTTCSSCEEEEETTTEEEECC
T ss_pred -----CCCCcCHHHHHHHHHHHHc--------CCCCCCCEEEECCCCeeeccc
Confidence 1124568999999998876 223789999999887665443
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=99.68 E-value=5.1e-16 Score=144.95 Aligned_cols=219 Identities=15% Similarity=0.059 Sum_probs=153.8
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhh-cCCCeEEEEecCCCHHHHHHHhc-
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEAL-RSGRAHYVSFDLRHKAQVLQALQ- 82 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~- 82 (485)
.++|++|||||++-||+++++.|.++| ++|.+.+|+...... ...... ...++.++.+|++|++++.++++
T Consensus 6 L~GK~alITGas~GIG~aia~~la~~G-a~V~~~~r~~~~l~~------~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~ 78 (259)
T d2ae2a_ 6 LEGCTALVTGGSRGIGYGIVEELASLG-ASVYTCSRNQKELND------CLTQWRSKGFKVEASVCDLSSRSERQELMNT 78 (259)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTT-CEEEEEESCHHHHHH------HHHHHHHTTCEEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHH------HHHHHHhcCCCceEEEeeCCCHHHHHHHHHH
Confidence 468999999999999999999999999 699999986442111 111111 23567889999999988776652
Q ss_pred -------CCCEEEEcCCCC-------CCCCchhhhHHHHHHHHHHHHHHHH----hcCCCEEEEecCccccccCCCCcCC
Q 047227 83 -------GAEVVFHMAAPN-------SSINNHKLHHSVNVEGTKNVIDACA----ELKVKRLIYTSSPSVVFDGVHGIIN 144 (485)
Q Consensus 83 -------~~d~Vih~aa~~-------~~~~~~~~~~~~nv~~t~~ll~a~~----~~~v~r~V~~SS~~vy~~~~~~~~~ 144 (485)
..|++||+||.. .+.++++..+++|+.++..+.+++. +.+-.++|++||.....
T Consensus 79 ~~~~~~~~idilvnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~isS~~~~~-------- 150 (259)
T d2ae2a_ 79 VANHFHGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKASERGNVVFISSVSGAL-------- 150 (259)
T ss_dssp HHHHTTTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTSSEEEEEECCGGGTS--------
T ss_pred HHHHhCCCceEEEECCceeccCccccCCHHHHHHHHhcccceeEEEEeeccchhhhhccccccccccccccc--------
Confidence 379999999922 2334677899999999988877654 34556999999976542
Q ss_pred CCCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCC-----CChHHHHHHHHcCCCeEEecC
Q 047227 145 GNEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDR-----LLVPSLVAAARAGKSKFIIGD 216 (485)
Q Consensus 145 ~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~-----~~~~~~~~~~~~g~~~~~~g~ 216 (485)
+......|+.+|+..+.+.+.++.+ +|+++.++.||.+-.+... ...........+..+
T Consensus 151 -------~~~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~p------ 217 (259)
T d2ae2a_ 151 -------AVPYEAVYGATKGAMDQLTRCLAFEWAKDNIRVNGVGPGVIATSLVEMTIQDPEQKENLNKLIDRCA------ 217 (259)
T ss_dssp -------CCTTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCSHHHHHHTTSHHHHHHHHHHHHTST------
T ss_pred -------ccccccchHHHHHHHHHHHHHHHHHhCcCceEEEEeeeCcccCHHHHhhhhchhhHHHHHHHHhcCC------
Confidence 1234578999999999998887643 5899999999998644210 011122333333322
Q ss_pred CCceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCC
Q 047227 217 GNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNM 260 (485)
Q Consensus 217 g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~ 260 (485)
..-+..++|+|++++.++... ..-..|+.+.|.+|
T Consensus 218 ---l~R~g~pedvA~~v~fL~S~~------s~~itG~~i~VDGG 252 (259)
T d2ae2a_ 218 ---LRRMGEPKELAAMVAFLCFPA------ASYVTGQIIYVDGG 252 (259)
T ss_dssp ---TCSCBCHHHHHHHHHHHHSGG------GTTCCSCEEEESTT
T ss_pred ---CCCCcCHHHHHHHHHHHhCch------hCCCcCcEEEECCC
Confidence 123566899999998875421 22267889888776
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=99.68 E-value=1.5e-16 Score=148.85 Aligned_cols=230 Identities=17% Similarity=0.133 Sum_probs=156.7
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc-
Q 047227 4 EENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ- 82 (485)
Q Consensus 4 ~~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~- 82 (485)
+.++|++|||||++-||.++++.|.++| ++|.+.+|+.....+..++ +.. ....++..+.+|++|++++.++++
T Consensus 6 ~l~gK~alITGas~GIG~aia~~la~~G-a~V~i~~r~~~~~~~~~~~---~~~-~~g~~~~~~~~Dv~~~~~v~~~~~~ 80 (260)
T d1h5qa_ 6 SFVNKTIIVTGGNRGIGLAFTRAVAAAG-ANVAVIYRSAADAVEVTEK---VGK-EFGVKTKAYQCDVSNTDIVTKTIQQ 80 (260)
T ss_dssp CCTTEEEEEETTTSHHHHHHHHHHHHTT-EEEEEEESSCTTHHHHHHH---HHH-HHTCCEEEEECCTTCHHHHHHHHHH
T ss_pred cCCCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHH---HHH-HhCCceEEEEccCCCHHHHHHHHHH
Confidence 4568999999999999999999999999 6999999875422111111 111 114578999999999998887764
Q ss_pred ------CCCEEEEcCCCC-------CCCCchhhhHHHHHHHHHHHHHHHHh----c-CCCEEEEecCccccccCCCCcCC
Q 047227 83 ------GAEVVFHMAAPN-------SSINNHKLHHSVNVEGTKNVIDACAE----L-KVKRLIYTSSPSVVFDGVHGIIN 144 (485)
Q Consensus 83 ------~~d~Vih~aa~~-------~~~~~~~~~~~~nv~~t~~ll~a~~~----~-~v~r~V~~SS~~vy~~~~~~~~~ 144 (485)
+.|++||+|+.. .+.++++..+++|+.++.++.+++.. . +-.+++..||..........
T Consensus 81 ~~~~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~~g~i~~~~s~~~~~~~~~~--- 157 (260)
T d1h5qa_ 81 IDADLGPISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFNTCRAVAKLWLQKQQKGSIVVTSSMSSQIINQSS--- 157 (260)
T ss_dssp HHHHSCSEEEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCCEEE---
T ss_pred HHHHhCCCcEecccccccccCCHHHhccccccccccccccchhhhhhhhcccccccccceEEEEeeccccccccccc---
Confidence 489999999932 23346778999999998888766543 2 34466666665443111000
Q ss_pred CCCCCCCCCCCCchHHHHHHHHHHHHHHHhC---CCCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCcee
Q 047227 145 GNEALPYPPKHNDFYSATKAEGEALVIKANG---TNGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVY 221 (485)
Q Consensus 145 ~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~---~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~~ 221 (485)
..+......|+.+|+..+.+.+.++. .+|+++.++.||.+-.+.....-+.......+..+. .
T Consensus 158 -----~~~~~~~~~Y~asKaal~~lt~~lA~el~~~gIrvN~I~PG~i~T~~~~~~~~~~~~~~~~~~pl---------~ 223 (260)
T d1h5qa_ 158 -----LNGSLTQVFYNSSKAACSNLVKGLAAEWASAGIRVNALSPGYVNTDQTAHMDKKIRDHQASNIPL---------N 223 (260)
T ss_dssp -----TTEECSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCGGGGGSCHHHHHHHHHTCTT---------S
T ss_pred -----cccCccccchhhhhhhHHHHHHHHHHHhchhCeEEeecCCCcccCcchhccCHHHHHHHHhcCCC---------C
Confidence 00123456899999999999887664 468999999999986654333334444444443322 2
Q ss_pred ecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCC
Q 047227 222 DFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNME 261 (485)
Q Consensus 222 ~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~ 261 (485)
-+...+|+|.+++.++... ..-..|+.+.|.+|.
T Consensus 224 R~g~pedvA~~v~fL~S~~------s~~itG~~i~VDGG~ 257 (260)
T d1h5qa_ 224 RFAQPEEMTGQAILLLSDH------ATYMTGGEYFIDGGQ 257 (260)
T ss_dssp SCBCGGGGHHHHHHHHSGG------GTTCCSCEEEECTTG
T ss_pred CCcCHHHHHHHHHHHhcch------hCCCcCceEEECCCe
Confidence 2556899999988875321 122678999888764
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=99.68 E-value=6.9e-16 Score=143.90 Aligned_cols=219 Identities=14% Similarity=0.049 Sum_probs=153.9
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhh-cCCCeEEEEecCCCHHHHHHHhc-
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEAL-RSGRAHYVSFDLRHKAQVLQALQ- 82 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~- 82 (485)
.++|++|||||++-||+++++.|+++| ++|.+.+|+....... .+... ....+.++.+|++|.++++++++
T Consensus 4 L~gK~alITGas~GIG~aia~~la~~G-~~V~i~~r~~~~l~~~------~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~ 76 (258)
T d1ae1a_ 4 LKGTTALVTGGSKGIGYAIVEELAGLG-ARVYTCSRNEKELDEC------LEIWREKGLNVEGSVCDLLSRTERDKLMQT 76 (258)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHH------HHHHHHTTCCEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHH------HHHHHhcCCCceEEEeecCCHHHHHHHHHH
Confidence 468999999999999999999999999 6999999875421111 11111 23567889999999998877653
Q ss_pred ------C-CCEEEEcCCCC-------CCCCchhhhHHHHHHHHHHHHHHHH----hcCCCEEEEecCccccccCCCCcCC
Q 047227 83 ------G-AEVVFHMAAPN-------SSINNHKLHHSVNVEGTKNVIDACA----ELKVKRLIYTSSPSVVFDGVHGIIN 144 (485)
Q Consensus 83 ------~-~d~Vih~aa~~-------~~~~~~~~~~~~nv~~t~~ll~a~~----~~~v~r~V~~SS~~vy~~~~~~~~~ 144 (485)
+ .|+++|+|+.. .+.+++...+++|+.++..+.+++. +.+..++|++||.....
T Consensus 77 ~~~~~~g~idilinnag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~~~g~ii~isS~~~~~-------- 148 (258)
T d1ae1a_ 77 VAHVFDGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKASQNGNVIFLSSIAGFS-------- 148 (258)
T ss_dssp HHHHTTSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSEEEEEECCGGGTS--------
T ss_pred HHHHhCCCcEEEeccccccccCccccCCHHHHhhhhhhcccccccccccccccccccccccccccccccccc--------
Confidence 3 79999999922 2445778899999999988877655 34567999999976642
Q ss_pred CCCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCC------hHHHHHHHHcCCCeEEec
Q 047227 145 GNEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLL------VPSLVAAARAGKSKFIIG 215 (485)
Q Consensus 145 ~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~------~~~~~~~~~~g~~~~~~g 215 (485)
+......|+.+|...+.+.+.++.+ +|+++.++.||.+..+..... .......+.+..+
T Consensus 149 -------~~~~~~~Y~~sK~al~~lt~~lA~el~~~gIrvN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~p----- 216 (258)
T d1ae1a_ 149 -------ALPSVSLYSASKGAINQMTKSLACEWAKDNIRVNSVAPGVILTPLVETAIKKNPHQKEEIDNFIVKTP----- 216 (258)
T ss_dssp -------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBC-------------CHHHHHHHHHHST-----
T ss_pred -------ccccchhHHHHHHHHHHHHHHHHHhcCcCcEEEEEEeeCcccCcchhhhhhhhhhhHHHHHHHHhcCC-----
Confidence 1234568999999999998877643 689999999999986643211 1223333332222
Q ss_pred CCCceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCC
Q 047227 216 DGNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNM 260 (485)
Q Consensus 216 ~g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~ 260 (485)
..-+...+|+|.++..++... ..-..|+.+.|.+|
T Consensus 217 ----lgR~~~pediA~~v~fL~S~~------s~~itG~~i~vDGG 251 (258)
T d1ae1a_ 217 ----MGRAGKPQEVSALIAFLCFPA------ASYITGQIIWADGG 251 (258)
T ss_dssp ----TCSCBCHHHHHHHHHHHHSGG------GTTCCSCEEEESTT
T ss_pred ----CCCCcCHHHHHHHHHHHhChh------hCCCcCcEEEeCCC
Confidence 123677999999999886321 12267888888776
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=99.68 E-value=4.5e-16 Score=145.50 Aligned_cols=218 Identities=14% Similarity=0.114 Sum_probs=153.3
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhh--cCCCeEEEEecCCCHHHHHHHhc
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEAL--RSGRAHYVSFDLRHKAQVLQALQ 82 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~Dl~d~~~l~~~~~ 82 (485)
.++|++|||||++-||+++++.|.++| ++|.+.+|+...... ....+ ...++..+.+|++|++++.++++
T Consensus 3 L~gK~alITGas~GIG~aia~~la~~G-a~V~~~~r~~~~l~~-------~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~ 74 (260)
T d1zema1 3 FNGKVCLVTGAGGNIGLATALRLAEEG-TAIALLDMNREALEK-------AEASVREKGVEARSYVCDVTSEEAVIGTVD 74 (260)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHH-------HHHHHHTTTSCEEEEECCTTCHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHH-------HHHHHHhcCCcEEEEEccCCCHHHHHHHHH
Confidence 468999999999999999999999999 699999986532111 11111 13478899999999988877764
Q ss_pred -------CCCEEEEcCCCCC--------CCCchhhhHHHHHHHHHHHHHHHHh----cCCCEEEEecCccccccCCCCcC
Q 047227 83 -------GAEVVFHMAAPNS--------SINNHKLHHSVNVEGTKNVIDACAE----LKVKRLIYTSSPSVVFDGVHGII 143 (485)
Q Consensus 83 -------~~d~Vih~aa~~~--------~~~~~~~~~~~nv~~t~~ll~a~~~----~~v~r~V~~SS~~vy~~~~~~~~ 143 (485)
+.|++||+||... +.++++..+++|+.++..+.+++.. .+-.++|++||...+.
T Consensus 75 ~~~~~~g~iDilVnnaG~~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~m~~~~~G~II~isS~~~~~------- 147 (260)
T d1zema1 75 SVVRDFGKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQNYGRIVNTASMAGVK------- 147 (260)
T ss_dssp HHHHHHSCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHS-------
T ss_pred HHHHHhCCCCeehhhhccccccCccccccHHHHHhhccccccccccchhhHHhhhhhhcCCCCCeeechhhcc-------
Confidence 4899999999321 2335778899999999888777543 3456999999977652
Q ss_pred CCCCCCCCCCCCCchHHHHHHHHHHHHHHHhC---CCCceEEEEecCCcccCCCC----------------CChHHHHHH
Q 047227 144 NGNEALPYPPKHNDFYSATKAEGEALVIKANG---TNGLLTCCIRPSSIFGPGDR----------------LLVPSLVAA 204 (485)
Q Consensus 144 ~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~---~~g~~~~ilRp~~v~Gp~~~----------------~~~~~~~~~ 204 (485)
+......|+.+|+..+.+.+.++. .+|+++.++.||.|-.+... ..-..+...
T Consensus 148 --------~~~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (260)
T d1zema1 148 --------GPPNMAAYGTSKGAIIALTETAALDLAPYNIRVNAISPGYMGPGFMWERQVELQAKVGSQYFSTDPKVVAQQ 219 (260)
T ss_dssp --------CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSSHHHHHHHHHHHHHTCTTSCSSHHHHHHH
T ss_pred --------CCcchHHHHHHHHHHHHHHHHHHHHhhhhCCEEEEeccCcccCcchhhcchhhhhhhcccccccCHHHHHHH
Confidence 123456899999999999887764 35899999999998654210 011122222
Q ss_pred HHcCCCeEEecCCCceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCC
Q 047227 205 ARAGKSKFIIGDGNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNM 260 (485)
Q Consensus 205 ~~~g~~~~~~g~g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~ 260 (485)
+....| ..-+..++|+|.+++.++... ..-..|+.+.|.+|
T Consensus 220 ~~~~~P---------l~R~g~pedvA~~v~fL~S~~------s~~itG~~i~VDGG 260 (260)
T d1zema1 220 MIGSVP---------MRRYGDINEIPGVVAFLLGDD------SSFMTGVNLPIAGG 260 (260)
T ss_dssp HHHTST---------TSSCBCGGGSHHHHHHHHSGG------GTTCCSCEEEESCC
T ss_pred HHhcCC---------CCCCcCHHHHHHHHHHHhCch------hcCccCCeEEeCCC
Confidence 222222 123556899999998876421 12267888887653
|
| >d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=99.67 E-value=3e-16 Score=145.13 Aligned_cols=217 Identities=18% Similarity=0.087 Sum_probs=153.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhh--cCCCeEEEEecCCCHHHHHHHhc---
Q 047227 8 RLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEAL--RSGRAHYVSFDLRHKAQVLQALQ--- 82 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~Dl~d~~~l~~~~~--- 82 (485)
+.+|||||++-||+++++.|.++| ++|.+.++......+. +.+.+ ...++..+.+|++|++++.++++
T Consensus 2 pV~lITGas~GIG~a~a~~la~~G-a~V~i~~~~~~~~~~~------~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~ 74 (244)
T d1edoa_ 2 PVVVVTGASRGIGKAIALSLGKAG-CKVLVNYARSAKAAEE------VSKQIEAYGGQAITFGGDVSKEADVEAMMKTAI 74 (244)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTT-CEEEEEESSCHHHHHH------HHHHHHHHTCEEEEEECCTTSHHHHHHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCCCHHHHHH------HHHHHHHcCCcEEEEeCCCCCHHHHHHHHHHHH
Confidence 479999999999999999999999 6888766543211110 11111 23578899999999998887764
Q ss_pred ----CCCEEEEcCCCC-------CCCCchhhhHHHHHHHHHHHHHHHH----hcCCCEEEEecCccccccCCCCcCCCCC
Q 047227 83 ----GAEVVFHMAAPN-------SSINNHKLHHSVNVEGTKNVIDACA----ELKVKRLIYTSSPSVVFDGVHGIINGNE 147 (485)
Q Consensus 83 ----~~d~Vih~aa~~-------~~~~~~~~~~~~nv~~t~~ll~a~~----~~~v~r~V~~SS~~vy~~~~~~~~~~~e 147 (485)
+.|++||+|+.. .+.++++..+++|+.++.++.+++. +.+-.++|++||...+.
T Consensus 75 ~~~g~iDiLVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~IVnisS~~~~~----------- 143 (244)
T d1edoa_ 75 DAWGTIDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKRKGRIINIASVVGLI----------- 143 (244)
T ss_dssp HHSSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHHH-----------
T ss_pred HHcCCCCccccccccccccchhccchHHHHHHHhhhhhhHHHHHHHHHHHHHHcCCcEEEEEcChhhcC-----------
Confidence 489999999932 2345678899999999888877654 44567999999977652
Q ss_pred CCCCCCCCCchHHHHHHHHHHHHHHHhC---CCCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCceeecc
Q 047227 148 ALPYPPKHNDFYSATKAEGEALVIKANG---TNGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFT 224 (485)
Q Consensus 148 ~~~~~~~~~~~Y~~sK~~~E~~~~~~~~---~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i 224 (485)
+......|+.+|...+.+.+.++. .+|+++.++.||.+-.+......+.......+..+. .-+.
T Consensus 144 ----~~~~~~~Y~asKaal~~ltk~lA~el~~~gIrvN~I~PG~i~T~~~~~~~~~~~~~~~~~~pl---------~R~~ 210 (244)
T d1edoa_ 144 ----GNIGQANYAAAKAGVIGFSKTAAREGASRNINVNVVCPGFIASDMTAKLGEDMEKKILGTIPL---------GRTG 210 (244)
T ss_dssp ----CCTTCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCSHHHHTTCHHHHHHHHTSCTT---------CSCB
T ss_pred ----CCCCCHHHHHHHHHHHHChHHHHHHHhhhCcEEEEEecceeccHHHHHhhHHHHHHHHhcCCC---------CCCc
Confidence 123457899999999999887764 368999999999986442222233444444433321 2356
Q ss_pred cHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCC
Q 047227 225 YVANVAHAHICAERALASEVTVAEKAAGQAYFVTNM 260 (485)
Q Consensus 225 ~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~ 260 (485)
..+|+|+++..+..... ..-..|+.+.+.+|
T Consensus 211 ~p~dvA~~v~fLa~S~~-----a~~itG~~i~vdGG 241 (244)
T d1edoa_ 211 QPENVAGLVEFLALSPA-----ASYITGQAFTIDGG 241 (244)
T ss_dssp CHHHHHHHHHHHHHCSG-----GGGCCSCEEEESTT
T ss_pred CHHHHHHHHHHHHCCch-----hcCCcCCeEEeCCC
Confidence 78999999987742111 22367888888776
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.67 E-value=3.4e-16 Score=146.10 Aligned_cols=220 Identities=16% Similarity=0.150 Sum_probs=143.4
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhh-hcCCCeEEEEecCCCHHHHHHHhc-
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEA-LRSGRAHYVSFDLRHKAQVLQALQ- 82 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~l~~~~~- 82 (485)
.++|++|||||++-||.++++.|.++| ++|.+.+|+....... .... ....++..+.+|++|++++.++++
T Consensus 6 LkgK~alVTGas~GIG~aiA~~la~~G-a~V~~~~r~~~~l~~~------~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~ 78 (259)
T d1xq1a_ 6 LKAKTVLVTGGTKGIGHAIVEEFAGFG-AVIHTCARNEYELNEC------LSKWQKKGFQVTGSVCDASLRPEREKLMQT 78 (259)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHH------HHHHHHTTCCEEEEECCTTSHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHH------HHHHHhcCCceEEEeccCCCHHHHHHHHHH
Confidence 468999999999999999999999999 6999999875421111 1111 123578999999999988776652
Q ss_pred ------C-CCEEEEcCCC-------CCCCCchhhhHHHHHHHHHHHHHHHH----hcCCCEEEEecCccccccCCCCcCC
Q 047227 83 ------G-AEVVFHMAAP-------NSSINNHKLHHSVNVEGTKNVIDACA----ELKVKRLIYTSSPSVVFDGVHGIIN 144 (485)
Q Consensus 83 ------~-~d~Vih~aa~-------~~~~~~~~~~~~~nv~~t~~ll~a~~----~~~v~r~V~~SS~~vy~~~~~~~~~ 144 (485)
+ .|++||+||. ..+.++++..+++|+.++..+.+++. +.+-.++|++||.....
T Consensus 79 ~~~~~~g~idilvnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Iv~isS~~~~~-------- 150 (259)
T d1xq1a_ 79 VSSMFGGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKASGCGNIIFMSSIAGVV-------- 150 (259)
T ss_dssp HHHHHTTCCSEEEEECCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCEEEEEC--------------
T ss_pred HHHHhCCCcccccccccccCCCchhhCCHHHHHHHHHHHhhhheeeehhhhhcccccccccccccccccccc--------
Confidence 4 8999999992 22445778899999999888877654 44567999999976542
Q ss_pred CCCCCCCCCCCCchHHHHHHHHHHHHHHHhC---CCCceEEEEecCCcccCCCCCChHH-HHHHHHcCCCeEEecCCCce
Q 047227 145 GNEALPYPPKHNDFYSATKAEGEALVIKANG---TNGLLTCCIRPSSIFGPGDRLLVPS-LVAAARAGKSKFIIGDGNNV 220 (485)
Q Consensus 145 ~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~---~~g~~~~ilRp~~v~Gp~~~~~~~~-~~~~~~~g~~~~~~g~g~~~ 220 (485)
+......|+.+|...+.+.+.++. .+|+++.++.||.+-.|......+. ......+. ...
T Consensus 151 -------~~~~~~~Y~asKaal~~lt~~lA~e~~~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~---------~pl 214 (259)
T d1xq1a_ 151 -------SASVGSIYSATKGALNQLARNLACEWASDGIRANAVAPAVIATPLAEAVYDDEFKKVVISR---------KPL 214 (259)
T ss_dssp -----------CCHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEECCSCC-------------------------------
T ss_pred -------cccccccccccccchhhhhHHHHHHhcccCeEEEEeccCcccCHHhhhhchHHHHHHHHhC---------CCC
Confidence 123456899999999998887664 3689999999999876532221111 11111111 122
Q ss_pred eecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCC
Q 047227 221 YDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNME 261 (485)
Q Consensus 221 ~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~ 261 (485)
.-+...+|+|.+++.++... ..-..|+.+.|.+|.
T Consensus 215 ~R~~~pedvA~~v~fL~S~~------s~~iTG~~i~vDGG~ 249 (259)
T d1xq1a_ 215 GRFGEPEEVSSLVAFLCMPA------ASYITGQTICVDGGL 249 (259)
T ss_dssp ---CCGGGGHHHHHHHTSGG------GTTCCSCEEECCCCE
T ss_pred CCCcCHHHHHHHHHHHhCch------hcCCcCcEEEeCCCE
Confidence 23567899999998775311 223678888887763
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.67 E-value=2.9e-16 Score=149.45 Aligned_cols=222 Identities=15% Similarity=0.095 Sum_probs=153.6
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhh---hcCCCeEEEEecCCCHHHHHHHh
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEA---LRSGRAHYVSFDLRHKAQVLQAL 81 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~Dl~d~~~l~~~~ 81 (485)
.++|++|||||++-||.++++.|.++| ++|.+.+|.........++ +... ....++..+.+|++|++++.+++
T Consensus 10 L~gKvalITGas~GIG~aia~~la~~G-a~Vvi~~r~~~~l~~~~~e---l~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~ 85 (297)
T d1yxma1 10 LQGQVAIVTGGATGIGKAIVKELLELG-SNVVIASRKLERLKSAADE---LQANLPPTKQARVIPIQCNIRNEEEVNNLV 85 (297)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHH---HHHTSCTTCCCCEEEEECCTTCHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHH---HHhhhccccCceEEEEeccCCCHHHHHHHH
Confidence 578999999999999999999999999 6999999875422111111 1111 12357889999999999888776
Q ss_pred c-------CCCEEEEcCCCC-------CCCCchhhhHHHHHHHHHHHHHHHHh----cCCCEEEEecCccccccCCCCcC
Q 047227 82 Q-------GAEVVFHMAAPN-------SSINNHKLHHSVNVEGTKNVIDACAE----LKVKRLIYTSSPSVVFDGVHGII 143 (485)
Q Consensus 82 ~-------~~d~Vih~aa~~-------~~~~~~~~~~~~nv~~t~~ll~a~~~----~~v~r~V~~SS~~vy~~~~~~~~ 143 (485)
+ +.|++||+|+.. ...++++..+++|+.++..+.+++.. .+-.++|.+||....+
T Consensus 86 ~~~~~~~G~iDiLVnnAg~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~~~g~Ii~~ss~~~~~------- 158 (297)
T d1yxma1 86 KSTLDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMKEHGGSIVNIIVPTKAG------- 158 (297)
T ss_dssp HHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHCEEEEEECCCCTTC-------
T ss_pred HHHHHHhCCeEEEEeeccccccCchhhhhhhhhhhhhcccccchhhHHHHHHHhhcccccccccccccccccc-------
Confidence 4 489999999922 23346778999999999998887654 3345788887643321
Q ss_pred CCCCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCChH----HHHHHHHcCCCeEEecC
Q 047227 144 NGNEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLLVP----SLVAAARAGKSKFIIGD 216 (485)
Q Consensus 144 ~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~~~----~~~~~~~~g~~~~~~g~ 216 (485)
......|+.+|+..+.+.+.++.+ +|+++.++.||.+..+....... .+.....+..
T Consensus 159 ---------~~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~------- 222 (297)
T d1yxma1 159 ---------FPLAVHSGAARAGVYNLTKSLALEWACSGIRINCVAPGVIYSQTAVENYGSWGQSFFEGSFQKI------- 222 (297)
T ss_dssp ---------CTTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCCTGGGTTSGGGGGGGGTTGGGGS-------
T ss_pred ---------ccccccchhHHHHHHHHHHHHHHHhcccCceEEEeeeCcCcCcchhhhccccCHHHHHHHHhcC-------
Confidence 224568999999999998887643 58999999999987653211111 1111111111
Q ss_pred CCceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCC
Q 047227 217 GNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNME 261 (485)
Q Consensus 217 g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~ 261 (485)
...-+...+|+|.+++.++... ..-..|+.+.|.+|.
T Consensus 223 --plgR~g~pedvA~~v~fL~Sd~------s~~iTG~~i~VDGG~ 259 (297)
T d1yxma1 223 --PAKRIGVPEEVSSVVCFLLSPA------ASFITGQSVDVDGGR 259 (297)
T ss_dssp --TTSSCBCTHHHHHHHHHHHSGG------GTTCCSCEEEESTTG
T ss_pred --CCCCCcCHHHHHHHHHHHhCch------hcCcCCcEEEeCcCh
Confidence 1223566899999999886421 223689999998874
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Probab=99.67 E-value=3.6e-16 Score=144.37 Aligned_cols=218 Identities=20% Similarity=0.118 Sum_probs=155.4
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc--
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ-- 82 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 82 (485)
.++|++|||||++-||..+++.|.++| ++|.+.+|+...... ....+ ..++.++++|++|++++.++++
T Consensus 3 l~gK~alItGas~GIG~aia~~l~~~G-~~V~~~~r~~~~~~~-------~~~~~-~~~~~~~~~Dls~~~~i~~~~~~i 73 (241)
T d2a4ka1 3 LSGKTILVTGAASGIGRAALDLFAREG-ASLVAVDREERLLAE-------AVAAL-EAEAIAVVADVSDPKAVEAVFAEA 73 (241)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHH-------HHHTC-CSSEEEEECCTTSHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHH-------HHHHc-CCceEEEEecCCCHHHHHHHHHHH
Confidence 468999999999999999999999999 699999987542111 11111 3578899999999998877764
Q ss_pred -----CCCEEEEcCCC-------CCCCCchhhhHHHHHHHHHHHHHHHHhcC--CCEEEEecCccccccCCCCcCCCCCC
Q 047227 83 -----GAEVVFHMAAP-------NSSINNHKLHHSVNVEGTKNVIDACAELK--VKRLIYTSSPSVVFDGVHGIINGNEA 148 (485)
Q Consensus 83 -----~~d~Vih~aa~-------~~~~~~~~~~~~~nv~~t~~ll~a~~~~~--v~r~V~~SS~~vy~~~~~~~~~~~e~ 148 (485)
+.|++||+|+. ..+.+++...+++|+.++..+.+++...- -+.++.+||.+...
T Consensus 74 ~~~~g~iDiLinnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~k~~~~~~~~~~~i~~~ss~a~~~------------ 141 (241)
T d2a4ka1 74 LEEFGRLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGSVAGLG------------ 141 (241)
T ss_dssp HHHHSCCCEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECCCTTCC------------
T ss_pred HHHhCCccEeccccccccccchhhhhccccccccccccccccccccccccccccccceeecccccccc------------
Confidence 48999999992 12334677899999999999988876543 34566666543321
Q ss_pred CCCCCCCCchHHHHHHHHHHHHHHHhC---CCCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCceeeccc
Q 047227 149 LPYPPKHNDFYSATKAEGEALVIKANG---TNGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFTY 225 (485)
Q Consensus 149 ~~~~~~~~~~Y~~sK~~~E~~~~~~~~---~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~ 225 (485)
......|+.+|...|.+.+.++. .+|+++.++.||.+-.+......+.......+..+. .-+..
T Consensus 142 ----~~~~~~Y~~sK~al~~lt~~lA~el~~~gIrvN~I~PG~v~T~~~~~~~~~~~~~~~~~~p~---------~r~~~ 208 (241)
T d2a4ka1 142 ----AFGLAHYAAGKLGVVGLARTLALELARKGVRVNVLLPGLIQTPMTAGLPPWAWEQEVGASPL---------GRAGR 208 (241)
T ss_dssp ----HHHHHHHHHCSSHHHHHHHHHHHHHTTTTCEEEEEEECSBCCGGGTTSCHHHHHHHHHTSTT---------CSCBC
T ss_pred ----ccCccccchhhHHHHHHHHHHHHHHhHhCCEEeeeccCcCCCHHHHhhhHhHHHHHHhCCCC---------CCCcC
Confidence 12345799999999999988764 467999999999986553333334444444443322 23667
Q ss_pred HHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCCC
Q 047227 226 VANVAHAHICAERALASEVTVAEKAAGQAYFVTNMES 262 (485)
Q Consensus 226 v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~ 262 (485)
++|+|+++..++... ..-..|+.+.+.+|..
T Consensus 209 p~dva~~v~fL~S~~------s~~itG~~i~vDGG~s 239 (241)
T d2a4ka1 209 PEEVAQAALFLLSEE------SAYITGQALYVDGGRS 239 (241)
T ss_dssp HHHHHHHHHHHHSGG------GTTCCSCEEEESTTTT
T ss_pred HHHHHHHHHHHhcch------hCCCcCceEEeCCCcc
Confidence 999999999886421 2226788888887653
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=99.66 E-value=8.8e-16 Score=143.10 Aligned_cols=222 Identities=20% Similarity=0.177 Sum_probs=150.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhh-cCCCeEEEEecCCCHHHHHHHhc----
Q 047227 8 RLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEAL-RSGRAHYVSFDLRHKAQVLQALQ---- 82 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~---- 82 (485)
|.+|||||++-||+++++.|.++| ++|.+.+|+....... ..... ...++..+.+|++|++++.++++
T Consensus 2 KValITGas~GIG~aia~~la~~G-a~V~~~~r~~~~l~~~------~~~i~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~ 74 (255)
T d1gega_ 2 KVALVTGAGQGIGKAIALRLVKDG-FAVAIADYNDATAKAV------ASEINQAGGHAVAVKVDVSDRDQVFAAVEQARK 74 (255)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHH------HHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CEEEEcCCccHHHHHHHHHHHHCC-CEEEEEECCHHHHHHH------HHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHH
Confidence 456999999999999999999999 6999999875422111 11111 13578899999999998887764
Q ss_pred ---CCCEEEEcCCCC-------CCCCchhhhHHHHHHHHHHHHHHHH----hcC-CCEEEEecCccccccCCCCcCCCCC
Q 047227 83 ---GAEVVFHMAAPN-------SSINNHKLHHSVNVEGTKNVIDACA----ELK-VKRLIYTSSPSVVFDGVHGIINGNE 147 (485)
Q Consensus 83 ---~~d~Vih~aa~~-------~~~~~~~~~~~~nv~~t~~ll~a~~----~~~-v~r~V~~SS~~vy~~~~~~~~~~~e 147 (485)
+.|++||+||.. .+.++++..+++|+.++.++.+++. +.+ -.++|++||...+.
T Consensus 75 ~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~~g~Iv~isS~~~~~----------- 143 (255)
T d1gega_ 75 TLGGFDVIVNNAGVAPSTPIESITPEIVDKVYNINVKGVIWGIQAAVEAFKKEGHGGKIINACSQAGHV----------- 143 (255)
T ss_dssp HTTCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTS-----------
T ss_pred HhCCccEEEecccccccCcHHHhhhhhhhhhhhhcccchhhhhhhhcchhhhhccccccccccchhhcc-----------
Confidence 489999999922 2334677899999999999887754 333 45799999876542
Q ss_pred CCCCCCCCCchHHHHHHHHHHHHHHHhC---CCCceEEEEecCCcccCCCCCChHHHHHHHH--cCCCeE----EecCCC
Q 047227 148 ALPYPPKHNDFYSATKAEGEALVIKANG---TNGLLTCCIRPSSIFGPGDRLLVPSLVAAAR--AGKSKF----IIGDGN 218 (485)
Q Consensus 148 ~~~~~~~~~~~Y~~sK~~~E~~~~~~~~---~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~--~g~~~~----~~g~g~ 218 (485)
+......|+.+|+..+.+.+.++. .+|+++.++.||.+-.|. ...+..... .+.... -.....
T Consensus 144 ----~~~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (255)
T d1gega_ 144 ----GNPELAVYSSSKFAVRGLTQTAARDLAPLGITVNGYCPGIVKTPM----WAEIDRQVSEAAGKPLGYGTAEFAKRI 215 (255)
T ss_dssp ----CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSHH----HHHHHHHHHHHHTCCTTHHHHHHHTTC
T ss_pred ----cCcccccchhCHHHHHhhHHHHHHHhhhhCcEEEEEecCcccChH----HhhhhhhhHhhhcccchhHHHHHHhcC
Confidence 233557899999999999887763 468999999999985432 111111110 000000 000111
Q ss_pred ceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCC
Q 047227 219 NVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNME 261 (485)
Q Consensus 219 ~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~ 261 (485)
+..-+...+|+|++++.++... ..-..|+.+.+.+|-
T Consensus 216 pl~R~~~peevA~~v~fL~S~~------a~~itG~~i~vDGG~ 252 (255)
T d1gega_ 216 TLGRLSEPEDVAACVSYLASPD------SDYMTGQSLLIDGGM 252 (255)
T ss_dssp TTCSCBCHHHHHHHHHHHHSGG------GTTCCSCEEEESSSS
T ss_pred CCCCCcCHHHHHHHHHHHhCch------hCCccCcEEEecCCE
Confidence 2233667999999998875421 222678999887764
|
| >d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermotoga maritima [TaxId: 2336]
Probab=99.66 E-value=1.8e-15 Score=139.10 Aligned_cols=210 Identities=13% Similarity=0.110 Sum_probs=149.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCC-HHHHHHHhcCC
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRH-KAQVLQALQGA 84 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d-~~~l~~~~~~~ 84 (485)
++|++|||||++-||+++++.|.++| ++|.+.+|+.. .++..+.+++.+|+++ .+.+.+.+.+.
T Consensus 3 kgK~~lVTGas~GIG~aia~~l~~~G-a~V~~~~r~~~--------------~l~~~~~~~~~~Dv~~~~~~~~~~~g~i 67 (234)
T d1o5ia_ 3 RDKGVLVLAASRGIGRAVADVLSQEG-AEVTICARNEE--------------LLKRSGHRYVVCDLRKDLDLLFEKVKEV 67 (234)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTT-CEEEEEESCHH--------------HHHHTCSEEEECCTTTCHHHHHHHSCCC
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEECCHH--------------HHHhcCCcEEEcchHHHHHHHHHHhCCC
Confidence 57999999999999999999999999 69999988643 1223456788999986 35556666679
Q ss_pred CEEEEcCCCC-------CCCCchhhhHHHHHHHHHHHHHHH----HhcCCCEEEEecCccccccCCCCcCCCCCCCCCCC
Q 047227 85 EVVFHMAAPN-------SSINNHKLHHSVNVEGTKNVIDAC----AELKVKRLIYTSSPSVVFDGVHGIINGNEALPYPP 153 (485)
Q Consensus 85 d~Vih~aa~~-------~~~~~~~~~~~~nv~~t~~ll~a~----~~~~v~r~V~~SS~~vy~~~~~~~~~~~e~~~~~~ 153 (485)
|++||+||.. .+.++++..+++|+.++..+.+++ ++.+-.++|++||..... +.
T Consensus 68 D~lVnnAG~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~G~ii~i~S~~~~~---------------~~ 132 (234)
T d1o5ia_ 68 DILVLNAGGPKAGFFDELTNEDFKEAIDSLFLNMIKIVRNYLPAMKEKGWGRIVAITSFSVIS---------------PI 132 (234)
T ss_dssp SEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS---------------CC
T ss_pred cEEEecccccCCcchhhhhhHHHHHHhhhhhhhhhhhhhcccccccccccccccccccccccc---------------cc
Confidence 9999999922 133456778899999887776665 445566899999976542 23
Q ss_pred CCCchHHHHHHHHHHHHHHHhC---CCCceEEEEecCCcccCCCCCCh-HHHHHHHHcCCCeEEecCCCceeecccHHHH
Q 047227 154 KHNDFYSATKAEGEALVIKANG---TNGLLTCCIRPSSIFGPGDRLLV-PSLVAAARAGKSKFIIGDGNNVYDFTYVANV 229 (485)
Q Consensus 154 ~~~~~Y~~sK~~~E~~~~~~~~---~~g~~~~ilRp~~v~Gp~~~~~~-~~~~~~~~~g~~~~~~g~g~~~~~~i~v~D~ 229 (485)
.....|+.+|...+.+.+.++. .+|+++.++.||.+-.+...... ........+.. ....+...+|+
T Consensus 133 ~~~~~Y~asKaal~~ltk~lA~ela~~gIrVN~I~PG~v~T~~~~~~~~~~~~~~~~~~~---------pl~R~~~pedi 203 (234)
T d1o5ia_ 133 ENLYTSNSARMALTGFLKTLSFEVAPYGITVNCVAPGWTETERVKELLSEEKKKQVESQI---------PMRRMAKPEEI 203 (234)
T ss_dssp TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTHHHHSCHHHHHHHHTTS---------TTSSCBCHHHH
T ss_pred cccccchhHHHHHHHHHHHHHHHhcccCeEEeecccCccchhhhhhhcCHHHHHHHHhcC---------CCCCCcCHHHH
Confidence 4556899999999988877654 46899999999998765422111 12222333222 22346679999
Q ss_pred HHHHHHHHHHhccccchhhccCCcEEEeeCC
Q 047227 230 AHAHICAERALASEVTVAEKAAGQAYFVTNM 260 (485)
Q Consensus 230 a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~ 260 (485)
|.++..++... ..-..|+++.+.+|
T Consensus 204 A~~v~fL~S~~------s~~itG~~i~vDGG 228 (234)
T d1o5ia_ 204 ASVVAFLCSEK------ASYLTGQTIVVDGG 228 (234)
T ss_dssp HHHHHHHHSGG------GTTCCSCEEEESTT
T ss_pred HHHHHHHhChh------hcCCcCcEEEECcc
Confidence 99998875421 22267899988776
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=99.66 E-value=2.3e-16 Score=146.82 Aligned_cols=219 Identities=17% Similarity=0.171 Sum_probs=151.2
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc
Q 047227 3 GEENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ 82 (485)
Q Consensus 3 ~~~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~ 82 (485)
+..++|++|||||++-||.++++.|.++| ++|.+.+|+...... +...+ ..+..++.+|++|++++.++++
T Consensus 2 nrL~gK~alITGas~GIG~aia~~la~~G-a~V~~~~~~~~~~~~-------~~~~~-~~~~~~~~~Dv~~~~~~~~~~~ 72 (253)
T d1hxha_ 2 NRLQGKVALVTGGASGVGLEVVKLLLGEG-AKVAFSDINEAAGQQ-------LAAEL-GERSMFVRHDVSSEADWTLVMA 72 (253)
T ss_dssp CTTTTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEECSCHHHHHH-------HHHHH-CTTEEEECCCTTCHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHH-------HHHHh-CCCeEEEEeecCCHHHHHHHHH
Confidence 35678999999999999999999999999 699999886432111 11112 3568889999999988877764
Q ss_pred -------CCCEEEEcCCCC-------CCCCchhhhHHHHHHHHHHHHHHHHhc---CCCEEEEecCccccccCCCCcCCC
Q 047227 83 -------GAEVVFHMAAPN-------SSINNHKLHHSVNVEGTKNVIDACAEL---KVKRLIYTSSPSVVFDGVHGIING 145 (485)
Q Consensus 83 -------~~d~Vih~aa~~-------~~~~~~~~~~~~nv~~t~~ll~a~~~~---~v~r~V~~SS~~vy~~~~~~~~~~ 145 (485)
+.|++||+||.. .+.++++..+++|+.++..+.+++... .-.++|++||.....
T Consensus 73 ~~~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~G~Iv~isS~~~~~--------- 143 (253)
T d1hxha_ 73 AVQRRLGTLNVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETGGSIINMASVSSWL--------- 143 (253)
T ss_dssp HHHHHHCSCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTCEEEEEECCGGGTS---------
T ss_pred HHHHHhCCCCeEEecccccCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCceecccchhhhc---------
Confidence 489999999922 233467889999999988877765432 126899999976542
Q ss_pred CCCCCCCCCCCchHHHHHHHHHHHHHHHhCC-----CCceEEEEecCCcccCCC-----CCChHHHHHHHHcCCCeEEec
Q 047227 146 NEALPYPPKHNDFYSATKAEGEALVIKANGT-----NGLLTCCIRPSSIFGPGD-----RLLVPSLVAAARAGKSKFIIG 215 (485)
Q Consensus 146 ~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~-----~g~~~~ilRp~~v~Gp~~-----~~~~~~~~~~~~~g~~~~~~g 215 (485)
+......|+.+|+..+.+.+.++.+ +++++.++.||.+-.+.. ....... .....
T Consensus 144 ------~~~~~~~Y~asKaal~~lt~~lA~e~~~~g~~IrVN~I~PG~i~T~~~~~~~~~~~~~~~----~~~~~----- 208 (253)
T d1hxha_ 144 ------PIEQYAGYSASKAAVSALTRAAALSCRKQGYAIRVNSIHPDGIYTPMMQASLPKGVSKEM----VLHDP----- 208 (253)
T ss_dssp ------CCTTBHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEESEECCHHHHHHSCTTCCHHH----HBCBT-----
T ss_pred ------CccccccccchhHHHHHHHHHHHHHHhhcCCCEEEEEEeECCCcCHhHHhhCcchhhHHH----HHhCc-----
Confidence 2334568999999999988776532 469999999999864410 0000000 11100
Q ss_pred CCCceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCC
Q 047227 216 DGNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNM 260 (485)
Q Consensus 216 ~g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~ 260 (485)
.....-.+...+|+|++++.++... ..-..|+.++|.++
T Consensus 209 ~~~~~gr~~~pedvA~~v~fL~S~~------s~~itG~~i~VDGG 247 (253)
T d1hxha_ 209 KLNRAGRAYMPERIAQLVLFLASDE------SSVMSGSELHADNS 247 (253)
T ss_dssp TTBTTCCEECHHHHHHHHHHHHSGG------GTTCCSCEEEESSS
T ss_pred cccccCCCCCHHHHHHHHHHHhChh------hCCCcCcEEEECcc
Confidence 0011224667899999999875421 22267899988765
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.65 E-value=5.8e-16 Score=144.44 Aligned_cols=204 Identities=21% Similarity=0.140 Sum_probs=140.6
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc--
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ-- 82 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 82 (485)
.++|.+|||||++-||.++++.|.++| ++|.+.+|.........++ +.......++.++.+|++|++++.++++
T Consensus 8 lk~Kv~lITGas~GIG~aiA~~la~~G-~~Vv~~~r~~~~l~~~~~~---l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~ 83 (257)
T d1xg5a_ 8 WRDRLALVTGASGGIGAAVARALVQQG-LKVVGCARTVGNIEELAAE---CKSAGYPGTLIPYRCDLSNEEDILSMFSAI 83 (257)
T ss_dssp GTTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHH---HHHTTCSSEEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHH---HHhcCCCceEEEEEccCCCHHHHHHHHHHH
Confidence 567899999999999999999999999 6999998875321111111 1111123468889999999998877664
Q ss_pred -----CCCEEEEcCCCC-------CCCCchhhhHHHHHHHHHHHHHHH----HhcC--CCEEEEecCccccccCCCCcCC
Q 047227 83 -----GAEVVFHMAAPN-------SSINNHKLHHSVNVEGTKNVIDAC----AELK--VKRLIYTSSPSVVFDGVHGIIN 144 (485)
Q Consensus 83 -----~~d~Vih~aa~~-------~~~~~~~~~~~~nv~~t~~ll~a~----~~~~--v~r~V~~SS~~vy~~~~~~~~~ 144 (485)
+.|++||+|+.. .+.++++..+++|+.++..+.+++ ++.+ -.++|++||.+.+..
T Consensus 84 ~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~~~~~~~~~g~Ii~isS~~~~~~------- 156 (257)
T d1xg5a_ 84 RSQHSGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKERNVDDGHIININSMSGHRV------- 156 (257)
T ss_dssp HHHHCCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCSCEEEEECCGGGTSC-------
T ss_pred HHhcCCCCEEEecccccCCCccccccHHHHHhhhhhhhhHHHHHHHHHHHHHHHhccCCCceEEEechHhcCC-------
Confidence 489999999921 234567889999999988876665 3333 469999999765410
Q ss_pred CCCCCCCCCCCCchHHHHHHHHHHHHHHHh-----CCCCceEEEEecCCcccCCC----CCChHHHHHHHHcCCCeEEec
Q 047227 145 GNEALPYPPKHNDFYSATKAEGEALVIKAN-----GTNGLLTCCIRPSSIFGPGD----RLLVPSLVAAARAGKSKFIIG 215 (485)
Q Consensus 145 ~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~-----~~~g~~~~ilRp~~v~Gp~~----~~~~~~~~~~~~~g~~~~~~g 215 (485)
.|......|+.+|...+.+.+.++ ..+++++.++.||.+-.+.. ...........
T Consensus 157 ------~p~~~~~~Y~~sKaal~~ltr~la~el~~~~~~I~vn~i~PG~i~t~~~~~~~~~~~~~~~~~~---------- 220 (257)
T d1xg5a_ 157 ------LPLSVTHFYSATKYAVTALTEGLRQELREAQTHIRATCISPGVVETQFAFKLHDKDPEKAAATY---------- 220 (257)
T ss_dssp ------CSCGGGHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCBCSSHHHHHTTTCHHHHHHHH----------
T ss_pred ------CCCcccHHHHHHHHHHHhCHHHHHHHHHhCCCCEEEEEEeCCCCCChhhhhcChhhHHHHHhcC----------
Confidence 012334579999999999987765 35789999999987753311 01111111111
Q ss_pred CCCceeecccHHHHHHHHHHHHH
Q 047227 216 DGNNVYDFTYVANVAHAHICAER 238 (485)
Q Consensus 216 ~g~~~~~~i~v~D~a~a~~~~~~ 238 (485)
....+...+|+|++++.++.
