Citrus Sinensis ID: 047244


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-----
ILISSLIPSASEPAYYYSRNNHRIPILLRSGDPIRAWVDYSSQEMLIKVSKSPLGVPKPRRPLISFPIDLSLVLDEYMYRGFSASTGLITASHNVHGWSISIGGGKAQDLNPTKVPTLEKKKKIS
ccccccEEcccccccEEEccccEEEEEEcccccEEEEEEEcccccEEEEEEEEccccccccccEEEEEcccccccccEEEEEEEcccccccEEEEEEEEEEEccccccccccccccccccccccc
cccccccEcccccccEEcccccEEEEEEEccccEEEEEEEccccEEEEEEEcccccccccccEEEEEEccHHHHcccEEEEEEcccccEccEEEEEEEEEcccccccccccHHcccccccccccc
ilisslipsasepayyysrnnhripillrsgdpirawVDYSSQEMLIKvsksplgvpkprrplisfpidlsLVLDEYMYrgfsastglitashnvhgwsisigggkaqdlnptkvptlekkkkis
ilisslipsasepAYYYSRNNHRIPILLRSGDPIRAWVDYSSQEMLIKVsksplgvpkprrpLISFPIDLSLVLDEYMYRGFSASTGLITASHNVHGWSISigggkaqdlnptkvptlekkkkis
ILISSLIPSASEPAYYYSRNNHRIPILLRSGDPIRAWVDYSSQEMLIKVSKSPLGVPKPRRPLISFPIDLSLVLDEYMYRGFSASTGLITASHNVHGWSISIGGGKAQDLNPTKVPTLEKKKKIS
*************AYYYSRNNHRIPILLRSGDPIRAWVDYSSQEMLIKVSKSPLGVPKPRRPLISFPIDLSLVLDEYMYRGFSASTGLITASHNVHGWSISIGG*********************
ILISSLIPSASEPAYYYSRNNHRIPILLRSGDPIRAWVDYSSQEMLIKVSKSPLGVPKPRRPLISFPIDLSLVLDEYMYRGFSASTGLITASHNVHGWSISIGGGKAQDLNP*************
ILISSLIPSASEPAYYYSRNNHRIPILLRSGDPIRAWVDYSSQEMLIKVSKSPLGVPKPRRPLISFPIDLSLVLDEYMYRGFSASTGLITASHNVHGWSISIGGGKAQDLNPTKV**********
*LISSLIPSASEPAYYYSRNNHRIPILLRSGDPIRAWVDYSSQEMLIKVSKSPLGVPKPRRPLISFPIDLSLVLDEYMYRGFSASTGLITASHNVHGWSISIGGGKAQDLNPTKVPTLE******
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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ILISSLIPSASEPAYYYSRNNHRIPILLRSGDPIRAWVDYSSQEMLIKVSKSPLGVPKPRRPLISFPIDLSLVLDEYMYRGFSASTGLITASHNVHGWSISIGGGKAQDLNPTKVPTLEKKKKIS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query125 2.2.26 [Sep-21-2011]
Q9ZW11 623 Putative inactive L-type yes no 0.832 0.166 0.438 3e-19
Q9ZW09 627 Probable inactive L-type no no 0.936 0.186 0.411 6e-19
O04534 666 Putative L-type lectin-do no no 0.936 0.175 0.398 2e-18
Q9M3D8 664 L-type lectin-domain cont no no 0.888 0.167 0.401 2e-16
Q9M2S4 684 L-type lectin-domain cont no no 0.824 0.150 0.423 3e-16
O81291 669 L-type lectin-domain cont no no 0.936 0.174 0.406 5e-15
Q9LSR9 657 L-type lectin-domain cont no no 0.928 0.176 0.386 1e-14
Q9M1G3 669 Probable L-type lectin-do no no 0.96 0.179 0.379 2e-14
Q9M3D7 667 Putative L-type lectin-do no no 0.816 0.152 0.384 3e-14
O81292 674 L-type lectin-domain cont no no 0.944 0.175 0.381 5e-14
>sp|Q9ZW11|LRK32_ARATH Putative inactive L-type lectin-domain containing receptor kinase III.2 OS=Arabidopsis thaliana GN=LECRK32 PE=3 SV=1 Back     alignment and function desciption
 Score = 93.6 bits (231), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 46/105 (43%), Positives = 68/105 (64%), Gaps = 1/105 (0%)

Query: 10  ASEPAYYYSRNNHRIPILLRSGDPIRAWVDYSSQEMLIKVSKSPLGVPKPRRPLISFPID 69
           ++   Y+  R    I + L SG PIR W++Y++ E ++ V+ +PL  PKP+ PL+S  ++
Sbjct: 171 STSAEYFDDREAKNISLRLASGKPIRVWIEYNATETMLNVTLAPLDRPKPKLPLLSRKLN 230

Query: 70  LSLVLDEYMYRGFSASTGLITASHNVHGWSISIGGGKAQDLNPTK 114
           LS ++ E  Y GFSA+TG +T+SH V GWS SI  GKA D + TK
Sbjct: 231 LSGIISEENYVGFSAATGTVTSSHFVLGWSFSI-EGKASDFDITK 274





Arabidopsis thaliana (taxid: 3702)
>sp|Q9ZW09|LRK31_ARATH Probable inactive L-type lectin-domain containing receptor kinase III.1 OS=Arabidopsis thaliana GN=LECRK31 PE=3 SV=1 Back     alignment and function description
>sp|O04534|LRK51_ARATH Putative L-type lectin-domain containing receptor kinase V.1 OS=Arabidopsis thaliana GN=LECRK51 PE=3 SV=1 Back     alignment and function description
>sp|Q9M3D8|LRK13_ARATH L-type lectin-domain containing receptor kinase I.3 OS=Arabidopsis thaliana GN=LECRK13 PE=1 SV=1 Back     alignment and function description
>sp|Q9M2S4|LRKS4_ARATH L-type lectin-domain containing receptor kinase S.4 OS=Arabidopsis thaliana GN=LECRKS4 PE=1 SV=1 Back     alignment and function description
>sp|O81291|LRK44_ARATH L-type lectin-domain containing receptor kinase IV.4 OS=Arabidopsis thaliana GN=LECRK44 PE=3 SV=1 Back     alignment and function description
>sp|Q9LSR9|LRK18_ARATH L-type lectin-domain containing receptor kinase I.8 OS=Arabidopsis thaliana GN=LECRK18 PE=2 SV=1 Back     alignment and function description
>sp|Q9M1G3|LRK16_ARATH Probable L-type lectin-domain containing receptor kinase I.6 OS=Arabidopsis thaliana GN=LECRK16 PE=2 SV=1 Back     alignment and function description
>sp|Q9M3D7|LRK14_ARATH Putative L-type lectin-domain containing receptor kinase I.4 OS=Arabidopsis thaliana GN=LECRK14 PE=3 SV=1 Back     alignment and function description
>sp|O81292|LRK43_ARATH L-type lectin-domain containing receptor kinase IV.3 OS=Arabidopsis thaliana GN=LECRK43 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query125
147860501 625 hypothetical protein VITISV_016437 [Viti 0.928 0.185 0.632 1e-35
356528060 666 PREDICTED: L-type lectin-domain containi 0.936 0.175 0.571 9e-30
296081486 531 unnamed protein product [Vitis vinifera] 0.648 0.152 0.682 2e-26
225439478 680 PREDICTED: L-type lectin-domain containi 0.968 0.177 0.447 3e-21
225439476 672 PREDICTED: L-type lectin-domain containi 0.976 0.181 0.435 4e-20
255558978 662 kinase, putative [Ricinus communis] gi|2 0.936 0.176 0.453 4e-20
359481749 1258 PREDICTED: L-type lectin-domain containi 0.824 0.081 0.490 2e-19
297841745 633 lectin protein kinase family protein [Ar 0.936 0.184 0.406 8e-19
255584540 683 kinase, putative [Ricinus communis] gi|2 0.968 0.177 0.439 9e-19
225448524 695 PREDICTED: L-type lectin-domain containi 0.92 0.165 0.4 1e-18
>gi|147860501|emb|CAN83975.1| hypothetical protein VITISV_016437 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  153 bits (387), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 74/117 (63%), Positives = 94/117 (80%), Gaps = 1/117 (0%)

