Citrus Sinensis ID: 047455

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------
Protein Sequence
MEQSSSLCPIKYTVHRNVTKKFTKPSLKSNKRIADERRVVRILTTDHDATDSSSDEEGEFFSRQRVKRYVSEINIETSCSSSSKNSSSNAAGAVGSNRKRVAADNMNNDAARPLRQASQTTNGKKFRGVRQRPWGKWAAEIRDPARRVRLWLGTYDTAEEAARVYDNAAIKLRGPDALTNFSTPPPAVEVEVEVEKPETTINVSATATVSGYESGEESHCHNLSSPTSVLNFRTHSSEESEQEKPPKDEEIQGETTTTAVLCDDSSGGGDYLPLDLPFLDEFFSNVPTPGLSFFHDDGGNPAAPMFQDSIFFSTDEFLDTVPQDFGGDFTFSTTSSYPSSSALCQVDDYFQDIGDLFSADPPLVGGL
Secondary Structure (PSIPRED)
ccccccccccccEEEEEEEEccccccccccccccccccEEEEEEccccccccccccccccccccccccEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccEEEEEEcccccccEEEEccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccEEEEEEEEEEEEEcccccccccccccccEEEEEEEEcccccccccccccccccccEEEEEEEEEEccccccHHccccccccccccccccccccccccccccccccccccccccccEEEEEEEcccccEEEEEEcccccEEEEEcccccHHHHHHHHHHHHHHHHccccEEcccccccccccccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccHcccccccccEEccc
Coil and Loop (DISEMBL)
meqssslcpikytvhrnvtkkftkpslksnkriadeRRVVRILTtdhdatdsssdeegeffsrqRVKRYVSEINIetscssssknsssnaagavgsnrkrvaadnmnndaarplrqasqttngkkfrgvrqrpwgkwaaeirDPARRVRLWLGTYDTAEEAARVYDNAAiklrgpdaltnfstpppavevevevekpettinvsatatvsgyesgeeshchnlssptsvlnfrthsseeseqekppkdeeiqgettttavlcddssgggdylpldlpfldeffsnvptpglsffhddggnpaapmfqdsiffstdefldtvpqdfggdftfsttssypsssalcqvddyfqdigdlfsadpplvggl
Flexible Loop (DISEMBL)
meqssslcpikytvhrnvtkkftkpslksnkriaderrvvrilttdhdatdsssdeegeffsrqrvKRYVSEINIEtscssssknsssnaagavgsnrkRVAADNmnndaarplrqasqttngkkfrgvrqrpwgkwaaeirdparrvRLWLGTYDTAEEAARVYDNAAIKLRGPDALTNFSTPPPAVEVEvevekpettinvSATATVSGYESGEESHCHNLSSPTSVLNFRTHSseeseqekppkdeeiqgeTTTTAVLCDDSSGGGDYLPLDLPFLDEFFSNVPTPGLSFFHDDGGNPAAPMFQDSIFFSTDEFLDTVPQDFGGDFTFSTTSSYPSSSALCQVDDYFQDIGDLFSadpplvggl
Low Complexity Region (SEG)
MEQSSSLCPIKYTVHRNVTKKFTKPSLKSNKRIADERRVVRILttdhdatdsssdeegeffsRQRVKRYVSEINIETscssssknsssnaagavgsnRKRVAADNMNNDAARPLRQASQTTNGKKFRGVRQRPWGKWAAEIRDPARRVRLWLGTYDTAEEAARVYDNAAIKLRGPDALTNFSTpppavevevevekpeTTINVSATATVSGYESGEESHCHNLSSPTSVLNFRTHsseeseqekppkdeeIQGETTTTAVLCddssgggdylpldlpfldeffsNVPTPGLSFFHDDGGNPAAPMFQDSIFFSTDEFLDTVPQDFGGDftfsttssypsssALCQVDDYFQDIGDLFSADPPLVGGL
Disordered region (IsUnstruct)
*******CPIKYTVHRNVT********************VRI**************************************************************************************VRQRPWGKWAAEIRDPARRVRLWLGTYDTAEEAARVYDNAAIKLRGPDAL********************************************************************************AVLCDDSSGGGDYLPLDLPFLDEFFSNVPTPGLSFFHDDGGNPAAPMFQDSIFFSTDEFLDTVPQDFGGDFTFSTTSSYPSSSALCQVDDYFQDIGDLFS*********
Disordered Region (DISOPRED)
************TVH*************************RILTTDHDATDS***************RYVSEIN******************************************************VRQRPWGKWAAEIRDPARRVRLWLGTYDTAEEAARVYDNAAIKLRGPDALTNF******************************************************************************************LPLDLPFLDEFFSNVPTPGLSFFHDDGGNPAAPMFQDSIFFSTDEFLDTVPQDFGGDFTFSTTSSYPSSSALCQVDDYFQDIGDLFSADPPLVGGL
Disordered Region (DISEMBL)
MEQSSSLCPIKYTVHRNVTKKFTKPSLKSNKRIADERRVVRILTTDH***************RQRVKRYVSEINI***********************KRVAADNMNNDAARPLRQASQTTNGKKFRGVRQRPWGKWAAEIRDPARRVRLWLGTYDTAEEAARVYDNAAIKLRGPDALTNFSTPPPAVEVEVEVEKPETTINVSATATV*****************TSVLN***********************TTTTAVLCDDSSGGGDYLPLDLPFLDEFFSNVPTPGLSFFHDDGGNPAAPMFQDSIFFSTDEFLDTVPQDFGGDFTFSTTSSYPSSSALCQVDDYFQDIGDLFSADPPLVGGL
Disordered Region (DISPRO)
*****SLCPIKYTVHRNVTKKFTKP********ADERRVVRILTTDHD**D*********FSRQRVKRYVSEINIET********************************************NGKKFRGVRQRPWGKWAAEIRDPARRVRLWLGTYDTAEEAARVYDNAAIKLRGPDALTNFSTPPP******************************************************************************SSGGGDYLPLDLPFLDEFFSNVPTPGLSFFHDDGGNPAAPMFQDSIFFSTDEFLDTVPQDFGGDFTFSTTSSYPSSSALCQVDDYFQDIGDLFSADPPLVGGL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEQSSSLCPIKYTVHRNVTKKFTKPSLKSNKRIADERRVVRILTTDHDATDSSSDEEGEFFSRQRVKRYVSEINIETSCSSSSKNSSSNAAGAVGSNRKRVAADNMNNDAARPLRQASQTTNGKKFRGVRQRPWGKWAAEIRDPARRVRLWLGTYDTAEEAARVYDNAAIKLRGPDALTNFSTPPPAVEVEVEVEKPETTINVSATATVSGYESGEESHCHNLSSPTSVLNFRTHSSEESEQEKPPKDEEIQGETTTTAVLCDDSSGGGDYLPLDLPFLDEFFSNVPTPGLSFFHDDGGNPAAPMFQDSIFFSTDEFLDTVPQDFGGDFTFSTTSSYPSSSALCQVDDYFQDIGDLFSADPPLVGGL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	367	2.2.26 [Sep-21-2011]
Q9SUE3	335	Ethylene-responsive trans	yes	no	0.839	0.919	0.426	8e-60
Q9FK12	354	Ethylene-responsive trans	no	no	0.885	0.918	0.409	9e-44
Q9SUQ2	343	Ethylene-responsive trans	no	no	0.863	0.924	0.365	3e-37
O82503	287	Ethylene-responsive trans	no	no	0.702	0.898	0.364	7e-37
O82339	294	Ethylene-responsive trans	no	no	0.629	0.785	0.395	5e-33
Q9M374	315	Ethylene-responsive trans	no	no	0.678	0.790	0.388	1e-31
O04682	248	Pathogenesis-related gene	N/A	no	0.403	0.596	0.486	7e-28
Q9C995	161	Ethylene-responsive trans	no	no	0.356	0.813	0.449	3e-23
Q8W4I5	159	Ethylene-responsive trans	no	no	0.356	0.823	0.493	4e-21
O22259	171	Ethylene-responsive trans	no	no	0.239	0.514	0.486	3e-19

>sp|Q9SUE3|CRF4_ARATH Ethylene-responsive transcription factor CRF4 OS=Arabidopsis thaliana GN=CRF4 PE=1 SV=2

 Score =  231 bits (588), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 145/340 (42%), Positives = 207/340 (60%), Gaps = 32/340 (9%)

Query: 1   MEQSSSLCPIKYTVHRNVTKKFTKPS-LKSNKRIADERRVVRILTTDHDATDSSSDEEGE 59
           M++   L P+KYT H+ V +K+TK S ++    + D  R+VR+  TD DATDSSSDEE  
Sbjct: 3   MDEFMDLRPVKYTEHKTVIRKYTKKSSMERKTSVRDSARLVRVSMTDRDATDSSSDEEEF 62

Query: 60  FFSRQRVKRYVSEINIETSCSSSSKNSSSNAAGAVGSNRKRVAADNMNNDAARPLRQASQ 119
            F R+RVKR ++EI +E S SS+      + + +   +RKR+   N+++   +P   +  
Sbjct: 63  LFPRRRVKRLINEIRVEPSSSSTG-----DVSASPTKDRKRI---NVDSTVQKP---SVS 111

Query: 120 TTNGKKFRGVRQRPWGKWAAEIRDPARRVRLWLGTYDTAEEAARVYDNAAIKLRGPDALT 179
             N KK+RGVRQRPWGKWAAEIRDP +R R+WLGT+ TAEEAA VYDNAAIKLRGPDALT
Sbjct: 112 GQNQKKYRGVRQRPWGKWAAEIRDPEQRRRIWLGTFATAEEAAIVYDNAAIKLRGPDALT 171

Query: 180 NFSTPPPAVEVEVEVEKPETTINVSATATVSGYESGEESHCHNLSSPTSVLNFRTHSSEE 239
           NF+  P    V+ + ++PE+ ++VS +      ES ++S   +LSSPTSVLN++T+ SEE
Sbjct: 172 NFTVQPEPEPVQEQEQEPESNMSVSIS------ESMDDS--QHLSSPTSVLNYQTYVSEE 223

Query: 240 SEQE--KPPKDE--EIQGETTTTAVLCDDSSGGGDYLPLDLPFLDEFFSNVPTPGLSFFH 295
                 KP K E  E + E  +  +   +++   D  PLD+ FLD +F N   P +S F 
Sbjct: 224 PIDSLIKPVKQEFLEPEQEPISWHLGEGNTNTNDDSFPLDITFLDNYF-NESLPDISIF- 281

Query: 296 DDGGNPAAP----MFQDSIFFST--DEFLDTVPQDFGGDF 329
           D   +P  P     F D + F +  +E+  +  ++ G  F
Sbjct: 282 DQPMSPIQPTENDFFNDLMLFDSNAEEYYSSEIKEIGSSF 321

Component of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9FK12|CRF3_ARATH Ethylene-responsive transcription factor CRF3 OS=Arabidopsis thaliana GN=CRF3 PE=1 SV=1

 Score =  177 bits (450), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 153/374 (40%), Positives = 205/374 (54%), Gaps = 49/374 (13%)

Query: 1   MEQSSSLCPIKYTVHRNVTKKFTKPSLKSNKRIADERRV--VRILTTDHDATDSSSDEEG 58
           M++     P+KYT H+    K+TK   KS+++++  + +  V I  TD DATDSSSDE+ 
Sbjct: 1   MDEYIDFRPLKYTEHKTSMTKYTK---KSSEKLSGGKSLKKVSICYTDPDATDSSSDEDE 57