T Consensus 221 ---~~~r~~~pedvA~~v~fL~s 240 (257)
T d1xg5a_ 221 ---EQMKCLKPEDVAEAVIYVLS 240 (257)
T ss_dssp ---C---CBCHHHHHHHHHHHHH
T ss_pred ---CCCCCcCHHHHHHHHHHHhC
Confidence 12346679999999998865
|
| >d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Thermus thermophilus [TaxId: 274]
Probab=99.65 E-value=1.5e-15 Score=141.68 Aligned_cols=222 Identities=13% Similarity=0.035 Sum_probs=151.7
Q ss_pred CCCCCEEEEEcCCC--chHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHh
Q 047227 4 EENERLCVVTGGRG--FAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQAL 81 (485)
Q Consensus 4 ~~~~~~iLVtGgtG--~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~ 81 (485)
..++|++|||||+| -||+++++.|.++| ++|.+.+|...... . .........+...+.+|++|++++++++
T Consensus 5 ~L~gK~alITGas~~~GIG~aiA~~la~~G-a~V~i~~~~~~~~~----~--~~~~~~~~~~~~~~~~D~~~~~~v~~~~ 77 (256)
T d1ulua_ 5 DLSGKKALVMGVTNQRSLGFAIAAKLKEAG-AEVALSYQAERLRP----E--AEKLAEALGGALLFRADVTQDEELDALF 77 (256)
T ss_dssp CCTTCEEEEESCCCSSSHHHHHHHHHHHTT-CEEEEEESSGGGHH----H--HHHHHHHTTCCEEEECCTTCHHHHHHHH
T ss_pred CCCCCEEEEECCCCCchHHHHHHHHHHHCC-CEEEEEeCcHHHHH----H--HHHhhhccCcccccccccCCHHHHHHHH
Confidence 56789999999997 69999999999999 68988887643111 0 0111122356788999999998888776
Q ss_pred c-------CCCEEEEcCCCC-----------CCCCchhhhHHHHHHHHHHHHHHHHhcC--CCEEEEecCccccccCCCC
Q 047227 82 Q-------GAEVVFHMAAPN-----------SSINNHKLHHSVNVEGTKNVIDACAELK--VKRLIYTSSPSVVFDGVHG 141 (485)
Q Consensus 82 ~-------~~d~Vih~aa~~-----------~~~~~~~~~~~~nv~~t~~ll~a~~~~~--v~r~V~~SS~~vy~~~~~~ 141 (485)
+ +.|++||+|+.. ....++...+++|+.++..+.+++...- -.++|++||.....
T Consensus 78 ~~~~~~~g~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~Iv~isS~~~~~----- 152 (256)
T d1ulua_ 78 AGVKEAFGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLTYYASEK----- 152 (256)
T ss_dssp HHHHHHHSSEEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEECGGGTS-----
T ss_pred HHHHHhcCCceEEEeccccccccccccchhhhhhhhhhHhhhhhHHHHHHHHHHHHHHhccCCEEEEEeehHhcC-----
Confidence 4 489999999831 1122455678999999999988876431 24799999876542
Q ss_pred cCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhC---CCCceEEEEecCCcccCCCCC--ChHHHHHHHHcCCCeEEecC
Q 047227 142 IINGNEALPYPPKHNDFYSATKAEGEALVIKANG---TNGLLTCCIRPSSIFGPGDRL--LVPSLVAAARAGKSKFIIGD 216 (485)
Q Consensus 142 ~~~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~---~~g~~~~ilRp~~v~Gp~~~~--~~~~~~~~~~~g~~~~~~g~ 216 (485)
+......|+.+|+..+.+.+.++. .+|+++.++.||.+..+.... ..........+..+.
T Consensus 153 ----------~~~~~~~Y~asKaal~~ltr~lA~ela~~gIrVN~I~PG~i~t~~~~~~~~~~~~~~~~~~~~pl----- 217 (256)
T d1ulua_ 153 ----------VVPKYNVMAIAKAALEASVRYLAYELGPKGVRVNAISAGPVRTVAARSIPGFTKMYDRVAQTAPL----- 217 (256)
T ss_dssp ----------BCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCC----------CHHHHHHHHHHSTT-----
T ss_pred ----------CCCCchHHHHHHHHHHHHHHHHHHHhcccCCEEeeeccceeeeccccchhhhHHHHHHHHhcCCC-----
Confidence 123457899999999999887764 368999999999987664332 113333333333221
Q ss_pred CCceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCCC
Q 047227 217 GNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMES 262 (485)
Q Consensus 217 g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~ 262 (485)
.-+...+|+|.+++.++... ..-..|+.+.|.+|..
T Consensus 218 ----~R~~~pedvA~~v~fL~S~~------s~~itG~~i~VDGG~~ 253 (256)
T d1ulua_ 218 ----RRNITQEEVGNLGLFLLSPL------ASGITGEVVYVDAGYH 253 (256)
T ss_dssp ----SSCCCHHHHHHHHHHHHSGG------GTTCCSCEEEESTTGG
T ss_pred ----CCCcCHHHHHHHHHHHhCch------hCCccCCeEEECcCEe
Confidence 22556899999998876421 1226789999887643
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.64 E-value=1.8e-15 Score=141.68 Aligned_cols=224 Identities=14% Similarity=0.105 Sum_probs=147.7
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhh-hcCCCeEEEEecCCCHHHHHHHhc-
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEA-LRSGRAHYVSFDLRHKAQVLQALQ- 82 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~l~~~~~- 82 (485)
.++|.+|||||++-||+++++.|.++| ++|.+.+|.........++ +... ....++..+.+|++|++++.++++
T Consensus 3 l~gKvalVTGas~GIG~aia~~la~~G-a~V~~~~r~~~~l~~~~~~---l~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~ 78 (264)
T d1spxa_ 3 FAEKVAIITGSSNGIGRATAVLFAREG-AKVTITGRHAERLEETRQQ---ILAAGVSEQNVNSVVADVTTDAGQDEILST 78 (264)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHH---HHHTTCCGGGEEEEECCTTSHHHHHHHHHH
T ss_pred CCCCEEEEeCcCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHH---HHhcCCCcCceEEEEccCCCHHHHHHHHHH
Confidence 468999999999999999999999999 6999999875421111111 1111 123468999999999998887764
Q ss_pred ------CCCEEEEcCCCC---C--------CCCchhhhHHHHHHHHHHHHHHHHhc---CCCEEEEecCcc-ccccCCCC
Q 047227 83 ------GAEVVFHMAAPN---S--------SINNHKLHHSVNVEGTKNVIDACAEL---KVKRLIYTSSPS-VVFDGVHG 141 (485)
Q Consensus 83 ------~~d~Vih~aa~~---~--------~~~~~~~~~~~nv~~t~~ll~a~~~~---~v~r~V~~SS~~-vy~~~~~~ 141 (485)
+.|++||+||.. . +.++++..+++|+.++..+.+++... +-.++|.++|.. .+.
T Consensus 79 ~~~~~g~iDilvnnAG~~~~~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~p~m~~~~g~iI~~~S~~~~~~----- 153 (264)
T d1spxa_ 79 TLGKFGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIALTKKAVPHLSSTKGEIVNISSIASGLH----- 153 (264)
T ss_dssp HHHHHSCCCEEEECCC-------------CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCTTSSSS-----
T ss_pred HHHHhCCCCEeecccccccCCccccccccCCHHHHHHHHHHhHHHHHHHHhhhCCccccccCcceeeeeeccccc-----
Confidence 489999999831 1 22356778999999998887776542 123556555533 221
Q ss_pred cCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhC---CCCceEEEEecCCcccCCCCC---------ChHHHHHHHHcCC
Q 047227 142 IINGNEALPYPPKHNDFYSATKAEGEALVIKANG---TNGLLTCCIRPSSIFGPGDRL---------LVPSLVAAARAGK 209 (485)
Q Consensus 142 ~~~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~---~~g~~~~ilRp~~v~Gp~~~~---------~~~~~~~~~~~g~ 209 (485)
+......|+.+|...+.+.+.++. .+|+++.++.||.+--+.... ..........+..
T Consensus 154 ----------~~~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~V~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (264)
T d1spxa_ 154 ----------ATPDFPYYSIAKAAIDQYTRNTAIDLIQHGIRVNSISPGLVATGFGSAMGMPEETSKKFYSTMATMKECV 223 (264)
T ss_dssp ----------CCTTSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCCCC--------------HHHHHHHHHHC
T ss_pred ----------cCCCchhhhhhhhhHHHHHHHHHHHhcccCeEEEEEeeCCCCCcchhccCCcHHHHHHHHHHHHHHHhcC
Confidence 123456799999999999887664 468999999999986543211 0111112222221
Q ss_pred CeEEecCCCceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCC
Q 047227 210 SKFIIGDGNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNME 261 (485)
Q Consensus 210 ~~~~~g~g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~ 261 (485)
| ..-+...+|+|++++.++.... ..-..|+.+.|.+|.
T Consensus 224 P---------l~R~g~pedvA~~v~fL~S~~~-----s~~itG~~i~vDGG~ 261 (264)
T d1spxa_ 224 P---------AGVMGQPQDIAEVIAFLADRKT-----SSYIIGHQLVVDGGS 261 (264)
T ss_dssp T---------TSSCBCHHHHHHHHHHHHCHHH-----HTTCCSCEEEESTTG
T ss_pred C---------CCCCcCHHHHHHHHHHHhCCcc-----cCCccCceEEeCCCh
Confidence 1 1235568999999998763110 112678999887764
|
| >d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dehydrogenase/reductase SDR family member 6, DHRS6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.63 E-value=5.5e-15 Score=136.69 Aligned_cols=220 Identities=16% Similarity=0.127 Sum_probs=157.4
Q ss_pred CCCCCCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHH
Q 047227 1 MSGEENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQA 80 (485)
Q Consensus 1 M~~~~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~ 80 (485)
|. ..++|++|||||++-||+++++.|.++| ++|.+.+|.+.. ++...+..+++...+|+.+.+.++..
T Consensus 1 m~-~l~gK~alITGas~GIG~aia~~la~~G-~~Vi~~~r~~~~----------l~~~~~~~~~~~~~~d~~~~~~~~~~ 68 (245)
T d2ag5a1 1 MG-RLDGKVIILTAAAQGIGQAAALAFAREG-AKVIATDINESK----------LQELEKYPGIQTRVLDVTKKKQIDQF 68 (245)
T ss_dssp CC-TTTTCEEEESSTTSHHHHHHHHHHHHTT-CEEEEEESCHHH----------HGGGGGSTTEEEEECCTTCHHHHHHH
T ss_pred CC-CCCCCEEEEeCCCCHHHHHHHHHHHHcC-CEEEEEeCCHHH----------HHHHHhccCCceeeeecccccccccc
Confidence 44 3678999999999999999999999999 699999987542 22233456788999999998777666
Q ss_pred hc---CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHHHh----cCCCEEEEecCccccccCCCCcCCCC
Q 047227 81 LQ---GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDACAE----LKVKRLIYTSSPSVVFDGVHGIINGN 146 (485)
Q Consensus 81 ~~---~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~~~----~~v~r~V~~SS~~vy~~~~~~~~~~~ 146 (485)
.+ +.|++||+++... +.+++...+++|+.++..+.+++.. .+-.++|++||...-.
T Consensus 69 ~~~~~~id~lVn~ag~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~~~g~Ii~isS~~~~~---------- 138 (245)
T d2ag5a1 69 ANEVERLDVLFNVAGFVHHGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQKSGNIINMSSVASSV---------- 138 (245)
T ss_dssp HHHCSCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCSBTTT----------
T ss_pred ccccccceeEEecccccCCCChhhCCHHHHHHHHHHhhccchhHHHhhCcccccCCCceeeeeechhhcc----------
Confidence 53 5999999999221 3346778999999999988777654 3456899999853310
Q ss_pred CCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCC------CChHHHHHHHHcCCCeEEecCC
Q 047227 147 EALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDR------LLVPSLVAAARAGKSKFIIGDG 217 (485)
Q Consensus 147 e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~------~~~~~~~~~~~~g~~~~~~g~g 217 (485)
.+......|+.+|+..+.+.+.++.+ +|+++.++.||.+-.|... ...........+..+
T Consensus 139 ----~~~~~~~~Y~~sKaal~~l~r~lA~e~~~~gIrvN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~p------- 207 (245)
T d2ag5a1 139 ----KGVVNRCVYSTTKAAVIGLTKSVAADFIQQGIRCNCVCPGTVDTPSLQERIQARGNPEEARNDFLKRQK------- 207 (245)
T ss_dssp ----BCCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCEECHHHHHHHHHSSSHHHHHHHHHHTCT-------
T ss_pred ----CCccchhHHHHHHHHHHHHHHHHHHHhhhhCcEEEEEeeceeechhhHhhhhhhhhhHHHHHHHHhcCC-------
Confidence 02345678999999999998887643 5899999999998765311 111122233333222
Q ss_pred CceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCC
Q 047227 218 NNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNME 261 (485)
Q Consensus 218 ~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~ 261 (485)
...+...+|+|+++..++... ..-..|+.+.|.+|.
T Consensus 208 --l~R~~~pedva~~v~fL~s~~------s~~iTG~~i~VDGG~ 243 (245)
T d2ag5a1 208 --TGRFATAEEIAMLCVYLASDE------SAYVTGNPVIIDGGW 243 (245)
T ss_dssp --TSSCEEHHHHHHHHHHHHSGG------GTTCCSCEEEECTTG
T ss_pred --CCCCcCHHHHHHHHHHHhChh------hCCCcCceEEeCCCc
Confidence 223667899999999886421 223678999888764
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=99.63 E-value=3.6e-15 Score=139.31 Aligned_cols=221 Identities=18% Similarity=0.138 Sum_probs=151.6
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhh--cCCCeEEEEecCCCHHHHHHH
Q 047227 3 GEENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEAL--RSGRAHYVSFDLRHKAQVLQA 80 (485)
Q Consensus 3 ~~~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~Dl~d~~~l~~~ 80 (485)
.+..+|++|||||++-||.++++.|.++| ++|.+.++......+. ....+ ...++..+.+|++|++++.++
T Consensus 2 ~~L~GK~alITGas~GIG~aia~~la~~G-~~Vvi~~~~~~~~~~~------~~~~~~~~g~~~~~~~~D~~~~~~v~~~ 74 (259)
T d1ja9a_ 2 KPLAGKVALTTGAGRGIGRGIAIELGRRG-ASVVVNYGSSSKAAEE------VVAELKKLGAQGVAIQADISKPSEVVAL 74 (259)
T ss_dssp CTTTTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESSCHHHHHH------HHHHHHHTTCCEEEEECCTTSHHHHHHH
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHcC-CEEEEEcCCChHHHHH------HHHHHHHcCCCceEecCCCCCHHHHHHH
Confidence 45678999999999999999999999999 6888766543321110 11111 135788999999999988877
Q ss_pred hc-------CCCEEEEcCCCC-------CCCCchhhhHHHHHHHHHHHHHHHHhcC--CCEEEEecCccc-cccCCCCcC
Q 047227 81 LQ-------GAEVVFHMAAPN-------SSINNHKLHHSVNVEGTKNVIDACAELK--VKRLIYTSSPSV-VFDGVHGII 143 (485)
Q Consensus 81 ~~-------~~d~Vih~aa~~-------~~~~~~~~~~~~nv~~t~~ll~a~~~~~--v~r~V~~SS~~v-y~~~~~~~~ 143 (485)
++ +.|++||+||.. ...++++..+++|+.+..++.+++...= -.+.+.++|... ..
T Consensus 75 ~~~~~~~~g~idilinnag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~~iii~s~~~~~~------- 147 (259)
T d1ja9a_ 75 FDKAVSHFGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILTSSIAAVMT------- 147 (259)
T ss_dssp HHHHHHHHSCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEECCGGGTCC-------
T ss_pred HHHHHHHcCCCcEEEeccccccccccccchHHHHHHHHhhccceeeeehhhhhhhhhcCCccccccccccccc-------
Confidence 64 489999999932 2334667889999999988888876531 235666665432 21
Q ss_pred CCCCCCCCCCCCCchHHHHHHHHHHHHHHHhC---CCCceEEEEecCCcccCC-------------CCCChHHHHHHHHc
Q 047227 144 NGNEALPYPPKHNDFYSATKAEGEALVIKANG---TNGLLTCCIRPSSIFGPG-------------DRLLVPSLVAAARA 207 (485)
Q Consensus 144 ~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~---~~g~~~~ilRp~~v~Gp~-------------~~~~~~~~~~~~~~ 207 (485)
+......|+.+|...+.+.+.++. .+|+++.++.||.+--+. .......+...+.+
T Consensus 148 --------~~~~~~~Y~asK~al~~l~r~lA~e~~~~gIrvN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (259)
T d1ja9a_ 148 --------GIPNHALYAGSKAAVEGFCRAFAVDCGAKGVTVNCIAPGGVKTDMFDENSWHYAPGGYKGMPQEKIDEGLAN 219 (259)
T ss_dssp --------SCCSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBSSHHHHHHGGGTSTTCCTTCCHHHHHHHHHH
T ss_pred --------CCCCchhHHHHHHHHHHHHHHHHHHHhhcCeEEeccCcCCccChhhhhhhhhhhhhhcccCCHHHHHHHHHh
Confidence 123456799999999998887664 368999999999985320 01112233344444
Q ss_pred CCCeEEecCCCceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCC
Q 047227 208 GKSKFIIGDGNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNM 260 (485)
Q Consensus 208 g~~~~~~g~g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~ 260 (485)
..+ ..-+...+|+|++++.++... ..-..|+.+.+.+|
T Consensus 220 ~~p---------l~R~g~p~eVa~~v~fL~S~~------a~~itG~~i~vDGG 257 (259)
T d1ja9a_ 220 MNP---------LKRIGYPADIGRAVSALCQEE------SEWINGQVIKLTGG 257 (259)
T ss_dssp TST---------TSSCBCHHHHHHHHHHHHSGG------GTTCCSCEEEESTT
T ss_pred CCC---------CCCCcCHHHHHHHHHHHhCch------hcCCcCceEEeCCC
Confidence 433 224667999999999886522 12267888888765
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=99.62 E-value=4.9e-15 Score=139.39 Aligned_cols=227 Identities=11% Similarity=0.068 Sum_probs=150.9
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhh-hcCCCeEEEEecCCCHHHHHHHhc-
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEA-LRSGRAHYVSFDLRHKAQVLQALQ- 82 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~l~~~~~- 82 (485)
.++|++|||||++-||+++++.|.++| ++|.+.+|+........++ +... ....++..+.+|++|++++.++++
T Consensus 2 L~gK~alITGas~GIG~aia~~la~~G-a~V~~~~r~~~~l~~~~~~---i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~ 77 (274)
T d1xhla_ 2 FSGKSVIITGSSNGIGRSAAVIFAKEG-AQVTITGRNEDRLEETKQQ---ILKAGVPAEKINAVVADVTEASGQDDIINT 77 (274)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHH---HHHTTCCGGGEEEEECCTTSHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHH---HHHcCCCCcceEEEEeeCCCHHHHHHHHHH
Confidence 468999999999999999999999999 6999999875421111010 1111 123468899999999998877764
Q ss_pred ------CCCEEEEcCCCC--C-------CCCchhhhHHHHHHHHHHHHHHHHh----cCCCEEEEecCccccccCCCCcC
Q 047227 83 ------GAEVVFHMAAPN--S-------SINNHKLHHSVNVEGTKNVIDACAE----LKVKRLIYTSSPSVVFDGVHGII 143 (485)
Q Consensus 83 ------~~d~Vih~aa~~--~-------~~~~~~~~~~~nv~~t~~ll~a~~~----~~v~r~V~~SS~~vy~~~~~~~~ 143 (485)
+.|++||+||.. . +.++++..+++|+.++..+.+++.. .+-.+++++||.....
T Consensus 78 ~~~~~G~iDilVnnAG~~~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~g~ii~~ss~~~~~------- 150 (274)
T d1xhla_ 78 TLAKFGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLIKTKGEIVNVSSIVAGPQ------- 150 (274)
T ss_dssp HHHHHSCCCEEEECCCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEECCGGGSSS-------
T ss_pred HHHHcCCceEEEeecccccccccccccCCHHHHHHHHhhcccccccccccccccccccccccccchhhhhccc-------
Confidence 489999999821 1 1234677899999999888777654 4455777777654321
Q ss_pred CCCCCCCCCCCCCchHHHHHHHHHHHHHHHhC---CCCceEEEEecCCcccCCCC-----CCh-HHHHHHHHcCCCeEEe
Q 047227 144 NGNEALPYPPKHNDFYSATKAEGEALVIKANG---TNGLLTCCIRPSSIFGPGDR-----LLV-PSLVAAARAGKSKFII 214 (485)
Q Consensus 144 ~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~---~~g~~~~ilRp~~v~Gp~~~-----~~~-~~~~~~~~~g~~~~~~ 214 (485)
+......|+.+|...+.+.+.++. .+|+++.++.||.+--|... ... ............
T Consensus 151 --------~~~~~~~Y~asKaal~~ltk~lA~ela~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~---- 218 (274)
T d1xhla_ 151 --------AHSGYPYYACAKAALDQYTRCTAIDLIQHGVRVNSVSPGAVATGFMGAMGLPETASDKLYSFIGSRKE---- 218 (274)
T ss_dssp --------CCTTSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSSHHHHTTCCHHHHHHHHHHHHHCTT----
T ss_pred --------cCCCCceehhhhhHHHHHHHHHHHHHhHhCCceeeeccCCCcCchhhhhcccchhhHHHHHHHHHHHc----
Confidence 123456899999999999877653 36899999999998654210 000 111111111111
Q ss_pred cCCCceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCC
Q 047227 215 GDGNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNME 261 (485)
Q Consensus 215 g~g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~ 261 (485)
..+..-+..++|+|.+++.++..-. ..-..|+.+.|.+|.
T Consensus 219 --~iPlgR~g~pediA~~v~fL~S~d~-----s~~itG~~i~vDGG~ 258 (274)
T d1xhla_ 219 --CIPVGHCGKPEEIANIIVFLADRNL-----SSYIIGQSIVADGGS 258 (274)
T ss_dssp --TCTTSSCBCHHHHHHHHHHHHCHHH-----HTTCCSCEEEESTTG
T ss_pred --CCCCCCCcCHHHHHHHHHHHcCCcc-----ccCccCcEEEeCcCH
Confidence 0112235679999999988763100 112689999998874
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=99.61 E-value=2.2e-15 Score=141.75 Aligned_cols=230 Identities=11% Similarity=0.036 Sum_probs=149.5
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhh-hcCCCeEEEEecCCCHHHHHHHhc
Q 047227 4 EENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEA-LRSGRAHYVSFDLRHKAQVLQALQ 82 (485)
Q Consensus 4 ~~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~l~~~~~ 82 (485)
..++|++|||||++-||+++++.|.++| ++|.+.+|+........++ +... ....++..+.+|++|++++.++++
T Consensus 2 rL~gK~alVTGas~GIG~aia~~la~~G-a~V~l~~r~~~~l~~~~~~---l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~ 77 (272)
T d1xkqa_ 2 RFSNKTVIITGSSNGIGRTTAILFAQEG-ANVTITGRSSERLEETRQI---ILKSGVSEKQVNSVVADVTTEDGQDQIIN 77 (272)
T ss_dssp TTTTCEEEETTCSSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHH---HHTTTCCGGGEEEEECCTTSHHHHHHHHH
T ss_pred CCCCCEEEEeCcCcHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHH---HHhcCCCCCceEEEEccCCCHHHHHHHHH
Confidence 4578999999999999999999999999 6999999875421111000 1111 123468899999999998877764
Q ss_pred -------CCCEEEEcCCCCC------C-CC----chhhhHHHHHHHHHHHHHHHHhc---CCCEEEEecCc-cccccCCC
Q 047227 83 -------GAEVVFHMAAPNS------S-IN----NHKLHHSVNVEGTKNVIDACAEL---KVKRLIYTSSP-SVVFDGVH 140 (485)
Q Consensus 83 -------~~d~Vih~aa~~~------~-~~----~~~~~~~~nv~~t~~ll~a~~~~---~v~r~V~~SS~-~vy~~~~~ 140 (485)
+.|++||+||... . .+ ++...+++|+.++..+.+++... +-.++|.++|. +...
T Consensus 78 ~~~~~~g~iDilvnnAG~~~~~~~~~~~~d~~~~~~~~~~~vNl~~~~~~~~~~~p~m~~~~g~iI~~~Ss~a~~~---- 153 (272)
T d1xkqa_ 78 STLKQFGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVIEMTKKVKPHLVASKGEIVNVSSIVAGPQ---- 153 (272)
T ss_dssp HHHHHHSCCCEEEECCCCCCCCTTCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCGGGSSS----
T ss_pred HHHHHhCCceEEEeCCcccCcccccccchhccHHHHHHHHHhhhhHHHHHHHhhcccccccCCccccccchhcccc----
Confidence 4899999999321 1 11 36678899999998888776542 22355655553 3221
Q ss_pred CcCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhC---CCCceEEEEecCCcccCCCC-----C-ChHHHHHHHHcCCCe
Q 047227 141 GIINGNEALPYPPKHNDFYSATKAEGEALVIKANG---TNGLLTCCIRPSSIFGPGDR-----L-LVPSLVAAARAGKSK 211 (485)
Q Consensus 141 ~~~~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~---~~g~~~~ilRp~~v~Gp~~~-----~-~~~~~~~~~~~g~~~ 211 (485)
+......|+.+|+..+.+.+.++. .+|+++.++.||.|-.+... . ..............
T Consensus 154 -----------~~~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~- 221 (272)
T d1xkqa_ 154 -----------AQPDFLYYAIAKAALDQYTRSTAIDLAKFGIRVNSVSPGMVETGFTNAMGMPDQASQKFYNFMASHKE- 221 (272)
T ss_dssp -----------CCCSSHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCBCSSHHHHTTCCHHHHHHHHHHHHHCTT-
T ss_pred -----------CCCCcchhhhHHHHHHHHHHHHHHHhcccCeEEEEEeeCCCcchhhhccCCchHHHHHHHHHHHHHhc-
Confidence 123456899999999998887763 47899999999998644211 0 01111111111111
Q ss_pred EEecCCCceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCCCc
Q 047227 212 FIIGDGNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMESI 263 (485)
Q Consensus 212 ~~~g~g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~~ 263 (485)
..+..-+...+|+|++++.++.... ..-..|+.+.|.+|..+
T Consensus 222 -----~~PlgR~g~pediA~~v~fL~S~~a-----s~~iTG~~i~vDGG~~l 263 (272)
T d1xkqa_ 222 -----CIPIGAAGKPEHIANIILFLADRNL-----SFYILGQSIVADGGTSL 263 (272)
T ss_dssp -----TCTTSSCBCHHHHHHHHHHHHCHHH-----HTTCCSCEEEESTTGGG
T ss_pred -----CCCCCCCcCHHHHHHHHHHHhCcch-----hCCccCeEEEeCcCHHH
Confidence 1112236678999999988763100 01267999999887543
|
| >d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Drosophila alcohol dehydrogenase species: Fly (Drosophila lebanonensis) [TaxId: 7225]
Probab=99.59 E-value=4.9e-14 Score=130.83 Aligned_cols=214 Identities=13% Similarity=0.037 Sum_probs=148.3
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCC-CHHHHHHHhc-
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLR-HKAQVLQALQ- 82 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~-d~~~l~~~~~- 82 (485)
.++|++|||||++-||..+++.|.++| .+|.++.|..... +...-+.......++.++.+|+. +.+++.++++
T Consensus 3 l~gK~vlITGgs~GIG~~~A~~la~~G-~~vii~~r~~~~~----~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 77 (254)
T d1sbya1 3 LTNKNVIFVAALGGIGLDTSRELVKRN-LKNFVILDRVENP----TALAELKAINPKVNITFHTYDVTVPVAESKKLLKK 77 (254)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTC-CSEEEEEESSCCH----HHHHHHHHHCTTSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCCEEEEecCCCHHHHHHHHHHHHCC-CEEEEEECCcccH----HHHHHHHhhCCCCCEEEEEeecCCCHHHHHHHHHH
Confidence 468999999999999999999999999 5777776654311 11111222233457889999997 6555655543
Q ss_pred ------CCCEEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhc-------CCCEEEEecCccccccCCCCcCCCCCCC
Q 047227 83 ------GAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAEL-------KVKRLIYTSSPSVVFDGVHGIINGNEAL 149 (485)
Q Consensus 83 ------~~d~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~-------~v~r~V~~SS~~vy~~~~~~~~~~~e~~ 149 (485)
++|++||+||.. ..++++..+++|+.|+.++..++... ...++|++||...+.
T Consensus 78 ~~~~~g~iDilvnnAG~~-~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~~~~g~Ii~isS~~~~~------------- 143 (254)
T d1sbya1 78 IFDQLKTVDILINGAGIL-DDHQIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANICSVTGFN------------- 143 (254)
T ss_dssp HHHHHSCCCEEEECCCCC-CTTCHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTS-------------
T ss_pred HHHHcCCCCEEEeCCCCC-CHHHHHHHHHHHhHHHHHHHHHHHHHhhhcccCCCceEEEEechhhcc-------------
Confidence 489999999943 34678899999999999888776542 135799999977652
Q ss_pred CCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCC---CC--ChHHHHHHHHcCCCeEEecCCCcee
Q 047227 150 PYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGD---RL--LVPSLVAAARAGKSKFIIGDGNNVY 221 (485)
Q Consensus 150 ~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~---~~--~~~~~~~~~~~g~~~~~~g~g~~~~ 221 (485)
+......|+.+|+....+.+.++.+ +|+++.++.||.|..+-. .. -..........+ +
T Consensus 144 --~~~~~~~Y~asKaal~~~t~~la~el~~~gIrVn~I~PG~v~T~~~~~~~~~~~~~~~~~~~~~~------------~ 209 (254)
T d1sbya1 144 --AIHQVPVYSASKAAVVSFTNSLAKLAPITGVTAYSINPGITRTPLVHTFNSWLDVEPRVAELLLS------------H 209 (254)
T ss_dssp --CCTTSHHHHHHHHHHHHHHHHHHHHHHHHSEEEEEEEECSEESHHHHSCCCGGGSCTTHHHHHTT------------S
T ss_pred --CCCCCHHHHHHHHHHHHHHHHHHhhccccCeEEEEEEeCCCcCccccccccchhHHHHHHhcccc------------C
Confidence 2345678999999999998887654 589999999999975410 00 000001111111 2
Q ss_pred ecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCC
Q 047227 222 DFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNM 260 (485)
Q Consensus 222 ~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~ 260 (485)
.....+++|++++.+++. ...|+++.+.++
T Consensus 210 ~~~~~e~va~~~~~~~~~---------~~tG~vi~vdgG 239 (254)
T d1sbya1 210 PTQTSEQCGQNFVKAIEA---------NKNGAIWKLDLG 239 (254)
T ss_dssp CCEEHHHHHHHHHHHHHH---------CCTTCEEEEETT
T ss_pred CCCCHHHHHHHHHHhhhC---------CCCCCEEEECCC
Confidence 234689999988877652 157888888876
|
| >d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Bacterial sepiapterin reductase species: Chlorobium tepidum [TaxId: 1097]
Probab=99.59 E-value=1.7e-14 Score=132.90 Aligned_cols=190 Identities=13% Similarity=0.121 Sum_probs=137.3
Q ss_pred EEEEEcCCCchHHHHHHHHHhcCCc------eEEEeecCCccccCCccchhhhhhhhc--CCCeEEEEecCCCHHHHHHH
Q 047227 9 LCVVTGGRGFAARHLVEMLIRYDMF------SVRIADLSDSIALEPHEEQGILGEALR--SGRAHYVSFDLRHKAQVLQA 80 (485)
Q Consensus 9 ~iLVtGgtG~iG~~l~~~Ll~~G~~------~V~~~~r~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~Dl~d~~~l~~~ 80 (485)
.||||||++-||+++++.|.++|.. .|.+.+|....... ....+. ..++..+.+|++|++++.++
T Consensus 3 VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~-------~~~~~~~~g~~~~~~~~Dvt~~~~v~~~ 75 (240)
T d2bd0a1 3 ILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEK-------ISLECRAEGALTDTITADISDMADVRRL 75 (240)
T ss_dssp EEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHH-------HHHHHHTTTCEEEEEECCTTSHHHHHHH
T ss_pred EEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHH-------HHHHHHhcCCcEEEEEecCCCHHHHHHH
Confidence 4799999999999999999999942 27777776432111 111121 34678899999999988877
Q ss_pred hc-------CCCEEEEcCCCC-------CCCCchhhhHHHHHHHHHHHHHHHH----hcCCCEEEEecCccccccCCCCc
Q 047227 81 LQ-------GAEVVFHMAAPN-------SSINNHKLHHSVNVEGTKNVIDACA----ELKVKRLIYTSSPSVVFDGVHGI 142 (485)
Q Consensus 81 ~~-------~~d~Vih~aa~~-------~~~~~~~~~~~~nv~~t~~ll~a~~----~~~v~r~V~~SS~~vy~~~~~~~ 142 (485)
++ +.|++||+|+.. .+.++++..+++|+.++..+.+++. +.+-.++|++||...+.
T Consensus 76 ~~~~~~~~g~iDilvnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Ii~isS~~~~~------ 149 (240)
T d2bd0a1 76 TTHIVERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQHSGHIFFITSVAATK------ 149 (240)
T ss_dssp HHHHHHHTSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS------
T ss_pred HHHHHHHcCCcceeecccccccCCccccCCHHHHhhcCCEeehHHHHHHHHHhHHHHhcCCCceEEEechhhcC------
Confidence 64 489999999932 2345678899999999888776654 44556999999977652
Q ss_pred CCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhC---CCCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCc
Q 047227 143 INGNEALPYPPKHNDFYSATKAEGEALVIKANG---TNGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNN 219 (485)
Q Consensus 143 ~~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~---~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~ 219 (485)
+......|+.+|...+.+.+.++. .+|+++.++.||.+--+..... +.+.
T Consensus 150 ---------~~~~~~~Y~asK~al~~lt~~la~el~~~gIrvn~i~PG~v~T~~~~~~------------------~~~~ 202 (240)
T d2bd0a1 150 ---------AFRHSSIYCMSKFGQRGLVETMRLYARKCNVRITDVQPGAVYTPMWGKV------------------DDEM 202 (240)
T ss_dssp ---------CCTTCHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCSTTTCCC------------------CSTT
T ss_pred ---------CCCCChHHHHHHHHHHHHHHHHHHHhCcCCeEEEEeeeCcccCchhhhc------------------CHhh
Confidence 123456899999999888877653 4789999999999865532110 1111
Q ss_pred eeecccHHHHHHHHHHHHH
Q 047227 220 VYDFTYVANVAHAHICAER 238 (485)
Q Consensus 220 ~~~~i~v~D~a~a~~~~~~ 238 (485)
...+...+|+|++++.++.
T Consensus 203 ~~~~~~PedvA~~v~~l~s 221 (240)
T d2bd0a1 203 QALMMMPEDIAAPVVQAYL 221 (240)
T ss_dssp GGGSBCHHHHHHHHHHHHT
T ss_pred HhcCCCHHHHHHHHHHHHc
Confidence 2235668999999998865
|
| >d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase species: Pseudomonas sp., lb400 [TaxId: 306]
Probab=99.59 E-value=8.8e-15 Score=137.79 Aligned_cols=216 Identities=17% Similarity=0.111 Sum_probs=147.1
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc--
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ-- 82 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 82 (485)
.++|++|||||++-||+++++.|.++| ++|.+.+|....... +... ...++..+.+|++|++++.++++
T Consensus 3 L~gK~alITGas~GIG~aia~~la~~G-a~V~i~~r~~~~l~~-------~~~~-~~~~~~~~~~Dv~~~~~~~~~~~~~ 73 (276)
T d1bdba_ 3 LKGEAVLITGGASGLGRALVDRFVAEG-AKVAVLDKSAERLAE-------LETD-HGDNVLGIVGDVRSLEDQKQAASRC 73 (276)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHH-------HHHH-HGGGEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHH-------HHHH-cCCCeeEEecccccHHHHHHHHHHH
Confidence 467999999999999999999999999 699999987432110 1111 13578899999999988877764
Q ss_pred -----CCCEEEEcCCCCCC--------CC----chhhhHHHHHHHHHHHHHHHH----hcCCCEEEEecCccccccCCCC
Q 047227 83 -----GAEVVFHMAAPNSS--------IN----NHKLHHSVNVEGTKNVIDACA----ELKVKRLIYTSSPSVVFDGVHG 141 (485)
Q Consensus 83 -----~~d~Vih~aa~~~~--------~~----~~~~~~~~nv~~t~~ll~a~~----~~~v~r~V~~SS~~vy~~~~~~ 141 (485)
+.|++||+||.... .+ +++..+++|+.++..+.+++. +.+ .++|++||...+.
T Consensus 74 ~~~~g~idilvnnAG~~~~~~~~~~~~~e~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~-g~iI~i~S~~~~~----- 147 (276)
T d1bdba_ 74 VARFGKIDTLIPNAGIWDYSTALVDLPEESLDAAFDEVFHINVKGYIHAVKACLPALVASR-GNVIFTISNAGFY----- 147 (276)
T ss_dssp HHHHSCCCEEECCCCCCCTTCCGGGSCTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEECCGGGTS-----
T ss_pred HHHhCCcccccccccccCCCCccccccccchhhhhhHHHHHhhHHHHHHHHHHHHHHHhcC-CCceeeeechhcc-----
Confidence 48999999993211 11 256789999999888876653 334 5888888865431
Q ss_pred cCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhCC--CCceEEEEecCCcccCCCCCC----------hHHHHHHHHcCC
Q 047227 142 IINGNEALPYPPKHNDFYSATKAEGEALVIKANGT--NGLLTCCIRPSSIFGPGDRLL----------VPSLVAAARAGK 209 (485)
Q Consensus 142 ~~~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~--~g~~~~ilRp~~v~Gp~~~~~----------~~~~~~~~~~g~ 209 (485)
+......|+.+|+..+.+.+.++.+ .++++.++.||.|--+-.... -..+...+.+..
T Consensus 148 ----------~~~~~~~Y~asKaal~~ltr~lA~ela~~IrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (276)
T d1bdba_ 148 ----------PNGGGPLYTAAKHAIVGLVRELAFELAPYVRVNGVGSGGINSDLRGPSSLGMGSKAISTVPLADMLKSVL 217 (276)
T ss_dssp ----------TTSSCHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCSCCCCCGGGC---------CHHHHHTTTC
T ss_pred ----------CCCCCchHHHHHHHHHHHHHHHHHHhhcceEEcccCCCCEecCcCCccchhhhhhccCcHHHHHHHHhcC
Confidence 1234567999999999988776532 249999999999865421110 011222222222
Q ss_pred CeEEecCCCceeecccHHHHHHHHHHHHH-HhccccchhhccCCcEEEeeCC
Q 047227 210 SKFIIGDGNNVYDFTYVANVAHAHICAER-ALASEVTVAEKAAGQAYFVTNM 260 (485)
Q Consensus 210 ~~~~~g~g~~~~~~i~v~D~a~a~~~~~~-~~~~~~~~~~~~~g~~ynv~~~ 260 (485)
| ..-+..++|+|.+++.++- .. ..-..|+.++|.+|
T Consensus 218 P---------lgR~g~peeva~~v~fL~S~~~------a~~itG~~i~VDGG 254 (276)
T d1bdba_ 218 P---------IGRMPEVEEYTGAYVFFATRGD------AAPATGALLNYDGG 254 (276)
T ss_dssp T---------TSSCCCGGGGSHHHHHHHCHHH------HTTCSSCEEEESSS
T ss_pred C---------CCCCcCHHHHHHHHHHHcCCcc------cCCeeCcEEEECcC
Confidence 2 1225568999999887642 11 12267999999776
|
| >d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.58 E-value=2.4e-14 Score=136.30 Aligned_cols=232 Identities=16% Similarity=0.084 Sum_probs=153.8
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCcc--chhhhhhhhcCCCeEEEEecCCCHHHHHHHhc
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHE--EQGILGEALRSGRAHYVSFDLRHKAQVLQALQ 82 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~--~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~ 82 (485)
.++|++|||||++-||+++++.|.++| ++|.+.++.......... .......... .....+.+|+.|.++.+++++
T Consensus 5 l~gKvalITGas~GIG~aiA~~la~~G-a~Vvi~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~v~ 82 (302)
T d1gz6a_ 5 FDGRVVLVTGAGGGLGRAYALAFAERG-ALVVVNDLGGDFKGVGKGSSAADKVVEEIR-RRGGKAVANYDSVEAGEKLVK 82 (302)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEECCCBCTTSCBCCSHHHHHHHHHHH-HTTCEEEEECCCGGGHHHHHH
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHcC-CEEEEEeCCchhhhhhhhHHHHHHHHHHHh-hcccccccccchHHHHHHHHH
Confidence 468999999999999999999999999 699999887542211111 1001111111 233456678877655544432
Q ss_pred -------CCCEEEEcCCCC-------CCCCchhhhHHHHHHHHHHHHHHHH----hcCCCEEEEecCccccccCCCCcCC
Q 047227 83 -------GAEVVFHMAAPN-------SSINNHKLHHSVNVEGTKNVIDACA----ELKVKRLIYTSSPSVVFDGVHGIIN 144 (485)
Q Consensus 83 -------~~d~Vih~aa~~-------~~~~~~~~~~~~nv~~t~~ll~a~~----~~~v~r~V~~SS~~vy~~~~~~~~~ 144 (485)
+.|++||+||.. .+.++++..+++|+.++.++.+++. +.+-.++|++||.....
T Consensus 83 ~~~~~~G~iDiLVnNAGi~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~IV~isS~~~~~-------- 154 (302)
T d1gz6a_ 83 TALDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQNYGRIIMTASASGIY-------- 154 (302)
T ss_dssp HHHHHTSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHH--------
T ss_pred HHHHHcCCCCEEEECCccCCCCChhhCCHHHHhhhhceeehhhHHHHHHhHHHHHhCCCcEEEEeCChhhcC--------
Confidence 599999999932 1334677899999999988877744 45566999999987653
Q ss_pred CCCCCCCCCCCCchHHHHHHHHHHHHHHHhC---CCCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCcee
Q 047227 145 GNEALPYPPKHNDFYSATKAEGEALVIKANG---TNGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVY 221 (485)
Q Consensus 145 ~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~---~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~~ 221 (485)
+......|+.+|...+.+.+.++. .+|+++.++.|+.+--+.....-. ...
T Consensus 155 -------~~~~~~~Y~asKaal~~lt~~la~E~~~~gIrVN~I~PG~~~t~~~~~~~~-------------------~~~ 208 (302)
T d1gz6a_ 155 -------GNFGQANYSAAKLGLLGLANTLVIEGRKNNIHCNTIAPNAGSRMTETVMPE-------------------DLV 208 (302)
T ss_dssp -------CCTTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEEECCSTTTGGGSCH-------------------HHH
T ss_pred -------CCCCcHHHHHHHHHHHHHHHHHHHHHhccCCceeeeCCCCCCcchhhcCcH-------------------hhH
Confidence 123457899999999999887764 368999999998763222111111 112
Q ss_pred ecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCC-------------------CCccHHHHHHHHHHHcCCC
Q 047227 222 DFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNM-------------------ESIKFWEFVSLILEGLGYQ 279 (485)
Q Consensus 222 ~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~-------------------~~~t~~el~~~i~~~~g~~ 279 (485)
..+..+|+|.+++.++.. .....|+++.+.+| ++.|..++.+.+.+.....
T Consensus 209 ~~~~PedvA~~v~fL~S~-------~a~itG~~i~vdGG~~~~~~~~~~~g~~~~~~~~~~t~e~i~~~~~~i~d~~ 278 (302)
T d1gz6a_ 209 EALKPEYVAPLVLWLCHE-------SCEENGGLFEVGAGWIGKLRWERTLGAIVRKRNQPMTPEAVRDNWVKICDFS 278 (302)
T ss_dssp HHSCGGGTHHHHHHHTST-------TCCCCSCEEEEETTEEEEEEEEECCCEECCBTTBCCCHHHHHHTHHHHTCCT
T ss_pred hcCCHHHHHHHHHHHcCC-------CcCCCCcEEEeCCCceeEEEEeecCcccccCCCCCCCHHHHHHHHHHHhCcc
Confidence 234468999998877431 11256666666443 2456777777777766543
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=99.58 E-value=5e-14 Score=132.40 Aligned_cols=222 Identities=14% Similarity=0.067 Sum_probs=152.2
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhh--cCCCeEEEEecCCCHHHHHHHh
Q 047227 4 EENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEAL--RSGRAHYVSFDLRHKAQVLQAL 81 (485)
Q Consensus 4 ~~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~Dl~d~~~l~~~~ 81 (485)
+.++|++|||||++-||+++++.|.++| ++|.+.++....... + ....+ ...++..+.+|++|++++.+.+
T Consensus 15 sL~gK~~lITGas~GIG~aia~~la~~G-a~Vvi~~~~~~~~~~---~---~~~~~~~~g~~~~~~~~D~~~~~~v~~~~ 87 (272)
T d1g0oa_ 15 SLEGKVALVTGAGRGIGREMAMELGRRG-CKVIVNYANSTESAE---E---VVAAIKKNGSDAACVKANVGVVEDIVRMF 87 (272)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESSCHHHHH---H---HHHHHHHTTCCEEEEECCTTCHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcC-CEEEEEeCCchHHHH---H---HHHHHHhhCCceeeEeCCCCCHHHHHHHH
Confidence 3578999999999999999999999999 689888876432111 0 11111 2457889999999998887776
Q ss_pred c-------CCCEEEEcCCCC-------CCCCchhhhHHHHHHHHHHHHHHHHhc--CCCEEEEecCccccccCCCCcCCC
Q 047227 82 Q-------GAEVVFHMAAPN-------SSINNHKLHHSVNVEGTKNVIDACAEL--KVKRLIYTSSPSVVFDGVHGIING 145 (485)
Q Consensus 82 ~-------~~d~Vih~aa~~-------~~~~~~~~~~~~nv~~t~~ll~a~~~~--~v~r~V~~SS~~vy~~~~~~~~~~ 145 (485)
+ +.|++||+++.. ....++...+++|+.++..+.+++... .-.+.++++|.....
T Consensus 88 ~~~~~~~g~idilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~g~~i~i~s~~~~~--------- 158 (272)
T d1g0oa_ 88 EEAVKIFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMGSITGQA--------- 158 (272)
T ss_dssp HHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEECCGGGTC---------
T ss_pred HHHHHHhCCCCccccccccchhhhhhhhhhhHHHHHhhhccceeeeecccccccccccccccccccccccc---------
Confidence 4 489999999922 233466778999999999998887753 124777787754321
Q ss_pred CCCCCCCCCCCchHHHHHHHHHHHHHHHhC---CCCceEEEEecCCcccCCC-----------CCC-hHHHHH-HHHcCC
Q 047227 146 NEALPYPPKHNDFYSATKAEGEALVIKANG---TNGLLTCCIRPSSIFGPGD-----------RLL-VPSLVA-AARAGK 209 (485)
Q Consensus 146 ~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~---~~g~~~~ilRp~~v~Gp~~-----------~~~-~~~~~~-~~~~g~ 209 (485)
.+......|+.+|+..+.+.+.++. .+|+++.++.||.+-.+.. ... -..... ...+..
T Consensus 159 -----~~~~~~~~Y~asKaal~~ltk~lA~e~~~~gIrVN~I~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (272)
T d1g0oa_ 159 -----KAVPKHAVYSGSKGAIETFARCMAIDMADKKITVNVVAPGGIKTDMYHAVCREYIPNGENLSNEEVDEYAAVQWS 233 (272)
T ss_dssp -----SSCSSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBSSHHHHHHGGGGSTTCTTCCHHHHHHHHHHHSC
T ss_pred -----ccccchhhHHHHHHHHHHHHHHHHHHhchhCeEEEEEccCCcCChHHHHHHHhhhhcccccchHHHHHHHHHccC
Confidence 0123456799999999999887664 3689999999999854310 011 111111 112222
Q ss_pred CeEEecCCCceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCC
Q 047227 210 SKFIIGDGNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNME 261 (485)
Q Consensus 210 ~~~~~g~g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~ 261 (485)
+ ..-+...+|+|.++..++... ..-..|+...|.+|.
T Consensus 234 P---------lgR~~~peevA~~v~fL~s~~------s~~itG~~i~vDGG~ 270 (272)
T d1g0oa_ 234 P---------LRRVGLPIDIARVVCFLASND------GGWVTGKVIGIDGGA 270 (272)
T ss_dssp T---------TCSCBCHHHHHHHHHHHHSGG------GTTCCSCEEEESTTC
T ss_pred C---------CCCCcCHHHHHHHHHHHhCch------hcCccCceEeECCCC
Confidence 1 123677899999999886421 122678888887764
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.57 E-value=2.7e-15 Score=138.46 Aligned_cols=195 Identities=10% Similarity=0.029 Sum_probs=139.7
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc-
Q 047227 4 EENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ- 82 (485)
Q Consensus 4 ~~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~- 82 (485)
+..+|.+|||||++-||+++++.|.++| ++|.+.+|..........+ +. ...+++..+.+|++|++++.++++
T Consensus 4 ~l~Gkv~lITGas~GIG~~ia~~la~~G-~~V~l~~r~~~~l~~~~~~---~~--~~~~~~~~~~~Dvs~~~~v~~~~~~ 77 (244)
T d1yb1a_ 4 SVTGEIVLITGAGHGIGRLTAYEFAKLK-SKLVLWDINKHGLEETAAK---CK--GLGAKVHTFVVDCSNREDIYSSAKK 77 (244)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHH---HH--HTTCCEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHH---HH--hcCCcEEEEEeeCCCHHHHHHHHHH
Confidence 3468999999999999999999999999 7999999975422111111 11 124578999999999998887764
Q ss_pred ------CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHH----HhcCCCEEEEecCccccccCCCCcCCC
Q 047227 83 ------GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDAC----AELKVKRLIYTSSPSVVFDGVHGIING 145 (485)
Q Consensus 83 ------~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~----~~~~v~r~V~~SS~~vy~~~~~~~~~~ 145 (485)
+.|++||+|+... ..++++..+++|+.++.++.+++ ++.+-.++|++||...+.
T Consensus 78 i~~~~g~idilinnag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~G~Iv~isS~~~~~--------- 148 (244)
T d1yb1a_ 78 VKAEIGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKNNHGHIVTVASAAGHV--------- 148 (244)
T ss_dssp HHHHTCCCSEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCC-CC---------
T ss_pred HHHHcCCCceeEeeccccccccccccchhHHHhhcceeeeccHHHHHHHhhhHHhcCCceEEEeecchhcC---------
Confidence 4899999999321 12245678999999988887654 455667999999977642
Q ss_pred CCCCCCCCCCCchHHHHHHHHHHHHHHHhCC------CCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCc
Q 047227 146 NEALPYPPKHNDFYSATKAEGEALVIKANGT------NGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNN 219 (485)
Q Consensus 146 ~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~------~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~ 219 (485)
+......|+.||+..+.+.+.++.+ .|+++.++.||.+--+...... ..
T Consensus 149 ------~~~~~~~Y~asKaal~~~~~~La~El~~~~~~gI~V~~i~PG~v~T~~~~~~~-------------------~~ 203 (244)
T d1yb1a_ 149 ------SVPFLLAYCSSKFAAVGFHKTLTDELAALQITGVKTTCLCPNFVNTGFIKNPS-------------------TS 203 (244)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEEEETHHHHCSTTCTH-------------------HH
T ss_pred ------CCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCEEEEEEEcCCCCChhhhCcC-------------------cc
Confidence 1223467999999999988877642 4799999999987544211100 01
Q ss_pred eeecccHHHHHHHHHHHHH
Q 047227 220 VYDFTYVANVAHAHICAER 238 (485)
Q Consensus 220 ~~~~i~v~D~a~a~~~~~~ 238 (485)
....+..+|+|+.++..+.
