Citrus Sinensis ID: 047387

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------24
Protein Sequence
MDSSFCFQYPYSQFSPEYSSSSYSHNTNNSLESFTYKTFNNFHNNHQYLPFNENDSQEMLLLEVLNQASANSMHTISSTSNNNNIKDDHEVSSRAVNATEEGPLKEVSYRGVRRRPWGKYAAEIRDSTRNGVRVWIGTFDTAEAAALAYDQAAFAMRGTTAVLNFPVEKVYESLLEMKYDFEVGSSPVLTLKKRHSMKRKGESKKKIKEKEMRLENVVVFEDLGTEYLEELLSISDSTC
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccEEEEEccccHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHccccEEEcccccHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccEEEEEEEcccccEEEEEEcccccccEEEEcccccHHHHHHHHHHHHHHHccccEEEcccHHHHccccccccccccccccHHHHHHHHccHcccccccccEEccccccccEEEEccccHHHHHHHHccccccc
Coil and Loop (DISEMBL)
mdssfcfqypysqfspeyssssyshntnnslesftyktfnnfhnnhqylpfnendSQEMLLLEVLNQAsansmhtisstsnnnnikddhevssravnateegplkevsyrgvrrrpwgkyAAEIRDSTRNGVRVWIGTFDTAEAAALAYDQAAFAMRGTTAVLNFPVEKVYESLLEMKydfevgsspvltlkkrhsmkrkgeSKKKIKEKEMRLENVVVFEDLGTEYLEELLSISDSTC
Flexible Loop (DISEMBL)
MDSSFCFQYPYSQFSPEYSSSSYSHNTNNSLESFTYKTFNNFHNNHQYLPFNENDSQEMLLLEVLNQASANSMHTIsstsnnnnikdDHEVSsravnateegplkevsyrgvrrrpwgkyaaeirdstrngvRVWIGTFDTAEAAALAYDQAAFAMRGTTAVLNFPVEKVYESLLEMKYDfevgsspvltlkkrhsmkrkgeskkkikekemrlenvvVFEDLGTEYLEellsisdstc
Low Complexity Region (SEG)
MDSSFCFqypysqfspeyssssysHNTNNSLESFTYKTFNNFHNNHQYLPFNENDSQEMLLLEVLNQASANSMHtisstsnnnniKDDHEVSSRAVNATEEGPLKEVSYRGVRRRPWGKYAAEIRDSTRNGVRVWIGTFDTaeaaalaydqaafaMRGTTAVLNFPVEKVYESLLEMKYDFEVGSSPVLTLKKRHSMkrkgeskkkikekeMRLENVVVFEDLGTEYLEELLSISDSTC
Disordered region (IsUnstruct)
*****CFQYP**********************SFTYKTFNNFHNNHQYLPFNE*****MLLLEV********************************************YRGVRRRPWGKYAAEIRDSTRNGVRVWIGTFDTAEAAALAYDQAAFAMRGTTAVLNFPVEKVYESLLEMKYDFEVGSS*V*************************LENVVVFEDLGTEYLEELL*******
Disordered Region (DISOPRED)
*DSSFCFQYP******************************NFHN*HQYLPFNENDSQEMLLL*************************************************VRRRPWGKYAAEIRDSTRNGVRVWIGTFDTAEAAALAYDQAAFAMRGTTAVLNFPVEK************************************************VVFEDLGTEYLEELLSISD***
Disordered Region (DISEMBL)
MDSSFCFQYPYSQFSP**********TNNSLESFTYKTFNNFHNNHQYLPFNENDSQEMLLLEVLNQASANSMHTISSTSNNNNIKDDHEVSSRAVNATEEGPLKEVSYRGVRRRPWGKYAAEIRDSTRNGVRVWIGTFDTAEAAALAYDQAAFAMRGTTAVLNFPVEKVYESLLEMKYDFEVGSSPVLTLK***************KEKEMRLENVVVFEDLGTEYLEELLSISDSTC
Disordered Region (DISPRO)
*************FS***************LESFTYKTFNNFHNNHQYLPFNENDSQEMLLLEVLNQASA***********************************EVSYRGVRRRPWGKYAAEIRDSTRNGVRVWIGTFDTAEAAALAYDQAAFAMRGTTAVLNFPVEKVYESLLEMKYD*************************KIKEK*MRLENVVVFEDLGTEYLEELLS******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDSSFCFQYPYSQFSPEYSSSSYSHNTNNSLESFTYKTFNNFHNNHQYLPFNENDSQEMLLLEVLNQASANSMHTISSTSNNNNIKDDHEVSSRAVNATEEGPLKEVSYRGVRRRPWGKYAAEIRDSTRNGVRVWIGTFDTAEAAALAYDQAAFAMRGTTAVLNFPVEKVYESLLEMKYDFEVGSSPVLTLKKRHSMKRKGESKKKIKEKEMRLENVVVFEDLGTEYLEELLSISDSTC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	239	2.2.26 [Sep-21-2011]
Q8LDC8	218	Ethylene-responsive trans	yes	no	0.870	0.954	0.508	3e-55
Q8VYM0	243	Ethylene-responsive trans	no	no	0.602	0.592	0.483	5e-37
O04681	161	Pathogenesis-related gene	N/A	no	0.464	0.689	0.549	1e-30
Q9LND1	244	Ethylene-responsive trans	no	no	0.523	0.512	0.506	2e-29
O80338	243	Ethylene-responsive trans	no	no	0.510	0.502	0.467	6e-26
Q8L9K1	226	Ethylene-responsive trans	no	no	0.594	0.628	0.422	5e-25
O80337	268	Ethylene-responsive trans	no	no	0.539	0.481	0.42	5e-25
Q40479	233	Ethylene-responsive trans	N/A	no	0.493	0.506	0.418	3e-24
Q9LW50	237	Ethylene-responsive trans	N/A	no	0.493	0.497	0.418	8e-24
Q84XB3	244	Ethylene-responsive trans	N/A	no	0.493	0.483	0.456	2e-23

>sp|Q8LDC8|ERF92_ARATH Ethylene-responsive transcription factor 1B OS=Arabidopsis thaliana GN=ERF1B PE=1 SV=2

 Score =  215 bits (547), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 121/238 (50%), Positives = 160/238 (67%), Gaps = 30/238 (12%)

Query: 5   FCFQYPYSQFSPEYSSSSYSHNTNNSLESFTYKTFNNFHNNHQYLPFNENDSQEMLLLEV 64
           F  Q P+S FSPEYS  S   + ++S             +N+  LPFNENDS+EM L  +
Sbjct: 4   FLIQSPFSGFSPEYSIGSSPDSFSSS------------SSNNYSLPFNENDSEEMFLYGL 51

Query: 65  LNQASANSMHTISSTSNNNNIKDDHEVSSRAVNATEEGPLKEVSYRGVRRRPWGKYAAEI 124
           + Q++  +   I S S +  IK    VSSR           E SYRGVRRRPWGK+AAEI
Sbjct: 52  IEQSTQQTY--IDSDSQDLPIKS---VSSRK---------SEKSYRGVRRRPWGKFAAEI 97

Query: 125 RDSTRNGVRVWIGTFDTAEAAALAYDQAAFAMRGTTAVLNFPVEKVYESLLEMKYDFEVG 184
           RDSTRNG+RVW+GTF++AE AALAYDQAAF+MRG++A+LNF  E+V ESL E+KY +E G
Sbjct: 98  RDSTRNGIRVWLGTFESAEEAALAYDQAAFSMRGSSAILNFSAERVQESLSEIKYTYEDG 157

Query: 185 SSPVLTLKKRHSMKRKGESKK----KIKEKEMRLENVVVFEDLGTEYLEELLSISDST 238
            SPV+ LK++HSM+R+  +KK        + ++L+NVVVFEDLG +YLEELL  S+++
Sbjct: 158 CSPVVALKRKHSMRRRMTNKKTKDSDFDHRSVKLDNVVVFEDLGEQYLEELLGSSENS 215

Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression during the plant development, and/or mediated by stress factors and by components of stress signal transduction pathways. Seems to be a key integrator of ethylene and jasmonate signals in the regulation of ethylene/jasmonate-dependent defenses. Can mediate resistance to necrotizing fungi (Botrytis cinerea and Plectosphaerella cucumerina) and to soil borne fungi (Fusarium oxysporum conglutinans and Fusiarium oxysporum lycopersici), but probably not to necrotizing bacteria (Pseudomonas syringae tomato).
Arabidopsis thaliana (taxid: 3702)

>sp|Q8VYM0|ERF93_ARATH Ethylene-responsive transcription factor 15 OS=Arabidopsis thaliana GN=ERF15 PE=2 SV=1

 Score =  154 bits (389), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 86/178 (48%), Positives = 113/178 (63%), Gaps = 34/178 (19%)

Query: 89  HEVSSRAVNATEE----GPLKEVSYRGVRRRPWGKYAAEIRDSTRNGVRVWIGTFDTAEA 144
            E+ +  V+ +EE    G  +E SYRGVR+RPWGK+AAEIRDSTRNG+RVW+GTFD AE 
Sbjct: 62  EEIQNGDVSNSEEEEKVGIDEERSYRGVRKRPWGKFAAEIRDSTRNGIRVWLGTFDKAEE 121

Query: 145 AALAYDQAAFAMRGTTAVLNFPVEKVYESLLEMK-YDFEVGSSPVLTLKKRHSMKRKGES 203
           AALAYDQAAFA +G+ A LNFPVE V ESL +M+  +   G SPV+ LK++HS++ +   
Sbjct: 122 AALAYDQAAFATKGSLATLNFPVEVVRESLKKMENVNLHDGGSPVMALKRKHSLRNRPRG 181

