Citrus Sinensis ID: 047583

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70-------
Protein Sequence
ILSNAKQVLKLQNNAKNQCGVPKGHVAVYVGELEKKRFVVPISYLSPPPFVDLLKRAEEELGFHHPMGALTIPCRED
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHcccccccccccEEEEEEccccEEEEEEEcccccHHHHHHHHHHHHHHHccccccccEEEccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHccccccccccccEEEEEEccccccEEEEEEcHcccHHHHHHHHHHHHHHccccccccEEcccccc
Coil and Loop (DISEMBL)
ILSNAKQVLKLQNnaknqcgvpkghVAVYVGELEKKrfvvpisylspppfVDLLKRAEEelgfhhpmgaltipcred
Flexible Loop (DISEMBL)
ILSNAKQVLKLqnnaknqcgvpkGHVAVYVGELEKKRFVVPISYLSPPPFVDLLKRAEEElgfhhpmgaltipcred
Low Complexity Region (SEG)
ILSNAKQVLKLQNNAKNQCGVPKGHVAVYVGELEKKRFVVPISYLSPPPFVDLLKRAEEELGFHHPMGALTIPCRED
Disordered region (IsUnstruct)
****************NQCGVPKGHVAVYVGELEKKRFVVPISYLSPPPFVDLLKRAEEELGFHHPMGALTI*****
Disordered Region (DISOPRED)
************************HVAVYVGELEKKRFVVPISYLSPPPFVDLLKRAEEELGFHHPMGALTIPCR**
Disordered Region (DISEMBL)
ILSNAKQVLKLQNNAKNQCGVPKGHVAVYVGELEKKRFVVPISYLSPPPFVDLLKRAEEELGFHHPMGALTIPCRED
Disordered Region (DISPRO)
ILSNAKQVLKLQNNAKNQCGVPKGHVAVYVGELEKKRFVVPISYLSPPPFVDLLKRAEEELGFHHPMGALTIPCR**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
ILSNAKQVLKLQNNAKNQCGVPKGHVAVYVGELEKKRFVVPISYLSPPPFVDLLKRAEEELGFHHPMGALTIPCRED
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	77	2.2.26 [Sep-21-2011]
P33081	82	Auxin-induced protein 15A	no	no	0.805	0.756	0.619	3e-16
P33082	82	Auxin-induced protein X15	no	no	0.805	0.756	0.603	4e-16
P32295	92	Indole-3-acetic acid-indu	N/A	no	0.974	0.815	0.532	5e-16
P33083	90	Auxin-induced protein 6B	no	no	0.727	0.622	0.649	7e-16
P33080	92	Auxin-induced protein X10	no	no	0.727	0.608	0.614	1e-15
P33079	93	Auxin-induced protein 10A	no	no	0.805	0.666	0.555	2e-15

>sp|P33081|AX15A_SOYBN Auxin-induced protein 15A OS=Glycine max PE=2 SV=1

 Score = 83.6 bits (205), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 39/63 (61%), Positives = 47/63 (74%), Gaps = 1/63 (1%)

Query: 15 AKNQCGVPKGHVAVYVGELEKKRFVVPISYLSPPPFVDLLKRAEEELGFHHPMGALTIPC 74
          A      PKG++AVYVGE + KRFV+P+SYL+ P F DLL +AEEE G+ HPMG LTIPC
Sbjct: 11 ASKAADAPKGYLAVYVGE-KLKRFVIPVSYLNQPSFQDLLSQAEEEFGYDHPMGGLTIPC 69

Query: 75 RED 77
           ED
Sbjct: 70 SED 72

Glycine max (taxid: 3847)

>sp|P33082|AXX15_SOYBN Auxin-induced protein X15 OS=Glycine max PE=2 SV=1

 Score = 83.6 bits (205), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 38/63 (60%), Positives = 48/63 (76%), Gaps = 1/63 (1%)

Query: 15 AKNQCGVPKGHVAVYVGELEKKRFVVPISYLSPPPFVDLLKRAEEELGFHHPMGALTIPC 74
          A N    PKG++AVYVGE + KRFV+P+SY++ P F DLL +AEEE G+ HPMG LTIPC
Sbjct: 11 ASNAVDAPKGYLAVYVGE-KMKRFVIPVSYMNQPSFQDLLTQAEEEFGYDHPMGGLTIPC 69

Query: 75 RED 77
           E+
Sbjct: 70 SEE 72

Glycine max (taxid: 3847)

>sp|P32295|ARG7_VIGRR Indole-3-acetic acid-induced protein ARG7 OS=Vigna radiata var. radiata GN=ARG7 PE=2 SV=1

 Score = 83.2 bits (204), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 41/77 (53%), Positives = 54/77 (70%), Gaps = 2/77 (2%)

Query: 2  LSNAKQVLKLQNNAKNQC-GVPKGHVAVYVGELEKKRFVVPISYLSPPPFVDLLKRAEEE 60
          L   ++ L  +N A ++    PKG++AVYVGE   KRFV+P+S+L+ P F DLL +AEEE
Sbjct: 5  LPGIRKTLSARNEASSKVLDAPKGYLAVYVGE-NMKRFVIPVSHLNQPLFQDLLSQAEEE 63

Query: 61 LGFHHPMGALTIPCRED 77
           G+ HPMG LTIPC ED
Sbjct: 64 FGYDHPMGGLTIPCSED 80

Vigna radiata var. radiata (taxid: 3916)