T Consensus 204 ~~~~~~pe~va~~i~~~~~ 222 (244)
T d1yb1a_ 204 LGPTLEPEEVVNRLMHGIL 222 (244)
T ss_dssp HCCCCCHHHHHHHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHHHh
Confidence 1234468999998887765
|
| >d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Halohydrin dehalogenase HheC species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.57 E-value=3.7e-15 Score=138.51 Aligned_cols=211 Identities=13% Similarity=0.102 Sum_probs=143.2
Q ss_pred EEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHh-------
Q 047227 9 LCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQAL------- 81 (485)
Q Consensus 9 ~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~------- 81 (485)
++|||||++-||..+++.|.++| ++|.+.+|+.... ++ +.. ....+..+|+.|.+++.+++
T Consensus 2 TAlVTGas~GiG~aiA~~la~~G-a~V~i~~r~~~~~----~~---~~~----~~~~~~~~dv~~~~~~~~~~~~~~~~~ 69 (252)
T d1zmta1 2 TAIVTNVKHFGGMGSALRLSEAG-HTVACHDESFKQK----DE---LEA----FAETYPQLKPMSEQEPAELIEAVTSAY 69 (252)
T ss_dssp EEEESSTTSTTHHHHHHHHHHTT-CEEEECCGGGGSH----HH---HHH----HHHHCTTSEECCCCSHHHHHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCHHHH----HH---HHh----hhCcEEEeccCCHHHHHHHHHHHHHHc
Confidence 68999999999999999999999 6999988764421 11 111 11123346666654444443
Q ss_pred cCCCEEEEcCCCC---C-----CCCchhhhHHHHHHHHHHHHHHH----HhcCCCEEEEecCccccccCCCCcCCCCCCC
Q 047227 82 QGAEVVFHMAAPN---S-----SINNHKLHHSVNVEGTKNVIDAC----AELKVKRLIYTSSPSVVFDGVHGIINGNEAL 149 (485)
Q Consensus 82 ~~~d~Vih~aa~~---~-----~~~~~~~~~~~nv~~t~~ll~a~----~~~~v~r~V~~SS~~vy~~~~~~~~~~~e~~ 149 (485)
-+.|++||+|+.. . +.++++..+++|+.++.++.+++ ++.+-.++|++||...+.
T Consensus 70 G~iDiLVnNAg~~~~~~~~~~~~~e~~~~~~~vnl~~~~~~~~~~~~~m~~~~~G~IV~isS~~~~~------------- 136 (252)
T d1zmta1 70 GQVDVLVSNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKRKSGHIIFITSATPFG------------- 136 (252)
T ss_dssp SCCCEEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCSTTTS-------------
T ss_pred CCCCEEEECCcCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhcccccceeeccccccccc-------------
Confidence 2589999999822 1 22356778899999988877664 444567999999976642
Q ss_pred CCCCCCCchHHHHHHHHHHHHHHHhC---CCCceEEEEecCCcccCCCCCC--------hHHHHHHHHcCCCeEEecCCC
Q 047227 150 PYPPKHNDFYSATKAEGEALVIKANG---TNGLLTCCIRPSSIFGPGDRLL--------VPSLVAAARAGKSKFIIGDGN 218 (485)
Q Consensus 150 ~~~~~~~~~Y~~sK~~~E~~~~~~~~---~~g~~~~ilRp~~v~Gp~~~~~--------~~~~~~~~~~g~~~~~~g~g~ 218 (485)
+......|+.+|...+.+.+.++. .+|+++.++.||.+-.+..... -+.....+.+..+.
T Consensus 137 --~~~~~~~Y~asKaal~~lt~~lA~ela~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~e~~~~~~~~~pl------- 207 (252)
T d1zmta1 137 --PWKELSTYTSARAGACTLANALSKELGEYNIPVFAIGPNYLHSEDSPYFYPTEPWKTNPEHVAHVKKVTAL------- 207 (252)
T ss_dssp --CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCCEEEEEESSBCCBTCCSSCBHHHHTTCHHHHHHHHHHSSS-------
T ss_pred --ccccccccccccccHHHHHHHHHHHhcccCcEEEEEecCCCcCcchhhhhhcccccCCHHHHHHHHhcCCC-------
Confidence 123456899999999999887764 3689999999999876543322 12233333333221
Q ss_pred ceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCC
Q 047227 219 NVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNME 261 (485)
Q Consensus 219 ~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~ 261 (485)
.-+...+|+|.+++.++... ..-..|+.+.|.+|-
T Consensus 208 --~R~g~pedvA~~v~fL~S~~------s~~iTG~~i~vdGG~ 242 (252)
T d1zmta1 208 --QRLGTQKELGELVAFLASGS------CDYLTGQVFWLAGGF 242 (252)
T ss_dssp --SSCBCHHHHHHHHHHHHTTS------CGGGTTCEEEESTTC
T ss_pred --CCCcCHHHHHHHHHHHhCch------hcCCcCCeEEECCCc
Confidence 12566999999999886421 223679999998764
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=99.57 E-value=4.5e-14 Score=134.31 Aligned_cols=223 Identities=16% Similarity=0.096 Sum_probs=148.9
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc-
Q 047227 4 EENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ- 82 (485)
Q Consensus 4 ~~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~- 82 (485)
+.++|++|||||+|-||+++++.|.++| ++|.+.+|+........++ +.. .....+..+.+|++|.+++.++++
T Consensus 22 ~l~gK~alITGas~GIG~aiA~~la~~G-a~Vii~~r~~~~l~~~~~~---l~~-~~g~~~~~~~~D~~~~~~v~~~~~~ 96 (294)
T d1w6ua_ 22 SFQGKVAFITGGGTGLGKGMTTLLSSLG-AQCVIASRKMDVLKATAEQ---ISS-QTGNKVHAIQCDVRDPDMVQNTVSE 96 (294)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHH---HHH-HHSSCEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcC-CEEEEEECCHHHHHHHHHH---HHH-hcCCceEEEEecccChHHHHHHhhh
Confidence 4678999999999999999999999999 6999999875422111111 111 124578899999999998876653
Q ss_pred ------CCCEEEEcCCCCCC-------CCchhhhHHHHHHHHHHHHHHHHh----c-CCCEEEEecCccccccCCCCcCC
Q 047227 83 ------GAEVVFHMAAPNSS-------INNHKLHHSVNVEGTKNVIDACAE----L-KVKRLIYTSSPSVVFDGVHGIIN 144 (485)
Q Consensus 83 ------~~d~Vih~aa~~~~-------~~~~~~~~~~nv~~t~~ll~a~~~----~-~v~r~V~~SS~~vy~~~~~~~~~ 144 (485)
+.|++||+|+.... ..+....+.+|..+...+...+.. . +...++.+||.....
T Consensus 97 ~~~~~g~iDilvnnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~i~~~ss~~~~~-------- 168 (294)
T d1w6ua_ 97 LIKVAGHPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVTLEIGKQLIKAQKGAAFLSITTIYAET-------- 168 (294)
T ss_dssp HHHHTCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTHHHH--------
T ss_pred hhhhccccchhhhhhhhccccccccchhhhhhhheeeecccchhhhhhhhcccccccccccccccccchhhh--------
Confidence 48999999993221 224556678888887776554332 2 244677777654432
Q ss_pred CCCCCCCCCCCCchHHHHHHHHHHHHHHHhC---CCCceEEEEecCCcccCCCCCC---hHHHHHHHHcCCCeEEecCCC
Q 047227 145 GNEALPYPPKHNDFYSATKAEGEALVIKANG---TNGLLTCCIRPSSIFGPGDRLL---VPSLVAAARAGKSKFIIGDGN 218 (485)
Q Consensus 145 ~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~---~~g~~~~ilRp~~v~Gp~~~~~---~~~~~~~~~~g~~~~~~g~g~ 218 (485)
+......|+.+|...+.+.+.++. .+|+++.++.||.+-.+..... .........+..+
T Consensus 169 -------~~~~~~~YsasKaal~~ltk~lA~ela~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~p-------- 233 (294)
T d1w6ua_ 169 -------GSGFVVPSASAKAGVEAMSKSLAAEWGKYGMRFNVIQPGPIKTKGAFSRLDPTGTFEKEMIGRIP-------- 233 (294)
T ss_dssp -------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCC------CCTTSHHHHHHHTTCT--------
T ss_pred -------cccccchHHHHHHHHHHHHHHHHHHHhHhCeEEEEEccCccccchhhhccCCcHHHHHHHhhcCC--------
Confidence 123456799999999999887764 4689999999999976542211 1122333333322
Q ss_pred ceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCC
Q 047227 219 NVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNME 261 (485)
Q Consensus 219 ~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~ 261 (485)
..-+...+|+|.++..++... ..-..|++..+.+|.
T Consensus 234 -l~R~~~pediA~~v~fL~sd~------s~~itG~~i~vDGG~ 269 (294)
T d1w6ua_ 234 -CGRLGTVEELANLAAFLCSDY------ASWINGAVIKFDGGE 269 (294)
T ss_dssp -TSSCBCHHHHHHHHHHHTSGG------GTTCCSCEEEESTTH
T ss_pred -CCCCCCHHHHHHHHHHHhCch------hcCCCCcEEEECCCh
Confidence 123556899999999875421 122689999998874
|
| >d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Erythromycin synthase, eryAI, 1st ketoreductase module species: Saccharopolyspora erythraea [TaxId: 1836]
Probab=99.57 E-value=1.2e-14 Score=135.72 Aligned_cols=201 Identities=20% Similarity=0.176 Sum_probs=141.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhh-hcCCCeEEEEecCCCHHHHHHHhcC-
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEA-LRSGRAHYVSFDLRHKAQVLQALQG- 83 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~l~~~~~~- 83 (485)
++.++|||||+|-||.+++++|.++|..+|.++.|+...... ..+ ..... ....++.++.+|++|++++.++++.
T Consensus 8 p~gt~lVTGgs~GIG~a~a~~la~~Ga~~vvl~~R~~~~~~~-~~~--~~~~l~~~g~~v~~~~~Dv~d~~~~~~~~~~i 84 (259)
T d2fr1a1 8 PTGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDADG-AGE--LVAELEALGARTTVAACDVTDRESVRELLGGI 84 (259)
T ss_dssp CCSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGGGSTT-HHH--HHHHHHHTTCEEEEEECCTTCHHHHHHHHHTS
T ss_pred CcCEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCccCHHH-HHH--HHHHHHhccccccccccccchHHHHHHhhccc
Confidence 456999999999999999999999995367777775332111 111 12221 1245789999999999999888752
Q ss_pred -----CCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCccccccCCCCcCCCCCCCCC
Q 047227 84 -----AEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVVFDGVHGIINGNEALPY 151 (485)
Q Consensus 84 -----~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy~~~~~~~~~~~e~~~~ 151 (485)
.|.|+|+++... ...+....+++|+.++.++.++++..+..++|++||.....
T Consensus 85 ~~~~~i~~vv~~ag~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~iv~~SS~a~~~--------------- 149 (259)
T d2fr1a1 85 GDDVPLSAVFHAAATLDDGTVDTLTGERIERASRAKVLGARNLHELTRELDLTAFVLFSSFASAF--------------- 149 (259)
T ss_dssp CTTSCEEEEEECCCCCCCCCGGGCCHHHHHHHTHHHHHHHHHHHHHHTTSCCSEEEEEEEHHHHT---------------
T ss_pred cccccccccccccccccccccccccHHHHHHHhhhhccchhHHHHHhhccCCceEeeecchhhcc---------------
Confidence 789999999322 22245667899999999999999888888999999977653
Q ss_pred CCCCCchHHHHHHHHHHHHHHHhCCCCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCceeecccHHHHHH
Q 047227 152 PPKHNDFYSATKAEGEALVIKANGTNGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAH 231 (485)
Q Consensus 152 ~~~~~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~D~a~ 231 (485)
+......|+.+|...+.+.+.+.. .|++++++.||.+.+++-.. ......... .| ...+..+++++
T Consensus 150 g~~~~~~YaAaka~l~~la~~~~~-~Gi~v~~I~pg~~~~~g~~~--~~~~~~~~~--------~G---~~~~~~~~~~~ 215 (259)
T d2fr1a1 150 GAPGLGGYAPGNAYLDGLAQQRRS-DGLPATAVAWGTWAGSGMAE--GPVADRFRR--------HG---VIEMPPETACR 215 (259)
T ss_dssp CCTTCTTTHHHHHHHHHHHHHHHH-TTCCCEEEEECCBC--------------CTT--------TT---EECBCHHHHHH
T ss_pred CCcccHHHHHHHHhHHHHHHHHHh-CCCCEEECCCCcccCCcccc--chHHHHHHh--------cC---CCCCCHHHHHH
Confidence 123456799999999999888764 68999999999988764210 001111000 11 23567899999
Q ss_pred HHHHHHH
Q 047227 232 AHICAER 238 (485)
Q Consensus 232 a~~~~~~ 238 (485)
++..++.
T Consensus 216 ~l~~~l~ 222 (259)
T d2fr1a1 216 ALQNALD 222 (259)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9888876
|
| >d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sepiapterin reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.55 E-value=8.8e-14 Score=129.72 Aligned_cols=207 Identities=19% Similarity=0.141 Sum_probs=140.6
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHh---cCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHH
Q 047227 4 EENERLCVVTGGRGFAARHLVEMLIR---YDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQA 80 (485)
Q Consensus 4 ~~~~~~iLVtGgtG~iG~~l~~~Ll~---~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~ 80 (485)
..++|.++||||++-||.++++.|.+ +| ++|.+.+|.........++ +.......++..+.+|++|++++.++
T Consensus 3 ~L~gKvalITGas~GIG~aiA~~lA~~~~~G-~~Vv~~~r~~~~l~~~~~~---l~~~~~~~~~~~~~~Dvs~~~~v~~l 78 (259)
T d1oaaa_ 3 GLGCAVCVLTGASRGFGRALAPQLARLLSPG-SVMLVSARSESMLRQLKEE---LGAQQPDLKVVLAAADLGTEAGVQRL 78 (259)
T ss_dssp CCBSEEEEESSCSSHHHHHHHHHHHTTBCTT-CEEEEEESCHHHHHHHHHH---HHHHCTTSEEEEEECCTTSHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHhcccCC-CEEEEEECCHHHHHHHHHH---HHhhcCCceEEEEEccCCCHHHHHHH
Confidence 45678999999999999999999975 68 6999999875421111111 11111234688999999999888777
Q ss_pred hc-----------CCCEEEEcCCCCC----------CCCchhhhHHHHHHHHHHHHHHHHhc----C--CCEEEEecCcc
Q 047227 81 LQ-----------GAEVVFHMAAPNS----------SINNHKLHHSVNVEGTKNVIDACAEL----K--VKRLIYTSSPS 133 (485)
Q Consensus 81 ~~-----------~~d~Vih~aa~~~----------~~~~~~~~~~~nv~~t~~ll~a~~~~----~--v~r~V~~SS~~ 133 (485)
++ ..|+++|+|+... +.++++..+++|+.++..+.+++... + -.++|++||..
T Consensus 79 ~~~~~~~~~~~~~~~~~lvnnag~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~m~~~~~~~g~Iv~isS~~ 158 (259)
T d1oaaa_ 79 LSAVRELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWALNLTSMLCLTSGTLNAFQDSPGLSKTVVNISSLC 158 (259)
T ss_dssp HHHHHHSCCCTTCCEEEEEECCCCCCCCSSCGGGCCCHHHHHHHHHHHTHHHHHHHHHHHHTSCCCTTCEEEEEEECCGG
T ss_pred HHHHHHhhhhccCceEEEEecccccccCCCCccccCCHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCccccccccccc
Confidence 52 2578999988321 11346678999999999999887653 2 24899999976
Q ss_pred ccccCCCCcCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhC-CCCceEEEEecCCcccCCCCC-----ChHHHHHHHHc
Q 047227 134 VVFDGVHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANG-TNGLLTCCIRPSSIFGPGDRL-----LVPSLVAAARA 207 (485)
Q Consensus 134 vy~~~~~~~~~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~-~~g~~~~ilRp~~v~Gp~~~~-----~~~~~~~~~~~ 207 (485)
.+. +......|+.+|+..+.+.+.++. ..|+++.++.||.+-.+.... .-+........
T Consensus 159 ~~~---------------~~~~~~~Y~asKaal~~lt~~la~e~~gIrVn~v~PG~i~T~~~~~~~~~~~~~~~~~~~~~ 223 (259)
T d1oaaa_ 159 ALQ---------------PYKGWGLYCAGKAARDMLYQVLAAEEPSVRVLSYAPGPLDNDMQQLARETSKDPELRSKLQK 223 (259)
T ss_dssp GTS---------------CCTTCHHHHHHHHHHHHHHHHHHHHCTTEEEEEEECCSBSSHHHHHHHHHCSCHHHHHHHHH
T ss_pred ccC---------------CCccchHHHHHHHHHHHHHHHHHhCCCCCEEEEEEcCCCCCHHHHHhhhcCCCHHHHHHHHh
Confidence 542 234567899999999999887764 468999999999987542100 00111111111
Q ss_pred CCCeEEecCCCceeecccHHHHHHHHHHHHH
Q 047227 208 GKSKFIIGDGNNVYDFTYVANVAHAHICAER 238 (485)
Q Consensus 208 g~~~~~~g~g~~~~~~i~v~D~a~a~~~~~~ 238 (485)
..+ ...+..++|+|++++.++.
T Consensus 224 ~~~---------~~r~~~p~evA~~i~~ll~ 245 (259)
T d1oaaa_ 224 LKS---------DGALVDCGTSAQKLLGLLQ 245 (259)
T ss_dssp HHH---------TTCSBCHHHHHHHHHHHHH
T ss_pred cCC---------CCCCCCHHHHHHHHHHHhh
Confidence 100 0124568999999988875
|
| >d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase sniffer species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.55 E-value=1.4e-13 Score=127.40 Aligned_cols=167 Identities=16% Similarity=0.075 Sum_probs=119.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHh---cCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc-
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIR---YDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ- 82 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~---~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~- 82 (485)
||+||||||++-||.++++.|++ +| ++|.+.+|..... ++ .........++.++.+|++|++++.++++
T Consensus 2 MKtilITGas~GIG~a~a~~l~~~a~~g-~~V~~~~r~~~~~----~~--~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~ 74 (248)
T d1snya_ 2 MNSILITGCNRGLGLGLVKALLNLPQPP-QHLFTTCRNREQA----KE--LEDLAKNHSNIHILEIDLRNFDAYDKLVAD 74 (248)
T ss_dssp CSEEEESCCSSHHHHHHHHHHHTSSSCC-SEEEEEESCTTSC----HH--HHHHHHHCTTEEEEECCTTCGGGHHHHHHH
T ss_pred cCEEEEeCCCCHHHHHHHHHHHHHHhCC-CEEEEEECCHHHH----HH--HHHHHhcCCcEEEEEEEeccHHHHHHHHhh
Confidence 57899999999999999999974 57 6899999875422 11 11111235689999999999876665542
Q ss_pred --------CCCEEEEcCCCCC--------CCCchhhhHHHHHHHHHHHHHHHHh----c-----------CCCEEEEecC
Q 047227 83 --------GAEVVFHMAAPNS--------SINNHKLHHSVNVEGTKNVIDACAE----L-----------KVKRLIYTSS 131 (485)
Q Consensus 83 --------~~d~Vih~aa~~~--------~~~~~~~~~~~nv~~t~~ll~a~~~----~-----------~v~r~V~~SS 131 (485)
+.|++||+||... ..++.+..+++|+.++..+.+++.. . +..++|.+||
T Consensus 75 i~~~~~~~~iDiLvnNAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~p~l~~~~~~~~~~~~~~~~g~ii~i~S 154 (248)
T d1snya_ 75 IEGVTKDQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVPIMLAKACLPLLKKAAKANESQPMGVGRAAIINMSS 154 (248)
T ss_dssp HHHHHGGGCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTSCSSTTTCEEEEECC
T ss_pred hHHHhhcCCcceEEeeccccccCcccccCCHHHHHHHHHhccccHHHHHHHHHHHHHHhhhccccccccccccccccccc
Confidence 3899999999321 1123566899999998888777542 1 3468999998
Q ss_pred ccccccCCCCcCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhC---CCCceEEEEecCCcccC
Q 047227 132 PSVVFDGVHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANG---TNGLLTCCIRPSSIFGP 192 (485)
Q Consensus 132 ~~vy~~~~~~~~~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~---~~g~~~~ilRp~~v~Gp 192 (485)
...... . .+......|+.||+....+.+.++. ..|+++.++.||.+--+
T Consensus 155 ~~g~~~--------~----~~~~~~~~Y~aSKaal~~lt~~la~e~~~~gI~vn~v~PG~v~T~ 206 (248)
T d1snya_ 155 ILGSIQ--------G----NTDGGMYAYRTSKSALNAATKSLSVDLYPQRIMCVSLHPGWVKTD 206 (248)
T ss_dssp GGGCST--------T----CCSCCCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEECCCSBCST
T ss_pred cccccC--------C----CCCCChHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCCcccCC
Confidence 543210 0 0123456899999999988877653 45899999999998544
|
| >d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative carbonyl reductase sniffer species: Caenorhabditis elegans [TaxId: 6239]
Probab=99.54 E-value=8.5e-14 Score=129.10 Aligned_cols=211 Identities=15% Similarity=0.076 Sum_probs=136.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCC-ceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc---
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDM-FSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ--- 82 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 82 (485)
+|+||||||++-||.++++.|+++|+ +.|.+..|..... ++ +.. ....++.++.+|++|.+++.++++
T Consensus 3 ~KtilITGassGIG~a~a~~la~~G~~~~Vi~~~R~~~~~----~~---l~~-~~~~~~~~~~~Dvs~~~~v~~~~~~i~ 74 (250)
T d1yo6a1 3 PGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKA----TE---LKS-IKDSRVHVLPLTVTCDKSLDTFVSKVG 74 (250)
T ss_dssp CSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGC----HH---HHT-CCCTTEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCCCEEEEEeCCHHHH----HH---HHH-hhCCceEEEEEecCCHHHHHHHHHHHH
Confidence 47999999999999999999999995 3677777764321 11 111 224579999999999988776653
Q ss_pred ------CCCEEEEcCCCCC--------CCCchhhhHHHHHHHHHHHHHHHHh----c-----------CCCEEEEecCcc
Q 047227 83 ------GAEVVFHMAAPNS--------SINNHKLHHSVNVEGTKNVIDACAE----L-----------KVKRLIYTSSPS 133 (485)
Q Consensus 83 ------~~d~Vih~aa~~~--------~~~~~~~~~~~nv~~t~~ll~a~~~----~-----------~v~r~V~~SS~~ 133 (485)
+.|++||+||... ..++++..+++|+.|+.++.+++.. . ...+++.+|+..
T Consensus 75 ~~~~~~~idilinnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~l~~~~~~~~~~~~~~~~~~~i~~s~~~ 154 (250)
T d1yo6a1 75 EIVGSDGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVVLLTQKLLPLLKNAASKESGDQLSVSRAAVITISSGL 154 (250)
T ss_dssp HHHGGGCCCEEEECCCCCCCBCTTSCCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHSSCSSCCCTTTCEEEEECCGG
T ss_pred HHhCCCCeEEEEEcCcccCCCCccccCCHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCCCCccccceecccccccccc
Confidence 2899999999321 1124567899999999988777542 1 124677777754
Q ss_pred ccccCCCCcCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhC---CCCceEEEEecCCcccCCCCCChHHHHHHHHcCCC
Q 047227 134 VVFDGVHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANG---TNGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKS 210 (485)
Q Consensus 134 vy~~~~~~~~~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~---~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~ 210 (485)
.+..... ...+..+...|+.||+....+.+.++. ..|+++.++.||.|--+ +. ++
T Consensus 155 ~~~~~~~--------~~~~~~~~~aY~aSKaal~~l~~~la~el~~~gI~v~~i~PG~v~T~--------m~-----~~- 212 (250)
T d1yo6a1 155 GSITDNT--------SGSAQFPVLAYRMSKAAINMFGRTLAVDLKDDNVLVVNFCPGWVQTN--------LG-----GK- 212 (250)
T ss_dssp GCSTTCC--------STTSSSCBHHHHHHHHHHHHHHHHHHHHTGGGTCEEEEEECCCC---------------------
T ss_pred ccccCCc--------ccccchhHHHHHHHHHHHHHHHHHHHHHhcccCeEEEEEecCCCCCC--------CC-----CC-
Confidence 4321100 001234556799999999998887764 35799999999987422 10 00
Q ss_pred eEEecCCCceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCCCcc
Q 047227 211 KFIIGDGNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMESIK 264 (485)
Q Consensus 211 ~~~~g~g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~~t 264 (485)
...+.+++.+..++..+..+... ..|+.|+ -+++|+.
T Consensus 213 ----------~~~~~~e~~a~~~~~~~~~~~~~------~sG~f~~-~~g~p~~ 249 (250)
T d1yo6a1 213 ----------NAALTVEQSTAELISSFNKLDNS------HNGRFFM-RNLKPYE 249 (250)
T ss_dssp ----------------HHHHHHHHHHHTTCCGG------GTTCEEE-TTEEECC
T ss_pred ----------CCCCCHHHHHHHHHHHHhcCCCC------CCeEEEC-CCCeeCC
Confidence 01234688888887776644332 5676554 3445543
|
| >d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.53 E-value=2.1e-13 Score=126.31 Aligned_cols=203 Identities=20% Similarity=0.137 Sum_probs=139.0
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc-
Q 047227 4 EENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ- 82 (485)
Q Consensus 4 ~~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~- 82 (485)
+.++|.+|||||++-||.++++.|.++| ++|.+.+|...... . ....+ .........|+.+.+.+++...
T Consensus 2 slkGKvalITGas~GIG~aia~~la~~G-~~V~~~~r~~~~~~----~---~~~~l-~~~~~~~~~~~~~~~~~~~~~~~ 72 (248)
T d2o23a1 2 SVKGLVAVITGGASGLGLATAERLVGQG-ASAVLLDLPNSGGE----A---QAKKL-GNNCVFAPADVTSEKDVQTALAL 72 (248)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECTTSSHH----H---HHHHH-CTTEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEeCChHHHH----H---HHHHh-CCCcccccccccccccccccccc
Confidence 4578999999999999999999999999 69999998754211 1 11111 3577888999998776654442
Q ss_pred ------CCCEEEEcCCCCC-------------CCCchhhhHHHHHHHHHHHHHHHHhc----------CCCEEEEecCcc
Q 047227 83 ------GAEVVFHMAAPNS-------------SINNHKLHHSVNVEGTKNVIDACAEL----------KVKRLIYTSSPS 133 (485)
Q Consensus 83 ------~~d~Vih~aa~~~-------------~~~~~~~~~~~nv~~t~~ll~a~~~~----------~v~r~V~~SS~~ 133 (485)
..|.+++.++... ..+++...+++|+.++.++.+++... +-.++|++||..
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~~~~~~G~Ii~isS~~ 152 (248)
T d2o23a1 73 AKGKFGRVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGTFNVIRLVAGEMGQNEPDQGGQRGVIINTASVA 152 (248)
T ss_dssp HHHHHSCCCEEEECCCCCCCCCSEETTTTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECCTH
T ss_pred cccccccccccccccccccCCCcccccccccchHHHHHHHHhHHHHHHHHHHHHhHHHHHHhhhhccCCceEEEEecchh
Confidence 4788888776211 12356678899999999998887542 234799999987
Q ss_pred ccccCCCCcCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhCC---CCceEEEEecCCcccCCCCCChHHHHHHHHcCCC
Q 047227 134 VVFDGVHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANGT---NGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKS 210 (485)
Q Consensus 134 vy~~~~~~~~~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~ 210 (485)
.+. +......|+.+|+..+.+.+.++.+ +|+++.++.||.+..+..............+..+
T Consensus 153 ~~~---------------~~~~~~~Y~asKaal~~lt~~la~e~~~~gIrvN~I~PG~i~T~~~~~~~~~~~~~~~~~~p 217 (248)
T d2o23a1 153 AFE---------------GQVGQAAYSASKGGIVGMTLPIARDLAPIGIRVMTIAPGLFGTPLLTSLPEKVCNFLASQVP 217 (248)
T ss_dssp HHH---------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCC----------CHHHHTCS
T ss_pred hcc---------------CCCCchHHHHHHHHHHHHHHHHHHHhcccCcceeeeccCceecchhhcCCHHHHHHHHhcCC
Confidence 653 2345678999999999998887643 6899999999998765433222222222222221
Q ss_pred eEEecCCCceeecccHHHHHHHHHHHHH
Q 047227 211 KFIIGDGNNVYDFTYVANVAHAHICAER 238 (485)
Q Consensus 211 ~~~~g~g~~~~~~i~v~D~a~a~~~~~~ 238 (485)
+. .-+..++|+|.++..+++
T Consensus 218 --l~------~R~g~peevA~~v~fL~s 237 (248)
T d2o23a1 218 --FP------SRLGDPAEYAHLVQAIIE 237 (248)
T ss_dssp --SS------CSCBCHHHHHHHHHHHHH
T ss_pred --CC------CCCcCHHHHHHHHHHHHh
Confidence 11 125678999999887764
|
| >d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.51 E-value=2e-13 Score=125.35 Aligned_cols=198 Identities=14% Similarity=0.102 Sum_probs=135.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHH-----
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQA----- 80 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~----- 80 (485)
++|+||||||+|-||+++++.|.++| ++|.++++..... ......+..|..+.++.+.+
T Consensus 1 egK~vlITGas~GIG~a~a~~l~~~G-~~V~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~ 64 (236)
T d1dhra_ 1 EARRVLVYGGRGALGSRCVQAFRARN-WWVASIDVVENEE---------------ASASVIVKMTDSFTEQADQVTAEVG 64 (236)
T ss_dssp CCCEEEEETTTSHHHHHHHHHHHTTT-CEEEEEESSCCTT---------------SSEEEECCCCSCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEeCCcccc---------------ccccceeecccCcHHHHHHHHHHHH
Confidence 46899999999999999999999999 6999888765411 11223344555554443322
Q ss_pred --hc--CCCEEEEcCCCC---C-----CCCchhhhHHHHHHHHHHHHHHHHhc--CCCEEEEecCccccccCCCCcCCCC
Q 047227 81 --LQ--GAEVVFHMAAPN---S-----SINNHKLHHSVNVEGTKNVIDACAEL--KVKRLIYTSSPSVVFDGVHGIINGN 146 (485)
Q Consensus 81 --~~--~~d~Vih~aa~~---~-----~~~~~~~~~~~nv~~t~~ll~a~~~~--~v~r~V~~SS~~vy~~~~~~~~~~~ 146 (485)
+. +.|++||+||.. . ..++++..+++|+.++.++..++... +-.++|++||.....
T Consensus 65 ~~~~~~~iD~lInnAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~G~Iv~isS~~~~~---------- 134 (236)
T d1dhra_ 65 KLLGDQKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLLTLAGAKAALD---------- 134 (236)
T ss_dssp HHHTTCCEEEEEECCCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGS----------
T ss_pred HHhCCCCceEEEECCcccccccchhcCCHHHHHHHHHHcchHHHHHHHHHHHhcccccceeEEccHHHcC----------
Confidence 22 379999999821 1 11345667899999999888887653 235899999976642
Q ss_pred CCCCCCCCCCchHHHHHHHHHHHHHHHhCC-----CCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCcee
Q 047227 147 EALPYPPKHNDFYSATKAEGEALVIKANGT-----NGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVY 221 (485)
Q Consensus 147 e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~-----~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~~ 221 (485)
+......|+.||+..+.+.+.++.+ .|+++.++.||.+.-| +.+..... ...-
T Consensus 135 -----~~~~~~~Y~asKaal~~lt~~la~El~~~~~gI~vn~v~PG~v~T~--------~~~~~~~~---------~~~~ 192 (236)
T d1dhra_ 135 -----GTPGMIGYGMAKGAVHQLCQSLAGKNSGMPSGAAAIAVLPVTLDTP--------MNRKSMPE---------ADFS 192 (236)
T ss_dssp -----CCTTBHHHHHHHHHHHHHHHHHTSTTSSCCTTCEEEEEEESCEECH--------HHHHHSTT---------SCGG
T ss_pred -----CccCCcccHHHHHHHHHHHHHHHHHhccCCCcEEEEEEEeccCcCC--------cchhhCcc---------chhh
Confidence 1234568999999999999998754 4799999999998644 12211111 1223
Q ss_pred ecccHHHHHHHHHHHHHHhccccchhhccCCcEEEe
Q 047227 222 DFTYVANVAHAHICAERALASEVTVAEKAAGQAYFV 257 (485)
Q Consensus 222 ~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv 257 (485)
.++..+|+|+.+..++... .....|....+
T Consensus 193 ~~~~pe~va~~~~~l~s~~------~~~i~G~~i~v 222 (236)
T d1dhra_ 193 SWTPLEFLVETFHDWITGN------KRPNSGSLIQV 222 (236)
T ss_dssp GSEEHHHHHHHHHHHHTTT------TCCCTTCEEEE
T ss_pred cCCCHHHHHHHHHHHhCCC------ccCCCCCeEEE
Confidence 4677899999998876421 12256766655
|
| >d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=99.48 E-value=7.8e-13 Score=121.62 Aligned_cols=206 Identities=20% Similarity=0.128 Sum_probs=143.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc----
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ---- 82 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~---- 82 (485)
.|++|||||++-||+++++.|.++| ++|.+.+|... ..+...+.+|+.+.....++..
T Consensus 1 DK~alITGas~GIG~aiA~~la~~G-a~V~i~~~~~~-----------------~~~~~~~~~d~~~~~~~~~~~~~~~~ 62 (241)
T d1uaya_ 1 ERSALVTGGASGLGRAAALALKARG-YRVVVLDLRRE-----------------GEDLIYVEGDVTREEDVRRAVARAQE 62 (241)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHT-CEEEEEESSCC-----------------SSSSEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCcc-----------------cccceEeeccccchhhhHHHHHhhhc
Confidence 3799999999999999999999999 69999988643 2346678899998876665543
Q ss_pred --CCCEEEEcCCCC-----------CCCCchhhhHHHHHHHHHHHHHHHHhc----------CCCEEEEecCccccccCC
Q 047227 83 --GAEVVFHMAAPN-----------SSINNHKLHHSVNVEGTKNVIDACAEL----------KVKRLIYTSSPSVVFDGV 139 (485)
Q Consensus 83 --~~d~Vih~aa~~-----------~~~~~~~~~~~~nv~~t~~ll~a~~~~----------~v~r~V~~SS~~vy~~~~ 139 (485)
+.+.+++.++.. ...+.++..+++|..+..++...+... +-.++|++||...+.
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~G~Ii~isS~~~~~--- 139 (241)
T d1uaya_ 63 EAPLFAVVSAAGVGLAEKILGKEGPHGLESFRRVLEVNLLGTFNVLRLAAWAMRENPPDAEGQRGVIVNTASVAAFE--- 139 (241)
T ss_dssp HSCEEEEEECCCCCCCCCSBCSSSBCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCCTTSCSEEEEEECCTHHHH---
T ss_pred cccccchhhhhhccccccccccccchhHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhcccCceeeeeecchhhcc---
Confidence 245555555410 111234567899999888887765432 235899999977653
Q ss_pred CCcCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhC---CCCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecC
Q 047227 140 HGIINGNEALPYPPKHNDFYSATKAEGEALVIKANG---TNGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGD 216 (485)
Q Consensus 140 ~~~~~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~---~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~ 216 (485)
+......|+.+|+..+.+.+.++. .+|+++.++.||.+-.+.................+ ..
T Consensus 140 ------------~~~~~~~Y~asKaal~~lt~~lA~ela~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~--~~-- 203 (241)
T d1uaya_ 140 ------------GQIGQAAYAASKGGVVALTLPAARELAGWGIRVVTVAPGLFDTPLLQGLPEKAKASLAAQVP--FP-- 203 (241)
T ss_dssp ------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSCSSHHHHTSCHHHHHHHHTTCC--SS--
T ss_pred ------------CCCCchhhHHHHHHHHHHHHHHHHHHhhcCCceeeecCCcccccccchhhhhHHHHHHhcCC--CC--
Confidence 134567899999999999888764 46899999999998655322222333333333322 11
Q ss_pred CCceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCC
Q 047227 217 GNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNME 261 (485)
Q Consensus 217 g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~ 261 (485)
.-+..++|+|.++..++. ..-..|+.+.|.+|-
T Consensus 204 ----~R~g~pedvA~~v~fL~s--------~~~iTG~~i~VDGG~ 236 (241)
T d1uaya_ 204 ----PRLGRPEEYAALVLHILE--------NPMLNGEVVRLDGAL 236 (241)
T ss_dssp ----CSCCCHHHHHHHHHHHHH--------CTTCCSCEEEESTTC
T ss_pred ----CCCcCHHHHHHHHHHHHh--------CCCCCCCEEEECCcc
Confidence 124568999999998865 223678999997764
|
| >d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.46 E-value=2.6e-13 Score=128.08 Aligned_cols=168 Identities=18% Similarity=0.107 Sum_probs=119.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccc-hhhhhh-hhcCCCeEEEEecCCCHHHHHHHhc---
Q 047227 8 RLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEE-QGILGE-ALRSGRAHYVSFDLRHKAQVLQALQ--- 82 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~-~~~~~~-~~~~~~v~~~~~Dl~d~~~l~~~~~--- 82 (485)
|.||||||++-||+++++.|.++| .+|..+.+..... +.... ...... .....++..+.+|++|++++.++++
T Consensus 3 kVvlITGassGIG~a~A~~la~~G-a~v~~v~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~ 80 (285)
T d1jtva_ 3 TVVLITGCSSGIGLHLAVRLASDP-SQSFKVYATLRDL-KTQGRLWEAARALACPPGSLETLQLDVRDSKSVAAARERVT 80 (285)
T ss_dssp EEEEESCCSSHHHHHHHHHHHTCT-TCCEEEEEEESCG-GGTHHHHHHHHHTTCCTTSEEEEECCTTCHHHHHHHHHTCT
T ss_pred CEEEEccCCCHHHHHHHHHHHHCC-CCeEEEEEecCCh-hhhHHHHHHHHHHhccCCceEEEeccccchHhhhhhhhhcc
Confidence 567999999999999999999999 4544443322111 01111 000111 1124578999999999999888764
Q ss_pred --CCCEEEEcCCCC-------CCCCchhhhHHHHHHHHHHHHHHH----HhcCCCEEEEecCccccccCCCCcCCCCCCC
Q 047227 83 --GAEVVFHMAAPN-------SSINNHKLHHSVNVEGTKNVIDAC----AELKVKRLIYTSSPSVVFDGVHGIINGNEAL 149 (485)
Q Consensus 83 --~~d~Vih~aa~~-------~~~~~~~~~~~~nv~~t~~ll~a~----~~~~v~r~V~~SS~~vy~~~~~~~~~~~e~~ 149 (485)
..|+++|+++.. .+.++++..+++|+.|+.++.+++ ++.+-.++|++||.....
T Consensus 81 ~g~idilvnnag~~~~~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~m~~~~~G~Iv~isS~~g~~------------- 147 (285)
T d1jtva_ 81 EGRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRGSGRVLVTGSVGGLM------------- 147 (285)
T ss_dssp TSCCSEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEEGGGTS-------------
T ss_pred ccchhhhhhcccccccccccchhHhhhhhhhhcchhHHHHHHHHHHHHHHHcCCCceEEEechhhcC-------------
Confidence 389999999922 233467788999999988887764 455667999999976542
Q ss_pred CCCCCCCchHHHHHHHHHHHHHHHhC---CCCceEEEEecCCcccC
Q 047227 150 PYPPKHNDFYSATKAEGEALVIKANG---TNGLLTCCIRPSSIFGP 192 (485)
Q Consensus 150 ~~~~~~~~~Y~~sK~~~E~~~~~~~~---~~g~~~~ilRp~~v~Gp 192 (485)
+......|+.+|+..+.+.+.++. .+|+++.++.||.+--+
T Consensus 148 --~~~~~~~Y~asKaal~~l~~~la~El~~~gIrVn~V~PG~v~T~ 191 (285)
T d1jtva_ 148 --GLPFNDVYCASKFALEGLCESLAVLLLPFGVHLSLIECGPVHTA 191 (285)
T ss_dssp --CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCC-
T ss_pred --CCCCchHHHHHHHHHHHHHHHHHHHhhccCcEEEEEecCCCCCh
Confidence 233456899999999998877664 36899999999998543
|
| >d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Escherichia coli [TaxId: 562]
Probab=99.44 E-value=2.6e-12 Score=119.42 Aligned_cols=221 Identities=14% Similarity=0.097 Sum_probs=149.2
Q ss_pred CCCCEEEEEcCCC--chHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc
Q 047227 5 ENERLCVVTGGRG--FAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ 82 (485)
Q Consensus 5 ~~~~~iLVtGgtG--~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~ 82 (485)
.++|++|||||+| -||+++++.|+++| ++|.+.+|.... ... ..+..........+..|..+..+..+.++
T Consensus 3 L~gK~~lITGass~~GIG~aiA~~l~~~G-~~V~i~~~~~~~----~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (258)
T d1qsga_ 3 LSGKRILVTGVASKLSIAYGIAQAMHREG-AELAFTYQNDKL----KGR--VEEFAAQLGSDIVLQCDVAEDASIDTMFA 75 (258)
T ss_dssp TTTCEEEECCCCSTTSHHHHHHHHHHHTT-CEEEEEESSTTT----HHH--HHHHHHHTTCCCEEECCTTCHHHHHHHHH
T ss_pred CCCCEEEEECCCCchhHHHHHHHHHHHcC-CEEEEEeCCHHH----HHH--HHHHHhhcCCcceeecccchHHHHHHHHH
Confidence 4689999999998 68999999999999 689999886431 111 01112224567888899999877666653
Q ss_pred -------CCCEEEEcCCCCCC------------CCchhhhHHHHHHHHHHHHHHHHhcC--CCEEEEecCccccccCCCC
Q 047227 83 -------GAEVVFHMAAPNSS------------INNHKLHHSVNVEGTKNVIDACAELK--VKRLIYTSSPSVVFDGVHG 141 (485)
Q Consensus 83 -------~~d~Vih~aa~~~~------------~~~~~~~~~~nv~~t~~ll~a~~~~~--v~r~V~~SS~~vy~~~~~~ 141 (485)
..|.+||+++.... .++......+|..+...+..++...- -+.+|++||.....
T Consensus 76 ~~~~~~~~~d~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ii~iss~~~~~----- 150 (258)
T d1qsga_ 76 ELGKVWPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAER----- 150 (258)
T ss_dssp HHHTTCSSEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGTS-----
T ss_pred HhhhcccccceEEEeecccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCCcEEEEecchhhcc-----
Confidence 37999999983211 11234466778888888888776542 34688888865431
Q ss_pred cCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhC---CCCceEEEEecCCcccCCCCCC--hHHHHHHHHcCCCeEEecC
Q 047227 142 IINGNEALPYPPKHNDFYSATKAEGEALVIKANG---TNGLLTCCIRPSSIFGPGDRLL--VPSLVAAARAGKSKFIIGD 216 (485)
Q Consensus 142 ~~~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~---~~g~~~~ilRp~~v~Gp~~~~~--~~~~~~~~~~g~~~~~~g~ 216 (485)
+......|+.+|+..+.+.+.++. .+|+++.+++||.+..+..... -........+..+
T Consensus 151 ----------~~~~~~~Y~~sKaal~~ltr~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~p------ 214 (258)
T d1qsga_ 151 ----------AIPNYNVMGLAKASLEANVRYMANAMGPEGVRVNAISAGPIRTLAASGIKDFRKMLAHCEAVTP------ 214 (258)
T ss_dssp ----------BCTTTTHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCCCCTTGGGSTTHHHHHHHHHHHST------
T ss_pred ----------CCCCcHHHHHHHHHHHHHHHHHHHHhCccCceeecccccccccccccccchhhhHHHHHHhCCC------
Confidence 123446799999999999887664 4689999999999986653322 1222333332222
Q ss_pred CCceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCCC
Q 047227 217 GNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMES 262 (485)
Q Consensus 217 g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~ 262 (485)
..-+..++|+|.++..++... ..-..|+.+.+.+|..
T Consensus 215 ---l~R~~~peeia~~v~fL~s~~------s~~itG~~i~vDGG~~ 251 (258)
T d1qsga_ 215 ---IRRTVTIEDVGNSAAFLCSDL------SAGISGEVVHVDGGFS 251 (258)
T ss_dssp ---TSSCCCHHHHHHHHHHHTSGG------GTTCCSCEEEESTTGG
T ss_pred ---CCCCcCHHHHHHHHHHHhCch------hcCccCceEEECcCHH
Confidence 122566899999998875421 2237889999988754
|
| >d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.44 E-value=1.5e-12 Score=119.26 Aligned_cols=199 Identities=17% Similarity=0.135 Sum_probs=133.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHH-------HH
Q 047227 8 RLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVL-------QA 80 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~-------~~ 80 (485)
.|||||||+|-||+++++.|.++| ++|.+++|...... .....+.+|..+.+... ..
T Consensus 3 gkVlITGas~GIG~aia~~l~~~G-~~V~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (235)
T d1ooea_ 3 GKVIVYGGKGALGSAILEFFKKNG-YTVLNIDLSANDQA---------------DSNILVDGNKNWTEQEQSILEQTASS 66 (235)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTT-EEEEEEESSCCTTS---------------SEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCchhcc---------------cccceeccccCchhHHHHHHHHHHHH
Confidence 589999999999999999999999 79999998754211 12233445665544322 22
Q ss_pred hc--CCCEEEEcCCCCC----C----CCchhhhHHHHHHHHHHHHHHHHhc--CCCEEEEecCccccccCCCCcCCCCCC
Q 047227 81 LQ--GAEVVFHMAAPNS----S----INNHKLHHSVNVEGTKNVIDACAEL--KVKRLIYTSSPSVVFDGVHGIINGNEA 148 (485)
Q Consensus 81 ~~--~~d~Vih~aa~~~----~----~~~~~~~~~~nv~~t~~ll~a~~~~--~v~r~V~~SS~~vy~~~~~~~~~~~e~ 148 (485)
++ +.|++||+||... . .+.++..+++|+.++..+.+++... +-.++|++||...+.
T Consensus 67 ~~~g~iD~linnAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~Iv~isS~~~~~------------ 134 (235)
T d1ooea_ 67 LQGSQVDGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPGGLLQLTGAAAAMG------------ 134 (235)
T ss_dssp HTTCCEEEEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGS------------
T ss_pred hcCCCeeEEEECCcccccccccccCcHHHHhhHhhhHHHHHHHHhhhcccccccceEEEEeccHHhcC------------
Confidence 22 3799999999211 1 1235567899999998888877654 125899999976542
Q ss_pred CCCCCCCCchHHHHHHHHHHHHHHHhCC-----CCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCceeec
Q 047227 149 LPYPPKHNDFYSATKAEGEALVIKANGT-----NGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDF 223 (485)
Q Consensus 149 ~~~~~~~~~~Y~~sK~~~E~~~~~~~~~-----~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~ 223 (485)
+......|+.+|+..+.+.+.++.+ .++++..+.|+.+--+ +.+..... .....+
T Consensus 135 ---~~~~~~~Y~asKaal~~l~~~la~e~~~~~~~i~v~~i~Pg~~~T~--------~~~~~~~~---------~~~~~~ 194 (235)
T d1ooea_ 135 ---PTPSMIGYGMAKAAVHHLTSSLAAKDSGLPDNSAVLTIMPVTLDTP--------MNRKWMPN---------ADHSSW 194 (235)
T ss_dssp ---CCTTBHHHHHHHHHHHHHHHHHHSTTSSCCTTCEEEEEEESCBCCH--------HHHHHSTT---------CCGGGC
T ss_pred ---CcccccchHHHHHHHHHHHHHHHHHhccCCCceEEEEEecCcCcCc--------chhhhCcC---------CccccC
Confidence 2234578999999999999988754 3678899999987532 22222111 123357
Q ss_pred ccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeC
Q 047227 224 TYVANVAHAHICAERALASEVTVAEKAAGQAYFVTN 259 (485)
Q Consensus 224 i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~ 259 (485)
+..+|+++.++..+.... .....|..+.+..
T Consensus 195 ~~~~~va~~~~~~l~~~~-----~~~~tG~~i~v~~ 225 (235)
T d1ooea_ 195 TPLSFISEHLLKWTTETS-----SRPSSGALLKITT 225 (235)
T ss_dssp BCHHHHHHHHHHHHHCGG-----GCCCTTCEEEEEE
T ss_pred CCHHHHHHHHHHHhcCcc-----ccCCCceEEEEEe
Confidence 789999999876544211 1125677777743
|
| >d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 11-beta-hydroxysteroid dehydrogenase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.38 E-value=1.4e-12 Score=122.04 Aligned_cols=195 Identities=15% Similarity=0.075 Sum_probs=135.1
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhh--hcCCCeEEEEecCCCHHHHHHHhc
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEA--LRSGRAHYVSFDLRHKAQVLQALQ 82 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~Dl~d~~~l~~~~~ 82 (485)
.++|++|||||++-||.++++.|.++| ++|.+++|....... ...+. .....+..+.+|+.+.+......+
T Consensus 12 L~GK~alITGassGIG~aiA~~la~~G-~~Vil~~r~~~~l~~------~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 84 (269)
T d1xu9a_ 12 LQGKKVIVTGASKGIGREMAYHLAKMG-AHVVVTARSKETLQK------VVSHCLELGAASAHYIAGTMEDMTFAEQFVA 84 (269)
T ss_dssp GTTCEEEESSCSSHHHHHHHHHHHHTT-CEEEEEESCHHHHHH------HHHHHHHHTCSEEEEEECCTTCHHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEECCHHHHHH------HHHHHhhhhcccchhhhhhhhhHHHHHHHHH
Confidence 467999999999999999999999999 799999987542111 01111 123567788899998876655442
Q ss_pred -------CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHHHhc---CCCEEEEecCccccccCCCCcCCC
Q 047227 83 -------GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDACAEL---KVKRLIYTSSPSVVFDGVHGIING 145 (485)
Q Consensus 83 -------~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~~~~---~v~r~V~~SS~~vy~~~~~~~~~~ 145 (485)
+.|+++++|+... +.++....+++|+.++..+.+++... +-.++|++||.+.+.