Query: 204 KKKI---------------------------KEKEMRLEN--VVVFEDLGTEYLEELL 232
           KK+                            K+  ++ E+  +VVFEDLG EYLE+LL
Sbjct: 182 KKRSSSSSSSSSNSSSCSSSSSTSSTSRSSSKQSVVKQESGTLVVFEDLGAEYLEQLL 239

May act as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|O04681|PTI5_SOLLC Pathogenesis-related genes transcriptional activator PTI5 OS=Solanum lycopersicum GN=PTI5 PE=2 SV=1

 Score =  133 bits (334), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 72/131 (54%), Positives = 87/131 (66%), Gaps = 20/131 (15%)

Query: 49  LPFNENDSQEMLLLEVLNQASANSMHTISSTSN---NNNIKDDHEVSSRAVNATEEGPLK 105
           LP NENDSQEM+L EVLN+A+A ++  +   +     NNI                 PL+
Sbjct: 9   LPLNENDSQEMVLYEVLNEANALNIPYLPQRNQLLPRNNILR---------------PLQ 53

Query: 106 EVS--YRGVRRRPWGKYAAEIRDSTRNGVRVWIGTFDTAEAAALAYDQAAFAMRGTTAVL 163
            +   YRGVRRRPWGKYAAEIRDS R+G RVW+GTF+TAE AALAYD+AAF MRG  A+L
Sbjct: 54  CIGKKYRGVRRRPWGKYAAEIRDSARHGARVWLGTFETAEEAALAYDRAAFRMRGAKALL 113

Query: 164 NFPVEKVYESL 174
           NFP E V  S+
Sbjct: 114 NFPSEIVNASV 124

Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Activates plants defense genes. Can confer resistance to Pseudomonas syringae tomato by potentiating the transcription of a set of pathogenesis related genes, downstream to a defense signaling pathway involving PTO and PRF, but probably independent of ethylene, jasmonate and salicylic acid.

Solanum lycopersicum (taxid: 4081)

>sp|Q9LND1|ERF94_ARATH Ethylene-responsive transcription factor ERF094 OS=Arabidopsis thaliana GN=ERF094 PE=2 SV=1

 Score =  129 bits (323), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 81/160 (50%), Positives = 100/160 (62%), Gaps = 35/160 (21%)

Query: 108 SYRGVRRRPWGKYAAEIRDSTRNGVRVWIGTFDTAEAAALAYDQAAFAMRGTTAVLNFPV 167
           SYRGVR+RPWGK+AAEIRDSTR G+RVW+GTFDTAEAAALAYDQAAFA++G+ AVLNFP 
Sbjct: 81  SYRGVRKRPWGKFAAEIRDSTRKGIRVWLGTFDTAEAAALAYDQAAFALKGSLAVLNFPA 140

Query: 168 EKVYESLLEMK-YDFEVGSSPVLTLKKRHSMKRKGESKKKIKEKE--------------- 211
           + V ESL +M+  +   G SPV+ LK++HSM+ +   KKK                    
Sbjct: 141 DVVEESLRKMENVNLNDGESPVIALKRKHSMRNRPRGKKKSSSSSTLTSSPSSSSSYSSS 200

Query: 212 ----------------MRLEN---VVVFEDLGTEYLEELL 232
                           M  E+   +VV EDLG EYLEEL+
Sbjct: 201 SSSSSLSSRSRKQSVVMTQESNTTLVVLEDLGAEYLEELM 240

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Acts as an essential integrator of the JA and ethylene signal transduction pathways. Activates the expression of the PDF1.2A gene.

Arabidopsis thaliana (taxid: 3702)

>sp|O80338|EF101_ARATH Ethylene-responsive transcription factor 2 OS=Arabidopsis thaliana GN=ERF2 PE=2 SV=1

 Score =  117 bits (294), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 65/139 (46%), Positives = 84/139 (60%), Gaps = 17/139 (12%)

Query: 42  FHNNHQYLPFNENDSQEMLLLEVLNQASANSMHTISSTSNNNNIKDDHEVSSRAV---NA 98
           F  +   LP  ENDS++ML+  +L  A     H  +S+S+ + + D   V         A
Sbjct: 41  FTESWGGLPLKENDSEDMLVYGLLKDA----FHFDTSSSDLSCLFDFPAVKVEPTENFTA 96

Query: 99  TEEGPLKEVS----------YRGVRRRPWGKYAAEIRDSTRNGVRVWIGTFDTAEAAALA 148
            EE P K +           YRGVR+RPWGK+AAEIRD  +NG RVW+GTF+TAE AALA
Sbjct: 97  MEEKPKKAIPVTETAVKAKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALA 156

Query: 149 YDQAAFAMRGTTAVLNFPV 167
           YD AAF MRG+ A+LNFP+
Sbjct: 157 YDIAAFRMRGSRALLNFPL 175

Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Involved in disease resistance pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8L9K1|ERF99_ARATH Ethylene-responsive transcription factor 13 OS=Arabidopsis thaliana GN=ERF13 PE=2 SV=2

 Score =  114 bits (286), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 65/154 (42%), Positives = 90/154 (58%), Gaps = 12/154 (7%)

Query: 19  SSSSYSHNTNNSLESFTYKTFNN--FHNNHQYLPFNENDSQEMLLLEVLNQASAN----S 72
           SSS   +N  NS   F   +F+N   ++N   LP + +DSQ+M +   L  A ++    S
Sbjct: 2   SSSDSVNNGVNSRMYFRNPSFSNVILNDNWSDLPLSVDDSQDMAIYNTLRDAVSSGWTPS 61

Query: 73  MHTISSTSNNNNIKDDHEVSSRAVNATEEGPLKEVSYRGVRRRPWGKYAAEIRDSTRNGV 132
           +  ++S +  N         S A         K + YRGVRRRPWGK+AAEIRD  +NG 
Sbjct: 62  VPPVTSPAEENKPPATKASGSHAPRQ------KGMQYRGVRRRPWGKFAAEIRDPKKNGA 115

Query: 133 RVWIGTFDTAEAAALAYDQAAFAMRGTTAVLNFP 166
           RVW+GT++T E AA+AYD+AAF +RG+ A LNFP
Sbjct: 116 RVWLGTYETPEDAAVAYDRAAFQLRGSKAKLNFP 149

Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|O80337|EF100_ARATH Ethylene-responsive transcription factor 1A OS=Arabidopsis thaliana GN=ERF1A PE=1 SV=2

 Score =  114 bits (286), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 63/150 (42%), Positives = 85/150 (56%), Gaps = 21/150 (14%)

Query: 37  KTFNNFHNNHQYLPFNENDSQEMLLLEVLNQA-------------------SANSMHTIS 77
           K +  F  +   LP  ENDS++ML+  +LN A                    +  + T  
Sbjct: 59  KLYPCFTESWGDLPLKENDSEDMLVYGILNDAFHGGWEPSSSSSDEDRSSFPSVKIETPE 118

Query: 78  STSNNNNIKDDHEVSSRAVNATEEGPLKEVSYRGVRRRPWGKYAAEIRDSTRNGVRVWIG 137
           S +  +++    E +S    A      K   YRGVR+RPWGK+AAEIRD  +NG RVW+G
Sbjct: 119 SFAAVDSVPVKKEKTSPVSAAVTAA--KGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLG 176

Query: 138 TFDTAEAAALAYDQAAFAMRGTTAVLNFPV 167
           TF+TAE AALAYD+AAF MRG+ A+LNFP+
Sbjct: 177 TFETAEDAALAYDRAAFRMRGSRALLNFPL 206

Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q40479|ERF2_TOBAC Ethylene-responsive transcription factor 2 OS=Nicotiana tabacum GN=ERF2 PE=2 SV=1

 Score =  112 bits (279), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 54/129 (41%), Positives = 76/129 (58%), Gaps = 11/129 (8%)

Query: 49  LPFNENDSQEMLLLEVLNQASANSMHTISSTSNNNNIKDDHEVSSRAVNATEEGPLKEVS 108
           LP   +DS++M++  +L+ A        + TS     +   E+    +      P  E +
Sbjct: 28  LPLKVDDSEDMVIYGLLSDALTAGWTPFNLTSTEIKAEPREEIEPATIPVPSVAPPAETT 87

Query: 109 -----------YRGVRRRPWGKYAAEIRDSTRNGVRVWIGTFDTAEAAALAYDQAAFAMR 157
                      YRGVR+RPWGK+AAEIRD  +NG RVW+GT++TAE AALAYD+AA+ MR
Sbjct: 88  TAQAVVPKGRHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEEAALAYDKAAYRMR 147

Query: 158 GTTAVLNFP 166
           G+ A+LNFP
Sbjct: 148 GSKALLNFP 156

Acts as a transcriptional activator and may be involved in disease resistance pathways. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase cascade, and to be influenced by methyl-jasmonate.

Nicotiana tabacum (taxid: 4097)

>sp|Q9LW50|ERF2_NICSY Ethylene-responsive transcription factor 2 OS=Nicotiana sylvestris GN=ERF2 PE=2 SV=1

 Score =  110 bits (275), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 54/129 (41%), Positives = 75/129 (58%), Gaps = 11/129 (8%)

Query: 49  LPFNENDSQEMLLLEVLNQASANSMHTISSTSNNNNIKDDHEVSSRAVNATEEGPLKEVS 108
           LP   +DS++M++  +L+ A        + TS     +   E+           P  E +
Sbjct: 32  LPLKVDDSEDMVIYGLLSDALTTGWTPFNLTSTEIKAEPREEIEPATSPVPSVAPPAETT 91

Query: 109 -----------YRGVRRRPWGKYAAEIRDSTRNGVRVWIGTFDTAEAAALAYDQAAFAMR 157
                      YRGVR+RPWGK+AAEIRD  +NG RVW+GT++TAE AALAYD+AA+ MR
Sbjct: 92  TAQAVVPKGRHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEEAALAYDKAAYRMR 151

Query: 158 GTTAVLNFP 166
           G+ A+LNFP
Sbjct: 152 GSKALLNFP 160

Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional activator.