Query: 59  E--FFSRQRVKRYVSEINIETSCSSSSKNSSSNAAGAVGSNRKRVAA--DNMNNDAA--- 111
           E   F R+RVKR+V+EI +E SC++          G    +RKR+++  D   + A+   
Sbjct: 58  EDFLFPRRRVKRFVNEITVEPSCNNV-------VTGVSMKDRKRLSSSSDETQSPASSRQ 110

Query: 112 RPLRQASQTTNGKKFRGVRQRPWGKWAAEIRDPARRVRLWLGTYDTAEEAARVYDNAAIK 171
           RP  + S +   KKFRGVRQRPWGKWAAEIRDP +R R+WLGT++TAEEAA VYDNAAI+
Sbjct: 111 RPNNKVSVSGQIKKFRGVRQRPWGKWAAEIRDPEQRRRIWLGTFETAEEAAVVYDNAAIR 170

Query: 172 LRGPDALTNFSTPPPAVEVEVEVEKPETTINV--SATATVSGYESGEESHCHNLSSPTSV 229
           LRGPDALTNFS PP   E E E E       V  +     +      E    +LSSPTSV
Sbjct: 171 LRGPDALTNFSIPPQEEEEEEEPEPVIEEKPVIMTTPTPTTSSSESTEEDLQHLSSPTSV 230

Query: 230 LNFRTHSSEESEQ-EKPPKDEEIQ-GETTTTAVLCDDSSGGG---DYLPLDLPFLDEFFS 284
           LN   H SEE +Q ++P K  + + G +         ++G G   D  PLD PFLD +F+
Sbjct: 231 LN---HRSEEIQQVQQPFKSAKPEPGVSNAPWWHTGFNTGLGESDDSFPLDTPFLDNYFN 287

Query: 285 NVPTPGLSFFHDDGGNPAAPMFQDSIFFSTDEFLDTVPQDFGGDFTFSTTSSYPSSSALC 344
             P P +S F         PM  D IF   D+  + +   F G  T +      SSS   
Sbjct: 288 ESP-PEMSIFD-------QPM--DQIFCENDDIFNDML--FLGGETMNIEDELTSSS--- 332

Query: 345 QVDDYFQDIGDLFS 358
                 +D+G  FS
Sbjct: 333 -----IKDMGSTFS 341

Component of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SUQ2|CRF2_ARATH Ethylene-responsive transcription factor CRF2 OS=Arabidopsis thaliana GN=CRF2 PE=1 SV=1

 Score =  156 bits (394), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 140/383 (36%), Positives = 187/383 (48%), Gaps = 66/383 (17%)

Query: 2   EQSSSLCPIKYTVHRNVTKKFTKPSLKSNKRIADERRVVRILTTDHDATDSSSDE----E 57
           E+   L  IK+T H+  T      ++ S      + R++RI  TD DATDSSSD+     
Sbjct: 4   EKKMVLPRIKFTEHKTNTT-----TIVSELTNTHQTRILRISVTDPDATDSSSDDEEEEH 58

Query: 58  GEFFS-RQRVKRYVSEINIETSCSSSSKNSSSNAAGAVGS--NRKRVAADNMNNDAARPL 114
             F S R+RVK++V+E+ +         +S +   G+ G   ++KR      +     P+
Sbjct: 59  QRFVSKRRRVKKFVNEVYL---------DSGAVVTGSCGQMESKKRQKRAVKSESTVSPV 109

Query: 115 RQASQTTNG-KKFRGVRQRPWGKWAAEIRDPARRVRLWLGTYDTAEEAARVYDNAAIKLR 173
             A+ TT G KKFRGVRQRPWGKWAAEIRDP +RVRLWLGTY+TAEEAA VYDNAAI+LR
Sbjct: 110 VSATTTTTGEKKFRGVRQRPWGKWAAEIRDPLKRVRLWLGTYNTAEEAAMVYDNAAIQLR 169

Query: 174 GPDALTNFS-TPPPAVEVEVEVEKPETTINVSATATVSGYESGEESHCHN----LSSPTS 228
           GPDALTNFS TP  A E +     P          +     +       +    L SP S
Sbjct: 170 GPDALTNFSVTPTTATEKKAPPPSPVKKKKKKNNKSKKSVTASSSISRSSSNDCLCSPVS 229

Query: 229 VLNFRTHSSEESEQEKPPKDEEIQGETTT--TAVLCDDSSGGGDYLPLDLPFLDEFFSNV 286
           VL              P   +E  G +++   AV+  +           +  + E FS+ 
Sbjct: 230 VL------------RSPFAVDEFSGISSSPVAAVVVKEEPS--------MTTVSETFSDF 269

Query: 287 PTPGLSFFHDDG----GNPAAPMFQDSIFFSTDEFLDTVPQD--FGGDFTFSTTSSYPSS 340
             P    F DD      +   P +     F  D F   +  D  FG DF  S  SS+   
Sbjct: 270 SAP---LFSDDDVFDFRSSVVPDYLGGDLFGEDLFTADMCTDMNFGFDFG-SGLSSW--- 322

Query: 341 SALCQVDDYFQDIGDLFSADPPL 363
                ++D+FQDIGDLF +DP L
Sbjct: 323 ----HMEDHFQDIGDLFGSDPLL 341

Component of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|O82503|CRF1_ARATH Ethylene-responsive transcription factor CRF1 OS=Arabidopsis thaliana GN=CRF1 PE=1 SV=1

 Score =  154 bits (390), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 125/343 (36%), Positives = 158/343 (46%), Gaps = 85/343 (24%)

Query: 38  RVVRILTTDHDATDSSSDEEGEF------FSRQRVKRYVSEINIETSCSSSSKNSSSNAA 91
           R++RI  TD  ATDSSSDEE E         R+RVK+YV E+ +++  S   K       
Sbjct: 11  RILRISVTDPYATDSSSDEEEEVDFDALSTKRRRVKKYVKEVVLDSVVSDKEKPMKKKRK 70

Query: 92  GAVGSNRKRVAADNMNNDAARPLRQASQTTNGKKFRGVRQRPWGKWAAEIRDPARRVRLW 151
             V +                       TT  +KFRGVRQRPWGKWAAEIRDP+RRVR+W
Sbjct: 71  KRVVTV------------------PVVVTTATRKFRGVRQRPWGKWAAEIRDPSRRVRVW 112

Query: 152 LGTYDTAEEAARVYDNAAIKLRGPDALTNFSTPPPAVEVEVEVEKPETTINVSATATVSG 211
           LGT+DTAEEAA VYDNAAI+LRGP+A  NF  PPP  E    VE+  T +   +   + G
Sbjct: 113 LGTFDTAEEAAIVYDNAAIQLRGPNAELNFP-PPPVTE---NVEEASTEVKGVSDFIIGG 168

Query: 212 YESGEESHCHNLSSPTSVLNFRTHSSEESEQEKPPKDEEIQGETTTTAVLCDDSSGGGDY 271
            E      C  L SP SVL      S  S +    K+E +   T    V  + S  G D+
Sbjct: 169 GE------C--LRSPVSVLE-----SPFSGESTAVKEEFVGVSTAEIVVKKEPSFNGSDF 215

Query: 272 LPLDLPFLDEFFSNVPTPGLSFFHDDGGNPAAPMFQDSIFFSTDEFLDTVPQDFGGDF-- 329
                                         +AP+F D   F    F  ++ + FGGD   
Sbjct: 216 ------------------------------SAPLFSDDDVFG---FSTSMSESFGGDLFG 242

Query: 330 ---------TFSTTSSYPSSSALCQVDDYFQDIGDLFSADPPL 363
                             S  +   V+D+FQDIGDLF +DP L
Sbjct: 243 DNLFADMSFGSGFGFGSGSGFSSWHVEDHFQDIGDLFGSDPVL 285

Component of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|O82339|CRF5_ARATH Ethylene-responsive transcription factor CRF5 OS=Arabidopsis thaliana GN=CRF5 PE=1 SV=1

 Score =  142 bits (357), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 113/286 (39%), Positives = 142/286 (49%), Gaps = 55/286 (19%)

Query: 11  KYTVHRNVTKK----FTKPSLKSNKRIADERRVVRILTTDHDATDSSSDEEGEFFSRQ-R 65
           KYTVHR +T      F K              +V+I+ TD  ATDSSSDEE +  S   R
Sbjct: 9   KYTVHRKITSTPFDGFPK--------------IVKIIVTDPCATDSSSDEENDNKSVAPR 54

Query: 66  VKRYVSEINIETSCSSSSKNSSSNAAGAVGSNRKRVAADNMNNDAARPLRQASQTTNGKK 125
           VKRYV EI     C    +   +  A             ++                  K
Sbjct: 55  VKRYVDEIRF---CDEDDEPKPARKAKKKSPAAAAENGGDLVKSVV-------------K 98

Query: 126 FRGVRQRPWGKWAAEIRDPARRVRLWLGTYDTAEEAARVYDNAAIKLRGPDALTNFSTPP 185
           +RGVRQRPWGK+AAEIRDP+ R RLWLGT+ TAEEAA  YD AAI+++G +A TNF TPP
Sbjct: 99  YRGVRQRPWGKFAAEIRDPSSRTRLWLGTFATAEEAAIGYDRAAIRIKGHNAQTNFLTPP 158

Query: 186 PAVEVEVEVEKPETTINVSATATVSGYESGEESHCHNLSSPTSVLNFRTHSSEESEQEKP 245
           P+   EV  E P     V    TVSG +S  ES   +L SPTSVL F +H ++E+E    
Sbjct: 159 PSPTTEVLPETP-----VIDLETVSGCDSARESQI-SLCSPTSVLRF-SH-NDETEYRTE 210

Query: 246 PKDEEIQGETTTTAVLCDDSSGGGDY-----LPLDLPFLDEFFSNV 286
           P +E+             D    GDY     +  D  FLDEF  ++
Sbjct: 211 PTEEQ-------NPFFLPDLFRSGDYFWDSEITPDPLFLDEFHQSL 249

Component of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M374|CRF6_ARATH Ethylene-responsive transcription factor CRF6 OS=Arabidopsis thaliana GN=CRF6 PE=1 SV=1

 Score =  137 bits (346), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 115/296 (38%), Positives = 147/296 (49%), Gaps = 47/296 (15%)

Query: 10  IKYTVHRNVTKKFTKPSLKSNKRIADERRVVRILTTDHDATDSSSDEEGE--FFSRQRVK 67
           +K+T +R VT     PS  S        R+VRI  TD  ATDSSSD++         RVK
Sbjct: 8   VKFTENRTVTNVAATPSNGSP-------RLVRITVTDPFATDSSSDDDDNNNVTVVPRVK 60

Query: 68  RYVSEINIETSCSSSSKNSSSNAAGAVGSNRKRVAADNMNNDAARPLRQASQTTNGKKFR 127
           RYV EI     C   S +S++   G        V  D++           S +   KK+R
Sbjct: 61  RYVKEIRF---CQGESSSSTAARKGKHKEEESVVVEDDV-----------STSVKPKKYR 106

Query: 128 GVRQRPWGKWAAEIRDPARRVRLWLGTYDTAEEAARVYDNAAIKLRGPDALTNFSTPPPA 187
           GVRQRPWGK+AAEIRDP+ R R+WLGT+ TAEEAA  YD AAI L+GP ALTNF TPP  
Sbjct: 107 GVRQRPWGKFAAEIRDPSSRTRIWLGTFVTAEEAAIAYDRAAIHLKGPKALTNFLTPP-- 164