T Consensus 85 ~~~~~~g~~~~li~nag~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~lp~m~~~~G~ii~isS~~~~~--------- 155 (269)
T d1xu9a_ 85 QAGKLMGGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQSNGSIVVVSSLAGKV--------- 155 (269)
T ss_dssp HHHHHHTSCSEEEECCCCCCCCCCCCSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEGGGTS---------
T ss_pred HHHHHhCCccccccccccccccccccCCHHHhhhheeeehhhHHHHHHHHHHHHHhcCCcceEeccchhcC---------
Confidence 4899999998221 22345678899999988877665421 235899999876542
Q ss_pred CCCCCCCCCCCchHHHHHHHHHHHHHHHhC-----CCCceEEEEecCCcccCCCCCChHHHHHHHHcCCCeEEecCCCce
Q 047227 146 NEALPYPPKHNDFYSATKAEGEALVIKANG-----TNGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNV 220 (485)
Q Consensus 146 ~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~-----~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~ 220 (485)
+......|+.||+..+.+.+.++. ..++++..+.||.|--+ +......+. ..
T Consensus 156 ------~~p~~~~Y~asKaal~~~~~~La~El~~~~~~I~V~~v~PG~v~T~--------~~~~~~~~~---------~~ 212 (269)
T d1xu9a_ 156 ------AYPMVAAYSASKFALDGFFSSIRKEYSVSRVNVSITLCVLGLIDTE--------TAMKAVSGI---------VH 212 (269)
T ss_dssp ------CCTTCHHHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEEEECCBCCH--------HHHHHSCGG---------GG
T ss_pred ------CCCCchHHHHHHHHHHHHHHHHHHHhhhcCCCEEEEEEecCcCCCc--------HHHHhccCC---------cc
Confidence 233457899999999998887764 35789999999988422 222222221 12
Q ss_pred eecccHHHHHHHHHHHHH
Q 047227 221 YDFTYVANVAHAHICAER 238 (485)
Q Consensus 221 ~~~i~v~D~a~a~~~~~~ 238 (485)
......+++|+.++....
T Consensus 213 ~~~~~~e~~a~~i~~~~~ 230 (269)
T d1xu9a_ 213 MQAAPKEECALEIIKGGA 230 (269)
T ss_dssp GGCBCHHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHHhh
Confidence 234557889988877654
|
| >d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Leishmania major [TaxId: 5664]
Probab=99.38 E-value=6.9e-12 Score=118.14 Aligned_cols=221 Identities=15% Similarity=0.060 Sum_probs=139.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCC-----------------eEEEEec
Q 047227 8 RLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGR-----------------AHYVSFD 70 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~-----------------v~~~~~D 70 (485)
..+|||||++-||+++++.|.++| ++|.+.++......+...+ .+.. ..... +....+|
T Consensus 3 pVAlITGas~GIG~aiA~~la~~G-a~V~i~~~~~~~~~~~~~~--~l~~-~~~~~~~~~~~d~~~~~~~~~~~~~~~~d 78 (284)
T d1e7wa_ 3 PVALVTGAAKRLGRSIAEGLHAEG-YAVCLHYHRSAAEANALSA--TLNA-RRPNSAITVQADLSNVATAPVSGADGSAP 78 (284)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTT-CEEEEEESSCHHHHHHHHH--HHHH-HSTTCEEEEECCCSSSCBCCCC----CCC
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcC-CEEEEEeCCCHHHHHHHHH--HHHh-hcCCceEEEEeeccccccccccccccccc
Confidence 478999999999999999999999 6888877654311100000 0000 01122 2334567
Q ss_pred CCCHHHHHHHhc-------CCCEEEEcCCCCCC-------CCch--------------hhhHHHHHHHHHHHHHHHHhc-
Q 047227 71 LRHKAQVLQALQ-------GAEVVFHMAAPNSS-------INNH--------------KLHHSVNVEGTKNVIDACAEL- 121 (485)
Q Consensus 71 l~d~~~l~~~~~-------~~d~Vih~aa~~~~-------~~~~--------------~~~~~~nv~~t~~ll~a~~~~- 121 (485)
+++.+++.++++ +.|++||+||.... .+++ ...+.+|+.++..+.+++.+.
T Consensus 79 v~~~~~v~~~~~~~~~~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~ 158 (284)
T d1e7wa_ 79 VTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFAHRV 158 (284)
T ss_dssp BCHHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCCCC-------------HHHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhCCCCEEEecCCccCCCchhhCCHHHhhhhhhhHHHHHHHHHHHHhhheeeeeeeeccccchh
Confidence 888888877763 58999999993211 1111 125788999988888775431
Q ss_pred ---------CCCEEEEecCccccccCCCCcCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhC---CCCceEEEEecCCc
Q 047227 122 ---------KVKRLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANG---TNGLLTCCIRPSSI 189 (485)
Q Consensus 122 ---------~v~r~V~~SS~~vy~~~~~~~~~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~---~~g~~~~ilRp~~v 189 (485)
+..++|.+||..... +......|+.+|...+.+.+.++. .+|+++.++.||.+
T Consensus 159 ~~~~~~~~~~~~~ii~~~s~~~~~---------------~~~~~~~Y~asKaal~~lt~~lA~el~~~gIrvN~I~PG~t 223 (284)
T d1e7wa_ 159 AGTPAKHRGTNYSIINMVDAMTNQ---------------PLLGYTIYTMAKGALEGLTRSAALELAPLQIRVNGVGPGLS 223 (284)
T ss_dssp HTSCGGGSCSCEEEEEECCTTTTS---------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSB
T ss_pred hhhHHHhcCCCCcccccccccccC---------------CccceeeeccccccchhhhHHHHHHhCCccccccccccccc
Confidence 234677777754431 234557899999999999888764 46899999999963
Q ss_pred ccCCCCCChHHHHHHHHcCCCeEEecCCCceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCCCc
Q 047227 190 FGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMESI 263 (485)
Q Consensus 190 ~Gp~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~~ 263 (485)
--. ...-+.......+..+. . .-+...+|+|++++.++... ..-..|+.+.+.+|..+
T Consensus 224 ~~~--~~~~~~~~~~~~~~~pl--~------~R~~~peeiA~~v~fL~S~~------s~~itG~~i~VDGG~sl 281 (284)
T d1e7wa_ 224 VLV--DDMPPAVWEGHRSKVPL--Y------QRDSSAAEVSDVVIFLCSSK------AKYITGTCVKVDGGYSL 281 (284)
T ss_dssp CCG--GGSCHHHHHHHHTTCTT--T------TSCBCHHHHHHHHHHHHSGG------GTTCCSCEEEESTTGGG
T ss_pred ccc--ccCCHHHHHHHHhcCCC--C------CCCCCHHHHHHHHHHHhCch------hcCccCCeEEECcChhc
Confidence 221 12234444444444321 1 12556899999999876421 12267899999887544
|
| >d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Helicobacter pylori [TaxId: 210]
Probab=99.36 E-value=1.2e-11 Score=115.78 Aligned_cols=221 Identities=10% Similarity=0.049 Sum_probs=138.1
Q ss_pred CCCCEEEEEcCCC--chHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc
Q 047227 5 ENERLCVVTGGRG--FAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ 82 (485)
Q Consensus 5 ~~~~~iLVtGgtG--~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~ 82 (485)
.++|++|||||+| -||.++++.|.++| ++|.+.+|.... .+. ............++.+|+++.++..++++
T Consensus 3 L~gK~alITGaag~~GIG~AiA~~la~~G-a~V~i~~r~~~~----~~~--~~~l~~~~~~~~~~~~d~~~~~~~~~~~~ 75 (274)
T d2pd4a1 3 LKGKKGLIVGVANNKSIAYGIAQSCFNQG-ATLAFTYLNESL----EKR--VRPIAQELNSPYVYELDVSKEEHFKSLYN 75 (274)
T ss_dssp TTTCEEEEECCCSTTSHHHHHHHHHHTTT-CEEEEEESSTTT----HHH--HHHHHHHTTCCCEEECCTTCHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHHHHHCC-CEEEEEeCCHHH----HHH--HHHHHhhCCceeEeeecccchhhHHHHHH
Confidence 4689999999987 69999999999999 699999986431 111 01111124567788999999887776663
Q ss_pred -------CCCEEEEcCCCCCC--------CCchhhhHHHHHH---HHHHHHHHHHhc-CC-CEEEEecCccccccCCCCc
Q 047227 83 -------GAEVVFHMAAPNSS--------INNHKLHHSVNVE---GTKNVIDACAEL-KV-KRLIYTSSPSVVFDGVHGI 142 (485)
Q Consensus 83 -------~~d~Vih~aa~~~~--------~~~~~~~~~~nv~---~t~~ll~a~~~~-~v-~r~V~~SS~~vy~~~~~~~ 142 (485)
+.|++||+++.... ..........+.. ..........+. +. ..++.+|+.+...
T Consensus 76 ~~~~~~g~id~lV~nag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~~~~~~------ 149 (274)
T d2pd4a1 76 SVKKDLGSLDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISVYSLIELTNTLKPLLNNGASVLTLSYLGSTK------ 149 (274)
T ss_dssp HHHHHTSCEEEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGTS------
T ss_pred HHHHHcCCCCeEEeecccccccccccccccccchhhhhhhccccccccccccccccccccCcceeeeccccccc------
Confidence 48999999993221 1122222222222 222333333222 22 2355555544331
Q ss_pred CCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhC---CCCceEEEEecCCcccCCCCCCh--HHHHHHHHcCCCeEEecCC
Q 047227 143 INGNEALPYPPKHNDFYSATKAEGEALVIKANG---TNGLLTCCIRPSSIFGPGDRLLV--PSLVAAARAGKSKFIIGDG 217 (485)
Q Consensus 143 ~~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~---~~g~~~~ilRp~~v~Gp~~~~~~--~~~~~~~~~g~~~~~~g~g 217 (485)
+......|+.+|...+.+.+.++. ..|+++.++.||.+.-+...... ...........+
T Consensus 150 ---------~~~~~~~y~asK~al~~ltr~lA~e~~~~GIrvN~I~PG~v~T~~~~~~~~~~~~~~~~~~~~p------- 213 (274)
T d2pd4a1 150 ---------YMAHYNVMGLAKAALESAVRYLAVDLGKHHIRVNALSAGPIRTLASSGIADFRMILKWNEINAP------- 213 (274)
T ss_dssp ---------BCTTCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCTTGGGSTTHHHHHHHHHHHST-------
T ss_pred ---------ccccchhhhHHHHHHHHHHHhhHHHhcCcCceecccccCcccCccccccCchHHHHHHHhhhhh-------
Confidence 134456899999999998877553 46899999999998765433221 222222222222
Q ss_pred CceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCCC
Q 047227 218 NNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMES 262 (485)
Q Consensus 218 ~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~ 262 (485)
..-+..++|+|.++..++... ..-..|+.+.+.+|..
T Consensus 214 --~~r~~~pedIA~~v~fL~S~~------s~~itG~~i~vDGG~~ 250 (274)
T d2pd4a1 214 --LRKNVSLEEVGNAGMYLLSSL------SSGVSGEVHFVDAGYH 250 (274)
T ss_dssp --TSSCCCHHHHHHHHHHHHSGG------GTTCCSCEEEESTTGG
T ss_pred --ccCCcCHHHHHHHHHHHhChh------hCCCcCceEEECCChh
Confidence 124567999999999886521 1226889999988753
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.36 E-value=5.4e-13 Score=125.40 Aligned_cols=180 Identities=16% Similarity=0.056 Sum_probs=120.6
Q ss_pred CCEE-EEEcCCCchHHHHHHHHHhc-CCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc--
Q 047227 7 ERLC-VVTGGRGFAARHLVEMLIRY-DMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ-- 82 (485)
Q Consensus 7 ~~~i-LVtGgtG~iG~~l~~~Ll~~-G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 82 (485)
+|+| |||||++-||.++++.|.++ | .+|.+.+|+........++ +.. ...++.++.+|++|.+++.++++
T Consensus 2 g~rVAlVTGas~GIG~a~A~~la~~~g-~~Vi~~~r~~~~~~~~~~~---l~~--~~~~~~~~~~Dvs~~~sv~~~~~~~ 75 (275)
T d1wmaa1 2 GIHVALVTGGNKGIGLAIVRDLCRLFS-GDVVLTARDVTRGQAAVQQ---LQA--EGLSPRFHQLDIDDLQSIRALRDFL 75 (275)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHHSS-SEEEEEESSHHHHHHHHHH---HHH--TTCCCEEEECCTTCHHHHHHHHHHH
T ss_pred CCeEEEECCCCCHHHHHHHHHHHHhCC-CEEEEEECCHHHHHHHHHH---HHh--cCCcEEEEEEecCCHHHHHHHHHHH
Confidence 4666 99999999999999999986 7 6999999875432111111 111 24578999999999998876653
Q ss_pred -----CCCEEEEcCCCCC-------CCCchhhhHHHHHHHHHHHHHHHHhc--CCCEEEEecCccccccCCC-Cc-----
Q 047227 83 -----GAEVVFHMAAPNS-------SINNHKLHHSVNVEGTKNVIDACAEL--KVKRLIYTSSPSVVFDGVH-GI----- 142 (485)
Q Consensus 83 -----~~d~Vih~aa~~~-------~~~~~~~~~~~nv~~t~~ll~a~~~~--~v~r~V~~SS~~vy~~~~~-~~----- 142 (485)
+.|++||+||... ..++++..+++|+.|+..+.+++... .-.|+|.+||......... .+
T Consensus 76 ~~~~g~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivnisS~~~~~~~~~~~~y~~~k 155 (275)
T d1wmaa1 76 RKEYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSSIMSVRALKSCSPELQQK 155 (275)
T ss_dssp HHHHSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCHHHHHHHHTSCHHHHHH
T ss_pred HHhcCCcEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccceeccccccchhhhhh
Confidence 4899999999321 11245568899999999999888653 1248999999654311000 00
Q ss_pred ---CCC-----------------CCCCCCCCCCCchHHHHHHHHHHHHHHHhC-------CCCceEEEEecCCcccC
Q 047227 143 ---ING-----------------NEALPYPPKHNDFYSATKAEGEALVIKANG-------TNGLLTCCIRPSSIFGP 192 (485)
Q Consensus 143 ---~~~-----------------~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~-------~~g~~~~ilRp~~v~Gp 192 (485)
... ......+..+...|+.||.....+.+.++. ..++.+.++.||.|--+
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aY~~sK~a~~~~t~~la~~l~~~~~~~~I~vn~v~PG~v~T~ 232 (275)
T d1wmaa1 156 FRSETITEEELVGLMNKFVEDTKKGVHQKEGWPSSAYGVTKIGVTVLSRIHARKLSEQRKGDKILLNACCPGWVRTD 232 (275)
T ss_dssp HHCSSCCHHHHHHHHHHHHHHHHTTCTTTTTCCSCHHHHHHHHHHHHHHHHHHHHHHHCTTSCCEEEEEECCSBCST
T ss_pred hcccccchhhhccccccchhcccccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccCC
Confidence 000 000011234567899999998777654332 24899999999998543
|
| >d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]
Probab=99.31 E-value=5.3e-12 Score=117.96 Aligned_cols=223 Identities=8% Similarity=0.003 Sum_probs=138.6
Q ss_pred CCCCCEEEEEcCCC--chHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHh
Q 047227 4 EENERLCVVTGGRG--FAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQAL 81 (485)
Q Consensus 4 ~~~~~~iLVtGgtG--~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~ 81 (485)
-.++|++|||||+| -||.++++.|.++| ++|.+.+|....... ...+ ....+...+.+|++++++..+++
T Consensus 3 ~l~gK~~lItGaag~~GIG~aiA~~la~~G-a~Vil~~~~~~~~~~------~~~~-~~~~~~~~~~~dv~~~~~~~~~~ 74 (268)
T d2h7ma1 3 LLDGKRILVSGIITDSSIAFHIARVAQEQG-AQLVLTGFDRLRLIQ------RITD-RLPAKAPLLELDVQNEEHLASLA 74 (268)
T ss_dssp TTTTCEEEECCCSSTTCHHHHHHHHHHHTT-CEEEEEECSCHHHHH------HHHT-TSSSCCCEEECCTTCHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHcC-CEEEEEeCChHHHHH------HHHH-HcCCceeeEeeeccccccccccc
Confidence 35689999999765 49999999999999 699988876432100 0111 12456778999999987655543
Q ss_pred c----------CCCEEEEcCCCCCC------------CCchhhhHHHHHHHHHHHHHHHHhcC-CCEEEEecCccccccC
Q 047227 82 Q----------GAEVVFHMAAPNSS------------INNHKLHHSVNVEGTKNVIDACAELK-VKRLIYTSSPSVVFDG 138 (485)
Q Consensus 82 ~----------~~d~Vih~aa~~~~------------~~~~~~~~~~nv~~t~~ll~a~~~~~-v~r~V~~SS~~vy~~~ 138 (485)
+ ..|+++|+++.... ..+....+.+|.........++.... ....+.++|.....
T Consensus 75 ~~v~~~~~~~~~ld~~i~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~~~~~-- 152 (268)
T d2h7ma1 75 GRVTEAIGAGNKLDGVVHSIGFMPQTGMGINPFFDAPYADVSKGIHISAYSYASMAKALLPIMNPGGSIVGMDFDPSR-- 152 (268)
T ss_dssp HHHHHHHCTTCCEEEEEECCCCCCGGGSTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECCCSS--
T ss_pred chhhhccccCCCcceeeecccccCccccccccccccchhhhhhhhhhhhhHHHHHHHHHhhhcccccccccccccccc--
Confidence 2 26999999993210 11223345666666666666655443 22344444433221
Q ss_pred CCCcCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhC---CCCceEEEEecCCcccCC--------CCC----ChHHHHH
Q 047227 139 VHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANG---TNGLLTCCIRPSSIFGPG--------DRL----LVPSLVA 203 (485)
Q Consensus 139 ~~~~~~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~---~~g~~~~ilRp~~v~Gp~--------~~~----~~~~~~~ 203 (485)
+......|+.+|...+.+.+.++. .+|+++.++.||.+-.+. ... ....+..
T Consensus 153 -------------~~p~~~~y~~sK~a~~~ltr~lA~e~~~~gIrVN~V~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~ 219 (268)
T d2h7ma1 153 -------------AMPAYNWMTVAKSALESVNRFVAREAGKYGVRSNLVAAGPIRTLAMSAIVGGALGEEAGAQIQLLEE 219 (268)
T ss_dssp -------------CCTTTHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCHHHHHHHTTTTCHHHHHHHHHHHH
T ss_pred -------------cCcccchhhccccchhhccccchhhhhccCCcceEEecCCCCChhhhhhccchhhhhhccchHHHHH
Confidence 123456899999999999887664 468999999999886431 110 1111222
Q ss_pred HHHcCCCeEEecCCCceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCCCc
Q 047227 204 AARAGKSKFIIGDGNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMESI 263 (485)
Q Consensus 204 ~~~~g~~~~~~g~g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~~ 263 (485)
...+.-+. .+.+..++|+|+++..++... ..-..|+.+.|.+|...
T Consensus 220 ~~~~~~pl--------~rr~~~p~dva~~v~fL~Sd~------a~~iTG~~i~vDGG~~~ 265 (268)
T d2h7ma1 220 GWDQRAPI--------GWNMKDATPVAKTVCALLSDW------LPATTGDIIYADGGAHT 265 (268)
T ss_dssp HHHHHCTT--------CCCTTCCHHHHHHHHHHHSSS------CTTCCSEEEEESTTGGG
T ss_pred HHHhcCCC--------CCCCCCHHHHHHHHHHHhCch------hcCccCCEEEECcCccc
Confidence 22222211 133556899999999876411 12267899989887543
|
| >d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=99.23 E-value=1.1e-10 Score=110.45 Aligned_cols=231 Identities=9% Similarity=0.019 Sum_probs=140.9
Q ss_pred CCCCCCCCEEEEEcCCC--chHHHHHHHHHhcCCceEEEeecCCcccc-------CCccchhhhhhhhcCC--CeEEEEe
Q 047227 1 MSGEENERLCVVTGGRG--FAARHLVEMLIRYDMFSVRIADLSDSIAL-------EPHEEQGILGEALRSG--RAHYVSF 69 (485)
Q Consensus 1 M~~~~~~~~iLVtGgtG--~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~-------~~~~~~~~~~~~~~~~--~v~~~~~ 69 (485)
|+-..++|++|||||+| -||.++++.|.++| .+|.+.+|.+.... ................ ++..+..
T Consensus 2 ~~~~L~gK~alVTGass~~GIG~aiA~~la~~G-a~Vvi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (297)
T d1d7oa_ 2 LPIDLRGKRAFIAGIADDNGYGWAVAKSLAAAG-AEILVGTWVPALNIFETSLRRGKFDQSRVLPDGSLMEIKKVYPLDA 80 (297)
T ss_dssp CCCCCTTCEEEEECCSSSSSHHHHHHHHHHHTT-CEEEEEEEHHHHHHHHHHHHTTTTTGGGBCTTSSBCCEEEEEEECT
T ss_pred CCcCCCCCEEEEECCCCCchHHHHHHHHHHHCC-CEEEEEeCchhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhhhhhhh
Confidence 55567889999999987 79999999999999 79988887532100 0000000000000000 1111111
Q ss_pred ---------------------cCCCHHHHHH----HhcCCCEEEEcCCCCC---------CCCchhhhHHHHHHHHHHHH
Q 047227 70 ---------------------DLRHKAQVLQ----ALQGAEVVFHMAAPNS---------SINNHKLHHSVNVEGTKNVI 115 (485)
Q Consensus 70 ---------------------Dl~d~~~l~~----~~~~~d~Vih~aa~~~---------~~~~~~~~~~~nv~~t~~ll 115 (485)
|..+.+++.+ .+.+.|++||+||... +.+++...+++|+.++.++.
T Consensus 81 ~~~~~~~~~~dv~~~~~~~~~~~~~~~~~~~~~~~~~G~iDilVnnAg~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~ 160 (297)
T d1d7oa_ 81 VFDNPEDVPEDVKANKRYAGSSNWTVQEAAECVRQDFGSIDILVHSLANGPEVSKPLLETSRKGYLAAISASSYSFVSLL 160 (297)
T ss_dssp TCCSGGGSCHHHHTSHHHHHCCCCSHHHHHHHHHHHHSCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHH
T ss_pred hccccccchhhhhhhhhhhhccHHHHHHHHHHHHHHhCCCcccccccccccccccchhhhhcccccccccchhhhhhhhh
Confidence 1222222222 2346899999998321 22346678899999999999
Q ss_pred HHHHhcCC--CEEEEecCccccccCCCCcCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHh----CCCCceEEEEecCCc
Q 047227 116 DACAELKV--KRLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDFYSATKAEGEALVIKAN----GTNGLLTCCIRPSSI 189 (485)
Q Consensus 116 ~a~~~~~v--~r~V~~SS~~vy~~~~~~~~~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~----~~~g~~~~ilRp~~v 189 (485)
.++..... .+.+.+++.+.... .......|+.+|...+.+.+.++ .++|+++.++.||.+
T Consensus 161 ~~~~~~~~~~g~~~~~~~~~~~~~--------------~~~~~~~y~~aKaa~~~l~~~~a~e~~~~~gIrvN~I~PG~i 226 (297)
T d1d7oa_ 161 SHFLPIMNPGGASISLTYIASERI--------------IPGYGGGMSSAKAALESDTRVLAFEAGRKQNIRVNTISAGPL 226 (297)
T ss_dssp HHHGGGEEEEEEEEEEECGGGTSC--------------CTTCTTTHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCC
T ss_pred hHHHHHhhcCCcceeeeehhhccc--------------ccccccceecccccccccccccchhccccceEEecccccccc
Confidence 88876532 24555555443210 12344579999998888776543 235899999999999
Q ss_pred ccCCCCC--ChHHHHHHHHcCCCeEEecCCCceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCC
Q 047227 190 FGPGDRL--LVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNME 261 (485)
Q Consensus 190 ~Gp~~~~--~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~ 261 (485)
..+.... ....+.....+.-|. ..+...+|+|.+++.++... ..-..|+.+.+.+|.
T Consensus 227 ~T~~~~~~~~~~~~~~~~~~~~Pl---------gR~~~peevA~~v~fL~S~~------a~~itGq~i~vDGG~ 285 (297)
T d1d7oa_ 227 GSRAAKAIGFIDTMIEYSYNNAPI---------QKTLTADEVGNAAAFLVSPL------ASAITGATIYVDNGL 285 (297)
T ss_dssp BCCCSSCCSHHHHHHHHHHHHSSS---------CCCBCHHHHHHHHHHHTSGG------GTTCCSCEEEESTTG
T ss_pred cchhhhhccCCHHHHHHHHhCCCC---------CCCCCHHHHHHHHHHHhCch------hcCCcCceEEECcCH
Confidence 8775543 233444444443332 23566999999998875421 222678999888763
|
| >d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Trypanosoma cruzi [TaxId: 5693]
Probab=99.18 E-value=1.3e-09 Score=101.01 Aligned_cols=219 Identities=16% Similarity=0.041 Sum_probs=134.3
Q ss_pred EEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCC----HHHHHHHh---
Q 047227 9 LCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRH----KAQVLQAL--- 81 (485)
Q Consensus 9 ~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d----~~~l~~~~--- 81 (485)
..|||||++-||.++++.|+++| ++|.+.+|..........+ ............+..|..+ .+.+.+++
T Consensus 3 vAlVTGas~GIG~aia~~la~~G-~~Vvi~~r~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (266)
T d1mxha_ 3 AAVITGGARRIGHSIAVRLHQQG-FRVVVHYRHSEGAAQRLVA---ELNAARAGSAVLCKGDLSLSSSLLDCCEDIIDCS 78 (266)
T ss_dssp EEEETTCSSHHHHHHHHHHHHTT-CEEEEEESSCHHHHHHHHH---HHHHHSTTCEEEEECCCSSSTTHHHHHHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCchHHHHHHHH---HHHhhcCCceEEEecccccchhHHHHHHHHHHHH
Confidence 67999999999999999999999 6999999875421110000 0111123456667666654 33333332
Q ss_pred ----cCCCEEEEcCCCCCCC------------------CchhhhHHHHHHHHHHHHHHHHhc---------CCCEEEEec
Q 047227 82 ----QGAEVVFHMAAPNSSI------------------NNHKLHHSVNVEGTKNVIDACAEL---------KVKRLIYTS 130 (485)
Q Consensus 82 ----~~~d~Vih~aa~~~~~------------------~~~~~~~~~nv~~t~~ll~a~~~~---------~v~r~V~~S 130 (485)
.+.|++||+||..... ......+..|..+........... ....++.+|
T Consensus 79 ~~~~g~iDilvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (266)
T d1mxha_ 79 FRAFGRCDVLVNNASAYYPTPLLPGDDTNGAADAKPIDAQVAELFGSNAVAPLFLIRAFARRQGEGGAWRSRNLSVVNLC 158 (266)
T ss_dssp HHHHSCCCEEEECCCCCCCCCSCC-----------CHHHHHHHHHHHHTHHHHHHHHHHHHTC-------CCCEEEEEEC
T ss_pred HHHhCCCCEEEECCccCCCCcccccccccchhcccccccccccccccccccccchhhhhccccccccccccccccchhhh
Confidence 3599999999932110 012234455555555555444432 123455566
Q ss_pred CccccccCCCCcCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhC---CCCceEEEEecCCcccCCCCCChHHHHHHHHc
Q 047227 131 SPSVVFDGVHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANG---TNGLLTCCIRPSSIFGPGDRLLVPSLVAAARA 207 (485)
Q Consensus 131 S~~vy~~~~~~~~~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~---~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~ 207 (485)
+..... +......|+.||...+.+.+.++. .+|+++..+.||.+.-+... -........+
T Consensus 159 ~~~~~~---------------~~~~~~~Y~asKaal~~lt~~lA~e~~~~gIrVN~I~PG~i~t~~~~--~~~~~~~~~~ 221 (266)
T d1mxha_ 159 DAMTDL---------------PLPGFCVYTMAKHALGGLTRAAALELAPRHIRVNAVAPGLSLLPPAM--PQETQEEYRR 221 (266)
T ss_dssp CGGGGS---------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSCCSSS--CHHHHHHHHT
T ss_pred hccccc---------------cCcchhhhhhhHHHHhhhHHHHHHHhCccCcEEEEeccCcEeccccC--CHHHHHHHHh
Confidence 544321 234567899999999999887764 36899999999998755322 2334444444
Q ss_pred CCCeEEecCCCceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCCCC
Q 047227 208 GKSKFIIGDGNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNMES 262 (485)
Q Consensus 208 g~~~~~~g~g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~~~ 262 (485)
.-+. + +-+...+|+|.+++.++.... .-..|+.+.+.+|..
T Consensus 222 ~~pl---~-----r~~~~peeva~~v~fL~s~~s------~~itG~~i~vDGG~~ 262 (266)
T d1mxha_ 222 KVPL---G-----QSEASAAQIADAIAFLVSKDA------GYITGTTLKVDGGLI 262 (266)
T ss_dssp TCTT---T-----SCCBCHHHHHHHHHHHHSGGG------TTCCSCEEEESTTGG
T ss_pred cCCC---C-----CCCCCHHHHHHHHHHHhCchh------CCccCCeEEECccHh
Confidence 3221 1 224568999999998865211 126789999887643
|
| >d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha-hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=99.13 E-value=9.6e-10 Score=101.48 Aligned_cols=216 Identities=15% Similarity=0.018 Sum_probs=128.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHh-----
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQAL----- 81 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~----- 81 (485)
||.||||||++-||.++++.|.++| ++|.+.+|.... ...|+.+.+......
T Consensus 1 mkVvlITGas~GIG~aiA~~la~~G-a~V~~~~~~~~~----------------------~~~d~~~~~~~~~~~~~~~~ 57 (257)
T d1fjha_ 1 MSIIVISGCATGIGAATRKVLEAAG-HQIVGIDIRDAE----------------------VIADLSTAEGRKQAIADVLA 57 (257)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSSSS----------------------EECCTTSHHHHHHHHHHHHT
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECChHH----------------------HHHHhcCHHHHHHHHHHHHH
Confidence 4788999999999999999999999 699999876431 245777665443332
Q ss_pred ---cCCCEEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHH----hcCCCEEEEecCccccccCCCCcCCCC---C----
Q 047227 82 ---QGAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACA----ELKVKRLIYTSSPSVVFDGVHGIINGN---E---- 147 (485)
Q Consensus 82 ---~~~d~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~----~~~v~r~V~~SS~~vy~~~~~~~~~~~---e---- 147 (485)
...|+++++|+.............+|..+...+.+... +........+++.....-... ..+.. .
T Consensus 58 ~~~~~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~ 136 (257)
T d1fjha_ 58 KCSKGMDGLVLCAGLGPQTKVLGNVVSVNYFGATELMDAFLPALKKGHQPAAVVISSVASAHLAFD-KNPLALALEAGEE 136 (257)
T ss_dssp TCTTCCSEEEECCCCCTTCSSHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGGSSCGG-GCTTHHHHHHTCH
T ss_pred HhCCCCcEEEEcCCCCCcHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCcceeeeeccccchhhh-hhhhhhhccCCcE
Confidence 23899999999665556666677888887777665543 334445555555332210000 00000 0
Q ss_pred -------CCCCCCCCCchHHHHHHHHHHHHHHHhC---CCCceEEEEecCCcccCCCCCChHH--HHHHHHcCCCeEEec
Q 047227 148 -------ALPYPPKHNDFYSATKAEGEALVIKANG---TNGLLTCCIRPSSIFGPGDRLLVPS--LVAAARAGKSKFIIG 215 (485)
Q Consensus 148 -------~~~~~~~~~~~Y~~sK~~~E~~~~~~~~---~~g~~~~ilRp~~v~Gp~~~~~~~~--~~~~~~~g~~~~~~g 215 (485)
...-+..+...|+.+|+..+.+.+.++. .+|+++.++.||.+-.|.....+.. ......+
T Consensus 137 ~~i~s~~~~~~~~~~~~~Y~asKaal~~ltr~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~-------- 208 (257)
T d1fjha_ 137 AKARAIVEHAGEQGGNLAYAGSKNALTVAVRKRAAAWGEAGVRLNTIAPGATETPLLQAGLQDPRYGESIAK-------- 208 (257)
T ss_dssp HHHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHTHHHHHHTTCEEEEEEECC-----------------------------
T ss_pred EEEeeehhccCCCcchHHHHHHhhhhhccccccccccccccccccccccCCcCChhHHhhcCCHHHHHHHHh--------
Confidence 0000011234699999999999988764 3689999999999866532211110 1111111
Q ss_pred CCCceeecccHHHHHHHHHHHHHHhccccchhhccCCcEEEeeCC
Q 047227 216 DGNNVYDFTYVANVAHAHICAERALASEVTVAEKAAGQAYFVTNM 260 (485)
Q Consensus 216 ~g~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~~g~~ynv~~~ 260 (485)
...+..-+...+|+|.++..++... ..-..|+.+.+.+|
T Consensus 209 ~~~PlgR~g~p~eva~~v~fL~S~~------s~~itG~~i~vDGG 247 (257)
T d1fjha_ 209 FVPPMGRRAEPSEMASVIAFLMSPA------ASYVHGAQIVIDGG 247 (257)
T ss_dssp CCCSTTSCCCTHHHHHHHHHHTSGG------GTTCCSCEEEESTT
T ss_pred cCCCCCCCcCHHHHHHHHHHHhCch------hCCccCceEEeCCC
Confidence 1011223667899999998875421 22367889988765
|
| >d1uh5a_ c.2.1.2 (A:) Enoyl-ACP reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=99.11 E-value=6e-10 Score=106.91 Aligned_cols=169 Identities=9% Similarity=0.035 Sum_probs=106.0
Q ss_pred CCEEEEEc--CCCchHHHHHHHHHhcCCceEEEeecCCccccCC------ccchhhhhhhh-cCCCeEEEEe--------
Q 047227 7 ERLCVVTG--GRGFAARHLVEMLIRYDMFSVRIADLSDSIALEP------HEEQGILGEAL-RSGRAHYVSF-------- 69 (485)
Q Consensus 7 ~~~iLVtG--gtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~------~~~~~~~~~~~-~~~~v~~~~~-------- 69 (485)
+|.+|||| ++.-||..+++.|.++| .+|.+.++........ ........... .........+
T Consensus 2 ~kVAlITGaa~s~GIG~aiA~~la~~G-A~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (329)
T d1uh5a_ 2 EDICFIAGIGDTNGYGWGIAKELSKRN-VKIIFGIWPPVYNIFMKNYKNGKFDNDMIIDKDKKMNILDMLPFDASFDTAN 80 (329)
T ss_dssp CCEEEEECCSSSSSHHHHHHHHHHHTT-CEEEEEECGGGHHHHHHHHHTTTTTGGGEETTTEECCEEEEEECCTTCSSGG
T ss_pred CcEEEEeCCCCCChHHHHHHHHHHHcC-CEEEEEeCchhhhhhhHHHHHHhhhhHHHHHHHhhhhhhhcccccceehhhc
Confidence 57899999 55689999999999999 6898877653210000 00000000000 0111122222
Q ss_pred ------------cCCCHHHHHHH-------hcCCCEEEEcCCCCC---------CCCchhhhHHHHHHHHHHHHHHHHhc
Q 047227 70 ------------DLRHKAQVLQA-------LQGAEVVFHMAAPNS---------SINNHKLHHSVNVEGTKNVIDACAEL 121 (485)
Q Consensus 70 ------------Dl~d~~~l~~~-------~~~~d~Vih~aa~~~---------~~~~~~~~~~~nv~~t~~ll~a~~~~ 121 (485)
|+.+.++++++ +.+.|++||+|+... +.+++...+++|+.++..+.+++...
T Consensus 81 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~G~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~k~~~~~ 160 (329)
T d1uh5a_ 81 DIDEETKNNKRYNMLQNYTIEDVANLIHQKYGKINMLVHSLANAKEVQKDLLNTSRKGYLDALSKSSYSLISLCKYFVNI 160 (329)
T ss_dssp GCCHHHHTSHHHHTCCCCSHHHHHHHHHHHHCCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGG
T ss_pred ccchhhhhhhhhhhhhHHHHHHHHHHHHHHhCCCCeeccccccccccCCChhhhhhhhhhhhcccchhHHHHHHHHHHhh
Confidence 44443323322 335899999998321 22356778899999998888887764
Q ss_pred --CCCEEEEecCccccccCCCCcCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhC----CCCceEEEEecCCcc
Q 047227 122 --KVKRLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANG----TNGLLTCCIRPSSIF 190 (485)
Q Consensus 122 --~v~r~V~~SS~~vy~~~~~~~~~~~e~~~~~~~~~~~Y~~sK~~~E~~~~~~~~----~~g~~~~ilRp~~v~ 190 (485)
.-.++|.+||.+... .. ..+...|+.+|...|.+.+.++. ++|+++.++.||.+-
T Consensus 161 m~~~GsIv~iss~~~~~-----------~~---p~y~~~y~asKaal~~ltr~lA~Ela~~~gIRVNaI~PG~i~ 221 (329)
T d1uh5a_ 161 MKPQSSIISLTYHASQK-----------VV---PGYGGGMSSAKAALESDTRVLAYHLGRNYNIRINTISAGPLK 221 (329)
T ss_dssp EEEEEEEEEEECGGGTS-----------CC---TTCTTTHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCC
T ss_pred cccccccccceeehhcc-----------cc---cccchhhhhhhccccccchhhHHHHhcccCcEEEEEecCccc
Confidence 124788888865531 00 12345799999999999887764 358999999999773
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=98.85 E-value=1e-09 Score=96.56 Aligned_cols=83 Identities=17% Similarity=0.132 Sum_probs=67.0
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcC
Q 047227 4 EENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQG 83 (485)
Q Consensus 4 ~~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~ 83 (485)
+.++|+++||||+|.||+.+++.|.++| .+|.+++|....... .........++....+|+.|.+++.+++.+
T Consensus 20 ~l~gK~vlItGasgGIG~~ia~~la~~G-~~V~~~~r~~~~~~~------~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 92 (191)
T d1luaa1 20 SVKGKKAVVLAGTGPVGMRSAALLAGEG-AEVVLCGRKLDKAQA------AADSVNKRFKVNVTAAETADDASRAEAVKG 92 (191)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSHHHHHH------HHHHHHHHHTCCCEEEECCSHHHHHHHTTT
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhhc-cchhhcccchHHHHH------HHHHHHhccchhhhhhhcccHHHHHHHhcC
Confidence 4578999999999999999999999999 699999998643211 112222234567788999999999999999
Q ss_pred CCEEEEcCCC
Q 047227 84 AEVVFHMAAP 93 (485)
Q Consensus 84 ~d~Vih~aa~ 93 (485)
+|+|||+|+.
T Consensus 93 iDilin~Ag~ 102 (191)
T d1luaa1 93 AHFVFTAGAI 102 (191)
T ss_dssp CSEEEECCCT
T ss_pred cCeeeecCcc
Confidence 9999999984
|
| >d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.29 E-value=3e-06 Score=69.87 Aligned_cols=114 Identities=18% Similarity=0.164 Sum_probs=78.7
Q ss_pred EEEEEcCCCchHHHHHHHHHhcCC-ceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCCCEE
Q 047227 9 LCVVTGGRGFAARHLVEMLIRYDM-FSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGAEVV 87 (485)
Q Consensus 9 ~iLVtGgtG~iG~~l~~~Ll~~G~-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~d~V 87 (485)
||.|+||+|.+|++++..|..+|. .++.++|..+... ...+............-+ ......+.++++|+|
T Consensus 2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~~~--------~a~Dl~~~~~~~~~~~~~-~~~~~~~~~~~aDiv 72 (144)
T d1mlda1 2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPG--------VAADLSHIETRATVKGYL-GPEQLPDCLKGCDVV 72 (144)
T ss_dssp EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHH--------HHHHHTTSSSSCEEEEEE-SGGGHHHHHTTCSEE
T ss_pred eEEEECCCChHHHHHHHHHHhCCccceEEEEeccccch--------hhHHHhhhhhhcCCCeEE-cCCChHHHhCCCCEE
Confidence 799999999999999999998876 4788888753211 111111111111122222 233466788999999
Q ss_pred EEcCC-CCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecC
Q 047227 88 FHMAA-PNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSS 131 (485)
Q Consensus 88 ih~aa-~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS 131 (485)
|.+|| +.....+.....+.|+...+.+++.+.+++.+-++.+-|
T Consensus 73 Vitag~~~~~g~sR~~ll~~N~~i~~~i~~~i~~~~p~~iiivvt 117 (144)
T d1mlda1 73 VIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIIS 117 (144)
T ss_dssp EECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECS
T ss_pred EECCCcCCCCCCCcchHHHHHHHHHHHHHHHHHhcCCCeEEEEec
Confidence 99999 444445677889999999999999999998655554443
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=98.19 E-value=5.7e-06 Score=67.23 Aligned_cols=94 Identities=15% Similarity=0.171 Sum_probs=68.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHH-hcCCCE
Q 047227 8 RLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQA-LQGAEV 86 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~-~~~~d~ 86 (485)
|+|+|.|+ |.+|+.+++.|.++| +.|++++..+.. ....-..-+...+.||.+|++.+.++ ++++|+
T Consensus 1 M~IvI~G~-G~~G~~la~~L~~~g-~~v~vid~d~~~----------~~~~~~~~~~~vi~Gd~~~~~~l~~~~i~~a~~ 68 (132)
T d1lssa_ 1 MYIIIAGI-GRVGYTLAKSLSEKG-HDIVLIDIDKDI----------CKKASAEIDALVINGDCTKIKTLEDAGIEDADM 68 (132)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTT-CEEEEEESCHHH----------HHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSE
T ss_pred CEEEEECC-CHHHHHHHHHHHHCC-CCcceecCChhh----------hhhhhhhhhhhhccCcccchhhhhhcChhhhhh
Confidence 79999996 999999999999999 599999887541 11111123678999999999999888 578999
Q ss_pred EEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEE
Q 047227 87 VFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLI 127 (485)
Q Consensus 87 Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V 127 (485)
++-+.. + -+.|+.. ...+++.+++++|
T Consensus 69 vv~~t~------~----d~~N~~~----~~~~k~~~~~~iI 95 (132)
T d1lssa_ 69 YIAVTG------K----EEVNLMS----SLLAKSYGINKTI 95 (132)
T ss_dssp EEECCS------C----HHHHHHH----HHHHHHTTCCCEE
T ss_pred hcccCC------c----HHHHHHH----HHHHHHcCCceEE
Confidence 996543 1 1344433 3356677877666
|
| >d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: MJ0490, lactate/malate dehydrogenase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=97.91 E-value=2.7e-05 Score=63.97 Aligned_cols=117 Identities=12% Similarity=0.066 Sum_probs=77.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCC-ceEEEeecCCccccCCccchhhhhhhh--cCCCeEEEEecCCCHHHHHHHhcCC
Q 047227 8 RLCVVTGGRGFAARHLVEMLIRYDM-FSVRIADLSDSIALEPHEEQGILGEAL--RSGRAHYVSFDLRHKAQVLQALQGA 84 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~~G~-~~V~~~~r~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~Dl~d~~~l~~~~~~~ 84 (485)
|||.|+|++|.+|+.++..|..+|. .++.++|+............. +.+.. ....++....--.|. +.++++
T Consensus 1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~~~g~a~D-l~~~~~~~~~~~~~~~~~~~d~----~~l~~a 75 (145)
T d1hyea1 1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLRED-IYDALAGTRSDANIYVESDENL----RIIDES 75 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHH-HHHHHTTSCCCCEEEEEETTCG----GGGTTC
T ss_pred CEEEEECCCChHHHHHHHHHHhCCcccccccccchhhhHhhhccccc-chhcccccccCCccccCCcchH----HHhccc
Confidence 6899999999999999999998874 389999876431100000000 11111 122333322211222 466789
Q ss_pred CEEEEcCC-CCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEe
Q 047227 85 EVVFHMAA-PNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYT 129 (485)
Q Consensus 85 d~Vih~aa-~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~ 129 (485)
|+||-+|| +.....+....++.|+.-.+.+++...+.+.+.++.+
T Consensus 76 DvVVitAG~~~~~g~sR~dl~~~Na~iv~~i~~~i~~~~~~~iivV 121 (145)
T d1hyea1 76 DVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEICDTKIFVI 121 (145)
T ss_dssp SEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEC
T ss_pred eEEEEecccccCCCCChhhhhhhhHHHHHHHHHHHhccCCCeEEEE
Confidence 99999999 3344446778899999999999999999876655544
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=97.86 E-value=3.9e-05 Score=63.09 Aligned_cols=115 Identities=9% Similarity=0.074 Sum_probs=73.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCC-ceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCCC
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDM-FSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGAE 85 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~d 85 (485)
.|||.|+| +|++|+.++..|..+|. .+|.++|+....... ....+..............+|. +.++++|
T Consensus 5 ~~KI~IIG-aG~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g--~a~Dl~~a~~~~~~~~~~~~d~-------~~~~~ad 74 (146)
T d1ez4a1 5 HQKVVLVG-DGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKG--DALDLEDAQAFTAPKKIYSGEY-------SDCKDAD 74 (146)
T ss_dssp BCEEEEEC-CSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHH--HHHHHHGGGGGSCCCEEEECCG-------GGGTTCS
T ss_pred CCEEEEEC-CCHHHHHHHHHHHhcCCCcEEEEeecccchhHH--HHHHHhccccccCCceEeeccH-------HHhcccc
Confidence 57999999 59999999999999874 489999986532110 0001111111123344555553 2468899
Q ss_pred EEEEcCCC-CCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecC
Q 047227 86 VVFHMAAP-NSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSS 131 (485)
Q Consensus 86 ~Vih~aa~-~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS 131 (485)
+|+.+++. .....+.......|+.-.+.+.+.+.+.+.+-++.+-|
T Consensus 75 ivvitag~~~~~g~~r~~l~~~N~~i~~~~~~~i~~~~p~aivivvt 121 (146)
T d1ez4a1 75 LVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAA 121 (146)
T ss_dssp EEEECCCC----------CHHHHHHHHHHHHHHHHHTTCCSEEEECS
T ss_pred EEEEecccccCCCCCHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEeC
Confidence 99999993 33344566778999999999999999998765554443
|
| >d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Haloarcula marismortui [TaxId: 2238]
Probab=97.83 E-value=7.2e-05 Score=61.03 Aligned_cols=112 Identities=13% Similarity=0.030 Sum_probs=74.7
Q ss_pred EEEEEcCCCchHHHHHHHHHhcCCc-eEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCCCEE
Q 047227 9 LCVVTGGRGFAARHLVEMLIRYDMF-SVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGAEVV 87 (485)
Q Consensus 9 ~iLVtGgtG~iG~~l~~~Ll~~G~~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~d~V 87 (485)
||.|+|++|.+|+.++..|..+|.. ++.++|..............+..........+...+|. +.++++|+|
T Consensus 2 KV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~~~~~~~g~a~Dl~~~~~~~~~~~i~~~~~-------~~~~~aDiV 74 (142)
T d1o6za1 2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQGGY-------EDTAGSDVV 74 (142)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEECCG-------GGGTTCSEE
T ss_pred eEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCCcccccceeecchhhcccccCCceEeeCCH-------HHhhhcCEE
Confidence 7999999999999999999998754 68888864321110001111111111123444444442 235789999
Q ss_pred EEcCC-CCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEE
Q 047227 88 FHMAA-PNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLI 127 (485)
Q Consensus 88 ih~aa-~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V 127 (485)
+-.|+ +.....+....++.|+.-.+.+.+...+.+.+-++
T Consensus 75 vitaG~~~~~g~~R~dl~~~N~~I~~~i~~~i~~~~p~~i~ 115 (142)
T d1o6za1 75 VITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYIS 115 (142)
T ss_dssp EECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHTTCSCCEE
T ss_pred EEecccccccCCchhhHHHHHHHHHHHHHHHHHhcCCCceE
Confidence 99999 44444567788999999999999999999865444
|
| >d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=97.78 E-value=5.7e-05 Score=61.98 Aligned_cols=114 Identities=18% Similarity=0.102 Sum_probs=73.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHh-cCC-ceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCCC
Q 047227 8 RLCVVTGGRGFAARHLVEMLIR-YDM-FSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGAE 85 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~-~G~-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~d 85 (485)
|||.|+|++|.+|++++..|.. .+. .++.++|..+. .. .+... +.+.........+ .+-.+. +.++++|
T Consensus 1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~~-~~--g~a~D-l~h~~~~~~~~~~-~~~~~~----~~~~~aD 71 (145)
T d2cmda1 1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPV-TP--GVAVD-LSHIPTAVKIKGF-SGEDAT----PALEGAD 71 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSSTT-HH--HHHHH-HHTSCSSCEEEEE-CSSCCH----HHHTTCS
T ss_pred CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEeccccc-ch--hHHHH-HHCCccccCCcEE-EcCCCc----cccCCCC
Confidence 6999999999999999988754 332 48988886432 10 00000 1111111122222 222332 3578999
Q ss_pred EEEEcCC-CCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCE-EEEec
Q 047227 86 VVFHMAA-PNSSINNHKLHHSVNVEGTKNVIDACAELKVKR-LIYTS 130 (485)
Q Consensus 86 ~Vih~aa-~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r-~V~~S 130 (485)
+||-+|| +.....+.......|..-.+.+.+.+.+.+.+. ++.+|
T Consensus 72 vvvitaG~~~k~g~~R~dl~~~N~~i~~~v~~~i~~~~p~aivivvt 118 (145)
T d2cmda1 72 VVLISAGVRRKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIIT 118 (145)
T ss_dssp EEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECS
T ss_pred EEEECCCccCCCCcchhhHHHHHHHHHHHHHHHHHhhCCCcEEEEcc
Confidence 9999999 444555677889999999999999999988554 44444
|
| >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Probab=97.74 E-value=0.0002 Score=59.29 Aligned_cols=117 Identities=12% Similarity=0.067 Sum_probs=75.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhh--cCCCeEEEEecCCCHHHHHHHhcC
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEAL--RSGRAHYVSFDLRHKAQVLQALQG 83 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~Dl~d~~~l~~~~~~ 83 (485)
+.+||.|+|+ |.+|+.++..|...+..++.++|............ +.+.. .......... .+ .++++++
T Consensus 6 k~~KI~IIGa-G~VG~~lA~~l~~~~~~el~L~D~~~~~~~g~a~D---l~~~~~~~~~~~~~~~~--~~---~~~~~~~ 76 (154)
T d1pzga1 6 RRKKVAMIGS-GMIGGTMGYLCALRELADVVLYDVVKGMPEGKALD---LSHVTSVVDTNVSVRAE--YS---YEAALTG 76 (154)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHH---HHHHHHHTTCCCCEEEE--CS---HHHHHTT
T ss_pred CCCcEEEECC-CHHHHHHHHHHHhCCCceEEEEEeccccchhHHHH---HhhhccccCCeeEEecc--Cc---hhhhhcC
Confidence 4579999996 99999999888888866899998765421110000 11111 1111112111 12 3567789
Q ss_pred CCEEEEcCCCCCCC------CchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecC
Q 047227 84 AEVVFHMAAPNSSI------NNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSS 131 (485)
Q Consensus 84 ~d~Vih~aa~~~~~------~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS 131 (485)
+|+|+-.++..... .........|+.-.+.+++.+.+.+.+-++.+-|
T Consensus 77 adiVvitag~~~~~g~~~~~~tR~~l~~~n~~iv~~i~~~i~~~~p~aiviivs 130 (154)
T d1pzga1 77 ADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVT 130 (154)
T ss_dssp CSEEEECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECC
T ss_pred CCeEEEecccccCCCCCCcccchhhhhhhhHHHHHHHHHHHHhcCCCcEEEEeC
Confidence 99999999833221 2556778999999999999999998765555444
|
| >d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=97.72 E-value=0.00017 Score=59.79 Aligned_cols=118 Identities=14% Similarity=0.058 Sum_probs=72.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCc------eEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHH
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMF------SVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQA 80 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~------~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~ 80 (485)
+|||.|+||+|++|++++..|...+.. ...+++.... .....................+...-. ..+.