Nicotiana sylvestris (taxid: 4096)

>sp|Q84XB3|ERF1_SOLLC Ethylene-responsive transcription factor 1 OS=Solanum lycopersicum GN=ERF1 PE=2 SV=1

 Score =  109 bits (272), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 57/125 (45%), Positives = 77/125 (61%), Gaps = 7/125 (5%)

Query: 49  LPFNENDSQEMLLLEVLNQASANSMHTISSTSNNNNIKDDHEVS---SRAVNATEEGPL- 104
           LP   NDS++M++   L  A +      + TS    ++   E+    S +V+     P  
Sbjct: 40  LPLKVNDSEDMVIYGFLQDAFSIGWTPSNLTSEEVKLEPREEIEPAMSTSVSPPTVAPAA 99

Query: 105 ---KEVSYRGVRRRPWGKYAAEIRDSTRNGVRVWIGTFDTAEAAALAYDQAAFAMRGTTA 161
              K   YRGVR+RPWGK+AAEIRD  +NG RVW+GT+++AE AALAY +AAF MRGT A
Sbjct: 100 LQPKGRHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYESAEEAALAYGKAAFRMRGTKA 159

Query: 162 VLNFP 166
           +LNFP
Sbjct: 160 LLNFP 164

Involved in the regulation of gene expression during fruit ripening, by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Probably acts as a transcriptional activator and may be involved in disease resistance pathways.

Solanum lycopersicum (taxid: 4081)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	239
255561909	224	Ethylene-responsive transcription factor	0.924	0.986	0.613	3e-63
324388031	234	ethylene-responsive transcription factor	0.903	0.923	0.562	3e-62
326367386	234	ethylene-responsive transcription factor	0.903	0.923	0.562	7e-62
224123518	225	AP2/ERF domain-containing transcription	0.786	0.835	0.695	1e-61
300079016	216	ethylene response factor 10 [Actinidia d	0.899	0.995	0.567	9e-61
167600644	234	putative protein [Coffea canephora]	0.903	0.923	0.565	1e-59
359488029	460	PREDICTED: uncharacterized protein LOC10	0.824	0.428	0.610	6e-59
224144537	225	AP2/ERF domain-containing transcription	0.782	0.831	0.658	4e-56
350535226	245	ethylene responsive element binding prot	0.799	0.779	0.565	1e-53
15229405	218	ethylene-responsive transcription factor	0.870	0.954	0.508	1e-53

>gi|255561909|ref|XP_002521963.1| Ethylene-responsive transcription factor 1B, putative [Ricinus communis] gi|223538767|gb|EEF40367.1| Ethylene-responsive transcription factor 1B, putative [Ricinus communis]

 Score =  247 bits (630), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 146/238 (61%), Positives = 180/238 (75%), Gaps = 17/238 (7%)

Query: 1   MDSSFCFQYPYSQFSPEYSSSSYSHNTNNSLESFTYKTFNNFHNNHQYLPFNENDSQEML 60
           MDSSF F Y  SQ+SP+ SSS+  +++++            F+   Q LPFNENDS+EML
Sbjct: 1   MDSSF-FHYQNSQYSPDQSSSNSLNSSDS------------FYC-QQPLPFNENDSEEML 46

Query: 61  LLEVLNQASANSMHTISSTSNNNNIKDDHEVSSRAVNATEEGPLKEVSYRGVRRRPWGKY 120
           LL V+N+A  +S  TISS+   N I +  EV+S      EE   +E++YRGVR+RPWGKY
Sbjct: 47  LLGVINEAPISSFDTISSS---NAINNYEEVTSTGGYYQEEPTHQEIAYRGVRKRPWGKY 103

Query: 121 AAEIRDSTRNGVRVWIGTFDTAEAAALAYDQAAFAMRGTTAVLNFPVEKVYESLLEMKYD 180
           AAEIRDSTRNGVRVW+GTFDTAEAAALAYDQAAFAMRG+ A+LNFP+EKVYESL EM Y+
Sbjct: 104 AAEIRDSTRNGVRVWLGTFDTAEAAALAYDQAAFAMRGSMAILNFPMEKVYESLQEMNYE 163

Query: 181 FEVGSSPVLTLKKRHSMKRKGESKKKIKEKEMRLENVVVFEDLGTEYLEELLSISDST 238
           F+ G SPVL +KK+HSMKRK ESKK    KE+R+ENVVV EDLG +YLEELL+IS++ 
Sbjct: 164 FKEGCSPVLAMKKKHSMKRKAESKKTKGNKELRMENVVVLEDLGADYLEELLTISETV 221

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|324388031|gb|ADY38793.1| ethylene-responsive transcription factor [Coffea arabica]

 Score =  244 bits (622), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 139/247 (56%), Positives = 168/247 (68%), Gaps = 31/247 (12%)

Query: 1   MDSSFCFQYPYSQFSPEYSSSS--YSHNTNNSLESFTYKTFNNFHNNHQYLPFNENDSQE 58
           MD S   Q+ +++F PE S+SS  Y +N+ +   S               LPFNENDSQE
Sbjct: 1   MDYSSFPQHSFAEFPPESSASSSMYCYNSQHCQSS---------------LPFNENDSQE 45

Query: 59  MLLLEVLNQA--SANSMHTISSTSNNNNIKDDHEVSSRAVNATEEGPLKEVSYRGVRRRP 116
           MLL  V+++A  S NSM   SS+     IK++ E + +  N  +E P+ +VSYRGVRRRP
Sbjct: 46  MLLARVISEAAGSGNSMDAPSSS----RIKEEEECAQQ--NDYDE-PMNQVSYRGVRRRP 98

Query: 117 WGKYAAEIRDSTRNGVRVWIGTFDTAEAAALAYDQAAFAMRGTTAVLNFPVEKVYESLLE 176
           WGKYAAEIRDSTRNGVRVWIGTFDTAE AAL YDQAAFA+RG  AVLNFPVE VYESL +
Sbjct: 99  WGKYAAEIRDSTRNGVRVWIGTFDTAEEAALVYDQAAFALRGHAAVLNFPVEVVYESLKQ 158

Query: 177 MKYDFEVGSSPVLTLKKRHSMKRKGESKKKIKEKEMRLE-----NVVVFEDLGTEYLEEL 231
           M+Y FE G SPVL +KKRHSM R+    KK  +  M L+     NV+V EDLGT+YLEEL
Sbjct: 159 MQYGFEEGCSPVLVMKKRHSMNRRNALSKKRSQVLMGLDDDNNNNVLVLEDLGTDYLEEL 218

Query: 232 LSISDST 238
           L  S+ST
Sbjct: 219 LGASEST 225

Source: Coffea arabica

Species: Coffea arabica

Genus: Coffea

Family: Rubiaceae

Order: Gentianales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326367386|gb|ADZ55304.1| ethylene-responsive transcription factor [Coffea arabica]

 Score =  243 bits (619), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 139/247 (56%), Positives = 169/247 (68%), Gaps = 31/247 (12%)

Query: 1   MDSSFCFQYPYSQFSPEYSSSS--YSHNTNNSLESFTYKTFNNFHNNHQYLPFNENDSQE 58
           MD S   Q+ +++FSPE S+SS  Y +N+ +   S               LPFNENDSQE
Sbjct: 1   MDYSSFPQHSFAEFSPEGSASSSMYCYNSQHCQSS---------------LPFNENDSQE 45

Query: 59  MLLLEVLNQA--SANSMHTISSTSNNNNIKDDHEVSSRAVNATEEGPLKEVSYRGVRRRP 116
           MLL  V+++A  S NSM   SS+     IK++ E + +  N  +E P+ +VSYRGVRRRP
Sbjct: 46  MLLARVISEAAGSGNSMDAPSSS----RIKEEEEYTQQ--NYYDE-PMNQVSYRGVRRRP 98

Query: 117 WGKYAAEIRDSTRNGVRVWIGTFDTAEAAALAYDQAAFAMRGTTAVLNFPVEKVYESLLE 176
           WGKYAAEIRDSTRNGVRVWIGTFD+AE AAL YDQAAFA+RG  AVLNFPVE VYESL +
Sbjct: 99  WGKYAAEIRDSTRNGVRVWIGTFDSAEEAALVYDQAAFALRGHAAVLNFPVEVVYESLKQ 158

Query: 177 MKYDFEVGSSPVLTLKKRHSMKRKGESKKKIKEKEMRLE-----NVVVFEDLGTEYLEEL 231
           M+Y FE G SPVL +KKRHSM R+    KK  +  M L+     NV+V EDLGT+YLEEL
Sbjct: 159 MQYGFEEGCSPVLVMKKRHSMNRRNALSKKRSQVLMGLDDDNNNNVLVLEDLGTDYLEEL 218

Query: 232 LSISDST 238
           L  S+ST
Sbjct: 219 LGASEST 225

Source: Coffea arabica

Species: Coffea arabica

Genus: Coffea

Family: Rubiaceae

Order: Gentianales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224123518|ref|XP_002319099.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa] gi|222857475|gb|EEE95022.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa]

 Score =  241 bits (616), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 139/200 (69%), Positives = 161/200 (80%), Gaps = 12/200 (6%)