Query: 188 VEVEVEVEKPETTINVSATATVSGYESGEESHCHNLSSPTSVLNFRTHSSEESEQEKPPK 247
                    P   I++    TVS  + G +S   +L SPTSVL F  +   E E E    
Sbjct: 165 --------TPTPVIDLQ---TVSACDYGRDSR-QSLHSPTSVLRFNVNEETEHEIEAI-- 210

Query: 248 DEEIQGETTTTAVLCDDSSGGG-----DYLPLDLPFLDE-FFSNVPTPGLSFFHDD 297
             E+  E  +T +  ++ S  G      YL  DL    E F+     P L F  ++
Sbjct: 211 --ELSPERKSTVIKEEEESSAGLVFPDPYLLPDLSLAGECFWDTEIAPDLLFLDEE 264

Component of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|O04682|PTI6_SOLLC Pathogenesis-related genes transcriptional activator PTI6 OS=Solanum lycopersicum GN=PTI6 PE=2 SV=1

 Score =  125 bits (313), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 87/179 (48%), Positives = 111/179 (62%), Gaps = 31/179 (17%)

Query: 5   SSLCPIKYTVHRNVTKK--FTKPSLKSNKRIADERRVVRILTTDHDATDSSSDEEGEFFS 62
           +S+  IK+T H   T K  F++ + KSN  +   +RVVRI+ TD DATDSS DE     +
Sbjct: 4   NSVPVIKFTQHIVTTNKHVFSEHNEKSNSEL---QRVVRIILTDADATDSSDDEGRN--T 58

Query: 63  RQRVKRYVSEINIETSCSSSSKNSSSNAAGAVGSNRKRVAADNMNNDAARPLRQASQTTN 122
            +RVKR+V+EIN+  S  S            +G  ++R  + +            S  T 
Sbjct: 59  VRRVKRHVTEINLMPSTKS------------IGDRKRRSVSPD------------SDVTR 94

Query: 123 GKKFRGVRQRPWGKWAAEIRDPARRVRLWLGTYDTAEEAARVYDNAAIKLRGPDALTNF 181
            KKFRGVRQRPWG+WAAEIRDP R  R+WLGTYDT EEAA VYD AA+KL+GPDA+TNF
Sbjct: 95  RKKFRGVRQRPWGRWAAEIRDPTRGKRVWLGTYDTPEEAAVVYDKAAVKLKGPDAVTNF 153

Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Activates the defense genes of plants.

Solanum lycopersicum (taxid: 4081)

>sp|Q9C995|ERF70_ARATH Ethylene-responsive transcription factor ERF070 OS=Arabidopsis thaliana GN=ERF070 PE=1 SV=1

 Score =  109 bits (273), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 71/158 (44%), Positives = 89/158 (56%), Gaps = 27/158 (17%)

Query: 37  RRVVRILTTDHDATDSSSDEE-----GEFFSRQRVKRYVSEINIETSCSSSSKNSSSNAA 91
           +R++RI  TD +ATDSSSDE+     G   +R+R KR V EI I+ S S+   +      
Sbjct: 2   KRIIRISFTDAEATDSSSDEDTEERGGASQTRRRGKRLVKEIVIDPSDSADKLDVCKT-- 59

Query: 92  GAVGSNRKRVAADNMNNDAARPLRQASQTTNGKKFRGVRQRPWGKWAAEIRD-----PAR 146
                 + R+ A+ +                 KK+RGVRQRPWGKW AEIR        R
Sbjct: 60  ----RFKIRIPAEFLKT-----------AKTEKKYRGVRQRPWGKWVAEIRCGRGACKGR 104

Query: 147 RVRLWLGTYDTAEEAARVYDNAAIKLRGPDALTNFSTP 184
           R RLWLGT++TAEEAA  YDNA+IKL GP A TNF  P
Sbjct: 105 RDRLWLGTFNTAEEAALAYDNASIKLIGPHAPTNFGLP 142

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8W4I5|ERF69_ARATH Ethylene-responsive transcription factor ERF069 OS=Arabidopsis thaliana GN=ERF069 PE=1 SV=1

 Score =  102 bits (254), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 75/152 (49%), Positives = 89/152 (58%), Gaps = 21/152 (13%)

Query: 37  RRVVRILTTDHDATDSSSDEEGEFFS-RQRVKRYVSEINIETSCSSSSKNSSSNAAGAVG 95
           +R+VRI  TD +ATDSSS E+    S R+R K+ V EI I+ S               VG
Sbjct: 2   KRIVRISFTDMEATDSSSSEDESPPSSRRRGKKLVKEIVIDHSDPPE-----------VG 50

Query: 96  SNRKRVAADNMNNDAARPLRQASQTTNGKKFRGVRQRPWGKWAAEIR---DPARRVRLWL 152
             R ++         A  L   + T N KKFRGVRQRPWGKWAAEIR      R  R+WL
Sbjct: 51  KTRFKI------RIPASLLAARNTTANKKKFRGVRQRPWGKWAAEIRCGRVKGRPERIWL 104

Query: 153 GTYDTAEEAARVYDNAAIKLRGPDALTNFSTP 184
           GT++TAEEAA  YDNAAI+L GPDA TNF  P
Sbjct: 105 GTFETAEEAALAYDNAAIQLIGPDAPTNFGRP 136

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|O22259|ERF71_ARATH Ethylene-responsive transcription factor ERF071 OS=Arabidopsis thaliana GN=ERF071 PE=2 SV=1

 Score = 96.7 bits (239), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 53/109 (48%), Positives = 70/109 (64%), Gaps = 21/109 (19%)

Query: 92  GAVGSNRKRVAADNMNNDAARPLRQASQTTNGKK-----FRGVRQRPWGKWAAEIRDPAR 146
           G+V S +KR           +P+   S+  +GK+     +RG+RQRPWGKWAAEIRDP++
Sbjct: 23  GSVSSRKKR-----------KPV-SVSEERDGKRERKNLYRGIRQRPWGKWAAEIRDPSK 70

Query: 147 RVRLWLGTYDTAEEAARVYDNAAIKLRGPDALTNFSTPPPAVEVEVEVE 195
            VR+WLGT+ TA+EAAR YD AAIK+RG  A  NF    P  +VE E +
Sbjct: 71  GVRVWLGTFKTADEAARAYDVAAIKIRGRKAKLNF----PNTQVEEEAD 115

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	367
224118152	365	AP2/ERF domain-containing transcription	0.888	0.893	0.514	5e-79
224116922	363	AP2/ERF domain-containing transcription	0.866	0.876	0.498	4e-78
255545072	309	Ethylene-responsive transcription factor	0.705	0.838	0.561	7e-76
225462703	341	PREDICTED: ethylene-responsive transcrip	0.841	0.906	0.519	3e-75
292668903	353	AP2 domain class transcription factor [M	0.910	0.946	0.503	5e-74
356507594	324	PREDICTED: ethylene-responsive transcrip	0.822	0.932	0.489	5e-69
356518613	353	PREDICTED: ethylene-responsive transcrip	0.899	0.934	0.469	2e-68
449463464	326	PREDICTED: ethylene-responsive transcrip	0.844	0.950	0.486	1e-67
225426038	327	PREDICTED: ethylene-responsive transcrip	0.866	0.972	0.442	2e-65
449531334	313	PREDICTED: ethylene-responsive transcrip	0.828	0.971	0.494	5e-65

>gi|224118152|ref|XP_002317743.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa] gi|222858416|gb|EEE95963.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa]

 Score =  300 bits (769), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 194/377 (51%), Positives = 221/377 (58%), Gaps = 51/377 (13%)

Query: 1   MEQSSSLCPIKYTVHRNVTKKFTKPSLKSNKRIADER-----------RVVRILTTDHDA 49
           M   S LCPIKYT H+ VTKKFTK  LK N   +D+R           R+VR+  TDHDA
Sbjct: 1   MIDQSILCPIKYTEHKKVTKKFTKQPLKPNMVHSDDRCRSPEPSNPAPRLVRVTVTDHDA 60

Query: 50  TDSSSDEEGEFFSRQRVKRYVSEINIETSCSSSSKNSSSNAAGAVGSNRKRVAADNMNND 109
           TDSSSDEEGE F RQRVKRYVSEINI+ +      N     A  +  NRKR   D     
Sbjct: 61  TDSSSDEEGELFGRQRVKRYVSEINIQPAAFCKETNV---IATTIAKNRKRSVGDIPQKP 117

Query: 110 AARPLRQASQTTNGKKFRGVRQRPWGKWAAEIRDPARRVRLWLGTYDTAEEAARVYDNAA 169
           A R    A  TTNG+KFRGVRQRPWGKWAAEIRDPARRVRLWLGTYDTAEEAARVYDNAA
Sbjct: 118 AKR--LTAQSTTNGRKFRGVRQRPWGKWAAEIRDPARRVRLWLGTYDTAEEAARVYDNAA 175

Query: 170 IKLRGPDALTNFSTPPPAVE----------VEVEVEKPETTINVSATATVSGYESGEESH 219
           IKLRGPDALTNF+TPP   E           E E +KPE  INV  T + SGYES +ES 
Sbjct: 176 IKLRGPDALTNFTTPPSREEDQEEEKSSPVEESEEKKPE--INVE-TVSGSGYESADES- 231

Query: 220 CHNLSSPTSVLNFRTHSSEESEQEKPPKDEEIQGETTTTAVLCDDSSGG---GDYLPLDL 276
            H+LSSP SVL FR  S   +E  KPP     + +        +++ G     DYLPLD 
Sbjct: 232 -HSLSSPKSVLTFRLPS---AESHKPPSQPFQEAKMEPKHQDNEEAFGESNLSDYLPLDS 287

Query: 277 PFLDEFFSNVPTPGLSFFHDD---GGNPAAPMFQDSIFFSTDEFLDTVPQDFGGDFTFST 333
           PFLD+FF N  T G + F D        A  +FQ+SI            QDF GD     
Sbjct: 288 PFLDDFF-NFGTSGPTLFDDQVIATTTTATSIFQESIMCD---------QDF-GDIFLDP 336

Query: 334 TSSYPSSSALCQVDDYF 350
              + S  ++CQ DD F
Sbjct: 337 LQDFTSLPSVCQEDDDF 353

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224116922|ref|XP_002331847.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa] gi|222875085|gb|EEF12216.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa]

 Score =  297 bits (761), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 191/383 (49%), Positives = 225/383 (58%), Gaps = 65/383 (16%)

Query: 1   MEQSSSLCPIKYTVHRNVTKKFTKPSLKSNKRIADER-----------RVVRILTTDHDA 49
           M   S LCPIKYT H+ VTK+FTKPSLK  K  +D+R           R+VR+  TDHDA
Sbjct: 1   MIDQSILCPIKYTEHKKVTKQFTKPSLKPKKLPSDDRCRLLEPSNPQPRLVRVTVTDHDA 60

Query: 50  TDSSSDEEGEFFSRQRVKRYVSEINIETSCSSSSKNSSSNAAGAVGSNRKRVAADNMNND 109
           TDSSSDEEG  F RQRVKRYV+EI+I+ SC  ++  ++     AV +NRKR   D     
Sbjct: 61  TDSSSDEEGGLFGRQRVKRYVNEIDIQASCKETNAITT-----AVANNRKRGVGDIPQRP 115

