Citrus Sinensis ID: 047334

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360----
Protein Sequence
NLPSCIIEGPLKSQLLRIAEAYISVVRVNLIQHTQNSSIFLRFKNSIRDTACLVAMATPIEKSALEFIEQHLFGENSPIAGFSSSLSSDTCSQSQTSSSASSDRSFFNDAVFFDYESKPQIIDLVTPQPTNTCSELTNDFFEFDIRPQIQSQPSNCSSEFEPKPKISPNSSSQSSRKPSLKISVPKKAEGHHFTNRKSKAKPESSEEKHYRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTAIEAARAYDRAAFQLRGSKAILNFPLEAGKCDSNAAVARECDSSAEAGACETKRKRDCESEEEERKAKVVKTESADTVNEFPLTPASCAAFWDLHLDWDCGVKGIFNAPLLSPLSPQPLMVL
Secondary Structure (PSIPRED)
cccccccccHHHHHHHHHHHHHHEEEEEEEEEcccccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccccccccEEEEcccccHHHHHHHHHHHHHHccccccEEcccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccHHcccccccccccccEEEccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccHHEEEEEEEEEEEEEEEEccccccEHHHHHHcccccEEEEEcccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcEEEcccccEEEEEEcccccccEEEEcccccHHHHHHHHHHHHHHHHcccEEEccccHHcccccccccccccHHHHHHHHHHHccccccccccccccccEEEcccccccccccccccccccHHcccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
nlpsciiegplKSQLLRIAEAYISVVRVNLIQHTQNSSIFLRFKNSIRDTACLVAMATPIEKSALEFIEQHlfgenspiagfssslssdtcsqsqtsssassdrsffndavffdyeskpqiidlvtpqptntcseltndffefdirpqiqsqpsncssefepkpkispnsssqssrkpslkisvpkkaeghhftnrkskakpesseekhyrgvrrrpwgkyaaeirdptrrgVRVWLGTFDTAIEAARAYDRAAFQLRGSKAilnfpleagkcdsnaavarecdssaeagacetkrkrdcESEEEERKAKVVktesadtvnefpltpascaAFWDlhldwdcgvkgifnapllsplspqplmvl
Flexible Loop (DISEMBL)
nlpsciiegPLKSQLLRIAEAYISVVRVNLIQHTQNSSIFLRFKNSIRDTACLVAMATPIEKSALEFIEQHLFGENSPIAGFSSSLSSDTCSQSqtsssassdrsFFNDAVFFDYESKPQIIDLVTPQPTNTCSELTNDFFEFDIRPQIQSQpsncssefepkpkispnsssqssrkpslkisvpkkaeghhftnrkskakpesseekhyrgvrrrpwgkyaaeirdptrrgvrVWLGTFDTAIEAARAYDRAAFQLRGSKAILNFPLEAGKCDSNAAVARECdssaeagacetkrkrdceseeeerkakvvktesadtvnefplTPASCAAFWDLHLDWDCGVKGIFNapllsplspqplmvl
Low Complexity Region (SEG)
NLPSCIIEGPLKSQLLRIAEAYISVVRVNLIQHTQNSSIFLRFKNSIRDTACLVAMATPIEKSALEFIEQHLFGENSPIAGFssslssdtcsqsqtsssassdrsFFNDAVFFDYESKPQIIDLVTPQPTNTCSELTNDFFEFDIRPQIQSQPSNCSSEFEpkpkispnsssqssrkpslkisVPKKAEGHHFTNRkskakpesseekHYRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTaieaaraydraaFQLRGSKAILNFPLEAGKCDSNAAVARECDSSAEAGACETKRKRDCESEEEERKAKVVKTESADTVNEFPLTPASCAAFWDLHLDWDCGVKGIFNApllsplspqplMVL
Disordered region (IsUnstruct)
****CIIEGPLKSQLLRIAEAYISVVRVNLIQHTQNSSIFLRFKNSIRDTACLVAMATPIEKSALEFIEQHLFGE******************************FFNDAVFFDYESKPQIIDLVTPQPTNTCSELTNDFFEFDI*********************************************************************RRPWGKYAAEIRDPTRRGVRVWLGTFDTAIEAARAYDRAAFQLRGSKAILNFPLEAGKCD*********************************************VNEFPLTPASCAAFWDLHLDWDCGVKGIFNAPLL***********
Disordered Region (DISOPRED)
**PSCIIEGPLKSQLLRIAEAYISVVRVNLIQHTQNSSIFLRFKNSIRDTACLVAMATPIEKSALEFIEQHLFGENSPIAG*****************************************DLV*********ELTNDF************************************************************************VRRRPWGKYAAEIRDPTRRGVRVWLGTFDTAIEAARAYDRAAFQLRGSKAILNFPLE**********************************************************ASCAAFWDLHLDWDCGVKGIFNAPLLSPLSPQPLMVL
Disordered Region (DISEMBL)
NLPSCIIEGPLKSQLLRIAEAYISVVRVNLIQHTQNSSIFLRFKNSIRDTACLVAMATPIEKSALEFIEQHLFGENSPIAGFS********************RSFFNDAVFFDYESKPQIIDLVTPQPTNTCSELTNDFFEFDIRPQIQS**************************************************************RRRPWGKYAAEIRDPTRRGVRVWLGTFDTAIEAARAYDRAAFQLRGSKAILNFPLEAGKCDSNAA**************************************ADTVNEFPLTPASCAAFWDLHLDWDCGVKGIFNAPLLSPLSPQPLMVL
Disordered Region (DISPRO)
NLPSCIIEGPLKSQLLRIAEAYISVVRVNLIQHTQNSSIFLRFKNSIRDTACLVAMATPIEKSALEFIEQHLFGENSPIAG*************************************PQIIDLVT***********NDFFE*DI*************************************************************EKHYRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTAIEAARAYDRAAFQLRGSKAILNFPLEAGKCDS*************************************************LT*ASCAAFWDLHLDWDCGVKGIFNAPLLSPLSPQPLM**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
NLPSCIIEGPLKSQLLRIAEAYISVVRVNLIQHTQNSSIFLRFKNSIRDTACLVAMATPIEKSALEFIEQHLFGENSPIAGFSSSLSSDTCSQSQTSSSASSDRSFFNDAVFFDYESKPQIIDLVTPQPTNTCSELTNDFFEFDIRPQIQSQPSNCSSEFEPKPKISPNSSSQSSRKPSLKISVPKKAEGHHFTNRKSKAKPESSEEKHYRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTAIEAARAYDRAAFQLRGSKAILNFPLEAGKCDSNAAVARECDSSAEAGACETKRKRDCESEEEERKAKVVKTESADTVNEFPLTPASCAAFWDLHLDWDCGVKGIFNAPLLSPLSPQPLMVL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	364	2.2.26 [Sep-21-2011]
Q8VZ91	282	Ethylene-responsive trans	yes	no	0.728	0.939	0.442	1e-51
O80341	300	Ethylene-responsive trans	no	no	0.747	0.906	0.464	2e-51
Q9LW48	282	Ethylene-responsive trans	N/A	no	0.760	0.982	0.412	8e-43
Q40478	291	Ethylene-responsive trans	N/A	no	0.744	0.931	0.415	1e-41
Q8VY90	221	Ethylene-responsive trans	no	no	0.456	0.751	0.5	1e-39
Q9FKG1	241	Ethylene-responsive trans	no	no	0.596	0.900	0.409	6e-37
Q9LY05	207	Ethylene-responsive trans	no	no	0.239	0.420	0.597	5e-26
O04681	161	Pathogenesis-related gene	N/A	no	0.241	0.546	0.590	2e-24
Q8L9K1	226	Ethylene-responsive trans	no	no	0.392	0.632	0.429	4e-24
O80337	268	Ethylene-responsive trans	no	no	0.510	0.694	0.374	7e-24

>sp|Q8VZ91|EF103_ARATH Ethylene-responsive transcription factor 6 OS=Arabidopsis thaliana GN=ERF6 PE=2 SV=2

 Score =  204 bits (518), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 138/312 (44%), Positives = 177/312 (56%), Gaps = 47/312 (15%)

Query: 56  MATPIEKSALEFIEQHLFGENSPIAGFSSSLSSDTCSQSQTSSSASSDRSFFNDAVFFDY 115
           MATP E SAL  I+++L  E SP       L +   +    +   S D++ F    F ++
Sbjct: 1   MATPNEVSALFLIKKYLLDELSP-------LPTTATTNRWMNDFTSFDQTGFE---FSEF 50

Query: 116 ESKPQIIDLVTPQPTNTCSELTNDFFEFDIRPQIQSQPSNCSSEFEPKPKISPNSSSQSS 175
           E+KP+IIDLVTP+P         + F+FD++ +I S+ SN S  F+  P   P  + QS+
Sbjct: 51  ETKPEIIDLVTPKP---------EIFDFDVKSEIPSE-SNDSFTFQSNP---PRVTVQSN 97

Query: 176 RKPSLKISVPKKAEGHHFTNRKSKAKPE-------SSEEKHYRGVRRRPWGKYAAEIRDP 228
           RKP LKI+ P + +   F       KPE       + E++HYRGVR RPWGK+AAEIRDP
Sbjct: 98  RKPPLKIAPPNRTKWIQFAT--GNPKPELPVPVVAAEEKRHYRGVRMRPWGKFAAEIRDP 155

Query: 229 TRRGVRVWLGTFDTAIEAARAYDRAAFQLRGSKAILNFPLEAGKCDSNAAVARECDSSAE 288
           TRRG RVWLGTF+TAIEAARAYD+ AF+LRGSKAILNFPLE  K +  A   R       
Sbjct: 156 TRRGTRVWLGTFETAIEAARAYDKEAFRLRGSKAILNFPLEVDKWNPRAEDGR------- 208

Query: 289 AGACETKRKRDCESEEEERKAKVVKTESADTVNEFPLTPASCAAFWDLHLDWDCGVKGIF 348
                 KRKRD E EE     KV+KTE +  V+      +   A      DWD  +    
Sbjct: 209 --GLYNKRKRDGEEEEVTVVEKVLKTEESYDVSGGENVESGLTAI----DDWD--LTEFL 260