>sp|P33083|AX6B_SOYBN Auxin-induced protein 6B OS=Glycine max PE=2 SV=1

 Score = 82.4 bits (202), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 37/57 (64%), Positives = 46/57 (80%), Gaps = 1/57 (1%)

Query: 21 VPKGHVAVYVGELEKKRFVVPISYLSPPPFVDLLKRAEEELGFHHPMGALTIPCRED 77
          V KG++AVYVGE + +RFV+P+SYL+ P F DLL +AEEE G+HHP G LTIPC ED
Sbjct: 25 VEKGYLAVYVGE-KMRRFVIPVSYLNKPSFQDLLSQAEEEFGYHHPNGGLTIPCSED 80

Glycine max (taxid: 3847)

>sp|P33080|AX10A_SOYBN Auxin-induced protein X10A OS=Glycine max PE=2 SV=1

 Score = 82.0 bits (201), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 35/57 (61%), Positives = 47/57 (82%), Gaps = 1/57 (1%)

Query: 21 VPKGHVAVYVGELEKKRFVVPISYLSPPPFVDLLKRAEEELGFHHPMGALTIPCRED 77
          VPKG++ VYVG+ + +RF++P+SYL+ P F DLL +AEEE G+ HPMG LTIPC+ED
Sbjct: 25 VPKGYLVVYVGD-KMRRFLIPVSYLNQPSFQDLLNQAEEEFGYDHPMGGLTIPCKED 80

Glycine max (taxid: 3847)

>sp|P33079|A10A5_SOYBN Auxin-induced protein 10A5 OS=Glycine max PE=2 SV=1

 Score = 80.9 bits (198), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 35/63 (55%), Positives = 48/63 (76%), Gaps = 1/63 (1%)

Query: 15 AKNQCGVPKGHVAVYVGELEKKRFVVPISYLSPPPFVDLLKRAEEELGFHHPMGALTIPC 74
          A  +  VPKG+ AVYVG+ + +RF +P+SYL+ P F +LL +AEEE G+ HPMG LTIPC
Sbjct: 20 ASKRVDVPKGYAAVYVGD-KMRRFTIPVSYLNEPSFQELLSQAEEEFGYDHPMGGLTIPC 78

Query: 75 RED 77
          +E+
Sbjct: 79 KEE 81

Glycine max (taxid: 3847)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	77
449518491	97	PREDICTED: auxin-induced protein 10A5-li	1.0	0.793	0.730	5e-26
449458554	206	PREDICTED: LOW QUALITY PROTEIN: uncharac	1.0	0.373	0.743	5e-26
449518495	97	PREDICTED: auxin-induced protein X10A-li	1.0	0.793	0.743	6e-26
449458560	97	PREDICTED: auxin-induced protein X10A-li	1.0	0.793	0.692	9e-25
449518493	97	PREDICTED: auxin-induced protein X10A-li	1.0	0.793	0.717	1e-24
449458562	97	PREDICTED: auxin-induced protein X10A-li	1.0	0.793	0.679	3e-24
225430947	97	PREDICTED: auxin-induced protein 15A [Vi	1.0	0.793	0.666	1e-23
225427874	100	PREDICTED: auxin-induced protein X10A [V	0.987	0.76	0.701	5e-23
449458650	197	PREDICTED: uncharacterized protein LOC10	1.0	0.390	0.666	7e-23
449458552	201	PREDICTED: uncharacterized protein LOC10	1.0	0.383	0.653	8e-23

>gi|449518491|ref|XP_004166275.1| PREDICTED: auxin-induced protein 10A5-like [Cucumis sativus]

 Score =  121 bits (304), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 57/78 (73%), Positives = 66/78 (84%), Gaps = 1/78 (1%)

Query: 1  ILSNAKQVLKLQN-NAKNQCGVPKGHVAVYVGELEKKRFVVPISYLSPPPFVDLLKRAEE 59
          IL NAKQ+LK+Q  +A+NQ  VPKGH+AVYVGE+++KRFVVPISYL  P FVDLL R+EE
Sbjct: 8  ILLNAKQILKMQAMSARNQSDVPKGHIAVYVGEIQRKRFVVPISYLKNPSFVDLLNRSEE 67

Query: 60 ELGFHHPMGALTIPCRED 77
          E GF HPMG LTIPCRED
Sbjct: 68 EFGFCHPMGGLTIPCRED 85

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449458554|ref|XP_004147012.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101212166 [Cucumis sativus]

 Score =  121 bits (303), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 58/78 (74%), Positives = 66/78 (84%), Gaps = 1/78 (1%)

Query: 1  ILSNAKQVLKLQN-NAKNQCGVPKGHVAVYVGELEKKRFVVPISYLSPPPFVDLLKRAEE 59
          IL NAKQVLK+Q  +A+NQ  VPKGH+AVYVGE+++KRFVVPISYL  P FVDLL R+EE
Sbjct: 8  ILLNAKQVLKMQAMSARNQSDVPKGHIAVYVGEIQRKRFVVPISYLKHPSFVDLLNRSEE 67

Query: 60 ELGFHHPMGALTIPCRED 77
          E GF HPMG LTIPCRED
Sbjct: 68 EFGFCHPMGGLTIPCRED 85

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449518495|ref|XP_004166277.1| PREDICTED: auxin-induced protein X10A-like [Cucumis sativus]

 Score =  121 bits (303), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 58/78 (74%), Positives = 66/78 (84%), Gaps = 1/78 (1%)