Query: 110 AARPLRQASQTTNGKKFRGVRQRPWGKWAAEIRDPARRVRLWLGTYDTAEEAARVYDNAA 169
           A +   Q+  T NG+KFRGVRQRPWGKWAAEIRDPARR RLWLGTYDTAEEAARVYDNAA
Sbjct: 116 AKKSAPQS--TNNGRKFRGVRQRPWGKWAAEIRDPARRQRLWLGTYDTAEEAARVYDNAA 173

Query: 170 IKLRGPDALTNFSTPPPAVEVEVEVEK-----------PETTINVSATATVSGYESGEES 218
           IKLRGPDALTNF T PP+ E E E EK            +  INV  T + SGYES +ES
Sbjct: 174 IKLRGPDALTNFIT-PPSREEEQEQEKSTVEEREGEEKKKPEINVD-TVSGSGYESADES 231

Query: 219 HCHNLSSPTSVLNFRTHSSEE--------SEQEKPPK---DEEIQGETTTTAVLCDDSSG 267
             H+LSSP SVL FR  S+E          E EK P    ++E  GE+ +T         
Sbjct: 232 --HSLSSPKSVLTFRLPSAESHKPPAHPFHEVEKEPSYQDNQEAFGESNST--------- 280

Query: 268 GGDYLPLDLPFLDEFFSNVPTPGLSFFHDDGGNPAAPMFQDSIFFSTDEFLDTVPQDFGG 327
             DYLPLD PFLD+FF N  T G + F D     A     +  F S  +F         G
Sbjct: 281 --DYLPLDAPFLDDFF-NFGTSGPTLFDDQVMATATTSVFEESFMSNQDF---------G 328

Query: 328 DFTFSTTSSYPSSSALCQVDDYF 350
           D        + S S++CQ DD F
Sbjct: 329 DIFLDPLQDFSSLSSVCQEDDDF 351

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255545072|ref|XP_002513597.1| Ethylene-responsive transcription factor, putative [Ricinus communis] gi|223547505|gb|EEF49000.1| Ethylene-responsive transcription factor, putative [Ricinus communis]

 Score =  290 bits (742), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 177/315 (56%), Positives = 206/315 (65%), Gaps = 56/315 (17%)

Query: 1   MEQSSSLCPIKYTVHRNVTKKFTKPSLKSNKRIADER----------RVVRILTTDHDAT 50
           M   S LCP+K+T H+ +TKK+TKPSLK  K  +DER          RVVRI  TD DAT
Sbjct: 1   MLDQSILCPMKFTEHKRITKKYTKPSLKPKKPSSDERSSCRLEHIPPRVVRISVTDPDAT 60

Query: 51  DSSSDEEGEFFSRQRVKRYVSEINIETSCSSSSKNSSSNAAGAVGSNRKRVAADNMNNDA 110
           DSSSDEE E FSRQRVKRYV+EI+IE +        S+     V S RKR AA+ + N  
Sbjct: 61  DSSSDEEDELFSRQRVKRYVNEISIEAA--------STKETNLVSSGRKRAAANELPNTT 112

Query: 111 ARPLRQASQTTNGKKFRGVRQRPWGKWAAEIRDPARRVRLWLGTYDTAEEAARVYDNAAI 170
            RPL+  +  +NG+KFRGVRQRPWGKWAAEIRDPARRVRLWLGTYDTAEEAA VYDNAAI
Sbjct: 113 QRPLKLNTAHSNGRKFRGVRQRPWGKWAAEIRDPARRVRLWLGTYDTAEEAAIVYDNAAI 172

Query: 171 KLRGPDALTNFSTPP---PAVEVEVEVEKPETTINVSATATVSGYESGEESHCHNLSSPT 227
           KLRGPDALTNF TPP      E E E EKP+T  NV++T   SGYESG+ES  HNLSSPT
Sbjct: 173 KLRGPDALTNFITPPGREQEQEQEQEQEKPDT--NVTST---SGYESGDES--HNLSSPT 225

Query: 228 SVLNFRTHSSEESEQEKP----PKD----------------EEIQGETTTTAVLCDDSSG 267
           SVLNF+ HS  ESE +KP    P D                +E +GET +T         
Sbjct: 226 SVLNFQAHSIGESESQKPESQEPDDKSRIDNKPVLTVQEVVQECEGETNST-------EE 278

Query: 268 GGDY-LPLDLPFLDE 281
             +Y LPLD P+++E
Sbjct: 279 SAEYLLPLDFPWMEE 293

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225462703|ref|XP_002267400.1| PREDICTED: ethylene-responsive transcription factor CRF4 [Vitis vinifera] gi|147838098|emb|CAN74147.1| hypothetical protein VITISV_018946 [Vitis vinifera]

 Score =  288 bits (736), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 201/387 (51%), Positives = 235/387 (60%), Gaps = 78/387 (20%)

Query: 1   MEQSSSLCPIKYTVHRNVTKKFTKPSLKSNKRIADERRVVRILTTDHDATDSSSDEEGEF 60
           M+QS  L PIKYT HR++T K T+ S +  ++ +   RVVRI  TD DATDSSSDEE E 
Sbjct: 1   MDQSL-LYPIKYTEHRSITNKQTRQSRRPPEQNSGVPRVVRISVTDPDATDSSSDEEDEL 59

Query: 61  FSRQRVKRYVSEINIETSCSSSSKNSSSNAAGAVGSNRKRVAADNMNNDAARPLRQASQT 120
           FSRQRVKRY +EINI T         S + A   G  RKR A         RP++ A+  
Sbjct: 60  FSRQRVKRYTNEINIATV--------SKSIAPVAG--RKRGAGAGEMAPCRRPMKVAA-P 108

Query: 121 TNGKKFRGVRQRPWGKWAAEIRDPARRVRLWLGTYDTAEEAARVYDNAAIKLRGPDALTN 180
           TNG+KFRGVRQRPWGKWAAEIRDPARRVRLWLGTYDTAEEAA VYDNAAIKLRGPDALTN
Sbjct: 109 TNGRKFRGVRQRPWGKWAAEIRDPARRVRLWLGTYDTAEEAAMVYDNAAIKLRGPDALTN 168

Query: 181 FSTPPPAVEVEVEVEKPETTINVSATATVSGYESGEESHCHNLSSPTSVLNFRTHSSE-- 238
           F TPPP  + E         IN++A   VSGYESG+ES   NLSSPTSVL+FRTHSS   
Sbjct: 169 FVTPPPPPKPE---------INLTA---VSGYESGDES--RNLSSPTSVLHFRTHSSSTD 214

Query: 239 -----------------------ESEQEKP--PKDEEIQGETTTTAVLCDDSSGGGDYLP 273
                                  E+ Q++P  P  EE QGETT T     DSS   DYLP
Sbjct: 215 EAEPSNRSDPVHETESSEPVQNPETHQQQPVQPVREECQGETTNTG----DSS--VDYLP 268

Query: 274 LDLPFLDEFFSNVPTPGLSFFHDDGGNPAAPMFQDSIFFSTDEFLDTVPQDFGGDFTFST 333
           +DLPF+++ F N   PG S F D    P + + +D   FS D FLD+          F  
Sbjct: 269 MDLPFINDMF-NFEAPG-SIFEDTSILPESILNED---FS-DMFLDS-------PINFDI 315

Query: 334 TSSYPSSSALCQVDDYFQDIGDLFSAD 360
           +SS+         DDYFQDIGDLF++D
Sbjct: 316 SSSWRLE------DDYFQDIGDLFTSD 336

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|292668903|gb|ADE41106.1| AP2 domain class transcription factor [Malus x domestica]

 Score =  284 bits (726), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 191/379 (50%), Positives = 233/379 (61%), Gaps = 45/379 (11%)

Query: 3   QSSSLCPIKYTVHRNVTKKFTKPSLKSNKRIADER--RVVRILTTDHDATDSSSDEEGEF 60
           +SS LCPIKY+ HR+ TKK  KP  K+    A     R+VRI  TD DATDSSSDEE EF
Sbjct: 2   ESSILCPIKYSEHRSTTKKLMKPRKKATSESASTVTPRIVRISVTDPDATDSSSDEEEEF 61

Query: 61  FSRQRVKRYVSEINIETSCSSSSKNSSSNAAGAVGSNRKRVAADNMNNDAARPLRQASQT 120
           F RQRVK YV+EINIET   +S           + + RKR AA+   N   RP++ A   
Sbjct: 62  FGRQRVKHYVNEINIETDFRNSL---------VINNGRKRPAAEVPVN--RRPMKNAVSP 110

Query: 121 TNG-KKFRGVRQRPWGKWAAEIRDPARRVRLWLGTYDTAEEAARVYDNAAIKLRGPDALT 179
            NG KK+RGVRQRPWGKWAAEIRDPARR RLWLGT+DTAEEAA VYDNAAIKLRGPDALT
Sbjct: 111 PNGGKKYRGVRQRPWGKWAAEIRDPARRQRLWLGTFDTAEEAAMVYDNAAIKLRGPDALT 170

Query: 180 NFSTPPPAVEVEVEVEKPETT-INVSATATVSGYESGEESHCHNLSSPTSVLNFRTHSSE 238
           NF  PPP  E + E    E+  +  + T + SGY+SG ES  HNL+SPTSVL+FR+  S 
Sbjct: 171 NFVAPPPKEEEKPEPPVIESIEVETNGTTSASGYDSGSES--HNLASPTSVLHFRSQPSI 228

Query: 239 ESEQEKPPK-------DEEIQGETTTTAVLCDDSSGGGDYLPLDLPFLDEFFSNVPTPGL 291
           E +  KP K       DE+     T T +L DD S  G+YLPLDLP+ D+ FS  P P  
Sbjct: 229 E-DAGKPQKIQVFDRVDEDEDETETGTNILSDDLSYFGNYLPLDLPYFDDAFS-FPAPES 286

Query: 292 SFFHDDGGNPAAPMFQDSIFFSTDEFLDTVPQDFGGDF------TFSTTSSYPSSSALCQ 345
             F        +P+F D +  +     D   +D   DF      T+ T+ S+ ++S + Q
Sbjct: 287 PLFD-------SPLFFDDVPAAAASLPDCFMKD---DFSELLRDTYDTSLSH-TTSPMFQ 335

Query: 346 VDDYFQDIGDLFSADPPLV 364
            DDYFQDI  LF +DP +V
Sbjct: 336 GDDYFQDI--LFGSDPLVV 352

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356507594|ref|XP_003522549.1| PREDICTED: ethylene-responsive transcription factor CRF1-like [Glycine max]

 Score =  267 bits (683), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 184/376 (48%), Positives = 228/376 (60%), Gaps = 74/376 (19%)

Query: 3   QSSSLCPIKYTVHRNVTKKFTKP--SLKSNKRIADERRVVRILTTDHDATDSSSDEEGEF 60
           + S LC  K+TVHR+VTKK   P  S ++N     ERR+VRI  TD DATDSSSDEEG  
Sbjct: 2   EDSILC--KHTVHRSVTKKLISPKKSSQTNSSTQTERRIVRISYTDPDATDSSSDEEGFP 59

Query: 61  FSRQRVKRYVSEINIETSCSSSSKNSSSNAAGAVGSNRKRVAADNMNNDAARPLRQASQT 120
             R+R+KRYV++I IET+              A    RKR A +        P R+ ++ 
Sbjct: 60  LVRKRMKRYVNQIEIETA--------------AEKVVRKRPAGE--------PCRRPAKL 97