T Consensus 4 p~KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 77 (154)
T d1y7ta1 4 PVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQA--MKALEGVVMELEDCAFPLLAGLEATDD----PKVA 77 (154)
T ss_dssp CEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGG--HHHHHHHHHHHHTTTCTTEEEEEEESC----HHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHhccccccccchhHhHhccccc--hhhHcCchhhhhccccccccccccCCc----hhhh
Confidence 479999999999999999999887532 1222222111 000000000011111233444444322 3467
Q ss_pred hcCCCEEEEcCC-CCCCCCchhhhHHHHHHHHHHHHHHHHhcCC--CEEEEec
Q 047227 81 LQGAEVVFHMAA-PNSSINNHKLHHSVNVEGTKNVIDACAELKV--KRLIYTS 130 (485)
Q Consensus 81 ~~~~d~Vih~aa-~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v--~r~V~~S 130 (485)
++++|+||-++| +.....+....+..|+.-.+.+.+.+.+... ..++.+|
T Consensus 78 ~~~advViitaG~~~~pg~~r~dl~~~N~~i~~~~~~~i~k~a~~~~~vivvs 130 (154)
T d1y7ta1 78 FKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVG 130 (154)
T ss_dssp TTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECS
T ss_pred cccccEEEeecCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEec
Confidence 899999999999 4445556778889999999999999998642 2454445
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=97.65 E-value=0.0001 Score=59.61 Aligned_cols=71 Identities=21% Similarity=0.212 Sum_probs=56.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHH-hcCCCE
Q 047227 8 RLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQA-LQGAEV 86 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~-~~~~d~ 86 (485)
|+++|.| .|.+|+.+++.|.++| +.|++++..+.. ...+...+...+.+|.+|++.+.++ ++++|+
T Consensus 1 k~~iIiG-~G~~G~~la~~L~~~g-~~vvvid~d~~~-----------~~~~~~~~~~~~~gd~~~~~~l~~a~i~~a~~ 67 (134)
T d2hmva1 1 KQFAVIG-LGRFGGSIVKELHRMG-HEVLAVDINEEK-----------VNAYASYATHAVIANATEENELLSLGIRNFEY 67 (134)
T ss_dssp CCEEEEC-CSHHHHHHHHHHHHTT-CCCEEEESCHHH-----------HHHTTTTCSEEEECCTTCTTHHHHHTGGGCSE
T ss_pred CEEEEEC-CCHHHHHHHHHHHHCC-CeEEEecCcHHH-----------HHHHHHhCCcceeeecccchhhhccCCccccE
Confidence 4688886 5999999999999999 589999887542 2223345678889999999999887 678998
Q ss_pred EEEcC
Q 047227 87 VFHMA 91 (485)
Q Consensus 87 Vih~a 91 (485)
||-..
T Consensus 68 vi~~~ 72 (134)
T d2hmva1 68 VIVAI 72 (134)
T ss_dssp EEECC
T ss_pred EEEEc
Confidence 88554
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.63 E-value=0.00018 Score=59.18 Aligned_cols=111 Identities=14% Similarity=0.167 Sum_probs=75.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCC-ceEEEeecCCccccCCccchhhhhhh--hcCCCeEEEEecCCCHHHHHHHhc
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDM-FSVRIADLSDSIALEPHEEQGILGEA--LRSGRAHYVSFDLRHKAQVLQALQ 82 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~-~~V~~~~r~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~Dl~d~~~l~~~~~ 82 (485)
.++||.|+|+ |.+|++++..|..+|. .++.++|+.+..... .... +.+. +....+.....|. +.++
T Consensus 5 ~~~KI~IiGa-G~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g--~a~D-l~~~~~~~~~~~~~~~~d~-------~~l~ 73 (148)
T d1ldna1 5 GGARVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESKAIG--DAMD-FNHGKVFAPKPVDIWHGDY-------DDCR 73 (148)
T ss_dssp TSCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHH--HHHH-HHHHTTSSSSCCEEEECCG-------GGTT
T ss_pred CCCeEEEECc-CHHHHHHHHHHHhcCCCceEEEEeeccccccc--hhcc-HhhCccccCCCeEEEECCH-------HHhc
Confidence 4579999995 9999999999999875 379999876542110 0000 1111 1123344444442 4578
Q ss_pred CCCEEEEcCC-CCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEE
Q 047227 83 GAEVVFHMAA-PNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLI 127 (485)
Q Consensus 83 ~~d~Vih~aa-~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V 127 (485)
++|+|+..++ +.............|+.-.+.+.+...+++.+-++
T Consensus 74 daDvvvitag~~~~~~~~R~dl~~~N~~i~~~i~~~i~~~~p~a~~ 119 (148)
T d1ldna1 74 DADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLF 119 (148)
T ss_dssp TCSEEEECCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHHTCCSEE
T ss_pred cceeEEEecccccccCcchhHHHHHHHHHHHHHHHHHHhhCCCceE
Confidence 8999999999 44444566778899999999999999998854443
|
| >d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]
Probab=97.63 E-value=0.00019 Score=60.77 Aligned_cols=118 Identities=13% Similarity=0.070 Sum_probs=73.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCC---c---eEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHH
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDM---F---SVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQA 80 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~---~---~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~ 80 (485)
..||.||||+|.||++++..|.+.+. . .+++++...... ..+...+-......+....+..- .+ ..+.
T Consensus 24 ~~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~~~~--~l~g~~mdl~d~a~~~~~~~~~~-~~---~~~~ 97 (175)
T d7mdha1 24 LVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQ--ALEGVAMELEDSLYPLLREVSIG-ID---PYEV 97 (175)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHH--HHHHHHHHHHTTTCTTEEEEEEE-SC---HHHH
T ss_pred CcEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCccccc--hhcchhhhhcccccccccCcccc-cc---chhh
Confidence 34899999999999999999886421 1 455555433211 00000000011111223222221 12 4578
Q ss_pred hcCCCEEEEcCC-CCCCCCchhhhHHHHHHHHHHHHHHHHhcCC--CEEEEec
Q 047227 81 LQGAEVVFHMAA-PNSSINNHKLHHSVNVEGTKNVIDACAELKV--KRLIYTS 130 (485)
Q Consensus 81 ~~~~d~Vih~aa-~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v--~r~V~~S 130 (485)
++++|+||-.+| +..........+..|+.-.+.+.+++.+... .+++.+|
T Consensus 98 ~~~aDvVvi~ag~~rkpg~tR~Dll~~N~~I~k~~~~~i~~~a~~~~~vlvv~ 150 (175)
T d7mdha1 98 FEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVG 150 (175)
T ss_dssp TTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECS
T ss_pred ccCCceEEEeeccCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEec
Confidence 899999999999 5555567788899999999999999999642 2455554
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=97.52 E-value=0.0001 Score=62.51 Aligned_cols=75 Identities=17% Similarity=0.278 Sum_probs=55.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCCCE
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGAEV 86 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~d~ 86 (485)
.|+|+|.|+ |++|++++++|.++|| +|++++|....... +.. ..+.......+..+.....+.+...|.
T Consensus 2 ~K~IliiGa-G~~G~~~a~~L~~~g~-~V~v~dr~~~~a~~-------l~~--~~~~~~~~~~~~~~~~~~~~~i~~~~~ 70 (182)
T d1e5qa1 2 TKSVLMLGS-GFVTRPTLDVLTDSGI-KVTVACRTLESAKK-------LSA--GVQHSTPISLDVNDDAALDAEVAKHDL 70 (182)
T ss_dssp CCEEEEECC-STTHHHHHHHHHTTTC-EEEEEESCHHHHHH-------HHT--TCTTEEEEECCTTCHHHHHHHHTTSSE
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCC-EEEEEECChHHHHH-------HHh--cccccccccccccchhhhHhhhhccce
Confidence 379999985 9999999999999995 99999998653211 111 123455556677788888888889999
Q ss_pred EEEcCC
Q 047227 87 VFHMAA 92 (485)
Q Consensus 87 Vih~aa 92 (485)
++.+..
T Consensus 71 ~i~~~~ 76 (182)
T d1e5qa1 71 VISLIP 76 (182)
T ss_dssp EEECSC
T ss_pred eEeecc
Confidence 887653
|
| >d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Probab=97.51 E-value=0.00047 Score=56.18 Aligned_cols=113 Identities=12% Similarity=0.063 Sum_probs=75.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCC-ceEEEeecCCccccCCccchhhhh-hhhcCCCeEEEEecCCCHHHHHHHhcCCC
Q 047227 8 RLCVVTGGRGFAARHLVEMLIRYDM-FSVRIADLSDSIALEPHEEQGILG-EALRSGRAHYVSFDLRHKAQVLQALQGAE 85 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~~G~-~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~Dl~d~~~l~~~~~~~d 85 (485)
|||.|+|+ |.+|+.++..|...|. .++.++|......... ...... ........+....+ |. +.++++|
T Consensus 1 mKI~IIGa-G~VG~~la~~l~~~~l~~el~L~Di~~~~~~~~--~~d~~~~~~~~~~~~~i~~~~--~~----~~~~dad 71 (142)
T d1guza1 1 MKITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGK--ALDMYESGPVGLFDTKVTGSN--DY----ADTANSD 71 (142)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHH--HHHHHTTHHHHTCCCEEEEES--CG----GGGTTCS
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCCCceEEEeccccccchhh--hhhhhcccchhcccceEEecC--CH----HHhcCCe
Confidence 68999995 9999999999998874 3899999775422110 000000 00112233443322 22 3468899
Q ss_pred EEEEcCC-CCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEe
Q 047227 86 VVFHMAA-PNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYT 129 (485)
Q Consensus 86 ~Vih~aa-~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~ 129 (485)
+|+-.+| +.....+.......|+.-.+.+++.+.+.+.+-++.+
T Consensus 72 vvvitag~~~~~g~~r~~l~~~N~~i~~~i~~~i~~~~p~aiviv 116 (142)
T d1guza1 72 IVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIV 116 (142)
T ss_dssp EEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEEE
T ss_pred EEEEEEecCCCCCCchHHHHHHHHHHHHHHHHHhhccCCCeEEEE
Confidence 9999999 4444456677889999999999999999876544443
|
| >d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=97.48 E-value=0.00048 Score=56.21 Aligned_cols=98 Identities=13% Similarity=0.073 Sum_probs=56.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCc---eEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcC
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMF---SVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQG 83 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~---~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~ 83 (485)
|++|.|+||||++|+.+++.|+++..+ +++...++++........ .. .....++.+.+ .+++
T Consensus 1 MkkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~g~~~~~~---------~~--~~~~~~~~~~~----~~~~ 65 (146)
T d1t4ba1 1 MQNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAAPSFG---------GT--TGTLQDAFDLE----ALKA 65 (146)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBCCGGG---------TC--CCBCEETTCHH----HHHT
T ss_pred CcEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeecccccccccccc---------CC--ceeeecccchh----hhhc
Confidence 478999999999999999988876322 566555544322111110 11 11222344443 3578
Q ss_pred CCEEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCcccc
Q 047227 84 AEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVV 135 (485)
Q Consensus 84 ~d~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy 135 (485)
+|+||-+++ ..-+..+...+.+.|.+-+ .++..+.|
T Consensus 66 ~DivF~a~~---------------~~~s~~~~~~~~~~g~~~~-VID~Ss~f 101 (146)
T d1t4ba1 66 LDIIVTCQG---------------GDYTNEIYPKLRESGWQGY-WIDAASSL 101 (146)
T ss_dssp CSEEEECSC---------------HHHHHHHHHHHHHTTCCCE-EEECSSTT
T ss_pred CcEEEEecC---------------chHHHHhhHHHHhcCCCee-cccCCccc
Confidence 999998775 1123456666777776423 33333444
|
| >d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Probab=97.48 E-value=0.00042 Score=56.40 Aligned_cols=109 Identities=15% Similarity=0.136 Sum_probs=69.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCc-eEEEeecCCccccCCccchhhhhhhh-cCCCeEEEEecCCCHHHHHHHhcCCC
Q 047227 8 RLCVVTGGRGFAARHLVEMLIRYDMF-SVRIADLSDSIALEPHEEQGILGEAL-RSGRAHYVSFDLRHKAQVLQALQGAE 85 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~~G~~-~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~~~d 85 (485)
+||.|+|+ |.+|+.++..|+.+|.. ++.++|+....... +... +.+.. .........+| .+.++++|
T Consensus 2 ~KI~IIGa-G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~g--~a~D-l~~~~~~~~~~~~~~~~-------~~~~~~ad 70 (142)
T d1y6ja1 2 SKVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIG--EAMD-INHGLPFMGQMSLYAGD-------YSDVKDCD 70 (142)
T ss_dssp CCEEEECC-SHHHHHHHHHHHHTTCSSEEEEECCC---CCH--HHHH-HTTSCCCTTCEEEC--C-------GGGGTTCS
T ss_pred CeEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeccCCccce--eeee-eccCcccCCCeeEeeCc-------HHHhCCCc
Confidence 57999996 99999999999998753 79999977642211 1100 11111 11223332222 23578899
Q ss_pred EEEEcCCC-CCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEE
Q 047227 86 VVFHMAAP-NSSINNHKLHHSVNVEGTKNVIDACAELKVKRLI 127 (485)
Q Consensus 86 ~Vih~aa~-~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V 127 (485)
+|+-.|+. .....+.......|+.-.+.+++.+.+++.+-++
T Consensus 71 ivvitag~~~~~~~~r~~l~~~N~~i~~~i~~~i~~~~p~ai~ 113 (142)
T d1y6ja1 71 VIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVI 113 (142)
T ss_dssp EEEECCCC------CHHHHHHHHHHHHHHHHHHHHHHCCSCEE
T ss_pred eEEEecccccCcCcchhHHhhHHHHHHHHHHHHhhccCCCceE
Confidence 99999993 3344566778899999999999999998865444
|
| >d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=97.45 E-value=0.00049 Score=55.85 Aligned_cols=113 Identities=13% Similarity=0.089 Sum_probs=75.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCC-ceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCCCE
Q 047227 8 RLCVVTGGRGFAARHLVEMLIRYDM-FSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGAEV 86 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~~G~-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~d~ 86 (485)
|||.|+|+ |.+|+.++..|+.++. .++.++|........ +...+..............+| . +.++++|+
T Consensus 1 mKI~IIGa-G~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g--~~~Dl~~~~~~~~~~~~~~~~---~----~~~~~adi 70 (140)
T d1a5za1 1 MKIGIVGL-GRVGSSTAFALLMKGFAREMVLIDVDKKRAEG--DALDLIHGTPFTRRANIYAGD---Y----ADLKGSDV 70 (140)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHH--HHHHHHHHGGGSCCCEEEECC---G----GGGTTCSE
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCCCCEEEEEecccccccc--hhccccccccccccccccCCc---H----HHhcCCCE
Confidence 68999995 9999999998988875 379999876542211 111111111112344444433 2 34688999
Q ss_pred EEEcCCC-CCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEec
Q 047227 87 VFHMAAP-NSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTS 130 (485)
Q Consensus 87 Vih~aa~-~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~S 130 (485)
|+-+|+. .............|+.-.+.+.+...+.+.+-++.+-
T Consensus 71 vvitag~~~~~g~~r~dl~~~N~~I~~~i~~~i~~~~p~aivivv 115 (140)
T d1a5za1 71 VIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVV 115 (140)
T ss_dssp EEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEC
T ss_pred EEEecccccCCCcchhhhhccccchHHHHHHHHHhcCCCcEEEEe
Confidence 9999994 3444556678899999999999999998865555443
|
| >d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.33 E-value=0.00041 Score=56.48 Aligned_cols=114 Identities=14% Similarity=0.065 Sum_probs=75.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCC-ceEEEeecCCccccCCccchhhhhhhhc--CCCeEEEEecCCCHHHHHHHhcCC
Q 047227 8 RLCVVTGGRGFAARHLVEMLIRYDM-FSVRIADLSDSIALEPHEEQGILGEALR--SGRAHYVSFDLRHKAQVLQALQGA 84 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~~G~-~~V~~~~r~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~Dl~d~~~l~~~~~~~ 84 (485)
|||.|+|+ |.+|++++..|..+|. .++.++|........ +... +.+... ......... .|. +.++++
T Consensus 1 MKI~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g--~alD-l~~~~~~~~~~~~i~~~--~d~----~~~~~a 70 (142)
T d1ojua1 1 MKLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVG--EAMD-LAHAAAGIDKYPKIVGG--ADY----SLLKGS 70 (142)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHH--HHHH-HHHHHHTTTCCCEEEEE--SCG----GGGTTC
T ss_pred CEEEEECc-CHHHHHHHHHHHhcCcCceEEEEecccchhhH--HHHH-HhhhccccCCCCccccC--CCH----HHhccc
Confidence 78999995 9999999999988874 379999876542210 0000 111111 112223322 122 367889
Q ss_pred CEEEEcCC-CCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecC
Q 047227 85 EVVFHMAA-PNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSS 131 (485)
Q Consensus 85 d~Vih~aa-~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS 131 (485)
|+|+-.|+ +.....+.......|..-.+.+.+.+++.+.+-++.+-|
T Consensus 71 diVvitag~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~p~aivivvt 118 (142)
T d1ojua1 71 EIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVT 118 (142)
T ss_dssp SEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECS
T ss_pred cEEEEeccccCCCCCchHHHHHHhhHHHHHHHHHHHhhCCCcEEEEec
Confidence 99999998 444555677888999999999999999988655554443
|
| >d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.32 E-value=0.00046 Score=57.08 Aligned_cols=119 Identities=16% Similarity=0.060 Sum_probs=71.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCc------eEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHH
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMF------SVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQ 79 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~------~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~ 79 (485)
+.|||.|+||+|.+|++++..|...+-. .+.++|...... ..+....-...........+.+- + ...+
T Consensus 2 ~p~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~--~--~~~~ 75 (154)
T d5mdha1 2 EPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMG--VLDGVLMELQDCALPLLKDVIAT--D--KEEI 75 (154)
T ss_dssp CCEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHH--HHHHHHHHHHHTCCTTEEEEEEE--S--CHHH
T ss_pred CceEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccchh--hhhhhhhhhcccccccccccccC--c--cccc
Confidence 4589999999999999999999865321 355554432211 00000000011112233333321 1 1356
Q ss_pred HhcCCCEEEEcCC-CCCCCCchhhhHHHHHHHHHHHHHHHHhc-CCC-EEEEec
Q 047227 80 ALQGAEVVFHMAA-PNSSINNHKLHHSVNVEGTKNVIDACAEL-KVK-RLIYTS 130 (485)
Q Consensus 80 ~~~~~d~Vih~aa-~~~~~~~~~~~~~~nv~~t~~ll~a~~~~-~v~-r~V~~S 130 (485)
.++++|+||-.++ +.....+....+..|..-.+.+.+.+.+. +-. .++.+|
T Consensus 76 ~~~~~dvVVitag~~~~~g~sr~dll~~N~~i~k~~~~~i~k~a~~~~~iivvs 129 (154)
T d5mdha1 76 AFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVG 129 (154)
T ss_dssp HTTTCSEEEECCSCCCCTTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEEECS
T ss_pred ccCCceEEEEecccCCCCCCchhHHHHHhHHHHHHHHHHHHhhCCCceEEEEec
Confidence 7889999999999 44444556677899999999999998775 433 344444
|
| >d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108]
Probab=97.26 E-value=0.0008 Score=54.68 Aligned_cols=114 Identities=11% Similarity=0.153 Sum_probs=68.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhh-hhhhcCCCeEEEEecCCCHHHHHHHhcCCCE
Q 047227 8 RLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGIL-GEALRSGRAHYVSFDLRHKAQVLQALQGAEV 86 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~d~ 86 (485)
+||.|+|+ |.+|+.++..|..++..++.++|......... ...+. .............. .|. +.++++|+
T Consensus 2 ~KI~IIGa-G~VG~~~A~~l~~~~l~dl~l~D~~~~~~~~~--~~Dl~~~~~~~~~~~~i~~~--~d~----~~~~~adv 72 (142)
T d1uxja1 2 KKISIIGA-GFVGSTTAHWLAAKELGDIVLLDIVEGVPQGK--ALDLYEASPIEGFDVRVTGT--NNY----ADTANSDV 72 (142)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSSSSHHHHH--HHHHHTTHHHHTCCCCEEEE--SCG----GGGTTCSE
T ss_pred CeEEEECC-CHHHHHHHHHHHhCCcceEEEEeeccccchhH--HHHhhccccccCCCCEEEec--CcH----HHhcCCCE
Confidence 68999985 99999999999888866888888765421100 00000 00011122223222 122 23577999
Q ss_pred EEEcCCC-CCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEec
Q 047227 87 VFHMAAP-NSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTS 130 (485)
Q Consensus 87 Vih~aa~-~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~S 130 (485)
||-+|+. .....+.......|+.-.+.+++...+.+.+-++.+-
T Consensus 73 vvitag~~~~~~~~r~dl~~~N~~i~~~i~~~i~k~~p~aivivv 117 (142)
T d1uxja1 73 IVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMV 117 (142)
T ss_dssp EEECCSCC---------CHHHHHHHHHHHHHHHGGGCTTCEEEEC
T ss_pred EEEeeeccCCcCcchhHHHhHHHHHHHHHHHHHhccCCCceEEEe
Confidence 9999993 3344455677899999999999999998865555443
|
| >d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Probab=97.17 E-value=0.00068 Score=55.12 Aligned_cols=111 Identities=12% Similarity=0.081 Sum_probs=74.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCc-eEEEeecCCccccCCccchhhhhhhh-cCCCeEEEEecCCCHHHHHHHhcCCC
Q 047227 8 RLCVVTGGRGFAARHLVEMLIRYDMF-SVRIADLSDSIALEPHEEQGILGEAL-RSGRAHYVSFDLRHKAQVLQALQGAE 85 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~~G~~-~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~~~d 85 (485)
.||.|+|+ |.+|++++..|..+|.. ++.++|........ +... +.+.. ..........+ |. +.++++|
T Consensus 2 ~Ki~IIGa-G~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g--~a~D-l~~a~~~~~~~~i~~~~--~~----~~~~daD 71 (143)
T d1llda1 2 TKLAVIGA-GAVGSTLAFAAAQRGIAREIVLEDIAKERVEA--EVLD-MQHGSSFYPTVSIDGSD--DP----EICRDAD 71 (143)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHH--HHHH-HHHTGGGSTTCEEEEES--CG----GGGTTCS
T ss_pred CEEEEECC-CHHHHHHHHHHHhcCCCcEEEEEEeccccchh--HHHH-HHhccccCCCceeecCC--CH----HHhhCCc
Confidence 48999995 99999999999988753 79999876542110 0000 11111 11223333332 22 3467899
Q ss_pred EEEEcCCC-CCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEE
Q 047227 86 VVFHMAAP-NSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIY 128 (485)
Q Consensus 86 ~Vih~aa~-~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~ 128 (485)
+||-.||. .....+.......|+.-.+.+...+.+.+.+-++.
T Consensus 72 vVVitaG~~~~~g~~R~dl~~~N~~i~~~i~~~i~~~~p~ai~i 115 (143)
T d1llda1 72 MVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYM 115 (143)
T ss_dssp EEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEE
T ss_pred EEEEecccccCCCCchhhhhhhhHHHHHHHHHHHHhhCCCeEEE
Confidence 99999994 34445667788999999999999999998654443
|
| >d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=97.13 E-value=0.0025 Score=52.09 Aligned_cols=114 Identities=12% Similarity=0.112 Sum_probs=74.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhh--hhcCCCeEEEEecCCCHHHHHHHhcCC
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGE--ALRSGRAHYVSFDLRHKAQVLQALQGA 84 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 84 (485)
.+||.|+| +|.+|+.++..|..++-.++.++|+........... +.+ .+..........+ + .+.++++
T Consensus 3 ~~KI~IIG-aG~VG~~~a~~l~~~~l~el~L~Di~~~~~~g~a~D---l~~~~~~~~~~~~v~~~~--~----~~~~~~a 72 (150)
T d1t2da1 3 KAKIVLVG-SGMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALD---TSHTNVMAYSNCKVSGSN--T----YDDLAGA 72 (150)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHH---HHTHHHHHTCCCCEEEEC--C----GGGGTTC
T ss_pred CCeEEEEC-CCHHHHHHHHHHHhCCCCeEEEEeccCCcceeeecc---hhhhccccCCCcEEEecc--c----ccccCCC
Confidence 46999999 599999999888888877899999765422110000 111 1112233333322 2 2455789
Q ss_pred CEEEEcCCCCC------CCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEec
Q 047227 85 EVVFHMAAPNS------SINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTS 130 (485)
Q Consensus 85 d~Vih~aa~~~------~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~S 130 (485)
|+|+-+++... ...+.......|+.-.+.+.+.+++.+.+-++.+-
T Consensus 73 dvvvitag~~~~~g~~~~~~~R~~l~~~N~~iv~~i~~~i~~~~p~aivivv 124 (150)
T d1t2da1 73 DVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVV 124 (150)
T ss_dssp SEEEECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEEC
T ss_pred cEEEEecccccCCCCCccccchhHHHHHHHHHHHHHHHHHHhcCCCeEEEEe
Confidence 99999999322 11245677899999999999999999866555443
|
| >d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Salmonella typhimurium [TaxId: 90371]
Probab=97.10 E-value=0.0014 Score=55.51 Aligned_cols=33 Identities=18% Similarity=0.298 Sum_probs=28.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEee
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIAD 39 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~ 39 (485)
|++|.|.|+|||+|..+++.|.++.+.++..+.
T Consensus 1 MikVaIiGATGyvG~eLlrlL~~HP~~ei~~l~ 33 (179)
T d2g17a1 1 MLNTLIVGASGYAGAELVSYVNRHPHMTITALT 33 (179)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHCTTEEEEEEE
T ss_pred CcEEEEECcccHHHHHHHHHHHhCCCCceEeeE
Confidence 579999999999999999999998756665543
|
| >d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Probab=97.08 E-value=0.0014 Score=54.14 Aligned_cols=115 Identities=12% Similarity=0.056 Sum_probs=75.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCc-eEEEeecCCccccCCccchhhhhhh-hcCCCeEEEEecCCCHHHHHHHhcC
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMF-SVRIADLSDSIALEPHEEQGILGEA-LRSGRAHYVSFDLRHKAQVLQALQG 83 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~-~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~l~~~~~~ 83 (485)
+.+||.|+|+ |.+|+.++..|..+|.. ++.++|........ +...+.... +.... ..+.. .|. +.+++
T Consensus 19 ~~~KV~IIGa-G~VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g--~alDl~h~~~~~~~~-~~~~~--~d~----~~~~~ 88 (160)
T d1i0za1 19 PNNKITVVGV-GQVGMACAISILGKSLADELALVDVLEDKLKG--EMMDLQHGSLFLQTP-KIVAD--KDY----SVTAN 88 (160)
T ss_dssp CSSEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHH--HHHHHHHTGGGCCCS-EEEEC--SSG----GGGTT
T ss_pred CCCeEEEECC-CHHHHHHHHHHHhcCCCcEEEEEEeccchhHH--HHHHHhccccccCCC-eEEec--cch----hhccc
Confidence 4579999995 99999999999999863 79999876432210 000111101 11122 22222 222 34678
Q ss_pred CCEEEEcCC-CCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCE-EEEec
Q 047227 84 AEVVFHMAA-PNSSINNHKLHHSVNVEGTKNVIDACAELKVKR-LIYTS 130 (485)
Q Consensus 84 ~d~Vih~aa-~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r-~V~~S 130 (485)
+|+|+..|+ +.....+.....+.|+.-.+.+.....+.+.+- ++.+|
T Consensus 89 adiVVitAg~~~~~g~tR~~l~~~N~~i~~~i~~~i~~~~p~aiiivvt 137 (160)
T d1i0za1 89 SKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVS 137 (160)
T ss_dssp CSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred ccEEEEecCCccccCcchHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeC
Confidence 999999999 434445667788999999999999999988654 44444
|
| >d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Vibrio cholerae [TaxId: 666]
Probab=97.05 E-value=0.0022 Score=52.04 Aligned_cols=94 Identities=17% Similarity=0.118 Sum_probs=53.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcC-Cc--eEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCC
Q 047227 8 RLCVVTGGRGFAARHLVEMLIRYD-MF--SVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGA 84 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~~G-~~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 84 (485)
|||.|.|||||+|+.+++.|+++. |. ++..+..+........ . .+-.....+..|. +.++++
T Consensus 1 mKVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~~~~gk~~~---------~--~~~~~~~~~~~~~----~~~~~~ 65 (147)
T d1mb4a1 1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIGVPAPN---------F--GKDAGMLHDAFDI----ESLKQL 65 (147)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSCCSSBCCC---------S--SSCCCBCEETTCH----HHHTTC
T ss_pred CEEEEECCccHHHHHHHHHHHhcCCCCceEEEEeccccccccccc---------c--CCcceeeecccch----hhhccc
Confidence 689999999999999999988753 22 4544443322111100 0 0111111123343 335789
Q ss_pred CEEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCC-EEEEecC
Q 047227 85 EVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVK-RLIYTSS 131 (485)
Q Consensus 85 d~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~-r~V~~SS 131 (485)
|+||-+.+. .-+..+...+.+.|.+ .+|=.||
T Consensus 66 DvvF~alp~---------------~~s~~~~~~l~~~g~~~~VIDlSs 98 (147)
T d1mb4a1 66 DAVITCQGG---------------SYTEKVYPALRQAGWKGYWIDAAS 98 (147)
T ss_dssp SEEEECSCH---------------HHHHHHHHHHHHTTCCSEEEESSS
T ss_pred cEEEEecCc---------------hHHHHHhHHHHHcCCceEEEeCCc
Confidence 999987751 1134566777777864 3554554
|
| >d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Usg-1 protein homolog PA3116 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.90 E-value=0.00058 Score=55.72 Aligned_cols=35 Identities=20% Similarity=0.246 Sum_probs=27.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCC--ceEEEeecC
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDM--FSVRIADLS 41 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~--~~V~~~~r~ 41 (485)
.|+|.|.|||||+|..+++.|.+++| .++..+...
T Consensus 2 ~mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~ 38 (144)
T d2hjsa1 2 PLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASA 38 (144)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECT
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeec
Confidence 48999999999999999999976654 356655443
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=96.79 E-value=0.00043 Score=59.24 Aligned_cols=35 Identities=14% Similarity=0.214 Sum_probs=32.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCc
Q 047227 8 RLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDS 43 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~ 43 (485)
|||.|+||+|.+|+.+++.|.+.| ++|.+.+|.+.
T Consensus 1 Mki~vigGaG~iG~alA~~la~~G-~~V~l~~R~~e 35 (212)
T d1jaya_ 1 MRVALLGGTGNLGKGLALRLATLG-HEIVVGSRREE 35 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTT-CEEEEEESSHH
T ss_pred CEEEEEeCCcHHHHHHHHHHHHCC-CEEEEEECCHH
Confidence 689999999999999999999999 59999998754
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=96.74 E-value=0.0013 Score=55.34 Aligned_cols=75 Identities=12% Similarity=0.042 Sum_probs=50.2
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCC
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGA 84 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 84 (485)
.++.+|||+||+|-+|...++.+...| .+|+++++++.+. +....-+++.+ .|..+...-...-+++
T Consensus 26 ~~g~~VlI~ga~G~vG~~aiqlak~~G-~~vi~~~~~~~~~-----------~~~~~lGa~~~-i~~~~~~~~~~~~~g~ 92 (171)
T d1iz0a2 26 RPGEKVLVQAAAGALGTAAVQVARAMG-LRVLAAASRPEKL-----------ALPLALGAEEA-ATYAEVPERAKAWGGL 92 (171)
T ss_dssp CTTCEEEESSTTBHHHHHHHHHHHHTT-CEEEEEESSGGGS-----------HHHHHTTCSEE-EEGGGHHHHHHHTTSE
T ss_pred CCCCEEEEEeccccchhhhhhhhcccc-ccccccccccccc-----------cccccccccee-eehhhhhhhhhccccc
Confidence 456899999999999999999999999 5888887654311 11111233332 2444443333344679
Q ss_pred CEEEEcCC
Q 047227 85 EVVFHMAA 92 (485)
Q Consensus 85 d~Vih~aa 92 (485)
|+||++.|
T Consensus 93 D~v~d~~G 100 (171)
T d1iz0a2 93 DLVLEVRG 100 (171)
T ss_dssp EEEEECSC
T ss_pred cccccccc
Confidence 99999876
|
| >d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Probab=96.74 E-value=0.0033 Score=51.12 Aligned_cols=112 Identities=14% Similarity=0.098 Sum_probs=71.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCC-ceEEEeecCCccccCCccchhhhhhhhc--CCCeEEEEecCCCHHHHHHHhcCC
Q 047227 8 RLCVVTGGRGFAARHLVEMLIRYDM-FSVRIADLSDSIALEPHEEQGILGEALR--SGRAHYVSFDLRHKAQVLQALQGA 84 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~~G~-~~V~~~~r~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~Dl~d~~~l~~~~~~~ 84 (485)
|||.|+| +|.+|+.++..|+.+|. .++.++|........ +... +.+... .........| . +.++++
T Consensus 2 kKI~IIG-aG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g--~~~D-l~~a~~~~~~~~~~~~~d---~----~~l~~a 70 (146)
T d1hyha1 2 RKIGIIG-LGNVGAAVAHGLIAQGVADDYVFIDANEAKVKA--DQID-FQDAMANLEAHGNIVIND---W----AALADA 70 (146)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHH--HHHH-HHHHGGGSSSCCEEEESC---G----GGGTTC
T ss_pred CeEEEEC-cCHHHHHHHHHHHhcCCCceEEEEecccchhhh--HHHh-hhccccccCCccceeccC---H----HHhccc
Confidence 7899999 59999999999998874 378888876542110 0011 112111 1233343333 2 346889
Q ss_pred CEEEEcCCCCC-----CCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEec
Q 047227 85 EVVFHMAAPNS-----SINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTS 130 (485)
Q Consensus 85 d~Vih~aa~~~-----~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~S 130 (485)
|+||-+||... ...+.......|+.-.+.+.+..++.+.+-++.+-
T Consensus 71 diVVitaG~~~~~~~~~g~~R~~l~~~N~~i~~~i~~~i~~~~p~aivivv 121 (146)
T d1hyha1 71 DVVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVVI 121 (146)
T ss_dssp SEEEECCSCGGGTC-------CTTHHHHHHHHHHHHHHHHHTTCCSEEEEC
T ss_pred cEEEEeccccccccccCCccHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEe
Confidence 99999999322 11233456788999999999999998865555433
|
| >d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.70 E-value=0.0019 Score=53.29 Aligned_cols=112 Identities=13% Similarity=-0.006 Sum_probs=71.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCc-eEEEeecCCccccCCccchhhhhhhh-cCCCeEEEEecCCCHHHHHHHhcC
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMF-SVRIADLSDSIALEPHEEQGILGEAL-RSGRAHYVSFDLRHKAQVLQALQG 83 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~-~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~~ 83 (485)
+..||.|+| +|.+|+.++..|..+|.. ++.++|+....... +... +.+.. ....-..+.. .|. +.+++
T Consensus 18 ~~~KI~IIG-aG~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g--~alD-l~~~~~~~~~~~~~~~--~d~----~~~~~ 87 (159)
T d2ldxa1 18 SRCKITVVG-VGDVGMACAISILLKGLADELALVDADTDKLRG--EALD-LQHGSLFLSTPKIVFG--KDY----NVSAN 87 (159)
T ss_dssp CCCEEEEEC-CSHHHHHHHHHHHTTTSCSEEEEECSCHHHHHH--HHHH-HHHTTTTCSCCEEEEE--SSG----GGGTT
T ss_pred CCCeEEEEC-CCHHHHHHHHHHHhcCCCCEEEEEeCCchhhhc--cHHH-HhCcchhcCCCeEEec--cch----hhhcc
Confidence 446899998 599999999999998753 79999876432110 0000 11111 1111222222 122 34578
Q ss_pred CCEEEEcCC-CCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEE
Q 047227 84 AEVVFHMAA-PNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLI 127 (485)
Q Consensus 84 ~d~Vih~aa-~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V 127 (485)
+|+||-.|+ +.....+....++.|+.-.+.+.....+.+.+-++
T Consensus 88 adivvitag~~~~~~~~R~dll~~N~~i~~~i~~~i~~~~p~~iv 132 (159)
T d2ldxa1 88 SKLVIITAGARMVSGQTRLDLLQRNVAIMKAIVPGVIQNSPDCKI 132 (159)
T ss_dssp EEEEEECCSCCCCTTTCSSCTTHHHHHHHHHHTTTHHHHSTTCEE
T ss_pred ccEEEEecccccCCCCCHHHHHHHHHHHHHHHHHHHhccCCCeEE
Confidence 999999998 44444555667899999999999999888754443
|
| >d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide transformylase PurT, N-domain species: Escherichia coli [TaxId: 562]
Probab=96.62 E-value=0.0049 Score=47.40 Aligned_cols=68 Identities=7% Similarity=0.033 Sum_probs=53.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc--CC
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ--GA 84 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--~~ 84 (485)
..||.|.| .|.+|+-++....+.| ++|+++|..+..... .---+++.+|..|.+++.+..+ ++
T Consensus 11 ~~kigIlG-gGQL~rMla~aA~~lG-~~v~v~d~~~~~PA~-------------~va~~~i~~~~~d~~~l~~~~~~~~~ 75 (111)
T d1kjqa2 11 ATRVMLLG-SGELGKEVAIECQRLG-VEVIAVDRYADAPAM-------------HVAHRSHVINMLDGDALRRVVELEKP 75 (111)
T ss_dssp CCEEEEES-CSHHHHHHHHHHHTTT-CEEEEEESSTTCGGG-------------GGSSEEEECCTTCHHHHHHHHHHHCC
T ss_pred CCEEEEEe-CCHHHHHHHHHHHHCC-CEEEEEcCCCCCchh-------------hcCCeEEECCCCCHHHHHHHHHhhCC
Confidence 46899998 8999999999999999 699999876542110 0123678899999999988874 68
Q ss_pred CEEEE
Q 047227 85 EVVFH 89 (485)
Q Consensus 85 d~Vih 89 (485)
|+|-.
T Consensus 76 DviT~ 80 (111)
T d1kjqa2 76 HYIVP 80 (111)
T ss_dssp SEEEE
T ss_pred ceEEE
Confidence 99873
|
| >d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Putative shikimate dehydrogenase YdiB species: Escherichia coli [TaxId: 562]
Probab=96.57 E-value=0.0025 Score=53.95 Aligned_cols=84 Identities=12% Similarity=0.076 Sum_probs=60.2
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCC
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGA 84 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 84 (485)
..+++|+|.| +|-.|+.++..|.+.|...+++++|.+...... ..+.......-.......|+.+.+.+.+.+..+
T Consensus 16 l~~k~vlIlG-aGGaarai~~al~~~g~~~i~i~nR~~~~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (182)
T d1vi2a1 16 IKGKTMVLLG-AGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKA---LAFAQRVNENTDCVVTVTDLADQQAFAEALASA 91 (182)
T ss_dssp CTTCEEEEEC-CSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHH---HHHHHHHHHHSSCEEEEEETTCHHHHHHHHHTC
T ss_pred cCCCEEEEEC-CcHHHHHHHHHHhhcCCceEeeeccchHHHHHH---HHHHHHHHhhcCcceEeeecccccchhhhhccc
Confidence 3568999999 588899999999999866899999875422110 011111112233445678899998898889999
Q ss_pred CEEEEcCC
Q 047227 85 EVVFHMAA 92 (485)
Q Consensus 85 d~Vih~aa 92 (485)
|.||++..
T Consensus 92 diiIN~Tp 99 (182)
T d1vi2a1 92 DILTNGTK 99 (182)
T ss_dssp SEEEECSS
T ss_pred ceeccccC
Confidence 99999976
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=96.54 E-value=0.0023 Score=52.45 Aligned_cols=76 Identities=12% Similarity=0.072 Sum_probs=56.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHH-hcCCCE
Q 047227 8 RLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQA-LQGAEV 86 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~-~~~~d~ 86 (485)
.+|+|.|. |-+|..+++.|.++| ..|++++..+.... .........++.++.||.+|++.+.++ ++.+|+
T Consensus 4 nHiII~G~-g~~g~~l~~~L~~~~-~~v~vId~d~~~~~-------~~~~~~~~~~~~vi~Gd~~d~~~L~~a~i~~a~~ 74 (153)
T d1id1a_ 4 DHFIVCGH-SILAINTILQLNQRG-QNVTVISNLPEDDI-------KQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRA 74 (153)
T ss_dssp SCEEEECC-SHHHHHHHHHHHHTT-CCEEEEECCCHHHH-------HHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSE
T ss_pred CEEEEECC-CHHHHHHHHHHHHcC-CCEEEEeccchhHH-------HHHHHhhcCCcEEEEccCcchHHHHHhccccCCE
Confidence 47889885 899999999999999 58888876542110 012223356899999999999988877 467999
Q ss_pred EEEcCC
Q 047227 87 VFHMAA 92 (485)
Q Consensus 87 Vih~aa 92 (485)
||-+..
T Consensus 75 vi~~~~ 80 (153)
T d1id1a_ 75 ILALSD 80 (153)
T ss_dssp EEECSS
T ss_pred EEEccc
Confidence 996653
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=96.53 E-value=0.0049 Score=50.30 Aligned_cols=38 Identities=21% Similarity=0.278 Sum_probs=33.5
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCc
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDS 43 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~ 43 (485)
..+++|.|.||.|.+|+.+++.|.++| ++|++.|+...
T Consensus 7 ~~~~kI~iIGg~G~mG~~la~~L~~~G-~~V~~~d~~~~ 44 (152)
T d2pv7a2 7 SDIHKIVIVGGYGKLGGLFARYLRASG-YPISILDREDW 44 (152)
T ss_dssp TTCCCEEEETTTSHHHHHHHHHHHTTT-CCEEEECTTCG
T ss_pred CCCCeEEEEcCCCHHHHHHHHHHHHcC-CCcEecccccc
Confidence 346799999999999999999999999 59999988653
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=96.52 E-value=0.0029 Score=52.57 Aligned_cols=34 Identities=21% Similarity=0.067 Sum_probs=30.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCc
Q 047227 8 RLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDS 43 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~ 43 (485)
|||.|.| .|.+|+.+++.|.++| ++|.++||.+.
T Consensus 1 MkI~iIG-~G~mG~~lA~~l~~~g-~~V~~~d~~~~ 34 (165)
T d2f1ka2 1 MKIGVVG-LGLIGASLAGDLRRRG-HYLIGVSRQQS 34 (165)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHTT-CEEEEECSCHH
T ss_pred CEEEEEe-ecHHHHHHHHHHHHCC-CEEEEEECCch
Confidence 6899997 7999999999999999 59999998754
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.42 E-value=0.002 Score=54.09 Aligned_cols=75 Identities=16% Similarity=0.221 Sum_probs=49.4
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHH---HHHHh
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQ---VLQAL 81 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~---l~~~~ 81 (485)
.++.+|||+||+|-+|...++.+...| .+|+++++++.+ .+....-++..+ .|.++.+. +.+..
T Consensus 27 ~~g~~VlV~Ga~G~vG~~aiq~a~~~G-~~vi~~~~~~~~-----------~~~~~~~Ga~~v-i~~~~~~~~~~i~~~t 93 (174)
T d1yb5a2 27 KAGESVLVHGASGGVGLAACQIARAYG-LKILGTAGTEEG-----------QKIVLQNGAHEV-FNHREVNYIDKIKKYV 93 (174)
T ss_dssp CTTCEEEEETCSSHHHHHHHHHHHHTT-CEEEEEESSHHH-----------HHHHHHTTCSEE-EETTSTTHHHHHHHHH
T ss_pred CCCCEEEEEeccccccccccccccccC-cccccccccccc-----------cccccccCcccc-cccccccHHHHhhhhh
Confidence 356799999999999999999999999 688888765431 111111233322 35555433 33333
Q ss_pred c--CCCEEEEcCC
Q 047227 82 Q--GAEVVFHMAA 92 (485)
Q Consensus 82 ~--~~d~Vih~aa 92 (485)
. ++|+|+++.+
T Consensus 94 ~~~g~d~v~d~~g 106 (174)
T d1yb5a2 94 GEKGIDIIIEMLA 106 (174)
T ss_dssp CTTCEEEEEESCH
T ss_pred ccCCceEEeeccc
Confidence 3 4899998875
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.41 E-value=0.0033 Score=54.22 Aligned_cols=34 Identities=18% Similarity=0.131 Sum_probs=30.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCc
Q 047227 8 RLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDS 43 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~ 43 (485)
|||.|.| .||+|..++..|.++| ++|.++|....
T Consensus 1 MkI~ViG-lG~vGl~~a~~la~~g-~~V~g~D~n~~ 34 (202)
T d1mv8a2 1 MRISIFG-LGYVGAVCAGCLSARG-HEVIGVDVSST 34 (202)
T ss_dssp CEEEEEC-CSTTHHHHHHHHHHTT-CEEEEECSCHH
T ss_pred CEEEEEC-CCHhHHHHHHHHHhCC-CcEEEEeCCHH
Confidence 6899996 9999999999999999 59999997653
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=96.40 E-value=0.0012 Score=55.93 Aligned_cols=102 Identities=13% Similarity=0.073 Sum_probs=63.3
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEE-E-ecCCCHHHHHHHh-
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYV-S-FDLRHKAQVLQAL- 81 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~-~-~Dl~d~~~l~~~~- 81 (485)
.++.+|||+||+|-+|...++.....| .+|+++++++.+ .+.....+...+ . -|-...+.+.+..
T Consensus 28 ~~G~~VlV~ga~ggvG~~aiqlak~~G-a~vi~~~~~~~~-----------~~~~~~~Ga~~vi~~~~~~~~~~~~~~~~ 95 (182)
T d1v3va2 28 KGGETVLVSAAAGAVGSVVGQIAKLKG-CKVVGAAGSDEK-----------IAYLKQIGFDAAFNYKTVNSLEEALKKAS 95 (182)
T ss_dssp CSSCEEEESSTTSHHHHHHHHHHHHTT-CEEEEEESSHHH-----------HHHHHHTTCSEEEETTSCSCHHHHHHHHC
T ss_pred CCCCEEEEEeCCCchhHHHHHHHHccC-CEEEEeCCCHHH-----------HHHHHhhhhhhhcccccccHHHHHHHHhh
Confidence 457899999999999999999999999 699988876431 111222233332 2 2333344444444
Q ss_pred -cCCCEEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCcccc
Q 047227 82 -QGAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVV 135 (485)
Q Consensus 82 -~~~d~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy 135 (485)
+++|+||++.+. .+ ....+++++..| +++.+...+.|
T Consensus 96 ~~Gvd~v~D~vG~--------~~-------~~~~~~~l~~~G--~~v~~G~~~~~ 133 (182)
T d1v3va2 96 PDGYDCYFDNVGG--------EF-------LNTVLSQMKDFG--KIAICGAISVY 133 (182)
T ss_dssp TTCEEEEEESSCH--------HH-------HHHHGGGEEEEE--EEEECCCGGGT
T ss_pred cCCCceeEEecCc--------hh-------hhhhhhhccCCC--eEEeecceeec
Confidence 359999998861 01 123444444444 67776665554
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=96.39 E-value=0.02 Score=43.87 Aligned_cols=94 Identities=15% Similarity=0.196 Sum_probs=64.7
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCC
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGA 84 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 84 (485)
.++++|||+| .|-+|..-++.|++.| ..|++++..... + ........+++++..+..+. .++++
T Consensus 10 l~~k~vlVvG-~G~va~~ka~~ll~~g-a~v~v~~~~~~~------~---~~~~~~~~~i~~~~~~~~~~-----dl~~~ 73 (113)
T d1pjqa1 10 LRDRDCLIVG-GGDVAERKARLLLEAG-ARLTVNALTFIP------Q---FTVWANEGMLTLVEGPFDET-----LLDSC 73 (113)
T ss_dssp CBTCEEEEEC-CSHHHHHHHHHHHHTT-BEEEEEESSCCH------H---HHHHHTTTSCEEEESSCCGG-----GGTTC
T ss_pred eCCCEEEEEC-CCHHHHHHHHHHHHCC-CeEEEEeccCCh------H---HHHHHhcCCceeeccCCCHH-----HhCCC
Confidence 4578999998 7899999999999999 689888654331 1 33334456788888766542 35678
Q ss_pred CEEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEec
Q 047227 85 EVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTS 130 (485)
Q Consensus 85 d~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~S 130 (485)
+.|+-..+ +.+ . ...+.+.|++.|+ +|.+.