Query: 1  ILSNAKQVLKLQN-NAKNQCGVPKGHVAVYVGELEKKRFVVPISYLSPPPFVDLLKRAEE 59
          IL NAKQVLK+Q  +A+NQ  VPKGH+AVYVGE+++KRFVVPISYL  P FVDLL R+EE
Sbjct: 8  ILLNAKQVLKMQAMSARNQSDVPKGHIAVYVGEIQRKRFVVPISYLKHPSFVDLLNRSEE 67

Query: 60 ELGFHHPMGALTIPCRED 77
          E GF HPMG LTIPCRED
Sbjct: 68 EFGFCHPMGGLTIPCRED 85

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449458560|ref|XP_004147015.1| PREDICTED: auxin-induced protein X10A-like [Cucumis sativus] gi|449516365|ref|XP_004165217.1| PREDICTED: auxin-induced protein X10A-like [Cucumis sativus]

 Score =  117 bits (293), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 54/78 (69%), Positives = 65/78 (83%), Gaps = 1/78 (1%)

Query: 1  ILSNAKQVLKLQN-NAKNQCGVPKGHVAVYVGELEKKRFVVPISYLSPPPFVDLLKRAEE 59
          +L NAKQ +K+ N +++NQCGVPKGH+AVYVG++E+KRFVVPISYL+ P F  LLK AEE
Sbjct: 8  LLLNAKQFVKMHNVSSRNQCGVPKGHIAVYVGDIERKRFVVPISYLNHPSFSALLKSAEE 67

Query: 60 ELGFHHPMGALTIPCRED 77
          E GF HP G LTIPCRED
Sbjct: 68 EFGFKHPTGGLTIPCRED 85

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449518493|ref|XP_004166276.1| PREDICTED: auxin-induced protein X10A-like [Cucumis sativus]

 Score =  117 bits (292), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 56/78 (71%), Positives = 65/78 (83%), Gaps = 1/78 (1%)

Query: 1  ILSNAKQVLKLQN-NAKNQCGVPKGHVAVYVGELEKKRFVVPISYLSPPPFVDLLKRAEE 59
          IL NAKQ+LK+Q  +A+NQ  VPKGH+AVYVGE+++KRFVVPISYL  P FVDLL R+EE
Sbjct: 8  ILLNAKQILKMQAMSARNQFDVPKGHIAVYVGEIQRKRFVVPISYLKHPSFVDLLNRSEE 67

Query: 60 ELGFHHPMGALTIPCRED 77
          E GF HP G LTIPCRED
Sbjct: 68 EFGFCHPRGGLTIPCRED 85

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449458562|ref|XP_004147016.1| PREDICTED: auxin-induced protein X10A-like [Cucumis sativus] gi|449516363|ref|XP_004165216.1| PREDICTED: auxin-induced protein X10A-like [Cucumis sativus]

 Score =  115 bits (289), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 53/78 (67%), Positives = 64/78 (82%), Gaps = 1/78 (1%)

Query: 1  ILSNAKQVLKLQN-NAKNQCGVPKGHVAVYVGELEKKRFVVPISYLSPPPFVDLLKRAEE 59
          +L NAKQV K+   +++NQCGVPKGH+AVYVG++E+KRFVVP+SYL+ P F  LLK AEE
Sbjct: 8  LLLNAKQVFKMHTVSSRNQCGVPKGHIAVYVGDIERKRFVVPLSYLNHPSFSALLKSAEE 67

Query: 60 ELGFHHPMGALTIPCRED 77
          E GF HP G LTIPCRED
Sbjct: 68 EFGFKHPTGGLTIPCRED 85

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225430947|ref|XP_002271427.1| PREDICTED: auxin-induced protein 15A [Vitis vinifera]

 Score =  113 bits (282), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 52/78 (66%), Positives = 67/78 (85%), Gaps = 1/78 (1%)

Query: 1  ILSNAKQVLKLQN-NAKNQCGVPKGHVAVYVGELEKKRFVVPISYLSPPPFVDLLKRAEE 59
          ++SNAKQ+LKLQ+ + ++Q  VPKGH AVYVGE++KKRFVVPISYL+ P F DLL++AEE
Sbjct: 8  VISNAKQILKLQSVHIRSQSDVPKGHFAVYVGEIQKKRFVVPISYLNHPSFQDLLQQAEE 67

Query: 60 ELGFHHPMGALTIPCRED 77
          E GF+H MG LTIPC+E+
Sbjct: 68 EFGFNHSMGGLTIPCKEE 85

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225427874|ref|XP_002276412.1| PREDICTED: auxin-induced protein X10A [Vitis vinifera] gi|147804677|emb|CAN62605.1| hypothetical protein VITISV_016866 [Vitis vinifera]

 Score =  111 bits (278), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 54/77 (70%), Positives = 62/77 (80%), Gaps = 1/77 (1%)

Query: 2  LSNAKQVLKLQNN-AKNQCGVPKGHVAVYVGELEKKRFVVPISYLSPPPFVDLLKRAEEE 60
          + NAKQ+LKLQ+  ++NQ  VPKGH AVYVGE++KKRFVVPISYL+ P F DLL  AEEE
Sbjct: 9  IHNAKQILKLQSLLSRNQSSVPKGHCAVYVGEIQKKRFVVPISYLNHPAFQDLLHLAEEE 68

Query: 61 LGFHHPMGALTIPCRED 77
           GF HPMG LTIPC ED
Sbjct: 69 FGFDHPMGGLTIPCEED 85

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449458650|ref|XP_004147060.1| PREDICTED: uncharacterized protein LOC101203413 [Cucumis sativus] gi|449516377|ref|XP_004165223.1| PREDICTED: uncharacterized LOC101203413 [Cucumis sativus]