Query: 349 NAPLLSPLSPQP 360
           + PLLSPLSP P
Sbjct: 261 SMPLLSPLSPHP 272

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.
Arabidopsis thaliana (taxid: 3702)

>sp|O80341|EF102_ARATH Ethylene-responsive transcription factor 5 OS=Arabidopsis thaliana GN=ERF5 PE=2 SV=1

 Score =  202 bits (515), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 150/323 (46%), Positives = 178/323 (55%), Gaps = 51/323 (15%)

Query: 56  MATPIEKSALEFIEQHLFGENSPIAG----FSSSLSSDTCSQSQTSSSASSDRSFFNDAV 111
           MATP E SAL FIE+HL  E SP+A        S S+   S   +S    S  S F    
Sbjct: 1   MATPNEVSALWFIEKHLLDEASPVATDPWMKHESSSATESSSDSSSIIFGSSSSSFAPID 60

Query: 112 FFDYESKPQIIDLVTPQ-------PTNTCSELTNDFFEFDIRPQIQSQPSNCSSEFEPKP 164
           F +   KP+IIDL TP+       P    SE++    +FD +P  Q+Q     ++FEP+ 
Sbjct: 61  FSESVCKPEIIDLDTPRSMEFLSIPFEFDSEVSVS--DFDFKPSNQNQ-----NQFEPEL 113

Query: 165 KISPNSSSQSSRKPSLKISVPKKAEGHHFTNRKSK---AKPESSEEK-HYRGVRRRPWGK 220
           K          RKP LKIS+P K E   F    +K    KP S EEK HYRGVR+RPWGK
Sbjct: 114 K-------SQIRKPPLKISLPAKTEWIQFAAENTKPEVTKPVSEEEKKHYRGVRQRPWGK 166

Query: 221 YAAEIRDPTRRGVRVWLGTFDTAIEAARAYDRAAFQLRGSKAILNFPLEAGKCDSNAAVA 280
           +AAEIRDP +RG RVWLGTFDTAIEAARAYD AAF+LRGSKAILNFPLE GK        
Sbjct: 167 FAAEIRDPNKRGSRVWLGTFDTAIEAARAYDEAAFRLRGSKAILNFPLEVGKW------- 219

Query: 281 RECDSSAEAGACETKRKRDCESEEEERKAKVVKTESADTVN---EFPLTPASCAAFWDLH 337
                   A   E KRKRD + E+     KV+KTE +  VN    FP   ++        
Sbjct: 220 -----KPRADEGEKKRKRD-DDEKVTVVEKVLKTEQSVDVNGGETFPFVTSNLTEL---- 269

Query: 338 LDWDCGVKGIFNAPLLSPLSPQP 360
            DWD  + G  N PLLSPLSP P
Sbjct: 270 CDWD--LTGFLNFPLLSPLSPHP 290

Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LW48|ERF5_NICSY Ethylene-responsive transcription factor 5 OS=Nicotiana sylvestris GN=ERF5 PE=2 SV=1

 Score =  174 bits (441), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 129/313 (41%), Positives = 173/313 (55%), Gaps = 36/313 (11%)

Query: 56  MATPIEKSA-LEFIEQHLFGENSPIAGFSSSLSSDTCSQSQTSSSASSDRSFFNDAVFFD 114
           MA+P E S  L+ I QHL  +N  +  + S   + T   SQ+SSS+ S    F+     +
Sbjct: 1   MASPQENSTTLDLIRQHLLDDNVFLEHYCSETETTTLIYSQSSSSSESLDQSFSFEPTLN 60

Query: 115 YESKPQIIDL-VTPQPTNTCSELTNDFFEFDIRPQIQSQPSNCSSEFEPKPKISPNSSSQ 173
           Y +  Q  +L V+    N+ +E   D FEF   P + +  S+           S   +S 
Sbjct: 61  YATTAQSSNLEVSTFFNNSKTEF--DSFEFGTIPNVSAARSS-----------SLKQTSF 107

Query: 174 SSRKPSLKISVPKKAEGHHFTNRKSKAKPESSEEKHYRGVRRRPWGKYAAEIRDPTRRGV 233
             RKPSL I++P K E      +K +  P  +E+KHYRGVR+RPWGK+AAEIRDP R+G 
Sbjct: 108 KERKPSLNIAIPVKQE----VVQKVELAP--TEKKHYRGVRQRPWGKFAAEIRDPNRKGT 161

Query: 234 RVWLGTFDTAIEAARAYDRAAFQLRGSKAILNFPLEAG--KCDSNAAVARECDSSAEAGA 291
           RVWLGTFDTAIEAA+AYDRAA++LRGSKAI+NFPLE    K + N  +    +SS     
Sbjct: 162 RVWLGTFDTAIEAAKAYDRAAYKLRGSKAIVNFPLEVANFKQEFNNEIRPLVNSSR---- 217

Query: 292 CETKRKRDCESEEEERKAKVVKTESADTVNEFPLTPASCAAFWDLHLDWDCGVKGIFNAP 351
              KR R+  +EE+    K +K E  + V   PLTP+S +A WD         KGIF  P
Sbjct: 218 ---KRVRETVNEEQLVINKEMKIEE-ERVPTAPLTPSSWSAIWD-----SGDGKGIFEVP 268

Query: 352 LLSPLSPQPLMVL 364
            LSP      +V+
Sbjct: 269 PLSPFGAYSQLVM 281

Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional activator.

Nicotiana sylvestris (taxid: 4096)

>sp|Q40478|ERF5_TOBAC Ethylene-responsive transcription factor 5 OS=Nicotiana tabacum GN=ERF5 PE=2 SV=1

 Score =  170 bits (431), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 131/315 (41%), Positives = 169/315 (53%), Gaps = 44/315 (13%)

Query: 56  MATPIEK-SALEFIEQHLFGENSPIAGFSSS--LSSDTCSQSQTSSSASSDRSFFNDAVF 112
           MA+P E  + L+ I QHL  +N  +  +     L S + S S++ +S +S+    N+  F
Sbjct: 1   MASPQENCTTLDLIRQHLLDDNVFMEHYCPQPILYSQSSSSSESLNSIASE---LNNETF 57

Query: 113 FDYESKPQIIDLVTPQPTNTCSELTNDFFEFDIRPQIQSQPSNCSSEFEPKP-----KIS 167
             +E   +  D       +  S   N   EFD            S EFE KP     +IS
Sbjct: 58  -SFEPTLKYADTAQSSNLDISSFFNNSKTEFD------------SFEFETKPNVSAARIS 104

Query: 168 PNSSSQSS---RKPSLKISVPKKAEGHHFTNRKSKAKPESSEEKHYRGVRRRPWGKYAAE 224
            NS  Q+S   RKPSL I++P K           K +   +E+KHYRGVR+RPWGK+AAE
Sbjct: 105 SNSPKQTSFKERKPSLNIAIPMKQ-----QEVVQKVEVVPTEKKHYRGVRQRPWGKFAAE 159

Query: 225 IRDPTRRGVRVWLGTFDTAIEAARAYDRAAFQLRGSKAILNFPLEAGKCDSNAAVARECD 284
           IRDP R+G RVWLGTFDTAIEAA+AYDRAAF+LRGSKAI+NFPLE       A   ++ +
Sbjct: 160 IRDPNRKGTRVWLGTFDTAIEAAKAYDRAAFKLRGSKAIVNFPLEV------ANFKQQDN 213

Query: 285 SSAEAGACETKRKRDCESEEEERKAKVVKTESADTVNEFPLTPASCAAFWDLHLDWDCGV 344
              +      KR R+ E+EE   K K VK E        PLTP+S +A W+         
Sbjct: 214 EILQPANSGRKRMRETENEEIVIK-KEVKREERVPAAAAPLTPSSWSAIWEGE-----DG 267

Query: 345 KGIFNAPLLSPLSPQ 359
           KGIF  P LSPLSP 
Sbjct: 268 KGIFEVPPLSPLSPH 282

Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase/phosphatase cascade, and to be influenced by methyl-jasmonate.

Nicotiana tabacum (taxid: 4097)

>sp|Q8VY90|EF105_ARATH Ethylene-responsive transcription factor ERF105 OS=Arabidopsis thaliana GN=ERF105 PE=2 SV=1

 Score =  163 bits (413), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 95/190 (50%), Positives = 118/190 (62%), Gaps = 24/190 (12%)

Query: 169 NSSSQSSRKPSL-KISVPKKAEGHHFTNRKSKAKPESSEEKHYRGVRRRPWGKYAAEIRD 227
            +S+ S RKP L  I+VP  A              + ++++HYRGVRRRPWGKYAAEIRD
Sbjct: 41  TTSTLSQRKPPLATIAVPTTA-----------PVVQENDQRHYRGVRRRPWGKYAAEIRD 89

Query: 228 PTRRGVRVWLGTFDTAIEAARAYDRAAFQLRGSKAILNFPLEAGKCDSNAAVARECDSSA 287
           P ++GVRVWLGTFDTA+EAAR YD+AAF+LRGSKAILNFPLEAGK +       +   + 
Sbjct: 90  PNKKGVRVWLGTFDTAMEAARGYDKAAFKLRGSKAILNFPLEAGKHE-------DLGDNK 142

Query: 288 EAGACETKRKRDC-ESEEEERKAKVVKTESADT-VNEFPLTPASCAAFWDLHLDWDCGVK 345
           +  + + KRKR   E E +    K VK E A    +  PLTP+S   FWD     D    
Sbjct: 143 KTISLKAKRKRQVTEDESQLISRKAVKREEAQVQADACPLTPSSWKGFWD---GADSKDM 199

Query: 346 GIFNAPLLSP 355
           GIF+ PLLSP
Sbjct: 200 GIFSVPLLSP 209

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FKG1|EF104_ARATH Ethylene-responsive transcription factor ERF104 OS=Arabidopsis thaliana GN=ERF104 PE=1 SV=1

 Score =  155 bits (391), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 107/261 (40%), Positives = 139/261 (53%), Gaps = 44/261 (16%)

Query: 109 DAVFFDYESKPQIIDLVTPQPTNTCSELTNDFFEFDIRPQIQSQPSNCSSEFEPKPKISP 168
           +A+  D+ S+  + D V+ + T+  S  TN    F      ++ P   +++  PKP    
Sbjct: 6   EALAIDFISQHLLTDFVSME-TDHPSLFTNQLHNF----HSETGPRTITNQ-SPKP---- 55