Query: 1   ILISSLIPSASEPAYYYSRNNHRIPILLRSGDPIRAWVDYSSQEMLIKVSKSPLGVPKPR 60
           I ISSLI + S+PA YY  NN    I  +SGDPI+AW++Y+SQE L+ V+ SPLG+PK  
Sbjct: 157 IDISSLISNVSKPAAYYFTNNSNNSIAFKSGDPIQAWIEYNSQEQLMNVTISPLGIPKSF 216

Query: 61  RPLISFPIDLSLVLDEYMYRGFSASTGLITASHNVHGWSISIGGGKAQDLNPTKVPT 117
           RPLISFPIDLS+VL+EYM+ GFSASTGL+TA+HNVHGWS  I GG+A DL+P ++P+
Sbjct: 217 RPLISFPIDLSMVLNEYMHIGFSASTGLLTAAHNVHGWSFRI-GGRAADLDPLRLPS 272




Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356528060|ref|XP_003532623.1| PREDICTED: L-type lectin-domain containing receptor kinase S.4-like [Glycine max] Back     alignment and taxonomy information
>gi|296081486|emb|CBI20009.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225439478|ref|XP_002267692.1| PREDICTED: L-type lectin-domain containing receptor kinase S.4-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|225439476|ref|XP_002267597.1| PREDICTED: L-type lectin-domain containing receptor kinase S.4-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|255558978|ref|XP_002520512.1| kinase, putative [Ricinus communis] gi|223540354|gb|EEF41925.1| kinase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|359481749|ref|XP_003632669.1| PREDICTED: L-type lectin-domain containing receptor kinase IV.2-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|297841745|ref|XP_002888754.1| lectin protein kinase family protein [Arabidopsis lyrata subsp. lyrata] gi|297334595|gb|EFH65013.1| lectin protein kinase family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|255584540|ref|XP_002532997.1| kinase, putative [Ricinus communis] gi|223527226|gb|EEF29389.1| kinase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|225448524|ref|XP_002273348.1| PREDICTED: L-type lectin-domain containing receptor kinase V.9-like [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query125
TAIR|locus:2043127 623 AT2G29250 [Arabidopsis thalian 0.92 0.184 0.435 9e-20
TAIR|locus:2025037258 AT1G07460 [Arabidopsis thalian 0.92 0.445 0.427 5.1e-19
TAIR|locus:2043162 627 AT2G29220 [Arabidopsis thalian 0.92 0.183 0.410 2.3e-18
TAIR|locus:2020608 666 AT1G70110 [Arabidopsis thalian 0.936 0.175 0.389 5.4e-18
TAIR|locus:2099941 684 AT3G55550 [Arabidopsis thalian 0.952 0.173 0.403 2.5e-17
TAIR|locus:2078337 664 AT3G45410 [Arabidopsis thalian 0.976 0.183 0.382 1.7e-16
TAIR|locus:2085587 669 AT3G45440 [Arabidopsis thalian 0.944 0.176 0.377 5.6e-15
TAIR|locus:2144025 657 AT5G60280 [Arabidopsis thalian 0.944 0.179 0.380 7e-15
TAIR|locus:2078332 682 AT3G45330 [Arabidopsis thalian 0.912 0.167 0.364 9.5e-15
TAIR|locus:2133239 669 AT4G02420 [Arabidopsis thalian 0.92 0.171 0.405 1.5e-14
TAIR|locus:2043127 AT2G29250 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 244 (91.0 bits), Expect = 9.0e-20, P = 9.0e-20
 Identities = 51/117 (43%), Positives = 76/117 (64%)

Query:     3 ISSLIPSASEPAYYYS-RNNHRIPILLRSGDPIRAWVDYSSQEMLIKVSKSPLGVPKPRR 61
             ++ +I   S  A Y+  R    I + L SG PIR W++Y++ E ++ V+ +PL  PKP+ 
Sbjct:   163 LNGVISIESTSAEYFDDREAKNISLRLASGKPIRVWIEYNATETMLNVTLAPLDRPKPKL 222

Query:    62 PLISFPIDLSLVLDEYMYRGFSASTGLITASHNVHGWSISIGGGKAQDLNPTKVPTL 118
             PL+S  ++LS ++ E  Y GFSA+TG +T+SH V GWS SI G KA D + TK+P+L
Sbjct:   223 PLLSRKLNLSGIISEENYVGFSAATGTVTSSHFVLGWSFSIEG-KASDFDITKLPSL 278




GO:0004672 "protein kinase activity" evidence=IEA
GO:0005524 "ATP binding" evidence=IEA
GO:0005886 "plasma membrane" evidence=ISM
GO:0006468 "protein phosphorylation" evidence=IEA
GO:0016301 "kinase activity" evidence=ISS
GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA
TAIR|locus:2025037 AT1G07460 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2043162 AT2G29220 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2020608 AT1G70110 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2099941 AT3G55550 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2078337 AT3G45410 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2085587 AT3G45440 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2144025 AT5G60280 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2078332 AT3G45330 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2133239 AT4G02420 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Your Input:
GSVIVG00031525001
SubName- Full=Chromosome chr12 scaffold_57, whole genome shotgun sequence; (647 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query125
cd06899236 cd06899, lectin_legume_LecRK_Arcelin_ConA, legume 2e-31
pfam00139231 pfam00139, Lectin_legB, Legume lectin domain 7e-28
cd01951223 cd01951, lectin_L-type, legume lectins 2e-06
>gnl|CDD|173887 cd06899, lectin_legume_LecRK_Arcelin_ConA, legume lectins, lectin-like receptor kinases, arcelin, concanavalinA, and alpha-amylase inhibitor Back     alignment and domain information
 Score =  110 bits (278), Expect = 2e-31
 Identities = 45/104 (43%), Positives = 66/104 (63%), Gaps = 7/104 (6%)

Query: 1   ILISSLIPSASEPAYYYSRNNHRIPILLRSGDPIRAWVDYSSQEMLIKVSKSPLGVPKPR 60
           I ++SL+   S  A Y+  +  +    L+SG P++AW+DY S    + V+ +  GV KP+
Sbjct: 140 IDVNSLV---SVKAGYWDDDGGK----LKSGKPMQAWIDYDSSSKRLSVTLAYSGVAKPK 192

Query: 61  RPLISFPIDLSLVLDEYMYRGFSASTGLITASHNVHGWSISIGG 104
           +PL+S+P+DLS VL E +Y GFSASTGL+T  H +  WS S  G
Sbjct: 193 KPLLSYPVDLSKVLPEEVYVGFSASTGLLTELHYILSWSFSSNG 236


This alignment model includes the legume lectins (also known as agglutinins), the arcelin (also known as phytohemagglutinin-L) family of lectin-like defense proteins, the LecRK family of lectin-like receptor kinases, concanavalinA (ConA), and an alpha-amylase inhibitor. Arcelin is a major seed glycoprotein discovered in kidney beans (Phaseolus vulgaris) that has insecticidal properties and protects the seeds from predation by larvae of various bruchids. Arcelin is devoid of monosaccharide binding properties and lacks a key metal-binding loop that is present in other members of this family. Phytohaemagglutinin (PHA) is a lectin found in plants, especially beans, that affects cell metabolism by inducing mitosis and by altering the permeability of the cell membrane to various proteins. PHA agglutinates most mammalian red blood cell types by binding glycans on the cell surface. Medically, PHA is used as a mitogen to trigger cell division in T-lymphocytes and to activate latent HIV-1 from human peripheral lymphocytes. Plant L-type lectins are primarily found in the seeds of leguminous plants where they constitute about 10% of the total soluble protein of the seed extracts. They are synthesized during seed development several weeks after flowering and transported to the vacuole where they become condensed into specialized vesicles called protein bodies. L-type lectins have a dome-shaped beta-barrel carbohydrate recognition domain with a curved seven-stranded beta-sheet referred to as the "front face" and a flat six-stranded beta-sheet referred to as the "back face". This domain homodimerizes so that adjacent back sheets form a contiguous 12-stranded sheet and homotetramers occur by a back-to-back association of these homodimers. Though L-type lectins exhibit both sequence and structural similarity to one another, their carbohydrate binding specificities differ widely. Length = 236