 Score =  111 bits (277), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 52/78 (66%), Positives = 63/78 (80%), Gaps = 1/78 (1%)

Query: 1  ILSNAKQVLKLQNN-AKNQCGVPKGHVAVYVGELEKKRFVVPISYLSPPPFVDLLKRAEE 59
          ++ +AKQ+LK+Q+   KNQ  VPKGHVAVYVGE+++KRFVVPISYL+ P F  LL  AEE
Sbjct: 8  LVPHAKQILKMQSGFTKNQLNVPKGHVAVYVGEIQRKRFVVPISYLNDPSFQQLLSHAEE 67

Query: 60 ELGFHHPMGALTIPCRED 77
          E GFHHP G LTIPC+ED
Sbjct: 68 EFGFHHPHGGLTIPCKED 85

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449458552|ref|XP_004147011.1| PREDICTED: uncharacterized protein LOC101211923 [Cucumis sativus]

 Score =  110 bits (276), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 51/78 (65%), Positives = 65/78 (83%), Gaps = 1/78 (1%)

Query: 1  ILSNAKQVLKLQNN-AKNQCGVPKGHVAVYVGELEKKRFVVPISYLSPPPFVDLLKRAEE 59
          ++ +AK++LK+Q++  KNQ  VPKGHVAVYVGE+++KRFVVP+SYL+ P F  LL RAEE
Sbjct: 8  LVPHAKKILKMQSSFTKNQLDVPKGHVAVYVGEIQRKRFVVPVSYLNDPSFQQLLSRAEE 67

Query: 60 ELGFHHPMGALTIPCRED 77
          E GFHHP G LTIPC+ED
Sbjct: 68 EFGFHHPHGGLTIPCKED 85

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	77
TAIR|locus:2047007	98	AT2G21210 "AT2G21210" [Arabido	0.987	0.775	0.584	6.3e-21
TAIR|locus:2116895	105	AT4G34810 "AT4G34810" [Arabido	0.987	0.723	0.620	1.3e-20
TAIR|locus:2116885	94	AT4G34800 "AT4G34800" [Arabido	0.922	0.755	0.657	5.7e-20
TAIR|locus:2116875	108	AT4G34790 "AT4G34790" [Arabido	0.987	0.703	0.593	7.2e-20
TAIR|locus:2141772	99	AT4G38840 "AT4G38840" [Arabido	1.0	0.777	0.560	1.9e-19
TAIR|locus:2161543	91	SAUR20 "AT5G18020" [Arabidopsi	0.961	0.813	0.565	9.5e-18
TAIR|locus:2172299	90	SAUR24 "AT5G18080" [Arabidopsi	0.961	0.822	0.552	1.6e-17
TAIR|locus:2161538	90	SAUR19 "AT5G18010" [Arabidopsi	0.961	0.822	0.565	2e-17
TAIR|locus:2116860	104	AT4G34770 [Arabidopsis thalian	0.740	0.548	0.724	2.5e-17
TAIR|locus:2161558	88	AT5G18030 "AT5G18030" [Arabido	0.935	0.818	0.565	4.1e-17

TAIR|locus:2047007 AT2G21210 "AT2G21210" [Arabidopsis thaliana (taxid:3702)]

 Score = 246 (91.7 bits), Expect = 6.3e-21, P = 6.3e-21
 Identities = 45/77 (58%), Positives = 61/77 (79%)

Query:     1 ILSNAKQVLKLQNNAKNQCGVPKGHVAVYVGEL-EKKRFVVPISYLSPPPFVDLLKRAEE 59
             +L ++KQ+LK  +++ N   +PKGH+AVYVGE+ +K+RFVVP++YLS P F  LL++AEE
Sbjct:     8 VLQSSKQLLKSLSHSSNNVAIPKGHLAVYVGEMMQKRRFVVPVTYLSHPCFQKLLRKAEE 67

Query:    60 ELGFHHPMGALTIPCRE 76
             E GF HPMG LTIPC E
Sbjct:    68 EFGFDHPMGGLTIPCTE 84

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

GO:0010200 "response to chitin" evidence=IEP

GO:0015995 "chlorophyll biosynthetic process" evidence=RCA

TAIR|locus:2116895 AT4G34810 "AT4G34810" [Arabidopsis thaliana (taxid:3702)]

 Score = 243 (90.6 bits), Expect = 1.3e-20, P = 1.3e-20
 Identities = 54/87 (62%), Positives = 65/87 (74%)

Query:     2 LSNA-KQVLKLQNNA-KNQCG------VPKGHVAVYVGE---LEKKRFVVPISYLSPPPF 50
             +SNA KQ+LKL + A +N+        VPKGHVAVYVGE   +EKKRFVVPIS+L+ P F
Sbjct:     8 ISNATKQILKLNSLANRNRTSSSSSDHVPKGHVAVYVGEQIEMEKKRFVVPISFLNHPSF 67

Query:    51 VDLLKRAEEELGFHHPMGALTIPCRED 77
              + L RAEEE GF+HPMG LTIPCRE+
Sbjct:    68 KEFLSRAEEEFGFNHPMGGLTIPCREE 94

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2116885 AT4G34800 "AT4G34800" [Arabidopsis thaliana (taxid:3702)]

 Score = 237 (88.5 bits), Expect = 5.7e-20, P = 5.7e-20
 Identities = 48/73 (65%), Positives = 57/73 (78%)