T Consensus 74 ~lv~~at~------d~~----~----n~~i~~~a~~~~i--lVNv~ 103 (113)
T d1pjqa1 74 WLAIAATD------DDT----V----NQRVSDAAESRRI--FCNVV 103 (113)
T ss_dssp SEEEECCS------CHH----H----HHHHHHHHHHTTC--EEEET
T ss_pred cEEeecCC------CHH----H----HHHHHHHHHHcCC--EEEeC
Confidence 88885432 211 1 2367888998874 66654
|
| >d1u7za_ c.72.3.1 (A:) Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribokinase-like superfamily: CoaB-like family: CoaB-like domain: Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB) species: Escherichia coli [TaxId: 562]
Probab=96.39 E-value=0.0069 Score=52.89 Aligned_cols=73 Identities=14% Similarity=0.093 Sum_probs=51.4
Q ss_pred CCCCCEEEEEcC----------------CCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEE
Q 047227 4 EENERLCVVTGG----------------RGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYV 67 (485)
Q Consensus 4 ~~~~~~iLVtGg----------------tG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~ 67 (485)
...+|+||||+| ||..|.++++.+..+| ++|+++.-..+.. ....+..+
T Consensus 3 dl~g~~vlITaG~T~E~ID~VR~ItN~SSGk~G~aiA~~~~~~G-a~V~li~g~~~~~--------------~p~~~~~~ 67 (223)
T d1u7za_ 3 DLKHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRG-ANVTLVSGPVSLP--------------TPPFVKRV 67 (223)
T ss_dssp TTTTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTT-CEEEEEECSCCCC--------------CCTTEEEE
T ss_pred ccCCCEEEEECCCCcccCCCcceeccCCcHHHHHHHHHHHHHcC-CchhhhhcccccC--------------cccccccc
Confidence 356789999976 7999999999999999 5888886543311 12345555
Q ss_pred EecCCCHHHH----HHHhcCCCEEEEcCCC
Q 047227 68 SFDLRHKAQV----LQALQGAEVVFHMAAP 93 (485)
Q Consensus 68 ~~Dl~d~~~l----~~~~~~~d~Vih~aa~ 93 (485)
.. ...+++ .+.++++|++|+.||+
T Consensus 68 ~~--~t~~~m~~~~~~~~~~~D~~i~aAAv 95 (223)
T d1u7za_ 68 DV--MTALEMEAAVNASVQQQNIFIGCAAV 95 (223)
T ss_dssp EC--CSHHHHHHHHHHHGGGCSEEEECCBC
T ss_pred ee--hhhHHHHHHHHhhhccceeEeeeech
Confidence 43 344333 3445679999999994
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.34 E-value=0.0025 Score=53.84 Aligned_cols=100 Identities=19% Similarity=0.133 Sum_probs=62.6
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCH---HHHHHHh
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHK---AQVLQAL 81 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~---~~l~~~~ 81 (485)
.++.+|||+||+|-+|...++.+...| .+|.++++.+++ .+.+..-++..+ .|..++ +++.+..
T Consensus 24 ~~g~~VlI~ga~g~vG~~~iqla~~~g-~~vi~~~~~~~~-----------~~~l~~~Ga~~v-i~~~~~~~~~~v~~~t 90 (183)
T d1pqwa_ 24 SPGERVLIHSATGGVGMAAVSIAKMIG-ARIYTTAGSDAK-----------REMLSRLGVEYV-GDSRSVDFADEILELT 90 (183)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHHT-CEEEEEESSHHH-----------HHHHHTTCCSEE-EETTCSTHHHHHHHHT
T ss_pred CCCCEEEEECCCCCcccccchhhcccc-ccceeeeccccc-----------cccccccccccc-ccCCccCHHHHHHHHh
Confidence 456899999999999999999999999 688887765431 122223344433 344443 3444444
Q ss_pred --cCCCEEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCccc
Q 047227 82 --QGAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSV 134 (485)
Q Consensus 82 --~~~d~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~v 134 (485)
+++|+||++.+. .. ....+++++..| |+|.++..+.
T Consensus 91 ~~~g~d~v~d~~g~--------~~-------~~~~~~~l~~~G--~~v~~G~~~~ 128 (183)
T d1pqwa_ 91 DGYGVDVVLNSLAG--------EA-------IQRGVQILAPGG--RFIELGKKDV 128 (183)
T ss_dssp TTCCEEEEEECCCT--------HH-------HHHHHHTEEEEE--EEEECSCGGG
T ss_pred CCCCEEEEEecccc--------hH-------HHHHHHHhcCCC--EEEEEccCCC
Confidence 359999998861 01 123445555444 7887765443
|
| >d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Thermotoga maritima [TaxId: 2336]
Probab=96.23 E-value=0.009 Score=47.17 Aligned_cols=73 Identities=14% Similarity=0.254 Sum_probs=50.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCCCEE
Q 047227 8 RLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGAEVV 87 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~d~V 87 (485)
|||.|.|++|-.|+.+.+.+.++|+..+..+++... +.+.++|+|
T Consensus 1 mki~i~G~~GrMG~~i~~~~~~~~~~l~~~id~~~~-----------------------------------~~~~~~DVv 45 (128)
T d1vm6a3 1 MKYGIVGYSGRMGQEIQKVFSEKGHELVLKVDVNGV-----------------------------------EELDSPDVV 45 (128)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEETTEE-----------------------------------EECSCCSEE
T ss_pred CEEEEECCCCHHHHHHHHHHhcCCCeEEEEECCCcH-----------------------------------HHhccCCEE
Confidence 689999999999999999999899643433332210 113568999
Q ss_pred EEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecC
Q 047227 88 FHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSS 131 (485)
Q Consensus 88 ih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS 131 (485)
|++.. |+ ++...++.|.+.++ .+|.-+|
T Consensus 46 IDFS~-------p~--------~~~~~l~~~~~~~~-p~ViGTT 73 (128)
T d1vm6a3 46 IDFSS-------PE--------ALPKTVDLCKKYRA-GLVLGTT 73 (128)
T ss_dssp EECSC-------GG--------GHHHHHHHHHHHTC-EEEECCC
T ss_pred EEecC-------HH--------HHHHHHHHHHhcCC-CEEEEcC
Confidence 98874 22 33468889999886 5554333
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=96.20 E-value=0.02 Score=42.26 Aligned_cols=87 Identities=14% Similarity=0.173 Sum_probs=57.0
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCC
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGA 84 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 84 (485)
.++++|+|.| -|-.|..++++|.++| .+|++.|........ ..+ .....++.+.. +. ..+.++
T Consensus 3 ~~~K~v~ViG-lG~sG~s~a~~L~~~g-~~v~~~D~~~~~~~~---------~~~-~~~~~~~~~~~-~~----~~~~~~ 65 (93)
T d2jfga1 3 YQGKNVVIIG-LGLTGLSCVDFFLARG-VTPRVMDTRMTPPGL---------DKL-PEAVERHTGSL-ND----EWLMAA 65 (93)
T ss_dssp CTTCCEEEEC-CSHHHHHHHHHHHHTT-CCCEEEESSSSCTTG---------GGS-CTTSCEEESBC-CH----HHHHHC
T ss_pred cCCCEEEEEe-ECHHHHHHHHHHHHCC-CEEEEeeCCcCchhH---------HHH-hhccceeeccc-ch----hhhccC
Confidence 4678999998 5889999999999999 699999876442111 111 23445555553 22 234568
Q ss_pred CEEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCC
Q 047227 85 EVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKV 123 (485)
Q Consensus 85 d~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v 123 (485)
|.||---|.... + .+++.|++.|+
T Consensus 66 d~vi~SPGi~~~--~-------------~~~~~a~~~gi 89 (93)
T d2jfga1 66 DLIVASPGIALA--H-------------PSLSAAADAGI 89 (93)
T ss_dssp SEEEECTTSCTT--S-------------HHHHHHHHTTC
T ss_pred CEEEECCCCCCC--C-------------HHHHHHHHcCC
Confidence 999976653221 1 47777888776
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=96.20 E-value=0.0016 Score=53.94 Aligned_cols=75 Identities=20% Similarity=0.286 Sum_probs=52.5
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCC
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGA 84 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 84 (485)
.++++|||+|+ |-+|..+++.|..+|..++++.+|...+... +...+ +.+.+ +.+++.+.+..+
T Consensus 22 l~~~~ilviGa-G~~g~~v~~~L~~~g~~~i~v~nRt~~ka~~-------l~~~~---~~~~~-----~~~~~~~~l~~~ 85 (159)
T d1gpja2 22 LHDKTVLVVGA-GEMGKTVAKSLVDRGVRAVLVANRTYERAVE-------LARDL---GGEAV-----RFDELVDHLARS 85 (159)
T ss_dssp CTTCEEEEESC-CHHHHHHHHHHHHHCCSEEEEECSSHHHHHH-------HHHHH---TCEEC-----CGGGHHHHHHTC
T ss_pred cccCeEEEECC-CHHHHHHHHHHHhcCCcEEEEEcCcHHHHHH-------HHHhh---hcccc-----cchhHHHHhccC
Confidence 45789999995 9999999999999995579999887542211 11111 22222 234577788899
Q ss_pred CEEEEcCCCCC
Q 047227 85 EVVFHMAAPNS 95 (485)
Q Consensus 85 d~Vih~aa~~~ 95 (485)
|+||.+.+...
T Consensus 86 Divi~atss~~ 96 (159)
T d1gpja2 86 DVVVSATAAPH 96 (159)
T ss_dssp SEEEECCSSSS
T ss_pred CEEEEecCCCC
Confidence 99999987433
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=96.17 E-value=0.0068 Score=49.98 Aligned_cols=34 Identities=15% Similarity=-0.012 Sum_probs=31.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCc
Q 047227 8 RLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDS 43 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~ 43 (485)
|||+|.|+ |.+|+.++..|.+.| ++|++++|.+.
T Consensus 1 MkI~IiGa-G~iG~~~a~~L~~~G-~~V~~~~r~~~ 34 (167)
T d1ks9a2 1 MKITVLGC-GALGQLWLTALCKQG-HEVQGWLRVPQ 34 (167)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTT-CEEEEECSSCC
T ss_pred CEEEEECc-CHHHHHHHHHHHHCC-CceEEEEcCHH
Confidence 79999986 999999999999999 49999998765
|
| >d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=96.07 E-value=0.0063 Score=48.20 Aligned_cols=92 Identities=12% Similarity=0.083 Sum_probs=61.1
Q ss_pred CCCCCCCEEEEEcCC---CchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHH
Q 047227 2 SGEENERLCVVTGGR---GFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVL 78 (485)
Q Consensus 2 ~~~~~~~~iLVtGgt---G~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~ 78 (485)
+.-...++|.|.|++ |..|..+.+.|.+.|..+|+.++...... .+... .-++.|
T Consensus 3 ~~lf~PksIAVVGaS~~~~~~g~~v~~~L~~~~~g~v~pVnP~~~~i----------------~G~~~-y~sl~d----- 60 (129)
T d2csua1 3 DYFFNPKGIAVIGASNDPKKLGYEVFKNLKEYKKGKVYPVNIKEEEV----------------QGVKA-YKSVKD----- 60 (129)
T ss_dssp CTTTSCSEEEEETCCSCTTSHHHHHHHHHTTCCSSEEEEECSSCSEE----------------TTEEC-BSSTTS-----
T ss_pred hHhCCCCeEEEEccCCCCCCcHHHHHHHHHHcCCCcEEEeccCcccc----------------CCeEe-ecchhh-----
Confidence 334567899999998 99999999999876645888886543210 11111 123333
Q ss_pred HHhcCCCEEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecC
Q 047227 79 QALQGAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSS 131 (485)
Q Consensus 79 ~~~~~~d~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS 131 (485)
+=+.+|.++-+.. ...+..+++.|.+.|++.++.+|+
T Consensus 61 -lp~~vDlvvi~vp---------------~~~~~~~~~~~~~~g~~~~vi~s~ 97 (129)
T d2csua1 61 -IPDEIDLAIIVVP---------------KRFVKDTLIQCGEKGVKGVVIITA 97 (129)
T ss_dssp -CSSCCSEEEECSC---------------HHHHHHHHHHHHHHTCCEEEECCC
T ss_pred -cCCCCceEEEecC---------------hHHhHHHHHHHHHcCCCEEEEecc
Confidence 2245888885543 233456889999999998888876
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=96.01 E-value=0.0025 Score=53.71 Aligned_cols=75 Identities=9% Similarity=-0.005 Sum_probs=50.7
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHH---HHHHHh
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKA---QVLQAL 81 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~---~l~~~~ 81 (485)
.++.+|||+||+|-+|..+++.+...| .+|+++++++.+. .+.. .-+++.+ .|.++++ ++.++-
T Consensus 27 ~~g~~Vlv~ga~g~vG~~~iqlak~~G-a~Vi~~~~s~~k~-------~~~~----~lGa~~v-i~~~~~d~~~~v~~~t 93 (179)
T d1qora2 27 KPDEQFLFHAAAGGVGLIACQWAKALG-AKLIGTVGTAQKA-------QSAL----KAGAWQV-INYREEDLVERLKEIT 93 (179)
T ss_dssp CTTCEEEESSTTBHHHHHHHHHHHHHT-CEEEEEESSHHHH-------HHHH----HHTCSEE-EETTTSCHHHHHHHHT
T ss_pred CCCCEEEEEccccccchHHHHHHHHhC-CeEeecccchHHH-------HHHH----hcCCeEE-EECCCCCHHHHHHHHh
Confidence 356799999999999999999999999 6899988875421 1111 1233332 3555533 344443
Q ss_pred c--CCCEEEEcCC
Q 047227 82 Q--GAEVVFHMAA 92 (485)
Q Consensus 82 ~--~~d~Vih~aa 92 (485)
. ++|+|+++.+
T Consensus 94 ~g~g~d~v~d~~g 106 (179)
T d1qora2 94 GGKKVRVVYDSVG 106 (179)
T ss_dssp TTCCEEEEEECSC
T ss_pred CCCCeEEEEeCcc
Confidence 3 4899999886
|
| >d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=95.98 E-value=0.0082 Score=49.57 Aligned_cols=103 Identities=14% Similarity=0.125 Sum_probs=62.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccc----hhhhhhhhcCCCeEEEEecCCCHHHHHHHhc
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEE----QGILGEALRSGRAHYVSFDLRHKAQVLQALQ 82 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~----~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~ 82 (485)
|++|.+.| .|.+|+.+++.|+++| ++|.+.||.+......... .....+.. .....+..-+.+.++.++++.
T Consensus 1 M~kIg~IG-lG~MG~~iA~~L~~~g-~~v~~~d~~~~~~~~~~~~~~~~~~~~~e~~--~~~diii~~v~~~~~~~~v~~ 76 (162)
T d3cuma2 1 MKQIAFIG-LGHMGAPMATNLLKAG-YLLNVFDLVQSAVDGLVAAGASAARSARDAV--QGADVVISMLPASQHVEGLYL 76 (162)
T ss_dssp CCEEEEEC-CSTTHHHHHHHHHHTT-CEEEEECSSHHHHHHHHHTTCEECSSHHHHH--TSCSEEEECCSCHHHHHHHHH
T ss_pred CCEEEEEE-EHHHHHHHHHHHHHCC-CeEEEEECchhhhhhhhhhhccccchhhhhc--cccCeeeecccchhhHHHHHh
Confidence 46899997 9999999999999999 6999999875532111000 00011112 233455555566666665543
Q ss_pred C----------CCEEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEE
Q 047227 83 G----------AEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLI 127 (485)
Q Consensus 83 ~----------~d~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V 127 (485)
. =+.|+++.. -.| ..+..+.+.+++.|+ +|+
T Consensus 77 ~~~~~~~~l~~g~iiid~st-----~~p--------~~~~~~~~~~~~~gi-~~~ 117 (162)
T d3cuma2 77 DDDGLLAHIAPGTLVLECST-----IAP--------TSARKIHAAARERGL-AML 117 (162)
T ss_dssp STTCHHHHSCTTCEEEECSC-----CCH--------HHHHHHHHHHHHTTC-EEE
T ss_pred ccccccccCCCCCEEEECCC-----CCH--------HHHHHHHHHHHHCCC-cEE
Confidence 2 256776654 122 334567777888776 555
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.91 E-value=0.04 Score=45.50 Aligned_cols=76 Identities=14% Similarity=0.118 Sum_probs=50.5
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCe-EEEEecCCCHHHHHHHh--
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRA-HYVSFDLRHKAQVLQAL-- 81 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~Dl~d~~~l~~~~-- 81 (485)
.++.+|+|.|+ |-+|...+..+...|..+|.++++.+.+ +.. .+.-++ ..+..+-.+..+..+.+
T Consensus 25 ~~gd~VlI~G~-G~iG~~~~~~a~~~G~~~Vi~~d~~~~r----------l~~-a~~~Ga~~~~~~~~~~~~~~~~~~~~ 92 (171)
T d1pl8a2 25 TLGHKVLVCGA-GPIGMVTLLVAKAMGAAQVVVTDLSATR----------LSK-AKEIGADLVLQISKESPQEIARKVEG 92 (171)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESCHHH----------HHH-HHHTTCSEEEECSSCCHHHHHHHHHH
T ss_pred CCCCEEEEECC-CccHHHHHHHHHHcCCceEEeccCCHHH----------HHH-HHHhCCcccccccccccccccccccc
Confidence 34678999985 9999999999999995479988876541 111 111233 33344445555555544
Q ss_pred ---cCCCEEEEcCC
Q 047227 82 ---QGAEVVFHMAA 92 (485)
Q Consensus 82 ---~~~d~Vih~aa 92 (485)
.++|+||.+.+
T Consensus 93 ~~g~g~Dvvid~~G 106 (171)
T d1pl8a2 93 QLGCKPEVTIECTG 106 (171)
T ss_dssp HHTSCCSEEEECSC
T ss_pred cCCCCceEEEeccC
Confidence 25899999987
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=95.83 E-value=0.014 Score=48.29 Aligned_cols=97 Identities=13% Similarity=0.058 Sum_probs=58.6
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCe-EEEEecC--CCHHHHHHHh
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRA-HYVSFDL--RHKAQVLQAL 81 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~Dl--~d~~~l~~~~ 81 (485)
..+.+|+|+| +|-+|...++.+...| .+|+++++.+.+ ++. .+.-+. ..+..|- .+..+..+.+
T Consensus 25 ~~g~~vlV~G-~G~vG~~~~~~ak~~G-a~vi~v~~~~~r----------~~~-a~~~ga~~~~~~~~~~~~~~~~~~~~ 91 (170)
T d1e3ja2 25 QLGTTVLVIG-AGPIGLVSVLAAKAYG-AFVVCTARSPRR----------LEV-AKNCGADVTLVVDPAKEEESSIIERI 91 (170)
T ss_dssp CTTCEEEEEC-CSHHHHHHHHHHHHTT-CEEEEEESCHHH----------HHH-HHHTTCSEEEECCTTTSCHHHHHHHH
T ss_pred CCCCEEEEEc-ccccchhhHhhHhhhc-ccccccchHHHH----------HHH-HHHcCCcEEEeccccccccchhhhhh
Confidence 3567999997 7999999999999999 689999877541 111 111122 2222232 2344443333
Q ss_pred -----cCCCEEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEec
Q 047227 82 -----QGAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTS 130 (485)
Q Consensus 82 -----~~~d~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~S 130 (485)
.++|+||.+++.. ......++.++..| +++.++
T Consensus 92 ~~~~g~g~D~vid~~g~~--------------~~~~~a~~~~~~~G--~iv~~G 129 (170)
T d1e3ja2 92 RSAIGDLPNVTIDCSGNE--------------KCITIGINITRTGG--TLMLVG 129 (170)
T ss_dssp HHHSSSCCSEEEECSCCH--------------HHHHHHHHHSCTTC--EEEECS
T ss_pred hcccccCCceeeecCCCh--------------HHHHHHHHHHhcCC--ceEEEe
Confidence 3599999998721 11223455565555 777766
|
| >d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Thermotoga maritima [TaxId: 2336]
Probab=95.65 E-value=0.0054 Score=51.37 Aligned_cols=34 Identities=15% Similarity=0.160 Sum_probs=28.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEeec
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADL 40 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r 40 (485)
|+||.|.|||||+|..+++.|.++.+.++..+..
T Consensus 1 MikVaIvGATGyvG~eLirlL~~HP~~ei~~l~s 34 (176)
T d1vkna1 1 MIRAGIIGATGYTGLELVRLLKNHPEAKITYLSS 34 (176)
T ss_dssp CEEEEEESTTSHHHHHHHHHHHHCTTEEEEEEEC
T ss_pred CeEEEEECCCcHHHHHHHHHHHhCCCceEEEeec
Confidence 5799999999999999999999877566666643
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=95.64 E-value=0.0029 Score=53.28 Aligned_cols=34 Identities=21% Similarity=0.169 Sum_probs=30.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCc
Q 047227 8 RLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDS 43 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~ 43 (485)
|+|.|.| +|.+|..++..|.++| ++|.+++|.+.
T Consensus 2 k~iaIiG-aG~~G~~~A~~l~~~G-~~V~~~~r~~~ 35 (184)
T d1bg6a2 2 KTYAVLG-LGNGGHAFAAYLALKG-QSVLAWDIDAQ 35 (184)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHTT-CEEEEECSCHH
T ss_pred CEEEEEC-ccHHHHHHHHHHHHCC-CEEEEEECCHH
Confidence 7999999 5999999999999999 59999998754
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=95.49 E-value=0.013 Score=48.59 Aligned_cols=74 Identities=15% Similarity=0.093 Sum_probs=51.6
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCC
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGA 84 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 84 (485)
.++.+|+|.|+ |-+|...++.+...| .+++++++...+. +....-+... ..|..+.+......+++
T Consensus 29 ~~G~~VlI~Ga-G~vG~~a~qlak~~G-a~~i~~~~~~~~~-----------~~a~~lGad~-~i~~~~~~~~~~~~~~~ 94 (168)
T d1uufa2 29 GPGKKVGVVGI-GGLGHMGIKLAHAMG-AHVVAFTTSEAKR-----------EAAKALGADE-VVNSRNADEMAAHLKSF 94 (168)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTT-CEEEEEESSGGGH-----------HHHHHHTCSE-EEETTCHHHHHTTTTCE
T ss_pred CCCCEEEEecc-chHHHHHHHHhhccc-ccchhhccchhHH-----------HHHhccCCcE-EEECchhhHHHHhcCCC
Confidence 45789999985 889999999999999 5777777654421 1111112332 24667777666667789
Q ss_pred CEEEEcCC
Q 047227 85 EVVFHMAA 92 (485)
Q Consensus 85 d~Vih~aa 92 (485)
|+||.+.+
T Consensus 95 D~vid~~g 102 (168)
T d1uufa2 95 DFILNTVA 102 (168)
T ss_dssp EEEEECCS
T ss_pred ceeeeeee
Confidence 99999987
|
| >d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.48 E-value=0.015 Score=44.92 Aligned_cols=37 Identities=22% Similarity=0.266 Sum_probs=32.5
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCc
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDS 43 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~ 43 (485)
..+++++|.| .|++|-.++..|.+.| .+|+++.+.+.
T Consensus 20 ~~p~~v~IiG-gG~ig~E~A~~l~~~G-~~Vtlve~~~~ 56 (117)
T d1ebda2 20 EVPKSLVVIG-GGYIGIELGTAYANFG-TKVTILEGAGE 56 (117)
T ss_dssp SCCSEEEEEC-CSHHHHHHHHHHHHTT-CEEEEEESSSS
T ss_pred hcCCeEEEEC-CCccceeeeeeecccc-cEEEEEEecce
Confidence 3457999998 7999999999999999 69999988765
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.46 E-value=0.0076 Score=50.07 Aligned_cols=76 Identities=8% Similarity=-0.091 Sum_probs=48.7
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCC
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGA 84 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 84 (485)
.++.+|+|.|+ |-+|...++.+...| .+|+++++++.+. +. ...-++..+.-...+.+...+..+++
T Consensus 26 ~~g~~vlI~Ga-G~vG~~a~q~ak~~G-~~vi~~~~~~~k~----------~~-a~~lGa~~~i~~~~~~~~~~~~~~~~ 92 (168)
T d1piwa2 26 GPGKKVGIVGL-GGIGSMGTLISKAMG-AETYVISRSSRKR----------ED-AMKMGADHYIATLEEGDWGEKYFDTF 92 (168)
T ss_dssp STTCEEEEECC-SHHHHHHHHHHHHHT-CEEEEEESSSTTH----------HH-HHHHTCSEEEEGGGTSCHHHHSCSCE
T ss_pred CCCCEEEEECC-CCcchhHHHHhhhcc-ccccccccchhHH----------HH-hhccCCcEEeeccchHHHHHhhhccc
Confidence 45689999985 999999999888899 6899988865421 11 11112322221122333344555679
Q ss_pred CEEEEcCCC
Q 047227 85 EVVFHMAAP 93 (485)
Q Consensus 85 d~Vih~aa~ 93 (485)
|+|+.+.+.
T Consensus 93 d~vi~~~~~ 101 (168)
T d1piwa2 93 DLIVVCASS 101 (168)
T ss_dssp EEEEECCSC
T ss_pred ceEEEEecC
Confidence 999998773
|
| >d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative semialdehyde dehydrogenase species: Rice (Oryza sativa) [TaxId: 4530]
Probab=95.44 E-value=0.0069 Score=51.19 Aligned_cols=36 Identities=19% Similarity=0.398 Sum_probs=29.9
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeec
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADL 40 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r 40 (485)
.++.||.|.|+|||+|..+++.|.++.+.++..+..
T Consensus 3 ~~kikVaIlGATGyvG~elirLL~~HP~~ei~~l~S 38 (183)
T d2cvoa1 3 GEEVRIAVLGASGYTGAEIVRLLANHPQFRIKVMTA 38 (183)
T ss_dssp SSCEEEEEESCSSHHHHHHHHHHTTCSSEEEEEEEC
T ss_pred CCccEEEEECcccHHHHHHHHHHHhCCCceEEEEec
Confidence 456799999999999999999999987566666643
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.43 E-value=0.0078 Score=50.47 Aligned_cols=37 Identities=22% Similarity=0.277 Sum_probs=31.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCc
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDS 43 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~ 43 (485)
.+.+|||+||+|-+|...++.+...| .+|+.+.+++.
T Consensus 31 ~g~~VLI~gaaGGVG~~aiQlak~~G-a~Viat~~s~~ 67 (176)
T d1xa0a2 31 ERGPVLVTGATGGVGSLAVSMLAKRG-YTVEASTGKAA 67 (176)
T ss_dssp GGCCEEESSTTSHHHHHHHHHHHHTT-CCEEEEESCTT
T ss_pred CCCEEEEEeccchHHHHHHHHHHHcC-CceEEecCchH
Confidence 35689999999999999999999999 68888877654
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=95.39 E-value=0.011 Score=46.57 Aligned_cols=69 Identities=17% Similarity=0.176 Sum_probs=50.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHH-hcCCCE
Q 047227 8 RLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQA-LQGAEV 86 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~-~~~~d~ 86 (485)
|+++|.| -|-+|..+++.|. | ..|.+++..+. ....+...++.++.||.+|++.+.++ ++.++.
T Consensus 1 kHivI~G-~g~~g~~l~~~L~--~-~~i~vi~~d~~-----------~~~~~~~~~~~~i~Gd~~~~~~L~~a~i~~A~~ 65 (129)
T d2fy8a1 1 RHVVICG-WSESTLECLRELR--G-SEVFVLAEDEN-----------VRKKVLRSGANFVHGDPTRVSDLEKANVRGARA 65 (129)
T ss_dssp CCEEEES-CCHHHHHHHHTSC--G-GGEEEEESCTT-----------HHHHHHHTTCEEEESCTTSHHHHHHTTCTTCSE
T ss_pred CEEEEEC-CCHHHHHHHHHHc--C-CCCEEEEcchH-----------HHHHHHhcCccccccccCCHHHHHHhhhhcCcE
Confidence 4688887 6889999999984 4 35666766543 12223346899999999999988886 467999
Q ss_pred EEEcC
Q 047227 87 VFHMA 91 (485)
Q Consensus 87 Vih~a 91 (485)
++-+.
T Consensus 66 vi~~~ 70 (129)
T d2fy8a1 66 VIVNL 70 (129)
T ss_dssp EEECC
T ss_pred EEEec
Confidence 88654
|
| >d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.33 E-value=0.016 Score=45.27 Aligned_cols=35 Identities=17% Similarity=0.134 Sum_probs=30.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCC
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSD 42 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~ 42 (485)
.+++++|.| .|+||-.++..|.+.| .+|+++.+.+
T Consensus 19 ~P~~vvIIG-gG~iG~E~A~~l~~lG-~~Vtii~~~~ 53 (122)
T d1h6va2 19 CPGKTLVVG-ASYVALECAGFLAGIG-LDVTVMVRSI 53 (122)
T ss_dssp CCCSEEEEC-CSHHHHHHHHHHHHTT-CCEEEEESSS
T ss_pred CCCeEEEEC-CCccHHHHHHHHhhcC-CeEEEEEech
Confidence 457899998 8999999999999999 5999998753
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=95.25 E-value=0.0091 Score=49.59 Aligned_cols=77 Identities=14% Similarity=0.200 Sum_probs=49.1
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCe-EEEEecCCCH-HHHHHHh-
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRA-HYVSFDLRHK-AQVLQAL- 81 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~Dl~d~-~~l~~~~- 81 (485)
.++.+|+|+|++|-+|...+..+...|...|.+.++++.+ .+..+.-++ ..+..+-.|. +++.+..
T Consensus 26 ~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~-----------~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~ 94 (170)
T d1jvba2 26 DPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEA-----------VEAAKRAGADYVINASMQDPLAEIRRITE 94 (170)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHH-----------HHHHHHHTCSEEEETTTSCHHHHHHHHTT
T ss_pred CCCCEEEEEeccccceeeeeecccccccccccccccchhh-----------HHHHHHcCCceeeccCCcCHHHHHHHHhh
Confidence 3567999999999999999999998885688888776431 111111122 2333332332 2333333
Q ss_pred -cCCCEEEEcCC
Q 047227 82 -QGAEVVFHMAA 92 (485)
Q Consensus 82 -~~~d~Vih~aa 92 (485)
+++|+||.+++
T Consensus 95 ~~~~d~vid~~g 106 (170)
T d1jvba2 95 SKGVDAVIDLNN 106 (170)
T ss_dssp TSCEEEEEESCC
T ss_pred cccchhhhcccc
Confidence 24899999987
|
| >d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Escherichia coli [TaxId: 562]
Probab=95.25 E-value=0.0053 Score=50.72 Aligned_cols=98 Identities=13% Similarity=0.161 Sum_probs=56.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEE-EeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCCC
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVR-IADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGAE 85 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~-~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~d 85 (485)
.+||.|.|++|-.|+.+++.+.+....++. ++++..+........ .+.. ....++.. .-| +..+++.+|
T Consensus 4 ~ikI~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~~~~~~g~d~~--~~~~-~~~~~~~~-~~~------~~~~~~~~D 73 (162)
T d1diha1 4 NIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAG--ELAG-AGKTGVTV-QSS------LDAVKDDFD 73 (162)
T ss_dssp BEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTT--CSSS-SSCCSCCE-ESC------STTTTTSCS
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecccchhccchhh--hhhc-cccCCcee-ecc------HHHHhcccc
Confidence 479999999999999999999887534443 334433221111000 0000 00111111 222 334567899
Q ss_pred EEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEec
Q 047227 86 VVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTS 130 (485)
Q Consensus 86 ~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~S 130 (485)
+||.+.- | .++...++.|.+.++ .+|.-+
T Consensus 74 ViIDFs~-------p--------~~~~~~~~~a~~~~~-~~ViGT 102 (162)
T d1diha1 74 VFIDFTR-------P--------EGTLNHLAFCRQHGK-GMVIGT 102 (162)
T ss_dssp EEEECSC-------H--------HHHHHHHHHHHHTTC-EEEECC
T ss_pred eEEEecc-------H--------HHHHHHHHHHHhccc-eeEEec
Confidence 9998863 2 344568889999986 555433
|
| >d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=95.22 E-value=0.0087 Score=42.54 Aligned_cols=38 Identities=24% Similarity=0.283 Sum_probs=32.5
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCc
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDS 43 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~ 43 (485)
.++++|||+||+|-+|...++.+...| .+|.++.+++.
T Consensus 30 ~~~~~vlI~gasGgVG~~aiQlak~~G-~~Vi~~t~s~~ 67 (77)
T d1o8ca2 30 PQDGEIVVTGASGGVGSTAVALLHKLG-YQVVAVSGRES 67 (77)
T ss_dssp GGGCEEEESSTTSHHHHHHHHHHHHTT-CCEEEEESCGG
T ss_pred cCCCcEEEEeCCCcHHHHHHHHHHHcC-CeEEEEECCHH
Confidence 356799999999999999999999999 68888877653
|
| >d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.21 E-value=0.023 Score=44.24 Aligned_cols=36 Identities=11% Similarity=0.203 Sum_probs=31.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCc
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDS 43 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~ 43 (485)
.+++++|.| +|++|-.++..|.+.| .+|+++.+.+.
T Consensus 22 ~p~~~vIiG-~G~ig~E~A~~l~~lG-~~Vtii~~~~~ 57 (122)
T d1v59a2 22 IPKRLTIIG-GGIIGLEMGSVYSRLG-SKVTVVEFQPQ 57 (122)
T ss_dssp CCSEEEEEC-CSHHHHHHHHHHHHTT-CEEEEECSSSS
T ss_pred CCCeEEEEC-CCchHHHHHHHHHhhC-cceeEEEeccc
Confidence 357999998 8999999999999999 69999988765
|
| >d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=95.18 E-value=0.068 Score=43.33 Aligned_cols=24 Identities=21% Similarity=0.335 Sum_probs=21.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcC
Q 047227 8 RLCVVTGGRGFAARHLVEMLIRYD 31 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~~G 31 (485)
=+|.|.|||||+|..+++.|.++.
T Consensus 2 ~kVaIvGATGyvG~eLirlL~~H~ 25 (154)
T d2gz1a1 2 YTVAVVGATGAVGAQMIKMLEEST 25 (154)
T ss_dssp EEEEEETTTSHHHHHHHHHHHTCC
T ss_pred CEEEEECCCcHHHHHHHHHHHcCC
Confidence 379999999999999999988875
|
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=95.11 E-value=0.0094 Score=49.10 Aligned_cols=65 Identities=12% Similarity=0.186 Sum_probs=45.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCCCEE
Q 047227 8 RLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGAEVV 87 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~d~V 87 (485)
|||-|.| .|.+|+.+++.|+++| ++|++.||.+... +.+...+... ..+ ..++++++|+|
T Consensus 1 MkIgiIG-lG~MG~~~A~~L~~~G-~~V~~~d~~~~~~-----------~~~~~~~~~~----~~~---~~e~~~~~d~i 60 (161)
T d1vpda2 1 MKVGFIG-LGIMGKPMSKNLLKAG-YSLVVSDRNPEAI-----------ADVIAAGAET----AST---AKAIAEQCDVI 60 (161)
T ss_dssp CEEEEEC-CSTTHHHHHHHHHHTT-CEEEEECSCHHHH-----------HHHHHTTCEE----CSS---HHHHHHHCSEE
T ss_pred CEEEEEe-hhHHHHHHHHHHHHCC-CeEEEEeCCcchh-----------HHHHHhhhhh----ccc---HHHHHhCCCeE
Confidence 6899997 8999999999999999 6999999876521 1111222222 122 34566779999
Q ss_pred EEcCC
Q 047227 88 FHMAA 92 (485)
Q Consensus 88 ih~aa 92 (485)
|-+-.
T Consensus 61 i~~v~ 65 (161)
T d1vpda2 61 ITMLP 65 (161)
T ss_dssp EECCS
T ss_pred EEEcC
Confidence 97754
|
| >d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=94.89 E-value=0.039 Score=42.65 Aligned_cols=36 Identities=19% Similarity=0.155 Sum_probs=31.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCc
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDS 43 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~ 43 (485)
.+++++|.| +|+||-.++..|.+.| .+|+++.+...
T Consensus 21 ~p~~i~IiG-~G~ig~E~A~~l~~~G-~~Vtiv~~~~~ 56 (119)
T d3lada2 21 VPGKLGVIG-AGVIGLELGSVWARLG-AEVTVLEAMDK 56 (119)
T ss_dssp CCSEEEEEC-CSHHHHHHHHHHHHTT-CEEEEEESSSS
T ss_pred CCCeEEEEC-CChHHHHHHHHHHHcC-CceEEEEeecc
Confidence 457899998 8999999999999999 69999988765
|
| >d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=94.84 E-value=0.042 Score=42.61 Aligned_cols=61 Identities=7% Similarity=0.041 Sum_probs=41.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCC--ccchhhhhhhhcCCCeEEEE
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEP--HEEQGILGEALRSGRAHYVS 68 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~--~~~~~~~~~~~~~~~v~~~~ 68 (485)
+.++++|.| .|++|-.++..|.++| .+|+++.+.+...... ..-...+.+.+...+++++.
T Consensus 29 ~~~~vvIIG-gG~iG~E~A~~l~~~g-~~Vtli~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~ 91 (121)
T d1d7ya2 29 PQSRLLIVG-GGVIGLELAATARTAG-VHVSLVETQPRLMSRAAPATLADFVARYHAAQGVDLRF 91 (121)
T ss_dssp TTCEEEEEC-CSHHHHHHHHHHHHTT-CEEEEEESSSSTTTTTSCHHHHHHHHHHHHTTTCEEEE
T ss_pred cCCeEEEEC-cchhHHHHHHHhhccc-ceEEEEeeccccccccCCHHHHHHHHHHHHHCCcEEEe
Confidence 357899988 8999999999999999 5999999886532211 11123334444455565543
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=94.82 E-value=0.053 Score=45.23 Aligned_cols=38 Identities=16% Similarity=0.029 Sum_probs=31.6
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCc
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDS 43 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~ 43 (485)
..+.+|||+|+ |-+|...++.+...|..+|+++++++.
T Consensus 27 ~~G~~VlV~Ga-G~iG~~~~~~ak~~Ga~~Vi~~~~~~~ 64 (182)
T d1vj0a2 27 FAGKTVVIQGA-GPLGLFGVVIARSLGAENVIVIAGSPN 64 (182)
T ss_dssp CBTCEEEEECC-SHHHHHHHHHHHHTTBSEEEEEESCHH
T ss_pred CCCCEEEEECC-Cccchhheecccccccccccccccccc
Confidence 45689999985 899999999999999447888888654
|
| >d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=94.73 E-value=0.027 Score=43.32 Aligned_cols=37 Identities=16% Similarity=0.204 Sum_probs=32.1
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCc
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDS 43 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~ 43 (485)
..+++++|.| .|++|-.++..|.+.| .+|+++.+.+.
T Consensus 19 ~~p~~vvIiG-gG~~G~E~A~~l~~~g-~~Vtlve~~~~ 55 (115)
T d1lvla2 19 ALPQHLVVVG-GGYIGLELGIAYRKLG-AQVSVVEARER 55 (115)
T ss_dssp SCCSEEEEEC-CSHHHHHHHHHHHHHT-CEEEEECSSSS
T ss_pred cCCCeEEEEC-CCHHHHHHHHHHhhcc-cceEEEeeecc
Confidence 3457999997 8999999999999999 59999988765
|
| >d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=94.65 E-value=0.056 Score=41.97 Aligned_cols=36 Identities=22% Similarity=0.317 Sum_probs=31.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCc
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDS 43 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~ 43 (485)
..++|+|.| .|++|-.++..|.+.| .+|+++.+.+.
T Consensus 29 ~~k~vvViG-gG~iG~E~A~~l~~~g-~~Vtlie~~~~ 64 (123)
T d1nhpa2 29 EVNNVVVIG-SGYIGIEAAEAFAKAG-KKVTVIDILDR 64 (123)
T ss_dssp TCCEEEEEC-CSHHHHHHHHHHHHTT-CEEEEEESSSS
T ss_pred CCCEEEEEC-ChHHHHHHHHHhhccc-eEEEEEEecCc
Confidence 457999997 8999999999999999 59999988764
|
| >d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=94.63 E-value=0.033 Score=42.99 Aligned_cols=35 Identities=17% Similarity=0.316 Sum_probs=31.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCc
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDS 43 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~ 43 (485)
+++|+|.| .|++|-.++..|.+.| .+|+++.|.+.
T Consensus 22 p~~v~IiG-gG~iG~E~A~~l~~~g-~~Vtlv~~~~~ 56 (117)
T d1onfa2 22 SKKIGIVG-SGYIAVELINVIKRLG-IDSYIFARGNR 56 (117)
T ss_dssp CSEEEEEC-CSHHHHHHHHHHHTTT-CEEEEECSSSS
T ss_pred CCEEEEEC-CchHHHHHHHHHHhcc-ccceeeehhcc
Confidence 57999998 7999999999999999 69999998765
|
| >d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.32 E-value=0.13 Score=40.58 Aligned_cols=72 Identities=15% Similarity=0.199 Sum_probs=47.6
Q ss_pred EEEEEcCCCchHHHHHHHHHhcCCceEEE-eecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCCCEE
Q 047227 9 LCVVTGGRGFAARHLVEMLIRYDMFSVRI-ADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGAEVV 87 (485)
Q Consensus 9 ~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~-~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~d~V 87 (485)
||.|.|++|-.|+.+++.+.+....++.. +|+... .+. ....++|+|
T Consensus 1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~~~~d~~~~------------------------------~~~--~~~~~~Dvv 48 (135)
T d1yl7a1 1 RVGVLGAKGKVGATMVRAVAAADDLTLSAELDAGDP------------------------------LSL--LTDGNTEVV 48 (135)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTSEEEEEECTTCC------------------------------THH--HHTTTCSEE
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCc------------------------------hhh--hccccCCEE
Confidence 69999999999999999988765455443 222211 010 112468999
Q ss_pred EEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEE
Q 047227 88 FHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIY 128 (485)
Q Consensus 88 ih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~ 128 (485)
|.+..+.. +...++.|.+.|+ .+|.
T Consensus 49 IDFS~p~~---------------~~~~~~~~~~~~~-~~Vi 73 (135)
T d1yl7a1 49 IDFTHPDV---------------VMGNLEFLIDNGI-HAVV 73 (135)
T ss_dssp EECCCTTT---------------HHHHHHHHHHTTC-EEEE
T ss_pred EEcccHHH---------------HHHHHHHHHhcCC-CEEE
Confidence 99875322 3467888999987 4543
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=94.24 E-value=0.054 Score=44.55 Aligned_cols=36 Identities=17% Similarity=0.220 Sum_probs=29.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCC-ceEEEeecCCc
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDM-FSVRIADLSDS 43 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~-~~V~~~~r~~~ 43 (485)
|++|+|.| .|.+|..+++.|.+.|+ .+|+++|+++.
T Consensus 1 Mk~I~IIG-~G~mG~sla~~L~~~g~~~~I~~~D~~~~ 37 (171)
T d2g5ca2 1 MQNVLIVG-VGFMGGSFAKSLRRSGFKGKIYGYDINPE 37 (171)
T ss_dssp CCEEEEES-CSHHHHHHHHHHHHTTCCSEEEEECSCHH
T ss_pred CCEEEEEc-cCHHHHHHHHHHHhcCCCeEEEEEECChH
Confidence 46899997 79999999999999984 26888887643
|
| >d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=94.22 E-value=0.034 Score=42.80 Aligned_cols=35 Identities=14% Similarity=0.240 Sum_probs=31.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCc
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDS 43 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~ 43 (485)
+++++|.| .|++|-.++..|.+.| .+|+++.+.+.
T Consensus 21 p~~vvIiG-gG~ig~E~A~~l~~~G-~~Vtlve~~~~ 55 (116)
T d1gesa2 21 PERVAVVG-AGYIGVELGGVINGLG-AKTHLFEMFDA 55 (116)
T ss_dssp CSEEEEEC-CSHHHHHHHHHHHHTT-CEEEEECSSSS
T ss_pred CCEEEEEC-CChhhHHHHHHhhccc-cEEEEEeecch
Confidence 47899998 8999999999999999 59999998765
|
| >d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=94.12 E-value=0.037 Score=43.00 Aligned_cols=35 Identities=17% Similarity=0.307 Sum_probs=30.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCc
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDS 43 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~ 43 (485)
.++++|.| .|++|-.++..|.+.| .+|+++.+.+.
T Consensus 32 ~~~vvIiG-gG~iG~E~A~~l~~~g-~~Vtlv~~~~~ 66 (122)
T d1xhca2 32 SGEAIIIG-GGFIGLELAGNLAEAG-YHVKLIHRGAM 66 (122)
T ss_dssp HSEEEEEE-CSHHHHHHHHHHHHTT-CEEEEECSSSC
T ss_pred CCcEEEEC-CcHHHHHHHHHhhccc-ceEEEEecccc
Confidence 36899988 8999999999999999 69999988754
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=94.12 E-value=0.099 Score=44.12 Aligned_cols=75 Identities=11% Similarity=0.003 Sum_probs=49.0
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCC---HHHHHHHh
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRH---KAQVLQAL 81 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d---~~~l~~~~ 81 (485)
..+.+|||.| +|-+|...+..+...|..+|.++++.+.+ .+....-+...+. |-.+ .+.+.++.
T Consensus 24 ~~G~tVlV~G-aG~vGl~a~~~ak~~ga~~Vi~~d~~~~r-----------l~~a~~~Ga~~~~-~~~~~~~~~~i~~~t 90 (195)
T d1kola2 24 GPGSTVYVAG-AGPVGLAAAASARLLGAAVVIVGDLNPAR-----------LAHAKAQGFEIAD-LSLDTPLHEQIAALL 90 (195)
T ss_dssp CTTCEEEEEC-CSHHHHHHHHHHHHTTCSEEEEEESCHHH-----------HHHHHHTTCEEEE-TTSSSCHHHHHHHHH
T ss_pred CCCCEEEEEC-cCHHHHHHHHHHHhhcccceeeecccchh-----------hHhhhhccccEEE-eCCCcCHHHHHHHHh
Confidence 4567999997 59999888888888885688888876541 1111223455443 3222 23445554
Q ss_pred c--CCCEEEEcCC
Q 047227 82 Q--GAEVVFHMAA 92 (485)
Q Consensus 82 ~--~~d~Vih~aa 92 (485)
. ++|++|.+.+
T Consensus 91 ~g~g~D~vid~vG 103 (195)
T d1kola2 91 GEPEVDCAVDAVG 103 (195)
T ss_dssp SSSCEEEEEECCC
T ss_pred CCCCcEEEEECcc
Confidence 4 5999999988
|
| >d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=94.10 E-value=0.052 Score=45.39 Aligned_cols=62 Identities=15% Similarity=0.076 Sum_probs=46.1
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCC
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGA 84 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 84 (485)
..+++|.|.| .|-||+.+++.|..-| .+|.+.++.+.... ..+ .++++++++.+
T Consensus 40 l~gk~vgIiG-~G~IG~~va~~l~~~g-~~v~~~d~~~~~~~-----------------~~~-------~~~l~ell~~s 93 (181)
T d1qp8a1 40 IQGEKVAVLG-LGEIGTRVGKILAALG-AQVRGFSRTPKEGP-----------------WRF-------TNSLEEALREA 93 (181)
T ss_dssp CTTCEEEEES-CSTHHHHHHHHHHHTT-CEEEEECSSCCCSS-----------------SCC-------BSCSHHHHTTC
T ss_pred ccCceEEEec-cccccccceeeeeccc-cccccccccccccc-----------------eee-------eechhhhhhcc
Confidence 4578999998 8999999999999999 59999987653110 000 11367788889
Q ss_pred CEEEEcCC
Q 047227 85 EVVFHMAA 92 (485)
Q Consensus 85 d~Vih~aa 92 (485)
|+|+-+..
T Consensus 94 Div~~~~p 101 (181)
T d1qp8a1 94 RAAVCALP 101 (181)
T ss_dssp SEEEECCC
T ss_pred chhhcccc
Confidence 98886655
|
| >d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.08 E-value=0.063 Score=41.78 Aligned_cols=35 Identities=17% Similarity=0.237 Sum_probs=31.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCc
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDS 43 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~ 43 (485)
+++++|.| .|++|-.++..|.+.| .+|+++.|.+.
T Consensus 22 pk~vvIvG-gG~iG~E~A~~l~~~G-~~Vtlv~~~~~ 56 (125)
T d3grsa2 22 PGRSVIVG-AGYIAVEMAGILSALG-SKTSLMIRHDK 56 (125)
T ss_dssp CSEEEEEC-CSHHHHHHHHHHHHTT-CEEEEECSSSS
T ss_pred CCEEEEEc-CCccHHHHHHHHhcCC-cEEEEEeeccc
Confidence 47999998 7899999999999999 69999998765
|
| >d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Molybdenum cofactor biosynthesis protein MoeB domain: Molybdenum cofactor biosynthesis protein MoeB species: Escherichia coli [TaxId: 562]
Probab=94.06 E-value=0.26 Score=42.99 Aligned_cols=113 Identities=12% Similarity=0.140 Sum_probs=68.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccc------------hhhhhhhhc--CCCeEEEEecCC
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEE------------QGILGEALR--SGRAHYVSFDLR 72 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~------------~~~~~~~~~--~~~v~~~~~Dl~ 72 (485)
+.+|+|.| .|-+|++++..|...|--+++++|.+.-...+...+ .......+. .+.++....+..
T Consensus 30 ~~~VliiG-~GglGs~va~~La~~Gvg~i~lvD~D~Ve~sNL~RQ~l~~~~diG~~K~~~a~~~l~~~np~~~i~~~~~~ 108 (247)
T d1jw9b_ 30 DSRVLIVG-LGGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPVNAL 108 (247)
T ss_dssp HCEEEEEC-CSHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEECSC
T ss_pred CCCEEEEC-CCHHHHHHHHHHHHcCCCeEEEECCcccchhhhhhhccccHhhcCchHHHHHHHHHHHhhcccchhhhhhh
Confidence 46899999 778999999999999976899998653211111110 000111111 355555544432
Q ss_pred -CHHHHHHHhcCCCEEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCcccc
Q 047227 73 -HKAQVLQALQGAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVV 135 (485)
Q Consensus 73 -d~~~l~~~~~~~d~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy 135 (485)
+.+.....+.+.|+|+.+.. |......+-++|++.++ .+|+.+....+
T Consensus 109 ~~~~~~~~~~~~~divid~~d--------------~~~~~~~in~~~~~~~i-p~i~g~~~~~~ 157 (247)
T d1jw9b_ 109 LDDAELAALIAEHDLVLDCTD--------------NVAVRNQLNAGCFAAKV-PLVSGAAIRME 157 (247)
T ss_dssp CCHHHHHHHHHTSSEEEECCS--------------SHHHHHHHHHHHHHHTC-CEEEEEEEBTE
T ss_pred hhhccccccccccceeeeccc--------------hhhhhhhHHHHHHHhCC-Ccccccccccc
Confidence 44556677788999997653 22233456777888886 47765544433
|
| >d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=93.97 E-value=0.064 Score=41.81 Aligned_cols=37 Identities=11% Similarity=0.197 Sum_probs=32.3
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCc
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDS 43 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~ 43 (485)
..+++++|.| .|+||-.++..|.+.| .+|+++.+.+.