Query: 169 NSSSQSSRKPSL-KISVPKKAEGHHFTNRKSKAKPESSEEKHYRGVRRRPWGKYAAEIRD 227
            +S+ + RKP L  +SV +           S    +  EE+HYRGVRRRPWGKYAAEIRD
Sbjct: 56  -NSTLNQRKPPLPNLSVSRTV---------STKTEKEEEERHYRGVRRRPWGKYAAEIRD 105

Query: 228 PTRRGVRVWLGTFDTAIEAARAYDRAAFQLRGSKAILNFPLEAGKCDSNAAVARECDSSA 287
           P ++G R+WLGT+DTA+EA RAYD+AAFQLRG KAILNFPL+          +  C  S 
Sbjct: 106 PNKKGCRIWLGTYDTAVEAGRAYDQAAFQLRGRKAILNFPLDV------RVTSETC--SG 157

Query: 288 EAGACETKRKRDCESEEEERKAKVVKT----------ESADTVNEFPLTPASCAAFWDLH 337
           E      KRKRD  S  EE KA  VK             A+     PLTP+S   FWD+ 
Sbjct: 158 EGVIGLGKRKRDKGSPPEEEKAARVKVEEEESNTSETTEAEVEPVVPLTPSSWMGFWDVG 217

Query: 338 LDWDCGVKGIFNAPLLSPLSP 358
                   GIF+ P LSP SP
Sbjct: 218 AG-----DGIFSIPPLSPTSP 233

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LY05|EF106_ARATH Ethylene-responsive transcription factor ERF106 OS=Arabidopsis thaliana GN=ERF106 PE=2 SV=1

 Score =  119 bits (297), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 52/87 (59%), Positives = 71/87 (81%)

Query: 196 RKSKAKPESSEEKHYRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTAIEAARAYDRAAF 255
           +K++   E  + +HYRGVRRRPWGK+AAEIRDP ++G R+WLGTF++ ++AARAYD AAF
Sbjct: 96  KKAERFEEEVDARHYRGVRRRPWGKFAAEIRDPAKKGSRIWLGTFESDVDAARAYDCAAF 155

Query: 256 QLRGSKAILNFPLEAGKCDSNAAVARE 282
           +LRG KA+LNFPL+AGK ++ A   R+
Sbjct: 156 KLRGRKAVLNFPLDAGKYEAPANSGRK 182

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|O04681|PTI5_SOLLC Pathogenesis-related genes transcriptional activator PTI5 OS=Solanum lycopersicum GN=PTI5 PE=2 SV=1

 Score =  114 bits (284), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 52/88 (59%), Positives = 64/88 (72%)

Query: 182 ISVPKKAEGHHFTNRKSKAKPESSEEKHYRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFD 241
           +++P   + +    R +  +P     K YRGVRRRPWGKYAAEIRD  R G RVWLGTF+
Sbjct: 31  LNIPYLPQRNQLLPRNNILRPLQCIGKKYRGVRRRPWGKYAAEIRDSARHGARVWLGTFE 90

Query: 242 TAIEAARAYDRAAFQLRGSKAILNFPLE 269
           TA EAA AYDRAAF++RG+KA+LNFP E
Sbjct: 91  TAEEAALAYDRAAFRMRGAKALLNFPSE 118

Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Activates plants defense genes. Can confer resistance to Pseudomonas syringae tomato by potentiating the transcription of a set of pathogenesis related genes, downstream to a defense signaling pathway involving PTO and PRF, but probably independent of ethylene, jasmonate and salicylic acid.

Solanum lycopersicum (taxid: 4081)

>sp|Q8L9K1|ERF99_ARATH Ethylene-responsive transcription factor 13 OS=Arabidopsis thaliana GN=ERF13 PE=2 SV=2

 Score =  112 bits (280), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 70/163 (42%), Positives = 84/163 (51%), Gaps = 20/163 (12%)

Query: 164 PKISPNSSSQSSRKPSLKISVPKKAEGHHFTNRKSKAKPESSEEKHYRGVRRRPWGKYAA 223
           P + P +S     KP        KA G H   +K            YRGVRRRPWGK+AA
Sbjct: 60  PSVPPVTSPAEENKPPAT-----KASGSHAPRQKGM---------QYRGVRRRPWGKFAA 105

Query: 224 EIRDPTRRGVRVWLGTFDTAIEAARAYDRAAFQLRGSKAILNFPLEAGKCDSNAAVAREC 283
           EIRDP + G RVWLGT++T  +AA AYDRAAFQLRGSKA LNFP   G C       R  
Sbjct: 106 EIRDPKKNGARVWLGTYETPEDAAVAYDRAAFQLRGSKAKLNFPHLIGSCKYEPVRIRPR 165

Query: 284 DSSAEAGACETKRKRDCESEEEERKAKVVKTESADTVNEFPLT 326
             S E          D  + E++R++ V   ES+  V E   T
Sbjct: 166 RRSPEPSVS------DQLTSEQKRESHVDDGESSLVVPELDFT 202

Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|O80337|EF100_ARATH Ethylene-responsive transcription factor 1A OS=Arabidopsis thaliana GN=ERF1A PE=1 SV=2

 Score =  111 bits (278), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 79/211 (37%), Positives = 103/211 (48%), Gaps = 25/211 (11%)

Query: 65  LEFIEQHLFGENSPIAGFSSSLS-SDTCSQSQTSSSASSDRSFFNDAVFFDYESKPQIID 123
           LE I +HL GE+ PI   S++ S + +C   Q+          F+       ES   +  
Sbjct: 14  LESIRRHLLGESEPILSESTASSVTQSCVTGQSIKPVYGRNPSFSKLYPCFTESWGDLPL 73

Query: 124 LVTPQPTNTCSELTNDFFEFDIRPQIQSQPSNCSSEFEPKPKISPNSSSQSSRKPSLKIS 183
                       + ND F     P   S                       S  PS+KI 
Sbjct: 74  KENDSEDMLVYGILNDAFHGGWEPSSSSS------------------DEDRSSFPSVKIE 115

Query: 184 VPKK-AEGHHFTNRKSKAKPES-----SEEKHYRGVRRRPWGKYAAEIRDPTRRGVRVWL 237
            P+  A       +K K  P S     ++ KHYRGVR+RPWGK+AAEIRDP + G RVWL
Sbjct: 116 TPESFAAVDSVPVKKEKTSPVSAAVTAAKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWL 175

Query: 238 GTFDTAIEAARAYDRAAFQLRGSKAILNFPL 268
           GTF+TA +AA AYDRAAF++RGS+A+LNFPL
Sbjct: 176 GTFETAEDAALAYDRAAFRMRGSRALLNFPL 206

Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	364
320097164	309	ethylene-responsive element binding fact	0.848	1.0	0.967	1e-150
402810647	343	ERF5-2 [Populus x canadensis]	0.755	0.801	0.449	6e-61
224113543	345	AP2/ERF domain-containing transcription	0.739	0.779	0.447	3e-58
89257455	296	ethylene responsive element binding fact	0.755	0.929	0.455	2e-57
402810645	355	ERF5-1 [Populus x canadensis]	0.719	0.738	0.433	2e-56
40060533	341	putative ethylene response factor 5 [Vit	0.752	0.803	0.433	6e-54
17473792	282	unknown protein [Arabidopsis thaliana] g	0.728	0.939	0.442	9e-53
300079022	305	ethylene response factor 13 [Actinidia d	0.736	0.878	0.437	1e-52
292668893	332	AP2 domain class transcription factor [M	0.714	0.783	0.418	2e-51
224074205	320	AP2/ERF domain-containing transcription	0.684	0.778	0.440	7e-51

>gi|320097164|gb|ADW09319.1| ethylene-responsive element binding factor 6 [Citrus medica var. sarcodactylis]

 Score =  536 bits (1381), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 299/309 (96%), Positives = 300/309 (97%)

Query: 56  MATPIEKSALEFIEQHLFGENSPIAGFSSSLSSDTCSQSQTSSSASSDRSFFNDAVFFDY 115
           MATPIEKSALEFIEQHLFGENSPIAGFSSSLSSDTCSQSQTSSSASSDRSFFNDA FFDY
Sbjct: 1   MATPIEKSALEFIEQHLFGENSPIAGFSSSLSSDTCSQSQTSSSASSDRSFFNDAAFFDY 60

Query: 116 ESKPQIIDLVTPQPTNTCSELTNDFFEFDIRPQIQSQPSNCSSEFEPKPKISPNSSSQSS 175
           ESKPQII+LVTPQPTNTCSELTNDFFEFDIRPQIQSQPSNCSSEFEPKPKISPNSSSQSS
Sbjct: 61  ESKPQIIELVTPQPTNTCSELTNDFFEFDIRPQIQSQPSNCSSEFEPKPKISPNSSSQSS 120

Query: 176 RKPSLKISVPKKAEGHHFTNRKSKAKPESSEEKHYRGVRRRPWGKYAAEIRDPTRRGVRV 235
           RKPSLKISVPKKAEGHHFTNRKSKAKPESSEEKHYRGVRRRPWGKYAAEIRDPTRRGVRV
Sbjct: 121 RKPSLKISVPKKAEGHHFTNRKSKAKPESSEEKHYRGVRRRPWGKYAAEIRDPTRRGVRV 180

Query: 236 WLGTFDTAIEAARAYDRAAFQLRGSKAILNFPLEAGKCDSNAAVARECDSSAEAGACETK 295
           WLGTFDTAIEAARAYDRAAFQLRGSKAILNFPLEAGKCDSNAAVARE DSSA AG CETK
Sbjct: 181 WLGTFDTAIEAARAYDRAAFQLRGSKAILNFPLEAGKCDSNAAVAREWDSSAGAGPCETK 240

Query: 296 RKRDCESEEEERKAKVVKTESADTVNEFPLTPASCAAFWDLHLDWDCGVKGIFNAPLLSP 355
           RKRDCE EEEERKAK VKTESADTVNE PLTPASCAAFWDL LDWDCGVKGIFNAPLLSP
Sbjct: 241 RKRDCEREEEERKAKAVKTESADTVNELPLTPASCAAFWDLQLDWDCGVKGIFNAPLLSP 300