Query: 121 TNGKKFRGVRQRPWGKWAAEIRDPARRVRLWLGTYDTAEEAARVYDNAAIKLRGPDALTN 180
            +GKKFRGVRQRPWGKWAAEIRDPARRVRLWLGTYDTAEEAA VYDNAAI+LRGPDALTN
Sbjct: 98  HSGKKFRGVRQRPWGKWAAEIRDPARRVRLWLGTYDTAEEAAMVYDNAAIRLRGPDALTN 157

Query: 181 FSTPPPAVEVEVEVEKPETTINVSATATVSGYESGEESHC-HNLSSPTSVLNFRTHSSEE 239
           F TPP     + E     TT+ V+  A+ SGY+SG++ HC HNLSSPTSVL+FR++S  E
Sbjct: 158 FLTPP-----QRESPSQATTVAVTEEASGSGYDSGDD-HCQHNLSSPTSVLHFRSNS--E 209

Query: 240 SEQEKPPKDEEIQGETTTTAVLCDDSSGGGDYLPLD---LPFLDEFFSNVPTPGL----- 291
           S+Q    K E++  E       C+   G G++L LD   LP  DE F N  TP       
Sbjct: 210 SDQ----KSEQVLRE-------CE---GEGEFLALDNMPLPAWDEVF-NFETPEYPPLLF 254

Query: 292 ---SFFHDDGGNPAAPMFQDSIFFSTDE-FLDT--VPQDFGGDFTFSTTSSYPSSSALCQ 345
              +F HD        M  +++ FS+D+ F D+  V  D   DF      + P  S LCQ
Sbjct: 255 QEGNFLHDYQSQ----MLGETVPFSSDQGFSDSSIVLADSLIDF----DKACPPPSTLCQ 306

Query: 346 VDDYFQDIGDLFSADP 361
           VDD+FQDI  L ++DP
Sbjct: 307 VDDFFQDI--LLASDP 320

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356518613|ref|XP_003527973.1| PREDICTED: ethylene-responsive transcription factor CRF4-like [Glycine max]

 Score =  265 bits (678), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 180/383 (46%), Positives = 224/383 (58%), Gaps = 53/383 (13%)

Query: 3   QSSSLCPIKYTVHRNVTKKFTKPSLKSNKRIADERRVVRILTTDHDATDSSSDEEGEFFS 62
           + S LC  K+TVH  VTKK   P   S      ERR+VRI  TD DATDSSSDEEG  F 
Sbjct: 2   EDSILC--KHTVHHTVTKKLISPKKSSQTNSTTERRIVRISYTDPDATDSSSDEEGFPFV 59

Query: 63  RQRVKRYVSEINIETSCSSSSKNSSSNAAGAVGSNRKRVAADNMNNDAARPLRQASQTTN 122
           RQR+KRYV++I IET             A A    RKR A +          R+ ++  +
Sbjct: 60  RQRMKRYVNQIEIET-------------AAAEKVVRKRPAGE--------ACRRPAKLHS 98

Query: 123 GKKFRGVRQRPWGKWAAEIRDPARRVRLWLGTYDTAEEAARVYDNAAIKLRGPDALTNFS 182
           GKKFRGVRQRPWGKWAAEIRDPARRVRLWLGTYDTAEEAA VYDNAAI+LRGPDALTNF 
Sbjct: 99  GKKFRGVRQRPWGKWAAEIRDPARRVRLWLGTYDTAEEAAMVYDNAAIRLRGPDALTNFV 158

Query: 183 TPPP---------AVEVEVEVEKPETTINVSATATVSGYESGEESHC-HNLSSPTSVLNF 232
           TPP              E   E  E  + V+  A+ SGY+S E+ HC HNLSSPTSVL F
Sbjct: 159 TPPKRDSPSPSPPPAAAETPAEVCEMKVVVTEEASGSGYDSSED-HCHHNLSSPTSVLQF 217

Query: 233 RTHSSEESEQEKPPKDE---EIQGETTTTAVLCDDSSGGGDYLPLD---LPFLDEFFSNV 286
           R++SSEE+ + +   ++   E +GET T+          G++L LD   LP  D+ F N 
Sbjct: 218 RSNSSEENSESQQKAEQVLRECEGETETSLF-----EETGEFLALDNMPLPAWDDVF-NF 271

Query: 287 PTPG---LSFFHDDGGN--PAAPMFQDSIFFSTDEFLDTVPQDFGGDFTFSTTSSYPSSS 341
            TP    L F  ++  N    + M  +++ FS++E           D       + PS S
Sbjct: 272 ETPEYPPLLFQEEENLNLLHQSQMLGETVQFSSEEGFSDESSIMLADSLIDFDRACPSPS 331

Query: 342 ALCQVDDYFQDIGDLFSADPPLV 364
           +LCQVDD+FQDI  LF++DP ++
Sbjct: 332 SLCQVDDFFQDI--LFASDPLVL 352

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449463464|ref|XP_004149454.1| PREDICTED: ethylene-responsive transcription factor CRF4-like [Cucumis sativus]

 Score =  263 bits (671), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 179/368 (48%), Positives = 215/368 (58%), Gaps = 58/368 (15%)

Query: 7   LCPIKYTVHRNVTKKFTKPSLKSNKRIADERRVVRILTTDHDATDSSSDEEGEFFSRQRV 66
             P+K+T HRN T KF+     + K    E RVVRI  TD DATDSSSDE+ +FF RQRV
Sbjct: 6   FSPVKFTEHRNFTNKFS-----AKKHHQSESRVVRISVTDPDATDSSSDED-DFFERQRV 59

Query: 67  KRYVSEINIETSCSSSSKNSSSNAAGAVGSNRKRVAADNMNNDAARPLRQASQTTNGKKF 126
           K+Y++EI I++ C ++           + S RKR A D       R   +    TNGKKF
Sbjct: 60  KKYINEIKIQSGCRNN----------LLPSCRKRPAGDRSE---FRRQGKVVPPTNGKKF 106

Query: 127 RGVRQRPWGKWAAEIRDPARRVRLWLGTYDTAEEAARVYDNAAIKLRGPDALTNFSTPPP 186
           RGVRQRPWGKWAAEIRDPARRVRLWLGTYDTAEEAA VYDNAAI+LRGPDALTNF+TPPP
Sbjct: 107 RGVRQRPWGKWAAEIRDPARRVRLWLGTYDTAEEAAMVYDNAAIQLRGPDALTNFATPPP 166

Query: 187 AVEVEVEVEKPETTINVSATATVSG--YESGEESHCHNLSSPTSVLNFRTHSSEESEQEK 244
                  V  PE  +  +   +VSG  Y+S EES  HNLSSPTSVL+FRT S EES  EK
Sbjct: 167 -------VPMPEKEVETANIPSVSGSYYDSSEES--HNLSSPTSVLHFRTPSPEES--EK 215

Query: 245 PPKDEEIQGETTTTA----VLCDDSSGGGDYLPLDLPFLDEFFSNVPTPGLSFFHDDGGN 300
           PPK +++Q             C   +   +    + P  D  F   P+P    F DD   
Sbjct: 216 PPKSDDLQKPPAPFVDDQFHECQGETSFTEEYHTEFPRFDYDF-KFPSPEAPIFLDD--- 271

Query: 301 PAAPM-FQDSIF---FSTDEFLDTVPQDFGGDFTFSTTSSYPSSSALCQVDDYFQDIGDL 356
              P+ F+DSI+   FS  E    +P+DFG        S   SSS     DDYFQDI  L
Sbjct: 272 --QPLFFEDSIWNDDFS--EIFTNLPEDFG--------SPLLSSSIGQGGDDYFQDI--L 317

Query: 357 FSADPPLV 364
             +DP +V
Sbjct: 318 MGSDPLVV 325

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225426038|ref|XP_002271526.1| PREDICTED: ethylene-responsive transcription factor CRF2 [Vitis vinifera]

 Score =  255 bits (652), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 159/359 (44%), Positives = 208/359 (57%), Gaps = 41/359 (11%)

Query: 7   LCPIKYTVHRNVTKKFTKPSLKSNKRI--ADERRVVRILTTDHDATDSSSDEEGEFFSRQ 64
           L PIKY+ HR  TK  T  S K   R   AD  R+VRI  TD DATDSSSDEEGE F+RQ
Sbjct: 2   LSPIKYSEHRKRTKLLTTSSEKFTGRSMNADGPRIVRISVTDGDATDSSSDEEGELFARQ 61

Query: 65  RVKRYVSEINIETSCSSSSKNSSSNAAGAVGSNRKRVAADNMNNDAARPLRQASQTTNGK 124
           RVK++V+EI I++    +S  ++   + +  + RK+    +     A+ +RQ ++ + GK
Sbjct: 62  RVKKFVNEITIQSCSGENSDGTTVWRSRSARNGRKK----STGKGEAQAVRQLAKPSTGK 117

Query: 125 KFRGVRQRPWGKWAAEIRDPARRVRLWLGTYDTAEEAARVYDNAAIKLRGPDALTNFSTP 184
           KFRGVRQRPWGKWAAEIRDP RRVRLWLGTYDTAEEAA VYDNAAI+LRGPDALTNF++P
Sbjct: 118 KFRGVRQRPWGKWAAEIRDPLRRVRLWLGTYDTAEEAAMVYDNAAIQLRGPDALTNFASP 177

Query: 185 PPAVEVEVEVEKPETTINVSATATVSGYESGEESHCHNLSSPTSVLNFRTHSSEESEQEK 244
           P   + ++E              TV+   SGEESH +NL SPTSVL +    +EE+E + 
Sbjct: 178 PAVTKPKIE------------PVTVTCSSSGEESH-NNLCSPTSVLRY---INEEAESQG 221

Query: 245 PPKDEEIQGETTTTAVLCDDSSGGGDYLPLDLPFLDEFFSNVPTPGLSFFHDDGGNPAAP 304
           P  +   Q  +T    +  + +G  D   LD+   D  F N                 A 
Sbjct: 222 PIPETPKQTRSTELPRIIGNDTGVSDNF-LDVSEFDTLFVN----------------DAF 264

Query: 305 MFQDSI--FFSTDEFLDTVPQDFGGDFTFSTTSSYPSSSALCQVDDYFQDIGDLFSADP 361
            FQ S+  FF     LD++ ++   D    ++  +        VD+YFQDIGDLF +DP
Sbjct: 265 DFQSSVPEFFGETNLLDSILREDCSDIFLKSSEDFGFRFPTSPVDEYFQDIGDLFVSDP 323

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449531334|ref|XP_004172641.1| PREDICTED: ethylene-responsive transcription factor CRF4-like, partial [Cucumis sativus]

 Score =  254 bits (649), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 177/358 (49%), Positives = 211/358 (58%), Gaps = 54/358 (15%)

Query: 15  HRNVTKKFTKPSLKSNKRIADERRVVRILTTDHDATDSSSDEEGEFFSRQRVKRYVSEIN 74
           HRN T KF+     + K    E RVVRI  TD DATDSSSDE+ +FF RQRVK+Y++EI 
Sbjct: 1   HRNFTNKFS-----AKKHHQSESRVVRISVTDPDATDSSSDED-DFFERQRVKKYINEIK 54