Query: 41  NFHNNHQYLPFNENDSQEMLLLEVLNQASANSMHTISSTSNNNNIKDDHEVSSRAVNATE 100
           NF++  Q LPFNENDSQEMLLL +LN+A  NS  T SST++N +     EVSSRA    E
Sbjct: 33  NFYS--QPLPFNENDSQEMLLLGLLNEAPINSFDTTSSTNSNYD-----EVSSRADYQGE 85

Query: 101 EGPLKEVSYRGVRRRPWGKYAAEIRDSTRNGVRVWIGTFDTAEAAALAYDQAAFAMRGTT 160
           +   +E+SYRGVRRRPWGKYAAEIRDSTRNGVRVW+GTFDTAEAAALAYDQAAFAMRG+ 
Sbjct: 86  QP--REISYRGVRRRPWGKYAAEIRDSTRNGVRVWLGTFDTAEAAALAYDQAAFAMRGSM 143

Query: 161 AVLNFPVEKVYESLLEMKYDFEVGSSPVLTLKKRHSMKRKGESKKKIKEKEMR--LENVV 218
           AVLNFP +KVYESL E  Y F+ G SP+L +KKRHSM RK ES+K+ KEKE+R  +ENVV
Sbjct: 144 AVLNFPAQKVYESLKETGYGFQEGQSPILAMKKRHSMNRKAESRKR-KEKEIRTEMENVV 202

Query: 219 VFEDLGTEYLEELLSISDST 238
           V EDLG EYLEELL+IS+S 
Sbjct: 203 VLEDLGAEYLEELLAISESA 222

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|300079016|gb|ADJ67439.1| ethylene response factor 10 [Actinidia deliciosa]

 Score =  239 bits (609), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 134/236 (56%), Positives = 168/236 (71%), Gaps = 21/236 (8%)

Query: 1   MDSSFCFQYPYSQFSPEYSSSSYSHNTNNSLESFTYKTFNNFHNNHQYLPFNENDSQEML 60
           M+S F  QYPY   SPE S          S +SF++     +HN+   LPFN NDS+EML
Sbjct: 1   MNSQFT-QYPYLDDSPESSL--------GSPQSFSWDDLLFYHNS---LPFNVNDSEEML 48

Query: 61  LLEVLNQ-ASANSMHTISSTSNNNNIKDDHEVSSRAVNATEEGPLKEVSYRGVRRRPWGK 119
           LL VL + AS  S  TISS      IK++ EV+S    A ++ P+KE SYRGVRRRPWGK
Sbjct: 49  LLGVLAEGASKESSETISS----GGIKEE-EVTS---VAKDQKPIKEKSYRGVRRRPWGK 100

Query: 120 YAAEIRDSTRNGVRVWIGTFDTAEAAALAYDQAAFAMRGTTAVLNFPVEKVYESLLEMKY 179
           +AAEIRDSTRNG+RVW+GTFD+AE AALAYDQAAF++RG+ AVLNFPVE+V +SL EMKY
Sbjct: 101 FAAEIRDSTRNGIRVWLGTFDSAEEAALAYDQAAFSVRGSMAVLNFPVERVKDSLREMKY 160

Query: 180 DFEVGSSPVLTLKKRHSMKRKGESKKKIKEKEMRLENVVVFEDLGTEYLEELLSIS 235
             E G SPV+ LKKRHSM+ +   K+    KE+++++VV+ EDLG EYLEELL+ S
Sbjct: 161 GCEEGCSPVVALKKRHSMRERSSYKRNKANKEVKVDHVVILEDLGAEYLEELLNSS 216

Source: Actinidia deliciosa

Species: Actinidia deliciosa

Genus: Actinidia

Family: Actinidiaceae

Order: Ericales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|167600644|gb|ABZ89186.1| putative protein [Coffea canephora]

 Score =  235 bits (599), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 133/235 (56%), Positives = 164/235 (69%), Gaps = 19/235 (8%)

Query: 11  YSQFSPEYSSSSYSHNTNNSLESFTYKTFNNFHNNHQYLPFNENDSQEMLLLEVLNQA-- 68
           YS F P++S + +S  ++ S   + Y    N  +    LPFNENDSQEMLL  V+++A  
Sbjct: 3   YSSF-PQHSFAEFSPESSASSSMYCY----NSQHCQSSLPFNENDSQEMLLARVISEAAG 57

Query: 69  SANSMHTISSTSNNNNIKDDHEVSSRAVNATEEGPLKEVSYRGVRRRPWGKYAAEIRDST 128
           S NSM   SS+     IK++ E + +  N  +E P+ +V+YRGVRRRPWGKYAAEIRDST
Sbjct: 58  SGNSMDAPSSS----RIKEEEECTQQ--NDYDE-PMNQVNYRGVRRRPWGKYAAEIRDST 110

Query: 129 RNGVRVWIGTFDTAEAAALAYDQAAFAMRGTTAVLNFPVEKVYESLLEMKYDFEVGSSPV 188
           RNGVRVWIGTFD+AE AAL YDQAAFA+RG  AVLNFPVE VYESL +M+Y FE G SPV
Sbjct: 111 RNGVRVWIGTFDSAEEAALVYDQAAFALRGHAAVLNFPVEVVYESLKQMQYGFEEGCSPV 170

Query: 189 LTLKKRHSMKRKGESKKKIKEKEMRLE-----NVVVFEDLGTEYLEELLSISDST 238
           L +KKRHSM R+    KK  +  M L+     NV+V EDLGT+YLEELL  S+ST
Sbjct: 171 LVMKKRHSMNRRNALSKKRSQVLMGLDDDNNNNVLVLEDLGTDYLEELLGASEST 225

Source: Coffea canephora

Species: Coffea canephora

Genus: Coffea

Family: Rubiaceae

Order: Gentianales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359488029|ref|XP_002268634.2| PREDICTED: uncharacterized protein LOC100246190 [Vitis vinifera]

 Score =  233 bits (593), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 141/231 (61%), Positives = 161/231 (69%), Gaps = 34/231 (14%)

Query: 2   DSSFCFQYPYSQFSPEYSSSSYSHNTNNSLESFTYKTFNNFHNNHQYLPFNENDSQEMLL 61
           DSSF F    SQFSPE S  S                  +F + H  LPF++NDS+EMLL
Sbjct: 3   DSSF-FHNSNSQFSPESSLGS-----------------PDFFSFHDPLPFDQNDSEEMLL 44

Query: 62  LEVLNQASANSMHTISSTSNNNNIKDDHEVSSRAVNATEEGPLKEVSYRGVRRRPWGKYA 121
             VL++A A+  +               EV S+ V A EE P+KEVSYRGVR+RPWGKYA
Sbjct: 45  YGVLSEAVADDSYM------------KEEVCSK-VKAIEEEPMKEVSYRGVRKRPWGKYA 91

Query: 122 AEIRDSTRNGVRVWIGTFDTAEAAALAYDQAAFAMRGTTAVLNFPVEKVYESLLEMKYDF 181
           AEIRDSTRNGVRVW+GTFDTAEAAALAYDQAAFAMRG+ AVLNFP + VYESL EMKY F
Sbjct: 92  AEIRDSTRNGVRVWLGTFDTAEAAALAYDQAAFAMRGSLAVLNFPADMVYESLREMKYGF 151

Query: 182 EVGSSPVLTLKKRHSMKRKGESKKKIKEKEMRLENVVVFEDLGTEYLEELL 232
           + G SPVL LKKRHS+K K    +K KEKE+RLENVV FEDLGT+YLEELL
Sbjct: 152 QEGCSPVLALKKRHSIKNKS---RKRKEKELRLENVVEFEDLGTDYLEELL 199

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224144537|ref|XP_002325325.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa] gi|222862200|gb|EEE99706.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa]

 Score =  223 bits (569), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 131/199 (65%), Positives = 155/199 (77%), Gaps = 12/199 (6%)

Query: 41  NFHNNHQYLPFNENDSQEMLLLEVLNQASANSMHTISSTSNNNNIKDDHEVSSRAVNATE 100
           NF++  Q LPFNENDSQEMLL  V N+   NS  T SST+ N +     E SSRA N  E
Sbjct: 33  NFYS--QPLPFNENDSQEMLLSGVPNEPPINSFDTSSSTNTNYD-----EASSRA-NYQE 84

Query: 101 EGPLKEVSYRGVRRRPWGKYAAEIRDSTRNGVRVWIGTFDTAEAAALAYDQAAFAMRGTT 160
           E P +E++YRGVRRRPWGKYAAEIRDSTR  VRVW+GTFDTAEAAALAYDQAAF +RG+ 
Sbjct: 85  EPP-QEIAYRGVRRRPWGKYAAEIRDSTRKHVRVWLGTFDTAEAAALAYDQAAFTIRGSM 143

Query: 161 AVLNFPVEKVYESLLEMKYDFEVGSSPVLTLKKRHSMKRKGESKKKIKEKEMR--LENVV 218
           AVLNFPV+KVYESL +M Y F+ G SP++ +KKRHSM RK ES+K+ KEK  R  +ENVV
Sbjct: 144 AVLNFPVQKVYESLQQMGYGFQEGQSPIVAMKKRHSMNRKAESRKR-KEKGTRIGMENVV 202

Query: 219 VFEDLGTEYLEELLSISDS 237
           V EDLG +YLE+LL+IS+S
Sbjct: 203 VLEDLGADYLEDLLTISES 221

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350535226|ref|NP_001234695.1| ethylene responsive element binding protein [Solanum lycopersicum] gi|25992126|gb|AAN77067.1| ethylene responsive element binding protein [Solanum lycopersicum]