Query: 356 LSPQPLMVL 364
           LSP PLMVL
Sbjct: 301 LSPHPLMVL 309

Source: Citrus medica var. sarcodactylis

Species: Citrus medica

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|402810647|gb|AFR11381.1| ERF5-2 [Populus x canadensis]

 Score =  241 bits (614), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 159/354 (44%), Positives = 202/354 (57%), Gaps = 79/354 (22%)

Query: 63  SALEFIEQHLFGEN-SPIAG---------FSSSLSSDTCSQSQTSSSA------------ 100
           +ALEFI+ HL G+  SPIA          FS++    TC  +   S              
Sbjct: 7   TALEFIKHHLLGDLLSPIATSSSSASSCQFSTNTEISTCETTGCCSQTSTSDSTTAFPYF 66

Query: 101 --SSDRSFF-----------NDAVFFDYESKPQIIDLVTPQPTNTCSELTN--------- 138
             S    FF           N    F++E+KP+IIDL+TP+P ++ S L +         
Sbjct: 67  LDSPGPDFFVFSSDFSPAQDNKTNIFEFEAKPEIIDLLTPKPLDSTSHLNSQPSSSSSSS 126

Query: 139 DFFEFDIRPQIQSQPSNCSSEFEPKPKISPNSSSQSSRKPSLKISVP-KKAEGHHFTNRK 197
           + FEF ++PQI S P N     E +P + P      +RKPSLKIS+P +K+E   F+N  
Sbjct: 127 NLFEF-VKPQIISHPGNNFFYEESRPGVEP------TRKPSLKISLPSRKSEWIQFSNTN 179

Query: 198 SKAKPESS-----EEKHYRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTAIEAARAYDR 252
            +   ++S     E+KHYRGVR RPWGKYAAEIRDP RRG RVWLGTFDTA+EAARAYDR
Sbjct: 180 PQPVDDNSGVAVEEKKHYRGVRHRPWGKYAAEIRDPNRRGSRVWLGTFDTALEAARAYDR 239

Query: 253 AAFQLRGSKAILNFPLEAGKCDSNAAVARECDSSAEAGACETKRKRDCESEEEE---RKA 309
           AAF+LRGSKAILNFPLEAG+CD  A          E G  E KR R+C++EE E   R  
Sbjct: 240 AAFKLRGSKAILNFPLEAGRCDVRA---------NEEG--ERKRLRECDAEEREDVKRVM 288

Query: 310 KVVKTESADTVNEFPLTPASCAAFWDLHLDWDCG-VKGIFNAPLLSPLSPQPLM 362
           +VVK E  +   + PLTP+ C A WD+     CG  KG+FN P LSPL+P P +
Sbjct: 289 RVVKREEPE--RDVPLTPSCCTAVWDI-----CGDSKGVFNVPPLSPLAPHPSL 335

Source: Populus x canadensis

Species: Populus x canadensis

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224113543|ref|XP_002332559.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa] gi|222835043|gb|EEE73492.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa]

 Score =  231 bits (590), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 157/351 (44%), Positives = 203/351 (57%), Gaps = 82/351 (23%)

Query: 56  MATPIEKSALEFIEQHLFGEN-SPIAGFSSS----LSSDT----------CSQSQTSSSA 100
           M+T +  +ALEFI+ HL G+  SPIA  SS+     S++T          CSQ+ TS S+
Sbjct: 1   MSTEV-STALEFIKHHLLGDLLSPIATSSSASFCQFSTNTEISTYETTGCCSQASTSDSS 59

Query: 101 SSDRSFF-------------------NDAVFFDYESKPQIIDLVTPQPTNTCSELTND-- 139
           ++   F                    N    F++E+KP+IIDL+TP+P ++ S L +   
Sbjct: 60  TAFPYFLDSPGPDFFVFSSDFSPAQDNKTNIFEFEAKPEIIDLLTPKPLDSTSHLNSQPS 119

Query: 140 ----------FFEFDIRPQIQSQPSNCSSEFEPKPKISPNSSSQSSRKPSLKISVP-KKA 188
                      FEF ++PQI S P N     E KP++ P      +RKPSLKIS+P +K+
Sbjct: 120 SSSSSSNSSNLFEF-VKPQIISHPVNNFFYEESKPRVEP------TRKPSLKISLPSRKS 172

Query: 189 EGHHFTNRKSKAKPESS-----EEKHYRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTA 243
           E   F+N   +   ++S     E+KHYRGVR RPWGKYAAEIRDP RRG RVWLGTFDTA
Sbjct: 173 EWIQFSNTNPQPVDDNSGVAVEEKKHYRGVRHRPWGKYAAEIRDPNRRGSRVWLGTFDTA 232

Query: 244 IEAARAYDRAAFQLRGSKAILNFPLEAGKCDSNAAVARECDSSAEAGACETKRKRDCESE 303
           +EAARAYDRAAF+LRGSKAILNFPLEAG+CD  A          E G  E KR R+ ++E
Sbjct: 233 LEAARAYDRAAFKLRGSKAILNFPLEAGRCDVRA---------NEEG--ERKRLREGDAE 281

Query: 304 EEE---RKAKVVKTESADTVNEFPLTPASCAAFWDLHLDWDCG-VKGIFNA 350
           E E   R  +VVK E  +   + PLTP+ C A WD+     CG  KG+FN 
Sbjct: 282 EREDVKRVMRVVKREEPE--RDVPLTPSCCTAVWDI-----CGDSKGVFNV 325

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|89257455|gb|ABD64947.1| ethylene responsive element binding factor, putative [Brassica oleracea]

 Score =  228 bits (582), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 144/316 (45%), Positives = 185/316 (58%), Gaps = 41/316 (12%)

Query: 56  MATPIEKSALEFIEQHLFGENSPIAGFSSSLSSDTCSQSQTSSSASSDRSFFNDAVFFDY 115
           MA P E SAL FIE+HL  E SP+A     +     ++S + +S +   S      F ++
Sbjct: 1   MANPSEASALRFIEKHLLDELSPVATDRWMIHESAATESSSDTSPTIFGSPAAPIEFSEF 60

Query: 116 ESKPQIIDLVTPQ-------PTNTCSELTNDFFEFDIRPQIQSQPSNCSSEFEPKPKISP 168
           E+KP+IIDL TP+       P    SE++    +FD++P  Q+      ++FEP+ K   
Sbjct: 61  ENKPEIIDLSTPRFVDLISSPFEFDSEVS--LSDFDLKPSYQT-----GNQFEPEIK--- 110

Query: 169 NSSSQSSRKPSLKISVPKKAEGHHFTNRKSKAKPESS---EEKHYRGVRRRPWGKYAAEI 225
              +QS+RKP LKISVP K E   F  +    KP+ +   E+KHYRGVR+RPWGK+AAEI
Sbjct: 111 ---TQSNRKPPLKISVPTKTEWIQFDPQPEVTKPKQAIAEEKKHYRGVRQRPWGKFAAEI 167

Query: 226 RDPTRRGVRVWLGTFDTAIEAARAYDRAAFQLRGSKAILNFPLEAGKCDSNAAVARECDS 285
           RDP +RG R+WLGTFDTAIEAARAYD+AAF+LRGSKAILNFPLE GK  +          
Sbjct: 168 RDPNKRGSRIWLGTFDTAIEAARAYDQAAFRLRGSKAILNFPLEVGKWKTRY-------- 219

Query: 286 SAEAGACETKRKRDCESEEEERKAKVVKTESADTVNE-FPLTPASCAAFWDLHLDWDCGV 344
                  E KRKRD E E+     KV+KTE      E FPL  +     +    DWD  +
Sbjct: 220 ---NADGEKKRKRDDELEDVTVVEKVLKTEQNVNGKETFPLVKSDLTELY----DWD--L 270

Query: 345 KGIFNAPLLSPLSPQP 360
            G  N PLLSPLSP+P
Sbjct: 271 TGFLNFPLLSPLSPRP 286

Source: Brassica oleracea

Species: Brassica oleracea

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|402810645|gb|AFR11380.1| ERF5-1 [Populus x canadensis]

 Score =  226 bits (575), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 152/351 (43%), Positives = 191/351 (54%), Gaps = 89/351 (25%)

Query: 63  SALEFIEQHLFGEN-SPIAG-------FSSSLSSDTCSQSQTSSSASSDRS-----FF-- 107
           SALEFI+QHL G+  SP+A        FS++ ++ T  Q +T+S +SSD S     FF  
Sbjct: 11  SALEFIKQHLLGDLLSPVATSSASFYQFSTNSATSTSLQCETTSCSSSDFSTALPDFFGS 70

Query: 108 -------------NDAVFFDYESKPQIIDLVTPQPTNTCSELT--------------NDF 140
                        N+   F++E KP+IIDL TP P N+ S +               N F
Sbjct: 71  LLEFTSVLSPAQENNTNIFEFEPKPEIIDLFTPTPLNSTSHINFQSSSSSTGSSGGSNFF 130

Query: 141 -----------FEFDIRPQIQSQPSNCSSEFEPKPKISPNSSSQSSRKPSLKISVP-KKA 188
                      FEFD +PQI SQ SN     EPKP++      Q++RK SLKIS+P KK 
Sbjct: 131 EFESKPQIHQNFEFDSKPQIVSQRSNSFFYEEPKPQV------QTARKRSLKISLPSKKP 184

Query: 189 EGHHFTNRKSKAKPESSEE---------KHYRGVRRRPWGKYAAEIRDPTRRGVRVWLGT 239
           E   F+   S   P++ E+         +HYRGVRRRPWGKYAAEIRDP RRG RVWLGT
Sbjct: 185 EWIQFS---SNPNPQTVEDNSGVAAQEIRHYRGVRRRPWGKYAAEIRDPNRRGSRVWLGT 241

Query: 240 FDTAIEAARAYDRAAFQLRGSKAILNFPLEAGKCDSNAAVARECDSSAEAGACETKRKRD 299
           FDT +EAA+AYDRAAF+LRGSKAILNFPLEAG+C   +   R  +   E           
Sbjct: 242 FDTDLEAAKAYDRAAFKLRGSKAILNFPLEAGRCGEESERKRSREGGVE----------- 290