Query: 75  IETSCSSSSKNSSSNAAGAVGSNRKRVAADNMNNDAARPLRQASQTTNGKKFRGVRQRPW 134
           I++ C ++           + S RKR A D       R   +    TNGKKFRGVRQRPW
Sbjct: 55  IQSGCRNN----------LLPSCRKRPAGDRSE---FRRQGKVVPPTNGKKFRGVRQRPW 101

Query: 135 GKWAAEIRDPARRVRLWLGTYDTAEEAARVYDNAAIKLRGPDALTNFSTPPPAVEVEVEV 194
           GKWAAEIRDPARRVRLWLGTYDTAEEAA VYDNAAI+LRGPDALTNF+TPPP    E EV
Sbjct: 102 GKWAAEIRDPARRVRLWLGTYDTAEEAAMVYDNAAIQLRGPDALTNFATPPPVPMPEKEV 161

Query: 195 EKPETTINVSATATVSGYESGEESHCHNLSSPTSVLNFRTHSSEESEQEKPPKDEEIQGE 254
           E    T N+ + +  S Y+S EES  HNLSSPTSVL+FRT S EES  EKPPK +++Q  
Sbjct: 162 E----TANIPSVSG-SYYDSSEES--HNLSSPTSVLHFRTPSPEES--EKPPKSDDLQKP 212

Query: 255 TTTTA----VLCDDSSGGGDYLPLDLPFLDEFFSNVPTPGLSFFHDDGGNPAAPM-FQDS 309
                      C   +   +    + P  D  F   P+P    F DD      P+ F+DS
Sbjct: 213 PAPFVDDQFHECQGETSFTEEYHTEFPRFDYDF-KFPSPEAPIFLDD-----QPLFFEDS 266

Query: 310 IF---FSTDEFLDTVPQDFGGDFTFSTTSSYPSSSALCQVDDYFQDIGDLFSADPPLV 364
           I+   FS  E    +P+DFG        S   SSS     DDYFQDI  L  +DP +V
Sbjct: 267 IWNDDFS--EIFTNLPEDFG--------SPLLSSSIGQGGDDYFQDI--LMGSDPLVV 312

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	367
TAIR|locus:2132962	335	CRF4 "AT4G27950" [Arabidopsis	0.588	0.644	0.406	3.9e-37
TAIR|locus:2136078	287	CRF1 "AT4G11140" [Arabidopsis	0.226	0.289	0.602	1e-34
TAIR|locus:2128429	343	CRF2 "AT4G23750" [Arabidopsis	0.307	0.329	0.553	1.7e-34
TAIR|locus:2154272	354	CRF3 "AT5G53290" [Arabidopsis	0.607	0.629	0.398	7.4e-34
TAIR|locus:2062954	294	CRF5 "AT2G46310" [Arabidopsis	0.277	0.346	0.537	2.3e-27
TAIR|locus:2076720	315	CRF6 "AT3G61630" [Arabidopsis	0.283	0.330	0.516	5.6e-25
TAIR|locus:2167659	200	ERF9 "erf domain protein 9" [A	0.174	0.32	0.636	1.1e-20
TAIR|locus:2090975	379	RAP2.2 "related to AP2 2" [Ara	0.198	0.192	0.561	2.5e-20
TAIR|locus:2183861	212	Rap2.6L "related to AP2 6l" [A	0.158	0.273	0.655	2.8e-20
TAIR|locus:2197076	358	RAP2.12 "related to AP2 12" [A	0.177	0.181	0.602	4.6e-20

TAIR|locus:2132962 CRF4 "AT4G27950" [Arabidopsis thaliana (taxid:3702)]

 Score = 399 (145.5 bits), Expect = 3.9e-37, P = 3.9e-37
 Identities = 96/236 (40%), Positives = 130/236 (55%)

Query:     1 MEQSSSLCPIKYTVHRNVTKKFTKPSLKSNKR-IADERRVVRILXXXXXXXXXXXXXXXX 59
             M++   L P+KYT H+ V +K+TK S    K  + D  R+VR+                 
Sbjct:     3 MDEFMDLRPVKYTEHKTVIRKYTKKSSMERKTSVRDSARLVRVSMTDRDATDSSSDEEEF 62

Query:    60 XXXRQRVKRYVSEINIETXXXXXXXXXXXXXXXXXXXXRKRVAADNMNNDAARPLRQASQ 119
                R+RVKR ++EI +E                     RKR+   N+++   +P   +  
Sbjct:    63 LFPRRRVKRLINEIRVEPSSSSTGDVSASPTKD-----RKRI---NVDSTVQKP---SVS 111

Query:   120 TTNGKKFRGVRQRPWGKWAAEIRDPARRVRLWLGTYDTAEEAARVYDNAAIKLRGPDALT 179
               N KK+RGVRQRPWGKWAAEIRDP +R R+WLGT+ TAEEAA VYDNAAIKLRGPDALT
Sbjct:   112 GQNQKKYRGVRQRPWGKWAAEIRDPEQRRRIWLGTFATAEEAAIVYDNAAIKLRGPDALT 171

Query:   180 NFSTXXXXXXXXXXXXXXXTTINVSATATVSGYESGEESHCHNLSSPTSVLNFRTH 235
             NF+                + ++VS +      ES ++S   +LSSPTSVLN++T+
Sbjct:   172 NFTVQPEPEPVQEQEQEPESNMSVSIS------ESMDDSQ--HLSSPTSVLNYQTY 219

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0042991 "transcription factor import into nucleus" evidence=IDA

GO:0048366 "leaf development" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2136078 CRF1 "AT4G11140" [Arabidopsis thaliana (taxid:3702)]

 Score = 279 (103.3 bits), Expect = 1.0e-34, Sum P(3) = 1.0e-34
 Identities = 56/93 (60%), Positives = 70/93 (75%)

Query:    99 KRVAADNMNNDAARPLRQASQ----------TTNGKKFRGVRQRPWGKWAAEIRDPARRV 148
             K V  D++ +D  +P+++  +          TT  +KFRGVRQRPWGKWAAEIRDP+RRV
Sbjct:    50 KEVVLDSVVSDKEKPMKKKRKKRVVTVPVVVTTATRKFRGVRQRPWGKWAAEIRDPSRRV 109

Query:   149 RLWLGTYDTAEEAARVYDNAAIKLRGPDALTNF 181
             R+WLGT+DTAEEAA VYDNAAI+LRGP+A  NF
Sbjct:   110 RVWLGTFDTAEEAAIVYDNAAIQLRGPNAELNF 142

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0042991 "transcription factor import into nucleus" evidence=RCA;IDA

GO:0048366 "leaf development" evidence=RCA;IMP

GO:0048825 "cotyledon development" evidence=RCA;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0006406 "mRNA export from nucleus" evidence=RCA

GO:0006606 "protein import into nucleus" evidence=RCA

GO:0009220 "pyrimidine ribonucleotide biosynthetic process" evidence=RCA

GO:0009640 "photomorphogenesis" evidence=RCA

GO:0009694 "jasmonic acid metabolic process" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA

GO:0009845 "seed germination" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0009933 "meristem structural organization" evidence=RCA

GO:0010162 "seed dormancy process" evidence=RCA

GO:0010182 "sugar mediated signaling pathway" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0010564 "regulation of cell cycle process" evidence=RCA

GO:0016567 "protein ubiquitination" evidence=RCA

GO:0019915 "lipid storage" evidence=RCA

GO:0050826 "response to freezing" evidence=RCA

GO:0051301 "cell division" evidence=RCA

TAIR|locus:2128429 CRF2 "AT4G23750" [Arabidopsis thaliana (taxid:3702)]

 Score = 321 (118.1 bits), Expect = 1.7e-34, Sum P(2) = 1.7e-34
 Identities = 67/121 (55%), Positives = 82/121 (67%)

Query:    63 RQRVKRYVSEINIETXXXXXXXXXXXXXXXXXXXXRKRVAADNMNNDAARPLRQASQTTN 122
             R+RVK++V+E+ +++                    +KR      +     P+  A+ TT 
Sbjct:    65 RRRVKKFVNEVYLDSGAVVTGSCGQMES-------KKRQKRAVKSESTVSPVVSATTTTT 117

Query:   123 G-KKFRGVRQRPWGKWAAEIRDPARRVRLWLGTYDTAEEAARVYDNAAIKLRGPDALTNF 181
             G KKFRGVRQRPWGKWAAEIRDP +RVRLWLGTY+TAEEAA VYDNAAI+LRGPDALTNF
Sbjct:   118 GEKKFRGVRQRPWGKWAAEIRDPLKRVRLWLGTYNTAEEAAMVYDNAAIQLRGPDALTNF 177

Query:   182 S 182
             S
Sbjct:   178 S 178

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;ISS;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0042991 "transcription factor import into nucleus" evidence=RCA;IDA

GO:0048825 "cotyledon development" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0048364 "root development" evidence=IEP

GO:0042802 "identical protein binding" evidence=IPI

GO:0006606 "protein import into nucleus" evidence=RCA

TAIR|locus:2154272 CRF3 "AT5G53290" [Arabidopsis thaliana (taxid:3702)]

 Score = 368 (134.6 bits), Expect = 7.4e-34, P = 7.4e-34
 Identities = 98/246 (39%), Positives = 130/246 (52%)

Query:     1 MEQSSSLCPIKYTVHRNVTKKFTKPSLKSNKRIADERRVVRILXXXXXXXXXXXXXXXXX 60
             M++     P+KYT H+    K+TK   KS+++++  + + ++                  
Sbjct:     1 MDEYIDFRPLKYTEHKTSMTKYTK---KSSEKLSGGKSLKKVSICYTDPDATDSSSDEDE 57

Query:    61 XX----RQRVKRYVSEINIETXXXXXXXXXXXXXXXXXXXXRKRVAA--DNMNNDAA--- 111
                   R+RVKR+V+EI +E                     RKR+++  D   + A+   
Sbjct:    58 EDFLFPRRRVKRFVNEITVEPSCNNVVTGVSMKD-------RKRLSSSSDETQSPASSRQ 110

Query:   112 RPLRQASQTTNGKKFRGVRQRPWGKWAAEIRDPARRVRLWLGTYDTAEEAARVYDNAAIK 171
             RP  + S +   KKFRGVRQRPWGKWAAEIRDP +R R+WLGT++TAEEAA VYDNAAI+
Sbjct:   111 RPNNKVSVSGQIKKFRGVRQRPWGKWAAEIRDPEQRRRIWLGTFETAEEAAVVYDNAAIR 170

Query:   172 LRGPDALTNFSTXXXXXXXXXX---XXXXXTTINVSATATVSGYESGEESHCHNLSSPTS 228
             LRGPDALTNFS                     I  + T T S  ES EE   H LSSPTS
Sbjct:   171 LRGPDALTNFSIPPQEEEEEEEPEPVIEEKPVIMTTPTPTTSSSESTEEDLQH-LSSPTS 229

Query:   229 VLNFRT 234
             VLN R+
Sbjct:   230 VLNHRS 235

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0042991 "transcription factor import into nucleus" evidence=IDA

GO:0048366 "leaf development" evidence=IMP

GO:0048825 "cotyledon development" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0006606 "protein import into nucleus" evidence=RCA

GO:0009165 "nucleotide biosynthetic process" evidence=RCA

TAIR|locus:2062954 CRF5 "AT2G46310" [Arabidopsis thaliana (taxid:3702)]