 Score =  215 bits (548), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 116/205 (56%), Positives = 144/205 (70%), Gaps = 14/205 (6%)

Query: 39  FNNFHNNHQYLPFNENDSQEMLLLEVLNQASANSMHTISSTSNNNNIKDDHEVSSRAVNA 98
           ++NF N   YLPFN NDS+EMLL  VLN A      T S T  ++ +K   E  +     
Sbjct: 27  WSNF-NTQSYLPFNVNDSEEMLLFGVLNAAHE---ETTSETVTSHRVK--EEEVTSESEV 80

Query: 99  TEEGPLKEVSYRGVRRRPWGKYAAEIRDSTRNGVRVWIGTFDTAEAAALAYDQAAFAMRG 158
            E  P KE SYRGVRRRPWGK+AAEIRDSTRNGVRVW+GTFD+AE AALAYDQAAF+MRG
Sbjct: 81  IEAIPAKEKSYRGVRRRPWGKFAAEIRDSTRNGVRVWLGTFDSAEDAALAYDQAAFSMRG 140

Query: 159 TTAVLNFPVEKVYESLLEMKYDFEVGSSPVLTLKKRHSMKRKGESKKKIKE-----KEMR 213
            +A+LNFPVE V +SL +MK   +   SPV+ LKKRHSM+++  + KK+       +E++
Sbjct: 141 NSAILNFPVETVRDSLRDMKCHVDDDCSPVVALKKRHSMRKRSTNSKKVNSISKVVREVK 200

Query: 214 LE---NVVVFEDLGTEYLEELLSIS 235
           +E   NVVVFEDLG +YLE+LLS S
Sbjct: 201 MENVNNVVVFEDLGADYLEQLLSTS 225

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15229405|ref|NP_188965.1| ethylene-responsive transcription factor 1B [Arabidopsis thaliana] gi|57012702|sp|Q8LDC8.2|ERF92_ARATH RecName: Full=Ethylene-responsive transcription factor 1B; Short=AtERF1B; AltName: Full=Ethylene-responsive element-binding factor 1B; Short=EREBP-1B gi|16226399|gb|AAL16158.1|AF428390_1 AT3g23240/K14B15_13 [Arabidopsis thaliana] gi|4128208|gb|AAD03544.1| ethylene response factor 1 [Arabidopsis thaliana] gi|4128210|gb|AAD03545.1| ethylene response factor 1 [Arabidopsis thaliana] gi|7939534|dbj|BAA95737.1| ethylene response DNA binding protein-like [Arabidopsis thaliana] gi|22137228|gb|AAM91459.1| AT3g23240/K14B15_13 [Arabidopsis thaliana] gi|332643217|gb|AEE76738.1| ethylene-responsive transcription factor 1B [Arabidopsis thaliana]

 Score =  215 bits (547), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 121/238 (50%), Positives = 160/238 (67%), Gaps = 30/238 (12%)

Query: 5   FCFQYPYSQFSPEYSSSSYSHNTNNSLESFTYKTFNNFHNNHQYLPFNENDSQEMLLLEV 64
           F  Q P+S FSPEYS  S   + ++S             +N+  LPFNENDS+EM L  +
Sbjct: 4   FLIQSPFSGFSPEYSIGSSPDSFSSS------------SSNNYSLPFNENDSEEMFLYGL 51

Query: 65  LNQASANSMHTISSTSNNNNIKDDHEVSSRAVNATEEGPLKEVSYRGVRRRPWGKYAAEI 124
           + Q++  +   I S S +  IK    VSSR           E SYRGVRRRPWGK+AAEI
Sbjct: 52  IEQSTQQTY--IDSDSQDLPIKS---VSSRK---------SEKSYRGVRRRPWGKFAAEI 97

Query: 125 RDSTRNGVRVWIGTFDTAEAAALAYDQAAFAMRGTTAVLNFPVEKVYESLLEMKYDFEVG 184
           RDSTRNG+RVW+GTF++AE AALAYDQAAF+MRG++A+LNF  E+V ESL E+KY +E G
Sbjct: 98  RDSTRNGIRVWLGTFESAEEAALAYDQAAFSMRGSSAILNFSAERVQESLSEIKYTYEDG 157

Query: 185 SSPVLTLKKRHSMKRKGESKK----KIKEKEMRLENVVVFEDLGTEYLEELLSISDST 238
            SPV+ LK++HSM+R+  +KK        + ++L+NVVVFEDLG +YLEELL  S+++
Sbjct: 158 CSPVVALKRKHSMRRRMTNKKTKDSDFDHRSVKLDNVVVFEDLGEQYLEELLGSSENS 215

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	239
TAIR|locus:2086223	218	ERF1 "ethylene response factor	0.782	0.857	0.429	7.8e-39
TAIR|locus:2038500	244	ORA59 "octadecanoid-responsive	0.439	0.430	0.513	4.7e-29
TAIR|locus:2042496	243	ERF15 "ethylene-responsive ele	0.451	0.444	0.495	5.9e-29
TAIR|locus:2129116	268	ERF-1 "ethylene responsive ele	0.246	0.220	0.559	5.8e-20
TAIR|locus:2124504	303	AT4G18450 [Arabidopsis thalian	0.301	0.237	0.540	1.5e-19
TAIR|locus:2086203	139	ESE1 "ethylene and salt induci	0.263	0.453	0.587	8.1e-19
UNIPROTKB|Q5MFV1	303	BIERF3 "BTH-induced ERF transc	0.246	0.194	0.559	3.1e-18
TAIR|locus:2171514	243	ERF2 "ethylene responsive elem	0.744	0.732	0.305	1.2e-17
TAIR|locus:2055002	226	ERF13 "ethylene-responsive ele	0.585	0.619	0.347	1.6e-17
TAIR|locus:2018289	133	ERF14 "Ethylene-responsive ele	0.280	0.503	0.567	1.8e-16

TAIR|locus:2086223 ERF1 "ethylene response factor 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 415 (151.1 bits), Expect = 7.8e-39, P = 7.8e-39
 Identities = 88/205 (42%), Positives = 127/205 (61%)

Query:    38 TFNNFHNNHQYLPFNENDSQEMLLLEVLNQASANSMHXXXXXXXXXXXKDDHEVSSRAVN 97
             +F++  +N+  LPFNENDS+EM L  ++ Q++  +              D  ++  ++V+
Sbjct:    25 SFSSSSSNNYSLPFNENDSEEMFLYGLIEQSTQQTY----------IDSDSQDLPIKSVS 74

Query:    98 ATEEGPLKEVSYRGVRRRPWGKYAAEIRDSTRNGVRVWIGTFDTXXXXXXXXXXXXXXMR 157
             + +     E SYRGVRRRPWGK+AAEIRDSTRNG+RVW+GTF++              MR
Sbjct:    75 SRKS----EKSYRGVRRRPWGKFAAEIRDSTRNGIRVWLGTFESAEEAALAYDQAAFSMR 130

Query:   158 GTTAVLNFPVEKVYESLLEMKYDFEVGSSPVLTLKKRHSMXXXXXXXXXXXXX----XMR 213
             G++A+LNF  E+V ESL E+KY +E G SPV+ LK++HSM                  ++
Sbjct:   131 GSSAILNFSAERVQESLSEIKYTYEDGCSPVVALKRKHSMRRRMTNKKTKDSDFDHRSVK 190

Query:   214 LENVVVFEDLGTEYLEELLSISDST 238
             L+NVVVFEDLG +YLEELL  S+++
Sbjct:   191 LDNVVVFEDLGEQYLEELLGSSENS 215

GO:0003677 "DNA binding" evidence=IEA;IDA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0006952 "defense response" evidence=IMP

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=TAS

GO:0009873 "ethylene mediated signaling pathway" evidence=IGI;TAS

TAIR|locus:2038500 ORA59 "octadecanoid-responsive Arabidopsis AP2/ERF 59" [Arabidopsis thaliana (taxid:3702)]

 Score = 276 (102.2 bits), Expect = 4.7e-29, Sum P(2) = 4.7e-29
 Identities = 56/109 (51%), Positives = 71/109 (65%)

Query:    90 EVSSRAVNATEEGPLKEVSYRGVRRRPWGKYAAEIRDSTRNGVRVWIGTFDTXXXXXXXX 149
             E    A  A EE   +E SYRGVR+RPWGK+AAEIRDSTR G+RVW+GTFDT        
Sbjct:    66 EEGKEATVAAEE---EEKSYRGVRKRPWGKFAAEIRDSTRKGIRVWLGTFDTAEAAALAY 122

Query:   150 XXXXXXMRGTTAVLNFPVEKVYESLLEMK-YDFEVGSSPVLTLKKRHSM 197
                   ++G+ AVLNFP + V ESL +M+  +   G SPV+ LK++HSM
Sbjct:   123 DQAAFALKGSLAVLNFPADVVEESLRKMENVNLNDGESPVIALKRKHSM 171

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0009723 "response to ethylene stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0009861 "jasmonic acid and ethylene-dependent systemic resistance" evidence=IMP

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA;TAS

TAIR|locus:2042496 ERF15 "ethylene-responsive element binding factor 15" [Arabidopsis thaliana (taxid:3702)]

 Score = 269 (99.8 bits), Expect = 5.9e-29, Sum P(2) = 5.9e-29
 Identities = 56/113 (49%), Positives = 74/113 (65%)

Query:    90 EVSSRAVNATEE----GPLKEVSYRGVRRRPWGKYAAEIRDSTRNGVRVWIGTFDTXXXX 145
             E+ +  V+ +EE    G  +E SYRGVR+RPWGK+AAEIRDSTRNG+RVW+GTFD     
Sbjct:    63 EIQNGDVSNSEEEEKVGIDEERSYRGVRKRPWGKFAAEIRDSTRNGIRVWLGTFDKAEEA 122