Query:     7 QVLKLQNNAKNQCGVPKGHVAVYVGE-LE-KKRFVVPISYLSPPPFVDLLKRAEEELGFH 64
             +V+  + + K Q  VPKGHVAVYVGE +E KKRFVVPISYL+ P F  LL RAEEE GF+
Sbjct:     7 RVINSKQSQKQQSRVPKGHVAVYVGEEMESKKRFVVPISYLNHPSFQGLLSRAEEEFGFN 66

Query:    65 HPMGALTIPCRED 77
             HP+G LTIPCRE+
Sbjct:    67 HPIGGLTIPCREE 79

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2116875 AT4G34790 "AT4G34790" [Arabidopsis thaliana (taxid:3702)]

 Score = 236 (88.1 bits), Expect = 7.2e-20, P = 7.2e-20
 Identities = 54/91 (59%), Positives = 63/91 (69%)

Query:     1 ILSNAKQVLKLQNNAKNQCG-------------VPKGHVAVYVGE-LEKKRFVVPISYLS 46
             +L NAKQ+ K Q+  +N+ G             VPKGHVAVYVGE +EKKRFVVPISYL+
Sbjct:     7 MLPNAKQIFKSQS-MRNKNGSSSPSTTTTTSGLVPKGHVAVYVGEQMEKKRFVVPISYLN 65

Query:    47 PPPFVDLLKRAEEELGFHHPMGALTIPCRED 77
              P F + L RAEEE GFHH MG LTIPCRE+
Sbjct:    66 HPLFREFLNRAEEECGFHHSMGGLTIPCREE 96

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2141772 AT4G38840 "AT4G38840" [Arabidopsis thaliana (taxid:3702)]

 Score = 232 (86.7 bits), Expect = 1.9e-19, P = 1.9e-19
 Identities = 46/82 (56%), Positives = 60/82 (73%)

Query:     1 ILSNAKQVL---KL--QNNAKNQCGVPKGHVAVYVGELEKKRFVVPISYLSPPPFVDLLK 55
             +L ++KQ+L   KL   +++ +   VPKG++AVYVGE   KRFVVP+SYL  P F DLL+
Sbjct:     8 VLQSSKQILRQAKLLSSSSSSSSLDVPKGYLAVYVGEQNMKRFVVPVSYLDQPSFQDLLR 67

Query:    56 RAEEELGFHHPMGALTIPCRED 77
             +AEEE GF HPMG LTIPC E+
Sbjct:    68 KAEEEFGFDHPMGGLTIPCSEE 89

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0009409 "response to cold" evidence=IEP;RCA

GO:0042742 "defense response to bacterium" evidence=RCA

TAIR|locus:2161543 SAUR20 "AT5G18020" [Arabidopsis thaliana (taxid:3702)]

 Score = 216 (81.1 bits), Expect = 9.5e-18, P = 9.5e-18
 Identities = 43/76 (56%), Positives = 53/76 (69%)

Query:     2 LSNAKQVLKLQNNAKNQCGVPKGHVAVYVGELEKKRFVVPISYLSPPPFVDLLKRAEEEL 61
             L  AK++L     A +    PKG +AVYVGE +KKR++VPISYL+ P F  LL ++EEE 
Sbjct:     7 LLGAKKILSRSTTAAS--AAPKGFLAVYVGESQKKRYLVPISYLNQPSFQALLSKSEEEF 64

Query:    62 GFHHPMGALTIPCRED 77
             GF HPMG LTIPC ED
Sbjct:    65 GFDHPMGGLTIPCPED 80

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2172299 SAUR24 "AT5G18080" [Arabidopsis thaliana (taxid:3702)]

 Score = 214 (80.4 bits), Expect = 1.6e-17, P = 1.6e-17
 Identities = 42/76 (55%), Positives = 53/76 (69%)

Query:     2 LSNAKQVLKLQNNAKNQCGVPKGHVAVYVGELEKKRFVVPISYLSPPPFVDLLKRAEEEL 61
             L  AK++L     A +    PKG +AVYVGE +KKR++VP+SYL+ P F  LL ++EEE 
Sbjct:     7 LLGAKKILSRSTGAGS--AAPKGFLAVYVGESQKKRYLVPVSYLNQPSFQALLSKSEEEF 64

Query:    62 GFHHPMGALTIPCRED 77
             GF HPMG LTIPC ED
Sbjct:    65 GFDHPMGGLTIPCPED 80

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2161538 SAUR19 "AT5G18010" [Arabidopsis thaliana (taxid:3702)]

 Score = 213 (80.0 bits), Expect = 2.0e-17, P = 2.0e-17
 Identities = 43/76 (56%), Positives = 53/76 (69%)

Query:     2 LSNAKQVLKLQNNAKNQCGVPKGHVAVYVGELEKKRFVVPISYLSPPPFVDLLKRAEEEL 61
             L  AK++L     A +    PKG +AVYVGE +KKR++VP+SYLS P F  LL ++EEE 
Sbjct:     7 LLGAKKILSRSTAAGS--AAPKGFLAVYVGESQKKRYLVPLSYLSQPSFQALLSKSEEEF 64

Query:    62 GFHHPMGALTIPCRED 77
             GF HPMG LTIPC ED
Sbjct:    65 GFAHPMGGLTIPCPED 80

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2116860 AT4G34770 [Arabidopsis thaliana (taxid:3702)]

 Score = 212 (79.7 bits), Expect = 2.5e-17, P = 2.5e-17
 Identities = 42/58 (72%), Positives = 45/58 (77%)