Query: 300 CESEEEERKAKVVKTESADTVNEFPLTPASCAAFWDLHLDWDCGVKGIFNA 350
            E E+ +R   VVK E  +T  + PLTP+S  AFWD         K +FN 
Sbjct: 291 -EREDAKRVMTVVKREEPETEGDIPLTPSSWTAFWD-----GGDTKDVFNV 335

Source: Populus x canadensis

Species: Populus x canadensis

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|40060533|gb|AAR37423.1| putative ethylene response factor 5 [Vitis aestivalis]

 Score =  217 bits (553), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 163/376 (43%), Positives = 205/376 (54%), Gaps = 102/376 (27%)

Query: 56  MATPIEKSALEFIEQHLFGENSP--------IAG--FSSSLSSDTCSQSQTSSS------ 99
           MAT +E SAL+ I QHL GE SP          G  +S+ L+S+  S SQ+ SS      
Sbjct: 1   MATAVEVSALQLIRQHLLGELSPKNIVVTDLTVGEEWSNGLNSE-VSTSQSDSSFCFQAA 59

Query: 100 ------------ASSDRS--FFN----------DAVFFDYESKPQIIDLVTPQPTNTCSE 135
                        S+D S  FF            + FF++E+KPQIIDL +P+  N+   
Sbjct: 60  SCDSPVTISELFGSTDLSADFFGFVPSSTSEQSQSNFFEFETKPQIIDLTSPKGLNS--- 116

Query: 136 LTNDFFEFDIRPQIQSQPSNCSSEFEPKPKISPNSSSQSS---RKPSLKISVP---KKAE 189
             + FFEF+ +PQI+      S           +SSSQS+   RKPSLKISVP   K+ E
Sbjct: 117 --SHFFEFETKPQIKDTTKTKSL----------DSSSQSTGKDRKPSLKISVPRPTKEIE 164

Query: 190 GHHFTNRKSKAKPESS-------EEKHYRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDT 242
              F   K  A  E +       E+KHYRGVR+RPWGK+AAEIRDP RRG RVWLGT++T
Sbjct: 165 WLEFAEPKQAATVEPAQNISHPEEKKHYRGVRQRPWGKFAAEIRDPKRRGSRVWLGTYET 224

Query: 243 AIEAARAYDRAAFQLRGSKAILNFPLEAGKCDSNAAVARECDSSAEAGACETKRKRDCES 302
           AIEAA+AYDRAAFQ+RGSKAILNFPLEAGK           ++S + G    KR R+ E 
Sbjct: 225 AIEAAKAYDRAAFQMRGSKAILNFPLEAGKS---------AETSTDYG---RKRCREAEP 272

Query: 303 EEEERK----AKVVKTESADTV----NEFPLTPASCAAFWDLHLDWDCGVKGIFNAPLLS 354
           E  E +    AK  K   A+T+    N+ PLTP    +FWD  LD    V  + N P +S
Sbjct: 273 EVTEMEANPPAKKEKLPEANTITRVQNDTPLTP----SFWDFDLD---SVGCLINVPPIS 325

Query: 355 PLSPQP------LMVL 364
           PLSP P      LMV+
Sbjct: 326 PLSPHPKFGFPQLMVI 341

Source: Vitis aestivalis

Species: Vitis aestivalis

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|17473792|gb|AAL38331.1| unknown protein [Arabidopsis thaliana] gi|21387007|gb|AAM47907.1| unknown protein [Arabidopsis thaliana]

 Score =  213 bits (543), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 138/312 (44%), Positives = 177/312 (56%), Gaps = 47/312 (15%)

Query: 56  MATPIEKSALEFIEQHLFGENSPIAGFSSSLSSDTCSQSQTSSSASSDRSFFNDAVFFDY 115
           MATP E SAL  I+++L  E SP       L +   +    +   S D++ F    F ++
Sbjct: 1   MATPNEVSALFLIKKYLLDELSP-------LPTTATTNRWMNDFTSFDQTGFE---FSEF 50

Query: 116 ESKPQIIDLVTPQPTNTCSELTNDFFEFDIRPQIQSQPSNCSSEFEPKPKISPNSSSQSS 175
           E+KP+IIDLVTP+P         + F+FD++ +I S+ SN S  F+  P   P  + QS+
Sbjct: 51  ETKPEIIDLVTPKP---------EIFDFDVKSEIPSE-SNDSFTFQSNP---PRVTVQSN 97

Query: 176 RKPSLKISVPKKAEGHHFTNRKSKAKPE-------SSEEKHYRGVRRRPWGKYAAEIRDP 228
           RKP LKI+ P + +   F       KPE       + E++HYRGVR RPWGK+AAEIRDP
Sbjct: 98  RKPPLKIAPPNRTKWIQFAT--GNPKPELPVPVVAAEEKRHYRGVRMRPWGKFAAEIRDP 155

Query: 229 TRRGVRVWLGTFDTAIEAARAYDRAAFQLRGSKAILNFPLEAGKCDSNAAVARECDSSAE 288
           TRRG RVWLGTF+TAIEAARAYD+ AF+LRGSKAILNFPLE  K +  A   R       
Sbjct: 156 TRRGTRVWLGTFETAIEAARAYDKEAFRLRGSKAILNFPLEVDKWNPRAEDGR------- 208

Query: 289 AGACETKRKRDCESEEEERKAKVVKTESADTVNEFPLTPASCAAFWDLHLDWDCGVKGIF 348
                 KRKRD E EE     KV+KTE +  V+      +   A      DWD  +    
Sbjct: 209 --GLYNKRKRDGEEEEVTMVEKVLKTEESYDVSGGENVESGLTAI----DDWD--LTEFL 260

Query: 349 NAPLLSPLSPQP 360
           + PLLSPLSP P
Sbjct: 261 SMPLLSPLSPHP 272

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|300079022|gb|ADJ67442.1| ethylene response factor 13 [Actinidia deliciosa]

 Score =  213 bits (543), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 147/336 (43%), Positives = 184/336 (54%), Gaps = 68/336 (20%)

Query: 56  MATPIEKSALEFIEQHLFGENSPIAGFSSSLSSDTCS------------QSQTSSSASSD 103
           MAT  E SALE I+ HL GE SP+  F + LS  + S             SQ + S+  +
Sbjct: 1   MATTDEISALELIKLHLLGEVSPVGKFVAELSEVSSSGSDSLSSQTSSCDSQITISSCVN 60

Query: 104 RSFFNDAVFFDYESKPQIIDLVTPQPTNTCSELTNDFFEFDIRPQIQSQPSNCSSEFEPK 163
            +  NDA  FD++                    + DFFEF+ +PQI    +       P+
Sbjct: 61  SNEVNDADLFDFDP------------------YSVDFFEFESKPQIIDLAT-------PR 95

Query: 164 P-KISPNSSSQS---SRKPSLKISVPK----KAEGHHFTN---RKSKAKPESSEEK-HYR 211
           P  +SP SSSQS    R+  + ++  K    K E   F+      S+ KP  +EE+ HYR
Sbjct: 96  PVDLSPKSSSQSRLVERRLKIDLAPVKPPVTKLEWLEFSEPAAEVSEKKPSEAEERQHYR 155

Query: 212 GVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTAIEAARAYDRAAFQLRGSKAILNFPLEAG 271
           GVRRRPWGKYAAEIRDP RRG RVWLGTFDTAIEAA+AYDRAAF++R SKAILNFPLE G
Sbjct: 156 GVRRRPWGKYAAEIRDPKRRGSRVWLGTFDTAIEAAKAYDRAAFEMRRSKAILNFPLEVG 215

Query: 272 KCDSNAAVARECDSSAEAGACETKRKRDCESEEEERKAKVVKTESADT-----VNEFPLT 326
           K ++ AAVA       + G    KR R+ E   EE  AK  K+  +DT     +   PLT
Sbjct: 216 KSNNTAAVA-----PVDGG---RKRTREVEQTTEETPAKKEKSTESDTSVLSNLTTCPLT 267

Query: 327 PASCAAFWDLHLDWDCGVKGIFNAPLLSPLSPQPLM 362
           P+S          WD    GIFN P+LSPLSP P+M
Sbjct: 268 PSSWMTV------WDPSGSGIFNVPMLSPLSPHPMM 297

Source: Actinidia deliciosa

Species: Actinidia deliciosa

Genus: Actinidia

Family: Actinidiaceae

Order: Ericales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|292668893|gb|ADE41101.1| AP2 domain class transcription factor [Malus x domestica]

 Score =  209 bits (532), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 139/332 (41%), Positives = 177/332 (53%), Gaps = 72/332 (21%)

Query: 63  SALEFIEQHLFGENSPIAGFSSSLSSDTCS--QSQTSSSASSDRSF-------------- 106
           SALE I+ HL GE SP+  F+  LS    S  Q+Q S   +SD S               
Sbjct: 7   SALELIKHHLLGELSPVKSFAIELSDSASSFPQNQWSPEVNSDLSRSQSDSFCSKSSSTF 66

Query: 107 -----------------FNDAVFFDYESKPQIIDLVTPQPTNTCSELTNDFFEFDIRPQI 149
                            FN A FFD+E KPQ+IDL TP+ T+  S+ +   FEFD +PQ+
Sbjct: 67  ESSIEISDYLDSTDIFDFNSADFFDFEPKPQVIDLTTPKSTSLRSQSS---FEFDSKPQV 123

Query: 150 QSQPSNCSSEFEPKPKISPNSS---SQSSRKPSLKISVPKKAEGHHFTNRKSKA------ 200
               S+    FE KP+I   ++   +  +RKP+L IS+P K E   F +    A      
Sbjct: 124 ----SDDFFGFEQKPQILNQTAPKPANPTRKPALTISLPNKTEWIQFASSDQAAEKPAAV 179

Query: 201 -KPESSEEK--HYRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTAIEAARAYDRAAFQL 257
            K  S+EEK  HYRGVR+RPWGKYAAEIRDP RRG RVWLGTFDTAIEAARAYDRAAF+L
Sbjct: 180 QKVSSNEEKKKHYRGVRQRPWGKYAAEIRDPNRRGSRVWLGTFDTAIEAARAYDRAAFKL 239