Query:   146 XXXXXXXXXXMRGTTAVLNFPVEKVYESLLEMK-YDFEVGSSPVLTLKKRHSM 197
                        +G+ A LNFPVE V ESL +M+  +   G SPV+ LK++HS+
Sbjct:   123 ALAYDQAAFATKGSLATLNFPVEVVRESLKKMENVNLHDGGSPVMALKRKHSL 175

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0009507 "chloroplast" evidence=IDA

GO:0010200 "response to chitin" evidence=IEP

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA;TAS

TAIR|locus:2129116 ERF-1 "ethylene responsive element binding factor 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 189 (71.6 bits), Expect = 5.8e-20, Sum P(2) = 5.8e-20
 Identities = 33/59 (55%), Positives = 41/59 (69%)

Query:   109 YRGVRRRPWGKYAAEIRDSTRNGVRVWIGTFDTXXXXXXXXXXXXXXMRGTTAVLNFPV 167
             YRGVR+RPWGK+AAEIRD  +NG RVW+GTF+T              MRG+ A+LNFP+
Sbjct:   148 YRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPL 206

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;IDA

GO:0005643 "nuclear pore" evidence=ISS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

TAIR|locus:2124504 AT4G18450 [Arabidopsis thaliana (taxid:3702)]

 Score = 192 (72.6 bits), Expect = 1.5e-19, Sum P(2) = 1.5e-19
 Identities = 40/74 (54%), Positives = 48/74 (64%)

Query:   105 KEVSYRGVRRRPWGKYAAEIRDSTRNGVRVWIGTFDTXXXXXXXXXXXXXXMRGTT-AVL 163
             K   YRGVR+RPWGK+AAEIRDSTRNGVRVW+GTF T              +RGT  A  
Sbjct:   106 KTRKYRGVRKRPWGKFAAEIRDSTRNGVRVWLGTFQTAEEAAMAYDKAAVRIRGTQKAHT 165

Query:   164 NFPVEKVYESLLEM 177
             NF +E V +++ EM
Sbjct:   166 NFQLETVIKAM-EM 178

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0010200 "response to chitin" evidence=IEP

GO:0006457 "protein folding" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=TAS

TAIR|locus:2086203 ESE1 "ethylene and salt inducible 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 203 (76.5 bits), Expect = 8.1e-19, Sum P(2) = 8.1e-19
 Identities = 37/63 (58%), Positives = 43/63 (68%)

Query:   106 EVSYRGVRRRPWGKYAAEIRDSTRNGVRVWIGTFDTXXXXXXXXXXXXXXMRGTTAVLNF 165
             E+ YRGVR+RPWGKYAAEIRDS R+G RVW+GTF+T              MRG  A+LNF
Sbjct:    11 EMKYRGVRKRPWGKYAAEIRDSARHGARVWLGTFNTAEDAARAYDRAAFGMRGQRAILNF 70

Query:   166 PVE 168
             P E
Sbjct:    71 PHE 73

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;ISS;TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0009873 "ethylene mediated signaling pathway" evidence=TAS

UNIPROTKB|Q5MFV1 BIERF3 "BTH-induced ERF transcriptional factor 3" [Oryza sativa Indica Group (taxid:39946)]

 Score = 189 (71.6 bits), Expect = 3.1e-18, Sum P(2) = 3.1e-18
 Identities = 33/59 (55%), Positives = 41/59 (69%)

Query:   109 YRGVRRRPWGKYAAEIRDSTRNGVRVWIGTFDTXXXXXXXXXXXXXXMRGTTAVLNFPV 167
             YRGVR+RPWGK+AAEIRD  +NG RVW+GTFD+              MRG+ A+LNFP+
Sbjct:   149 YRGVRQRPWGKFAAEIRDPAKNGARVWLGTFDSAEEAAVAYDRAAYRMRGSRALLNFPL 207

GO:0009620 "response to fungus" evidence=IC

TAIR|locus:2171514 ERF2 "ethylene responsive element binding factor 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 215 (80.7 bits), Expect = 1.2e-17, P = 1.2e-17
 Identities = 61/200 (30%), Positives = 89/200 (44%)

Query:    49 LPFNENDSQEMLLLEVLNQA-----SANSMHXXXXXXXXXXXKDDH-----EVSSRAVNA 98
             LP  ENDS++ML+  +L  A     S++ +              ++     E   +A+  
Sbjct:    48 LPLKENDSEDMLVYGLLKDAFHFDTSSSDLSCLFDFPAVKVEPTENFTAMEEKPKKAIPV 107

Query:    99 TEEGPLKEVSYRGVRRRPWGKYAAEIRDSTRNGVRVWIGTFDTXXXXXXXXXXXXXXMRG 158
             TE   +K   YRGVR+RPWGK+AAEIRD  +NG RVW+GTF+T              MRG
Sbjct:   108 TETA-VKAKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDIAAFRMRG 166

Query:   159 TTAVLNFPVEKVYESLLEMKYDFEVGSSPVLTLKKRHSMXXXXXXXXXXXXXXMRLENVV 218
             + A+LNFP+ +V                PV    KR S                +L+   
Sbjct:   167 SRALLNFPL-RVNSG----------EPDPVRITSKRSSSSSSSSSSSTSSSENGKLKRRR 215

Query:   219 VFEDLGTEYLEELLSISDST 238
               E+L +E ++    + D T
Sbjct:   216 KAENLTSEVVQVKCEVGDET 235

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IDA;TAS

GO:0005634 "nucleus" evidence=ISM;TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;IDA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA;TAS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IMP;IDA

GO:0009864 "induced systemic resistance, jasmonic acid mediated signaling pathway" evidence=IMP

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0009693 "ethylene biosynthetic process" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

TAIR|locus:2055002 ERF13 "ethylene-responsive element binding factor 13" [Arabidopsis thaliana (taxid:3702)]

 Score = 214 (80.4 bits), Expect = 1.6e-17, P = 1.6e-17
 Identities = 50/144 (34%), Positives = 76/144 (52%)

Query:    25 HNTNNSLESFTYKTFNN--FHNNHQYLPFNENDSQEMLLLEVLNQASANSMHXXXXXXXX 82
             +N  NS   F   +F+N   ++N   LP + +DSQ+M +   L  A  +S          
Sbjct:     8 NNGVNSRMYFRNPSFSNVILNDNWSDLPLSVDDSQDMAIYNTLRDA-VSSGWTPSVPPVT 66

Query:    83 XXXKDDHEVSSRAVNATEEGPLKEVSYRGVRRRPWGKYAAEIRDSTRNGVRVWIGTFDTX 142
                +++   +++A + +     K + YRGVRRRPWGK+AAEIRD  +NG RVW+GT++T 
Sbjct:    67 SPAEENKPPATKA-SGSHAPRQKGMQYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYETP 125

Query:   143 XXXXXXXXXXXXXMRGTTAVLNFP 166
                          +RG+ A LNFP
Sbjct:   126 EDAAVAYDRAAFQLRGSKAKLNFP 149

GO:0003677 "DNA binding" evidence=IEA;ISS;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;ISS;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA;TAS

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

TAIR|locus:2018289 ERF14 "Ethylene-responsive element binding factor 14" [Arabidopsis thaliana (taxid:3702)]

 Score = 204 (76.9 bits), Expect = 1.8e-16, P = 1.8e-16
 Identities = 38/67 (56%), Positives = 44/67 (65%)

Query:   102 GPLKEVSYRGVRRRPWGKYAAEIRDSTRNGVRVWIGTFDTXXXXXXXXXXXXXXMRGTTA 161
             G  ++  YRGVRRRPWGKYAAEIRDS ++G RVW+GTFDT              MRG  A
Sbjct:    13 GGAEQGKYRGVRRRPWGKYAAEIRDSRKHGERVWLGTFDTAEDAARAYDRAAYSMRGKAA 72

Query:   162 VLNFPVE 168
             +LNFP E
Sbjct:    73 ILNFPHE 79

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0009873 "ethylene mediated signaling pathway" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8LDC8	ERF92_ARATH	No assigned EC number	0.5084	0.8702	0.9541	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	239
smart00380	64	smart00380, AP2, DNA-binding domain in plant prote	3e-33
cd00018	61	cd00018, AP2, DNA-binding domain found in transcri	1e-30
pfam00847	53	pfam00847, AP2, AP2 domain	3e-13

>gnl|CDD|197689 smart00380, AP2, DNA-binding domain in plant proteins such as APETALA2 and EREBPs

 Score =  114 bits (287), Expect = 3e-33
 Identities = 41/60 (68%), Positives = 48/60 (80%), Gaps = 1/60 (1%)

Query: 108 SYRGVRRRPWGKYAAEIRDSTRNGVRVWIGTFDTAEAAALAYDQAAFAMRGTTAVLNFPV 167
            YRGVR+RPWGK+ AEIRD ++ G RVW+GTFDTAE AA AYD+AAF  RG +A LNFP 
Sbjct: 1   KYRGVRQRPWGKWVAEIRDPSK-GKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPN 59

Length = 64

>gnl|CDD|237985 cd00018, AP2, DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

 Score =  107 bits (270), Expect = 1e-30
 Identities = 40/59 (67%), Positives = 48/59 (81%), Gaps = 1/59 (1%)

Query: 109 YRGVRRRPWGKYAAEIRDSTRNGVRVWIGTFDTAEAAALAYDQAAFAMRGTTAVLNFPV 167
           YRGVR+RPWGK+ AEIRD    G R+W+GTFDTAE AA AYD+AA  +RG++AVLNFP 
Sbjct: 3   YRGVRQRPWGKWVAEIRDP-SGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFPD 60