Query:    21 VPKGHVAVYVGEL-EKKRFVVPISYLSPPPFVDLLKRAEEELGFHHPMGALTIPCRED 77
             VPKGHVAVYVGE   +KRFV+PISYL+ P F  LL  AEEE GF HPMG LTIPC ED
Sbjct:    35 VPKGHVAVYVGETYHRKRFVIPISYLNHPLFQGLLNLAEEEFGFDHPMGGLTIPCTED 92

GO:0009507 "chloroplast" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2161558 AT5G18030 "AT5G18030" [Arabidopsis thaliana (taxid:3702)]

 Score = 210 (79.0 bits), Expect = 4.1e-17, P = 4.1e-17
 Identities = 43/76 (56%), Positives = 54/76 (71%)

Query:     2 LSNAKQVLKLQNNAKNQCGVPKGHVAVYVGELEKKRFVVPISYLSPPPFVDLLKRAEEEL 61
             L  AK++L  ++ A      PKG +AVYVGE +KKR++VP+SYLS P F  LL ++EEE 
Sbjct:     7 LLGAKKILS-RSTAS---AAPKGFLAVYVGESQKKRYLVPLSYLSQPSFQALLSKSEEEF 62

Query:    62 GFHHPMGALTIPCRED 77
             GF HPMG LTIPC ED
Sbjct:    63 GFDHPMGGLTIPCPED 78

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P32295	ARG7_VIGRR	No assigned EC number	0.5324	0.9740	0.8152	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00025075001 SubName- Full=Chromosome chr4 scaffold_32, whole genome shotgun sequence; (97 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	77
pfam02519	99	pfam02519, Auxin_inducible, Auxin responsive prote	5e-30
PLN03219	108	PLN03219, PLN03219, uncharacterized protein; Provi	3e-28
PLN03220	105	PLN03220, PLN03220, uncharacterized protein; Provi	4e-28
PLN03090	104	PLN03090, PLN03090, auxin-responsive family protei	5e-23

>gnl|CDD|217082 pfam02519, Auxin_inducible, Auxin responsive protein

 Score =  101 bits (253), Expect = 5e-30
 Identities = 42/77 (54%), Positives = 49/77 (63%), Gaps = 2/77 (2%)

Query: 1  ILSNAKQVLKLQNNAKNQCGVPKGHVAVYVGELEKKRFVVPISYLSPPPFVDLLKRAEEE 60
          ILS A    +  ++  +   VPKGH AVYVGE E +RFVVPISYL+ P F +LL RAEEE
Sbjct: 15 ILSAASGRSRGSSSKSSSADVPKGHFAVYVGE-ETRRFVVPISYLNHPLFQELLDRAEEE 73

Query: 61 LGFHHPMGALTIPCRED 77
           GF    G LTIPC   
Sbjct: 74 FGFDQ-DGGLTIPCDVV 89

This family consists of the protein products of the ARG7 auxin responsive genes family none of which have any identified functional role. Length = 99

>gnl|CDD|178758 PLN03219, PLN03219, uncharacterized protein; Provisional

 Score = 97.1 bits (241), Expect = 3e-28
 Identities = 54/91 (59%), Positives = 63/91 (69%), Gaps = 15/91 (16%)

Query: 1  ILSNAKQVLKLQNNAKNQCG-------------VPKGHVAVYVGE-LEKKRFVVPISYLS 46
          +L NAKQ+ K Q+  +N+ G             VPKGHVAVYVGE +EKKRFVVPISYL+
Sbjct: 7  MLPNAKQIFKSQS-MRNKNGSSSPSSSTTTSGLVPKGHVAVYVGEQMEKKRFVVPISYLN 65

Query: 47 PPPFVDLLKRAEEELGFHHPMGALTIPCRED 77
           P F + L RAEEE GFHH MG LTIPCRE+
Sbjct: 66 HPLFREFLNRAEEECGFHHSMGGLTIPCREE 96

Length = 108

>gnl|CDD|178759 PLN03220, PLN03220, uncharacterized protein; Provisional

 Score = 96.7 bits (240), Expect = 4e-28
 Identities = 54/87 (62%), Positives = 65/87 (74%), Gaps = 11/87 (12%)

Query: 2  LSNA-KQVLKLQNNA-KNQCG------VPKGHVAVYVGE---LEKKRFVVPISYLSPPPF 50
          +SNA KQ+LKL + A +N+        VPKGHVAVYVGE   +EKKRFVVPIS+L+ P F
Sbjct: 8  ISNATKQILKLNSLANRNRTSSSSSDHVPKGHVAVYVGEQIEMEKKRFVVPISFLNHPSF 67

Query: 51 VDLLKRAEEELGFHHPMGALTIPCRED 77
           + L RAEEE GF+HPMG LTIPCRE+
Sbjct: 68 KEFLSRAEEEFGFNHPMGGLTIPCREE 94

Length = 105

>gnl|CDD|178639 PLN03090, PLN03090, auxin-responsive family protein; Provisional

 Score = 83.7 bits (207), Expect = 5e-23
 Identities = 41/80 (51%), Positives = 51/80 (63%), Gaps = 11/80 (13%)

Query: 6  KQVLKLQNN-AKNQC--------GVPKGHVAVYVGELEKKRFVVPISYLSPPPFVDLLKR 56
          KQ+LK  ++  K Q          VPKGH  VYVGE  + R++VPIS+L+ P F  LL++
Sbjct: 16 KQILKRCSSLGKKQGYDEDGLPLDVPKGHFPVYVGE-NRSRYIVPISFLTHPEFQSLLQQ 74