T Consensus 24 ~~p~~vvIiG-gG~IG~E~A~~~~~~G-~~Vtive~~~~ 60 (125)
T d1ojta2 24 EVPGKLLIIG-GGIIGLEMGTVYSTLG-SRLDVVEMMDG 60 (125)
T ss_dssp CCCSEEEEES-CSHHHHHHHHHHHHHT-CEEEEECSSSS
T ss_pred ccCCeEEEEC-CCHHHHHHHHHhhcCC-CEEEEEEeecc
Confidence 3457999998 8999999999999999 69999988764
|
| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.97 E-value=0.062 Score=45.09 Aligned_cols=74 Identities=14% Similarity=0.001 Sum_probs=44.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCH---HHHHHHh-cC
Q 047227 8 RLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHK---AQVLQAL-QG 83 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~---~~l~~~~-~~ 83 (485)
.+|||+||+|-+|+..++.+...|...|.+++.++... .......+.+. ..|.+++ +.+.++. ++
T Consensus 32 etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~----------~~l~~~~gad~-vi~~~~~~~~~~~~~~~~~G 100 (187)
T d1vj1a2 32 QTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKC----------LFLTSELGFDA-AVNYKTGNVAEQLREACPGG 100 (187)
T ss_dssp CEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHH----------HHHHHHSCCSE-EEETTSSCHHHHHHHHCTTC
T ss_pred CEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHH----------hhhhhcccceE-EeeccchhHHHHHHHHhccC
Confidence 68999999999999999999989944555555443211 11111112222 2244432 2333333 36
Q ss_pred CCEEEEcCC
Q 047227 84 AEVVFHMAA 92 (485)
Q Consensus 84 ~d~Vih~aa 92 (485)
+|+|+++.+
T Consensus 101 vDvv~D~vG 109 (187)
T d1vj1a2 101 VDVYFDNVG 109 (187)
T ss_dssp EEEEEESSC
T ss_pred ceEEEecCC
Confidence 999999886
|
| >d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Thermotoga maritima [TaxId: 2336]
Probab=93.94 E-value=0.23 Score=35.84 Aligned_cols=86 Identities=12% Similarity=0.004 Sum_probs=57.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCCCE
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGAEV 86 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~d~ 86 (485)
.|||-++|-.|-==+.|++.|.++| +.|.+.|+..+. ....+...++++..+. +++ -++++|.
T Consensus 1 ~~~ihfiGIgG~GMs~LA~~L~~~G-~~VsGSD~~~~~----------~t~~L~~~Gi~i~~gh--~~~----~i~~~d~ 63 (89)
T d1j6ua1 1 HMKIHFVGIGGIGMSAVALHEFSNG-NDVYGSNIEETE----------RTAYLRKLGIPIFVPH--SAD----NWYDPDL 63 (89)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEECSSCCH----------HHHHHHHTTCCEESSC--CTT----SCCCCSE
T ss_pred CcEEEEEeECHHHHHHHHHHHHhCC-CeEEEEeCCCCh----------hHHHHHHCCCeEEeee--ccc----ccCCCCE
Confidence 3789999866655567999999999 699999976531 2233555677776552 211 2367899
Q ss_pred EEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCC
Q 047227 87 VFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVK 124 (485)
Q Consensus 87 Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~ 124 (485)
||.-.|... ++| -+.+|++.|++
T Consensus 64 vV~SsAI~~--~np-------------el~~A~~~gIp 86 (89)
T d1j6ua1 64 VIKTPAVRD--DNP-------------EIVRARMERVP 86 (89)
T ss_dssp EEECTTCCT--TCH-------------HHHHHHHTTCC
T ss_pred EEEecCcCC--CCH-------------HHHHHHHcCCC
Confidence 998888432 233 35667777753
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=93.93 E-value=0.013 Score=49.28 Aligned_cols=32 Identities=22% Similarity=0.208 Sum_probs=28.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCceEEEeecC
Q 047227 8 RLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLS 41 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~ 41 (485)
|+|.|.| +|-.|.+++..|.+.| ++|++..|.
T Consensus 1 MkI~ViG-aG~~GtalA~~la~~g-~~V~l~~r~ 32 (180)
T d1txga2 1 MIVSILG-AGAMGSALSVPLVDNG-NEVRIWGTE 32 (180)
T ss_dssp CEEEEES-CCHHHHHHHHHHHHHC-CEEEEECCG
T ss_pred CEEEEEC-CCHHHHHHHHHHHHCC-CEEEEEEec
Confidence 7899998 7999999999999999 599998774
|
| >d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=93.73 E-value=0.05 Score=42.30 Aligned_cols=36 Identities=17% Similarity=0.262 Sum_probs=32.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCc
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDS 43 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~ 43 (485)
.+++++|.| .|++|-.++..|.+.| .+|+++.|.+.
T Consensus 24 ~p~~~viiG-~G~iglE~A~~~~~~G-~~Vtvi~~~~~ 59 (123)
T d1dxla2 24 IPKKLVVIG-AGYIGLEMGSVWGRIG-SEVTVVEFASE 59 (123)
T ss_dssp CCSEEEESC-CSHHHHHHHHHHHHHT-CEEEEECSSSS
T ss_pred cCCeEEEEc-cchHHHHHHHHHHhcC-CeEEEEEEccc
Confidence 457899998 8999999999999999 69999998765
|
| >d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=93.58 E-value=0.0098 Score=49.88 Aligned_cols=35 Identities=26% Similarity=0.280 Sum_probs=31.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCc
Q 047227 8 RLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDS 43 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~ 43 (485)
.+|||+||+|-+|...++.+...| .+|+++.+++.
T Consensus 33 ~~vlV~gasGGVG~~aiQlAk~~G-a~Via~~~~~~ 67 (177)
T d1o89a2 33 GEIVVTGASGGVGSTAVALLHKLG-YQVVAVSGRES 67 (177)
T ss_dssp CEEEESSTTSHHHHHHHHHHHHTT-CCEEEEESCGG
T ss_pred CcEEEEEccccchHHHHHHHHHcC-CCeEEEecchh
Confidence 489999999999999999999999 68888887654
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=93.58 E-value=0.46 Score=34.71 Aligned_cols=72 Identities=18% Similarity=0.242 Sum_probs=48.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCCC
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGAE 85 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~d 85 (485)
..++|.+.|-.|--=+.+++.|.++| +.|.+.|+..+. ....+...++.+..++-. +.++++|
T Consensus 7 ~~~~ihfiGigG~GMs~LA~~L~~~G-~~VsGSD~~~~~----------~~~~L~~~Gi~v~~g~~~------~~i~~~d 69 (96)
T d1p3da1 7 RVQQIHFIGIGGAGMSGIAEILLNEG-YQISGSDIADGV----------VTQRLAQAGAKIYIGHAE------EHIEGAS 69 (96)
T ss_dssp TCCEEEEETTTSTTHHHHHHHHHHHT-CEEEEEESCCSH----------HHHHHHHTTCEEEESCCG------GGGTTCS
T ss_pred hCCEEEEEEECHHHHHHHHHHHHhCC-CEEEEEeCCCCh----------hhhHHHHCCCeEEECCcc------ccCCCCC
Confidence 45789998755444478899999999 699999986442 122233457777665532 1246789
Q ss_pred EEEEcCCCC
Q 047227 86 VVFHMAAPN 94 (485)
Q Consensus 86 ~Vih~aa~~ 94 (485)
.||.-.|..
T Consensus 70 ~vV~S~AI~ 78 (96)
T d1p3da1 70 VVVVSSAIK 78 (96)
T ss_dssp EEEECTTSC
T ss_pred EEEECCCcC
Confidence 999887743
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=93.47 E-value=0.027 Score=47.61 Aligned_cols=78 Identities=18% Similarity=0.148 Sum_probs=48.7
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCcc---chhhhhhhhcCCCeEEEEecCCCHHHHHHHh
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHE---EQGILGEALRSGRAHYVSFDLRHKAQVLQAL 81 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~---~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~ 81 (485)
+.|+||.|.| +|.-|++++..|.+.| ++|++.+|.+........ ...++......+++.. .. ++.+++
T Consensus 5 ~~m~KI~ViG-aG~wGtAlA~~La~~g-~~V~l~~r~~~~~~~i~~~~~n~~yl~~~~l~~~i~~-t~------~l~~a~ 75 (189)
T d1n1ea2 5 LYLNKAVVFG-SGAFGTALAMVLSKKC-REVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITF-TS------DVEKAY 75 (189)
T ss_dssp CCEEEEEEEC-CSHHHHHHHHHHHTTE-EEEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEE-ES------CHHHHH
T ss_pred ceeceEEEEC-CCHHHHHHHHHHHHcC-CeEEEEEecHHHHHHHhhccccccccccccccccccc-ch------hhhhcc
Confidence 3456899998 8999999999999999 499999886542211000 0011111111223332 22 367788
Q ss_pred cCCCEEEEcC
Q 047227 82 QGAEVVFHMA 91 (485)
Q Consensus 82 ~~~d~Vih~a 91 (485)
+++|.||-+.
T Consensus 76 ~~ad~iiiav 85 (189)
T d1n1ea2 76 NGAEIILFVI 85 (189)
T ss_dssp TTCSCEEECS
T ss_pred CCCCEEEEcC
Confidence 9999998655
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=93.34 E-value=0.066 Score=44.30 Aligned_cols=76 Identities=14% Similarity=0.139 Sum_probs=47.6
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEE--ecCCC-HHHHHHHh
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVS--FDLRH-KAQVLQAL 81 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~Dl~d-~~~l~~~~ 81 (485)
.++.+|||.|+ |-+|...+..+...|..+|.++++.+.+. + ....-+..... .|-.| .+...+..
T Consensus 27 k~GdtVlV~Ga-GG~G~~~~~~~~~~g~~~Vi~~~~~~~k~----------~-~a~~~Ga~~~i~~~~~~~~~~~~~~~~ 94 (176)
T d2jhfa2 27 TQGSTCAVFGL-GGVGLSVIMGCKAAGAARIIGVDINKDKF----------A-KAKEVGATECVNPQDYKKPIQEVLTEM 94 (176)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGH----------H-HHHHTTCSEEECGGGCSSCHHHHHHHH
T ss_pred CCCCEEEEECC-CCcHHHHHHHHHHcCCceEEeecCcHHHH----------H-HHHHhCCeeEEecCCchhHHHHHHHHH
Confidence 45679999998 55899999999998866888888775421 1 11112233222 22222 23333333
Q ss_pred --cCCCEEEEcCC
Q 047227 82 --QGAEVVFHMAA 92 (485)
Q Consensus 82 --~~~d~Vih~aa 92 (485)
.++|+||.+.+
T Consensus 95 ~~~G~D~vid~~G 107 (176)
T d2jhfa2 95 SNGGVDFSFEVIG 107 (176)
T ss_dssp TTSCBSEEEECSC
T ss_pred hcCCCCEEEecCC
Confidence 36999999887
|
| >d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=93.23 E-value=0.07 Score=42.04 Aligned_cols=36 Identities=19% Similarity=0.348 Sum_probs=32.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCc
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDS 43 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~ 43 (485)
..++++|.| +|++|-.++..|.+.| .+|+++.+.+.
T Consensus 34 ~~k~v~VIG-gG~iG~E~A~~l~~~g-~~Vtvie~~~~ 69 (133)
T d1q1ra2 34 ADNRLVVIG-GGYIGLEVAATAIKAN-MHVTLLDTAAR 69 (133)
T ss_dssp TTCEEEEEC-CSHHHHHHHHHHHHTT-CEEEEECSSSS
T ss_pred cCCEEEEEC-CchHHHHHHHHHHhhC-cceeeeeeccc
Confidence 357999998 8999999999999999 69999998765
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=93.18 E-value=0.043 Score=45.60 Aligned_cols=75 Identities=16% Similarity=0.061 Sum_probs=48.3
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCC---HHHHHHHh
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRH---KAQVLQAL 81 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d---~~~l~~~~ 81 (485)
.++.+|+|.| .|-+|...++.+...|..+|+++++++.+. +....-++..+ .|.++ .+.+.++.
T Consensus 26 ~~g~~VlI~G-aG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~-----------~~a~~lGa~~~-i~~~~~~~~~~v~~~t 92 (174)
T d1jqba2 26 EMGSSVVVIG-IGAVGLMGIAGAKLRGAGRIIGVGSRPICV-----------EAAKFYGATDI-LNYKNGHIEDQVMKLT 92 (174)
T ss_dssp CTTCCEEEEC-CSHHHHHHHHHHHTTTCSCEEEECCCHHHH-----------HHHHHHTCSEE-ECGGGSCHHHHHHHHT
T ss_pred CCCCEEEEEc-CCcchhhhhhhhhcccccccccccchhhhH-----------HHHHhhCcccc-ccccchhHHHHHHHHh
Confidence 3567899997 599999999999999955788888765311 11111122222 23332 34455555
Q ss_pred c--CCCEEEEcCC
Q 047227 82 Q--GAEVVFHMAA 92 (485)
Q Consensus 82 ~--~~d~Vih~aa 92 (485)
. ++|+||.+++
T Consensus 93 ~g~G~D~vid~~g 105 (174)
T d1jqba2 93 NGKGVDRVIMAGG 105 (174)
T ss_dssp TTSCEEEEEECSS
T ss_pred hccCcceEEEccC
Confidence 3 4999999987
|
| >d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Diaminopimelic acid dehydrogenase (DAPDH) species: Corynebacterium glutamicum [TaxId: 1718]
Probab=93.08 E-value=0.25 Score=40.41 Aligned_cols=35 Identities=9% Similarity=0.076 Sum_probs=26.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEE-eecCC
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRI-ADLSD 42 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~-~~r~~ 42 (485)
++||.|.| +|.+|+.+++.|.+....+++. .++..
T Consensus 3 kirvgiiG-~G~ig~~~~~~l~~~~~~elvav~~~~~ 38 (170)
T d1f06a1 3 NIRVAIVG-YGNLGRSVEKLIAKQPDMDLVGIFSRRA 38 (170)
T ss_dssp CEEEEEEC-CSHHHHHHHHHHTTCSSEEEEEEEESSS
T ss_pred cceEEEEC-ChHHHHHHHHHHHhCCCcEEEEEEeccc
Confidence 47899998 7999999999998865455544 44443
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=93.07 E-value=0.14 Score=41.98 Aligned_cols=77 Identities=21% Similarity=0.196 Sum_probs=47.5
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhc--
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQ-- 82 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 82 (485)
.++.+|+|.| +|.+|...++.+...|...|.+.++.+.+ +....+....+.+..+=.+.+...+...
T Consensus 31 ~~g~~vli~G-aG~vG~~~~~~a~~~g~~~vv~~~~~~~k----------~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~ 99 (172)
T d1h2ba2 31 YPGAYVAIVG-VGGLGHIAVQLLKVMTPATVIALDVKEEK----------LKLAERLGADHVVDARRDPVKQVMELTRGR 99 (172)
T ss_dssp CTTCEEEEEC-CSHHHHHHHHHHHHHCCCEEEEEESSHHH----------HHHHHHTTCSEEEETTSCHHHHHHHHTTTC
T ss_pred CCCCEEEEeC-CChHHHHHHHHHHhhcCcccccccchhHH----------HHHHhhcccceeecCcccHHHHHHHhhCCC
Confidence 3467899987 59999999999988885577777776431 1111112223444333222334444433
Q ss_pred CCCEEEEcCC
Q 047227 83 GAEVVFHMAA 92 (485)
Q Consensus 83 ~~d~Vih~aa 92 (485)
++|+||.+++
T Consensus 100 g~d~vid~~g 109 (172)
T d1h2ba2 100 GVNVAMDFVG 109 (172)
T ss_dssp CEEEEEESSC
T ss_pred CceEEEEecC
Confidence 5999999987
|
| >d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Probab=93.06 E-value=0.065 Score=43.25 Aligned_cols=35 Identities=17% Similarity=0.170 Sum_probs=30.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCc
Q 047227 8 RLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDS 43 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~ 43 (485)
|+|.+.| +|-+|+++++.|++.|.++|.+.+|++.
T Consensus 1 MkI~fIG-~G~MG~ai~~~l~~~~~~~i~v~~r~~~ 35 (152)
T d1yqga2 1 MNVYFLG-GGNMAAAVAGGLVKQGGYRIYIANRGAE 35 (152)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHHCSCEEEEECSSHH
T ss_pred CEEEEEc-CcHHHHHHHHHHHHCCCCcEEEEeCChh
Confidence 6899997 6999999999999988679999988764
|
| >d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Streptococcus pyogenes [TaxId: 1314]
Probab=92.98 E-value=0.016 Score=47.10 Aligned_cols=65 Identities=17% Similarity=0.125 Sum_probs=43.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCCCEE
Q 047227 8 RLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGAEVV 87 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~d~V 87 (485)
|||.+.| +|-+|+++++.|++.| ++|.+.+|...+... +.... ++... .+ ..++++++|+|
T Consensus 1 MkIg~IG-~G~mG~al~~~l~~~~-~~i~v~~r~~~~~~~-------l~~~~---g~~~~----~~---~~~~~~~~dvI 61 (152)
T d2ahra2 1 MKIGIIG-VGKMASAIIKGLKQTP-HELIISGSSLERSKE-------IAEQL---ALPYA----MS---HQDLIDQVDLV 61 (152)
T ss_dssp CEEEEEC-CSHHHHHHHHHHTTSS-CEEEEECSSHHHHHH-------HHHHH---TCCBC----SS---HHHHHHTCSEE
T ss_pred CEEEEEe-ccHHHHHHHHHHHhCC-CeEEEEcChHHhHHh-------hcccc---ceeee----ch---hhhhhhcccee
Confidence 6899997 9999999999999999 599998876542111 11111 22211 22 45667789999
Q ss_pred EEcC
Q 047227 88 FHMA 91 (485)
Q Consensus 88 ih~a 91 (485)
|-+.
T Consensus 62 ilav 65 (152)
T d2ahra2 62 ILGI 65 (152)
T ss_dssp EECS
T ss_pred eeec
Confidence 9664
|
| >d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Escherichia coli [TaxId: 562]
Probab=92.89 E-value=0.098 Score=42.66 Aligned_cols=55 Identities=11% Similarity=0.137 Sum_probs=43.8
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCC
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGA 84 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 84 (485)
..+|+|+|.|.+..+|+.++..|.++| ..|++.+.... .+.+..+.+
T Consensus 35 l~GK~v~VIGrS~~VG~Pla~lL~~~g-atVt~~h~~t~--------------------------------~l~~~~~~A 81 (166)
T d1b0aa1 35 TFGLNAVVIGASNIVGRPMSMELLLAG-CTTTVTHRFTK--------------------------------NLRHHVENA 81 (166)
T ss_dssp CTTCEEEEECCCTTTHHHHHHHHHTTT-CEEEEECSSCS--------------------------------CHHHHHHHC
T ss_pred cccceEEEEeccccccHHHHHHHHHhh-ccccccccccc--------------------------------hhHHHHhhh
Confidence 468999999999999999999999999 68887754321 134455678
Q ss_pred CEEEEcCC
Q 047227 85 EVVFHMAA 92 (485)
Q Consensus 85 d~Vih~aa 92 (485)
|+||..+|
T Consensus 82 DivI~a~G 89 (166)
T d1b0aa1 82 DLLIVAVG 89 (166)
T ss_dssp SEEEECSC
T ss_pred hHhhhhcc
Confidence 99999988
|
| >d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=92.88 E-value=0.11 Score=39.95 Aligned_cols=36 Identities=11% Similarity=-0.042 Sum_probs=31.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCc
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDS 43 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~ 43 (485)
++++|+|.| +|++|-.++..|.+.| .+|+++.+.+.
T Consensus 21 ~~~~vvVvG-gG~ig~E~A~~l~~~g-~~vt~i~~~~~ 56 (121)
T d1mo9a2 21 PGSTVVVVG-GSKTAVEYGCFFNATG-RRTVMLVRTEP 56 (121)
T ss_dssp CCSEEEEEC-CSHHHHHHHHHHHHTT-CEEEEECSSCT
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHhcc-hhheEeeccch
Confidence 468999988 8999999999999999 69999988754
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=92.68 E-value=0.18 Score=41.40 Aligned_cols=77 Identities=13% Similarity=0.138 Sum_probs=46.5
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCH-HHHHHHhc-
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHK-AQVLQALQ- 82 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~-~~l~~~~~- 82 (485)
.++.+|+|.|+ |.+|...+..+...|..+|.+.++++.+. .+.++ + .-.+++..+-.|. +++.++..
T Consensus 27 ~~g~~VlI~G~-G~iG~~~~~~ak~~g~~~v~~~~~~~~k~-------~~a~~-~--Ga~~~i~~~~~~~~~~i~~~t~g 95 (174)
T d1f8fa2 27 TPASSFVTWGA-GAVGLSALLAAKVCGASIIIAVDIVESRL-------ELAKQ-L--GATHVINSKTQDPVAAIKEITDG 95 (174)
T ss_dssp CTTCEEEEESC-SHHHHHHHHHHHHHTCSEEEEEESCHHHH-------HHHHH-H--TCSEEEETTTSCHHHHHHHHTTS
T ss_pred CCCCEEEEeCC-CHHHhhhhhcccccccceeeeeccHHHHH-------HHHHH-c--CCeEEEeCCCcCHHHHHHHHcCC
Confidence 45679999986 99999999999888855666766654311 01111 1 1123333332232 23333333
Q ss_pred CCCEEEEcCC
Q 047227 83 GAEVVFHMAA 92 (485)
Q Consensus 83 ~~d~Vih~aa 92 (485)
++|+||.+.+
T Consensus 96 g~D~vid~~G 105 (174)
T d1f8fa2 96 GVNFALESTG 105 (174)
T ss_dssp CEEEEEECSC
T ss_pred CCcEEEEcCC
Confidence 4999999987
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=92.62 E-value=0.24 Score=40.76 Aligned_cols=73 Identities=11% Similarity=0.079 Sum_probs=49.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCCCEE
Q 047227 8 RLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGAEVV 87 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~d~V 87 (485)
.+|-|.| .|.+|+.+++.|+++| +.|.+.||.+...... ..... ...... .....+.+.+.+..+|.+
T Consensus 3 ~nIg~IG-lG~MG~~mA~~L~~~G-~~V~v~dr~~~~~~~l------~~~~~---~~~~~~-~a~~~~~~~~~~~~~~~i 70 (176)
T d2pgda2 3 ADIALIG-LAVMGQNLILNMNDHG-FVVCAFNRTVSKVDDF------LANEA---KGTKVL-GAHSLEEMVSKLKKPRRI 70 (176)
T ss_dssp BSEEEEC-CSHHHHHHHHHHHHTT-CCEEEECSSTHHHHHH------HHTTT---TTSSCE-ECSSHHHHHHHBCSSCEE
T ss_pred CcEEEEe-EhHHHHHHHHHHHHCC-CeEEEEcCCHHHHHHH------HHhcc---cccccc-chhhhhhhhhhhcccceE
Confidence 4688888 8999999999999999 5999999986532110 01000 000111 134567788888999998
Q ss_pred EEcCC
Q 047227 88 FHMAA 92 (485)
Q Consensus 88 ih~aa 92 (485)
+-+..
T Consensus 71 i~~~~ 75 (176)
T d2pgda2 71 ILLVK 75 (176)
T ss_dssp EECSC
T ss_pred EEecC
Confidence 87653
|
| >d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.60 E-value=0.17 Score=41.37 Aligned_cols=55 Identities=11% Similarity=0.204 Sum_probs=44.0
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCC
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGA 84 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 84 (485)
..+++|+|.|-+..+|+.++..|.++| ..|++.+.... .+.+..+++
T Consensus 37 l~Gk~vvVIGrS~iVGrPLa~lL~~~g-atVt~~~~~t~--------------------------------~l~~~~~~a 83 (170)
T d1a4ia1 37 IAGRHAVVVGRSKIVGAPMHDLLLWNN-ATVTTCHSKTA--------------------------------HLDEEVNKG 83 (170)
T ss_dssp CTTCEEEEECCCTTTHHHHHHHHHHTT-CEEEEECTTCS--------------------------------SHHHHHTTC
T ss_pred cccceEEEEecCCccchHHHHHHHhcc-CceEEEecccc--------------------------------cHHHHHhhc
Confidence 468999999999999999999999999 68887755322 134556678
Q ss_pred CEEEEcCC
Q 047227 85 EVVFHMAA 92 (485)
Q Consensus 85 d~Vih~aa 92 (485)
|+||..++
T Consensus 84 Divi~a~G 91 (170)
T d1a4ia1 84 DILVVATG 91 (170)
T ss_dssp SEEEECCC
T ss_pred cchhhccc
Confidence 88888887
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=92.59 E-value=0.068 Score=44.09 Aligned_cols=38 Identities=16% Similarity=0.100 Sum_probs=29.7
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCc
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDS 43 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~ 43 (485)
.++.+|||.|+ |-+|...++.+...|..+|.++++++.
T Consensus 27 ~~G~tVlI~Ga-GGvG~~aiq~ak~~G~~~vi~~~~~~~ 64 (176)
T d2fzwa2 27 EPGSVCAVFGL-GGVGLAVIMGCKVAGASRIIGVDINKD 64 (176)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSCGG
T ss_pred CCCCEEEEecc-hhHHHHHHHHHHHHhcCceEEEcccHH
Confidence 45679999987 568999999999999557777766543
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=92.57 E-value=0.1 Score=43.18 Aligned_cols=76 Identities=13% Similarity=0.052 Sum_probs=47.7
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEE-EEecCCC--HHHHHHHh
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHY-VSFDLRH--KAQVLQAL 81 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~Dl~d--~~~l~~~~ 81 (485)
.++.+|+|+| .|-+|...+..+...|...|++.++.+.+.. +.. .-+... +...-.| .....+..
T Consensus 27 ~~G~~VlV~G-~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~--------~a~---~~Ga~~~i~~~~~~~~~~~~~~~~ 94 (174)
T d1e3ia2 27 TPGSTCAVFG-LGCVGLSAIIGCKIAGASRIIAIDINGEKFP--------KAK---ALGATDCLNPRELDKPVQDVITEL 94 (174)
T ss_dssp CTTCEEEEEC-CSHHHHHHHHHHHHTTCSEEEEECSCGGGHH--------HHH---HTTCSEEECGGGCSSCHHHHHHHH
T ss_pred CCCCEEEEEC-CChHHHHHHHHHHHhCCceeeeeccchHHHH--------HHH---HhCCCcccCCccchhhhhhhHhhh
Confidence 4568999997 6999999999999999657888877654210 111 122322 2221122 23333333
Q ss_pred --cCCCEEEEcCC
Q 047227 82 --QGAEVVFHMAA 92 (485)
Q Consensus 82 --~~~d~Vih~aa 92 (485)
.++|+||.+++
T Consensus 95 ~~~G~d~vie~~G 107 (174)
T d1e3ia2 95 TAGGVDYSLDCAG 107 (174)
T ss_dssp HTSCBSEEEESSC
T ss_pred hcCCCcEEEEecc
Confidence 36999999987
|
| >d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=92.32 E-value=0.2 Score=38.65 Aligned_cols=79 Identities=10% Similarity=0.133 Sum_probs=54.8
Q ss_pred CCCCCCCCEEEEEcCC----------CchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEec
Q 047227 1 MSGEENERLCVVTGGR----------GFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFD 70 (485)
Q Consensus 1 M~~~~~~~~iLVtGgt----------G~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D 70 (485)
|+...+.++|||.|+. -|-+.+.++.|.+.| +++.+++..+....... .-..-+...
T Consensus 1 mp~~~~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g-~~~iliN~NP~TVstd~------------d~aD~lYfe 67 (127)
T d1a9xa3 1 MPKRTDIKSILILGAGPIVIGQACEFDYSGAQACKALREEG-YRVINVNSNPATIMTDP------------EMADATYIE 67 (127)
T ss_dssp CCCCSSCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHT-CEEEEECSCTTCGGGCG------------GGSSEEECS
T ss_pred CCCCCCCCEEEEECCCcCcccccchhHHHHHHHHHHHHHcC-CeEEEecCchHhhhcCh------------hhcceeeee
Confidence 7766777999999973 467899999999999 68888877655321110 112234445
Q ss_pred CCCHHHHHHHhc--CCCEEEEcCC
Q 047227 71 LRHKAQVLQALQ--GAEVVFHMAA 92 (485)
Q Consensus 71 l~d~~~l~~~~~--~~d~Vih~aa 92 (485)
-...+.+.++++ ++|.|+-..|
T Consensus 68 Plt~e~v~~Ii~~E~pd~il~~~G 91 (127)
T d1a9xa3 68 PIHWEVVRKIIEKERPDAVLPTMG 91 (127)
T ss_dssp CCCHHHHHHHHHHHCCSEEECSSS
T ss_pred cCCHHHHHHHHHHhCcCCeEEEee
Confidence 567788888885 6999985444
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=92.25 E-value=0.065 Score=43.81 Aligned_cols=77 Identities=16% Similarity=0.207 Sum_probs=56.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCCC
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGAE 85 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~d 85 (485)
++-+|+|.| .|-.|..-++.+...| ..|+++|.+..... + ++... ...++.. ..+++.+.+.++++|
T Consensus 31 ~pa~V~ViG-aGvaG~~A~~~A~~lG-A~V~~~D~~~~~l~----~---l~~~~-~~~~~~~---~~~~~~l~~~~~~aD 97 (168)
T d1pjca1 31 KPGKVVILG-GGVVGTEAAKMAVGLG-AQVQIFDINVERLS----Y---LETLF-GSRVELL---YSNSAEIETAVAEAD 97 (168)
T ss_dssp CCCEEEEEC-CSHHHHHHHHHHHHTT-CEEEEEESCHHHHH----H---HHHHH-GGGSEEE---ECCHHHHHHHHHTCS
T ss_pred CCcEEEEEC-CChHHHHHHHHHhhCC-CEEEEEeCcHHHHH----H---HHHhh-cccceee---hhhhhhHHHhhccCc
Confidence 356999998 8999999999999999 69999998754211 1 22222 2234433 356788999999999
Q ss_pred EEEEcCCCCC
Q 047227 86 VVFHMAAPNS 95 (485)
Q Consensus 86 ~Vih~aa~~~ 95 (485)
+||-.+-...
T Consensus 98 ivI~aalipG 107 (168)
T d1pjca1 98 LLIGAVLVPG 107 (168)
T ss_dssp EEEECCCCTT
T ss_pred EEEEeeecCC
Confidence 9998887444
|
| >d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=92.02 E-value=0.35 Score=40.26 Aligned_cols=37 Identities=14% Similarity=0.152 Sum_probs=31.6
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCc
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDS 43 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~ 43 (485)
..+++|.|.| .|.||+.+++.|..-| .+|...++...
T Consensus 42 l~~~~vgiiG-~G~IG~~va~~l~~fg-~~v~~~d~~~~ 78 (188)
T d1sc6a1 42 ARGKKLGIIG-YGHIGTQLGILAESLG-MYVYFYDIENK 78 (188)
T ss_dssp STTCEEEEEC-CSHHHHHHHHHHHHTT-CEEEEECSSCC
T ss_pred ccceEEEEee-cccchhhhhhhccccc-ceEeecccccc
Confidence 3578999996 9999999999999999 69999987543
|
| >d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.82 E-value=0.28 Score=40.14 Aligned_cols=80 Identities=16% Similarity=0.157 Sum_probs=52.4
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecC--CCHHHHHHHh
Q 047227 4 EENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDL--RHKAQVLQAL 81 (485)
Q Consensus 4 ~~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl--~d~~~l~~~~ 81 (485)
...+|+++|.|-+.-+|+.++..|+++| ..|+..+............ . .-......|+ ..++.+.+..
T Consensus 26 ~l~GK~vvVIGrS~iVG~Pla~lL~~~g-aTVt~~~~~~~~~~~~~~~-------~--~~~~~~~~~~~~~~~~~lk~~~ 95 (171)
T d1edza1 26 RLYGKKCIVINRSEIVGRPLAALLANDG-ATVYSVDVNNIQKFTRGES-------L--KLNKHHVEDLGEYSEDLLKKCS 95 (171)
T ss_dssp TTTTCEEEEECCCTTTHHHHHHHHHTTS-CEEEEECSSEEEEEESCCC-------S--SCCCCEEEEEEECCHHHHHHHH
T ss_pred CCCCCEEEEECCccccHHHHHHHHHHCC-CEEEEeccccccccccccc-------e--eeeeeccccccccchhHHhhcc
Confidence 3568999999999999999999999999 6888776543211100000 0 0001111222 3456688888
Q ss_pred cCCCEEEEcCCC
Q 047227 82 QGAEVVFHMAAP 93 (485)
Q Consensus 82 ~~~d~Vih~aa~ 93 (485)
..+|+||..+|.
T Consensus 96 ~~aDIvIsavG~ 107 (171)
T d1edza1 96 LDSDVVITGVPS 107 (171)
T ss_dssp HHCSEEEECCCC
T ss_pred ccCCEEEEccCC
Confidence 889999988873
|
| >d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PH1109 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=91.78 E-value=0.14 Score=40.51 Aligned_cols=85 Identities=13% Similarity=0.053 Sum_probs=55.5
Q ss_pred CCEEEEEcCC---CchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcC
Q 047227 7 ERLCVVTGGR---GFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQG 83 (485)
Q Consensus 7 ~~~iLVtGgt---G~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~ 83 (485)
.++|.|.|++ +-.|..+.+.|.+.| ++|+.++...... .+... .-+ +.++-+.
T Consensus 19 ~ksIAVVGaS~~~~~~g~~v~~~L~~~g-~~v~pVnP~~~~i----------------~G~~~-~~s------l~dlp~~ 74 (139)
T d2d59a1 19 YKKIALVGASPKPERDANIVMKYLLEHG-YDVYPVNPKYEEV----------------LGRKC-YPS------VLDIPDK 74 (139)
T ss_dssp CCEEEEETCCSCTTSHHHHHHHHHHHTT-CEEEEECTTCSEE----------------TTEEC-BSS------GGGCSSC
T ss_pred CCeEEEEeecCCCCCchHHHHHHHHHCC-CEEEEECCccccc----------------CCCcc-ccc------ccccCcc
Confidence 5789999988 899999999999999 5888876432200 11111 112 2333345
Q ss_pred CCEEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEec
Q 047227 84 AEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTS 130 (485)
Q Consensus 84 ~d~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~S 130 (485)
+|.|+-+.. ......+++.|.+.|++.+++.+
T Consensus 75 iD~v~i~vp---------------~~~~~~~~~e~~~~g~k~v~~~~ 106 (139)
T d2d59a1 75 IEVVDLFVK---------------PKLTMEYVEQAIKKGAKVVWFQY 106 (139)
T ss_dssp CSEEEECSC---------------HHHHHHHHHHHHHHTCSEEEECT
T ss_pred ceEEEEEeC---------------HHHHHHHHHHHHHhCCCEEEEec
Confidence 788775542 23445788888888988766544
|
| >d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.76 E-value=0.085 Score=42.40 Aligned_cols=34 Identities=12% Similarity=0.182 Sum_probs=30.3
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeec
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADL 40 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r 40 (485)
.++|+|||+|| |.+|..-++.|++.| .+|+++..
T Consensus 11 l~gkrvLViGg-G~va~~ka~~Ll~~G-A~VtVvap 44 (150)
T d1kyqa1 11 LKDKRILLIGG-GEVGLTRLYKLMPTG-CKLTLVSP 44 (150)
T ss_dssp CTTCEEEEEEE-SHHHHHHHHHHGGGT-CEEEEEEE
T ss_pred eCCCEEEEECC-CHHHHHHHHHHHHCC-CEEEEEeC
Confidence 46899999996 899999999999999 68998854
|
| >d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: UBA3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.35 E-value=0.28 Score=46.57 Aligned_cols=82 Identities=11% Similarity=0.020 Sum_probs=50.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccC-------Cccchhh-----hhhhhc--CC--CeEEEEec
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALE-------PHEEQGI-----LGEALR--SG--RAHYVSFD 70 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~-------~~~~~~~-----~~~~~~--~~--~v~~~~~D 70 (485)
++||||.|+ |-+|+++++.|...|--+++++|...-...+ ....-+. ....+. .+ ++..+..+
T Consensus 37 ~~kVlvvG~-GglG~ei~k~L~~~Gvg~i~lvD~D~Ve~sNL~RQflf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~ 115 (426)
T d1yovb1 37 TCKVLVIGA-GGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHFNK 115 (426)
T ss_dssp HCCEEEECS-STTHHHHHHHHHTTTCCCEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHSTTCCCEEECSC
T ss_pred cCeEEEECC-CHHHHHHHHHHHHcCCCeEEEEECCCcchhhhcccccCChhHcCcHHHHHHHHHHHhhCCCCceEeeecc
Confidence 468999995 5699999999999996689999876321111 1110000 011110 23 44555555
Q ss_pred CCCHHHHHHHhcCCCEEEEcC
Q 047227 71 LRHKAQVLQALQGAEVVFHMA 91 (485)
Q Consensus 71 l~d~~~l~~~~~~~d~Vih~a 91 (485)
+.+.. .+.++++|+||.+.
T Consensus 116 i~~~~--~~~~~~~DlVi~~~ 134 (426)
T d1yovb1 116 IQDFN--DTFYRQFHIIVCGL 134 (426)
T ss_dssp GGGBC--HHHHTTCSEEEECC
T ss_pred ccchH--HHHHHhcchheecc
Confidence 55432 45788999999765
|
| >d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PF0725 species: Pyrococcus furiosus [TaxId: 2261]
Probab=91.31 E-value=0.19 Score=38.35 Aligned_cols=83 Identities=13% Similarity=0.121 Sum_probs=53.0
Q ss_pred CEEEEEcCC---CchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCC
Q 047227 8 RLCVVTGGR---GFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGA 84 (485)
Q Consensus 8 ~~iLVtGgt---G~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 84 (485)
|+|.|.|++ |-.|..+.+.|++.| ++|..++.....- .+...+ -+ +.++=+.+
T Consensus 2 KsIAVvGaS~~~~k~g~~v~~~L~~~g-~~V~pVnP~~~~i----------------~G~~~y-~s------l~~lp~~~ 57 (116)
T d1y81a1 2 RKIALVGASKNPAKYGNIILKDLLSKG-FEVLPVNPNYDEI----------------EGLKCY-RS------VRELPKDV 57 (116)
T ss_dssp CEEEEETCCSCTTSHHHHHHHHHHHTT-CEEEEECTTCSEE----------------TTEECB-SS------GGGSCTTC
T ss_pred cEEEEEcccCCCCCcHHHHHHHHHHCC-CEEEEEccccccc----------------cCcccc-cc------chhccccc
Confidence 679999988 889999999999999 5888775432100 111111 11 22233457
Q ss_pred CEEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEe
Q 047227 85 EVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYT 129 (485)
Q Consensus 85 d~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~ 129 (485)
|.++-+.. ...+..+++.|.+.|++.+++-
T Consensus 58 D~vvi~vp---------------~~~~~~~l~~~~~~g~k~v~~~ 87 (116)
T d1y81a1 58 DVIVFVVP---------------PKVGLQVAKEAVEAGFKKLWFQ 87 (116)
T ss_dssp CEEEECSC---------------HHHHHHHHHHHHHTTCCEEEEC
T ss_pred eEEEEEeC---------------HHHHHHHHHHHHhcCCceEEec
Confidence 88775542 2334567888888898876543
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=91.30 E-value=0.17 Score=41.48 Aligned_cols=37 Identities=24% Similarity=0.263 Sum_probs=31.8
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCc
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDS 43 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~ 43 (485)
.++++|||.| +|-.+++++..|.+.| .+|++++|...
T Consensus 16 ~~~k~vlIlG-aGGaarai~~al~~~g-~~i~I~nRt~~ 52 (170)
T d1nyta1 16 RPGLRILLIG-AGGASRGVLLPLLSLD-CAVTITNRTVS 52 (170)
T ss_dssp CTTCEEEEEC-CSHHHHHHHHHHHHTT-CEEEEECSSHH
T ss_pred CCCCEEEEEC-CcHHHHHHHHHhcccc-eEEEeccchHH
Confidence 4578999999 5788999999999999 58999988754
|
| >d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-2-hydroxyisocaproate dehydrogenase species: Lactobacillus casei [TaxId: 1582]
Probab=91.21 E-value=0.35 Score=40.69 Aligned_cols=37 Identities=14% Similarity=0.140 Sum_probs=31.8
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCc
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDS 43 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~ 43 (485)
..+++|.|.| .|-||+.+++.|..-| .+|.++++...
T Consensus 43 l~~ktvgIiG-~G~IG~~va~~l~~fg-~~v~~~d~~~~ 79 (199)
T d1dxya1 43 LGQQTVGVMG-TGHIGQVAIKLFKGFG-AKVIAYDPYPM 79 (199)
T ss_dssp GGGSEEEEEC-CSHHHHHHHHHHHHTT-CEEEEECSSCC
T ss_pred ccceeeeeee-cccccccccccccccc-eeeeccCCccc
Confidence 3468999998 9999999999999999 69999987543
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=91.10 E-value=0.52 Score=38.51 Aligned_cols=76 Identities=12% Similarity=-0.055 Sum_probs=48.3
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEE-ecCCC--HHHHHHHh
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVS-FDLRH--KAQVLQAL 81 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~Dl~d--~~~l~~~~ 81 (485)
.++.+|+|.| .|-+|...++.+...|..+|.++++...+ ++.. +.-+.+.+. ..-.| .++..+..
T Consensus 26 ~~G~~VlV~G-aGgvGl~a~~~ak~~G~~~Vi~~d~~~~k----------l~~a-~~lGa~~~i~~~~~d~~~~~~~~~~ 93 (174)
T d1p0fa2 26 TPGSTCAVFG-LGGVGFSAIVGCKAAGASRIIGVGTHKDK----------FPKA-IELGATECLNPKDYDKPIYEVICEK 93 (174)
T ss_dssp CTTCEEEEEC-CSHHHHHHHHHHHHHTCSEEEEECSCGGG----------HHHH-HHTTCSEEECGGGCSSCHHHHHHHH
T ss_pred CCCCEEEEEC-CCchhHHHHHHHHHcCCceeeccCChHHH----------HHHH-HHcCCcEEEcCCCchhHHHHHHHHh
Confidence 4567999998 59999999999999996688888876542 1111 112333332 21122 23333333
Q ss_pred --cCCCEEEEcCC
Q 047227 82 --QGAEVVFHMAA 92 (485)
Q Consensus 82 --~~~d~Vih~aa 92 (485)
.++|+||.+.+
T Consensus 94 ~~~G~d~vid~~g 106 (174)
T d1p0fa2 94 TNGGVDYAVECAG 106 (174)
T ss_dssp TTSCBSEEEECSC
T ss_pred cCCCCcEEEEcCC
Confidence 35999999886
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Probab=90.96 E-value=0.14 Score=44.51 Aligned_cols=33 Identities=27% Similarity=0.285 Sum_probs=29.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCC
Q 047227 8 RLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSD 42 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~ 42 (485)
+||+|+| +|..|-..+..|.++| ++|+++++..
T Consensus 7 ~kVvVIG-aGiaGl~~A~~L~~~G-~~V~vier~~ 39 (268)
T d1c0pa1 7 KRVVVLG-SGVIGLSSALILARKG-YSVHILARDL 39 (268)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHTT-CEEEEEESSC
T ss_pred CcEEEEC-ccHHHHHHHHHHHHCC-CCEEEEeCCC
Confidence 6899998 8999999999999999 5999999853
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.89 E-value=0.12 Score=43.52 Aligned_cols=35 Identities=14% Similarity=0.278 Sum_probs=31.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCc
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDS 43 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~ 43 (485)
-++|.|.| +|.+|+.++..+...| +.|+++|+++.
T Consensus 4 IkkvaViG-aG~mG~~iA~~~a~~G-~~V~l~D~~~~ 38 (192)
T d1f0ya2 4 VKHVTVIG-GGLMGAGIAQVAAATG-HTVVLVDQTED 38 (192)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHHHTT-CEEEEECSCHH
T ss_pred eEEEEEEC-cCHHHHHHHHHHHhCC-CcEEEEECChH
Confidence 46999999 5999999999999999 69999998864
|
| >d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain species: Escherichia coli [TaxId: 562]
Probab=90.79 E-value=0.17 Score=35.59 Aligned_cols=35 Identities=20% Similarity=0.153 Sum_probs=30.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCc
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDS 43 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~ 43 (485)
+|+|.|.| +|.+|+-++....+.| .+|.+++..+.
T Consensus 1 ~k~vgIlG-~GQLgrMl~~Aa~~LG-~~v~vldp~~~ 35 (78)
T d3etja2 1 MKQVCVLG-NGQLGRMLRQAGEPLG-IAVWPVGLDAE 35 (78)
T ss_dssp CEEEEEEB-CSHHHHHHHHHHGGGT-EEEEEECTTSC
T ss_pred CCEEEEEc-CCHHHHHHHHHHHHcC-CEEEEEcCCCC
Confidence 37899998 8999999999999999 69999986543
|
| >d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=90.42 E-value=0.14 Score=41.18 Aligned_cols=34 Identities=21% Similarity=0.018 Sum_probs=29.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCc
Q 047227 8 RLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDS 43 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~ 43 (485)
|||-|.| .|.+|+.+++.|.++| ++|.+.++.++
T Consensus 1 MkIgiIG-~G~mG~~ia~~l~~~g-~~v~~~~~~~~ 34 (152)
T d1i36a2 1 LRVGFIG-FGEVAQTLASRLRSRG-VEVVTSLEGRS 34 (152)
T ss_dssp CEEEEES-CSHHHHHHHHHHHHTT-CEEEECCTTCC
T ss_pred CEEEEEc-HHHHHHHHHHHHHHCC-CeEEEEcCchh
Confidence 6899996 8999999999999999 58888877654
|
| >d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=90.41 E-value=0.084 Score=43.74 Aligned_cols=34 Identities=21% Similarity=0.169 Sum_probs=30.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCc
Q 047227 8 RLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDS 43 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~ 43 (485)
|+|-|.| .|..|..+++.|+++| ++|.+.||.+.
T Consensus 2 MkIGvIG-lG~MG~~ma~~L~~~G-~~V~~~dr~~~ 35 (178)
T d1pgja2 2 MDVGVVG-LGVMGANLALNIAEKG-FKVAVFNRTYS 35 (178)
T ss_dssp BSEEEEC-CSHHHHHHHHHHHHTT-CCEEEECSSHH
T ss_pred CEEEEEe-ehHHHHHHHHHHHHCC-CeEEEEECCHH
Confidence 7898987 9999999999999999 69999998765
|
| >d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Haemophilus influenzae [TaxId: 727]
Probab=90.26 E-value=0.33 Score=39.72 Aligned_cols=72 Identities=22% Similarity=0.283 Sum_probs=46.3
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhc-CCCeEEEEecCCCHHHHHHHhcC
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALR-SGRAHYVSFDLRHKAQVLQALQG 83 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~Dl~d~~~l~~~~~~ 83 (485)
.++++|+|.| +|-.|+.++..|.+.+ .+|++++|...+... +...+. ...+..+.-|-. .+..
T Consensus 16 ~~~k~vlIlG-aGGaarai~~aL~~~~-~~i~I~nR~~~~a~~-------l~~~~~~~~~~~~~~~~~~-------~~~~ 79 (171)
T d1p77a1 16 RPNQHVLILG-AGGATKGVLLPLLQAQ-QNIVLANRTFSKTKE-------LAERFQPYGNIQAVSMDSI-------PLQT 79 (171)
T ss_dssp CTTCEEEEEC-CSHHHHTTHHHHHHTT-CEEEEEESSHHHHHH-------HHHHHGGGSCEEEEEGGGC-------CCSC
T ss_pred CCCCEEEEEC-CcHHHHHHHHHHcccC-ceeeeccchHHHHHH-------HHHHHhhccccchhhhccc-------cccc
Confidence 3578999998 6778999999999866 699999998642211 111111 223444443321 1356
Q ss_pred CCEEEEcCC
Q 047227 84 AEVVFHMAA 92 (485)
Q Consensus 84 ~d~Vih~aa 92 (485)
+|.||++..
T Consensus 80 ~diiIN~tp 88 (171)
T d1p77a1 80 YDLVINATS 88 (171)
T ss_dssp CSEEEECCC
T ss_pred cceeeeccc
Confidence 899998876
|
| >d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Alpha-glucosidase AglA species: Thermotoga maritima [TaxId: 2336]
Probab=89.98 E-value=0.6 Score=38.10 Aligned_cols=113 Identities=12% Similarity=0.059 Sum_probs=62.7
Q ss_pred CCEEEEEcCCCchHHHH--HHHHHhcC---CceEEEeecCCccccCCccchhhhhhhh--cCCCeEEEEecCCCHHHHHH
Q 047227 7 ERLCVVTGGRGFAARHL--VEMLIRYD---MFSVRIADLSDSIALEPHEEQGILGEAL--RSGRAHYVSFDLRHKAQVLQ 79 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l--~~~Ll~~G---~~~V~~~~r~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~Dl~d~~~l~~ 79 (485)
.|||.|.|| |.+|..+ +..|+... ..++.++|........... ...+.. .....++... +| ..+
T Consensus 2 ~mKI~iIGa-Gsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~~~~---~~~~~~~~~~~~~~i~~~--td---~~e 72 (171)
T d1obba1 2 SVKIGIIGA-GSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILT---IAKKYVEEVGADLKFEKT--MN---LDD 72 (171)
T ss_dssp CCEEEEETT-TCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHH---HHHHHHHHTTCCCEEEEE--SC---HHH
T ss_pred CcEEEEECC-CHHHhHHHHHHHHHhccccCCCEEEEEeCCchHHHHHHH---HHHHHHHhcCCCeEEEEe--CC---hhh
Confidence 489999995 8888653 34444321 1489999987542211000 011111 1233444333 23 566
Q ss_pred HhcCCCEEEEcCCCCCCCC---------------------------chhhhHHHHHHHHHHHHHHHHhcCCCEEEE
Q 047227 80 ALQGAEVVFHMAAPNSSIN---------------------------NHKLHHSVNVEGTKNVIDACAELKVKRLIY 128 (485)
Q Consensus 80 ~~~~~d~Vih~aa~~~~~~---------------------------~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~ 128 (485)
+++++|+|+..++...... +......-|+.-.+.+++.+++...+-++.