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies. Length = 61

>gnl|CDD|216148 pfam00847, AP2, AP2 domain

 Score = 61.9 bits (151), Expect = 3e-13
 Identities = 23/52 (44%), Positives = 29/52 (55%), Gaps = 3/52 (5%)

Query: 109 YRGVRRRP-WGKYAAEIRD-STRNGVRVWIGTFDTAEAAALAYDQAAFAMRG 158
           Y+GVR    WG++ AEIRD   +   R  +GTF T EAA  A   A   +RG
Sbjct: 3   YKGVRYDKRWGRWVAEIRDPGEKKKKRFSLGTFGTEEAAR-AAIAARLKLRG 53

This 60 amino acid residue domain can bind to DNA and is found in transcription factor proteins. Length = 53

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	239
cd00018	61	AP2 DNA-binding domain found in transcription regu	99.85
smart00380	64	AP2 DNA-binding domain in plant proteins such as A	99.84
PHA00280	121	putative NHN endonuclease	99.47
PF00847	56	AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-	99.27
PF14657	46	Integrase_AP2: AP2-like DNA-binding integrase doma	83.53

>cd00018 AP2 DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

Probab=99.85  E-value=2.1e-21  Score=138.69  Aligned_cols=61  Identities=66%  Similarity=1.183  Sum_probs=56.7

Q ss_pred             CceeEEEeCCCCcEEEEeecCCCCCeEEeeccCCcHHHHHHHHHHHHHHccCCCCCCCCCch
Q 047387          107 VSYRGVRRRPWGKYAAEIRDSTRNGVRVWIGTFDTAEAAALAYDQAAFAMRGTTAVLNFPVE  168 (239)
Q Consensus       107 s~YRGVr~r~~GKW~AeIr~~~~~Gkri~LGtFdT~EEAArAYD~AA~~~~G~~A~lNFp~~  168 (239)
                      |+|+||+++++|||+|+|+++. .|+++|||+|+|+||||+|||.|+++++|..+.+|||++
T Consensus         1 s~~~GV~~~~~gkw~A~I~~~~-~gk~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~   61 (61)
T cd00018           1 SKYRGVRQRPWGKWVAEIRDPS-GGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFPDS   61 (61)
T ss_pred             CCccCEEECCCCcEEEEEEeCC-CCceEccCCCCCHHHHHHHHHHHHHHhcCCccccCCCCC
Confidence            6899999999999999999843 289999999999999999999999999999999999963

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies.

>smart00380 AP2 DNA-binding domain in plant proteins such as APETALA2 and EREBPs

Probab=99.84  E-value=2.5e-21  Score=140.08  Aligned_cols=63  Identities=65%  Similarity=1.110  Sum_probs=59.1

Q ss_pred             ceeEEEeCCCCcEEEEeecCCCCCeEEeeccCCcHHHHHHHHHHHHHHccCCCCCCCCCchhHH
Q 047387          108 SYRGVRRRPWGKYAAEIRDSTRNGVRVWIGTFDTAEAAALAYDQAAFAMRGTTAVLNFPVEKVY  171 (239)
Q Consensus       108 ~YRGVr~r~~GKW~AeIr~~~~~Gkri~LGtFdT~EEAArAYD~AA~~~~G~~A~lNFp~~~y~  171 (239)
                      +|+||+++++|||+|+|+++. +|+++|||+|+|+||||+|||.|+++++|..+.+|||.+.|+
T Consensus         1 ~~kGV~~~~~gkw~A~I~~~~-~~k~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~~y~   63 (64)
T smart00380        1 KYRGVRQRPWGKWVAEIRDPS-KGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPNSLYD   63 (64)
T ss_pred             CEeeEEeCCCCeEEEEEEecC-CCcEEecCCCCCHHHHHHHHHHHHHHhcCCccccCCCCccCC
Confidence            589999999999999999865 489999999999999999999999999999999999998875

>PHA00280 putative NHN endonuclease

Probab=99.47  E-value=9.1e-14  Score=113.66  Aligned_cols=60  Identities=13%  Similarity=0.151  Sum_probs=53.5

Q ss_pred             cCCCCCCCceeEEEeCCC-CcEEEEeecCCCCCeEEeeccCCcHHHHHHHHHHHHHHccCCCCCC
Q 047387          100 EEGPLKEVSYRGVRRRPW-GKYAAEIRDSTRNGVRVWIGTFDTAEAAALAYDQAAFAMRGTTAVL  163 (239)
Q Consensus       100 ~~~~~~~s~YRGVr~r~~-GKW~AeIr~~~~~Gkri~LGtFdT~EEAArAYD~AA~~~~G~~A~l  163 (239)
                      +..+.++|+|+||++++. |||+|+|+.   +||+++||.|+|+|+|+.||+ ++.+++|++|..
T Consensus        60 ~~~~~N~SG~kGV~~~k~~~kw~A~I~~---~gK~~~lG~f~~~e~A~~a~~-~~~~lhGeFa~~  120 (121)
T PHA00280         60 KTPKSNTSGLKGLSWSKEREMWRGTVTA---EGKQHNFRSRDLLEVVAWIYR-TRRELHGQFARF  120 (121)
T ss_pred             CCCCCCCCCCCeeEEecCCCeEEEEEEE---CCEEEEcCCCCCHHHHHHHHH-HHHHHhhccccC
Confidence            345678999999998765 999999998   899999999999999999997 788999999853

>PF00847 AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-related genes transcriptional activator binds to the GCC-box pathogenesis-related promoter element and activates the plant's defence genes

Probab=99.27  E-value=1.1e-11  Score=86.39  Aligned_cols=53  Identities=32%  Similarity=0.451  Sum_probs=46.6

Q ss_pred             CceeEEEeCCC-CcEEEEeecCCCCC--eEEeeccCCcHHHHHHHHHHHHHHccCC
Q 047387          107 VSYRGVRRRPW-GKYAAEIRDSTRNG--VRVWIGTFDTAEAAALAYDQAAFAMRGT  159 (239)
Q Consensus       107 s~YRGVr~r~~-GKW~AeIr~~~~~G--kri~LGtFdT~EEAArAYD~AA~~~~G~  159 (239)
                      |+|+||++++. ++|+|.|++...+|  ++++||.|++++||++|++.++..++|+
T Consensus         1 s~~~GV~~~~~~~~W~a~i~~~~~~g~~k~f~~g~fg~~~eA~~~a~~~r~~~~~e   56 (56)
T PF00847_consen    1 SGYKGVSWDKRRGRWRAQIRVWSENGKRKRFSVGKFGFEEEAKRAAIEARKELEGE   56 (56)
T ss_dssp             SSSTTEEEETTTTEEEEEEEECCCTTEEEEEEECCCCCHHHHHHHHHHHHHHCTS-
T ss_pred             CCcEEEEEcCCCCEEEEEEEEcccCcccEEEeCccCCCHHHHHHHHHHHHHHhcCC
Confidence            68999998775 99999999854444  9999999999999999999999999874

Ethylene, chemically the simplest plant hormone, participates in a number of stress responses and developmental processes: e.g., fruit ripening, inhibition of stem and root elongation, promotion of seed germination and flowering, senescence of leaves and flowers, and sex determination []. DNA sequence elements that confer ethylene responsiveness have been shown to contain two 11bp GCC boxes, which are necessary and sufficient for transcriptional control by ethylene. Ethylene responsive element binding proteins (EREBPs) have now been identified in a variety of plants. The proteins share a similar domain of around 59 amino acids, which interacts directly with the GCC box in the ERE.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3IGM_A 3GCC_A 1GCC_A 2GCC_A.

>PF14657 Integrase_AP2: AP2-like DNA-binding integrase domain

Probab=83.53  E-value=3.6  Score=27.75  Aligned_cols=38  Identities=16%  Similarity=0.114  Sum_probs=29.3

Q ss_pred             cEEEEee--cC-CCCCeEEeeccCCcHHHHHHHHHHHHHHc
Q 047387          119 KYAAEIR--DS-TRNGVRVWIGTFDTAEAAALAYDQAAFAM  156 (239)
Q Consensus       119 KW~AeIr--~~-~~~Gkri~LGtFdT~EEAArAYD~AA~~~  156 (239)
                      +|...|.  ++ +++-++++-+-|.|..||..+..++...+
T Consensus         1 ~w~~~v~g~~~~~Gkrk~~~k~GF~TkkeA~~~~~~~~~~~   41 (46)
T PF14657_consen    1 TWYYRVYGYDDETGKRKQKTKRGFKTKKEAEKALAKIEAEL   41 (46)
T ss_pred             CEEEEEEEEECCCCCEEEEEcCCCCcHHHHHHHHHHHHHHH
Confidence            5888883  33 44447789999999999999998876665

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	239
1gcc_A	63	Solution Nmr Structure Of The Complex Of Gcc-Box Bi		7e-16
2gcc_A	70	Solution Structure Of The Gcc-Box Binding Domain, N		8e-16

>pdb|1GCC|A Chain A, Solution Nmr Structure Of The Complex Of Gcc-Box Binding Domain Of Aterf1 And Gcc-Box Dna, Minimized Average Structure Length = 63

Iteration: 1
 Score = 80.9 bits (198), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 33/59 (55%), Positives = 41/59 (69%)
Query: 109 YRGVRRRPWGKYAAEIRDSTRNGVRVWIGTFDTXXXXXXXXXXXXXXMRGTTAVLNFPV 167
           YRGVR+RPWGK+AAEIRD  +NG RVW+GTF+T              MRG+ A+LNFP+
Sbjct: 3   YRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPL 61