Query: 57 AEEELGFHHPMGALTIPCRE 76
          AEEE GF H MG LTIPC E
Sbjct: 75 AEEEFGFDHDMG-LTIPCEE 93

Length = 104

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	77
PLN03090	104	auxin-responsive family protein; Provisional	100.0
PLN03220	105	uncharacterized protein; Provisional	100.0
PLN03219	108	uncharacterized protein; Provisional	100.0
PF02519	100	Auxin_inducible: Auxin responsive protein; InterPr	99.97
PRK02899	197	adaptor protein; Provisional	86.81
smart00666	81	PB1 PB1 domain. Phox and Bem1p domain, present in	85.03
PRK02315	233	adaptor protein; Provisional	82.71

>PLN03090 auxin-responsive family protein; Provisional

Probab=100.00  E-value=6.4e-36  Score=197.53  Aligned_cols=73  Identities=51%  Similarity=0.848  Sum_probs=66.5

Q ss_pred             hhHHHHHhhhhccc---------CCCCCCcceEEEEEccCCceEEEEecccCCChhHHHHHHHHHHhhCCCCCCCcEEec
Q 047583            3 SNAKQVLKLQNNAK---------NQCGVPKGHVAVYVGELEKKRFVVPISYLSPPPFVDLLKRAEEELGFHHPMGALTIP   73 (77)
Q Consensus         3 ~~~k~~l~~~~s~~---------~~~~vpkG~~aVyVG~~e~~RfvVp~~~L~hP~F~~LL~~aeeEfG~~~~~G~L~IP   73 (77)
                      .++||+|+||.|.+         .+.+||+||||||||+ +++||+||++|||||+|++||++|||||||+|+ |+|+||
T Consensus        13 ~~~kq~l~r~~s~~~~~~~~~~~~~~~vpkG~~aVyVG~-~~~RfvVp~~~L~hP~F~~LL~~aeeEfGf~~~-G~L~IP   90 (104)
T PLN03090         13 AMLKQILKRCSSLGKKQGYDEDGLPLDVPKGHFPVYVGE-NRSRYIVPISFLTHPEFQSLLQQAEEEFGFDHD-MGLTIP   90 (104)
T ss_pred             HHHHHHHHHHHHhcccCCcccccCCCCCCCCcEEEEECC-CCEEEEEEHHHcCCHHHHHHHHHHHHHhCCCCC-CcEEEe
Confidence            46899999998764         2457999999999998 899999999999999999999999999999997 999999


Q ss_pred             CCCC
Q 047583           74 CRED   77 (77)
Q Consensus        74 C~~d   77 (77)
                      |+++
T Consensus        91 C~~~   94 (104)
T PLN03090         91 CEEV   94 (104)
T ss_pred             CCHH
Confidence            9974

>PLN03220 uncharacterized protein; Provisional

Probab=100.00  E-value=1.3e-35  Score=196.29  Aligned_cols=75  Identities=67%  Similarity=1.103  Sum_probs=65.4

Q ss_pred             hhHHHHHhhhhcc-------cCCCCCCcceEEEEEccC---CceEEEEecccCCChhHHHHHHHHHHhhCCCCCCCcEEe
Q 047583            3 SNAKQVLKLQNNA-------KNQCGVPKGHVAVYVGEL---EKKRFVVPISYLSPPPFVDLLKRAEEELGFHHPMGALTI   72 (77)
Q Consensus         3 ~~~k~~l~~~~s~-------~~~~~vpkG~~aVyVG~~---e~~RfvVp~~~L~hP~F~~LL~~aeeEfG~~~~~G~L~I   72 (77)
                      .+.||+++|+...       +.+++|||||||||||++   +++||+||++|||||.|++||++|||||||+|++|+|+|
T Consensus        10 ~~~k~~~~~~~~~~~~~~~~~~~~~VPkGh~aVyVGe~~~~e~kRFVVPv~yL~hP~F~~LL~~AeEEfGf~~~~G~L~I   89 (105)
T PLN03220         10 NATKQILKLNSLANRNRTSSSSSDHVPKGHVAVYVGEQIEMEKKRFVVPISFLNHPSFKEFLSRAEEEFGFNHPMGGLTI   89 (105)
T ss_pred             HHHHHHHHHHhhcccccccccccCCCCCCeEEEEECCCCCccceEEEEEHHHcCChHHHHHHHHHHHHhCCCCCCCCEEe
Confidence            4569999988622       245689999999999972   589999999999999999999999999999996699999


Q ss_pred             cCCCC
Q 047583           73 PCRED   77 (77)
Q Consensus        73 PC~~d   77 (77)
                      ||+++
T Consensus        90 PCd~~   94 (105)
T PLN03220         90 PCREE   94 (105)
T ss_pred             eCCHH
Confidence            99974

>PLN03219 uncharacterized protein; Provisional

Probab=100.00  E-value=1.6e-34  Score=191.93  Aligned_cols=77  Identities=68%  Similarity=1.096  Sum_probs=65.3