Query: 258 RGSKAILNFPLEAGKCDSNAAVARECDSSAEAGACETKRKRDCESEEEERKAKVVKTESA 317
           RG+KAILNFPLEAGK +   +V R+          +                        
Sbjct: 240 RGAKAILNFPLEAGKAEPVVSVERKRRREERRDEAKEV-----------------VVVKK 282

Query: 318 DTVNEFPLTPASCAAFWDLHLDWDCGVKGIFN 349
           + + E PLTP+S  +FW+   +    VKG+F+
Sbjct: 283 EKLTETPLTPSSWMSFWESEKE---DVKGVFS 311

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224074205|ref|XP_002304300.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa] gi|222841732|gb|EEE79279.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa]

 Score =  207 bits (527), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 145/329 (44%), Positives = 184/329 (55%), Gaps = 80/329 (24%)

Query: 63  SALEFIEQHLFGEN-SPIAG-------FSSSLSSDTCSQSQTSSSASSDRS-----FF-- 107
           SALE I+QHL G+  SP+A        FS++ ++ T  Q +T+S +SSD S     FF  
Sbjct: 11  SALESIKQHLLGDLLSPVATSSASFYQFSTNSATSTSLQCETTSCSSSDFSTALPDFFGS 70

Query: 108 -------------NDAVFFDYESKPQIIDLVTPQPTNTCSELTNDFFEFDIRPQIQSQPS 154
                        N+   F++E KP+IIDL TP P N+ S +    F+        S  S
Sbjct: 71  LLEFTSVLSPSQENNTNIFEFEPKPEIIDLFTPTPLNSTSHIN---FQ-------SSSSS 120

Query: 155 NCSSEFEPKPKISPNSSSQSSRKPSLKISVP-KKAEGHHFTNRKSKAKPESSEE------ 207
             SS  +PKP++      Q++RK SLKIS+P KK E   F+   S   P++ E+      
Sbjct: 121 TGSSGGKPKPQV------QTARKRSLKISLPSKKPEWIQFS---SNPNPQTVEDNSGVAA 171

Query: 208 ---KHYRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTAIEAARAYDRAAFQLRGSKAIL 264
              +HYRGVRRRPWGKYAAEIRDP RRG RVWLGTFDT +EAA+AYDRAAF+LRGSKAIL
Sbjct: 172 QEIRHYRGVRRRPWGKYAAEIRDPNRRGSRVWLGTFDTDLEAAKAYDRAAFKLRGSKAIL 231

Query: 265 NFPLEAGKCDSNAAVARECDSSAEAGACETKRKRDCESEEEE---RKAKVVKTESADTVN 321
           NFPLEAG+C+  +               E KR R+   EE E   R   VVK E  +T  
Sbjct: 232 NFPLEAGRCEEES---------------ERKRSREGGVEEREDVKRVMTVVKREEPETEG 276

Query: 322 EFPLTPASCAAFWDLHLDWDCGVKGIFNA 350
           + PLTP+S  AFWD         K +FN 
Sbjct: 277 DIPLTPSSWTAFWD-----GGDTKDVFNV 300

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	364
TAIR|locus:2129106	282	ERF6 "AT4G17490" [Arabidopsis	0.326	0.421	0.5	1.5e-33
TAIR|locus:2151591	241	ERF104 "ethylene response fact	0.329	0.497	0.471	1.7e-31
TAIR|locus:2171529	300	ERF5 "ethylene responsive elem	0.744	0.903	0.357	4.2e-31
TAIR|locus:2176187	221	AT5G51190 [Arabidopsis thalian	0.354	0.583	0.492	3.3e-30
TAIR|locus:2151576	201	AT5G61590 [Arabidopsis thalian	0.184	0.333	0.611	1.1e-22
TAIR|locus:2129116	268	ERF-1 "ethylene responsive ele	0.288	0.391	0.450	3.7e-22
TAIR|locus:2171514	243	ERF2 "ethylene responsive elem	0.291	0.436	0.422	1.2e-19
TAIR|locus:2055002	226	ERF13 "ethylene-responsive ele	0.307	0.495	0.444	2.5e-19
TAIR|locus:2042496	243	ERF15 "ethylene-responsive ele	0.164	0.246	0.6	5e-19
UNIPROTKB|Q5MFV1	303	BIERF3 "BTH-induced ERF transc	0.197	0.237	0.555	1.7e-18

TAIR|locus:2129106 ERF6 "AT4G17490" [Arabidopsis thaliana (taxid:3702)]

 Score = 278 (102.9 bits), Expect = 1.5e-33, Sum P(2) = 1.5e-33
 Identities = 65/130 (50%), Positives = 73/130 (56%)

Query:   209 HYRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXXFQLRGSKAILNFPL 268
             HYRGVR RPWGK+AAEIRDPTRRG RVWLGTF+T            F+LRGSKAILNFPL
Sbjct:   136 HYRGVRMRPWGKFAAEIRDPTRRGTRVWLGTFETAIEAARAYDKEAFRLRGSKAILNFPL 195

Query:   269 EAGKCDSNAAVARECDSSAEAGACETKRKRDCESEEEERKAKVVKTESADTVNEFPLTPA 328
             E  K +  A   R             KRKRD E EE     KV+KTE +  V+      +
Sbjct:   196 EVDKWNPRAEDGR---------GLYNKRKRDGEEEEVTVVEKVLKTEESYDVSGGENVES 246

Query:   329 SCAAF--WDL 336
                A   WDL
Sbjct:   247 GLTAIDDWDL 256

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA;TAS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA;TAS

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0000302 "response to reactive oxygen species" evidence=IEP

GO:0005515 "protein binding" evidence=IPI

GO:0009644 "response to high light intensity" evidence=IMP

TAIR|locus:2151591 ERF104 "ethylene response factor 104" [Arabidopsis thaliana (taxid:3702)]

 Score = 285 (105.4 bits), Expect = 1.7e-31, Sum P(3) = 1.7e-31
 Identities = 65/138 (47%), Positives = 76/138 (55%)

Query:   209 HYRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXXFQLRGSKAILNFPL 268
             HYRGVRRRPWGKYAAEIRDP ++G R+WLGT+DT            FQLRG KAILNFPL
Sbjct:    87 HYRGVRRRPWGKYAAEIRDPNKKGCRIWLGTYDTAVEAGRAYDQAAFQLRGRKAILNFPL 146

Query:   269 EAGKCDSNAAVARECDSSAEAGACETKRKRDCESEEEERKAKVVKTESADT-VNE----- 322
             +          +  C      G    KRKRD  S  EE KA  VK E  ++  +E     
Sbjct:   147 DV------RVTSETCSGEGVIGL--GKRKRDKGSPPEEEKAARVKVEEEESNTSETTEAE 198

Query:   323 ----FPLTPASCAAFWDL 336
                  PLTP+S   FWD+
Sbjct:   199 VEPVVPLTPSSWMGFWDV 216

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0005515 "protein binding" evidence=IPI

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0050832 "defense response to fungus" evidence=IMP

GO:0009611 "response to wounding" evidence=RCA

GO:0009612 "response to mechanical stimulus" evidence=RCA

GO:0009693 "ethylene biosynthetic process" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

TAIR|locus:2171529 ERF5 "ethylene responsive element binding factor 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 342 (125.4 bits), Expect = 4.2e-31, P = 4.2e-31
 Identities = 108/302 (35%), Positives = 132/302 (43%)

Query:    56 MATPIEKSALEFIEQHLFGENSPIAGF----XXXXXXXXXXXXXXXXXXXXXXXFFNDAV 111
             MATP E SAL FIE+HL  E SP+A                              F    
Sbjct:     1 MATPNEVSALWFIEKHLLDEASPVATDPWMKHESSSATESSSDSSSIIFGSSSSSFAPID 60

Query:   112 FFDYESKPQIIDLVTPQPTNTCSELTNDFFEFDIRPQIQS---QPSNCS-SEFEXXXXXX 167
             F +   KP+IIDL TP+      E  +  FEFD    +     +PSN + ++FE      
Sbjct:    61 FSESVCKPEIIDLDTPRSM----EFLSIPFEFDSEVSVSDFDFKPSNQNQNQFEPELKSQ 116

Query:   168 XXXXXXXXXXXXXXXXVPKKAEGHHFTNRXXXXXXXXXXXXHYRGVRRRPWGKYAAEIRD 227
                             +   AE    T              HYRGVR+RPWGK+AAEIRD
Sbjct:   117 IRKPPLKISLPAKTEWIQFAAEN---TKPEVTKPVSEEEKKHYRGVRQRPWGKFAAEIRD 173

Query:   228 PTRRGVRVWLGTFDTXXXXXXXXXXXXFQLRGSKAILNFPLEAGKCDSNAAVARECDSSA 287
             P +RG RVWLGTFDT            F+LRGSKAILNFPLE GK    A          
Sbjct:   174 PNKRGSRVWLGTFDTAIEAARAYDEAAFRLRGSKAILNFPLEVGKWKPRA---------- 223

Query:   288 EAGACETKRKRDCESEEEERKAKVVKTESADTVNEFPLTPASCAAFWDLHLDWDCGVKGI 347
             + G  E KRKRD + E+     KV+KTE +  VN     P   +   +L  DWD  + G 
Sbjct:   224 DEG--EKKRKRD-DDEKVTVVEKVLKTEQSVDVNGGETFPFVTSNLTEL-CDWD--LTGF 277

Query:   348 FN 349
              N
Sbjct:   278 LN 279

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;IC;TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;IDA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA;TAS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0009409 "response to cold" evidence=IEP

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

TAIR|locus:2176187 AT5G51190 [Arabidopsis thaliana (taxid:3702)]

 Score = 312 (114.9 bits), Expect = 3.3e-30, Sum P(2) = 3.3e-30
 Identities = 68/138 (49%), Positives = 82/138 (59%)

Query:   209 HYRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXXFQLRGSKAILNFPL 268
             HYRGVRRRPWGKYAAEIRDP ++GVRVWLGTFDT            F+LRGSKAILNFPL
Sbjct:    71 HYRGVRRRPWGKYAAEIRDPNKKGVRVWLGTFDTAMEAARGYDKAAFKLRGSKAILNFPL 130

Query:   269 EAGKCDSNAAVARECDSSAEAGACETKRKRDCESEEEER-KAKVVKTESADT-VNEFPLT 326
             EAGK +       +   + +  + + KRKR    +E +    K VK E A    +  PLT
Sbjct:   131 EAGKHE-------DLGDNKKTISLKAKRKRQVTEDESQLISRKAVKREEAQVQADACPLT 183