 Score = 250 (93.1 bits), Expect = 2.3e-27, Sum P(3) = 2.3e-27
 Identities = 58/108 (53%), Positives = 70/108 (64%)

Query:   125 KFRGVRQRPWGKWAAEIRDPARRVRLWLGTYDTAEEAARVYDNAAIKLRGPDALTNFSTX 184
             K+RGVRQRPWGK+AAEIRDP+ R RLWLGT+ TAEEAA  YD AAI+++G +A TNF T 
Sbjct:    98 KYRGVRQRPWGKFAAEIRDPSSRTRLWLGTFATAEEAAIGYDRAAIRIKGHNAQTNFLTP 157

Query:   185 XXXXXXXXXXXXXXTTINVSATATVSGYESGEESHCHNLSSPTSVLNF 232
                             I++    TVSG +S  ES   +L SPTSVL F
Sbjct:   158 PPSPTTEVLPET--PVIDLE---TVSGCDSARESQI-SLCSPTSVLRF 199

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0009793 "embryo development ending in seed dormancy" evidence=IGI

GO:0042991 "transcription factor import into nucleus" evidence=RCA;IDA

GO:0048366 "leaf development" evidence=IMP

GO:0048825 "cotyledon development" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2076720 CRF6 "AT3G61630" [Arabidopsis thaliana (taxid:3702)]

 Score = 257 (95.5 bits), Expect = 5.6e-25, Sum P(2) = 5.6e-25
 Identities = 61/118 (51%), Positives = 72/118 (61%)

Query:   118 SQTTNGKKFRGVRQRPWGKWAAEIRDPARRVRLWLGTYDTAEEAARVYDNAAIKLRGPDA 177
             S +   KK+RGVRQRPWGK+AAEIRDP+ R R+WLGT+ TAEEAA  YD AAI L+GP A
Sbjct:    97 STSVKPKKYRGVRQRPWGKFAAEIRDPSSRTRIWLGTFVTAEEAAIAYDRAAIHLKGPKA 156

Query:   178 LTNFSTXXXXXXXXXXXXXXXTTINVSATATVSGYESGEESHCHNLSSPTSVLNFRTH 235
             LTNF T               T   V    TVS  + G +S   +L SPTSVL F  +
Sbjct:   157 LTNFLTPP-------------TPTPVIDLQTVSACDYGRDSR-QSLHSPTSVLRFNVN 200

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;ISS;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0009793 "embryo development ending in seed dormancy" evidence=IGI

GO:0042991 "transcription factor import into nucleus" evidence=RCA;IDA

GO:0048366 "leaf development" evidence=IMP

GO:0048825 "cotyledon development" evidence=IMP

GO:0005737 "cytoplasm" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2167659 ERF9 "erf domain protein 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 221 (82.9 bits), Expect = 1.1e-20, Sum P(2) = 1.1e-20
 Identities = 42/66 (63%), Positives = 52/66 (78%)

Query:   118 SQTTNGKK--FRGVRQRPWGKWAAEIRDPARRVRLWLGTYDTAEEAARVYDNAAIKLRGP 175
             + TT  K+  FRGVR+RPWG++AAEIRDP ++ R+WLGT+DTAEEAAR YD AA + RG 
Sbjct:    23 TMTTMRKEVHFRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDTAAREFRGS 82

Query:   176 DALTNF 181
              A TNF
Sbjct:    83 KAKTNF 88

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=TAS

GO:0016020 "membrane" evidence=IDA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=TAS

TAIR|locus:2090975 RAP2.2 "related to AP2 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 225 (84.3 bits), Expect = 2.5e-20, Sum P(2) = 2.5e-20
 Identities = 41/73 (56%), Positives = 53/73 (72%)

Query:   109 DAARPLRQASQTTNGKKFRGVRQRPWGKWAAEIRDPARRVRLWLGTYDTAEEAARVYDNA 168
             ++A    ++S+     ++RG+RQRPWGKWAAEIRDP +  R WLGT+DTAEEAAR YD A
Sbjct:   111 ESAEQAEKSSKRKRKNQYRGIRQRPWGKWAAEIRDPRKGSREWLGTFDTAEEAARAYDAA 170

Query:   169 AIKLRGPDALTNF 181
             A ++RG  A  NF
Sbjct:   171 ARRIRGTKAKVNF 183

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;IC

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0001666 "response to hypoxia" evidence=IMP

GO:0010468 "regulation of gene expression" evidence=IEP

GO:0006487 "protein N-linked glycosylation" evidence=RCA

GO:0046685 "response to arsenic-containing substance" evidence=RCA

TAIR|locus:2183861 Rap2.6L "related to AP2 6l" [Arabidopsis thaliana (taxid:3702)]

 Score = 218 (81.8 bits), Expect = 2.8e-20, Sum P(2) = 2.8e-20
 Identities = 38/58 (65%), Positives = 46/58 (79%)

Query:   124 KKFRGVRQRPWGKWAAEIRDPARRVRLWLGTYDTAEEAARVYDNAAIKLRGPDALTNF 181
             + +RGVRQRPWGKWAAEIRDP +  R+WLGT++TAEEAA  YD AA+K +G  A  NF
Sbjct:    37 RHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAEEAALAYDRAALKFKGTKAKLNF 94

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0009414 "response to water deprivation" evidence=IEP

GO:0009651 "response to salt stress" evidence=IMP

GO:0009723 "response to ethylene stimulus" evidence=IEP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0071497 "cellular response to freezing" evidence=IEP

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0010260 "organ senescence" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

GO:0046482 "para-aminobenzoic acid metabolic process" evidence=RCA

TAIR|locus:2197076 RAP2.12 "related to AP2 12" [Arabidopsis thaliana (taxid:3702)]

 Score = 218 (81.8 bits), Expect = 4.6e-20, Sum P(2) = 4.6e-20
 Identities = 41/68 (60%), Positives = 50/68 (73%)

Query:   117 ASQTTNGKK---FRGVRQRPWGKWAAEIRDPARRVRLWLGTYDTAEEAARVYDNAAIKLR 173
             A ++ N K+   +RG+RQRPWGKWAAEIRDP    R+WLGT+ TAEEAAR YD AA ++R
Sbjct:   113 AEKSANRKRKNQYRGIRQRPWGKWAAEIRDPREGARIWLGTFKTAEEAARAYDAAARRIR 172

Query:   174 GPDALTNF 181
             G  A  NF
Sbjct:   173 GSKAKVNF 180

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;IC;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0001666 "response to hypoxia" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0070483 "detection of hypoxia" evidence=IEP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SUE3	CRF4_ARATH	No assigned EC number	0.4264	0.8392	0.9194	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: ERF86 AP2/ERF domain-containing transcription factor (328 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	367
smart00380	64	smart00380, AP2, DNA-binding domain in plant prote	2e-35
cd00018	61	cd00018, AP2, DNA-binding domain found in transcri	2e-33
pfam00847	53	pfam00847, AP2, AP2 domain	6e-16

>gnl|CDD|197689 smart00380, AP2, DNA-binding domain in plant proteins such as APETALA2 and EREBPs

 Score =  123 bits (311), Expect = 2e-35
 Identities = 41/64 (64%), Positives = 46/64 (71%)

Query: 125 KFRGVRQRPWGKWAAEIRDPARRVRLWLGTYDTAEEAARVYDNAAIKLRGPDALTNFSTP 184
           K+RGVRQRPWGKW AEIRDP++  R+WLGT+DTAEEAAR YD AA K RG  A  NF   
Sbjct: 1   KYRGVRQRPWGKWVAEIRDPSKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPNS 60

Query: 185 PPAV 188
               
Sbjct: 61  LYDS 64

Length = 64

>gnl|CDD|237985 cd00018, AP2, DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

 Score =  118 bits (297), Expect = 2e-33
 Identities = 42/58 (72%), Positives = 48/58 (82%)

Query: 124 KKFRGVRQRPWGKWAAEIRDPARRVRLWLGTYDTAEEAARVYDNAAIKLRGPDALTNF 181
            K+RGVRQRPWGKW AEIRDP+   R+WLGT+DTAEEAAR YD AA+KLRG  A+ NF
Sbjct: 1   SKYRGVRQRPWGKWVAEIRDPSGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNF 58

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies. Length = 61

>gnl|CDD|216148 pfam00847, AP2, AP2 domain

 Score = 71.1 bits (175), Expect = 6e-16
 Identities = 27/54 (50%), Positives = 34/54 (62%), Gaps = 4/54 (7%)

Query: 124 KKFRGVRQRP-WGKWAAEIRDPA--RRVRLWLGTYDTAEEAARVYDNAAIKLRG 174
             ++GVR    WG+W AEIRDP   ++ R  LGT+ T EEAAR    A +KLRG
Sbjct: 1   SGYKGVRYDKRWGRWVAEIRDPGEKKKKRFSLGTFGT-EEAARAAIAARLKLRG 53

This 60 amino acid residue domain can bind to DNA and is found in transcription factor proteins. Length = 53

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	367
smart00380	64	AP2 DNA-binding domain in plant proteins such as A	99.82
cd00018	61	AP2 DNA-binding domain found in transcription regu	99.81
PHA00280	121	putative NHN endonuclease	99.36
PF00847	56	AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-	99.04
PF14657	46	Integrase_AP2: AP2-like DNA-binding integrase doma	81.28

>smart00380 AP2 DNA-binding domain in plant proteins such as APETALA2 and EREBPs

Probab=99.82  E-value=3.2e-20  Score=142.39  Aligned_cols=64  Identities=64%  Similarity=1.110  Sum_probs=61.1

Q ss_pred             ceeEEEECCCCcEEEEEecCCCCeEEeccCCCCHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCc
Q 047455          125 KFRGVRQRPWGKWAAEIRDPARRVRLWLGTYDTAEEAARVYDNAAIKLRGPDALTNFSTPPPAV  188 (367)
Q Consensus       125 ~yRGVr~r~~GKW~AeIr~~~~~kri~LGtFdT~EeAArAYD~AAikl~G~~A~tNFp~s~y~~  188 (367)
                      +|+||+++++|||+|+|+++.+++++|||+|+|+||||+|||.|+++++|..+.+|||.+.|+.
T Consensus         1 ~~kGV~~~~~gkw~A~I~~~~~~k~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~~y~~   64 (64)
T smart00380        1 KYRGVRQRPWGKWVAEIRDPSKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPNSLYDS   64 (64)
T ss_pred             CEeeEEeCCCCeEEEEEEecCCCcEEecCCCCCHHHHHHHHHHHHHHhcCCccccCCCCccCCC
Confidence            5999999999999999999889999999999999999999999999999999999999999863

>cd00018 AP2 DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

Probab=99.81  E-value=3.9e-20  Score=140.21  Aligned_cols=61  Identities=69%  Similarity=1.232  Sum_probs=57.9

Q ss_pred             CceeEEEECCCCcEEEEEecCCCCeEEeccCCCCHHHHHHHHHHHHHHHhCCCCCCCCCCC
Q 047455          124 KKFRGVRQRPWGKWAAEIRDPARRVRLWLGTYDTAEEAARVYDNAAIKLRGPDALTNFSTP  184 (367)
Q Consensus       124 S~yRGVr~r~~GKW~AeIr~~~~~kri~LGtFdT~EeAArAYD~AAikl~G~~A~tNFp~s  184 (367)
                      |+|+||+++++|||+|+|+++..++++|||+|+|+||||+|||.|+++++|..+.+|||.+
T Consensus         1 s~~~GV~~~~~gkw~A~I~~~~~gk~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~   61 (61)
T cd00018           1 SKYRGVRQRPWGKWVAEIRDPSGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFPDS   61 (61)
T ss_pred             CCccCEEECCCCcEEEEEEeCCCCceEccCCCCCHHHHHHHHHHHHHHhcCCccccCCCCC
Confidence            6899999999999999999866699999999999999999999999999999999999974

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies.