Q ss_pred             ChhhHHHHHhhhh------cc------cCCCCCCcceEEEEEcc-CCceEEEEecccCCChhHHHHHHHHHHhhCCCCCC
Q 047583            1 ILSNAKQVLKLQN------NA------KNQCGVPKGHVAVYVGE-LEKKRFVVPISYLSPPPFVDLLKRAEEELGFHHPM   67 (77)
Q Consensus         1 ~~~~~k~~l~~~~------s~------~~~~~vpkG~~aVyVG~-~e~~RfvVp~~~L~hP~F~~LL~~aeeEfG~~~~~   67 (77)
                      |+.++||+.|-..      ++      +.+.+|||||||||||+ +|++||+||++|||||+|++||++|||||||+|++
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vpkGh~aVYVG~~~E~kRFvVPi~yL~hP~F~~LL~~AeEEfGf~~~~   86 (108)
T PLN03219          7 MLPNAKQIFKSQSMRNKNGSSSPSSSTTTSGLVPKGHVAVYVGEQMEKKRFVVPISYLNHPLFREFLNRAEEECGFHHSM   86 (108)
T ss_pred             HHhhHHHHHHHHHHhcccCCCCCccCCCCCCCCCCCeEEEEECCCCCceEEEEEHHHcCChHHHHHHHHHHHHhCCCCCC
Confidence            4678888887332      11      14567999999999998 36999999999999999999999999999999866


Q ss_pred             CcEEecCCCC
Q 047583           68 GALTIPCRED   77 (77)
Q Consensus        68 G~L~IPC~~d   77 (77)
                      |+|+|||+++
T Consensus        87 G~L~IPCd~~   96 (108)
T PLN03219         87 GGLTIPCREE   96 (108)
T ss_pred             CCEEEeCCHH
Confidence            9999999974

>PF02519 Auxin_inducible: Auxin responsive protein; InterPro: IPR003676 This family consists of the protein products of a gene cluster that encodes a group of auxin-regulated RNAs (small auxin up RNAs, SAURs) []

Probab=99.97  E-value=2.7e-32  Score=178.13  Aligned_cols=58  Identities=62%  Similarity=1.110  Sum_probs=54.9

Q ss_pred             CCCCCcceEEEEEccCCceEEEEecccCCChhHHHHHHHHHHhhCCCCCCCcEEecCCCC
Q 047583           18 QCGVPKGHVAVYVGELEKKRFVVPISYLSPPPFVDLLKRAEEELGFHHPMGALTIPCRED   77 (77)
Q Consensus        18 ~~~vpkG~~aVyVG~~e~~RfvVp~~~L~hP~F~~LL~~aeeEfG~~~~~G~L~IPC~~d   77 (77)
                      ..++|+||||||||+ +++||+||++|||||+|++||++|||||||+++ |+|+|||+++
T Consensus        33 ~~~vp~G~~~VyVG~-~~~Rfvvp~~~L~hp~f~~LL~~aeeEfG~~~~-G~l~iPC~~~   90 (100)
T PF02519_consen   33 ESDVPKGHFAVYVGE-ERRRFVVPVSYLNHPLFQELLEQAEEEFGFDQD-GPLTIPCDVV   90 (100)
T ss_pred             cCCCCCCeEEEEeCc-cceEEEechHHcCchhHHHHHHHHhhhcCcCCC-CcEEeeCCHH
Confidence            367899999999998 899999999999999999999999999999996 9999999974

Proteins from this ARG7 auxin responsive genes family have no identified functional role [].

>PRK02899 adaptor protein; Provisional

Probab=86.81  E-value=0.66  Score=33.23  Aligned_cols=24  Identities=33%  Similarity=0.732  Sum_probs=20.7

Q ss_pred             hhHHHHHHHHHHhhCCCCCCCcEEe
Q 047583           48 PPFVDLLKRAEEELGFHHPMGALTI   72 (77)
Q Consensus        48 P~F~~LL~~aeeEfG~~~~~G~L~I   72 (77)
                      -+|.++|++|..|+||.-+ |+|+|
T Consensus        39 ~lF~~mm~Ea~~e~~F~~~-~pl~~   62 (197)
T PRK02899         39 QLFRDMMQEANKELGFEAD-GPIAV   62 (197)
T ss_pred             HHHHHHHHHhhhccCcccC-CeEEE
Confidence            3677789999999999976 99986

>smart00666 PB1 PB1 domain

Probab=85.03  E-value=2.1  Score=25.38  Aligned_cols=29  Identities=31%  Similarity=0.583  Sum_probs=25.4

Q ss_pred             ccCCceEEEEecccCCChhHHHHHHHHHHhhCCC
Q 047583           31 GELEKKRFVVPISYLSPPPFVDLLKRAEEELGFH   64 (77)
Q Consensus        31 G~~e~~RfvVp~~~L~hP~F~~LL~~aeeEfG~~   64 (77)
                      |+ +.+||.+|-    ...|.+|..+..+-|+..
T Consensus         9 ~~-~~~~~~~~~----~~s~~dL~~~i~~~~~~~   37 (81)
T smart00666        9 GG-ETRRLSVPR----DISFEDLRSKVAKRFGLD   37 (81)
T ss_pred             CC-EEEEEEECC----CCCHHHHHHHHHHHhCCC
Confidence            65 789999986    788999999999999985

Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.

>PRK02315 adaptor protein; Provisional

Probab=82.71  E-value=1.1  Score=32.80  Aligned_cols=24  Identities=25%  Similarity=0.386  Sum_probs=21.6

Q ss_pred             hhHHHHHHHHHHhhCCCCCCCcEEe
Q 047583           48 PPFVDLLKRAEEELGFHHPMGALTI   72 (77)
Q Consensus        48 P~F~~LL~~aeeEfG~~~~~G~L~I   72 (77)
                      -+|.++|++|..|+||.. +|+|+|
T Consensus        39 ~fF~~mm~Ea~~e~~F~~-~~pl~~   62 (233)
T PRK02315         39 EFFYSMMDEVDEEDDFAD-EGPLWF   62 (233)
T ss_pred             HHHHHHHHHhccccCccc-CCeEEE
Confidence            479999999999999997 499986

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00