>gnl|CDD|215744 pfam00139, Lectin_legB, Legume lectin domain Back     alignment and domain information
>gnl|CDD|173886 cd01951, lectin_L-type, legume lectins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 125
cd06899236 lectin_legume_LecRK_Arcelin_ConA legume lectins, l 99.93
PF00139236 Lectin_legB: Legume lectin domain; InterPro: IPR00 99.89
cd01951223 lectin_L-type legume lectins. The L-type (legume-t 99.74
cd07308218 lectin_leg-like legume-like lectins: ERGIC-53, ERG 98.41
cd06902225 lectin_ERGIC-53_ERGL ERGIC-53 and ERGL type 1 tran 98.1
cd06903215 lectin_EMP46_EMP47 EMP46 and EMP47 type 1 transmem 97.1
PF03388229 Lectin_leg-like: Legume-like lectin family; InterP 96.8
cd06901248 lectin_VIP36_VIPL VIP36 and VIPL type 1 transmembr 96.64
KOG3838 497 consensus Mannose lectin ERGIC-53, involved in gly 95.72
KOG3839351 consensus Lectin VIP36, involved in the transport 91.28
cd06900255 lectin_VcfQ VcfQ bacterial pilus biogenesis protei 89.44
>cd06899 lectin_legume_LecRK_Arcelin_ConA legume lectins, lectin-like receptor kinases, arcelin, concanavalinA, and alpha-amylase inhibitor Back     alignment and domain information
Probab=99.93  E-value=1.5e-25  Score=173.53  Aligned_cols=96  Identities=43%  Similarity=0.670  Sum_probs=87.1

Q ss_pred             CccCCccccceeecCcccCCCCccceeecCCCcEEEEEEEcCCCCEEEEEEEeCCCCCCCCceeeeeecCCccCCCeeeE
Q 047244            1 ILISSLIPSASEPAYYYSRNNHRIPILLRSGDPIRAWVDYSSQEMLIKVSKSPLGVPKPRRPLISFPIDLSLVLDEYMYR   80 (125)
Q Consensus         1 IdiNsv~S~~t~~~~~~~~~~~~~~~~l~~G~~~~awI~Yd~~~~~L~V~l~~~~~~~p~~p~ls~~vdLs~~L~e~v~V   80 (125)
                      ||||++.|..+..+..       ..+.|.+|+.++|||+||+.+++|+|+|...+..+|..|+|+..+||+++|+++|||
T Consensus       140 Idvn~~~S~~~~~~~~-------~~~~l~~g~~~~v~I~Y~~~~~~L~V~l~~~~~~~~~~~~ls~~vdL~~~l~~~~~v  212 (236)
T cd06899         140 IDVNSLVSVKAGYWDD-------DGGKLKSGKPMQAWIDYDSSSKRLSVTLAYSGVAKPKKPLLSYPVDLSKVLPEEVYV  212 (236)
T ss_pred             EEcCCcccceeecccc-------ccccccCCCeEEEEEEEcCCCCEEEEEEEeCCCCCCcCCEEEEeccHHHhCCCceEE
Confidence            6899998888877652       245578999999999999999999999998876688899999999999999999999


Q ss_pred             EEEeecCCceeeeEEEeEEEEeC
Q 047244           81 GFSASTGLITASHNVHGWSISIG  103 (125)
Q Consensus        81 GFSAsTG~~~e~h~i~sWsF~~~  103 (125)
                      ||||+||...|.|+|++|+|+++
T Consensus       213 GFSasTG~~~~~h~i~sWsF~s~  235 (236)
T cd06899         213 GFSASTGLLTELHYILSWSFSSN  235 (236)
T ss_pred             EEEeEcCCCcceEEEEEEEEEcC
Confidence            99999999999999999999875



This alignment model includes the legume lectins (also known as agglutinins), the arcelin (also known as phytohemagglutinin-L) family of lectin-like defense proteins, the LecRK family of lectin-like receptor kinases, concanavalinA (ConA), and an alpha-amylase inhibitor. Arcelin is a major seed glycoprotein discovered in kidney beans (Phaseolus vulgaris) that has insecticidal properties and protects the seeds from predation by larvae of various bruchids. Arcelin is devoid of monosaccharide binding properties and lacks a key metal-binding loop that is present in other members of this family. Phytohaemagglutinin (PHA) is a lectin found in plants, especially beans, that affects cell metabolism by inducing mitosis and by altering the permeability of the cell membrane to various proteins. PHA agglutinates most mammalian red blood cell types by bindin

>PF00139 Lectin_legB: Legume lectin domain; InterPro: IPR001220 Legume lectins are one of the largest lectin families with more than 70 lectins reported Back     alignment and domain information
>cd01951 lectin_L-type legume lectins Back     alignment and domain information
>cd07308 lectin_leg-like legume-like lectins: ERGIC-53, ERGL, VIP36, VIPL, EMP46, and EMP47 Back     alignment and domain information
>cd06902 lectin_ERGIC-53_ERGL ERGIC-53 and ERGL type 1 transmembrane proteins, N-terminal lectin domain Back     alignment and domain information
>cd06903 lectin_EMP46_EMP47 EMP46 and EMP47 type 1 transmembrane proteins, N-terminal lectin domain Back     alignment and domain information
>PF03388 Lectin_leg-like: Legume-like lectin family; InterPro: IPR005052 Lectins are structurally diverse proteins that bind to specific carbohydrates Back     alignment and domain information
>cd06901 lectin_VIP36_VIPL VIP36 and VIPL type 1 transmembrane proteins, lectin domain Back     alignment and domain information
>KOG3838 consensus Mannose lectin ERGIC-53, involved in glycoprotein traffic [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG3839 consensus Lectin VIP36, involved in the transport of glycoproteins carrying high mannose-type glycans [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>cd06900 lectin_VcfQ VcfQ bacterial pilus biogenesis protein, lectin domain Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query125
1qmo_E133 Mannose binding lectin, FRIL; crosslink, hematopoi 4e-18
1hql_A257 Lectin; xenograft antigen, sugar BI protein; HET: 6e-17
1nls_A 237 Concanavalin A; lectin, agglutinin; 0.94A {Canaval 2e-16
3zyr_A261 Lectin; sugar binding protein, N-glycan; HET: NAG 2e-16
1v6i_A232 Agglutinin, PNA, galactose-binding lectin; open qu 2e-16
1avb_A226 Arcelin-1; lectin-like glycoprotein, plant defense 3e-16
2fmd_A240 Lectin, agglutinin, BMA; legume lectin, beta sandw 4e-16
1fny_A237 BARK lectin, BARK agglutinin I,polypeptide A; legu 2e-15
1fat_A252 Phytohemagglutinin-L; glycoprotein, plant defense 5e-15
1dhk_B223 Bean lectin-like inhibitor, porcine pancreatic alp 6e-15
1wbf_A242 Protein (agglutinin); lectin (agglutinin), legume 9e-15
2bqp_A234 Protein (PEA lectin); D-glucopyranose complex, sug 9e-15
1gzc_A239 Erythrina crista-galli lectin; carbohydrate, sugar 1e-14
1gsl_A243 Griffonia simplicifolia lectin 4; glycoprotein, ma 1e-14
1ioa_A240 Arcelin-5A, ARC5A; lectin-like proteins, plant def 2e-14
1sbf_A253 Soybean agglutinin; lectin; HET: NAG GAL; 2.43A {G 3e-14
1n47_A233 Isolectin B4; cancer antigen, vicia villosa lectin 4e-14
3ipv_A251 Lectin alpha chain; galactose binding, SEED lectin 5e-14
1g7y_A253 Stem/LEAF lectin DB58; jelly roll fold, sugar bind 6e-14
2eig_A234 Lectin; L-fucosyl, N-acetyl-D-glucosamine, SUG bin 2e-13
1fx5_A242 UEA-I, UE-I, anti-H(O) lectin I; legume lectin, HO 3e-13
1f9k_A238 Acidic lectin; legume lectin, glycosylated protein 4e-13
1dbn_A239 MAL, protein (leukoagglutinin); plant lectin, carb 8e-13
1qnw_A242 Chitin binding lectin, UEA-II; carbohydrate bindin 1e-12
2ltn_B52 PEA lectin, beta chain; 1.70A {Pisum sativum} SCOP 3e-09
1gv9_A260 P58/ergic-53; lectin, carbohydrate binding; 1.46A 7e-04
>1qmo_E Mannose binding lectin, FRIL; crosslink, hematopoietic progenitor, sugar complex; HET: MAN; 3.5A {Dolichos lab lab} SCOP: b.29.1.1 Length = 133 Back     alignment and structure
 Score = 73.6 bits (180), Expect = 4e-18
 Identities = 25/107 (23%), Positives = 42/107 (39%), Gaps = 9/107 (8%)