Query:   327 PASCAAFWDLHLDWDCGV 344
             P+S   FWD     D G+
Sbjct:   184 PSSWKGFWDGADSKDMGI 201

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009612 "response to mechanical stimulus" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

TAIR|locus:2151576 AT5G61590 [Arabidopsis thaliana (taxid:3702)]

 Score = 238 (88.8 bits), Expect = 1.1e-22, Sum P(2) = 1.1e-22
 Identities = 41/67 (61%), Positives = 51/67 (76%)

Query:   209 HYRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXXFQLRGSKAILNFPL 268
             HYRGVRRRPWGK+AAEIRDP ++G R+WLGTF++            F+LRG KA+LNFPL
Sbjct:   106 HYRGVRRRPWGKFAAEIRDPAKKGSRIWLGTFESDIDAARAYDYAAFKLRGRKAVLNFPL 165

Query:   269 EAGKCDS 275
             +AGK D+
Sbjct:   166 DAGKYDA 172

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0009414 "response to water deprivation" evidence=IEP

TAIR|locus:2129116 ERF-1 "ethylene responsive element binding factor 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 225 (84.3 bits), Expect = 3.7e-22, Sum P(2) = 3.7e-22
 Identities = 50/111 (45%), Positives = 65/111 (58%)

Query:   209 HYRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXXFQLRGSKAILNFPL 268
             HYRGVR+RPWGK+AAEIRDP + G RVWLGTF+T            F++RGS+A+LNFPL
Sbjct:   147 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPL 206

Query:   269 E--AGKCDSNAAVARECD--SSAEAGACETKRKRDCESEEEERKAKVVKTE 315
                +G+ D     ++     SS E GA   K++R   +     K   VK E
Sbjct:   207 RVNSGEPDPVRIKSKRSSFSSSNENGA--PKKRRTVAAGGGMDKGLTVKCE 255

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;IDA

GO:0005643 "nuclear pore" evidence=ISS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

TAIR|locus:2171514 ERF2 "ethylene responsive element binding factor 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 234 (87.4 bits), Expect = 1.2e-19, P = 1.2e-19
 Identities = 46/109 (42%), Positives = 67/109 (61%)

Query:   209 HYRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXXFQLRGSKAILNFPL 268
             HYRGVR+RPWGK+AAEIRDP + G RVWLGTF+T            F++RGS+A+LNFPL
Sbjct:   116 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDIAAFRMRGSRALLNFPL 175

Query:   269 E--AGKCDSNAAVARECDSSAEAGACETKRKRDCESEEEERKAKVVKTE 315
                +G+ D     ++   SS+ + +  T    + + +   RKA+ + +E
Sbjct:   176 RVNSGEPDPVRITSKRSSSSSSSSSSSTSSSENGKLKRR-RKAENLTSE 223

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IDA;TAS

GO:0005634 "nucleus" evidence=ISM;TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;IDA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA;TAS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IMP;IDA

GO:0009864 "induced systemic resistance, jasmonic acid mediated signaling pathway" evidence=IMP

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0009693 "ethylene biosynthetic process" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

TAIR|locus:2055002 ERF13 "ethylene-responsive element binding factor 13" [Arabidopsis thaliana (taxid:3702)]

 Score = 231 (86.4 bits), Expect = 2.5e-19, P = 2.5e-19
 Identities = 52/117 (44%), Positives = 67/117 (57%)

Query:   210 YRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXXFQLRGSKAILNFPLE 269
             YRGVRRRPWGK+AAEIRDP + G RVWLGT++T            FQLRGSKA LNFP  
Sbjct:    92 YRGVRRRPWGKFAAEIRDPKKNGARVWLGTYETPEDAAVAYDRAAFQLRGSKAKLNFPHL 151

Query:   270 AGKCDSNAAVARECDSSAEAGACE---TKRKRDCESEEEERKAKVVKTESADTVNEF 323
              G C       R    S E    +   +++KR  ES  ++ ++ +V  E   TV++F
Sbjct:   152 IGSCKYEPVRIRPRRRSPEPSVSDQLTSEQKR--ESHVDDGESSLVVPELDFTVDQF 206

GO:0003677 "DNA binding" evidence=IEA;ISS;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;ISS;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA;TAS

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

TAIR|locus:2042496 ERF15 "ethylene-responsive element binding factor 15" [Arabidopsis thaliana (taxid:3702)]

 Score = 198 (74.8 bits), Expect = 5.0e-19, Sum P(2) = 5.0e-19
 Identities = 36/60 (60%), Positives = 41/60 (68%)

Query:   210 YRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXXFQLRGSKAILNFPLE 269
             YRGVR+RPWGK+AAEIRD TR G+RVWLGTFD             F  +GS A LNFP+E
Sbjct:    86 YRGVRKRPWGKFAAEIRDSTRNGIRVWLGTFDKAEEAALAYDQAAFATKGSLATLNFPVE 145

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0009507 "chloroplast" evidence=IDA

GO:0010200 "response to chitin" evidence=IEP

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA;TAS

UNIPROTKB|Q5MFV1 BIERF3 "BTH-induced ERF transcriptional factor 3" [Oryza sativa Indica Group (taxid:39946)]

 Score = 223 (83.6 bits), Expect = 1.7e-18, P = 1.7e-18
 Identities = 40/72 (55%), Positives = 50/72 (69%)

Query:   209 HYRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXXFQLRGSKAILNFPL 268
             HYRGVR+RPWGK+AAEIRDP + G RVWLGTFD+            +++RGS+A+LNFPL
Sbjct:   148 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFDSAEEAAVAYDRAAYRMRGSRALLNFPL 207

Query:   269 EAGKCDSNAAVA 280
               G   + AA A
Sbjct:   208 RIGSEIAAAAAA 219

GO:0009620 "response to fungus" evidence=IC

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	364
smart00380	64	smart00380, AP2, DNA-binding domain in plant prote	6e-33
cd00018	61	cd00018, AP2, DNA-binding domain found in transcri	2e-30
pfam00847	53	pfam00847, AP2, AP2 domain	5e-15

>gnl|CDD|197689 smart00380, AP2, DNA-binding domain in plant proteins such as APETALA2 and EREBPs

 Score =  116 bits (294), Expect = 6e-33
 Identities = 45/59 (76%), Positives = 49/59 (83%), Gaps = 1/59 (1%)

Query: 209 HYRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTAIEAARAYDRAAFQLRGSKAILNFP 267
            YRGVR+RPWGK+ AEIRDP  +G RVWLGTFDTA EAARAYDRAAF+ RG  A LNFP
Sbjct: 1   KYRGVRQRPWGKWVAEIRDP-SKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFP 58

Length = 64

>gnl|CDD|237985 cd00018, AP2, DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

 Score =  110 bits (277), Expect = 2e-30
 Identities = 45/60 (75%), Positives = 50/60 (83%), Gaps = 1/60 (1%)

Query: 208 KHYRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTAIEAARAYDRAAFQLRGSKAILNFP 267
             YRGVR+RPWGK+ AEIRDP   G R+WLGTFDTA EAARAYDRAA +LRGS A+LNFP
Sbjct: 1   SKYRGVRQRPWGKWVAEIRDP-SGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFP 59

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies. Length = 61

>gnl|CDD|216148 pfam00847, AP2, AP2 domain

 Score = 68.4 bits (168), Expect = 5e-15
 Identities = 27/54 (50%), Positives = 33/54 (61%), Gaps = 3/54 (5%)

Query: 208 KHYRGVRRRP-WGKYAAEIRDP-TRRGVRVWLGTFDTAIEAARAYDRAAFQLRG 259
             Y+GVR    WG++ AEIRDP  ++  R  LGTF T  EAARA   A  +LRG
Sbjct: 1   SGYKGVRYDKRWGRWVAEIRDPGEKKKKRFSLGTFGTE-EAARAAIAARLKLRG 53

This 60 amino acid residue domain can bind to DNA and is found in transcription factor proteins. Length = 53

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	364
cd00018	61	AP2 DNA-binding domain found in transcription regu	99.82
smart00380	64	AP2 DNA-binding domain in plant proteins such as A	99.8
PHA00280	121	putative NHN endonuclease	99.56
PF00847	56	AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-	99.23

>cd00018 AP2 DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

Probab=99.82  E-value=2.4e-20  Score=140.46  Aligned_cols=61  Identities=74%  Similarity=1.275  Sum_probs=56.9

Q ss_pred             CceeeeEEcCCCceEEEEecCCCCCeEEeecCCCCHHHHHHHHHHHHHHhcCCCCCCCCCCC
Q 047334          208 KHYRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTAIEAARAYDRAAFQLRGSKAILNFPLE  269 (364)
Q Consensus       208 SgYRGV~~r~~GKW~A~I~~~~k~Gkrv~LGtFdT~EEAArAYD~AA~k~~G~~A~lNFP~~  269 (364)
                      |+|+||+++++|||+|+|+++. .|+++|||+|+|+||||+|||.|+++++|.++.+|||++
T Consensus         1 s~~~GV~~~~~gkw~A~I~~~~-~gk~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~   61 (61)
T cd00018           1 SKYRGVRQRPWGKWVAEIRDPS-GGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFPDS   61 (61)
T ss_pred             CCccCEEECCCCcEEEEEEeCC-CCceEccCCCCCHHHHHHHHHHHHHHhcCCccccCCCCC
Confidence            6899999999999999999954 278999999999999999999999999999999999974

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies.