>pdb|2GCC|A Chain A, Solution Structure Of The Gcc-Box Binding Domain, Nmr, Minimized Mean Structure Length = 70

Iteration: 1
 Score = 80.5 bits (197), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 33/59 (55%), Positives = 41/59 (69%)
Query: 109 YRGVRRRPWGKYAAEIRDSTRNGVRVWIGTFDTXXXXXXXXXXXXXXMRGTTAVLNFPV 167
           YRGVR+RPWGK+AAEIRD  +NG RVW+GTF+T              MRG+ A+LNFP+
Sbjct: 6   YRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPL 64
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	239
1gcc_A	63	Ethylene responsive element binding factor 1; tran	3e-42
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-04

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A Length = 63

 Score =  136 bits (345), Expect = 3e-42
 Identities = 44/60 (73%), Positives = 53/60 (88%)

Query: 109 YRGVRRRPWGKYAAEIRDSTRNGVRVWIGTFDTAEAAALAYDQAAFAMRGTTAVLNFPVE 168
           YRGVR+RPWGK+AAEIRD  +NG RVW+GTF+TAE AALAYD+AAF MRG+ A+LNFP+ 
Sbjct: 3   YRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR 62

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.8 bits (92), Expect = 6e-04
 Identities = 30/195 (15%), Positives = 67/195 (34%), Gaps = 46/195 (23%)

Query: 43  HNNHQYLPF--NENDSQEMLLLEVLNQASANSMHTISSTSNNNNIKDDHEVSSRAVNATE 100
           H++H ++ F   E+  Q   +L V   A            +  +++D      +++ + E
Sbjct: 1   HHHHHHMDFETGEHQYQYKDILSVFEDA-------FVDNFDCKDVQD----MPKSILSKE 49

Query: 101 EGPLKEV-----SYRGVRRRPWGKYAAEIRDSTRNGVRVWIGTFDTAEAAALAYDQAAFA 155
           E  +  +     +  G  R  W      +       V+ ++            Y    F 
Sbjct: 50  E--IDHIIMSKDAVSGTLRLFW-----TLLSKQEEMVQKFVEEVLRIN-----YK---FL 94

Query: 156 MRGTTAVLNFP--VEKVYESLLEMKYDFEVGSSPVLTLKKRHSMKRKGESKKKIKEKEMR 213
           M         P  + ++Y    +  Y      + V    K + + R  +   K+++  + 
Sbjct: 95  MSPIKTEQRQPSMMTRMYIEQRDRLY----NDNQVFA--KYN-VSRL-QPYLKLRQALLE 146

Query: 214 L---ENVVVFEDLGT 225
           L   +NV++   LG+
Sbjct: 147 LRPAKNVLIDGVLGS 161

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	239
1gcc_A	63	Ethylene responsive element binding factor 1; tran	99.93
3igm_B	77	PF14_0633 protein; AP2 domain, specific transcript	91.89
1u3e_M	174	HNH homing endonuclease; HNH catalytic motif, heli	81.3
1z1b_A	356	Integrase; protein-DNA complex, DNA binding protei	80.56

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A

Probab=99.93  E-value=9.2e-27  Score=168.81  Aligned_cols=61  Identities=72%  Similarity=1.310  Sum_probs=58.5

Q ss_pred             ceeEEEeCCCCcEEEEeecCCCCCeEEeeccCCcHHHHHHHHHHHHHHccCCCCCCCCCch
Q 047387          108 SYRGVRRRPWGKYAAEIRDSTRNGVRVWIGTFDTAEAAALAYDQAAFAMRGTTAVLNFPVE  168 (239)
Q Consensus       108 ~YRGVr~r~~GKW~AeIr~~~~~Gkri~LGtFdT~EEAArAYD~AA~~~~G~~A~lNFp~~  168 (239)
                      +||||++++||||+|+|+++.++|+++|||+|+|+||||+|||.|+++++|..|.+|||.+
T Consensus         2 ~yrGV~~r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~   62 (63)
T 1gcc_A            2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR   62 (63)
T ss_dssp             CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred             CcccEeeCCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCc
Confidence            6999999999999999999887799999999999999999999999999999999999974

>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}

Probab=91.89  E-value=0.1  Score=39.16  Aligned_cols=29  Identities=21%  Similarity=0.137  Sum_probs=23.4

Q ss_pred             CCCCceeEEEeCCC-CcEEEEeecCCCCCeEEe
Q 047387          104 LKEVSYRGVRRRPW-GKYAAEIRDSTRNGVRVW  135 (239)
Q Consensus       104 ~~~s~YRGVr~r~~-GKW~AeIr~~~~~Gkri~  135 (239)
                      ...|+|.||++.+. +.|.|.-.+   +|++..
T Consensus         3 ~~~Sg~pGVsw~kR~~~WlA~W~e---~g~rrs   32 (77)
T 3igm_B            3 HMSSGYPGVSWNKRMCAWLAFFYD---GASRRS   32 (77)
T ss_dssp             -CCSSSTTEEEETTTTEEEEEEEE---TTEEEE
T ss_pred             CCCCCCCcEEeecCCceEEEEEec---CCeEee
Confidence            35799999998876 999999998   576654

>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1

Probab=81.30  E-value=0.23  Score=40.65  Aligned_cols=37  Identities=5%  Similarity=-0.111  Sum_probs=28.4

Q ss_pred             eeEEEeCCCCcEEEEeecCCCCCeEEeeccCCcHHHHHHHH
Q 047387          109 YRGVRRRPWGKYAAEIRDSTRNGVRVWIGTFDTAEAAALAY  149 (239)
Q Consensus       109 YRGVr~r~~GKW~AeIr~~~~~Gkri~LGtFdT~EEAArAY  149 (239)
                      .+||.+...++|.|.|..   + +.++||.|+|.+|||++|
T Consensus       109 ~~g~~~~~~~k~~~vi~~---~-~~~~~~~f~s~~eAa~~~  145 (174)
T 1u3e_M          109 SKAQQIAKIKNQKPIIVI---S-PDGIEKEYPSTKCACEEL  145 (174)
T ss_dssp             HHHHHHHHHHTCCCEEEE---C-TTSCEEEESCHHHHHHHH
T ss_pred             eeeeeeccCCCCceEEEE---c-CCceEEeeCCHHHHHHHH
Confidence            467765223678899987   3 456799999999999996

>1z1b_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 3.80A {Enterobacteria phage lambda} SCOP: d.10.1.4 d.163.1.1 PDB: 1z1g_A 1kjk_A 2wcc_3*

Probab=80.56  E-value=2.2  Score=36.41  Aligned_cols=41  Identities=20%  Similarity=0.142  Sum_probs=31.1

Q ss_pred             EEEeCCCCcEEEEeecCCCCCeEEeeccCCcHHHHHHHHHHHHHHc
Q 047387          111 GVRRRPWGKYAAEIRDSTRNGVRVWIGTFDTAEAAALAYDQAAFAM  156 (239)
Q Consensus       111 GVr~r~~GKW~AeIr~~~~~Gkri~LGtFdT~EEAArAYD~AA~~~  156 (239)
                      ||.+++.|.|..+...   +|+++.+|.  |..||..+...+...+
T Consensus        15 ~v~~~~~g~~~~r~~~---~gk~~~~g~--t~~eA~~~a~~~~~~~   55 (356)
T 1z1b_A           15 NLYIRNNGYYCYRDPR---TGKEFGLGR--DRRIAITEAIQANIEL   55 (356)
T ss_dssp             TEEEETTTEEEEECTT---TCCEEEEES--CHHHHHHHHHHHHHHH
T ss_pred             cceecCCCeEEEEeec---CCeEEECCC--CHHHHHHHHHHHHHHH
Confidence            5777788999988764   688999996  8888877766655444

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	239
d1gcca_	63	d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cr	5e-34

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 63

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  114 bits (288), Expect = 5e-34
 Identities = 44/60 (73%), Positives = 53/60 (88%)

Query: 109 YRGVRRRPWGKYAAEIRDSTRNGVRVWIGTFDTAEAAALAYDQAAFAMRGTTAVLNFPVE 168
           YRGVR+RPWGK+AAEIRD  +NG RVW+GTF+TAE AALAYD+AAF MRG+ A+LNFP+ 
Sbjct: 3   YRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR 62

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	239
d1gcca_	63	GCC-box binding domain {Mouse-ear cress (Arabidops	99.93

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.93  E-value=2.5e-27  Score=170.79  Aligned_cols=61  Identities=72%  Similarity=1.310  Sum_probs=58.6

Q ss_pred             ceeEEEeCCCCcEEEEeecCCCCCeEEeeccCCcHHHHHHHHHHHHHHccCCCCCCCCCch
Q 047387          108 SYRGVRRRPWGKYAAEIRDSTRNGVRVWIGTFDTAEAAALAYDQAAFAMRGTTAVLNFPVE  168 (239)
Q Consensus       108 ~YRGVr~r~~GKW~AeIr~~~~~Gkri~LGtFdT~EEAArAYD~AA~~~~G~~A~lNFp~~  168 (239)
                      +||||+++++|||.|+|+++..+++++|||+|+|+||||+|||+||++++|+.|.+|||++
T Consensus         2 ~yrGVr~r~~gkw~A~Ir~~~~~~~r~~LGtf~t~eeAArAYD~aa~~~~G~~a~~NFP~~   62 (63)
T d1gcca_           2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR   62 (63)
T ss_dssp             CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred             CcceEeECCCCCEEEEEecCCCCCcEeccccccCHHHHHHHHHHHHHHhcCCCcccCCCcc
Confidence            5999999999999999999888899999999999999999999999999999999999975