Query: 19  RNNHRIPILLRSGDPIRAWVDYSSQEMLIKVSKSPLGVPKPRRPLISFPIDLSLVLDEYM 78
           R+        ++G    A + Y+S    + V+         +   +S+ I+L  VL E++
Sbjct: 32  RSKVTAKWDWQNGKIATAHISYNSVSKRLSVT---SYYAGSKPATLSYDIELHTVLPEWV 88

Query: 79  YRGFSASTGLITASHNVHGWSISIGGGKAQDLNPTKVPTLEKKKKIS 125
             G SASTG     + VH WS +        L         + K I+
Sbjct: 89  RVGLSASTGQDKERNTVHSWSFT------SSLWTNVAKKENENKYIT 129


>1hql_A Lectin; xenograft antigen, sugar BI protein; HET: GLA MBG NAG; 2.20A {Griffonia simplicifolia} SCOP: b.29.1.1 PDB: 1gnz_A* Length = 257 Back     alignment and structure
>1nls_A Concanavalin A; lectin, agglutinin; 0.94A {Canavalia ensiformis} SCOP: b.29.1.1 PDB: 1bxh_A* 1apn_A 1ces_A 1cjp_A* 1c57_A 1cvn_A* 1con_A 1dq1_A 1dq2_A 1dq4_A 1dq5_A 1dq6_A 1enq_A 1enr_A 1ens_A 1gic_A* 1dq0_A 1hqw_A 1gkb_A* 1i3h_A ... Length = 237 Back     alignment and structure
>3zyr_A Lectin; sugar binding protein, N-glycan; HET: NAG BMA MAN GOL; 1.65A {Platypodium elegans} PDB: 3zvx_A* 1ukg_A* 1q8o_A* 1q8q_A* 1q8s_A* 1q8v_A* 1q8p_A* 2auy_A* 2gme_A 2gmm_A* 2gmp_A* 2gn3_A* 2gn7_A* 2gnb_A* 2gnd_A* 2gnm_A* 2gnt_A 2phf_A* 2phr_A* 2pht_A* ... Length = 261 Back     alignment and structure
>1v6i_A Agglutinin, PNA, galactose-binding lectin; open quaternary association, orthorhombic, carbohydrate specificity, protein crystallography; HET: GAL GLC; 2.15A {Arachis hypogaea} SCOP: b.29.1.1 PDB: 1bzw_A* 1v6j_A* 1v6k_A* 1v6l_A* 1v6m_A 1v6n_A 1v6o_A 2dva_A* 1cq9_A 1ciw_A* 1qf3_A* 1rir_A* 1rit_A* 2dh1_A 1cr7_A* 2dv9_A* 2dvb_A* 2dvd_A* 2dvf_A 2dvg_A* ... Length = 232 Back     alignment and structure
>1avb_A Arcelin-1; lectin-like glycoprotein, plant defense, insecticidal activi lectin; HET: NAG; 1.90A {Phaseolus vulgaris} SCOP: b.29.1.1 Length = 226 Back     alignment and structure
>2fmd_A Lectin, agglutinin, BMA; legume lectin, beta sandwich, protein-carbohydrate complex, sugar binding protein; HET: MAN; 1.90A {Bowringia mildbraedii} Length = 240 Back     alignment and structure
>1fny_A BARK lectin, BARK agglutinin I,polypeptide A; legume lectin, jelly roll, sugar binding protein; 1.81A {Robinia pseudoacacia} SCOP: b.29.1.1 PDB: 1fnz_A* Length = 237 Back     alignment and structure
>1fat_A Phytohemagglutinin-L; glycoprotein, plant defense protein, lectin; HET: NAG; 2.80A {Phaseolus vulgaris} SCOP: b.29.1.1 PDB: 1g8w_A* Length = 252 Back     alignment and structure
>1dhk_B Bean lectin-like inhibitor, porcine pancreatic alpha-amylase; CO (hydrolase-inhibitor), complex (hydrolase-inhibitor) comple; HET: NAG; 1.85A {Phaseolus vulgaris} SCOP: b.29.1.1 PDB: 1viw_B* Length = 223 Back     alignment and structure
>1wbf_A Protein (agglutinin); lectin (agglutinin), legume lectin, protein crystallography, group specificity, saccharide free form; HET: NAG; 2.30A {Psophocarpus tetragonolobus} SCOP: b.29.1.1 PDB: 2d3s_A* 2dtw_A* 1wbl_A* 2dty_A* 2du0_A* 2du1_A* 2e51_A* 2e53_A* 2zmk_A* 2zml_A* 2zmn_A* 2e7t_A* 2e7q_A* Length = 242 Back     alignment and structure
>2bqp_A Protein (PEA lectin); D-glucopyranose complex, sugar binding protein; HET: GLC; 1.90A {Pisum sativum} SCOP: b.29.1.1 Length = 234 Back     alignment and structure
>1gzc_A Erythrina crista-galli lectin; carbohydrate, sugar binding protein, saccharide, protein-carbohydrate interactions, lactose, glycoprotein; HET: LAT; 1.58A {Erythrina crista-galli} SCOP: b.29.1.1 PDB: 1gz9_A* 1fyu_A* 1ax0_A* 1ax1_A* 1ax2_A* 1axy_A* 1axz_A* 1lte_A* 1sfy_A* 1v00_A* 1uzz_A 1uzy_A* 3n35_A* 3n36_A* 3n3h_A* Length = 239 Back     alignment and structure
>1gsl_A Griffonia simplicifolia lectin 4; glycoprotein, manganese; HET: FUC GAL MAG NAG BMA; 2.00A {Griffonia simplicifolia} SCOP: b.29.1.1 PDB: 1lec_A* 1led_A* Length = 243 Back     alignment and structure
>1ioa_A Arcelin-5A, ARC5A; lectin-like proteins, plant defense proteins, lectin; HET: NAG FUC; 2.70A {Phaseolus vulgaris} SCOP: b.29.1.1 Length = 240 Back     alignment and structure
>1sbf_A Soybean agglutinin; lectin; HET: NAG GAL; 2.43A {Glycine max} SCOP: b.29.1.1 PDB: 1sbd_A* 1sbe_A* 1g9f_A* 2sba_A* Length = 253 Back     alignment and structure
>1n47_A Isolectin B4; cancer antigen, vicia villosa lectin, glycoprotein TN-bindin protein, carbohydrate recognition, sugar binding protein; HET: NAG FUC TNR; 2.70A {Vicia villosa} SCOP: b.29.1.1 Length = 233 Back     alignment and structure
>3ipv_A Lectin alpha chain; galactose binding, SEED lectin, hemagglutinin, legume lectin fungal, sugar binding protein; 2.04A {Spatholobus parviflorus} PDB: 3ipv_B 3usu_B* 3usu_A* Length = 251 Back     alignment and structure
>1g7y_A Stem/LEAF lectin DB58; jelly roll fold, sugar binding protein; HET: NAG FUC FUL; 2.50A {Vigna unguiculata subsp} SCOP: b.29.1.1 PDB: 1lul_A 1lu1_A* 1bjq_A* 1lu2_A* Length = 253 Back     alignment and structure
>2eig_A Lectin; L-fucosyl, N-acetyl-D-glucosamine, SUG binding protein; HET: NAG; 2.00A {Lotus tetragonolobus} Length = 234 Back     alignment and structure
>1fx5_A UEA-I, UE-I, anti-H(O) lectin I; legume lectin, HOMO-dimer, fucose specific lectin, SUG binding protein; HET: NAG FUC BMA MAN; 2.20A {Ulex europaeus} SCOP: b.29.1.1 PDB: 1jxn_A* Length = 242 Back     alignment and structure
>1f9k_A Acidic lectin; legume lectin, glycosylated protein, H-antigenic specificity agglutinin, sugar binding protein; HET: NAG MAN AMG; 3.00A {Psophocarpus tetragonolobus} SCOP: b.29.1.1 PDB: 1fay_A* Length = 238 Back     alignment and structure
>1dbn_A MAL, protein (leukoagglutinin); plant lectin, carbohydrate binding, sialyllactose, sugar BIN protein; HET: NAG SIA GAL BGC; 2.75A {Maackia amurensis} SCOP: b.29.1.1 Length = 239 Back     alignment and structure
>1qnw_A Chitin binding lectin, UEA-II; carbohydrate binding; HET: NAG; 2.35A {Ulex europaeus} SCOP: b.29.1.1 PDB: 1dzq_A* 1qoo_A* 1qos_A* 1qot_A* Length = 242 Back     alignment and structure
>2ltn_B PEA lectin, beta chain; 1.70A {Pisum sativum} SCOP: b.29.1.1 PDB: 1hkd_B 1rin_B* 1ofs_B* 1bqp_B* 1loe_B 1loa_B* 1loc_B* 1lod_B* 1lob_B 1lof_B* 1log_B* 1lof_D* 1les_B* 2b7y_B* 1lgc_B* 1lgb_B* 1len_B 1lem_B 2lal_B Length = 52 Back     alignment and structure
>1gv9_A P58/ergic-53; lectin, carbohydrate binding; 1.46A {Rattus norvegicus} SCOP: b.29.1.13 PDB: 1r1z_A 3a4u_A 3lcp_A Length = 260 Back     alignment and structure

Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query125
1qmo_E133 Mannose binding lectin, FRIL; crosslink, hematopoi 99.97
1hql_A257 Lectin; xenograft antigen, sugar BI protein; HET: 99.96
3ipv_A251 Lectin alpha chain; galactose binding, SEED lectin 99.95
1nls_A 237 Concanavalin A; lectin, agglutinin; 0.94A {Canaval 99.95
3ujo_A281 Legume lectin; carbohydrate-binding, galactose, ad 99.95
3zyr_A261 Lectin; sugar binding protein, N-glycan; HET: NAG 99.95
1ioa_A240 Arcelin-5A, ARC5A; lectin-like proteins, plant def 99.94
1avb_A226 Arcelin-1; lectin-like glycoprotein, plant defense 99.94
1dhk_B223 Bean lectin-like inhibitor, porcine pancreatic alp 99.94
2bqp_A234 Protein (PEA lectin); D-glucopyranose complex, sug 99.94
1dbn_A239 MAL, protein (leukoagglutinin); plant lectin, carb 99.94
1fny_A237 BARK lectin, BARK agglutinin I,polypeptide A; legu 99.94
2eig_A234 Lectin; L-fucosyl, N-acetyl-D-glucosamine, SUG bin 99.94
1fx5_A242 UEA-I, UE-I, anti-H(O) lectin I; legume lectin, HO 99.94
1gzc_A239 Erythrina crista-galli lectin; carbohydrate, sugar 99.94
1qnw_A242 Chitin binding lectin, UEA-II; carbohydrate bindin 99.94
1n47_A233 Isolectin B4; cancer antigen, vicia villosa lectin 99.94
1sbf_A253 Soybean agglutinin; lectin; HET: NAG GAL; 2.43A {G 99.94
1g7y_A253 Stem/LEAF lectin DB58; jelly roll fold, sugar bind 99.93
1f9k_A238 Acidic lectin; legume lectin, glycosylated protein 99.93
1wbf_A242 Protein (agglutinin); lectin (agglutinin), legume 99.93
1fat_A252 Phytohemagglutinin-L; glycoprotein, plant defense 99.93
1v6i_A232 Agglutinin, PNA, galactose-binding lectin; open qu 99.93
2fmd_A240 Lectin, agglutinin, BMA; legume lectin, beta sandw 99.93
1gsl_A243 Griffonia simplicifolia lectin 4; glycoprotein, ma 99.93
2ltn_B52 PEA lectin, beta chain; 1.70A {Pisum sativum} SCOP 99.74
1gv9_A260 P58/ergic-53; lectin, carbohydrate binding; 1.46A 99.66
2dur_A253 VIP36;, vesicular integral-membrane protein VIP36; 99.64
2a6y_A256 EMP47P (FORM1); beta sandwich, carbohydrate bindin 99.23
2ltn_A181 PEA lectin, alpha chain; 1.70A {Pisum sativum} SCO 98.96
2a6z_A222 EMP47P (FORM2); beta sandwich, carbohydrate bindin 98.18
2a6v_A226 EMP46P; beta sandwich, carbohydrate binding protei 96.99
>1qmo_E Mannose binding lectin, FRIL; crosslink, hematopoietic progenitor, sugar complex; HET: MAN; 3.5A {Dolichos lab lab} SCOP: b.29.1.1 Back     alignment and structure
Probab=99.97  E-value=3.7e-30  Score=184.15  Aligned_cols=89  Identities=28%  Similarity=0.375  Sum_probs=82.2

Q ss_pred             CccCCccccceeecCcccCCCCccceeecCCCcEEEEEEEcCCCCEEEEEEEeCCCCCCCCceeeeeecCCccCCCeeeE
Q 047244            1 ILISSLIPSASEPAYYYSRNNHRIPILLRSGDPIRAWVDYSSQEMLIKVSKSPLGVPKPRRPLISFPIDLSLVLDEYMYR   80 (125)
Q Consensus         1 IdiNsv~S~~t~~~~~~~~~~~~~~~~l~~G~~~~awI~Yd~~~~~L~V~l~~~~~~~p~~p~ls~~vdLs~~L~e~v~V   80 (125)
                      |||||+.|.++.+|            ++.+|+.++|||+||+.+++|+|+|++.+. +  +|+|+..+||+++|+|+|||
T Consensus        26 IdvNsi~S~~s~~~------------~l~sG~~~~v~I~Yd~~~~~L~V~l~~~~~-~--~p~ls~~vdLs~~l~e~v~V   90 (133)
T 1qmo_E           26 IDVNSIRSKVTAKW------------DWQNGKIATAHISYNSVSKRLSVTSYYAGS-K--PATLSYDIELHTVLPEWVRV   90 (133)
T ss_dssp             EEESSSSCSEEEEC------------CCCTTSCEEEEEEEETTTTEEEEEEECSSS-C--CEEEEEECCGGGTSCSEEEE
T ss_pred             Eecccccccceeee------------EEcCCCEEEEEEEEeCCCcEEEEEEccCCC-c--cceEEEeechHHhccccEEE
Confidence            79999999999875            367999999999999999999999998754 2  79999999999999999999


Q ss_pred             EEEeecCCceeeeEEEeEEEEeCC
Q 047244           81 GFSASTGLITASHNVHGWSISIGG  104 (125)
Q Consensus        81 GFSAsTG~~~e~h~i~sWsF~~~~  104 (125)
                      ||||+||...|.|+|++|+|++++
T Consensus        91 GFSAsTG~~~~~h~IlsWsF~s~l  114 (133)
T 1qmo_E           91 GLSASTGQDKERNTVHSWSFTSSL  114 (133)
T ss_dssp             EEEEECSSSCCEEEEEEEEEEEEE
T ss_pred             EEEeccCCCcceeEEEEEEEEeeC
Confidence            999999999999999999999876