>smart00380 AP2 DNA-binding domain in plant proteins such as APETALA2 and EREBPs

Probab=99.80  E-value=1.8e-19  Score=137.44  Aligned_cols=63  Identities=71%  Similarity=1.212  Sum_probs=58.8

Q ss_pred             ceeeeEEcCCCceEEEEecCCCCCeEEeecCCCCHHHHHHHHHHHHHHhcCCCCCCCCCCCcCC
Q 047334          209 HYRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTAIEAARAYDRAAFQLRGSKAILNFPLEAGK  272 (364)
Q Consensus       209 gYRGV~~r~~GKW~A~I~~~~k~Gkrv~LGtFdT~EEAArAYD~AA~k~~G~~A~lNFP~~~~~  272 (364)
                      +|+||+++++|||+|+|+++. +|+++|||+|+|+||||+|||.|+.+++|.++.+|||.+.|.
T Consensus         1 ~~kGV~~~~~gkw~A~I~~~~-~~k~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~~y~   63 (64)
T smart00380        1 KYRGVRQRPWGKWVAEIRDPS-KGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPNSLYD   63 (64)
T ss_pred             CEeeEEeCCCCeEEEEEEecC-CCcEEecCCCCCHHHHHHHHHHHHHHhcCCccccCCCCccCC
Confidence            599999988999999999976 478999999999999999999999999999999999998774

>PHA00280 putative NHN endonuclease

Probab=99.56  E-value=5.7e-15  Score=127.48  Aligned_cols=64  Identities=16%  Similarity=0.134  Sum_probs=57.4

Q ss_pred             ccccCCCCCCCCCceeeeEEcC-CCceEEEEecCCCCCeEEeecCCCCHHHHHHHHHHHHHHhcCCCCC
Q 047334          196 RKSKAKPESSEEKHYRGVRRRP-WGKYAAEIRDPTRRGVRVWLGTFDTAIEAARAYDRAAFQLRGSKAI  263 (364)
Q Consensus       196 ~~~~~k~~~~ntSgYRGV~~r~-~GKW~A~I~~~~k~Gkrv~LGtFdT~EEAArAYD~AA~k~~G~~A~  263 (364)
                      |+.+++..++|+|||+||++++ .|||+|+|++   +||+++||.|+++|+|+.||+ ++.++||++|.
T Consensus        55 N~~N~~~~~~N~SG~kGV~~~k~~~kw~A~I~~---~gK~~~lG~f~~~e~A~~a~~-~~~~lhGeFa~  119 (121)
T PHA00280         55 NSWNMKTPKSNTSGLKGLSWSKEREMWRGTVTA---EGKQHNFRSRDLLEVVAWIYR-TRRELHGQFAR  119 (121)
T ss_pred             HhcccCCCCCCCCCCCeeEEecCCCeEEEEEEE---CCEEEEcCCCCCHHHHHHHHH-HHHHHhhcccc
Confidence            4556667889999999999877 7999999999   899999999999999999997 77889999985

>PF00847 AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-related genes transcriptional activator binds to the GCC-box pathogenesis-related promoter element and activates the plant's defence genes

Probab=99.23  E-value=2.3e-11  Score=89.49  Aligned_cols=53  Identities=34%  Similarity=0.444  Sum_probs=46.7

Q ss_pred             CceeeeEEcC-CCceEEEEecCCCCC--eEEeecCCCCHHHHHHHHHHHHHHhcCC
Q 047334          208 KHYRGVRRRP-WGKYAAEIRDPTRRG--VRVWLGTFDTAIEAARAYDRAAFQLRGS  260 (364)
Q Consensus       208 SgYRGV~~r~-~GKW~A~I~~~~k~G--krv~LGtFdT~EEAArAYD~AA~k~~G~  260 (364)
                      |+|+||++++ .++|+|+|++...+|  ++++||.|++++||++||+.++.+++|+
T Consensus         1 s~~~GV~~~~~~~~W~a~i~~~~~~g~~k~f~~g~fg~~~eA~~~a~~~r~~~~~e   56 (56)
T PF00847_consen    1 SGYKGVSWDKRRGRWRAQIRVWSENGKRKRFSVGKFGFEEEAKRAAIEARKELEGE   56 (56)
T ss_dssp             SSSTTEEEETTTTEEEEEEEECCCTTEEEEEEECCCCCHHHHHHHHHHHHHHCTS-
T ss_pred             CCcEEEEEcCCCCEEEEEEEEcccCcccEEEeCccCCCHHHHHHHHHHHHHHhcCC
Confidence            6899999887 799999999853333  8999999999999999999999999885

Ethylene, chemically the simplest plant hormone, participates in a number of stress responses and developmental processes: e.g., fruit ripening, inhibition of stem and root elongation, promotion of seed germination and flowering, senescence of leaves and flowers, and sex determination []. DNA sequence elements that confer ethylene responsiveness have been shown to contain two 11bp GCC boxes, which are necessary and sufficient for transcriptional control by ethylene. Ethylene responsive element binding proteins (EREBPs) have now been identified in a variety of plants. The proteins share a similar domain of around 59 amino acids, which interacts directly with the GCC box in the ERE.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3IGM_A 3GCC_A 1GCC_A 2GCC_A.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	364
2gcc_A	70	Solution Structure Of The Gcc-Box Binding Domain, N		3e-18
1gcc_A	63	Solution Nmr Structure Of The Complex Of Gcc-Box Bi		3e-18

>pdb|2GCC|A Chain A, Solution Structure Of The Gcc-Box Binding Domain, Nmr, Minimized Mean Structure Length = 70

Iteration: 1
 Score = 89.4 bits (220), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 37/60 (61%), Positives = 45/60 (75%)
Query: 209 HYRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXXFQLRGSKAILNFPL 268
           HYRGVR+RPWGK+AAEIRDP + G RVWLGTF+T            F++RGS+A+LNFPL
Sbjct: 5   HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPL 64

>pdb|1GCC|A Chain A, Solution Nmr Structure Of The Complex Of Gcc-Box Binding Domain Of Aterf1 And Gcc-Box Dna, Minimized Average Structure Length = 63

Iteration: 1
 Score = 89.0 bits (219), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 37/60 (61%), Positives = 45/60 (75%)
Query: 209 HYRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXXFQLRGSKAILNFPL 268
           HYRGVR+RPWGK+AAEIRDP + G RVWLGTF+T            F++RGS+A+LNFPL
Sbjct: 2   HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPL 61
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	364
1gcc_A	63	Ethylene responsive element binding factor 1; tran	2e-43

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A Length = 63

 Score =  144 bits (364), Expect = 2e-43
 Identities = 47/62 (75%), Positives = 56/62 (90%)

Query: 208 KHYRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTAIEAARAYDRAAFQLRGSKAILNFP 267
           KHYRGVR+RPWGK+AAEIRDP + G RVWLGTF+TA +AA AYDRAAF++RGS+A+LNFP
Sbjct: 1   KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFP 60

Query: 268 LE 269
           L 
Sbjct: 61  LR 62

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	364
1gcc_A	63	Ethylene responsive element binding factor 1; tran	99.91
3igm_B	77	PF14_0633 protein; AP2 domain, specific transcript	91.97

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A

Probab=99.91  E-value=8.8e-25  Score=167.17  Aligned_cols=63  Identities=75%  Similarity=1.350  Sum_probs=59.7

Q ss_pred             CceeeeEEcCCCceEEEEecCCCCCeEEeecCCCCHHHHHHHHHHHHHHhcCCCCCCCCCCCc
Q 047334          208 KHYRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTAIEAARAYDRAAFQLRGSKAILNFPLEA  270 (364)
Q Consensus       208 SgYRGV~~r~~GKW~A~I~~~~k~Gkrv~LGtFdT~EEAArAYD~AA~k~~G~~A~lNFP~~~  270 (364)
                      .+||||+++++|||+|+|+++.++|+++|||+|+|+||||+|||.|+++++|.+|.+|||.++
T Consensus         1 ~~yrGV~~r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~~   63 (63)
T 1gcc_A            1 KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLRV   63 (63)
T ss_dssp             CCCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTTC
T ss_pred             CCcccEeeCCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCcC
Confidence            379999999999999999999888999999999999999999999999999999999999863

>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}

Probab=91.97  E-value=0.088  Score=42.00  Aligned_cols=24  Identities=21%  Similarity=0.166  Sum_probs=20.5

Q ss_pred             CCCCceeeeEEcC-CCceEEEEecC
Q 047334          205 SEEKHYRGVRRRP-WGKYAAEIRDP  228 (364)
Q Consensus       205 ~ntSgYRGV~~r~-~GKW~A~I~~~  228 (364)
                      ..+|+|+||+|.+ .+.|.|.-.+.
T Consensus         3 ~~~Sg~pGVsw~kR~~~WlA~W~e~   27 (77)
T 3igm_B            3 HMSSGYPGVSWNKRMCAWLAFFYDG   27 (77)
T ss_dssp             -CCSSSTTEEEETTTTEEEEEEEET
T ss_pred             CCCCCCCcEEeecCCceEEEEEecC
Confidence            4579999999888 69999999984

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	364
d1gcca_	63	d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cr	6e-37

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 63

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  125 bits (316), Expect = 6e-37
 Identities = 47/62 (75%), Positives = 56/62 (90%)

Query: 208 KHYRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTAIEAARAYDRAAFQLRGSKAILNFP 267
           KHYRGVR+RPWGK+AAEIRDP + G RVWLGTF+TA +AA AYDRAAF++RGS+A+LNFP
Sbjct: 1   KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFP 60

Query: 268 LE 269
           L 
Sbjct: 61  LR 62

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	364
d1gcca_	63	GCC-box binding domain {Mouse-ear cress (Arabidops	99.91

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.91  E-value=2.7e-25  Score=168.99  Aligned_cols=62  Identities=74%  Similarity=1.355  Sum_probs=59.2

Q ss_pred             ceeeeEEcCCCceEEEEecCCCCCeEEeecCCCCHHHHHHHHHHHHHHhcCCCCCCCCCCCc
Q 047334          209 HYRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTAIEAARAYDRAAFQLRGSKAILNFPLEA  270 (364)
Q Consensus       209 gYRGV~~r~~GKW~A~I~~~~k~Gkrv~LGtFdT~EEAArAYD~AA~k~~G~~A~lNFP~~~  270 (364)
                      +||||+++++|||+|+|+++.++|+++|||+|+|+||||+|||+||++++|.+|.+|||++.
T Consensus         2 ~yrGVr~r~~gkw~A~Ir~~~~~~~r~~LGtf~t~eeAArAYD~aa~~~~G~~a~~NFP~~~   63 (63)
T d1gcca_           2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLRV   63 (63)
T ss_dssp             CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTTC
T ss_pred             CcceEeECCCCCEEEEEecCCCCCcEeccccccCHHHHHHHHHHHHHHhcCCCcccCCCccC
Confidence            69999999999999999998888999999999999999999999999999999999999863