>PHA00280 putative NHN endonuclease

Probab=99.36  E-value=1.4e-12  Score=112.89  Aligned_cols=59  Identities=19%  Similarity=0.227  Sum_probs=52.2

Q ss_pred             ccCCCCCceeEEEECCC-CcEEEEEecCCCCeEEeccCCCCHHHHHHHHHHHHHHHhCCCCCC
Q 047455          118 SQTTNGKKFRGVRQRPW-GKWAAEIRDPARRVRLWLGTYDTAEEAARVYDNAAIKLRGPDALT  179 (367)
Q Consensus       118 ~~~~~tS~yRGVr~r~~-GKW~AeIr~~~~~kri~LGtFdT~EeAArAYD~AAikl~G~~A~t  179 (367)
                      .++.|+|+|+||++++. |||.|+|+  ..||+++||.|+++|+|+.||+ |+++|+|.+|..
T Consensus        61 ~~~~N~SG~kGV~~~k~~~kw~A~I~--~~gK~~~lG~f~~~e~A~~a~~-~~~~lhGeFa~~  120 (121)
T PHA00280         61 TPKSNTSGLKGLSWSKEREMWRGTVT--AEGKQHNFRSRDLLEVVAWIYR-TRRELHGQFARF  120 (121)
T ss_pred             CCCCCCCCCCeeEEecCCCeEEEEEE--ECCEEEEcCCCCCHHHHHHHHH-HHHHHhhccccC
Confidence            45678999999987655 99999999  4999999999999999999997 788999998853

>PF00847 AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-related genes transcriptional activator binds to the GCC-box pathogenesis-related promoter element and activates the plant's defence genes

Probab=99.04  E-value=2.8e-10  Score=84.20  Aligned_cols=52  Identities=33%  Similarity=0.507  Sum_probs=45.0

Q ss_pred             CceeEEEECC-CCcEEEEEecCCC---CeEEeccCCCCHHHHHHHHHHHHHHHhCC
Q 047455          124 KKFRGVRQRP-WGKWAAEIRDPAR---RVRLWLGTYDTAEEAARVYDNAAIKLRGP  175 (367)
Q Consensus       124 S~yRGVr~r~-~GKW~AeIr~~~~---~kri~LGtFdT~EeAArAYD~AAikl~G~  175 (367)
                      |+|+||++.+ .++|+|+|++...   +++++||.|++++||++||+.++++++|+
T Consensus         1 s~~~GV~~~~~~~~W~a~i~~~~~~g~~k~f~~g~fg~~~eA~~~a~~~r~~~~~e   56 (56)
T PF00847_consen    1 SGYKGVSWDKRRGRWRAQIRVWSENGKRKRFSVGKFGFEEEAKRAAIEARKELEGE   56 (56)
T ss_dssp             SSSTTEEEETTTTEEEEEEEECCCTTEEEEEEECCCCCHHHHHHHHHHHHHHCTS-
T ss_pred             CCcEEEEEcCCCCEEEEEEEEcccCcccEEEeCccCCCHHHHHHHHHHHHHHhcCC
Confidence            6899998766 5999999998422   49999999999999999999999999874

Ethylene, chemically the simplest plant hormone, participates in a number of stress responses and developmental processes: e.g., fruit ripening, inhibition of stem and root elongation, promotion of seed germination and flowering, senescence of leaves and flowers, and sex determination []. DNA sequence elements that confer ethylene responsiveness have been shown to contain two 11bp GCC boxes, which are necessary and sufficient for transcriptional control by ethylene. Ethylene responsive element binding proteins (EREBPs) have now been identified in a variety of plants. The proteins share a similar domain of around 59 amino acids, which interacts directly with the GCC box in the ERE.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3IGM_A 3GCC_A 1GCC_A 2GCC_A.

>PF14657 Integrase_AP2: AP2-like DNA-binding integrase domain

Probab=81.28  E-value=5.7  Score=28.54  Aligned_cols=38  Identities=16%  Similarity=0.235  Sum_probs=29.8

Q ss_pred             cEEEEE--ecCCCC--eEEeccCCCCHHHHHHHHHHHHHHHh
Q 047455          136 KWAAEI--RDPARR--VRLWLGTYDTAEEAARVYDNAAIKLR  173 (367)
Q Consensus       136 KW~AeI--r~~~~~--kri~LGtFdT~EeAArAYD~AAikl~  173 (367)
                      +|...|  .++..|  ++++-+-|.|..||..+...+...+.
T Consensus         1 ~w~~~v~g~~~~~Gkrk~~~k~GF~TkkeA~~~~~~~~~~~~   42 (46)
T PF14657_consen    1 TWYYRVYGYDDETGKRKQKTKRGFKTKKEAEKALAKIEAELE   42 (46)
T ss_pred             CEEEEEEEEECCCCCEEEEEcCCCCcHHHHHHHHHHHHHHHH
Confidence            588888  355455  77899999999999999888766653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	367
2gcc_A	70	Solution Structure Of The Gcc-Box Binding Domain, N		6e-17
1gcc_A	63	Solution Nmr Structure Of The Complex Of Gcc-Box Bi		4e-16

>pdb|2GCC|A Chain A, Solution Structure Of The Gcc-Box Binding Domain, Nmr, Minimized Mean Structure Length = 70

Iteration: 1
 Score = 85.1 bits (209), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 40/62 (64%), Positives = 49/62 (79%), Gaps = 1/62 (1%)
Query: 121 TNGKKFRGVRQRPWGKWAAEIRDPARR-VRLWLGTYDTAEEAARVYDNAAIKLRGPDALT 179
             GK +RGVRQRPWGK+AAEIRDPA+   R+WLGT++TAE+AA  YD AA ++RG  AL 
Sbjct: 1   AKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALL 60
Query: 180 NF 181
           NF
Sbjct: 61  NF 62

>pdb|1GCC|A Chain A, Solution Nmr Structure Of The Complex Of Gcc-Box Binding Domain Of Aterf1 And Gcc-Box Dna, Minimized Average Structure Length = 63

Iteration: 1
 Score = 82.0 bits (201), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 39/59 (66%), Positives = 48/59 (81%), Gaps = 1/59 (1%)
Query: 124 KKFRGVRQRPWGKWAAEIRDPARR-VRLWLGTYDTAEEAARVYDNAAIKLRGPDALTNF 181
           K +RGVRQRPWGK+AAEIRDPA+   R+WLGT++TAE+AA  YD AA ++RG  AL NF
Sbjct: 1   KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNF 59
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	367
1gcc_A	63	Ethylene responsive element binding factor 1; tran	3e-37

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A Length = 63

 Score =  127 bits (321), Expect = 3e-37
 Identities = 39/59 (66%), Positives = 48/59 (81%), Gaps = 1/59 (1%)

Query: 124 KKFRGVRQRPWGKWAAEIRDPARR-VRLWLGTYDTAEEAARVYDNAAIKLRGPDALTNF 181
           K +RGVRQRPWGK+AAEIRDPA+   R+WLGT++TAE+AA  YD AA ++RG  AL NF
Sbjct: 1   KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNF 59

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	367
1gcc_A	63	Ethylene responsive element binding factor 1; tran	99.89
3igm_B	77	PF14_0633 protein; AP2 domain, specific transcript	84.2

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A

Probab=99.89  E-value=3.9e-24  Score=163.96  Aligned_cols=60  Identities=63%  Similarity=1.145  Sum_probs=57.0

Q ss_pred             ceeEEEECCCCcEEEEEecCCC-CeEEeccCCCCHHHHHHHHHHHHHHHhCCCCCCCCCCC
Q 047455          125 KFRGVRQRPWGKWAAEIRDPAR-RVRLWLGTYDTAEEAARVYDNAAIKLRGPDALTNFSTP  184 (367)
Q Consensus       125 ~yRGVr~r~~GKW~AeIr~~~~-~kri~LGtFdT~EeAArAYD~AAikl~G~~A~tNFp~s  184 (367)
                      +||||++++||||+|+|+++.. |+++|||+|+|+||||+|||.|+++++|..|.+|||.+
T Consensus         2 ~yrGV~~r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~   62 (63)
T 1gcc_A            2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR   62 (63)
T ss_dssp             CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred             CcccEeeCCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCc
Confidence            6999999999999999999874 79999999999999999999999999999999999974

>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}

Probab=84.20  E-value=0.68  Score=36.66  Aligned_cols=24  Identities=21%  Similarity=0.248  Sum_probs=19.4

Q ss_pred             CCCCceeEEEECCC-CcEEEEEecC
Q 047455          121 TNGKKFRGVRQRPW-GKWAAEIRDP  144 (367)
Q Consensus       121 ~~tS~yRGVr~r~~-GKW~AeIr~~  144 (367)
                      ...|+|.||++.+. +.|.|.-.+.
T Consensus         3 ~~~Sg~pGVsw~kR~~~WlA~W~e~   27 (77)
T 3igm_B            3 HMSSGYPGVSWNKRMCAWLAFFYDG   27 (77)
T ss_dssp             -CCSSSTTEEEETTTTEEEEEEEET
T ss_pred             CCCCCCCcEEeecCCceEEEEEecC
Confidence            35699999987766 9999998873

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	367
d1gcca_	63	d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cr	7e-32

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 63

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  112 bits (282), Expect = 7e-32
 Identities = 39/59 (66%), Positives = 48/59 (81%), Gaps = 1/59 (1%)

Query: 124 KKFRGVRQRPWGKWAAEIRDPAR-RVRLWLGTYDTAEEAARVYDNAAIKLRGPDALTNF 181
           K +RGVRQRPWGK+AAEIRDPA+   R+WLGT++TAE+AA  YD AA ++RG  AL NF
Sbjct: 1   KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNF 59

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	367
d1gcca_	63	GCC-box binding domain {Mouse-ear cress (Arabidops	99.9

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.90  E-value=1.6e-24  Score=164.77  Aligned_cols=60  Identities=63%  Similarity=1.132  Sum_probs=56.3

Q ss_pred             ceeEEEECCCCcEEEEEecCC-CCeEEeccCCCCHHHHHHHHHHHHHHHhCCCCCCCCCCC
Q 047455          125 KFRGVRQRPWGKWAAEIRDPA-RRVRLWLGTYDTAEEAARVYDNAAIKLRGPDALTNFSTP  184 (367)
Q Consensus       125 ~yRGVr~r~~GKW~AeIr~~~-~~kri~LGtFdT~EeAArAYD~AAikl~G~~A~tNFp~s  184 (367)
                      +||||++|++|||+|+|+++. +++++|||+|+|+||||+|||.||++++|.+|.+|||+.
T Consensus         2 ~yrGVr~r~~gkw~A~Ir~~~~~~~r~~LGtf~t~eeAArAYD~aa~~~~G~~a~~NFP~~   62 (63)
T d1gcca_           2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR   62 (63)
T ss_dssp             CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred             CcceEeECCCCCEEEEEecCCCCCcEeccccccCHHHHHHHHHHHHHHhcCCCcccCCCcc
Confidence            599999999999999999874 568999999999999999999999999999999999974