>1hql_A Lectin; xenograft antigen, sugar BI protein; HET: GLA MBG NAG; 2.20A {Griffonia simplicifolia} SCOP: b.29.1.1 PDB: 1gnz_A* Back     alignment and structure
>3ipv_A Lectin alpha chain; galactose binding, SEED lectin, hemagglutinin, legume lectin fungal, sugar binding protein; 2.04A {Spatholobus parviflorus} PDB: 3ipv_B 3usu_B* 3usu_A* Back     alignment and structure
>1nls_A Concanavalin A; lectin, agglutinin; 0.94A {Canavalia ensiformis} SCOP: b.29.1.1 PDB: 1bxh_A* 1apn_A 1ces_A 1cjp_A* 1c57_A 1cvn_A* 1con_A 1dq1_A 1dq2_A 1dq4_A 1dq5_A 1dq6_A 1enq_A 1enr_A 1ens_A 1gic_A* 1dq0_A 1hqw_A 1gkb_A* 1i3h_A ... Back     alignment and structure
>3ujo_A Legume lectin; carbohydrate-binding, galactose, adenine binding protein; HET: ADE GAL; 2.00A {Dolichos lablab} PDB: 3ujq_A* 3uk9_A* 3ul2_A* 1fat_A* 1g8w_A* Back     alignment and structure
>3zyr_A Lectin; sugar binding protein, N-glycan; HET: NAG BMA MAN GOL; 1.65A {Platypodium elegans} SCOP: b.29.1.1 PDB: 3zvx_A* 1ukg_A* 1q8o_A* 1q8q_A* 1q8s_A* 1q8v_A* 1q8p_A* 2auy_A* 2gme_A 2gmm_A* 2gmp_A* 2gn3_A* 2gn7_A* 2gnb_A* 2gnd_A* 2gnm_A* 2gnt_A 2phf_A* 2phr_A* 2pht_A* ... Back     alignment and structure
>1ioa_A Arcelin-5A, ARC5A; lectin-like proteins, plant defense proteins, lectin; HET: NAG FUC; 2.70A {Phaseolus vulgaris} SCOP: b.29.1.1 Back     alignment and structure
>1avb_A Arcelin-1; lectin-like glycoprotein, plant defense, insecticidal activi lectin; HET: NAG; 1.90A {Phaseolus vulgaris} SCOP: b.29.1.1 Back     alignment and structure
>1dhk_B Bean lectin-like inhibitor, porcine pancreatic alpha-amylase; CO (hydrolase-inhibitor), complex (hydrolase-inhibitor) comple; HET: NAG; 1.85A {Phaseolus vulgaris} SCOP: b.29.1.1 PDB: 1viw_B* Back     alignment and structure
>2bqp_A Protein (PEA lectin); D-glucopyranose complex, sugar binding protein; HET: GLC; 1.90A {Pisum sativum} SCOP: b.29.1.1 Back     alignment and structure
>1dbn_A MAL, protein (leukoagglutinin); plant lectin, carbohydrate binding, sialyllactose, sugar BIN protein; HET: NAG SIA GAL BGC; 2.75A {Maackia amurensis} SCOP: b.29.1.1 Back     alignment and structure
>1fny_A BARK lectin, BARK agglutinin I,polypeptide A; legume lectin, jelly roll, sugar binding protein; 1.81A {Robinia pseudoacacia} SCOP: b.29.1.1 PDB: 1fnz_A* Back     alignment and structure
>2eig_A Lectin; L-fucosyl, N-acetyl-D-glucosamine, SUG binding protein; HET: NAG; 2.00A {Lotus tetragonolobus} Back     alignment and structure
>1fx5_A UEA-I, UE-I, anti-H(O) lectin I; legume lectin, HOMO-dimer, fucose specific lectin, SUG binding protein; HET: NAG FUC BMA MAN; 2.20A {Ulex europaeus} SCOP: b.29.1.1 PDB: 1jxn_A* Back     alignment and structure
>1gzc_A Erythrina crista-galli lectin; carbohydrate, sugar binding protein, saccharide, protein-carbohydrate interactions, lactose, glycoprotein; HET: LAT; 1.58A {Erythrina crista-galli} SCOP: b.29.1.1 PDB: 1gz9_A* 1fyu_A* 1ax0_A* 1ax1_A* 1ax2_A* 1axy_A* 1axz_A* 1lte_A* 1sfy_A* 1v00_A* 1uzz_A 1uzy_A* 3n35_A* 3n36_A* 3n3h_A* Back     alignment and structure
>1qnw_A Chitin binding lectin, UEA-II; carbohydrate binding; HET: NAG; 2.35A {Ulex europaeus} SCOP: b.29.1.1 PDB: 1dzq_A* 1qoo_A* 1qos_A* 1qot_A* Back     alignment and structure
>1n47_A Isolectin B4; cancer antigen, vicia villosa lectin, glycoprotein TN-bindin protein, carbohydrate recognition, sugar binding protein; HET: NAG FUC TNR; 2.70A {Vicia villosa} SCOP: b.29.1.1 Back     alignment and structure
>1sbf_A Soybean agglutinin; lectin; HET: NAG GAL; 2.43A {Glycine max} SCOP: b.29.1.1 PDB: 1sbd_A* 1sbe_A* 1g9f_A* 2sba_A* Back     alignment and structure
>1g7y_A Stem/LEAF lectin DB58; jelly roll fold, sugar binding protein; HET: NAG FUC FUL; 2.50A {Vigna unguiculata subsp} SCOP: b.29.1.1 PDB: 1lul_A 1lu1_A* 1bjq_A* 1lu2_A* Back     alignment and structure
>1f9k_A Acidic lectin; legume lectin, glycosylated protein, H-antigenic specificity agglutinin, sugar binding protein; HET: NAG MAN AMG; 3.00A {Psophocarpus tetragonolobus} SCOP: b.29.1.1 PDB: 1fay_A* Back     alignment and structure
>1wbf_A Protein (agglutinin); lectin (agglutinin), legume lectin, protein crystallography, group specificity, saccharide free form; HET: NAG; 2.30A {Psophocarpus tetragonolobus} SCOP: b.29.1.1 PDB: 2d3s_A* 2dtw_A* 1wbl_A* 2dty_A* 2du0_A* 2du1_A* 2e51_A* 2e53_A* 2zmk_A* 2zml_A* 2zmn_A* 2e7t_A* 2e7q_A* Back     alignment and structure
>1fat_A Phytohemagglutinin-L; glycoprotein, plant defense protein, lectin; HET: NAG; 2.80A {Phaseolus vulgaris} SCOP: b.29.1.1 PDB: 1g8w_A* Back     alignment and structure
>1v6i_A Agglutinin, PNA, galactose-binding lectin; open quaternary association, orthorhombic, carbohydrate specificity, protein crystallography; HET: GAL GLC; 2.15A {Arachis hypogaea} SCOP: b.29.1.1 PDB: 1bzw_A* 1v6j_A* 1v6k_A* 1v6l_A* 1v6m_A 1v6n_A 1v6o_A 2dva_A* 1cq9_A 1ciw_A* 1qf3_A* 1rir_A* 1rit_A* 2dh1_A 1cr7_A* 2dv9_A* 2dvb_A* 2dvd_A* 2dvf_A 2dvg_A* ... Back     alignment and structure
>2fmd_A Lectin, agglutinin, BMA; legume lectin, beta sandwich, protein-carbohydrate complex, sugar binding protein; HET: MAN; 1.90A {Bowringia mildbraedii} Back     alignment and structure
>1gsl_A Griffonia simplicifolia lectin 4; glycoprotein, manganese; HET: FUC GAL MAG NAG BMA; 2.00A {Griffonia simplicifolia} SCOP: b.29.1.1 PDB: 1lec_A* 1led_A* Back     alignment and structure
>2ltn_B PEA lectin, beta chain; 1.70A {Pisum sativum} SCOP: b.29.1.1 PDB: 1hkd_B 1rin_B* 1ofs_B* 1bqp_B* 1loe_B 1loa_B* 1loc_B* 1lod_B* 1lob_B 1lof_B* 1log_B* 1lof_D* 1les_B* 2b7y_B* 1lgc_B* 1lgb_B* 1len_B 1lem_B 2lal_B Back     alignment and structure
>1gv9_A P58/ergic-53; lectin, carbohydrate binding; 1.46A {Rattus norvegicus} SCOP: b.29.1.13 PDB: 1r1z_A 3a4u_A 3lcp_A Back     alignment and structure
>2dur_A VIP36;, vesicular integral-membrane protein VIP36; beta sandwich, carbohydrate binding protein, cargo receptor, transport; HET: MAN; 1.65A {Canis lupus familiaris} PDB: 2dup_A 2duq_A* 2duo_A* 2e6v_A* Back     alignment and structure
>2a6y_A EMP47P (FORM1); beta sandwich, carbohydrate binding protein, cargo receptor, structural genomics, NPPSFA; 1.42A {Saccharomyces cerevisiae} SCOP: b.29.1.13 Back     alignment and structure
>2ltn_A PEA lectin, alpha chain; 1.70A {Pisum sativum} SCOP: b.29.1.1 PDB: 1bqp_A* 1hkd_A 1ofs_A* 1rin_A* 1lof_C* 1len_A 1lem_A 1les_A* 2lal_A 1loe_A 1loa_A* 1loc_A* 1lod_A* 1lob_A 1lof_A* 1log_A* 1lgc_A* 1lgb_A* 2b7y_A* Back     alignment and structure
>2a6z_A EMP47P (FORM2); beta sandwich, carbohydrate binding protein, cargo receptor, structural genomics, NPPSFA; 1.00A {Saccharomyces cerevisiae} SCOP: b.29.1.13 PDB: 2a70_A 2a71_A Back     alignment and structure
>2a6v_A EMP46P; beta sandwich, carbohydrate binding protein, cargo receptor, structural genomics, NPPSFA; 1.52A {Saccharomyces cerevisiae} SCOP: b.29.1.13 PDB: 2a6w_A 2a6x_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 125
d1ukga_241 b.29.1.1 (A:) Legume lectin {Bloodwood tree (Ptero 1e-19
g1qmo.1230 b.29.1.1 (A:,E:) Legume lectin {Field bean (Dolich 1e-18
d1hqla_236 b.29.1.1 (A:) Legume lectin {Griffonia simplicifol 1e-18
d1nlsa_ 237 b.29.1.1 (A:) Concanavalin A {Jack bean (Canavalia 2e-18
d1qnwa_237 b.29.1.1 (A:) Legume lectin {Furze (Ulex europaeus 5e-18
d1f9ka_234 b.29.1.1 (A:) Legume lectin {Winged bean (Psophoca 2e-17
d1gzca_239 b.29.1.1 (A:) Legume lectin {Cockspur coral tree ( 2e-17
d2d3sa1237 b.29.1.1 (A:1-237) Legume lectin {Winged bean (Pso 2e-17
g2ltn.1229 b.29.1.1 (A:,B:) Legume lectin {Garden pea (Pisum 4e-17
d1leda_243 b.29.1.1 (A:) Legume lectin {West-central african 5e-17
d1avba_226 b.29.1.1 (A:) Phytohemagglutinin-L, PHA-L, also ar 7e-17
d1g7ya_253 b.29.1.1 (A:) Legume lectin {Horse gram (Dolichos 8e-17
d1g9fa_251 b.29.1.1 (A:) Legume lectin {Soybean (Glycine max) 1e-16
d1v6ia_232 b.29.1.1 (A:) Legume lectin {Peanut (Arachis hypog 1e-16
d1ioaa_228 b.29.1.1 (A:) Phytohemagglutinin-L, PHA-L, also ar 1e-16
d1n47a_233 b.29.1.1 (A:) Legume lectin {Hairy vetch (Vicia vi 2e-16
d1dbna_239 b.29.1.1 (A:) Legume lectin {Maackia amurensis, le 6e-16
d1fx5a_240 b.29.1.1 (A:) Legume lectin {Furze (Ulex europaeus 1e-15
d1g8wa_233 b.29.1.1 (A:) Phytohemagglutinin-L, PHA-L, also ar 2e-15
d1dhkb_204 b.29.1.1 (B:) Phytohemagglutinin-L, PHA-L, also ar 5e-15
d1fnya_237 b.29.1.1 (A:) Legume lectin {Black locust (Robinia 7e-15
d1gv9a_228 b.29.1.13 (A:) Carbohydrate-recognition domain of 2e-09
>d1ukga_ b.29.1.1 (A:) Legume lectin {Bloodwood tree (Pterocarpus angolensis) [TaxId: 182271]} Length = 241 Back     information, alignment and structure