T Consensus 73 aL~dad~Vv~~~~~g~~~~~~~~~~i~~~~g~~~~~~~~~~~~~g~~~~~~~~rn~~i~~~i~~~i~~~~p~a~~i 148 (171)
T d1obba1 73 VIIDADFVINTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDYYTFSNYNQLKYFVDIARKIEKLSPKAWYL 148 (171)
T ss_dssp HHTTCSEEEECCCTTHHHHHHHHHHHHHHTTCTTCTTCBTTBCCTTCCSSSCHHHHHHHHHHHHHHHHHCTTCEEE
T ss_pred cccCCCeEeeecccccccceeeehhcchhhhhccCCCccccCCCCCcceeeecchHHHHHHHHHHHHHHCcCeEEE
Confidence 8899999999887322110 000012347788888888888887554443
|
| >d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-lactate dehydrogenase species: Lactobacillus helveticus [TaxId: 1587]
Probab=89.86 E-value=0.096 Score=44.30 Aligned_cols=36 Identities=14% Similarity=0.271 Sum_probs=31.4
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCC
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSD 42 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~ 42 (485)
..+++|.|.| .|-||+.+++.|..-| .+|.++++..
T Consensus 41 l~gk~vgIiG-~G~IG~~va~~l~~fg-~~V~~~d~~~ 76 (197)
T d1j4aa1 41 VRDQVVGVVG-TGHIGQVFMQIMEGFG-AKVITYDIFR 76 (197)
T ss_dssp GGGSEEEEEC-CSHHHHHHHHHHHHTT-CEEEEECSSC
T ss_pred ccCCeEEEec-ccccchhHHHhHhhhc-ccccccCccc
Confidence 3578999998 9999999999999999 6999988654
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=89.85 E-value=0.48 Score=38.20 Aligned_cols=75 Identities=16% Similarity=0.119 Sum_probs=46.6
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCC-C-HHHHHHHhc
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLR-H-KAQVLQALQ 82 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~-d-~~~l~~~~~ 82 (485)
.++.+|||.| +|-+|...+..+...| .+|.++++++.+ .+..+.-+++.+..... | .+.+.+..+
T Consensus 26 ~~g~~vlv~G-~G~iG~~a~~~a~~~g-~~v~~~~~~~~r-----------~~~~k~~Ga~~~~~~~~~~~~~~~~~~~~ 92 (168)
T d1rjwa2 26 KPGEWVAIYG-IGGLGHVAVQYAKAMG-LNVVAVDIGDEK-----------LELAKELGADLVVNPLKEDAAKFMKEKVG 92 (168)
T ss_dssp CTTCEEEEEC-CSTTHHHHHHHHHHTT-CEEEEECSCHHH-----------HHHHHHTTCSEEECTTTSCHHHHHHHHHS
T ss_pred CCCCEEEEee-cccchhhhhHHHhcCC-CeEeccCCCHHH-----------hhhhhhcCcceecccccchhhhhcccccC
Confidence 3567899986 5999999999999999 588888776542 11122234444433222 2 234555556
Q ss_pred CCCEEEEcCC
Q 047227 83 GAEVVFHMAA 92 (485)
Q Consensus 83 ~~d~Vih~aa 92 (485)
+.+.+|..++
T Consensus 93 ~~~~~v~~~~ 102 (168)
T d1rjwa2 93 GVHAAVVTAV 102 (168)
T ss_dssp SEEEEEESSC
T ss_pred CCceEEeecC
Confidence 7666665554
|
| >d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=89.72 E-value=0.91 Score=37.00 Aligned_cols=98 Identities=7% Similarity=0.006 Sum_probs=55.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCceEEEe-ecCCccccCCccchhhhhhhhcCCCeEEEEecCCCH-----------H
Q 047227 8 RLCVVTGGRGFAARHLVEMLIRYDMFSVRIA-DLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHK-----------A 75 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~-----------~ 75 (485)
+||.|-| -|-||+.+++.|.++...+|..+ +..+. . ....+...+...+..+-... .
T Consensus 3 irIaING-fGRIGR~v~Ral~~~~dieiVaINd~~~~------~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (172)
T d2czca2 3 VKVGVNG-YGTIGKRVAYAVTKQDDMELIGITKTKPD------F----EAYRAKELGIPVYAASEEFIPRFEKEGFEVAG 71 (172)
T ss_dssp EEEEEEC-CSHHHHHHHHHHHTCTTEEEEEEEESSCS------H----HHHHHHHTTCCEEESSGGGHHHHHHHTCCCSC
T ss_pred EEEEEEC-CCHHHHHHHHHHHhCCCceEEEEecCCCh------H----HHHHhhhcCceeecccccceeeecccCccccc
Confidence 7999998 79999999999998764455544 33221 1 11111112223333322211 1
Q ss_pred HHHHHhcCCCEEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCc
Q 047227 76 QVLQALQGAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSP 132 (485)
Q Consensus 76 ~l~~~~~~~d~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~ 132 (485)
.+..+++++|+|+.+.|.... ..-++...+.|+ +.|++|++
T Consensus 72 ~~~~~~~~vDvViEcTG~f~~---------------~~~~~~hl~~G~-k~Vi~s~~ 112 (172)
T d2czca2 72 TLNDLLEKVDIIVDATPGGIG---------------AKNKPLYEKAGV-KAIFQGGE 112 (172)
T ss_dssp BHHHHHTTCSEEEECCSTTHH---------------HHHHHHHHHHTC-EEEECTTS
T ss_pred hhhhhhccCCEEEECCCCCCC---------------HHHHHHHHHcCC-CEEEECCC
Confidence 344556789999999983321 123344556787 56666654
|
| >d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=89.64 E-value=0.53 Score=38.70 Aligned_cols=31 Identities=13% Similarity=0.174 Sum_probs=25.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCceEEEee
Q 047227 8 RLCVVTGGRGFAARHLVEMLIRYDMFSVRIAD 39 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~ 39 (485)
-||.|-| .|.||+.+++.|.+++..+|..+.
T Consensus 2 IKVaING-fGRIGR~v~Ral~~~~dievVaIn 32 (178)
T d1b7go1 2 VNVAVNG-YGTIGKRVADAIIKQPDMKLVGVA 32 (178)
T ss_dssp EEEEEEC-CSHHHHHHHHHHHTCTTEEEEEEE
T ss_pred eEEEEEC-CCHHHHHHHHHHHhCCCCEEEEEE
Confidence 5899998 899999999999998755666654
|
| >d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=89.48 E-value=0.14 Score=42.02 Aligned_cols=36 Identities=22% Similarity=0.225 Sum_probs=31.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCc
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDS 43 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~ 43 (485)
+.+|||+||+|-+|...++.....| .+|+.+.+++.
T Consensus 24 ~~~VLV~gaaGgVG~~avQlAk~~G-a~Viat~~s~~ 59 (167)
T d1tt7a2 24 KGSVLVTGATGGVGGIAVSMLNKRG-YDVVASTGNRE 59 (167)
T ss_dssp GCCEEEESTTSHHHHHHHHHHHHHT-CCEEEEESSSS
T ss_pred CCEEEEeCCcchHHHHHHHHHHHcC-CceEEEecCHH
Confidence 4579999999999999999999999 68888887654
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=89.28 E-value=0.16 Score=42.25 Aligned_cols=36 Identities=17% Similarity=0.176 Sum_probs=31.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCc
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDS 43 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~ 43 (485)
++||+|.| +|..|-..+.+|.++|+..|+++.+.+.
T Consensus 4 ~~kVaIIG-aGpaGl~aA~~l~~~G~~~V~v~E~~~~ 39 (196)
T d1gtea4 4 SAKIALLG-AGPASISCASFLARLGYSDITIFEKQEY 39 (196)
T ss_dssp GCCEEEEC-CSHHHHHHHHHHHHTTCCCEEEEESSSS
T ss_pred CCEEEEEC-ChHHHHHHHHHHHHCCCCeEEEEEecCc
Confidence 57999998 8999999999999999646999988654
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=89.28 E-value=0.82 Score=36.73 Aligned_cols=37 Identities=16% Similarity=0.198 Sum_probs=30.9
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCc
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDS 43 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~ 43 (485)
.++.+|+|.|+ |-+|...+..+...| .+|.++++.+.
T Consensus 26 ~~g~~VlV~Ga-G~vG~~~~~~ak~~G-~~Vi~~~~~~~ 62 (166)
T d1llua2 26 RPGQWVAISGI-GGLGHVAVQYARAMG-LHVAAIDIDDA 62 (166)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTT-CEEEEEESCHH
T ss_pred CCCCEEEEeec-cccHHHHHHHHHHcC-Cccceecchhh
Confidence 45679999875 999999999998899 68999987654
|
| >d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Maltose-6'-phosphate glucosidase GlvA species: Bacillus subtilis [TaxId: 1423]
Probab=89.12 E-value=0.71 Score=37.49 Aligned_cols=79 Identities=13% Similarity=0.098 Sum_probs=43.2
Q ss_pred CCCEEEEEcCCCchHHH-HHHHHHhcCC----ceEEEeecCCccccCCccchhhhhhhh--cCCCeEEEEecCCCHHHHH
Q 047227 6 NERLCVVTGGRGFAARH-LVEMLIRYDM----FSVRIADLSDSIALEPHEEQGILGEAL--RSGRAHYVSFDLRHKAQVL 78 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~-l~~~Ll~~G~----~~V~~~~r~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~Dl~d~~~l~ 78 (485)
+..||.|.|| |.+|.. ++..|+.+-. .++.++|..+.+...... ...... .....+..... | ..
T Consensus 2 k~~KI~iIGa-Gsv~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--d---~~ 72 (167)
T d1u8xx1 2 KSFSIVIAGG-GSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAG---ACDVFIREKAPDIEFAATT--D---PE 72 (167)
T ss_dssp CCEEEEEECT-TSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHH---HHHHHHHHHCTTSEEEEES--C---HH
T ss_pred CCceEEEECC-ChhhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHH---HHHHHHHHhCCCcceEecC--C---hh
Confidence 3468999997 555554 4455554311 379999887543210000 011111 12233333321 2 56
Q ss_pred HHhcCCCEEEEcCCC
Q 047227 79 QALQGAEVVFHMAAP 93 (485)
Q Consensus 79 ~~~~~~d~Vih~aa~ 93 (485)
++++++|+||..++.
T Consensus 73 eal~~AD~Vvitag~ 87 (167)
T d1u8xx1 73 EAFTDVDFVMAHIRV 87 (167)
T ss_dssp HHHSSCSEEEECCCT
T ss_pred hccCCCCEEEECCCc
Confidence 788999999999984
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=88.83 E-value=0.29 Score=40.31 Aligned_cols=76 Identities=17% Similarity=0.126 Sum_probs=48.6
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEE--ecCCC-HHHHHHHh
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVS--FDLRH-KAQVLQAL 81 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~Dl~d-~~~l~~~~ 81 (485)
.++..|+|+| .|-+|...+..+...|..+|+++|+++.+. +... .-+.+.+. -|-.+ .+.+.+..
T Consensus 28 ~~g~tVlI~G-~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl----------~~Ak-~~GA~~~in~~~~~~~~~~~~~~~ 95 (176)
T d1d1ta2 28 KPGSTCVVFG-LGGVGLSVIMGCKSAGASRIIGIDLNKDKF----------EKAM-AVGATECISPKDSTKPISEVLSEM 95 (176)
T ss_dssp CTTCEEEEEC-CSHHHHHHHHHHHHTTCSEEEEECSCGGGH----------HHHH-HHTCSEEECGGGCSSCHHHHHHHH
T ss_pred CCCCEEEEEC-CCchhHHHHHHHHHcCCceEEEecCcHHHH----------HHHH-hcCCcEEECccccchHHHHHHHHh
Confidence 4567899997 599999999999999966899998775421 1111 11223222 12222 33444444
Q ss_pred --cCCCEEEEcCC
Q 047227 82 --QGAEVVFHMAA 92 (485)
Q Consensus 82 --~~~d~Vih~aa 92 (485)
.|+|+||.+.+
T Consensus 96 ~g~G~d~vi~~~g 108 (176)
T d1d1ta2 96 TGNNVGYTFEVIG 108 (176)
T ss_dssp HTSCCCEEEECSC
T ss_pred ccccceEEEEeCC
Confidence 36999998886
|
| >d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=88.56 E-value=0.68 Score=34.89 Aligned_cols=36 Identities=17% Similarity=0.278 Sum_probs=29.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhc---CCceEEEeecCCc
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRY---DMFSVRIADLSDS 43 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~---G~~~V~~~~r~~~ 43 (485)
.+++++|.| .|++|-.++..|.+. | .+|+++.+.+.
T Consensus 17 ~p~~v~IiG-gG~ig~E~A~~l~~~~~~g-~~Vtli~~~~~ 55 (117)
T d1feca2 17 APKRALCVG-GGYISIEFAGIFNAYKARG-GQVDLAYRGDM 55 (117)
T ss_dssp CCSEEEEEC-SSHHHHHHHHHHHHHSCTT-CEEEEEESSSS
T ss_pred cCCeEEEEC-CChHHHHHHHHhHhhcccc-cccceeccccc
Confidence 357999998 799999999876553 6 58999988765
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=88.27 E-value=0.13 Score=42.98 Aligned_cols=35 Identities=11% Similarity=0.194 Sum_probs=30.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCc
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDS 43 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~ 43 (485)
-++|.|.|+ |.+|+.++..++..| ++|+++|+.+.
T Consensus 4 I~~vaViGa-G~mG~~iA~~~a~~G-~~V~l~D~~~~ 38 (186)
T d1wdka3 4 VKQAAVLGA-GIMGGGIAYQSASKG-TPILMKDINEH 38 (186)
T ss_dssp CSSEEEECC-HHHHHHHHHHHHHTT-CCEEEECSSHH
T ss_pred CCEEEEECc-CHHHHHHHHHHHhCC-CeEEEEECCHH
Confidence 468999995 999999999999999 69999998754
|
| >d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Transcription corepressor CtbP species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]
Probab=88.22 E-value=0.12 Score=43.57 Aligned_cols=37 Identities=16% Similarity=0.074 Sum_probs=32.0
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCc
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDS 43 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~ 43 (485)
..++++.|.| .|-||+.+++.|..-| .+|.+.++...
T Consensus 47 L~gktvgIiG-~G~IG~~va~~l~~fg-~~v~~~d~~~~ 83 (193)
T d1mx3a1 47 IRGETLGIIG-LGRVGQAVALRAKAFG-FNVLFYDPYLS 83 (193)
T ss_dssp CTTCEEEEEC-CSHHHHHHHHHHHTTT-CEEEEECTTSC
T ss_pred eeCceEEEec-cccccccceeeeeccc-cceeeccCccc
Confidence 4578999997 9999999999999999 69999887643
|
| >d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=87.98 E-value=1.1 Score=33.89 Aligned_cols=73 Identities=12% Similarity=0.140 Sum_probs=48.9
Q ss_pred CCCEEEEEcCCC----------chHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHH
Q 047227 6 NERLCVVTGGRG----------FAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKA 75 (485)
Q Consensus 6 ~~~~iLVtGgtG----------~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~ 75 (485)
+.++|||.|+.. |-+.+.++.|.+.| +++.+++..+....... .-..-+...-...+
T Consensus 3 ~~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g-~~~IliN~NPeTVstd~------------d~aD~lYfeplt~e 69 (121)
T d1a9xa4 3 DREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDG-YETIMVNCNPETVSTDY------------DTSDRLYFEPVTLE 69 (121)
T ss_dssp SSCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTT-CEEEEECCCTTSSTTST------------TSSSEEECCCCSHH
T ss_pred CCCEEEEECCCcCcccccchhhHHHHHHHHHHHhcC-CeEEEEecChhhhhcCh------------hhcCceEEccCCHH
Confidence 457999999643 78899999999999 68888877665322111 11223344445677
Q ss_pred HHHHHhc--CCCEEEEcC
Q 047227 76 QVLQALQ--GAEVVFHMA 91 (485)
Q Consensus 76 ~l~~~~~--~~d~Vih~a 91 (485)
.+.++++ ++|.|+--.
T Consensus 70 ~v~~Ii~~E~p~~ii~~~ 87 (121)
T d1a9xa4 70 DVLEIVRIEKPKGVIVQY 87 (121)
T ss_dssp HHHHHHHHHCCSEEECSS
T ss_pred HHHHHHHHhCCCEEEeeh
Confidence 7888774 699887433
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Probab=87.87 E-value=0.38 Score=39.67 Aligned_cols=37 Identities=16% Similarity=0.102 Sum_probs=32.7
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCc
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDS 43 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~ 43 (485)
.+.++|+|.| +|..|-..+..|.++| ++|+++++.+.
T Consensus 41 ~~~k~V~IIG-aGPAGL~AA~~la~~G-~~Vtl~E~~~~ 77 (179)
T d1ps9a3 41 VQKKNLAVVG-AGPAGLAFAINAAARG-HQVTLFDAHSE 77 (179)
T ss_dssp SSCCEEEEEC-CSHHHHHHHHHHHTTT-CEEEEEESSSS
T ss_pred CCCcEEEEEC-ccHHHHHHHHHHHhhc-cceEEEeccCc
Confidence 4568999998 8999999999999999 59999988754
|
| >d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Formate dehydrogenase species: Pseudomonas sp., strain 101 [TaxId: 306]
Probab=87.72 E-value=0.25 Score=41.24 Aligned_cols=36 Identities=11% Similarity=0.093 Sum_probs=31.1
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCC
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSD 42 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~ 42 (485)
..++++.|.| .|-||+.+++.|..-| .+|...++..
T Consensus 42 l~~~~vgiiG-~G~IG~~va~~l~~fg-~~v~~~d~~~ 77 (188)
T d2naca1 42 LEAMHVGTVA-AGRIGLAVLRRLAPFD-VHLHYTDRHR 77 (188)
T ss_dssp CTTCEEEEEC-CSHHHHHHHHHHGGGT-CEEEEECSSC
T ss_pred ccccceeecc-ccccchhhhhhhhccC-ceEEEEeecc
Confidence 3568999988 9999999999999999 5899998764
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=87.56 E-value=0.62 Score=38.29 Aligned_cols=35 Identities=20% Similarity=0.202 Sum_probs=31.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCc
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDS 43 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~ 43 (485)
.-+|+|.| .|-.|..-++.....| ..|+++|.+..
T Consensus 29 pa~VvViG-aGvaG~~Aa~~A~~lG-A~V~v~D~~~~ 63 (183)
T d1l7da1 29 PARVLVFG-VGVAGLQAIATAKRLG-AVVMATDVRAA 63 (183)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHHHTT-CEEEEECSCST
T ss_pred CcEEEEEc-CcHHHHHHHHHHHHcC-CEEEEEeccHH
Confidence 35899998 7999999999999999 69999998754
|
| >d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Probab=87.39 E-value=0.88 Score=34.27 Aligned_cols=37 Identities=16% Similarity=0.248 Sum_probs=28.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCC--ceEEEeecCCc
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDM--FSVRIADLSDS 43 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~--~~V~~~~r~~~ 43 (485)
.+++++|.| +|++|-.++..|.+.|. .+|+++.+.+.
T Consensus 19 ~p~~v~ivG-gG~ig~E~A~~l~~l~~~~~~Vtli~~~~~ 57 (117)
T d1aoga2 19 PPRRVLTVG-GGFISVEFAGIFNAYKPKDGQVTLCYRGEM 57 (117)
T ss_dssp CCSEEEEEC-SSHHHHHHHHHHHHHCCTTCEEEEEESSSS
T ss_pred cCCeEEEEC-CcHHHHHHHHHhhhcccCCcEEEEEeccch
Confidence 357999998 59999999977765542 37999988754
|
| >d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase-like protein HI0607 species: Haemophilus influenzae [TaxId: 727]
Probab=87.01 E-value=0.32 Score=39.61 Aligned_cols=37 Identities=16% Similarity=0.175 Sum_probs=31.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCc
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDS 43 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~ 43 (485)
++++|||.| +|-.|++++..|.+.|..+|.+++|+..
T Consensus 16 ~~~~vlIlG-aGGaarai~~aL~~~g~~~I~I~nR~~~ 52 (167)
T d1npya1 16 KNAKVIVHG-SGGMAKAVVAAFKNSGFEKLKIYARNVK 52 (167)
T ss_dssp TTSCEEEEC-SSTTHHHHHHHHHHTTCCCEEEECSCHH
T ss_pred CCCeEEEEC-CCHHHHHHHHHHHHCCCCEEEEecccHH
Confidence 467899998 6899999999999999658999988754
|
| >d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, C-terminal domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=86.76 E-value=0.45 Score=37.96 Aligned_cols=36 Identities=22% Similarity=0.158 Sum_probs=29.3
Q ss_pred CCEEEEE-cCCCchHHHHHHHHHhcCCceEEEeecCCc
Q 047227 7 ERLCVVT-GGRGFAARHLVEMLIRYDMFSVRIADLSDS 43 (485)
Q Consensus 7 ~~~iLVt-GgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~ 43 (485)
+++++|. .|.||+|..+++.|.++| .+|+++.+.+.
T Consensus 39 ~~~vvi~d~ggg~ig~e~A~~la~~G-~~Vtlv~~~~~ 75 (156)
T d1djqa2 39 GKRVVILNADTYFMAPSLAEKLATAG-HEVTIVSGVHL 75 (156)
T ss_dssp CSEEEEEECCCSSHHHHHHHHHHHTT-CEEEEEESSCT
T ss_pred CCceEEEecCCChHHHHHHHHHHHcC-CeEEEEecCCc
Confidence 4566665 357999999999999999 59999988653
|
| >d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: Amyloid beta precursor protein-binding protein 1, APPBP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.68 E-value=0.19 Score=49.23 Aligned_cols=111 Identities=11% Similarity=0.046 Sum_probs=66.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccC-------Cccc-----hhhhhhhhc--CCC--eEEEEec
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALE-------PHEE-----QGILGEALR--SGR--AHYVSFD 70 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~-------~~~~-----~~~~~~~~~--~~~--v~~~~~D 70 (485)
..+|+|.|+ |-+|.++++.|...|--.++++|...-...+ ..+. .......+. .+. ++.+..+
T Consensus 25 ~s~VlvvG~-gglG~Ei~knLvl~GVg~itivD~d~v~~sdL~rqf~~~~~diGk~ka~~~~~~L~~lNp~v~i~~~~~~ 103 (529)
T d1yova1 25 SAHVCLINA-TATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKNRAEAAMEFLQELNSDVSGSFVEES 103 (529)
T ss_dssp HCEEEECCC-SHHHHHHHHHHHTTTCSEEEEECCSBCCHHHHHHCTTCCGGGTTSBHHHHHHHHHHTTCTTSBCCEESSC
T ss_pred CCCEEEECC-CHHHHHHHHHHHHhcCCEEEEEcCCcCChhhcCchhcCChhhCCCHHHHHHHHHHHHhCCCCcEEEEcCC
Confidence 358999985 6799999999999996689999865321100 0000 000011111 233 3334333
Q ss_pred CCCHHHH----HHHhcCCCEEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCccccc
Q 047227 71 LRHKAQV----LQALQGAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPSVVF 136 (485)
Q Consensus 71 l~d~~~l----~~~~~~~d~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~vy~ 136 (485)
.+.+ .+.+.++|+||.+.. |......+-++|++.++ .+|+++|.+.||
T Consensus 104 ---~~~~~~~~~~~~~~~dvVv~~~~--------------~~~~~~~l~~~c~~~~i-p~i~~~~~G~~G 155 (529)
T d1yova1 104 ---PENLLDNDPSFFCRFTVVVATQL--------------PESTSLRLADVLWNSQI-PLLICRTYGLVG 155 (529)
T ss_dssp ---HHHHHHSCGGGGGGCSEEEEESC--------------CHHHHHHHHHHHHHHTC-CEEEEEEETTEE
T ss_pred ---chhhhhhHHHHhcCCCEEEECCC--------------CHHHHHHHHHHHHHcCC-CEEEEeccCCEE
Confidence 3222 234667999996542 22333467888999887 588888877765
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=86.32 E-value=0.39 Score=38.83 Aligned_cols=36 Identities=19% Similarity=0.237 Sum_probs=30.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCC-ceEEEeecCCc
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDM-FSVRIADLSDS 43 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~-~~V~~~~r~~~ 43 (485)
+|||+|.| .|+.|-.++..|.+.++ .+|+++++.+.
T Consensus 2 gkrivIvG-gG~~G~e~A~~l~~~~~~~~Vtlie~~~~ 38 (186)
T d1fcda1 2 GRKVVVVG-GGTGGATAAKYIKLADPSIEVTLIEPNTD 38 (186)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHHHHCTTSEEEEECSCSC
T ss_pred CCcEEEEC-ccHHHHHHHHHHHHcCCCCcEEEEECCCc
Confidence 68999998 79999999999999874 37888877653
|
| >d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Methanothermus fervidus [TaxId: 2180]
Probab=85.97 E-value=1 Score=36.57 Aligned_cols=32 Identities=13% Similarity=0.236 Sum_probs=25.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEee
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIAD 39 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~ 39 (485)
|++|.|-| -|-||+.+.+.|..++.-+|..+.
T Consensus 1 M~~VgING-fGRIGR~v~R~l~~~~di~vvaIn 32 (171)
T d1cf2o1 1 MKAVAING-YGTVGKRVADAIAQQDDMKVIGVS 32 (171)
T ss_dssp CEEEEEEC-CSHHHHHHHHHHHTSSSEEEEEEE
T ss_pred CeEEEEEc-CcHHHHHHHHHHHhCCCceEEEEe
Confidence 46899997 899999999999888754555543
|
| >d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=85.82 E-value=0.46 Score=35.36 Aligned_cols=35 Identities=20% Similarity=0.073 Sum_probs=27.2
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecC
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLS 41 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~ 41 (485)
..+|+|+|.| +|.-|..++..|.+.+. +|+...|.
T Consensus 30 f~gK~VlVVG-~g~Sa~dia~~l~~~ak-~v~~~~~r 64 (107)
T d2gv8a2 30 FVGESVLVVG-GASSANDLVRHLTPVAK-HPIYQSLL 64 (107)
T ss_dssp GTTCCEEEEC-SSHHHHHHHHHHTTTSC-SSEEEECT
T ss_pred cCCCeEEEEC-CCCCHHHHHHHHHHhcC-EEEEEEec
Confidence 4679999998 78999999999998874 44444443
|
| >d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Klebsiella pneumoniae [TaxId: 573]
Probab=85.80 E-value=0.4 Score=43.46 Aligned_cols=35 Identities=23% Similarity=0.367 Sum_probs=31.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCc
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDS 43 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~ 43 (485)
+|+|+|+| +|+-|-..+..|.++| ++|.++.....
T Consensus 2 ~KKI~IIG-aG~sGL~aA~~L~k~G-~~V~viEk~~~ 36 (314)
T d2bi7a1 2 SKKILIVG-AGFSGAVIGRQLAEKG-HQVHIIDQRDH 36 (314)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHHTTT-CEEEEEESSSS
T ss_pred CCEEEEEC-CcHHHHHHHHHHHhCC-CCEEEEECCCC
Confidence 58999998 8999999999999999 59999987654
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=85.79 E-value=0.64 Score=37.78 Aligned_cols=76 Identities=20% Similarity=0.142 Sum_probs=45.3
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEE-EEe-cCCC-HHHHHHHh
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHY-VSF-DLRH-KAQVLQAL 81 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~-Dl~d-~~~l~~~~ 81 (485)
.++.+|+|.|+ |-+|...+..+...|-.+|+++++.+.+ ++. ...-++.. +.. +-.+ .+...+..
T Consensus 27 k~g~~VlI~G~-Gg~g~~~~~~~~~~g~~~Vi~~~~~~~r----------l~~-a~~~GAd~~in~~~~~~~~~~~~~~~ 94 (175)
T d1cdoa2 27 EPGSTCAVFGL-GAVGLAAVMGCHSAGAKRIIAVDLNPDK----------FEK-AKVFGATDFVNPNDHSEPISQVLSKM 94 (175)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGG----------HHH-HHHTTCCEEECGGGCSSCHHHHHHHH
T ss_pred CCCCEEEEEec-CCccchHHHHHHHHhhchheeecchHHH----------HHH-HHHcCCcEEEcCCCcchhHHHHHHhh
Confidence 45679999986 5577777777777775678888876542 111 11223333 322 1111 23444444
Q ss_pred --cCCCEEEEcCC
Q 047227 82 --QGAEVVFHMAA 92 (485)
Q Consensus 82 --~~~d~Vih~aa 92 (485)
.++|+|+.+.+
T Consensus 95 ~~~G~d~vid~~G 107 (175)
T d1cdoa2 95 TNGGVDFSLECVG 107 (175)
T ss_dssp HTSCBSEEEECSC
T ss_pred ccCCcceeeeecC
Confidence 36999999887
|
| >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Dihydroxypyridine hydroxylase DhpH species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=85.58 E-value=0.48 Score=41.01 Aligned_cols=35 Identities=17% Similarity=0.119 Sum_probs=30.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCc
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDS 43 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~ 43 (485)
.+||+|+| .|..|-.++..|.++| .+|+++++.+.
T Consensus 4 ~~kV~IiG-aG~aGl~~A~~L~~~G-~~v~v~Er~~~ 38 (265)
T d2voua1 4 TDRIAVVG-GSISGLTAALMLRDAG-VDVDVYERSPQ 38 (265)
T ss_dssp CSEEEEEC-CSHHHHHHHHHHHHTT-CEEEEECSSSS
T ss_pred CCcEEEEC-cCHHHHHHHHHHHHCC-CCEEEEeCCCC
Confidence 47999998 8999999999999999 59999987643
|
| >d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Transcriptional repressor Rex, C-terminal domain domain: Transcriptional repressor Rex, C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=85.42 E-value=1.5 Score=33.51 Aligned_cols=93 Identities=15% Similarity=0.129 Sum_probs=55.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCceEEEe-ecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcC-CC
Q 047227 8 RLCVVTGGRGFAARHLVEMLIRYDMFSVRIA-DLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQG-AE 85 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~-~d 85 (485)
.+|+|.| +|..|+.+++++.....+++.++ |-.+... .. .-.++..+..| .+.+..++ .+
T Consensus 4 ~~v~I~G-aG~~G~~l~~~l~~~~~~~iv~fiDdd~~k~----------G~--~I~Gi~V~~~~-----~l~~~~~~~i~ 65 (126)
T d2dt5a2 4 WGLCIVG-MGRLGSALADYPGFGESFELRGFFDVDPEKV----------GR--PVRGGVIEHVD-----LLPQRVPGRIE 65 (126)
T ss_dssp EEEEEEC-CSHHHHHHHHCSCCCSSEEEEEEEESCTTTT----------TC--EETTEEEEEGG-----GHHHHSTTTCC
T ss_pred ceEEEEc-CCHHHHHHHHhHhhcCCcEEEEEEeCchHhc----------CC--EECCEEEecHH-----HHHHHHhhccc
Confidence 4899998 89999999998765433555554 4333211 00 11356655332 35555543 66
Q ss_pred EEEEcCCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCCEEEEecCcc
Q 047227 86 VVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSSPS 133 (485)
Q Consensus 86 ~Vih~aa~~~~~~~~~~~~~~nv~~t~~ll~a~~~~~v~r~V~~SS~~ 133 (485)
.++-+.. ....+.+++.|.++|++.+.-++...
T Consensus 66 iai~~i~---------------~~~~~~I~d~l~~~gIk~I~~f~~~~ 98 (126)
T d2dt5a2 66 IALLTVP---------------REAAQKAADLLVAAGIKGILNFAPVV 98 (126)
T ss_dssp EEEECSC---------------HHHHHHHHHHHHHHTCCEEEECSSSC
T ss_pred EEEEeCC---------------HHHHHHHHHHHHHcCCCEEeecCcee
Confidence 5554432 12234688889999998887766543
|
| >d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-glycerate dehydrogenase species: Hyphomicrobium methylovorum [TaxId: 84]
Probab=85.39 E-value=0.24 Score=41.44 Aligned_cols=36 Identities=14% Similarity=0.221 Sum_probs=30.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCc
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDS 43 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~ 43 (485)
.++++.|.| .|-||+.+++.|..-| .+|.+.++...
T Consensus 46 ~g~tvgIiG-~G~IG~~va~~l~~fg-~~v~~~d~~~~ 81 (191)
T d1gdha1 46 DNKTLGIYG-FGSIGQALAKRAQGFD-MDIDYFDTHRA 81 (191)
T ss_dssp TTCEEEEEC-CSHHHHHHHHHHHTTT-CEEEEECSSCC
T ss_pred cccceEEee-cccchHHHHHHHHhhc-ccccccccccc
Confidence 468999998 9999999999999999 68988886543
|
| >d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=85.22 E-value=0.32 Score=40.68 Aligned_cols=33 Identities=27% Similarity=0.336 Sum_probs=27.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCc
Q 047227 8 RLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDS 43 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~ 43 (485)
|||.|.| .||+|-.++..| ++| ++|+++|..+.
T Consensus 1 MkI~ViG-lG~vGl~~a~~~-a~g-~~V~g~Din~~ 33 (196)
T d1dlja2 1 MKIAVAG-SGYVGLSLGVLL-SLQ-NEVTIVDILPS 33 (196)
T ss_dssp CEEEEEC-CSHHHHHHHHHH-TTT-SEEEEECSCHH
T ss_pred CEEEEEC-CChhHHHHHHHH-HCC-CcEEEEECCHH
Confidence 6899996 999999998655 679 59999997754
|
| >d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=84.72 E-value=0.48 Score=37.91 Aligned_cols=32 Identities=13% Similarity=0.035 Sum_probs=25.2
Q ss_pred EEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCc
Q 047227 9 LCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDS 43 (485)
Q Consensus 9 ~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~ 43 (485)
||-+.| .|..|..+++.|++.|+ .| +.+|.++
T Consensus 2 kIg~IG-lG~MG~~ma~~L~~~g~-~~-~~~~~~~ 33 (156)
T d2cvza2 2 KVAFIG-LGAMGYPMAGHLARRFP-TL-VWNRTFE 33 (156)
T ss_dssp CEEEEC-CSTTHHHHHHHHHTTSC-EE-EECSSTH
T ss_pred eEEEEe-HHHHHHHHHHHHHhCCC-EE-EEeCCHH
Confidence 577887 89999999999999984 55 4555544
|
| >d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, middle domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=84.52 E-value=0.67 Score=39.64 Aligned_cols=37 Identities=16% Similarity=0.421 Sum_probs=32.3
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCc
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDS 43 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~ 43 (485)
...++|+|.| +|+.|-..+..|.++| ++|+++.+.+.
T Consensus 47 ~~~k~VvIIG-aGpAGl~aA~~l~~~G-~~v~l~E~~~~ 83 (233)
T d1djqa3 47 KNKDSVLIVG-AGPSGSEAARVLMESG-YTVHLTDTAEK 83 (233)
T ss_dssp SSCCEEEEEC-CSHHHHHHHHHHHHTT-CEEEEECSSSS
T ss_pred cCCceEEEEc-ccHHHHHHHHHHHHhc-cceeeEeeccc
Confidence 4568999998 8999999999999999 59999987654
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Probab=84.15 E-value=0.52 Score=42.14 Aligned_cols=38 Identities=21% Similarity=0.306 Sum_probs=32.4
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCc
Q 047227 4 EENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDS 43 (485)
Q Consensus 4 ~~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~ 43 (485)
+.+.++|+|+| +|..|-..+..|.++| ++|+++.+.+.
T Consensus 27 ~~~pkkV~IIG-aG~aGLsaA~~L~~~G-~~V~vlE~~~~ 64 (370)
T d2iida1 27 TSNPKHVVIVG-AGMAGLSAAYVLAGAG-HQVTVLEASER 64 (370)
T ss_dssp CSSCCEEEEEC-CBHHHHHHHHHHHHHT-CEEEEECSSSS
T ss_pred CCCCCeEEEEC-CCHHHHHHHHHHHHCC-CCEEEEeCCCC
Confidence 34568999998 8999999999999999 59999987643
|
| >d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=84.13 E-value=0.34 Score=40.24 Aligned_cols=37 Identities=16% Similarity=0.043 Sum_probs=30.8
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCc
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDS 43 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~ 43 (485)
..++++.|.| .|-||+.+++.|..-| .+|.+.++...
T Consensus 42 l~~k~vgiiG-~G~IG~~va~~~~~fg-~~v~~~d~~~~ 78 (184)
T d1ygya1 42 IFGKTVGVVG-LGRIGQLVAQRIAAFG-AYVVAYDPYVS 78 (184)
T ss_dssp CTTCEEEEEC-CSHHHHHHHHHHHTTT-CEEEEECTTSC
T ss_pred ccceeeeecc-ccchhHHHHHHhhhcc-ceEEeecCCCC
Confidence 3567888887 8999999999999989 58998887543
|
| >d1q0qa2 c.2.1.3 (A:1-125,A:275-300) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase species: Escherichia coli [TaxId: 562]
Probab=84.06 E-value=0.53 Score=37.50 Aligned_cols=35 Identities=11% Similarity=0.109 Sum_probs=27.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcC-CceEEEeecC
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYD-MFSVRIADLS 41 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G-~~~V~~~~r~ 41 (485)
|++|.|.|+||.||.....-+.+.. .++|.++.-.
T Consensus 1 MK~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~Lsa~ 36 (151)
T d1q0qa2 1 MKQLTILGSTGSIGCSTLDVVRHNPEHFRVVALVAG 36 (151)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHCTTTEEEEEEEES
T ss_pred CCeEEEEcCCcHHHHHHHHHHHhCCCCcEEEEEEec
Confidence 4789999999999999999887763 3577766543
|
| >d2blna2 c.65.1.1 (A:1-203) Polymyxin resistance protein ArnA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Formyltransferase superfamily: Formyltransferase family: Formyltransferase domain: Polymyxin resistance protein ArnA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=83.96 E-value=0.57 Score=39.40 Aligned_cols=29 Identities=14% Similarity=-0.046 Sum_probs=23.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCceEEEe
Q 047227 8 RLCVVTGGRGFAARHLVEMLIRYDMFSVRIA 38 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~ 38 (485)
|||+|.| ++-.|..+.+.|++.|+ +|.++
T Consensus 1 Mkiv~~~-~~~~g~~~l~~L~~~g~-~I~~V 29 (203)
T d2blna2 1 MKTVVFA-YHDMGCLGIEALLAAGY-EISAI 29 (203)
T ss_dssp CEEEEEE-CHHHHHHHHHHHHHTTC-EEEEE
T ss_pred CeEEEEe-cCHHHHHHHHHHHHCCC-CEEEE
Confidence 6888886 55689999999999995 66544
|
| >d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Myxococcus xanthus [TaxId: 34]
Probab=83.08 E-value=0.43 Score=41.89 Aligned_cols=34 Identities=15% Similarity=0.116 Sum_probs=29.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCc
Q 047227 8 RLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDS 43 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~ 43 (485)
|+|+|+| +|.-|-..+..|.++| ++|+++.+.+.
T Consensus 1 m~V~IIG-aG~aGL~aA~~L~~~G-~~V~vlE~~~~ 34 (347)
T d2ivda1 1 MNVAVVG-GGISGLAVAHHLRSRG-TDAVLLESSAR 34 (347)
T ss_dssp CCEEEEC-CBHHHHHHHHHHHTTT-CCEEEECSSSS
T ss_pred CeEEEEC-CCHHHHHHHHHHHhCC-CCEEEEecCCC
Confidence 6799998 6999999999999999 59999987643
|
| >d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.93 E-value=0.64 Score=37.47 Aligned_cols=67 Identities=18% Similarity=0.198 Sum_probs=47.0
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCccchhhhhhhhcCCCeEEEEecCCCHHHHHHHhcCC
Q 047227 5 ENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDLRHKAQVLQALQGA 84 (485)
Q Consensus 5 ~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 84 (485)
..+|+++|.| .|.+|+.+++.|...| .+|.+.+..+-.. ++... .+.+.. .+.+++...
T Consensus 22 l~Gk~v~V~G-yG~iG~g~A~~~rg~G-~~V~v~e~dp~~a---------l~A~~--dG~~v~--------~~~~a~~~a 80 (163)
T d1li4a1 22 IAGKVAVVAG-YGDVGKGCAQALRGFG-ARVIITEIDPINA---------LQAAM--EGYEVT--------TMDEACQEG 80 (163)
T ss_dssp CTTCEEEEEC-CSHHHHHHHHHHHHTT-CEEEEECSCHHHH---------HHHHH--TTCEEC--------CHHHHTTTC
T ss_pred ecCCEEEEec-cccccHHHHHHHHhCC-CeeEeeecccchh---------HHhhc--CceEee--------ehhhhhhhc
Confidence 3578999997 9999999999999999 6999998765321 11111 122221 256677778
Q ss_pred CEEEEcCC
Q 047227 85 EVVFHMAA 92 (485)
Q Consensus 85 d~Vih~aa 92 (485)
|+|+-+.+
T Consensus 81 divvtaTG 88 (163)
T d1li4a1 81 NIFVTTTG 88 (163)
T ss_dssp SEEEECSS
T ss_pred cEEEecCC
Confidence 88887766
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=82.45 E-value=0.62 Score=40.87 Aligned_cols=35 Identities=14% Similarity=0.152 Sum_probs=30.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCc
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDS 43 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~ 43 (485)
+|||+|+| +|.-|-..+..|.++| ++|+++.+.+.
T Consensus 1 ~KkV~IIG-aG~aGL~aA~~La~~G-~~V~vlE~~~~ 35 (373)
T d1seza1 1 AKRVAVIG-AGVSGLAAAYKLKIHG-LNVTVFEAEGK 35 (373)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHHTTS-CEEEEECSSSS
T ss_pred CCEEEEEC-cCHHHHHHHHHHHhCC-CCEEEEeCCCC
Confidence 47999998 8999999999999999 59999987543
|
| >d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glycine oxidase ThiO species: Bacillus sp. [TaxId: 1409]
Probab=82.45 E-value=0.51 Score=41.27 Aligned_cols=32 Identities=16% Similarity=0.207 Sum_probs=28.5
Q ss_pred EEEEEcCCCchHHHHHHHHHhcCCceEEEeecCC
Q 047227 9 LCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSD 42 (485)
Q Consensus 9 ~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~ 42 (485)
.|+|+| +|..|..++.+|.++| .+|+++++..
T Consensus 6 DvvIIG-aGi~Gls~A~~La~~G-~~V~vlE~~~ 37 (276)
T d1ryia1 6 EAVVIG-GGIIGSAIAYYLAKEN-KNTALFESGT 37 (276)
T ss_dssp EEEEEC-CSHHHHHHHHHHHHTT-CCEEEECSSS
T ss_pred CEEEEC-cCHHHHHHHHHHHHCC-CcEEEEeCCC
Confidence 389998 8999999999999999 6999998753
|
| >d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Cow (Bos taurus) [TaxId: 9913]
Probab=82.43 E-value=2.2 Score=37.67 Aligned_cols=36 Identities=17% Similarity=0.190 Sum_probs=29.4
Q ss_pred CCCCCCCEEEEEcCCCchHHHHHHHHHhcCCceEEEee
Q 047227 2 SGEENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIAD 39 (485)
Q Consensus 2 ~~~~~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~ 39 (485)
+.+.++++|+|-| -|-+|+++++.|.+.| .+|+.++
T Consensus 31 ~~~L~gktvaIqG-fGnVG~~~A~~L~e~G-akvv~vs 66 (293)
T d1hwxa1 31 TPGFGDKTFAVQG-FGNVGLHSMRYLHRFG-AKCVAVG 66 (293)
T ss_dssp CSSSTTCEEEEEC-CSHHHHHHHHHHHHTT-CEEEEEE
T ss_pred CCCCCCCEEEEEC-CCHHHHHHHHHHHHCC-CEEEEEE
Confidence 3455778999998 7999999999999999 5666553
|
| >d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.04 E-value=1.3 Score=34.40 Aligned_cols=35 Identities=17% Similarity=0.082 Sum_probs=28.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHH----hcCCceEEEeecCCc
Q 047227 7 ERLCVVTGGRGFAARHLVEMLI----RYDMFSVRIADLSDS 43 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll----~~G~~~V~~~~r~~~ 43 (485)
.++++|.| .||+|-.++..|. +.| .+|+++.+.+.
T Consensus 37 ~k~i~IvG-gG~~G~E~A~~l~~~~~~~g-~~Vt~i~~~~~ 75 (137)
T d1m6ia2 37 VKSITIIG-GGFLGSELACALGRKARALG-TEVIQLFPEKG 75 (137)
T ss_dssp CSEEEEEC-CSHHHHHHHHHHHHHHHHHT-CEEEEECSSSS
T ss_pred CCEEEEEC-CCHHHHHHHHHHHHHHHhcC-CEEEEeccccc
Confidence 47899997 6999999998885 357 58998887654
|
| >d1r0ka2 c.2.1.3 (A:3-126,A:265-290) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase species: Zymomonas mobilis [TaxId: 542]
Probab=81.74 E-value=0.62 Score=37.08 Aligned_cols=34 Identities=18% Similarity=0.223 Sum_probs=26.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcC-CceEEEeec
Q 047227 7 ERLCVVTGGRGFAARHLVEMLIRYD-MFSVRIADL 40 (485)
Q Consensus 7 ~~~iLVtGgtG~iG~~l~~~Ll~~G-~~~V~~~~r 40 (485)
+++|.|.|+||-||....+-+.+.. .++|.++.-
T Consensus 2 pK~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~lsa 36 (150)
T d1r0ka2 2 PRTVTVLGATGSIGHSTLDLIERNLDRYQVIALTA 36 (150)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTGGGEEEEEEEE
T ss_pred CcEEEEECCCcHHHHHHHHHHHcCCCCcEEEEEEe
Confidence 5899999999999999999887752 256666543
|
| >d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=81.22 E-value=0.8 Score=37.90 Aligned_cols=35 Identities=17% Similarity=0.173 Sum_probs=28.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcCC-ceEEEeecCCc
Q 047227 8 RLCVVTGGRGFAARHLVEMLIRYDM-FSVRIADLSDS 43 (485)
Q Consensus 8 ~~iLVtGgtG~iG~~l~~~Ll~~G~-~~V~~~~r~~~ 43 (485)
|||+|.| +|++|-.++..|.+.+. .+|+++++...
T Consensus 1 ~KVvIIG-gG~~G~e~A~~l~~~~~~~~V~v~~~~~~ 36 (198)
T d1nhpa1 1 MKVIVLG-SSHGGYEAVEELLNLHPDAEIQWYEKGDF 36 (198)
T ss_dssp CEEEEEC-SSHHHHHHHHHHHHHCTTSEEEEEESSSS
T ss_pred CEEEEEC-CcHHHHHHHHHHHhcCCCCeEEEEeCCCc
Confidence 7899998 78999999999988743 37888887643
|
| >d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: 2,4-dienoyl-CoA reductase species: Yeast (Candida tropicalis) [TaxId: 5482]
Probab=81.08 E-value=2 Score=35.22 Aligned_cols=36 Identities=8% Similarity=0.043 Sum_probs=28.9
Q ss_pred CCCEEEE-EcCCCchHHHHHHHHHhcCCceEEEeecCC
Q 047227 6 NERLCVV-TGGRGFAARHLVEMLIRYDMFSVRIADLSD 42 (485)
Q Consensus 6 ~~~~iLV-tGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~ 42 (485)
++.+++| +||+|-+|...++.....| .+|+++.+.+
T Consensus 28 ~g~~vli~~ga~g~vG~~aiqlAk~~G-a~vI~~v~~~ 64 (189)
T d1gu7a2 28 PGKDWFIQNGGTSAVGKYASQIGKLLN-FNSISVIRDR 64 (189)
T ss_dssp TTTCEEEESCTTSHHHHHHHHHHHHHT-CEEEEEECCC
T ss_pred CCCEEEEEeCCCchHHHHHHHHHhhcC-CeEEEEEecc
Confidence 3456666 5899999999999999999 6888777654
|
| >d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Guanine nucleotide dissociation inhibitor, GDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=81.06 E-value=0.8 Score=38.66 Aligned_cols=31 Identities=26% Similarity=0.221 Sum_probs=28.0
Q ss_pred EEEEcCCCchHHHHHHHHHhcCCceEEEeecCC
Q 047227 10 CVVTGGRGFAARHLVEMLIRYDMFSVRIADLSD 42 (485)
Q Consensus 10 iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~ 42 (485)
|+|+| +|.-|...+..|.++| .+|.++.+..
T Consensus 8 viViG-aG~~Gl~~A~~La~~G-~~V~vlE~~~ 38 (297)
T d2bcgg1 8 VIVLG-TGITECILSGLLSVDG-KKVLHIDKQD 38 (297)
T ss_dssp EEEEC-CSHHHHHHHHHHHHTT-CCEEEECSSS
T ss_pred EEEEC-cCHHHHHHHHHHHHCC-CCEEEEcCCC
Confidence 78888 9999999999999999 5999998764
|
| >d1fmta2 c.65.1.1 (A:1-206) Methionyl-tRNAfmet formyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Formyltransferase superfamily: Formyltransferase family: Formyltransferase domain: Methionyl-tRNAfmet formyltransferase species: Escherichia coli [TaxId: 562]
Probab=80.63 E-value=1.7 Score=36.34 Aligned_cols=86 Identities=12% Similarity=-0.037 Sum_probs=43.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcCCceEEEeecCCccccCCcc-chhhhhhhhcCCCeEEEEecCCCHHHHHHHhc--
Q 047227 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHE-EQGILGEALRSGRAHYVSFDLRHKAQVLQALQ-- 82 (485)
Q Consensus 6 ~~~~iLVtGgtG~iG~~l~~~Ll~~G~~~V~~~~r~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 82 (485)
+.|||++.| ++..+..+.+.|++.|+..+.++.+.+........ ............++.....+..+.+...+.++
T Consensus 2 ~~mKI~f~G-~~~~~~~~L~~L~~~~~~i~~Vit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (206)
T d1fmta2 2 ESLRIIFAG-TPDFAARHLDALLSSGHNVVGVFTQPDRPAGRGKKLMPSPVKVLAEEKGLPVFQPVSLRPQENQQLVAEL 80 (206)
T ss_dssp CCCEEEEEE-CSHHHHHHHHHHHHTTCEEEEEECCCCBC------CBCCHHHHHHHHTTCCEECCSCSCSHHHHHHHHHT
T ss_pred CCcEEEEEC-CCHHHHHHHHHHHhCCCCEEEEEeCCCcccccCccccccchhhhhhccCccccccccccchhhHHHHhhh
Confidence 358999997 67889999999999995334444432221111000 00011112222345555554444444455554
Q ss_pred CCCEEEEcCC
Q 047227 83 GAEVVFHMAA 92 (485)
Q Consensus 83 ~~d~Vih~aa 92 (485)
++|.++-+..
T Consensus 81 ~~d~~v~~~~ 90 (206)
T d1fmta2 81 QADVMVVVAY 90 (206)
T ss_dssp TCSEEEEESC
T ss_pred cceEEEeecc
Confidence 4676665443
|