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Legume lectins
domain: Legume lectin
species: Bloodwood tree (Pterocarpus angolensis) [TaxId: 182271]
 Score = 78.7 bits (193), Expect = 1e-19
 Identities = 19/83 (22%), Positives = 36/83 (43%), Gaps = 3/83 (3%)

Query: 19  RNNHRIPILLRSGDPIRAWVDYSSQEMLIKVSKSPLGVPKPRRPLISFPIDLSLVLDEYM 78
           R+   +    R G  +   V ++     + V           R  +S+ +D+  VL E++
Sbjct: 155 RSVKTVKWDRRDGQSLNVLVTFNPSTRNLDVV---ATYSDGTRYEVSYEVDVRSVLPEWV 211

Query: 79  YRGFSASTGLITASHNVHGWSIS 101
             GFSA++G    +H +  WS +
Sbjct: 212 RVGFSAASGEQYQTHTLESWSFT 234


>d1hqla_ b.29.1.1 (A:) Legume lectin {Griffonia simplicifolia, lectin I-b4 [TaxId: 3850]} Length = 236 Back     information, alignment and structure
>d1nlsa_ b.29.1.1 (A:) Concanavalin A {Jack bean (Canavalia ensiformis) [TaxId: 3823]} Length = 237 Back     information, alignment and structure
>d1qnwa_ b.29.1.1 (A:) Legume lectin {Furze (Ulex europaeus), UEA-II [TaxId: 3902]} Length = 237 Back     information, alignment and structure
>d1f9ka_ b.29.1.1 (A:) Legume lectin {Winged bean (Psophocarpus tetragonolobus), acidic lectin [TaxId: 3891]} Length = 234 Back     information, alignment and structure
>d1gzca_ b.29.1.1 (A:) Legume lectin {Cockspur coral tree (Erythrina crista-galli) [TaxId: 49817]} Length = 239 Back     information, alignment and structure
>d2d3sa1 b.29.1.1 (A:1-237) Legume lectin {Winged bean (Psophocarpus tetragonolobus), basic agglutinin [TaxId: 3891]} Length = 237 Back     information, alignment and structure
>d1leda_ b.29.1.1 (A:) Legume lectin {West-central african legume (Griffonia simplicifolia) [TaxId: 3850]} Length = 243 Back     information, alignment and structure
>d1avba_ b.29.1.1 (A:) Phytohemagglutinin-L, PHA-L, also arcelin {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 226 Back     information, alignment and structure
>d1g7ya_ b.29.1.1 (A:) Legume lectin {Horse gram (Dolichos biflorus), different isoforms [TaxId: 3840]} Length = 253 Back     information, alignment and structure
>d1g9fa_ b.29.1.1 (A:) Legume lectin {Soybean (Glycine max) [TaxId: 3847]} Length = 251 Back     information, alignment and structure
>d1v6ia_ b.29.1.1 (A:) Legume lectin {Peanut (Arachis hypogaea) [TaxId: 3818]} Length = 232 Back     information, alignment and structure
>d1ioaa_ b.29.1.1 (A:) Phytohemagglutinin-L, PHA-L, also arcelin {Kidney bean (Phaseolus vulgaris), G02771, arcelin-5a [TaxId: 3885]} Length = 228 Back     information, alignment and structure
>d1n47a_ b.29.1.1 (A:) Legume lectin {Hairy vetch (Vicia villosa), isolectin b4 [TaxId: 3911]} Length = 233 Back     information, alignment and structure
>d1dbna_ b.29.1.1 (A:) Legume lectin {Maackia amurensis, leukoagglutinin [TaxId: 37501]} Length = 239 Back     information, alignment and structure
>d1fx5a_ b.29.1.1 (A:) Legume lectin {Furze (Ulex europaeus), UEA-I [TaxId: 3902]} Length = 240 Back     information, alignment and structure
>d1g8wa_ b.29.1.1 (A:) Phytohemagglutinin-L, PHA-L, also arcelin {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 233 Back     information, alignment and structure
>d1dhkb_ b.29.1.1 (B:) Phytohemagglutinin-L, PHA-L, also arcelin {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 204 Back     information, alignment and structure
>d1fnya_ b.29.1.1 (A:) Legume lectin {Black locust (Robinia pseudoacacia) [TaxId: 35938]} Length = 237 Back     information, alignment and structure
>d1gv9a_ b.29.1.13 (A:) Carbohydrate-recognition domain of P58/ERGIC-53 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 228 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query125
d1hqla_236 Legume lectin {Griffonia simplicifolia, lectin I-b 99.93
d1qnwa_237 Legume lectin {Furze (Ulex europaeus), UEA-II [Tax 99.92
d1gzca_239 Legume lectin {Cockspur coral tree (Erythrina cris 99.92
d1leda_243 Legume lectin {West-central african legume (Griffo 99.92
d1nlsa_ 237 Concanavalin A {Jack bean (Canavalia ensiformis) [ 99.92
d1g9fa_251 Legume lectin {Soybean (Glycine max) [TaxId: 3847] 99.92
d2d3sa1237 Legume lectin {Winged bean (Psophocarpus tetragono 99.91
d1fx5a_240 Legume lectin {Furze (Ulex europaeus), UEA-I [TaxI 99.91
d1f9ka_234 Legume lectin {Winged bean (Psophocarpus tetragono 99.91
d1ukga_241 Legume lectin {Bloodwood tree (Pterocarpus angolen 99.91
d1g7ya_253 Legume lectin {Horse gram (Dolichos biflorus), dif 99.9
d1n47a_233 Legume lectin {Hairy vetch (Vicia villosa), isolec 99.9
d1ioaa_228 Phytohemagglutinin-L, PHA-L, also arcelin {Kidney 99.89
g1qmo.1230 Legume lectin {Field bean (Dolichos lablab), Fril 99.89
d1dhkb_204 Phytohemagglutinin-L, PHA-L, also arcelin {Kidney 99.88
d1fnya_237 Legume lectin {Black locust (Robinia pseudoacacia) 99.88
d1v6ia_232 Legume lectin {Peanut (Arachis hypogaea) [TaxId: 3 99.88
d1g8wa_233 Phytohemagglutinin-L, PHA-L, also arcelin {Kidney 99.88
d1dbna_239 Legume lectin {Maackia amurensis, leukoagglutinin 99.87
d1avba_226 Phytohemagglutinin-L, PHA-L, also arcelin {Kidney 99.87
g2ltn.1229 Legume lectin {Garden pea (Pisum sativum) [TaxId: 99.84
d1gv9a_228 Carbohydrate-recognition domain of P58/ERGIC-53 {R 99.09
d2a6va1218 Emp46p N-terminal domain {Baker's yeast (Saccharom 98.17
d2a6za1221 Emp47p N-terminal domain {Baker's yeast (Saccharom 97.81
>d1hqla_ b.29.1.1 (A:) Legume lectin {Griffonia simplicifolia, lectin I-b4 [TaxId: 3850]} Back     information, alignment and structure
class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Legume lectins
domain: Legume lectin
species: Griffonia simplicifolia, lectin I-b4 [TaxId: 3850]
Probab=99.93  E-value=1.2e-26  Score=177.10  Aligned_cols=92  Identities=23%  Similarity=0.225  Sum_probs=82.6

Q ss_pred             CccCCccccceeecCcccCCCCccceeecCCCcEEEEEEEcCCCCEEEEEEEeCCCCCCCCceeeeeecCCccCCCeeeE
Q 047244            1 ILISSLIPSASEPAYYYSRNNHRIPILLRSGDPIRAWVDYSSQEMLIKVSKSPLGVPKPRRPLISFPIDLSLVLDEYMYR   80 (125)
Q Consensus         1 IdiNsv~S~~t~~~~~~~~~~~~~~~~l~~G~~~~awI~Yd~~~~~L~V~l~~~~~~~p~~p~ls~~vdLs~~L~e~v~V   80 (125)
                      ||||+++|.++.++.         ..++.+|+.++|||+||+.+|+|+|+|++.   +|..|+|++.|||+++|+|+|||
T Consensus       144 Idvns~~s~~~~~~~---------~~~l~~G~~~~v~I~Yd~~~~~L~V~l~~~---~~~~~~ls~~vdL~~~l~~~v~v  211 (236)
T d1hqla_         144 INVNSIVSVATKRWE---------DSDIFSGKIATARISYDGSAEILTVVLSYP---DGSDYILSHSVDMRQNLPESVRV  211 (236)
T ss_dssp             EEESSSSCSEEEECC---------HHHHTSCSCEEEEEEEETTTTEEEEEEEET---TTEEEEEEEECCGGGTSCSEEEE
T ss_pred             EEcCCcccccccccc---------cccccCCCEEEEEEEEeCCCcEEEEEEecC---CCCCeeEEEEeCHHHhCCCcEEE
Confidence            689999999888764         457899999999999999999999999975   46678999999999999999999


Q ss_pred             EEEeecCCc-eeeeEEEeEEEEeCC
Q 047244           81 GFSASTGLI-TASHNVHGWSISIGG  104 (125)
Q Consensus        81 GFSAsTG~~-~e~h~i~sWsF~~~~  104 (125)
                      |||||||.. .+.|+|++|+|++++
T Consensus       212 GFSasTG~~~~~~h~I~sWsF~s~l  236 (236)
T d1hqla_         212 GISASTGNNQFLTVYILSWRFSSNL  236 (236)
T ss_dssp             EEEEECCSCCCEEEEEEEEEEEEEC
T ss_pred             EEEeECCCCCceEEEEEEeEeEecC
Confidence            999999975 688999999999753



>d1qnwa_ b.29.1.1 (A:) Legume lectin {Furze (Ulex europaeus), UEA-II [TaxId: 3902]} Back     information, alignment and structure
>d1gzca_ b.29.1.1 (A:) Legume lectin {Cockspur coral tree (Erythrina crista-galli) [TaxId: 49817]} Back     information, alignment and structure
>d1leda_ b.29.1.1 (A:) Legume lectin {West-central african legume (Griffonia simplicifolia) [TaxId: 3850]} Back     information, alignment and structure
>d1nlsa_ b.29.1.1 (A:) Concanavalin A {Jack bean (Canavalia ensiformis) [TaxId: 3823]} Back     information, alignment and structure
>d1g9fa_ b.29.1.1 (A:) Legume lectin {Soybean (Glycine max) [TaxId: 3847]} Back     information, alignment and structure
>d2d3sa1 b.29.1.1 (A:1-237) Legume lectin {Winged bean (Psophocarpus tetragonolobus), basic agglutinin [TaxId: 3891]} Back     information, alignment and structure
>d1fx5a_ b.29.1.1 (A:) Legume lectin {Furze (Ulex europaeus), UEA-I [TaxId: 3902]} Back     information, alignment and structure
>d1f9ka_ b.29.1.1 (A:) Legume lectin {Winged bean (Psophocarpus tetragonolobus), acidic lectin [TaxId: 3891]} Back     information, alignment and structure
>d1ukga_ b.29.1.1 (A:) Legume lectin {Bloodwood tree (Pterocarpus angolensis) [TaxId: 182271]} Back     information, alignment and structure
>d1g7ya_ b.29.1.1 (A:) Legume lectin {Horse gram (Dolichos biflorus), different isoforms [TaxId: 3840]} Back     information, alignment and structure
>d1n47a_ b.29.1.1 (A:) Legume lectin {Hairy vetch (Vicia villosa), isolectin b4 [TaxId: 3911]} Back     information, alignment and structure
>d1ioaa_ b.29.1.1 (A:) Phytohemagglutinin-L, PHA-L, also arcelin {Kidney bean (Phaseolus vulgaris), G02771, arcelin-5a [TaxId: 3885]} Back     information, alignment and structure
>d1dhkb_ b.29.1.1 (B:) Phytohemagglutinin-L, PHA-L, also arcelin {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Back     information, alignment and structure
>d1fnya_ b.29.1.1 (A:) Legume lectin {Black locust (Robinia pseudoacacia) [TaxId: 35938]} Back     information, alignment and structure
>d1v6ia_ b.29.1.1 (A:) Legume lectin {Peanut (Arachis hypogaea) [TaxId: 3818]} Back     information, alignment and structure
>d1g8wa_ b.29.1.1 (A:) Phytohemagglutinin-L, PHA-L, also arcelin {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Back     information, alignment and structure
>d1dbna_ b.29.1.1 (A:) Legume lectin {Maackia amurensis, leukoagglutinin [TaxId: 37501]} Back     information, alignment and structure
>d1avba_ b.29.1.1 (A:) Phytohemagglutinin-L, PHA-L, also arcelin {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Back     information, alignment and structure
>d1gv9a_ b.29.1.13 (A:) Carbohydrate-recognition domain of P58/ERGIC-53 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d2a6va1 b.29.1.13 (A:9-226) Emp46p N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2a6za1 b.29.1.13 (A:7-227) Emp47p N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure